Citrus Sinensis ID: 030356

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------18
Protein Sequence
MDNEVVPVYTLDEALNHVGFGKFQILVLIYAGLGLVAEAMEIMILSFIGPAIKSEWNLSPAQETLLTSVVFAGLLVGSYSWGFISDNYGRRKGLLGIAMLASVAGLLSAFSLNYLSLVTLRGLVGIGLGSGPVCLSWFLEFIPASNRGMWMVVISIFWTLGTIFEAALAWGNILLNSKN
Secondary Structure (PSIPRED)
ccccccccccHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccccHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccc
Secondary Structure Prediction (SSPRO)
ccccccccccHHHHHHHccccHHHHHHEEHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHEHEEHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccc
Coil and Loop (DISEMBL)
MDNEVVPVYTLDealnhvgfgKFQILVLIYAGLGLVAEAMEIMILSFIGpaiksewnlspaqetLLTSVVFAGLLVgsyswgfisdnygrrkGLLGIAMLASVAGLLSAFSLNYLSLVTLRGLvgiglgsgpvCLSWFLefipasnrgMWMVVISIFWTLGTIFEAALAWGNILLNSKN
Flexible Loop (DISEMBL)
MDNEVVPVYTLDEALNHVGFGKFQILVLIYAGLGLVAEAMEIMILSFIGPAIKSEWNLSPAQETLLTSVVFAGLLVGSYSWGFISDNYGRRKGLLGIAMLASVAGLLSAFSLNYLSLVTLRGLVGIGLGSGPVCLSWFLEFIPASNRGMWMVVISIFWTLGTIFEAALAWGnillnskn
Low Complexity Region (SEG)
MDNEVVPVYTLDEALNHVGFGKFQILVLIYAGLGLVAEAMEIMILSFIGPAIKSEWNLSPAQETLLTSVVFAGLLVGSYSWGFISDNYGRRKGLLGIAMLASVAGLLSAFSLNYLSLVTLRGLVGIGLGSGPVCLSWFLEFIPASNRGMWMVVISIFWTLGTIFEAALAWGNILLNSKN
Disordered region (IsUnstruct)
****VVPVYTLDEALNHVGFGKFQILVLIYAGLGLVAEAMEIMILSFIGPAIKSEWNLSPAQETLLTSVVFAGLLVGSYSWGFISDNYGRRKGLLGIAMLASVAGLLSAFSLNYLSLVTLRGLVGIGLGSGPVCLSWFLEFIPASNRGMWMVVISIFWTLGTIFEAALAWGNILL****
Disordered Region (DISOPRED)
*****VP***LDEALNHVGFGKFQILVLIYAGLGLVAEAMEIMILSFIGPAIKSEWNLSPAQETLLTSVVFAGLLVGSYSWGFISDNYGRRKGLLGIAMLASVAGLLSAFSLNYLSLVTLRGLVGIGLGSGPVCLSWFLEFIPASNRGMWMVVISIFWTLGTIFEAALAWGNILLNS**
Disordered Region (DISEMBL)
MDNEVVPVYTLDEALNHVGFGKFQILVLIYAGLGLVAEAMEIMILSFIGPAIKSEWNLSPAQETLLTSVVFAGLLVGSYSWGFISDNYGRRKGLLGIAMLASVAGLLSAFSLNYLSLVTLRGLVGIGLGSGPVCLSWFLEFIPASNRGMWMVVISIFWTLGTIFEAALAWGNILLNSKN
Disordered Region (DISPRO)
*****VPVYTLDEALNHVGFGKFQILVLIYAGLGLVAEAMEIMILSFIGPAIKSEWNLSPAQETLLTSVVFAGLLVGSYSWGFISDNYGRRKGLLGIAMLASVAGLLSAFSLNYLSLVTLRGLVGIGLGSGPVCLSWFLEFIPASNRGMWMVVISIFWTLGTIFEAALAWGNILLNS**
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiHHHHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MDNEVVPVYTLDEALNHVGFGKFQILVLIYAGLGLVAEAMEIMILSFIGPAIKSEWNLSPAQETLLTSVVFAGLLVGSYSWGFISDNYGRRKGLLGIAMLASVAGLLSAFSLNYLSLVTLRGLVGIGLGSGPVCLSWFLEFIPASNRGMWMVVISIFWTLGTIFEAALAWGNILLNSKN
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	179	2.2.26 [Sep-21-2011]
Q940M4	500	Organic cation/carnitine	yes	no	0.905	0.324	0.672	5e-52
P30638	520	Putative transporter ZK63	yes	no	0.932	0.321	0.408	1e-34
Q2XWK0	548	Synaptic vesicle 2-relate	N/A	no	0.932	0.304	0.431	1e-31
Q8N4V2	548	Synaptic vesicle 2-relate	yes	no	0.932	0.304	0.419	5e-31
Q1JP63	548	Synaptic vesicle 2-relate	yes	no	0.932	0.304	0.419	5e-31
Q5R5T8	548	Synaptic vesicle 2-relate	yes	no	0.932	0.304	0.419	5e-31
Q8BFT9	548	Synaptic vesicle 2-relate	yes	no	0.932	0.304	0.413	2e-30
Q9Z2I7	548	Synaptic vesicle 2-relate	yes	no	0.932	0.304	0.413	3e-30
Q1LVS8	506	Putative transporter SVOP	no	no	0.871	0.308	0.384	5e-24
Q6PDF3	494	Putative transporter SVOP	no	no	0.938	0.340	0.333	1e-20

>sp|Q940M4|OCT7_ARATH Organic cation/carnitine transporter 7 OS=Arabidopsis thaliana GN=OCT7 PE=2 SV=1

 Score =  203 bits (516), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 109/162 (67%), Positives = 135/162 (83%)

Query: 9   YTLDEALNHVGFGKFQILVLIYAGLGLVAEAMEIMILSFIGPAIKSEWNLSPAQETLLTS 68
           +T+DEAL  +GFGKFQI VL YAG+G VAEAME+M+LSF+GPA++S WNLS  QE+L+TS
Sbjct: 8   FTVDEALVAMGFGKFQIYVLAYAGMGWVAEAMEMMLLSFVGPAVQSLWNLSARQESLITS 67

Query: 69  VVFAGLLVGSYSWGFISDNYGRRKGLLGIAMLASVAGLLSAFSLNYLSLVTLRGLVGIGL 128
           VVFAG+L+G+YSWG +SD +GRRKG +  A++  VAG LSAFS NY+ L+ LR LVG+GL
Sbjct: 68  VVFAGMLIGAYSWGIVSDKHGRRKGFIITAVVTFVAGFLSAFSPNYMWLIILRCLVGLGL 127

Query: 129 GSGPVCLSWFLEFIPASNRGMWMVVISIFWTLGTIFEAALAW 170
           G GPV  SW+LEFIPA +RG WMVV S FWT+GTIFEA+LAW
Sbjct: 128 GGGPVLASWYLEFIPAPSRGTWMVVFSAFWTVGTIFEASLAW 169

High affinity carnitine transporter involved in the active cellular uptake of carnitine. Also transports organic cations.
Arabidopsis thaliana (taxid: 3702)

>sp|P30638|YOU1_CAEEL Putative transporter ZK637.1 OS=Caenorhabditis elegans GN=ZK637.1 PE=3 SV=5

 Score =  145 bits (367), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 69/169 (40%), Positives = 111/169 (65%), Gaps = 2/169 (1%)

Query: 2   DNEVVPVYTLDEALNHVGFGKFQILVLIYAGLGLVAEAMEIMILSFIGPAIKSEWNLSPA 61
           D+E    +T+DEA+  +GFG+FQ+ + I  G+  +A+AME+M+LS I PA+  EW +S  
Sbjct: 62  DSE--KTFTVDEAVEALGFGRFQLKLSILTGMAWMADAMEMMLLSLISPALACEWGISSV 119

Query: 62  QETLLTSVVFAGLLVGSYSWGFISDNYGRRKGLLGIAMLASVAGLLSAFSLNYLSLVTLR 121
           Q+ L+T+ VF+G+++ S  WG I D +GRRKGL    ++A + G++S  S ++  L+  R
Sbjct: 120 QQALVTTCVFSGMMLSSTFWGKICDRFGRRKGLTFSTLVACIMGVISGMSPHFYVLLFFR 179

Query: 122 GLVGIGLGSGPVCLSWFLEFIPASNRGMWMVVISIFWTLGTIFEAALAW 170
           GL G G+G  P  ++ + EF+P + R   +V+I  FW +G +FEA LA+
Sbjct: 180 GLTGFGIGGVPQSVTLYAEFLPTAQRAKCVVLIESFWAIGAVFEALLAY 228

Caenorhabditis elegans (taxid: 6239)

>sp|Q2XWK0|SVOP_XENLA Synaptic vesicle 2-related protein OS=Xenopus laevis GN=svop PE=2 SV=1

 Score =  135 bits (340), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 72/167 (43%), Positives = 103/167 (61%)

Query: 3   NEVVPVYTLDEALNHVGFGKFQILVLIYAGLGLVAEAMEIMILSFIGPAIKSEWNLSPAQ 62
           N     + +++A+  +GFGKFQ  + +  GL  +A+AME+MILS + P +  EW L   Q
Sbjct: 62  NPTDDTFMVEDAVEAIGFGKFQWKLSMLTGLAWMADAMEMMILSILAPQLHCEWRLPSWQ 121

Query: 63  ETLLTSVVFAGLLVGSYSWGFISDNYGRRKGLLGIAMLASVAGLLSAFSLNYLSLVTLRG 122
             LLTSVVF G++  S  WG +SD YGRR GL    +     G+LSAF+  Y  ++ LRG
Sbjct: 122 VALLTSVVFIGMMASSSLWGNVSDQYGRRTGLKISVIWTLYYGILSAFAPVYSWILVLRG 181

Query: 123 LVGIGLGSGPVCLSWFLEFIPASNRGMWMVVISIFWTLGTIFEAALA 169
           LVG G+G  P  ++ + EF+P  +R   +++I IFW LGT+FE  LA
Sbjct: 182 LVGFGIGGVPQSVTLYAEFLPMKSRAKCILLIEIFWALGTVFEVLLA 228

Xenopus laevis (taxid: 8355)

>sp|Q8N4V2|SVOP_HUMAN Synaptic vesicle 2-related protein OS=Homo sapiens GN=SVOP PE=2 SV=1

 Score =  134 bits (336), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 70/167 (41%), Positives = 102/167 (61%)

Query: 3   NEVVPVYTLDEALNHVGFGKFQILVLIYAGLGLVAEAMEIMILSFIGPAIKSEWNLSPAQ 62
           N     + +++A+  +GFGKFQ  + +  GL  +A+AME+MILS + P +  EW L   Q
Sbjct: 62  NPTDDTFMVEDAVEAIGFGKFQWKLSVLTGLAWMADAMEMMILSILAPQLHCEWRLPSWQ 121

Query: 63  ETLLTSVVFAGLLVGSYSWGFISDNYGRRKGLLGIAMLASVAGLLSAFSLNYLSLVTLRG 122
             LLTSVVF G++  S  WG ISD YGR+ GL    +     G+LSAF+  Y  ++ LRG
Sbjct: 122 VALLTSVVFVGMMSSSTLWGNISDQYGRKTGLKISVLWTLYYGILSAFAPVYSWILVLRG 181

Query: 123 LVGIGLGSGPVCLSWFLEFIPASNRGMWMVVISIFWTLGTIFEAALA 169
           LVG G+G  P  ++ + EF+P   R   +++I +FW +GT+FE  LA
Sbjct: 182 LVGFGIGGVPQSVTLYAEFLPMKARAKCILLIEVFWAIGTVFEVVLA 228

Homo sapiens (taxid: 9606)

>sp|Q1JP63|SVOP_BOVIN Synaptic vesicle 2-related protein OS=Bos taurus GN=SVOP PE=2 SV=1

 Score =  134 bits (336), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 70/167 (41%), Positives = 102/167 (61%)

Query: 3   NEVVPVYTLDEALNHVGFGKFQILVLIYAGLGLVAEAMEIMILSFIGPAIKSEWNLSPAQ 62
           N     + +++A+  +GFGKFQ  + +  GL  +A+AME+MILS + P +  EW L   Q
Sbjct: 62  NPTDDTFMVEDAVEAIGFGKFQWKLSVLTGLAWMADAMEMMILSILAPQLHCEWRLPSWQ 121

Query: 63  ETLLTSVVFAGLLVGSYSWGFISDNYGRRKGLLGIAMLASVAGLLSAFSLNYLSLVTLRG 122
             LLTSVVF G++  S  WG ISD YGR+ GL    +     G+LSAF+  Y  ++ LRG
Sbjct: 122 VALLTSVVFVGMMSSSTLWGNISDQYGRKTGLKISVLWTLYYGILSAFAPVYSWILVLRG 181

Query: 123 LVGIGLGSGPVCLSWFLEFIPASNRGMWMVVISIFWTLGTIFEAALA 169
           LVG G+G  P  ++ + EF+P   R   +++I +FW +GT+FE  LA
Sbjct: 182 LVGFGIGGVPQSVTLYAEFLPMKARAKCILLIEVFWAIGTVFEVVLA 228

Bos taurus (taxid: 9913)

>sp|Q5R5T8|SVOP_PONAB Synaptic vesicle 2-related protein OS=Pongo abelii GN=SVOP PE=2 SV=1

 Score =  134 bits (336), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 70/167 (41%), Positives = 102/167 (61%)

Query: 3   NEVVPVYTLDEALNHVGFGKFQILVLIYAGLGLVAEAMEIMILSFIGPAIKSEWNLSPAQ 62
           N     + +++A+  +GFGKFQ  + +  GL  +A+AME+MILS + P +  EW L   Q
Sbjct: 62  NPTDDTFMVEDAVEAIGFGKFQWKLSVLTGLAWMADAMEMMILSILAPQLHCEWRLPSWQ 121

Query: 63  ETLLTSVVFAGLLVGSYSWGFISDNYGRRKGLLGIAMLASVAGLLSAFSLNYLSLVTLRG 122
             LLTSVVF G++  S  WG ISD YGR+ GL    +     G+LSAF+  Y  ++ LRG
Sbjct: 122 VALLTSVVFVGMMSSSTLWGNISDQYGRKTGLKISVLWTLYYGILSAFAPVYSWILVLRG 181

Query: 123 LVGIGLGSGPVCLSWFLEFIPASNRGMWMVVISIFWTLGTIFEAALA 169
           LVG G+G  P  ++ + EF+P   R   +++I +FW +GT+FE  LA
Sbjct: 182 LVGFGIGGVPQSVTLYAEFLPMKARAKCILLIEVFWAIGTVFEVVLA 228

Pongo abelii (taxid: 9601)

>sp|Q8BFT9|SVOP_MOUSE Synaptic vesicle 2-related protein OS=Mus musculus GN=Svop PE=1 SV=1

 Score =  131 bits (330), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 69/167 (41%), Positives = 102/167 (61%)

Query: 3   NEVVPVYTLDEALNHVGFGKFQILVLIYAGLGLVAEAMEIMILSFIGPAIKSEWNLSPAQ 62
           N     + +++A+  +GFG+FQ  + +  GL  +A+AME+MILS + P +  EW L   Q
Sbjct: 62  NPTDDTFMVEDAVEAIGFGRFQWKLSVLTGLAWMADAMEMMILSILAPQLHCEWRLPSWQ 121

Query: 63  ETLLTSVVFAGLLVGSYSWGFISDNYGRRKGLLGIAMLASVAGLLSAFSLNYLSLVTLRG 122
             LLTSVVF G++  S  WG ISD YGR+ GL    +     G+LSAF+  Y  ++ LRG
Sbjct: 122 VALLTSVVFIGMMSSSTLWGNISDQYGRKTGLKISVLWTLYYGILSAFAPVYSWILVLRG 181

Query: 123 LVGIGLGSGPVCLSWFLEFIPASNRGMWMVVISIFWTLGTIFEAALA 169
           LVG G+G  P  ++ + EF+P   R   +++I +FW +GT+FE  LA
Sbjct: 182 LVGFGIGGVPQSVTLYAEFLPMKARAKCILLIEVFWAIGTVFEVLLA 228

Mus musculus (taxid: 10090)

>sp|Q9Z2I7|SVOP_RAT Synaptic vesicle 2-related protein OS=Rattus norvegicus GN=Svop PE=1 SV=1

 Score =  131 bits (329), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 69/167 (41%), Positives = 101/167 (60%)

Query: 3   NEVVPVYTLDEALNHVGFGKFQILVLIYAGLGLVAEAMEIMILSFIGPAIKSEWNLSPAQ 62
           N     + +++A+  +GFG+FQ  + +  GL  +A+AME+MILS + P +  EW L   Q
Sbjct: 62  NPTDDTFMVEDAVEAIGFGRFQWKLSVLTGLAWMADAMEMMILSILAPQLHCEWRLPSWQ 121

Query: 63  ETLLTSVVFAGLLVGSYSWGFISDNYGRRKGLLGIAMLASVAGLLSAFSLNYLSLVTLRG 122
             LLTSVVF G++  S  WG ISD YGR+ GL          G+LSAF+  Y  ++ LRG
Sbjct: 122 VALLTSVVFIGMMSSSTLWGNISDQYGRKTGLKISVFWTLYYGILSAFAPVYSWILVLRG 181

Query: 123 LVGIGLGSGPVCLSWFLEFIPASNRGMWMVVISIFWTLGTIFEAALA 169
           LVG G+G  P  ++ + EF+P   R   +++I +FW +GT+FE  LA
Sbjct: 182 LVGFGIGGVPQSVTLYAEFLPMKARAKCILLIEVFWAIGTVFEVLLA 228

Rattus norvegicus (taxid: 10116)

>sp|Q1LVS8|SVOPL_DANRE Putative transporter SVOPL OS=Danio rerio GN=svopl PE=2 SV=1

 Score =  110 bits (275), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 60/156 (38%), Positives = 92/156 (58%)

Query: 8   VYTLDEALNHVGFGKFQILVLIYAGLGLVAEAMEIMILSFIGPAIKSEWNLSPAQETLLT 67
            YT++EA+  +GFG F IL+ +  G   + EAMEIM+L+ + P I+ EW+L   Q  L++
Sbjct: 48  CYTVEEAVESIGFGCFHILLFVIMGSANIVEAMEIMLLAVVSPEIRCEWHLEDWQVALVS 107

Query: 68  SVVFAGLLVGSYSWGFISDNYGRRKGLLGIAMLASVAGLLSAFSLNYLSLVTLRGLVGIG 127
           ++VF G +V     G+I+D YGR K + G  + AS    L++FS +Y   + LR +VG G
Sbjct: 108 TMVFFGFMVCGVLCGYIADKYGRWKVVFGGFVWASYFSFLTSFSTSYGWFIFLRCMVGCG 167

Query: 128 LGSGPVCLSWFLEFIPASNRGMWMVVISIFWTLGTI 163
           + +         EFIPA  R   + + SIFW +G+I
Sbjct: 168 VAATSQGFVLKTEFIPAKYRAYLLPLASIFWMMGSI 203

Danio rerio (taxid: 7955)

>sp|Q6PDF3|SVOPL_MOUSE Putative transporter SVOPL OS=Mus musculus GN=Svopl PE=2 SV=1

 Score = 99.0 bits (245), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 56/168 (33%), Positives = 94/168 (55%)

Query: 2   DNEVVPVYTLDEALNHVGFGKFQILVLIYAGLGLVAEAMEIMILSFIGPAIKSEWNLSPA 61
             +    +T+++A+  +GFG+F I + +  G   V EAMEIM+++ + P I+ EW L   
Sbjct: 25  QQKETKTFTVEDAVETIGFGRFHIALFLIMGSTGVVEAMEIMLIAVVSPVIRCEWQLENW 84

Query: 62  QETLLTSVVFAGLLVGSYSWGFISDNYGRRKGLLGIAMLASVAGLLSAFSLNYLSLVTLR 121
           Q   +T++VF G +V S  +G ++D YGR K LL   +  +   LL++FS +Y+  V LR
Sbjct: 85  QVAFVTTMVFFGYMVSSILFGLLADRYGRWKILLLSFLWGAYFSLLTSFSPSYIWFVFLR 144

Query: 122 GLVGIGLGSGPVCLSWFLEFIPASNRGMWMVVISIFWTLGTIFEAALA 169
            +VG G+      L    EF+P   RG  + +  +FW  G++   ++A
Sbjct: 145 TMVGCGVSGHAQGLIIKTEFLPTKYRGYMLPLSQVFWLAGSLLIISMA 192

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	179
255573803	498	sugar transporter, putative [Ricinus com	0.944	0.339	0.710	1e-61
383932368	482	MFS [Gossypium hirsutum]	0.949	0.352	0.705	7e-60
326509965	494	predicted protein [Hordeum vulgare subsp	0.949	0.344	0.647	3e-59
356523480	558	PREDICTED: synaptic vesicle 2-related pr	0.916	0.293	0.664	1e-58
224095100	463	predicted protein [Populus trichocarpa]	0.916	0.354	0.658	3e-58
90265074	489	H0702G05.6 [Oryza sativa Indica Group]	0.949	0.347	0.605	2e-57
224118680	492	predicted protein [Populus trichocarpa]	0.949	0.345	0.7	3e-57
242039569	491	hypothetical protein SORBIDRAFT_01g02099	0.905	0.329	0.654	3e-57
413934140	500	hypothetical protein ZEAMMB73_097319 [Ze	0.905	0.324	0.648	6e-57
224031871	496	unknown [Zea mays] gi|238909026|gb|ACN35	0.905	0.326	0.648	7e-57

>gi|255573803|ref|XP_002527821.1| sugar transporter, putative [Ricinus communis] gi|223532795|gb|EEF34573.1| sugar transporter, putative [Ricinus communis]

 Score =  241 bits (614), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 120/169 (71%), Positives = 137/169 (81%)

Query: 2   DNEVVPVYTLDEALNHVGFGKFQILVLIYAGLGLVAEAMEIMILSFIGPAIKSEWNLSPA 61
           +  ++  YTLDEAL  VGFGKFQ LVL+YAGLG  AEAME+MILSF+GPA+KSEW LS +
Sbjct: 7   EERLLCKYTLDEALAAVGFGKFQGLVLVYAGLGSFAEAMEMMILSFVGPAVKSEWGLSSS 66

Query: 62  QETLLTSVVFAGLLVGSYSWGFISDNYGRRKGLLGIAMLASVAGLLSAFSLNYLSLVTLR 121
           QE+LLTSVVFAG+L G+YSWG ISDNYGRRKG+LG  +L   AG LS F  NY+SL+TLR
Sbjct: 67  QESLLTSVVFAGMLFGAYSWGLISDNYGRRKGILGSTLLTCGAGSLSTFCPNYISLITLR 126

Query: 122 GLVGIGLGSGPVCLSWFLEFIPASNRGMWMVVISIFWTLGTIFEAALAW 170
            LVGIGLG GPV  SWFLEF+PAS+RG WMVV S  WT GTIFEA LAW
Sbjct: 127 CLVGIGLGGGPVFSSWFLEFVPASHRGTWMVVYSTSWTFGTIFEATLAW 175

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|383932368|gb|AFH57281.1| MFS [Gossypium hirsutum]

 Score =  235 bits (599), Expect = 7e-60,   Method: Compositional matrix adjust.
 Identities = 120/170 (70%), Positives = 135/170 (79%)

Query: 1   MDNEVVPVYTLDEALNHVGFGKFQILVLIYAGLGLVAEAMEIMILSFIGPAIKSEWNLSP 60
           MD +   +YTLDEAL  VGFGKFQ  VL YAGLG  AEAMEIMILSFIG A+KSEW LS 
Sbjct: 1   MDYKAAGLYTLDEALETVGFGKFQGFVLGYAGLGWFAEAMEIMILSFIGQAVKSEWQLSS 60

Query: 61  AQETLLTSVVFAGLLVGSYSWGFISDNYGRRKGLLGIAMLASVAGLLSAFSLNYLSLVTL 120
            QE+LL++VVFAG+L+G+ +WG +SDNYGRRKG L I+M+   AGLLS FS NYL+L  L
Sbjct: 61  GQESLLSTVVFAGMLLGANTWGLLSDNYGRRKGFLTISMVTFGAGLLSTFSPNYLTLALL 120

Query: 121 RGLVGIGLGSGPVCLSWFLEFIPASNRGMWMVVISIFWTLGTIFEAALAW 170
           RGLVG GLG   V LSWFLEFIPASNRGMWMVV S FWT G+IFEA LAW
Sbjct: 121 RGLVGFGLGGSSVFLSWFLEFIPASNRGMWMVVFSTFWTFGSIFEATLAW 170

Source: Gossypium hirsutum

Species: Gossypium hirsutum

Genus: Gossypium

Family: Malvaceae

Order: Malvales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|326509965|dbj|BAJ87199.1| predicted protein [Hordeum vulgare subsp. vulgare]

 Score =  233 bits (593), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 110/170 (64%), Positives = 141/170 (82%)

Query: 1   MDNEVVPVYTLDEALNHVGFGKFQILVLIYAGLGLVAEAMEIMILSFIGPAIKSEWNLSP 60
           M++E    YT+D+AL   GFGK+QIL+L YAG+GL+AEAME+M+LSF+GP+++ EWNL+ 
Sbjct: 1   MEDEQSATYTVDDALISSGFGKYQILILAYAGIGLIAEAMEMMLLSFVGPSVQLEWNLTA 60

Query: 61  AQETLLTSVVFAGLLVGSYSWGFISDNYGRRKGLLGIAMLASVAGLLSAFSLNYLSLVTL 120
            QE+++TSVVF G+L+G+YSWG +SDNYGRRKG L  A++ S AG LS+FS NYLSL+ L
Sbjct: 61  HQESMITSVVFVGMLIGAYSWGVVSDNYGRRKGFLFTAIMTSGAGFLSSFSPNYLSLMAL 120

Query: 121 RGLVGIGLGSGPVCLSWFLEFIPASNRGMWMVVISIFWTLGTIFEAALAW 170
           R LVGIGLG GPV  SWFLEF+PA +RG WMVV+  FWT+GTIFEA+LAW
Sbjct: 121 RFLVGIGLGGGPVLGSWFLEFVPAPSRGTWMVVLLAFWTVGTIFEASLAW 170

Source: Hordeum vulgare subsp. vulgare

Species: Hordeum vulgare

Genus: Hordeum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356523480|ref|XP_003530366.1| PREDICTED: synaptic vesicle 2-related protein-like [Glycine max]

 Score =  231 bits (588), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 109/164 (66%), Positives = 136/164 (82%)

Query: 7   PVYTLDEALNHVGFGKFQILVLIYAGLGLVAEAMEIMILSFIGPAIKSEWNLSPAQETLL 66
           P YT+D+AL  +GFG FQILVL YAG+G V+EAME+M+LSF+GPA+++ WNLS  +E+L+
Sbjct: 78  PTYTVDDALVALGFGNFQILVLAYAGVGWVSEAMEMMLLSFVGPAVQTAWNLSAHEESLI 137

Query: 67  TSVVFAGLLVGSYSWGFISDNYGRRKGLLGIAMLASVAGLLSAFSLNYLSLVTLRGLVGI 126
           TSVVFAG+L+G+YSWG +SD +GRRKG L  A + ++AG LSAF+ NY+ L+ LR LVGI
Sbjct: 138 TSVVFAGMLIGAYSWGIVSDKHGRRKGFLITATVTALAGFLSAFAPNYIFLIVLRSLVGI 197

Query: 127 GLGSGPVCLSWFLEFIPASNRGMWMVVISIFWTLGTIFEAALAW 170
           GLG GPV  SWFLEF+PA NRG WMVV S FWTLGTIFEA+LAW
Sbjct: 198 GLGGGPVLSSWFLEFVPAPNRGTWMVVFSAFWTLGTIFEASLAW 241

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224095100|ref|XP_002310345.1| predicted protein [Populus trichocarpa] gi|222853248|gb|EEE90795.1| predicted protein [Populus trichocarpa]

 Score =  229 bits (584), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 108/164 (65%), Positives = 134/164 (81%)

Query: 7   PVYTLDEALNHVGFGKFQILVLIYAGLGLVAEAMEIMILSFIGPAIKSEWNLSPAQETLL 66
           P YT+DEAL  VGFGKFQ LVL+YAG+G V+EAME+MILSF+GPA+ S+W L+  +E+L+
Sbjct: 6   PRYTVDEALVTVGFGKFQFLVLLYAGMGWVSEAMEVMILSFVGPAVHSKWGLTSHEESLI 65

Query: 67  TSVVFAGLLVGSYSWGFISDNYGRRKGLLGIAMLASVAGLLSAFSLNYLSLVTLRGLVGI 126
           T+VVFAG+LVG+Y+WG ISD YGRRKG    A++ SVAG LSAF+ NY++L+  R LVG 
Sbjct: 66  TTVVFAGMLVGAYTWGVISDKYGRRKGFFVTAIMTSVAGFLSAFAPNYIALLISRCLVGF 125

Query: 127 GLGSGPVCLSWFLEFIPASNRGMWMVVISIFWTLGTIFEAALAW 170
           G+G GPV L+WFLEF+PA NRG WMVV S FWT+GTIFE  LAW
Sbjct: 126 GIGGGPVLLAWFLEFVPAPNRGTWMVVFSAFWTVGTIFEGGLAW 169

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|90265074|emb|CAH67747.1| H0702G05.6 [Oryza sativa Indica Group]

 Score =  227 bits (578), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 103/170 (60%), Positives = 139/170 (81%)

Query: 1   MDNEVVPVYTLDEALNHVGFGKFQILVLIYAGLGLVAEAMEIMILSFIGPAIKSEWNLSP 60
           M+ +    Y++D+AL   GFG++QIL+L YAG+GL+AEAME+M+LSF+GP+++ EW L+ 
Sbjct: 1   MEEDQSATYSVDDALLSSGFGRYQILILSYAGVGLIAEAMEMMLLSFVGPSVQLEWKLTS 60

Query: 61  AQETLLTSVVFAGLLVGSYSWGFISDNYGRRKGLLGIAMLASVAGLLSAFSLNYLSLVTL 120
            QE+++TS+VF G+L+G+Y+WG +SDNYGRR+G L  A++ S AG LSAF+ NY+SL++L
Sbjct: 61  HQESMITSIVFVGMLIGAYTWGVVSDNYGRRRGFLFTAIVTSGAGFLSAFAPNYVSLISL 120

Query: 121 RGLVGIGLGSGPVCLSWFLEFIPASNRGMWMVVISIFWTLGTIFEAALAW 170
           R LVGIGLG GPV  SWFLEF+PA  RG WMVV S FWT+GTIFEA+LAW
Sbjct: 121 RFLVGIGLGGGPVLASWFLEFVPAPTRGTWMVVFSAFWTVGTIFEASLAW 170

Source: Oryza sativa Indica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224118680|ref|XP_002331421.1| predicted protein [Populus trichocarpa] gi|222873635|gb|EEF10766.1| predicted protein [Populus trichocarpa]

 Score =  226 bits (576), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 119/170 (70%), Positives = 138/170 (81%)

Query: 1   MDNEVVPVYTLDEALNHVGFGKFQILVLIYAGLGLVAEAMEIMILSFIGPAIKSEWNLSP 60
           MD+E   VYTLD+AL   GFGKFQ LVL YAGLG  AEAMEI+ILSF+GPA+KS+WNLS 
Sbjct: 1   MDDEDQLVYTLDDALASAGFGKFQFLVLAYAGLGWFAEAMEILILSFVGPAVKSQWNLSS 60

Query: 61  AQETLLTSVVFAGLLVGSYSWGFISDNYGRRKGLLGIAMLASVAGLLSAFSLNYLSLVTL 120
            QE+LL++VVFAG+LVG+YSWG  SD  GRR+G LGI ++ S AG LS FS NY+SL+ L
Sbjct: 61  TQESLLSTVVFAGMLVGAYSWGLFSDYCGRRQGFLGITIITSAAGFLSTFSPNYVSLLIL 120

Query: 121 RGLVGIGLGSGPVCLSWFLEFIPASNRGMWMVVISIFWTLGTIFEAALAW 170
           R LVG+GLG GPV  SWFLEF+PAS+RG WMVV S FWT GTIFEAALAW
Sbjct: 121 RCLVGVGLGGGPVFSSWFLEFVPASHRGTWMVVFSTFWTFGTIFEAALAW 170

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|242039569|ref|XP_002467179.1| hypothetical protein SORBIDRAFT_01g020990 [Sorghum bicolor] gi|241921033|gb|EER94177.1| hypothetical protein SORBIDRAFT_01g020990 [Sorghum bicolor]

 Score =  226 bits (575), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 106/162 (65%), Positives = 135/162 (83%)

Query: 9   YTLDEALNHVGFGKFQILVLIYAGLGLVAEAMEIMILSFIGPAIKSEWNLSPAQETLLTS 68
           YT+D+AL   GFG+FQIL+L YAG+GL+AEAME+M+LSF+GP+++ EW L+  QE+++TS
Sbjct: 9   YTVDDALLSSGFGRFQILILSYAGIGLIAEAMEMMLLSFVGPSVQLEWKLTSHQESMITS 68

Query: 69  VVFAGLLVGSYSWGFISDNYGRRKGLLGIAMLASVAGLLSAFSLNYLSLVTLRGLVGIGL 128
           VVF G+L+G+YSWG +SDNYGRR+G L  A++ S AG LSAF+ NYLSL++LR LVGIGL
Sbjct: 69  VVFVGMLIGAYSWGVVSDNYGRRRGFLFTAIVTSGAGFLSAFAPNYLSLISLRFLVGIGL 128

Query: 129 GSGPVCLSWFLEFIPASNRGMWMVVISIFWTLGTIFEAALAW 170
           G GPV  SWFLEF+PA  RG WMVV S FWT+GTI EA+LAW
Sbjct: 129 GGGPVLGSWFLEFVPAPTRGTWMVVFSAFWTVGTILEASLAW 170

Source: Sorghum bicolor

Species: Sorghum bicolor

Genus: Sorghum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|413934140|gb|AFW68691.1| hypothetical protein ZEAMMB73_097319 [Zea mays]

 Score =  225 bits (573), Expect = 6e-57,   Method: Compositional matrix adjust.
 Identities = 105/162 (64%), Positives = 134/162 (82%)

Query: 9   YTLDEALNHVGFGKFQILVLIYAGLGLVAEAMEIMILSFIGPAIKSEWNLSPAQETLLTS 68
           YT+D+AL   GFG+FQIL+L YAG+GL+AEAME+M+LSF+GP+++ EW L+  QE+++TS
Sbjct: 18  YTVDDALLSSGFGRFQILILSYAGIGLIAEAMEMMLLSFVGPSVQLEWKLTSHQESMITS 77

Query: 69  VVFAGLLVGSYSWGFISDNYGRRKGLLGIAMLASVAGLLSAFSLNYLSLVTLRGLVGIGL 128
           VVF G+L+G+YSWG +SDNYGRR+G L  A++ S AG  SAF+ NYLSL++LR LVGIGL
Sbjct: 78  VVFVGMLIGAYSWGVVSDNYGRRRGFLFTAIMTSGAGFFSAFAPNYLSLISLRFLVGIGL 137

Query: 129 GSGPVCLSWFLEFIPASNRGMWMVVISIFWTLGTIFEAALAW 170
           G GPV  SWFLEF+PA  RG WMVV S FWT+GTI EA+LAW
Sbjct: 138 GGGPVLGSWFLEFVPAPTRGTWMVVFSAFWTVGTILEASLAW 179

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224031871|gb|ACN35011.1| unknown [Zea mays] gi|238909026|gb|ACN35622.2| unknown [Zea mays] gi|413934143|gb|AFW68694.1| hypothetical protein ZEAMMB73_097319 [Zea mays] gi|413934144|gb|AFW68695.1| hypothetical protein ZEAMMB73_097319 [Zea mays]

 Score =  225 bits (573), Expect = 7e-57,   Method: Compositional matrix adjust.
 Identities = 105/162 (64%), Positives = 134/162 (82%)

Query: 9   YTLDEALNHVGFGKFQILVLIYAGLGLVAEAMEIMILSFIGPAIKSEWNLSPAQETLLTS 68
           YT+D+AL   GFG+FQIL+L YAG+GL+AEAME+M+LSF+GP+++ EW L+  QE+++TS
Sbjct: 14  YTVDDALLSSGFGRFQILILSYAGIGLIAEAMEMMLLSFVGPSVQLEWKLTSHQESMITS 73

Query: 69  VVFAGLLVGSYSWGFISDNYGRRKGLLGIAMLASVAGLLSAFSLNYLSLVTLRGLVGIGL 128
           VVF G+L+G+YSWG +SDNYGRR+G L  A++ S AG  SAF+ NYLSL++LR LVGIGL
Sbjct: 74  VVFVGMLIGAYSWGVVSDNYGRRRGFLFTAIMTSGAGFFSAFAPNYLSLISLRFLVGIGL 133

Query: 129 GSGPVCLSWFLEFIPASNRGMWMVVISIFWTLGTIFEAALAW 170
           G GPV  SWFLEF+PA  RG WMVV S FWT+GTI EA+LAW
Sbjct: 134 GGGPVLGSWFLEFVPAPTRGTWMVVFSAFWTVGTILEASLAW 175

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	179
TAIR|locus:2089270	500	NiaP "nicotinate transporter"	0.905	0.324	0.672	4.6e-57
WB|WBGene00014021	520	svop-1 [Caenorhabditis elegans	0.905	0.311	0.413	2.2e-34
UNIPROTKB|F6XK47	483	SVOP "Uncharacterized protein"	0.899	0.333	0.428	4.7e-32
UNIPROTKB|G3MZU5	547	SVOP "Synaptic vesicle 2-relat	0.932	0.305	0.419	5.9e-32
UNIPROTKB|Q1JP63	548	SVOP "Synaptic vesicle 2-relat	0.932	0.304	0.419	6e-32
UNIPROTKB|Q8N4V2	548	SVOP "Synaptic vesicle 2-relat	0.932	0.304	0.419	6e-32
UNIPROTKB|E2QZ16	548	SVOP "Uncharacterized protein"	0.932	0.304	0.419	7.7e-32
UNIPROTKB|F1RGB1	548	SVOP "Uncharacterized protein"	0.932	0.304	0.419	7.7e-32
MGI|MGI:1915916	548	Svop "SV2 related protein" [Mu	0.932	0.304	0.413	2.2e-31
UNIPROTKB|F1NIB3	554	SVOP "Uncharacterized protein"	0.899	0.290	0.422	3.1e-31

TAIR|locus:2089270 NiaP "nicotinate transporter" [Arabidopsis thaliana (taxid:3702)]

 Score = 587 (211.7 bits), Expect = 4.6e-57, P = 4.6e-57
 Identities = 109/162 (67%), Positives = 135/162 (83%)

Query:     9 YTLDEALNHVGFGKFQILVLIYAGLGLVAEAMEIMILSFIGPAIKSEWNLSPAQETLLTS 68
             +T+DEAL  +GFGKFQI VL YAG+G VAEAME+M+LSF+GPA++S WNLS  QE+L+TS
Sbjct:     8 FTVDEALVAMGFGKFQIYVLAYAGMGWVAEAMEMMLLSFVGPAVQSLWNLSARQESLITS 67

Query:    69 VVFAGLLVGSYSWGFISDNYGRRKGLLGIAMLASVAGLLSAFSLNYLSLVTLRGLVGIGL 128
             VVFAG+L+G+YSWG +SD +GRRKG +  A++  VAG LSAFS NY+ L+ LR LVG+GL
Sbjct:    68 VVFAGMLIGAYSWGIVSDKHGRRKGFIITAVVTFVAGFLSAFSPNYMWLIILRCLVGLGL 127

Query:   129 GSGPVCLSWFLEFIPASNRGMWMVVISIFWTLGTIFEAALAW 170
             G GPV  SW+LEFIPA +RG WMVV S FWT+GTIFEA+LAW
Sbjct:   128 GGGPVLASWYLEFIPAPSRGTWMVVFSAFWTVGTIFEASLAW 169

GO:0005215 "transporter activity" evidence=IEA

GO:0005351 "sugar:hydrogen symporter activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006810 "transport" evidence=IEA

GO:0015144 "carbohydrate transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0022857 "transmembrane transporter activity" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0090416 "nicotinate transporter activity" evidence=IDA

GO:0090417 "N-methylnicotinate transporter activity" evidence=IDA

GO:2001142 "nicotinate transport" evidence=IDA

GO:2001143 "N-methylnicotinate transport" evidence=IDA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0006865 "amino acid transport" evidence=RCA

GO:0009693 "ethylene biosynthetic process" evidence=RCA

GO:0009827 "plant-type cell wall modification" evidence=RCA

GO:0009860 "pollen tube growth" evidence=RCA

GO:0009863 "salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0015706 "nitrate transport" evidence=RCA

GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=RCA

WB|WBGene00014021 svop-1 [Caenorhabditis elegans (taxid:6239)]

 Score = 373 (136.4 bits), Expect = 2.2e-34, P = 2.2e-34
 Identities = 67/162 (41%), Positives = 108/162 (66%)

Query:     9 YTLDEALNHVGFGKFQILVLIYAGLGLVAEAMEIMILSFIGPAIKSEWNLSPAQETLLTS 68
             +T+DEA+  +GFG+FQ+ + I  G+  +A+AME+M+LS I PA+  EW +S  Q+ L+T+
Sbjct:    67 FTVDEAVEALGFGRFQLKLSILTGMAWMADAMEMMLLSLISPALACEWGISSVQQALVTT 126

Query:    69 VVFAGLLVGSYSWGFISDNYGRRKGLLGIAMLASVAGLLSAFSLNYLSLVTLRGLVGIGL 128
              VF+G+++ S  WG I D +GRRKGL    ++A + G++S  S ++  L+  RGL G G+
Sbjct:   127 CVFSGMMLSSTFWGKICDRFGRRKGLTFSTLVACIMGVISGMSPHFYVLLFFRGLTGFGI 186

Query:   129 GSGPVCLSWFLEFIPASNRGMWMVVISIFWTLGTIFEAALAW 170
             G  P  ++ + EF+P + R   +V+I  FW +G +FEA LA+
Sbjct:   187 GGVPQSVTLYAEFLPTAQRAKCVVLIESFWAIGAVFEALLAY 228

GO:0015075 "ion transmembrane transporter activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0034220 "ion transmembrane transport" evidence=IEA

GO:0022857 "transmembrane transporter activity" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

UNIPROTKB|F6XK47 SVOP "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 351 (128.6 bits), Expect = 4.7e-32, P = 4.7e-32
 Identities = 69/161 (42%), Positives = 101/161 (62%)

Query:     9 YTLDEALNHVGFGKFQILVLIYAGLGLVAEAMEIMILSFIGPAIKSEWNLSPAQETLLTS 68
             + +++A+  +GFGKFQ  + +  GL  +A+AME+MILS + P +  EW L   Q  LLTS
Sbjct:     3 FMVEDAVEAIGFGKFQWKLSVLTGLAWMADAMEMMILSILAPQLHCEWRLPSWQVALLTS 62

Query:    69 VVFAGLLVGSYSWGFISDNYGRRKGLLGIAMLASVAGLLSAFSLNYLSLVTLRGLVGIGL 128
             VVF G++  S  WG ISD YGR+ GL    +     G+LSAF+  Y  ++ LRGLVG G+
Sbjct:    63 VVFVGMMSSSTLWGNISDQYGRKTGLKISVLWTLYYGILSAFAPVYSWILVLRGLVGFGI 122

Query:   129 GSGPVCLSWFLEFIPASNRGMWMVVISIFWTLGTIFEAALA 169
             G  P  ++ + EF+P   R   +++I +FW +GT+FE  LA
Sbjct:   123 GGVPQSVTLYAEFLPMKARAKCILLIEVFWAIGTVFEVILA 163

GO:0016021 "integral to membrane" evidence=IEA

GO:0022857 "transmembrane transporter activity" evidence=IEA

UNIPROTKB|G3MZU5 SVOP "Synaptic vesicle 2-related protein" [Bos taurus (taxid:9913)]

 Score = 353 (129.3 bits), Expect = 5.9e-32, P = 5.9e-32
 Identities = 70/167 (41%), Positives = 102/167 (61%)

Query:     3 NEVVPVYTLDEALNHVGFGKFQILVLIYAGLGLVAEAMEIMILSFIGPAIKSEWNLSPAQ 62
             N     + +++A+  +GFGKFQ  + +  GL  +A+AME+MILS + P +  EW L   Q
Sbjct:    61 NPTDDTFMVEDAVEAIGFGKFQWKLSVLTGLAWMADAMEMMILSILAPQLHCEWRLPSWQ 120

Query:    63 ETLLTSVVFAGLLVGSYSWGFISDNYGRRKGLLGIAMLASVAGLLSAFSLNYLSLVTLRG 122
               LLTSVVF G++  S  WG ISD YGR+ GL    +     G+LSAF+  Y  ++ LRG
Sbjct:   121 VALLTSVVFVGMMSSSTLWGNISDQYGRKTGLKISVLWTLYYGILSAFAPVYSWILVLRG 180

Query:   123 LVGIGLGSGPVCLSWFLEFIPASNRGMWMVVISIFWTLGTIFEAALA 169
             LVG G+G  P  ++ + EF+P   R   +++I +FW +GT+FE  LA
Sbjct:   181 LVGFGIGGVPQSVTLYAEFLPMKARAKCILLIEVFWAIGTVFEVVLA 227

GO:0016021 "integral to membrane" evidence=IEA

GO:0015075 "ion transmembrane transporter activity" evidence=IEA

UNIPROTKB|Q1JP63 SVOP "Synaptic vesicle 2-related protein" [Bos taurus (taxid:9913)]

 Score = 353 (129.3 bits), Expect = 6.0e-32, P = 6.0e-32
 Identities = 70/167 (41%), Positives = 102/167 (61%)

Query:     3 NEVVPVYTLDEALNHVGFGKFQILVLIYAGLGLVAEAMEIMILSFIGPAIKSEWNLSPAQ 62
             N     + +++A+  +GFGKFQ  + +  GL  +A+AME+MILS + P +  EW L   Q
Sbjct:    62 NPTDDTFMVEDAVEAIGFGKFQWKLSVLTGLAWMADAMEMMILSILAPQLHCEWRLPSWQ 121

Query:    63 ETLLTSVVFAGLLVGSYSWGFISDNYGRRKGLLGIAMLASVAGLLSAFSLNYLSLVTLRG 122
               LLTSVVF G++  S  WG ISD YGR+ GL    +     G+LSAF+  Y  ++ LRG
Sbjct:   122 VALLTSVVFVGMMSSSTLWGNISDQYGRKTGLKISVLWTLYYGILSAFAPVYSWILVLRG 181

Query:   123 LVGIGLGSGPVCLSWFLEFIPASNRGMWMVVISIFWTLGTIFEAALA 169
             LVG G+G  P  ++ + EF+P   R   +++I +FW +GT+FE  LA
Sbjct:   182 LVGFGIGGVPQSVTLYAEFLPMKARAKCILLIEVFWAIGTVFEVVLA 228

GO:0030672 "synaptic vesicle membrane" evidence=IEA

GO:0030054 "cell junction" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0015075 "ion transmembrane transporter activity" evidence=IEA

UNIPROTKB|Q8N4V2 SVOP "Synaptic vesicle 2-related protein" [Homo sapiens (taxid:9606)]

 Score = 353 (129.3 bits), Expect = 6.0e-32, P = 6.0e-32
 Identities = 70/167 (41%), Positives = 102/167 (61%)

Query:     3 NEVVPVYTLDEALNHVGFGKFQILVLIYAGLGLVAEAMEIMILSFIGPAIKSEWNLSPAQ 62
             N     + +++A+  +GFGKFQ  + +  GL  +A+AME+MILS + P +  EW L   Q
Sbjct:    62 NPTDDTFMVEDAVEAIGFGKFQWKLSVLTGLAWMADAMEMMILSILAPQLHCEWRLPSWQ 121

Query:    63 ETLLTSVVFAGLLVGSYSWGFISDNYGRRKGLLGIAMLASVAGLLSAFSLNYLSLVTLRG 122
               LLTSVVF G++  S  WG ISD YGR+ GL    +     G+LSAF+  Y  ++ LRG
Sbjct:   122 VALLTSVVFVGMMSSSTLWGNISDQYGRKTGLKISVLWTLYYGILSAFAPVYSWILVLRG 181

Query:   123 LVGIGLGSGPVCLSWFLEFIPASNRGMWMVVISIFWTLGTIFEAALA 169
             LVG G+G  P  ++ + EF+P   R   +++I +FW +GT+FE  LA
Sbjct:   182 LVGFGIGGVPQSVTLYAEFLPMKARAKCILLIEVFWAIGTVFEVVLA 228

GO:0015075 "ion transmembrane transporter activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0030054 "cell junction" evidence=IEA

GO:0030672 "synaptic vesicle membrane" evidence=IEA

GO:0008021 "synaptic vesicle" evidence=ISS

UNIPROTKB|E2QZ16 SVOP "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 352 (129.0 bits), Expect = 7.7e-32, P = 7.7e-32
 Identities = 70/167 (41%), Positives = 102/167 (61%)

Query:     3 NEVVPVYTLDEALNHVGFGKFQILVLIYAGLGLVAEAMEIMILSFIGPAIKSEWNLSPAQ 62
             N     + +++A+  +GFGKFQ  + +  GL  +A+AME+MILS + P +  EW L   Q
Sbjct:    62 NPTDDTFMVEDAVEAIGFGKFQWKLSVLTGLAWMADAMEMMILSILAPQLHCEWRLPSWQ 121

Query:    63 ETLLTSVVFAGLLVGSYSWGFISDNYGRRKGLLGIAMLASVAGLLSAFSLNYLSLVTLRG 122
               LLTSVVF G++  S  WG ISD YGR+ GL    +     G+LSAF+  Y  ++ LRG
Sbjct:   122 VALLTSVVFVGMMSSSTLWGNISDQYGRKTGLKISVLWTLYYGILSAFAPVYSWILVLRG 181

Query:   123 LVGIGLGSGPVCLSWFLEFIPASNRGMWMVVISIFWTLGTIFEAALA 169
             LVG G+G  P  ++ + EF+P   R   +++I +FW +GT+FE  LA
Sbjct:   182 LVGFGIGGVPQSVTLYAEFLPMKARAKCILLIEVFWAIGTVFEVILA 228

GO:0016021 "integral to membrane" evidence=IEA

GO:0015075 "ion transmembrane transporter activity" evidence=IEA

UNIPROTKB|F1RGB1 SVOP "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 352 (129.0 bits), Expect = 7.7e-32, P = 7.7e-32
 Identities = 70/167 (41%), Positives = 102/167 (61%)

Query:     3 NEVVPVYTLDEALNHVGFGKFQILVLIYAGLGLVAEAMEIMILSFIGPAIKSEWNLSPAQ 62
             N     + +++A+  +GFGKFQ  + +  GL  +A+AME+MILS + P +  EW L   Q
Sbjct:    62 NPTDDTFMVEDAVEAIGFGKFQWKLSVLTGLAWMADAMEMMILSILAPQLHCEWRLPSWQ 121

Query:    63 ETLLTSVVFAGLLVGSYSWGFISDNYGRRKGLLGIAMLASVAGLLSAFSLNYLSLVTLRG 122
               LLTSVVF G++  S  WG ISD YGR+ GL    +     G+LSAF+  Y  ++ LRG
Sbjct:   122 VALLTSVVFVGMMSSSTLWGNISDQYGRKTGLKISVLWTLYYGILSAFAPVYSWILVLRG 181

Query:   123 LVGIGLGSGPVCLSWFLEFIPASNRGMWMVVISIFWTLGTIFEAALA 169
             LVG G+G  P  ++ + EF+P   R   +++I +FW +GT+FE  LA
Sbjct:   182 LVGFGIGGVPQSVTLYAEFLPMKARAKCILLIEVFWAIGTVFEVILA 228

GO:0016021 "integral to membrane" evidence=IEA

GO:0015075 "ion transmembrane transporter activity" evidence=IEA

MGI|MGI:1915916 Svop "SV2 related protein" [Mus musculus (taxid:10090)]

 Score = 348 (127.6 bits), Expect = 2.2e-31, P = 2.2e-31
 Identities = 69/167 (41%), Positives = 102/167 (61%)

Query:     3 NEVVPVYTLDEALNHVGFGKFQILVLIYAGLGLVAEAMEIMILSFIGPAIKSEWNLSPAQ 62
             N     + +++A+  +GFG+FQ  + +  GL  +A+AME+MILS + P +  EW L   Q
Sbjct:    62 NPTDDTFMVEDAVEAIGFGRFQWKLSVLTGLAWMADAMEMMILSILAPQLHCEWRLPSWQ 121

Query:    63 ETLLTSVVFAGLLVGSYSWGFISDNYGRRKGLLGIAMLASVAGLLSAFSLNYLSLVTLRG 122
               LLTSVVF G++  S  WG ISD YGR+ GL    +     G+LSAF+  Y  ++ LRG
Sbjct:   122 VALLTSVVFIGMMSSSTLWGNISDQYGRKTGLKISVLWTLYYGILSAFAPVYSWILVLRG 181

Query:   123 LVGIGLGSGPVCLSWFLEFIPASNRGMWMVVISIFWTLGTIFEAALA 169
             LVG G+G  P  ++ + EF+P   R   +++I +FW +GT+FE  LA
Sbjct:   182 LVGFGIGGVPQSVTLYAEFLPMKARAKCILLIEVFWAIGTVFEVLLA 228

GO:0006810 "transport" evidence=IEA

GO:0008021 "synaptic vesicle" evidence=ISO

GO:0015075 "ion transmembrane transporter activity" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0022857 "transmembrane transporter activity" evidence=IEA

GO:0030054 "cell junction" evidence=IEA

GO:0031410 "cytoplasmic vesicle" evidence=IEA

GO:0034220 "ion transmembrane transport" evidence=IEA

GO:0045202 "synapse" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

UNIPROTKB|F1NIB3 SVOP "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 347 (127.2 bits), Expect = 3.1e-31, P = 3.1e-31
 Identities = 68/161 (42%), Positives = 100/161 (62%)

Query:     9 YTLDEALNHVGFGKFQILVLIYAGLGLVAEAMEIMILSFIGPAIKSEWNLSPAQETLLTS 68
             + +++A+  +GFGKFQ  + +  GL  +A+AME+MILS + P +  EW L   Q  LLTS
Sbjct:    74 FMVEDAVEAIGFGKFQWKLSVITGLAWMADAMEMMILSILAPQLHCEWRLPSWQVALLTS 133

Query:    69 VVFAGLLVGSYSWGFISDNYGRRKGLLGIAMLASVAGLLSAFSLNYLSLVTLRGLVGIGL 128
             VVF G++  S  WG ISD YGR+ GL    +     G+LS F+  Y  ++ LRGLVG G+
Sbjct:   134 VVFVGMMSSSTLWGNISDQYGRKTGLKISVLWTLYYGILSGFAPIYSWILVLRGLVGFGI 193

Query:   129 GSGPVCLSWFLEFIPASNRGMWMVVISIFWTLGTIFEAALA 169
             G  P  ++ + EF+P   R   +++I +FW +GT+FE  LA
Sbjct:   194 GGVPQSVTLYAEFLPMKARAKCILLIEVFWAIGTVFEVLLA 234

GO:0022857 "transmembrane transporter activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	179
TIGR00898	505	TIGR00898, 2A0119, cation transport protein	1e-25
TIGR01299	742	TIGR01299, synapt_SV2, synaptic vesicle protein SV	2e-24
TIGR00895	398	TIGR00895, 2A0115, benzoate transport	3e-18
pfam00083	449	pfam00083, Sugar_tr, Sugar (and other) transporter	2e-10
cd06174	352	cd06174, MFS, The Major Facilitator Superfamily (M	5e-10
pfam07690	346	pfam07690, MFS_1, Major Facilitator Superfamily	2e-08
TIGR00879	481	TIGR00879, SP, MFS transporter, sugar porter (SP)	5e-07
TIGR00893	399	TIGR00893, 2A0114, D-galactonate transporter	1e-06
PRK12307	426	PRK12307, PRK12307, putative sialic acid transport	3e-06
TIGR00891	405	TIGR00891, 2A0112, putative sialic acid transporte	4e-06
TIGR00886	366	TIGR00886, 2A0108, nitrite extrusion protein (nitr	1e-05
PRK11551	406	PRK11551, PRK11551, putative 3-hydroxyphenylpropio	6e-05
TIGR00710	385	TIGR00710, efflux_Bcr_CflA, drug resistance transp	1e-04
PRK03893	496	PRK03893, PRK03893, putative sialic acid transport	2e-04
COG2814	394	COG2814, AraJ, Arabinose efflux permease [Carbohyd	4e-04
PRK11043	401	PRK11043, PRK11043, putative transporter; Provisio	5e-04

>gnl|CDD|233176 TIGR00898, 2A0119, cation transport protein

 Score =  102 bits (255), Expect = 1e-25
 Identities = 50/168 (29%), Positives = 86/168 (51%), Gaps = 7/168 (4%)

Query: 9   YTLDEALNHVGFGKFQILVLIYAGLGLVAEAMEIMILSF--IGPAIKSEWNLSPA---QE 63
           + +D+  N    G    L L   GL      ++    S+      I +EW+L      + 
Sbjct: 71  FMVDQWANPSLLGCEP-LKLSDLGLAATEPCLDGWEYSYDTFSSTIVTEWDLVCEDAWKV 129

Query: 64  TLLTSVVFAGLLVGSYSWGFISDNYGRRKGLLGIAMLASVAGLLSAFSLNYLSLVTLRGL 123
            L  S  F G+L+GS+ +G++SD +GR+K LL   ++ +V+G+L+AFS NY   +  R L
Sbjct: 130 DLTQSCFFVGVLLGSFVFGYLSDRFGRKKVLLLSTLVTAVSGVLTAFSPNYTVFLVFRLL 189

Query: 124 VGIGL-GSGPVCLSWFLEFIPASNRGMWMVVISIFWTLGTIFEAALAW 170
           VG+G+ G     +    EF+P   R +   +I +F++LG +    +A+
Sbjct: 190 VGMGIGGIWVQAVVLNTEFLPKKQRAIVGTLIQVFFSLGLVLLPLVAY 237

[Transport and binding proteins, Cations and iron carrying compounds]. Length = 505

>gnl|CDD|130366 TIGR01299, synapt_SV2, synaptic vesicle protein SV2

 Score = 98.9 bits (246), Expect = 2e-24
 Identities = 47/160 (29%), Positives = 87/160 (54%), Gaps = 1/160 (0%)

Query: 15  LNHVGFGKFQILVLIYAGLGLVAEAMEIMILSFIGPAIKSEWNLSPAQETLLTSVVFAGL 74
           +   G G+FQ  +    GL L+A+ +E+ ++ F+ P+ + +  +  + + +L  +V+ G+
Sbjct: 156 IQECGHGRFQWALFFVLGLALMADGVEVFVVGFVLPSAEKDLCIPDSGKGMLGLIVYLGM 215

Query: 75  LVGSYSWGFISDNYGRRKGLLGIAMLASVAGLLSAFSLNYLSLVTLRGLVGIGLGSG-PV 133
           +VG++ WG ++D  GR++ LL    +       S+F   Y   +  R L G G+G   P+
Sbjct: 216 MVGAFFWGGLADKLGRKQCLLICLSVNGFFAFFSSFVQGYGFFLFCRLLSGFGIGGAIPI 275

Query: 134 CLSWFLEFIPASNRGMWMVVISIFWTLGTIFEAALAWGNI 173
             S+F EF+    RG  +  + +FW +G I+ AA+AW  I
Sbjct: 276 VFSYFAEFLAQEKRGEHLSWLCMFWMIGGIYAAAMAWAII 315

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by PFAM model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices. Length = 742

>gnl|CDD|233175 TIGR00895, 2A0115, benzoate transport

 Score = 80.5 bits (199), Expect = 3e-18
 Identities = 46/148 (31%), Positives = 73/148 (49%), Gaps = 1/148 (0%)

Query: 23  FQILVLIYAGLGLVAEAMEIMILSFIGPAIKSEWNLSPAQETLLTSVVFAGLLVGSYSWG 82
           +Q   +I + L ++ +  ++  + F  PAI +EW L P Q   L S    G+  G+  +G
Sbjct: 14  YQWRAIILSFLIMLMDGYDLAAMGFAAPAISAEWGLDPVQLGFLFSAGLIGMAFGALFFG 73

Query: 83  FISDNYGRRKGLLGIAMLASVAGLLSAFSLNYLSLVTLRGLVGIGLGSG-PVCLSWFLEF 141
            ++D  GRR+ LL   +L SV  LL A + N   L+ LR L G+GLG   P   +   E+
Sbjct: 74  PLADRIGRRRVLLWSILLFSVFTLLCALATNVTQLLILRFLAGLGLGGLMPNLNALVSEY 133

Query: 142 IPASNRGMWMVVISIFWTLGTIFEAALA 169
            P   RG  + ++   + +G      LA
Sbjct: 134 APKRFRGTAVGLMFCGYPIGAAVGGFLA 161

[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 398

>gnl|CDD|215702 pfam00083, Sugar_tr, Sugar (and other) transporter

 Score = 58.1 bits (141), Expect = 2e-10
 Identities = 33/120 (27%), Positives = 55/120 (45%), Gaps = 3/120 (2%)

Query: 58  LSPAQETLLTSVVFAGLLVGSYSWGFISDNYGRRKGLLGIAMLASVAGLLSAFS--LNYL 115
            S     L+ S+   G L+GS   G + D +GR+K LL   +L  +  LL  F+   ++ 
Sbjct: 43  ASTVLSGLIVSIFSVGCLIGSLFAGKLGDRFGRKKSLLIGNVLFVIGALLQGFAKGKSFY 102

Query: 116 SLVTLRGLVGIGLGSGPVCLSWFL-EFIPASNRGMWMVVISIFWTLGTIFEAALAWGNIL 174
            L+  R +VG+G+G   V +  ++ E  P   RG    +  +  T G +  A +  G   
Sbjct: 103 MLIVGRVIVGLGVGGISVLVPMYISEIAPKKLRGALGSLYQLGITFGILVAAIIGLGLNK 162

Length = 449

>gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

 Score = 56.9 bits (138), Expect = 5e-10
 Identities = 42/143 (29%), Positives = 70/143 (48%), Gaps = 1/143 (0%)

Query: 28  LIYAGLGLVAEAMEIMILSFIGPAIKSEWNLSPAQETLLTSVVFAGLLVGSYSWGFISDN 87
           L+   LG     ++  +LS   P +  +  LS +Q  L+ S    G  +GS   G++SD 
Sbjct: 1   LLLLFLGFFLSGLDRGLLSPALPLLAEDLGLSASQAGLIVSAFSLGYALGSLLAGYLSDR 60

Query: 88  YGRRKGLLGIAMLASVAGLLSAFSLNYLSLVTLRGLVGIGLGSG-PVCLSWFLEFIPASN 146
           +GRR+ LL   +L ++  LL AF+ +   L+  R L+G+G G+  P   +   E+ P   
Sbjct: 61  FGRRRVLLLGLLLFALGSLLLAFASSLWLLLVGRFLLGLGGGALYPAAAALIAEWFPPKE 120

Query: 147 RGMWMVVISIFWTLGTIFEAALA 169
           RG  + + S  + LG +    L 
Sbjct: 121 RGRALGLFSAGFGLGALLGPLLG 143

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352

>gnl|CDD|219516 pfam07690, MFS_1, Major Facilitator Superfamily

 Score = 52.0 bits (125), Expect = 2e-08
 Identities = 33/138 (23%), Positives = 61/138 (44%), Gaps = 1/138 (0%)

Query: 33  LGLVAEAMEIMILSFIGPAIKSEWNLSPAQETLLTSVVFAGLLVGSYSWGFISDNYGRRK 92
              +A     ++   +   +  +  +SP +  LL +    G  +     G +SD +GRR+
Sbjct: 4   AAFLAGLGRSLLGPALPLYLAEDLGISPTEIGLLLTAFSLGYALAQPLAGRLSDRFGRRR 63

Query: 93  GLLGIAMLASVAGLLSAFSLNYLSLVTLRGLVGIGLGSG-PVCLSWFLEFIPASNRGMWM 151
            LL   +L ++  LL  F+ +   L+ LR L G+G G+  P   +   ++ P   RG  +
Sbjct: 64  VLLIGLLLFALGLLLLLFASSLWLLLVLRVLQGLGGGALFPAAAALIADWFPPEERGRAL 123

Query: 152 VVISIFWTLGTIFEAALA 169
            ++S  + LG      L 
Sbjct: 124 GLLSAGFGLGAALGPLLG 141

Length = 346

>gnl|CDD|233165 TIGR00879, SP, MFS transporter, sugar porter (SP) family

 Score = 48.1 bits (115), Expect = 5e-07
 Identities = 35/117 (29%), Positives = 60/117 (51%), Gaps = 4/117 (3%)

Query: 65  LLTSVVFAGLLVGSYSWGFISDNYGRRKGLLGIAMLASVAGLLS---AFSLNYLSLVTLR 121
           L+ S+   G  +G+   G++SD +GR+K LL IA+L  +  +L    AF+L+   L+  R
Sbjct: 75  LVVSIFLVGGFIGALFAGWLSDRFGRKKSLLIIALLFVIGAILMGLAAFALSVEMLIVGR 134

Query: 122 GLVGIGLG-SGPVCLSWFLEFIPASNRGMWMVVISIFWTLGTIFEAALAWGNILLNS 177
            L+GIG+G +  +   +  E  P + RG    +  +  T G +       G + LN+
Sbjct: 135 VLLGIGVGIASALVPMYLSEIAPKALRGALTSLYQLAITFGILVAYGFGSGKVSLNN 191

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 481

>gnl|CDD|233174 TIGR00893, 2A0114, D-galactonate transporter

 Score = 46.9 bits (112), Expect = 1e-06
 Identities = 29/83 (34%), Positives = 43/83 (51%)

Query: 45  LSFIGPAIKSEWNLSPAQETLLTSVVFAGLLVGSYSWGFISDNYGRRKGLLGIAMLASVA 104
           LSF  P ++ +  LS AQ   + S    G +VG +  G++ D +G RK L    ++  V 
Sbjct: 13  LSFAAPMLQEDLGLSAAQYGYVFSAFSWGYVVGQFPGGWLLDRFGARKTLAVFIVIWGVF 72

Query: 105 GLLSAFSLNYLSLVTLRGLVGIG 127
             L AF+  Y+SL  LR L+G  
Sbjct: 73  TGLQAFAGAYVSLYILRVLLGAA 95

[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 399

>gnl|CDD|237051 PRK12307, PRK12307, putative sialic acid transporter; Provisional

 Score = 46.1 bits (109), Expect = 3e-06
 Identities = 29/111 (26%), Positives = 53/111 (47%)

Query: 28  LIYAGLGLVAEAMEIMILSFIGPAIKSEWNLSPAQETLLTSVVFAGLLVGSYSWGFISDN 87
           L  A LG V +  + M++ +I   IK++  L+  +   L +  F G   G   +G ++D 
Sbjct: 20  LFSAWLGYVFDGFDFMLIFYIMYLIKADLGLTDMEGAFLATAAFIGRPFGGALFGLLADK 79

Query: 88  YGRRKGLLGIAMLASVAGLLSAFSLNYLSLVTLRGLVGIGLGSGPVCLSWF 138
           +GR+  ++   +  SV   LS  +   + L   R +VG+G+     C S +
Sbjct: 80  FGRKPLMMWSIVAYSVGTGLSGLASGVIMLTLSRFIVGMGMAGEYACASTY 130

Length = 426

>gnl|CDD|233172 TIGR00891, 2A0112, putative sialic acid transporter

 Score = 45.3 bits (107), Expect = 4e-06
 Identities = 24/97 (24%), Positives = 46/97 (47%)

Query: 33  LGLVAEAMEIMILSFIGPAIKSEWNLSPAQETLLTSVVFAGLLVGSYSWGFISDNYGRRK 92
           LG + +A +  +++ +   +  E+ L+      L S        G+  +G   D YGRR 
Sbjct: 19  LGWLLDAFDFFLVALVLAEVAGEFGLTTVDAASLISAALISRWFGALMFGLWGDRYGRRL 78

Query: 93  GLLGIAMLASVAGLLSAFSLNYLSLVTLRGLVGIGLG 129
            ++   +L S   L   F+  Y+++   R ++GIG+G
Sbjct: 79  PMVTSIVLFSAGTLACGFAPGYITMFIARLVIGIGMG 115

[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 405

>gnl|CDD|233170 TIGR00886, 2A0108, nitrite extrusion protein (nitrite facilitator)

 Score = 44.2 bits (105), Expect = 1e-05
 Identities = 29/99 (29%), Positives = 43/99 (43%), Gaps = 1/99 (1%)

Query: 51  AIKSEWNLSPAQETLLTSVVFAGLLVGSYSWGFISDNYGRRKGLLGIAMLASVAGLLSAF 110
            IK +  LS AQ   L +V      V     GF+ D +G R       +L ++  L +  
Sbjct: 27  MIKDDLGLSTAQLGNLVAVPVLAGAVLRIILGFLVDKFGPRYTTTLSLLLLAIPCLWAGL 86

Query: 111 S-LNYLSLVTLRGLVGIGLGSGPVCLSWFLEFIPASNRG 148
           +  +Y  L+ LR  +GI  GS   C+ W   F P   +G
Sbjct: 87  AVQSYSVLLLLRLFIGIAGGSFASCMPWISFFFPKKIQG 125

[Transport and binding proteins, Anions]. Length = 366

>gnl|CDD|236927 PRK11551, PRK11551, putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

 Score = 41.9 bits (99), Expect = 6e-05
 Identities = 26/80 (32%), Positives = 41/80 (51%)

Query: 50  PAIKSEWNLSPAQETLLTSVVFAGLLVGSYSWGFISDNYGRRKGLLGIAMLASVAGLLSA 109
           P +  E+ L  AQ     S    GLL G+   G ++D  GR++ L+    L  +  L +A
Sbjct: 39  PRMAQEFGLDVAQMGWAFSAGILGLLPGALLGGRLADRIGRKRILIVSVALFGLFSLATA 98

Query: 110 FSLNYLSLVTLRGLVGIGLG 129
            + ++ SL+  R L G+GLG
Sbjct: 99  QAWDFPSLLVARLLTGVGLG 118

Length = 406

>gnl|CDD|233099 TIGR00710, efflux_Bcr_CflA, drug resistance transporter, Bcr/CflA subfamily

 Score = 41.2 bits (97), Expect = 1e-04
 Identities = 28/109 (25%), Positives = 47/109 (43%), Gaps = 1/109 (0%)

Query: 25  ILVLIYAGLGLVAEAMEIMILSFIGPAIKSEWNLSPAQETLLTSVVFAGLLVGSYSWGFI 84
              L+   L ++      M L    P I ++ +   +   +  ++   G   G   WG +
Sbjct: 5   AFALLLGCLSILGPLGIDMYLPAF-PEIAADLSTPASIVQMTLTLYLLGFAAGQLLWGPL 63

Query: 85  SDNYGRRKGLLGIAMLASVAGLLSAFSLNYLSLVTLRGLVGIGLGSGPV 133
           SD YGRR  LL    + +++ L  A S N  +L+ LR +   G  +G V
Sbjct: 64  SDRYGRRPVLLLGLFIFALSSLGLALSNNIETLLVLRFVQAFGASAGSV 112

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033. Length = 385

>gnl|CDD|179668 PRK03893, PRK03893, putative sialic acid transporter; Provisional

 Score = 40.5 bits (95), Expect = 2e-04
 Identities = 26/98 (26%), Positives = 48/98 (48%)

Query: 31  AGLGLVAEAMEIMILSFIGPAIKSEWNLSPAQETLLTSVVFAGLLVGSYSWGFISDNYGR 90
           A LG + +  + ++++ +   ++ E+ L+  Q   L S  F     G    G + D YGR
Sbjct: 25  AWLGYLLDGFDFVLITLVLTEVQGEFGLTTVQAASLISAAFISRWFGGLLLGAMGDRYGR 84

Query: 91  RKGLLGIAMLASVAGLLSAFSLNYLSLVTLRGLVGIGL 128
           R  ++   +L SV  L   F+  Y +L   R ++G+G+
Sbjct: 85  RLAMVISIVLFSVGTLACGFAPGYWTLFIARLVIGMGM 122

Length = 496

>gnl|CDD|225371 COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism]

 Score = 39.5 bits (93), Expect = 4e-04
 Identities = 32/122 (26%), Positives = 52/122 (42%), Gaps = 10/122 (8%)

Query: 58  LSPAQETLLTSVVFAGLLVGSYSWGF---------ISDNYGRRKGLLGIAMLASVAGLLS 108
           L P    L  S   AG L+ +Y+ G          ++    RR+ LLG+  L  V+ LLS
Sbjct: 36  LPPIAADLGVSEGAAGQLITAYALGVALGAPLLALLTGRLERRRLLLGLLALFIVSNLLS 95

Query: 109 AFSLNYLSLVTLRGLVGIGLG-SGPVCLSWFLEFIPASNRGMWMVVISIFWTLGTIFEAA 167
           A + ++  L+  R L G+  G    +  +     +P   RG  + ++    TL T+    
Sbjct: 96  ALAPSFAVLLLARALAGLAHGVFWSIAAALAARLVPPGKRGRALALVFTGLTLATVLGVP 155

Query: 168 LA 169
           L 
Sbjct: 156 LG 157

Length = 394

>gnl|CDD|182924 PRK11043, PRK11043, putative transporter; Provisional

 Score = 39.1 bits (92), Expect = 5e-04
 Identities = 24/84 (28%), Positives = 41/84 (48%)

Query: 51  AIKSEWNLSPAQETLLTSVVFAGLLVGSYSWGFISDNYGRRKGLLGIAMLASVAGLLSAF 110
           AI+++   S +  +   S+  AG  +G   WG +SD YGR+  LL    L ++  L   +
Sbjct: 31  AIQADLQTSASAVSASLSLFLAGFALGQLLWGPLSDRYGRKPVLLAGLSLFALGSLGMLW 90

Query: 111 SLNYLSLVTLRGLVGIGLGSGPVC 134
             +   L+ LR +  +G+ S  V 
Sbjct: 91  VESAAQLLVLRFVQAVGVCSAAVI 114

Length = 401

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	179
TIGR02332	412	HpaX 4-hydroxyphenylacetate permease. This protein	99.91
TIGR01299	742	synapt_SV2 synaptic vesicle protein SV2. This mode	99.9
PRK09556	467	uhpT sugar phosphate antiporter; Reviewed	99.89
COG2814	394	AraJ Arabinose efflux permease [Carbohydrate trans	99.89
TIGR00891	405	2A0112 putative sialic acid transporter.	99.89
PRK11663	434	regulatory protein UhpC; Provisional	99.89
PRK03545	390	putative arabinose transporter; Provisional	99.88
PRK10213	394	nepI ribonucleoside transporter; Reviewed	99.88
COG2271	448	UhpC Sugar phosphate permease [Carbohydrate transp	99.88
PRK12307	426	putative sialic acid transporter; Provisional	99.88
PRK14995	495	methyl viologen resistance protein SmvA; Provision	99.88
PRK11551	406	putative 3-hydroxyphenylpropionic transporter MhpT	99.87
PRK03699	394	putative transporter; Provisional	99.87
TIGR00895	398	2A0115 benzoate transport.	99.87
PRK03893	496	putative sialic acid transporter; Provisional	99.87
KOG1330	493	consensus Sugar transporter/spinster transmembrane	99.86
PRK10133	438	L-fucose transporter; Provisional	99.86
PRK10406	432	alpha-ketoglutarate transporter; Provisional	99.86
TIGR00711	485	efflux_EmrB drug resistance transporter, EmrB/QacA	99.86
TIGR00903	368	2A0129 major facilitator 4 family protein. This fa	99.85
PLN00028	476	nitrate transmembrane transporter; Provisional	99.85
PRK10504	471	putative transporter; Provisional	99.85
TIGR00710	385	efflux_Bcr_CflA drug resistance transporter, Bcr/C	99.85
PRK09705	393	cynX putative cyanate transporter; Provisional	99.85
TIGR00806	511	rfc RFC reduced folate carrier. Proteins of the RF	99.85
PRK11273	452	glpT sn-glycerol-3-phosphate transporter; Provisio	99.85
PRK10091	382	MFS transport protein AraJ; Provisional	99.85
PRK03633	381	putative MFS family transporter protein; Provision	99.85
PRK15034	462	nitrate/nitrite transport protein NarU; Provisiona	99.85
TIGR00887	502	2A0109 phosphate:H+ symporter. This model represen	99.85
PF07690	352	MFS_1: Major Facilitator Superfamily; InterPro: IP	99.84
TIGR00894	465	2A0114euk Na(+)-dependent inorganic phosphate cotr	99.84
PRK15402	406	multidrug efflux system translocase MdfA; Provisio	99.84
PRK10077	479	xylE D-xylose transporter XylE; Provisional	99.84
PRK10642	490	proline/glycine betaine transporter; Provisional	99.84
PRK05122	399	major facilitator superfamily transporter; Provisi	99.84
PRK15075	434	citrate-proton symporter; Provisional	99.84
PRK15403	413	multidrug efflux system protein MdtM; Provisional	99.84
TIGR00893	399	2A0114 d-galactonate transporter.	99.83
PRK12382	392	putative transporter; Provisional	99.83
PRK11652	394	emrD multidrug resistance protein D; Provisional	99.83
PRK09952	438	shikimate transporter; Provisional	99.83
TIGR00886	366	2A0108 nitrite extrusion protein (nitrite facilita	99.83
TIGR00890	377	2A0111 Oxalate/Formate Antiporter.	99.82
TIGR00900	365	2A0121 H+ Antiporter protein.	99.82
TIGR00712	438	glpT glycerol-3-phosphate transporter. This model	99.82
PRK11195	393	lysophospholipid transporter LplT; Provisional	99.82
cd06174	352	MFS The Major Facilitator Superfamily (MFS) is a l	99.81
TIGR00879	481	SP MFS transporter, sugar porter (SP) family. This	99.81
PRK10473	392	multidrug efflux system protein MdtL; Provisional	99.81
TIGR00881	379	2A0104 phosphoglycerate transporter family protein	99.81
KOG2615	451	consensus Permease of the major facilitator superf	99.81
TIGR00892	455	2A0113 monocarboxylate transporter 1.	99.81
TIGR00885	410	fucP L-fucose:H+ symporter permease. This family d	99.8
PRK11043	401	putative transporter; Provisional	99.8
PRK10054	395	putative transporter; Provisional	99.8
PRK09874	408	drug efflux system protein MdtG; Provisional	99.79
PRK11102	377	bicyclomycin/multidrug efflux system; Provisional	99.79
PRK10207	489	dipeptide/tripeptide permease B; Provisional	99.78
TIGR00897	402	2A0118 polyol permease family. This family of prot	99.78
TIGR00805	633	oat sodium-independent organic anion transporter.	99.77
PRK11646	400	multidrug resistance protein MdtH; Provisional	99.77
TIGR00898	505	2A0119 cation transport protein.	99.77
TIGR00924	475	yjdL_sub1_fam amino acid/peptide transporter (Pept	99.77
COG2223	417	NarK Nitrate/nitrite transporter [Inorganic ion tr	99.75
PRK11551	406	putative 3-hydroxyphenylpropionic transporter MhpT	99.74
PTZ00207	591	hypothetical protein; Provisional	99.73
TIGR00896	355	CynX cyanate transporter. This family of proteins	99.73
TIGR00890	377	2A0111 Oxalate/Formate Antiporter.	99.73
KOG0254	513	consensus Predicted transporter (major facilitator	99.73
PRK10489	417	enterobactin exporter EntS; Provisional	99.72
PRK09584	500	tppB putative tripeptide transporter permease; Rev	99.72
TIGR00900	365	2A0121 H+ Antiporter protein.	99.71
TIGR00899	375	2A0120 sugar efflux transporter. This family of pr	99.71
PRK15462	493	dipeptide/tripeptide permease D; Provisional	99.71
TIGR00902	382	2A0127 phenyl proprionate permease family protein.	99.7
TIGR00895	398	2A0115 benzoate transport.	99.7
TIGR00891	405	2A0112 putative sialic acid transporter.	99.69
PRK15011	393	sugar efflux transporter B; Provisional	99.68
TIGR00883	394	2A0106 metabolite-proton symporter. This model rep	99.68
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	99.68
KOG0255	521	consensus Synaptic vesicle transporter SVOP and re	99.67
KOG2532	466	consensus Permease of the major facilitator superf	99.67
TIGR00896	355	CynX cyanate transporter. This family of proteins	99.66
PRK10642	490	proline/glycine betaine transporter; Provisional	99.66
TIGR01299	742	synapt_SV2 synaptic vesicle protein SV2. This mode	99.66
cd06174	352	MFS The Major Facilitator Superfamily (MFS) is a l	99.66
TIGR00899	375	2A0120 sugar efflux transporter. This family of pr	99.65
TIGR00883	394	2A0106 metabolite-proton symporter. This model rep	99.65
TIGR00889	418	2A0110 nucleoside transporter. This family of prot	99.65
PRK03545	390	putative arabinose transporter; Provisional	99.65
TIGR00897	402	2A0118 polyol permease family. This family of prot	99.65
KOG3764	464	consensus Vesicular amine transporter [Intracellul	99.64
KOG2533	495	consensus Permease of the major facilitator superf	99.64
COG0738	422	FucP Fucose permease [Carbohydrate transport and m	99.63
PRK10489	417	enterobactin exporter EntS; Provisional	99.63
PRK11010	491	ampG muropeptide transporter; Validated	99.62
PRK09528	420	lacY galactoside permease; Reviewed	99.62
PRK09556	467	uhpT sugar phosphate antiporter; Reviewed	99.62
PRK11902	402	ampG muropeptide transporter; Reviewed	99.62
KOG0252	538	consensus Inorganic phosphate transporter [Inorgan	99.62
TIGR00880	141	2_A_01_02 Multidrug resistance protein.	99.61
PF06609	599	TRI12: Fungal trichothecene efflux pump (TRI12); I	99.61
PRK11128	382	putative 3-phenylpropionic acid transporter; Provi	99.61
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	99.61
PRK03699	394	putative transporter; Provisional	99.61
PRK12382	392	putative transporter; Provisional	99.61
PRK15011	393	sugar efflux transporter B; Provisional	99.6
PRK09705	393	cynX putative cyanate transporter; Provisional	99.6
TIGR00893	399	2A0114 d-galactonate transporter.	99.6
TIGR00901	356	2A0125 AmpG-related permease.	99.6
PRK09874	408	drug efflux system protein MdtG; Provisional	99.59
PRK03633	381	putative MFS family transporter protein; Provision	99.59
PRK09952	438	shikimate transporter; Provisional	99.59
TIGR00902	382	2A0127 phenyl proprionate permease family protein.	99.58
PRK12307	426	putative sialic acid transporter; Provisional	99.58
TIGR00892	455	2A0113 monocarboxylate transporter 1.	99.58
KOG0253	528	consensus Synaptic vesicle transporter SV2 (major	99.58
PRK15075	434	citrate-proton symporter; Provisional	99.57
KOG2504	509	consensus Monocarboxylate transporter [Carbohydrat	99.56
PRK05122	399	major facilitator superfamily transporter; Provisi	99.56
PRK03893	496	putative sialic acid transporter; Provisional	99.55
PF11700	477	ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0	99.55
PRK11128	382	putative 3-phenylpropionic acid transporter; Provi	99.54
PRK10406	432	alpha-ketoglutarate transporter; Provisional	99.53
PF05977	524	MFS_3: Transmembrane secretion effector; InterPro:	99.53
KOG0569	485	consensus Permease of the major facilitator superf	99.53
TIGR00792	437	gph sugar (Glycoside-Pentoside-Hexuronide) transpo	99.53
TIGR02332	412	HpaX 4-hydroxyphenylacetate permease. This protein	99.53
TIGR00711	485	efflux_EmrB drug resistance transporter, EmrB/QacA	99.52
PRK10504	471	putative transporter; Provisional	99.52
TIGR02718	390	sider_RhtX_FptX siderophore transporter, RhtX/FptX	99.52
TIGR00901	356	2A0125 AmpG-related permease.	99.52
TIGR01301	477	GPH_sucrose GPH family sucrose/H+ symporter. This	99.52
PF00083	451	Sugar_tr: Sugar (and other) transporter; InterPro:	99.51
TIGR00882	396	2A0105 oligosaccharide:H+ symporter.	99.51
TIGR00879	481	SP MFS transporter, sugar porter (SP) family. This	99.51
TIGR00881	379	2A0104 phosphoglycerate transporter family protein	99.51
TIGR00882	396	2A0105 oligosaccharide:H+ symporter.	99.51
PRK14995	495	methyl viologen resistance protein SmvA; Provision	99.51
PRK10213	394	nepI ribonucleoside transporter; Reviewed	99.5
PF05977	524	MFS_3: Transmembrane secretion effector; InterPro:	99.5
COG2814	394	AraJ Arabinose efflux permease [Carbohydrate trans	99.49
PRK09528	420	lacY galactoside permease; Reviewed	99.49
TIGR01272	310	gluP glucose/galactose transporter. Disruption of	99.49
PRK10091	382	MFS transport protein AraJ; Provisional	99.48
PF07690	352	MFS_1: Major Facilitator Superfamily; InterPro: IP	99.48
PRK15402	406	multidrug efflux system translocase MdfA; Provisio	99.47
PRK11646	400	multidrug resistance protein MdtH; Provisional	99.46
COG2270	438	Permeases of the major facilitator superfamily [Ge	99.46
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	99.45
PRK11663	434	regulatory protein UhpC; Provisional	99.45
KOG2504	509	consensus Monocarboxylate transporter [Carbohydrat	99.44
PRK09848	448	glucuronide transporter; Provisional	99.43
TIGR00710	385	efflux_Bcr_CflA drug resistance transporter, Bcr/C	99.43
PRK10054	395	putative transporter; Provisional	99.43
PRK11273	452	glpT sn-glycerol-3-phosphate transporter; Provisio	99.43
TIGR00887	502	2A0109 phosphate:H+ symporter. This model represen	99.43
COG3104	498	PTR2 Dipeptide/tripeptide permease [Amino acid tra	99.42
PF13347	428	MFS_2: MFS/sugar transport protein	99.42
PF03825	400	Nuc_H_symport: Nucleoside H+ symporter	99.41
PRK11010	491	ampG muropeptide transporter; Validated	99.41
PRK10077	479	xylE D-xylose transporter XylE; Provisional	99.41
TIGR00889	418	2A0110 nucleoside transporter. This family of prot	99.41
KOG2325	488	consensus Predicted transporter/transmembrane prot	99.4
COG2807	395	CynX Cyanate permease [Inorganic ion transport and	99.4
TIGR00792	437	gph sugar (Glycoside-Pentoside-Hexuronide) transpo	99.37
PRK11195	393	lysophospholipid transporter LplT; Provisional	99.36
PF05631	354	DUF791: Protein of unknown function (DUF791); Inte	99.36
COG2223	417	NarK Nitrate/nitrite transporter [Inorganic ion tr	99.36
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	99.35
PRK10133	438	L-fucose transporter; Provisional	99.35
PRK15034	462	nitrate/nitrite transport protein NarU; Provisiona	99.35
TIGR00898	505	2A0119 cation transport protein.	99.34
PRK10429	473	melibiose:sodium symporter; Provisional	99.34
PRK11102	377	bicyclomycin/multidrug efflux system; Provisional	99.33
PRK09669	444	putative symporter YagG; Provisional	99.32
PRK10473	392	multidrug efflux system protein MdtL; Provisional	99.31
PRK11043	401	putative transporter; Provisional	99.31
TIGR00903	368	2A0129 major facilitator 4 family protein. This fa	99.31
TIGR00712	438	glpT glycerol-3-phosphate transporter. This model	99.31
PRK11902	402	ampG muropeptide transporter; Reviewed	99.28
KOG0569	485	consensus Permease of the major facilitator superf	99.27
PF01306	412	LacY_symp: LacY proton/sugar symporter; InterPro:	99.27
TIGR00886	366	2A0108 nitrite extrusion protein (nitrite facilita	99.27
COG2807	395	CynX Cyanate permease [Inorganic ion transport and	99.25
KOG4686	459	consensus Predicted sugar transporter [Carbohydrat	99.25
PRK11652	394	emrD multidrug resistance protein D; Provisional	99.22
TIGR02718	390	sider_RhtX_FptX siderophore transporter, RhtX/FptX	99.21
TIGR00788	468	fbt folate/biopterin transporter. The only functio	99.2
PLN00028	476	nitrate transmembrane transporter; Provisional	99.19
TIGR00885	410	fucP L-fucose:H+ symporter permease. This family d	99.18
PF06813	250	Nodulin-like: Nodulin-like; InterPro: IPR010658 Th	99.17
TIGR00894	465	2A0114euk Na(+)-dependent inorganic phosphate cotr	99.15
PRK09669	444	putative symporter YagG; Provisional	99.14
PRK11462	460	putative transporter; Provisional	99.13
PF03209	403	PUCC: PUCC protein; InterPro: IPR004896 This prote	99.13
COG0477	338	ProP Permeases of the major facilitator superfamil	99.13
COG2271	448	UhpC Sugar phosphate permease [Carbohydrate transp	99.09
COG2211	467	MelB Na+/melibiose symporter and related transport	99.07
COG0738	422	FucP Fucose permease [Carbohydrate transport and m	99.04
PRK10429	473	melibiose:sodium symporter; Provisional	99.04
PF05978	156	UNC-93: Ion channel regulatory protein UNC-93; Int	99.0
KOG0253	528	consensus Synaptic vesicle transporter SV2 (major	99.0
PF06779	85	DUF1228: Protein of unknown function (DUF1228); In	98.99
PF03825	400	Nuc_H_symport: Nucleoside H+ symporter	98.96
TIGR00924	475	yjdL_sub1_fam amino acid/peptide transporter (Pept	98.95
PRK11462	460	putative transporter; Provisional	98.91
PF13347	428	MFS_2: MFS/sugar transport protein	98.91
PRK09584	500	tppB putative tripeptide transporter permease; Rev	98.85
TIGR00788	468	fbt folate/biopterin transporter. The only functio	98.85
PRK09848	448	glucuronide transporter; Provisional	98.83
KOG2563	480	consensus Permease of the major facilitator superf	98.83
PF01306	412	LacY_symp: LacY proton/sugar symporter; InterPro:	98.81
PF12832	77	MFS_1_like: MFS_1 like family	98.81
PRK10207	489	dipeptide/tripeptide permease B; Provisional	98.78
PRK15403	413	multidrug efflux system protein MdtM; Provisional	98.76
KOG3762	618	consensus Predicted transporter [General function	98.75
TIGR00926	654	2A1704 Peptide:H+ symporter (also transports b-lac	98.67
KOG0254	513	consensus Predicted transporter (major facilitator	98.64
KOG3764	464	consensus Vesicular amine transporter [Intracellul	98.63
KOG4686	459	consensus Predicted sugar transporter [Carbohydrat	98.61
TIGR01301	477	GPH_sucrose GPH family sucrose/H+ symporter. This	98.6
PF03137	539	OATP: Organic Anion Transporter Polypeptide (OATP)	98.59
KOG2532	466	consensus Permease of the major facilitator superf	98.56
KOG2816	463	consensus Predicted transporter ADD1 (major facili	98.53
COG2211	467	MelB Na+/melibiose symporter and related transport	98.51
PF03209	403	PUCC: PUCC protein; InterPro: IPR004896 This prote	98.48
KOG2816	463	consensus Predicted transporter ADD1 (major facili	98.45
KOG0637	498	consensus Sucrose transporter and related proteins	98.43
KOG2615	451	consensus Permease of the major facilitator superf	98.39
PF00083	451	Sugar_tr: Sugar (and other) transporter; InterPro:	98.3
PF01770	412	Folate_carrier: Reduced folate carrier; InterPro:	98.3
PF06609	599	TRI12: Fungal trichothecene efflux pump (TRI12); I	98.28
PF03092	433	BT1: BT1 family; InterPro: IPR004324 Members of th	98.27
KOG2533	495	consensus Permease of the major facilitator superf	98.19
KOG0252	538	consensus Inorganic phosphate transporter [Inorgan	98.18
PRK15462	493	dipeptide/tripeptide permease D; Provisional	98.14
KOG0255	521	consensus Synaptic vesicle transporter SVOP and re	98.09
KOG3626	735	consensus Organic anion transporter [Secondary met	98.07
PF02487	402	CLN3: CLN3 protein; InterPro: IPR003492 Batten's d	98.07
PF11700	477	ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0	98.06
PTZ00207	591	hypothetical protein; Provisional	98.01
TIGR00769	472	AAA ADP/ATP carrier protein family. These proteins	97.91
TIGR00805	633	oat sodium-independent organic anion transporter.	97.81
PF06963	432	FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi	97.77
TIGR01272	310	gluP glucose/galactose transporter. Disruption of	97.73
KOG3098	461	consensus Uncharacterized conserved protein [Funct	97.63
KOG4332	454	consensus Predicted sugar transporter [Carbohydrat	97.55
TIGR00939	437	2a57 Equilibrative Nucleoside Transporter (ENT).	97.34
KOG3097	390	consensus Predicted membrane protein [Function unk	97.27
COG2270	438	Permeases of the major facilitator superfamily [Ge	97.26
KOG3762	618	consensus Predicted transporter [General function	97.25
KOG1330	493	consensus Sugar transporter/spinster transmembrane	97.25
PRK03612	521	spermidine synthase; Provisional	97.11
KOG1237	571	consensus H+/oligopeptide symporter [Amino acid tr	97.04
COG3104	498	PTR2 Dipeptide/tripeptide permease [Amino acid tra	97.02
PF00854	372	PTR2: POT family; InterPro: IPR000109 This entry r	96.92
KOG2563	480	consensus Permease of the major facilitator superf	96.56
PF03092	433	BT1: BT1 family; InterPro: IPR004324 Members of th	96.41
PF03137	539	OATP: Organic Anion Transporter Polypeptide (OATP)	96.28
KOG3574	510	consensus Acetyl-CoA transporter [Inorganic ion tr	96.26
KOG3098	461	consensus Uncharacterized conserved protein [Funct	96.24
PF01770	412	Folate_carrier: Reduced folate carrier; InterPro:	95.68
KOG2325	488	consensus Predicted transporter/transmembrane prot	95.28
PF02487	402	CLN3: CLN3 protein; InterPro: IPR003492 Batten's d	95.02
COG3202	509	ATP/ADP translocase [Energy production and convers	94.25
TIGR00806	511	rfc RFC reduced folate carrier. Proteins of the RF	94.1
KOG1479	406	consensus Nucleoside transporter [Nucleotide trans	93.9
PF01733	309	Nucleoside_tran: Nucleoside transporter; InterPro:	93.8
PF03219	491	TLC: TLC ATP/ADP transporter; InterPro: IPR004667	93.65
KOG3880	409	consensus Predicted small molecule transporter inv	91.95
KOG3626	735	consensus Organic anion transporter [Secondary met	91.35
KOG0637	498	consensus Sucrose transporter and related proteins	91.08
KOG3810	433	consensus Micronutrient transporters (folate trans	89.93
KOG3810	433	consensus Micronutrient transporters (folate trans	89.48
PF06963	432	FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi	87.68
PF13000	544	Acatn: Acetyl-coenzyme A transporter 1; InterPro:	85.53
TIGR00880	141	2_A_01_02 Multidrug resistance protein.	84.45
KOG3574	510	consensus Acetyl-CoA transporter [Inorganic ion tr	84.33
PF13000	544	Acatn: Acetyl-coenzyme A transporter 1; InterPro:	80.47

>TIGR02332 HpaX 4-hydroxyphenylacetate permease

Probab=99.91  E-value=2.6e-23  Score=159.77  Aligned_cols=153  Identities=20%  Similarity=0.213  Sum_probs=143.9

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhcccCCCchhHHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHH
Q 030356           22 KFQILVLIYAGLGLVAEAMEIMILSFIGPAIKSEWNLSPAQETLLTSVVFAGLLVGSYSWGFISDNYGRRKGLLGIAMLA  101 (179)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~d~~G~r~~~~~~~~~~  101 (179)
                      +.+|.....+++.+.+++++....++..|.+.+|+|.+.++.+++.+.+.++..+++++.|+++||+|||+++..+.++.
T Consensus         4 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~   83 (412)
T TIGR02332         4 KLFRRLIIFLFILFIFSFLDRINIGFAGLTMGKDLGLSATMFGLAATLFYAAYVICGIPSNIMLAIIGARRWIAGIMVLW   83 (412)
T ss_pred             eehhHHHHHHHHHHHHHHhhhhhHHHHHHhhHhhcCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhChHHHHHHHHHHH
Confidence            34567778888888999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhcCch-hhHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 030356          102 SVAGLLSAFSLNYLSLVTLRGLVGIGLGSG-PVCLSWFLEFIPASNRGMWMVVISIFWTLGTIFEAALAWGNIL  174 (179)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~~~  174 (179)
                      .++.+++++++|+..+++.|++.|++.+.. +....++.|++|+++|++++++++....+|..++|.+++++.+
T Consensus        84 ~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~  157 (412)
T TIGR02332        84 GIASTATMFATGPESLYLLRILVGIAEAGFLPGILLYLTFWFPAYFRARANALFMIAMPVTMALGLILSGYILA  157 (412)
T ss_pred             HHHHHHHHHhcCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            999999999999999999999999999998 8888899999999999999999999999999999999998874

This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.

>TIGR01299 synapt_SV2 synaptic vesicle protein SV2

Probab=99.90  E-value=1.4e-22  Score=164.00  Aligned_cols=160  Identities=29%  Similarity=0.651  Sum_probs=148.0

Q ss_pred             hhcCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhcccCCCchhHHHHHHHHHHHHHHHHHHHhhhhccccchhHHH
Q 030356           16 NHVGFGKFQILVLIYAGLGLVAEAMEIMILSFIGPAIKSEWNLSPAQETLLTSVVFAGLLVGSYSWGFISDNYGRRKGLL   95 (179)
Q Consensus        16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~d~~G~r~~~~   95 (179)
                      ++.+..+.+|.+++.+.++.+..+++....+...|.+.++++++..+.+++.+++.++.+++++++|+++||+|||++++
T Consensus       157 ~~~~~~~~~~~l~~i~~l~~~~~g~d~~~is~ilp~i~~~~gls~~~~g~l~s~~~lG~iiG~li~G~LsDR~GRR~~li  236 (742)
T TIGR01299       157 QECGHGRFQWALFFVLGLALMADGVEVFVVGFVLPSAEKDLCIPDSGKGMLGLIVYLGMMVGAFFWGGLADKLGRKQCLL  236 (742)
T ss_pred             HHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHH
Confidence            44556778888888888888889998998999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCch-hhHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 030356           96 GIAMLASVAGLLSAFSLNYLSLVTLRGLVGIGLGSG-PVCLSWFLEFIPASNRGMWMVVISIFWTLGTIFEAALAWGNIL  174 (179)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~~~  174 (179)
                      ++.++.+++.++++++++++.+++.|++.|++.++. +....++.|++|+++|++.+++++..+.+|.++++.++..+..
T Consensus       237 i~lil~~i~~ll~afa~s~~~llv~R~l~G~g~g~~~p~~~~~isE~~p~~~Rg~~~g~~~~~~~iG~ila~~la~~il~  316 (742)
T TIGR01299       237 ICLSVNGFFAFFSSFVQGYGFFLFCRLLSGFGIGGAIPIVFSYFAEFLAQEKRGEHLSWLCMFWMIGGIYAAAMAWAIIP  316 (742)
T ss_pred             HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999998 9999999999999999999999999999999999998887765


Q ss_pred             c
Q 030356          175 L  175 (179)
Q Consensus       175 ~  175 (179)
                      .
T Consensus       317 ~  317 (742)
T TIGR01299       317 H  317 (742)
T ss_pred             h
Confidence            3

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.

>PRK09556 uhpT sugar phosphate antiporter; Reviewed

Probab=99.89  E-value=4.6e-23  Score=160.73  Aligned_cols=157  Identities=17%  Similarity=0.126  Sum_probs=140.3

Q ss_pred             CCchHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhcccCCCchhHHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHH
Q 030356           19 GFGKFQILVLIYAGLGLVAEAMEIMILSFIGPAIKSEWNLSPAQETLLTSVVFAGLLVGSYSWGFISDNYGRRKGLLGIA   98 (179)
Q Consensus        19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~d~~G~r~~~~~~~   98 (179)
                      ...+..+..+..+++.+...+.++...+...|.+.+|+|++.++.+++.+.+.+++.+++++.|+++||+|||+++..+.
T Consensus        22 ~~~~~~~~i~~~~~~~~~~~y~~r~~~~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~  101 (467)
T PRK09556         22 MWFKPFMQSYLVVFIGYLTMYLIRKNFKAAQNDMISTYGLSTTELGMIGLGFSITYGVGKTLVGYYADGKNTKQFLPFLL  101 (467)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcChhhhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhhHhhccCccchHHHHH
Confidence            34455667777888888888889999999999999999999999999999999999999999999999999999999888


Q ss_pred             HHHHHHHHHHHH-----HHHHHHHHHHHHHHHhhcCch-hhHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 030356           99 MLASVAGLLSAF-----SLNYLSLVTLRGLVGIGLGSG-PVCLSWFLEFIPASNRGMWMVVISIFWTLGTIFEAALAWGN  172 (179)
Q Consensus        99 ~~~~~~~~~~~~-----~~~~~~~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~  172 (179)
                      ++.++..+..+.     ++++..+++.|++.|++++.. +....++.|++|+++|++++++++.+..+|..+++.+..++
T Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~rg~a~gi~~~~~~lG~~l~~~i~~~~  181 (467)
T PRK09556        102 ILSAICMLGFGASLGSGSVSLGLMIALWALSGFFQSTGGPCSYSTITRWTPRRKRGRFLGFWNISHNLGGAGAGGVALWG  181 (467)
T ss_pred             HHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHhccchHHHHHHHHHcCccceeeeEEeeecccchhhhHHHHHHHHH
Confidence            888777766554     578999999999999999988 88889999999999999999999999999999999888776


Q ss_pred             hcc
Q 030356          173 ILL  175 (179)
Q Consensus       173 ~~~  175 (179)
                      .+.
T Consensus       182 ~~~  184 (467)
T PRK09556        182 ANY  184 (467)
T ss_pred             HHh
Confidence            653

>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]

Probab=99.89  E-value=4.1e-22  Score=149.38  Aligned_cols=156  Identities=22%  Similarity=0.259  Sum_probs=148.5

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhcccCCCchhHHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHH
Q 030356           22 KFQILVLIYAGLGLVAEAMEIMILSFIGPAIKSEWNLSPAQETLLTSVVFAGLLVGSYSWGFISDNYGRRKGLLGIAMLA  101 (179)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~d~~G~r~~~~~~~~~~  101 (179)
                      +..+..++.+.++.+..+...+.....+|.+.+|+|.|+.++|+..+.+.++..+++|+...++||+.||++++..+.++
T Consensus         9 ~~~~~~l~aLa~~~F~igttEfv~~gLLp~iA~dl~vs~~~aG~lis~yAl~~ai~ap~l~~lt~r~~Rr~lLl~~l~lF   88 (394)
T COG2814           9 KPMWLALLALALAAFAIGTTEFVPVGLLPPIAADLGVSEGAAGQLITAYALGVALGAPLLALLTGRLERRRLLLGLLALF   88 (394)
T ss_pred             ccchHHHHHHHHHHHHHHhHHHHHHhchHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHHH
Confidence            34456677788888999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhcCch-hhHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Q 030356          102 SVAGLLSAFSLNYLSLVTLRGLVGIGLGSG-PVCLSWFLEFIPASNRGMWMVVISIFWTLGTIFEAALAWGNILLNS  177 (179)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~~~~~~  177 (179)
                      +++.+++++++||..+++.|++.|+..|.. +...+...+..|+++|++++++...+..++.++|.+++.++-+..|
T Consensus        89 i~~n~l~alAp~f~~Ll~aR~~~g~a~G~f~~i~~~~a~~lvpp~~~~~Aiaiv~~G~tlA~v~GvPLGt~ig~~~G  165 (394)
T COG2814          89 IVSNLLSALAPSFAVLLLARALAGLAHGVFWSIAAALAARLVPPGKRGRALALVFTGLTLATVLGVPLGTFLGQLFG  165 (394)
T ss_pred             HHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccchhhHHHHHHHHHHHHHHHhccHHHHHHHHhh
Confidence            999999999999999999999999999999 9999999999999999999999999999999999999999998875

>TIGR00891 2A0112 putative sialic acid transporter

Probab=99.89  E-value=7.3e-22  Score=150.60  Aligned_cols=157  Identities=20%  Similarity=0.325  Sum_probs=146.4

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhcccCCCchhHHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHH
Q 030356           21 GKFQILVLIYAGLGLVAEAMEIMILSFIGPAIKSEWNLSPAQETLLTSVVFAGLLVGSYSWGFISDNYGRRKGLLGIAML  100 (179)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~d~~G~r~~~~~~~~~  100 (179)
                      ++++|+....+.+..+...++........|.+.+++|.|+++.+++.+...++..+++++.|+++||+|||+++..+.++
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~~   86 (405)
T TIGR00891         7 TRAQWNAFSAAWLGWLLDAFDFFLVALVLAEVAGEFGLTTVDAASLISAALISRWFGALMFGLWGDRYGRRLPMVTSIVL   86 (405)
T ss_pred             CcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence            45667778888889999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhcCch-hhHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Q 030356          101 ASVAGLLSAFSLNYLSLVTLRGLVGIGLGSG-PVCLSWFLEFIPASNRGMWMVVISIFWTLGTIFEAALAWGNILLNS  177 (179)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~~~~~~  177 (179)
                      .+++.+.+.+++++..+++.|++.|++.+.. +...+++.|++|+++|+++.++.+....+|..+++.+++.+.+..+
T Consensus        87 ~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~  164 (405)
T TIGR00891        87 FSAGTLACGFAPGYITMFIARLVIGIGMGGEYGSSAAYVIESWPKHLRNKASGLLISGYAVGAVVAAQVYSLVVPVWG  164 (405)
T ss_pred             HHHHHHHHHHhccHHHHHHHHHHHHhhhhhhhHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            9999999999999999999999999999988 8889999999999999999999999999999999999998876543

>PRK11663 regulatory protein UhpC; Provisional

Probab=99.89  E-value=2.6e-21  Score=149.61  Aligned_cols=156  Identities=19%  Similarity=0.220  Sum_probs=141.4

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhcccCCCchhHHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHH
Q 030356           22 KFQILVLIYAGLGLVAEAMEIMILSFIGPAIKSEWNLSPAQETLLTSVVFAGLLVGSYSWGFISDNYGRRKGLLGIAMLA  101 (179)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~d~~G~r~~~~~~~~~~  101 (179)
                      ..++.......+..+....+........|.+.+++|.|+++.+++.+.+.++..+++++.|++.||+|||+++.++.++.
T Consensus        19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~~~~~~~~~   98 (434)
T PRK11663         19 YWRRHILITMYLGYALFYFTRKSFNAAMPEMLADLGLSRSDIGLLATLFYITYGVSKFVSGIVSDRSNARYFMGIGLIAT   98 (434)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhhHHHhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhHHHhhcCCchhHHHHHHHH
Confidence            34555666666777777777777888889999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhcCch-hhHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Q 030356          102 SVAGLLSAFSLNYLSLVTLRGLVGIGLGSG-PVCLSWFLEFIPASNRGMWMVVISIFWTLGTIFEAALAWGNILLNS  177 (179)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~~~~~~  177 (179)
                      +++.+++.++++++.+++.|++.|++.|.. +....++.|++|+++|++++++++....+|..++|.+.+++.+..+
T Consensus        99 ~~~~~~~~~~~~~~~l~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~g  175 (434)
T PRK11663         99 GIINILFGFSSSLWAFALLWVLNAFFQGWGWPVCAKLLTAWYSRTERGGWWAIWNTAHNVGGALIPLVVGAIALHYG  175 (434)
T ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHHHHHccchHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc
Confidence            999999999999999999999999999887 8888999999999999999999999999999999999999887654

>PRK03545 putative arabinose transporter; Provisional

Probab=99.88  E-value=1.5e-21  Score=149.02  Aligned_cols=153  Identities=16%  Similarity=0.128  Sum_probs=133.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhcchhcccCCCchhHHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHH
Q 030356           25 ILVLIYAGLGLVAEAMEIMILSFIGPAIKSEWNLSPAQETLLTSVVFAGLLVGSYSWGFISDNYGRRKGLLGIAMLASVA  104 (179)
Q Consensus        25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~d~~G~r~~~~~~~~~~~~~  104 (179)
                      |.....+.++.+.............|.+.+|+|.|+++.+++.+.+.++..+++++.|++.||+|||+++..+.++.+++
T Consensus         8 ~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~   87 (390)
T PRK03545          8 WLRVVTLALAAFIFNTTEFVPVGLLSDIAQSFHMQTAQVGLMLTIYAWVVALMSLPLMLLTSNVERRKLLIGLFVLFIAS   87 (390)
T ss_pred             hHHHHHHHHHHHHHHhHHHHHHcchHHHHhHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHH
Confidence            33334444443444344445556678999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhcCch-hhHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Q 030356          105 GLLSAFSLNYLSLVTLRGLVGIGLGSG-PVCLSWFLEFIPASNRGMWMVVISIFWTLGTIFEAALAWGNILLNS  177 (179)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~~~~~~  177 (179)
                      .+.+.+++|++.+++.|++.|++.+.. +...+++.|++|+|+|+++++++..+..+|..++|++++.+.+..+
T Consensus        88 ~~~~~~~~~~~~l~~~r~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~g~~~~~~~~g~~ig~~l~~~l~~~~g  161 (390)
T PRK03545         88 HVLSALAWNFTVLLISRIGIAFAHAIFWSITASLAIRVAPAGKKAQALSLLATGTALAMVLGLPLGRVIGQYLG  161 (390)
T ss_pred             HHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhhhHHHHHHHHHHHHHHHHhhHHHHHHHHhc
Confidence            999999999999999999999999887 8888999999999999999999999999999999999999887654

>PRK10213 nepI ribonucleoside transporter; Reviewed

Probab=99.88  E-value=2.5e-21  Score=148.08  Aligned_cols=154  Identities=14%  Similarity=0.087  Sum_probs=136.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhcchhcccCCCchhHHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHH
Q 030356           24 QILVLIYAGLGLVAEAMEIMILSFIGPAIKSEWNLSPAQETLLTSVVFAGLLVGSYSWGFISDNYGRRKGLLGIAMLASV  103 (179)
Q Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~d~~G~r~~~~~~~~~~~~  103 (179)
                      .|+....+..+.+......+......|.+.+++|.++++.++..+...++..+++++.|++.||+|||+++..+.++.++
T Consensus        18 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~grr~~~~~~~~~~~~   97 (394)
T PRK10213         18 NWSAVFSVAFCVACLIIVEFLPVSLLTPMAQDLGISEGVAGQSVTVTAFVAMFASLFITQTIQATDRRYVVILFAVLLTL   97 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHHH
Confidence            44444444444444555555556667889999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhcCch-hhHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Q 030356          104 AGLLSAFSLNYLSLVTLRGLVGIGLGSG-PVCLSWFLEFIPASNRGMWMVVISIFWTLGTIFEAALAWGNILLNS  177 (179)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~~~~~~  177 (179)
                      +.+.+.++++++.+++.|++.|++.+.. +...+++.|++|+|+|+++.++.....++|..++|.+++++.+..+
T Consensus        98 ~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~~~l~~~~g  172 (394)
T PRK10213         98 SCLLVSFANSFSLLLIGRACLGLALGGFWAMSASLTMRLVPPRTVPKALSVIFGAVSIALVIAAPLGSFLGELIG  172 (394)
T ss_pred             HHHHHHHHChHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence            9999999999999999999999999998 8889999999999999999999999999999999999999987654

>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]

Probab=99.88  E-value=4e-22  Score=148.62  Aligned_cols=157  Identities=20%  Similarity=0.251  Sum_probs=149.8

Q ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhcccCCCchhHHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHH
Q 030356           20 FGKFQILVLIYAGLGLVAEAMEIMILSFIGPAIKSEWNLSPAQETLLTSVVFAGLLVGSYSWGFISDNYGRRKGLLGIAM   99 (179)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~d~~G~r~~~~~~~~   99 (179)
                      .++.++.+++.+++++...+..+-.+....|.+.++.++|.+|.|.+.+.+.+.+.++..+.|.++||.+.|+.+..+++
T Consensus        23 y~~~r~qif~~~fiGYa~fYl~RknF~~a~p~l~e~~~lsk~~lG~i~s~f~i~YG~sKf~~G~~sDr~npr~fm~~gLi  102 (448)
T COG2271          23 YKRWRIQIFLSIFIGYAAFYLTRKNFNLAMPALIEDGGLSKTQLGILGSAFSITYGVSKFVMGVLSDRSNPRYFMAFGLI  102 (448)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhHhhccHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCceeehHHHH
Confidence            45678889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCch-hhHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHH--HHHhccC
Q 030356          100 LASVAGLLSAFSLNYLSLVTLRGLVGIGLGSG-PVCLSWFLEFIPASNRGMWMVVISIFWTLGTIFEAALA--WGNILLN  176 (179)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~--~~~~~~~  176 (179)
                      +.++..+++.++++...+.+..++.|..+|.. |++...+.+|+|+++||+..++++++.++|+.+.|++.  +++.++.
T Consensus       103 lsai~nil~Gfs~s~~~~~~l~~lng~fQg~Gwpp~~~~i~~Wfsr~eRG~~~siWn~shNiGGal~~~~~~la~~~~~~  182 (448)
T COG2271         103 LSAIVNILFGFSPSLFLFAVLWVLNGWFQGMGWPPCARTITHWFSRKERGTWWSIWNTSHNIGGALAPLVALLAFFAFHG  182 (448)
T ss_pred             HHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHcCccccCceEEEehhhhhcccchHHHHHHHHHHHhcc
Confidence            99999999999999999999999999999999 99999999999999999999999999999999999999  7777654

>PRK12307 putative sialic acid transporter; Provisional

Probab=99.88  E-value=4.1e-21  Score=147.94  Aligned_cols=156  Identities=21%  Similarity=0.286  Sum_probs=143.7

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhcccCCCchhHHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHH
Q 030356           22 KFQILVLIYAGLGLVAEAMEIMILSFIGPAIKSEWNLSPAQETLLTSVVFAGLLVGSYSWGFISDNYGRRKGLLGIAMLA  101 (179)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~d~~G~r~~~~~~~~~~  101 (179)
                      +.+++....+.+..+...++.....+..|.+.+++|.|+.+.++..+.+.++..+++++.|+++||+|||+++..+.+..
T Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~l~~~~~g~l~dr~g~r~~l~~~~~~~   93 (426)
T PRK12307         14 RPQKNALFSAWLGYVFDGFDFMLIFYIMYLIKADLGLTDMEGAFLATAAFIGRPFGGALFGLLADKFGRKPLMMWSIVAY   93 (426)
T ss_pred             HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHH
Confidence            45556677778888888999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhcCch-hhHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Q 030356          102 SVAGLLSAFSLNYLSLVTLRGLVGIGLGSG-PVCLSWFLEFIPASNRGMWMVVISIFWTLGTIFEAALAWGNILLNS  177 (179)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~~~~~~  177 (179)
                      +++.+...++++++.+++.|++.|++.+.. +....++.|++|+|+|+++.++++.+..+|..+++.+...+.+..+
T Consensus        94 ~~~~~~~~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~l~~~l~~~~~  170 (426)
T PRK12307         94 SVGTGLSGLASGVIMLTLSRFIVGMGMAGEYACASTYAVESWPKHLKSKASAFLVSGFGIGNIIAAYFMPSFAEAYG  170 (426)
T ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhCCHhHhhHhhhHHHHHHhHHHHHHHHHHHHHcccCC
Confidence            999999999999999999999999999988 8889999999999999999999999999999999999888776543

>PRK14995 methyl viologen resistance protein SmvA; Provisional

Probab=99.88  E-value=2.2e-21  Score=152.33  Aligned_cols=154  Identities=19%  Similarity=0.152  Sum_probs=143.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhcchhcccCCCchhHHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHH
Q 030356           24 QILVLIYAGLGLVAEAMEIMILSFIGPAIKSEWNLSPAQETLLTSVVFAGLLVGSYSWGFISDNYGRRKGLLGIAMLASV  103 (179)
Q Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~d~~G~r~~~~~~~~~~~~  103 (179)
                      +|..+..++++.+....+..+.+...|.+.+|+|.++++.+|+.+.+.++..++.++.|+++||+|||++++.+.++..+
T Consensus         4 ~~~~~~~~~~~~~~~~ld~tiv~~a~p~i~~~l~~s~~~~~~~~~~~~l~~~~~~~~~G~l~D~~Grk~~l~~~~~~~~~   83 (495)
T PRK14995          4 QWLTLVIIVLVYIPVAIDATVLHVAAPTLSMTLGASGNELLWIIDIYSLVMAGMVLPMGALGDRIGFKRLLMLGGTLFGL   83 (495)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence            45677888889999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhcCch-hhHHHHHHHhc-cccchhHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Q 030356          104 AGLLSAFSLNYLSLVTLRGLVGIGLGSG-PVCLSWFLEFI-PASNRGMWMVVISIFWTLGTIFEAALAWGNILLNS  177 (179)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~l~G~~~g~~-~~~~~~~~~~~-~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~~~~~~  177 (179)
                      +.+.+++++|++.+++.|+++|++.+.. +.....+.+.+ |+++|+++++++.....+|..++|.+++++.+..+
T Consensus        84 ~~~~~~~a~~~~~li~~r~l~G~g~~~~~~~~~~~l~~~~~~~~~r~~~~g~~~~~~~~g~~~gp~lgg~l~~~~g  159 (495)
T PRK14995         84 ASLAAAFSPTASWLIATRALLAIGAAMIVPATLAGIRATFTEEKQRNMALGVWAAVGSGGAAFGPLVGGILLEHFY  159 (495)
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC
Confidence            9999999999999999999999999887 77777777776 67999999999999999999999999999998765

>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

Probab=99.87  E-value=9.5e-21  Score=145.08  Aligned_cols=156  Identities=22%  Similarity=0.232  Sum_probs=143.3

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhcccCCCchhHHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHH
Q 030356           21 GKFQILVLIYAGLGLVAEAMEIMILSFIGPAIKSEWNLSPAQETLLTSVVFAGLLVGSYSWGFISDNYGRRKGLLGIAML  100 (179)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~d~~G~r~~~~~~~~~  100 (179)
                      .+++|......++..+.++++........|.+.+++|.++++.+++.+...++..+++++.|+++||+|||+++..+.++
T Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~   89 (406)
T PRK11551         10 SSRLALTIGLCFLVALLEGLDLQSAGVAAPRMAQEFGLDVAQMGWAFSAGILGLLPGALLGGRLADRIGRKRILIVSVAL   89 (406)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHH
Confidence            34667777888888889999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhcCch-hhHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHHHhccC
Q 030356          101 ASVAGLLSAFSLNYLSLVTLRGLVGIGLGSG-PVCLSWFLEFIPASNRGMWMVVISIFWTLGTIFEAALAWGNILLN  176 (179)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~~~~~  176 (179)
                      ..+..+.+.+++++..+++.|++.|++.+.. +...+++.|++|+|+|++++++++....+|..++|.++..+.+..
T Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~  166 (406)
T PRK11551         90 FGLFSLATAQAWDFPSLLVARLLTGVGLGGALPNLIALTSEAVGPRLRGTAVSLMYCGVPFGGALASVIGVLAAGDA  166 (406)
T ss_pred             HHHHHHHHHHhccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccc
Confidence            8888888888999999999999999999888 888999999999999999999999999999999999987776543

>PRK03699 putative transporter; Provisional

Probab=99.87  E-value=1.1e-20  Score=144.45  Aligned_cols=154  Identities=12%  Similarity=0.096  Sum_probs=139.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhcchhcccCCCchhHHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHH
Q 030356           23 FQILVLIYAGLGLVAEAMEIMILSFIGPAIKSEWNLSPAQETLLTSVVFAGLLVGSYSWGFISDNYGRRKGLLGIAMLAS  102 (179)
Q Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~d~~G~r~~~~~~~~~~~  102 (179)
                      ++++....+++.++..+......+...|.+.+++|.|+++.+++.+...++..+++++.|++.||+|||+++..+.++.+
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~g~r~~~~~~~~~~~   83 (394)
T PRK03699          4 NRIKLTWISFLSYALTGALVIVTGMVMGPIAEYFNLPVSSMSNTFTFLNAGILISIFLNAWLMEIIPLKRQLIFGFALMI   83 (394)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence            44566667777788888888888999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhcCch-hhHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHHHhccC
Q 030356          103 VAGLLSAFSLNYLSLVTLRGLVGIGLGSG-PVCLSWFLEFIPASNRGMWMVVISIFWTLGTIFEAALAWGNILLN  176 (179)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~~~~~  176 (179)
                      ++.++..++++++.+++.|++.|++.+.. +....++.|++|+++|+++++..+....+|+.++|.+.+++.+..
T Consensus        84 i~~~l~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~  158 (394)
T PRK03699         84 LAVAGLMFSHSLALFSIAMFVLGVVSGITMSIGTFLITHVYEGKQRGSRLLFTDSFFSMAGMIFPIIAAYLLARS  158 (394)
T ss_pred             HHHHHHHHcchHHHHHHHHHHHHHhhHhhccchhHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            99999999999999999999999999887 788899999999999999999999999999999999988877543

>TIGR00895 2A0115 benzoate transport

Probab=99.87  E-value=2e-20  Score=142.14  Aligned_cols=158  Identities=29%  Similarity=0.418  Sum_probs=142.0

Q ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhcccCCCchhHHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHH
Q 030356           20 FGKFQILVLIYAGLGLVAEAMEIMILSFIGPAIKSEWNLSPAQETLLTSVVFAGLLVGSYSWGFISDNYGRRKGLLGIAM   99 (179)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~d~~G~r~~~~~~~~   99 (179)
                      .++++++......+..+...++.....+..|.+.+++|.++.+.+++.+...++..++.++.|+++||+|||+.+..+.+
T Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~   90 (398)
T TIGR00895        11 LSRYQWRAIILSFLIMLMDGYDLAAMGFAAPAISAEWGLDPVQLGFLFSAGLIGMAFGALFFGPLADRIGRKRVLLWSIL   90 (398)
T ss_pred             CcchHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhHHHHHHHHH
Confidence            34455666666666777777778888888899999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCch-hhHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Q 030356          100 LASVAGLLSAFSLNYLSLVTLRGLVGIGLGSG-PVCLSWFLEFIPASNRGMWMVVISIFWTLGTIFEAALAWGNILLNS  177 (179)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~~~~~~  177 (179)
                      +..++.++..+.+++..+++.+++.|++.+.. +...+++.|++|+++|++++++.+....+|..++|.+++++.+..+
T Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g  169 (398)
T TIGR00895        91 LFSVFTLLCALATNVTQLLILRFLAGLGLGGLMPNLNALVSEYAPKRFRGTAVGLMFCGYPIGAAVGGFLAGWLIPVFG  169 (398)
T ss_pred             HHHHHHHHHHHccchHHHHHHHHHHhcccccchhhHHHHHHHHcCHHhhchhHhhHhhHHHHHHHHHHHHHHHHhhccc
Confidence            99998888888899999999999999999988 8899999999999999999999999999999999999999887544

>PRK03893 putative sialic acid transporter; Provisional

Probab=99.87  E-value=2.4e-20  Score=146.29  Aligned_cols=156  Identities=21%  Similarity=0.321  Sum_probs=144.5

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhcccCCCchhHHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHH
Q 030356           22 KFQILVLIYAGLGLVAEAMEIMILSFIGPAIKSEWNLSPAQETLLTSVVFAGLLVGSYSWGFISDNYGRRKGLLGIAMLA  101 (179)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~d~~G~r~~~~~~~~~~  101 (179)
                      +.+++.+..+++..+...++........|.+.+++|.|+.+.+++.+.+.++..+++++.|+++||+|||+.+..+.++.
T Consensus        16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~   95 (496)
T PRK03893         16 RAQWKAFSAAWLGYLLDGFDFVLITLVLTEVQGEFGLTTVQAASLISAAFISRWFGGLLLGAMGDRYGRRLAMVISIVLF   95 (496)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHH
Confidence            45667777888888889999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhcCch-hhHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Q 030356          102 SVAGLLSAFSLNYLSLVTLRGLVGIGLGSG-PVCLSWFLEFIPASNRGMWMVVISIFWTLGTIFEAALAWGNILLNS  177 (179)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~~~~~~  177 (179)
                      +++.+.+.++++++.+++.|++.|++.+.. +....++.|.+|+++|+++++++.....+|..++|.+++.+.+..+
T Consensus        96 ~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~  172 (496)
T PRK03893         96 SVGTLACGFAPGYWTLFIARLVIGMGMAGEYGSSATYVIESWPKHLRNKASGFLISGFSIGAVVAAQVYSLVVPVWG  172 (496)
T ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Confidence            999999999999999999999999999887 8888999999999999999999999999999999999998887543

>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism]

Probab=99.86  E-value=2.3e-22  Score=151.27  Aligned_cols=158  Identities=20%  Similarity=0.256  Sum_probs=149.6

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhcccCCCchhHHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHH
Q 030356           22 KFQILVLIYAGLGLVAEAMEIMILSFIGPAIKSEWNLSPAQETLLTSVVFAGLLVGSYSWGFISDNYGRRKGLLGIAMLA  101 (179)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~d~~G~r~~~~~~~~~~  101 (179)
                      +..++...++++...++..+.+.+....+...+.+|+++++.|++.+.+.+...+++|+.|+++||+.||+++.+|..++
T Consensus        29 ~~~~~~l~il~~vnlmny~Dr~~iagv~~~v~~~fni~~s~~Gll~~vf~v~~~i~sPl~gyLadryNR~~v~~vG~~iW  108 (493)
T KOG1330|consen   29 KSPTLTLVILCLVNLMNYADRYTIAGVLKEVQTYFNISDSELGLLQTVFIVVFMIASPLFGYLADRYNRKRVIAVGIFIW  108 (493)
T ss_pred             ccchHHHHHHHHHHHHHHhhhhhhhhhhHHHHHhcCCCchhccchhHHHHHHHHHHHHHHHHHHhhcCcceEEeeHHHHH
Confidence            34456677888888999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhcCch-hhHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHHHhccCCCC
Q 030356          102 SVAGLLSAFSLNYLSLVTLRGLVGIGLGSG-PVCLSWFLEFIPASNRGMWMVVISIFWTLGTIFEAALAWGNILLNSKN  179 (179)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~~~~~~~~  179 (179)
                      .++.+..++++.++++.++|.+.|+|.+.. +..+++++|.+|.++|++.+++++.+..+|.++|.+++..+.++.+.|
T Consensus       109 ~~Av~~~~fs~~Fwq~~l~R~~vGiGeAs~~~ia~s~IaD~f~~~~Rs~~~~ify~~ipvGsglG~vvgs~va~~~~~W  187 (493)
T KOG1330|consen  109 TLAVFASGFSNHFWQVLLCRGFVGIGEASYSPIAPSLIADSFPDDKRSRVLGIFYFAIPVGSGLGYVVGSVVASLTFWW  187 (493)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhccchhhhcccchhHhhhcCcchhhhHHHHHhhhhcccccceeEEeeeeeccCccce
Confidence            999999999999999999999999999999 999999999999999999999999999999999999999998887755

>PRK10133 L-fucose transporter; Provisional

Probab=99.86  E-value=1.8e-20  Score=145.03  Aligned_cols=152  Identities=16%  Similarity=0.204  Sum_probs=135.6

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhcccCCCchhHHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHH
Q 030356           22 KFQILVLIYAGLGLVAEAMEIMILSFIGPAIKSEWNLSPAQETLLTSVVFAGLLVGSYSWGFISDNYGRRKGLLGIAMLA  101 (179)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~d~~G~r~~~~~~~~~~  101 (179)
                      +.....+..+.+.++.............|.+++++|.|+.+.++..+.+.+++.+++++.|++.||+|||+++..+..+.
T Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~~~~s~~~~gl~~~~~~~g~~i~~~~~g~l~dr~G~r~~l~~g~~~~  101 (438)
T PRK10133         22 RSYIIPFALLCSLFFLWAVANNLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLY  101 (438)
T ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHH
Confidence            44455566667777888888888999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHH---HHHHHHHHHHHHHHHHHhhcCch-hhHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 030356          102 SVAGLLS---AFSLNYLSLVTLRGLVGIGLGSG-PVCLSWFLEFIPASNRGMWMVVISIFWTLGTIFEAALAWGNI  173 (179)
Q Consensus       102 ~~~~~~~---~~~~~~~~~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~~  173 (179)
                      +++.+++   ..++++..+++.|++.|++.+.. +..+.++.|..|+++|...+++.+..+.+|..++|.++..+.
T Consensus       102 ~~~~~l~~~~~~a~~~~~ll~~r~l~G~g~g~~~~~~~~~v~~~~~~~~~~~~~s~~~~~~~~G~~~g~~~g~~l~  177 (438)
T PRK10133        102 ALGAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLI  177 (438)
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9998775   45789999999999999999998 888899999877777777899999999999999999988765

>PRK10406 alpha-ketoglutarate transporter; Provisional

Probab=99.86  E-value=2.2e-20  Score=144.42  Aligned_cols=152  Identities=17%  Similarity=0.216  Sum_probs=126.0

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhcccC---CCchhHHH---HHHHHHHHHHHHHHHHhhhhccccchhHHH
Q 030356           22 KFQILVLIYAGLGLVAEAMEIMILSFIGPAIKSEWN---LSPAQETL---LTSVVFAGLLVGSYSWGFISDNYGRRKGLL   95 (179)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~s~~~~~~---~~~~~~~~~~i~~~~~g~l~d~~G~r~~~~   95 (179)
                      +++++.+....++.+.+.++...++...|.+.+|++   .+..+.+.   +.+...++..+++++.|+++||+|||+++.
T Consensus        18 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~G~l~Dr~Grr~~l~   97 (432)
T PRK10406         18 RRRIWAIVGASSGNLVEWFDFYVYSFCSLYFAHIFFPSGNTTTQLLQTAGVFAAGFLMRPIGGWLFGRIADKHGRKKSML   97 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence            344556667777888999999999999999999974   44554433   444555555599999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHhhcCch-hhHHHHHHHhccccchhHHHHHHHHHHHHHHHHHH
Q 030356           96 GIAMLASVAGLLSAFSLNYL--------SLVTLRGLVGIGLGSG-PVCLSWFLEFIPASNRGMWMVVISIFWTLGTIFEA  166 (179)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~~~--------~~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~  166 (179)
                      .+.++++++.+.+++++++.        .+++.|+++|++.|.. +...+++.|++|+++|+++.++.+.....|..+++
T Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~rg~~~~~~~~~~~~G~~~~~  177 (432)
T PRK10406         98 ISVCMMCFGSLVIACLPGYETIGTWAPALLLLARLFQGLSVGGEYGTSATYMSEVAVEGRKGFYASFQYVTLIGGQLLAL  177 (432)
T ss_pred             HHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHhCCCCcccHHHHHHHHHHHHHHHHHH
Confidence            99999999999998877653        5788999999999998 88999999999999999999998888888888887


Q ss_pred             HHHHHHh
Q 030356          167 ALAWGNI  173 (179)
Q Consensus       167 ~i~~~~~  173 (179)
                      .+...+.
T Consensus       178 ~~~~~~~  184 (432)
T PRK10406        178 LVVVVLQ  184 (432)
T ss_pred             HHHHHHH
Confidence            7655543

>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily

Probab=99.86  E-value=1.6e-20  Score=146.74  Aligned_cols=151  Identities=19%  Similarity=0.236  Sum_probs=140.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhcchhcccCCCchhHHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHH
Q 030356           27 VLIYAGLGLVAEAMEIMILSFIGPAIKSEWNLSPAQETLLTSVVFAGLLVGSYSWGFISDNYGRRKGLLGIAMLASVAGL  106 (179)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~d~~G~r~~~~~~~~~~~~~~~  106 (179)
                      ....++++.+...++........|.+.+++|.++++.+++.+.+.++..++.++.|+++||+|||+++..+.++..++.+
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~   82 (485)
T TIGR00711         3 LTIVLMLGTFMAVLDSTIVNVAIPTIAGDLGSSLSQVQWVITSYMLANAISIPLTGWLAKRFGTRRLFLISTFAFTLGSL   82 (485)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhhhHHHHHHHHHHHHHHHhHHHHHHHhCcHHHHHHHHHHHHHHHH
Confidence            44566667788888888889999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhcCch-hhHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Q 030356          107 LSAFSLNYLSLVTLRGLVGIGLGSG-PVCLSWFLEFIPASNRGMWMVVISIFWTLGTIFEAALAWGNILLNS  177 (179)
Q Consensus       107 ~~~~~~~~~~~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~~~~~~  177 (179)
                      ++.+++++..+++.|++.|++.+.. +...+++.|++|+++|+++.+++.....+|..++|.+++++.+..+
T Consensus        83 ~~~~~~~~~~l~~~~~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~  154 (485)
T TIGR00711        83 LCGVAPNLELMIIFRVIQGFGGGPLIPLSFSTLLNIYPPEKRGRAMAIWGLTVLVAPALGPTLGGWIIENYH  154 (485)
T ss_pred             HHhCcCCHHHHHHHHHHHHhhhhhHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhhhhhccHhHhccCcC
Confidence            9999999999999999999999988 8899999999999999999999999999999999999999987654

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.

>TIGR00903 2A0129 major facilitator 4 family protein

Probab=99.85  E-value=2.2e-20  Score=141.63  Aligned_cols=140  Identities=18%  Similarity=0.086  Sum_probs=117.7

Q ss_pred             HHHHHHHHHhhhcchhcccCCCchhHHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030356           38 EAMEIMILSFIGPAIKSEWNLSPAQETLLTSVVFAGLLVGSYSWGFISDNYGRRKGLLGIAMLASVAGLLSAFSLNYLSL  117 (179)
Q Consensus        38 ~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~d~~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~  117 (179)
                      +........+..|.+.+|+|.|+++.+++.+.+.+++.+++++.|+++||+|||+++..+......+.......+++..+
T Consensus         3 ~~~~~~~~~~~lp~i~~~~~~s~~~~g~~~s~~~~g~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~l   82 (368)
T TIGR00903         3 SQAIWVTFSPVLSLVAEDIDVSKEELGLLAITYPAAFLALTIPSGLLLDRAFKRWFLFGSLATFAAAAGRLLDPFNYEWL   82 (368)
T ss_pred             hhHHHHHHHhhHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHhccHHHH
Confidence            34455667788899999999999999999999999999999999999999999988766555544443333333689999


Q ss_pred             HHHHHHHHhhcCchhhHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Q 030356          118 VTLRGLVGIGLGSGPVCLSWFLEFIPASNRGMWMVVISIFWTLGTIFEAALAWGNILLNS  177 (179)
Q Consensus       118 ~~~~~l~G~~~g~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~~~~~~  177 (179)
                      ++.|++.|++.+........+.|++|+|+|++++++.+.+..+|..++++++.++.+..+
T Consensus        83 ~~~R~l~G~g~~~~~~~~~~~~~~~~~~~r~~a~~~~~~~~~lG~~l~~~~~~~l~~~~g  142 (368)
T TIGR00903        83 LACQLLAALGQPFLLNAFAPAASQIREERRDLVISLLSFAMYLGIIFALAAGLKIYTAGG  142 (368)
T ss_pred             HHHHHHHHhHhHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc
Confidence            999999999998655556666999999999999999999999999999999999987654

This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.

>PLN00028 nitrate transmembrane transporter; Provisional

Probab=99.85  E-value=5.6e-20  Score=143.74  Aligned_cols=154  Identities=16%  Similarity=0.176  Sum_probs=129.8

Q ss_pred             CCchHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhcccCCCchhHHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHH
Q 030356           19 GFGKFQILVLIYAGLGLVAEAMEIMILSFIGPAIKSEWNLSPAQETLLTSVVFAGLLVGSYSWGFISDNYGRRKGLLGIA   98 (179)
Q Consensus        19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~d~~G~r~~~~~~~   98 (179)
                      ..++++++.........+..........+..|.+.+++|++.++.+++.+.+.+++.+++++.|+++||+|||+++..+.
T Consensus        29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gls~~~~g~~~~~~~~~~~~~~~~~G~l~dr~G~r~~~~~~~  108 (476)
T PLN00028         29 SFARPHMRAFHLSWISFFTCFVSTFAAAPLLPIIRDNLNLTKSDIGNAGIASVSGSIFSRLAMGPVCDLYGPRYGSAFLL  108 (476)
T ss_pred             CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHH
Confidence            34444556666666677777777777888889999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhhHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 030356           99 MLASVAGLLSAFSLNYLSLVTLRGLVGIGLGSGPVCLSWFLEFIPASNRGMWMVVISIFWTLGTIFEAALAWGN  172 (179)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~  172 (179)
                      ++.+++.++.++++++..+++.|++.|++.+.......++.|++|+++|++++++.+....+|..+++.+...+
T Consensus       109 ~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~~~~~~~~~~i~~~~~~~~rg~a~g~~~~~~~~g~~~~~~~~~~i  182 (476)
T PLN00028        109 MLTAPAVFCMSLVSSATGFIAVRFFIGFSLATFVSCQYWMSTMFNGKIVGTANGIAAGWGNLGGGVTQLLMPLV  182 (476)
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHhcChhheeHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999988888899999999999999998876644556789999999999999998877777777666555443

>PRK10504 putative transporter; Provisional

Probab=99.85  E-value=5.4e-20  Score=143.53  Aligned_cols=151  Identities=19%  Similarity=0.222  Sum_probs=137.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhcchhcccCCCchhHHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHH
Q 030356           27 VLIYAGLGLVAEAMEIMILSFIGPAIKSEWNLSPAQETLLTSVVFAGLLVGSYSWGFISDNYGRRKGLLGIAMLASVAGL  106 (179)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~d~~G~r~~~~~~~~~~~~~~~  106 (179)
                      ....++++.++...+........|.+.+++|.++.+.+++.+.+.++..++.++.|+++||+|||++++.+..+.+++.+
T Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~   90 (471)
T PRK10504         11 QLWIVAFGFFMQSLDTTIVNTALPSMAQSLGESPLHMHMVIVSYVLTVAVMLPASGWLADRVGVRNIFFTAIVLFTLGSL   90 (471)
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHH
Confidence            34555666777888888888888999999999999999999999999999999999999999999999999888888888


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhcCch-hhHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Q 030356          107 LSAFSLNYLSLVTLRGLVGIGLGSG-PVCLSWFLEFIPASNRGMWMVVISIFWTLGTIFEAALAWGNILLNS  177 (179)
Q Consensus       107 ~~~~~~~~~~~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~~~~~~  177 (179)
                      .+.++++.+.+++.|++.|++.+.. +.....+.|.+|+++|+++.++++....+|..++|.+++++.+..+
T Consensus        91 ~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~g~l~~~~g  162 (471)
T PRK10504         91 FCALSGTLNELLLARVLQGVGGAMMVPVGRLTVMKIVPREQYMAAMTFVTLPGQVGPLLGPALGGLLVEYAS  162 (471)
T ss_pred             HHHHhCCHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhcc
Confidence            8888889999999999999999998 8889999999999999999999999999999999999999987654

>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily

Probab=99.85  E-value=5.2e-20  Score=139.71  Aligned_cols=144  Identities=19%  Similarity=0.233  Sum_probs=131.2

Q ss_pred             HHHHHHHHHHHHHhhhcchhcccCCCchhHHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHHHHHHHHH
Q 030356           34 GLVAEAMEIMILSFIGPAIKSEWNLSPAQETLLTSVVFAGLLVGSYSWGFISDNYGRRKGLLGIAMLASVAGLLSAFSLN  113 (179)
Q Consensus        34 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~d~~G~r~~~~~~~~~~~~~~~~~~~~~~  113 (179)
                      .............+..|.+.+++|.|+++.+++.+.+.++..+++++.|+++||+|||+++..+.++.+++.+.+.+.++
T Consensus        13 ~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~   92 (385)
T TIGR00710        13 LSILGPLGIDMYLPAFPEIAADLSTPASIVQMTLTLYLLGFAAGQLLWGPLSDRYGRRPVLLLGLFIFALSSLGLALSNN   92 (385)
T ss_pred             HHHHHHHHHHHhcccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHHHcc
Confidence            34455556666777789999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhcCch-hhHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Q 030356          114 YLSLVTLRGLVGIGLGSG-PVCLSWFLEFIPASNRGMWMVVISIFWTLGTIFEAALAWGNILLNS  177 (179)
Q Consensus       114 ~~~~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~~~~~~  177 (179)
                      ++.+.+.|++.|++.+.. +...+++.|++|+++|++++++.+....+|..++|.+++++.+..+
T Consensus        93 ~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~  157 (385)
T TIGR00710        93 IETLLVLRFVQAFGASAGSVISQALVRDIYPGEELSRIYSILMPVLALAPAVAPLLGGYILVWLS  157 (385)
T ss_pred             HHHHHHHHHHHHcchhHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            999999999999999988 8889999999999999999999999999999999999998877543

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.

>PRK09705 cynX putative cyanate transporter; Provisional

Probab=99.85  E-value=2.2e-20  Score=142.76  Aligned_cols=136  Identities=15%  Similarity=0.082  Sum_probs=125.4

Q ss_pred             HHHHhhhcchhcccCCCchhHHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030356           43 MILSFIGPAIKSEWNLSPAQETLLTSVVFAGLLVGSYSWGFISDNYGRRKGLLGIAMLASVAGLLSAFSLNYLSLVTLRG  122 (179)
Q Consensus        43 ~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~d~~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  122 (179)
                      ....+..|.+.+|+|.|.++.+++.+.+.++..+++++.|+++||+|||+++..+..+.+++.+.+++++++..+++.|+
T Consensus        26 ~~~~~~lp~i~~~~~~s~~~~g~~~s~~~~~~~l~~~~~g~l~dr~G~r~~l~~~~~l~~~~~~~~~~a~~~~~ll~~r~  105 (393)
T PRK09705         26 TSVGPLLPQLRQASGMSFSVAALLTALPVVTMGGLALAGSWLHQHVSERRSVAISLLLIAVGALMRELYPQSALLLSSAL  105 (393)
T ss_pred             hccchhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHhCchHHHHHHHHHHHHHHHHHHHCcchHHHHHHHH
Confidence            55677889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhcCch-hhHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHHHhccCCCC
Q 030356          123 LVGIGLGSG-PVCLSWFLEFIPASNRGMWMVVISIFWTLGTIFEAALAWGNILLNSKN  179 (179)
Q Consensus       123 l~G~~~g~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~~~~~~~~  179 (179)
                      +.|++.+.. +.....+.|++| ++|+++++++..+...|..+++.++.++.++..+|
T Consensus       106 l~Gig~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~g~~~~~~l~~~~~~w  162 (393)
T PRK09705        106 LGGVGIGIIQAVMPSVIKRRFQ-QRTPLVMGLWSAALMGGGGLGAAITPWLVQHSETW  162 (393)
T ss_pred             HHHhHHHHHhhhhhHHHHHHcc-ccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCH
Confidence            999999988 777888899987 88999999999999999999999998887765333

>TIGR00806 rfc RFC reduced folate carrier

Probab=99.85  E-value=5.2e-20  Score=140.67  Aligned_cols=133  Identities=14%  Similarity=0.057  Sum_probs=126.2

Q ss_pred             HHHHHHhhhcchhcccCCCchh-HHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030356           41 EIMILSFIGPAIKSEWNLSPAQ-ETLLTSVVFAGLLVGSYSWGFISDNYGRRKGLLGIAMLASVAGLLSAFSLNYLSLVT  119 (179)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~s~~~-~~~~~~~~~~~~~i~~~~~g~l~d~~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~  119 (179)
                      .+...++..|++.+|+|+|++| .+.+.+.++.+++++.++.|+++||+|.|+++..+.+.+++...+..++++...+.+
T Consensus        41 ~R~n~s~a~p~L~~elglT~~qv~G~I~s~F~ysYal~qIp~GlLaDrlG~K~vL~l~~l~Wsl~t~L~~fa~Sl~~L~i  120 (511)
T TIGR00806        41 FRPGESFITPYLLTVLNFTEETVTNEIIPVLPYSHLAVLVPVFLLTDYLRYKPVLVLQALSFVCVWLLLLLGTSVWHMQL  120 (511)
T ss_pred             hhchHHHHHHHHHHHcCCCHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4567788889999999999999 999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhcCchhhHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 030356          120 LRGLVGIGLGSGPVCLSWFLEFIPASNRGMWMVVISIFWTLGTIFEAALAWGNI  173 (179)
Q Consensus       120 ~~~l~G~~~g~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~~  173 (179)
                      .|++.|++.|.......++.+++|+++|+++.++.+.+..+|.+++++++.++.
T Consensus       121 ~R~llGvaEA~~~A~~syI~~WfP~kER~ratsi~~sg~~vG~~Ia~~L~qll~  174 (511)
T TIGR00806       121 MEVFYSVTMAARIAYSSYIFSLVPPSRYQRAAAYSRAAVLLGVFLSSVLGQLLV  174 (511)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999987778899999999999999999999999999999999999944

Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.

>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional

Probab=99.85  E-value=7.7e-20  Score=142.14  Aligned_cols=148  Identities=17%  Similarity=0.147  Sum_probs=123.9

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhcccCCCchhHHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHH
Q 030356           21 GKFQILVLIYAGLGLVAEAMEIMILSFIGPAIKSEWNLSPAQETLLTSVVFAGLLVGSYSWGFISDNYGRRKGLLGIAML  100 (179)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~d~~G~r~~~~~~~~~  100 (179)
                      ++++|..+..+.+.......+........|++.++ |.+..+.++..+...++..+++++.|+++||+|||++++.+.++
T Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~~-g~s~~~~g~~~~~~~i~~~~~~~~~G~l~Dr~g~k~~l~~~~~~  102 (452)
T PRK11273         24 RRLRWQIFLGIFFGYAAYYLVRKNFALAMPYLVEQ-GFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLIL  102 (452)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHc-CCCHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhHHHHHHH
Confidence            44555555555556666666666667778888888 99999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHH----HHHHHHHHHHHHHhhcCch-hhHHHHHHHhccccchhHHHHHHHHHHHHHHHH-HHHHH
Q 030356          101 ASVAGLLSAFSL----NYLSLVTLRGLVGIGLGSG-PVCLSWFLEFIPASNRGMWMVVISIFWTLGTIF-EAALA  169 (179)
Q Consensus       101 ~~~~~~~~~~~~----~~~~~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~-~~~i~  169 (179)
                      .++..+.+++.+    ++..+++.|++.|++.+.. +.....+.|++|+++|++++++++.+..+|..+ +|+++
T Consensus       103 ~~i~~~~~~~~~~~~~~~~~~~~~~~l~gi~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~  177 (452)
T PRK11273        103 AAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGLPPLLFL  177 (452)
T ss_pred             HHHHHHHHHhhhcccccHHHHHHHHHHHHHHHhccchHHHHHHHHhCChHHHHHHHHHHHHHHHhhhhHHHHHHH
Confidence            998888877653    6778888999999999887 777788899999999999999999999998754 55543

>PRK10091 MFS transport protein AraJ; Provisional

Probab=99.85  E-value=5.7e-20  Score=140.00  Aligned_cols=149  Identities=17%  Similarity=0.096  Sum_probs=134.5

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhcchhcccCCCchhHHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHHHH
Q 030356           29 IYAGLGLVAEAMEIMILSFIGPAIKSEWNLSPAQETLLTSVVFAGLLVGSYSWGFISDNYGRRKGLLGIAMLASVAGLLS  108 (179)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~d~~G~r~~~~~~~~~~~~~~~~~  108 (179)
                      .......+.............|.+.+|+|.+.++.+++.+...++..+++++.|+++||+|||+++..+.++.+++.+++
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~l~   85 (382)
T PRK10091          6 LSLALGTFGLGMAEFGIMGVLTELAHDVGISIPAAGHMISYYALGVVVGAPIIALFSSRYSLKHILLFLVALCVIGNAMF   85 (382)
T ss_pred             HHHHHHHHHHHhhHHHHHhChHHHHHHcCCCHHHHhHHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHHHHHHHHH
Confidence            34444556666677777788899999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhhcCch-hhHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Q 030356          109 AFSLNYLSLVTLRGLVGIGLGSG-PVCLSWFLEFIPASNRGMWMVVISIFWTLGTIFEAALAWGNILLNS  177 (179)
Q Consensus       109 ~~~~~~~~~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~~~~~~  177 (179)
                      .++++++.+++.|++.|++.+.. +.....+.|++|+++|+++++++..+..+|..++|++++++.+..+
T Consensus        86 ~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g  155 (382)
T PRK10091         86 TLSSSYLMLAIGRLVSGFPHGAFFGVGAIVLSKIIKPGKVTAAVAGMVSGMTVANLLGIPLGTYLSQEFS  155 (382)
T ss_pred             HHhCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCChHHhhHHHHHHHHHHHHHHHHhccHHHHHhhhcc
Confidence            99999999999999999999987 7778888999999999999999999999999999999998877543

>PRK03633 putative MFS family transporter protein; Provisional

Probab=99.85  E-value=7.2e-20  Score=139.37  Aligned_cols=148  Identities=20%  Similarity=0.226  Sum_probs=134.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhcchhcccCCCchhHHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHHH
Q 030356           28 LIYAGLGLVAEAMEIMILSFIGPAIKSEWNLSPAQETLLTSVVFAGLLVGSYSWGFISDNYGRRKGLLGIAMLASVAGLL  107 (179)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~d~~G~r~~~~~~~~~~~~~~~~  107 (179)
                      ...+.++.+..........+..|.+.+++|.|+.+.+++.+.+.++..+++++.|+++||+|||+++..+.++.+++...
T Consensus         8 ~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~s~~~~G~~~s~~~l~~~~~~~~~g~l~dr~g~k~~~~~~~~~~~~~~~~   87 (381)
T PRK03633          8 VLLLLCGLLLLTLAIAVLNTLVPLWLAQEHLPTWQVGVVSSSYFTGNLVGTLLAGYVIKRIGFNRSYYLASLIFAAGCAG   87 (381)
T ss_pred             HHHHHHHHHHHHHhhhhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44555566677777888888899999999999999999999999999999999999999999999999999999999998


Q ss_pred             HHHHHHHHHHHHHHHHHHhhcCch-hhHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 030356          108 SAFSLNYLSLVTLRGLVGIGLGSG-PVCLSWFLEFIPASNRGMWMVVISIFWTLGTIFEAALAWGNILL  175 (179)
Q Consensus       108 ~~~~~~~~~~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~~~~  175 (179)
                      +.++++++.+++.|++.|++.+.. +.....+.+..++++|+++++.++....+|..++|.+++.+.+.
T Consensus        88 ~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~  156 (381)
T PRK03633         88 LGLMVGFWSWLAWRFVAGIGCAMIWVVVESALMCSGTSRNRGRLLAAYMMVYYLGTVLGQLLVSKVSTE  156 (381)
T ss_pred             HHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence            899999999999999999999887 77777888899999999999999999999999999999987654

>PRK15034 nitrate/nitrite transport protein NarU; Provisional

Probab=99.85  E-value=2.2e-19  Score=138.40  Aligned_cols=148  Identities=14%  Similarity=0.139  Sum_probs=127.7

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhc-ccCCCchhHHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHH
Q 030356           22 KFQILVLIYAGLGLVAEAMEIMILSFIGPAIKS-EWNLSPAQETLLTSVVFAGLLVGSYSWGFISDNYGRRKGLLGIAML  100 (179)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~d~~G~r~~~~~~~~~  100 (179)
                      +..++.+....+.+..........++..+.+.+ |+|+|++|.+++.++..+++.+++++.|++.||+|.|+++..+.++
T Consensus        30 ~~a~r~l~~s~~~f~~~F~~w~~~~~l~~~~~~~~~~ls~~q~g~l~ai~~l~~al~rip~G~l~Dr~G~R~v~~~~~ll  109 (462)
T PRK15034         30 HIARRNLWISVSCLLLAFCVWMLFSAVTVNLNKIGFNFTTDQLFLLTALPSVSGALLRVPYSFMVPIFGGRRWTVFSTAI  109 (462)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHH
Confidence            334567777778888888888899998888876 7999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHH-----HHHHHHHHHHHHHHhhcCch-hhHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHH
Q 030356          101 ASVAGLLSAFS-----LNYLSLVTLRGLVGIGLGSG-PVCLSWFLEFIPASNRGMWMVVISIFWTLGTIFEAALAW  170 (179)
Q Consensus       101 ~~~~~~~~~~~-----~~~~~~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~  170 (179)
                      ..+..+..+++     +++..+++.|++.|++ +.. +.....+++++|+++||++++++....++|..+++++..
T Consensus       110 ~~i~~~~~~~a~~~~~~s~~~lli~r~l~Gig-g~~f~~~~~~vs~wfp~~~rG~A~Gi~~g~G~~G~~l~~~l~p  184 (462)
T PRK15034        110 LIIPCVWLGIAVQNPNTPFGIFIVIALLCGFA-GANFASSMGNISFFFPKAKQGSALGINGGLGNLGVSVMQLVAP  184 (462)
T ss_pred             HHHHHHHHHHHHcccCCCHHHHHHHHHHHHHH-HHhHHHHHHHHHHHCCHhHhHHHHHHHHHHHhhHHHHHHHHHH
Confidence            99999988876     7999999999999998 455 888999999999999999999996556666655444443

>TIGR00887 2A0109 phosphate:H+ symporter

Probab=99.85  E-value=1.6e-19  Score=142.08  Aligned_cols=159  Identities=19%  Similarity=0.333  Sum_probs=139.7

Q ss_pred             HhhcCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhccc-----CCCchhHHHHHHHHHHHHHHHHHHHhhhhcccc
Q 030356           15 LNHVGFGKFQILVLIYAGLGLVAEAMEIMILSFIGPAIKSEW-----NLSPAQETLLTSVVFAGLLVGSYSWGFISDNYG   89 (179)
Q Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~s~~~~~~~~~~~~~~~~i~~~~~g~l~d~~G   89 (179)
                      .++.+..+.+++....+.++.+.++++....+...|.+.+++     +.+..+.+++.+...++..+++++.|+++||+|
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~g~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~ig~~~~g~l~d~~G   84 (502)
T TIGR00887         5 ADTAPFGWQHFRAIVIAGVGFFTDSYDLFCISLVTKMLGYVYYHGKGPLPSSVSAAVNGSASIGTLAGQLFFGWLADKLG   84 (502)
T ss_pred             hhccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            345566778888888899999999999999888888776542     345567789999999999999999999999999


Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHhhcCch-hhHHHHHHHhccccchhHHHHHHHHHHHHHH
Q 030356           90 RRKGLLGIAMLASVAGLLSAFSLN------YLSLVTLRGLVGIGLGSG-PVCLSWFLEFIPASNRGMWMVVISIFWTLGT  162 (179)
Q Consensus        90 ~r~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~  162 (179)
                      ||+++..+.++..++.++++++++      +..+++.|++.|++.|.. +....++.|++|+++|+++.++.+....+|.
T Consensus        85 rr~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~g~  164 (502)
T TIGR00887        85 RKRVYGMELIIMIIATVASGLSPGSSPKSVMATLCFWRFWLGVGIGGDYPLSAIITSEFATKKWRGAMMAAVFAMQGFGI  164 (502)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHccCcccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcChhhHHHHHHHHHHHHHHHH
Confidence            999999999999999888887654      678899999999999998 8899999999999999999999999999999


Q ss_pred             HHHHHHHHHHh
Q 030356          163 IFEAALAWGNI  173 (179)
Q Consensus       163 ~~~~~i~~~~~  173 (179)
                      .+++.++..+.
T Consensus       165 ~~g~~~~~~~~  175 (502)
T TIGR00887       165 LAGAIVALIVL  175 (502)
T ss_pred             HHHHHHHHHHH
Confidence            99998887664

This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).

>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms

Probab=99.84  E-value=8.3e-20  Score=136.82  Aligned_cols=144  Identities=31%  Similarity=0.392  Sum_probs=128.3

Q ss_pred             HHHHHHHHHHHHHHhhhc-chhcccCCCchhHHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHHHHHHH
Q 030356           33 LGLVAEAMEIMILSFIGP-AIKSEWNLSPAQETLLTSVVFAGLLVGSYSWGFISDNYGRRKGLLGIAMLASVAGLLSAFS  111 (179)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~-~~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~d~~G~r~~~~~~~~~~~~~~~~~~~~  111 (179)
                      +..+..........+..| .+.+++|.|+++.+++.+...++..+++++.|+++||+|||+++..+.++.+++.+...++
T Consensus         3 l~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~   82 (352)
T PF07690_consen    3 LAFFLSGFGFSIISPALPLYLAEELGLSPSQIGLLFSAFFLGSALFSPFAGYLSDRFGRRRVLIIGLLLFALGSLLLAFA   82 (352)
T ss_dssp             HHHHHHHHHHHHHHHHHH-HHHCCSTTTSHCHHHHHHHHHHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeEeehhhhhhhHHHHhhhh
Confidence            445666666677777778 8889999999999999999999999999999999999999999999999999996666666


Q ss_pred             HHHHHHHHHHHHHHhhcCch-hhHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHHHhccC
Q 030356          112 LNYLSLVTLRGLVGIGLGSG-PVCLSWFLEFIPASNRGMWMVVISIFWTLGTIFEAALAWGNILLN  176 (179)
Q Consensus       112 ~~~~~~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~~~~~  176 (179)
                      ++.+.+++.|++.|++.+.. +....++.|++|+|+|++++++.+....+|..++|.+++.+.+..
T Consensus        83 ~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~  148 (352)
T PF07690_consen   83 SNFWLLLIARFLLGIGSGFFSPASNALIADWFPPEERGRAFGILSAGFSLGSILGPLLGGFLISYF  148 (352)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCTCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHC
T ss_pred             hhHHHHhhhccccccccccccccccccccccchhhhhhhccccccchhhhhhhcccchhhhhhhcc
Confidence            77778899999999999888 889999999999999999999999999999999999999988554

These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.

>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter

Probab=99.84  E-value=1.4e-19  Score=141.16  Aligned_cols=156  Identities=17%  Similarity=0.176  Sum_probs=139.9

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhc----------------------ccCCCchhHHHHHHHHHHHHHHHH
Q 030356           21 GKFQILVLIYAGLGLVAEAMEIMILSFIGPAIKS----------------------EWNLSPAQETLLTSVVFAGLLVGS   78 (179)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------~~~~s~~~~~~~~~~~~~~~~i~~   78 (179)
                      .+.++.+...++++....+.++...+...+.+.+                      |++.+..+.+++.+.+.+++.+++
T Consensus        14 ~~~r~~i~~~~~~~~~~~y~dr~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~   93 (465)
T TIGR00894        14 CSFRLFLSFLLHICNVIIIAQRICLSLTMVAMVNKENSTDLACLSAENELDNIKNPNFKWSGALQGLILSSHFYGQIIIQ   93 (465)
T ss_pred             cCcHHHHHHHHHHHHHHHHHHHhhheEEEEEcccCCCCCCccccccccccccccCCCCCCCHHHhhHHHHHHHHHHHHHH
Confidence            4566778888888888899999998888877766                      788999999999999999999999


Q ss_pred             HHHhhhhccccchhHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHhhcCch-hhHHHHHHHhccccchhHHHHHHH
Q 030356           79 YSWGFISDNYGRRKGLLGIAMLASVAGLLSAFS--LNYLSLVTLRGLVGIGLGSG-PVCLSWFLEFIPASNRGMWMVVIS  155 (179)
Q Consensus        79 ~~~g~l~d~~G~r~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~r~~~~~~~~  155 (179)
                      ++.|+++||+|||+++..+.++..+..++..++  .++..+++.|++.|++.+.. +....++.|++|+++|++++++.+
T Consensus        94 ~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~  173 (465)
T TIGR00894        94 IPVGYLAGKYVFKWSIGIGMFLSSVISIVIPWAAGGGIALVVFCRVIQGLAQGSVSPATHKIIVKWAPPKERSRLLGMST  173 (465)
T ss_pred             cchHHHHHHhCcchhhHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHhcccchhhHHHHHHhcCCHHHHHHHHHHHH
Confidence            999999999999999999999888888776543  45778889999999999998 889999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhccC
Q 030356          156 IFWTLGTIFEAALAWGNILLN  176 (179)
Q Consensus       156 ~~~~~g~~~~~~i~~~~~~~~  176 (179)
                      .+..+|..++|++++++.+..
T Consensus       174 ~~~~~g~~i~~~l~~~l~~~~  194 (465)
T TIGR00894       174 SGFQLGTFIFLPISGWLCESW  194 (465)
T ss_pred             HHHHHHHHHHHHHHHHHHhcc
Confidence            999999999999999988763

>PRK15402 multidrug efflux system translocase MdfA; Provisional

Probab=99.84  E-value=2.1e-19  Score=137.77  Aligned_cols=156  Identities=17%  Similarity=0.084  Sum_probs=138.0

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhcccCCCchhHHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHH
Q 030356           22 KFQILVLIYAGLGLVAEAMEIMILSFIGPAIKSEWNLSPAQETLLTSVVFAGLLVGSYSWGFISDNYGRRKGLLGIAMLA  101 (179)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~d~~G~r~~~~~~~~~~  101 (179)
                      ++.+.....+.+..+...+......+..|.+.+++|.|+.+.++..+.+.++..+++++.|+++||+|||+++..+....
T Consensus         9 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~   88 (406)
T PRK15402          9 RQALLFPLCLVLFEFATYIANDMIQPGMLAVVEDFNAGAEWVPTSMTAYLAGGMFLQWLLGPLSDRIGRRPVMLAGVAFF   88 (406)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhhhHhcchHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHH
Confidence            44556666666666677777777777788899999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhcCch-hhHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Q 030356          102 SVAGLLSAFSLNYLSLVTLRGLVGIGLGSG-PVCLSWFLEFIPASNRGMWMVVISIFWTLGTIFEAALAWGNILLNS  177 (179)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~~~~~~  177 (179)
                      +++.+...++++++.+++.|++.|++.+.. +...+.+.|.+|+++|.++.++......++..++|.+++++.+..+
T Consensus        89 ~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~~  165 (406)
T PRK15402         89 ILTCLAILLAQSIEQFTLLRFLQGIGLCFIGAVGYAAIQESFEEADAIKITALMANVALLAPLLGPLVGAALIHVLP  165 (406)
T ss_pred             HHHHHHHHHHccHHHHHHHHHHHHhHhhhHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence            999988888999999999999999999887 7788999999999999999999888888999999999999887654

>PRK10077 xylE D-xylose transporter XylE; Provisional

Probab=99.84  E-value=9.3e-20  Score=142.35  Aligned_cols=152  Identities=19%  Similarity=0.244  Sum_probs=131.4

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhccc--------CCCchhHHHHHHHHHHHHHHHHHHHhhhhccccchhH
Q 030356           22 KFQILVLIYAGLGLVAEAMEIMILSFIGPAIKSEW--------NLSPAQETLLTSVVFAGLLVGSYSWGFISDNYGRRKG   93 (179)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~s~~~~~~~~~~~~~~~~i~~~~~g~l~d~~G~r~~   93 (179)
                      +...+......++.+..+++...++...|.+.+++        +.++.+.+++.+.+.++..++++++|+++||+|||++
T Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ig~~~~~~~~G~l~dr~Grr~~   87 (479)
T PRK10077          8 SYIFSITLVATLGGLLFGYDTAVISGTVESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNRFGRRDS   87 (479)
T ss_pred             hHHHHHHHHHHHHHHhcCcccceehHhHHHHHHHhcccccccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHH
Confidence            44556667777788888888888887777777665        7888999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHhhcCch-hhHHHHHHHhccccchhHHHHHHHHHHHH
Q 030356           94 LLGIAMLASVAGLLSAFS------------LNYLSLVTLRGLVGIGLGSG-PVCLSWFLEFIPASNRGMWMVVISIFWTL  160 (179)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~  160 (179)
                      ++.+..+.+++.+..++.            +.+..+++.|++.|++.|.. +...+++.|++|+++|++++++.+....+
T Consensus        88 ~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~~  167 (479)
T PRK10077         88 LKIAAVLFFISALGSAWPEFGFTSIGPDNTGYVPEFVIYRIIGGIGVGLASMLSPMYIAEIAPAHIRGKLVSFNQFAIIF  167 (479)
T ss_pred             HHHHHHHHHHHHHHHHhhccccccccccchhHHHHHHHHHHHHhhhHhHHhhHHHHHHHhhCChhhhhHHHHHHHHHHHH
Confidence            999999988887776652            23466789999999999998 89999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHh
Q 030356          161 GTIFEAALAWGNI  173 (179)
Q Consensus       161 g~~~~~~i~~~~~  173 (179)
                      |..+++.++..+.
T Consensus       168 G~~~~~~~~~~~~  180 (479)
T PRK10077        168 GQLVVYFVNYFIA  180 (479)
T ss_pred             HHHHHHHHHHHHh
Confidence            9999988877654

>PRK10642 proline/glycine betaine transporter; Provisional

Probab=99.84  E-value=2.8e-19  Score=140.31  Aligned_cols=149  Identities=19%  Similarity=0.229  Sum_probs=127.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhcchhcccCCCchh-HHH-----HHHHHHHHHHHHHHHHhhhhccccchhHHHHHH
Q 030356           25 ILVLIYAGLGLVAEAMEIMILSFIGPAIKSEWNLSPAQ-ETL-----LTSVVFAGLLVGSYSWGFISDNYGRRKGLLGIA   98 (179)
Q Consensus        25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~-~~~-----~~~~~~~~~~i~~~~~g~l~d~~G~r~~~~~~~   98 (179)
                      ++......++.+++++|.....+..|.+.++++.+.++ ..+     ..++..++..+++++.|+++||+|||+++..+.
T Consensus        15 ~~~~~~~~~g~~~~~~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~Grr~~l~~~~   94 (490)
T PRK10642         15 RKAITAASLGNAMEWFDFGVYGFVAYALGKVFFPGADPSVQMIAALATFSVPFLIRPLGGLFFGMLGDKYGRQKILAITI   94 (490)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHH
Confidence            34566777888999999999999999999988644322 122     257788999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHH--------HHHHHHHHHhhcCch-hhHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHH
Q 030356           99 MLASVAGLLSAFSLNYLS--------LVTLRGLVGIGLGSG-PVCLSWFLEFIPASNRGMWMVVISIFWTLGTIFEAALA  169 (179)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~--------~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~  169 (179)
                      ++++++.+++++++|+..        +++.|+++|++.|.. +....++.|++|+++|++..++...+..+|..+++.+.
T Consensus        95 ~l~~i~~~~~a~~~~~~~~g~~a~~~l~~~R~l~G~g~g~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~G~~lg~~~~  174 (490)
T PRK10642         95 VIMSISTFCIGLIPSYATIGIWAPILLLLCKMAQGFSVGGEYTGASIFVAEYSPDRKRGFMGSWLDFGSIAGFVLGAGVV  174 (490)
T ss_pred             HHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHhHhhHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999998864        788999999999998 88999999999999999999999988888888887666


Q ss_pred             HHHh
Q 030356          170 WGNI  173 (179)
Q Consensus       170 ~~~~  173 (179)
                      ..+.
T Consensus       175 ~~~~  178 (490)
T PRK10642        175 VLIS  178 (490)
T ss_pred             HHHH
Confidence            5543

>PRK05122 major facilitator superfamily transporter; Provisional

Probab=99.84  E-value=7.8e-20  Score=139.80  Aligned_cols=148  Identities=18%  Similarity=0.125  Sum_probs=124.8

Q ss_pred             HHHHHHHHHHHHHHHHHhhhcc-hhcccCCCchhHHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHHHH
Q 030356           30 YAGLGLVAEAMEIMILSFIGPA-IKSEWNLSPAQETLLTSVVFAGLLVGSYSWGFISDNYGRRKGLLGIAMLASVAGLLS  108 (179)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~d~~G~r~~~~~~~~~~~~~~~~~  108 (179)
                      .+.+..+..........+..|. +.+++|.|+.+.+++.+++.++..+++++.|+++||+|||++++.+.++.+++.+.+
T Consensus        19 ~l~~~~~~~~~~~~~~~~~l~~~i~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~   98 (399)
T PRK05122         19 SIVMFTFISYLTIGLPLAVLPGYVHDQLGFSAFLAGLVISLQYLATLLSRPHAGRYADTLGPKKAVVFGLCGCALSGLLY   98 (399)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHhchhhHhHHhccCCcchHHHHHHHHHHHHHHH
Confidence            3444455566666666666665 567899999999999999999999999999999999999999999998887776654


Q ss_pred             HHH--------HHHHHHHHHHHHHHhhcCch-hhHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Q 030356          109 AFS--------LNYLSLVTLRGLVGIGLGSG-PVCLSWFLEFIPASNRGMWMVVISIFWTLGTIFEAALAWGNILLNS  177 (179)
Q Consensus       109 ~~~--------~~~~~~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~~~~~~  177 (179)
                      .++        .++..+++.|++.|++.+.. +....++.|+.|+|+|+++++++.....+|..++|.+++.+.+..+
T Consensus        99 ~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g  176 (399)
T PRK05122         99 LLAGLLAAWPVLSLLLLLLGRLLLGIGESLAGTGSILWGIGRVGALHTGRVISWNGIATYGALAIGAPLGVLLYHWGG  176 (399)
T ss_pred             HHhhhhhccchhHHHHHHHHHHHHHhhHHhhcchHHHHHHhhcChhhhccchhhhhhhhhHHHHHHHHHHHHHHHccc
Confidence            432        25667889999999999988 8888889999999999999999999999999999999999887654

>PRK15075 citrate-proton symporter; Provisional

Probab=99.84  E-value=2.3e-19  Score=138.80  Aligned_cols=150  Identities=20%  Similarity=0.253  Sum_probs=127.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhcchhcccCCCchhHHH-HHHHH-----HHHHHHHHHHHhhhhccccchhHHHHH
Q 030356           24 QILVLIYAGLGLVAEAMEIMILSFIGPAIKSEWNLSPAQETL-LTSVV-----FAGLLVGSYSWGFISDNYGRRKGLLGI   97 (179)
Q Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~-~~~~~-----~~~~~i~~~~~g~l~d~~G~r~~~~~~   97 (179)
                      |++....++++.+.+++|........|.+.+|++.++.+.+. ..+..     .++..+++++.|+++||+|||++++.+
T Consensus        13 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~Grr~~l~~~   92 (434)
T PRK15075         13 KARAILRVTSGNFLEMFDFFLFGFYATAIAKTFFPAGNEFASLMLTFAVFGAGFLMRPLGAIVLGAYIDRVGRRKGLIVT   92 (434)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhchHHHHHHH
Confidence            445677888899999999999999999999999988776543 33332     223347899999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHH--------HHHHHHHHHHhhcCch-hhHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHH
Q 030356           98 AMLASVAGLLSAFSLNYL--------SLVTLRGLVGIGLGSG-PVCLSWFLEFIPASNRGMWMVVISIFWTLGTIFEAAL  168 (179)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~--------~~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i  168 (179)
                      .++..++.+++++++++.        .+++.|++.|++.+.. +....++.|++|+++|++++++++....+|..+++.+
T Consensus        93 ~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~rg~~~~~~~~~~~~g~~~g~~~  172 (434)
T PRK15075         93 LSIMASGTLLIAFVPGYATIGLAAPLLVLLGRLLQGFSAGVELGGVSVYLAEIATPGRKGFYTSWQSASQQVAVVFAALL  172 (434)
T ss_pred             HHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHhhCCcccchHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999988876        3688999999999988 8788999999999999999999999888888888888


Q ss_pred             HHHHh
Q 030356          169 AWGNI  173 (179)
Q Consensus       169 ~~~~~  173 (179)
                      +..+.
T Consensus       173 g~~l~  177 (434)
T PRK15075        173 GYLLN  177 (434)
T ss_pred             HHHHH
Confidence            77764

>PRK15403 multidrug efflux system protein MdtM; Provisional

Probab=99.84  E-value=2.5e-19  Score=137.87  Aligned_cols=147  Identities=16%  Similarity=0.079  Sum_probs=129.8

Q ss_pred             HHHHHHHHHHHHHHHHhhhcchhcccCCCchhHHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHHHHHH
Q 030356           31 AGLGLVAEAMEIMILSFIGPAIKSEWNLSPAQETLLTSVVFAGLLVGSYSWGFISDNYGRRKGLLGIAMLASVAGLLSAF  110 (179)
Q Consensus        31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~d~~G~r~~~~~~~~~~~~~~~~~~~  110 (179)
                      +.+..+..........+.+|.+.++++.+.++.++..+++.++..+++++.|+++||+|||++++.+.++.+++.+.+.+
T Consensus        21 ~~~~~~~~~~~~~~~~p~l~~i~~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~  100 (413)
T PRK15403         21 LILYDFAAYLTTDLIQPGIINVVRDFNADVSLAPASVSLYLAGGMALQWLLGPLSDRIGRRPVLITGALIFTLACAATLF  100 (413)
T ss_pred             HHHHHHHHHHHHHhhccCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhHHHHHcCchHHHHHHHHHHHHHHHHHHH
Confidence            33344445555566667778889999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhhcCch-hhHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Q 030356          111 SLNYLSLVTLRGLVGIGLGSG-PVCLSWFLEFIPASNRGMWMVVISIFWTLGTIFEAALAWGNILLNS  177 (179)
Q Consensus       111 ~~~~~~~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~~~~~~  177 (179)
                      ++++..+++.|+++|++.+.. +....++.|++|+++|++++++++....+|..++|.+++.+.+..+
T Consensus       101 a~~~~~l~~~r~l~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lg~~l~~~~g  168 (413)
T PRK15403        101 TTSMTQFLIARFIQGTSICFIATVGYVTVQEAFGQTKGIKLMAIITSIVLVAPIIGPLSGAALMHFVH  168 (413)
T ss_pred             cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            999999999999999998766 6667888999999999999999999999999999999998886543

>TIGR00893 2A0114 d-galactonate transporter

Probab=99.83  E-value=4.9e-20  Score=139.54  Aligned_cols=142  Identities=28%  Similarity=0.340  Sum_probs=132.0

Q ss_pred             HHHHHHHHHHHhhhcchhcccCCCchhHHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHH
Q 030356           36 VAEAMEIMILSFIGPAIKSEWNLSPAQETLLTSVVFAGLLVGSYSWGFISDNYGRRKGLLGIAMLASVAGLLSAFSLNYL  115 (179)
Q Consensus        36 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~d~~G~r~~~~~~~~~~~~~~~~~~~~~~~~  115 (179)
                      ..+..+....+...|.+.+++|.++.+.+++.+...++..+++++.|+++||+|||+++..+.++.+++...++++++++
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~   83 (399)
T TIGR00893         4 VINYLDRANLSFAAPMLQEDLGLSAAQYGYVFSAFSWGYVVGQFPGGWLLDRFGARKTLAVFIVIWGVFTGLQAFAGAYV   83 (399)
T ss_pred             hHHHHHHHhhhHhHHHHHHhhCCChhhHHHHHHHHHHHHHHHHHhHHHHHHhcCcceeeHHHHHHHHHHHHHHHHHcCHH
Confidence            45667777788888999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhcCch-hhHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Q 030356          116 SLVTLRGLVGIGLGSG-PVCLSWFLEFIPASNRGMWMVVISIFWTLGTIFEAALAWGNILLNS  177 (179)
Q Consensus       116 ~~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~~~~~~  177 (179)
                      .+++.|++.|++.+.. +....++.|++|+|+|++++++.+....+|..++|.+++.+.+..+
T Consensus        84 ~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~  146 (399)
T TIGR00893        84 SLYILRVLLGAAEAPFFPGIILIVASWFPASERATAVSIFNSAQGLGGIIGGPLVGWILIHFS  146 (399)
T ss_pred             HHHHHHHHHHHHHHhhhhHHHHHHHHhCCHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHhCC
Confidence            9999999999999988 8889999999999999999999999999999999999998876544

>PRK12382 putative transporter; Provisional

Probab=99.83  E-value=2.3e-19  Score=136.93  Aligned_cols=145  Identities=17%  Similarity=0.169  Sum_probs=120.5

Q ss_pred             HHHHHHHHHHHHHHhhhcc-hhcccCCCchhHHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHHHH---
Q 030356           33 LGLVAEAMEIMILSFIGPA-IKSEWNLSPAQETLLTSVVFAGLLVGSYSWGFISDNYGRRKGLLGIAMLASVAGLLS---  108 (179)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~-~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~d~~G~r~~~~~~~~~~~~~~~~~---  108 (179)
                      +..+..........+..|. +.+|+|.|+.+.+++.+.+.++..+++++.|+++||+|||+++..+.+...++.+..   
T Consensus        22 ~~~~~~~~~~~~~~p~l~~~l~~~lg~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~~  101 (392)
T PRK12382         22 FAVFLTYMTVGLPLPVIPLFVHHDLGFGNTMVGIAVGIQFLATVLTRGYAGRLADQYGAKRSALQGMLACGLAGLAYLLA  101 (392)
T ss_pred             HHHHHHHHHHHHHhhhhhHHHHHhcCCcHHHHHHHHHHHHHHHHHHhhhhhHHHHhhcchHHHHHHHHHHHHHHHHHHhh
Confidence            3344445555555555564 568899999999999999999999999999999999999999998887766654322   


Q ss_pred             H-----HHHHHHHHHHHHHHHHhhcCch-hhHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Q 030356          109 A-----FSLNYLSLVTLRGLVGIGLGSG-PVCLSWFLEFIPASNRGMWMVVISIFWTLGTIFEAALAWGNILLNS  177 (179)
Q Consensus       109 ~-----~~~~~~~~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~~~~~~  177 (179)
                      .     ..+++..+++.|++.|++.+.. +...+++.|++|+|+|++++++++.+..+|..++|++++++.+..+
T Consensus       102 ~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~a~~~~~~~~~~g~~~g~~~~~~l~~~~g  176 (392)
T PRK12382        102 AILPVSAPFKFALLVVGRLILGFGESQLLTGALTWGLGLVGPKHSGKVMSWNGMAMYGALAAGAPLGLLLHSHFG  176 (392)
T ss_pred             hccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCccccchhhhHHHHHHHHHHHHHHHHHHHHHhccC
Confidence            1     1357888999999999999887 7778899999999999999999999999999999999998877654

>PRK11652 emrD multidrug resistance protein D; Provisional

Probab=99.83  E-value=7.1e-19  Score=134.36  Aligned_cols=153  Identities=13%  Similarity=0.124  Sum_probs=133.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhcchhcccCCCchhHHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHH
Q 030356           25 ILVLIYAGLGLVAEAMEIMILSFIGPAIKSEWNLSPAQETLLTSVVFAGLLVGSYSWGFISDNYGRRKGLLGIAMLASVA  104 (179)
Q Consensus        25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~d~~G~r~~~~~~~~~~~~~  104 (179)
                      ++..........+.........+..|.+.+++|.|+.+.+++.+.+.++..+++++.|+++||+|||+++..+.....++
T Consensus         7 ~~~l~~~~~~~~~~~~~~~~~~p~~~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~grr~~~~~~~~~~~~~   86 (394)
T PRK11652          7 VNLLFMLVLLVAVGQMAQTIYVPAIADMARDLNVREGAVQAVMAAYLLTYGLSQLFYGPLSDRVGRRPVILVGMSIFILG   86 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHH
Confidence            34444444445555566666667778999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhcCch-hhHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Q 030356          105 GLLSAFSLNYLSLVTLRGLVGIGLGSG-PVCLSWFLEFIPASNRGMWMVVISIFWTLGTIFEAALAWGNILLNS  177 (179)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~~~~~~  177 (179)
                      .+.+.+++++..+++.|++.|++.+.. +.......|.+++++|+++.+.++.+..++..++|.+++++.+..+
T Consensus        87 ~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g  160 (394)
T PRK11652         87 TLVALFAHSLTVLIAASAIQGLGTGVGGVMARTLPRDLYEGTQLRHANSLLNMGILVSPLLAPLIGGLLTTLFG  160 (394)
T ss_pred             HHHHHHHccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence            988888999999999999999998877 7777888999999999999999999999999999999999887544

>PRK09952 shikimate transporter; Provisional

Probab=99.83  E-value=7.3e-19  Score=136.20  Aligned_cols=150  Identities=19%  Similarity=0.275  Sum_probs=125.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhcc-hhccc--CCCchhHHHHH-----HHHHHHHHHHHHHHhhhhccccchhHHH
Q 030356           24 QILVLIYAGLGLVAEAMEIMILSFIGPA-IKSEW--NLSPAQETLLT-----SVVFAGLLVGSYSWGFISDNYGRRKGLL   95 (179)
Q Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~--~~s~~~~~~~~-----~~~~~~~~i~~~~~g~l~d~~G~r~~~~   95 (179)
                      +++......++.+.++++.....+..|. +.+++  +.++.+ +++.     ++..++..+++++.|+++||+|||+++.
T Consensus        20 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~G~l~Dr~Grr~~l~   98 (438)
T PRK09952         20 ARRAALGSFAGAVVDWYDFLLYGITAALVFNREFFPQVSPAM-GTLAAFATFGVGFLFRPLGGVVFGHFGDRLGRKRMLM   98 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcHH-HHHHHHHHHHHHHHHHhhHHHHHHHHHHhhccHHHHH
Confidence            3456777777889999999998887764 45554  566653 4443     3455667789999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHhhcCch-hhHHHHHHHhccccchhHHHHHHHHHHHHHHHHHH
Q 030356           96 GIAMLASVAGLLSAFSLNYL--------SLVTLRGLVGIGLGSG-PVCLSWFLEFIPASNRGMWMVVISIFWTLGTIFEA  166 (179)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~~~--------~~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~  166 (179)
                      .+.++++++.+++++++++.        .+++.|+++|++.|.. +....++.|++|+++|++..+..+.+..+|..+++
T Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~rg~~~~~~~~g~~~G~~l~~  178 (438)
T PRK09952         99 LTVWMMGIATALIGLLPSFSTIGWWAPVLLVTLRAIQGFAVGGEWGGAALLAVESAPKNKKAFYSSGVQVGYGVGLLLST  178 (438)
T ss_pred             HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHH
Confidence            99999999999999998876        4788999999999998 88889999999999999999999999999999988


Q ss_pred             HHHHHHhc
Q 030356          167 ALAWGNIL  174 (179)
Q Consensus       167 ~i~~~~~~  174 (179)
                      .+..++..
T Consensus       179 ~~~~~l~~  186 (438)
T PRK09952        179 GLVSLISM  186 (438)
T ss_pred             HHHHHHHH
Confidence            77776653

>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator)

Probab=99.83  E-value=6e-19  Score=133.21  Aligned_cols=145  Identities=23%  Similarity=0.273  Sum_probs=125.4

Q ss_pred             HHHHHHHHHHHHHHHHHhhhcc-hhcccCCCchhHHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHHHH
Q 030356           30 YAGLGLVAEAMEIMILSFIGPA-IKSEWNLSPAQETLLTSVVFAGLLVGSYSWGFISDNYGRRKGLLGIAMLASVAGLLS  108 (179)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~d~~G~r~~~~~~~~~~~~~~~~~  108 (179)
                      ..+++++..........+..|. +.+++|.|+.+.+++.+...++..+++++.|+++||+|||+.+..+.++..++.+++
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~i~~~~~   84 (366)
T TIGR00886         5 FSWFGFFLSFSVWFAFSPLAVQMIKDDLGLSTAQLGNLVAVPVLAGAVLRIILGFLVDKFGPRYTTTLSLLLLAIPCLWA   84 (366)
T ss_pred             HHHHHHHHHHHHHHHhHHhhhHHHHHHhCCCHHHhhHhhHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHH
Confidence            3445556666677777888885 889999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHH-HHHHHHHHHHHHHhhcCchhhHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 030356          109 AFSL-NYLSLVTLRGLVGIGLGSGPVCLSWFLEFIPASNRGMWMVVISIFWTLGTIFEAALAWGNIL  174 (179)
Q Consensus       109 ~~~~-~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~~~  174 (179)
                      .+++ +++.+++.|++.|++.+......+++.|++|+++|+++++++.....+|..+++.++..+..
T Consensus        85 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~  151 (366)
T TIGR00886        85 GLAVQSYSVLLLLRLFIGIAGGSFASCMPWISFFFPKKIQGTALGLAAGWGNMGGGVAQFVMPPIIG  151 (366)
T ss_pred             HHHhhhHHHHHHHHHHHHHhchhhHhHHHHHHHhcCHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence            9999 99999999999999865446678899999999999999999997777777777776665543

>TIGR00890 2A0111 Oxalate/Formate Antiporter

Probab=99.82  E-value=1.2e-19  Score=136.91  Aligned_cols=137  Identities=18%  Similarity=0.261  Sum_probs=121.2

Q ss_pred             HHHHHHHHHhhhcchhcccCCCchhHHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030356           38 EAMEIMILSFIGPAIKSEWNLSPAQETLLTSVVFAGLLVGSYSWGFISDNYGRRKGLLGIAMLASVAGLLSAFSLNYLSL  117 (179)
Q Consensus        38 ~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~d~~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~  117 (179)
                      .....+......|.+.+++|.|+++.+++.+.+.++..+++++.|+++||+|||+++..+.++.+++.+.++++++++.+
T Consensus        15 ~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~d~~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~   94 (377)
T TIGR00890        15 TSGYVYTWTLLAPPLGRYFGVGVTAVAIWFTLLLIGLAMSMPVGGLLADKFGPRAVAMLGGILYGLGFTFYAIADSLAAL   94 (377)
T ss_pred             HhhHHhhhhhHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHcCccchhHHhHHHHHHHHHHHHHHHHHHHH
Confidence            33345567788899999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhcCch-hhHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 030356          118 VTLRGLVGIGLGSG-PVCLSWFLEFIPASNRGMWMVVISIFWTLGTIFEAALAWGNILL  175 (179)
Q Consensus       118 ~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~~~~  175 (179)
                      ++.|++.|++.+.. +.....+.|++| |+|+++.++...+..+|..+++++...+.+.
T Consensus        95 ~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~  152 (377)
T TIGR00890        95 YLTYGLASAGVGIAYGIALNTAVKWFP-DKRGLASGIIIGGYGLGSFILSPLITSVINL  152 (377)
T ss_pred             HHHHHHHhHHHHHHHHhHHHHHHHHcC-cccHHHHHHHHHhcchhHhHHHHHHHHHHhc
Confidence            99999999999877 777778888887 6799999999999999988776666655543

>TIGR00900 2A0121 H+ Antiporter protein

Probab=99.82  E-value=3.6e-19  Score=133.88  Aligned_cols=144  Identities=15%  Similarity=0.102  Sum_probs=128.6

Q ss_pred             HHHHHHHHHHHHHhhhcchhcccCCCchhHHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHHHHHHHH-
Q 030356           34 GLVAEAMEIMILSFIGPAIKSEWNLSPAQETLLTSVVFAGLLVGSYSWGFISDNYGRRKGLLGIAMLASVAGLLSAFSL-  112 (179)
Q Consensus        34 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~d~~G~r~~~~~~~~~~~~~~~~~~~~~-  112 (179)
                      ..+.............|.+.++++.++.+.+++.+...++..+++++.|+++||+|||+++..+..+..++..+..+.+ 
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~   86 (365)
T TIGR00900         7 AQLISLIGTAITQVALPLYVLAGTGSASVLSLAALAGMLPYVVLSPIAGALADRYDRKKVMIGADLIRAVLVAVLPFVAL   86 (365)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHhhhHHHHhhchhHHHHHHHHHHHHHHHHHHHHHH
Confidence            3445555556666667888888999999999999999999999999999999999999999999998888888887777 


Q ss_pred             ----HHHHHHHHHHHHHhhcCch-hhHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Q 030356          113 ----NYLSLVTLRGLVGIGLGSG-PVCLSWFLEFIPASNRGMWMVVISIFWTLGTIFEAALAWGNILLNS  177 (179)
Q Consensus       113 ----~~~~~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~~~~~~  177 (179)
                          +++.+++.|++.|++.+.. +...+++.|++|+++|++++++.+....+|..++|.+++++.+..+
T Consensus        87 ~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g  156 (365)
T TIGR00900        87 LGGLNIWQVYVLAGILAIAQAFFTPAYQAMLPDLVPEEQLTQANSLSQAVRSLFYIVGPGIGGLMYATLG  156 (365)
T ss_pred             cCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence                8999999999999999988 8889999999999999999999999999999999999999886543

>TIGR00712 glpT glycerol-3-phosphate transporter

Probab=99.82  E-value=4.9e-19  Score=137.13  Aligned_cols=151  Identities=18%  Similarity=0.150  Sum_probs=126.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhcchhcccCCCchhHHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHH
Q 030356           23 FQILVLIYAGLGLVAEAMEIMILSFIGPAIKSEWNLSPAQETLLTSVVFAGLLVGSYSWGFISDNYGRRKGLLGIAMLAS  102 (179)
Q Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~d~~G~r~~~~~~~~~~~  102 (179)
                      .++..+....+.......+........|.+.+ +|.|+++.++..+.+.++..+++++.|+++||+|||+++..+.++.+
T Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~~~~~~~~~~~~~  102 (438)
T TIGR00712        24 LRWQVFLGIFFGYAAYYLVRKNFALAMPYLVE-QGFSKGELGFALSAISIAYGFSKFIMGSVSDRSNPRVFLPAGLILSA  102 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHhccHHhhhHHHHH-cCCCHhHhHHHHHHHHHHHHHhhhccchhhhccCCceehHHHHHHHH
Confidence            34555555556666666666666667777775 59999999999999999999999999999999999999999988888


Q ss_pred             HHHHHHHHH----HHHHHHHHHHHHHHhhcCch-hhHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 030356          103 VAGLLSAFS----LNYLSLVTLRGLVGIGLGSG-PVCLSWFLEFIPASNRGMWMVVISIFWTLGTIFEAALAWGNIL  174 (179)
Q Consensus       103 ~~~~~~~~~----~~~~~~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~~~  174 (179)
                      ++.+.....    +++..+.+.|++.|++.+.. +.....+.|++|+++|++++++++....+|+.++|.+.+...+
T Consensus       103 ~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~g~~~~~~l~~~~~~  179 (438)
T TIGR00712       103 AVMLLMGFVPWATSSIAIMFVLLFLNGWFQGMGWPPCGRTMVHWWSQSERGTIVSIWNCAHNIGGGIPPLLVLLGMA  179 (438)
T ss_pred             HHHHHHhccccccchHHHHHHHHHHHHHHhhcchHHHHHHHHHhcCcccchhHHHHHHHHHHhHhHHHHHHHHHHHH
Confidence            888776653    45667788899999999988 7788889999999999999999999999999999887776544

This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.

>PRK11195 lysophospholipid transporter LplT; Provisional

Probab=99.82  E-value=1e-18  Score=133.71  Aligned_cols=139  Identities=17%  Similarity=0.117  Sum_probs=119.0

Q ss_pred             HHHHHHHHHHHHHhhhcchhcccCCCchhHHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHHHHHHHHH
Q 030356           34 GLVAEAMEIMILSFIGPAIKSEWNLSPAQETLLTSVVFAGLLVGSYSWGFISDNYGRRKGLLGIAMLASVAGLLSAFSLN  113 (179)
Q Consensus        34 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~d~~G~r~~~~~~~~~~~~~~~~~~~~~~  113 (179)
                      +.++............+.+.+|++.++.+.+++.+.+.+++.+..++.|+++||+|||++++.+.++.+++.+.+.+.++
T Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~l~~~l~~~~~G~laDr~grr~vl~~~~~~~~~~~~~~~~~~~   90 (393)
T PRK11195         11 AQFFSALADNALLFAAIALLKELHYPDWSQPLLQMFFVLAYIVLAPFVGAFADSFPKGRVMFIANGIKLLGCLLMLFGIH   90 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhhhhHhhhccCCchhhHHHHHHHHHHHHHHHHHHH
Confidence            34444443333344445567888989999999999999999999999999999999999999999998888877766665


Q ss_pred             HHHHHHHHHHHHhhcCch-hhHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 030356          114 YLSLVTLRGLVGIGLGSG-PVCLSWFLEFIPASNRGMWMVVISIFWTLGTIFEAALAWGNILL  175 (179)
Q Consensus       114 ~~~~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~~~~  175 (179)
                      .   ++.|+++|++.+.. |...+++.|++|+|+|++++++.+....+|..++|.+++++.+.
T Consensus        91 ~---~~~r~l~G~~~a~~~pa~~a~i~~~~~~~~~~~a~~~~~~~~~~~~~~Gp~lgG~l~~~  150 (393)
T PRK11195         91 P---LLAYGLVGIGAAAYSPAKYGILTELLPGEKLVKANGWMEGSTIAAILLGTVLGGALADP  150 (393)
T ss_pred             H---HHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4   67899999999998 99999999999999999999999999999999999999998763

>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

Probab=99.81  E-value=1.1e-18  Score=130.37  Aligned_cols=145  Identities=28%  Similarity=0.358  Sum_probs=133.6

Q ss_pred             HHHHHHHHHHHHHHHhhhcchhcccCCCchhHHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHHHHHHH
Q 030356           32 GLGLVAEAMEIMILSFIGPAIKSEWNLSPAQETLLTSVVFAGLLVGSYSWGFISDNYGRRKGLLGIAMLASVAGLLSAFS  111 (179)
Q Consensus        32 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~d~~G~r~~~~~~~~~~~~~~~~~~~~  111 (179)
                      .+..+.............|.+.+++|.++.+.+++.+...++..+++++.|+++||+|||+.+..+.....++.+.....
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~g~r~~~~~~~~~~~~~~~~~~~~   84 (352)
T cd06174           5 FLGFFLSGLDRGLLSPALPLLAEDLGLSASQAGLIVSAFSLGYALGSLLAGYLSDRFGRRRVLLLGLLLFALGSLLLAFA   84 (352)
T ss_pred             HHHHHHHHHhhhhhHhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCchhhHHHHHHHHHHHHHHHHh
Confidence            34456667777777888888999999999999999999999999999999999999999999999999999999999888


Q ss_pred             HHHHHHHHHHHHHHhhcCch-hhHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHHHhccC
Q 030356          112 LNYLSLVTLRGLVGIGLGSG-PVCLSWFLEFIPASNRGMWMVVISIFWTLGTIFEAALAWGNILLN  176 (179)
Q Consensus       112 ~~~~~~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~~~~~  176 (179)
                      +++..+++.|++.|++.+.. +...+++.|++|+|+|++.+++.+....+|..++|.+++.+.+..
T Consensus        85 ~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~  150 (352)
T cd06174          85 SSLWLLLVGRFLLGLGGGALYPAAAALIAEWFPPKERGRALGLFSAGFGLGALLGPLLGGLLAESL  150 (352)
T ss_pred             ccHHHHHHHHHHHHcccccccHhHHHHHHHhCCccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            99999999999999999998 889999999999999999999999999999999999999988754

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3

>TIGR00879 SP MFS transporter, sugar porter (SP) family

Probab=99.81  E-value=2e-19  Score=139.49  Aligned_cols=143  Identities=22%  Similarity=0.362  Sum_probs=122.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhcchhcccCCC--------chhHHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHH
Q 030356           27 VLIYAGLGLVAEAMEIMILSFIGPAIKSEWNLS--------PAQETLLTSVVFAGLLVGSYSWGFISDNYGRRKGLLGIA   98 (179)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s--------~~~~~~~~~~~~~~~~i~~~~~g~l~d~~G~r~~~~~~~   98 (179)
                      ....+.+..+...++........+.+..+++.+        ..+.+++.+.+.++..+++++.|+++||+|||++++.+.
T Consensus        29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~  108 (481)
T TIGR00879        29 LSLIAAIGGLMFGYDTGVIGGALALPAFEFKFTSANSDSYSSSLWGLVVSIFLVGGFIGALFAGWLSDRFGRKKSLLIIA  108 (481)
T ss_pred             HHHHHHHHHHhcccccchhhhhhhcHHHHHhcCCcccCCCChhHHHHHHHHHHHHHHHHHHHhhHhhhhhhhHHHHHHHH
Confidence            333444444556666667777778777777666        789999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHH---HHHHHHHHHHHHHhhcCch-hhHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHH
Q 030356           99 MLASVAGLLSAFSL---NYLSLVTLRGLVGIGLGSG-PVCLSWFLEFIPASNRGMWMVVISIFWTLGTIFEAALA  169 (179)
Q Consensus        99 ~~~~~~~~~~~~~~---~~~~~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~  169 (179)
                      ++..++.++....+   +++.+++.|++.|++.+.. +....++.|++|+++|++++++++....+|..+++.++
T Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~  183 (481)
T TIGR00879       109 LLFVIGAILMGLAAFALSVEMLIVGRVLLGIGVGIASALVPMYLSEIAPKALRGALTSLYQLAITFGILVAYGFG  183 (481)
T ss_pred             HHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHhHHHHHHHccCChhhhhhhhhHHHHHHHHHHHHHHHHH
Confidence            99988888875543   4457889999999999988 88899999999999999999999999999999999998

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)

>PRK10473 multidrug efflux system protein MdtL; Provisional

Probab=99.81  E-value=2.1e-18  Score=131.71  Aligned_cols=142  Identities=22%  Similarity=0.189  Sum_probs=126.9

Q ss_pred             HHHHHHHHHHHHhhhcchhcccCCCchhHHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHHHHHHHHHH
Q 030356           35 LVAEAMEIMILSFIGPAIKSEWNLSPAQETLLTSVVFAGLLVGSYSWGFISDNYGRRKGLLGIAMLASVAGLLSAFSLNY  114 (179)
Q Consensus        35 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~d~~G~r~~~~~~~~~~~~~~~~~~~~~~~  114 (179)
                      .+.............|.+.+++|.|+++.++..+.+.++..+++++.|+++||+|||+.+..+.+...++...+..+++.
T Consensus        12 ~~~~~~~~~~~~~~lp~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~i~~~~~~~~~~~   91 (392)
T PRK10473         12 VLLYPAGIDMYLVGLPRIAADLNASEAQLHIAFSVYLAGMAAAMLFAGKIADRSGRKPVAIPGAALFIIASLLCSLAETS   91 (392)
T ss_pred             HHHHHHHHHHHhhhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHhHHHHHhCChHHHHHHHHHHHHHHHHHHHhCcH
Confidence            34444444455567799999999999999999999999999999999999999999999999999999999988888999


Q ss_pred             HHHHHHHHHHHhhcCch-hhHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHHHhccC
Q 030356          115 LSLVTLRGLVGIGLGSG-PVCLSWFLEFIPASNRGMWMVVISIFWTLGTIFEAALAWGNILLN  176 (179)
Q Consensus       115 ~~~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~~~~~  176 (179)
                      ..+++.|++.|++.+.. +....++.|.+|+++|+++.++.+....++..++|.+++.+.+..
T Consensus        92 ~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~i~~~~~~~i~~~l~~~~  154 (392)
T PRK10473         92 SLFLAGRFLQGIGAGCCYVVAFAILRDTLDDRRRAKVLSLLNGITCIIPVLAPVLGHLIMLKF  154 (392)
T ss_pred             HHHHHHHHHHHhhhhHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc
Confidence            99999999999999887 788899999999999999999999999999999999998887654

>TIGR00881 2A0104 phosphoglycerate transporter family protein

Probab=99.81  E-value=1.6e-19  Score=136.34  Aligned_cols=143  Identities=23%  Similarity=0.261  Sum_probs=130.2

Q ss_pred             HHHHHHHHHHHHHhhhcchhcccCCCchhHHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHHHHHHHHH
Q 030356           34 GLVAEAMEIMILSFIGPAIKSEWNLSPAQETLLTSVVFAGLLVGSYSWGFISDNYGRRKGLLGIAMLASVAGLLSAFSLN  113 (179)
Q Consensus        34 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~d~~G~r~~~~~~~~~~~~~~~~~~~~~~  113 (179)
                      .++....+........|.+.+++|.|+++.+++.+...++..+++++.|+++||+|||+++..+.++..++.+++.++++
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~   82 (379)
T TIGR00881         3 GYAAYYLVRKNFALAMPYLVEEIGLSKTDLGLLLSSFSIAYGISKFVMGSVSDRSNPRVFLPIGLILCAIVNLFFGFSTS   82 (379)
T ss_pred             hhhHHHHhHHhhhhhhHHHHHHhCCCHhHHHHHHHHHHHHHHhhhhhhhHHHHhhCCeehhHHHHHHHHHHHHHHHHhhh
Confidence            34566777788888889999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhcCch-hhHHHHHHHhccccchhHHHHHHHHHHHHHHHHHH-HHHHHHhccC
Q 030356          114 YLSLVTLRGLVGIGLGSG-PVCLSWFLEFIPASNRGMWMVVISIFWTLGTIFEA-ALAWGNILLN  176 (179)
Q Consensus       114 ~~~~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~-~i~~~~~~~~  176 (179)
                      ++.+++.|++.|++.+.. +...+++.|++|+++|++++++.+....+|..++| .++..+.+..
T Consensus        83 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~  147 (379)
T TIGR00881        83 LWVMAALWALNGIFQGMGWPPCGRTVTKWFSRSERGTWVSFWNCSHNVGGGLLPPLVLFGIAELY  147 (379)
T ss_pred             HHHHHHHHHHHHhhccccCCchHHHHHHhcCHhhheeeEeehhccchhHHHHHHHHHHHHHHhcC
Confidence            999999999999999988 88999999999999999999999999999999999 4666555443

>KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=99.81  E-value=2e-19  Score=132.57  Aligned_cols=122  Identities=25%  Similarity=0.230  Sum_probs=112.8

Q ss_pred             hcccCCCchhHHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchh
Q 030356           53 KSEWNLSPAQETLLTSVVFAGLLVGSYSWGFISDNYGRRKGLLGIAMLASVAGLLSAFSLNYLSLVTLRGLVGIGLGSGP  132 (179)
Q Consensus        53 ~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~d~~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~~  132 (179)
                      .++.+.+..-.|.+-+.+.++..+.++.+|.++||+|||+++++++...++...+.+.++|+..+...|++.|+.-|...
T Consensus        60 ~~~~~~~~~yaGflGSsF~ilQ~~sS~~~G~~SD~yGRkpvll~c~~~va~s~ll~~~S~~F~afv~aR~l~Gi~kgnl~  139 (451)
T KOG2615|consen   60 GEPDGASVFYAGFLGSSFSILQFISSPLWGCLSDRYGRKPVLLACLIGVALSYLLWALSRNFAAFVLARFLGGIFKGNLS  139 (451)
T ss_pred             CCcccccchhhhhHhhHHHHHHHHhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCchH
Confidence            33444456678999999999999999999999999999999999999999999999999999777777999999999889


Q ss_pred             hHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 030356          133 VCLSWFLEFIPASNRGMWMVVISIFWTLGTIFEAALAWGNIL  174 (179)
Q Consensus       133 ~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~~~  174 (179)
                      +..++++|++++|+|+.+++...+++++|.++||.+++++..
T Consensus       140 v~rAiisdV~sek~r~l~ms~v~~a~~lGfilGPmIGgyla~  181 (451)
T KOG2615|consen  140 VIRAIISDVVSEKYRPLGMSLVGTAFGLGFILGPMIGGYLAQ  181 (451)
T ss_pred             HHHHHHHhhcChhhccceeeeeehhhhcchhhcchhhhHHHh
Confidence            999999999999999999999999999999999999999886

>TIGR00892 2A0113 monocarboxylate transporter 1

Probab=99.81  E-value=7.5e-19  Score=136.73  Aligned_cols=156  Identities=15%  Similarity=0.101  Sum_probs=132.6

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhcccCCCchhHHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHH
Q 030356           21 GKFQILVLIYAGLGLVAEAMEIMILSFIGPAIKSEWNLSPAQETLLTSVVFAGLLVGSYSWGFISDNYGRRKGLLGIAML  100 (179)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~d~~G~r~~~~~~~~~  100 (179)
                      ..++|.++..+.+............+...|.+.+++|.+.++.+++.+.+.++..++.++.|+++||+|||++++.+.++
T Consensus        14 ~~~~w~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~s~~~~~~~~s~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~   93 (455)
T TIGR00892        14 GGWGWVVLGATFVSIGFSYAFPKAVTVFFKELQQIFQATYSETAWISSIMLAVLYAGGPISSILVNRFGCRPVVIAGGLL   93 (455)
T ss_pred             CCcchHHHHHHHHHHHHHHhhhcchhhhHHHHHHHhCcchhHHHHHHHHHHHHHHHhhHHHHHHHHHcCchHHHHhhHHH
Confidence            34566666666666555555555567778999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHH-HHHHHHhhcCch-hhHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Q 030356          101 ASVAGLLSAFSLNYLSLVT-LRGLVGIGLGSG-PVCLSWFLEFIPASNRGMWMVVISIFWTLGTIFEAALAWGNILLNS  177 (179)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~-~~~l~G~~~g~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~~~~~~  177 (179)
                      ..++.+.++++++++.+++ .|++.|++.+.. +.....+.+++| ++|+++.++.+.+..+|..++|.+++.+.+..+
T Consensus        94 ~~~~~~~~~~~~~~~~l~~~~~~l~G~~~~~~~~~~~~~~~~~~~-~~r~~a~g~~~~~~~~g~~~~~~l~~~l~~~~g  171 (455)
T TIGR00892        94 ASLGMILASFSSNVIELYLTAGFITGLGLAFNFQPSLTMLGKYFY-RRRPLANGLAMAGSPVFLSTLAPLNQYLFESFG  171 (455)
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHH-hhHHHHHHHHHhcccHHHHHHHHHHHHHHHHhC
Confidence            9999998888888888765 468999999876 666778889986 789999999999999999999999999887654

>TIGR00885 fucP L-fucose:H+ symporter permease

Probab=99.80  E-value=3.5e-18  Score=131.39  Aligned_cols=147  Identities=17%  Similarity=0.181  Sum_probs=132.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhcchhcccCCCchhHHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHHH
Q 030356           28 LIYAGLGLVAEAMEIMILSFIGPAIKSEWNLSPAQETLLTSVVFAGLLVGSYSWGFISDNYGRRKGLLGIAMLASVAGLL  107 (179)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~d~~G~r~~~~~~~~~~~~~~~~  107 (179)
                      +..++..++..++......+..|.+++++|.|+.+.+++.+...+++.+++++.|++.||+|||+++..+.++.+++..+
T Consensus         5 ~~~~~~~f~~~G~~~~~~~~l~~~~~~~~~~s~~~~g~l~s~~~~g~~i~~~~~g~l~~r~G~r~~~~~g~~l~~~g~~l   84 (410)
T TIGR00885         5 FALITSLFALWGFANDITNPMVPQFQQAFTLTAFQAALVQSAFYGGYFIMAIPAAIFMKKLSYKAGILLGLFLYALGAFL   84 (410)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHH
Confidence            34555666777777788888899999999999999999999999999999999999999999999999999999998877


Q ss_pred             HHH---HHHHHHHHHHHHHHHhhcCch-hhHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 030356          108 SAF---SLNYLSLVTLRGLVGIGLGSG-PVCLSWFLEFIPASNRGMWMVVISIFWTLGTIFEAALAWGNIL  174 (179)
Q Consensus       108 ~~~---~~~~~~~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~~~  174 (179)
                      +..   .++++.+++.+++.|++.+.. +...+++.+..|+++|++.+++.+...++|..++|.++..+..
T Consensus        85 ~~~~~~~~~~~~~l~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~g~~i~~~l~~  155 (410)
T TIGR00885        85 FWPAAEIMNYTLFLVGLFILTAGLGFLETAANPYILVMGPESTATRRLNLAQSFNPFGSIIGMVVAQQLIL  155 (410)
T ss_pred             HHHHHhhccHHHHHHHHHHHHhhHHHHHhhhhHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            644   357888999999999999998 8889999999999999999999999999999999999998864

This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.

>PRK11043 putative transporter; Provisional

Probab=99.80  E-value=4.6e-18  Score=130.15  Aligned_cols=142  Identities=20%  Similarity=0.211  Sum_probs=125.7

Q ss_pred             HHHHHHHHHHHhhhcchhcccCCCchhHHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHH
Q 030356           36 VAEAMEIMILSFIGPAIKSEWNLSPAQETLLTSVVFAGLLVGSYSWGFISDNYGRRKGLLGIAMLASVAGLLSAFSLNYL  115 (179)
Q Consensus        36 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~d~~G~r~~~~~~~~~~~~~~~~~~~~~~~~  115 (179)
                      ...........+..|.+.+++|.++++.++..+++.++..++++++|+++||+|||+.+..+..+..++.+.+.++++++
T Consensus        16 ~~~~~~~~~~~p~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~   95 (401)
T PRK11043         16 MLGFLATDMYLPAFKAIQADLQTSASAVSASLSLFLAGFALGQLLWGPLSDRYGRKPVLLAGLSLFALGSLGMLWVESAA   95 (401)
T ss_pred             HHHHHHHHHHHhhHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHhhhhHHhhcCCcHHHHHHHHHHHHHHHHHHHhcCHH
Confidence            33444445555666778899999999999999999999999999999999999999999999999999888888899999


Q ss_pred             HHHHHHHHHHhhcCch-hhHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Q 030356          116 SLVTLRGLVGIGLGSG-PVCLSWFLEFIPASNRGMWMVVISIFWTLGTIFEAALAWGNILLNS  177 (179)
Q Consensus       116 ~~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~~~~~~  177 (179)
                      .+++.|++.|++.+.. +...+.+.|++|++++++..+..+....++..++|.+++++.+..+
T Consensus        96 ~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g  158 (401)
T PRK11043         96 QLLVLRFVQAVGVCSAAVIWQALVIDRYPAQKANRVFATIMPLVALSPALAPLLGAWLLNHFG  158 (401)
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence            9999999999998877 7677889999999999999999988999999999999999887654

>PRK10054 putative transporter; Provisional

Probab=99.80  E-value=6.6e-18  Score=129.29  Aligned_cols=140  Identities=11%  Similarity=0.124  Sum_probs=121.1

Q ss_pred             HHHHHHHHHHHH-hhhcchhcccCCCchhHHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHHHHHHHHH
Q 030356           35 LVAEAMEIMILS-FIGPAIKSEWNLSPAQETLLTSVVFAGLLVGSYSWGFISDNYGRRKGLLGIAMLASVAGLLSAFSLN  113 (179)
Q Consensus        35 ~~~~~~~~~~~~-~~~~~~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~d~~G~r~~~~~~~~~~~~~~~~~~~~~~  113 (179)
                      .++......... ...+++.+++|.|+.+.+++.+...++..+++++.|+++||+|||++++.+.+...++.+...+.++
T Consensus        16 ~~~~~~g~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~k~~~~~~~~~~~~~~~~~~~~~~   95 (395)
T PRK10054         16 SLLLTIGRGATLPFMTIYLSRQYSLSVDLIGYAMTIALTIGVVFSLGFGILADKFDKKRYMLLAITAFASGFIAIPLVNN   95 (395)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHHhH
Confidence            344444444444 4445667789999999999999999999999999999999999999999999988888888889999


Q ss_pred             HHHHHHHHHHHHhhcCch-hhHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 030356          114 YLSLVTLRGLVGIGLGSG-PVCLSWFLEFIPASNRGMWMVVISIFWTLGTIFEAALAWGNIL  174 (179)
Q Consensus       114 ~~~~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~~~  174 (179)
                      ++.+++.+.+.|.+.+.. +....+..|..|+++|+++.++.+....+|..++|.+++++.+
T Consensus        96 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~lg~~igp~l~~~l~~  157 (395)
T PRK10054         96 VTLVVLFFALINCAYSVFSTVLKAWFADNLSSTSKTKIFSLNYTMLNIGWTVGPPLGTLLVM  157 (395)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            988888888888877766 7788999999999999999999999999999999999998875

>PRK09874 drug efflux system protein MdtG; Provisional

Probab=99.79  E-value=1e-17  Score=128.30  Aligned_cols=148  Identities=19%  Similarity=0.168  Sum_probs=126.7

Q ss_pred             HHHHHHHHHHHHHHHHHhhhcchhcccCCCchh-----HHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHH
Q 030356           30 YAGLGLVAEAMEIMILSFIGPAIKSEWNLSPAQ-----ETLLTSVVFAGLLVGSYSWGFISDNYGRRKGLLGIAMLASVA  104 (179)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~-----~~~~~~~~~~~~~i~~~~~g~l~d~~G~r~~~~~~~~~~~~~  104 (179)
                      .+.++.++.........+..|.+.+++|.+..+     .+++.++..++..+++++.|+++||+|||+++..+.+..++.
T Consensus        18 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~   97 (408)
T PRK09874         18 VAWLGCFLTGAAFSLVMPFLPLYVEQLGVTGHSALNMWSGLVFSITFLFSAIASPFWGGLADRKGRKIMLLRSALGMGIV   97 (408)
T ss_pred             HHHHHHHHHHHHHHHhhhhHHHHHHHhCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhCcHHHHHHHHHHHHHH
Confidence            334455566666667777888888899888655     488999999999999999999999999999999999998888


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhcCchhhHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Q 030356          105 GLLSAFSLNYLSLVTLRGLVGIGLGSGPVCLSWFLEFIPASNRGMWMVVISIFWTLGTIFEAALAWGNILLNS  177 (179)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~~~~~~  177 (179)
                      ..++.+.++++.+++.|++.|++.+..+.....+.|.+|+++|++++++++....+|..++|.+++.+.+..+
T Consensus        98 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~  170 (408)
T PRK09874         98 MVLMGLAQNIWQFLILRALLGLLGGFVPNANALIATQVPRNKSGWALGTLSTGGVSGALLGPLAGGLLADSYG  170 (408)
T ss_pred             HHHHHHHhhHHHHHHHHHHHHHhhhhHHhHHHHHHHhcCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            8888888999999999999999765446677888999999999999999999999999999999999876543

>PRK11102 bicyclomycin/multidrug efflux system; Provisional

Probab=99.79  E-value=3.3e-18  Score=129.81  Aligned_cols=135  Identities=17%  Similarity=0.290  Sum_probs=124.8

Q ss_pred             HHHHhhhcchhcccCCCchhHHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030356           43 MILSFIGPAIKSEWNLSPAQETLLTSVVFAGLLVGSYSWGFISDNYGRRKGLLGIAMLASVAGLLSAFSLNYLSLVTLRG  122 (179)
Q Consensus        43 ~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~d~~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  122 (179)
                      ....+..|.+.+++|.|+++.+++.+.+.++..++.++.|+++||+|||+++..+.++.+++...+.+.++++.+++.|+
T Consensus         8 ~~~~p~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~   87 (377)
T PRK11102          8 DMYLPALPVIAADFGVSAGSVQMTLSAYILGFAIGQLFYGPMADSFGRKPVILGGTLVFALAAVACALAQTIDQLIYMRF   87 (377)
T ss_pred             HHHhccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhchHHhhcCChHHHHHHHHHHHHHHHHHHHHccHHHHHHHHH
Confidence            44456678888999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhcCch-hhHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Q 030356          123 LVGIGLGSG-PVCLSWFLEFIPASNRGMWMVVISIFWTLGTIFEAALAWGNILLNS  177 (179)
Q Consensus       123 l~G~~~g~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~~~~~~  177 (179)
                      +.|++.+.. +...+++.|++|+++|++++++.+....+|..++|.+++.+.+..+
T Consensus        88 l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~  143 (377)
T PRK11102         88 LHGLAAAAASVVINALMRDMFPKEEFSRMMSFVTLVMTIAPLLAPIIGGWLLVWFS  143 (377)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            999999888 8888999999999999999999999999999999999998887543

>PRK10207 dipeptide/tripeptide permease B; Provisional

Probab=99.78  E-value=7.2e-18  Score=132.12  Aligned_cols=142  Identities=13%  Similarity=0.088  Sum_probs=121.2

Q ss_pred             HHHHHHHH-HHHhhhcchhcccCCCchhHHHHHHHHHHHHHHHHHHHhhhhcc-ccchhHHHHHHHHHHHHHHHHHHHHH
Q 030356           36 VAEAMEIM-ILSFIGPAIKSEWNLSPAQETLLTSVVFAGLLVGSYSWGFISDN-YGRRKGLLGIAMLASVAGLLSAFSLN  113 (179)
Q Consensus        36 ~~~~~~~~-~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~d~-~G~r~~~~~~~~~~~~~~~~~~~~~~  113 (179)
                      +...+.++ .......++.+++|.++++..++.+.+.....+..++.|+++|| +|||++++.+.++..++.+.+.++++
T Consensus        24 ~~er~~~y~~~~~l~~yl~~~lg~~~~~a~~i~~~~~~~~~~~~~~~G~laDr~~G~r~~~~~g~~~~~~g~~~~~~~~~  103 (489)
T PRK10207         24 LWERFGYYGVQGILAVFFVKQLGFSQEQAFITFGAFAALVYGLISIGGYVGDHLLGTKRTIVLGAIVLAIGYFMTGMSLL  103 (489)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhHHHhhhhccchHHHHHHHHHHHHHHHHHHHHhcc
Confidence            33444444 44455566778899999999999999998999999999999999 99999999999999999999888765


Q ss_pred             HH-HHHHHHHHHHhhcCch-hhHHHHHHHhcccc--chhHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Q 030356          114 YL-SLVTLRGLVGIGLGSG-PVCLSWFLEFIPAS--NRGMWMVVISIFWTLGTIFEAALAWGNILLNS  177 (179)
Q Consensus       114 ~~-~~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~--~r~~~~~~~~~~~~~g~~~~~~i~~~~~~~~~  177 (179)
                      .. .+++.+.++|++.|.. +...+++.|.+|++  +|+++.+++..+.++|..++|.+++++.+..|
T Consensus       104 ~~~ll~~~~~l~~ig~g~~~~~~~~li~~~~p~~~~~~~~~~~~~~~~~nig~~~g~~l~g~l~~~~g  171 (489)
T PRK10207        104 KPDLIFIALGTIAVGNGLFKANPASLLSKCYPPKDPRLDGAFTLFYMSINIGSLISLSLAPVIADKFG  171 (489)
T ss_pred             chhHHHHHHHHHHhccccccCCHHHHHHHhcCCCchhhhcchhHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence            33 3557899999999998 88899999999987  45789999999999999999999999988765

>TIGR00897 2A0118 polyol permease family

Probab=99.78  E-value=1.1e-17  Score=128.31  Aligned_cols=130  Identities=15%  Similarity=0.132  Sum_probs=111.5

Q ss_pred             hhcchhcccCCCchhHHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHHHHH---H-HHHHHHHHHHHHH
Q 030356           48 IGPAIKSEWNLSPAQETLLTSVVFAGLLVGSYSWGFISDNYGRRKGLLGIAMLASVAGLLSA---F-SLNYLSLVTLRGL  123 (179)
Q Consensus        48 ~~~~~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~d~~G~r~~~~~~~~~~~~~~~~~~---~-~~~~~~~~~~~~l  123 (179)
                      ..+.+.+|+|.|+++.+++.+.+.++..+++++.|++.||+|||+++..+..+.+++.+.+.   . .+++..+++.|++
T Consensus        35 ~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~dr~g~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i  114 (402)
T TIGR00897        35 WLSPFLKALGLSPQQSASAFTLYGIAAAISAWISGVVAEIIGPLKTMMIGLLLWCVGHAAFIVFGLGHANYPLILLFYGI  114 (402)
T ss_pred             hHHHHHHHhCCCHHHhHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHhccCccHHHHHHHHHH
Confidence            34556688999999999999999999999999999999999999999999988888766542   2 2467788889999


Q ss_pred             HHhhcCch-hhHHHHHHHhccccchhHHHHHHHHHHHHHH-HHHHHHHHHHhccCC
Q 030356          124 VGIGLGSG-PVCLSWFLEFIPASNRGMWMVVISIFWTLGT-IFEAALAWGNILLNS  177 (179)
Q Consensus       124 ~G~~~g~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~-~~~~~i~~~~~~~~~  177 (179)
                      .|++.+.. +.....+.+++|+++|++++++++....+|. .++|.+++++.+..+
T Consensus       115 ~G~g~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~g~~~~~~l~~~~g  170 (402)
T TIGR00897       115 RGLGYPLFAYSFLVWVVYNTKQDNLSSAVGWFWAVYSIGIGVFGSYYSSYAIPAFG  170 (402)
T ss_pred             HHcchHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc
Confidence            99988776 6677888899999999999999999999996 578999888876544

This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.

>TIGR00805 oat sodium-independent organic anion transporter

Probab=99.77  E-value=1.3e-18  Score=139.80  Aligned_cols=148  Identities=14%  Similarity=0.145  Sum_probs=132.3

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhcchhcccCCCchhHHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHHHH
Q 030356           29 IYAGLGLVAEAMEIMILSFIGPAIKSEWNLSPAQETLLTSVVFAGLLVGSYSWGFISDNYGRRKGLLGIAMLASVAGLLS  108 (179)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~d~~G~r~~~~~~~~~~~~~~~~~  108 (179)
                      +...+..+............++.+.++++++.++.|++.+.+.++++++.++.+++.||+|||+.+.++.++++++.+++
T Consensus        36 ~~~~~~~~~~~~~~g~~~~~l~~iek~F~lss~~~G~i~s~~~i~~~~~~i~v~~~~~r~~r~~~i~~g~ll~~lg~ll~  115 (633)
T TIGR00805        36 LLLTCAQLQGLLYNGLVNSSLTTIERRFKLSTSSSGLINGSYEIGNLLLIIFVSYFGTKLHRPIVIGIGCAIMGLGSFLL  115 (633)
T ss_pred             HHHHHHHHHHHHHHHHHHhhchhhhhhhCCCCCcceeeeehhhHHHHHHHHHHHHhhcccCcceEEEecHHHHHHHHHHH
Confidence            44445566666777788888899999999999999999999999999999999999999999999999999999999888


Q ss_pred             HHHH---------------------------------------------------HHHHHHHHHHHHHhhcCch-hhHHH
Q 030356          109 AFSL---------------------------------------------------NYLSLVTLRGLVGIGLGSG-PVCLS  136 (179)
Q Consensus       109 ~~~~---------------------------------------------------~~~~~~~~~~l~G~~~g~~-~~~~~  136 (179)
                      ++.+                                                   .+..+++.|+++|++.+.. +...+
T Consensus       116 alphf~~~~y~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~~~~~~~  195 (633)
T TIGR00805       116 SLPHFLSGRYSYSTTVSSTGNLSSANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGATPIFPLGIS  195 (633)
T ss_pred             hChHHhcCCccccccccccccccccccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCCcchhcCch
Confidence            7653                                                   2445678999999999998 88999


Q ss_pred             HHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHHHhccC
Q 030356          137 WFLEFIPASNRGMWMVVISIFWTLGTIFEAALAWGNILLN  176 (179)
Q Consensus       137 ~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~~~~~  176 (179)
                      ++.|++|+++|+.+.++++....+|..+++++++++.+.+
T Consensus       196 ~i~d~~~~~~~~~~~~i~~~~~~iG~~lG~llgg~l~~~~  235 (633)
T TIGR00805       196 YIDDFAKSKNSPLYIGILESIAVFGPAFGYLLGSFCLQIY  235 (633)
T ss_pred             hhhccCCccccHHHHHHHHHHHHhhhHHHHHHHHHHHhcc
Confidence            9999999999999999999999999999999999988654

Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.

>PRK11646 multidrug resistance protein MdtH; Provisional

Probab=99.77  E-value=2.8e-17  Score=126.05  Aligned_cols=130  Identities=13%  Similarity=0.063  Sum_probs=119.6

Q ss_pred             HHhhhcchhcccCCCchhHHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030356           45 LSFIGPAIKSEWNLSPAQETLLTSVVFAGLLVGSYSWGFISDNYGRRKGLLGIAMLASVAGLLSAFSLNYLSLVTLRGLV  124 (179)
Q Consensus        45 ~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~d~~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  124 (179)
                      .+...+++.+++|.|+.+.++..+...+...+.+++.|+++||+|||+++..+..+.++..+.+.+.++.+.+++.|++.
T Consensus        30 ~~~~~~~~~~~~g~s~~~~gl~~~~~~l~~~~~~~~~G~l~dr~g~k~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~  109 (400)
T PRK11646         30 FPLISIRFVDQLGWAAVMVGIALGLRQFIQQGLGIFGGAIADRFGAKPMIVTGMLMRAAGFATMAIAHEPWLLWLSCILS  109 (400)
T ss_pred             HHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHhhhhHHHHHhCchHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence            34444567788999999999999999999999999999999999999999999999999999998889999999999999


Q ss_pred             HhhcCch-hhHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 030356          125 GIGLGSG-PVCLSWFLEFIPASNRGMWMVVISIFWTLGTIFEAALAWGNIL  174 (179)
Q Consensus       125 G~~~g~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~~~  174 (179)
                      |++.+.. +...+++.|++|+|+|++++++......+|..++|.+++++.+
T Consensus       110 g~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~g~l~~  160 (400)
T PRK11646        110 GLGGTLFDPPRTALVIKLIRPHQRGRFFSLLMMQDSAGAVIGALLGSWLLQ  160 (400)
T ss_pred             HHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9998877 7888999999999999999999999999999999999999873

>TIGR00898 2A0119 cation transport protein

Probab=99.77  E-value=6.3e-18  Score=133.02  Aligned_cols=127  Identities=33%  Similarity=0.611  Sum_probs=118.9

Q ss_pred             hhhcchhcccCCC---chhHHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030356           47 FIGPAIKSEWNLS---PAQETLLTSVVFAGLLVGSYSWGFISDNYGRRKGLLGIAMLASVAGLLSAFSLNYLSLVTLRGL  123 (179)
Q Consensus        47 ~~~~~~~~~~~~s---~~~~~~~~~~~~~~~~i~~~~~g~l~d~~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  123 (179)
                      ...|.+.+|+|++   +.+.++..+++.++..+++++.|+++||+|||++++.+.++..++.++.+++++++.+++.|++
T Consensus       110 ~~~~~i~~e~~l~c~~~~~~~~~~s~~~~g~~~g~~~~g~l~Dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~r~l  189 (505)
T TIGR00898       110 TFSSTIVTEWDLVCEDAWKVDLTQSCFFVGVLLGSFVFGYLSDRFGRKKVLLLSTLVTAVSGVLTAFSPNYTVFLVFRLL  189 (505)
T ss_pred             cccccEEEEecceechHHHHHHHHHHHHHHHHHHHHhHHHhhhhccchHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence            4557889999998   8899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhcCch-hhHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 030356          124 VGIGLGSG-PVCLSWFLEFIPASNRGMWMVVISIFWTLGTIFEAALAWGNI  173 (179)
Q Consensus       124 ~G~~~g~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~~  173 (179)
                      .|++.+.. +....++.|++|+++|+++.+++..+..+|..++|.++..+.
T Consensus       190 ~G~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~  240 (505)
T TIGR00898       190 VGMGIGGIWVQAVVLNTEFLPKKQRAIVGTLIQVFFSLGLVLLPLVAYFIP  240 (505)
T ss_pred             HHhhccchHHHHHHHhheecChhhhHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            99999998 889999999999999999999999999999999999887654

>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial

Probab=99.77  E-value=2.3e-17  Score=129.04  Aligned_cols=145  Identities=12%  Similarity=0.028  Sum_probs=125.2

Q ss_pred             HHHHHHHHHHHHHHhhhcch-hcc--cCCCchhHHHHHHHHHHHHHHHHHHHhhhhcc-ccchhHHHHHHHHHHHHHHHH
Q 030356           33 LGLVAEAMEIMILSFIGPAI-KSE--WNLSPAQETLLTSVVFAGLLVGSYSWGFISDN-YGRRKGLLGIAMLASVAGLLS  108 (179)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~~-~~~--~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~d~-~G~r~~~~~~~~~~~~~~~~~  108 (179)
                      ...+.....++.....+|.+ .++  +|.++.+.+++.+.+.++..+++++.|+++|| +|||+++..+.++.+++.+++
T Consensus        17 ~~~~~~~~~~~~~~~~L~~yl~~~~~lg~s~~~ag~~~~~~~~~~~~~~~~~G~laDr~~G~~~~l~~~~~~~~~g~~~~   96 (475)
T TIGR00924        17 FVELWERFSYYGMQGILAVYLVQQAGLGFSQEQAFIIFGAYSALVYLLTSVGWWFGDRVWGTKKTMVLGGIVLMLGHFML   96 (475)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcchHHHHHHHHHHHHHHHHHH
Confidence            34455555555545555544 455  89999999999999999999999999999999 899999999999999999998


Q ss_pred             HHHHHHHHHHHHHHHHHhhcCch-hhHHHHHHHhccccc---hhHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Q 030356          109 AFSLNYLSLVTLRGLVGIGLGSG-PVCLSWFLEFIPASN---RGMWMVVISIFWTLGTIFEAALAWGNILLNS  177 (179)
Q Consensus       109 ~~~~~~~~~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~---r~~~~~~~~~~~~~g~~~~~~i~~~~~~~~~  177 (179)
                      +++++...+.+.+++.|++.|.. +...++++|++|+++   |+++.++++...++|..++|.+++++.+..+
T Consensus        97 ~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~niG~~ig~~l~g~l~~~~g  169 (475)
T TIGR00924        97 AMSIYPDLIFYGLGTIAVGSGLFKANPSSMVGKLYERGDMPRRDGGFTLFYMSINIGSFISPLLAGVIAENYG  169 (475)
T ss_pred             HhcccHhHHHHHHHHHHhccccccCCHHHHHHHhcCCCCcccccceehhHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            88888888888999999999988 888999999998764   8889999999999999999999999987644

The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.

>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]

Probab=99.75  E-value=1.8e-17  Score=123.93  Aligned_cols=153  Identities=22%  Similarity=0.235  Sum_probs=131.3

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhcccCCCchhHHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHH
Q 030356           22 KFQILVLIYAGLGLVAEAMEIMILSFIGPAIKSEWNLSPAQETLLTSVVFAGLLVGSYSWGFISDNYGRRKGLLGIAMLA  101 (179)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~d~~G~r~~~~~~~~~~  101 (179)
                      +.+.+.+....+.+.........++.+.+.+.+|+|+|++|.+++.++..+...+.+++.|.+.||+|.|++...+.++.
T Consensus        10 ~~~~~~L~~S~~af~v~F~VW~l~s~l~~~i~~~~~LS~~q~~ll~aiPil~GallRl~~g~l~drfGgR~~~~~s~~l~   89 (417)
T COG2223          10 RIARRNLWLSTLAFDVGFMVWTLFSPLGVFIKSDFGLSEGQKGLLVAIPILVGALLRLPYGFLTDRFGGRKWTILSMLLL   89 (417)
T ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCHHHHHHHHHHHHHHhHHHHHHHHhhhcccCchHHHHHHHHHH
Confidence            34445566666667777777888888889999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHH---HHHHHHHHHHHHHhhcCchhhHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 030356          102 SVAGLLSAFSL---NYLSLVTLRGLVGIGLGSGPVCLSWFLEFIPASNRGMWMVVISIFWTLGTIFEAALAWGNILL  175 (179)
Q Consensus       102 ~~~~~~~~~~~---~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~~~~  175 (179)
                      .+-++..+++.   +++.+++.+++.|++.+...+..+.++++||||++|.+++++. ..++|..+...++-.++..
T Consensus        90 ~IP~~~~~~a~~~~~~~~ll~~gll~G~~GasFav~m~~~s~~fP~~~qG~AlGI~g-~GN~G~av~q~~~P~v~~~  165 (417)
T COG2223          90 LIPCLGLAFAVTYPSTWQLLVIGLLLGLAGASFAVGMPNASFFFPKEKQGLALGIAG-AGNLGVAVAQLVAPLVAVA  165 (417)
T ss_pred             HHHHHHHHHHccCCchHHHHHHHHHHhcccceehcccccccccCChhhhhHHHHHhc-cccccHHHHHHHHHHHHHH
Confidence            99998888765   4459999999999998877888999999999999999999998 7777776666665555443

>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

Probab=99.74  E-value=1.6e-16  Score=121.82  Aligned_cols=134  Identities=20%  Similarity=0.114  Sum_probs=113.9

Q ss_pred             HHHhhhcchhcccCCCchhHHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030356           44 ILSFIGPAIKSEWNLSPAQETLLTSVVFAGLLVGSYSWGFISDNYGRRKGLLGIAMLASVAGLLSAFSLNYLSLVTLRGL  123 (179)
Q Consensus        44 ~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~d~~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  123 (179)
                      ......|.+.++.|.++.+.+...+...++..+++++.|++.||+|||+.+..+.....++.+.....++...+.+..++
T Consensus       238 ~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  317 (406)
T PRK11551        238 FLLNWLPSLLVGQGLSRSQAGLVQIAFNIGGALGSLLIGALMDRLRPRRVVLLIYAGILASLAALAAAPSFAGMLLAGFA  317 (406)
T ss_pred             HHHHHHHHHHHhCCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence            33444577777889999999999999999999999999999999999999888776666666666666666666777788


Q ss_pred             HHhhcCch-hhHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Q 030356          124 VGIGLGSG-PVCLSWFLEFIPASNRGMWMVVISIFWTLGTIFEAALAWGNILLNS  177 (179)
Q Consensus       124 ~G~~~g~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~~~~~~  177 (179)
                      .|++.+.. +...++..|.+|+++|+++.++.+....+|..++|.+++++.+..+
T Consensus       318 ~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~~~  372 (406)
T PRK11551        318 AGLFVVGGQSVLYALAPLFYPTQVRGTGVGAAVAVGRLGSMAGPLLAGQLLALGR  372 (406)
T ss_pred             HHHHHHhHHHHHHHHHHHHcchhhhhhhhhHHHHhhhHHHHHHhhhHhhhhccCC
Confidence            88877766 7788899999999999999999999999999999999999988654

>PTZ00207 hypothetical protein; Provisional

Probab=99.73  E-value=1.8e-16  Score=125.61  Aligned_cols=149  Identities=19%  Similarity=0.209  Sum_probs=118.7

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhcccCCCchhHHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHH
Q 030356           22 KFQILVLIYAGLGLVAEAMEIMILSFIGPAIKSEWNLSPAQETLLTSVVFAGLLVGSYSWGFISDNYGRRKGLLGIAMLA  101 (179)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~d~~G~r~~~~~~~~~~  101 (179)
                      .++|..+........+.+ ..+.++...+.+.+++|+|.++.+++.++. ......+++.|++.||+|+|+++.++.++.
T Consensus        24 ~~Rw~~lva~~~~~~~~g-~~y~fsv~s~~L~~~lgls~~~l~~i~svg-~~~g~~~lp~G~L~Dr~G~R~vllig~ll~  101 (591)
T PTZ00207         24 PRRFALLVLGAFCSICTS-FMYAFNLISGAMQARYNLTQRDLSTITTVG-IAVGYFLLPYSFIYDYLGPRPIFVLSMTVF  101 (591)
T ss_pred             cchHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhCcCHHHHHHHHHHH-HHHHHHHHHHHHHHHHhCcHHHHHHHHHHH
Confidence            345554444443333333 334556677889999999999999988773 445567888999999999999999999999


Q ss_pred             HHHHHHHHHH------HHHHHHHHHHHHHHhhcCch-hhHHHHHHHhccccchhHHHHHHHHHHHHHHHH-HHHHHHHHh
Q 030356          102 SVAGLLSAFS------LNYLSLVTLRGLVGIGLGSG-PVCLSWFLEFIPASNRGMWMVVISIFWTLGTIF-EAALAWGNI  173 (179)
Q Consensus       102 ~~~~~~~~~~------~~~~~~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~-~~~i~~~~~  173 (179)
                      .++.++++++      ++++.+++.|++.|++.+.. +.....+.+++| ++||++.++.....++|+.+ +++..+++.
T Consensus       102 ~iG~ll~ala~~~~i~~s~~~l~l~r~l~G~G~~~~~~~~~~~i~~~Fp-~~RG~a~Gi~~~~~gLGsaI~~~l~~~l~~  180 (591)
T PTZ00207        102 CLGTLLFALTFQEVIEGSVVRLSVYNGLMTLGCMLFDLGAVVTVLSVFP-SNRGAVVAIMKTFTGLGSAILGSIQLAFFS  180 (591)
T ss_pred             HHHHHHHHHHhcccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999887      58899999999999999887 777888899997 78999999999999999975 555555543

>TIGR00896 CynX cyanate transporter

Probab=99.73  E-value=2.7e-17  Score=124.02  Aligned_cols=132  Identities=17%  Similarity=0.137  Sum_probs=117.0

Q ss_pred             HHHHhhhcchhcccCCCchhHHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030356           43 MILSFIGPAIKSEWNLSPAQETLLTSVVFAGLLVGSYSWGFISDNYGRRKGLLGIAMLASVAGLLSAFSLNYLSLVTLRG  122 (179)
Q Consensus        43 ~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~d~~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  122 (179)
                      ....+..|.+.+|+|.|+++.++..+.+.++..+++++.|+++||+|||+++..+.+...++.+.. ..++...+++.|+
T Consensus        17 ~~~~~~lp~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~   95 (355)
T TIGR00896        17 TSVGPLLPQIRSALGMSFSVAGLLTALPVLCFAVLAPLAPWLARRFGEERSVAAGLLLIAAGILIR-SAPGTALLFAGTA   95 (355)
T ss_pred             ccCcccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCchHHHHHHHHHHHHHHHHH-HhccHHHHHHHHH
Confidence            345677789999999999999999999999999999999999999999999999988887777766 6778888889999


Q ss_pred             HHHhhcCch-hhHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHHHhccC
Q 030356          123 LVGIGLGSG-PVCLSWFLEFIPASNRGMWMVVISIFWTLGTIFEAALAWGNILLN  176 (179)
Q Consensus       123 l~G~~~g~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~~~~~  176 (179)
                      +.|++.+.. +.....+.|.+| ++|++++++++....+|..+++.+++.+.+..
T Consensus        96 ~~g~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~i~~~~~~~l~~~~  149 (355)
T TIGR00896        96 LIGVGIAIINVLLPSLIKRDFP-QRVGLMTGLYSMALMGGAALAAAATVPLAQHS  149 (355)
T ss_pred             HHHHHHHHHhccchHHHHHhCc-chhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            999999887 667778888886 68999999999999999999999988887654

This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.

>TIGR00890 2A0111 Oxalate/Formate Antiporter

Probab=99.73  E-value=1.5e-16  Score=119.99  Aligned_cols=130  Identities=16%  Similarity=0.051  Sum_probs=109.9

Q ss_pred             hhcchhcccCCCchhHHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHH
Q 030356           48 IGPAIKSEWNLSPAQETLLTSVVFAGLLVGSYSWGFISDNYGRRKGLLGIAMLASVAGLLSAFSLNY--LSLVTLRGLVG  125 (179)
Q Consensus        48 ~~~~~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~d~~G~r~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~G  125 (179)
                      ..+.+.++++.++++.+...+...++..+++++.|++.||+|||+.+..+.....++.+...+.++.  ..+....++.|
T Consensus       227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  306 (377)
T TIGR00890       227 LYKPYGQSLGLSDGFLVLAVSISSIFNGGGRPFLGALSDKIGRQKTMSIVFGISAVGMAAMLFIPMLNDVLFLATVALVF  306 (377)
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHcccchhHHHHHHHHHHH
Confidence            3445567788898899999999999999999999999999999999998888888887776665532  23445567788


Q ss_pred             hhcCch-hhHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Q 030356          126 IGLGSG-PVCLSWFLEFIPASNRGMWMVVISIFWTLGTIFEAALAWGNILLNS  177 (179)
Q Consensus       126 ~~~g~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~~~~~~  177 (179)
                      ++.+.. +..+.++.|.+|+++|+++.++++....+|..++|.+.+.+.+..+
T Consensus       307 ~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g  359 (377)
T TIGR00890       307 FTWGGTISLFPSLVSDIFGPANSAANYGFLYTAKAVAGIFGGLIASHALTEIG  359 (377)
T ss_pred             HHhccchhccHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence            888777 7778889999999999999999999999999999999999987654

>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]

Probab=99.73  E-value=8.6e-17  Score=126.96  Aligned_cols=112  Identities=29%  Similarity=0.504  Sum_probs=104.5

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCch-hhHHHHHH
Q 030356           61 AQETLLTSVVFAGLLVGSYSWGFISDNYGRRKGLLGIAMLASVAGLLSAFSLNYLSLVTLRGLVGIGLGSG-PVCLSWFL  139 (179)
Q Consensus        61 ~~~~~~~~~~~~~~~i~~~~~g~l~d~~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~-~~~~~~~~  139 (179)
                      ++.+++.+...++..+++++.|+++|++|||+.++++.+...++.+++++++|...++++|++.|+|.|.. ...+.+++
T Consensus        89 ~~~s~~~s~~~lga~~g~l~~g~l~d~~GRk~~l~~~~~~~~iG~ii~~~a~~~~~l~~GR~l~G~g~G~~~~~~piy~s  168 (513)
T KOG0254|consen   89 VRQGLLTSILNLGALVGSLLAGRLGDRIGRKKTLLLAVVLFLIGAIIIALAPSWYQLIVGRILTGLGVGGASVLAPVYIS  168 (513)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhccchhhhhhcchhhHh
Confidence            35589999999999999999999999999999999999999999999999999999999999999999999 88999999


Q ss_pred             HhccccchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 030356          140 EFIPASNRGMWMVVISIFWTLGTIFEAALAWGN  172 (179)
Q Consensus       140 ~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~  172 (179)
                      |..|++.||...+..+....+|..++..++...
T Consensus       169 Eiap~~~RG~l~~~~~l~~~~Gi~~~~~~~~~~  201 (513)
T KOG0254|consen  169 EIAPAHIRGTLVSLYQLFITIGILLGYCINYGT  201 (513)
T ss_pred             hcCChhhhHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence            999999999999999999999988885544443

>PRK10489 enterobactin exporter EntS; Provisional

Probab=99.72  E-value=4.1e-17  Score=125.62  Aligned_cols=140  Identities=17%  Similarity=0.090  Sum_probs=118.8

Q ss_pred             HHHHHHHHHHhhhcchhcccCCCchhHHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHHHHHH-----H
Q 030356           37 AEAMEIMILSFIGPAIKSEWNLSPAQETLLTSVVFAGLLVGSYSWGFISDNYGRRKGLLGIAMLASVAGLLSAF-----S  111 (179)
Q Consensus        37 ~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~d~~G~r~~~~~~~~~~~~~~~~~~~-----~  111 (179)
                      .............|.+.++++.++.+.+++.+...++..+++++.|+++||+|||+++..+..+.+++......     .
T Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~l~~~~~~~~~G~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~~  107 (417)
T PRK10489         28 ISIFGLGLLGVAVPVQIQMMTGSTLQVGLSVTLTGGAMFIGLMVGGVLADRYDRKKLILLARGTCGLGFIGLALNAFLPE  107 (417)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHhhhcCCceEEEehHHHHHHHHHHHHHHHHcCC
Confidence            34444455566678888888889999999999999999999999999999999999998887776666554432     4


Q ss_pred             HHHHHHHHHHHHHHhhcCch-hhHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHHHhccC
Q 030356          112 LNYLSLVTLRGLVGIGLGSG-PVCLSWFLEFIPASNRGMWMVVISIFWTLGTIFEAALAWGNILLN  176 (179)
Q Consensus       112 ~~~~~~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~~~~~  176 (179)
                      ++++.+++.|++.|++.+.. +...+.+.|+.|+++|+++.++.+....+|..++|.+++.+.+..
T Consensus       108 ~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~g~l~~~~  173 (417)
T PRK10489        108 PSLLAIYLLGLWDGFFGSLGVTALLAATPALVGRENLMQAGAITMLTVRLGSVISPALGGLLIAAG  173 (417)
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHH
Confidence            56788888999999988877 778889999999999999999999999999999999999887653

>PRK09584 tppB putative tripeptide transporter permease; Reviewed

Probab=99.72  E-value=6.6e-16  Score=121.54  Aligned_cols=142  Identities=13%  Similarity=0.024  Sum_probs=114.5

Q ss_pred             HHHHHHHHHH-HhhhcchhcccCCCchhHHHHHHHHHHHHHHHHHHHhhhhcc-ccchhHHHHHHHHHHHHHHHHHHHH-
Q 030356           36 VAEAMEIMIL-SFIGPAIKSEWNLSPAQETLLTSVVFAGLLVGSYSWGFISDN-YGRRKGLLGIAMLASVAGLLSAFSL-  112 (179)
Q Consensus        36 ~~~~~~~~~~-~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~d~-~G~r~~~~~~~~~~~~~~~~~~~~~-  112 (179)
                      +.....++.. .....++.+++|.++++.+++.+.+........++.|+++|| +|||+.+..+.++.+++..++++++ 
T Consensus        31 ~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~~G~LaDr~~G~r~~~~~g~~~~~ig~~l~~~~~~  110 (500)
T PRK09584         31 LWERFGYYGLQGIMAVYLVKQLGMSEADSITLFSSFSALVYGLVAIGGWLGDKVLGTKRVIMLGAIVLAIGYALVAWSGH  110 (500)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhcc
Confidence            3344444333 344455668899999999888888776666677899999999 5999999999999999988887764 


Q ss_pred             HHHHHHHHHHHHHhhcCch-hhHHHHHHHhccccc--hhHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Q 030356          113 NYLSLVTLRGLVGIGLGSG-PVCLSWFLEFIPASN--RGMWMVVISIFWTLGTIFEAALAWGNILLNS  177 (179)
Q Consensus       113 ~~~~~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~--r~~~~~~~~~~~~~g~~~~~~i~~~~~~~~~  177 (179)
                      +...+.+.+++.|++.|.. +...+++.|++|+++  |..+.++++.+.++|..++|.+++++.+..|
T Consensus       111 ~~~~l~~~~~l~gig~g~~~~~~~~l~~~~f~~~~~~~~~~~~~~~~~~~iG~~~gp~i~g~l~~~~g  178 (500)
T PRK09584        111 DAGIVYMGMATIAVGNGLFKANPSSLLSTCYEKDDPRLDGAFTMYYMSINIGSFFSMLATPWLAAKYG  178 (500)
T ss_pred             cHHHHHHHHHHHHHhhhcccCCHHHHHHHhcCCCchhhhhcchHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence            4556677889999999988 888899999998654  4567888999999999999999999988654

>TIGR00900 2A0121 H+ Antiporter protein

Probab=99.71  E-value=7.5e-16  Score=115.85  Aligned_cols=131  Identities=15%  Similarity=0.091  Sum_probs=115.5

Q ss_pred             hhhcchhcc-cCCCchhHHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
Q 030356           47 FIGPAIKSE-WNLSPAQETLLTSVVFAGLLVGSYSWGFISDNYGRRKGLLGIAMLASVAGLLSAFSLN-YLSLVTLRGLV  124 (179)
Q Consensus        47 ~~~~~~~~~-~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~d~~G~r~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~  124 (179)
                      ...|.+.++ +|.++.+.+.+.+...++..++.++.+++.||++||+.+..+....++......+.++ .+.+.+..++.
T Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  311 (365)
T TIGR00900       232 ALFPYVQSKYLGRGSTHYGWVLAAFGLGALLGALLLGLLGRYFKRMALMTGAIFVIGLAILVVGLTPPNFPLFLVLWFAI  311 (365)
T ss_pred             HHhHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHH
Confidence            455666665 8999999999999999999999999999999999999998887777777777766664 77778888999


Q ss_pred             HhhcCch-hhHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Q 030356          125 GIGLGSG-PVCLSWFLEFIPASNRGMWMVVISIFWTLGTIFEAALAWGNILLNS  177 (179)
Q Consensus       125 G~~~g~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~~~~~~  177 (179)
                      |++.+.. +...+++.|..|+++|++..++++....++..++|.+++++.+..|
T Consensus       312 g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~g~l~~~~g  365 (365)
T TIGR00900       312 GVGYGPINVPQGTLLQRRVPAELLGRVFGAQFSLSHAAWPLGLILAGPLADHLG  365 (365)
T ss_pred             HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            9999888 8888999999999999999999999999999999999999988654

>TIGR00899 2A0120 sugar efflux transporter

Probab=99.71  E-value=7.7e-16  Score=116.56  Aligned_cols=143  Identities=22%  Similarity=0.124  Sum_probs=115.7

Q ss_pred             HHHHHHHHHHHHhhhcc-hhcccCCCchhHHHHHHHHHHHHHHHHHHHhhhhccccchhHHHH-HHHHHHHHHHHHHHHH
Q 030356           35 LVAEAMEIMILSFIGPA-IKSEWNLSPAQETLLTSVVFAGLLVGSYSWGFISDNYGRRKGLLG-IAMLASVAGLLSAFSL  112 (179)
Q Consensus        35 ~~~~~~~~~~~~~~~~~-~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~d~~G~r~~~~~-~~~~~~~~~~~~~~~~  112 (179)
                      .+..........+..|. +.+++|.|+.+.+++.+.+.+...+.+++.|+++||+||||.++. +.....+..+++++++
T Consensus         6 ~~~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~   85 (375)
T TIGR00899         6 AFLTGIAGALQFPTLSLFLSEEVRARPAMIGLFYTGSAIVGIAVSQLLATRSDYQGDRKGLILFCCLLAALACLLFAWNR   85 (375)
T ss_pred             HHHHHHHHHHHhhHHHHHHHcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHHHHhcc
Confidence            34455555555555554 567899999999999999999999999999999999999987654 5555566777788889


Q ss_pred             HHHHHHHHHHHHHhhcCch-hhHHHHHHHhccccchhHH--HHHHHHHHHHHHHHHHHHHHHHhccCC
Q 030356          113 NYLSLVTLRGLVGIGLGSG-PVCLSWFLEFIPASNRGMW--MVVISIFWTLGTIFEAALAWGNILLNS  177 (179)
Q Consensus       113 ~~~~~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~r~~~--~~~~~~~~~~g~~~~~~i~~~~~~~~~  177 (179)
                      +++.+++.|++.|.+.+.. +....+..|..|+++|++.  .+.......+|..++|.+++++.+..+
T Consensus        86 ~~~~l~~~~~~~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~~~  153 (375)
T TIGR00899        86 NYFLLLVLGVLLSSFASTANPQLFALAREHADRTGREAVMFSSVMRAQISLAWVIGPPLAFWLALGFG  153 (375)
T ss_pred             hHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhcchhhHHHHHHHHHHHhHHHHHhhhHHHHHHHhcc
Confidence            9998888999998877777 7778888898888877754  577888889999999999999887654

This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.

>PRK15462 dipeptide/tripeptide permease D; Provisional

Probab=99.71  E-value=8.8e-16  Score=119.70  Aligned_cols=141  Identities=14%  Similarity=0.045  Sum_probs=110.8

Q ss_pred             HHHHHHHHHHhhh-cchhcccCCCchhHHHHHHHHHHHHHHHHHHHhhhhccc-cchhHHHHHHHHHHHHHHHHHHHH-H
Q 030356           37 AEAMEIMILSFIG-PAIKSEWNLSPAQETLLTSVVFAGLLVGSYSWGFISDNY-GRRKGLLGIAMLASVAGLLSAFSL-N  113 (179)
Q Consensus        37 ~~~~~~~~~~~~~-~~~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~d~~-G~r~~~~~~~~~~~~~~~~~~~~~-~  113 (179)
                      ...+.++.....+ .++.+++|.++.+.+.+.+.+.....++.++.|+++||+ ||||+++.+.++..++.+++...+ +
T Consensus        20 ~e~fs~Yg~~~~L~~yL~~~lgls~~~a~~i~~~~~~~~~l~~ligG~LaDRilGrrr~iliG~il~~lg~lll~~~~~~   99 (493)
T PRK15462         20 WEYFSFYGMRALLILYLTNQLKYDDNHAYELFSAYCSLVYVTPILGGFLADKVLGNRMAVMLGALLMAIGHVVLGASEIH   99 (493)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHhhcc
Confidence            3333444444344 444566899999999999999999999999999999999 999999999999988887665433 2


Q ss_pred             HHHHHHHHHHHHhhcCch-hhHHHHHHHhcccc--chhHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Q 030356          114 YLSLVTLRGLVGIGLGSG-PVCLSWFLEFIPAS--NRGMWMVVISIFWTLGTIFEAALAWGNILLNS  177 (179)
Q Consensus       114 ~~~~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~--~r~~~~~~~~~~~~~g~~~~~~i~~~~~~~~~  177 (179)
                      ...+.+...+..++.|.. +...++++|.+|++  +|.++.+++....++|+.++|.+.+++.+..+
T Consensus       100 ~~~~~l~l~li~iG~G~~~~~~~alv~elfp~~~~~R~sgf~i~Y~~~nlG~~iap~l~g~L~~~~G  166 (493)
T PRK15462        100 PSFLYLSLAIIVCGYGLFKSNVSCLLGELYEPTDPRRDGGFSLMYAAGNVGSIIAPIACGYAQEEYS  166 (493)
T ss_pred             hhHHHHHHHHHHHhcccccccHHHHHHHHCCCCCccccceehHHHHHHHHHHHHHHHHHHHHHhhhC
Confidence            223344444555666776 77788999999986  79999999999999999999999999987654

>TIGR00902 2A0127 phenyl proprionate permease family protein

Probab=99.70  E-value=9.4e-16  Score=116.90  Aligned_cols=129  Identities=11%  Similarity=-0.091  Sum_probs=117.4

Q ss_pred             hhcchhcccCCCchhHHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 030356           48 IGPAIKSEWNLSPAQETLLTSVVFAGLLVGSYSWGFISDNYGRRKGLLGIAMLASVAGLLSAFSLNYLSLVTLRGLVGIG  127 (179)
Q Consensus        48 ~~~~~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~d~~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~  127 (179)
                      ..|.+.+|.|.++.+.+.+.+...++..++.++.+++.||+|+|+.+.++.+...+....+++.++.+.++...++.|++
T Consensus       227 ~~~~~l~~~g~s~~~~g~l~~~~~~~~i~~~~~~~~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~q~l~g~~  306 (382)
T TIGR00902       227 FSAIYWQAAGISASATGLLWGIGVLAEIIIFAFSNKLFQNCSARDLLLISAIACVGRWAIIGAIEAFPLIFLLQILHCGT  306 (382)
T ss_pred             HHHHHHHHCCCCHhHHHHHHHHHHHHHHHHHHHhHHHHhhCCHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHH
Confidence            44555567999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCch-hhHHHHHHHhccccchhHHHHHHH-HHHHHHHHHHHHHHHHHhccCC
Q 030356          128 LGSG-PVCLSWFLEFIPASNRGMWMVVIS-IFWTLGTIFEAALAWGNILLNS  177 (179)
Q Consensus       128 ~g~~-~~~~~~~~~~~~~~~r~~~~~~~~-~~~~~g~~~~~~i~~~~~~~~~  177 (179)
                      .+.. +....++.+. |+++|++++++++ ...++|..++|.++|++.+..+
T Consensus       307 ~~~~~~~~~~~i~~~-~~~~~~~~q~~~~~~~~g~g~~~g~~~~G~l~~~~g  357 (382)
T TIGR00902       307 FAVCHLAAMRYIAAQ-PGSEIAKLQALYNALAMGGLIAIFTAFAGFIYPTLG  357 (382)
T ss_pred             HHHHHHHHHHHHHhC-CHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            9998 8888899988 9999999999986 5788999999999999998764

This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.

>TIGR00895 2A0115 benzoate transport

Probab=99.70  E-value=2.6e-15  Score=114.12  Aligned_cols=138  Identities=20%  Similarity=0.171  Sum_probs=108.9

Q ss_pred             HHHHHHHHHHHhhhcchhcccCCCchhHHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHH
Q 030356           36 VAEAMEIMILSFIGPAIKSEWNLSPAQETLLTSVVFAGLLVGSYSWGFISDNYGRRKGLLGIAMLASVAGLLSAFSLNYL  115 (179)
Q Consensus        36 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~d~~G~r~~~~~~~~~~~~~~~~~~~~~~~~  115 (179)
                      +.............|.+.+++|.++.+.+...+...++..++.++.|++.||+|||+.+............+....++..
T Consensus       260 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  339 (398)
T TIGR00895       260 FMLLVGVYFLTNWLPKLMVELGFSLSLAATGGALFNFGGVIGSIIFGWLADRLGPRVTALLLLLGAVFAVLVGSTLFSPT  339 (398)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHhhCHH
Confidence            33444444445556778888999999999999999999999999999999999999544443333333333333345666


Q ss_pred             HHHHHHHHHHhhcCch-hhHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 030356          116 SLVTLRGLVGIGLGSG-PVCLSWFLEFIPASNRGMWMVVISIFWTLGTIFEAALAWGNI  173 (179)
Q Consensus       116 ~~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~~  173 (179)
                      ...+..++.|++.+.. +...+++.|.+|+++|+++.++++....+|..++|.++++++
T Consensus       340 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~G~ll  398 (398)
T TIGR00895       340 LLLLLGAIAGFFVNGGQSGLYALMALFYPTAIRATGVGWAIGIGRLGAIIGPILAGYLL  398 (398)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhHHhcC
Confidence            6777888999998887 888899999999999999999999999999999999998763

>TIGR00891 2A0112 putative sialic acid transporter

Probab=99.69  E-value=2.5e-15  Score=114.63  Aligned_cols=132  Identities=17%  Similarity=0.156  Sum_probs=106.6

Q ss_pred             hhhcchhcccCCCchhHHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
Q 030356           47 FIGPAIKSEWNLSPAQETLLTSVVFAGLLVGSYSWGFISDNYGRRKGLLGIAMLASVAGL-LSAFSLNYLSLVTLRGLVG  125 (179)
Q Consensus        47 ~~~~~~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~d~~G~r~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~G  125 (179)
                      ...+++.+++|.++.+.+++.+...++..+++++.|++.||+|||+.+..+.....+... .....++...+.+..++.|
T Consensus       260 ~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  339 (405)
T TIGR00891       260 LLPTYLKADLGLSPHTVANIVVFSNIGAIVGGCVFGFLGDWLGRRKAYVCSLLAGQLLIIPVFAIGANVAVLGLGLFFQQ  339 (405)
T ss_pred             hhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchhhhHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence            334455567899999999999999999999999999999999999998887766533332 2333345555556666777


Q ss_pred             hhcCch-hhHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHHHhccCCC
Q 030356          126 IGLGSG-PVCLSWFLEFIPASNRGMWMVVISIFWTLGTIFEAALAWGNILLNSK  178 (179)
Q Consensus       126 ~~~g~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~~~~~~~  178 (179)
                      ...+.. +....++.|.+|+++|++++++.+....+|..++|++.+++.+..|+
T Consensus       340 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~g~~~~g~l~~~~g~  393 (405)
T TIGR00891       340 MLVQGIWGILPKHLGEYFPTDQRAAGLGFTYQLGNLGGALAPIIGALLAQRLDE  393 (405)
T ss_pred             HHHccchhhHHHHHhhhCCcchhHHHhhHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            666665 77788899999999999999999999999999999999999997663

>PRK15011 sugar efflux transporter B; Provisional

Probab=99.68  E-value=3.1e-15  Score=114.43  Aligned_cols=127  Identities=15%  Similarity=0.075  Sum_probs=103.3

Q ss_pred             cchhcccCCCchhHHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 030356           50 PAIKSEWNLSPAQETLLTSVVFAGLLVGSYSWGFISDNYGRRKGLLGIAMLASVAGLLSAFSLNYLSLVTLRGLVGIGLG  129 (179)
Q Consensus        50 ~~~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~d~~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~g  129 (179)
                      +++.+++|.++.+.+.+.+...++..+++++.|+++||+|||+.+..+.....+........++...+++.+++.+++.+
T Consensus       241 ~~l~~~~~~~~~~~g~~~~~~~~~~i~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~g  320 (393)
T PRK15011        241 LFIINELHLPEKLAGVMMGTAAGLEIPTMLIAGYFAKRLGKRFLMRVAAVAGVCFYAGMLMAHSPAILLGLQLLNAIYIG  320 (393)
T ss_pred             HHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence            34556789999999998888888888999999999999999998877766655555445556677777778888888777


Q ss_pred             ch-hhHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Q 030356          130 SG-PVCLSWFLEFIPASNRGMWMVVISIFWTLGTIFEAALAWGNILLNS  177 (179)
Q Consensus       130 ~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~~~~~~  177 (179)
                      .. +....+..|.+|+ +|++++++++....+|..++|.+++.+.+..+
T Consensus       321 ~~~~~~~~~~~~~~p~-~~g~~~~~~~~~~~lg~~~g~~l~G~i~~~~g  368 (393)
T PRK15011        321 ILGGIGMLYFQDLMPG-QAGSATTLYTNTSRVGWIIAGSLAGIVAEIWN  368 (393)
T ss_pred             HHHHHHHHHHHHhCCC-CcchHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            66 6667778898885 59999999999999999999999999988643

>TIGR00883 2A0106 metabolite-proton symporter

Probab=99.68  E-value=9.9e-16  Score=116.22  Aligned_cols=143  Identities=17%  Similarity=0.116  Sum_probs=108.4

Q ss_pred             HHHHHHHHHHHhhhcchh-cccCCCchhHHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHH-H-HHHHH-
Q 030356           36 VAEAMEIMILSFIGPAIK-SEWNLSPAQETLLTSVVFAGLLVGSYSWGFISDNYGRRKGLLGIAMLASVAG-L-LSAFS-  111 (179)
Q Consensus        36 ~~~~~~~~~~~~~~~~~~-~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~d~~G~r~~~~~~~~~~~~~~-~-~~~~~-  111 (179)
                      +.............|.+. +++|.++.+.+.......++..++.++.|+++||+|||+.+.....+..+.. . ..... 
T Consensus       229 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~  308 (394)
T TIGR00883       229 IATTTTFYLITTYLPTYLTQTLGLSANSALLVLMLSLILFFITIPLSGALSDRIGRRPVLIIFTVLAALLAVPLLMALLD  308 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            333333444444445554 6789999999999999999999999999999999999998775554443332 1 22222 


Q ss_pred             -HHHHHHHHHHHHHHhhcCch-hhHHHHHHHhccccchhHHHHH-HHHHHHHHHHHHHHHHHHHhccCCC
Q 030356          112 -LNYLSLVTLRGLVGIGLGSG-PVCLSWFLEFIPASNRGMWMVV-ISIFWTLGTIFEAALAWGNILLNSK  178 (179)
Q Consensus       112 -~~~~~~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~r~~~~~~-~~~~~~~g~~~~~~i~~~~~~~~~~  178 (179)
                       ++...+....++.|++.+.. +...+++.|.+|+++|+++.++ ++....+|..++|.+++++.+..+.
T Consensus       309 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~g~~~~p~~~g~l~~~~g~  378 (394)
T TIGR00883       309 SGSFTLFFFLVLGLALIGGMYTGPMGSFLPELFPTEVRYTGASLAYNLAGAIFGGFAPYIAAALVAMTGD  378 (394)
T ss_pred             CCchHHHHHHHHHHHHHHHHHhhhHHHHHHHhCCccceeeEeeehhHhHHHHHhhHHHHHHHHHHHHcCc
Confidence             35555666778888888777 8888999999999999999998 5677778999999999999987763

This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=99.68  E-value=2.7e-15  Score=128.15  Aligned_cols=131  Identities=13%  Similarity=0.103  Sum_probs=110.5

Q ss_pred             HHhhhcchhcccCCCc--hhHHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHHHHH---HHHHHHHHHH
Q 030356           45 LSFIGPAIKSEWNLSP--AQETLLTSVVFAGLLVGSYSWGFISDNYGRRKGLLGIAMLASVAGLLSA---FSLNYLSLVT  119 (179)
Q Consensus        45 ~~~~~~~~~~~~~~s~--~~~~~~~~~~~~~~~i~~~~~g~l~d~~G~r~~~~~~~~~~~~~~~~~~---~~~~~~~~~~  119 (179)
                      .....+.+..+++.+.  ...+++.+++.++..++++++|+++||+|||++++.+.++.++..++..   ..++++.+++
T Consensus        29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~G~l~Dr~grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~  108 (1146)
T PRK08633         29 KILIQNTLIKAYDGSEQVILTAIVNALFLLPFLLLSSPAGFLADKFSKNRVIRIVKLFEVGLTLLIVLAYYLGWFWLAFA  108 (1146)
T ss_pred             HHHHHHHHHHHcCcccHHHHHHHHHHHHHHHHHHHhhhHhhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHH
Confidence            3344455555566544  3468999999999999999999999999999999988876665554433   3567889999


Q ss_pred             HHHHHHhhcCch-hhHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 030356          120 LRGLVGIGLGSG-PVCLSWFLEFIPASNRGMWMVVISIFWTLGTIFEAALAWGNILL  175 (179)
Q Consensus       120 ~~~l~G~~~g~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~~~~  175 (179)
                      .|++.|++.+.. +...+++.|++|+++|+++++++..+..+|..++|.+++++.+.
T Consensus       109 ~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~ig~~lg~~l~~~l~~~  165 (1146)
T PRK08633        109 VTFLLGAQSAIYSPAKYGIIPELVGKENLSRANGLLEAFTIVAILAGTALFSFLFES  165 (1146)
T ss_pred             HHHHHHHHHHhhchHHHhhhHHhcCcccchhhhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence            999999999998 88899999999999999999999999999999999999998865

>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]

Probab=99.67  E-value=8e-16  Score=121.67  Aligned_cols=120  Identities=28%  Similarity=0.345  Sum_probs=110.0

Q ss_pred             cccCCCchhHHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCch-h
Q 030356           54 SEWNLSPAQETLLTSVVFAGLLVGSYSWGFISDNYGRRKGLLGIAMLASVAGLLSAFSLNYLSLVTLRGLVGIGLGSG-P  132 (179)
Q Consensus        54 ~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~d~~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~-~  132 (179)
                      +.++.+.....+..+++.+|..+|++++|.++||+|||++++.+.++..++.+..++++|+..+++.|++.|++.+.. .
T Consensus       111 ~~~c~~~~~~~~~~s~~~~G~~vG~~i~g~lsD~~GRk~~~~~~~~~~~i~~~~~a~a~~~~~~~~~Rfl~G~~~~~~~~  190 (521)
T KOG0255|consen  111 NLVCDSSTLVALGQSLFFLGVLVGSLIFGPLSDRFGRKPVLLVSLLLFIIFGILTAFAPNYWMFLIFRFLSGFFGSGPLT  190 (521)
T ss_pred             ceeeCcHhHHHHHHHHHHHHHHHHHhhheehHhhcccHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhccchhH
Confidence            345667788899999999999999999999999999999999999999999999999999999999999999999998 8


Q ss_pred             hHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 030356          133 VCLSWFLEFIPASNRGMWMVVISIFWTLGTIFEAALAWGNIL  174 (179)
Q Consensus       133 ~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~~~  174 (179)
                      +...++.|++++++|+.+..+ ......++.++|..++++..
T Consensus       191 ~~~~~~~E~~~~~~R~~~~~~-~~~~~~~~~~~~~~~a~~~~  231 (521)
T KOG0255|consen  191 VGFGLVAEIVSPKQRGLALTL-GGFFFVGGLMLPAGAAYITR  231 (521)
T ss_pred             HhHhhheeecCcchhhHHHHH-HHHHHHHHHHHHHHHHHHHh
Confidence            899999999999999999999 77777777777888887765

>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=99.67  E-value=2.9e-15  Score=116.24  Aligned_cols=126  Identities=22%  Similarity=0.386  Sum_probs=115.3

Q ss_pred             cccCCCchhHHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHhhcCch
Q 030356           54 SEWNLSPAQETLLTSVVFAGLLVGSYSWGFISDNYGRRKGLLGIAMLASVAGLLSAFSLN--YLSLVTLRGLVGIGLGSG  131 (179)
Q Consensus        54 ~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~d~~G~r~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~G~~~g~~  131 (179)
                      .+++.+++|.+++.+.++.|+++++.+.|++.||+|.|+++..+.++.++.+++...+.+  ++.+++.|+++|+++|..
T Consensus        66 ~~~~ws~~~k~~i~ss~~~G~i~~~iP~g~l~~k~G~r~v~~~~~~~sa~~t~l~P~aa~~~~~~~~~~R~lqGl~~g~~  145 (466)
T KOG2532|consen   66 GEYDWSSTEKGLIFSSFFWGYILGQIPGGYLADKFGARRVFFISGLISALLTLLTPLAASIGFYLLLVLRFLQGLGQGVL  145 (466)
T ss_pred             ceecCCHHHHHHHHHHHHHHHHHHHcCcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHhHHHHhHH
Confidence            357889999999999999999999999999999999999999999999999999887653  456788999999999998


Q ss_pred             -hhHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHHHhccCCCC
Q 030356          132 -PVCLSWFLEFIPASNRGMWMVVISIFWTLGTIFEAALAWGNILLNSKN  179 (179)
Q Consensus       132 -~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~~~~~~~~  179 (179)
                       +....+..+|.|+++|++..++...+..+|.+++-++++++.+...+|
T Consensus       146 ~pa~~~i~~~W~P~~Ers~~~ail~~g~q~g~v~~mp~sg~lc~s~~GW  194 (466)
T KOG2532|consen  146 FPAIGSILAKWAPPNERSTFIAILTAGSQLGTIITMPVSGLLCESSLGW  194 (466)
T ss_pred             HhhhhceeeeECCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccCCCC
Confidence             999999999999999999999999999999999999999998873334

>TIGR00896 CynX cyanate transporter

Probab=99.66  E-value=1.1e-14  Score=109.94  Aligned_cols=135  Identities=14%  Similarity=-0.014  Sum_probs=104.9

Q ss_pred             HHHhhhcchhcccCCCchhHHHHHHHHHHHHHHHHHHHhhhhccc-cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030356           44 ILSFIGPAIKSEWNLSPAQETLLTSVVFAGLLVGSYSWGFISDNY-GRRKGLLGIAMLASVAGLLSAFSLNYLSLVTLRG  122 (179)
Q Consensus        44 ~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~d~~-G~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  122 (179)
                      ......|.+.++.|.++.+.+.+.+...++..+++++.|++.||+ +||+.+..+..+.+++.+...+.++.... ...+
T Consensus       215 ~~~~~lp~~~~~~g~~~~~~g~~~~~~~~~~i~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~  293 (355)
T TIGR00896       215 SLIGWLPAILISHGASAATAGSLLALMQLAQAASALLIPALARRVKDQRGIVAVLAVLQLVGLCGLLFAPMHGLW-AWAL  293 (355)
T ss_pred             HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHhhhhHHH-HHHH
Confidence            334455666677899999999999999999999999999999999 56667777777777776666555433222 2456


Q ss_pred             HHHhhcCch-hhHHHHHHHhcc-ccchhHHHHHHHHHHHHHHHHHHHHHHHHhccCCCC
Q 030356          123 LVGIGLGSG-PVCLSWFLEFIP-ASNRGMWMVVISIFWTLGTIFEAALAWGNILLNSKN  179 (179)
Q Consensus       123 l~G~~~g~~-~~~~~~~~~~~~-~~~r~~~~~~~~~~~~~g~~~~~~i~~~~~~~~~~~  179 (179)
                      +.|++.+.. +...+.+.+..+ +++++...++.+....++..++|.+.+++.++.++|
T Consensus       294 l~g~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~gp~~~G~l~~~~g~~  352 (355)
T TIGR00896       294 VLGLGQGGAFPLALTLIGLRSRQAAQAAALSAMAQSIGYLLAALGPLFVGVLHDISGNW  352 (355)
T ss_pred             HHHHhhhhHhHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            789999887 776666665554 567799999999889999999999999999987754

This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.

>PRK10642 proline/glycine betaine transporter; Provisional

Probab=99.66  E-value=1.3e-14  Score=114.14  Aligned_cols=133  Identities=17%  Similarity=0.081  Sum_probs=100.1

Q ss_pred             HHhhhcch-hcccCCCchhHHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHHH-H--HHHHHHHHHHHH
Q 030356           45 LSFIGPAI-KSEWNLSPAQETLLTSVVFAGLLVGSYSWGFISDNYGRRKGLLGIAMLASVAGLL-S--AFSLNYLSLVTL  120 (179)
Q Consensus        45 ~~~~~~~~-~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~d~~G~r~~~~~~~~~~~~~~~~-~--~~~~~~~~~~~~  120 (179)
                      .....|.+ .+++|.+..+..+..+...++..++++..|+++||+|||+++..+.+...+..+. .  ..+++...+++.
T Consensus       269 ~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  348 (490)
T PRK10642        269 LLTYMPSYLSHNLHYSEDHGVLIIIAIMIGMLFVQPVMGLLSDRFGRRPFVILGSVALFVLAIPAFILINSNVIGLIFAG  348 (490)
T ss_pred             HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHH
Confidence            33344544 4668998888888888899999999999999999999999988776644433322 2  223346667778


Q ss_pred             HHHHHhhcCch-hhHHHHHHHhccccchhHHHHH-HHHHHHHHHHHHHHHHHHHhccCCC
Q 030356          121 RGLVGIGLGSG-PVCLSWFLEFIPASNRGMWMVV-ISIFWTLGTIFEAALAWGNILLNSK  178 (179)
Q Consensus       121 ~~l~G~~~g~~-~~~~~~~~~~~~~~~r~~~~~~-~~~~~~~g~~~~~~i~~~~~~~~~~  178 (179)
                      +++.|++.+.. .....++.|.+|++.|+++.+. ++. ..+++.++|.+.+++.+..++
T Consensus       349 ~~~~g~~~~~~~g~~~~~~~~~~p~~~Rg~~~g~~~~~-~~~~g~~~p~i~g~l~~~~~~  407 (490)
T PRK10642        349 LLMLAVILNCFTGVMASTLPAMFPTHIRYSALAAAFNI-SVLVAGLTPTLAAWLVESTQN  407 (490)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHCCCccchHHHHHHHHH-HHHHHHHHHHHHHHHHHHhCC
Confidence            88888877666 6677888899999999999998 555 455677889999988765443

>TIGR01299 synapt_SV2 synaptic vesicle protein SV2

Probab=99.66  E-value=6.5e-15  Score=119.81  Aligned_cols=112  Identities=13%  Similarity=0.150  Sum_probs=99.4

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCch-hhHHHHHHHhc
Q 030356           64 TLLTSVVFAGLLVGSYSWGFISDNYGRRKGLLGIAMLASVAGLLSAFSLNYLSLVTLRGLVGIGLGSG-PVCLSWFLEFI  142 (179)
Q Consensus        64 ~~~~~~~~~~~~i~~~~~g~l~d~~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~-~~~~~~~~~~~  142 (179)
                      .....+..++.+++.++.|+++||+|||++++.+.++.+++.++.++.++...+++.+++.|++.+.. +...++++|++
T Consensus       598 ~~~~~l~~l~~i~G~il~g~L~Dr~GRr~~l~~~~~lsai~~ll~~~~~s~~~ll~~~~l~g~~~~~~~~~~~a~~aEl~  677 (742)
T TIGR01299       598 YFVNFLGTLAVLPGNIVSALLMDKIGRLRMLAGSMVLSCISCFFLSFGNSESAMIALLCLFGGLSIAAWNALDVLTVELY  677 (742)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            34466777899999999999999999999999999999999988888887777777788888877777 88889999999


Q ss_pred             cccchhHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 030356          143 PASNRGMWMVVISIFWTLGTIFEAALAWGNILL  175 (179)
Q Consensus       143 ~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~~~~  175 (179)
                      |+++|++++++.+....+|.+++|++++.+.+.
T Consensus       678 Pt~~Rgta~Gi~~~~~rlGaiigp~i~g~L~~~  710 (742)
T TIGR01299       678 PSDKRATAFGFLNALCKAAAVLGILIFGSFVGI  710 (742)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            999999999999999999999999999877653

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.

>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

Probab=99.66  E-value=1.5e-14  Score=107.99  Aligned_cols=135  Identities=30%  Similarity=0.304  Sum_probs=120.3

Q ss_pred             HHHHhhhcchhcc-cCCCchhHHHHHHHHHHHHHHHHHHHhhhhccccchh-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030356           43 MILSFIGPAIKSE-WNLSPAQETLLTSVVFAGLLVGSYSWGFISDNYGRRK-GLLGIAMLASVAGLLSAFSLNYLSLVTL  120 (179)
Q Consensus        43 ~~~~~~~~~~~~~-~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~d~~G~r~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~  120 (179)
                      .......|.+.++ +|.++.+.++..+...++..++.++.+++.||+|||+ .+..+..+..++.+.....++.....+.
T Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~  271 (352)
T cd06174         192 YGLLTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGLLSDRLGRRRLLLLIGLLLAALGLLLLALAPSLALLLVA  271 (352)
T ss_pred             HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccHHHHHHH
Confidence            3334445555555 4889999999999999999999999999999999999 9999999999999888888888888899


Q ss_pred             HHHHHhhcCch-hhHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Q 030356          121 RGLVGIGLGSG-PVCLSWFLEFIPASNRGMWMVVISIFWTLGTIFEAALAWGNILLNS  177 (179)
Q Consensus       121 ~~l~G~~~g~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~~~~~~  177 (179)
                      .++.|++.+.. +....++.|..|+++|++.+++++....+|..++|.+.+.+.+..+
T Consensus       272 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~g~l~~~~~  329 (352)
T cd06174         272 LLLLGFGLGFAFPALLTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLDTGG  329 (352)
T ss_pred             HHHHHHHHhccchhHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC
Confidence            99999999998 8899999999999999999999999999999999999999987543

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3

>TIGR00899 2A0120 sugar efflux transporter

Probab=99.65  E-value=1.2e-14  Score=110.05  Aligned_cols=127  Identities=17%  Similarity=0.094  Sum_probs=105.6

Q ss_pred             cchhcccCCCchhHHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 030356           50 PAIKSEWNLSPAQETLLTSVVFAGLLVGSYSWGFISDNYGRRKGLLGIAMLASVAGLLSAFSLNYLSLVTLRGLVGIGLG  129 (179)
Q Consensus        50 ~~~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~d~~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~g  129 (179)
                      .++.+++|.++.+.+++.+.......++.++.|++.||+|||+.+..+.+...+......+.++.+.+.+.+++.|++.+
T Consensus       224 ~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g  303 (375)
T TIGR00899       224 LLIIHELGLPDKLAGLMMGTAAGLEIPFMLLAGYLIKRFGKRRLMLLAALAGVAFYTGLAADNSLWALLMLQLLNAIFIG  303 (375)
T ss_pred             HHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34456789999999998888888888899999999999999999888777666665555666777777778888999888


Q ss_pred             ch-hhHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Q 030356          130 SG-PVCLSWFLEFIPASNRGMWMVVISIFWTLGTIFEAALAWGNILLNS  177 (179)
Q Consensus       130 ~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~~~~~~  177 (179)
                      .. +....+..|..|+ +|++++++++....+|..++|.+++.+.+..+
T Consensus       304 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~g~~~~g~~~~~~g  351 (375)
T TIGR00899       304 ILAGIGMLYFQDLMPG-RAGAATTLYTNTGRVGWIIAGSVGGILAERWS  351 (375)
T ss_pred             HHHHHHHHHHHHhCcc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            77 7777888898875 56799999999999999999999999887654

This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.

>TIGR00883 2A0106 metabolite-proton symporter

Probab=99.65  E-value=3.7e-15  Score=113.12  Aligned_cols=137  Identities=19%  Similarity=0.286  Sum_probs=111.3

Q ss_pred             HHHHHHHHHHhhhcchhcccC--CCchhHHHHHHH-----HHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHHHHH
Q 030356           37 AEAMEIMILSFIGPAIKSEWN--LSPAQETLLTSV-----VFAGLLVGSYSWGFISDNYGRRKGLLGIAMLASVAGLLSA  109 (179)
Q Consensus        37 ~~~~~~~~~~~~~~~~~~~~~--~s~~~~~~~~~~-----~~~~~~i~~~~~g~l~d~~G~r~~~~~~~~~~~~~~~~~~  109 (179)
                      .++++++...+..+.+.+++.  .++++.+...+.     ..++..+++++.|+++||+|||+++..+.++..++.+++.
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~   83 (394)
T TIGR00883         4 VEWFDFYLYGFAAVLVFHTFFPPSGDPLVALLATFATFAAGFLARPLGAIVFGHFGDRIGRKKTLVITLLMMGIGTLLIG   83 (394)
T ss_pred             hhHHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHhhhHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHh
Confidence            456777777777777777743  445555554433     3333457899999999999999999999999999999888


Q ss_pred             HHHHHH--------HHHHHHHHHHhhcCch-hhHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 030356          110 FSLNYL--------SLVTLRGLVGIGLGSG-PVCLSWFLEFIPASNRGMWMVVISIFWTLGTIFEAALAWGNI  173 (179)
Q Consensus       110 ~~~~~~--------~~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~~  173 (179)
                      +++++.        .+++.|+++|++.+.. +....++.|++|+++|++..++.+.+..+|..+++.++..+.
T Consensus        84 ~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~~~  156 (394)
T TIGR00883        84 LLPSYATIGIWAPILLLLARLIQGFSLGGEWGGAALYLAEYAPPGKRGFYGSFQQVGAPVGLLLAALTVLLLS  156 (394)
T ss_pred             hCCChhhhHHHHHHHHHHHHHHHHhhccccccccHHHhhhcCCcccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            887764        4778899999999988 888999999999999999999999999999999998876654

This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.

>TIGR00889 2A0110 nucleoside transporter

Probab=99.65  E-value=4.1e-15  Score=114.72  Aligned_cols=128  Identities=11%  Similarity=0.005  Sum_probs=106.4

Q ss_pred             cchhcccCCC--------chhHHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHHHHHHHH----HHHHH
Q 030356           50 PAIKSEWNLS--------PAQETLLTSVVFAGLLVGSYSWGFISDNYGRRKGLLGIAMLASVAGLLSAFSL----NYLSL  117 (179)
Q Consensus        50 ~~~~~~~~~s--------~~~~~~~~~~~~~~~~i~~~~~g~l~d~~G~r~~~~~~~~~~~~~~~~~~~~~----~~~~~  117 (179)
                      +.+.++.|.+        .++.+...++..++..++.++.|+++||+|+|+++..+.+...+.........    +...+
T Consensus       232 ~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~i~~i~~~~~~g~l~dr~g~r~~l~~~~~~~~v~~~l~~~~~~~~~~~~~l  311 (418)
T TIGR00889       232 NGFLHEFGRNPEFADSFVVKNASIWMSLSQFSEIFFILTIPFFLKRFGIKKVMLLSLVAWALRFGFFAYGDPEYFGYALL  311 (418)
T ss_pred             HHHHHHhcccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCcchhhHHHH
Confidence            4445555543        35679999999999999999999999999999999999998888766665532    23556


Q ss_pred             HHHHHHHHhhcCch-hhHHHHHHHhccccchhHHHHHHH-HHHHHHHHHHHHHHHHHhccCC
Q 030356          118 VTLRGLVGIGLGSG-PVCLSWFLEFIPASNRGMWMVVIS-IFWTLGTIFEAALAWGNILLNS  177 (179)
Q Consensus       118 ~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~r~~~~~~~~-~~~~~g~~~~~~i~~~~~~~~~  177 (179)
                      ++.+++.|++.+.. +....++.|.+|+++|++++++.+ ...++|..++|.+++++.+..+
T Consensus       312 ~l~~~l~g~~~~~~~~~~~~~i~~~~p~~~~g~~~g~~~~~~~~lg~~iGp~l~G~l~~~~g  373 (418)
T TIGR00889       312 FLSMIVYGCAFDFFNISGSVFVEKEVPVHIRASAQGLFTLMCNGFGSLLGYILSGVMVEKMF  373 (418)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhc
Confidence            67889999998877 777889999999999999999997 6789999999999999998754

This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.

>PRK03545 putative arabinose transporter; Provisional

Probab=99.65  E-value=7.2e-14  Score=106.79  Aligned_cols=130  Identities=21%  Similarity=0.121  Sum_probs=103.4

Q ss_pred             HhhhcchhcccCCCchhHHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
Q 030356           46 SFIGPAIKSEWNLSPAQETLLTSVVFAGLLVGSYSWGFISDNYGRRKGLLGIAMLASVAG-LLSAFSLNYLSLVTLRGLV  124 (179)
Q Consensus        46 ~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~d~~G~r~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~  124 (179)
                      .+..|++.++.|.|+.+.+++.+...++..+++++.|+++||+|||+... +..+..+.. .+....++...+.+..++.
T Consensus       226 ~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~l~  304 (390)
T PRK03545        226 SYIEPFVQQVAGLSENFATLLLLLFGGAGIIGSVLFSRLGNRHPSGFLLI-AIALLLVCLLLLLPAANSEWHLSVLSIFW  304 (390)
T ss_pred             HHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHH-HHHHHHHHHHHHHHHhchHHHHHHHHHHH
Confidence            44445666668999999999999999999999999999999999887544 433333333 3334556677777888899


Q ss_pred             HhhcCch-hhHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Q 030356          125 GIGLGSG-PVCLSWFLEFIPASNRGMWMVVISIFWTLGTIFEAALAWGNILLNS  177 (179)
Q Consensus       125 G~~~g~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~~~~~~  177 (179)
                      |++.+.. +.....+.|..| ++|++++++++....+|..++|.+++++.+..+
T Consensus       305 g~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~G~~~~G~~~~~~g  357 (390)
T PRK03545        305 GIAIMCIGLAMQVKVLKLAP-DATDVAMALFSGIFNIGIGAGALLGNQVSLHLG  357 (390)
T ss_pred             HHHHhcchHHHHHHHHHhCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence            9988776 666777788766 688999999999999999999999999998765

>TIGR00897 2A0118 polyol permease family

Probab=99.65  E-value=2.3e-14  Score=110.02  Aligned_cols=140  Identities=14%  Similarity=0.119  Sum_probs=104.0

Q ss_pred             HHHHHHHHHHhhhcchhcccCCCchhHHHHHHHHHHHHHHHHHHHhhhhccccchhHHH-HHHHHHHHHHHHHHH-----
Q 030356           37 AEAMEIMILSFIGPAIKSEWNLSPAQETLLTSVVFAGLLVGSYSWGFISDNYGRRKGLL-GIAMLASVAGLLSAF-----  110 (179)
Q Consensus        37 ~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~d~~G~r~~~~-~~~~~~~~~~~~~~~-----  110 (179)
                      +............|.+.+++|.++.+.+.+.+...++..++++..|+++||+|||+.+. .+.+...+..+....     
T Consensus       233 ~~~~~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~l~~~~~~~~l~~~~~~~  312 (402)
T TIGR00897       233 INTIGLFGFAVFLPMFVAELGFSTSEWLQIWGTFFFTNIVFNVIFGIVGDKLGWMNTVRWFGGVGCGIFTLALYYIPQHF  312 (402)
T ss_pred             HHHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHcc
Confidence            33334444455667777889999999999999999999999999999999999988764 333333333322222     


Q ss_pred             HHHHHHHHHHHHHHHhhcCchhhHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Q 030356          111 SLNYLSLVTLRGLVGIGLGSGPVCLSWFLEFIPASNRGMWMVVISIFWTLGTIFEAALAWGNILLNS  177 (179)
Q Consensus       111 ~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~~~~~~  177 (179)
                      .++.....+..++.|++.+........+.|.. +++|+++.++++....+|..++|.+++.+.+..|
T Consensus       313 ~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~-~~~~g~~~g~~~~~~~lg~~~gp~i~g~l~~~~g  378 (402)
T TIGR00897       313 GHSFAVALIIAIALGIFLAGYVPLAAVFPTLA-PKHKGAAMSVLNLSAGLSAFLAPAIAVLFIGFFG  378 (402)
T ss_pred             CCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhC-cchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence            13455566778888887776633345566764 5689999999999999999999999999998765

This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.

>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.64  E-value=5.1e-16  Score=115.40  Aligned_cols=122  Identities=20%  Similarity=0.217  Sum_probs=115.0

Q ss_pred             cCCCchhHHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCch-hhH
Q 030356           56 WNLSPAQETLLTSVVFAGLLVGSYSWGFISDNYGRRKGLLGIAMLASVAGLLSAFSLNYLSLVTLRGLVGIGLGSG-PVC  134 (179)
Q Consensus        56 ~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~d~~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~-~~~  134 (179)
                      .+.++++.|++.+...+.+.+.+++.|.+.||+|+|.++++++..+...++++++.++++.+++.|.++|+|.+.. +..
T Consensus       101 ~~~e~~~iG~LFaskA~~qllvnp~~G~l~~~iGy~ipm~~Gl~vmf~sTilFafg~sy~~l~vAR~LQgvgsA~~~tsg  180 (464)
T KOG3764|consen  101 LDRENTQIGLLFASKALVQLLVNPFFGNLIDRIGYKIPMVAGLFVMFLSTILFAFGNSYPMLFVARSLQGVGSAFADTSG  180 (464)
T ss_pred             ccccccchhHHHHHHHHHHHHhcccchhhHHHhccccHHHHHHHHHHHHHHHHHHcchhHHHHHHHHHhhhhHHHHHhhh
Confidence            5567789999999999999999999999999999999999999999999999999999999999999999999998 889


Q ss_pred             HHHHHHhccccc-hhHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Q 030356          135 LSWFLEFIPASN-RGMWMVVISIFWTLGTIFEAALAWGNILLNS  177 (179)
Q Consensus       135 ~~~~~~~~~~~~-r~~~~~~~~~~~~~g~~~~~~i~~~~~~~~~  177 (179)
                      .+++++.||++. |++++|+...+.++|..++|++++.+-+..|
T Consensus       181 lamlAd~f~~d~er~~vmGialgfislG~lvgPpfGGilYe~~G  224 (464)
T KOG3764|consen  181 LAMLADVFPEDNERGSVMGIALGFISLGVLVGPPFGGILYEFAG  224 (464)
T ss_pred             HHHHHHHcccchhhhHHHHHHHHHHhccceecCCcccchHhhcC
Confidence            999999999865 7999999999999999999999999887654

>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=99.64  E-value=1.4e-14  Score=113.00  Aligned_cols=146  Identities=23%  Similarity=0.357  Sum_probs=123.9

Q ss_pred             HHHHHHHHHHHHHHHHHh-hhcchhcccCCCchhHHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHHHH
Q 030356           30 YAGLGLVAEAMEIMILSF-IGPAIKSEWNLSPAQETLLTSVVFAGLLVGSYSWGFISDNYGRRKGLLGIAMLASVAGLLS  108 (179)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~d~~G~r~~~~~~~~~~~~~~~~~  108 (179)
                      .+++..+....+...+.. .+..+.+|.+....+.+.+.+++.++++++.++.+.+.||++-.+.+....+.+.+..++.
T Consensus        49 ~~~~~y~~~~~d~~si~~a~l~g~~edl~~~~~~l~~~~t~F~v~Yii~~~p~~~L~~r~~ls~~l~~~~~~w~~~~~~~  128 (495)
T KOG2533|consen   49 FLCYLYFHAYLDKSSIVNASLSGLKEDLKLVGNQLGVLDTVFYVGYIIGQFPSGLLGDRFPLSKGLSVSGILWGLFGFLT  128 (495)
T ss_pred             HHHHHHHHHhcchhcchhHHHcCCccccchhhhhhhhHHHHHHHHHHHHHhhHHHHHHhCChHHHHHHHHHHHHHHHHHH
Confidence            333333444444433322 2233557888899999999999999999999999999999998888888888888888887


Q ss_pred             HHHHHHHHHHHHHHHHHhhcCch-hhHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 030356          109 AFSLNYLSLVTLRGLVGIGLGSG-PVCLSWFLEFIPASNRGMWMVVISIFWTLGTIFEAALAWGNILL  175 (179)
Q Consensus       109 ~~~~~~~~~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~~~~  175 (179)
                      ...+|++.+++.|++.|+.++.. |....+++.||.+++|+..++++....++|++++.+++..+.++
T Consensus       129 ~~~~s~~~~ialr~llGl~es~~wP~~~~~lg~wy~~~e~g~r~~~~~a~~~~g~i~ggliA~g~~~~  196 (495)
T KOG2533|consen  129 AAVHSFPGLIALRFLLGLFESGGWPGVVAILGNWYGKSERGLRMGIWYASASLGNIFGGLIAYGVFKL  196 (495)
T ss_pred             HHHhhhHHHHHHHHHHHHHhcccchHHHHHHHhhcChhhhhhhHHHHHHhcchhhHHHHHHHHHhhhh
Confidence            77999999999999999999999 99999999999999999999999999999999999999997653

>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]

Probab=99.63  E-value=1.1e-14  Score=108.68  Aligned_cols=150  Identities=17%  Similarity=0.192  Sum_probs=135.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhcchhcccCCCchhHHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHH
Q 030356           26 LVLIYAGLGLVAEAMEIMILSFIGPAIKSEWNLSPAQETLLTSVVFAGLLVGSYSWGFISDNYGRRKGLLGIAMLASVAG  105 (179)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~d~~G~r~~~~~~~~~~~~~~  105 (179)
                      .....+...++..+........+.|.+++.++++..|++.+...++.++.+.+++.|++.+|+|+|+-++.++.++++++
T Consensus        13 ~~~v~~t~lFfl~G~~~~l~diLip~l~~~f~ls~~~a~liqfaff~gYf~~~lpa~~~~kk~gyk~gi~lgL~l~avg~   92 (422)
T COG0738          13 LAFVLLTSLFFLWGFITCLNDILIPHLKEVFDLTYFEASLIQFAFFGGYFIMSLPAGLLIKKLGYKAGIVLGLLLYAVGA   92 (422)
T ss_pred             eHHHHHHHHHHHHHHHhhcchhhHHHHHHHhCccHHHHHHHHHHHHHHHHHHhccHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence            34445555567777777788889999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHH---HHHHHHHHHHHHHHHHhhcCch-hhHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 030356          106 LLSA---FSLNYLSLVTLRGLVGIGLGSG-PVCLSWFLEFIPASNRGMWMVVISIFWTLGTIFEAALAWGNILL  175 (179)
Q Consensus       106 ~~~~---~~~~~~~~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~~~~  175 (179)
                      .++.   ...++..+++.-++.|.|.+.. +..+++++...|++.-..-+++.+...++|..++|+++++++..
T Consensus        93 ~lF~pAa~~~~y~~FL~~lFila~Gi~~LetaaNp~v~~lg~~~~a~~rlnl~q~fn~lGa~~gp~~g~~lils  166 (422)
T COG0738          93 ALFWPAASSKSYGFFLVALFILASGIGLLETAANPYVTLLGKPESAAFRLNLAQAFNGLGAILGPLLGSSLILS  166 (422)
T ss_pred             HHHhhhhhhhhHHHHHHHHHHHHhhhHHHHhccchHHHHhCCchhHHHHHHHHHHhhhhHHHHHHHHHHHHHHh
Confidence            8874   4568888899999999999998 99999999999999999999999999999999999999998863

>PRK10489 enterobactin exporter EntS; Provisional

Probab=99.63  E-value=2.5e-14  Score=110.23  Aligned_cols=130  Identities=19%  Similarity=0.136  Sum_probs=112.1

Q ss_pred             hhcchhcc-cCCCchhHHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 030356           48 IGPAIKSE-WNLSPAQETLLTSVVFAGLLVGSYSWGFISDNYGRRKGLLGIAMLASVAGLLSAFSLNYLSLVTLRGLVGI  126 (179)
Q Consensus        48 ~~~~~~~~-~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~d~~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~  126 (179)
                      ..|.+.++ +|.++.+.+++.+...++..++.++.+++.||.++++.+..+....+++.++..+.++.....+..++.|+
T Consensus       245 ~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  324 (417)
T PRK10489        245 LYPALADEVWQMGAAQIGLLYAAVPLGAALGALTSGWLAHSARPGLLMLLSTLGSFLAVGLFGLMPMWILAVLCLALFGY  324 (417)
T ss_pred             hhHHHHHhccCCChhHhHHHHHHHHHHHHHHHHHHHHhhhccCcchHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHH
Confidence            44555555 89999999999999999999999999999999888888888887777777777777777777778888898


Q ss_pred             hcCch-hhHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Q 030356          127 GLGSG-PVCLSWFLEFIPASNRGMWMVVISIFWTLGTIFEAALAWGNILLNS  177 (179)
Q Consensus       127 ~~g~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~~~~~~  177 (179)
                      +.+.. +...+++.|..|++.|++++++++....+|..++|.+.+++.+..+
T Consensus       325 ~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~l~G~l~~~~g  376 (417)
T PRK10489        325 LSAISSLLQYTLLQTQTPDEMLGRINGLWTAQNVTGDAIGAALLGGLGAMMT  376 (417)
T ss_pred             HHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHhc
Confidence            88776 6667888999999999999999999999999999999999998654

>PRK11010 ampG muropeptide transporter; Validated

Probab=99.62  E-value=3e-14  Score=112.04  Aligned_cols=140  Identities=23%  Similarity=0.223  Sum_probs=115.7

Q ss_pred             HHHHHHHHHHHHHhhhcchhcccCCCchhHHHHHHHHHHHHHHHHHHHhhhhccc-----cchhH-HHHHHHHHHHHHHH
Q 030356           34 GLVAEAMEIMILSFIGPAIKSEWNLSPAQETLLTSVVFAGLLVGSYSWGFISDNY-----GRRKG-LLGIAMLASVAGLL  107 (179)
Q Consensus        34 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~d~~-----G~r~~-~~~~~~~~~~~~~~  107 (179)
                      ..+..+..........|.+.++.|.|.++.+.. +.....+ ++++++|+++||+     |||+. ++.+.+..+++...
T Consensus        20 l~~~~gl~~~~~~~~l~~~l~~~g~~~~~ig~~-~~~~~~~-~~~~l~gpl~Dr~~~~~~Grrr~~ll~~~i~~~~~~~~   97 (491)
T PRK11010         20 LGFASGLPLALTSGTLQAWMTVENIDLKTIGFF-SLVGQAY-VFKFLWSPLMDRYTPPFLGRRRGWLLATQLLLLVAIAA   97 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHH-HHHHHHH-HHHHHHHHHHHcccccCCCCchHHHHHHHHHHHHHHHH
Confidence            345566666777788888899999999999986 3444444 6899999999999     99986 55667777677666


Q ss_pred             HHHH---HHHHHHHHHHHHHHhhcCch-hhHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 030356          108 SAFS---LNYLSLVTLRGLVGIGLGSG-PVCLSWFLEFIPASNRGMWMVVISIFWTLGTIFEAALAWGNILL  175 (179)
Q Consensus       108 ~~~~---~~~~~~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~~~~  175 (179)
                      +++.   ++++.+.+.+++.+++.+.. +...++..|++|+|+|+++.++...+..+|..+++.++.++.+.
T Consensus        98 ~a~~~~~~~l~~l~~~~~l~~~~~a~~~i~~~a~~~~~~~~~~rg~~~~i~~~g~~lG~llg~~l~~~l~~~  169 (491)
T PRK11010         98 MGFLEPGTQLRWLAALAVVIAFCSASQDIVFDAWKTDVLPAEERGAGAAISVLGYRLAMLVSGGLALWLADR  169 (491)
T ss_pred             HHHcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            6664   46778888899999998887 88899999999999999999999999999999999999998873

>PRK09528 lacY galactoside permease; Reviewed

Probab=99.62  E-value=1.3e-14  Score=111.94  Aligned_cols=122  Identities=16%  Similarity=0.031  Sum_probs=107.3

Q ss_pred             cCCCchhHHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCch-hhH
Q 030356           56 WNLSPAQETLLTSVVFAGLLVGSYSWGFISDNYGRRKGLLGIAMLASVAGLLSAFSLNYLSLVTLRGLVGIGLGSG-PVC  134 (179)
Q Consensus        56 ~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~d~~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~-~~~  134 (179)
                      .+.+..+.+.+.++..++..++.++.|++.||+|+|+.+..+.++.++..++..+.++.+.++..+++.|++.+.. +..
T Consensus       257 ~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~l~g~~~~~~~~~~  336 (420)
T PRK09528        257 PEQGTRVFGYLNSFQVFLEALIMFFAPFIINRIGAKNALLLAGTIMAVRIIGSGFATGPLEVSILKLLHAFEVPFLLVGV  336 (420)
T ss_pred             cCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHH
Confidence            3567778899999999999999999999999999999999988888888888888888888888899999888776 667


Q ss_pred             HHHHHHhccccchhHHHHH-HHHHHHHHHHHHHHHHHHHhccCC
Q 030356          135 LSWFLEFIPASNRGMWMVV-ISIFWTLGTIFEAALAWGNILLNS  177 (179)
Q Consensus       135 ~~~~~~~~~~~~r~~~~~~-~~~~~~~g~~~~~~i~~~~~~~~~  177 (179)
                      ..++.|.+|++.|++..+. ++....+|..++|.+.+++.+..|
T Consensus       337 ~~~~~~~~~~~~~a~~~~~~~~~~~~lg~~ig~~~~G~l~~~~G  380 (420)
T PRK09528        337 FKYITLNFDVRLSATIYLVGFQFAKQLGAVFLSTLAGNLYDSIG  380 (420)
T ss_pred             HHHHHHHcCccceeeeeeehHHHHHHHHHHHHHHHHHHHHHhhC
Confidence            7888999999999988766 788899999999999999998654

>PRK09556 uhpT sugar phosphate antiporter; Reviewed

Probab=99.62  E-value=3.6e-14  Score=110.90  Aligned_cols=144  Identities=17%  Similarity=0.088  Sum_probs=104.5

Q ss_pred             HHHHHHHHHHHHHHHHhhhc-chhcccCCCchhHHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHHH--
Q 030356           31 AGLGLVAEAMEIMILSFIGP-AIKSEWNLSPAQETLLTSVVFAGLLVGSYSWGFISDNYGRRKGLLGIAMLASVAGLL--  107 (179)
Q Consensus        31 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~d~~G~r~~~~~~~~~~~~~~~~--  107 (179)
                      ..+..++............| ++.+++|.|..+.++..+...++..++.++.|+++||+|||+.++.......+....  
T Consensus       263 ~~~~~~~~~~~~~~~~~~~p~yl~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~g~r~~~~~~~~~~~~~~~~~~  342 (467)
T PRK09556        263 LCFANIFLYIVRIGIDNWSPVYAFQELGFSKEDAINTFTLFEIGALVGSLLWGWLSDLANGRRALVACIALALIIFTLGV  342 (467)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHHHH
Confidence            33334444443434444455 455679999999999999999999999999999999999998876654443333222  


Q ss_pred             HHHHHHHHHHHHHHHHHHhhcCch-hhHHHHHHHhccccchhHHHHHHHHHHHH-HHHHHHHHHHHHhc
Q 030356          108 SAFSLNYLSLVTLRGLVGIGLGSG-PVCLSWFLEFIPASNRGMWMVVISIFWTL-GTIFEAALAWGNIL  174 (179)
Q Consensus       108 ~~~~~~~~~~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~-g~~~~~~i~~~~~~  174 (179)
                      ....++.....+..++.|++.... ........|.+|+++|+++.++.+....+ |..++|.+.+++.+
T Consensus       343 ~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~p~~~~g~a~gi~~~~g~l~g~~~~~~~~G~i~~  411 (467)
T PRK09556        343 YQHATSEYMYLASLFALGFLVFGPQLLIGVAAVGFVPKKAIGVANGIKGTFAYLFGDSFAKVGLGMIAD  411 (467)
T ss_pred             HHhcCcHHHHHHHHHHHHHHHhhHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhHHHHhhhHHHHhc
Confidence            222345555566777788654333 33346677999999999999999988886 77999999999998

>PRK11902 ampG muropeptide transporter; Reviewed

Probab=99.62  E-value=3.7e-14  Score=108.86  Aligned_cols=141  Identities=20%  Similarity=0.109  Sum_probs=118.1

Q ss_pred             HHHHHHHHHHHHHhhhcchhcccCCCchhHHHHHHHHHHHHHHHHHHHhhhhccc-----cchh-HHHHHHHHHHHHHHH
Q 030356           34 GLVAEAMEIMILSFIGPAIKSEWNLSPAQETLLTSVVFAGLLVGSYSWGFISDNY-----GRRK-GLLGIAMLASVAGLL  107 (179)
Q Consensus        34 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~d~~-----G~r~-~~~~~~~~~~~~~~~  107 (179)
                      .++.++.........+|.+.++.|.|.+|.|++..+...  .+..+++|+++||+     |||| .++.+.+..++....
T Consensus         7 l~~~~~~~~~~~~~~~~~~l~~~g~~~~~ig~~~~~~~~--~~~~~l~g~~~Dr~~~~~~g~rr~~l~~~~~~~~l~~~~   84 (402)
T PRK11902          7 LGFASGLPLALTSGTLQAWMTVEGLDIQTIGFFSLVGQA--YIFKFLWAPLMDRYTPPLLGRRRGWLLLTQVGLAASIAA   84 (402)
T ss_pred             HHHHHhhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH--HHHHHHHHHHHHcccccCCCcchhHHHHHHHHHHHHHHH
Confidence            356677777788888899999999999999999777765  69999999999999     8876 677777787777777


Q ss_pred             HHHH---HHHHHHHHHHHHHHhhcCch-hhHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHHHhccC
Q 030356          108 SAFS---LNYLSLVTLRGLVGIGLGSG-PVCLSWFLEFIPASNRGMWMVVISIFWTLGTIFEAALAWGNILLN  176 (179)
Q Consensus       108 ~~~~---~~~~~~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~~~~~  176 (179)
                      +.+.   .+++.+++..++.+...+.. +...+++.|++|+|+|+++.++...+..+|..+++.++..+.+..
T Consensus        85 l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~al~~~~~~~~~r~~~~~~~~~g~~~g~i~g~~l~~~l~~~~  157 (402)
T PRK11902         85 MAFCPPHAALWPLAGLAVLVAFLSASQDIVFDAYSTDVLHPEERGAGAAVKVLGYRLAMLVSGGLALWLADRV  157 (402)
T ss_pred             HHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhhHHHHHHHHHHHHHHHHHhHHHHHHHhcc
Confidence            6665   34666777777778777777 888999999999999999999999999999999999998888753

>KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism]

Probab=99.62  E-value=2e-15  Score=114.08  Aligned_cols=150  Identities=19%  Similarity=0.397  Sum_probs=122.8

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhccc-C-------CCchhHHHHHHHHHHHHHHHHHHHhhhhccccchh
Q 030356           21 GKFQILVLIYAGLGLVAEAMEIMILSFIGPAIKSEW-N-------LSPAQETLLTSVVFAGLLVGSYSWGFISDNYGRRK   92 (179)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-------~s~~~~~~~~~~~~~~~~i~~~~~g~l~d~~G~r~   92 (179)
                      +++..+.+.+..++++.+.++.+.++...|.+...+ |       .+....+.+..+..+|.++|+++.|++.||+|||+
T Consensus        36 qw~~fk~i~iAG~GfftDsYDlF~I~lVt~il~~lY~~~~~~~g~~ps~i~~~Vn~~A~vGti~GQl~FG~lgD~~GRK~  115 (538)
T KOG0252|consen   36 QWKHFKAIIIAGMGFFTDSYDLFSISLVTKILGYLYYHGDESGGHYPSGVLALVNAAALVGTIFGQLFFGWLGDKFGRKK  115 (538)
T ss_pred             hHHHHHHHHHhhhhhcccchhhhhHHHHHHHHHHHhcCCCCCCCcCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhcchh
Confidence            566677888899999999999999998887665442 2       34556789999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHhhcCch-hhHHHHHHHhccccchhHHHHHHHHHHHHHHHH
Q 030356           93 GLLGIAMLASVAGLLSAFSL-------NYLSLVTLRGLVGIGLGSG-PVCLSWFLEFIPASNRGMWMVVISIFWTLGTIF  164 (179)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~  164 (179)
                      ++...++++++++++++++.       -..++.+.|++.|+|.|+- |...+..+|....+.||...+......++|...
T Consensus       116 vYG~~liImIi~t~~~~~s~~~~~~~~~m~~L~~~R~~LGiGIGGDYPlSAtI~SE~an~~~RGa~iaavFa~Qg~Gila  195 (538)
T KOG0252|consen  116 VYGKELIIMIICSALSGLSVGTTSPLGVMMTLCFFRFLLGIGIGGDYPLSATIMSESANKKTRGAFIAAVFAMQGFGILA  195 (538)
T ss_pred             hhhHHHHHHHHHHHHhccCCCCCCCcchhhHHHHHHHHhhccccCCCcchHHHhhhhhhhccccceeEEEEEecchhHhh
Confidence            99999999999998766532       2467788999999999998 888899999999999999988865555555544


Q ss_pred             HHHHHH
Q 030356          165 EAALAW  170 (179)
Q Consensus       165 ~~~i~~  170 (179)
                      |..++.
T Consensus       196 G~ivt~  201 (538)
T KOG0252|consen  196 GGIVAL  201 (538)
T ss_pred             ccHHHH
Confidence            444433

>TIGR00880 2_A_01_02 Multidrug resistance protein

Probab=99.61  E-value=3.1e-15  Score=97.68  Aligned_cols=110  Identities=22%  Similarity=0.227  Sum_probs=99.7

Q ss_pred             HHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCch-hhHHHHHHHhccccc
Q 030356           68 SVVFAGLLVGSYSWGFISDNYGRRKGLLGIAMLASVAGLLSAFSLNYLSLVTLRGLVGIGLGSG-PVCLSWFLEFIPASN  146 (179)
Q Consensus        68 ~~~~~~~~i~~~~~g~l~d~~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~  146 (179)
                      +...++..+++++.|++.||+|||+.+..+.....++.+.....++++.+.+.+++.|++.+.. +....++.|.+|+++
T Consensus         5 ~~~~~~~~~~~~~~g~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~   84 (141)
T TIGR00880         5 AGYALGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALSSNITVLIIARFLQGFGAAFALVAGAALIADIYPPEE   84 (141)
T ss_pred             EeehhHHHHHHhhHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHCChhh
Confidence            4567788899999999999999999999998888888888888888888899999999999887 888899999999999


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Q 030356          147 RGMWMVVISIFWTLGTIFEAALAWGNILLNS  177 (179)
Q Consensus       147 r~~~~~~~~~~~~~g~~~~~~i~~~~~~~~~  177 (179)
                      |++..++.+....+|..++|.+.+.+.+..+
T Consensus        85 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~  115 (141)
T TIGR00880        85 RGVALGLMSAGIALGPLLGPPLGGVLAQFLG  115 (141)
T ss_pred             hhHHHHHHHHhHHHHHHHhHHhHHHHhcccc
Confidence            9999999999999999999999999887543

>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins

Probab=99.61  E-value=2.1e-14  Score=113.60  Aligned_cols=137  Identities=19%  Similarity=0.178  Sum_probs=115.4

Q ss_pred             HHHHHHHHHhhhcchhcccCCCchhHHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030356           38 EAMEIMILSFIGPAIKSEWNLSPAQETLLTSVVFAGLLVGSYSWGFISDNYGRRKGLLGIAMLASVAGLLSAFSLNYLSL  117 (179)
Q Consensus        38 ~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~d~~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~  117 (179)
                      .+.........++++.+|+|- .+...|+.+...++..+.+++.|+++|.+|||..++.+.++..++.+.++.++|...+
T Consensus        56 ~~~~~~~~a~~l~~I~~diG~-~~~~~w~~~~~~l~~av~~~~~G~LSDlfGRr~~~i~g~~l~vvG~Iv~atA~~~~~~  134 (599)
T PF06609_consen   56 AYFVLVLPASILPYINADIGG-SDNWSWFSTAWTLASAVSFPFVGRLSDLFGRRYFFIIGSLLGVVGSIVCATAQNMNTF  134 (599)
T ss_pred             HHHHHhccHHHHHHHHHhcCC-CccchHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHhHHHHhhcCCcHHHH
Confidence            344444445667888899984 4778889999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhcCchhhHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 030356          118 VTLRGLVGIGLGSGPVCLSWFLEFIPASNRGMWMVVISIFWTLGTIFEAALAWGNILL  175 (179)
Q Consensus       118 ~~~~~l~G~~~g~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~~~~  175 (179)
                      +.+..+.|++.|........++|..|.|.|..+..+...........+|.++..+...
T Consensus       135 iag~~l~GvgaG~~~~~~~~isEl~p~k~R~~~~~~~~~~~i~~~~~~~~ia~~~~~~  192 (599)
T PF06609_consen  135 IAGMVLYGVGAGVQELAALAISELVPNKWRGLGLAIASIPFIITTWISPLIAQLFAAH  192 (599)
T ss_pred             HHHHHHHHHhhHHHHHHHHHHHHhcccchhhhHhHHHHHHHHhhhcccHHHHHHhccC
Confidence            9999999999776655566689999999999888877776666666778888766543

Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].

>PRK11128 putative 3-phenylpropionic acid transporter; Provisional

Probab=99.61  E-value=4.7e-14  Score=107.57  Aligned_cols=127  Identities=12%  Similarity=-0.104  Sum_probs=109.2

Q ss_pred             cchhcccCCCchhHHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 030356           50 PAIKSEWNLSPAQETLLTSVVFAGLLVGSYSWGFISDNYGRRKGLLGIAMLASVAGLLSAFSLNYLSLVTLRGLVGIGLG  129 (179)
Q Consensus        50 ~~~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~d~~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~g  129 (179)
                      |.+.+|.|.++.+.+.+.+...++..+..++.|++.||+|+|+.+..+.+..++..+.....++.+.+++..++.|++.+
T Consensus       229 ~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~  308 (382)
T PRK11128        229 AIYWQAAGYSASTIGYLWSLGVVAEVLIFAFSNRLFRRWSARDLLLLSAICGVVRWGLMGSTTALPWLIVIQILHCGTFT  308 (382)
T ss_pred             HHHHHHCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Confidence            44546789999999999999999999999999999999999999999998888888778888888888889999999988


Q ss_pred             ch-hhHHHHHHHhccccchhHHHHHHH-HHHHHHHHHHHHHHHHHhccCC
Q 030356          130 SG-PVCLSWFLEFIPASNRGMWMVVIS-IFWTLGTIFEAALAWGNILLNS  177 (179)
Q Consensus       130 ~~-~~~~~~~~~~~~~~~r~~~~~~~~-~~~~~g~~~~~~i~~~~~~~~~  177 (179)
                      .. +....++.+. +++++++..+.++ ....+|..++|.+++.+.|..+
T Consensus       309 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~ig~~i~G~l~~~~g  357 (382)
T PRK11128        309 VCHLAAMRYIAAR-PGSEVIRLQALYSALAMGGSIAIMTVLSGFLYQHLG  357 (382)
T ss_pred             HHHHHHHHHHHHC-CHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            87 7777777776 6667789999876 6667888999999999998764

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=99.61  E-value=3.7e-14  Score=121.33  Aligned_cols=150  Identities=11%  Similarity=0.001  Sum_probs=111.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhc-chhcccCCCc-hhHHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHH---HHHHH
Q 030356           28 LIYAGLGLVAEAMEIMILSFIGP-AIKSEWNLSP-AQETLLTSVVFAGLLVGSYSWGFISDNYGRRKGLLGI---AMLAS  102 (179)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~s~-~~~~~~~~~~~~~~~i~~~~~g~l~d~~G~r~~~~~~---~~~~~  102 (179)
                      +...++..+.+.+.......... .+..+.+.+. ...++..+++.+.+.+.+++.|+++||+|||+++...   .+...
T Consensus        17 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~G~laDr~~rk~~~~~~~~~~~~~~   96 (1140)
T PRK06814         17 FWTQFFGAFNDNFLKNALVILILYGLSGALGAYNNALVTLAGAVFILPFFIFSALAGQLADKYDKAKLAKILKFAEIGIA   96 (1140)
T ss_pred             HHHHHHhHHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHhhhHHhhhhhccHHHHHHHHHHHHHHHH
Confidence            33444444444444444333332 3333333333 4578888999999999999999999999999976432   22222


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhcCch-hhHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Q 030356          103 VAGLLSAFSLNYLSLVTLRGLVGIGLGSG-PVCLSWFLEFIPASNRGMWMVVISIFWTLGTIFEAALAWGNILLNS  177 (179)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~~~~~~  177 (179)
                      +........++++.+++.|+++|++.+.. +...+++.+++|+++|++++++.+.+..+|..++|.+++++.+..+
T Consensus        97 ~~~~~~~~~~s~~~l~~~~~l~gi~~a~~~p~~~a~l~~~~~~~~~~~a~~~~~~~~~ig~~igp~l~g~l~~~~~  172 (1140)
T PRK06814         97 ALAIYGFHLNSVPLLFAALFLMGIHSALFGPIKYSILPDHLNKDELLGANALVEAGTFIAILLGTIIGGLATISGN  172 (1140)
T ss_pred             HHHHHHHHHhhHHHHHHHHHHHHHHHHhhchHHHHhhHhhcCccccchhhHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            22222233478999999999999999988 9999999999999999999999999999999999999999987654

>PRK03699 putative transporter; Provisional

Probab=99.61  E-value=3.2e-14  Score=108.91  Aligned_cols=141  Identities=14%  Similarity=0.045  Sum_probs=109.5

Q ss_pred             HHHHHHHHHHHhhhcchh-cccCCCchhHHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHHHHHHHHHH
Q 030356           36 VAEAMEIMILSFIGPAIK-SEWNLSPAQETLLTSVVFAGLLVGSYSWGFISDNYGRRKGLLGIAMLASVAGLLSAFSLNY  114 (179)
Q Consensus        36 ~~~~~~~~~~~~~~~~~~-~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~d~~G~r~~~~~~~~~~~~~~~~~~~~~~~  114 (179)
                      ++............|.+. +++|.|+.+.+.+.+.+.++..+++++.|+++||++||+.+.....+..+...+....++.
T Consensus       215 ~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~~~~~~  294 (394)
T PRK03699        215 LLYILAQLTFISWVPEYAQKKFGMSLEDAGNLVSNFWMAYMVGMWIFSFIVRFFDLQRILTVLAGLALVLMYLFVNTDDP  294 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHcCCChHHhhHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHcCCc
Confidence            333333333444455555 6689999999999999999999999999999999999999888777766666666566666


Q ss_pred             HHHHHHHHHHHhhcCch-hhHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Q 030356          115 LSLVTLRGLVGIGLGSG-PVCLSWFLEFIPASNRGMWMVVISIFWTLGTIFEAALAWGNILLNS  177 (179)
Q Consensus       115 ~~~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~~~~~~  177 (179)
                      ..+.+..++.|++.+.. +...+...|..| +++++..+.......+|..++|.+.+++.+..+
T Consensus       295 ~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~i~p~~~G~l~~~~g  357 (394)
T PRK03699        295 SHLLYAILGLGFFSSAIYTTIITLGSQQTK-VASPKLVNFILTCGTIGTMLTFVVTSPIVAHFG  357 (394)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-CCCHHHHHHHHHhhhHHHHHHHHHHHHHHHHhC
Confidence            66666778888877766 666677777766 456778888888889999999999999988654

>PRK12382 putative transporter; Provisional

Probab=99.61  E-value=4.6e-14  Score=107.85  Aligned_cols=129  Identities=13%  Similarity=0.053  Sum_probs=107.7

Q ss_pred             hhhcchhcccCCCchhHHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 030356           47 FIGPAIKSEWNLSPAQETLLTSVVFAGLLVGSYSWGFISDNYGRRKGLLGIAMLASVAGLLSAFSLNYLSLVTLRGLVGI  126 (179)
Q Consensus        47 ~~~~~~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~d~~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~  126 (179)
                      .+.+.+.++.+.+  +.+.......++..+++++.|++.||+|+|+.+..+..+.+++.++..+.++.....+..++.|+
T Consensus       237 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~  314 (392)
T PRK12382        237 TFVSLYFASKGWA--MAGFTLTAFGGAFVLMRVLFGWMPDRFGGVKVAIVSLLVETVGLLLLWLAPTAWVALAGAALTGA  314 (392)
T ss_pred             HHHHHHHHhcCCc--hhHHHHHHHHHHHHHHHHHHHHHHHhcCCCeehHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence            3334444555554  34566677888889999999999999999999998888888888777777777777788899999


Q ss_pred             hcCch-hhHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Q 030356          127 GLGSG-PVCLSWFLEFIPASNRGMWMVVISIFWTLGTIFEAALAWGNILLNS  177 (179)
Q Consensus       127 ~~g~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~~~~~~  177 (179)
                      +.+.. +.....+.|.+|+++|+++.++++....+|..++|.+.+++.+..+
T Consensus       315 ~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~ig~~~~g~l~~~~g  366 (392)
T PRK12382        315 GCSLIFPALGVEVVKRVPSQVRGTALGGYAAFQDIAYGVSGPLAGMLATSFG  366 (392)
T ss_pred             HHHhHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            98877 7778888999999999999999999999999999999999988654

>PRK15011 sugar efflux transporter B; Provisional

Probab=99.60  E-value=1.2e-13  Score=105.65  Aligned_cols=141  Identities=20%  Similarity=0.205  Sum_probs=100.1

Q ss_pred             HHHHHHHHHHHh-hhcchhcccCCCchhHHHHHHHHHH-HHHHHHHHHhhhhccccchhHHH-HHHHHHHHHHHHHHHHH
Q 030356           36 VAEAMEIMILSF-IGPAIKSEWNLSPAQETLLTSVVFA-GLLVGSYSWGFISDNYGRRKGLL-GIAMLASVAGLLSAFSL  112 (179)
Q Consensus        36 ~~~~~~~~~~~~-~~~~~~~~~~~s~~~~~~~~~~~~~-~~~i~~~~~g~l~d~~G~r~~~~-~~~~~~~~~~~~~~~~~  112 (179)
                      +..........+ ..+++.+|+|.|+++.+++.+...+ +..++.+..++ +||+||||.++ .+.+..++...+.++++
T Consensus        25 ~~~~~~~~~~~p~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~~~~-~dr~g~r~~~~~~~~~~~~~~~~~~~~~~  103 (393)
T PRK15011         25 FLTGIAGALQTPTLSIFLTDEVHARPAMVGFFFTGSAVIGILVSQFLAGR-SDKRGDRKSLIVFCCLLGVLACTLFAWNR  103 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHH-HhcccchhHHHHHHHHHHHHHHHHHHHhh
Confidence            334444333333 4455678899999999999876655 55555555555 99999998754 55565567777777888


Q ss_pred             HHHHHHHHHHHHHhhcCch-hhHHHHHHHhccccch--hHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Q 030356          113 NYLSLVTLRGLVGIGLGSG-PVCLSWFLEFIPASNR--GMWMVVISIFWTLGTIFEAALAWGNILLNS  177 (179)
Q Consensus       113 ~~~~~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~r--~~~~~~~~~~~~~g~~~~~~i~~~~~~~~~  177 (179)
                      +++.+++.+.+.+...+.. +....+..|+.+++.|  +...++.+...++|..++|++++++.+..|
T Consensus       104 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~i~~~l~~~~g  171 (393)
T PRK15011        104 NYFVLLFVGVFLSSFGSTANPQMFALAREHADKTGREAVMFSSFLRAQVSLAWVIGPPLAYALAMGFS  171 (393)
T ss_pred             HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcC
Confidence            8888766655555444455 7777788888776655  345678889999999999999999987654

>PRK09705 cynX putative cyanate transporter; Provisional

Probab=99.60  E-value=7.6e-14  Score=106.87  Aligned_cols=136  Identities=18%  Similarity=0.098  Sum_probs=105.0

Q ss_pred             HHHHHHhhhcchhcccCCCchhHHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHHHHHHHH-HHHHHHH
Q 030356           41 EIMILSFIGPAIKSEWNLSPAQETLLTSVVFAGLLVGSYSWGFISDNYGRRKGLLGIAMLASVAGLLSAFSL-NYLSLVT  119 (179)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~d~~G~r~~~~~~~~~~~~~~~~~~~~~-~~~~~~~  119 (179)
                      .+.......|.+.+++|.++.+.+...+.+.++..++++..|++.||+|||+.+..+..+..++.......+ +....  
T Consensus       220 ~~~~~~~~lp~~l~~~g~s~~~ag~~~~~~~i~~i~g~~~~g~l~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~--  297 (393)
T PRK09705        220 GYASLIAWLPAFYIEIGASAQYSGSLLALMTLGQAAGALLMPAMARHQDRRKLLMLALVLQLVGFCGFIWLPLQLPVL--  297 (393)
T ss_pred             HHHHHHHHHHHHHHHcCCChhhhhHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHccchHHHH--
Confidence            333344444555567899999999999999999999999999999999999998888777666665443322 22222  


Q ss_pred             HHHHHHhhcCch-hhHHHHHHHhcc-ccchhHHHHHHHHHHHHHHHHHHHHHHHHhccCCC
Q 030356          120 LRGLVGIGLGSG-PVCLSWFLEFIP-ASNRGMWMVVISIFWTLGTIFEAALAWGNILLNSK  178 (179)
Q Consensus       120 ~~~l~G~~~g~~-~~~~~~~~~~~~-~~~r~~~~~~~~~~~~~g~~~~~~i~~~~~~~~~~  178 (179)
                      ..++.|++.+.. +.......+..+ +++|++..++.+....++..++|.+.+++.+..|+
T Consensus       298 ~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~gp~~~G~l~~~~g~  358 (393)
T PRK09705        298 WAMVCGLGLGGAFPLCLLLALDHSVQPAIAGKLVAFMQGIGFIIAGLAPWFSGVLRSISGN  358 (393)
T ss_pred             HHHHHHHhccchHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence            234567877777 766666677775 67899999999999999999999999999998764

>TIGR00893 2A0114 d-galactonate transporter

Probab=99.60  E-value=4.1e-14  Score=107.17  Aligned_cols=142  Identities=16%  Similarity=0.097  Sum_probs=98.7

Q ss_pred             HHHHHHHHHHHHhhhcch-hcccCCCchhHHHHHHHHHHHHHHHHHHHhhhhccccchh--HHHH------HHHHHHHHH
Q 030356           35 LVAEAMEIMILSFIGPAI-KSEWNLSPAQETLLTSVVFAGLLVGSYSWGFISDNYGRRK--GLLG------IAMLASVAG  105 (179)
Q Consensus        35 ~~~~~~~~~~~~~~~~~~-~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~d~~G~r~--~~~~------~~~~~~~~~  105 (179)
                      .+.............|.+ .+++|.++.+.+++.+...++..++.++.|++.||+|||+  ....      +.....+..
T Consensus       224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  303 (399)
T TIGR00893       224 QFLVNIGLGFFLTWFPTYLVQERGLSILEAGFMASLPGIVGFIGMILGGRLSDLLLRRGKSLVFARKTAIIAGLVLSLLM  303 (399)
T ss_pred             HHHHHhHHHHHHHHHHHHHHHHhcccHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHH
Confidence            333444444444444544 5568999999999999999999999999999999999996  1111      111111111


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhcCch-hhHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Q 030356          106 LLSAFSLNYLSLVTLRGLVGIGLGSG-PVCLSWFLEFIPASNRGMWMVVISIFWTLGTIFEAALAWGNILLNS  177 (179)
Q Consensus       106 ~~~~~~~~~~~~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~~~~~~  177 (179)
                      ......++.........+.+.+.+ . +...+++.|.+|+++|+++.++.+....+|..++|.+.+++.+..+
T Consensus       304 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~i~g~l~~~~g  375 (399)
T TIGR00893       304 FATNYVNIPYAALALVALGFFGLG-AGAIGWALISDNAPGNIAGLTGGLINSLGNLGGIVGPIVIGAIAATTG  375 (399)
T ss_pred             HHhccchhHHHHHHHHHHHHhchh-hhhHHHHHHHhhcChhHHHHHHHHHHHHHHHhhhhhhHHhhhhccCCC
Confidence            111112233333333444444444 5 8888999999999999999999999999999999999999998765

>TIGR00901 2A0125 AmpG-related permease

Probab=99.60  E-value=2.8e-14  Score=107.69  Aligned_cols=133  Identities=17%  Similarity=0.137  Sum_probs=107.4

Q ss_pred             HHHHhhhcchhcccCCCchhHHHHHHHHHHHHHHHHHHHhhhhccc-----cchhHH-HHHHHHHHHHHHHHHHH---HH
Q 030356           43 MILSFIGPAIKSEWNLSPAQETLLTSVVFAGLLVGSYSWGFISDNY-----GRRKGL-LGIAMLASVAGLLSAFS---LN  113 (179)
Q Consensus        43 ~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~d~~-----G~r~~~-~~~~~~~~~~~~~~~~~---~~  113 (179)
                      ....+..|.+.+|+|.|.+|.++.... .+...+ .+++|++.||+     ||||.+ +.+.+..++.....++.   .+
T Consensus         5 ~~~~~~~~~~~~~~g~s~~~~g~~~~~-~~~~~~-~~~~g~~~Dr~~~~~~Grr~~~l~~~~~~~~~~~~~l~~~~~~~~   82 (356)
T TIGR00901         5 GLVGNTLPYWLRSKNVSLKTIGFFSLV-GLPYSL-KFLWSPLVDTVYLPFFGRRRSWLVLTQVLLLSLLLILSFLVPSTD   82 (356)
T ss_pred             hhHHhHHHHHHHHcCCCHHHHHHHHHH-HHHHHH-HHHHHHHHhcccCCCCCccHHHHHHHHHHHHHHHHHHHcCCcchh
Confidence            344566788999999999999999755 555554 99999999998     899974 56666666666666655   35


Q ss_pred             HHHHHHHHHHHHhhcCch-hhHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Q 030356          114 YLSLVTLRGLVGIGLGSG-PVCLSWFLEFIPASNRGMWMVVISIFWTLGTIFEAALAWGNILLNS  177 (179)
Q Consensus       114 ~~~~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~~~~~~  177 (179)
                      .+.+....++.+.+.+.. +...+++.|++|+|+|+++.++...+..+|..+++.+++.+.+..+
T Consensus        83 l~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~g  147 (356)
T TIGR00901        83 LPLLAGLAFLIAFFSATQDIALDAWRLEILSDEELGYGSTIYIVGYRAGMLLSGSLALVLASPEF  147 (356)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhchHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence            555666777788877777 8889999999999999999999999999999999999998887654

>PRK09874 drug efflux system protein MdtG; Provisional

Probab=99.59  E-value=1.2e-13  Score=105.77  Aligned_cols=115  Identities=17%  Similarity=0.150  Sum_probs=100.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCch-hhHHHHHHHh
Q 030356           63 ETLLTSVVFAGLLVGSYSWGFISDNYGRRKGLLGIAMLASVAGLLSAFSLNYLSLVTLRGLVGIGLGSG-PVCLSWFLEF  141 (179)
Q Consensus        63 ~~~~~~~~~~~~~i~~~~~g~l~d~~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~-~~~~~~~~~~  141 (179)
                      .+.+.++..++..++.+..|++.||+|||+.+..+.....+..+...+.++.+.+++.+++.|++.+.. +...+.+.+.
T Consensus       260 ~g~~~~~~~l~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~  339 (408)
T PRK09874        260 SGMIASVPGVAALLSAPRLGKLGDRIGPEKILITALIFSVLLLIPMSFVQTPLQLGILRFLLGAADGALLPAVQTLLVYN  339 (408)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhHhhHHHHHHHHHHh
Confidence            456677778888999999999999999999999888887777777777777777888899999999888 8888888899


Q ss_pred             ccccchhHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Q 030356          142 IPASNRGMWMVVISIFWTLGTIFEAALAWGNILLNS  177 (179)
Q Consensus       142 ~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~~~~~~  177 (179)
                      .|+++|++.+++++....+|..++|.+++++.+..+
T Consensus       340 ~~~~~~g~~~~~~~~~~~~g~~~gp~~~G~l~~~~g  375 (408)
T PRK09874        340 SSNQIAGRIFSYNQSFRDIGNVTGPLMGAAISANYG  375 (408)
T ss_pred             CCcccceeeehHHHHHHHHHHHhhHHHHHHHHhhcc
Confidence            999999999999999999999999999999987654

>PRK03633 putative MFS family transporter protein; Provisional

Probab=99.59  E-value=6.5e-14  Score=106.75  Aligned_cols=128  Identities=13%  Similarity=0.154  Sum_probs=104.0

Q ss_pred             hhhcchhcccCCCchhHHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 030356           47 FIGPAIKSEWNLSPAQETLLTSVVFAGLLVGSYSWGFISDNYGRRKGLLGIAMLASVAGLLSAFSLNYLSLVTLRGLVGI  126 (179)
Q Consensus        47 ~~~~~~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~d~~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~  126 (179)
                      .+.|.+.++.|.++++.+...+...++..+++++.|++.||+|+|+++..+.....++.....  + ........++.|+
T Consensus       221 ~~lp~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~--~-~~~~~~~~~l~g~  297 (381)
T PRK03633        221 GLMPLYLNHQGMSDASIGFWMALLVSAGILGQWPIGRLADRFGRLLVLRVQVFVVILGSIAML--S-QAAMAPALFILGA  297 (381)
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHcCcHHHHHHHHHHHHHHHHHHh--h-hHHHHHHHHHHHH
Confidence            345666677899999999999999999999999999999999999999888777766655433  2 2223345666777


Q ss_pred             hcCch-hhHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Q 030356          127 GLGSG-PVCLSWFLEFIPASNRGMWMVVISIFWTLGTIFEAALAWGNILLNS  177 (179)
Q Consensus       127 ~~g~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~~~~~~  177 (179)
                      +.... +.....+.|..|+++++...+.++...++|..++|.+++++.+.++
T Consensus       298 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~igp~~~G~l~~~~g  349 (381)
T PRK03633        298 AGFTLYPVAMAWACEKVEHHELVAMNQALLLSYTVGSLLGPSFTAMLMQNYS  349 (381)
T ss_pred             HHHhHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            66666 8888888999999888888888889999999999999999988765

>PRK09952 shikimate transporter; Provisional

Probab=99.59  E-value=2.2e-13  Score=105.75  Aligned_cols=130  Identities=15%  Similarity=0.061  Sum_probs=97.6

Q ss_pred             hhhcchhcccCCCchhHHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHHHHHH---H-HHHHHHHHHHH
Q 030356           47 FIGPAIKSEWNLSPAQETLLTSVVFAGLLVGSYSWGFISDNYGRRKGLLGIAMLASVAGLLSAF---S-LNYLSLVTLRG  122 (179)
Q Consensus        47 ~~~~~~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~d~~G~r~~~~~~~~~~~~~~~~~~~---~-~~~~~~~~~~~  122 (179)
                      +..+++.+++|.++++...+.....+...++.++.|+++||+|||+.+..+.++..+..+....   . ++...+.+..+
T Consensus       272 ~~~~y~~~~~g~s~~~~~~~~~~~g~~~~i~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  351 (438)
T PRK09952        272 FALNYSTQNLGLPRELFLNIGLLVGGLSCLTIPCFAWLADRFGRRRVYITGALIGTLSAFPFFMALEAQSIFWIVFFSIM  351 (438)
T ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence            3334555678888877666666777788889999999999999999988877665554433322   1 22333344556


Q ss_pred             HHHhhcCch-hhHHHHHHHhccccchhHHHHH-HHHHHHHHHHHHHHHHHHHhccC
Q 030356          123 LVGIGLGSG-PVCLSWFLEFIPASNRGMWMVV-ISIFWTLGTIFEAALAWGNILLN  176 (179)
Q Consensus       123 l~G~~~g~~-~~~~~~~~~~~~~~~r~~~~~~-~~~~~~~g~~~~~~i~~~~~~~~  176 (179)
                      +.+++.+.. +...+++.|.+|++.|+++.++ ++.+..+|+.++|.+.+++.+.+
T Consensus       352 l~~~~~~~~~~~~~~~~~e~~p~~~r~tg~g~~~~~~~~lgg~~~p~i~g~l~~~~  407 (438)
T PRK09952        352 LANIAHDMVVCVQQPMFTEMFGASYRYSGAGVGYQVASVVGGGFTPFIAAALVTYF  407 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHCCcchhHHHHhHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            667777776 7788999999999999999999 55666789999999999998854

>TIGR00902 2A0127 phenyl proprionate permease family protein

Probab=99.58  E-value=6.9e-14  Score=106.70  Aligned_cols=144  Identities=17%  Similarity=0.107  Sum_probs=113.5

Q ss_pred             HHHHHHHHHHHHHHHhhhcchhcccCCCchhHHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHH-HHHHHHHH-HHH
Q 030356           32 GLGLVAEAMEIMILSFIGPAIKSEWNLSPAQETLLTSVVFAGLLVGSYSWGFISDNYGRRKGLLGIA-MLASVAGL-LSA  109 (179)
Q Consensus        32 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~d~~G~r~~~~~~~-~~~~~~~~-~~~  109 (179)
                      .+.++..........++.|.+.+|+|.|..+.+++.+.+.+...++++++|+++||+|||....... ....+..+ ...
T Consensus        10 ~~~~~~~~~~~~~~~p~l~~~l~~~g~s~~~ig~~~s~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~l~~~~~~~   89 (382)
T TIGR00902        10 ALGFFGYFCAYGIFLPFFPAWLKGIGLGEEMIGLLIGAALIARFAGGLFFAPLIKDANHIIIALRLLALASAIFAAAFSA   89 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHH
Confidence            3445556666677778888999999999999999999999999999999999999999854332221 11112222 334


Q ss_pred             HHHHHHHHHHHHHHHHhhcCch-hhHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Q 030356          110 FSLNYLSLVTLRGLVGIGLGSG-PVCLSWFLEFIPASNRGMWMVVISIFWTLGTIFEAALAWGNILLNS  177 (179)
Q Consensus       110 ~~~~~~~~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~~~~~~  177 (179)
                      .+++++.+++.|.+.|.+.+.. +...++..+.  +++|++..+......++|..++|++++.+.+..|
T Consensus        90 ~~~~~~~l~~~~~l~~~~~~~~~p~~~al~~~~--~~~~~~~~g~~~~~~slG~~~g~~l~g~l~~~~g  156 (382)
T TIGR00902        90 GAHNAWLLFIAIGLFALFFSAGMPIGDALANTW--QKQFGLDYGKVRLIGSAAFIIGSALFGGLIGMFD  156 (382)
T ss_pred             hhhhHHHHHHHHHHHHHHHccchhHHHHHHHHH--HHHcCCCccHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            5788999999999999888877 7777776654  4788999999999999999999999999998765

This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.

>PRK12307 putative sialic acid transporter; Provisional

Probab=99.58  E-value=3.1e-13  Score=104.29  Aligned_cols=132  Identities=14%  Similarity=0.070  Sum_probs=99.4

Q ss_pred             HhhhcchhcccCCCchhHHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030356           46 SFIGPAIKSEWNLSPAQETLLTSVVFAGLLVGSYSWGFISDNYGRRKGLLGIAMLASVAGLLSAFSLNYLSLVTLRGLVG  125 (179)
Q Consensus        46 ~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~d~~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G  125 (179)
                      ....|.+.++.|.++.+.+...+...++..+++++.|++.||+|||+.+..+.++..+..+.....++.....+..++.|
T Consensus       251 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  330 (426)
T PRK12307        251 FGLLPTYLAGEGFDTGVVSNLMTAAAFGTVLGNIVWGLCADRIGLKKTFSIGLLMSFLFIFPLFRIPQDNYLLLGACLFG  330 (426)
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHH
Confidence            33456666677889999999999999999999999999999999999988887776665544433222111222223333


Q ss_pred             h--hcCch-hhHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Q 030356          126 I--GLGSG-PVCLSWFLEFIPASNRGMWMVVISIFWTLGTIFEAALAWGNILLNS  177 (179)
Q Consensus       126 ~--~~g~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~~~~~~  177 (179)
                      .  +.... +..+.++.|.+|+++|++++++......+++.++|.+.+++.+..+
T Consensus       331 ~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~~~~gp~~~g~l~~~~g  385 (426)
T PRK12307        331 LMATNVGVGGLVPKFLYDYFPLEVRGLGTGLIYNLAATSGTFNSMAATWLGITMG  385 (426)
T ss_pred             HHHhcccHhHHHHHHHHHhCcHHHHhhhhhHHHHHHhHHHHHHHHHHHHHHHccc
Confidence            3  33333 4566788999999999999999999999999999999999987654

>TIGR00892 2A0113 monocarboxylate transporter 1

Probab=99.58  E-value=5.3e-14  Score=109.69  Aligned_cols=132  Identities=14%  Similarity=0.127  Sum_probs=107.3

Q ss_pred             HhhhcchhcccCCCchhHHHHHHHHHHHHHHHHHHHhhhhccc--cchhHHHH--HHHHHHHHHHHHHHHHHHHHHHHHH
Q 030356           46 SFIGPAIKSEWNLSPAQETLLTSVVFAGLLVGSYSWGFISDNY--GRRKGLLG--IAMLASVAGLLSAFSLNYLSLVTLR  121 (179)
Q Consensus        46 ~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~d~~--G~r~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~  121 (179)
                      ..+.|.+.++.|.++.+.+++.++..++..+++++.|+++||.  ++|+....  +.+..++..++....++++.+++.+
T Consensus       261 ~~~l~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~i~~  340 (455)
T TIGR00892       261 IIFLVPYAKDKGVDEYEAAFLLSIIGFVDIFARPSCGLIAGLKWIRPHVQYLFSFALLFNGLTHLLCALAGDYTGLVIYC  340 (455)
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHH
Confidence            3344555677899999999999999999999999999999974  34433333  3333344444556677888888899


Q ss_pred             HHHHhhcCch-hhHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Q 030356          122 GLVGIGLGSG-PVCLSWFLEFIPASNRGMWMVVISIFWTLGTIFEAALAWGNILLNS  177 (179)
Q Consensus       122 ~l~G~~~g~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~~~~~~  177 (179)
                      ++.|++.+.. +...+.+.|.+|++++++.+++++....+|..++|.+++++.+..+
T Consensus       341 ~~~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~igp~i~G~l~~~~g  397 (455)
T TIGR00892       341 IFFGLSFGSVGALLFEVLMDLVGAQRFSSAVGLVTIVECCAVLIGPPLAGRLVDATK  397 (455)
T ss_pred             HHHHHHhchHHHHHHHHHHHHhhHHHHhhHHhHHHHHHHHHHHccccceeeeehhcC
Confidence            9999999888 8888999999999999999999999999999999999999988654

>KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only]

Probab=99.58  E-value=3.1e-14  Score=105.35  Aligned_cols=164  Identities=44%  Similarity=0.783  Sum_probs=148.4

Q ss_pred             HHHhhcCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhcccCCCchhHHHHHHHHHHHHHHHHHHHhhhhccccchh
Q 030356           13 EALNHVGFGKFQILVLIYAGLGLVAEAMEIMILSFIGPAIKSEWNLSPAQETLLTSVVFAGLLVGSYSWGFISDNYGRRK   92 (179)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~d~~G~r~   92 (179)
                      +..+..++.+.++...+...+..+...+.....+...|...+.+|.++.|..+++...+.+..+++..+|.++|++|||+
T Consensus        65 ea~~aigfgrfq~yl~~~ag~gwmad~m~~m~~s~i~~~l~~~w~~s~~q~~llt~~v~~gmllga~~w~l~~d~~grr~  144 (528)
T KOG0253|consen   65 EAMNAIGFGRFQWYLFFVAGMGWMADAMEMMLLSLILPALDEVWGPSEGQAPLLTLSVFLGMLVGAMVWGLSADTIGRRK  144 (528)
T ss_pred             hhhhhcCcccchhhHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHHHhhhhhhhhhhheehhhhhcch
Confidence            34455678889999999999999888888888888889898999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhhHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 030356           93 GLLGIAMLASVAGLLSAFSLNYLSLVTLRGLVGIGLGSGPVCLSWFLEFIPASNRGMWMVVISIFWTLGTIFEAALAWGN  172 (179)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~  172 (179)
                      ......+...+..++...++|+..+.+.|.+.|+|.|+.|...++-.|..|..+|...+-.. ..+.+|.++...++..+
T Consensus       145 ~f~~T~l~t~v~~~is~~spnf~~L~~f~~l~~~g~gg~pv~~~~yle~lp~~~r~~~~V~~-~~waig~v~ea~law~v  223 (528)
T KOG0253|consen  145 GFNLTFLVTGVFGVISGASPNFASLCVFRALWGFGVGGLPVDSAIYLEFLPSSHRWLLTVMS-FFWAIGQVFEALLAWGV  223 (528)
T ss_pred             hhhhhHHHHHHHHHhhcCCCCeehhhHHHHHHhccCCCccHhHHHHHHhccCcCCCcchhHH-HHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999888888889999999999887777 99999999999999888


Q ss_pred             hccCC
Q 030356          173 ILLNS  177 (179)
Q Consensus       173 ~~~~~  177 (179)
                      +...|
T Consensus       224 m~~~g  228 (528)
T KOG0253|consen  224 MSNFG  228 (528)
T ss_pred             HHhhh
Confidence            77654

>PRK15075 citrate-proton symporter; Provisional

Probab=99.57  E-value=1.4e-13  Score=106.71  Aligned_cols=139  Identities=19%  Similarity=0.191  Sum_probs=98.6

Q ss_pred             HHHHHHHHhhhcchhc-ccCCCchhHHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHH-HHH-H--HHH
Q 030356           39 AMEIMILSFIGPAIKS-EWNLSPAQETLLTSVVFAGLLVGSYSWGFISDNYGRRKGLLGIAMLASVAGL-LSA-F--SLN  113 (179)
Q Consensus        39 ~~~~~~~~~~~~~~~~-~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~d~~G~r~~~~~~~~~~~~~~~-~~~-~--~~~  113 (179)
                      .........+.|.+.+ ++|.++.+.++......++..+++++.|+++||+|||+++..+.....+... ... .  .++
T Consensus       251 ~~~~~~~~~~~p~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~  330 (434)
T PRK15075        251 TVSFYLITVYTPTFGKTVLHLSAADSLLVTLCVGVSNFIWLPIGGALSDRIGRRPVLIAFTVLAILTAYPALSWLVAAPS  330 (434)
T ss_pred             HHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHcCCc
Confidence            3334444444555554 4899999999999999999999999999999999999988776544332221 111 1  123


Q ss_pred             HHHHHHHHHHHHhhcCch-hhHHHHHHHhccccchhHHHHHH-HHHHHHHHHHHHHHHHHHhccCC
Q 030356          114 YLSLVTLRGLVGIGLGSG-PVCLSWFLEFIPASNRGMWMVVI-SIFWTLGTIFEAALAWGNILLNS  177 (179)
Q Consensus       114 ~~~~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~r~~~~~~~-~~~~~~g~~~~~~i~~~~~~~~~  177 (179)
                      ........++.+++.+.. +....+..|.+|+++|+++.++. +.+..+++.++|.+.+++.+..+
T Consensus       331 ~~~~~~~~~~~~~~~g~~~~~~~~~~~e~~p~~~rg~~~g~~~~~~~~~~g~~~p~~~g~i~~~~g  396 (434)
T PRK15075        331 FARMLAVELWLSFLYGSYNGAMVVALTEVMPAEVRTAGFSLAYSLATAIFGGFTPAISTWLIHVTG  396 (434)
T ss_pred             hHHHHHHHHHHHHHHHHHHhhHHHHHHHHCCCCccchheeHHHHHHHHHHhhhHHHHHHHHHHhcC
Confidence            333333445556666655 55668889999999999999994 55555567889999999998765

>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism]

Probab=99.56  E-value=1.1e-14  Score=114.34  Aligned_cols=157  Identities=15%  Similarity=0.129  Sum_probs=135.7

Q ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhcccCCCchhHHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHH
Q 030356           20 FGKFQILVLIYAGLGLVAEAMEIMILSFIGPAIKSEWNLSPAQETLLTSVVFAGLLVGSYSWGFISDNYGRRKGLLGIAM   99 (179)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~d~~G~r~~~~~~~~   99 (179)
                      ...+-|.+.+..++......-.......+.+.+.++++.+.++.+|+.++......+..|+.+.+.||+|.|.+.+++.+
T Consensus        40 dGG~gWvV~~a~fl~~~~~~g~~~~~Gv~~~~~~~~f~~s~~~~~~i~sl~~~~~~~~gpl~s~l~~rfg~R~v~i~G~~  119 (509)
T KOG2504|consen   40 DGGWGWVVVFASFLVNLSTDGLINSFGLLFEELMDYFGSSSSQIAWIGSLLLGVYLLAGPLVSALCNRFGCRTVMIAGGL  119 (509)
T ss_pred             CCCeeeeeeHhHHHHHHhhhcchheehhhHHHHHHHhCCCccHHHHHHHHHHHHHHHhccHHHHHHhhcCchHHHHHHHH
Confidence            44566766666666666555555666677799999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHH-HHHHHHhhcCch-hhHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Q 030356          100 LASVAGLLSAFSLNYLSLVT-LRGLVGIGLGSG-PVCLSWFLEFIPASNRGMWMVVISIFWTLGTIFEAALAWGNILLNS  177 (179)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~-~~~l~G~~~g~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~~~~~~  177 (179)
                      +..++.++..++++++.+++ ..++.|+|.+.. .+....+..+| +++|+.++++...+.++|.++-|.+..++.+..|
T Consensus       120 v~~~g~~lssF~~~i~~l~lt~gvi~G~G~~~~~~paiviv~~YF-~kkR~lA~Gia~~GsG~G~~~~~~l~~~l~~~~G  198 (509)
T KOG2504|consen  120 VAALGLLLSSFATSLWQLYLTFGVIGGLGLGLIYLPAVVILGTYF-EKKRALATGIAVSGTGVGTVVFPPLLKYLLSKYG  198 (509)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHhhccchhhhcchhhhhhhHh-HHHHHHHHhhhhccCCcceeeHHHHHHHHHHHhC
Confidence            99999999999999988776 579999999998 66677777555 5899999999999999999999999999998776

>PRK05122 major facilitator superfamily transporter; Provisional

Probab=99.56  E-value=5e-13  Score=102.34  Aligned_cols=127  Identities=14%  Similarity=0.066  Sum_probs=105.7

Q ss_pred             hcchhcccCCCchhHHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 030356           49 GPAIKSEWNLSPAQETLLTSVVFAGLLVGSYSWGFISDNYGRRKGLLGIAMLASVAGLLSAFSLNYLSLVTLRGLVGIGL  128 (179)
Q Consensus        49 ~~~~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~d~~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~  128 (179)
                      .+.+.++.|.  ++.++..+.+.++..++.++.|++.||+|+|+.+..+..+.+++.......++...+++..++.|++.
T Consensus       239 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~  316 (399)
T PRK05122        239 ITLYYAARGW--DGAALALTLFGVAFVGARLLFGNLINRLGGLRVAIVSLLVEILGLLLLWLAPSPWMALIGAALTGFGF  316 (399)
T ss_pred             HHHHHHHccc--ccchHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhH
Confidence            3444445555  34566677888999999999999999999999998888888888777777777777778889999998


Q ss_pred             Cch-hhHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Q 030356          129 GSG-PVCLSWFLEFIPASNRGMWMVVISIFWTLGTIFEAALAWGNILLNS  177 (179)
Q Consensus       129 g~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~~~~~~  177 (179)
                      +.. +.......|..|+++|+++.++++....+|..++|.+.+++.+..+
T Consensus       317 ~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g  366 (399)
T PRK05122        317 SLVFPALGVEAVKRVPPQNRGAALGAYSVFLDLSLGITGPLAGLVASWFG  366 (399)
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            877 7777788899999999999999999999999999999999887643

>PRK03893 putative sialic acid transporter; Provisional

Probab=99.55  E-value=1.4e-13  Score=108.19  Aligned_cols=131  Identities=14%  Similarity=0.010  Sum_probs=102.0

Q ss_pred             hhhcchh-cccCCCchhHHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHH
Q 030356           47 FIGPAIK-SEWNLSPAQETLLTSVVFAGLLVGSYSWGFISDNYGRRKGLLGIAMLASVAGLLSAFS--LNYLSLVTLRGL  123 (179)
Q Consensus        47 ~~~~~~~-~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~d~~G~r~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l  123 (179)
                      .+.|.+. +++|.++.+.+++.+...++..+++++.|+++||+|||+++..+..+..+..+.....  .+...+....++
T Consensus       296 ~~lp~~l~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  375 (496)
T PRK03893        296 ALLPTYLKTDLGYDPHTVANVLFFSGFGAAVGCCVGGFLGDWLGTRKAYVCSLLISQLLIIPVFAIGGANVWVLGLLLFF  375 (496)
T ss_pred             HHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHH
Confidence            3445555 5889999999999999999999999999999999999999888776665554433322  233334444444


Q ss_pred             HHhhcCch-hhHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Q 030356          124 VGIGLGSG-PVCLSWFLEFIPASNRGMWMVVISIFWTLGTIFEAALAWGNILLNS  177 (179)
Q Consensus       124 ~G~~~g~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~~~~~~  177 (179)
                      .+...... +..+.++.|.+|+++|++++++++....+|..++|.+++.+.+..+
T Consensus       376 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~lgp~l~g~l~~~~g  430 (496)
T PRK03893        376 QQMLGQGISGLLPKLIGGYFDTEQRAAGLGFTYNVGALGGALAPILGALIAQRLD  430 (496)
T ss_pred             HHHHhcccchhhHHHHHhhCCHHHhhcccchhhhhhhHHHHHHHHHHHHHhccCC
Confidence            44433333 6667788999999999999999999999999999999999998764

>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions

Probab=99.55  E-value=7.6e-13  Score=103.34  Aligned_cols=136  Identities=20%  Similarity=0.232  Sum_probs=117.4

Q ss_pred             HHHHhhhcchhcccCCCchhHHHHHHHHHHHHHHHHHHHhhhhccccch--hHHHHHHHHHHHHHHHHHH--------HH
Q 030356           43 MILSFIGPAIKSEWNLSPAQETLLTSVVFAGLLVGSYSWGFISDNYGRR--KGLLGIAMLASVAGLLSAF--------SL  112 (179)
Q Consensus        43 ~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~d~~G~r--~~~~~~~~~~~~~~~~~~~--------~~  112 (179)
                      .+......+..+++|.+..+...+..+..+..++|++++|++.||+|.|  +++..+...+.+..+.-.+        .+
T Consensus       299 ti~~~~~i~a~~~lg~s~~~l~~~~l~~~i~a~~Ga~~~g~l~~r~g~k~~~~l~~~l~~~~~i~~~g~~G~~~~~~g~~  378 (477)
T PF11700_consen  299 TIISFAGIYATEVLGMSTTQLIVFGLVVQIVAIIGALLFGWLQDRFGPKTKRTLLISLILWIIIPLYGLFGFWPSFFGLK  378 (477)
T ss_pred             HHHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHhhhcccCcc
Confidence            3334444556678999999999999999999999999999999999999  8888887777555544333        45


Q ss_pred             HHHHHHHHHHHHHhhcCch-hhHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHHHhccCCC
Q 030356          113 NYLSLVTLRGLVGIGLGSG-PVCLSWFLEFIPASNRGMWMVVISIFWTLGTIFEAALAWGNILLNSK  178 (179)
Q Consensus       113 ~~~~~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~~~~~~~  178 (179)
                      +.+.+.+..++.|++.|.. +...++.+|..|+++.+..+|++.......+.++|++.+.+.+.+++
T Consensus       379 ~~~~f~~~a~~~G~~~G~~qs~sRs~~~~LiP~g~e~efFgly~i~gk~ss~lGPll~g~i~~~tg~  445 (477)
T PF11700_consen  379 SPWEFWVLAVLIGLFMGGIQSASRSLFSRLIPPGREAEFFGLYAITGKASSWLGPLLFGLITDATGS  445 (477)
T ss_pred             cHHHHHHHHHHHHHHhhhHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence            6678899999999999998 99999999999999999999999999999999999999999988763

Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.

>PRK11128 putative 3-phenylpropionic acid transporter; Provisional

Probab=99.54  E-value=2e-13  Score=104.08  Aligned_cols=138  Identities=11%  Similarity=0.019  Sum_probs=107.1

Q ss_pred             HHHHHHHHHHHhhhcchhcccCCCchhHHHHHHHHHHHHHHHHHHHhhhhccccch----hHHHHHHHHHHHHHHHHHHH
Q 030356           36 VAEAMEIMILSFIGPAIKSEWNLSPAQETLLTSVVFAGLLVGSYSWGFISDNYGRR----KGLLGIAMLASVAGLLSAFS  111 (179)
Q Consensus        36 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~d~~G~r----~~~~~~~~~~~~~~~~~~~~  111 (179)
                      +..........+.+|.+.+|+|.|.++.+++.+++.++..+++++.|++.||+|||    +.+.+.....  ........
T Consensus        14 ~~~~~~~g~~~p~l~~~l~~~g~s~~~iG~~~~~~~l~~~l~~~~~g~l~dr~g~~~~~~~~~~~~~~~~--~~~~~~~~   91 (382)
T PRK11128         14 FGYFFAYGVFLPFWSVWLKGQGYTPETIGLLLGAGLVARFLGSLLIAPRVKDPSQLIPALRLLALLTLLF--AVAFWFGA   91 (382)
T ss_pred             HHHHHHHHHHhhhHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhHHHHHHHhhhcchHHHHHHHHHHHHHH--HHHHHHhc
Confidence            33444456667777888899999999999999999999999999999999999984    3332222211  22223345


Q ss_pred             HHHHHHHHHHHHHHhhcCch-hhHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Q 030356          112 LNYLSLVTLRGLVGIGLGSG-PVCLSWFLEFIPASNRGMWMVVISIFWTLGTIFEAALAWGNILLNS  177 (179)
Q Consensus       112 ~~~~~~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~~~~~~  177 (179)
                      ++++.+++.|++.|++.+.. +...++..++  +++|+++.+.......+|..++|.+++++.+..+
T Consensus        92 ~~~~~l~i~~~l~g~~~~~~~~~~~a~~~~~--~~~~~~a~~~~~~~~~lg~~igp~lgg~l~~~~g  156 (382)
T PRK11128         92 HSFWLLFVAIGLFNLFFSPLVPLTDALANTW--QKQIGLDYGKVRLWGSIAFVIGSALTGKLVSWFG  156 (382)
T ss_pred             ccHHHHHHHHHHHHHHHcccccHHHHHHHHH--HhhccCCcchHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            78888899999999988877 7777776666  4568888888888889999999999999988654

>PRK10406 alpha-ketoglutarate transporter; Provisional

Probab=99.53  E-value=5.8e-13  Score=103.18  Aligned_cols=128  Identities=13%  Similarity=0.026  Sum_probs=84.3

Q ss_pred             HhhhcchhcccCCCchhHHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHHHHH--HH--HHHHHHHHHH
Q 030356           46 SFIGPAIKSEWNLSPAQETLLTSVVFAGLLVGSYSWGFISDNYGRRKGLLGIAMLASVAGLLSA--FS--LNYLSLVTLR  121 (179)
Q Consensus        46 ~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~d~~G~r~~~~~~~~~~~~~~~~~~--~~--~~~~~~~~~~  121 (179)
                      .+..+++.+++|.+..+.+...++..++..+++++.|+++||+|||+.+.....+.++......  ..  ++....+...
T Consensus       264 ~~lp~~l~~~~g~s~~~~~~~~~i~~~~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  343 (432)
T PRK10406        264 TYMQKYLVNTAGMHANVASGIMTAALFVFMLIQPLIGALSDKIGRRTSMLCFGSLAALFTVPILSALQNVSSPYAAFGLV  343 (432)
T ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHH
Confidence            3333445566899999999989988888899999999999999999988776554433332221  11  1222222222


Q ss_pred             HHHHhhcCch-hhHHHHHHHhccccchhHHHHHHHHH-HHHHHHHHHHHHHHHh
Q 030356          122 GLVGIGLGSG-PVCLSWFLEFIPASNRGMWMVVISIF-WTLGTIFEAALAWGNI  173 (179)
Q Consensus       122 ~l~G~~~g~~-~~~~~~~~~~~~~~~r~~~~~~~~~~-~~~g~~~~~~i~~~~~  173 (179)
                      .+.+...+.. +....+..|.+|+|.|+++.++.+.. ..+.+...|.+.+.+.
T Consensus       344 ~~~~~~~~~~~~~~~~~~~e~fp~~~r~t~~g~~~~~g~~~~g~~~p~~~~~l~  397 (432)
T PRK10406        344 MCALLIVSFYTSISGILKAEMFPAQVRALGVGLSYAVANALFGGSAEYVALSLK  397 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHCCCCccchhhhHHHHHHHHHHHhHHHHHHHHHH
Confidence            2222233333 45667889999999999999996544 4444555788777553

>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily

Probab=99.53  E-value=5.2e-13  Score=105.31  Aligned_cols=131  Identities=15%  Similarity=0.041  Sum_probs=118.8

Q ss_pred             hhhcchh-cccCCCchhHHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030356           47 FIGPAIK-SEWNLSPAQETLLTSVVFAGLLVGSYSWGFISDNYGRRKGLLGIAMLASVAGLLSAFSLNYLSLVTLRGLVG  125 (179)
Q Consensus        47 ~~~~~~~-~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~d~~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G  125 (179)
                      ..+|.+. +++|.++...|++.+..++|.++++++.+++.+|+++++.+..+.+..++..+.++++++.+...+..++.|
T Consensus       239 aLlPl~a~~~l~~~a~~yGll~a~~gvGai~Gal~~~~l~~~~~~~~lv~~~~~~~a~~~~~lal~~~~~~~~~~l~l~G  318 (524)
T PF05977_consen  239 ALLPLFARDVLGGGASGYGLLLAAFGVGAILGALLLPRLRRRLSSRRLVLLASLLFALALLLLALSPSFWLALIALFLAG  318 (524)
T ss_pred             HhhhHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhcccCcchhhHHHHHHHHHHHHHHhcchHHHHHHHHHHHHH
Confidence            4456665 458999999999999999999999999999999999999999999999999999999999998888899999


Q ss_pred             hhcCch-hhHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Q 030356          126 IGLGSG-PVCLSWFLEFIPASNRGMWMVVISIFWTLGTIFEAALAWGNILLNS  177 (179)
Q Consensus       126 ~~~g~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~~~~~~  177 (179)
                      ++.... ....+.+.+..|++.||+.++++++....+..+|.++.|.+.+..|
T Consensus       319 ~~~~~~~~~~~t~~Q~~~P~~~~GRv~si~~~~~~g~~~lGsll~G~la~~~g  371 (524)
T PF05977_consen  319 AAWIIANSSLNTLVQLSVPDWVRGRVFSIYQMVFFGGMPLGSLLWGFLADHFG  371 (524)
T ss_pred             HHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            988887 7788899999999999999999999999999999999999988654

EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].

>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=99.53  E-value=5e-13  Score=103.50  Aligned_cols=108  Identities=28%  Similarity=0.481  Sum_probs=97.1

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHhhcCch-hhHHHHHH
Q 030356           64 TLLTSVVFAGLLVGSYSWGFISDNYGRRKGLLGIAMLASVAGLLSAF---SLNYLSLVTLRGLVGIGLGSG-PVCLSWFL  139 (179)
Q Consensus        64 ~~~~~~~~~~~~i~~~~~g~l~d~~G~r~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~l~G~~~g~~-~~~~~~~~  139 (179)
                      +.+.+++.+|.++|++..++++||+|||..+.++.++..++.+++.+   .+++..++++|++.|+..|.. ...+.++.
T Consensus        63 S~~vs~f~iG~~~Gs~~~~~la~~~GRK~~l~~~~~l~~~~~~~~~~s~~~~~~e~li~GR~i~Gl~~gl~~~~~pmyl~  142 (485)
T KOG0569|consen   63 SLIVSIFFIGGMIGSFSSGLLADRFGRKNALLLSNLLAVLAALLMGLSKSAPSFEMLILGRLIVGLACGLSTGLVPMYLT  142 (485)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhHHHHHHHHHHHh
Confidence            67899999999999999999999999999999998888888776655   457888899999999999998 88999999


Q ss_pred             HhccccchhHHHHHHHHHHHHHHHHHHHHHHH
Q 030356          140 EFIPASNRGMWMVVISIFWTLGTIFEAALAWG  171 (179)
Q Consensus       140 ~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~  171 (179)
                      |..|++.||....+.+.+..+|..++..++.-
T Consensus       143 E~sP~~~RG~~g~~~~~~~~~g~ll~~~~~l~  174 (485)
T KOG0569|consen  143 EISPKNLRGALGTLLQIGVVIGILLGQVLGLP  174 (485)
T ss_pred             hcChhhhccHHHHHHHHHHHHHHHHHHHHccH
Confidence            99999999999999999999999998666543

>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter

Probab=99.53  E-value=8.1e-13  Score=102.24  Aligned_cols=131  Identities=15%  Similarity=0.150  Sum_probs=104.6

Q ss_pred             Hhhhcchhcc-cCCCchhHHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
Q 030356           46 SFIGPAIKSE-WNLSPAQETLLTSVVFAGLLVGSYSWGFISDNYGRRKGLLGIAMLASVAGLLSAFS-LNYLSLVTLRGL  123 (179)
Q Consensus        46 ~~~~~~~~~~-~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~d~~G~r~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l  123 (179)
                      ....+++.++ ++ ++.+.+++.+...++..++.+++++++||+|+|+.+..+..+.+++.+...+. ++...+.+..++
T Consensus       242 ~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  320 (437)
T TIGR00792       242 NGVQVYYFTYVLG-DPELFSYMGSIAIVAGLIGVLLFPRLVKKFGRKILFAGGILLMVLGYLIFFFAGSNLPLILVLIIL  320 (437)
T ss_pred             cchhheeEeeecC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcchhHHHHHHHHHH
Confidence            3334555444 44 56677788888899999999999999999999999999988877777666554 355666677788


Q ss_pred             HHhhcCch-hhHHHHHHHhcc-------ccchhHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Q 030356          124 VGIGLGSG-PVCLSWFLEFIP-------ASNRGMWMVVISIFWTLGTIFEAALAWGNILLNS  177 (179)
Q Consensus       124 ~G~~~g~~-~~~~~~~~~~~~-------~~~r~~~~~~~~~~~~~g~~~~~~i~~~~~~~~~  177 (179)
                      .|++.+.. +...++++|..+       ++++|...++++....+|..+++.+.+++.+..|
T Consensus       321 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~g~~lg~~i~g~ll~~~G  382 (437)
T TIGR00792       321 AGFGQNFVTGLVWALVADTVDYGEWKTGVRAEGLVYSVRTFVRKLGQALAGFLVGLILGIIG  382 (437)
T ss_pred             HHHHHHHHHHHHHHHHhhhhhhhhhhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            88988887 778888888765       5567999999999999999999999999987543

GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.

>TIGR02332 HpaX 4-hydroxyphenylacetate permease

Probab=99.53  E-value=2e-13  Score=105.18  Aligned_cols=148  Identities=16%  Similarity=0.069  Sum_probs=98.3

Q ss_pred             HHHHHHHHHHHHHHHhhhcchhccc--CCCchhHHHHHHHHHHHHHHHHHHHhhhhccccchhH-HHHHHHHHHHHHHHH
Q 030356           32 GLGLVAEAMEIMILSFIGPAIKSEW--NLSPAQETLLTSVVFAGLLVGSYSWGFISDNYGRRKG-LLGIAMLASVAGLLS  108 (179)
Q Consensus        32 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~s~~~~~~~~~~~~~~~~i~~~~~g~l~d~~G~r~~-~~~~~~~~~~~~~~~  108 (179)
                      .+.+++............|.+.+++  +.+..+.+.......++..++.+..|+++||++||+. .........+...+.
T Consensus       248 ~~~~~~~~~~~~~~~~~~p~~l~~~~~~~s~~~~~~~~~~~~l~~~~g~l~~g~l~dr~~~r~~~~~~~~~~~~~~~~~~  327 (412)
T TIGR02332       248 TLAYFCLTNTLSAINIWTPQILQSFNQGSSNIMIGLLAAIPQFCTIFGMIWWSRHSDRLKERKHHTALPYLFAAAGWLLA  327 (412)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHhHHHhhHHHHHHHHHHHHHHHHhcccCccHHHHHHHHHHHHHHHHHH
Confidence            3334444444455555666676664  5678889999999999999999999999999997775 333333333333222


Q ss_pred             HHHHHHHHHHHHHHHHHhhcCch-hhHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHHHhccCCCC
Q 030356          109 AFSLNYLSLVTLRGLVGIGLGSG-PVCLSWFLEFIPASNRGMWMVVISIFWTLGTIFEAALAWGNILLNSKN  179 (179)
Q Consensus       109 ~~~~~~~~~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~~~~~~~~  179 (179)
                      ...++.........+.+++.... +.......|.+|+++|+++.++.+....+|+.++|.+.+.+.+..++|
T Consensus       328 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~a~g~~~~~~~~g~~~~p~~~g~i~~~~g~~  399 (412)
T TIGR02332       328 SATDHNLIQLLGIIMASMGSFSAMAIFWTTPDQSISLQARAIAIAVINATGNIGSALSPFLIGILKDATGSF  399 (412)
T ss_pred             HhcCCHHHHHHHHHHHHHHhhhhhhHHHhhcccccchHHHHHHHHHHHHhhhhhhhhhhhhcccccccCCCC
Confidence            22222222222222223333222 333444567899999999999999999999999999999999887654

This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.

>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily

Probab=99.52  E-value=2.1e-13  Score=106.75  Aligned_cols=133  Identities=17%  Similarity=0.078  Sum_probs=109.5

Q ss_pred             HHHHHhhhcchhc-ccCCCchhHHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHHHHHH--H--HHHHH
Q 030356           42 IMILSFIGPAIKS-EWNLSPAQETLLTSVVFAGLLVGSYSWGFISDNYGRRKGLLGIAMLASVAGLLSAF--S--LNYLS  116 (179)
Q Consensus        42 ~~~~~~~~~~~~~-~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~d~~G~r~~~~~~~~~~~~~~~~~~~--~--~~~~~  116 (179)
                      ........|.+.+ .+|.++.+.++......++..++.++.|++.||+|||+.+..+..+.+++...+.+  .  .+...
T Consensus       271 ~~~~~~~~p~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~  350 (485)
T TIGR00711       271 LYGSFYLLPLYLQQVLGYTALQAGLHILPVGLAPMLSSPIAGRMGDKIDPRKLVTIGLILYAVGFYWRAFTFTPDTPFLA  350 (485)
T ss_pred             HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHhccCCCCCCHHH
Confidence            3333444555554 48999999999999999999999999999999999999999888888777776652  1  24455


Q ss_pred             HHHHHHHHHhhcCch-hhHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 030356          117 LVTLRGLVGIGLGSG-PVCLSWFLEFIPASNRGMWMVVISIFWTLGTIFEAALAWGNIL  174 (179)
Q Consensus       117 ~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~~~  174 (179)
                      +....++.|++.+.. +.......+..|+++|+++.++++....+|+.+++.+.+.+.+
T Consensus       351 ~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~i~g~~~~  409 (485)
T TIGR00711       351 IALPQFIRGFGMGCFFMPLTTIALSGLPPHKIARGSSLSNFTRQLGGSIGTALITTILT  409 (485)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            666678899998887 6677777888999999999999999999999999999988875

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.

>PRK10504 putative transporter; Provisional

Probab=99.52  E-value=2.6e-13  Score=106.08  Aligned_cols=140  Identities=16%  Similarity=0.117  Sum_probs=111.6

Q ss_pred             HHHHHHHHHHhhhcchhc-ccCCCchhHHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHHHHHHH---H
Q 030356           37 AEAMEIMILSFIGPAIKS-EWNLSPAQETLLTSVVFAGLLVGSYSWGFISDNYGRRKGLLGIAMLASVAGLLSAFS---L  112 (179)
Q Consensus        37 ~~~~~~~~~~~~~~~~~~-~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~d~~G~r~~~~~~~~~~~~~~~~~~~~---~  112 (179)
                      +............|++.+ .+|.++.+.++......++..++.++.+++.||+|+|+++..+..+.++...+..+.   +
T Consensus       272 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~  351 (471)
T PRK10504        272 AGRIGSGMLPFMTPVFLQIGLGFSPFHAGLMMIPMVLGSMGMKRIVVQVVNRFGYRRVLVATTLGLALVSLLFMLVALLG  351 (471)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHhccccc
Confidence            333334444555677666 488999999999999999999999999999999999999998888777776655542   2


Q ss_pred             HHHHHHHHHHHHHhhcCch-hhHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHHHhccC
Q 030356          113 NYLSLVTLRGLVGIGLGSG-PVCLSWFLEFIPASNRGMWMVVISIFWTLGTIFEAALAWGNILLN  176 (179)
Q Consensus       113 ~~~~~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~~~~~  176 (179)
                      +...+.+..++.|++.+.. +.......+..|+++|+.++++++....+|..+++.+++.+.+..
T Consensus       352 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~i~g~ll~~~  416 (471)
T PRK10504        352 WYYLLPFVLFLQGMVNSTRFSSMNTLTLKDLPDNLASSGNSLLSMIMQLSMSIGVTIAGLLLGLF  416 (471)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            3333445567778888776 777888899999999999999999999999999999999887654

>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family

Probab=99.52  E-value=7.7e-13  Score=101.11  Aligned_cols=129  Identities=12%  Similarity=-0.013  Sum_probs=95.0

Q ss_pred             hcchhcccCCCchhHHHHHHHHHH-HHHHHHHHHhhhhccccchhHHHHHHHHHHHHHHHHHH-H-----HHHHHHHHHH
Q 030356           49 GPAIKSEWNLSPAQETLLTSVVFA-GLLVGSYSWGFISDNYGRRKGLLGIAMLASVAGLLSAF-S-----LNYLSLVTLR  121 (179)
Q Consensus        49 ~~~~~~~~~~s~~~~~~~~~~~~~-~~~i~~~~~g~l~d~~G~r~~~~~~~~~~~~~~~~~~~-~-----~~~~~~~~~~  121 (179)
                      .+.+.+|.|.++++.+++...... ...++.++.|++.||+|+|+.+..+....+........ .     ++........
T Consensus       231 ~~~~l~~~G~s~~~ig~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  310 (390)
T TIGR02718       231 SKLYLVDAGWPLEWIGRLGMAGGAVTVLLGCGGGAWLVRRAGLWRTFILGVGLAGSLALLWFAQAAFWLAPGIAVAWSCS  310 (390)
T ss_pred             hhHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHcccCCcHHHHHHHH
Confidence            345556789999999999888764 66778999999999999999988776655333222211 1     1222333344


Q ss_pred             HHHHhhcCch-hhHHHHHHHhccc-cchhHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Q 030356          122 GLVGIGLGSG-PVCLSWFLEFIPA-SNRGMWMVVISIFWTLGTIFEAALAWGNILLNS  177 (179)
Q Consensus       122 ~l~G~~~g~~-~~~~~~~~~~~~~-~~r~~~~~~~~~~~~~g~~~~~~i~~~~~~~~~  177 (179)
                      .+.+++.+.. +...+...+..++ +++++.+++.+....+|..++|.+++.+.+..|
T Consensus       311 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lg~~~g~~~~G~l~~~~G  368 (390)
T TIGR02718       311 AFGSLITGITSVAIYTAFMRFAGDGDQAGTDVTAVQSTRDLGELIASSIAGYLTDRFG  368 (390)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            4555666666 6667777777776 889999999999999999999999999987654

RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.

>TIGR00901 2A0125 AmpG-related permease

Probab=99.52  E-value=7.1e-13  Score=100.05  Aligned_cols=116  Identities=13%  Similarity=0.124  Sum_probs=92.1

Q ss_pred             HHHhhhcchhcccCCCchhHHHHHHHHH-HHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHHHHHHH-----------
Q 030356           44 ILSFIGPAIKSEWNLSPAQETLLTSVVF-AGLLVGSYSWGFISDNYGRRKGLLGIAMLASVAGLLSAFS-----------  111 (179)
Q Consensus        44 ~~~~~~~~~~~~~~~s~~~~~~~~~~~~-~~~~i~~~~~g~l~d~~G~r~~~~~~~~~~~~~~~~~~~~-----------  111 (179)
                      ......|.+.+++|.++++.+.+..... ++..++.++.|++.||+|||+.+..+.++.++......+.           
T Consensus       227 ~~~~~~~~~l~~~g~~~~~~g~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  306 (356)
T TIGR00901       227 AATVLTTLFLLDMGFSKEEIALVAKINGLLGAILGGLIGGIIMQPLNILYALLLFGIVQALTNAGFVWLASNGHHDGITF  306 (356)
T ss_pred             HHHHHHHHHHHHcCCCHHHHHHHhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhcCccccccc
Confidence            3334445555568999999998887666 6788999999999999999999888888777766554432           


Q ss_pred             HHHHHHHHHHHHHHhhcCch-hhHHHHHHHhccccchhHHHHHHHHHHH
Q 030356          112 LNYLSLVTLRGLVGIGLGSG-PVCLSWFLEFIPASNRGMWMVVISIFWT  159 (179)
Q Consensus       112 ~~~~~~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~  159 (179)
                      ++.+.+....++.+++.+.. +...+++.|.+|+|+||+.+++++...+
T Consensus       307 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~  355 (356)
T TIGR00901       307 PHLLMLFLTITLEAVTGGLGTVAFVAFLSKLSNPKFGATQMALLSSLSA  355 (356)
T ss_pred             chHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHh
Confidence            34455666778889998888 8899999999999999999999887654

>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter

Probab=99.52  E-value=7.8e-13  Score=102.96  Aligned_cols=137  Identities=15%  Similarity=0.166  Sum_probs=105.4

Q ss_pred             HHHHHHHHHHHhhhcchhcccCCCchhHHHHHHHHHHHHHHHHHHHhhhhc----cccchhHHHHH-HHHHHHHHHHHHH
Q 030356           36 VAEAMEIMILSFIGPAIKSEWNLSPAQETLLTSVVFAGLLVGSYSWGFISD----NYGRRKGLLGI-AMLASVAGLLSAF  110 (179)
Q Consensus        36 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~d----~~G~r~~~~~~-~~~~~~~~~~~~~  110 (179)
                      +...+.+.......+.+.+++|.++.+.+++..+..+...+.+|+.|+++|    |+||||+++.+ ....++..+++.+
T Consensus        14 ~Giq~~~~l~~~~l~~yl~~lg~~~~~~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~GRRrp~il~g~~~~~~~l~ll~~   93 (477)
T TIGR01301        14 AGVQFGWALQLSLLTPYVQELGIPHAWASIIWLCGPLSGLLVQPLVGYLSDRCTSRFGRRRPFIAAGAALVAFAVILIGF   93 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhHeeehhcCCCCCCCChHHHHHHHHHHHHHHHHHHHh
Confidence            333444555555556677889999999999999999999999999999999    59999998875 5555566666666


Q ss_pred             HHHHH-----------------HHHHHHHHHHhhcCch-hhHHHHHHHhccccch--hHHHHHHHHHHHHHHHHHHHHHH
Q 030356          111 SLNYL-----------------SLVTLRGLVGIGLGSG-PVCLSWFLEFIPASNR--GMWMVVISIFWTLGTIFEAALAW  170 (179)
Q Consensus       111 ~~~~~-----------------~~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~r--~~~~~~~~~~~~~g~~~~~~i~~  170 (179)
                      +++..                 ...++..+..++.... ++..+++.|..|+++|  +.+.++.+...++|+.+++.+++
T Consensus        94 ~~~~~~~~~~~~~~~~~~~~i~~~~i~~~lld~~~n~~~~p~rALiaDl~p~~~~~~~~a~~~~~~~~~lG~ilg~~~g~  173 (477)
T TIGR01301        94 AADIGHLFGDNLDKKTKPRAIIVFVVGFWILDVANNMLQGPCRAFLADLTGGDARRTRIANAYFSFFMAIGNVLGYAAGA  173 (477)
T ss_pred             CchhhhhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            55432                 2223333444566666 7788999999998865  67999999999999999999998


Q ss_pred             HH
Q 030356          171 GN  172 (179)
Q Consensus       171 ~~  172 (179)
                      +.
T Consensus       174 ~~  175 (477)
T TIGR01301       174 YS  175 (477)
T ss_pred             HH
Confidence            75

This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.

>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters

Probab=99.51  E-value=2.5e-16  Score=122.28  Aligned_cols=140  Identities=28%  Similarity=0.532  Sum_probs=116.9

Q ss_pred             HHHHHHHHHHHHHHhhhcchh--cccCC---------CchhHHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHH
Q 030356           33 LGLVAEAMEIMILSFIGPAIK--SEWNL---------SPAQETLLTSVVFAGLLVGSYSWGFISDNYGRRKGLLGIAMLA  101 (179)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~~~--~~~~~---------s~~~~~~~~~~~~~~~~i~~~~~g~l~d~~G~r~~~~~~~~~~  101 (179)
                      ++.+..+++........+...  .+++.         ++.+.++..+...+|..+|+++.|.++||+|||+.+..+.++.
T Consensus         7 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~G~~~~g~~~d~~GRk~~~~~~~~~~   86 (451)
T PF00083_consen    7 LGGFLFGYDLGLIGSFASLLGFLQFFGWSSSESSCEKSSLLSSLLTSSFFIGAIVGALIFGFLADRYGRKPALIISALLM   86 (451)
T ss_pred             HHHHHHHHHHHHHhhHHhhhhhhhccccccccccccchHHHHHHHHHHHHhhhccccccccccccccccccccccccccc
Confidence            344566666666555443333  11111         2235689999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHH---HHHHHHHHHHHHHhhcCch-hhHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 030356          102 SVAGLLSAFSL---NYLSLVTLRGLVGIGLGSG-PVCLSWFLEFIPASNRGMWMVVISIFWTLGTIFEAALAWGN  172 (179)
Q Consensus       102 ~~~~~~~~~~~---~~~~~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~  172 (179)
                      .++.++..+++   ++..+.++|++.|++.|.. +....++.|..|+++|++..++.+..+.+|..++..++..+
T Consensus        87 ~i~~~~~~~~~~~~~~~~~~~~R~~~G~~~g~~~~~~~~~~~E~~~~~~R~~~~~~~~~~~~~G~~~~~~~~~~~  161 (451)
T PF00083_consen   87 IIGSILIAFAPSYNNFWMLLIGRFLIGFGIGGAYVVSPIYISEIAPPKHRGFLSSLFQLFWALGILLASLIGYIV  161 (451)
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            99999999999   9999999999999999998 89999999999999999999999999999988887776554

Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane

>TIGR00882 2A0105 oligosaccharide:H+ symporter

Probab=99.51  E-value=9.9e-13  Score=100.72  Aligned_cols=139  Identities=16%  Similarity=0.043  Sum_probs=99.5

Q ss_pred             HHHHHHHHHHHHhhhc-chhcccCCCchhHHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHHHH---HH
Q 030356           35 LVAEAMEIMILSFIGP-AIKSEWNLSPAQETLLTSVVFAGLLVGSYSWGFISDNYGRRKGLLGIAMLASVAGLLS---AF  110 (179)
Q Consensus        35 ~~~~~~~~~~~~~~~~-~~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~d~~G~r~~~~~~~~~~~~~~~~~---~~  110 (179)
                      .++.........++.| ++.+++|.|+.+.+++.+...++..+++++.|+++||+|||+.++.+....++.....   ..
T Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~l~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~   90 (396)
T TIGR00882        11 FFLYFFIMSAYFPFFPIWLHDVNGLSKTDTGIVFSCISLFSILFQPLFGLISDKLGLKKHLLWIISGLLVLFAPFFIYVF   90 (396)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHh
Confidence            3444444444444444 4556789999999999999999999999999999999999999987766655443321   11


Q ss_pred             HH-----HHHHHHHHHHHHHhhcCch-hhHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 030356          111 SL-----NYLSLVTLRGLVGIGLGSG-PVCLSWFLEFIPASNRGMWMVVISIFWTLGTIFEAALAWGNILL  175 (179)
Q Consensus       111 ~~-----~~~~~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~~~~  175 (179)
                      .+     ......+.+++.|++.+.. +....+..|..+  +++...+.......+|..++|.+++.+.+.
T Consensus        91 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~--~~~~~~g~~~~~~~~g~~~g~~~~g~l~~~  159 (396)
T TIGR00882        91 GPLLQSNILVGAIVGGLYLGFVFSAGAGAIEAYIEKVSR--NSNFEYGKARMFGCVGWALCASIAGILFSI  159 (396)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHhhh--hcccccchhhhhcccHHHHHHHHHhhhhcc
Confidence            11     2334456688888888877 666666666432  334566777777889999999999887654

>TIGR00879 SP MFS transporter, sugar porter (SP) family

Probab=99.51  E-value=9.7e-13  Score=102.17  Aligned_cols=135  Identities=19%  Similarity=0.135  Sum_probs=102.8

Q ss_pred             HHHHhhhcchhcccCCCchhHHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHHHHHHH-----H-----
Q 030356           43 MILSFIGPAIKSEWNLSPAQETLLTSVVFAGLLVGSYSWGFISDNYGRRKGLLGIAMLASVAGLLSAFS-----L-----  112 (179)
Q Consensus        43 ~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~d~~G~r~~~~~~~~~~~~~~~~~~~~-----~-----  112 (179)
                      .......|.+.+++|.+..+.++......++..++.++.|+++||+|||+.+..+..+.+++.+...+.     +     
T Consensus       301 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  380 (481)
T TIGR00879       301 NAIMYYSPTIFENAGVSTDHAFLVSIIVGAVNFAFTFVAIFLVDRFGRRPLLLIGAAGMAICLFVLGILGASFVTGSSKS  380 (481)
T ss_pred             eehHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhhcccCCcccc
Confidence            344556677888889999889999999999999999999999999999999998877777766655421     1     


Q ss_pred             -HHHHHHHHHHHHHh-hcCchhhHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Q 030356          113 -NYLSLVTLRGLVGI-GLGSGPVCLSWFLEFIPASNRGMWMVVISIFWTLGTIFEAALAWGNILLNS  177 (179)
Q Consensus       113 -~~~~~~~~~~l~G~-~~g~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~~~~~~  177 (179)
                       +...+....++.+. +.+..+....++.|.+|+++|++++++.+....+|..++|.+.+++.+..+
T Consensus       381 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~lg~~i~~~~~~~~~~~~~  447 (481)
T TIGR00879       381 SGNVAIVFILLFIAFFAMGWGPVPWVIVSEIFPLSLRPKGISIAVAANWLANFIVGFLFPTMLESIG  447 (481)
T ss_pred             hhHHHHHHHHHHHHHHHccccCeehhhhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence             22222222222222 222225566778999999999999999999999999999999999887543

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)

>TIGR00881 2A0104 phosphoglycerate transporter family protein

Probab=99.51  E-value=9.4e-13  Score=99.45  Aligned_cols=128  Identities=20%  Similarity=0.063  Sum_probs=93.0

Q ss_pred             cchhcccCCCchhHHHHHHHHHHHHHHHHHHHhhhhccccc-hhHHH-HHHHH-HHHHHHHHHH--HHHHHHHHHHHHHH
Q 030356           50 PAIKSEWNLSPAQETLLTSVVFAGLLVGSYSWGFISDNYGR-RKGLL-GIAML-ASVAGLLSAF--SLNYLSLVTLRGLV  124 (179)
Q Consensus        50 ~~~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~d~~G~-r~~~~-~~~~~-~~~~~~~~~~--~~~~~~~~~~~~l~  124 (179)
                      +++.+++|.++.+.+...+...++..++.++.|++.||..+ |+... ..... ..+.......  ..+.....+..++.
T Consensus       241 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  320 (379)
T TIGR00881       241 LYLTQEKGFSKEKASWAFTLYELGGLVGTLLAGWLSDKLFNGRRGPLAVFFMALIIVSLLVYWLNPAANPLMDLICLFAL  320 (379)
T ss_pred             HHHHHHhCCCHHHHHHHHHHHHHHcchhHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHH
Confidence            44456689999999999999999999999999999998643 33222 21111 1111122221  23444455566677


Q ss_pred             HhhcCch-hhHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Q 030356          125 GIGLGSG-PVCLSWFLEFIPASNRGMWMVVISIFWTLGTIFEAALAWGNILLNS  177 (179)
Q Consensus       125 G~~~g~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~~~~~~  177 (179)
                      |...... +....+..|.+|+++|+++.++++....+|..++|.+.+.+.+..|
T Consensus       321 g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g  374 (379)
T TIGR00881       321 GFLVYGPQMLIGVIASELAPKKAAGTAAGFVGFFAYLGGILAGLPLGYLADGFG  374 (379)
T ss_pred             HHHHhhhhHHHHHHHHHhcCcchhHHHHHHHHHhhhhhhhhhhhhHHHHHHhhc
Confidence            7655444 5566788999999999999999999999999999999999998765

>TIGR00882 2A0105 oligosaccharide:H+ symporter

Probab=99.51  E-value=1.2e-12  Score=100.17  Aligned_cols=121  Identities=16%  Similarity=0.073  Sum_probs=102.2

Q ss_pred             CCCchhHHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCch-hhHH
Q 030356           57 NLSPAQETLLTSVVFAGLLVGSYSWGFISDNYGRRKGLLGIAMLASVAGLLSAFSLNYLSLVTLRGLVGIGLGSG-PVCL  135 (179)
Q Consensus        57 ~~s~~~~~~~~~~~~~~~~i~~~~~g~l~d~~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~-~~~~  135 (179)
                      +.+..+.+...++..+...++.+..|++.||+|+|+.+.++..+.++........++.+.+++..++.|++.... ....
T Consensus       250 ~~~~~~~g~~~~~~~i~~~~~~~~~g~l~~r~g~~~~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~  329 (396)
T TIGR00882       250 QQGTRVFGYVTTMGELLNALIMFCAPLIINRIGAKNALLIAGTIMSVRIIGSSFATTALEVVILKMLHAFEVPFLLVGCF  329 (396)
T ss_pred             ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHH
Confidence            456667888999999999999999999999999999999988888887777677778777888889999887655 5556


Q ss_pred             HHHHHhccccchhHHHHH-HHHHHHHHHHHHHHHHHHHhccCC
Q 030356          136 SWFLEFIPASNRGMWMVV-ISIFWTLGTIFEAALAWGNILLNS  177 (179)
Q Consensus       136 ~~~~~~~~~~~r~~~~~~-~~~~~~~g~~~~~~i~~~~~~~~~  177 (179)
                      .+..+..|++.+++..+. ++....+|..++|.+++++.+..|
T Consensus       330 ~~~~~~~~~~~~at~~~~~~~~~~~lg~~~~~~l~G~l~~~~G  372 (396)
T TIGR00882       330 KYITSQFDVRLSATIYLIGFQFAKQLAMIFLSTLAGNMYDSIG  372 (396)
T ss_pred             HHHHHhCCcceEEEeehHHHHHHHHHHHHHHHHhHHHHHHhcc
Confidence            677888888888887777 788999999999999999998654

>PRK14995 methyl viologen resistance protein SmvA; Provisional

Probab=99.51  E-value=9.1e-13  Score=103.81  Aligned_cols=128  Identities=15%  Similarity=0.090  Sum_probs=107.8

Q ss_pred             hhhcc-hhcccCCCchhHHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHH
Q 030356           47 FIGPA-IKSEWNLSPAQETLLTSVVFAGLLVGSYSWGFISDNYGRRKGLLGIAMLASVAGLLSAFS---LNYLSLVTLRG  122 (179)
Q Consensus        47 ~~~~~-~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~d~~G~r~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~  122 (179)
                      ++.|. +++.+|.|+.+.+.......++..++.++.|++.||+|+|+.+..+.++.+++.+.+...   ++.+......+
T Consensus       280 ~~~~~~lq~v~g~s~~~ag~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~  359 (495)
T PRK14995        280 LLMAQELQFVHGLSPLEAGMFMLPVMVASGFSGPIAGILVSRLGLRLVATGGMALSALSFYGLAMTDFSTQQWQAWGLMA  359 (495)
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHH
Confidence            34444 445589999999999999999999999999999999999999888888877776655432   34455566788


Q ss_pred             HHHhhcCch-hhHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 030356          123 LVGIGLGSG-PVCLSWFLEFIPASNRGMWMVVISIFWTLGTIFEAALAWGNIL  174 (179)
Q Consensus       123 l~G~~~g~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~~~  174 (179)
                      +.|++.+.. +.....+.+..|+++++.+.++++....+|..+|+.+.+.+.+
T Consensus       360 l~G~g~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lG~~~G~ai~g~i~~  412 (495)
T PRK14995        360 LLGFSAASALLASTSAIMAAAPPEKAAAAGAIETMAYELGAGLGIAIFGLLLS  412 (495)
T ss_pred             HHHHhHHHHHHHHHHHHHhcCCHHhcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            899999887 7788888899999999999999999999999999999998865

>PRK10213 nepI ribonucleoside transporter; Reviewed

Probab=99.50  E-value=1.1e-11  Score=95.09  Aligned_cols=130  Identities=14%  Similarity=0.076  Sum_probs=101.4

Q ss_pred             HhhhcchhcccCCCchhHHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
Q 030356           46 SFIGPAIKSEWNLSPAQETLLTSVVFAGLLVGSYSWGFISDNYGRRKGLLGIAML-ASVAGLLSAFSLNYLSLVTLRGLV  124 (179)
Q Consensus        46 ~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~d~~G~r~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~  124 (179)
                      .+..|.+.+++|.++++.+.......++..++.++.+++.||.+ |+.++.+..+ .....++....++.+.+.+..++.
T Consensus       237 ~~~~p~~~~~~g~s~~~~g~~~~~~~~~~iig~~~~~~l~~r~~-~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~  315 (394)
T PRK10213        237 TYIRPVYMNLAGFGVDGLTLVLLSFGIASFVGTSLSSFILKRSV-KLALAGAPLVLAVSALVLTLWGSDKIVATGVAIIW  315 (394)
T ss_pred             HHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhccc-hhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence            34457777788999999999999999999999999999999965 4444444333 333334444556667777788899


Q ss_pred             HhhcCch-hhHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Q 030356          125 GIGLGSG-PVCLSWFLEFIPASNRGMWMVVISIFWTLGTIFEAALAWGNILLNS  177 (179)
Q Consensus       125 G~~~g~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~~~~~~  177 (179)
                      |++.+.. +...+.+.+..| +++++..+.+.....+|..+||.+++++.+..+
T Consensus       316 G~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~lg~~~G~~l~G~l~~~~g  368 (394)
T PRK10213        316 GLTFALVPVGWSTWITRSLA-DQAEKAGSIQVAVIQLANTCGAAIGGYALDNIG  368 (394)
T ss_pred             HHHHHhhhHHHHHHHHHHCc-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence            9998887 777888888887 567788888888889999999999999998654

>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily

Probab=99.50  E-value=7.9e-13  Score=104.30  Aligned_cols=134  Identities=22%  Similarity=0.205  Sum_probs=112.7

Q ss_pred             HHHhhhcchhcccCCCchhHHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHHHHHHH-----HHHHHHH
Q 030356           44 ILSFIGPAIKSEWNLSPAQETLLTSVVFAGLLVGSYSWGFISDNYGRRKGLLGIAMLASVAGLLSAFS-----LNYLSLV  118 (179)
Q Consensus        44 ~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~d~~G~r~~~~~~~~~~~~~~~~~~~~-----~~~~~~~  118 (179)
                      +.....+.+..+..-|+...+++.....+...+.+++.|.++||++||++++.+-++.++.....++.     .+.+.++
T Consensus        28 ~~~va~~wlv~~lt~S~~~valv~~a~~LP~~Llsl~aG~laDr~drrrili~~~~~~~~~~~~L~~l~~~~~~~~~~Ll  107 (524)
T PF05977_consen   28 MQTVALAWLVTQLTGSPLMVALVQAASTLPILLLSLFAGALADRFDRRRILILSQLLRALVALLLAVLAFFGLLSPWLLL  107 (524)
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHhCcCCHHHHH
Confidence            33333444555556688899999999999999999999999999999999999988776655444332     2667888


Q ss_pred             HHHHHHHhhcCch-hhHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Q 030356          119 TLRGLVGIGLGSG-PVCLSWFLEFIPASNRGMWMVVISIFWTLGTIFEAALAWGNILLNS  177 (179)
Q Consensus       119 ~~~~l~G~~~g~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~~~~~~  177 (179)
                      +..++.|++.+.. |...+.+.|..|+++...++++.+...++...+||.++|.++...|
T Consensus       108 ~~~fl~g~~~a~~~PA~~A~ip~lV~~~~L~~A~al~s~~~niar~iGPalgG~Lva~~G  167 (524)
T PF05977_consen  108 ILTFLLGIGSAFFNPAWQAIIPELVPKEDLPAANALNSISFNIARIIGPALGGILVAFFG  167 (524)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHHHHHhccchHHHHHHHHHH
Confidence            8999999999998 9999999999999999999999999999999999999999886543

EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].

>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]

Probab=99.49  E-value=2.3e-12  Score=97.25  Aligned_cols=138  Identities=17%  Similarity=0.148  Sum_probs=112.4

Q ss_pred             HHHHHHHHHhhhcchhcccCCCchhHHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHHHHHHHH-HHHH
Q 030356           38 EAMEIMILSFIGPAIKSEWNLSPAQETLLTSVVFAGLLVGSYSWGFISDNYGRRKGLLGIAMLASVAGLLSAFSL-NYLS  116 (179)
Q Consensus        38 ~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~d~~G~r~~~~~~~~~~~~~~~~~~~~~-~~~~  116 (179)
                      ....+..+.|..|.+.+..|+|++..+++...+.++..+|+++.|++.|| +.|+.+.....+.++..+.+.+.+ +...
T Consensus       224 ~~g~F~~ftYi~P~L~~v~g~s~~~vs~~Ll~~Gv~~~~Gn~~gGrl~dr-~~~~~l~~~~~l~a~~~l~l~~~~~~~~~  302 (394)
T COG2814         224 MTGHFALYTYIRPFLESVAGFSVSAVSLVLLAFGIAGFIGNLLGGRLADR-GPRRALIAALLLLALALLALTFTGASPAL  302 (394)
T ss_pred             HcchhhhHHhHHHHHHHccCCCHhHHHHHHHHHHHHHHHHHHHHhhhccc-cchhHHHHHHHHHHHHHHHHHHhcchHHH
Confidence            34444566777799999999999999999999999999999999999999 989988888777777776665544 4455


Q ss_pred             HHHHHHHHHhhcCch-hhHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Q 030356          117 LVTLRGLVGIGLGSG-PVCLSWFLEFIPASNRGMWMVVISIFWTLGTIFEAALAWGNILLNS  177 (179)
Q Consensus       117 ~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~~~~~~  177 (179)
                      ..+..++.|+..... ........+ .-+|.+..+.+++....++|..+|..+++.+.++.+
T Consensus       303 ~~~~~~~wg~a~~~~~~~~~~~~a~-~~p~~~~~a~sl~~aa~nlgia~GA~lGG~v~~~~g  363 (394)
T COG2814         303 ALALLFLWGFAFSPALQGLQTRLAR-LAPDAADLAGSLNVAAFNLGIALGAALGGLVLDALG  363 (394)
T ss_pred             HHHHHHHHHHHhhhhhhHHHHHhcc-cCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            566666777777665 555556666 446999999999999999999999999999998754

>PRK09528 lacY galactoside permease; Reviewed

Probab=99.49  E-value=1.5e-12  Score=100.48  Aligned_cols=138  Identities=20%  Similarity=0.063  Sum_probs=90.6

Q ss_pred             HHHHHHHHH-HHhhhcchhcccCCCchhHHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHHHHH---HH
Q 030356           36 VAEAMEIMI-LSFIGPAIKSEWNLSPAQETLLTSVVFAGLLVGSYSWGFISDNYGRRKGLLGIAMLASVAGLLSA---FS  111 (179)
Q Consensus        36 ~~~~~~~~~-~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~d~~G~r~~~~~~~~~~~~~~~~~~---~~  111 (179)
                      ++....... .+....++.+++|.|+.+.+++.+...++..+++++.|+++||+|||++++++....++......   ..
T Consensus        20 ~~~~~~~~~~~~~~~~~l~~~~g~s~~~~g~~~s~~~l~~~i~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~   99 (420)
T PRK09528         20 FFFFFIWSSWFSFFPIWLHDINGLSGTDTGIIFSANSLFALLFQPLYGLISDKLGLKKHLLWIISGLLVLFGPFFIYVFA   99 (420)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334443333 34444555666999999999999999999999999999999999999999876655544432211   11


Q ss_pred             H-----HHHHHHHHHHHHHhhcCch-hhHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 030356          112 L-----NYLSLVTLRGLVGIGLGSG-PVCLSWFLEFIPASNRGMWMVVISIFWTLGTIFEAALAWGNILL  175 (179)
Q Consensus       112 ~-----~~~~~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~~~~  175 (179)
                      +     ......+.+++.|.+.... +....+. +.. .++++..++.......+|..++|++++.+.+.
T Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~  167 (420)
T PRK09528        100 PLLQYNILLGAIVGGIYLGFGFLAGAGAIEAYI-ERV-SRRSGFEYGRARMWGSLGWALCAFIAGILFNI  167 (420)
T ss_pred             HHHHHHHHHHHHHHHHHhhhhhccchhhhhhHH-HHH-HhhccccchhhHHhhhHHHHHHHHHHHHHHhc
Confidence            1     1111222334444433333 3333333 222 24567778888888899999999999988764

>TIGR01272 gluP glucose/galactose transporter

Probab=99.49  E-value=2.8e-12  Score=95.37  Aligned_cols=145  Identities=14%  Similarity=0.074  Sum_probs=105.7

Q ss_pred             HHHHHHHHHHHHHHHHHhhhcchhc---ccCCCchhHHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHH
Q 030356           30 YAGLGLVAEAMEIMILSFIGPAIKS---EWNLSPAQETLLTSVVFAGLLVGSYSWGFISDNYGRRKGLLGIAMLASVAGL  106 (179)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~d~~G~r~~~~~~~~~~~~~~~  106 (179)
                      ...+..++............+.+.+   ++|.++++.+...+.+..+..++++..+++.||+|+|+.+..+..+.+++.+
T Consensus       144 l~~~~~f~yvg~e~~~~~w~~~yl~~~~~~g~s~~~a~~~~s~~~~~~~iGr~~~~~l~~r~g~~~~l~~~~~l~~~~~~  223 (310)
T TIGR01272       144 LGALGIFVYVGAEVSAGSFLVNFLSDPHALGLPEDQAAHFTAYTWGGAMVGRFIGSAVMPMISQGRYLAFNAFLAVLLSI  223 (310)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHH
Confidence            3444445544334333333344433   3689999999999999999999999999999999999998888877777765


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhcCch-hhHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Q 030356          107 LSAFSLNYLSLVTLRGLVGIGLGSG-PVCLSWFLEFIPASNRGMWMVVISIFWTLGTIFEAALAWGNILLNS  177 (179)
Q Consensus       107 ~~~~~~~~~~~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~~~~~~  177 (179)
                      +....++... ...-++.|++.+.. |...+...+.+|++ .+++.++. ....+|+.+.|.+.+.+.|..+
T Consensus       224 l~~~~~~~~~-~~~~~l~g~~~s~i~P~~~s~a~~~~~~~-~~~asai~-~~~~~Gg~i~P~l~G~lad~~g  292 (310)
T TIGR01272       224 GAALTHGYVA-MWFVLALGLFNSIMFPTIFSLALNALGRH-TSQGSGIL-CLAIVGGAIVPLLQGSLADCLG  292 (310)
T ss_pred             HHHHcCCHHH-HHHHHHHHHHHHHHHHHHHHHHHhhhhhh-hhhhHHHH-HHHHhcchHHHHHHHHHHHhcc
Confidence            5554443322 23455788888888 88888888888754 45666665 5566899999999999988654

Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.

>PRK10091 MFS transport protein AraJ; Provisional

Probab=99.48  E-value=9.4e-12  Score=94.97  Aligned_cols=129  Identities=16%  Similarity=0.060  Sum_probs=95.1

Q ss_pred             hhhcchhcccCCCchhHHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Q 030356           47 FIGPAIKSEWNLSPAQETLLTSVVFAGLLVGSYSWGFISDNYGRRKGLLGIAMLASVAGLLSAF-SLNYLSLVTLRGLVG  125 (179)
Q Consensus        47 ~~~~~~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~d~~G~r~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~G  125 (179)
                      +..|++.+.+|.++.+.++..+...++..+++++.|++.||+|+|+.+..+..+.+++.+.... .++.....+..++.+
T Consensus       221 ~~~~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~~r~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~  300 (382)
T PRK10091        221 YIKPYMMFISGFSETSMTFIMMLVGLGMVLGNLLSGRLSGRYSPLRIAAVTDFIIVLALLMLFFFGGMKTASLIFAFICC  300 (382)
T ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhHHHheeccccCchhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence            3446666668999999999999999999999999999999999999998888777777655443 444455555556666


Q ss_pred             hhcCch-hhHH-HHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Q 030356          126 IGLGSG-PVCL-SWFLEFIPASNRGMWMVVISIFWTLGTIFEAALAWGNILLNS  177 (179)
Q Consensus       126 ~~~g~~-~~~~-~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~~~~~~  177 (179)
                      .+.... ++.. ....+..|++.++.+.  .+....+|..++|.+++++.+.++
T Consensus       301 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~g~~~Gp~~~G~l~~~~~  352 (382)
T PRK10091        301 AGLFALSAPLQILLLQNAKGGELLGAAG--GQIAFNLGSAIGAYCGGMMLTLGL  352 (382)
T ss_pred             HHHHhhhHHHHHHHHHhCCcchHHHHHH--HHHHHHHHHHHHHHHhHHHHHccc
Confidence            655444 4333 3344444555566543  467788999999999999998644

>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms

Probab=99.48  E-value=1.1e-12  Score=98.20  Aligned_cols=126  Identities=29%  Similarity=0.363  Sum_probs=103.9

Q ss_pred             HHHHHHhhhcch-hcccCCC-chhHHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHHHHHH---HHHHH
Q 030356           41 EIMILSFIGPAI-KSEWNLS-PAQETLLTSVVFAGLLVGSYSWGFISDNYGRRKGLLGIAMLASVAGLLSAF---SLNYL  115 (179)
Q Consensus        41 ~~~~~~~~~~~~-~~~~~~s-~~~~~~~~~~~~~~~~i~~~~~g~l~d~~G~r~~~~~~~~~~~~~~~~~~~---~~~~~  115 (179)
                      .........|.+ .+++|.+ ..+.+...++..+...+++++.|++.||+++|+..........+..+....   .++..
T Consensus       221 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  300 (352)
T PF07690_consen  221 VFSGFSFFLPLYLQEVLGFSGPSQAGLLFSIFGIVGIIGSLLAGRLSDRFGRRRRLLIAILLLILGALGLLLLPFSSSPV  300 (352)
T ss_dssp             HHHHHHHHHHHHCCHHHHCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCSHHHCHHH
T ss_pred             HHHHhhcccchhhhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Confidence            333345555654 7778999 789999999999999999999999999999988877777666666654433   33556


Q ss_pred             HHHHHHHHHHhhcCch-hhHHHHHHHhccccchhHHHHHHHHHHHHHHHHHH
Q 030356          116 SLVTLRGLVGIGLGSG-PVCLSWFLEFIPASNRGMWMVVISIFWTLGTIFEA  166 (179)
Q Consensus       116 ~~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~  166 (179)
                      ..+...++.|++.+.. +....++.|..|+++|+++.++.+....+|..++|
T Consensus       301 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~igP  352 (352)
T PF07690_consen  301 WLIIALFLIGFGFGIVFPILFSLIQELVPPEYRGTAFGLFNSIGSLGGIIGP  352 (352)
T ss_dssp             HHHHHHHHHHHHHHHHCHHHHHHHHCCCHTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHCC
Confidence            6677888899988888 88999999999999999999999999999999987

These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.

>PRK15402 multidrug efflux system translocase MdfA; Provisional

Probab=99.47  E-value=5.6e-12  Score=96.83  Aligned_cols=128  Identities=20%  Similarity=0.143  Sum_probs=101.2

Q ss_pred             hcch-hcccCCCchhHHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHH
Q 030356           49 GPAI-KSEWNLSPAQETLLTSVVFAGLLVGSYSWGFISDNYGRRKGLLGIAMLASVAGLLSAFSL-----NYLSLVTLRG  122 (179)
Q Consensus        49 ~~~~-~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~d~~G~r~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~  122 (179)
                      .|.+ .+++|.++.+.++......++..++.++.|+++||+++|+.+..+.....++.......+     +...+.+..+
T Consensus       238 ~p~~~~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~  317 (406)
T PRK15402        238 SPVILISGEQLSSYEYGLLQVPVFGALIAGNLTLARLTSRRPLRSLIRMGLWPMVAGLLLAALATVISSHAYLWLTAGLS  317 (406)
T ss_pred             hHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHH
Confidence            3444 566899999999988888889999999999999999999999888877776666655432     4555667778


Q ss_pred             HHHhhcCch-hhHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Q 030356          123 LVGIGLGSG-PVCLSWFLEFIPASNRGMWMVVISIFWTLGTIFEAALAWGNILLNS  177 (179)
Q Consensus       123 l~G~~~g~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~~~~~~  177 (179)
                      +.|++.+.. +........ .++++|++..+.++....++..+++.+++++.+..+
T Consensus       318 ~~g~g~~~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~g~~~~~~l~~~~~  372 (406)
T PRK15402        318 LYAFGIGLANAGLYRLTLF-SSDVSKGTVSAAMGMLSMLIFTVGIELSKHAYLGGG  372 (406)
T ss_pred             HHHHHHHHHhhhHHHHHhh-hccccccHHHHHHHHHHHHHHHHHHHHHHhcccCCc
Confidence            888888776 555444433 345899999999999999999999999999877654

>PRK11646 multidrug resistance protein MdtH; Provisional

Probab=99.46  E-value=2.1e-12  Score=99.23  Aligned_cols=130  Identities=18%  Similarity=0.094  Sum_probs=104.2

Q ss_pred             hhhcchhcccCCCchhHHHHHHHHHHHHHHHHHHHhhhhc-cccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030356           47 FIGPAIKSEWNLSPAQETLLTSVVFAGLLVGSYSWGFISD-NYGRRKGLLGIAMLASVAGLLSAFSLNYLSLVTLRGLVG  125 (179)
Q Consensus        47 ~~~~~~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~d-~~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G  125 (179)
                      ...|.+.++.+.++.+.+++.+...++........+++.| |++.++.+..+..+.+++..++...++...+.+..++.+
T Consensus       229 ~~~p~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~  308 (400)
T PRK11646        229 LMLPIMVNDIAGSPSAVKWMYAIEACLSLTLLYPIARWSEKRFRLEHRLMAGLLIMSLSMFPIGMVSNLQQLFTLICLFY  308 (400)
T ss_pred             HhhhhhHHhhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence            3456666665557788898888888777766666666665 466666777777777777777777787777767777888


Q ss_pred             hhcCch-hhHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHHHhccC
Q 030356          126 IGLGSG-PVCLSWFLEFIPASNRGMWMVVISIFWTLGTIFEAALAWGNILLN  176 (179)
Q Consensus       126 ~~~g~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~~~~~  176 (179)
                      ++.+.. +...+++.|..|+++|++++++++....+|..++|.+++++.+..
T Consensus       309 ~g~~~~~p~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~ig~~l~G~l~~~~  360 (400)
T PRK11646        309 IGSIIAEPARETLSASLADARARGSYMGFSRLGLALGGAIGYIGGGWLFDLG  360 (400)
T ss_pred             HHHHHHHccHHHHHHhcCCcccchhhhhHHHHHHHHHHHhcccchHHHHHHH
Confidence            887777 778899999999999999999999999999999999999998864

>COG2270 Permeases of the major facilitator superfamily [General function prediction only]

Probab=99.46  E-value=1.3e-12  Score=98.24  Aligned_cols=151  Identities=19%  Similarity=0.236  Sum_probs=124.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhcchhcccCCCchhHHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHH
Q 030356           27 VLIYAGLGLVAEAMEIMILSFIGPAIKSEWNLSPAQETLLTSVVFAGLLVGSYSWGFISDNYGRRKGLLGIAMLASVAGL  106 (179)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~d~~G~r~~~~~~~~~~~~~~~  106 (179)
                      ..+++.-....++.. ........+-..++|++..|...+.....+..++++++.|+|.||+|.|+++..+.++..+.++
T Consensus       255 ~~FLiA~~~~~DGv~-til~~~~~fg~~~~gls~~~lll~g~~~~vvA~lg~ii~g~Ld~rfg~k~vl~~~lvi~~~~~~  333 (438)
T COG2270         255 VLFLIARFFYIDGVN-TILAMGGVFGAADLGLSSTELLLIGIALSVVAALGAIIAGFLDERFGSKPVLMIGLVILSIAAL  333 (438)
T ss_pred             HHHHHHHHHHHhhHH-HHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCceeehHHHHHHHHHHH
Confidence            333443333444432 2333333445568999999999999999999999999999999999999999999988888777


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhcCch-hhHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHHHhccCCC
Q 030356          107 LSAFSLNYLSLVTLRGLVGIGLGSG-PVCLSWFLEFIPASNRGMWMVVISIFWTLGTIFEAALAWGNILLNSK  178 (179)
Q Consensus       107 ~~~~~~~~~~~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~~~~~~~  178 (179)
                      ...+...-..+.+..++.|...|.. ..+-++..+..|+++-++.+|+|+.....++.++|.+.+.+.+.+++
T Consensus       334 ~~~~~~~~~~f~i~gll~g~s~G~~qA~SRSy~~~lvp~~k~~~fFglyaltgra~S~~gp~lv~v~t~iTg~  406 (438)
T COG2270         334 YLIFLEGELDFWILGLLVGTSLGGAQASSRSYLARLVPKGKEGRFFGLYALTGRAASFLGPFLVAVITQITGS  406 (438)
T ss_pred             HHHHccccHHHHHHHHHHHHhcchHHHHHHHHHHHhCCCccccceeehhhhhhhHHHHHHHHHHHHHHHHhcc
Confidence            6666665666777889999999998 88999999999999999999999999999999999999999987764

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=99.45  E-value=5.5e-12  Score=108.04  Aligned_cols=128  Identities=16%  Similarity=0.015  Sum_probs=110.8

Q ss_pred             HhhhcchhcccCCCch-hHHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030356           46 SFIGPAIKSEWNLSPA-QETLLTSVVFAGLLVGSYSWGFISDNYGRRKGLLGIAMLASVAGLLSAFSLNYLSLVTLRGLV  124 (179)
Q Consensus        46 ~~~~~~~~~~~~~s~~-~~~~~~~~~~~~~~i~~~~~g~l~d~~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  124 (179)
                      ..+.+++.+++|.+.. +.+++.+...++.++++++.|++.||+++++.+.++.++.+++.++..+.++...+++..++.
T Consensus       253 ~~~~~~~~~~~g~s~~~~~g~~~~~~~ig~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  332 (1146)
T PRK08633        253 ANFPAYAKEVLGLDNTFQVQYLLAASAIGIGIGSLLAGRLSGRHIELGLVPLGALGLALSLFLLPTAPSLASVLVLFFLF  332 (1146)
T ss_pred             HhhHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCceEccchhHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence            3344555667899998 999999999999999999999999999999999888888888887777777888888888999


Q ss_pred             HhhcCch-hhHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 030356          125 GIGLGSG-PVCLSWFLEFIPASNRGMWMVVISIFWTLGTIFEAALAWGNI  173 (179)
Q Consensus       125 G~~~g~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~~  173 (179)
                      |++.+.. +...+++.+..|+++|++++++.+....+|..+++.+++.+.
T Consensus       333 g~~~~~~~~~~~~~~~~~~p~~~rg~~~~~~~~~~~lg~~~~~~~~~~l~  382 (1146)
T PRK08633        333 GFSAGLFIVPLNALIQFRAPEKELGKVLAANNFLQNVGMLLFLALTTLFS  382 (1146)
T ss_pred             HHHHHHhhHHHHHHHhhcCCccchhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999887 778899999999999999999999999999888887777654

>PRK11663 regulatory protein UhpC; Provisional

Probab=99.45  E-value=9.5e-12  Score=96.52  Aligned_cols=136  Identities=13%  Similarity=-0.023  Sum_probs=90.8

Q ss_pred             HHHHHhhhcchh-cccCCCchhHHHHHHHHHHHHHHHHHHHhhhhccc--cchhHH-HHHHHHHHHHHHHHH--HHHHHH
Q 030356           42 IMILSFIGPAIK-SEWNLSPAQETLLTSVVFAGLLVGSYSWGFISDNY--GRRKGL-LGIAMLASVAGLLSA--FSLNYL  115 (179)
Q Consensus        42 ~~~~~~~~~~~~-~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~d~~--G~r~~~-~~~~~~~~~~~~~~~--~~~~~~  115 (179)
                      ........|.+. +++|.+..+.+...+.+.++..++.++.|+++||+  ++|+.. ....+...+......  ...+..
T Consensus       259 ~~~~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~~g~~~~g~l~dr~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~  338 (434)
T PRK11663        259 RAAINDWGNLYMSETLGVDLVTANSAVSMFELGGFIGALVAGWGSDKLFNGNRGPMNLIFAAGILLSVGSLWLMPFASYV  338 (434)
T ss_pred             HHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHhccCCccHHHHHHHHHHHHHHHHHHHcccccHH
Confidence            333334444444 67899999999999999999999999999999998  333332 221111111111111  122233


Q ss_pred             HHHHHHHHHHhhcCch-hhHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Q 030356          116 SLVTLRGLVGIGLGSG-PVCLSWFLEFIPASNRGMWMVVISIFWTLGTIFEAALAWGNILLNS  177 (179)
Q Consensus       116 ~~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~~~~~~  177 (179)
                      ......+..|++.... ........|.+|+++|++++++.+....+|..++|.+.+++.+..+
T Consensus       339 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~p~~~g~l~~~~g  401 (434)
T PRK11663        339 MQAACFFTIGFFVFGPQMLIGMAAAECSHKEAAGAATGFVGLFAYLGAALSGYPLAKVLEIWH  401 (434)
T ss_pred             HHHHHHHHHHHHHhhHHHHHHHHHHhcccHhhHHhHHHHHHHHHHHHHHHhcccHHHHHHhcc
Confidence            3333344455443322 3334567899999999999999999999999999999999998755

>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism]

Probab=99.44  E-value=2.6e-12  Score=101.05  Aligned_cols=153  Identities=16%  Similarity=0.212  Sum_probs=135.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhcchhcccCCCchhHHHHHHHHHHHHHHHHHHHhhhhcccc--chhHHHHHHHHHHH
Q 030356           26 LVLIYAGLGLVAEAMEIMILSFIGPAIKSEWNLSPAQETLLTSVVFAGLLVGSYSWGFISDNYG--RRKGLLGIAMLASV  103 (179)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~d~~G--~r~~~~~~~~~~~~  103 (179)
                      +.+....+...+....+......+|.+.++.+.++.+++.+.++.++...++++..|+++|+..  ++.+..++.+..++
T Consensus       298 ~~fl~~~~~~~~~~~g~~~p~~~l~~~~~~~g~~~~~aa~l~Siigi~~i~gRi~~G~laD~~~~~~~~~~~~~ll~~gl  377 (509)
T KOG2504|consen  298 PKFLLLALSNLFAYLGFNVPFVYLPSYAKSLGLSSNDAAFLLSIIGVSDIIGRIILGLLADKPGIRALVLFLLTLLIAGL  377 (509)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhhhHHHHHHHHHhhhhhhhhhhhhcCccccchHHHHHHHHHHHHH
Confidence            4455666666777777788888889999999999999999999999999999999999999988  45566777888888


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhcCch-hhHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHHHhccCCC
Q 030356          104 AGLLSAFSLNYLSLVTLRGLVGIGLGSG-PVCLSWFLEFIPASNRGMWMVVISIFWTLGTIFEAALAWGNILLNSK  178 (179)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~~~~~~~  178 (179)
                      ....+++.+++..+.....+.|++.|.. ......+.|..+.++-..+.|+.....+++..++|++++++.|.+++
T Consensus       378 ~~~~~p~~~~~~~l~~~~~~fG~~~g~~~~l~~~i~~~~~g~~~l~~a~Gl~l~~~gi~~l~gpPiag~~~d~tg~  453 (509)
T KOG2504|consen  378 ARLFLPFATTYVGLIVFSILFGFCVGSFSSLTPVILVDLVGLEKLSNAYGLLLLFQGIGALVGPPIAGLLYDITGN  453 (509)
T ss_pred             HHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhhcchHHHHHHHHhHHHHHcCcccceeeeeccCC
Confidence            8888899999999999999999999988 66667889999999999999999999999999999999999888765

>PRK09848 glucuronide transporter; Provisional

Probab=99.43  E-value=6e-12  Score=97.96  Aligned_cols=134  Identities=13%  Similarity=0.050  Sum_probs=103.8

Q ss_pred             HHHHhhhcchhcc-cCCCchhHHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHHHHHHHH--HHHHHHH
Q 030356           43 MILSFIGPAIKSE-WNLSPAQETLLTSVVFAGLLVGSYSWGFISDNYGRRKGLLGIAMLASVAGLLSAFSL--NYLSLVT  119 (179)
Q Consensus        43 ~~~~~~~~~~~~~-~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~d~~G~r~~~~~~~~~~~~~~~~~~~~~--~~~~~~~  119 (179)
                      .......|++.++ +|.++...++......++..++.++++++.||+|+|+.+..+.++.+++.+.+.+.+  +.+.+.+
T Consensus       245 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~l~~r~g~~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~  324 (448)
T PRK09848        245 FAVSASSLFYVRYVLNDTGLFTVLVLVQNLVGTVASAPLVPGMVARIGKKNTFLIGALLGTCGYLLFFWVSVWSLPVALV  324 (448)
T ss_pred             HHHhhhheeeEeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCchhHHHHHH
Confidence            3334445655554 776666555555555777889999999999999999999999888887777666543  5566666


Q ss_pred             HHHHHHhhcCch-hhHHHHHHHhcccc-------chhHHHHHHHHHHHHHHHHHHHHHHHHhccC
Q 030356          120 LRGLVGIGLGSG-PVCLSWFLEFIPAS-------NRGMWMVVISIFWTLGTIFEAALAWGNILLN  176 (179)
Q Consensus       120 ~~~l~G~~~g~~-~~~~~~~~~~~~~~-------~r~~~~~~~~~~~~~g~~~~~~i~~~~~~~~  176 (179)
                      ..++.|++.+.. +...+...|..|.+       ++|...++++....+|..+++.+.+.+.+..
T Consensus       325 ~~~l~g~G~~~~~~~~~al~~~~~~~~~~~~g~r~~G~~~~~~~~~~klg~aig~~i~g~~l~~~  389 (448)
T PRK09848        325 ALAIASIGQGVTMTVMWALEADTVEYGEYLTGVRIEGLTYSLFSFTRKCGQAIGGSIPAFILGLS  389 (448)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            778889998888 77888888887654       4599999999999999999999999887653

>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily

Probab=99.43  E-value=1.8e-11  Score=93.00  Aligned_cols=121  Identities=18%  Similarity=0.247  Sum_probs=91.8

Q ss_pred             hhcch-hcccCCCchhHHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHH
Q 030356           48 IGPAI-KSEWNLSPAQETLLTSVVFAGLLVGSYSWGFISDNYGRRKGLLGIAMLASVAGLLSAFS-----LNYLSLVTLR  121 (179)
Q Consensus        48 ~~~~~-~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~d~~G~r~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~  121 (179)
                      ..|.+ .+++|.++.+.+.+.+...++..+++++.|++.||+|+|+.+..+..+..++.+++...     ++...+....
T Consensus       228 ~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  307 (385)
T TIGR00710       228 GAPFVYIDIMGVSPSVFGLLFALNIIAMIFGGFLNGRFIKKWGAKSLLRMGLILFAVSAVLLEITAILGLGSWAMIIGPM  307 (385)
T ss_pred             cChHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence            33444 45789999999999999999999999999999999999999888877777666555443     2334445566


Q ss_pred             HHHHhhcCch-hhHHHHHHHhccccchhHHHHHHHHHHHH-HHHHHHHHH
Q 030356          122 GLVGIGLGSG-PVCLSWFLEFIPASNRGMWMVVISIFWTL-GTIFEAALA  169 (179)
Q Consensus       122 ~l~G~~~g~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~-g~~~~~~i~  169 (179)
                      ++.|++.+.. +.......|..| ++|+++.++++..... |...+|.++
T Consensus       308 ~~~g~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~g~i~~~~~~  356 (385)
T TIGR00710       308 MFVGIGNSMISSIAMAYALEDFP-HVAGTASALFGTLRLVLGAIVGYLVS  356 (385)
T ss_pred             HHHHHHHHHHHHHHHHHHhccCc-ccchHHHHHHHHHHHHHHHHHHHHHH
Confidence            7788888777 777777788876 6799999997766654 555555544

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.

>PRK10054 putative transporter; Provisional

Probab=99.43  E-value=5.1e-12  Score=96.90  Aligned_cols=123  Identities=12%  Similarity=0.001  Sum_probs=101.6

Q ss_pred             cccCCCchhHHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhhcCch-
Q 030356           54 SEWNLSPAQETLLTSVVFAGLLVGSYSWGFISDNYGRRKGLLGIAMLASVAGLLSAFS-LNYLSLVTLRGLVGIGLGSG-  131 (179)
Q Consensus        54 ~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~d~~G~r~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~G~~~g~~-  131 (179)
                      ++.+.++...+.+.+...+.....+++.|++.||+++|+.+..+..+..++.....+. ++.+.+.+..++.|++.+.. 
T Consensus       237 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~  316 (395)
T PRK10054        237 ADSDFAEKVVAVVLPVNAAMVVSLQYSVGRRLNAANIRPLMTAGTLCFVIGLVGFIFSGNSLLLWGMSAAVFTVGEIIYA  316 (395)
T ss_pred             cccchHHHHHHHHHHhhhhheeeehhHHHHHHccCCchhHHHHHHHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHH
Confidence            3456677777888888888888888999999999999999998888877777666654 56666677788999998776 


Q ss_pred             hhHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Q 030356          132 PVCLSWFLEFIPASNRGMWMVVISIFWTLGTIFEAALAWGNILLNS  177 (179)
Q Consensus       132 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~~~~~~  177 (179)
                      +.....+.+..|++.|+++.+..+ ...+|..++|.+++.+.|+.+
T Consensus       317 p~~~~~~~~~~p~~~~~~~~~~~~-~~~~G~~~Gp~~~G~l~~~~g  361 (395)
T PRK10054        317 PGEYMLIDHIAPPGMKASYFSAQS-LGWLGAAINPLVSGVILTTLP  361 (395)
T ss_pred             hhHHHHHHHhCCcccceehHhHHH-HHHHHHHHHHHHHHHHHHHcC
Confidence            777888999999999999988765 556899999999999998765

>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional

Probab=99.43  E-value=1e-11  Score=96.82  Aligned_cols=133  Identities=14%  Similarity=0.059  Sum_probs=89.4

Q ss_pred             HHhhhcchh-cccCCCchhHHHHHHHHHHHHHHHHHHHhhhhccc--cchhHHH-HHHHHHHHHHHHHHH--HHHHHHHH
Q 030356           45 LSFIGPAIK-SEWNLSPAQETLLTSVVFAGLLVGSYSWGFISDNY--GRRKGLL-GIAMLASVAGLLSAF--SLNYLSLV  118 (179)
Q Consensus        45 ~~~~~~~~~-~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~d~~--G~r~~~~-~~~~~~~~~~~~~~~--~~~~~~~~  118 (179)
                      ...+.|.+. ++.|.+..+.+....++.++..++.++.|+++||+  +||+... ....+..++.+....  .++.....
T Consensus       272 ~~~~~P~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~G~l~dr~~~~r~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  351 (452)
T PRK11273        272 ILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWLNPAGNPTVDM  351 (452)
T ss_pred             HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCcchHHHHHHHHHHHHHHHHHHhcccChHHHH
Confidence            334445554 55789999999999999999999999999999999  5554322 222222333222222  22333334


Q ss_pred             HHHHHHHhhcCch-hhHHHHHHHhccccchhHHHHHHHHHHHHHHHH-HHHHHHHHhccCC
Q 030356          119 TLRGLVGIGLGSG-PVCLSWFLEFIPASNRGMWMVVISIFWTLGTIF-EAALAWGNILLNS  177 (179)
Q Consensus       119 ~~~~l~G~~~g~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~-~~~i~~~~~~~~~  177 (179)
                      +..++.|.+.... .....+..|.+|+++|++++++.+....+|+.+ +|.+.+++.+..+
T Consensus       352 ~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~g~~v~g~l~~~~g  412 (452)
T PRK11273        352 ACMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFG  412 (452)
T ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHcChhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHhc
Confidence            4445555543333 334456789999999999999998888887654 7999999988754

>TIGR00887 2A0109 phosphate:H+ symporter

Probab=99.43  E-value=1.3e-11  Score=97.54  Aligned_cols=133  Identities=17%  Similarity=0.029  Sum_probs=90.1

Q ss_pred             HHHHhhhcchhcccCCCchhHHH------------HHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHHHHHH
Q 030356           43 MILSFIGPAIKSEWNLSPAQETL------------LTSVVFAGLLVGSYSWGFISDNYGRRKGLLGIAMLASVAGLLSAF  110 (179)
Q Consensus        43 ~~~~~~~~~~~~~~~~s~~~~~~------------~~~~~~~~~~i~~~~~g~l~d~~G~r~~~~~~~~~~~~~~~~~~~  110 (179)
                      +......|.+.++.|.+..+.+.            ...+..++..++.++.+++.||+|||+.++.+..+.+++..+...
T Consensus       305 y~~~~~~p~i~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~l~dr~gRR~~l~~~~~~~~~~~~~l~~  384 (502)
T TIGR00887       305 YGVNLNQKVILSAIGYSPPAATNNAYEELYKTAVGNLIIALAGTVPGYWVTVFLVDIIGRKPIQLMGFFILTVLFFVLGF  384 (502)
T ss_pred             HccccccHHHHHHHcCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHH
Confidence            33344457777777776542211            233445566778899999999999999998888777766655543


Q ss_pred             HH----HHHHHHHHHHHHHhh-cCchhhHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 030356          111 SL----NYLSLVTLRGLVGIG-LGSGPVCLSWFLEFIPASNRGMWMVVISIFWTLGTIFEAALAWGNILL  175 (179)
Q Consensus       111 ~~----~~~~~~~~~~l~G~~-~g~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~~~~  175 (179)
                      ..    +...+....+...+. .+..+....+..|.+|++.|+++.++.+....++++++|.+.+++.+.
T Consensus       385 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~p~~~R~~~~g~~~~~~~~~~~~~~~~~~~l~~~  454 (502)
T TIGR00887       385 AYNHLSTHGFLAIYVLAQFFANFGPNATTFIVPGEVFPTRYRSTAHGISAASGKAGAIIGQFGFLYLAQH  454 (502)
T ss_pred             HHHhcchhHHHHHHHHHHHHHhcCCCchhhhhhhccCchhHHHHHHHHHHHHhhhHHHHHHHHhhhhhcc
Confidence            22    111111111122221 222255667789999999999999999999999999999999988874

This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).

>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]

Probab=99.42  E-value=7e-13  Score=101.59  Aligned_cols=132  Identities=17%  Similarity=0.131  Sum_probs=114.1

Q ss_pred             HhhhcchhcccC----CCchhHHHHHHHHHHHHHHHHHHHhhhhcc-ccchhHHHHHHHHHHHHHHHHHHHH--HHHHHH
Q 030356           46 SFIGPAIKSEWN----LSPAQETLLTSVVFAGLLVGSYSWGFISDN-YGRRKGLLGIAMLASVAGLLSAFSL--NYLSLV  118 (179)
Q Consensus        46 ~~~~~~~~~~~~----~s~~~~~~~~~~~~~~~~i~~~~~g~l~d~-~G~r~~~~~~~~~~~~~~~~~~~~~--~~~~~~  118 (179)
                      ..+.-++..+++    +|++++.-+.+.+..-.-+...+.||++|| +|+|+.++.+.++++++.+..+.++  +...++
T Consensus        42 aiL~~Yl~~~~~~gLg~~~~~A~~l~~~y~slVY~t~i~GG~laDr~LG~~~tI~lGail~~iGh~~L~~~~~~~~~gl~  121 (498)
T COG3104          42 AILILYLYYQLGDGLGFDETHATGLFSAYGSLVYLTPIIGGWLADRVLGTRRTIVLGAILMAIGHLVLAISSVSGPGGLY  121 (498)
T ss_pred             HHHHHHHHHhccccCCcChHhhHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhccccccccHHH
Confidence            333344444444    999999888888888888899999999999 8999999999999999999998874  677888


Q ss_pred             HHHHHHHhhcCch-hhHHHHHHHhccccc--hhHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Q 030356          119 TLRGLVGIGLGSG-PVCLSWFLEFIPASN--RGMWMVVISIFWTLGTIFEAALAWGNILLNS  177 (179)
Q Consensus       119 ~~~~l~G~~~g~~-~~~~~~~~~~~~~~~--r~~~~~~~~~~~~~g~~~~~~i~~~~~~~~~  177 (179)
                      ++..++++|.|.. +...++++|.+|+++  |-.+++++..+.++|+.++|++.+++.+..+
T Consensus       122 i~L~~I~iG~Gl~K~NiS~llg~ly~~~DprrD~gFt~fY~~iNiGsl~~p~i~~~~~~~~g  183 (498)
T COG3104         122 IGLALIIVGTGLFKPNISSLLGELYPKDDPRRDGGFTLFYMGINIGSLIAPIITGLLAINYG  183 (498)
T ss_pred             HHHHHHHhccccccccHHHHHHHhcCCCCcccCCCccEEEEEeehHHHHHHHHHHHHHHhhC
Confidence            9999999999999 999999999998744  6788899999999999999999999988765

>PF13347 MFS_2: MFS/sugar transport protein

Probab=99.42  E-value=3.3e-12  Score=98.88  Aligned_cols=142  Identities=21%  Similarity=0.268  Sum_probs=116.0

Q ss_pred             HHHHHHHHHHHHhhhcchhcc-cCCCchhHHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHHHHHHHH-
Q 030356           35 LVAEAMEIMILSFIGPAIKSE-WNLSPAQETLLTSVVFAGLLVGSYSWGFISDNYGRRKGLLGIAMLASVAGLLSAFSL-  112 (179)
Q Consensus        35 ~~~~~~~~~~~~~~~~~~~~~-~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~d~~G~r~~~~~~~~~~~~~~~~~~~~~-  112 (179)
                      .++............+++.++ ++.+ +..+.+.....++..++.+++++++||+|+|+.+..+..+.+++.++..+.+ 
T Consensus       234 ~~~~~~~~~~~~~~~~y~~~~vl~~~-~~~~~~~~~~~~~~~v~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~~~  312 (428)
T PF13347_consen  234 FFLQWLAFALMNTFLPYYFTYVLGNE-GLISIFMLIFFVASIVGSPLWGRLSKRFGKKKVYIIGLLLAALGFLLLFFLGP  312 (428)
T ss_pred             HHHHHhhhhhhhhHHHHHHHHHhcCc-hhhHHHHHHHHHHHHHHHHHHHHHHHHccceeehhhhHHHHHHHHHHHHHHHh
Confidence            344444444445455666655 4433 6778888899999999999999999999999999999999999998887775 


Q ss_pred             -HHHHHHHHHHHHHhhcCch-hhHHHHHHHhccc-------cchhHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Q 030356          113 -NYLSLVTLRGLVGIGLGSG-PVCLSWFLEFIPA-------SNRGMWMVVISIFWTLGTIFEAALAWGNILLNS  177 (179)
Q Consensus       113 -~~~~~~~~~~l~G~~~g~~-~~~~~~~~~~~~~-------~~r~~~~~~~~~~~~~g~~~~~~i~~~~~~~~~  177 (179)
                       +.+.+++..++.|++.+.. ....++++|..+.       ++.|...+.++....++..+++.+.+.+.+..|
T Consensus       313 ~~~~~~~i~~~l~gi~~~~~~~~~~a~~ad~id~~e~~tg~r~~g~~~s~~~~~~k~~~~la~~i~g~~l~~~G  386 (428)
T PF13347_consen  313 GSPWLVLILFILAGIGYGAFFVIPWAMLADVIDYDEWKTGRRREGMYFSVNSFFIKIGQGLAGAIVGLLLALVG  386 (428)
T ss_pred             hhHHHHHHHHHHhHhhhcccccccccccccchhhHHHhcCCCchHHHHHhhhhhhHHHHHHHHHHHHHHHHHhC
Confidence             8899999999999999998 7788888887763       445999999999999999999999998886543

>PF03825 Nuc_H_symport: Nucleoside H+ symporter

Probab=99.41  E-value=9.5e-12  Score=95.40  Aligned_cols=140  Identities=14%  Similarity=0.004  Sum_probs=114.0

Q ss_pred             HHHHHHHHHhhhcchhcccC-CCchhHHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHHHHHHH-HHHH
Q 030356           38 EAMEIMILSFIGPAIKSEWN-LSPAQETLLTSVVFAGLLVGSYSWGFISDNYGRRKGLLGIAMLASVAGLLSAFS-LNYL  115 (179)
Q Consensus        38 ~~~~~~~~~~~~~~~~~~~~-~s~~~~~~~~~~~~~~~~i~~~~~g~l~d~~G~r~~~~~~~~~~~~~~~~~~~~-~~~~  115 (179)
                      ..........+.+.+.+|.| .+.+..+.+.++..++.++.-...+++..|+|.|+++.++.+..++=..+++.. ++.+
T Consensus       219 ~~~~~~~~~~f~~~yl~~~gg~~~~~~g~~~~l~~~aEi~~f~~~~~~~~r~g~~~ll~~a~~~~~vR~~l~a~~~~~~~  298 (400)
T PF03825_consen  219 IGISHAAYYTFFSIYLQELGGYSGSTIGILWALGVVAEIPFFFFSGRFLKRFGIKWLLLLALVAYAVRWLLYAYFSDPWP  298 (400)
T ss_pred             HHHHHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhcCCcH
Confidence            33333433444455566766 777788888889999999999999999999999999999999999999888877 4433


Q ss_pred             HHH----HHHHHHHhhcCch-hhHHHHHHHhccccchhHHHHHHHH-HHHHHHHHHHHHHHHHhccCC
Q 030356          116 SLV----TLRGLVGIGLGSG-PVCLSWFLEFIPASNRGMWMVVISI-FWTLGTIFEAALAWGNILLNS  177 (179)
Q Consensus       116 ~~~----~~~~l~G~~~g~~-~~~~~~~~~~~~~~~r~~~~~~~~~-~~~~g~~~~~~i~~~~~~~~~  177 (179)
                      ...    ....+.|+..+.. .....++.+..|++.|++++++++. ..++|..++..++|++.+..+
T Consensus       299 ~~~~~~~l~q~lhG~tf~~~~~a~~~yi~~~~p~~~~at~Q~l~~~~~~Glg~~iG~~igG~l~~~~g  366 (400)
T PF03825_consen  299 FIVALQLLGQLLHGLTFGLFHAASVRYIDRIAPPELRATAQGLYSALSFGLGGAIGSLIGGWLYDAFG  366 (400)
T ss_pred             HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhc
Confidence            332    2345799999998 8899999999999999999999765 678999999999999998765

>PRK11010 ampG muropeptide transporter; Validated

Probab=99.41  E-value=1.7e-11  Score=96.58  Aligned_cols=132  Identities=12%  Similarity=0.141  Sum_probs=99.2

Q ss_pred             HhhhcchhcccCCCchhHHHHHH-HHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHHHH---HHH-HHHHHHHHH
Q 030356           46 SFIGPAIKSEWNLSPAQETLLTS-VVFAGLLVGSYSWGFISDNYGRRKGLLGIAMLASVAGLLS---AFS-LNYLSLVTL  120 (179)
Q Consensus        46 ~~~~~~~~~~~~~s~~~~~~~~~-~~~~~~~i~~~~~g~l~d~~G~r~~~~~~~~~~~~~~~~~---~~~-~~~~~~~~~  120 (179)
                      ....|++.+++|.|+++.++... ...++..++.++.|+++||+|+|+.+.++.++.++....+   ... ++...+...
T Consensus       243 ~~~~~~l~~~~G~s~~~~g~~~~~~g~i~~iiG~ll~G~L~dr~g~~~~l~i~~~l~~l~~l~~~~l~~~~~~~~~l~~~  322 (491)
T PRK11010        243 SLTTTFLIRGVGFDAGEVGLVNKTLGLLATIVGALYGGILMQRLSLFRALMIFGILQGVSNAGYWLLSITDKNLYSMGAA  322 (491)
T ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHH
Confidence            33446666778999999999874 6668999999999999999999988776665544443322   222 244344444


Q ss_pred             HHHHHhhcCch-hhHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Q 030356          121 RGLVGIGLGSG-PVCLSWFLEFIPASNRGMWMVVISIFWTLGTIFEAALAWGNILLNS  177 (179)
Q Consensus       121 ~~l~G~~~g~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~~~~~~  177 (179)
                      .++..++.+.. +...+...+..+++.+++..++.+....+|..+++.+.+++.+..|
T Consensus       323 ~~l~~~~~g~~~~~~~a~~~~l~~~~~~~t~~gl~~s~~~lg~~~~~~~~G~l~~~~G  380 (491)
T PRK11010        323 VFFENLCGGMGTAAFVALLMTLCNKSFSATQFALLSALSAVGRVYVGPVAGWFVEAHG  380 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            55555555555 6667888999999999999999999999999999889999988654

>PRK10077 xylE D-xylose transporter XylE; Provisional

Probab=99.41  E-value=2.7e-11  Score=94.85  Aligned_cols=129  Identities=15%  Similarity=0.057  Sum_probs=97.9

Q ss_pred             HHHhhhcchhcccCCCchhHHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHHHHHHHH--HH--HHHHH
Q 030356           44 ILSFIGPAIKSEWNLSPAQETLLTSVVFAGLLVGSYSWGFISDNYGRRKGLLGIAMLASVAGLLSAFSL--NY--LSLVT  119 (179)
Q Consensus        44 ~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~d~~G~r~~~~~~~~~~~~~~~~~~~~~--~~--~~~~~  119 (179)
                      ...++.|.+.++.|.+..+..+......+...++.++.+++.||+|||+.++.+.++.+++.+.+....  +.  .....
T Consensus       289 ~~~~~~p~i~~~~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~g~r~~~i~~~~~~~v~~~~l~~~~~~~~~~~~~~~  368 (479)
T PRK10077        289 VVLYYAPEIFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVALL  368 (479)
T ss_pred             HHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHhHHHHHHHHHHHHHHHhcCcccHHHHH
Confidence            344556788888898888888888888899999999999999999999999999988888877665432  11  12222


Q ss_pred             HHHHHHhhcCc-h-hhHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 030356          120 LRGLVGIGLGS-G-PVCLSWFLEFIPASNRGMWMVVISIFWTLGTIFEAALAWGN  172 (179)
Q Consensus       120 ~~~l~G~~~g~-~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~  172 (179)
                      ..++.+.+.+. . +....++.|.+|+++|++++++.+....+|.++++.+...+
T Consensus       369 ~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~p~~  423 (479)
T PRK10077        369 SMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWIANYFVSWTFPMM  423 (479)
T ss_pred             HHHHHHHHHhccccchhHHHhHhhCChhHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence            33344444433 3 66789999999999999999999999999888886655443

>TIGR00889 2A0110 nucleoside transporter

Probab=99.41  E-value=9.4e-12  Score=96.16  Aligned_cols=131  Identities=11%  Similarity=-0.055  Sum_probs=96.0

Q ss_pred             HHHHHHHHHH-HhhhcchhcccCCCchhHHHHHHHHHHHHHHHHHHHhhhhccccc-hhHHHHHHHHHHHHHHHHHHHHH
Q 030356           36 VAEAMEIMIL-SFIGPAIKSEWNLSPAQETLLTSVVFAGLLVGSYSWGFISDNYGR-RKGLLGIAMLASVAGLLSAFSLN  113 (179)
Q Consensus        36 ~~~~~~~~~~-~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~d~~G~-r~~~~~~~~~~~~~~~~~~~~~~  113 (179)
                      ++.+..+... +++.+++.+++|++.+|.|++.+...++..++++++|+++||+|| |+++.++.+...+......+.++
T Consensus        12 ~~~~~~~~~~~~~l~~~l~~~~g~s~~~iGl~~a~~~~~~~i~~~~~g~l~dr~g~~r~~~~~~~~~~~~~~~~~~~~~~   91 (418)
T TIGR00889        12 FLQWFIWGSWLVTLGSYMSKTLHFSGAEIGWVYSSTGIAAILMPILVGIIADKWLSAQKVYAVCHFAGALLLFFAAQVTT   91 (418)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhcC
Confidence            3444444444 555567778899999999999999999999999999999999965 77888888887777777778888


Q ss_pred             HHHHHHHHHHHHhhcCch-hhHHHHHH--------HhccccchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 030356          114 YLSLVTLRGLVGIGLGSG-PVCLSWFL--------EFIPASNRGMWMVVISIFWTLGTIFEAALAWGN  172 (179)
Q Consensus       114 ~~~~~~~~~l~G~~~g~~-~~~~~~~~--------~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~  172 (179)
                      ++.+++.+++.|++.+.. +...+...        |......|.+..+      .+|..++|.+++.+
T Consensus        92 ~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~g~~~~~~~~~~r~~G------~lG~~ig~~l~g~l  153 (418)
T TIGR00889        92 PAGMFPVLLANSLAYMPTIALTNSISYANLPQAGLDVVTDFPPIRVMG------TIGFIAAMWAVSLL  153 (418)
T ss_pred             HHHHHHHHHHHHHHHccHHHHHHHHHHHHHhhcCCCchhcCCCeeeeh------hHHHHHHHHHHHHh
Confidence            888889999999987766 55444321        2222223444444      35677777777766

This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.

>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only]

Probab=99.40  E-value=5.2e-12  Score=97.48  Aligned_cols=154  Identities=19%  Similarity=0.138  Sum_probs=126.5

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhcc--cCCCchhHHHHHHHHHHHHHHHHHHHhhhhccccc-hhHHHHHH
Q 030356           22 KFQILVLIYAGLGLVAEAMEIMILSFIGPAIKSE--WNLSPAQETLLTSVVFAGLLVGSYSWGFISDNYGR-RKGLLGIA   98 (179)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~d~~G~-r~~~~~~~   98 (179)
                      +.+|+.+.+..+..++......+...-.-.+.++  .+.+.+-.|++.+...++.+++++..|+.+.|.+. |++++.+.
T Consensus        30 ~t~wrsi~l~~~~sfl~~v~~sI~~~s~wpYl~~lD~~A~~~ffG~viaa~slg~~i~~liF~~Ws~k~~~~k~Pli~s~  109 (488)
T KOG2325|consen   30 KTNWRSIYLALLNSFLVAVQFSIYLTSMWPYLQKLDPTATATFFGLVIAASSLGHAIFSLIFGIWSNKTGSVKKPLIVSF  109 (488)
T ss_pred             CCchHhHHHHHHHHHHHhhhheEEEeecchhhhhcCCCCCcchhhHHHHHHHHHHHhcchhhcccccccCCcccCHHHHH
Confidence            4556766777667777776666555444445555  55567778999999999999999999999999997 88999999


Q ss_pred             HHHHHHHHHH-HHH---H-HHHHHHHHHHHHHhhcCchhhHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 030356           99 MLASVAGLLS-AFS---L-NYLSLVTLRGLVGIGLGSGPVCLSWFLEFIPASNRGMWMVVISIFWTLGTIFEAALAWGNI  173 (179)
Q Consensus        99 ~~~~~~~~~~-~~~---~-~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~~  173 (179)
                      ++.+++.++. +..   + ..+.++++|++.|+|.+.....-.++++....++|.++++....+..+|..+||.+...+.
T Consensus       110 ii~~~g~llY~~l~~~~~~~~y~mL~~R~l~Gvg~~n~a~lR~Y~a~~s~~~dR~rA~a~~~~~~vlg~ilGp~~q~~f~  189 (488)
T KOG2325|consen  110 LIAIIGNLLYLALAYVPNGVKYLMLVARILTGVGVGNFAVLRAYIADASTVEDRPRAFAATSGGFVLGIILGPTIQLAFT  189 (488)
T ss_pred             HHHHHHHHHHHHHHhcccchHHHHHHHHHHcCcCcccHHHHHHHHHhccCccchHHHHHHhhhHHHHHHHHhHHHHHHHh
Confidence            9999999887 332   2 5678899999999999888889999999988999999999999999999999999887766


Q ss_pred             cc
Q 030356          174 LL  175 (179)
Q Consensus       174 ~~  175 (179)
                      ..
T Consensus       190 ~L  191 (488)
T KOG2325|consen  190 PL  191 (488)
T ss_pred             hh
Confidence            43

>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]

Probab=99.40  E-value=8.6e-12  Score=92.27  Aligned_cols=140  Identities=17%  Similarity=0.103  Sum_probs=123.8

Q ss_pred             HHHHHHHHHhhhcchhcccCCCchhHHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030356           38 EAMEIMILSFIGPAIKSEWNLSPAQETLLTSVVFAGLLVGSYSWGFISDNYGRRKGLLGIAMLASVAGLLSAFSLNYLSL  117 (179)
Q Consensus        38 ~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~d~~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~  117 (179)
                      --.......+.++.+.+|+|+|.+.++.++++..++..+.+++..++++|+|.++.+..++++.+++..+-... +...+
T Consensus        24 LR~~itsvgPLL~~Ir~~~gls~s~aGlLTtLPll~fg~~ap~a~~Lar~~g~er~l~~~Llli~~G~~iR~~~-~~~~L  102 (395)
T COG2807          24 LRPAITSVGPLLDEIRQDLGLSFSVAGLLTTLPLLAFGLFAPAAPRLARRFGEERSLFLALLLIAAGILIRSLG-GLPLL  102 (395)
T ss_pred             cchhhhhhhhhHHHHHHHhcccHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHhcc-cHHHH
Confidence            33445566788899999999999999999999999999999999999999999999999999999998877655 56778


Q ss_pred             HHHHHHHHhhcCch-hhHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHHHhccCCCC
Q 030356          118 VTLRGLVGIGLGSG-PVCLSWFLEFIPASNRGMWMVVISIFWTLGTIFEAALAWGNILLNSKN  179 (179)
Q Consensus       118 ~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~~~~~~~~  179 (179)
                      +.+-.+.|.+.+.. ...++.+.+.|| |+.+..+++|....++++.+++.++-.+.++.++|
T Consensus       103 ~~gt~l~G~gIav~nVLLPslIK~~Fp-k~~~~mtglYs~sl~~~aaLaa~lavpla~~~~gW  164 (395)
T COG2807         103 FLGTLLAGAGIAVINVLLPSLIKRDFP-KRVGLMTGLYSTSLGAGAALAAALAVPLAQHSGGW  164 (395)
T ss_pred             HHHHHHHHhhHHHHHHhhhHHHHhhcc-cchhhHHhHHHHHHHHHHHHHhhhhhHHHHhhccH
Confidence            88899999999988 788999999998 67799999999999999999999998888776555

>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter

Probab=99.37  E-value=7.4e-12  Score=96.88  Aligned_cols=129  Identities=17%  Similarity=0.003  Sum_probs=102.0

Q ss_pred             HhhhcchhcccCCCchhHHHHHHHHHHHHHHHHHHHhhhhcc----ccchh-HHHHHHHHHHHHHHHHHHHHH------H
Q 030356           46 SFIGPAIKSEWNLSPAQETLLTSVVFAGLLVGSYSWGFISDN----YGRRK-GLLGIAMLASVAGLLSAFSLN------Y  114 (179)
Q Consensus        46 ~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~d~----~G~r~-~~~~~~~~~~~~~~~~~~~~~------~  114 (179)
                      .+..+++.+++|+++.+.+.+.++..+..++..|+.|+++||    +|||| .++.+....+++.+++...++      .
T Consensus        20 ~~l~~~~~~~~g~s~~~~g~i~~~~~i~~~i~~p~~G~lsDr~~~r~Grrr~~i~~~~~~~~i~~~~~~~~~~~~~~~~~   99 (437)
T TIGR00792        20 TYLLFFYTDVLGLSAAFVGTLFLVARILDAITDPIMGNIVDRTRTRWGKFRPWLLIGAIPFSIVLVLLFTTPDFSATGKL   99 (437)
T ss_pred             HHHHHHHHHccCCCHHHHHHHHHHHHHHHHhccchheEeeecCCCCCCCcchhHHHhHHHHHHHHHHHHhCCCCCcchHH
Confidence            455577778899999999999999999999999999999997    67755 466677777777776665442      3


Q ss_pred             HHHHHHHHHHHhhcCch-hhHHHHHHHhc-cccchhHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 030356          115 LSLVTLRGLVGIGLGSG-PVCLSWFLEFI-PASNRGMWMVVISIFWTLGTIFEAALAWGNIL  174 (179)
Q Consensus       115 ~~~~~~~~l~G~~~g~~-~~~~~~~~~~~-~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~~~  174 (179)
                      ..+++.+++.+++.+.. .+..++..|.. ++++|++..++.+....+|..+++.+.+.+..
T Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~R~~~~~~~~~~~~~g~~l~~~~~~~l~~  161 (437)
T TIGR00792       100 VYAYITYILLGLFYSFVNIPYWSLVPAITLDPRERESLSTFRRFGATLGGLLVAVIVLPLVS  161 (437)
T ss_pred             HHHHHHHHHHHHHHHhhcccHhhCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45566778888888777 67778888876 56899999999998888888877776665553

GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.

>PRK11195 lysophospholipid transporter LplT; Provisional

Probab=99.36  E-value=9.8e-11  Score=89.81  Aligned_cols=123  Identities=16%  Similarity=0.001  Sum_probs=99.7

Q ss_pred             cchhcccCCCchhHHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 030356           50 PAIKSEWNLSPAQETLLTSVVFAGLLVGSYSWGFISDNYGRRKGLLGIAMLASVAGLLSAFSLNYLSLVTLRGLVGIGLG  129 (179)
Q Consensus        50 ~~~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~d~~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~g  129 (179)
                      ++..+.+|.++.+.+++.+...++..++++..+++.||.++|+.+..+.. .++..+...+.++.+...+..++.|++.+
T Consensus       230 ~~~~~~lg~s~~~~G~~~~~~~~g~i~g~~~~~~l~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~~~~~G~~~g  308 (393)
T PRK11195        230 AWAPVALGITLNQPAYLQAVVAIGIAVGAGAAARLVTLETVLRVLPAGIL-MGLVVLLMALQHSLLPAYPLLILIGALGG  308 (393)
T ss_pred             HHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHhcCCcccchHHHHHH-HHHHHHHHHHHhHHHHHHHHHHHHHHhhh
Confidence            34445689999999999999999999999999999999999988877753 34444445566677666777788999888


Q ss_pred             ch-hhHHHHHHHhccccc-hhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 030356          130 SG-PVCLSWFLEFIPASN-RGMWMVVISIFWTLGTIFEAALAWGNI  173 (179)
Q Consensus       130 ~~-~~~~~~~~~~~~~~~-r~~~~~~~~~~~~~g~~~~~~i~~~~~  173 (179)
                      .. ++..+.+.|..|+|. +|++.++.+....++..++..+.+.+.
T Consensus       309 ~~~~~~~~~~q~~~~~~~~~g~~~a~~~~~~~~~~~~~~~~~~~~~  354 (393)
T PRK11195        309 FFVVPMNALLQHRGHVLVGAGHSIAVQNFNENLAMLLMLGLYSLLV  354 (393)
T ss_pred             hhhhhHHHHHHhhCcccccchhHHHHHhHHHHHHHHHHHHHHHHHH
Confidence            87 777778888766654 799999999999999999998888664

>PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function

Probab=99.36  E-value=3.8e-11  Score=89.08  Aligned_cols=124  Identities=24%  Similarity=0.179  Sum_probs=93.3

Q ss_pred             chhcccCCCchhHHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCc
Q 030356           51 AIKSEWNLSPAQETLLTSVVFAGLLVGSYSWGFISDNYGRRKGLLGIAMLASVAGLLSAFSLNYLSLVTLRGLVGIGLGS  130 (179)
Q Consensus        51 ~~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~d~~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~g~  130 (179)
                      .+.+++|.++.|++.+....+....+..++.|.++||+|||+..++-+++.++.++. -..+++..++++|++.|++...
T Consensus        59 ~LY~~yg~~~~qIa~Lf~~Gf~Ss~i~g~~~G~laD~~Grk~~cl~~cily~~scl~-k~~~~~~~L~~GRvlgGiaTSL  137 (354)
T PF05631_consen   59 ALYESYGFSEHQIAILFVAGFASSAIFGTFVGSLADRYGRKKACLLFCILYSLSCLT-KHSSNYPVLLLGRVLGGIATSL  137 (354)
T ss_pred             HHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHH-HhccccHHHHHHHHHHHHHHHH
Confidence            344689999999999999999999999999999999999999999999998888864 4567899999999999999988


Q ss_pred             h-hhHHHHH-HHh----ccccchhHHHHHHH-HHHHHHHHHHHHHHHHHhcc
Q 030356          131 G-PVCLSWF-LEF----IPASNRGMWMVVIS-IFWTLGTIFEAALAWGNILL  175 (179)
Q Consensus       131 ~-~~~~~~~-~~~----~~~~~r~~~~~~~~-~~~~~g~~~~~~i~~~~~~~  175 (179)
                      . .+--++. .|+    +|++..+.-++... ...++-.+.+.+++.++.+.
T Consensus       138 LfS~FEsW~V~Eh~~~g~~~~~L~~tF~~~tf~~n~~vAI~aGv~a~~l~~~  189 (354)
T PF05631_consen  138 LFSAFESWMVHEHNKRGFPQEWLSDTFSLATFFGNGVVAIGAGVVANVLADW  189 (354)
T ss_pred             HHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHH
Confidence            7 6666654 555    33333343333333 23334445555666666554

>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]

Probab=99.36  E-value=5.4e-12  Score=94.85  Aligned_cols=135  Identities=16%  Similarity=0.129  Sum_probs=102.2

Q ss_pred             HHHHhhh-cchhcccCCCchhHHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHHHHHHH-------HHH
Q 030356           43 MILSFIG-PAIKSEWNLSPAQETLLTSVVFAGLLVGSYSWGFISDNYGRRKGLLGIAMLASVAGLLSAFS-------LNY  114 (179)
Q Consensus        43 ~~~~~~~-~~~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~d~~G~r~~~~~~~~~~~~~~~~~~~~-------~~~  114 (179)
                      ...+... -++.++|++++.+++.......+...+.++..|+++||+|.+|++......++++.......       ++.
T Consensus       235 vgfs~~l~~~~~~~fg~~~~~Ag~~a~~f~~~g~l~Rp~GG~LsDR~Gg~rv~~~~f~~~~~~~~~l~~~~~~~~~~~~~  314 (417)
T COG2223         235 VGFSAYLPMYLVTQFGLSPVTAGLIAFLFPLIGALARPLGGWLSDRIGGRRVTLAVFVGMALAAALLSLFLTGFGHGGSF  314 (417)
T ss_pred             HHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHHhccchhhhhccchhHHHHHHHHHHHHHHHHHccccccccCcch
Confidence            3334444 45566799999999999999999999999999999999999999999988888888776654       233


Q ss_pred             HHHHHHHHHHHhhcCch-hhHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHHHhccCCC
Q 030356          115 LSLVTLRGLVGIGLGSG-PVCLSWFLEFIPASNRGMWMVVISIFWTLGTIFEAALAWGNILLNSK  178 (179)
Q Consensus       115 ~~~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~~~~~~~  178 (179)
                      .......+..++..|.. .....++...+| ++-|...++.....++|+..-|..-+...+.+++
T Consensus       315 ~~~~~~~l~l~~~~G~GnGsvfk~Ip~if~-~~~G~v~G~vga~G~lGGf~lp~~~g~~~~~tg~  378 (417)
T COG2223         315 VVFVAVFLALFVFAGLGNGSVFKMIPVIFP-KETGAVTGIVGAIGGLGGFFLPLAFGVSLDLTGS  378 (417)
T ss_pred             HHHHHHHHHHHHHhccCcchheeechHHHH-hhhhHHHHHHHHhccccccchhHHHHHHHHhccc
Confidence            33333334444444443 445556666666 4788899999999999999989998888887663

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=99.35  E-value=2.5e-11  Score=104.12  Aligned_cols=127  Identities=14%  Similarity=-0.009  Sum_probs=104.3

Q ss_pred             hhcch-hcccCCCchhHHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHHHHHHH---------------
Q 030356           48 IGPAI-KSEWNLSPAQETLLTSVVFAGLLVGSYSWGFISDNYGRRKGLLGIAMLASVAGLLSAFS---------------  111 (179)
Q Consensus        48 ~~~~~-~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~d~~G~r~~~~~~~~~~~~~~~~~~~~---------------  111 (179)
                      ..|.+ .+.+|.++.+.+++.+.+.++.++++++.|+++|+.++++.+..+.++.++..+.+.+.               
T Consensus       247 ~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  326 (1140)
T PRK06814        247 QLPLLAKETLGGDENVATLFLAVFSVGVAVGSFLASKLSEGRITLLYVPIGALLMGLFGLDLAFASSSVPAEPAQLKSIL  326 (1140)
T ss_pred             HhHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCceeeeeehHHHHHHHHHHHHHHhcccccccccccccchh
Confidence            34444 45589999999999999999999999999999998887776666655555544433332               


Q ss_pred             -----HHHHHHHHHHHHHHhhcCch-hhHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 030356          112 -----LNYLSLVTLRGLVGIGLGSG-PVCLSWFLEFIPASNRGMWMVVISIFWTLGTIFEAALAWGNIL  174 (179)
Q Consensus       112 -----~~~~~~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~~~  174 (179)
                           ++.+.+.+..++.|++.+.. +...+++.+..|++.||++++++++...+|..+++++.+.+.+
T Consensus       327 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~G~v~g~~~~~~~~~~~ig~~~~g~l~~  395 (1140)
T PRK06814        327 VFLSKRHGWRILIDLFGLAAAGGLYIVPLFAALQAWANPAHRARVIAANNVLNAAFMVAGTIILALLQA  395 (1140)
T ss_pred             hhhcccccHHHHHHHHHHHHHHHHhHHHHHHHHHhhCCcccceeeeHHHHHHHHHHHHHHHHHHHHHHH
Confidence                 55666777888899998887 7889999999999999999999999999999999999988864

>PRK10133 L-fucose transporter; Provisional

Probab=99.35  E-value=3.3e-11  Score=93.67  Aligned_cols=128  Identities=11%  Similarity=0.039  Sum_probs=99.4

Q ss_pred             hhhcchh-cccCCCchhHHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030356           47 FIGPAIK-SEWNLSPAQETLLTSVVFAGLLVGSYSWGFISDNYGRRKGLLGIAMLASVAGLLSAFSLNYLSLVTLRGLVG  125 (179)
Q Consensus        47 ~~~~~~~-~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~d~~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G  125 (179)
                      +..+++. +++|.++.+.++....+.++..+++++.+++.||+|+|+++..+.++.++...+..+.++. .......+.|
T Consensus       280 ~~~~~l~~~~~g~s~~~ag~~~~~~~~~~~vG~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~g  358 (438)
T PRK10133        280 YLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFAGGH-VGLIALTLCS  358 (438)
T ss_pred             HHHHHHhhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHcCCh-HHHHHHHHHH
Confidence            3334443 4589999999999999999999999999999999999999888877766666555554443 2345567889


Q ss_pred             hhcCch-hhHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Q 030356          126 IGLGSG-PVCLSWFLEFIPASNRGMWMVVISIFWTLGTIFEAALAWGNILLNS  177 (179)
Q Consensus       126 ~~~g~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~~~~~~  177 (179)
                      ++.+.. |...+...|.+|+ +.+.+.++... ..+|+.++|.+.+.+.+..|
T Consensus       359 lg~~~i~P~~~s~a~~~~~~-~~~~as~l~~~-~~~g~~~~~~i~G~l~~~~g  409 (438)
T PRK10133        359 AFMSIQYPTIFSLGIKNLGQ-DTKYGSSFIVM-TIIGGGIVTPVMGFVSDAAG  409 (438)
T ss_pred             HHHHHHHHHHHHHHHcccch-hhccchhHHhH-HhccchHHHHHHHHHHHhcc
Confidence            999998 8899999988875 46677777654 44678888888888887654

>PRK15034 nitrate/nitrite transport protein NarU; Provisional

Probab=99.35  E-value=1.1e-10  Score=90.61  Aligned_cols=135  Identities=12%  Similarity=-0.001  Sum_probs=90.1

Q ss_pred             HHHHhhhcchhcccCCCchhHHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHHHHH-HH-----HHHHH
Q 030356           43 MILSFIGPAIKSEWNLSPAQETLLTSVVFAGLLVGSYSWGFISDNYGRRKGLLGIAMLASVAGLLSA-FS-----LNYLS  116 (179)
Q Consensus        43 ~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~d~~G~r~~~~~~~~~~~~~~~~~~-~~-----~~~~~  116 (179)
                      ...+...|++.++ +.+.........+..+...+.+++.|+++||+|+|+++..+.....+...... ..     .+...
T Consensus       269 vg~s~~lp~~~~~-~~~~~~~l~~~~l~~l~~~l~rplgG~LADRiG~~~vl~~~~i~~~i~~~~~~l~lp~~~~~~~~~  347 (462)
T PRK15034        269 IGFSAGFAMLAKT-QFPDVNILRLAFFGPFIGAIARSVGGAISDKFGGVRVTLINFIFMAIFSALLFLTLPGTGSGNFIA  347 (462)
T ss_pred             HHHHHHHHHHHHH-HcChHHHHHHHHHHHHHHHHHHHhhHHHHHhcCchHHHHHHHHHHHHHHHHHHHHhccccccHHHH
Confidence            3334444555444 22333333334456778889999999999999999999988877666654322 22     23455


Q ss_pred             HHHHHHHHHhhcCch-hhHHHHHHHhccc---------------------cchhHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 030356          117 LVTLRGLVGIGLGSG-PVCLSWFLEFIPA---------------------SNRGMWMVVISIFWTLGTIFEAALAWGNIL  174 (179)
Q Consensus       117 ~~~~~~l~G~~~g~~-~~~~~~~~~~~~~---------------------~~r~~~~~~~~~~~~~g~~~~~~i~~~~~~  174 (179)
                      +.+..+...++.|.. .....++.+.+|+                     ++-|...|+......+|+.+-|.+-+...+
T Consensus       348 ~~~~~~~l~~~~G~gngsvfk~ip~~f~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~G~v~a~G~~Ggf~~p~~~g~~~~  427 (462)
T PRK15034        348 FYAVFMGLFLTAGLGSGSTFQMIAVIFRQITIYRVKMKGGSDEQAQREAVTETAAALGFISAIGAVGGFFIPQAFGMSLN  427 (462)
T ss_pred             HHHHHHHHHHHhcccchHHHHhhHHHHhhhhhhcccccccchhHHhhHHHHHHHHHHHHHHHHHHcccchhhHHHHHHHH
Confidence            555544544555555 5666677777774                     156788899999999999999988887777


Q ss_pred             cCCC
Q 030356          175 LNSK  178 (179)
Q Consensus       175 ~~~~  178 (179)
                      .+|+
T Consensus       428 ~~g~  431 (462)
T PRK15034        428 MTGS  431 (462)
T ss_pred             HcCC
Confidence            6554

>TIGR00898 2A0119 cation transport protein

Probab=99.34  E-value=3.3e-11  Score=95.04  Aligned_cols=117  Identities=21%  Similarity=0.126  Sum_probs=89.6

Q ss_pred             chhcccCCCchhHHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHhhc
Q 030356           51 AIKSEWNLSPAQETLLTSVVFAGLLVGSYSWGFISDNYGRRKGLLGIAMLASVAGLLSAFSLNY--LSLVTLRGLVGIGL  128 (179)
Q Consensus        51 ~~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~d~~G~r~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~G~~~  128 (179)
                      ...++++.+..   .......+....+.++.+++.||+|||+.+..+.++.+++.+...+.++.  ....+..++.+++.
T Consensus       348 ~~~~~~~~~~~---~~~~~~~~~~i~~~~~~~~l~dr~grr~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  424 (505)
T TIGR00898       348 LDLGNLGGNIY---LDLFISGLVELPAKLITLLLIDRLGRRYTMAASLLLAGVALLLLLFVPVDLYFLRTALAVLGKFGI  424 (505)
T ss_pred             ccccccCCChH---HHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHH
Confidence            33444444432   33345567777889999999999999999999988888887777665533  33444455566666


Q ss_pred             Cch-hhHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHH
Q 030356          129 GSG-PVCLSWFLEFIPASNRGMWMVVISIFWTLGTIFEAALAW  170 (179)
Q Consensus       129 g~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~  170 (179)
                      +.. +..+.+..|.+|++.|++++++.+....+|+.++|.+.+
T Consensus       425 ~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~ig~~i~p~i~~  467 (505)
T TIGR00898       425 TSAFQMVYLYTAELYPTVVRNLGVGVCSTMARVGSIISPFLVY  467 (505)
T ss_pred             HHHHHHHHHHhcccccHHHHhhhHhHHHHHHHHHHHHHhHHHH
Confidence            665 777888999999999999999999999999999999987

>PRK10429 melibiose:sodium symporter; Provisional

Probab=99.34  E-value=9.1e-11  Score=92.04  Aligned_cols=137  Identities=14%  Similarity=-0.020  Sum_probs=102.1

Q ss_pred             HHHHHHhhhcchhcccCCCchhHHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHHHHHH-----HHHHH
Q 030356           41 EIMILSFIGPAIKSEWNLSPAQETLLTSVVFAGLLVGSYSWGFISDNYGRRKGLLGIAMLASVAGLLSAF-----SLNYL  115 (179)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~d~~G~r~~~~~~~~~~~~~~~~~~~-----~~~~~  115 (179)
                      .........+++.+...-+++..+.+.+...++.+++.+++++++||+|+|+.+..+..+.+++.+....     .++.+
T Consensus       246 ~~~~~~~~~~y~~~y~~~~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  325 (473)
T PRK10429        246 ASNIINGFAIYYFTYVIGDADLFPYYLSYAGAANLVTLILFPRLVKSLSRRILWAGASIFPVLSCGVLLLMGLAAPHNAL  325 (473)
T ss_pred             HHHHHhhheeeEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHhccCchhHH
Confidence            3344444455666554335666777777778899999999999999999999998887766655544332     23455


Q ss_pred             HHHHHHHHHHhhcCch-hhHHHHHHHhcc-------ccchhHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Q 030356          116 SLVTLRGLVGIGLGSG-PVCLSWFLEFIP-------ASNRGMWMVVISIFWTLGTIFEAALAWGNILLNS  177 (179)
Q Consensus       116 ~~~~~~~l~G~~~g~~-~~~~~~~~~~~~-------~~~r~~~~~~~~~~~~~g~~~~~~i~~~~~~~~~  177 (179)
                      .+++..++.|++.+.. ....+++.|..+       +++.|..++.......+|..+++.+.+++.+..|
T Consensus       326 ~~~i~~~l~g~~~~~~~~~~~am~ad~id~~e~~tG~R~~G~~~s~~~~~~K~~~al~~~i~g~~l~~~G  395 (473)
T PRK10429        326 LIVIAGILLNIGTALFWVLQVIMVADTVDYGEYKLGIRCESIAYSVQTMVVKGGSAFAAFFIGVVLGLIG  395 (473)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            6666778888888887 777888888855       3334668899999999999999999999887543

>PRK11102 bicyclomycin/multidrug efflux system; Provisional

Probab=99.33  E-value=1.8e-10  Score=87.52  Aligned_cols=120  Identities=14%  Similarity=0.035  Sum_probs=82.4

Q ss_pred             cchhcccCCCchhHHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHHHHH---HH-HHHHHHHHHHHHHH
Q 030356           50 PAIKSEWNLSPAQETLLTSVVFAGLLVGSYSWGFISDNYGRRKGLLGIAMLASVAGLLSA---FS-LNYLSLVTLRGLVG  125 (179)
Q Consensus        50 ~~~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~d~~G~r~~~~~~~~~~~~~~~~~~---~~-~~~~~~~~~~~l~G  125 (179)
                      +.+.+++|.++.+.+++.+...++..+++++.|++.||+|||+.+..+.....+..+...   .. .+.+...+...+.+
T Consensus       219 ~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  298 (377)
T PRK11102        219 FVYIELNGVSPQNFGYYFALNIVFLFVMTIINSRFVRRVGALNMLRFGLWIQFIMGIWLVVSALLDLGFWALVVGVAAFV  298 (377)
T ss_pred             HHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence            345566899999999999999999999999999999999999998888765444332221   11 23333333333334


Q ss_pred             hhcCch-hhHHHHHHHhccccchhHHHHHHHH-HHHHHHHHHHHHHH
Q 030356          126 IGLGSG-PVCLSWFLEFIPASNRGMWMVVISI-FWTLGTIFEAALAW  170 (179)
Q Consensus       126 ~~~g~~-~~~~~~~~~~~~~~~r~~~~~~~~~-~~~~g~~~~~~i~~  170 (179)
                      .+.+.. ......+.|..| ++|+++.++.+. ...+|..++++++.
T Consensus       299 ~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~g~~~g~~~~~  344 (377)
T PRK11102        299 GCVSMISSNAMAVILDEFP-HMAGTASSLAGTLRFGIGAIVGALLSL  344 (377)
T ss_pred             HHHHHhhHHHHHHHhcccc-ccchHHHHHHHHHHHHHHHHHHHHHHh
Confidence            334333 445556677766 889999999654 45567777776654

>PRK09669 putative symporter YagG; Provisional

Probab=99.32  E-value=1.1e-10  Score=90.90  Aligned_cols=130  Identities=15%  Similarity=0.052  Sum_probs=95.3

Q ss_pred             hhcchhcccCCCchhHHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHH
Q 030356           48 IGPAIKSEWNLSPAQETLLTSVVFAGLLVGSYSWGFISDNYGRRKGLLGIAMLASVAGLLSAF--SLNYLSLVTLRGLVG  125 (179)
Q Consensus        48 ~~~~~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~d~~G~r~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~G  125 (179)
                      ..+++.++.--+++..+.+.....+...++.+++++++||+|+|+.+..+.+..++..+...+  .++.+.+++..++.|
T Consensus       251 ~~~y~~~~~~~~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g  330 (444)
T PRK09669        251 ATLYYVNYVLLRPDLATLFLVTGMIAGLFGALLSERLLGKFDRVRAFKWTIVAFVILSALIFFIPPSNVWLIFALNILFN  330 (444)
T ss_pred             hhheeeeeecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHH
Confidence            334444443223344455666677888899999999999999999998887665544332222  346666777788999


Q ss_pred             hhcCch-hhHHHHHHHhccc-------cchhHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Q 030356          126 IGLGSG-PVCLSWFLEFIPA-------SNRGMWMVVISIFWTLGTIFEAALAWGNILLNS  177 (179)
Q Consensus       126 ~~~g~~-~~~~~~~~~~~~~-------~~r~~~~~~~~~~~~~g~~~~~~i~~~~~~~~~  177 (179)
                      ++.+.. +...++++|..+.       +..|...+.++....+|..+++.+++.+.+..|
T Consensus       331 ~~~~~~~~~~~am~ad~~d~~e~~~G~r~~g~~~s~~~~~~klg~alg~~i~g~ll~~~G  390 (444)
T PRK09669        331 FIQNLTTPLQWSMFSDVVDYEEKRSGRRLDGLVFSTNLFAIKLGLAIGGAVVGWILAWVD  390 (444)
T ss_pred             HHHHHHHHHHHHHHHhhhhhhhhhcCcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            999988 8888899888752       334677889999999999999999999887543

>PRK10473 multidrug efflux system protein MdtL; Provisional

Probab=99.31  E-value=1.9e-10  Score=87.95  Aligned_cols=119  Identities=16%  Similarity=0.114  Sum_probs=79.5

Q ss_pred             chhcccCCCchhHHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCc
Q 030356           51 AIKSEWNLSPAQETLLTSVVFAGLLVGSYSWGFISDNYGRRKGLLGIAMLASVAGLLSAFSLNYLSLVTLRGLVGIGLGS  130 (179)
Q Consensus        51 ~~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~d~~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~g~  130 (179)
                      .+.+++|.++.+.+.+.+...++..++.++.+++.||+|||+.+..+..+..++.+...+.++.........+.+.+.+.
T Consensus       229 ~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~  308 (392)
T PRK10473        229 LLMEQMGFSRGEYAIIMALTAGVSMTVSFSTPFALGIFKPRTLMLTSQVLFLAAGITLALSPSHAVSLFGITLICAGFSV  308 (392)
T ss_pred             HHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34466899999999999999999999999999999999999999999888888777776665544434444444444333


Q ss_pred             hhhHHHHHHHhccccch-hHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 030356          131 GPVCLSWFLEFIPASNR-GMWMVVISIFWTLGTIFEAALAWGNIL  174 (179)
Q Consensus       131 ~~~~~~~~~~~~~~~~r-~~~~~~~~~~~~~g~~~~~~i~~~~~~  174 (179)
                      . .......+..|.++| +.+.+++    .++..+++.+++++.+
T Consensus       309 ~-~~~~~~~~~~~~~~~~g~~~~~~----~~~~~~g~~~~~~l~~  348 (392)
T PRK10473        309 G-FGVAMSQALGPFSLRAGVASSTL----GIAQVCGSSLWIWLAA  348 (392)
T ss_pred             H-hHHHHHHHhccCcccccHHHHHH----HHHHHHHHHHHHHHHH
Confidence            2 112233455565555 4444444    4455555555555544

>PRK11043 putative transporter; Provisional

Probab=99.31  E-value=1.8e-10  Score=88.37  Aligned_cols=128  Identities=17%  Similarity=0.132  Sum_probs=95.1

Q ss_pred             hhhcchhcccCCCchhHHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHHHH---HH--HHHHHHHHHHH
Q 030356           47 FIGPAIKSEWNLSPAQETLLTSVVFAGLLVGSYSWGFISDNYGRRKGLLGIAMLASVAGLLS---AF--SLNYLSLVTLR  121 (179)
Q Consensus        47 ~~~~~~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~d~~G~r~~~~~~~~~~~~~~~~~---~~--~~~~~~~~~~~  121 (179)
                      ...|.+.+++|.++.+.++......++..++.+..+++.||+|+|+.+.......++..+..   ..  .++...+.+..
T Consensus       224 ~~~p~~~~~~g~s~~~~g~~~~~~~~~~~~g~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  303 (401)
T PRK11043        224 TGSPFILEQMGYSPADIGLSYVPQTIAFLVGGYGCRAALQKWGGEQLLPWLLVLFAVSVIAIWLASLLSHPSLVPLLIPF  303 (401)
T ss_pred             HHhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHH
Confidence            34466677789999999998888889999999999999999999987665554444443322   11  23444455556


Q ss_pred             HHHHhhcCch-hhHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 030356          122 GLVGIGLGSG-PVCLSWFLEFIPASNRGMWMVVISIFWTLGTIFEAALAWGNILL  175 (179)
Q Consensus       122 ~l~G~~~g~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~~~~  175 (179)
                      .+.|++.+.. +.......|..| ++|+++.++++.....+...++.+.+.+.+.
T Consensus       304 ~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~~~~~~~~~~g~l~~~  357 (401)
T PRK11043        304 CVMAAANGAIYPIVVAQALRPFP-QATGKAAALQNTLQLGLCFLASLLVSALIST  357 (401)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhCc-ccChHHHHHHHHHHHHHHHHHHHHHHHccCC
Confidence            6777777776 666666667765 6899999999988888888888888887653

>TIGR00903 2A0129 major facilitator 4 family protein

Probab=99.31  E-value=1.5e-10  Score=88.01  Aligned_cols=135  Identities=20%  Similarity=0.130  Sum_probs=86.8

Q ss_pred             HHHHHHHHHHHHhhhcchhcccCCCchhHHHHHHHHHHHHHHHHHHHhhhhccccch---hHHHH-HHHHHHHHHHHHHH
Q 030356           35 LVAEAMEIMILSFIGPAIKSEWNLSPAQETLLTSVVFAGLLVGSYSWGFISDNYGRR---KGLLG-IAMLASVAGLLSAF  110 (179)
Q Consensus        35 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~d~~G~r---~~~~~-~~~~~~~~~~~~~~  110 (179)
                      .++.....+......|.+.++.|.+.+ .+...++..+...++   .++++||..||   +.... ..+..++......+
T Consensus       201 ~~~~~~~~~~~~~wlp~~L~~~g~s~~-~~~~~~l~~~~g~~g---~~~~~d~~~r~~~r~~~~~~~~~~~a~~~~~~~~  276 (368)
T TIGR00903       201 LGFGVALFDNLAIWLEAALRPAGLEDI-AGDAVALAILAGLIG---VAVIPDRVARAGLRSIYIRAAALLIAAFFLALAF  276 (368)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHCCCChH-HHHHHHHHHHHHHHH---HHHhhHHhhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence            344444444444556666677777754 566665555555555   46777776543   33332 33333443334444


Q ss_pred             HHHHHHHHHHHHHHHhhcCch-hhHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 030356          111 SLNYLSLVTLRGLVGIGLGSG-PVCLSWFLEFIPASNRGMWMVVISIFWTLGTIFEAALAWGNI  173 (179)
Q Consensus       111 ~~~~~~~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~~  173 (179)
                      ..+.....+...+.+++.... +...++.+|.+|++.|+++.++.+....+|+..+|.+.+.+.
T Consensus       277 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~rgt~~G~~~~~g~~~~~~~~~~~~~~~  340 (368)
T TIGR00903       277 ELNRLALFAFIGIAGLLMLPAYAIIMDWIGKFCDKELHGKAAGAIGFTSRAISVALALAAMLFI  340 (368)
T ss_pred             ccccHHHHHHHHHHHHhhhhhHHHHHHHHHHhcchhhcCcccchhhHHHHHHHHHHHHHHHHHh
Confidence            433333344455566666665 667789999999999999999999999999999998888766

This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.

>TIGR00712 glpT glycerol-3-phosphate transporter

Probab=99.31  E-value=1.3e-10  Score=90.34  Aligned_cols=131  Identities=13%  Similarity=0.028  Sum_probs=86.9

Q ss_pred             hhhcchh-cccCCCchhHHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHH---HHHHHHHHH--HHHHHHHHH
Q 030356           47 FIGPAIK-SEWNLSPAQETLLTSVVFAGLLVGSYSWGFISDNYGRRKGLLGIAMLAS---VAGLLSAFS--LNYLSLVTL  120 (179)
Q Consensus        47 ~~~~~~~-~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~d~~G~r~~~~~~~~~~~---~~~~~~~~~--~~~~~~~~~  120 (179)
                      ...|.+. ++.|.++.+.++......++..+++++.|+++||+++++....+.....   ++.......  .+.......
T Consensus       272 ~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  351 (438)
T TIGR00712       272 DWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFKGNRGATGVFFMTLVTIAVIVYWMNPAGNPLVDMIC  351 (438)
T ss_pred             HhHHHHHHHccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCcccHHHHHHHHHHHHHHHHHHhcCCCchHHHHHH
Confidence            3445554 4578999999999999999999999999999999975432222322211   111111111  122333334


Q ss_pred             HHHHHhhcCch-hhHHHHHHHhccccchhHHHHHHHHHHHHHH-HHHHHHHHHHhccCC
Q 030356          121 RGLVGIGLGSG-PVCLSWFLEFIPASNRGMWMVVISIFWTLGT-IFEAALAWGNILLNS  177 (179)
Q Consensus       121 ~~l~G~~~g~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~-~~~~~i~~~~~~~~~  177 (179)
                      .++.|.+.... ........|.+|+++|+++.++.+....+|+ .++|.+.+.+.+..+
T Consensus       352 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~gg~~~gp~l~G~l~~~~g  410 (438)
T TIGR00712       352 MIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFG  410 (438)
T ss_pred             HHHHHHHHccHHHHHHHHHHHhcChhheeeehhhhchHHHhhhhhhcchhHHHHHHhcc
Confidence            45555543333 3334567899999999999999988877764 689999999988654

This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.

>PRK11902 ampG muropeptide transporter; Reviewed

Probab=99.28  E-value=3.1e-10  Score=87.18  Aligned_cols=125  Identities=14%  Similarity=0.162  Sum_probs=82.8

Q ss_pred             hcchhcccCCCchhHHHHHHHHH-HHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHHHH---HHH-HHHHHHHHHHHH
Q 030356           49 GPAIKSEWNLSPAQETLLTSVVF-AGLLVGSYSWGFISDNYGRRKGLLGIAMLASVAGLLS---AFS-LNYLSLVTLRGL  123 (179)
Q Consensus        49 ~~~~~~~~~~s~~~~~~~~~~~~-~~~~i~~~~~g~l~d~~G~r~~~~~~~~~~~~~~~~~---~~~-~~~~~~~~~~~l  123 (179)
                      .+.+.+++|.++++.+++..... .+..++.++.|++.||+|+|+.+..+.....+..+..   +.. ++.+.+.+..++
T Consensus       233 ~~~l~~~~G~~~~~~g~~~~~~~~~~~i~g~~~~g~l~~r~g~~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~  312 (402)
T PRK11902        233 TTFLIRGAGFSAGEVGIVNKTLGLAATIVGALAGGTLMVRLGLYRSLMLFGVLQAVSNLGYWVLAVTPKHLWTMALAIGI  312 (402)
T ss_pred             HHHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHH
Confidence            35566778999999999886654 5688999999999999999998877766655554332   333 344444444433


Q ss_pred             ----HHhhcCch-hhHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Q 030356          124 ----VGIGLGSG-PVCLSWFLEFIPASNRGMWMVVISIFWTLGTIFEAALAWGNILLNS  177 (179)
Q Consensus       124 ----~G~~~g~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~~~~~~  177 (179)
                          .|++.+.. .....++.+.+|.+    ..++++...+++..+++.+++.+.+..|
T Consensus       313 ~~~~~g~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~~~G~l~~~~G  367 (402)
T PRK11902        313 ENLCGGMGTAAFVALLMALCNRSFSAT----QYALLSALASVGRVYVGPTSGYLVEAYG  367 (402)
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCCCcHH----HHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence                34444444 44445555555544    4555666667777766778888887665

>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=99.27  E-value=4.8e-10  Score=87.15  Aligned_cols=151  Identities=21%  Similarity=0.123  Sum_probs=107.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhcchhcccCCCchhHHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHH
Q 030356           23 FQILVLIYAGLGLVAEAMEIMILSFIGPAIKSEWNLSPAQETLLTSVVFAGLLVGSYSWGFISDNYGRRKGLLGIAMLAS  102 (179)
Q Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~d~~G~r~~~~~~~~~~~  102 (179)
                      .++.....+.+...-+.-....+.++...+.++.|++..++.+.+........+..+...++.||+|||+.++.+..+..
T Consensus       267 lR~~~~i~~~v~~~qq~sGi~ai~~Yst~i~~~aG~~~~~a~~an~~~g~v~~~~t~~~~~lid~~gRRpLll~~~~~~~  346 (485)
T KOG0569|consen  267 LRRPLLIGIVVSFAQQFSGINAIFFYSTSIFKTAGFTPEEAQYANLGIGIVNLLSTLVSPFLIDRLGRRPLLLISLSLMA  346 (485)
T ss_pred             hhHHHHHHHHHHHHHHhcCcceeHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHH
Confidence            33443444444444444444556666778888899999999999999999999999999999999999999999998888


Q ss_pred             HHHHHHHHH---HHHH------HHHHHHHHHHh--hcCchhhHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHH
Q 030356          103 VAGLLSAFS---LNYL------SLVTLRGLVGI--GLGSGPVCLSWFLEFIPASNRGMWMVVISIFWTLGTIFEAALAWG  171 (179)
Q Consensus       103 ~~~~~~~~~---~~~~------~~~~~~~l~G~--~~g~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~  171 (179)
                      +..+++...   .+..      ..++..++..+  +.|..|..+-+.+|.+|++.|..++++-.....+..++-...--.
T Consensus       347 ~~~~~~~~~~~l~~~~~~~~~y~~i~~~~~~~~~f~~G~gpi~~fi~aELf~~~~R~aa~s~~~~~~w~~~fiv~~~fp~  426 (485)
T KOG0569|consen  347 VALLLMSIALFLSNSFGSWLSYLCIAAIFLFIISFAIGPGPIPWFIGAELFPQSARSAAQSVATAVNWLSNFIVGFAFPP  426 (485)
T ss_pred             HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhcCCCchhHHHHHHhCCccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            887766532   1111      11233333333  444347778888999999999999999877777776665444443


Q ss_pred             Hh
Q 030356          172 NI  173 (179)
Q Consensus       172 ~~  173 (179)
                      +.
T Consensus       427 l~  428 (485)
T KOG0569|consen  427 LQ  428 (485)
T ss_pred             HH
Confidence            33

>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []

Probab=99.27  E-value=2.5e-10  Score=87.11  Aligned_cols=123  Identities=12%  Similarity=0.010  Sum_probs=108.0

Q ss_pred             ccCCCchhHHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCch-hh
Q 030356           55 EWNLSPAQETLLTSVVFAGLLVGSYSWGFISDNYGRRKGLLGIAMLASVAGLLSAFSLNYLSLVTLRGLVGIGLGSG-PV  133 (179)
Q Consensus        55 ~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~d~~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~-~~  133 (179)
                      +-+.+....|.+.++..+..++...+..++.+|+|.|+.++++..++++=...++++++.+.+.+.+.+.|+-.+.. ..
T Consensus       253 ~~~~g~~~~G~l~s~~v~~E~~~m~~~p~li~rig~k~~Lllag~i~~iRi~~~~~~~~~~~i~~~klLH~~e~~l~lva  332 (412)
T PF01306_consen  253 SAGQGNQMYGYLWSVQVFLEALMMFFSPWLINRIGAKNLLLLAGVIMAIRIIGSGFATNPWVISLIKLLHALEFPLLLVA  332 (412)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHT--SHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccccChhHHhHHHHHHHHHHHHHHHHHHHHHHhcChHhHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHH
Confidence            33445566899999999999999999999999999999999999999999999999999999999999999999988 88


Q ss_pred             HHHHHHHhccccchhHHHHH-HHHHHHHHHHHHHHHHHHHhccCC
Q 030356          134 CLSWFLEFIPASNRGMWMVV-ISIFWTLGTIFEAALAWGNILLNS  177 (179)
Q Consensus       134 ~~~~~~~~~~~~~r~~~~~~-~~~~~~~g~~~~~~i~~~~~~~~~  177 (179)
                      ..-++++.+|+|..++...+ ++.+.++|..+.+.++|.+-|+.|
T Consensus       333 ~fkYI~~~fd~rlsAt~y~v~~~~~~~~~~~i~s~~~G~lyd~~G  377 (412)
T PF01306_consen  333 AFKYITAHFDKRLSATLYLVGFQFAKQIGIIILSPLAGYLYDRIG  377 (412)
T ss_dssp             HHHHHHHHS-GGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHhhhHHhhHhhcC
Confidence            89999999999999999988 689999999999999999887643

The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.

>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator)

Probab=99.27  E-value=4.4e-11  Score=90.40  Aligned_cols=111  Identities=16%  Similarity=0.088  Sum_probs=81.7

Q ss_pred             cchhcccCCCchhHHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHHHHHH--HH--HHHHHHHHHHHHH
Q 030356           50 PAIKSEWNLSPAQETLLTSVVFAGLLVGSYSWGFISDNYGRRKGLLGIAMLASVAGLLSAF--SL--NYLSLVTLRGLVG  125 (179)
Q Consensus        50 ~~~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~d~~G~r~~~~~~~~~~~~~~~~~~~--~~--~~~~~~~~~~l~G  125 (179)
                      .++.+++|.++.+.+.+.++..+...+++++.|+++||+|+|+.+..+......+..+..+  .+  +.....+...+.+
T Consensus       250 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  329 (366)
T TIGR00886       250 MFFKDQFGLSKVTAGAYASLGGLLGSLARPLGGAISDRLGGARKLLMSFLGVAMGAFLVVLGLVSPLSLAVFIVLFVALF  329 (366)
T ss_pred             HHHHHHcCCcHHHHHHHHHHHHHHHHHHhhccchHHHhhccchhHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHH
Confidence            4444568999999999999999999999999999999999998887776665555544433  22  4444444445555


Q ss_pred             hhcCch-hhHHHHHHHhccccchhHHHHHHHHHHHHH
Q 030356          126 IGLGSG-PVCLSWFLEFIPASNRGMWMVVISIFWTLG  161 (179)
Q Consensus       126 ~~~g~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g  161 (179)
                      ++.|.. ....+.+.+..| +++|+..|+.+....+|
T Consensus       330 ~~~g~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~g  365 (366)
T TIGR00886       330 FFSGAGNGSTFALVPHIFR-RATGAVSGLVGAIGNLG  365 (366)
T ss_pred             HHhccccchhhhcchhhch-hhcccHHHHHHHhccCC
Confidence            555555 556677778776 69999999988776654

>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]

Probab=99.25  E-value=4.7e-10  Score=83.22  Aligned_cols=150  Identities=17%  Similarity=0.032  Sum_probs=117.7

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhcchhcccCCCchhHHHHHHHHHHHHHHHHHHHhhhhcc-ccchhHHHHHHHHHHHHHHH
Q 030356           29 IYAGLGLVAEAMEIMILSFIGPAIKSEWNLSPAQETLLTSVVFAGLLVGSYSWGFISDN-YGRRKGLLGIAMLASVAGLL  107 (179)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~d~-~G~r~~~~~~~~~~~~~~~~  107 (179)
                      .-+.+.+-.+...++.....+|.+..|.|+|+.+.|++.+...+.....++....+.+| ..+|+..+...+.+.++.+.
T Consensus       211 W~vtLfmGlqS~~~Y~~~~WLP~ili~~G~sa~~aG~llsl~~l~~~~~~ll~P~la~R~~n~r~~~~~~~~~~l~G~~G  290 (395)
T COG2807         211 WQVTLFMGLQSLLYYIVIGWLPAILIDRGLSAAEAGSLLSLMQLAQLPTALLIPLLARRSKNQRPLVVLALLLMLVGLVG  290 (395)
T ss_pred             HHHHHHHHhhHHHHHHHHHHHHHHHHHcCCCHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHH
Confidence            33344455667777777778899999999999999999999999999999999999996 55666677777777777777


Q ss_pred             HHHHHHHHHHHHHHHHHHhhcCch-hhHHHHHHHhcccc-chhHHHHHHHHHHHHHHHHHHHHHHHHhccCCCC
Q 030356          108 SAFSLNYLSLVTLRGLVGIGLGSG-PVCLSWFLEFIPAS-NRGMWMVVISIFWTLGTIFEAALAWGNILLNSKN  179 (179)
Q Consensus       108 ~~~~~~~~~~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~-~r~~~~~~~~~~~~~g~~~~~~i~~~~~~~~~~~  179 (179)
                      +.+.+.-..+. ..++.|++.|.. +.....+.+..++. +-++-.++.+....+=..++|.+.|++-|.+|+|
T Consensus       291 ~~~~P~~~~~l-w~~llG~G~G~~F~laL~li~~rs~~a~~Aa~LSgmaQg~GYllAa~GP~l~G~lhDa~gsw  363 (395)
T COG2807         291 LLLAPGQLPIL-WALLLGLGQGGAFPLALTLILLRSSDAAIAAALSGMAQGVGYLLAAFGPWLFGFLHDATGSW  363 (395)
T ss_pred             HHHhhhhHHHH-HHHHHhCccchHHHHHHHHHHhhcCChHHHHHHHHHhhhhhHHHHhhhhhhHhHHHHhcCCh
Confidence            77766432222 258999999998 88888888776654 4466666677777777788999999999999987

>KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=99.25  E-value=1.1e-10  Score=84.32  Aligned_cols=127  Identities=20%  Similarity=0.128  Sum_probs=102.7

Q ss_pred             cchhcccCCCchhHHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhhc
Q 030356           50 PAIKSEWNLSPAQETLLTSVVFAGLLVGSYSWGFISDNYGRRKGLLGIAMLASVA-GLLSAFSLNYLSLVTLRGLVGIGL  128 (179)
Q Consensus        50 ~~~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~d~~G~r~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~G~~~  128 (179)
                      -.+.+.+|+|+.+++.+.+....-.++.+++.|.++||+|++...+.+..+..+. -....+  +...=+....+.|+.+
T Consensus       289 ~fF~~rfGlS~~~a~~i~s~vy~Isav~spvfg~i~Dk~G~n~~wv~~a~~~tl~~H~~l~F--t~lsPy~~m~~lGLsy  366 (459)
T KOG4686|consen  289 MFFQKRFGLSAVSAGNILSTVYGISAVLSPVFGAISDKYGFNLWWVASACILTLLGHSGLFF--TFLSPYTSMTFLGLSY  366 (459)
T ss_pred             HHHHHhhCCChhhccchhhhhhhhhhhhhhhHHHhHhhhcceehhHHHHHHHHHHHhhhHHh--hhccHHHHHHHHhhhH
Confidence            4456779999999999999999999999999999999999998877765544333 222222  1222245667788888


Q ss_pred             Cch-hhHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHHHhccCCC
Q 030356          129 GSG-PVCLSWFLEFIPASNRGMWMVVISIFWTLGTIFEAALAWGNILLNSK  178 (179)
Q Consensus       129 g~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~~~~~~~  178 (179)
                      ... -..++.++...|+++.|++.+..+...++|-.+.|++++.+.+..|+
T Consensus       367 sllAcslWP~va~~vpE~qLGTaygf~qsIqNLgla~i~Iiag~i~d~~g~  417 (459)
T KOG4686|consen  367 SLLACSLWPCVASLVPEEQLGTAYGFIQSIQNLGLAFIPIIAGFIADGDGS  417 (459)
T ss_pred             HHHHHHHhhhhhhhCCHHHhcchHHHHHHHHhhhhhHHhhhhheeecCCCc
Confidence            877 55788999999999999999999999999999999999999988763

>PRK11652 emrD multidrug resistance protein D; Provisional

Probab=99.22  E-value=1.4e-09  Score=83.26  Aligned_cols=124  Identities=16%  Similarity=0.118  Sum_probs=90.7

Q ss_pred             chhcccCCCchhHHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHH-HHHHHHHH--HHHHHHHHHHHHHHHhh
Q 030356           51 AIKSEWNLSPAQETLLTSVVFAGLLVGSYSWGFISDNYGRRKGLLGIAMLAS-VAGLLSAF--SLNYLSLVTLRGLVGIG  127 (179)
Q Consensus        51 ~~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~d~~G~r~~~~~~~~~~~-~~~~~~~~--~~~~~~~~~~~~l~G~~  127 (179)
                      .+.+.+|.++.+.+++.....++..++.++.+++.||++++........... +.......  ..+.+.+....++.|++
T Consensus       233 ~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  312 (394)
T PRK11652        233 LMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFSTLMWQSVICCLLAGLLMWIPGWFGVMNVWTLLVPAALFFFG  312 (394)
T ss_pred             HHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence            3344489999999999999999999999999999999984333322222211 11111111  12445566677888888


Q ss_pred             cCch-hhHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 030356          128 LGSG-PVCLSWFLEFIPASNRGMWMVVISIFWTLGTIFEAALAWGNILL  175 (179)
Q Consensus       128 ~g~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~~~~  175 (179)
                      .+.. +...++..|.+| ++++...++.+....+|..+++.+++.+.+.
T Consensus       313 ~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~lg~~~~~~~~~~~~~~  360 (394)
T PRK11652        313 AGMLFPLATSGAMEPFP-YLAGTAGALLGGLQNIGSGLAALLSAMLPQT  360 (394)
T ss_pred             HHHHHHHHHHHHHhhcc-ccchHHHHHHHHHHHHHHHHHHHHHHHccCC
Confidence            8887 888888888887 6789999999999999999999998877543

>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family

Probab=99.21  E-value=1.4e-09  Score=83.26  Aligned_cols=150  Identities=13%  Similarity=-0.091  Sum_probs=108.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhcchhcccCCCchhHHHH--HHHHHHHHHHHHHHHhh-hhccccchhHHHHHHHHH-HH
Q 030356           28 LIYAGLGLVAEAMEIMILSFIGPAIKSEWNLSPAQETLL--TSVVFAGLLVGSYSWGF-ISDNYGRRKGLLGIAMLA-SV  103 (179)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~--~~~~~~~~~i~~~~~g~-l~d~~G~r~~~~~~~~~~-~~  103 (179)
                      .+.+...++.++.......+..|.+.+|.|.|.++.|.+  .+...+...+.+|+++. ..||+||||..++...+. .+
T Consensus         3 ~~~~~~ly~~~g~~~~~~~p~lp~~l~~~g~~~~~iGl~~~~~l~~~~~~l~~p~~~~~~~~~~g~r~~~i~~~~~~~~~   82 (390)
T TIGR02718         3 VITLGLLYLSQGIPIGLAMDALPTLLREDGAPLTALAFLPLVGLPWVVKFLWAPLVDNWWSWRLGRRRSWVLPMQCLVSA   82 (390)
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCcchhHHHHHHHHHHH
Confidence            345555678888888888899999999999999999997  46678888889999855 799999999875554332 21


Q ss_pred             HHHHHH---HHHH-HHHHHHHHHHHHhhcCch-hhHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Q 030356          104 AGLLSA---FSLN-YLSLVTLRGLVGIGLGSG-PVCLSWFLEFIPASNRGMWMVVISIFWTLGTIFEAALAWGNILLNS  177 (179)
Q Consensus       104 ~~~~~~---~~~~-~~~~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~~~~~~  177 (179)
                      ......   ...+ ...++...++..+..+.. +..-.+..|..++++++...+....+..+|..+++...+++.+..+
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~d~~~d~~~~~~~~~~~~~~~~~~~~~g~~lG~~~g~~~~~~l~~~~g  161 (390)
T TIGR02718        83 CLASLALVGPDVAGAGWAVGLLACASLASATQDIATDGMAAEHFNGRTLAKGNAVQIAGVMIGFFGGGAGTLVLFGKFG  161 (390)
T ss_pred             HHHHHHcCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            222222   1222 223333444444555555 6667788888888888988888888889999999988888776654

RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.

>TIGR00788 fbt folate/biopterin transporter

Probab=99.20  E-value=1.6e-10  Score=90.54  Aligned_cols=150  Identities=15%  Similarity=0.070  Sum_probs=106.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhcchhcccCCCchhHHHHHHHHHHHHHHHHHHHhhhhcccc-----chhHHHHHHHH
Q 030356           26 LVLIYAGLGLVAEAMEIMILSFIGPAIKSEWNLSPAQETLLTSVVFAGLLVGSYSWGFISDNYG-----RRKGLLGIAML  100 (179)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~d~~G-----~r~~~~~~~~~  100 (179)
                      ....++...++..+..........+.+.+++|+|.++.+...+...+...+-.+ +|.++||++     ||+.++++.++
T Consensus        26 ~~~~~~~~~y~~qGl~~l~~~~~~~~l~~~lg~s~~~i~~~~sl~~lpw~~K~l-~g~l~D~~~i~G~rRr~~l~~~~~l  104 (468)
T TIGR00788        26 VVLAIGLQVLFVKGIAGLMRLPLSPMLTDDLGLDGARYQRLVGLSSLGWALKPF-AGVMSDTFPLFGYTKRWYLVLSGLL  104 (468)
T ss_pred             hHHHHHHHHHHHhhHHHHhhhhhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHhcCCCCccchHHHHHHHHH
Confidence            344445545667777744445555667778999999999999999999999555 999999997     77777777666


Q ss_pred             HH-HHHHHHHHHHHHHHHH-HHHHHHHhhcCch-hhHHHHHHHhccccchhHHHHH---HHHHHHHHHHHHHHHHHHHhc
Q 030356          101 AS-VAGLLSAFSLNYLSLV-TLRGLVGIGLGSG-PVCLSWFLEFIPASNRGMWMVV---ISIFWTLGTIFEAALAWGNIL  174 (179)
Q Consensus       101 ~~-~~~~~~~~~~~~~~~~-~~~~l~G~~~g~~-~~~~~~~~~~~~~~~r~~~~~~---~~~~~~~g~~~~~~i~~~~~~  174 (179)
                      .. +....++..++..... +..++.+++.+.. ...-++..|..+ |++....+.   ......+|..+++.+++.+.+
T Consensus       105 ~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~a~~dv~~da~~~e~~~-~~~~~~~~~~s~~~~~~~~G~~vg~~l~G~l~~  183 (468)
T TIGR00788       105 GSAILYGLLPGKVSSAKVAAAFIFLAALAKALYDVLVDSLYSERIR-ESPSAGPSLVSWMWGASATGGLISSLLGGPLLD  183 (468)
T ss_pred             HHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHhHHHHHhhhhh-cCCCcCCCeeeHHHHHHHHHHHHHHHHHHHHHH
Confidence            52 3333333334433333 4778888988888 888999999998 555443333   333445899999999999887


Q ss_pred             cCC
Q 030356          175 LNS  177 (179)
Q Consensus       175 ~~~  177 (179)
                      ..+
T Consensus       184 ~~~  186 (468)
T TIGR00788       184 KTL  186 (468)
T ss_pred             hcC
Confidence            654

The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.

>PLN00028 nitrate transmembrane transporter; Provisional

Probab=99.19  E-value=1.1e-10  Score=91.59  Aligned_cols=121  Identities=13%  Similarity=0.052  Sum_probs=80.9

Q ss_pred             hcchhcccCCCchhHHHHHHHHHHHHHHHHHHHhhhhccccchh-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030356           49 GPAIKSEWNLSPAQETLLTSVVFAGLLVGSYSWGFISDNYGRRK-------GLLGIAMLASVAGLLSAFSLNYLSLVTLR  121 (179)
Q Consensus        49 ~~~~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~d~~G~r~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  121 (179)
                      .+++.+++|.++.+.+.+.++..++..+++++.|+++||++||+       .......+.++..++....++.....+..
T Consensus       276 p~~l~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~~~r~~~~~r~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~  355 (476)
T PLN00028        276 AEYFYDRFGLSLETAGAIAASFGLMNLFARPAGGYLSDVAARRFGMRGRLWALWIVQTLGGVFCIWLGRANSLGAAIVVM  355 (476)
T ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhcCcchhHHHHHHHHHHHHHHHHHhcccchHHHHHHHH
Confidence            34455668999999999999999999999999999999998762       22233333333333334444544444444


Q ss_pred             HHHHhhcCch-hhHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHH
Q 030356          122 GLVGIGLGSG-PVCLSWFLEFIPASNRGMWMVVISIFWTLGTIFEAALAW  170 (179)
Q Consensus       122 ~l~G~~~g~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~  170 (179)
                      ++.+++.+.. +...++..+.. +++|+...++.+....+|+.++|.+..
T Consensus       356 ~l~~~~~~~~~~~~~~~~~~~~-~~~~g~~~g~~~~~g~lg~~i~~~l~~  404 (476)
T PLN00028        356 ILFSIFVQAACGATFGIVPFVS-RRSLGVISGLTGAGGNVGAVLTQLLFF  404 (476)
T ss_pred             HHHHHHHHHhhhhhcccCcccC-hhhchhhhhhhhccccHHHHHHHHHHH
Confidence            5555554433 44444455554 478999999988877777777776643

>TIGR00885 fucP L-fucose:H+ symporter permease

Probab=99.18  E-value=1.1e-09  Score=84.58  Aligned_cols=127  Identities=9%  Similarity=-0.023  Sum_probs=93.2

Q ss_pred             hhhcchhccc--CCCchhHHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030356           47 FIGPAIKSEW--NLSPAQETLLTSVVFAGLLVGSYSWGFISDNYGRRKGLLGIAMLASVAGLLSAFSLNYLSLVTLRGLV  124 (179)
Q Consensus        47 ~~~~~~~~~~--~~s~~~~~~~~~~~~~~~~i~~~~~g~l~d~~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  124 (179)
                      .+.+.+.++.  +.+....+...+.+..+..+++++.+++.||+++|+++.+......+..++....++... .....+.
T Consensus       253 s~l~~y~~~~~~~~~~~~a~~~~~~~~~~~~vGR~~~~~l~~r~~~~~~l~i~~~~~~~~~ll~~~~~~~~~-~~~l~~~  331 (410)
T TIGR00885       253 TFIIQYAVRLIPGMTAGFAANYNIGAMVIFFISRFIGTWLISYLAAHKVLMAYAIIGMALCLGSIFAGGHVG-LYCLTLC  331 (410)
T ss_pred             HHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHcCChHH-HHHHHHH
Confidence            3344444443  444445566677777888999999999999999999998888888888777777665433 4556677


Q ss_pred             HhhcCch-hhHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHHHhccC
Q 030356          125 GIGLGSG-PVCLSWFLEFIPASNRGMWMVVISIFWTLGTIFEAALAWGNILLN  176 (179)
Q Consensus       125 G~~~g~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~~~~~  176 (179)
                      |++.+.. |...+...+..+++.+.....+.. . .+|+.+.|++.+++.|..
T Consensus       332 glf~s~~fp~i~sl~~~~~g~~~~~~s~~l~~-~-~~Gga~~p~l~G~~~d~~  382 (410)
T TIGR00885       332 SAFMSLMFPTIYGIALKGLGQDTKYGAAGLVM-A-IIGGGIVPPLQGFIIDMK  382 (410)
T ss_pred             HHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHH-H-HhccchHHHHHHHHHHHh
Confidence            8888777 888899999988666543444333 2 299999999999999853

This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.

>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins

Probab=99.17  E-value=6.8e-10  Score=79.58  Aligned_cols=131  Identities=21%  Similarity=0.133  Sum_probs=105.2

Q ss_pred             HHHHHHhhhcchhcccCCCchhHHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHHHHHHH-------HH
Q 030356           41 EIMILSFIGPAIKSEWNLSPAQETLLTSVVFAGLLVGSYSWGFISDNYGRRKGLLGIAMLASVAGLLSAFS-------LN  113 (179)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~d~~G~r~~~~~~~~~~~~~~~~~~~~-------~~  113 (179)
                      ..+.++.+-|.+++.+|+|.+|...+.+...+|..+| ++.|.+.|++|.+.++.++.....++...+..+       ++
T Consensus        17 t~Y~Fs~yS~~Lk~~l~~sq~~l~~l~~~~~~G~~~G-~~~G~l~d~~gp~~~l~iG~~~~~~GY~~~~l~~~~~i~~~~   95 (250)
T PF06813_consen   17 TTYTFSAYSPQLKSRLGYSQSQLNTLSTAGDIGSYFG-ILAGLLYDRFGPWVVLLIGAVLGFVGYGLLWLAVSGRIPSLP   95 (250)
T ss_pred             cccchhhhhHHHHHHhCCCHHHHHHHHHHHHHHhhcc-HHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCccCccc
Confidence            4455677779999999999999999999999999875 888999999999999999999999988766542       35


Q ss_pred             HHHHHHHHHHHHhhcCch-hhHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 030356          114 YLSLVTLRGLVGIGLGSG-PVCLSWFLEFIPASNRGMWMVVISIFWTLGTIFEAALAWGNI  173 (179)
Q Consensus       114 ~~~~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~~  173 (179)
                      ++.+.+..++.|.+.+.. ........+.|| ++||++.++.-...++++.+-..+-..+.
T Consensus        96 ~~~~~~~~~l~~~s~~~~~ta~lvt~~~NFP-~~RG~vvgilk~~~GLSaai~t~i~~~~f  155 (250)
T PF06813_consen   96 VWLMCLFLFLGGNSSCWFNTASLVTCVRNFP-RSRGTVVGILKGFFGLSAAIFTQIYSAFF  155 (250)
T ss_pred             hHHHHHHHHHHcccHHHhhhHHHHHHHHhCc-cccCceehhhhHHHHhHHHHHHHHHHHHc
Confidence            667777777777776655 566666678898 68999999999999988877655544443

>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter

Probab=99.15  E-value=5e-10  Score=87.62  Aligned_cols=147  Identities=14%  Similarity=0.065  Sum_probs=93.1

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhcch-hcccCCCchhHHHHHHHHHHHHHHHHHHHhhhhccccchhHH--------HHHHH
Q 030356           29 IYAGLGLVAEAMEIMILSFIGPAI-KSEWNLSPAQETLLTSVVFAGLLVGSYSWGFISDNYGRRKGL--------LGIAM   99 (179)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~d~~G~r~~~--------~~~~~   99 (179)
                      ....+..+.............|.+ .+++|.+..+.++..++..++..++.++.|+++||+++|+..        ..+..
T Consensus       264 ~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~  343 (465)
T TIGR00894       264 WAIWFAIFGHFWLYTILPTYLPTFISWVLRVSGKENGLLSSLPYLFAWLCSIFAGYLADFLKSSKTLSLTAARKIFNGIG  343 (465)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHH
Confidence            344444444444444444455554 556899999999999999999999999999999998755321        11111


Q ss_pred             HHHHHHHH--HHH-HHHHHHHHHHHHHHHhhcCch-hhHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 030356          100 LASVAGLL--SAF-SLNYLSLVTLRGLVGIGLGSG-PVCLSWFLEFIPASNRGMWMVVISIFWTLGTIFEAALAWGNILL  175 (179)
Q Consensus       100 ~~~~~~~~--~~~-~~~~~~~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~~~~  175 (179)
                      ........  ... ..+.....+...+.+.+.+.. +.......|..| +.+|...++.+....+|+.++|.+.+++.+.
T Consensus       344 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~l~~~i~p~l~g~~~~~  422 (465)
T TIGR00894       344 GLGPGIFAYALPYLSAAFYLTIIILTLANAVSSGPLAGVLINSLDLAP-RFLGFIKGITGLPGFIGGLIASTLAGNILSQ  422 (465)
T ss_pred             HHHHHHHHHHHHHcCCchHHHHHHHHHHHHHhhhhhhhhhhchhhcCh-hHHHHHHHHHHHHHHHHHHHHHHhhheeeCC
Confidence            11111111  111 122333333444445554444 434444556665 5899999999999999999999999988765


Q ss_pred             C
Q 030356          176 N  176 (179)
Q Consensus       176 ~  176 (179)
                      .
T Consensus       423 ~  423 (465)
T TIGR00894       423 D  423 (465)
T ss_pred             C
Confidence            3

>PRK09669 putative symporter YagG; Provisional

Probab=99.14  E-value=7.2e-10  Score=86.30  Aligned_cols=129  Identities=15%  Similarity=0.031  Sum_probs=96.0

Q ss_pred             HHhhhcchhcccCCCchhHHHHHHHHHHHHHHHHHHHhhhhcc----ccchhHHH-HHHHHHHHHHHHHHHHH------H
Q 030356           45 LSFIGPAIKSEWNLSPAQETLLTSVVFAGLLVGSYSWGFISDN----YGRRKGLL-GIAMLASVAGLLSAFSL------N  113 (179)
Q Consensus        45 ~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~d~----~G~r~~~~-~~~~~~~~~~~~~~~~~------~  113 (179)
                      ..+...++.+++|+++.+.+.+.++.-+..++..|+.|+++||    +||||..+ .+.+..++...+....+      .
T Consensus        29 ~~~l~~~~t~~~gls~~~~g~i~~i~~i~dai~dp~~G~lsD~~~~r~Grrrp~il~~~~~~~i~~~l~f~~p~~~~~~~  108 (444)
T PRK09669         29 MLFLAYFYTDVFGLSAAIMGTMFLVVRVLDAVTDPLMGALVDRTRTRHGQFRPYLLWFAIPFGVVCLLTFYTPDFGATGK  108 (444)
T ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHcccceeeEeeecCCCCCCCcchhHHHHHHHHHHHHHHHHhCCCCCcchH
Confidence            3455567778899999999999999999999999999999999    77766544 56566666655444333      2


Q ss_pred             HHHHHHHHHHHHhhcCch-hhHHHHHHHhc-cccchhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 030356          114 YLSLVTLRGLVGIGLGSG-PVCLSWFLEFI-PASNRGMWMVVISIFWTLGTIFEAALAWGNI  173 (179)
Q Consensus       114 ~~~~~~~~~l~G~~~g~~-~~~~~~~~~~~-~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~~  173 (179)
                      ...+++...+.+.+.... .+..++..|+. ++++|.+..+.......+|..+++.+...+.
T Consensus       109 ~~~~~~~~~l~~~~~t~~~ip~~al~~~~t~~~~eR~~l~~~r~~~~~~G~~i~~~~~~pl~  170 (444)
T PRK09669        109 IIYACVTYILLSLVYTAINVPYCAMPGAITNDPRERHSLQSWRFALSFIGGLIVSVIALPLV  170 (444)
T ss_pred             HHHHHHHHHHHHHHHHhhcchHHHhHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345555566667666666 66778889987 5588999888888888888877776555444

>PRK11462 putative transporter; Provisional

Probab=99.13  E-value=5.3e-09  Score=81.91  Aligned_cols=118  Identities=15%  Similarity=0.095  Sum_probs=80.4

Q ss_pred             CchhHHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHhhcCch-hhHH
Q 030356           59 SPAQETLLTSVVFAGLLVGSYSWGFISDNYGRRKGLLGIAMLASVAGLLSAFSL--NYLSLVTLRGLVGIGLGSG-PVCL  135 (179)
Q Consensus        59 s~~~~~~~~~~~~~~~~i~~~~~g~l~d~~G~r~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~G~~~g~~-~~~~  135 (179)
                      +++..+.+...+.++.+++.+++++++||+|+|+.+..+.....+..++..+.+  +...+++..++.|++.+.. +...
T Consensus       261 ~~~~~~~~l~~~~i~~iig~~l~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~l~~  340 (460)
T PRK11462        261 TPEVFVAFLTTYCVGNLIGSALAKPLTDWKCKVTIFWWTNALLAVISLAMFFVPMQASITMFVFIFVIGVLHQLVTPIQW  340 (460)
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344456677888899999999999999999999987755544444333332322  2223444556677776665 5556


Q ss_pred             HHHHHhcc-------ccchhHHHHHHHHHHHHHHHHHHHHHHHHhccC
Q 030356          136 SWFLEFIP-------ASNRGMWMVVISIFWTLGTIFEAALAWGNILLN  176 (179)
Q Consensus       136 ~~~~~~~~-------~~~r~~~~~~~~~~~~~g~~~~~~i~~~~~~~~  176 (179)
                      +++.|..+       .+..|...+.+....-+|..+++.+++.+.+..
T Consensus       341 ~m~ad~~d~~e~~tG~r~~g~~~a~~~f~~Klg~alg~~i~g~iL~~~  388 (460)
T PRK11462        341 VMMSDTVDYGEWCNGKRLTGISFAGTLFVLKLGLAFGGALIGWMLAYG  388 (460)
T ss_pred             HHHHHhHhhhHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            67766655       233356567778889999999999999888653

>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon

Probab=99.13  E-value=2.2e-08  Score=75.75  Aligned_cols=128  Identities=20%  Similarity=0.158  Sum_probs=110.0

Q ss_pred             hhcchhcccCCCchhHHHHHHHHHHHHHHHHHHHhhhhc-cccchhHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHH
Q 030356           48 IGPAIKSEWNLSPAQETLLTSVVFAGLLVGSYSWGFISD-NYGRRKGLLGIAMLASVAGLLSAFS---LNYLSLVTLRGL  123 (179)
Q Consensus        48 ~~~~~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~d-~~G~r~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~l  123 (179)
                      +.|+-.+-+|++..|...++.....|..++....|++.. |.+.++.-..++...+++..+...+   .+.+.+...-++
T Consensus       231 LEPygg~Vfgmsv~eTT~Lta~~~~G~L~G~~~~g~~l~~~~~~~~~a~~G~~~~~~~f~lii~a~~~~~~~~~~~~~~l  310 (403)
T PF03209_consen  231 LEPYGGEVFGMSVGETTRLTAFWGGGTLLGMLLAGFLLSRRLGKKRTAALGCLLGALAFALIILAGPLGSPWLFRPGVFL  310 (403)
T ss_pred             cCCchhHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHH
Confidence            346667779999999999999999999999999998877 6778887778887777776655443   466788888999


Q ss_pred             HHhhcCch-hhHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 030356          124 VGIGLGSG-PVCLSWFLEFIPASNRGMWMVVISIFWTLGTIFEAALAWGNILL  175 (179)
Q Consensus       124 ~G~~~g~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~~~~  175 (179)
                      .|++.|.. ....+...+..++++.|..+|.+..+..++..++-.+++.+.|.
T Consensus       311 ~G~g~G~f~vgals~mM~lt~~~~aG~~mG~WGaaQA~A~Glg~~~GG~~~D~  363 (403)
T PF03209_consen  311 LGLGNGLFTVGALSLMMDLTSAGRAGLFMGAWGAAQAIARGLGTFLGGALRDL  363 (403)
T ss_pred             HHHhhhHHHHHHHHHHHhCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999998 77788889999999999999999999999999999999998874

It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.

>COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only]

Probab=99.13  E-value=5.3e-09  Score=76.04  Aligned_cols=136  Identities=32%  Similarity=0.375  Sum_probs=107.7

Q ss_pred             HHHHHHHhhhcchhcccCCCc--hhHHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHHHHHHHHH--HH
Q 030356           40 MEIMILSFIGPAIKSEWNLSP--AQETLLTSVVFAGLLVGSYSWGFISDNYGRRKGLLGIAMLASVAGLLSAFSLN--YL  115 (179)
Q Consensus        40 ~~~~~~~~~~~~~~~~~~~s~--~~~~~~~~~~~~~~~i~~~~~g~l~d~~G~r~~~~~~~~~~~~~~~~~~~~~~--~~  115 (179)
                      ..........+.+..+++.+.  .+.++..+...++..++.++.|.+.||+|||+.+..+.....++.+...+..+  ..
T Consensus        16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~   95 (338)
T COG0477          16 LDLGLLSPALPLLLSTLSLSSGRLLYGLLLSAFFLGYAIGSLLAGPLGDRYGRRKVLIIGLLLFLLGTLLLALAPNVGLA   95 (338)
T ss_pred             HhcchHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHHHhCccchHH
Confidence            444444555566666666555  58899999999999999999999999999998888777655555555555554  78


Q ss_pred             HHHHHHHHHHhhcCch-hhHHHHHHHhccc-cchhHHHHHHHH-HHHHHHHHHHHHHHHHhcc
Q 030356          116 SLVTLRGLVGIGLGSG-PVCLSWFLEFIPA-SNRGMWMVVISI-FWTLGTIFEAALAWGNILL  175 (179)
Q Consensus       116 ~~~~~~~l~G~~~g~~-~~~~~~~~~~~~~-~~r~~~~~~~~~-~~~~g~~~~~~i~~~~~~~  175 (179)
                      .+.+.|++.|++.+.. +....++.|.+|+ ++|+...+.... ...+|..++|.+++.+...
T Consensus        96 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (338)
T COG0477          96 LLLILRLLQGLGGGGLLPVASALLSEWFPEATERGLAVGLVTLGAGALGLALGPLLAGLLLGA  158 (338)
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            8888999999999877 8889999999998 788999999877 6888888888777776543

>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]

Probab=99.09  E-value=1e-09  Score=82.97  Aligned_cols=152  Identities=18%  Similarity=0.106  Sum_probs=115.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhcch-hcccCCCchhHHHHHHHHHHHHHHHHHHHhhhhccc--cchhHHHHH-HHHH
Q 030356           26 LVLIYAGLGLVAEAMEIMILSFIGPAI-KSEWNLSPAQETLLTSVVFAGLLVGSYSWGFISDNY--GRRKGLLGI-AMLA  101 (179)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~d~~--G~r~~~~~~-~~~~  101 (179)
                      +.+..++++.+..+..++.+.-..|.+ .|+.|.|..++++..+.+=++.+.|.+++|+++||+  |||.+..+. .+..
T Consensus       252 k~iW~la~a~vfvYivR~gi~dW~p~YL~e~k~~s~~~a~~a~~lfE~agl~G~Ll~GwlSDklfkgrR~p~~~i~~~~i  331 (448)
T COG2271         252 KLIWLLALANVFVYVVRYGINDWGPLYLSEVKGFSLVKANWAISLFEVAGLPGTLLAGWLSDKLFKGRRGPMALIFMLLI  331 (448)
T ss_pred             hHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcccccchHHHHHHHHH
Confidence            445566667777777777666555554 556899999999999999999999999999999994  677665444 3334


Q ss_pred             HHHHHHHHHHH--HHHHHHHHHHHHHhhcCch-hhHHHHHHHhccccchhHHHHHHHHHHHH-HHHHHHHHHHHHhccCC
Q 030356          102 SVAGLLSAFSL--NYLSLVTLRGLVGIGLGSG-PVCLSWFLEFIPASNRGMWMVVISIFWTL-GTIFEAALAWGNILLNS  177 (179)
Q Consensus       102 ~~~~~~~~~~~--~~~~~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~-g~~~~~~i~~~~~~~~~  177 (179)
                      .++.+....++  |+....+..+.+|+...+. ........|..|++.-|++.|+...+..+ |...+....+++.|.+|
T Consensus       332 ~~~~~~~w~~~~~~~~l~~~~l~~iGf~IyGPqmLiGl~a~e~~pK~AaGtA~Gf~Glf~Yl~Ga~~a~~~~g~i~d~~g  411 (448)
T COG2271         332 TASLVLYWLAPNGSYLLDAILLFIIGFLIYGPQMLIGLAAAEFVPKKAAGTATGFVGLFAYLIGAALAGLPLGYIADTWG  411 (448)
T ss_pred             HHHHHHHHcCCCccHHHHHHHHHHHHHHHhhHHHHHHHHHhccccHhhccchhchhhhHHHHhhHHhcCCcceeeEecCC
Confidence            44444455554  4577777888888877665 66677789999999999999999888877 88888888888877644

>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]

Probab=99.07  E-value=1.2e-08  Score=78.98  Aligned_cols=144  Identities=19%  Similarity=0.169  Sum_probs=112.7

Q ss_pred             HHHHHHHHHHHHHhhhcchhcc-cCCCchhHHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHHHHHHHH
Q 030356           34 GLVAEAMEIMILSFIGPAIKSE-WNLSPAQETLLTSVVFAGLLVGSYSWGFISDNYGRRKGLLGIAMLASVAGLLSAFSL  112 (179)
Q Consensus        34 ~~~~~~~~~~~~~~~~~~~~~~-~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~d~~G~r~~~~~~~~~~~~~~~~~~~~~  112 (179)
                      ..++.............++.+. +|.++.+..+.......+.+++.+++.++.+|+|+|+++..+.++.+++.+..-+.+
T Consensus       244 ~~l~~~~~~~i~~s~~~yy~~y~lg~~~l~~~~~~~~~~~~~l~~~~~~p~L~~~~gkk~~~~~~~~~~~i~~~~~~f~~  323 (467)
T COG2211         244 MNLLLFIAFNIRGSIMVYYVTYVLGDPELFAYLLLLASGAGLLIGLILWPRLVKKFGKKKLFLIGLLLLAVGYLLLYFTP  323 (467)
T ss_pred             HHHHHHHHHHHHhhhhheeEEEEcCChHHHHHHHHHHHHHHHHHHHHhHHHHHHHhchHHHHHHHHHHHHHHHHHHHhhc
Confidence            3444444445555555666554 676777788888888888889999999999999999999999999999998887765


Q ss_pred             --HHHHHHHHHHHHHhhcCch-hhHHHHHHHhc------cc-cchhHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Q 030356          113 --NYLSLVTLRGLVGIGLGSG-PVCLSWFLEFI------PA-SNRGMWMVVISIFWTLGTIFEAALAWGNILLNS  177 (179)
Q Consensus       113 --~~~~~~~~~~l~G~~~g~~-~~~~~~~~~~~------~~-~~r~~~~~~~~~~~~~g~~~~~~i~~~~~~~~~  177 (179)
                        +...+++..++.+++.+.. +...++++|..      .. +.-|...+.+....-+|..++..+.+++....|
T Consensus       324 ~~~~~l~~~~~~i~~~g~~~~~~l~wam~~d~vDyge~~TG~R~eGi~~s~~tF~~K~g~ala~~~~g~~L~~~G  398 (467)
T COG2211         324 AGSVVLIVVALIIAGVGTGIANPLPWAMVADTVDYGEWKTGVRREGIVYSGMTFFRKLGLALAGFIPGWILGAIG  398 (467)
T ss_pred             CcchHHHHHHHHHHHHHhhccccccHHHhcchhhHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence              6777888889999999888 77777776543      22 223778888999999999999988888887654

>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]

Probab=99.04  E-value=3.5e-09  Score=79.68  Aligned_cols=147  Identities=15%  Similarity=0.053  Sum_probs=117.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhcchhcc-cCCCchhHHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHH
Q 030356           28 LIYAGLGLVAEAMEIMILSFIGPAIKSE-WNLSPAQETLLTSVVFAGLLVGSYSWGFISDNYGRRKGLLGIAMLASVAGL  106 (179)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~d~~G~r~~~~~~~~~~~~~~~  106 (179)
                      ...-.++.+++.........+++.+.+| .|.++.+.....+.+..+..+|+.+..++..|+...|.+....+...+.++
T Consensus       238 ~~~gvl~~FlYVG~Eva~gsfl~~y~~~~~g~~~~~aa~~~s~~~~~~~vGRFig~~lm~~~~~~k~Laf~a~~~ill~~  317 (422)
T COG0738         238 LRLGVLAIFLYVGAEVAIGSFLVSYLEELLGLNEQQAAYYLSFFWVGFMVGRFIGSALMSRIKPEKYLAFYALIAILLLL  317 (422)
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHH
Confidence            3444445666766677777777777666 888999999999999999999999999999999999999998888888888


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhcCch-hhHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Q 030356          107 LSAFSLNYLSLVTLRGLVGIGLGSG-PVCLSWFLEFIPASNRGMWMVVISIFWTLGTIFEAALAWGNILLNS  177 (179)
Q Consensus       107 ~~~~~~~~~~~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~~~~~~  177 (179)
                      ..++.++.. -+...++.|+..+.+ |...+...+..| ++... .|..-....+|+.+.|.+-+++.|+.+
T Consensus       318 ~~~l~~g~v-~~~~l~~ig~F~simfPTIfslal~~l~-~~ts~-~s~~l~maivGGAiiP~l~G~i~d~~g  386 (422)
T COG0738         318 AVALIGGVV-ALYALFLIGLFNSIMFPTIFSLALKNLG-EHTSV-GSGLLVMAIVGGAIIPPLQGVIADMFG  386 (422)
T ss_pred             HHHHhcChH-HHHHHHHHHHHhHHHHHHHHHHHHhccC-ccccc-cceeeeeheecchHHHHHHHHHHHhhh
Confidence            888888844 344567889999998 999999999998 44333 344445556788889999999999865

>PRK10429 melibiose:sodium symporter; Provisional

Probab=99.04  E-value=5.7e-09  Score=81.98  Aligned_cols=127  Identities=16%  Similarity=0.034  Sum_probs=92.8

Q ss_pred             HhhhcchhcccCCCchhHHHHHHHHHHHHHHHHHHHhhhhc----cccchh-HHHHHHHHHHHHHHHHHHHH------HH
Q 030356           46 SFIGPAIKSEWNLSPAQETLLTSVVFAGLLVGSYSWGFISD----NYGRRK-GLLGIAMLASVAGLLSAFSL------NY  114 (179)
Q Consensus        46 ~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~d----~~G~r~-~~~~~~~~~~~~~~~~~~~~------~~  114 (179)
                      .++..++.+.+|+++.+.|.+..+.-+-.++..|+.|.++|    |+|||| .++.+.+..+++..++...+      .+
T Consensus        27 ~~l~~yyt~v~Gls~~~vg~i~~i~ri~dai~dp~~G~lsD~t~sr~Grrrp~il~g~i~~~i~~~llf~~p~~~~~~~~  106 (473)
T PRK10429         27 MYLMYYYTDVVGLSVGLVGTLFLVARIWDAINDPIMGWIVNNTRSRWGKFKPWILIGTLANSVVLFLLFSAHLFEGTAQY  106 (473)
T ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhchheeehhcCCCCCCCcchhHhhhhHHHHHHHHHHHcCCCCCccHHH
Confidence            34445666678999999999999999999999999999999    569855 45556666666655543322      13


Q ss_pred             HHHHHHHHHHHhhcCch-hhHHHHHHHhc-cccchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 030356          115 LSLVTLRGLVGIGLGSG-PVCLSWFLEFI-PASNRGMWMVVISIFWTLGTIFEAALAWGN  172 (179)
Q Consensus       115 ~~~~~~~~l~G~~~g~~-~~~~~~~~~~~-~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~  172 (179)
                      ..+.+..++.+++.... .+..++..|+. ++++|.+..+.-.....+|+.+.+.+...+
T Consensus       107 ~~~~~~~~l~~~~~t~~~ip~~al~~~lt~~~~eR~~l~~~~~~~~~ig~~~~~~~~~~~  166 (473)
T PRK10429        107 VFVCVTYILWGMTYTIMDIPFWSLVPTLTLDKREREQLVPYPRFFASLAGFVTAGFTLPF  166 (473)
T ss_pred             HHHHHHHHHHHHHHHHHcchHHhhhHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34445556667777777 77888999988 589999998886777777766665554443

>PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans

Probab=99.00  E-value=1.2e-07  Score=63.23  Aligned_cols=117  Identities=10%  Similarity=0.066  Sum_probs=96.9

Q ss_pred             CCchhHHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCch-hhHHH
Q 030356           58 LSPAQETLLTSVVFAGLLVGSYSWGFISDNYGRRKGLLGIAMLASVAGLLSAFSLNYLSLVTLRGLVGIGLGSG-PVCLS  136 (179)
Q Consensus        58 ~s~~~~~~~~~~~~~~~~i~~~~~g~l~d~~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~-~~~~~  136 (179)
                      .++...-.-.++......+++++.+.+.+++|.|+.++++.+...+..... +-++.+.++....+.|++.+.. .....
T Consensus        34 i~~~~G~~slai~Y~~~~~s~l~~P~iv~~lg~K~sm~lg~~~y~~y~~~~-~~~~~~~l~~~s~l~G~~~a~lW~aqg~  112 (156)
T PF05978_consen   34 ISAGLGYYSLAILYGSFAISCLFAPSIVNKLGPKWSMILGSLGYAIYIASF-FYPNSYTLYPASALLGFGAALLWTAQGT  112 (156)
T ss_pred             ccccccHHHHHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHHH-HhhhHHHHHHHHHHHhhhhHHhhHhhhH
Confidence            344445556677777788899999999999999999999999887665554 4556778889999999999998 77788


Q ss_pred             HHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 030356          137 WFLEFIPASNRGMWMVVISIFWTLGTIFEAALAWGNILL  175 (179)
Q Consensus       137 ~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~~~~  175 (179)
                      ++.+...++.|++..+++......+.++|.++...+.+.
T Consensus       113 ylt~~s~~~~~~~~~~ifw~i~~~s~i~G~~~~~~~~~~  151 (156)
T PF05978_consen  113 YLTSYSTEETIGRNTGIFWAIFQSSLIFGNLFLFFIFQG  151 (156)
T ss_pred             HHHHcCCHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            999999999999999999988888988888887776554

UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein [].

>KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only]

Probab=99.00  E-value=3e-09  Score=79.44  Aligned_cols=97  Identities=22%  Similarity=0.230  Sum_probs=77.7

Q ss_pred             HHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHHHHHHHH--HH--HHHHHHHHHHHhhcCchhhHHHHHHHhcccc
Q 030356           70 VFAGLLVGSYSWGFISDNYGRRKGLLGIAMLASVAGLLSAFSL--NY--LSLVTLRGLVGIGLGSGPVCLSWFLEFIPAS  145 (179)
Q Consensus        70 ~~~~~~i~~~~~g~l~d~~G~r~~~~~~~~~~~~~~~~~~~~~--~~--~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~  145 (179)
                      ..+...-|.++.+++.||+|||+.+..+.++.+++.++...+.  |.  .+++..|++...+.   .+.+.|..|++|.+
T Consensus       390 tslaefPGlLIt~~iverlGRKkTMal~l~~f~iflfll~~c~~rn~~tvllf~arafisg~f---qvaYvYtPEVyPTa  466 (528)
T KOG0253|consen  390 TSLAEFPGLLITGVIVERLGRKKTMALSLILFGIFLFLLTTCKTRNAYTVLLFTARAFISGAF---QVAYVYTPEVYPTA  466 (528)
T ss_pred             HHHhhCCchhHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHhchh---eEEEEecCcccchh
Confidence            3455667889999999999999999999999998888766543  32  22334555543222   66788899999999


Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHH
Q 030356          146 NRGMWMVVISIFWTLGTIFEAALA  169 (179)
Q Consensus       146 ~r~~~~~~~~~~~~~g~~~~~~i~  169 (179)
                      .|+++.|.-.....+|+++.|+++
T Consensus       467 vRatgvGtcSsmaRIggI~~p~iA  490 (528)
T KOG0253|consen  467 VRATGVGTCSSMARIGGIFSPVIA  490 (528)
T ss_pred             hhhcchhhhhhHHhhhhhhhhHHH
Confidence            999999999999999999999998

>PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters

Probab=98.99  E-value=5.7e-09  Score=61.95  Aligned_cols=80  Identities=18%  Similarity=0.184  Sum_probs=73.1

Q ss_pred             HHHHHHHHHhhhcchhcccCCCchhHHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030356           38 EAMEIMILSFIGPAIKSEWNLSPAQETLLTSVVFAGLLVGSYSWGFISDNYGRRKGLLGIAMLASVAGLLSAFSLNYLSL  117 (179)
Q Consensus        38 ~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~d~~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~  117 (179)
                      .++.++.+.+.+|.+.+|.++|.++.+++.+...+|+.+|++...++.++..+++.+..+.+...+....+++.++....
T Consensus         4 mGigRFayTplLP~M~~~~~ls~~~ag~lasaNy~GYL~GAl~~~~~~~~~~~~~~~~~~l~~~~~~~~~ma~~~~~~~w   83 (85)
T PF06779_consen    4 MGIGRFAYTPLLPLMQADGGLSLSQAGWLASANYLGYLVGALLASRLPRHSRPRRLLRAGLLLTVLSTAAMALTHSFWLW   83 (85)
T ss_pred             hhhHHHHHHhHhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHhchHHH
Confidence            46678888999999999999999999999999999999999999999999888999999999999999999988776543

Note that many members are hypothetical proteins.

>PF03825 Nuc_H_symport: Nucleoside H+ symporter

Probab=98.96  E-value=2.8e-08  Score=76.44  Aligned_cols=109  Identities=22%  Similarity=0.226  Sum_probs=85.3

Q ss_pred             HHHHHHHHHHHHhhhcchhcccCCCchhHHHHHHHHHHHHHHHHHHHhhhhcccc-chhHHHHHHHHHHHHHHHHHHHHH
Q 030356           35 LVAEAMEIMILSFIGPAIKSEWNLSPAQETLLTSVVFAGLLVGSYSWGFISDNYG-RRKGLLGIAMLASVAGLLSAFSLN  113 (179)
Q Consensus        35 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~d~~G-~r~~~~~~~~~~~~~~~~~~~~~~  113 (179)
                      ++.++.......+..+.+.++.|+|..|+|.+.++..+..+++.+++|.++||.+ +|+.+.+..++.++........++
T Consensus        11 ~f~~f~~~G~~~p~~~~~L~~~G~s~~qIG~l~a~~~~~~i~~~~~~g~~aDr~~~~~~~l~~~~l~~~~~~~~~~~~~~   90 (400)
T PF03825_consen   11 YFLYFFAYGAFLPYLPLYLESRGFSGTQIGILLAVGPLARIVSPPFWGAIADRFGSAKRILALLSLLSALALLLLAFSSS   90 (400)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            3445555566666677888889999999999999999999999999999999986 566776777777776666667778


Q ss_pred             HHHHHHHHHHHHhhcCch-hhHHHHHHHhcc
Q 030356          114 YLSLVTLRGLVGIGLGSG-PVCLSWFLEFIP  143 (179)
Q Consensus       114 ~~~~~~~~~l~G~~~g~~-~~~~~~~~~~~~  143 (179)
                      ++.++...++..+..... +...+...+...
T Consensus        91 f~~~~~~~~l~~~~~~p~~pl~dsi~~~~~~  121 (400)
T PF03825_consen   91 FWWLFVIMLLFSFFFSPTMPLSDSIALSYLG  121 (400)
T ss_pred             HHHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence            887777777778777666 766676666654

>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial

Probab=98.95  E-value=9.7e-08  Score=75.17  Aligned_cols=113  Identities=16%  Similarity=0.088  Sum_probs=91.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHhh----hhcc-ccchhHH--HHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHh
Q 030356           63 ETLLTSVVFAGLLVGSYSWGF----ISDN-YGRRKGL--LGIAMLASVAGLLSAF---------SLNYLSLVTLRGLVGI  126 (179)
Q Consensus        63 ~~~~~~~~~~~~~i~~~~~g~----l~d~-~G~r~~~--~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~l~G~  126 (179)
                      .+++.++..+...+.+++..+    +.|| .+.+...  .++.++.+++....++         ..+.+++....++.++
T Consensus       314 ~~~~~~~n~~~iil~~p~~~~~~~~l~~~~~~~~~~~k~~~G~~l~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~~~~~  393 (475)
T TIGR00924       314 VIWFQSLNPFWVVVGSPVLAMIWTRLGRKGKDPTTPLKFTLGMLFCGASFLTFAASIWFADAGGLTSPWFMVLIYLFQTL  393 (475)
T ss_pred             HHHHHhhhHHHHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccCHHHHHHHHHHHHH
Confidence            678888888888888887554    4554 3333433  6777777777766654         3478888999999999


Q ss_pred             hcCch-hhHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 030356          127 GLGSG-PVCLSWFLEFIPASNRGMWMVVISIFWTLGTIFEAALAWGNILL  175 (179)
Q Consensus       127 ~~g~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~~~~  175 (179)
                      |.... |...+++.+..|++.||++++++.....+|..+++.+.....+.
T Consensus       394 ge~~~~p~~~~~~~~~aP~~~~g~~~g~~~l~~~~g~~l~~~~~~~~~~~  443 (475)
T TIGR00924       394 GELMISPLGLSWWTKIAPQRLMGQMLGMWFLAQAMGSLLGGYLATFGAVP  443 (475)
T ss_pred             HHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            99998 99999999999999999999999999999999998888876544

The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.

>PRK11462 putative transporter; Provisional

Probab=98.91  E-value=4.1e-08  Score=76.97  Aligned_cols=129  Identities=9%  Similarity=-0.028  Sum_probs=99.4

Q ss_pred             HhhhcchhcccCCCchhHHHHHHHHHHHHHHHHHHHhhhhcc----ccchhHHH-HHHHHHHHHHHHHHHHHH------H
Q 030356           46 SFIGPAIKSEWNLSPAQETLLTSVVFAGLLVGSYSWGFISDN----YGRRKGLL-GIAMLASVAGLLSAFSLN------Y  114 (179)
Q Consensus        46 ~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~d~----~G~r~~~~-~~~~~~~~~~~~~~~~~~------~  114 (179)
                      .++..++.+..|+++..+|.+..+.-+-.++.-|+.|.++||    +||||+.+ .+.+..++..+++...++      .
T Consensus        30 ~~l~~fyt~~~Gl~~~~~g~i~~~~ri~Dai~Dp~~G~~~D~t~~r~Gr~rp~il~g~i~~~i~~~llf~~p~~s~~~~~  109 (460)
T PRK11462         30 LYMMFFYTDIFGIPAGFVGTMFLVARALDAISDPCMGLLADRTRSRWGKFRPWVLFGALPFGIVCVLAYSTPDLSMNGKM  109 (460)
T ss_pred             HHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHhhhheehhccCCCCCCCcchhHhHHHHHHHHHHHHHHhCCCCCcchHH
Confidence            344556667789999999999999999999999999999996    78877665 455666666665544332      3


Q ss_pred             HHHHHHHHHHHhhcCch-hhHHHHHHHhcc-ccchhHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 030356          115 LSLVTLRGLVGIGLGSG-PVCLSWFLEFIP-ASNRGMWMVVISIFWTLGTIFEAALAWGNIL  174 (179)
Q Consensus       115 ~~~~~~~~l~G~~~g~~-~~~~~~~~~~~~-~~~r~~~~~~~~~~~~~g~~~~~~i~~~~~~  174 (179)
                      ..+.+.-.+..++.... .+..++..|+.+ +|+|.+..++...+..+|..+++.+...+.+
T Consensus       110 ~y~~~~~~~~~~~~t~~~ipy~al~~~lt~d~~eRt~l~s~r~~~~~iG~~~~~~~~~plv~  171 (460)
T PRK11462        110 IYAAITYTLLTLLYTVVNIPYCALGGVITNDPTQRISLQSWRFVLATAGGMLSTVLMMPLVN  171 (460)
T ss_pred             HHHHHHHHHHHHHHHHHhccHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34455566677777777 778889999877 6999999999999999988888777665554

>PF13347 MFS_2: MFS/sugar transport protein

Probab=98.91  E-value=4.7e-09  Score=81.38  Aligned_cols=131  Identities=21%  Similarity=0.124  Sum_probs=103.7

Q ss_pred             HhhhcchhcccCCCchhHHHHHHHHHHHHHHHHHHHhhhhc----cccchhHHH-HHHHHHHHHHHHHHHH-H-------
Q 030356           46 SFIGPAIKSEWNLSPAQETLLTSVVFAGLLVGSYSWGFISD----NYGRRKGLL-GIAMLASVAGLLSAFS-L-------  112 (179)
Q Consensus        46 ~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~d----~~G~r~~~~-~~~~~~~~~~~~~~~~-~-------  112 (179)
                      .+..+++.+..|+++...+.+..+.-+-.++..|+.|.++|    |+||||..+ .+....+++.+++... +       
T Consensus        22 ~~~~~f~~~~~gl~~~~~g~i~~~~~i~dai~dp~~G~~sDr~~tr~Grrrp~~l~g~i~~~~~~~llf~~~p~~~~~~~  101 (428)
T PF13347_consen   22 SYLLYFYTDVLGLSPALAGLILLVGRIWDAITDPLIGYLSDRTRTRWGRRRPWILIGAILLALSFFLLFSPPPAGLSFTA  101 (428)
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHHhhhhcCCcEEEEEeeecccccccceEeehhhHHHHHHHHHhhccccchhhhhh
Confidence            45557777778999999999999999999999999999999    899887655 5667777777666644 3       


Q ss_pred             HHHHHHHHHHHHHhhcCch-hhHHHHHHHhcc-ccchhHHHHHHHHHHHHHHHHHHHHHHHHhccC
Q 030356          113 NYLSLVTLRGLVGIGLGSG-PVCLSWFLEFIP-ASNRGMWMVVISIFWTLGTIFEAALAWGNILLN  176 (179)
Q Consensus       113 ~~~~~~~~~~l~G~~~g~~-~~~~~~~~~~~~-~~~r~~~~~~~~~~~~~g~~~~~~i~~~~~~~~  176 (179)
                      ....+.+..++..++.... .+..++..|..+ +++|.+..+.-+....+|..+...+...+.+..
T Consensus       102 ~~~~~~~~~~l~~~~~t~~~i~~~al~~~lt~~~~~R~~l~~~~~~~~~~g~~l~~~~~~~l~~~~  167 (428)
T PF13347_consen  102 KLVWLFVFYILFDIAYTFVQIPYNALIPELTPDPDERTRLSSWRMIFSMIGSLLASFLAPILVSWF  167 (428)
T ss_pred             HHHHHHHHHHHHHHhhhhccCchhhcCccccccHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhh
Confidence            2233456666678888887 778899999988 478999999999888888877777777666543

>PRK09584 tppB putative tripeptide transporter permease; Reviewed

Probab=98.85  E-value=7.4e-07  Score=70.67  Aligned_cols=108  Identities=16%  Similarity=0.042  Sum_probs=87.3

Q ss_pred             HHHHHHHHHHHHHHHHHHH----hhhhccccchhHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHhhcC
Q 030356           63 ETLLTSVVFAGLLVGSYSW----GFISDNYGRRKGLLGIAMLASVAGLLSAFSLN---------YLSLVTLRGLVGIGLG  129 (179)
Q Consensus        63 ~~~~~~~~~~~~~i~~~~~----g~l~d~~G~r~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~l~G~~~g  129 (179)
                      .+++.++..+...+..++.    +++.||++.++.+.++.++.+++.+.+....+         .+++....++.|++..
T Consensus       318 ~~~~~s~n~i~iil~~p~~~~~~~~l~~r~~~~~~~~~G~~l~~l~f~~l~~~~~~~~~~~~vs~~~~~~~~~l~~~ge~  397 (500)
T PRK09584        318 PEQYQALNPFWIMIGSPILAAIYNKMGDRLPMPHKFAIGMVLCSGAFLVLPLGAKFANDAGIVSVNWLIASYGLQSIGEL  397 (500)
T ss_pred             HHHHHHHhHHHHHHHHHHHHHHHHHhCcCCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHHHH
Confidence            5666777776666666665    67777777778888999999999888776655         3567888999999999


Q ss_pred             ch-hhHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHH
Q 030356          130 SG-PVCLSWFLEFIPASNRGMWMVVISIFWTLGTIFEAALAW  170 (179)
Q Consensus       130 ~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~  170 (179)
                      .. |...+++.+..|++.||+.+|++.....+|..++..+..
T Consensus       398 ~~~p~g~s~~~~~aP~~~rg~~~g~~~l~~a~g~~~~g~~~~  439 (500)
T PRK09584        398 MISGLGLAMVAQLVPQRLMGFIMGSWFLTTAGAALIAGYVAN  439 (500)
T ss_pred             HHhHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            98 999999999999999999999998888777777766654

>TIGR00788 fbt folate/biopterin transporter

Probab=98.85  E-value=9.8e-09  Score=80.57  Aligned_cols=124  Identities=10%  Similarity=0.018  Sum_probs=105.2

Q ss_pred             cccCCCchhHHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHH
Q 030356           54 SEWNLSPAQETLLTSVVFAGLLVGSYSWGFISDNYGRRKGLLGIAMLASVAGLLSAF----------SLNYLSLVTLRGL  123 (179)
Q Consensus        54 ~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~d~~G~r~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~l  123 (179)
                      +.+|.++.+.|.+.....++.+++....+++.+|++.|+++.++.++.+++......          .++...+....++
T Consensus       281 ~~lG~s~~~~G~~~~~~~v~~i~g~~~~~~~~~~~~~r~~l~~~~~l~~~~~~~~~~l~~~~~~~~gi~~~~~~~~~~~l  360 (468)
T TIGR00788       281 QCLPGGPSFSGMSKVVGNLGSLCGVGGYDRFLKTFPYRLLFGVTTLLYTLSSLFDLILVKRWNLAFGISDEVFVLGDSII  360 (468)
T ss_pred             ccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHhCceeeeeccccccCCCCeeeeeehhHH
Confidence            468999999999999999999999999999999999999999999888887754321          0232334455677


Q ss_pred             HHhhcCch-hhHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Q 030356          124 VGIGLGSG-PVCLSWFLEFIPASNRGMWMVVISIFWTLGTIFEAALAWGNILLNS  177 (179)
Q Consensus       124 ~G~~~g~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~~~~~~  177 (179)
                      .+++.+.. .+...++.+..|++++++..++++...++|..+++.+++.+.+..|
T Consensus       361 ~~~~~g~~~~~~~~~~~~~~p~~~egt~~al~~s~~~lg~~v~~~~gg~l~~~~g  415 (468)
T TIGR00788       361 AEVLAQLKFMPFLVLLARLCPSGCESSVFALLASILHLGSSVSGFLGVLLMETIG  415 (468)
T ss_pred             HHHHHHHHHccHHHHHHHhCCCCceehHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            88888777 7789999999999999999999999999999999999999988654

The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.

>PRK09848 glucuronide transporter; Provisional

Probab=98.83  E-value=1.4e-07  Score=73.59  Aligned_cols=125  Identities=10%  Similarity=-0.060  Sum_probs=82.4

Q ss_pred             HhhhcchhcccCCCchhHHHHHHHHHHHHHHHHHHHhhhhccc----cchhHH-HHHHHHHHHHHHHHH-HH------HH
Q 030356           46 SFIGPAIKSEWNLSPAQETLLTSVVFAGLLVGSYSWGFISDNY----GRRKGL-LGIAMLASVAGLLSA-FS------LN  113 (179)
Q Consensus        46 ~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~d~~----G~r~~~-~~~~~~~~~~~~~~~-~~------~~  113 (179)
                      .++.+++.++.|+++.+.|.+.++..+..++..++.|+++||.    ||||.. ..+.+...+...+.. ..      ..
T Consensus        29 ~~l~~y~~~~~gl~~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~~~~~Gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  108 (448)
T PRK09848         29 LFLLSYYTDVAGVGAAAAGTMLLLVRVFDAFADVFAGRVVDSVNTRWGKFRPFLLFGTAPLMIFSVLVFWVPTDWSHSSK  108 (448)
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhhhheeeeecCCCCCcCchHHHHHHHHHHHHHHHHHHhCcCCCCcchH
Confidence            3444666777899999999999999999999999999999996    777755 444444443333321 11      12


Q ss_pred             HHHHHHHHHHHHhhcCch-hhHHHHHHHhcc-ccchhHHHHHHHHHHH-----HHHHHHHHHHH
Q 030356          114 YLSLVTLRGLVGIGLGSG-PVCLSWFLEFIP-ASNRGMWMVVISIFWT-----LGTIFEAALAW  170 (179)
Q Consensus       114 ~~~~~~~~~l~G~~~g~~-~~~~~~~~~~~~-~~~r~~~~~~~~~~~~-----~g~~~~~~i~~  170 (179)
                      ....+....+.+++.+.. ++..++..|..+ +++|.+..+....+..     ++..++|.++.
T Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~r~~~~~~r~~~~~~~~~~~~~~~~p~i~~  172 (448)
T PRK09848        109 VVYAYLTYMGLGLCYSLVNIPYGSLATAMTQQPQSRARLGAARGIAASLTFVCLAFLIGPSIKN  172 (448)
T ss_pred             HHHHHHHHHHHHHHHHHhcccHhhhhhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            223344456677777776 666677776654 4678887776554433     34445555554

>KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=98.83  E-value=3.3e-08  Score=75.45  Aligned_cols=155  Identities=15%  Similarity=0.062  Sum_probs=115.1

Q ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhcccCCCchhHHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHH
Q 030356           20 FGKFQILVLIYAGLGLVAEAMEIMILSFIGPAIKSEWNLSPAQETLLTSVVFAGLLVGSYSWGFISDNYGRRKGLLGIAM   99 (179)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~d~~G~r~~~~~~~~   99 (179)
                      ..++||..+...++..+.+...+-.++....+..+.|+ +.+.+.|...++.+.+....+..-|+.||+|-|....++..
T Consensus        39 Vy~rRW~vLl~~slL~~SN~~qWI~ya~i~n~~~~~Yg-s~~~~~wlsmIym~v~vp~gf~~mw~ldk~GLR~a~llgt~  117 (480)
T KOG2563|consen   39 VYPRRWVVLLAFSLLNFSNGMQWIQYAPINNYVNSFYG-SSSAADWLSMIYMVVSVPFGFAAMWILDKFGLRTALLLGTV  117 (480)
T ss_pred             cchhHhHHHHHHHHHHhcCcchheeehhHHHHHHHHhc-chHHHHHHHHHHHHHHHHHhhHHHHhhcccchHHHHHHHHH
Confidence            34566777777666666666555555555455555677 77888999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHH------HHH--HHHHHHHHHHhhcCch-hhHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHH
Q 030356          100 LASVAGLLSAFSL------NYL--SLVTLRGLVGIGLGSG-PVCLSWFLEFIPASNRGMWMVVISIFWTLGTIFEAALAW  170 (179)
Q Consensus       100 ~~~~~~~~~~~~~------~~~--~~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~  170 (179)
                      +.+++..+-..+.      .+.  ....+..+.+..+-.. ....-....|||+++|..+..+-..+..+|..++.++.-
T Consensus       118 ln~iGa~Ir~iss~p~v~~~f~~~l~~~Gq~iaa~Aq~Fim~lPskiA~~WF~~~qra~A~~~~v~~n~LGvavg~llpp  197 (480)
T KOG2563|consen  118 LNGIGAWIRLISSLPFVPPLFRRPLTHTGQSIAAAAQPFILGLPSKIAAVWFPPDQRAIATVLGVMGNPLGVAVGFLLPP  197 (480)
T ss_pred             HHHHHHHHhhhccCccccccchhhhhHHhHHHHHHhhhHhhccccHHHHhhCCcchhhhhhhHHHhcchHHHHHHhhccc
Confidence            9999987654432      223  4455666666666555 333445567999999999999988888888887777766


Q ss_pred             HHhcc
Q 030356          171 GNILL  175 (179)
Q Consensus       171 ~~~~~  175 (179)
                      .++..
T Consensus       198 ilV~~  202 (480)
T KOG2563|consen  198 ILVPS  202 (480)
T ss_pred             eecCC
Confidence            66544

>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []

Probab=98.81  E-value=7.6e-08  Score=73.68  Aligned_cols=137  Identities=18%  Similarity=0.128  Sum_probs=77.4

Q ss_pred             HHHHHHHHHHHhhhcchhc-ccCCCchhHHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHH--HHHHHH-HHH
Q 030356           36 VAEAMEIMILSFIGPAIKS-EWNLSPAQETLLTSVVFAGLLVGSYSWGFISDNYGRRKGLLGIAMLAS--VAGLLS-AFS  111 (179)
Q Consensus        36 ~~~~~~~~~~~~~~~~~~~-~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~d~~G~r~~~~~~~~~~~--~~~~~~-~~~  111 (179)
                      +.......+..++.+.+.+ +.|+|.+|.|.+.++..+...+.+|+.|.++||+|.||-++.......  .+.+.. .+.
T Consensus        17 f~~Ff~~gi~~pF~~iWL~~~~GLs~~~iG~i~s~~~~~~l~~qp~~G~i~Dklg~kK~Ll~~i~~l~~l~~pff~~v~~   96 (412)
T PF01306_consen   17 FFYFFIWGIFLPFFPIWLTQVAGLSGTEIGIIFSAGSLFALLAQPVYGFISDKLGLKKHLLWFIAILLLLFGPFFIYVFG   96 (412)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHTHHHHHHHHHHCTTCSHHHHHHHHHHHTCHHHHHHTHH
T ss_pred             HHHHHHHHHHHHHHHHHHccccCCCHHHHHHHHHHHHHHHHHHHHhHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444445555555566665 489999999999999999999999999999999997776554432222  222221 222


Q ss_pred             H----HHH-HHHHHHHHHHhhcCch-hhHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 030356          112 L----NYL-SLVTLRGLVGIGLGSG-PVCLSWFLEFIPASNRGMWMVVISIFWTLGTIFEAALAWGNIL  174 (179)
Q Consensus       112 ~----~~~-~~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~~~  174 (179)
                      |    |.. ..+++.+..|+..... +..-+++.+..  ++.+.-.|-.-...++|.+++..++|.+.+
T Consensus        97 pll~~n~~lg~iig~i~l~~~f~~~~~~~Ea~~er~s--r~~~feYG~~R~wGSig~ai~s~~~G~L~~  163 (412)
T PF01306_consen   97 PLLQSNFWLGAIIGGIYLGLVFNAGVPLSEAYAERVS--RRNGFEYGRARMWGSIGFAIASLLAGILFN  163 (412)
T ss_dssp             HHHHTT-HHHHHHTTTTTTTTTTTHHHHHHHHHHHHH--HHHSS-HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHH--HHhcCCcchHHHHhhHHHHHHHHHhheeee
Confidence            2    221 2222333334444443 44444443332  222333344456667777777777777654

The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.

>PF12832 MFS_1_like: MFS_1 like family

Probab=98.81  E-value=6e-08  Score=56.98  Aligned_cols=66  Identities=23%  Similarity=0.317  Sum_probs=55.1

Q ss_pred             HHHHHHHHHHHHhhhcchhcccCCCchhHHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHH
Q 030356           35 LVAEAMEIMILSFIGPAIKSEWNLSPAQETLLTSVVFAGLLVGSYSWGFISDNYGRRKGLLGIAML  100 (179)
Q Consensus        35 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~d~~G~r~~~~~~~~~  100 (179)
                      ++..........++.|.+.++.|+++.|.|.+.++..+...++.+++|.++||+++++.++.....
T Consensus         9 yf~~f~~~g~~~Pfl~~~~~~~Gl~~~~iGil~~i~~~~~~~~~pl~g~laDk~~~~~~~l~~~~~   74 (77)
T PF12832_consen    9 YFFYFAALGCLYPFLPLYLKQLGLSPSQIGILSAIRPLIRFLAPPLWGFLADKFGKRKVILLGSLF   74 (77)
T ss_pred             HHHHHHHHHHHHhhhhHhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCccHHHHHHHHH
Confidence            344445555566677778888999999999999999999999999999999999999988766544

>PRK10207 dipeptide/tripeptide permease B; Provisional

Probab=98.78  E-value=5.1e-07  Score=71.38  Aligned_cols=110  Identities=14%  Similarity=0.027  Sum_probs=88.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhhccccchhH-------HHHHHHHHHHHHHHHH-----HH-----HHHHHHHHHHHHHH
Q 030356           63 ETLLTSVVFAGLLVGSYSWGFISDNYGRRKG-------LLGIAMLASVAGLLSA-----FS-----LNYLSLVTLRGLVG  125 (179)
Q Consensus        63 ~~~~~~~~~~~~~i~~~~~g~l~d~~G~r~~-------~~~~~~~~~~~~~~~~-----~~-----~~~~~~~~~~~l~G  125 (179)
                      ..++.+...+...+.+++.+++.||+++|+.       +.++.++.+++.+..+     +.     .+.+.+...-++.|
T Consensus       311 ~~~~~~~n~~~iii~~pl~~~l~~rl~~r~~~~~~~~k~~~G~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~l~g  390 (489)
T PRK10207        311 PVSFQALNPFWVVVASPILAGIYTHLGSKGKDLSMPMKFTLGMFLCSLGFLTAAAAGMWFADAQGLTSPWFIVLVYLFQS  390 (489)
T ss_pred             HHHHHhHhHHHHHHHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccCHHHHHHHHHHHH
Confidence            4566666777788899999999999999973       6677777666654321     11     24566777889999


Q ss_pred             hhcCch-hhHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 030356          126 IGLGSG-PVCLSWFLEFIPASNRGMWMVVISIFWTLGTIFEAALAWGN  172 (179)
Q Consensus       126 ~~~g~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~  172 (179)
                      +|.+.. ++..+.+.+..|++.++.+++++++..++|+.++..++...
T Consensus       391 ~Ge~~~~~~g~~~~~~~aP~~~~g~~~g~~~l~~~ig~~lg~~l~~~~  438 (489)
T PRK10207        391 LGELFISALGLAMIAALVPQHLMGFILGMWFLTQAAAFLLGGYVATFT  438 (489)
T ss_pred             HHHHHHhHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            999998 88899999999999999999999999999999998887655

>PRK15403 multidrug efflux system protein MdtM; Provisional

Probab=98.76  E-value=2.1e-06  Score=66.50  Aligned_cols=132  Identities=13%  Similarity=0.070  Sum_probs=83.9

Q ss_pred             HHHHhhhcchhc-ccCCCchhHHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHHHHHH-----HHHHHH
Q 030356           43 MILSFIGPAIKS-EWNLSPAQETLLTSVVFAGLLVGSYSWGFISDNYGRRKGLLGIAMLASVAGLLSAF-----SLNYLS  116 (179)
Q Consensus        43 ~~~~~~~~~~~~-~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~d~~G~r~~~~~~~~~~~~~~~~~~~-----~~~~~~  116 (179)
                      .......|.+.+ .+|.++.+.++.......+..++..+.+++.+|..+++.+.....+..++..+...     .+++..
T Consensus       235 ~~~~~~~P~~l~~~~g~s~~~~gl~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~ig~~l~~~~~~~~~~~~~~  314 (413)
T PRK15403        235 MSWVAVSPVILIDAGGMTTSQFAWTQVPVFGAVIVANAIVARFVKDPTEPRFIWRAVPIQLVGLALLIVGNLLWPHVWLW  314 (413)
T ss_pred             HHHHHhChHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHccccHHH
Confidence            344445565554 46999999999988888888898888888765544444432222222222222211     223333


Q ss_pred             HHHHHHHHHhhcCch-hhHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 030356          117 LVTLRGLVGIGLGSG-PVCLSWFLEFIPASNRGMWMVVISIFWTLGTIFEAALAWGNILL  175 (179)
Q Consensus       117 ~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~~~~  175 (179)
                      .++..++.++|.+.. +...... ..-.+..+|++.++++.....+...++..++++.+.
T Consensus       315 ~~~~~~l~~~G~~~~~p~~~~~a-l~~~~~~~G~a~a~~~~~~~~~~~~~~~~~g~~~~~  373 (413)
T PRK15403        315 SVLGTSLYAFGIGLIFPTLFRFT-LFSNNLPKGTVSASLNMVILMVMAVSVEIGRWLWFN  373 (413)
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHH-hccCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            456777778887776 5555322 122233579999999988888888888888887655

>KOG3762 consensus Predicted transporter [General function prediction only]

Probab=98.75  E-value=1.9e-08  Score=78.21  Aligned_cols=140  Identities=11%  Similarity=-0.036  Sum_probs=119.7

Q ss_pred             HHHHHHHHHhhhcchhcccCCCchhHHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030356           38 EAMEIMILSFIGPAIKSEWNLSPAQETLLTSVVFAGLLVGSYSWGFISDNYGRRKGLLGIAMLASVAGLLSAFSLNYLSL  117 (179)
Q Consensus        38 ~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~d~~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~  117 (179)
                      .+.....+..++-...+|++-.+.-.|.....-..+-+..-++.+++.+|+|+-+++..++...++-.+...+..|.|..
T Consensus       383 mG~g~~lv~tFLfWHled~~~~~~LfGv~~a~~~~gEI~~~ffs~klI~kiGHv~v~~lgLa~~~~Rf~~~S~L~n~W~v  462 (618)
T KOG3762|consen  383 MGAGVGLVFTFLFWHLEDLGGIKTLFGVVSALCHAGEILFYFFSFKLIEKIGHVNVMYLGLACNVGRFLYYSYLQNPWMV  462 (618)
T ss_pred             HHHHHHHHHHHHHHHHhhcCCcceeeeehhhhhccchHHHHHHHHHHHHHhcccceeeehhhHHHHHHHHHHHhcCchhe
Confidence            33334444444444567788777777888888888889999999999999999999999999988888888899999999


Q ss_pred             HHHHHHHHhhcCch-hhHHHHHHHhccccchhHHHHHH-HHHHHHHHHHHHHHHHHHhccCC
Q 030356          118 VTLRGLVGIGLGSG-PVCLSWFLEFIPASNRGMWMVVI-SIFWTLGTIFEAALAWGNILLNS  177 (179)
Q Consensus       118 ~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~r~~~~~~~-~~~~~~g~~~~~~i~~~~~~~~~  177 (179)
                      +...+++|+..+.. ....++++...||+.|.++.++. ....++|-.+|.+|++.+.+.++
T Consensus       463 LPieilqgit~aliWaa~~sY~s~vaPp~l~at~Q~l~~g~f~GlG~g~GslIGG~~v~~fg  524 (618)
T KOG3762|consen  463 LPIEILQGITHALIWAAIISYASHVAPPGLRATAQGLLQGIFHGLGKGLGSLIGGFVVERFG  524 (618)
T ss_pred             eeHHHHHHHHHHHHHHHHHHHHHhhCCCcchHHHHHHHHHHhcccCcchhhhhhhhhheeeh
Confidence            99999999999999 88999999999999999999995 57778899999999999887764

>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors)

Probab=98.67  E-value=7.9e-07  Score=72.32  Aligned_cols=127  Identities=14%  Similarity=0.083  Sum_probs=103.9

Q ss_pred             hhcchhcccCCCchhHHHHHHHHHHHHHHHHHHHhhhhcc-ccchhHHHHHHHHHHHHHHHHHHHH--------HHHHHH
Q 030356           48 IGPAIKSEWNLSPAQETLLTSVVFAGLLVGSYSWGFISDN-YGRRKGLLGIAMLASVAGLLSAFSL--------NYLSLV  118 (179)
Q Consensus        48 ~~~~~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~d~-~G~r~~~~~~~~~~~~~~~~~~~~~--------~~~~~~  118 (179)
                      +..++.+.+|.+++++..+...+....-+...+.|+++|+ +|+++.+..+.++..++..+.++..        .....+
T Consensus        10 LvlYl~~~lg~~~~~A~~i~~~f~~l~yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai~a~~~~~~~~~~~~~l   89 (654)
T TIGR00926        10 LVLYFLNFLGFSESTSTVLFHTFTYLCYLTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLSFGAIPSSGHPLHDLLDL   89 (654)
T ss_pred             HHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccCcccccchHHHHHH
Confidence            3345556688999999888888888888999999999996 9999999999999999888776642        123355


Q ss_pred             HHHHHHHhhcCch-hhHHHHHHHhcccc---chhHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 030356          119 TLRGLVGIGLGSG-PVCLSWFLEFIPAS---NRGMWMVVISIFWTLGTIFEAALAWGNIL  174 (179)
Q Consensus       119 ~~~~l~G~~~g~~-~~~~~~~~~~~~~~---~r~~~~~~~~~~~~~g~~~~~~i~~~~~~  174 (179)
                      ++-.+..+|.|+. +...+...|.++++   +|-+.+.++..+.++|+.+++.+..++.+
T Consensus        90 ~gLaLia~G~GgiKp~vsaf~gdqf~~~~~~~~~s~F~~fY~~iNiGSlis~~i~~~l~~  149 (654)
T TIGR00926        90 LGLALIALGTGGIKPCVSAFGGDQFEERQLSLRSRFFSFFYFAINAGSLISTIITPILRG  149 (654)
T ss_pred             HHHHHHHhhccccccCchhhhHhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6777888899999 99999999998754   36778888899999999999998888764

>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]

Probab=98.64  E-value=1.4e-06  Score=69.37  Aligned_cols=140  Identities=19%  Similarity=0.125  Sum_probs=94.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhcchhcccCCCchhHHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHH
Q 030356           24 QILVLIYAGLGLVAEAMEIMILSFIGPAIKSEWNLSPAQETLLTSVVFAGLLVGSYSWGFISDNYGRRKGLLGIAMLASV  103 (179)
Q Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~d~~G~r~~~~~~~~~~~~  103 (179)
                      +++....+.+..+-+........++.+.+.++.+.+... .+...+..+...++..+...+.||+|||+.++.+...+.+
T Consensus       293 ~~~~~i~~~l~~fqq~tG~~~~~~Y~~~if~~~g~~~~~-~~~~~~~~~v~~~~t~~~~~lvd~~gRr~lll~s~~~m~~  371 (513)
T KOG0254|consen  293 RKRLIIGLLLQLFQQLTGINYVFYYSTTIFKSAGLKSDT-FLASIILGVVNFLGTLVATYLVDRFGRRKLLLFGAAGMSI  371 (513)
T ss_pred             HHHHHHHHHHHHHHHHhCCceEEeehHHHHHhcCCCCch-HHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHhHHHHHH
Confidence            334444455555555555555666667777777766443 6666677777778888889999999999999999999999


Q ss_pred             HHHHHHHHHHH--------------HHHHHHHHHHHhhcCchhhHHHHHHHhccccchhHHHHHHHHHHHHHHHH
Q 030356          104 AGLLSAFSLNY--------------LSLVTLRGLVGIGLGSGPVCLSWFLEFIPASNRGMWMVVISIFWTLGTIF  164 (179)
Q Consensus       104 ~~~~~~~~~~~--------------~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~  164 (179)
                      +.++++.....              .......++..+..+..+....+.+|.+|.+.|+++.++-.....+...+
T Consensus       372 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~g~g~v~w~~~sEifp~~~r~~~~s~~~~~n~~~~~~  446 (513)
T KOG0254|consen  372 CLVILAVVGVFALYYPNSSKGAGWLAIVFLCLFIFSFAIGWGPVPWVIVSEIFPLRLRSKGASLAVAVNWLWNFL  446 (513)
T ss_pred             HHHHHHHHHHHhccCCCcccchhHHHHHHHHHHHHHHhcccccchhhhhhccCcHhHHhhhHHHHHHHHHHHHHH
Confidence            88877643211              11222233333344433666678899999999999999965555554443

>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.63  E-value=1.5e-08  Score=76.22  Aligned_cols=125  Identities=13%  Similarity=0.052  Sum_probs=95.6

Q ss_pred             hcccCCCchhHHHHHHHHHHHHHHHHHHHhhhhcccc--chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCc
Q 030356           53 KSEWNLSPAQETLLTSVVFAGLLVGSYSWGFISDNYG--RRKGLLGIAMLASVAGLLSAFSLNYLSLVTLRGLVGIGLGS  130 (179)
Q Consensus        53 ~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~d~~G--~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~g~  130 (179)
                      .|++..+.-+.|...-...+.+.+++.+.|.++||++  |-..-..+.+..........+++++..+.+-++..+++.+.
T Consensus       298 ~e~m~~p~w~~G~~fLp~~~~y~ig~~lfg~la~k~~~~~wl~~~~gl~~~G~~~~~iP~~~~~~~L~vp~~~l~~~i~~  377 (464)
T KOG3764|consen  298 LETMFTPGWEVGLAFLPASLSYAIGTNLFGKLADKYPHLRWLLSLGGLATVGVSSGPIPFATSIAQLWVPNFGLGFGIGL  377 (464)
T ss_pred             HHhccCCCcceeeeecccccchhccCchHHHHHHhcCchhHHHHHHHHHHHHHHhchhHhhhhHHHHhhhhHHHHHHHHH
Confidence            3446644448898888899999999999999999999  43333444555555556677899999999888888888877


Q ss_pred             h-hhHHHHHHHhcccc------chhHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Q 030356          131 G-PVCLSWFLEFIPAS------NRGMWMVVISIFWTLGTIFEAALAWGNILLNS  177 (179)
Q Consensus       131 ~-~~~~~~~~~~~~~~------~r~~~~~~~~~~~~~g~~~~~~i~~~~~~~~~  177 (179)
                      . ........+....+      .-|...++...++.+|..+||.+++.+.+..|
T Consensus       378 ~dasl~P~l~~lvd~rh~s~~~vYGsVyaIad~a~sla~a~GP~~gg~iv~~iG  431 (464)
T KOG3764|consen  378 ADASLIPTLGYLVDPRHVSGFNVYGSVYAIADAAFSLAYAIGPTFGGSLVEAIG  431 (464)
T ss_pred             HHHHHhhhhHHhcchhhccccceeeeHHHHHHHHHHHhhhccccccchheeehh
Confidence            6 65555555544332      45788899999999999999999999988755

>KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=98.61  E-value=1.1e-09  Score=79.16  Aligned_cols=147  Identities=20%  Similarity=0.131  Sum_probs=114.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhcchhcccCCCchhHHHHHHHHHHHHHHHHHHHhhhhcc-ccchhHHHHHHHHHHHH
Q 030356           26 LVLIYAGLGLVAEAMEIMILSFIGPAIKSEWNLSPAQETLLTSVVFAGLLVGSYSWGFISDN-YGRRKGLLGIAMLASVA  104 (179)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~d~-~G~r~~~~~~~~~~~~~  104 (179)
                      ..+...++.-+..++.+........+...+.+++.++..++.+++...+.+-+.+.|++.|| +|.|..-++-+....++
T Consensus        44 m~lv~mc~lgfgsyfcyd~p~alq~~fk~d~ni~~akftLlYsvYSwPNvVlcffgGflidr~fgir~gtii~~~fv~~G  123 (459)
T KOG4686|consen   44 MALVFMCLLGFGSYFCYDAPGALQIDFKLDSNIEYAKFTLLYSVYSWPNVVLCFFGGFLIDRRFGIRLGTIILCIFVFLG  123 (459)
T ss_pred             HHHHHHHHhcccceeecCCchhhhhhhhcccccceeeeeeeeeeccCCCEEEeeecceeehhhhhhhHHHHHHHHHHHHH
Confidence            33334444445566666667777778888888898999999999999999999999999997 77776655555555666


Q ss_pred             HHHHH---HHHHHHHHHHHHHHHHhhcCch-hhHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 030356          105 GLLSA---FSLNYLSLVTLRGLVGIGLGSG-PVCLSWFLEFIPASNRGMWMVVISIFWTLGTIFEAALAWGN  172 (179)
Q Consensus       105 ~~~~~---~~~~~~~~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~  172 (179)
                      -++++   ..+.++.+..+|++.|+|.-.. ...+.++..||..|+.+.++|+......+|+.+--.+..++
T Consensus       124 qliFa~Ggi~~aFw~M~~GRF~FGIGgESlAVaQN~yav~wFKGKELn~vfGlqlSvAR~GstvNf~lm~~l  195 (459)
T KOG4686|consen  124 QLIFAAGGISHAFWTMLAGRFLFGIGGESLAVAQNKYAVYWFKGKELNFVFGLQLSVARLGSTVNFLLMPFL  195 (459)
T ss_pred             HHHHHhchHHHHHHHHHhhheeeccCchhhhhhhcceeEEEecCccccchhhHHHHHHHhhceeeeeecHHH
Confidence            66554   3678899999999999987766 67788999999999999999999988888876544444443

>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter

Probab=98.60  E-value=7.8e-06  Score=64.29  Aligned_cols=114  Identities=11%  Similarity=0.015  Sum_probs=89.4

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhhccccc-hhHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHH
Q 030356           64 TLLTSVVFAGLLVGSYSWGFISDNYGR-RKGLLGIAMLASVAGLLSAFSLN---------------------YLSLVTLR  121 (179)
Q Consensus        64 ~~~~~~~~~~~~i~~~~~g~l~d~~G~-r~~~~~~~~~~~~~~~~~~~~~~---------------------~~~~~~~~  121 (179)
                      .+....+.+...+.+++..++.+|+|+ |++..++.++.+++.....+.++                     .+..++..
T Consensus       308 ~~~l~~~s~~~~i~s~~l~~l~~~~g~~k~~~~~s~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  387 (477)
T TIGR01301       308 AFGLMLNSVVLGITSIGMEKLCRGWGAGKRLWGIVNIILAICLAATVLVTYVAKNSRYYDGDGESLPPPTGIKASALIVF  387 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhhhhccccccccccccCcchhhHHHHHHHH
Confidence            345555666666788888999999995 77778887777777766654432                     25667778


Q ss_pred             HHHHhhcCch-hhHHHHHHHhccc--cchhHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Q 030356          122 GLVGIGLGSG-PVCLSWFLEFIPA--SNRGMWMVVISIFWTLGTIFEAALAWGNILLNS  177 (179)
Q Consensus       122 ~l~G~~~g~~-~~~~~~~~~~~~~--~~r~~~~~~~~~~~~~g~~~~~~i~~~~~~~~~  177 (179)
                      .+.|+..+.. ..-++++++..++  +..|..+|++|.+..+.+++..+..+.+.+..|
T Consensus       388 ~~~Gi~~A~~~siPfal~s~~~~~~~~~~G~~mgilN~~I~lpQii~sl~~g~~~~~~g  446 (477)
T TIGR01301       388 AILGIPLAITYSIPFALASIRSSNLGAGQGLSMGVLNLAIVIPQIIVSLGSGPWDQLFG  446 (477)
T ss_pred             HHhhHHHHHHHHHhHHHHHHHccccCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            8899999888 8889999999995  455999999999999999999988888666554

This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.

>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs)

Probab=98.59  E-value=7.2e-09  Score=82.38  Aligned_cols=147  Identities=17%  Similarity=0.142  Sum_probs=2.9

Q ss_pred             HHHHHHHHHHHHHHHHHhhhcchhcccCCCchhHHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHHHHH
Q 030356           30 YAGLGLVAEAMEIMILSFIGPAIKSEWNLSPAQETLLTSVVFAGLLVGSYSWGFISDNYGRRKGLLGIAMLASVAGLLSA  109 (179)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~d~~G~r~~~~~~~~~~~~~~~~~~  109 (179)
                      .+++..+.+..........++.+.+.|+++.++.|++.+.+-++..+..++..++.+|.+|-|.+-.+.++.+++.++++
T Consensus         7 ~~~~~~~~q~~~~g~~~~~lttiErRF~l~S~~~G~i~s~~di~~~~~~~~vsy~g~~~hrprwig~g~~~~~~g~~l~~   86 (539)
T PF03137_consen    7 FLCLLGLFQMMVSGYVNSSLTTIERRFGLSSSQSGLISSSYDIGSLVVVLFVSYFGGRGHRPRWIGIGALLMGLGSLLFA   86 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcceeeecHHHHHHHHHHHh
Confidence            33444455555556666777889999999999999999999999999999999999999999999999999998887665


Q ss_pred             HH----H----------------------------------------------HHHHHHHHHHHHHhhcCch-hhHHHHH
Q 030356          110 FS----L----------------------------------------------NYLSLVTLRGLVGIGLGSG-PVCLSWF  138 (179)
Q Consensus       110 ~~----~----------------------------------------------~~~~~~~~~~l~G~~~g~~-~~~~~~~  138 (179)
                      +-    +                                              -+..++++.++.|+|.... +...+|+
T Consensus        87 lPhf~~~~y~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~GiG~~pl~tLG~tYi  166 (539)
T PF03137_consen   87 LPHFLSGPYSYEEASNSNGNSSISSNLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVFILGQLLIGIGATPLYTLGITYI  166 (539)
T ss_dssp             -----------------------------------------------------------------SSS------------
T ss_pred             ccHhhcCCCccccccccccccccccccccccccccccCccccccccccccchHHHHHHHHHHHHHhccccCCccceeeee
Confidence            30    0                                              0134567889999999988 9999999


Q ss_pred             HHhccccchhHHHHHHHHHHHHHHHHHHHHHHHHhccC
Q 030356          139 LEFIPASNRGMWMVVISIFWTLGTIFEAALAWGNILLN  176 (179)
Q Consensus       139 ~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~~~~~  176 (179)
                      -|..++++-+...|++.....+|..+|.++++.+.+.+
T Consensus       167 DDnv~~~~splYiGi~~~~~~lGPa~Gf~lg~~~L~~y  204 (539)
T PF03137_consen  167 DDNVSKKNSPLYIGILYAMSILGPALGFLLGSFCLRIY  204 (539)
T ss_dssp             --------------------------------------
T ss_pred             ccccccccCccchhhhhHHhhccHHHHHHHHHHHHhce
Confidence            99999999999999999999999999999999888654

Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.

>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=98.56  E-value=4e-07  Score=71.26  Aligned_cols=148  Identities=14%  Similarity=0.059  Sum_probs=99.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhcchhcc-cCCCchhHHHHHHHHHHHHHHHHHHHhhhhccccc---------hhHHH
Q 030356           26 LVLIYAGLGLVAEAMEIMILSFIGPAIKSE-WNLSPAQETLLTSVVFAGLLVGSYSWGFISDNYGR---------RKGLL   95 (179)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~d~~G~---------r~~~~   95 (179)
                      ..+..+.+..+.............|.+.+| +|.+..+.|++.++..+...+..++.|.++||.-+         |..-.
T Consensus       258 ~~vwai~~~~f~~~~~~~~l~~y~PtY~~~VL~f~v~~~G~~salP~l~~~~~k~~~g~lsD~l~~~~ls~t~~rkifn~  337 (466)
T KOG2532|consen  258 PPVWAIWISAFGGNWGFYLLLTYLPTYLKEVLGFDVRETGFLSALPFLAMAIVKFVAGQLSDRLTFRILSETTVRKIFNT  337 (466)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCchHhHHHHHHh
Confidence            345566666677666666666666766665 99999999999999999999999999999998865         22233


Q ss_pred             HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhhcCch--hhHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 030356           96 GIAMLASVAGLLSAFSLN-YLSLVTLRGLVGIGLGSG--PVCLSWFLEFIPASNRGMWMVVISIFWTLGTIFEAALAWGN  172 (179)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~G~~~g~~--~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~  172 (179)
                      ++....+++.+.+++.++ .....+..+....+..+.  .....-..+. .+++-+..+++.+....+.+.++|.+.+.+
T Consensus       338 i~~~~~ai~l~~l~~~~~~~~~~a~~~l~~~~~~~g~~~~Gf~~~~~~~-apq~a~~l~g~~~~~~~~~~~~~P~~vg~~  416 (466)
T KOG2532|consen  338 IAFGGPAVFLLVLAFTSDEHRLLAVILLTIAIGLSGFNISGFYKNHQDI-APQHAGFVMGIINFVGALAGFIAPLLVGII  416 (466)
T ss_pred             HHHHHHHHHHHeeeecCCCcchHHHHHHHHHHHHcccchhhhHhhhhhc-cchHHHHHHHHHHHHHHHHHHHHHHheeeE
Confidence            444555555555555542 111111112222222222  2222222333 568889999999999999999999999998


Q ss_pred             hc
Q 030356          173 IL  174 (179)
Q Consensus       173 ~~  174 (179)
                      .+
T Consensus       417 ~~  418 (466)
T KOG2532|consen  417 VT  418 (466)
T ss_pred             eC
Confidence            85

>KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only]

Probab=98.53  E-value=1.7e-06  Score=67.72  Aligned_cols=104  Identities=21%  Similarity=0.204  Sum_probs=84.1

Q ss_pred             HHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCch---hhHHHHHHHhcccc
Q 030356           69 VVFAGLLVGSYSWGFISDNYGRRKGLLGIAMLASVAGLLSAFSLNYLSLVTLRGLVGIGLGSG---PVCLSWFLEFIPAS  145 (179)
Q Consensus        69 ~~~~~~~i~~~~~g~l~d~~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~---~~~~~~~~~~~~~~  145 (179)
                      ...+...+.++..|.++||+|||..+........+..+...+.. ++.+.    +.++..+..   ....+++++....+
T Consensus        70 ~~~~~~~i~s~~iG~lSD~~grk~~L~~~~~~~~l~~~~~~~~~-~~~~~----~~~l~g~~~~~~s~~~a~vadis~~~  144 (463)
T KOG2816|consen   70 TAGLLTLISSPLIGALSDRYGRKVVLLLPLFGTILPALCLLFQG-YWFFL----LLGLSGGFSAIFSVGFAYVADISSEE  144 (463)
T ss_pred             hhHHHHHHHHhhhHHhhhhhhhhhhHHHHHHHHHHhHHHHHHHH-HHHhh----hcccccchhhhhhhhhhheeeccchh
Confidence            44778889999999999999999999999888888777776665 33222    455544332   55678899999999


Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Q 030356          146 NRGMWMVVISIFWTLGTIFEAALAWGNILLNS  177 (179)
Q Consensus       146 ~r~~~~~~~~~~~~~g~~~~~~i~~~~~~~~~  177 (179)
                      +|....++.+.....+..++|.+++.+.+..+
T Consensus       145 ~R~~~~gll~~~~~~~~~~~p~~~~~~~~~~~  176 (463)
T KOG2816|consen  145 ERSSSIGLLSGTFGAGLVIGPALGGYLVKFLG  176 (463)
T ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcC
Confidence            99999999999999999999999999887643

>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]

Probab=98.51  E-value=3e-06  Score=65.89  Aligned_cols=132  Identities=18%  Similarity=0.092  Sum_probs=104.4

Q ss_pred             HhhhcchhcccCCCchhHHHHHHHHHHHHHHHHHHHhhhhcc----ccchhHH-HHHHHHHHHHHHHHHHHH------HH
Q 030356           46 SFIGPAIKSEWNLSPAQETLLTSVVFAGLLVGSYSWGFISDN----YGRRKGL-LGIAMLASVAGLLSAFSL------NY  114 (179)
Q Consensus        46 ~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~d~----~G~r~~~-~~~~~~~~~~~~~~~~~~------~~  114 (179)
                      .+++-++.+..|+++..+|.+..+.=+--++.-|+.|.+.||    +||||+. +.+.+..++...++..++      +.
T Consensus        33 ~yLl~fYTdv~Gis~~~aG~iflv~RiiDAi~DP~~G~i~D~t~~r~GrfRP~lL~g~ip~~i~~~l~F~~p~~~~~~k~  112 (467)
T COG2211          33 LYLLFFYTDVFGLSAALAGTIFLVARIIDAITDPIMGFIVDRTRSRWGRFRPWLLWGAIPFAIVAVLLFITPDFSMTGKL  112 (467)
T ss_pred             HHHHHHHhcccCCcHHHHHHHHHHHHHHHHHhcchheeeecccccccccccHHHHHHhHHHHHHHHHHHcCCCcccCcch
Confidence            344455566699999999999999999999999999999995    7877665 455577777777776655      23


Q ss_pred             HHHHHHHHHHHhhcCch-hhHHHHHHHhcc-ccchhHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Q 030356          115 LSLVTLRGLVGIGLGSG-PVCLSWFLEFIP-ASNRGMWMVVISIFWTLGTIFEAALAWGNILLNS  177 (179)
Q Consensus       115 ~~~~~~~~l~G~~~g~~-~~~~~~~~~~~~-~~~r~~~~~~~~~~~~~g~~~~~~i~~~~~~~~~  177 (179)
                      ...++.-.+.++++... .+..++..|+.+ +++|.+..+.-+....+|..+...+...+++..+
T Consensus       113 ~ya~vtY~l~~l~YT~vniPy~al~~~iT~d~~ER~~l~s~R~~~~~~g~~l~~~~~~plv~~~g  177 (467)
T COG2211         113 IYALVTYMLLGLGYTLVNIPYGALGPEITQDPQERASLTSWRMVFASLGGLLVAVLFPPLVKLFG  177 (467)
T ss_pred             HHHHHHHHHHHHHHHheeCchhhcchhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            45566778889999888 778888888865 5899999999999999998888777777665543

>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon

Probab=98.48  E-value=7.7e-06  Score=62.25  Aligned_cols=123  Identities=15%  Similarity=0.122  Sum_probs=92.7

Q ss_pred             hcccCCCchhHHHHHHHHHHHHHHHHHHHhhhhcccc-----chhHHHHH-HHHHHHHHHHHHHH-----H--------H
Q 030356           53 KSEWNLSPAQETLLTSVVFAGLLVGSYSWGFISDNYG-----RRKGLLGI-AMLASVAGLLSAFS-----L--------N  113 (179)
Q Consensus        53 ~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~d~~G-----~r~~~~~~-~~~~~~~~~~~~~~-----~--------~  113 (179)
                      ..|++++..-.+.+.++..+... .++.+|+.+|+.+     ||..+++. ......+..+..++     .        .
T Consensus         7 IvEL~vpA~lv~~lval~~~~ap-~R~~~G~~SD~~~s~~G~rRtPyI~~G~~~~~~g~~~ap~a~~~l~~~~~~~~~~~   85 (403)
T PF03209_consen    7 IVELGVPAWLVALLVALHYLVAP-LRVWFGHRSDTHPSILGWRRTPYIWGGTLLQAGGLAIAPFALLLLAESGQQSSGPF   85 (403)
T ss_pred             HHHhccHHHHHHHHHHHHHHHHH-HHHHhccccccCcccCcCCchhhhHHHHHHHHHHHHHHHHHHHHHccccccccccc
Confidence            45778887777777777666554 6899999999999     88776654 44444444433321     1        1


Q ss_pred             H---HHHHHHHHHHHhhcCch-hhHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHHHhccC
Q 030356          114 Y---LSLVTLRGLVGIGLGSG-PVCLSWFLEFIPASNRGMWMVVISIFWTLGTIFEAALAWGNILLN  176 (179)
Q Consensus       114 ~---~~~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~~~~~  176 (179)
                      +   ........+.|++.+.. +...+.+.|..|+|+|+++.++.....-+|.+++..+.+.+.+.+
T Consensus        86 ~~g~~~a~l~F~l~G~G~~~s~T~~lALl~D~~~e~~R~~~v~ivw~Mli~G~iv~ai~~g~lL~~~  152 (403)
T PF03209_consen   86 WLGLALAALAFLLYGLGVHASGTSFLALLADLAPEERRPRVVAIVWVMLIVGIIVSAIVFGRLLDPF  152 (403)
T ss_pred             HHHHHHHHHHHHHHHhhHhHhHHHHHHHHHhcCCHhhhhhhHHHHHHHHHHHHHHHHHHHHHHcccc
Confidence            1   23344567888888888 888999999999999999999999999999999999999888754

It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.

>KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only]

Probab=98.45  E-value=4.8e-06  Score=65.17  Aligned_cols=124  Identities=15%  Similarity=0.055  Sum_probs=108.4

Q ss_pred             chhcccCCCchhHHHHHHHHHHHHHHHHHHHh-hhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 030356           51 AIKSEWNLSPAQETLLTSVVFAGLLVGSYSWG-FISDNYGRRKGLLGIAMLASVAGLLSAFSLNYLSLVTLRGLVGIGLG  129 (179)
Q Consensus        51 ~~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g-~l~d~~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~g  129 (179)
                      +....++.++.+.+...+.......+++.+.. .+...+|-|+.+..++..-.+...+.+++.+.+.++....+..+...
T Consensus       267 yl~~~f~w~~~~~s~~~~~~~~~~~i~~l~~~~~l~~~l~~~~~i~lGl~~~~~~~~~~af~~~~w~~~~~~v~~~~~~~  346 (463)
T KOG2816|consen  267 YLKAKFGWNKKEFSDLLSLVSILGIISQLLLLPLLSSILGEKRLISLGLLSEFLQLLLFAFATETWMMFAAGVVVALAGI  346 (463)
T ss_pred             EEeeecCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhHHHHHHHHHHHHHHHhccchhhhHHHHHHHhhcc
Confidence            34456899999999888888888888888777 77888999999999999999999999999999998888887777665


Q ss_pred             chhhHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 030356          130 SGPVCLSWFLEFIPASNRGMWMVVISIFWTLGTIFEAALAWGNIL  174 (179)
Q Consensus       130 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~~~  174 (179)
                      ..+...+.++....++++|+.+++......+..+++|.+-+.+..
T Consensus       347 ~~pa~~s~~s~~v~~~e~g~v~~~is~i~~l~~~~~~~~~~~i~~  391 (463)
T KOG2816|consen  347 VFPAIRAFASILVSPEEQGKVFGIISGIEGLSGVVSPALYGNIFA  391 (463)
T ss_pred             hhHHHHhHHHhhcccccccchhhHHHHHHHHhhhhhHHHHHHHHH
Confidence            558889999999999999999999999999999999988877654

>KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism]

Probab=98.43  E-value=3.7e-07  Score=69.94  Aligned_cols=140  Identities=14%  Similarity=0.095  Sum_probs=102.6

Q ss_pred             HHHHHHHHHHHHHHHhhhcchhcccCCCchhHHHHHHHHHHHHHHHHHHHhhhhc----cccchhHHHHHH-HHHHHHHH
Q 030356           32 GLGLVAEAMEIMILSFIGPAIKSEWNLSPAQETLLTSVVFAGLLVGSYSWGFISD----NYGRRKGLLGIA-MLASVAGL  106 (179)
Q Consensus        32 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~d----~~G~r~~~~~~~-~~~~~~~~  106 (179)
                      ....+..-+.+..-..+.|++.++.|++..-.+.+-.+.-+...+.+|+.|..+|    |+||||.++... +...++.+
T Consensus        38 ~~ia~Gvqf~wA~elsy~tPyl~~lGvphk~~S~iw~~gPi~G~~vQP~vG~~SDrc~sr~GRRRPfI~~~s~~i~~~l~  117 (498)
T KOG0637|consen   38 ASIAAGVQFGWALELSYLTPYLQSLGVPHKWSSIIWLCGPLSGLLVQPLVGSASDRCTSRYGRRRPFILAGSLLIAVSLF  117 (498)
T ss_pred             HHHHHHHHHHHHHHhccccHHHHHcCCCcccccccccccccccceecccccccccccccccccccchHHHhhHHHHHHHh
Confidence            3333444445555556667777889999988888888888888999999999999    499999887664 44455556


Q ss_pred             HHHHHHHH-----------------HHHHHHHHHHHhhcCch-hhHHHHHHHhccccchhH-HHHHHHHHHHHHHHHHHH
Q 030356          107 LSAFSLNY-----------------LSLVTLRGLVGIGLGSG-PVCLSWFLEFIPASNRGM-WMVVISIFWTLGTIFEAA  167 (179)
Q Consensus       107 ~~~~~~~~-----------------~~~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~r~~-~~~~~~~~~~~g~~~~~~  167 (179)
                      ++.+++++                 ..+++...+.-+..... .++-+++.|....+++.+ +++.+....++|+.++..
T Consensus       118 Lig~aaDig~~lgd~~~~~~~~rai~~~~lg~~LLD~A~n~~qgp~ra~L~Dl~~~d~~~~~Ans~f~~f~avGnvLGY~  197 (498)
T KOG0637|consen  118 LIGYAADIGLLLGDNERKPVKPRAIVLFILGFWLLDVANNTLQGPCRALLADLARGDAKKTRANSVFSFFMAVGNVLGYA  197 (498)
T ss_pred             hhhhHhhhhHHhcCCcccccchHHHHHHHHHhHHHHhhhhhhhhhHHHHHHHhccChhhhhccchhHHHHHHhcceeeee
Confidence            66665533                 23334444445555555 778899999988877777 999999999999999887


Q ss_pred             HHHH
Q 030356          168 LAWG  171 (179)
Q Consensus       168 i~~~  171 (179)
                      ++.+
T Consensus       198 ~g~y  201 (498)
T KOG0637|consen  198 LGSY  201 (498)
T ss_pred             cccc
Confidence            7753

>KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=98.39  E-value=7.3e-06  Score=61.82  Aligned_cols=130  Identities=18%  Similarity=0.034  Sum_probs=106.2

Q ss_pred             HHhhhcchh-cccCCCchhHHHHHHHHHHHHHHHHHHHhhhhcccc--chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030356           45 LSFIGPAIK-SEWNLSPAQETLLTSVVFAGLLVGSYSWGFISDNYG--RRKGLLGIAMLASVAGLLSAFSLNYLSLVTLR  121 (179)
Q Consensus        45 ~~~~~~~~~-~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~d~~G--~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  121 (179)
                      .....+.+. +.+|.++.|.|.+.+...+...+.+....+..||..  .+-.+..+..+.....++...++....++...
T Consensus       280 ~~~t~~~l~~~rfg~ss~~~G~vl~~tGl~m~~~ql~~~~~l~~~~~~~~a~l~~~l~~~vP~~llls~~~~~~~l~~~s  359 (451)
T KOG2615|consen  280 LENTVLFLTHGRFGYSSMQQGKVLSTTGLLMLVIQLALVPILPRYKGNIKAVLLFSLLLIVPAFLLLSLARTPVVLYLGS  359 (451)
T ss_pred             HHhhHHHhhcCccCCChhhheeeeehhhHHHHHHHHhccccccccccchhhHHHHHHHHHHHHHHHHhccccchhhhHHH
Confidence            334444453 458999999999999999999999999999999887  66677777777666666777677767777777


Q ss_pred             HHHHhhcCch-hhHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 030356          122 GLVGIGLGSG-PVCLSWFLEFIPASNRGMWMVVISIFWTLGTIFEAALAWGNIL  174 (179)
Q Consensus       122 ~l~G~~~g~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~~~  174 (179)
                      .+..+..+.. +....++....|+++||..+|+......++-.+||+++|.+..
T Consensus       360 ~l~sf~~A~~vt~Lt~Lv~~~~~~~qrG~~~Gi~~Sl~alaRaiGPlv~g~i~~  413 (451)
T KOG2615|consen  360 TLKSFSTASVVTCLTSLVHKYGPQSQRGTLNGIFRSLGALARAIGPLVSGVIFS  413 (451)
T ss_pred             HHHHHHHHHhhHHHHHHHHhcCCcccchHHHHHHHHHHHHHHHhhhhhhheeEE
Confidence            7777777766 7778888999999999999999999999999999999987654

>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters

Probab=98.30  E-value=3.3e-10  Score=88.16  Aligned_cols=132  Identities=18%  Similarity=0.148  Sum_probs=87.5

Q ss_pred             HHHHhhhcchhcccCCCchhHHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHHHHH--H---HHH----
Q 030356           43 MILSFIGPAIKSEWNLSPAQETLLTSVVFAGLLVGSYSWGFISDNYGRRKGLLGIAMLASVAGLLSA--F---SLN----  113 (179)
Q Consensus        43 ~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~d~~G~r~~~~~~~~~~~~~~~~~~--~---~~~----  113 (179)
                      .....+.+.+.++.+.+..  -.......+...++.+....+.||+|||+.++.+....++..+.++  .   .++    
T Consensus       270 ~~~~~~~~~i~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~GRr~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~  347 (451)
T PF00083_consen  270 NFIFYYSPSIFENAGISNS--FLATLILGLVNFLGTLLAIFLIDRFGRRKLLIIGLLLMAICSLILGIIFFLGVSSSSWW  347 (451)
T ss_pred             ccccccccccccccccccc--ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            4445556777777777666  2333344455566777777999999999999999888777776654  1   111    


Q ss_pred             HHHHHHHHHHHHhhcC--chhhHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHHHhccC
Q 030356          114 YLSLVTLRGLVGIGLG--SGPVCLSWFLEFIPASNRGMWMVVISIFWTLGTIFEAALAWGNILLN  176 (179)
Q Consensus       114 ~~~~~~~~~l~G~~~g--~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~~~~~  176 (179)
                      -...++...+...+.+  ..+....+..|.+|.+.|+++.++......+++.++|.+...+.+..
T Consensus       348 ~~~~i~~~~l~~~~~~~g~~~~~~~~~~ElfPt~~R~~~~~~~~~~~~i~~~i~~~~~~~~~~~~  412 (451)
T PF00083_consen  348 SILSIVFLALFFAFFSLGWGPLPWIYTAELFPTKVRSTGIGLSYAVGRIGGFIIPFLFPYLFNNL  412 (451)
T ss_pred             ccccceeeeeccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            1111222222222222  22556678899999999999999988888888888887766665543

Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane

>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX)

Probab=98.30  E-value=2.6e-05  Score=59.89  Aligned_cols=130  Identities=12%  Similarity=0.089  Sum_probs=110.9

Q ss_pred             Hhhhcchhcc-cCCCchhHH-HHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030356           46 SFIGPAIKSE-WNLSPAQET-LLTSVVFAGLLVGSYSWGFISDNYGRRKGLLGIAMLASVAGLLSAFSLNYLSLVTLRGL  123 (179)
Q Consensus        46 ~~~~~~~~~~-~~~s~~~~~-~~~~~~~~~~~i~~~~~g~l~d~~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  123 (179)
                      ++..|++.+. .|++++|.. -+.-+..-.+....++...++|..+.|++++++.+...+...+..+.++...+.+..++
T Consensus        24 Pfl~~yL~~~~kn~T~~qv~~~i~Pv~tYSyl~~l~~vflltd~l~Ykpviil~~~~~i~t~~lll~~~sv~~mq~~q~~  103 (412)
T PF01770_consen   24 PFLTPYLTGPDKNFTEEQVNNEIYPVWTYSYLAFLLPVFLLTDYLRYKPVIILQALSYIITWLLLLFGTSVLAMQLMQFF  103 (412)
T ss_pred             ccchHHHcCCccCCCHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHCcHHHHHHHHHH
Confidence            4555667665 788888864 67777788888899999999999999999999999999999999999999999999999


Q ss_pred             HHhhcCchhhHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 030356          124 VGIGLGSGPVCLSWFLEFIPASNRGMWMVVISIFWTLGTIFEAALAWGNILL  175 (179)
Q Consensus       124 ~G~~~g~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~~~~  175 (179)
                      .|+..+...+.++++=...|+++--++.+....+.-+|..++.+++-.++..
T Consensus       104 yg~~~a~evay~sYiys~v~~~~yq~vts~~raa~l~g~~~s~~lgQllvs~  155 (412)
T PF01770_consen  104 YGLATAAEVAYYSYIYSVVDKEHYQKVTSYTRAATLVGRFISSLLGQLLVSF  155 (412)
T ss_pred             HHHHHHHHHHHHHHheeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            9999877677888887777888888888888888888888888888877764

Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane

>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins

Probab=98.28  E-value=1.9e-05  Score=63.46  Aligned_cols=146  Identities=14%  Similarity=0.066  Sum_probs=100.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhcchhc-ccCCCc---hhHHHHHHHHHHHHHHHHHHHhhhhccccchhHH-HHHHHHHH
Q 030356           28 LIYAGLGLVAEAMEIMILSFIGPAIKS-EWNLSP---AQETLLTSVVFAGLLVGSYSWGFISDNYGRRKGL-LGIAMLAS  102 (179)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~s~---~~~~~~~~~~~~~~~i~~~~~g~l~d~~G~r~~~-~~~~~~~~  102 (179)
                      +....+..++.+..++....+.|.... -++.|+   .+.++......++..+++.+.|.+..|++|-|.. +.+..++.
T Consensus       312 ~~~~lvi~fi~G~~~~s~~~l~p~~~~~vf~~d~~~~~~~~~~s~~~~fg~~~g~~i~g~l~~~ir~~Kw~li~~~~~~t  391 (599)
T PF06609_consen  312 FAALLVISFISGMNFFSVNILWPQQVVNVFGSDPISITEIGWISSPVGFGSCAGAVILGLLFSKIRHIKWQLIFGSVLMT  391 (599)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCcccceeehhhhhHHHHHHHHHHHHHHHHHHccchhHHHHHHHHHHH
Confidence            333334444555545544444444332 344444   3678888899999999999999999888766554 56666665


Q ss_pred             HHHHHHHHH--HHHHHHHHHHHHHHhhcCch-hhHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 030356          103 VAGLLSAFS--LNYLSLVTLRGLVGIGLGSG-PVCLSWFLEFIPASNRGMWMVVISIFWTLGTIFEAALAWGNI  173 (179)
Q Consensus       103 ~~~~~~~~~--~~~~~~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~~  173 (179)
                      ++.-.++..  +|....+...++.|++.|.. .+......-..|+++-+.+.++......+|+.++.-+-.-+.
T Consensus       392 a~~Gama~~~~~n~~~~i~~~~l~g~giG~~~~~~~~~~ql~~p~~~ig~a~gL~~s~R~~GGsIg~aIy~~I~  465 (599)
T PF06609_consen  392 AFCGAMAAVRPDNKNAAIAFLVLAGFGIGGILVPAIVIAQLIVPDEDIGTATGLTGSIRSIGGSIGYAIYNAIF  465 (599)
T ss_pred             HHHHHHHHccCCCcchHHHHHHHHHHhHHHHHHHHHHeeEeeeCchHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence            554444432  34455567788899988887 666666677889999999999999999999999877665544

Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].

>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins

Probab=98.27  E-value=2.5e-05  Score=60.93  Aligned_cols=131  Identities=21%  Similarity=0.169  Sum_probs=96.7

Q ss_pred             HhhhcchhcccCCCchhHHHHHHHHHHHHHHHHHHHhhhhcccc-----chhHHHHHHHHHHHHHHHHHHHH----HHHH
Q 030356           46 SFIGPAIKSEWNLSPAQETLLTSVVFAGLLVGSYSWGFISDNYG-----RRKGLLGIAMLASVAGLLSAFSL----NYLS  116 (179)
Q Consensus        46 ~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~d~~G-----~r~~~~~~~~~~~~~~~~~~~~~----~~~~  116 (179)
                      ....+++++++|+++++.....++..+... ..++.|.++|.+.     ||+.++++.++.+++...++..+    +...
T Consensus        10 ~~~~~~l~~~l~ls~~~~~~~~~~~~lPw~-~Kp~~g~lsD~~pi~G~rr~~Y~~i~~~~~~~~~~~~~~~~~~~~s~~~   88 (433)
T PF03092_consen   10 LAIYPFLKDDLGLSPAQLQRLSSLASLPWS-IKPLYGLLSDSFPIFGYRRKPYMIIGWLLGAVSALVLALLPASESSAAI   88 (433)
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHhCchH-HhhhHHhhcccccccCCcchHHHHHHHHHHHHHHHHHHhcccccchhhh
Confidence            344577888999999999988888888765 4678899999863     55556666666655555444422    4555


Q ss_pred             HHHHHHHHHhhcCch-hhHHHHHHHhcc--ccchhHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Q 030356          117 LVTLRGLVGIGLGSG-PVCLSWFLEFIP--ASNRGMWMVVISIFWTLGTIFEAALAWGNILLNS  177 (179)
Q Consensus       117 ~~~~~~l~G~~~g~~-~~~~~~~~~~~~--~~~r~~~~~~~~~~~~~g~~~~~~i~~~~~~~~~  177 (179)
                      ..+..++..++.... ...-+.+.|...  ++.|+...+.......+|+.++..+++.+.+..+
T Consensus        89 ~~~~l~la~~g~a~~DV~aDa~vvE~~~~~p~~~g~lqS~~~~~~~~G~lv~~~l~G~l~~~~~  152 (433)
T PF03092_consen   89 AVVLLFLASFGYAFADVAADALVVELARREPESRGDLQSFVWGVRSVGSLVGSLLSGPLLDSFG  152 (433)
T ss_pred             HHHHHHHHHHHHHHHHHhhhHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhcCC
Confidence            556667777777777 777777777653  2337888999999999999999999999887654

Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).

>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=98.19  E-value=7.8e-06  Score=64.49  Aligned_cols=141  Identities=16%  Similarity=0.059  Sum_probs=88.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhcchhcc-cCCCchhHHHHHHHHHHHHHHHHHHHhhhhcc----ccchhHHHHHHHHH
Q 030356           27 VLIYAGLGLVAEAMEIMILSFIGPAIKSE-WNLSPAQETLLTSVVFAGLLVGSYSWGFISDN----YGRRKGLLGIAMLA  101 (179)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~d~----~G~r~~~~~~~~~~  101 (179)
                      .+...+++.++.....+...+.+|.+.++ .|.|+.+.+.+...+.++.+++.++.|.++||    ..+|........+.
T Consensus       274 ~vw~~~l~~~~~~lv~~~~~~~lpl~l~~~~~~s~~~a~~ls~~~~~~g~v~~i~ag~lsdr~~~~~~~~~~~~~~~~~~  353 (495)
T KOG2533|consen  274 GVWPFSLCYFFLKLVNYGFSYWLPLYLKSNGGYSELQANLLSTPYDVGGIVGLILAGYLSDRLKTIFARRLLFIVFLCLY  353 (495)
T ss_pred             hHHHHHHHHHHHhhccccHHHHHHHHHHcCCCcChHHhccccchHHhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence            34555666677777777777888888877 66899999999999999999999999999999    66666666555554


Q ss_pred             HHHH-HHHHHHHHHHHHHHHHHHHHhhcCch-hhHHHHHHHhccccch-hHHHHHHHHHHHHHHHHHHH
Q 030356          102 SVAG-LLSAFSLNYLSLVTLRGLVGIGLGSG-PVCLSWFLEFIPASNR-GMWMVVISIFWTLGTIFEAA  167 (179)
Q Consensus       102 ~~~~-~~~~~~~~~~~~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~r-~~~~~~~~~~~~~g~~~~~~  167 (179)
                      .+.. +.+....+........+....+.... +....+.++....+.| -...+.+..+.+.++.++|.
T Consensus       354 ~~~g~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~s~~~~g~~k~~~~~~~~i~~~~s~~~~~~~  422 (495)
T KOG2533|consen  354 AIIGAISLLAAAVLPGAYGAFLIGPYGLIATAIIALSWTSANLAGNTKALTTVSAIIDGTGSAGAISGQ  422 (495)
T ss_pred             HHHHHHHHHhhccchHHhHHHHhcchhhHHHHHHHHhhccccccchHHhHHHHhhhhcchhHHHHhhhh
Confidence            4333 33333322222222222222223333 4555666665554444 44444566666665555544

>KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism]

Probab=98.18  E-value=1.1e-06  Score=67.60  Aligned_cols=149  Identities=15%  Similarity=0.008  Sum_probs=98.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhcchhcccCCCchhHHH--------HHHHHHH-HHHHHHHHHhhhhccccchhHHHH
Q 030356           26 LVLIYAGLGLVAEAMEIMILSFIGPAIKSEWNLSPAQETL--------LTSVVFA-GLLVGSYSWGFISDNYGRRKGLLG   96 (179)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~--------~~~~~~~-~~~i~~~~~g~l~d~~G~r~~~~~   96 (179)
                      +.++..+..++..-...+........+.++.+..+.+...        ...+... +...+-++...+.|++|||+..+.
T Consensus       304 ~~Llgt~~~WFllDiafy~~nL~~s~I~~~ig~~~~~~~~~~~~~vA~~~~iia~~~~vPGyw~tv~~id~iGRk~iq~~  383 (538)
T KOG0252|consen  304 KHLLGTAGTWFLLDIAFYGQNLFQSVIFSAIGVIPSANTYHELFKVAEGNLIIAVCSTVPGYWFTVYFIDIIGRKYIQLM  383 (538)
T ss_pred             HHHHHHHHHHHhhhhhhhccccHHHHHHHhhccCCCcchHHHHHHHHHHHHHHHHHccCCceeEEEEEeehhhhHHHHHh
Confidence            4445555555655555555556666666666654443322        2222222 223366778889999999999999


Q ss_pred             HHHHHHHHHHHHHHHHH----HHHHHHHHHHHHhhcCch--hhHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHH
Q 030356           97 IAMLASVAGLLSAFSLN----YLSLVTLRGLVGIGLGSG--PVCLSWFLEFIPASNRGMWMVVISIFWTLGTIFEAALAW  170 (179)
Q Consensus        97 ~~~~~~~~~~~~~~~~~----~~~~~~~~~l~G~~~g~~--~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~  170 (179)
                      +.+++.+..+.++...|    -..+.+...+..+.....  .....+-+|.+|.+.|+++-++.....-.|++++...-.
T Consensus       384 GF~~~~i~~~~~~~~y~~~~~~~Gf~v~y~l~~ff~NFGPn~ttfivpaE~FParvR~t~hGIsAA~GK~GAivg~~~F~  463 (538)
T KOG0252|consen  384 GFFIMTIFFFVIAGPYNQLENTIGFVVLYSLTFFFGNFGPNATTFIVPAEIFPARVRSTCHGISAASGKAGAIVGAFGFL  463 (538)
T ss_pred             hHHHHHHHHHHHcCCcccccccCceeehHHHHHHHHhcCCCceeEEeehhhchHHHhhhhhhHHHHhccchHHHHHHHhh
Confidence            99999999888876554    122233323333322222  334456689999999999999999999999999988888


Q ss_pred             HHhc
Q 030356          171 GNIL  174 (179)
Q Consensus       171 ~~~~  174 (179)
                      ++.+
T Consensus       464 ~~t~  467 (538)
T KOG0252|consen  464 YLTD  467 (538)
T ss_pred             Hhhh
Confidence            8776

>PRK15462 dipeptide/tripeptide permease D; Provisional

Probab=98.14  E-value=0.00033  Score=55.55  Aligned_cols=111  Identities=11%  Similarity=0.036  Sum_probs=82.7

Q ss_pred             hHHHHHHHHHHHHHHHHHHHhhhhccccc--hh-----HHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHH
Q 030356           62 QETLLTSVVFAGLLVGSYSWGFISDNYGR--RK-----GLLGIAMLASVAGLLSAFS---------LNYLSLVTLRGLVG  125 (179)
Q Consensus        62 ~~~~~~~~~~~~~~i~~~~~g~l~d~~G~--r~-----~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~l~G  125 (179)
                      ..++..++..+..++.+|+.+++=.|.++  |.     =+.+++++.+++.+.+...         .+..+++...++.+
T Consensus       309 p~~~~qslNp~~ii~l~P~~a~lw~~l~~~~~~~s~~~Kfa~g~~~~g~~f~~l~~~~~~~~~~~~~s~~wl~~~~~~~t  388 (493)
T PRK15462        309 PTAMFQSINAFAVMLCGVFLAWVVKESVAGNRTVRIWGKFALGLGLMSAGFCILTLSARWSAMYGHSSLPLMVLGLAVMG  388 (493)
T ss_pred             CHHHHHhHhHHHHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcCHHHHHHHHHHHH
Confidence            36788888888888888888887666532  21     1566777777776555431         14566777888999


Q ss_pred             hhcCch-hhHHHHHHHhccccchhHHHHHHHHH-HHHHHHHHHHHHHHH
Q 030356          126 IGLGSG-PVCLSWFLEFIPASNRGMWMVVISIF-WTLGTIFEAALAWGN  172 (179)
Q Consensus       126 ~~~g~~-~~~~~~~~~~~~~~~r~~~~~~~~~~-~~~g~~~~~~i~~~~  172 (179)
                      +|.-.. |+..+.+++..|++.||+.++.+... ..+|..++..++...
T Consensus       389 ~gEl~~sPvgls~~~~laP~~~~g~~mg~w~l~~~~~~~~~~g~~~~~~  437 (493)
T PRK15462        389 FAELFIDPVAMSQITRIEIPGVTGVLTGIYMLLSGAIANYLAGVIADQT  437 (493)
T ss_pred             HHHHHHChHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            999888 99999999999999999999998764 367777766666554

>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]

Probab=98.09  E-value=0.00027  Score=56.41  Aligned_cols=102  Identities=24%  Similarity=0.201  Sum_probs=79.5

Q ss_pred             HHHHHHHHHhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHhhcCch-hhHHHHHHHhccccchh
Q 030356           73 GLLVGSYSWGFISDNYGRRKGLLGIAMLASVAGLLSAFSLNYLS---LVTLRGLVGIGLGSG-PVCLSWFLEFIPASNRG  148 (179)
Q Consensus        73 ~~~i~~~~~g~l~d~~G~r~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~r~  148 (179)
                      .........+...|+.|||.....+..+..++.+..+.......   ..+...+...+.+.. .....+..|.+|+..|.
T Consensus       362 ~~~p~~~~~~~~~~~~gR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~pt~~r~  441 (521)
T KOG0255|consen  362 VELPAYFRNGLLLPEFGRRPPLFLSLFLAGIGLLLFGWLPDDLGGWLHWILPLLGKFFIGSAFNLIFLYSAELIPTVVRN  441 (521)
T ss_pred             HHhhHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHH
Confidence            55555666689999999999999999999999988887654332   334444444444444 55688889999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhc
Q 030356          149 MWMVVISIFWTLGTIFEAALAWGNIL  174 (179)
Q Consensus       149 ~~~~~~~~~~~~g~~~~~~i~~~~~~  174 (179)
                      .+.+..+....+|.+++|.+......
T Consensus       442 ~~~~~~~~~~~~~~i~ap~~~~~~~~  467 (521)
T KOG0255|consen  442 TAVGAISAAARLGSILAPLFPLLLRQ  467 (521)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            99999999999999999998865543

>KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism]

Probab=98.07  E-value=7.9e-06  Score=66.52  Aligned_cols=151  Identities=17%  Similarity=0.141  Sum_probs=128.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhcchhcccCCCchhHHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHH
Q 030356           27 VLIYAGLGLVAEAMEIMILSFIGPAIKSEWNLSPAQETLLTSVVFAGLLVGSYSWGFISDNYGRRKGLLGIAMLASVAGL  106 (179)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~d~~G~r~~~~~~~~~~~~~~~  106 (179)
                      .+.++++..+.+.+........+..+.+.++++.++.|++.+.+-++..+...+..+..-|..|-+.+-.+.++++++.+
T Consensus        98 fl~~l~~~~~~q~l~~~y~~s~IttiErRF~i~Ss~sG~I~s~~dig~~l~i~fVsYfG~r~HrPr~Ig~G~~~m~lgsl  177 (735)
T KOG3626|consen   98 FLVLLSLAAFAQGLYVGYFNSVITTIERRFKISSSQSGLIASSYDIGNLLLIIFVSYFGSRGHRPRWIGIGLVLMGLGSL  177 (735)
T ss_pred             HHHHHHHHHHHHHhhhhhhhhhhhhhhhhcCCCCCcceeEeeecccchhhhhHhHHHhccccCccceeeechhHHHHHHH
Confidence            44455566667777666667777888888999999999999999999999999999999999999999999999999988


Q ss_pred             HHHHHH-----------H----------------------------------------HH-HHHHHHHHHHhhcCch-hh
Q 030356          107 LSAFSL-----------N----------------------------------------YL-SLVTLRGLVGIGLGSG-PV  133 (179)
Q Consensus       107 ~~~~~~-----------~----------------------------------------~~-~~~~~~~l~G~~~g~~-~~  133 (179)
                      ++++-+           +                                        .+ .++++.++.|+|.... +.
T Consensus       178 l~alPHf~~~~y~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llff~~q~l~GIG~Tpi~tl  257 (735)
T KOG3626|consen  178 LFALPHFFSGPYEYELEVIKQSVENPSSSLSFCCCNKSTNLCRPSPENSKREKESTSYPFLLFFLGQLLLGIGATPIFTL  257 (735)
T ss_pred             HHhChHHhcCcchhhhhhhhccccCCccccchhhccCCccccCCCCCcccccccCCchhHHHHHHHHHHhhcCCCCCccC
Confidence            776410           0                                        12 4556789999999988 89


Q ss_pred             HHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Q 030356          134 CLSWFLEFIPASNRGMWMVVISIFWTLGTIFEAALAWGNILLNS  177 (179)
Q Consensus       134 ~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~~~~~~  177 (179)
                      ..+++-|...+++-....++......+|.++|-++++++.+.+.
T Consensus       258 GisYiDDnvk~~~SplYlgi~~~~~~lGPaiGfllgS~~l~lYv  301 (735)
T KOG3626|consen  258 GISYIDDNVKKKNSPLYLGILYSMAILGPAIGFLLGSFCLKLYV  301 (735)
T ss_pred             CCccccccccccCCcHHHHHHHHHHHhhhHHHHHHHHHHHHeee
Confidence            99999999999999999999999999999999999999887653

>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age

Probab=98.07  E-value=0.00066  Score=52.23  Aligned_cols=112  Identities=16%  Similarity=0.094  Sum_probs=81.4

Q ss_pred             CchhHHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHH--HHHH---HHHHHHHHHHHHHHHHHHHhhcCch-h
Q 030356           59 SPAQETLLTSVVFAGLLVGSYSWGFISDNYGRRKGLLGIAMLAS--VAGL---LSAFSLNYLSLVTLRGLVGIGLGSG-P  132 (179)
Q Consensus        59 s~~~~~~~~~~~~~~~~i~~~~~g~l~d~~G~r~~~~~~~~~~~--~~~~---~~~~~~~~~~~~~~~~l~G~~~g~~-~  132 (179)
                      ..++-.+...++.+|..+++--...+  |+  |+..+.+.+-..  +..+   ..-+.++.+.+++..+..|+..|.. .
T Consensus       279 ~r~~Y~~Y~~~YQ~GVFISRSS~~~~--ri--r~lwils~LQ~~nl~~~~l~s~~~fipsi~ivf~lif~eGLlGGa~YV  354 (402)
T PF02487_consen  279 PRDQYRWYQLLYQLGVFISRSSLPFF--RI--RRLWILSLLQVINLVFLLLQSWYRFIPSIWIVFVLIFYEGLLGGASYV  354 (402)
T ss_pred             HHHHHHHHHHHHHHHHhhhhcceeee--eh--hhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhHHHH
Confidence            45567888888888888877654332  33  344333332222  2222   2234678888888899999988888 7


Q ss_pred             hHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 030356          133 VCLSWFLEFIPASNRGMWMVVISIFWTLGTIFEAALAWGNIL  174 (179)
Q Consensus       133 ~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~~~  174 (179)
                      .....+.|..|+++|..+++....+-++|..++.+++-.+-.
T Consensus       355 NtF~~I~~~~~~~~REFslg~vsvsds~GI~lAgll~l~le~  396 (402)
T PF02487_consen  355 NTFYRISEEVPPEDREFSLGAVSVSDSLGILLAGLLGLPLEP  396 (402)
T ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence            788888888999999999999999999999999888876643

The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane

>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions

Probab=98.06  E-value=0.00055  Score=54.17  Aligned_cols=112  Identities=17%  Similarity=0.098  Sum_probs=81.2

Q ss_pred             hHHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHH-HHHHHHHHHHHHHH-H-HHHHHHHHHHHHHhhcCch-hhHHHH
Q 030356           62 QETLLTSVVFAGLLVGSYSWGFISDNYGRRKGLLGI-AMLASVAGLLSAFS-L-NYLSLVTLRGLVGIGLGSG-PVCLSW  137 (179)
Q Consensus        62 ~~~~~~~~~~~~~~i~~~~~g~l~d~~G~r~~~~~~-~~~~~~~~~~~~~~-~-~~~~~~~~~~l~G~~~g~~-~~~~~~  137 (179)
                      -.++..++..+..++..|+.|.++|+-|+||.++.. ..+..+....+.+. + ++....+..++.-++.+.. ....++
T Consensus        71 ~~~~~~sis~l~~all~P~lGa~aD~~~~Rk~~l~~~~~~~~~~~~~l~~v~~~~~~~~~~l~iia~v~~~~~~vfyna~  150 (477)
T PF11700_consen   71 LWLYANSISGLLQALLAPFLGAIADYGGRRKRFLLIFTLLGVLATALLWFVSPGQWWLALVLFIIANVGYEASNVFYNAY  150 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHcccccchHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            346788899999999999999999999988766655 44455555655553 3 3444444445555666666 677899


Q ss_pred             HHHhccccch--------------------------hHHHHHHHHHHHHHHHHHHHHHHHHh
Q 030356          138 FLEFIPASNR--------------------------GMWMVVISIFWTLGTIFEAALAWGNI  173 (179)
Q Consensus       138 ~~~~~~~~~r--------------------------~~~~~~~~~~~~~g~~~~~~i~~~~~  173 (179)
                      +.|..+++.+                          ++..+.-.....+|+.+.-.+.-.+.
T Consensus       151 LP~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vS~~G~a~Gy~G~~v~l~i~l~~~  212 (477)
T PF11700_consen  151 LPDLARPEPRVRAAREPSANGNISDSEYEAVDSLTRGRVSGLGWALGYIGGLVALLISLLLV  212 (477)
T ss_pred             hHhhcCCChhhhhhhhhhccCCCChhhhhhHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999888                          88888877777788777666655544

Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.

>PTZ00207 hypothetical protein; Provisional

Probab=98.01  E-value=8.2e-05  Score=60.04  Aligned_cols=145  Identities=12%  Similarity=-0.030  Sum_probs=95.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhcchhccc-CCCc-hhHHH-HHHHHHHHHHHHHHHHhhhhcc---------ccchhHHH
Q 030356           28 LIYAGLGLVAEAMEIMILSFIGPAIKSEW-NLSP-AQETL-LTSVVFAGLLVGSYSWGFISDN---------YGRRKGLL   95 (179)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~s~-~~~~~-~~~~~~~~~~i~~~~~g~l~d~---------~G~r~~~~   95 (179)
                      ++++++.+++....-.....-.-++.+.+ |.+. ++... +.++.++++.+|.+..|.+...         +.|--.+.
T Consensus       355 ~Wll~~~~~cg~g~gl~~~~N~~qI~~sl~g~~~~~~~~~~~vsL~si~~~~GRl~~g~~~~~~~~~~~~~r~prt~~l~  434 (591)
T PTZ00207        355 LWCLLWSIFCCVGAHFVIIFNARFIYTALAGEAPDDALNTLLTVLNGVGSAVGRLCMSYFEIWSQKRRAEDRVPITIALF  434 (591)
T ss_pred             HHHHHHHHHHhhCchheeeecHHHHHHHhcCCCCCccceeeehhhhhHHHHhhHHHHHHHHHHHHhhccccccchhHHHH
Confidence            34444444444433333344445566666 5522 32222 7899999999999999988722         22222233


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCch-hhHHHHHHHhccccchhHHHHHHHHHHHHHHHHH-HHHHHHHh
Q 030356           96 GIAMLASVAGLLSAFSLNYLSLVTLRGLVGIGLGSG-PVCLSWFLEFIPASNRGMWMVVISIFWTLGTIFE-AALAWGNI  173 (179)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~-~~i~~~~~  173 (179)
                      +..+ +.++.+++++.-+...+++.-++.|++.|.. +.....++|.|. |+-|+-..+...+..+|..+- -.+.+.+-
T Consensus       435 ~~~~-~~~~~lll~~~~p~~~L~~~~~lvg~~~G~~~~~~~~i~selFg-k~~g~~yN~~~~a~pigs~~~n~~l~G~~Y  512 (591)
T PTZ00207        435 IPSV-CIITMLTLFLTLPKAALPLPYFIAAFANGFMAATIALVTRTIFA-KDPAKHYNFCFLGSVLSAIFLNRLLYGEWY  512 (591)
T ss_pred             HHHH-HHHHHHHHHHHCCccHhHHHHHHHHHHhhHhHHHHHHHHHHHhc-cchHHHhhHHhHHHHHHHHHHHHHHHHHHH
Confidence            3333 5555555555433357899999999999999 899999999999 888888888888888887664 55666655


Q ss_pred             c
Q 030356          174 L  174 (179)
Q Consensus       174 ~  174 (179)
                      |
T Consensus       513 d  513 (591)
T PTZ00207        513 T  513 (591)
T ss_pred             H
Confidence            4

>TIGR00769 AAA ADP/ATP carrier protein family

Probab=97.91  E-value=0.003  Score=49.86  Aligned_cols=141  Identities=11%  Similarity=-0.012  Sum_probs=94.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhcchhcccCC-----CchhHHHHHHHHHHHHHHH-HHHHhhhhccccchhHHHHHHHH
Q 030356           27 VLIYAGLGLVAEAMEIMILSFIGPAIKSEWNL-----SPAQETLLTSVVFAGLLVG-SYSWGFISDNYGRRKGLLGIAML  100 (179)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----s~~~~~~~~~~~~~~~~i~-~~~~g~l~d~~G~r~~~~~~~~~  100 (179)
                      .+....+.+++....++..-.    +++++..     +.+...++-+...+...+. .++.+++++|++|++.+-.....
T Consensus         8 k~~~~~l~fF~il~~Y~iLR~----lKD~lvv~~~~~gae~i~fLk~~~~lp~~~~~~~ly~~l~~~~~~~~lf~~~~~~   83 (472)
T TIGR00769         8 KFLPLFLMFFCILFNYTILRD----TKDTLVVTAKGSGAEIIPFLKTWVVVPMAVIFMLIYTKLSNILSKEALFYTVISP   83 (472)
T ss_pred             HHHHHHHHHHHHHHHHHHHHh----hhhheeecccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHhHHHHHHH
Confidence            334444444555544444333    4444433     4467888888887777766 89999999999999988776666


Q ss_pred             HHHHHHHHHHH----HH---------------------------HH---HHHHHHHHHHhhcCch-h-hHHHHHHHhccc
Q 030356          101 ASVAGLLSAFS----LN---------------------------YL---SLVTLRGLVGIGLGSG-P-VCLSWFLEFIPA  144 (179)
Q Consensus       101 ~~~~~~~~~~~----~~---------------------------~~---~~~~~~~l~G~~~g~~-~-~~~~~~~~~~~~  144 (179)
                      ......++++.    ++                           .|   .+++..=+.|   ... . ....++.|.+..
T Consensus        84 F~~~f~lF~~vl~p~~~~~~p~~~~~~~~~~~~~~~~~~i~~~~~W~~~~FYv~~elw~---~~vvS~lFW~fandi~t~  160 (472)
T TIGR00769        84 FLGFFALFAFVIYPLSDLLHPTALADKLLSLLPPGFMGFIAILRIWSFALFYVMAELWG---SVVLSLLFWGFANQITTI  160 (472)
T ss_pred             HHHHHHHHHHHHhcchhhcCCcHHHHHHHhhcchhhHHHHHHHhhhhHHHHHHHHHHHH---HHHHHHHHHHHHHhcCCH
Confidence            55555544432    00                           11   2222222222   222 3 567889999999


Q ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 030356          145 SNRGMWMVVISIFWTLGTIFEAALAWGNIL  174 (179)
Q Consensus       145 ~~r~~~~~~~~~~~~~g~~~~~~i~~~~~~  174 (179)
                      ++-.|..+++..+.++|..+++.+..++.+
T Consensus       161 ~qakRfy~l~~~ganlg~i~sg~~~~~~~~  190 (472)
T TIGR00769       161 DEAKRFYALFGLGANVALIFSGRTIKYFSK  190 (472)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999888773

These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.

>TIGR00805 oat sodium-independent organic anion transporter

Probab=97.81  E-value=0.00022  Score=58.39  Aligned_cols=73  Identities=19%  Similarity=0.247  Sum_probs=49.8

Q ss_pred             HHHHHHHHHHHHHHhhhcc-hhcccCCCchhHHHHHHHHHH-HHHHHHHHHhhhhcccc--chhHHHHHHHHHHHHH
Q 030356           33 LGLVAEAMEIMILSFIGPA-IKSEWNLSPAQETLLTSVVFA-GLLVGSYSWGFISDNYG--RRKGLLGIAMLASVAG  105 (179)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~-~~~~~~~s~~~~~~~~~~~~~-~~~i~~~~~g~l~d~~G--~r~~~~~~~~~~~~~~  105 (179)
                      +..++............|. +.+++|.++.+++++.....+ +.+++.++.|++.||++  .|+.+..+.++..+..
T Consensus       337 l~~~~~~~~~~~~~~~lP~yl~~~~g~s~~~ag~l~~~~~i~~~~vG~~l~G~l~~r~~~~~~~~~~~~~~~~~~~~  413 (633)
T TIGR00805       337 LAQVIDSLAFNGYITFLPKYLENQYGISSAEANFLIGVVNLPAAGLGYLIGGFIMKKFKLNVKKAAYFAICLSTLSY  413 (633)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHhhhhhhhHHHHHHhhhhheeeeecccHHHHHHHHHHHHHHHH
Confidence            3333444444444444454 455699999999999988776 67899999999999998  4456665555555543

Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.

>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1

Probab=97.77  E-value=0.0034  Score=48.98  Aligned_cols=142  Identities=18%  Similarity=0.120  Sum_probs=94.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhcchhcccCCCchhHHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHHH
Q 030356           28 LIYAGLGLVAEAMEIMILSFIGPAIKSEWNLSPAQETLLTSVVFAGLLVGSYSWGFISDNYGRRKGLLGIAMLASVAGLL  107 (179)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~d~~G~r~~~~~~~~~~~~~~~~  107 (179)
                      .+...++..+-++....+......+....|+++...+..-+...+..+.+.+...++.+|+|..|.=..+......+..+
T Consensus       260 vflas~alalLY~TVLsf~~lmt~yl~~~G~s~~~igi~R~~gav~Gl~gT~~~p~l~~riGlvr~G~~~l~~q~~~L~~  339 (432)
T PF06963_consen  260 VFLASFALALLYFTVLSFGGLMTAYLKSQGYSPSVIGIFRGLGAVFGLLGTWVYPWLMKRIGLVRAGLWSLWWQWVCLAL  339 (432)
T ss_pred             HHHHHHHHHHHHHHHhcCcHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHH
Confidence            44444444444443333444555555566999999999999999999999999999999999888766665544333322


Q ss_pred             HH---HH---H----HHHHHHHHHHHHHhhcCch-hhHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHH
Q 030356          108 SA---FS---L----NYLSLVTLRGLVGIGLGSG-PVCLSWFLEFIPASNRGMWMVVISIFWTLGTIFEAALA  169 (179)
Q Consensus       108 ~~---~~---~----~~~~~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~  169 (179)
                      ..   +.   +    +...++.+-.+.=+|.=.. ....-++.|..|+++||...+.-+...++.-.+...++
T Consensus       340 ~v~~~~~~~~~~~~~s~~~l~~gi~~SR~GLW~fDL~~~qi~Qe~V~~~~Rg~v~gvq~sl~~lf~ll~~~~~  412 (432)
T PF06963_consen  340 CVVSFWAPGSPFSSISAYLLLGGIALSRIGLWSFDLAVTQIMQENVPESERGAVSGVQNSLQSLFELLSFVLT  412 (432)
T ss_pred             HHHHHhcCCCCchhhHHHHHHHHHHHHHHHHHhhhHHHHHhhcccCCHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence            21   11   1    2223333333333444445 56677889999999999999998888888777765544

It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane

>TIGR01272 gluP glucose/galactose transporter

Probab=97.73  E-value=0.00016  Score=53.93  Aligned_cols=65  Identities=15%  Similarity=0.110  Sum_probs=61.1

Q ss_pred             HHHHHHHHHHHHHHHHhhcCch-hhHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 030356          110 FSLNYLSLVTLRGLVGIGLGSG-PVCLSWFLEFIPASNRGMWMVVISIFWTLGTIFEAALAWGNIL  174 (179)
Q Consensus       110 ~~~~~~~~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~~~  174 (179)
                      ..+++..+++.-++.|.|.+.. +..++++++..|+|++++.+++.+...++|..++|.+++.++.
T Consensus         6 ~~~~~~~~l~~~f~~g~G~~~lq~~~n~~v~~~~~~~~~~~~l~~~~~~~~~G~~~gP~i~~~~i~   71 (310)
T TIGR01272         6 SQRYYVLFLGALFVLASGLTILQVAANPYVSILGPIETAASRLALTQAFNKLGTTVAPLFGGSLIL   71 (310)
T ss_pred             HhhHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHCCcchHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence            4578999999999999999998 9999999999999999999999999999999999999999884

Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.

>KOG3098 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.63  E-value=0.00046  Score=53.95  Aligned_cols=105  Identities=12%  Similarity=-0.033  Sum_probs=89.3

Q ss_pred             HHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCch-hhHHHHHHHhccc
Q 030356           66 LTSVVFAGLLVGSYSWGFISDNYGRRKGLLGIAMLASVAGLLSAFSLNYLSLVTLRGLVGIGLGSG-PVCLSWFLEFIPA  144 (179)
Q Consensus        66 ~~~~~~~~~~i~~~~~g~l~d~~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~-~~~~~~~~~~~~~  144 (179)
                      -.++......+.+++.+.+.|+.|.|+.++++........+.+.+.+ -+.+++...+.|+|.+.. .....+++|..++
T Consensus        55 ~~aiiY~~ftv~~l~~psiv~~i~~K~~lv~ga~~y~~f~~gfl~~N-~y~~yfssallG~Gaallw~GqG~ylt~~st~  133 (461)
T KOG3098|consen   55 GQAIIYAFFTVSCLFAPSIVNFLGPKWALVIGATCYAAFPLGFLFPN-SYYLYFSSALLGFGAALLWTGQGGYLTSNSTR  133 (461)
T ss_pred             HHHHHHHHHHHHHHhhHHHHHHhhHHHHHHHHhHHHHHHHHHHHhcc-hHHHHHHHHHhhhhHHheecccceehhhcCCh
Confidence            47888888999999999999999999999999999888877765555 456788899999999988 7778999999999


Q ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHH
Q 030356          145 SNRGMWMVVISIFWTLGTIFEAALAWG  171 (179)
Q Consensus       145 ~~r~~~~~~~~~~~~~g~~~~~~i~~~  171 (179)
                      |.+.+..++.......+.++|..+-..
T Consensus       134 ~tie~Nisi~Wai~~~~li~Ggi~l~~  160 (461)
T KOG3098|consen  134 ETIERNISIFWAIGQSSLIIGGIILFI  160 (461)
T ss_pred             hhHHHHHHHHHHHHHHHHHhhhHhhee
Confidence            999999999888888887777555443

>KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=97.55  E-value=3.9e-05  Score=55.67  Aligned_cols=96  Identities=18%  Similarity=0.155  Sum_probs=71.3

Q ss_pred             HhhhcchhcccCCCchhHHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030356           46 SFIGPAIKSEWNLSPAQETLLTSVVFAGLLVGSYSWGFISDNYGRRKGLLGIAMLASVAGLLSAFSLNYLSLVTLRGLVG  125 (179)
Q Consensus        46 ~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~d~~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G  125 (179)
                      .++.-++.++++..+.+++.+....+-...+...+.|.++||-|||+..+.-++.+.+.++ .-.++.|-.++++|.+-|
T Consensus        57 gPYvYyLYstYgFgkG~IgqLfiaGfgSsmLFGtivgSLaDkqGRKracvtycitYiLsCi-TKhSpqYkVLmVGR~LGG  135 (454)
T KOG4332|consen   57 GPYVYYLYSTYGFGKGDIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCITYILSCI-TKHSPQYKVLMVGRVLGG  135 (454)
T ss_pred             CceeeeeehhcCccCCccceeeecccchHHHHHHHHHHHHhhhccccceeeehHHHHHHHH-hhcCCceEEEeehhhhhh
Confidence            4444556778899999999888888888888889999999999999976554444433322 223567888999999999


Q ss_pred             hhcCch-hhHHHH-HHHhc
Q 030356          126 IGLGSG-PVCLSW-FLEFI  142 (179)
Q Consensus       126 ~~~g~~-~~~~~~-~~~~~  142 (179)
                      +..+.. ...-++ +.|+-
T Consensus       136 iaTsLLFSaFEsWliaEHn  154 (454)
T KOG4332|consen  136 IATSLLFSAFESWLIAEHN  154 (454)
T ss_pred             HHHHHHHHHHHHHHHHHhh
Confidence            988877 665554 46654

>TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT)

Probab=97.34  E-value=0.016  Score=45.51  Aligned_cols=112  Identities=13%  Similarity=0.025  Sum_probs=75.5

Q ss_pred             hHHHHHHHHHHHHHHHHHHHhhhhccccch-hHHHHHHHHHHHHHH---HHHHH---------HHHHHHHHHHHHHHhhc
Q 030356           62 QETLLTSVVFAGLLVGSYSWGFISDNYGRR-KGLLGIAMLASVAGL---LSAFS---------LNYLSLVTLRGLVGIGL  128 (179)
Q Consensus        62 ~~~~~~~~~~~~~~i~~~~~g~l~d~~G~r-~~~~~~~~~~~~~~~---~~~~~---------~~~~~~~~~~~l~G~~~  128 (179)
                      -.-....+++++-.+|+.+..+.. .-++| +.+.+..+.=.+...   ++...         ++-+..++..++.|+..
T Consensus       308 ~~~i~~~~fNvgD~vGR~~~~~~~-~p~~~~~~l~i~s~~R~iFIPlf~lcn~~~~~~~p~~~~~d~~~~~~~~l~gltn  386 (437)
T TIGR00939       308 YPIICFLLFNLFDWLGRSLTSKFM-WPDEDSRWLPILSFLRVLFIPLFLLCNYPQRSRLPVFFPGDAYFIILMLLFGFSN  386 (437)
T ss_pred             HHHHHHHHHHHHHHHHhhhhheeE-eeCCCccchHHHHHHHHHHHHHHHHhcCCccccCCeeecccHHHHHHHHHHHHhh
Confidence            345678888999999998665431 11222 133333333222322   22211         24455677789999999


Q ss_pred             Cch-hhHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 030356          129 GSG-PVCLSWFLEFIPASNRGMWMVVISIFWTLGTIFEAALAWGNIL  174 (179)
Q Consensus       129 g~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~~~  174 (179)
                      |-. .....+..+..++++|..+..+...+..+|..+|..++..+..
T Consensus       387 Gy~~s~~m~~~p~~v~~~e~e~aG~~~~~~l~~Gl~~Gs~l~~~~~~  433 (437)
T TIGR00939       387 GYLGSLSMCLAPRQVDPHEREVAGALMVIFLLVGLALGAVLSFLFVA  433 (437)
T ss_pred             hHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            988 7788888888999999999999999999999888888766543

>KOG3097 consensus Predicted membrane protein [Function unknown]

Probab=97.27  E-value=0.0046  Score=46.18  Aligned_cols=99  Identities=9%  Similarity=0.098  Sum_probs=61.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhcchhcccCCCchhHHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHH
Q 030356           26 LVLIYAGLGLVAEAMEIMILSFIGPAIKSEWNLSPAQETLLTSVVFAGLLVGSYSWGFISDNYGRRKGLLGIAMLASVAG  105 (179)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~d~~G~r~~~~~~~~~~~~~~  105 (179)
                      +-...+...++.....+.....+......++|...      .....+..+..+++.+.+.+++|.|++++++...+.+..
T Consensus        29 knv~i~s~~fl~~f~a~~gl~nlq~~vn~~lg~~s------l~~~y~~l~~s~m~~~~~Ir~~g~K~tm~lav~~Y~lyi  102 (390)
T KOG3097|consen   29 KNVLILSIAFLLTFTAYLGLQNLQTSVNYDLGTVS------LGALYLSLIDSSMFMPLLIRFLGTKWTMVLAVFPYALYI  102 (390)
T ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHHHhcCcccch------hhhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence            33444444555554444444444444444444221      122344555667777799999999999998887776554


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhcCch
Q 030356          106 LLSAFSLNYLSLVTLRGLVGIGLGSG  131 (179)
Q Consensus       106 ~~~~~~~~~~~~~~~~~l~G~~~g~~  131 (179)
                      .. -+-+.+..+.......|++.+..
T Consensus       103 A~-Nl~pr~~tlVPa~~~~G~aa~p~  127 (390)
T KOG3097|consen  103 AA-NLEPRYETLVPAGLVLGMAAGPI  127 (390)
T ss_pred             Hh-hcchhHHhhccHHHhhccccccc
Confidence            32 23456777888888899888776

>COG2270 Permeases of the major facilitator superfamily [General function prediction only]

Probab=97.26  E-value=0.0026  Score=49.03  Aligned_cols=105  Identities=20%  Similarity=0.153  Sum_probs=75.7

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHhhhhccccchhHHHH-HHHHHHHHHHHHHHHHH--HH-HHHHHHHHHHhhcCch-hhHH
Q 030356           61 AQETLLTSVVFAGLLVGSYSWGFISDNYGRRKGLLG-IAMLASVAGLLSAFSLN--YL-SLVTLRGLVGIGLGSG-PVCL  135 (179)
Q Consensus        61 ~~~~~~~~~~~~~~~i~~~~~g~l~d~~G~r~~~~~-~~~~~~~~~~~~~~~~~--~~-~~~~~~~l~G~~~g~~-~~~~  135 (179)
                      +..+...++..+..++-+|+.|.++|+.|+||.... ...+..++...+.+.++  ++ ...+...+..++.... ....
T Consensus        58 a~~gy~~aia~llia~LapiLG~iaD~~g~Rk~~~~~f~~i~i~~~~~L~~i~~~s~~~~~l~~~il~~i~~~~s~Vfyd  137 (438)
T COG2270          58 AYWGYASAIAGLLIALLAPILGTIADYPGPRKKFFGFFTAIGIISTFLLWFIPPGSYLLLLLLFLILASIGFEFSNVFYD  137 (438)
T ss_pred             hHHHHHHHHHHHHHHHHHHHhhhhhccCCCcchHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHhcchhheehh
Confidence            345788889999999999999999999997776554 44555566666666654  43 3344556666776666 6678


Q ss_pred             HHHHHhccccchhHHHHHHHHHHHHHHHHH
Q 030356          136 SWFLEFIPASNRGMWMVVISIFWTLGTIFE  165 (179)
Q Consensus       136 ~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~  165 (179)
                      +++.+..++++-++..++-.....+|+.+.
T Consensus       138 s~L~~~~~k~~~~riS~lg~~~gylgs~i~  167 (438)
T COG2270         138 SMLPRLTTKDNMGRISGLGWALGYLGSVIL  167 (438)
T ss_pred             hHhhhhcCccccCcccccccccccccchHH
Confidence            999999999888888777444444555544

>KOG3762 consensus Predicted transporter [General function prediction only]

Probab=97.25  E-value=9.3e-05  Score=58.32  Aligned_cols=72  Identities=25%  Similarity=0.305  Sum_probs=56.8

Q ss_pred             HHHHHHHHhhhcchhcccCCCchhHHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHH-HHHHHHHHH
Q 030356           39 AMEIMILSFIGPAIKSEWNLSPAQETLLTSVVFAGLLVGSYSWGFISDNYGRRKGLLGIAMLA-SVAGLLSAF  110 (179)
Q Consensus        39 ~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~d~~G~r~~~~~~~~~~-~~~~~~~~~  110 (179)
                      +.......++++-+.+++|+++.+.+.++..--+..+++.|++|.++||+-+||.++++.++. ..+.+++.+
T Consensus        24 ~~~~g~l~pll~vy~kQLGl~p~~~Gtl~g~~P~v~~L~~P~~g~~Adr~r~~r~lllgsl~~~v~a~fll~f   96 (618)
T KOG3762|consen   24 GARFGSLFPLLAVYFKQLGLNPAVVGTLTGTLPLVEFLAAPLWGFLADRYRKRRPLLLGSLLLSVTATFLLVF   96 (618)
T ss_pred             eecccccchHHHHHHHHcCCCHHHhhhhhhHHHHHHHHhHHHHHHHHHHHHhcCchhHHHHHHHHHHHHheee
Confidence            333445566667788899999999999999999999999999999999999888877775554 344444444

>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism]

Probab=97.25  E-value=0.00051  Score=53.31  Aligned_cols=120  Identities=20%  Similarity=0.135  Sum_probs=73.2

Q ss_pred             cCCCchhHHHHHHHHHHHHHHHHHHHhhhhccccch----hHHHHHHH-------HHHHHHHHHH-HHHHHHHHHHHHHH
Q 030356           56 WNLSPAQETLLTSVVFAGLLVGSYSWGFISDNYGRR----KGLLGIAM-------LASVAGLLSA-FSLNYLSLVTLRGL  123 (179)
Q Consensus        56 ~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~d~~G~r----~~~~~~~~-------~~~~~~~~~~-~~~~~~~~~~~~~l  123 (179)
                      .|.+..+..++..+...+..+|.++.|.++||+-|+    ....+.-+       ..+....+.. ...+...+.+..++
T Consensus       278 ~~~~~~~~~ifg~vt~~~G~lGvl~Ggiisd~~~~~~~~~~~~~~~q~~~~~g~~~s~~~L~~~~~~~~~s~~~~~il~~  357 (493)
T KOG1330|consen  278 IGFDHNATLIFGGVTCAGGSLGVLFGGIISDKLSRIFPNSGTLRASQLSAALGAPLSIPFLFLFPAFTSSSMIFGLILFL  357 (493)
T ss_pred             hCCccccchhhhhHHHhhchhhheehHHHHHHHHHhcccccchhHHHHHHhhhhhHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence            456777777888888899999999999999994332    11222211       1222222222 22233334444555


Q ss_pred             HHhhcCch--hhHHHHHHHhccccchhHHHHHHHHHHHH-HHHHHHHHHHHHhcc
Q 030356          124 VGIGLGSG--PVCLSWFLEFIPASNRGMWMVVISIFWTL-GTIFEAALAWGNILL  175 (179)
Q Consensus       124 ~G~~~g~~--~~~~~~~~~~~~~~~r~~~~~~~~~~~~~-g~~~~~~i~~~~~~~  175 (179)
                      .|......  .....+..|..|+++|.++.++-.....+ |..-+|.+.+.+.++
T Consensus       358 ~g~~~~~~~~a~n~~i~l~vV~p~~Rt~a~a~~~~~~h~fgd~~~p~ivGilsd~  412 (493)
T KOG1330|consen  358 VGETISWFNWATNNPIFLEVVPPSRRTTAYALDTVFEHIFGDAASPYIVGILSDK  412 (493)
T ss_pred             HHHHHHhcccccccceeeEecCcccccHHHHHHHHHHHHhccCCCcceehhHHHH
Confidence            66544443  33445668889999999999995554444 555557688888764

>PRK03612 spermidine synthase; Provisional

Probab=97.11  E-value=0.086  Score=42.45  Aligned_cols=117  Identities=15%  Similarity=0.123  Sum_probs=66.2

Q ss_pred             cCCCchhHHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHH--HHHHHHHHH----HHHHHH-HHHHHHHHHHHhhc
Q 030356           56 WNLSPAQETLLTSVVFAGLLVGSYSWGFISDNYGRRKGLLGIAM--LASVAGLLS----AFSLNY-LSLVTLRGLVGIGL  128 (179)
Q Consensus        56 ~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~d~~G~r~~~~~~~~--~~~~~~~~~----~~~~~~-~~~~~~~~l~G~~~  128 (179)
                      +|.+..+.+.+.+++..|..+|+.+.+++.++.-++...+-..+  +..++..+.    .+.... ..++...++.++..
T Consensus        45 ~G~s~~~~~~ii~~fl~glalGs~l~~~~~~~~~~~~~~~e~~i~l~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~l~  124 (521)
T PRK03612         45 LGDSVTQFSTVIGLMLFAMGVGALLSKYLLRDAAAGFVAVELLLALLGGLSALILYAAFAFQGLSRLLLYVLVLLIGLLI  124 (521)
T ss_pred             hCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            57788888999999999999999999988754333332211111  111111111    111111 12233344556666


Q ss_pred             Cch-hhHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 030356          129 GSG-PVCLSWFLEFIPASNRGMWMVVISIFWTLGTIFEAALAWGNI  173 (179)
Q Consensus       129 g~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~~  173 (179)
                      |+. |.......+. ..++-+...|-......+|+++|.++.+++.
T Consensus       125 G~~~Pl~~~~~~~~-~~~~~g~~~g~ly~~ntlGa~~G~l~~~~vL  169 (521)
T PRK03612        125 GMEIPLLMRILQRI-RDQHLGHNVATVLAADYLGALVGGLAFPFLL  169 (521)
T ss_pred             HHHHHHHHHHHHhc-cccchhhhhhhhHhHHhHHHHHHHHHHHHHH
Confidence            665 5444433332 1223456667777788888888888877765

>KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism]

Probab=97.04  E-value=0.037  Score=44.98  Aligned_cols=134  Identities=11%  Similarity=-0.003  Sum_probs=100.8

Q ss_pred             HHHHhhhcchhcccCCCchhHHHHHHHHHHHHHHHHHHHhhhhcc-ccchhHHHHHHHHHHHHHHHHHHHHH--------
Q 030356           43 MILSFIGPAIKSEWNLSPAQETLLTSVVFAGLLVGSYSWGFISDN-YGRRKGLLGIAMLASVAGLLSAFSLN--------  113 (179)
Q Consensus        43 ~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~d~-~G~r~~~~~~~~~~~~~~~~~~~~~~--------  113 (179)
                      .....+..++.++++.+..++.-..+.+.-......+..++++|. +||-+++.++.++..++..+...+..        
T Consensus        55 g~~~nlv~ylt~~~~~~~~~aa~~v~~f~G~~~~~~l~g~~laD~f~gry~tI~~~s~i~~~G~~~lt~~a~~~~l~p~~  134 (571)
T KOG1237|consen   55 GLVSNLVTYLTLELHASGGGAANNVNAFGGTQFLLPLLGAFLADSFLGRYFTINIGSLISLLGLFGLTLSAMIPALLPFM  134 (571)
T ss_pred             cchhHHHHHHHHHhccchHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcc
Confidence            344667788888899888888888888888888888999999996 78889999998888888655443211        


Q ss_pred             -----------------HHHHHHHHHHHHhhcCch-hhHHHHHHHhcc---c-cch--hHHHHHHHHHHHHHHHHHHHHH
Q 030356          114 -----------------YLSLVTLRGLVGIGLGSG-PVCLSWFLEFIP---A-SNR--GMWMVVISIFWTLGTIFEAALA  169 (179)
Q Consensus       114 -----------------~~~~~~~~~l~G~~~g~~-~~~~~~~~~~~~---~-~~r--~~~~~~~~~~~~~g~~~~~~i~  169 (179)
                                       ...++...-+..+|.|+. +...++-+|-++   + +.+  ...+.++.....+|..++-.+.
T Consensus       135 ~~~~~~~~~c~~~s~~q~~~~~~~l~lia~G~gg~r~~~~~fGadQfd~~~~~~~~~~~~fFnW~yf~~~~g~l~a~t~~  214 (571)
T KOG1237|consen  135 CKFKPGGNVCESPSKLQLAVLYGALYLIALGAGGIRPCLLAFGADQFDELDPVEVKGIPSFFNWFYFSQNGGALLAQTVL  214 (571)
T ss_pred             ccCCCCCCcccCcchHHHHHHHHHHHHheeccCCCCCcchhhcccccCccCcchhhCcccchhHHHHHHHHHHHHHHHHH
Confidence                             124455566777788888 888889888888   2 223  3778888889999998887777


Q ss_pred             HHHhccC
Q 030356          170 WGNILLN  176 (179)
Q Consensus       170 ~~~~~~~  176 (179)
                      -++.+..
T Consensus       215 vyiq~~~  221 (571)
T KOG1237|consen  215 VYIQDNV  221 (571)
T ss_pred             Hhhhhcc
Confidence            7775543

>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]

Probab=97.02  E-value=0.04  Score=43.55  Aligned_cols=110  Identities=17%  Similarity=0.083  Sum_probs=82.0

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHhhhhccccch--h-----HHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHH
Q 030356           61 AQETLLTSVVFAGLLVGSYSWGFISDNYGRR--K-----GLLGIAMLASVAGLLSAFS----------LNYLSLVTLRGL  123 (179)
Q Consensus        61 ~~~~~~~~~~~~~~~i~~~~~g~l~d~~G~r--~-----~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~l  123 (179)
                      -..++..++..+.-++.+++..++-.|.+++  .     -+-++..+.+.+.+++...          -+.++++..-++
T Consensus       324 vp~~~fQslNp~~Iii~~pI~a~l~~~l~~~~~~ps~~~KFalGl~l~g~~fl~l~~~~~~~~~~~~~~s~~~lil~y~l  403 (498)
T COG3104         324 VPPAWFQSLNPFFIILFSPILAALWTKLGRGNKQPSTPIKFALGLILAGLGFLILLLAGIWFGGPSGLVSVWWLVLSYVL  403 (498)
T ss_pred             cCHHHHHhhCHHHHHHHHHHHHHHHhHhhcCCCCCCcchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcCHHHHHHHHHH
Confidence            3457788888888888888888888775544  1     1334444444444443332          145677888899


Q ss_pred             HHhhcCch-hhHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHH
Q 030356          124 VGIGLGSG-PVCLSWFLEFIPASNRGMWMVVISIFWTLGTIFEAALAW  170 (179)
Q Consensus       124 ~G~~~g~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~  170 (179)
                      ++++.=.. |+..+++.+..|++-.+..++.+.+....|..++..++.
T Consensus       404 ~s~gEL~iSpvGLs~~t~laP~~~~s~~ma~wfLt~a~~~~l~g~va~  451 (498)
T COG3104         404 QSFGELFISPVGLSMVTKLAPPALKSFIMAMWFLTVAAGQTLGGQVAG  451 (498)
T ss_pred             HHHHHHHhCHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhhceecc
Confidence            99999888 999999999999999999999999888888887766655

>PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters

Probab=96.92  E-value=0.0024  Score=48.83  Aligned_cols=86  Identities=14%  Similarity=0.067  Sum_probs=68.2

Q ss_pred             hHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHhhcCch-hhHHHHHHHhcccc---chhHHHHHHHHHH
Q 030356           92 KGLLGIAMLASVAGLLSAFSL---------NYLSLVTLRGLVGIGLGSG-PVCLSWFLEFIPAS---NRGMWMVVISIFW  158 (179)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~---~r~~~~~~~~~~~  158 (179)
                      |++.++.++..++.++...+.         +...++++..+.++|.|+. +...++.+|.++++   +|.+++.++..+.
T Consensus         2 ktI~~g~~~~~~G~~ll~l~~~~~~~~~~~~~~~~~~gL~lia~G~G~~K~ni~~~~~dq~~~~~~~~~~~~F~~fY~~i   81 (372)
T PF00854_consen    2 KTILLGSIVYLLGHVLLTLSAIPPSLPSGIQLGLFYIGLALIAVGTGGIKPNISPFGADQYDEDDDSRRDSFFNWFYWGI   81 (372)
T ss_dssp             HHHHHHHHHHHHHHHH--HHHTSSSC------CHHHHHHHHHHHHHHCCHHHHHHHHHHCSSTTTTTHHHHHHHHHHHHH
T ss_pred             HhhhHHHHHHHHHHHHhHHHHhcchhhhhHHHHHHHHHHHHHHhccccccccHHHHHHHHhcccchhhhhhhHHHHHHHH
Confidence            567788888888888755432         2256788889999999999 99999999999876   4678888999999


Q ss_pred             HHHHHHHHHHHHHHhccCC
Q 030356          159 TLGTIFEAALAWGNILLNS  177 (179)
Q Consensus       159 ~~g~~~~~~i~~~~~~~~~  177 (179)
                      ++|..+++.+..++.+..+
T Consensus        82 n~G~~~~~~~~~~i~~~~~  100 (372)
T PF00854_consen   82 NIGSLFSPTLVPYIQQNYG  100 (372)
T ss_dssp             HHHHHHHHHCCCHHHHCS-
T ss_pred             hhhhHhhcccchhhccccc
Confidence            9999999988888876543

The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C.

>KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=96.56  E-value=0.015  Score=45.30  Aligned_cols=148  Identities=14%  Similarity=0.053  Sum_probs=89.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhcchhcccCCCchhHHHHHHHHHHHHHHHHHHHhhhhccccch-hHHHHHHHHHHHHHH
Q 030356           28 LIYAGLGLVAEAMEIMILSFIGPAIKSEWNLSPAQETLLTSVVFAGLLVGSYSWGFISDNYGRR-KGLLGIAMLASVAGL  106 (179)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~d~~G~r-~~~~~~~~~~~~~~~  106 (179)
                      +.++.+++.............+......-|.+....|++.....++..+++.+.|.+.||...- ...++......++..
T Consensus       268 F~il~~~ygi~~g~F~~l~~~l~~~l~~sgY~~~~aG~ig~l~iv~Gmlga~~~gii~Dktk~fk~~~~v~~~~~~v~~~  347 (480)
T KOG2563|consen  268 FIILAICYGIGLGLFNSLSTLLNLALCPSGYEGVFAGYIGALMIVAGMLGALASGIIADKTKKFKLTTLVLYLFALVGTL  347 (480)
T ss_pred             HHHHHHHHhhhHHHHHHHHHHhhhccccccCCccccchhHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHH
Confidence            3344444444444444444444434444556667899999999999999999999999997744 444444444444422


Q ss_pred             -HHHHHH---HHHHHHHHHHHHHhhcCch-hhHHHHHHHh-ccccchhHHHHHHHHHHHHHHHHHHHHHHHHhccC
Q 030356          107 -LSAFSL---NYLSLVTLRGLVGIGLGSG-PVCLSWFLEF-IPASNRGMWMVVISIFWTLGTIFEAALAWGNILLN  176 (179)
Q Consensus       107 -~~~~~~---~~~~~~~~~~l~G~~~g~~-~~~~~~~~~~-~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~~~~~  176 (179)
                       +.....   ....++....+.|.+.... |...-+..|. +|..+ +.-.|+.+...++-+++-..+-+...+..
T Consensus       348 ~l~~~t~~~~~~viv~~t~~~~g~~~~~~~Pig~ElgvE~TyPv~E-~tSsGll~~~gq~f~~~~~~~~~~~~~~~  422 (480)
T KOG2563|consen  348 MLLTCTLFLGDSVIVFTTCGLLGFFGTGYLPIGFELGVETTYPVAE-GTSSGLLNLSGQIFGVILVFIMGILAEDL  422 (480)
T ss_pred             HHHHhhccCCceEehhhhHHHHHHhhcCCCCcceeeeeeeccccCC-cccceeEEeehhHHHHHHHHHHHHHhhcc
Confidence             111111   2244555667778777777 7777777775 55444 44466766666665555556555555443

>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins

Probab=96.41  E-value=0.021  Score=44.81  Aligned_cols=120  Identities=16%  Similarity=0.092  Sum_probs=90.2

Q ss_pred             CCchhHHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHhh
Q 030356           58 LSPAQETLLTSVVFAGLLVGSYSWGFISDNYGRRKGLLGIAMLASVAGLLSAF----------SLNYLSLVTLRGLVGIG  127 (179)
Q Consensus        58 ~s~~~~~~~~~~~~~~~~i~~~~~g~l~d~~G~r~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~l~G~~  127 (179)
                      .|+...+.+..+..++..++..+..+..-+..-|+++....++.++..+....          .++.+..+.-.++..+.
T Consensus       252 fs~~f~~~~~~vg~~~~l~g~~~y~~~~~~~~~R~~~~~t~~~~~~~~l~~~~lv~~~n~~~Gi~d~~f~lgd~~l~~~~  331 (433)
T PF03092_consen  252 FSPSFYGTLSIVGSIASLLGILLYRKYFSNWSWRRIFVVTTLVSVLASLFDLLLVTRWNLDLGIPDQWFALGDTILEEVI  331 (433)
T ss_pred             cCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhcccEEEEEEEeeeeCcCCeEEEEEhHHHHHHH
Confidence            78888999999999999999999998888888888888877776655543110          11222222233444444


Q ss_pred             cCch-hhHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Q 030356          128 LGSG-PVCLSWFLEFIPASNRGMWMVVISIFWTLGTIFEAALAWGNILLNS  177 (179)
Q Consensus       128 ~g~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~~~~~~  177 (179)
                      .... .+...+++|..|+..-|+..++.....++|..++..++..+.+..+
T Consensus       332 ~~i~~mP~lvl~a~lcP~G~Egt~yall~s~~Nlg~~~s~~lg~~l~~~~~  382 (433)
T PF03092_consen  332 GMIAFMPSLVLAARLCPKGSEGTVYALLASFSNLGSSVSSTLGAFLMELFG  382 (433)
T ss_pred             HHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            4444 5667788999999999999999999999999999999998887544

Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).

>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs)

Probab=96.28  E-value=0.0011  Score=53.34  Aligned_cols=150  Identities=21%  Similarity=0.194  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhc-chhcccCCCchhHHHHHHHHHH-HHHHHHHHHhhhhcccc--chhHHHHHHHHH
Q 030356           26 LVLIYAGLGLVAEAMEIMILSFIGP-AIKSEWNLSPAQETLLTSVVFA-GLLVGSYSWGFISDNYG--RRKGLLGIAMLA  101 (179)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~s~~~~~~~~~~~~~-~~~i~~~~~g~l~d~~G--~r~~~~~~~~~~  101 (179)
                      ..+....++.............+.| ++..+|+.++++++.+.....+ +.++|.++.|.+..|+.  .|..+....+..
T Consensus       305 p~f~~~~la~~~~~~~~~G~~tF~pKylE~QF~~sas~A~~l~G~v~ip~~~~G~llGG~ivkk~kl~~~~~~~~~~v~~  384 (539)
T PF03137_consen  305 PVFMCLILAGVFESFIVSGFATFLPKYLESQFGLSASQASLLTGIVSIPGAALGILLGGYIVKKFKLSARGAAKFCIVVS  384 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHhhhhcchhheehheEEEEEEEecCcHHHHHHHHHHHH
Confidence            4445555555555555544444554 5556699999999988876666 66688999999999875  344433333222


Q ss_pred             HHHHHH---HHH-----------HHHH----------------------------------------HHHHHHHHHHHhh
Q 030356          102 SVAGLL---SAF-----------SLNY----------------------------------------LSLVTLRGLVGIG  127 (179)
Q Consensus       102 ~~~~~~---~~~-----------~~~~----------------------------------------~~~~~~~~l~G~~  127 (179)
                      .+..+.   ..+           ..++                                        ..+++..++.-+.
T Consensus       385 ~v~~~~~~~~~~~~C~~~~~aGv~~~y~~~~~~~~~~~~~~~Cn~~~~~~~~~a~~G~C~~~C~~~~~~Fl~~~~~~~~~  464 (539)
T PF03137_consen  385 IVSVILYSPLFFLGCPNPPIAGVTVPYHNSTSSSPSCNLTCSCNSCCSSGNGSATPGKCPSDCCNKLIPFLILLFILSFF  464 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHeecCCCCceeeecCccccccCCCCCCCCCCCCCCccCCCcccccCCCcCcccccccHHHHHHHHHHHHH
Confidence            222211   000           0001                                        1122222222233


Q ss_pred             cCch-hhHHHHHHHhccccchhHHHHHHH-HHHHHHHHHHHHHHHHHhcc
Q 030356          128 LGSG-PVCLSWFLEFIPASNRGMWMVVIS-IFWTLGTIFEAALAWGNILL  175 (179)
Q Consensus       128 ~g~~-~~~~~~~~~~~~~~~r~~~~~~~~-~~~~~g~~~~~~i~~~~~~~  175 (179)
                      .+.. .+.....-...|+++|+.+.|+.. ...-+|.+-+|++-|.++|.
T Consensus       465 ~~~~~~p~~~i~LR~V~~~~rs~AlGv~~~~~rllg~IPgPIifG~iiD~  514 (539)
T PF03137_consen  465 TFMSQVPSTLITLRCVPPEQRSFALGVQWLIIRLLGFIPGPIIFGAIIDS  514 (539)
T ss_dssp             --------------------------------------------------
T ss_pred             HHhcccchheeeeccCChhhcchhhhHHHHHHHhhcCcchHHHHhHHHhh
Confidence            3333 444455567889999999999955 55566778899999999985

Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.

>KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism]

Probab=96.26  E-value=0.059  Score=41.49  Aligned_cols=139  Identities=17%  Similarity=0.195  Sum_probs=82.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhcchhcccCCCchhHHHHHHHHHHHHHHHHHHHhhhhc-----cccchhHHHH-HHH
Q 030356           26 LVLIYAGLGLVAEAMEIMILSFIGPAIKSEWNLSPAQETLLTSVVFAGLLVGSYSWGFISD-----NYGRRKGLLG-IAM   99 (179)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~d-----~~G~r~~~~~-~~~   99 (179)
                      .-+..+.+.+..++....... ..|.+.+.-|.|-++.+.....+.  -.---++|.++.|     |+||||..++ +..
T Consensus        31 ~~illLl~LYllQGiP~GL~~-~iP~lL~ak~vSyt~~a~fS~ay~--P~sLKllWaPiVDs~y~k~~GrrksWvvp~q~  107 (510)
T KOG3574|consen   31 SSILLLLFLYLLQGIPLGLIG-AIPLLLQAKGVSYTSQAIFSFAYW--PFSLKLLWAPIVDSVYSKRFGRRKSWVVPCQY  107 (510)
T ss_pred             hhHHHHHHHHHHcCCchhHhh-hhHHHhcCCCcchhhhhhhhhhhh--HHHHHHHHHhhhHHHHHHhhccccceeeehHH
Confidence            334445555778888887777 778888877777776654332111  1123567888888     9999986432 233


Q ss_pred             HHHHHHHHHHH-----------HHHHHHHHHHHHHHHhhcCch-hhHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHH
Q 030356          100 LASVAGLLSAF-----------SLNYLSLVTLRGLVGIGLGSG-PVCLSWFLEFIPASNRGMWMVVISIFWTLGTIFEAA  167 (179)
Q Consensus       100 ~~~~~~~~~~~-----------~~~~~~~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~  167 (179)
                      +....+...+.           .++........++.-+..+.. .+.-.+.-.+..+++-|-+......+...|.+++..
T Consensus       108 llG~~mllLs~~v~~~~g~ng~~p~v~~lt~~f~LLnflaAtQDIAVDgwALtmLs~e~lgyaST~q~Vg~~~GyfL~~~  187 (510)
T KOG3574|consen  108 LLGLFMLLLSYLVDRGLGGNGGLPNVVALTLLFLLLNFLAATQDIAVDGWALTMLSRENLGYASTCQSVGQTAGYFLGNV  187 (510)
T ss_pred             HHHHHHHHHhhCCCcccccCCCCcchHHHHHHHHHHHHHHhhhhhhhhHHHHHhcCHhhcCchhHHHHHHHhhhHHhhcc
Confidence            33333333322           122222222334444445555 566677777888888888877777777777766643

>KOG3098 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.24  E-value=0.44  Score=37.75  Aligned_cols=102  Identities=14%  Similarity=0.205  Sum_probs=72.8

Q ss_pred             hHHHHHHHHHHHHHHHHHHHhhhhc---cccchhHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHH
Q 030356           62 QETLLTSVVFAGLLVGSYSWGFISD---NYGRRKGLLGIAMLASVAGLLSAFS------------------LNYLSLVTL  120 (179)
Q Consensus        62 ~~~~~~~~~~~~~~i~~~~~g~l~d---~~G~r~~~~~~~~~~~~~~~~~~~~------------------~~~~~~~~~  120 (179)
                      -.+.-.....++..++....+.+.+   |+||++.+.++..+..+..++.-..                  +++....+.
T Consensus       280 ~~ai~~~~~g~g~v~~g~~~~~l~~rir~fg~~~~~~~~~~~~~~~~~li~l~~p~dap~~~t~~~~~~~~~~~~~~~ii  359 (461)
T KOG3098|consen  280 LIAIYSIGIGLGEVIGGLDFSILSKRIRGFGRKPTVLIGIIIHLIGFLLIHLSFPNDAPLRPTDSPPLLFTPSYYLALII  359 (461)
T ss_pred             HHHHHHHHHhHHHHHHHHHHHHHhhhhhhcccCcchhHHHHHHHHHHHHHhccccccCCCCCCcccccccccchhHHHHH
Confidence            3455666677777788888888875   5889998888888777666654321                  135567778


Q ss_pred             HHHHHhhcCch-hhHHHHHHHhccccchhHHHHHHHHHHHHHHHH
Q 030356          121 RGLVGIGLGSG-PVCLSWFLEFIPASNRGMWMVVISIFWTLGTIF  164 (179)
Q Consensus       121 ~~l~G~~~g~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~  164 (179)
                      .++.|++-+.. ...+..+.+.+ +++|..+.+++-.-..++..+
T Consensus       360 ~~l~G~~D~~~~t~~~~ii~~~~-~~~~~~~fsi~kfyq~~~s~v  403 (461)
T KOG3098|consen  360 GFLLGFGDACFNTQRYVIIALLY-PDDRAQAFSLFKFYQSVASCV  403 (461)
T ss_pred             HHHHhhHHHHHHHHHHHHHHHHh-cCchHHHHHHHHHHHHHHHHH
Confidence            88899988877 77788888888 577887777765555555443

>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX)

Probab=95.68  E-value=0.4  Score=37.38  Aligned_cols=100  Identities=8%  Similarity=-0.071  Sum_probs=75.1

Q ss_pred             CchhHHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCch-hhHH
Q 030356           59 SPAQETLLTSVVFAGLLVGSYSWGFISDNYGRRKGLLGI--AMLASVAGLLSAFSLNYLSLVTLRGLVGIGLGSG-PVCL  135 (179)
Q Consensus        59 s~~~~~~~~~~~~~~~~i~~~~~g~l~d~~G~r~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~-~~~~  135 (179)
                      +..--|.+-++..+..+++++..|++..++.+..-+.++  .++.+...+++...+|.+..+++-++.+...-.. +...
T Consensus       283 ~~vYNG~VeA~~tllgA~~al~~g~v~~~w~~~~~l~l~~~S~l~a~~L~lm~~t~~Iwv~Y~~yIif~~~y~fliTiA~  362 (412)
T PF01770_consen  283 ESVYNGAVEAASTLLGAIAALLAGYVKVNWDRWGELALGVFSLLQAGLLFLMSFTGNIWVCYAGYIIFRSLYMFLITIAS  362 (412)
T ss_pred             CcccchHHHHHHHHHHHHHHHHHhHhhcchHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334458888888999999999999997777765544433  4444555667788899999998888888777776 7788


Q ss_pred             HHHHHhccccchhHHHHHHHHHH
Q 030356          136 SWFLEFIPASNRGMWMVVISIFW  158 (179)
Q Consensus       136 ~~~~~~~~~~~r~~~~~~~~~~~  158 (179)
                      .-++....++.-+..+|+.....
T Consensus       363 ~qIA~~l~~e~yaLVFGiNtf~A  385 (412)
T PF01770_consen  363 FQIAKNLSEERYALVFGINTFVA  385 (412)
T ss_pred             HHHHHhccccceeeeeeeHHHHH
Confidence            88888888787788888766543

Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane

>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only]

Probab=95.28  E-value=0.018  Score=45.49  Aligned_cols=158  Identities=9%  Similarity=0.043  Sum_probs=90.0

Q ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHHHhhhcc-hhcccCCCchhH----HHHHHHHHHHHHHHHHHHhhhh-ccccchhH
Q 030356           20 FGKFQILVLIYAGLGLVAEAMEIMILSFIGPA-IKSEWNLSPAQE----TLLTSVVFAGLLVGSYSWGFIS-DNYGRRKG   93 (179)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~~~~----~~~~~~~~~~~~i~~~~~g~l~-d~~G~r~~   93 (179)
                      ..+..+.....+.+..+.........-...+. ....++.+.++.    +...++..+-.....+...... -|+..|+.
T Consensus       256 ~~~~d~~~~~vc~~~~~~~~~~~~~iet~~~~~~m~~y~w~~~~av~~~gi~~~~~g~ls~~~~l~~~f~~l~~i~~r~~  335 (488)
T KOG2325|consen  256 KPKLDWVAVLVCIFLRFVVNFIATTIETLSSALTMVMYGWTGSEAVLYNGITLSISGILSVILLLLYIFTRLGKIDKRRI  335 (488)
T ss_pred             cCChhHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHhccccchHHHhhhhHHHHHHHHHHHHHHHHHHHHhhhhcccee
Confidence            34445555566665566555555553433333 333466655554    3333333333333333333333 23345665


Q ss_pred             HHHHHHHHHHHHHHHH----HHH---------------------------HHHHHHH-HHHHHHhhcCch-hhHHHHHHH
Q 030356           94 LLGIAMLASVAGLLSA----FSL---------------------------NYLSLVT-LRGLVGIGLGSG-PVCLSWFLE  140 (179)
Q Consensus        94 ~~~~~~~~~~~~~~~~----~~~---------------------------~~~~~~~-~~~l~G~~~g~~-~~~~~~~~~  140 (179)
                      +..+.+.......+..    +.+                           +...+++ .-++.|.+.-.. ....+.-+|
T Consensus       336 ~~~g~l~~f~~~~i~~yp~~~~s~pv~~~~~~~~~~~~~~y~wc~~~~~v~~~~~l~~~i~~~g~~~P~~~~~~~tlySk  415 (488)
T KOG2325|consen  336 ILLGFLIFFLSYYIFTYPWGFYSGPVQPYNTTYAGCDFEEYSWCDTTTAVPLILYLISFIVVFGIAFPFISTALDTLYSK  415 (488)
T ss_pred             eeehHHHHHHhhheeeeeccccccccccccccccCcCcccchhhccCcccChhhheeehhheeccccccccchHHHHHHH
Confidence            5555444333332221    100                           0112222 345666666655 567788899


Q ss_pred             hccccchhHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Q 030356          141 FIPASNRGMWMVVISIFWTLGTIFEAALAWGNILLNS  177 (179)
Q Consensus       141 ~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~~~~~~  177 (179)
                      ...+++++...++++....++..++|++...+-...|
T Consensus       416 iLgp~~q~~~qg~~~~~~s~~~~~~~~~~t~~~~~~g  452 (488)
T KOG2325|consen  416 ILGPRDQGTMQGVFSISGSIARVVGPIFSTAIFTLSG  452 (488)
T ss_pred             HhCCccccceeEEEEeccchhhhhhHHHHhhhHHhcC
Confidence            9999999999999999999999999999888766554

>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age

Probab=95.02  E-value=0.35  Score=37.58  Aligned_cols=103  Identities=18%  Similarity=0.016  Sum_probs=73.3

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCch-hhHHHHHHHhc
Q 030356           64 TLLTSVVFAGLLVGSYSWGFISDNYGRRKGLLGIAMLASVAGLLSAFSLNYLSLVTLRGLVGIGLGSG-PVCLSWFLEFI  142 (179)
Q Consensus        64 ~~~~~~~~~~~~i~~~~~g~l~d~~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~-~~~~~~~~~~~  142 (179)
                      +.+.-.-.+...+..+...+..+|...+.=+..+..+..++.++.+++++.+.-+++-.+.+++.|.. .....+ +..+
T Consensus        62 ~~Vlladi~P~l~~Kl~aP~fi~~v~y~~Ri~~~~~l~~~g~l~va~~~~v~~~l~Gv~las~ssg~GE~tfL~l-t~~y  140 (402)
T PF02487_consen   62 GAVLLADILPSLLVKLIAPFFIHRVPYWIRILICVALSAAGMLLVAFSPSVWVRLLGVVLASLSSGLGEVTFLSL-THFY  140 (402)
T ss_pred             hHHHHHHHHHHHHHHHHhHhhhhhccchHHHHHHHHHHHHHHhheeeccchhHHHHHHHHHhhhhhhhHHHHHHH-HHhc
Confidence            34555556667777788889999988666566667778888888888899888888899999988887 544444 5566


Q ss_pred             cccchhHHHHHHHHHHHHHHHHHHHHHHH
Q 030356          143 PASNRGMWMVVISIFWTLGTIFEAALAWG  171 (179)
Q Consensus       143 ~~~~r~~~~~~~~~~~~~g~~~~~~i~~~  171 (179)
                      ++.    ..+-+..+.+.++.+|+..=..
T Consensus       141 ~~~----~l~~wssGTG~aGl~Ga~~y~~  165 (402)
T PF02487_consen  141 GKS----SLSAWSSGTGGAGLVGALYYLG  165 (402)
T ss_pred             Ccc----ccccccCCcChhhHHHHHHHHH
Confidence            642    3556666666666666554433

The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane

>COG3202 ATP/ADP translocase [Energy production and conversion]

Probab=94.25  E-value=2.3  Score=34.02  Aligned_cols=153  Identities=8%  Similarity=0.002  Sum_probs=99.1

Q ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhcccCCCchhHHHHHHHHHH-HHHHHHHHHhhhhccccchhHHHHHH
Q 030356           20 FGKFQILVLIYAGLGLVAEAMEIMILSFIGPAIKSEWNLSPAQETLLTSVVFA-GLLVGSYSWGFISDNYGRRKGLLGIA   98 (179)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~-~~~i~~~~~g~l~d~~G~r~~~~~~~   98 (179)
                      .++..+..+..+.+.+++..+.+...-..-+.+.-. ..+++...++=+..-+ +..+..++..++.+++.+.+++-..+
T Consensus        21 i~r~E~~kflpl~Ll~f~I~~ny~~lR~lKDslvv~-~~gae~I~FlK~~~vlP~avif~~iy~kl~~~lt~~~vF~~~~   99 (509)
T COG3202          21 IRRYELKKFLPLALLFFCILFNYNLLRSLKDSLVVT-RQGAESISFLKTWGVLPSAVIFTIIYQKLLNILTREKVFYIIL   99 (509)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHHHHhhhheEee-cCcchhhHHHHHHHhchHHHHHHHHHHHHHhhcCHHHHHHHHH
Confidence            345555555666666666666555544433333222 2356667777777777 67788899999999999999877666


Q ss_pred             HHHHHHHHHHHHH---------------H--------------------HHHHHHHHHHHHHhhcCch-hhHHHHHHHhc
Q 030356           99 MLASVAGLLSAFS---------------L--------------------NYLSLVTLRGLVGIGLGSG-PVCLSWFLEFI  142 (179)
Q Consensus        99 ~~~~~~~~~~~~~---------------~--------------------~~~~~~~~~~l~G~~~g~~-~~~~~~~~~~~  142 (179)
                      .......+++++.               .                    ++..++++.=+.|.-.  . ..-.....|..
T Consensus       100 ~~F~~fF~LFa~Vi~P~~~~~hp~~~~~~~~~~~~p~~l~~~ili~~~Ws~s~~Yi~aELWgslV--~S~lFw~faNeit  177 (509)
T COG3202         100 GFFLGFFALFAFVIYPYKDILHPDPEFSRDLFADLPMFLKWFILIVGEWSYSLFYIMAELWGSLV--LSLLFWQFANEIT  177 (509)
T ss_pred             HHHHHHHHHHHHHHhccccccCCCHHHHHHHHhhCCccceeeeEeecchHHHHHHHHHHHHHHHH--HHHHHHHHHHHhh
Confidence            5555555444431               1                    1122333333333211  1 23456778899


Q ss_pred             cccchhHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 030356          143 PASNRGMWMVVISIFWTLGTIFEAALAWGNILL  175 (179)
Q Consensus       143 ~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~~~~  175 (179)
                      ..++-.|..++++...+++..++..+..++.+.
T Consensus       178 t~~eakRFy~lf~l~~ni~lllsg~~~~~~~k~  210 (509)
T COG3202         178 TIEEAKRFYPLFGLGANISLLLSGEVTSWLSKH  210 (509)
T ss_pred             hHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            999999999999999999999998888887764

>TIGR00806 rfc RFC reduced folate carrier

Probab=94.10  E-value=0.69  Score=37.01  Aligned_cols=97  Identities=10%  Similarity=-0.022  Sum_probs=71.8

Q ss_pred             hHHHHHHHHHHHHHHHHHHHhhhhccccchhHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCch-hhHHHHH
Q 030356           62 QETLLTSVVFAGLLVGSYSWGFISDNYGRRKGLL--GIAMLASVAGLLSAFSLNYLSLVTLRGLVGIGLGSG-PVCLSWF  138 (179)
Q Consensus        62 ~~~~~~~~~~~~~~i~~~~~g~l~d~~G~r~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~-~~~~~~~  138 (179)
                      --|.+-++..+..++.++..|++-.++.+---+.  +..++.+...+++...+|++..+++-++.+..+... ++...-+
T Consensus       299 yNG~veA~~tllga~~a~~ag~~~~~w~~~~~l~l~v~s~~~~gll~~m~~t~~Iw~~Y~~yvlf~~~y~flitia~~~i  378 (511)
T TIGR00806       299 YNGAVDAASTLLGAITSFIAGFVNIRWARWSKLLIAVVSAIQAGLVFWMSQSHDIWVLYVTYVLFRGIYQFLVPIATFQI  378 (511)
T ss_pred             cCCHHHHHHHHHHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHhhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4566777777888889999999977775432333  334445555567778899999999999988888887 8888888


Q ss_pred             HHhccccchhHHHHHHHHHH
Q 030356          139 LEFIPASNRGMWMVVISIFW  158 (179)
Q Consensus       139 ~~~~~~~~r~~~~~~~~~~~  158 (179)
                      ++....+.-|..+|+.++..
T Consensus       379 A~~L~~~~~aLvFGiNtfvA  398 (511)
T TIGR00806       379 ASSLSKELCALVFGINTFVA  398 (511)
T ss_pred             HHHhcccceEEEEecHHHHH
Confidence            88888777788777766443

Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.

>KOG1479 consensus Nucleoside transporter [Nucleotide transport and metabolism]

Probab=93.90  E-value=0.38  Score=37.31  Aligned_cols=109  Identities=16%  Similarity=0.078  Sum_probs=74.7

Q ss_pred             HHHHHHH-HHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHhhcCch-
Q 030356           63 ETLLTSV-VFAGLLVGSYSWGFISDNYGRRKGLLGIAMLASVAGLLSAF---------SLNYLSLVTLRGLVGIGLGSG-  131 (179)
Q Consensus        63 ~~~~~~~-~~~~~~i~~~~~g~l~d~~G~r~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~l~G~~~g~~-  131 (179)
                      .-....+ +++...+|.+...++-++-.|+..  +..++-.+..-++.+         -.+-+.+++...+.|+..|-. 
T Consensus       284 ~~~~~~l~fN~~d~vG~~~a~~~~~~~~r~l~--i~v~lR~lfiPlF~~cn~~~~~v~~~~~~~~~~l~~~lglsnGYlt  361 (406)
T KOG1479|consen  284 ALLLVFLSFNVFDLIGSILAALLTWPDPRKLT--IPVLLRLLFIPLFLLCNYPPLPVVFESDGWFIFLMSLLGLSNGYLT  361 (406)
T ss_pred             HHHHHHHHhHHHHHhhhhhhhcccCCCCceeh--HHHHHHHHHHHHHHHhccCCCCceecCchHHHHHHHHHHhccchHh
Confidence            3445555 889999998888877765533332  333332222222221         224466778888999999887 


Q ss_pred             hhHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 030356          132 PVCLSWFLEFIPASNRGMWMVVISIFWTLGTIFEAALAWGNI  173 (179)
Q Consensus       132 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~~  173 (179)
                      .....+..+..|++++-.+-.+.......|...|..++....
T Consensus       362 sl~m~~aPk~v~~~e~e~aG~~m~~fl~~Gl~~G~~~s~l~~  403 (406)
T KOG1479|consen  362 SLIMMYAPKQVKPSEKEAAGNLMVFFLVGGLALGSLLSWVFV  403 (406)
T ss_pred             hheehhcCCCCChHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence            777888888899999988888888888888888877766543

>PF01733 Nucleoside_tran: Nucleoside transporter; InterPro: IPR002259 Delayed-early response (DER) gene products include growth progression factors and several unknown products of novel cDNAs

Probab=93.80  E-value=0.022  Score=42.59  Aligned_cols=107  Identities=16%  Similarity=0.115  Sum_probs=3.4

Q ss_pred             HHHHHHHHHHHHHHHHHhhhhccc-cchhHHHHHHHHHHHHH---HHHHH----------HHHHHHHHHHHHHHHhhcCc
Q 030356           65 LLTSVVFAGLLVGSYSWGFISDNY-GRRKGLLGIAMLASVAG---LLSAF----------SLNYLSLVTLRGLVGIGLGS  130 (179)
Q Consensus        65 ~~~~~~~~~~~i~~~~~g~l~d~~-G~r~~~~~~~~~~~~~~---~~~~~----------~~~~~~~~~~~~l~G~~~g~  130 (179)
                      ....+++++-.+|+.+.++..-+. .+|+.. +..+.=.+..   +++..          .++-+..++..++.|+..|-
T Consensus       186 ~~fl~Fn~gD~iGR~l~~~~~~~~~~~~~l~-~~s~~R~~fiPlf~~cn~~p~~~~~~~~~~~d~~~~i~~~l~g~TNGy  264 (309)
T PF01733_consen  186 VLFLLFNLGDFIGRFLASWPRWPGPSPRWLW-ILSLLRFLFIPLFLLCNVQPRPRYLPVLFNSDAWFIILMLLFGFTNGY  264 (309)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHhcchhcceeEecccccccHH-HHHHHHHHHHHHHHHHHhhcccccCCCcccchHHHHHHHHHHHHccch
Confidence            356688999999999877643211 244333 3322222222   22211          12335566778899999998


Q ss_pred             h-hhHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 030356          131 G-PVCLSWFLEFIPASNRGMWMVVISIFWTLGTIFEAALAWGN  172 (179)
Q Consensus       131 ~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~  172 (179)
                      . .....+..+..++++|..+..+......+|-.+|..++..+
T Consensus       265 l~tl~m~~~p~~v~~~e~e~aG~~~~~~L~~Gl~~Gs~ls~~~  307 (309)
T PF01733_consen  265 LSTLAMMYAPKSVSPEERELAGSVMSFFLSFGLFIGSVLSFLL  307 (309)
T ss_dssp             --HHHH-------------------------------------
T ss_pred             hhhceeeeCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            8 88888889999999999988888888888888887776554

Murine and human cDNAs from one novel DER gene (DER12) have been characterised to identify its product and to examine its role in the growth response []. Both sequences encode a hydrophobic 36kDa protein that is predicted to contain 8 transmembrane (TM) domains. The protein has been localised to the nucleolus, where its concentration increases following mitogen stimulation []. Although the function of the protein is unknown, its identification as a nucleolar gene transcriptionally activated by growth factors implicates it as participating in the proliferative response []. Sequence analysis reveals the protein to share a high degree of similarity with the C-terminal portion of equilibrative nucleoside transporters. These proteins are integral membrane proteins which enable the movement of hydrophilic nucleosides and nucleoside analogs down their concentration gradients across cell membranes. ENT family members have been identified in humans, mice, fish, tunicates, slime molds, and bacteria []. ; GO: 0005337 nucleoside transmembrane transporter activity, 0006810 transport, 0016020 membrane; PDB: 1HXI_A.

>PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions

Probab=93.65  E-value=3.1  Score=33.45  Aligned_cols=151  Identities=12%  Similarity=0.028  Sum_probs=94.6

Q ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhcccCCCchhHHHHHHHHHH-HHHHHHHHHhhhhccccchhHHHHHH
Q 030356           20 FGKFQILVLIYAGLGLVAEAMEIMILSFIGPAIKSEWNLSPAQETLLTSVVFA-GLLVGSYSWGFISDNYGRRKGLLGIA   98 (179)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~-~~~i~~~~~g~l~d~~G~r~~~~~~~   98 (179)
                      ..+..++-++.+.+.+++..+.+...-..-+.+.-+-. +++....+=....+ +..+...+..+++++++|.+++-...
T Consensus        18 i~~~E~~k~~~l~~m~f~i~f~y~~lR~~KD~lvvt~~-gae~I~flK~~~vlP~a~~f~~~y~kl~n~~s~~~lFy~~~   96 (491)
T PF03219_consen   18 IHRSELKKFLPLALMFFFILFNYTILRDLKDTLVVTAQ-GAEVIPFLKVWGVLPVAILFTILYSKLSNRLSREKLFYIII   96 (491)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCeEEEecC-ChhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence            34555555666666667766666655544444332222 55556665554444 44456778999999999999876655


Q ss_pred             HHHHHHHHHHHHH---------HH-------------------------HHHHHHHHHHHHhhcCch-h-hHHHHHHHhc
Q 030356           99 MLASVAGLLSAFS---------LN-------------------------YLSLVTLRGLVGIGLGSG-P-VCLSWFLEFI  142 (179)
Q Consensus        99 ~~~~~~~~~~~~~---------~~-------------------------~~~~~~~~~l~G~~~g~~-~-~~~~~~~~~~  142 (179)
                      ........++++.         ++                         +..+++..=+.|.   .. + .-+.++.|.+
T Consensus        97 ~~F~~fF~~f~~vlyP~~~~lhp~~~~~~~~~~~~~~~~~~i~~~~~Wt~slfYv~aElwgs---vvlSlLFW~fAN~it  173 (491)
T PF03219_consen   97 IPFLGFFALFAFVLYPNRDILHPDAFADKLLAILPPGFKGFIAMFRNWTFSLFYVMAELWGS---VVLSLLFWGFANEIT  173 (491)
T ss_pred             HHHHHHHHHHHHHHhhchhhcCCCHHHHHhhhhccchHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHhcC
Confidence            5544444333321         10                         1122222222221   22 2 3467888999


Q ss_pred             cccchhHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 030356          143 PASNRGMWMVVISIFWTLGTIFEAALAWGNIL  174 (179)
Q Consensus       143 ~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~~~  174 (179)
                      +.++-.+..+++..+.++|.+++..+..++.+
T Consensus       174 t~~eAKRfYpl~g~ganigli~sG~~~~~~~~  205 (491)
T PF03219_consen  174 TVEEAKRFYPLFGLGANIGLIFSGQLTSYFSS  205 (491)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999888888776

One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane

>KOG3880 consensus Predicted small molecule transporter involved in cellular pH homeostasis (Batten disease protein in human) [General function prediction only]

Probab=91.95  E-value=0.91  Score=34.25  Aligned_cols=109  Identities=15%  Similarity=0.034  Sum_probs=70.5

Q ss_pred             hHHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCch-hhHHHH
Q 030356           62 QETLLTSVVFAGLLVGSYSWGFISDNYGRRKGLLGIAM---LASVAGLLSAFSLNYLSLVTLRGLVGIGLGSG-PVCLSW  137 (179)
Q Consensus        62 ~~~~~~~~~~~~~~i~~~~~g~l~d~~G~r~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~-~~~~~~  137 (179)
                      |--|....+.+|..+..-..-...-+  .-+.+.+--.   +..+.-.+..+.++++..++.-+.-|+-.|.. ....--
T Consensus       289 qYRwyqvlYQlGVFiSRSS~~~~~~p--~l~~LailQ~vNl~ff~~~a~~~ftpsi~ivf~lI~~EGLlGGasYVNTf~~  366 (409)
T KOG3880|consen  289 QYRWYQVLYQLGVFISRSSINLFTMP--YLWLLAILQFVNLLFFLLQAWYWFTPSIWIVFALILFEGLLGGASYVNTFHN  366 (409)
T ss_pred             cchhhheeeeeeEEEEeccceEEech--HHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcCchHHHHHHHH
Confidence            46688888877765544322111111  1122222112   22222334556788888888888999877776 667777


Q ss_pred             HHHhccccchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 030356          138 FLEFIPASNRGMWMVVISIFWTLGTIFEAALAWGN  172 (179)
Q Consensus       138 ~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~  172 (179)
                      +.+-.++++|-.+++.....-.+|..++..++-.+
T Consensus       367 i~~e~~pd~rEfamsavs~sDS~Gi~lA~~lalpl  401 (409)
T KOG3880|consen  367 IHKETEPDVREFAMSAVSISDSIGIFLAGLLALPL  401 (409)
T ss_pred             HhhcCCchHHHHhHhhheecchhhHHHHHHHhccc
Confidence            77778889999999999999988888887766443

>KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism]

Probab=91.35  E-value=1.1  Score=37.59  Aligned_cols=76  Identities=17%  Similarity=0.247  Sum_probs=48.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhc-chhcccCCCchhHHHHHHHHHH-HHHHHHHHHhhhhcccc--chhHHHHHHHHHH
Q 030356           27 VLIYAGLGLVAEAMEIMILSFIGP-AIKSEWNLSPAQETLLTSVVFA-GLLVGSYSWGFISDNYG--RRKGLLGIAMLAS  102 (179)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~s~~~~~~~~~~~~~-~~~i~~~~~g~l~d~~G--~r~~~~~~~~~~~  102 (179)
                      +.....++..+..........++| ++.++|+.+.+.+..++....+ +.++|..+.|++..|+-  .|....+.++...
T Consensus       393 if~~~~l~~~~~~~~~~G~~tFlPKyLE~Qfg~sas~An~l~G~i~vp~~~~Gi~lGG~iikkfkl~~r~~a~~~~~~~~  472 (735)
T KOG3626|consen  393 IFMLVVLASVIESLAITGYITFLPKYLETQFGISASLANILTGSIGVPAAAVGIFLGGLIIKKFKLSARGAAKFVIVCSV  472 (735)
T ss_pred             hHHHHHHHHHHHHHHHhhHHHhhHHHHHHHcCCCHHHHHHHhhhhhhhhhhhhhhccceeeeeecccHHHHHHHHHHHHH
Confidence            444555555555555554444444 5556699999999998855555 45588889999998865  4444444433333

>KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism]

Probab=91.08  E-value=3.9  Score=32.59  Aligned_cols=68  Identities=22%  Similarity=0.096  Sum_probs=51.3

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCch
Q 030356           64 TLLTSVVFAGLLVGSYSWGFISDNYGRRKGLLGIAMLASVAGLLSAFSLNYLSLVTLRGLVGIGLGSG  131 (179)
Q Consensus        64 ~~~~~~~~~~~~i~~~~~g~l~d~~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~  131 (179)
                      .|=..++.+...+.+...-++.||+|-|+.+..+.....++..+.+..++......-+-..|+-.+..
T Consensus       335 ~~GL~ins~~lgi~S~~~~~l~~~~g~r~~y~~~~~~f~~~~~~~gl~~~~~~~~~~~~~~G~~~~~~  402 (498)
T KOG0637|consen  335 CLGLMLNSIVLGIYSLLVEKLSRKFGTRKRYWGGVNAFGLATGLAGLVLNTYVVLSHRSTAGILSSPL  402 (498)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhcCcceEEeehhHHHHHHHHHHhhhhhHHHHHHHHhhcceeecch
Confidence            34556677777799999999999999777777777767777777777777777777777777544443

>KOG3810 consensus Micronutrient transporters (folate transporter family) [Coenzyme transport and metabolism]

Probab=89.93  E-value=0.16  Score=38.69  Aligned_cols=129  Identities=15%  Similarity=0.087  Sum_probs=94.7

Q ss_pred             hhhcchh-cccCCCchhHH-HHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030356           47 FIGPAIK-SEWNLSPAQET-LLTSVVFAGLLVGSYSWGFISDNYGRRKGLLGIAMLASVAGLLSAFSLNYLSLVTLRGLV  124 (179)
Q Consensus        47 ~~~~~~~-~~~~~s~~~~~-~~~~~~~~~~~i~~~~~g~l~d~~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  124 (179)
                      +..|++. .+.++++.|.. -+.-+..-.+.+.-.+.=.+.|..-.|++++.-.+.......+.-+.++...+-+..++.
T Consensus        26 ~~tpyl~gp~~NlT~~~l~~evyPvwTYSYLv~LvpvFlLTD~lrYKPvivlq~ls~v~~w~~lv~g~sV~~mQvlE~Fy  105 (433)
T KOG3810|consen   26 YLTPYLLGPDKNLTEDQLTNEVYPVWTYSYLVGLVPVFLLTDYLRYKPVVVLQALSGVPVWIMLVFGPSVKAMQVLEFFY  105 (433)
T ss_pred             ccchhccCCCCCccHHHHhcccccchhHHHHHHHHHHHHHhhhhhcceeeeeeccchhHHHHHHHhcCCchheeeehhhc
Confidence            3444444 34566776653 233344445555566666789999999998888777777778888888888888888888


Q ss_pred             HhhcCchhhHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 030356          125 GIGLGSGPVCLSWFLEFIPASNRGMWMVVISIFWTLGTIFEAALAWGNILL  175 (179)
Q Consensus       125 G~~~g~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~~~~  175 (179)
                      |...+.....++++=+..+++++-+..+.--.+.-.|-..+..++-.++..
T Consensus       106 G~~tAaEIAYysYIYs~Vd~~~Yqrvt~y~RaA~L~g~~~g~vlaQlLvs~  156 (433)
T KOG3810|consen  106 GPATAAEIAYYSYIYSKVDPEMYKRVTGYCRAAFLVGKFVGSVLAQLLVSL  156 (433)
T ss_pred             ChHHHHHHhhhheeeeecCHHHHHHHHHHhHHHHHHHhHHHhHHHHHHhhh
Confidence            887766577788888888999999988887777777777777777776643

>KOG3810 consensus Micronutrient transporters (folate transporter family) [Coenzyme transport and metabolism]

Probab=89.48  E-value=8.3  Score=29.85  Aligned_cols=94  Identities=10%  Similarity=-0.011  Sum_probs=68.9

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhhccccchhHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCch-hhHHHHHHH
Q 030356           64 TLLTSVVFAGLLVGSYSWGFISDNYGRRKGLL--GIAMLASVAGLLSAFSLNYLSLVTLRGLVGIGLGSG-PVCLSWFLE  140 (179)
Q Consensus        64 ~~~~~~~~~~~~i~~~~~g~l~d~~G~r~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~-~~~~~~~~~  140 (179)
                      |..-++..+..+++.+..|.+.-++.|..-++  ++....+...++++.+++++..++.-++.+...... ++....+++
T Consensus       274 G~veAv~tlLGa~~~~~~g~l~i~w~r~g~~ll~~~s~~~agllf~m~~t~~Iw~~Ya~yvlfr~~y~l~itiA~~~iA~  353 (433)
T KOG3810|consen  274 GAVEAVSTLLGAIAALAAGYLNINWNRWGDLLLAVGSAVQAGLLFIMAQTQHIWVCYAGYVLFRVIYQLTITIATFQIAR  353 (433)
T ss_pred             CHHHHHHHHHHHHHHHHHHheeeccchhhHHHHHHHHHHhhhhhhhhhcccceehhhhhHHHHHhhHhhhhhHHHHHHHH
Confidence            56667778888899999999988777764443  334444444556667778888888887777777776 788888888


Q ss_pred             hccccchhHHHHHHHHH
Q 030356          141 FIPASNRGMWMVVISIF  157 (179)
Q Consensus       141 ~~~~~~r~~~~~~~~~~  157 (179)
                      ....|.-|..+|+....
T Consensus       354 nL~~e~~gLvFGiNTFv  370 (433)
T KOG3810|consen  354 NLSSELFGLVFGINTFV  370 (433)
T ss_pred             hhhhhhheeeeehHHHH
Confidence            88877778777776543

>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1

Probab=87.68  E-value=12  Score=29.61  Aligned_cols=143  Identities=10%  Similarity=-0.045  Sum_probs=75.7

Q ss_pred             HHHHHHHHHHHHhhhcchhccc-CCCchhHHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHHH----HH
Q 030356           35 LVAEAMEIMILSFIGPAIKSEW-NLSPAQETLLTSVVFAGLLVGSYSWGFISDNYGRRKGLLGIAMLASVAGLL----SA  109 (179)
Q Consensus        35 ~~~~~~~~~~~~~~~~~~~~~~-~~s~~~~~~~~~~~~~~~~i~~~~~g~l~d~~G~r~~~~~~~~~~~~~~~~----~~  109 (179)
                      .++.....-.+.+..+.+..+. .-+---.+...-.-.+..++.++..|.+.||..|.++...+.+..-+....    ..
T Consensus        11 h~ls~w~dR~w~Fa~~L~L~~i~p~sLl~~siygl~~~~~~~~f~~~vG~~iD~~~Rl~~~~~~l~~Qn~sv~~s~~~~~   90 (432)
T PF06963_consen   11 HFLSTWGDRMWEFAVPLFLISIFPGSLLPVSIYGLVRSLSAILFGPWVGRWIDRSPRLKVIRTSLVVQNLSVAASCALFL   90 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHhhHHHHHHHhCCcchhhHHHHHHHHHHHHHHHHHHHH
Confidence            3333334444444445444443 213333444455556677788899999999999999876665443333321    11


Q ss_pred             --HH--H-----H--HHHHHHHHHHHHhhcCchhhHHHHH--HHh----c--cccchhHHHHHHHHHHHHHHHHHHHHHH
Q 030356          110 --FS--L-----N--YLSLVTLRGLVGIGLGSGPVCLSWF--LEF----I--PASNRGMWMVVISIFWTLGTIFEAALAW  170 (179)
Q Consensus       110 --~~--~-----~--~~~~~~~~~l~G~~~g~~~~~~~~~--~~~----~--~~~~r~~~~~~~~~~~~~g~~~~~~i~~  170 (179)
                        +.  +     +  ...+++.-.+.|...-.........  .||    .  +++.+.+.++..--.-.+...++|++.+
T Consensus        91 ~l~~~~~~~~~~~~~~~~l~~~~~~~~~i~~Las~~~~iavERDWVvvi~~~~~~~La~~NA~mRRIDL~ckllaPl~vG  170 (432)
T PF06963_consen   91 LLLSYPSSSSQSSWLFIALFALLILLGAIERLASIANTIAVERDWVVVIAGGDPGALARMNATMRRIDLFCKLLAPLFVG  170 (432)
T ss_pred             HHHhCCccccccchHHHHHHHHHHHHHHHHHHHHhhhhheeccchhhhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence              11  0     1  1111222222222221222222111  223    2  4455677777777777788899999999


Q ss_pred             HHhccCC
Q 030356          171 GNILLNS  177 (179)
Q Consensus       171 ~~~~~~~  177 (179)
                      .+.+..+
T Consensus       171 ~l~t~~s  177 (432)
T PF06963_consen  171 LLMTFAS  177 (432)
T ss_pred             HHhhccC
Confidence            9987543

It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane

>PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ]

Probab=85.53  E-value=5.6  Score=32.12  Aligned_cols=139  Identities=16%  Similarity=0.100  Sum_probs=71.2

Q ss_pred             HHHHHHHHHHHHHHHHhhhcchhcc--cCCCchhHHHHH--HHHHHHHHHHHHHH-hhhhccccchhHHHHH-HHHHHHH
Q 030356           31 AGLGLVAEAMEIMILSFIGPAIKSE--WNLSPAQETLLT--SVVFAGLLVGSYSW-GFISDNYGRRKGLLGI-AMLASVA  104 (179)
Q Consensus        31 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~s~~~~~~~~--~~~~~~~~i~~~~~-g~l~d~~G~r~~~~~~-~~~~~~~  104 (179)
                      +.+.+++++..........|.+.++  -+.|-+|.+...  +-.+---.+.+|+. .....|+||||..++- -.+.++.
T Consensus         5 L~~LY~lQGiP~GL~~gsiPflL~~~~~~~sy~q~~~fSla~~PfSlKlLWaPiVDs~y~~~~GRRKSWiiP~Q~l~g~~   84 (544)
T PF13000_consen    5 LVLLYFLQGIPLGLAFGSIPFLLQSMAKKVSYSQQAIFSLASYPFSLKLLWAPIVDSVYSKRIGRRKSWIIPIQYLSGIL   84 (544)
T ss_pred             HHHHHHHcCcccccccccchhhhccccCCCChhHheeeeeeechhHHHHhhhhhhhhhcccccCCcchhhhHHHHHHHHH
Confidence            3444566666665544455777777  567777765422  11111122233322 2345589999975543 2333333


Q ss_pred             HHHHHHHH----------------------HHH--HHHHHHHHHHhhcCch-hhHHHHHHHhccccchhHHHHHHHHHHH
Q 030356          105 GLLSAFSL----------------------NYL--SLVTLRGLVGIGLGSG-PVCLSWFLEFIPASNRGMWMVVISIFWT  159 (179)
Q Consensus       105 ~~~~~~~~----------------------~~~--~~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~  159 (179)
                      .+.....-                      +..  .+....++.=+-.+-. .+.-.+.-.+..++.++.+..-...+..
T Consensus        85 m~~l~~~i~~~~~~~~~~d~~~~~~~~~~~~~~i~~Lt~~F~~L~fl~ATQDIAVDGWALT~Ls~~n~~~ASTcqtvG~~  164 (544)
T PF13000_consen   85 MLYLSYNISQWLLFDGVDDALLGQGESTVNNITIKFLTWFFFILVFLCATQDIAVDGWALTMLSPENVGYASTCQTVGQT  164 (544)
T ss_pred             HHHHHhccchhhcccccchhhhcCCCCcccccchhHHHHHHHHHHHHHccCCceeehhhhhhcChhhcchHHHHHHhHhh
Confidence            33322111                      000  1112221222222333 4445666677788888888877777777


Q ss_pred             HHHHHHHHHH
Q 030356          160 LGTIFEAALA  169 (179)
Q Consensus       160 ~g~~~~~~i~  169 (179)
                      .|.+++..+-
T Consensus       165 ~Gyfls~tvF  174 (544)
T PF13000_consen  165 AGYFLSFTVF  174 (544)
T ss_pred             hhHHHHHHHH
Confidence            7777764443

This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane

>TIGR00880 2_A_01_02 Multidrug resistance protein

Probab=84.45  E-value=7.6  Score=24.15  Aligned_cols=41  Identities=27%  Similarity=0.314  Sum_probs=29.4

Q ss_pred             hHHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHH
Q 030356           62 QETLLTSVVFAGLLVGSYSWGFISDNYGRRKGLLGIAMLAS  102 (179)
Q Consensus        62 ~~~~~~~~~~~~~~i~~~~~g~l~d~~G~r~~~~~~~~~~~  102 (179)
                      ..+.......++..++....+.+.|..|.+..+........
T Consensus        88 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  128 (141)
T TIGR00880        88 ALGLMSAGIALGPLLGPPLGGVLAQFLGWRAPFLFLAILAL  128 (141)
T ss_pred             HHHHHHHhHHHHHHHhHHhHHHHhcccchHHHHHHHHHHHH
Confidence            34666777788888888888888888887776655444433

>KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism]

Probab=84.33  E-value=19  Score=28.50  Aligned_cols=128  Identities=10%  Similarity=-0.019  Sum_probs=72.7

Q ss_pred             hcchhcccCCCchhHHHHHHHHHHHHHHHHHHHhhhhccc------cchhHHHHHHHH-HHHHHHHHHH-HH-------H
Q 030356           49 GPAIKSEWNLSPAQETLLTSVVFAGLLVGSYSWGFISDNY------GRRKGLLGIAML-ASVAGLLSAF-SL-------N  113 (179)
Q Consensus        49 ~~~~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~d~~------G~r~~~~~~~~~-~~~~~~~~~~-~~-------~  113 (179)
                      .+.-.-|.|++.++.+.+.-...-..++.....|+++.+.      -|+..+-+.... ..+....... .+       .
T Consensus       288 t~LkLle~Gv~ke~Lal~~v~~~plqI~l~~~~gk~ta~~~pl~~~lka~~~R~~~~~~~t~Lv~~~~~~~~~~G~~~~~  367 (510)
T KOG3574|consen  288 TSLKLLEHGVPKEELALIAVPLVPLQIALPLYIGKWTAGPRPLNVFLKAVPYRLGGGLVQTALVWWTPTLGHSDGTFPRG  367 (510)
T ss_pred             cchHHHHcCCChhHheeeeeehhhHHHhhhhhheeecCCCCcchHHHHhhhHHHHHHHHHHHHHhhhcccccCCCceeec
Confidence            3444567899999888766444444445555555554321      111111111111 1111111111 01       1


Q ss_pred             HHH-HHHHHHHHHhhcCch-hhHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHHHhccC
Q 030356          114 YLS-LVTLRGLVGIGLGSG-PVCLSWFLEFIPASNRGMWMVVISIFWTLGTIFEAALAWGNILLN  176 (179)
Q Consensus       114 ~~~-~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~~~~~  176 (179)
                      +.. .+....+.+...-.. ....+..++..+|+..|+.|.+.+...++|+-.-..+..+++|..
T Consensus       368 ~~il~i~~y~~~~~~~ts~fv~~maf~aqisdp~iggTymTlLNTLsnLGg~wp~tv~l~l~D~l  432 (510)
T KOG3574|consen  368 YYILLITSYAFHQVFVTSMFVSGMAFHAQISDPAIGGTYMTLLNTLSNLGGNWPGTVALWLADGL  432 (510)
T ss_pred             hHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccCccHHHHHHHHHHhcCCcHHHHHHHhcccC
Confidence            222 222334444433333 556777889999999999999999999999988888888887754

>PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ]

Probab=80.47  E-value=30  Score=28.21  Aligned_cols=56  Identities=9%  Similarity=0.058  Sum_probs=44.7

Q ss_pred             HHHHHhhcCch-hhHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHHHhccC
Q 030356          121 RGLVGIGLGSG-PVCLSWFLEFIPASNRGMWMVVISIFWTLGTIFEAALAWGNILLN  176 (179)
Q Consensus       121 ~~l~G~~~g~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~~~~~  176 (179)
                      .++..+..-.. ....++-+++.+|..-|+.|.+.|+..++|+-.-..+.-+++|..
T Consensus       412 ~~l~sf~stvmFVai~AFharISDP~IGGTYMTLLNTvSNLGGtWP~~~vL~lVD~f  468 (544)
T PF13000_consen  412 HVLSSFMSTVMFVAIMAFHARISDPAIGGTYMTLLNTVSNLGGTWPRTFVLWLVDYF  468 (544)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhccCcccchHHHHHHHHHHhcCCCchHHHHHHHhhhc
Confidence            44444544445 566778889999999999999999999999988888888888764

This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	179
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	2e-05
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	6e-05

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 Length = 451

 Score = 43.1 bits (102), Expect = 2e-05
 Identities = 26/160 (16%), Positives = 48/160 (30%), Gaps = 14/160 (8%)

Query: 20  FGKFQILVLIYAGLGLVAEAMEIMILSFIGPAIKSEWNLSPAQETLLTSVVFAGLLVGSY 79
           + + +  + +    G  A  +     +   P +  +   S        S +        +
Sbjct: 22  YRRLRWQIFLGIFFGYAAYYLVRKNFALAMPYLVEQG-FSRGDLGFALSGISIAYGFSKF 80

Query: 80  SWGFISDNYGRRKGLLGIAMLASVA----GLLSAFSLNYLSLVTLRGLVGIGLGSG-PVC 134
             G +SD    R  L    +LA+      G +   + +   +  L  L G   G G P C
Sbjct: 81  IMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPC 140

Query: 135 L----SWFLEFIPASNRGMWMVVISIFWTLGTIFEAALAW 170
                 W+        RG  + V +    +G      L  
Sbjct: 141 GRTMVHWW----SQKERGGIVSVWNCAHNVGGGIPPLLFL 176

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli} Length = 375

 Score = 41.5 bits (98), Expect = 6e-05
 Identities = 18/85 (21%), Positives = 33/85 (38%)

Query: 50  PAIKSEWNLSPAQETLLTSVVFAGLLVGSYSWGFISDNYGRRKGLLGIAMLASVAGLLSA 109
             +  + N+       +         V    +G ISD  GRR  +L    +  +A L++ 
Sbjct: 24  ADMARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVAV 83

Query: 110 FSLNYLSLVTLRGLVGIGLGSGPVC 134
            + +   L+    + G+G G G V 
Sbjct: 84  TTSSLTVLIAASAMQGMGTGVGGVM 108

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	179
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	99.92
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	99.9
4gc0_A	491	D-xylose-proton symporter; MFS, transport protein;	99.87
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	99.86
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	99.83
2xut_A	524	Proton/peptide symporter family protein; transport	99.79
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	99.67
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	99.62
2cfq_A	417	Lactose permease; transport, transport mechanism,	99.58
2cfq_A	417	Lactose permease; transport, transport mechanism,	99.47
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	99.45
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	99.43
4gc0_A	491	D-xylose-proton symporter; MFS, transport protein;	99.38
2xut_A	524	Proton/peptide symporter family protein; transport	98.72

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*

Probab=99.92  E-value=1.6e-24  Score=165.63  Aligned_cols=154  Identities=16%  Similarity=0.186  Sum_probs=141.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhcchhcccCCCchhHHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHH
Q 030356           24 QILVLIYAGLGLVAEAMEIMILSFIGPAIKSEWNLSPAQETLLTSVVFAGLLVGSYSWGFISDNYGRRKGLLGIAMLASV  103 (179)
Q Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~d~~G~r~~~~~~~~~~~~  103 (179)
                      +++....+++..+..+++........|.+.+++|.+..+.+++.+.+.++..+++++.|+++||+|||++++.+.++.++
T Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~  103 (438)
T 3o7q_A           24 YIIPFALLCSLFFLWAVANNLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYAL  103 (438)
T ss_dssp             THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHHHHH
Confidence            34555566667778888888888889999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHH---HHHHHHHHHHHHHHHHHhhcCch-hhHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHHHh-ccCC
Q 030356          104 AGLLS---AFSLNYLSLVTLRGLVGIGLGSG-PVCLSWFLEFIPASNRGMWMVVISIFWTLGTIFEAALAWGNI-LLNS  177 (179)
Q Consensus       104 ~~~~~---~~~~~~~~~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~~-~~~~  177 (179)
                      +.+++   .++++++.+++.|++.|++.+.. +...+++.|++|+|+|++++++++....+|..++|.+++++. +..+
T Consensus       104 ~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~  182 (438)
T 3o7q_A          104 GAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSNVP  182 (438)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHHHTSSC
T ss_pred             HHHHHHhccccccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence            99988   77889999999999999999998 889999999999999999999999999999999999999988 5443

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1

Probab=99.90  E-value=2.4e-23  Score=159.52  Aligned_cols=155  Identities=17%  Similarity=0.129  Sum_probs=143.0

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhcccCCCchhHHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHH
Q 030356           22 KFQILVLIYAGLGLVAEAMEIMILSFIGPAIKSEWNLSPAQETLLTSVVFAGLLVGSYSWGFISDNYGRRKGLLGIAMLA  101 (179)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~d~~G~r~~~~~~~~~~  101 (179)
                      +.+++....+++..+....+........|.+.+++ .++.+.+++.+++.++..+++++.|+++||+|||++++.+.++.
T Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~  102 (451)
T 1pw4_A           24 RLRWQIFLGIFFGYAAYYLVRKNFALAMPYLVEQG-FSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILA  102 (451)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTSHHHHHHHTTSST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhcCchHHHHHHHHHH
Confidence            45566677777778888888888888899999999 99999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHH----HHHHHHHHHHHHHHHhhcCch-hhHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHHHhccC
Q 030356          102 SVAGLLSAF----SLNYLSLVTLRGLVGIGLGSG-PVCLSWFLEFIPASNRGMWMVVISIFWTLGTIFEAALAWGNILLN  176 (179)
Q Consensus       102 ~~~~~~~~~----~~~~~~~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~~~~~  176 (179)
                      +++.+++++    +++++.+++.|++.|++.+.. +...+++.|++|+++|++++++++....+|..++|.+++++.+..
T Consensus       103 ~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~  182 (451)
T 1pw4_A          103 AAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWF  182 (451)
T ss_dssp             HHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHT
T ss_pred             HHHHHHHHhhhhccccHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            999999999    899999999999999999988 889999999999999999999999999999999999999987655


Q ss_pred             C
Q 030356          177 S  177 (179)
Q Consensus       177 ~  177 (179)
                      +
T Consensus       183 g  183 (451)
T 1pw4_A          183 N  183 (451)
T ss_dssp             C
T ss_pred             c
Confidence            4

>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*

Probab=99.87  E-value=1.6e-21  Score=151.10  Aligned_cols=154  Identities=19%  Similarity=0.243  Sum_probs=134.9

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhcccCC--------CchhHHHHHHHHHHHHHHHHHHHhhhhccccchhH
Q 030356           22 KFQILVLIYAGLGLVAEAMEIMILSFIGPAIKSEWNL--------SPAQETLLTSVVFAGLLVGSYSWGFISDNYGRRKG   93 (179)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------s~~~~~~~~~~~~~~~~i~~~~~g~l~d~~G~r~~   93 (179)
                      ++.+.+.+..+++.+..++|...++...|.+.++++.        +..+.+++.+.+.+|..+|++++|+++||+|||++
T Consensus         8 ~y~~~i~~~a~lg~~~~Gyd~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~G~~iG~~~~G~laDr~GRk~~   87 (491)
T 4gc0_A            8 SYIFSITLVATLGGLLFGYDTAVISGTVESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNRFGRRDS   87 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHGGGGTHHHHHHHHTGGGCCCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred             HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHH
Confidence            3455666666778888899998888888887776532        23457899999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHhhcCch-hhHHHHHHHhccccchhHHHHHH
Q 030356           94 LLGIAMLASVAGLLSA------------------FSLNYLSLVTLRGLVGIGLGSG-PVCLSWFLEFIPASNRGMWMVVI  154 (179)
Q Consensus        94 ~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~r~~~~~~~  154 (179)
                      +.++.++..++.++++                  .++|+..+++.|++.|++.|.. +..+.++.|+.|+++|++..++.
T Consensus        88 l~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~~R~l~G~g~G~~~~~~~~~i~E~~p~~~rg~~~~~~  167 (491)
T 4gc0_A           88 LKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIYRIIGGIGVGLASMLSPMYIAELAPAHIRGKLVSFN  167 (491)
T ss_dssp             HHHHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHhhhhhHHhh
Confidence            9999999999999888                  4789999999999999999998 99999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhcc
Q 030356          155 SIFWTLGTIFEAALAWGNILL  175 (179)
Q Consensus       155 ~~~~~~g~~~~~~i~~~~~~~  175 (179)
                      +....+|..+++.++..+...
T Consensus       168 ~~~~~~g~~~~~~~~~~~~~~  188 (491)
T 4gc0_A          168 QFAIIFGQLLVYCVNYFIARS  188 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTT
T ss_pred             hhhhhhhhhhhhhcchhhccc
Confidence            999999999998888877654

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}

Probab=99.86  E-value=5.4e-21  Score=143.53  Aligned_cols=146  Identities=14%  Similarity=0.096  Sum_probs=135.3

Q ss_pred             HHHHHHHHHHHHHHHHHhhhcchhcccCCCchhHHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHHHHH
Q 030356           30 YAGLGLVAEAMEIMILSFIGPAIKSEWNLSPAQETLLTSVVFAGLLVGSYSWGFISDNYGRRKGLLGIAMLASVAGLLSA  109 (179)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~d~~G~r~~~~~~~~~~~~~~~~~~  109 (179)
                      .+++..+..........+..|.+.+++|.|+++.+++.+...++..+++++.|+++||+|||+++..+....+++.+...
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~   83 (375)
T 2gfp_A            4 MLVLLVAVGQMAQTIYIPAIADMARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVAV   83 (375)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhhhhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHH
Confidence            44555666777777788888999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhhcCch-hhHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 030356          110 FSLNYLSLVTLRGLVGIGLGSG-PVCLSWFLEFIPASNRGMWMVVISIFWTLGTIFEAALAWGNILL  175 (179)
Q Consensus       110 ~~~~~~~~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~~~~  175 (179)
                      ++++++.+++.|++.|++.+.. +...+++.|++|+|+|++++++++....+|..++|.+++++.+.
T Consensus        84 ~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~  150 (375)
T 2gfp_A           84 TTSSLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTM  150 (375)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCH
T ss_pred             HhccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHh
Confidence            9999999999999999999988 88999999999999999999999999999999999999988764

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}

Probab=99.83  E-value=7.1e-20  Score=141.90  Aligned_cols=132  Identities=13%  Similarity=0.107  Sum_probs=120.2

Q ss_pred             Hhhhcchhcc-----cCCCchhHHHHHHHHHHHHHHHHHHHhhhhcc-ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030356           46 SFIGPAIKSE-----WNLSPAQETLLTSVVFAGLLVGSYSWGFISDN-YGRRKGLLGIAMLASVAGLLSAFSLNYLSLVT  119 (179)
Q Consensus        46 ~~~~~~~~~~-----~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~d~-~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~  119 (179)
                      ....+++.++     +|.|+.+.+++.+.+.++..+++++.|+++|| +|||+++..+.++.+++.++++++++++.+++
T Consensus        34 ~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~  113 (491)
T 4aps_A           34 AILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHIVLALPFGASALFG  113 (491)
T ss_dssp             HHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHSCCSTTHHHH
T ss_pred             HHHHHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence            3444555554     99999999999999999999999999999999 89999999999999999999999999999999


Q ss_pred             HHHHHHhhcCch-hhHHHHHHHhccccc--hhHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Q 030356          120 LRGLVGIGLGSG-PVCLSWFLEFIPASN--RGMWMVVISIFWTLGTIFEAALAWGNILLNS  177 (179)
Q Consensus       120 ~~~l~G~~~g~~-~~~~~~~~~~~~~~~--r~~~~~~~~~~~~~g~~~~~~i~~~~~~~~~  177 (179)
                      .|++.|++.+.. +...+++.|++|+++  |+.++++++....+|..++|.+++++.+..+
T Consensus       114 ~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g  174 (491)
T 4aps_A          114 SIILIIIGTGFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEAAG  174 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred             HHHHHHHHHHhccchHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence            999999999988 889999999999988  7788888999999999999999999887554

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}

Probab=99.79  E-value=1.3e-18  Score=135.92  Aligned_cols=133  Identities=16%  Similarity=0.154  Sum_probs=119.7

Q ss_pred             HHhhhcchhcccC------CCchhHHHHHHHHHHHHHHHHHHHhhhhccc-cchhHHHHHHHHHHHHHHHHHHHH-HHHH
Q 030356           45 LSFIGPAIKSEWN------LSPAQETLLTSVVFAGLLVGSYSWGFISDNY-GRRKGLLGIAMLASVAGLLSAFSL-NYLS  116 (179)
Q Consensus        45 ~~~~~~~~~~~~~------~s~~~~~~~~~~~~~~~~i~~~~~g~l~d~~-G~r~~~~~~~~~~~~~~~~~~~~~-~~~~  116 (179)
                      .....+++.+++|      .++.+.+++.+.+.++..+++++.|+++||+ |||+++..+.++.+++.+++.+++ +++.
T Consensus        32 ~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~  111 (524)
T 2xut_A           32 RNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGHAFLAIFEHSVQG  111 (524)
T ss_dssp             HHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHHHHTSSCHHH
T ss_pred             HHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhcccHHH
Confidence            3444456677888      9999999999999999999999999999999 999999999999999999999988 9999


Q ss_pred             HHHHHHHHHhhcCch-hhHHHHHHHhccccchhHHHHH---HHHHHHHHHHHHHHHHHHHhccCC
Q 030356          117 LVTLRGLVGIGLGSG-PVCLSWFLEFIPASNRGMWMVV---ISIFWTLGTIFEAALAWGNILLNS  177 (179)
Q Consensus       117 ~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~r~~~~~~---~~~~~~~g~~~~~~i~~~~~~~~~  177 (179)
                      +++.|++.|++.+.. +...+++.|++|+++|+++.+.   ++....+|..++|.+++++.+..+
T Consensus       112 ~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g  176 (524)
T 2xut_A          112 FYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKNFG  176 (524)
T ss_dssp             HHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTSC
T ss_pred             HHHHHHHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence            999999999999998 8899999999999999876666   899999999999999998886543

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1

Probab=99.67  E-value=1.1e-15  Score=116.83  Aligned_cols=143  Identities=15%  Similarity=0.036  Sum_probs=116.5

Q ss_pred             HHHHHHHHHHHHhhhcchhcc-cCCCchhHHHHHHHHHHHHHHHHHHHhhhhccc--cchhHHHHHHHHHH-HHHHHHHH
Q 030356           35 LVAEAMEIMILSFIGPAIKSE-WNLSPAQETLLTSVVFAGLLVGSYSWGFISDNY--GRRKGLLGIAMLAS-VAGLLSAF  110 (179)
Q Consensus        35 ~~~~~~~~~~~~~~~~~~~~~-~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~d~~--G~r~~~~~~~~~~~-~~~~~~~~  110 (179)
                      .+.............|.+.++ +|.++.+.+++.+...++..++.++.|++.||+  |||+.+..+..+.. ++.++..+
T Consensus       261 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  340 (451)
T 1pw4_A          261 NVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWM  340 (451)
T ss_dssp             HHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTS
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHH
Confidence            334444444444555655555 899999999999999999999999999999999  99999888776665 55555554


Q ss_pred             H--HHHHHHHHHHHHHHhhcCch-hhHHHHHHHhccccchhHHHHHHHHHHHH-HHHHHHHHHHHHhccCC
Q 030356          111 S--LNYLSLVTLRGLVGIGLGSG-PVCLSWFLEFIPASNRGMWMVVISIFWTL-GTIFEAALAWGNILLNS  177 (179)
Q Consensus       111 ~--~~~~~~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~-g~~~~~~i~~~~~~~~~  177 (179)
                      .  .+...+.+..++.|++.+.. +....++.|.+|+++|+++.++++....+ |..++|.+.+++.+..+
T Consensus       341 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g  411 (451)
T 1pw4_A          341 NPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFG  411 (451)
T ss_dssp             CCTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred             hcccCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            4  35666777788899988877 77889999999999999999999999999 99999999999988754

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*

Probab=99.62  E-value=5.5e-15  Score=112.69  Aligned_cols=123  Identities=12%  Similarity=0.087  Sum_probs=104.7

Q ss_pred             hhcccCCCchhHHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCch
Q 030356           52 IKSEWNLSPAQETLLTSVVFAGLLVGSYSWGFISDNYGRRKGLLGIAMLASVAGLLSAFSLNYLSLVTLRGLVGIGLGSG  131 (179)
Q Consensus        52 ~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~d~~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~  131 (179)
                      +.+.+|.++.+.++..+...++..++.++.|++.||+|||+.+..+.++..++.++..+.++...+. ..++.|++.+..
T Consensus       286 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~~~~~~  364 (438)
T 3o7q_A          286 VEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFAGGHVGLI-ALTLCSAFMSIQ  364 (438)
T ss_dssp             HHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCCHHHHHH-HHHHHHHHHTTH
T ss_pred             hhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHcCCcHHHH-HHHHHHHHHHHH
Confidence            3444699999999999999999999999999999999999999999988888888777776665444 347888888888


Q ss_pred             -hhHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Q 030356          132 -PVCLSWFLEFIPASNRGMWMVVISIFWTLGTIFEAALAWGNILLNS  177 (179)
Q Consensus       132 -~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~~~~~~  177 (179)
                       +...++..|.+|++ |+.+.++.. ...+|..++|.+.+++.+..+
T Consensus       365 ~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~g~~~~~~~~g~l~~~~g  409 (438)
T 3o7q_A          365 YPTIFSLGIKNLGQD-TKYGSSFIV-MTIIGGGIVTPVMGFVSDAAG  409 (438)
T ss_dssp             HHHHHHHHHSSCGGG-HHHHHHHHH-HTTHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHhhcccc-ccchhhHHH-HHHHHHHHHHHHHHHHHHHhc
Confidence             88889989999966 888888877 566999999999999988755

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*

Probab=99.58  E-value=1.3e-14  Score=110.67  Aligned_cols=117  Identities=18%  Similarity=0.087  Sum_probs=97.4

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCch-hhHHHHH
Q 030356           60 PAQETLLTSVVFAGLLVGSYSWGFISDNYGRRKGLLGIAMLASVAGLLSAFSLNYLSLVTLRGLVGIGLGSG-PVCLSWF  138 (179)
Q Consensus        60 ~~~~~~~~~~~~~~~~i~~~~~g~l~d~~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~-~~~~~~~  138 (179)
                      ..+.++..++..++..++.++.|+++||+|||+++..+..+.++..+...+.++...+.+..++.+++.+.. +....++
T Consensus       258 ~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  337 (417)
T 2cfq_A          258 TRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKYI  337 (417)
T ss_dssp             THHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHTTHHHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            455678888888899999999999999999999998888887777666666666666667777777776655 6667899


Q ss_pred             HHhccccchhHHHHH-HHHHHHHHHHHHHHHHHHHhccC
Q 030356          139 LEFIPASNRGMWMVV-ISIFWTLGTIFEAALAWGNILLN  176 (179)
Q Consensus       139 ~~~~~~~~r~~~~~~-~~~~~~~g~~~~~~i~~~~~~~~  176 (179)
                      .|.+|++.|+++.++ ++....+|..++|.+++++.+..
T Consensus       338 ~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~  376 (417)
T 2cfq_A          338 TSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESI  376 (417)
T ss_dssp             HHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHS
T ss_pred             HHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhc
Confidence            999999999999999 58889999999999999887643

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*

Probab=99.47  E-value=3.5e-14  Score=108.25  Aligned_cols=132  Identities=17%  Similarity=0.053  Sum_probs=90.8

Q ss_pred             HHHHhhhcc-hhcccCCCchhHHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHH---HHHHHHHHH-HH
Q 030356           43 MILSFIGPA-IKSEWNLSPAQETLLTSVVFAGLLVGSYSWGFISDNYGRRKGLLGIAMLASVAGL---LSAFSLNYL-SL  117 (179)
Q Consensus        43 ~~~~~~~~~-~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~d~~G~r~~~~~~~~~~~~~~~---~~~~~~~~~-~~  117 (179)
                      ....++.|. +.+++|.|+.+.+++.+...++..++++++|+++||+|||++++.+..+.++...   ...+.+... ..
T Consensus        24 ~~~~~~~~~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  103 (417)
T 2cfq_A           24 GAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGPLLQYNI  103 (417)
T ss_dssp             HHHTTTHHHHHHTTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTSTTCCHHHHHHHHTTSCHHHHHHHTHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333344444 5566899999999999999999999999999999999999999988777654321   112222211 12


Q ss_pred             HHHHHHHHhhcCch-hhHHHHHHHhccc--cchhHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 030356          118 VTLRGLVGIGLGSG-PVCLSWFLEFIPA--SNRGMWMVVISIFWTLGTIFEAALAWGNIL  174 (179)
Q Consensus       118 ~~~~~l~G~~~g~~-~~~~~~~~~~~~~--~~r~~~~~~~~~~~~~g~~~~~~i~~~~~~  174 (179)
                      ...+.+.|++.+.. +.......++.++  ++|+...+.......+|..++|.+++++.+
T Consensus       104 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~l~~~l~~  163 (417)
T 2cfq_A          104 LVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFT  163 (417)
T ss_dssp             CHHHHGGGSSTTHHHHTTHHHHHHHHHHHHHHHTCCHHHHSSSTTTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34455656555544 3334444444433  345666777777788899999999998875

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}

Probab=99.45  E-value=4.4e-14  Score=105.86  Aligned_cols=140  Identities=16%  Similarity=0.117  Sum_probs=104.2

Q ss_pred             HHHHHHHHHHHHHHhhhcchhcc-cCCCchhHHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHH-HHHHHH--HH
Q 030356           33 LGLVAEAMEIMILSFIGPAIKSE-WNLSPAQETLLTSVVFAGLLVGSYSWGFISDNYGRRKGLLGIAML-ASVAGL--LS  108 (179)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~~~~~-~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~d~~G~r~~~~~~~~~-~~~~~~--~~  108 (179)
                      +..+.............|.+.++ +|.++.+.+.+.+...++..++.++.+++.||++++.  ..+... ...+..  ..
T Consensus       206 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~~--~~~~~~~~~~~~~~~~~  283 (375)
T 2gfp_A          206 LMLIGGLAGIAAFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFSTLM--WQSVICCLLAGLLMWIP  283 (375)
T ss_dssp             HHHHHHHHHHHHHHHHCSCSSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTHHHHHH--HHHHHHHHHTSSSSSHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHH
Confidence            33344444445555556666555 8999999999999999999999999999999999833  222222 222221  22


Q ss_pred             HH--HHHHHHHHHHHHHHHhhcCch-hhHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 030356          109 AF--SLNYLSLVTLRGLVGIGLGSG-PVCLSWFLEFIPASNRGMWMVVISIFWTLGTIFEAALAWGNILL  175 (179)
Q Consensus       109 ~~--~~~~~~~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~~~~  175 (179)
                      ..  .++.+.+.+..++.|++.+.. +....++.|..| ++|+++.++.+....+|..++|.+.+.+.+.
T Consensus       284 ~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p-~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~  352 (375)
T 2gfp_A          284 DWFGVMNVWTLLVPAALFFFGAGMLFPLATSGAMEPFP-FLAGTAGALVGGLQNIGSGVLASLSAMLPQT  352 (375)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHTSSTTHHHHHTHHH-HHHHHHHHHHHHHHHHHHHCCSTTCTHHHHH
T ss_pred             hhhccccHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCC-cccchHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            22  236666677788889988887 888999999998 8999999999999999999999888877543

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}

Probab=99.43  E-value=2e-13  Score=105.66  Aligned_cols=130  Identities=18%  Similarity=0.046  Sum_probs=102.8

Q ss_pred             Hhhhcchh-cccCCCchhHHHHHHHHHHHHHHHHHHHhhhhccccchhHHH-----HHHHHHHHHHHHHHHHH-------
Q 030356           46 SFIGPAIK-SEWNLSPAQETLLTSVVFAGLLVGSYSWGFISDNYGRRKGLL-----GIAMLASVAGLLSAFSL-------  112 (179)
Q Consensus        46 ~~~~~~~~-~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~d~~G~r~~~~-----~~~~~~~~~~~~~~~~~-------  112 (179)
                      ....+.+. +.++.+..+.++..+...++..++.++.+++.||+|||+...     .+..+.+++.++.....       
T Consensus       303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  382 (491)
T 4aps_A          303 SVVLATFAAERVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTAWKKNQPSSPTKFAVGLMFAGLSFLLMAIPGALYGTSG  382 (491)
T ss_dssp             GTHHHHHHHHSCCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHHTTTC---CHHHHHHHHHHHHHHHTTTHHHHHHCCCCT
T ss_pred             cHHHHHHHHHHhccCccCHHHHhccchHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence            33334444 446767677888888999999999999999999999987654     66666666666555543       


Q ss_pred             --HHHHHHHHHHHHHhhcCch-hhHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 030356          113 --NYLSLVTLRGLVGIGLGSG-PVCLSWFLEFIPASNRGMWMVVISIFWTLGTIFEAALAWGNILL  175 (179)
Q Consensus       113 --~~~~~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~~~~  175 (179)
                        +...+.+..++.|++.+.. +....++.|.+|+++|+++.++++....+|..++|.+.+++.+.
T Consensus       383 ~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~i~~~~~~~~~~~  448 (491)
T 4aps_A          383 KVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAFNSQMMSMWFLSSSVGSALNAQLVTLYNAK  448 (491)
T ss_dssp             TCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTCSSSSTHHHHHHHHHHHHHHHHHGGGGGGS
T ss_pred             CccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence              5566777788899998887 88899999999999999999999999999999999999887764

>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*

Probab=99.38  E-value=6.3e-12  Score=97.18  Aligned_cols=138  Identities=17%  Similarity=0.129  Sum_probs=100.7

Q ss_pred             HHHHHHHHHHHHhhhcchhcccCCCchhHHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHHHHHHHH--
Q 030356           35 LVAEAMEIMILSFIGPAIKSEWNLSPAQETLLTSVVFAGLLVGSYSWGFISDNYGRRKGLLGIAMLASVAGLLSAFSL--  112 (179)
Q Consensus        35 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~d~~G~r~~~~~~~~~~~~~~~~~~~~~--  112 (179)
                      .+...........+.+.+.++.+.+..+.........+...++.++.+++.||+|||+.++.+.....++.+......  
T Consensus       286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~~~  365 (491)
T 4gc0_A          286 IFQQFVGINVVLYYAPEVFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYT  365 (491)
T ss_dssp             HHHHHTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHhhhhHHHhcchHHHHhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHHHHHHhc
Confidence            333444445555666778888888888888888888999999999999999999999999988888777766554321  


Q ss_pred             ---HHHHH-HHHHHHHHhhcCchhhHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 030356          113 ---NYLSL-VTLRGLVGIGLGSGPVCLSWFLEFIPASNRGMWMVVISIFWTLGTIFEAALAWGN  172 (179)
Q Consensus       113 ---~~~~~-~~~~~l~G~~~g~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~  172 (179)
                         +...+ ....+..+...+..+..+.+.+|.+|.+.|++++++.+....+++.+++.+...+
T Consensus       366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l  429 (491)
T 4gc0_A          366 QAPGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMM  429 (491)
T ss_dssp             TCCHHHHHHHHHHHHHHHHTTTTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHH
T ss_pred             ccchHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence               11112 2222233333333377788999999999999999999988888888877665443

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}

Probab=98.72  E-value=1.5e-09  Score=84.56  Aligned_cols=113  Identities=10%  Similarity=0.070  Sum_probs=84.7

Q ss_pred             hHHHHHHHHHHHHHHHHHHHhhhh----ccccch----hHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHH
Q 030356           62 QETLLTSVVFAGLLVGSYSWGFIS----DNYGRR----KGLLGIAMLASVAGLLSAFS---------LNYLSLVTLRGLV  124 (179)
Q Consensus        62 ~~~~~~~~~~~~~~i~~~~~g~l~----d~~G~r----~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~l~  124 (179)
                      ..+.+.....++..+..++.+++.    ||.|+|    +.+..+.++.+++.++..+.         .+.+.+.+..++.
T Consensus       336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  415 (524)
T 2xut_A          336 EPAMMQALNPLLVMLLIPFNNFVLYPAIERMGVKLTALRKMGAGIAITGLSWIVVGTIQLMMDGGSALSIFWQILPYALL  415 (524)
T ss_dssp             CHHHHHTTSGGGHHHHGGGTTTC------------CCHHHHHTHHHHHHHHHHTTTTTTTTTTTTCCCCSHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHhHHHHHhhhHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCHHHHHHHHHHH
Confidence            456666666677777888877765    555432    45666777776666655543         2556667778899


Q ss_pred             HhhcCch-hhHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 030356          125 GIGLGSG-PVCLSWFLEFIPASNRGMWMVVISIFWTLGTIFEAALAWGNIL  174 (179)
Q Consensus       125 G~~~g~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~~~  174 (179)
                      |++.+.. +....++.|..|+++|++++++++....+|..++|.+.+.+.+
T Consensus       416 g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~~~~  466 (524)
T 2xut_A          416 TFGEVLVSATGLEFAYSQAPKAMKGTIMSFWTLSVTVGNLWVLLANVSVKS  466 (524)
T ss_dssp             HHHHHHHHHHHTTTHHHHCCTTCCTTTHHHHGGGHHHHHHHHHHHHHHTTS
T ss_pred             HHHHHHHHHHHHHHHHHhCcHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            9998888 8888999999999999999999999999999999999998876

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	179
d1pw4a_	447	f.38.1.1 (A:) Glycerol-3-phosphate transporter {Es	9e-07
d1pv7a_	417	f.38.1.2 (A:) Lactose permease {Escherichia coli [	2e-04

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} Length = 447

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

 Score = 45.8 bits (107), Expect = 9e-07
 Identities = 24/159 (15%), Positives = 46/159 (28%), Gaps = 6/159 (3%)

Query: 20  FGKFQILVLIYAGLGLVAEAMEIMILSFIGPAIKSEWNLSPAQETLLTSVVFAGLLVGSY 79
           + + +  + +    G  A  +     +   P +  E   S        S +        +
Sbjct: 19  YRRLRWQIFLGIFFGYAAYYLVRKNFALAMPYLV-EQGFSRGDLGFALSGISIAYGFSKF 77

Query: 80  SWGFISDNYGRRKGLLGIAMLASVAGLL----SAFSLNYLSLVTLRGLVGIGL-GSGPVC 134
             G +SD    R  L    +LA+   L        + +   +  L  L G       P C
Sbjct: 78  IMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPC 137

Query: 135 LSWFLEFIPASNRGMWMVVISIFWTLGTIFEAALAWGNI 173
               + +     RG  + V +    +G      L    +
Sbjct: 138 GRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGM 176

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} Length = 417

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

 Score = 38.6 bits (88), Expect = 2e-04
 Identities = 17/133 (12%), Positives = 35/133 (26%)

Query: 43  MILSFIGPAIKSEWNLSPAQETLLTSVVFAGLLVGSYSWGFISDNYGRRKGLLGIAMLAS 102
               F    +    ++S +   ++ + +    L+    +G +SD  G RK LL I     
Sbjct: 25  AYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGML 84

Query: 103 VAGLLSAFSLNYLSLVTLRGLVGIGLGSGPVCLSWFLEFIPASNRGMWMVVISIFWTLGT 162
           V        +    L     +  I  G               +         +  +    
Sbjct: 85  VMFAPFFIFIFGPLLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRAR 144

Query: 163 IFEAALAWGNILL 175
           +F          +
Sbjct: 145 MFGCVGWALGASI 157

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	179
d1pw4a_	447	Glycerol-3-phosphate transporter {Escherichia coli	99.91
d1pv7a_	417	Lactose permease {Escherichia coli [TaxId: 562]}	99.65
d1pv7a_	417	Lactose permease {Escherichia coli [TaxId: 562]}	99.53
d1pw4a_	447	Glycerol-3-phosphate transporter {Escherichia coli	99.51

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

Probab=99.91  E-value=1.3e-24  Score=163.97  Aligned_cols=158  Identities=17%  Similarity=0.119  Sum_probs=140.0

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhcccCCCchhHHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHH
Q 030356           21 GKFQILVLIYAGLGLVAEAMEIMILSFIGPAIKSEWNLSPAQETLLTSVVFAGLLVGSYSWGFISDNYGRRKGLLGIAML  100 (179)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~d~~G~r~~~~~~~~~  100 (179)
                      ++.+|.++..++++++..+.+....+...|.+. |+|+|++|.+++.+++.++..+++++.|+++||+|||+++..+.++
T Consensus        20 ~~~~w~i~~~~~~~~~~~~~~~~~~~~~~p~~~-~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~~   98 (447)
T d1pw4a_          20 RRLRWQIFLGIFFGYAAYYLVRKNFALAMPYLV-EQGFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLIL   98 (447)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTSHHHHHHHTT-SSTTCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHH
Confidence            456778888888888888888777787778765 6899999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHH----HHHHHHHHHHHHHhhcCch-hhHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 030356          101 ASVAGLLSAFSL----NYLSLVTLRGLVGIGLGSG-PVCLSWFLEFIPASNRGMWMVVISIFWTLGTIFEAALAWGNILL  175 (179)
Q Consensus       101 ~~~~~~~~~~~~----~~~~~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~~~~  175 (179)
                      .+++.+++++.+    ++..+++.|++.|++.+.. +....++.|++|+++|++++++++....+|..++|.+++.+.+.
T Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~  178 (447)
T d1pw4a_          99 AAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAW  178 (447)
T ss_dssp             HHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHH
T ss_pred             HHHHHhhccccchhhhhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhhcccccccccccccchhhhhhhhhhhhHhhh
Confidence            999988877654    5678899999999999988 88999999999999999999999999999999999999988776


Q ss_pred             CCCC
Q 030356          176 NSKN  179 (179)
Q Consensus       176 ~~~~  179 (179)
                      .++|
T Consensus       179 ~~~w  182 (447)
T d1pw4a_         179 FNDW  182 (447)
T ss_dssp             TCCS
T ss_pred             hhcc
Confidence            5544

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

Probab=99.65  E-value=6.8e-16  Score=113.71  Aligned_cols=132  Identities=16%  Similarity=0.052  Sum_probs=115.4

Q ss_pred             HhhhcchhcccCCCchhHHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030356           46 SFIGPAIKSEWNLSPAQETLLTSVVFAGLLVGSYSWGFISDNYGRRKGLLGIAMLASVAGLLSAFSLNYLSLVTLRGLVG  125 (179)
Q Consensus        46 ~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~d~~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G  125 (179)
                      ....+...++.+.+....+...+...++..++..+.+++.||+|+|+.+..+..+.++..+...+.++.+.+.+..++.|
T Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g  323 (417)
T d1pv7a_         244 ANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHM  323 (417)
T ss_dssp             HHHHTTSSSCHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHH
T ss_pred             cccccccccccccchhhhcccccccccccccchhhhhhhhcccccccchhhhHHHHHHhhhccccccccchhhHHHHHHH
Confidence            33334445555567778888999999999999999999999999999999999999999998888889999999999999


Q ss_pred             hhcCch-hhHHHHHHHhccccchhHHHHH-HHHHHHHHHHHHHHHHHHHhccCC
Q 030356          126 IGLGSG-PVCLSWFLEFIPASNRGMWMVV-ISIFWTLGTIFEAALAWGNILLNS  177 (179)
Q Consensus       126 ~~~g~~-~~~~~~~~~~~~~~~r~~~~~~-~~~~~~~g~~~~~~i~~~~~~~~~  177 (179)
                      ++.+.. +...+++.|.+|+++|++..++ ++....+|..++|.+++++.+..|
T Consensus       324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~G~l~~~~g  377 (417)
T d1pv7a_         324 FEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIG  377 (417)
T ss_dssp             HHHHHHHHHHHHHHHHHSCGGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence            999888 8889999999999999999998 467788999999999999988654

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

Probab=99.53  E-value=4e-14  Score=104.06  Aligned_cols=141  Identities=16%  Similarity=0.007  Sum_probs=98.9

Q ss_pred             HHHHHHHHHHHHhhhcc-hhcccCCCchhHHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHHHHHHHHH
Q 030356           35 LVAEAMEIMILSFIGPA-IKSEWNLSPAQETLLTSVVFAGLLVGSYSWGFISDNYGRRKGLLGIAMLASVAGLLSAFSLN  113 (179)
Q Consensus        35 ~~~~~~~~~~~~~~~~~-~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~d~~G~r~~~~~~~~~~~~~~~~~~~~~~  113 (179)
                      .+..........+..|. +.+++|.|+++.|++.++..++..+++++.|+++||+|||++++.+.....++........+
T Consensus        16 ~f~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~grr~~l~~~~~~~~~~~~~~~~~~~   95 (417)
T d1pv7a_          16 FFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIF   95 (417)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTCTHHHHHHHHHHHTHHHHHHHTH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHhhh
Confidence            34444444555555554 56779999999999999999999999999999999999999999998888888877776655


Q ss_pred             HHHH----HHHHHHHHhhcCch-hhHHHHHHHhccc--cchhHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 030356          114 YLSL----VTLRGLVGIGLGSG-PVCLSWFLEFIPA--SNRGMWMVVISIFWTLGTIFEAALAWGNILL  175 (179)
Q Consensus       114 ~~~~----~~~~~l~G~~~g~~-~~~~~~~~~~~~~--~~r~~~~~~~~~~~~~g~~~~~~i~~~~~~~  175 (179)
                      ....    .+.+.+.+.+.+.. ........+..++  +++....+........+..++|.+++.+.+.
T Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  164 (417)
T d1pv7a_          96 GPLLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFTI  164 (417)
T ss_dssp             HHHHHTTCHHHHHHTTTTGGGGGTTHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhHHHHHHHHHHHhhhcccccccchhhcccccccchhhhhHHHHHHHhhhhccccccccccccccccc
Confidence            4433    33444444444443 3333333333222  3345566677778888888888888887654

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

Probab=99.51  E-value=3.6e-13  Score=100.62  Aligned_cols=135  Identities=13%  Similarity=0.050  Sum_probs=103.3

Q ss_pred             HHHHhhhcchhcccCCCchhHHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHHHHHH-----HHHHHHH
Q 030356           43 MILSFIGPAIKSEWNLSPAQETLLTSVVFAGLLVGSYSWGFISDNYGRRKGLLGIAMLASVAGLLSAF-----SLNYLSL  117 (179)
Q Consensus        43 ~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~d~~G~r~~~~~~~~~~~~~~~~~~~-----~~~~~~~  117 (179)
                      ........++.++++.+..+.++..+...++..++.++.|++.||++||+..........+.......     ..+....
T Consensus       267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  346 (447)
T d1pw4a_         267 GILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTVD  346 (447)
T ss_dssp             HHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTSCCTTCHHHH
T ss_pred             cchhhhhhhcccccccccchhhhhhhcchhhhhhhhhhhhhhhhhccccccccccchhHHHHHHHHHHHHhcccccHHHH
Confidence            33344445566678999999999999999999999999999999999887554443333322222211     3455666


Q ss_pred             HHHHHHHHhhcCch-hhHHHHHHHhccccchhHHHHHHHHHHHH-HHHHHHHHHHHHhccCC
Q 030356          118 VTLRGLVGIGLGSG-PVCLSWFLEFIPASNRGMWMVVISIFWTL-GTIFEAALAWGNILLNS  177 (179)
Q Consensus       118 ~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~-g~~~~~~i~~~~~~~~~  177 (179)
                      .+..++.|++.+.. +....+..|.+|++.|+++.++.+....+ |..++|.+.+++.+..|
T Consensus       347 ~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~g~~~~~~~~g~~~~~~g  408 (447)
T d1pw4a_         347 MICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFG  408 (447)
T ss_dssp             HHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            77778888888877 77888999999999999999998877776 56778999999988765