Citrus Sinensis ID: 030369

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------18
Protein Sequence
MFTNNQRQEERTGRSGTPRLQYLQELVSQFQNSTDEERKEKIVANLANFAYDPYNYTFLRQLNVLELFLDCITEPNEKLVEFGVGGICNASVDPANAAIITKSGGIPLIIECLSSPVRNTVNHALGALYYLCSMSTKEEILKPEVVDVIRRYAAAESVNVSFSNLAKAFLDKHVTENK
Secondary Structure (PSIPRED)
ccccHHHHHHHHcccccccHHHHHHHHHHHcccccHHHHHHHHHHHHHccccHHHHHHHHHcccHHHHHHHHccccHHHHHHHHHHHHHHcccHHHHHHHHHcccHHHHHHHcccccHHHHHHHHHHHHHHcccHHHHHHcccHHHHHHHHHHHcccccHHHHHHHHHHHHHHccccc
Secondary Structure Prediction (SSPRO)
ccccHHHHHHHcccccccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHcccHHHHHHHHHccccHHHHHHHccccHHHHHHHHHHHHHHcccccHHHHccHHHHHHHHHHHHcccccHHHHHHHHHHHHHHccccc
Coil and Loop (DISEMBL)
mftnnqrqeertgrsgtprLQYLQELVSQFQNSTDEERKEKIVANLANfaydpynyTFLRQLNVLELFLDCitepneklvefgvggicnasvdpanAAIItksggipliieclsspvrntVNHALGALYYLCsmstkeeilkpEVVDVIRRYAAAESVNVSFSNLAKAFLDKHVTENK
Flexible Loop (DISEMBL)
mftnnqrqeertgrsgtprlQYLQELVSQFQNSTDEERKEKIVANLANFAYDPYNYTFLRQLNVLELFLDCITEPNEKLVEFGVGGICNASVDPANAAIITKSGGIPLIIECLSSPVRNTVNHALGALYYLCSMSTKEEILKPEVVDVIRRYAAAESVNVSFSNLAkafldkhvtenk
Low Complexity Region (SEG)
MFTNNQRQEERTGRSGTPRLQYLQELVSQFQNSTDEERKEKIVANLANFAYDPYNYTFLRQLNVLELFLDCITEPNEKLVEFGVGGICNASVDPANAAIITKSGGIPLIIECLSSPVRNTVNHALGALYYLCSMSTKEEILKPEVVDVIRRYAAAESVNVSFSNLAKAFLDKHVTENK
Disordered region (IsUnstruct)
****************************************KIVANLANFAYDPYNYTFLRQLNVLELFLDCITEPNEKLVEFGVGGICNASVDPANAAIITKSGGIPLIIECLSSPVRNTVNHALGALYYLCSMSTKEEILKPEVVDVIRRYAAAESVNVSFSNLAKAFLD*******
Disordered Region (DISOPRED)
***********************QELVSQFQNSTDEERKEKIVANLANFAYDPYNYTFLRQLNVLELFLDCITEPNEKLVEFGVGGICNASVDPANAAIITKSGGIPLIIECLSSPVRNTVNHALGALYYLCSMSTKEEILKPEVVDVIR*************NLAKAFLDKHVT***
Disordered Region (DISEMBL)
***************GTPRLQYLQELVSQF********KEKIVANLANFAYDPYNYTFLRQLNVLELFLDCITEPNEKLVEFGVGGICNASVDPANAAIITKSGGIPLIIECLSSPVRNTVNHALGALYYLCSMSTKEEILKPEVVDVIRRYAAAESVNVSFSNLAKAFLDKHVTENK
Disordered Region (DISPRO)
**************SGTPRLQYLQELVSQFQNSTDEERKEKIVANLANFAYDPYNYTFLRQLNVLELFLDCITEPNEKLVEFGVGGICNASVDPANAAIITKSGGIPLIIECLSSPVRNTVNHALGALYYLCSMSTKEEILKPEVVDVIRRYAAAESVNVSFSNLAKAFLDKHVTE**
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MFTNNQRQEERTGRSGTPRLQYLQELVSQFQNSTDEERKEKIVANLANFAYDPYNYTFLRQLNVLELFLDCITEPNEKLVEFGVGGICNASVDPANAAIITKSGGIPLIIECLSSPVRNTVNHALGALYYLCSMSTKEEILKPEVVDVIRRYAAAESVNVSFSNLAKAFLDKHVTENK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	178	2.2.26 [Sep-21-2011]
Q3UJZ3	198	Armadillo repeat-containi	yes	no	0.887	0.797	0.450	6e-34
Q9H6L4	198	Armadillo repeat-containi	yes	no	0.848	0.762	0.483	4e-33

>sp|Q3UJZ3|ARMC7_MOUSE Armadillo repeat-containing protein 7 OS=Mus musculus GN=Armc7 PE=2 SV=2

 Score =  143 bits (361), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 73/162 (45%), Positives = 107/162 (66%), Gaps = 4/162 (2%)

Query: 19  RLQYLQELVSQFQNSTDEERKEKIVANLANFAYDPYNYTFLRQLNVLELFLDCITEPNEK 78
           RL YLQ LV++FQ +  ++ KE+++ANLANFAYDP NY +LRQL VL+LFLD ++E NE 
Sbjct: 13  RLGYLQALVTEFQETESQDAKEQVLANLANFAYDPGNYQYLRQLQVLDLFLDSLSEENET 72

Query: 79  LVEFGVGGICNASVDPANAAIITKSGGIPLIIECLSSPVRNTVNHALGALYYLCSMSTKE 138
           L++F +GG+CN   D AN   + ++GG+PLII CLSSP   TV  A+  L YL S  ++ 
Sbjct: 73  LIKFAIGGLCNLCADKANKEHVLQAGGLPLIIGCLSSPDEETVLSAVTTLMYLSSPGSRS 132

Query: 139 --EILKPEVVDVIRRYAAAESVNVSFSNLAKAFLDKHVTENK 178
             E+    VV  + R++ + S  +   NLA+ FL+   + ++
Sbjct: 133 HPELTSLPVVQCMLRFSISASTRL--RNLAQIFLEDFCSPSQ 172

Mus musculus (taxid: 10090)

>sp|Q9H6L4|ARMC7_HUMAN Armadillo repeat-containing protein 7 OS=Homo sapiens GN=ARMC7 PE=1 SV=1

 Score =  140 bits (354), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 75/155 (48%), Positives = 101/155 (65%), Gaps = 4/155 (2%)

Query: 19  RLQYLQELVSQFQNSTDEERKEKIVANLANFAYDPYNYTFLRQLNVLELFLDCITEPNEK 78
           RL YLQ LV++FQ +  ++ KE+++ANLANFAYDP NY +LRQL VL+LFLD ++E NE 
Sbjct: 13  RLGYLQALVTEFQETQSQDAKEQVLANLANFAYDPSNYEYLRQLQVLDLFLDSLSEENET 72

Query: 79  LVEFGVGGICNASVDPANAAIITKSGGIPLIIECLSSPVRNTVNHALGALYYLC--SMST 136
           LVEF +GG+CN   D AN   I  +GG+PLII CLSSP   TV  A+  L +L     S 
Sbjct: 73  LVEFAIGGLCNLCPDRANKEHILHAGGVPLIINCLSSPNEETVLSAITTLMHLSPPGRSF 132

Query: 137 KEEILKPEVVDVIRRYAAAESVNVSFSNLAKAFLD 171
             E+    VV  + R++ + S  +   NLA+ FL+
Sbjct: 133 LPELTATPVVQCMLRFSLSASARL--RNLAQIFLE 165

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	178
224054220	178	predicted protein [Populus trichocarpa]	1.0	1.0	0.876	2e-88
357491793	178	Armadillo repeat-containing protein [Med	0.994	0.994	0.802	3e-81
225466251	177	PREDICTED: armadillo repeat-containing p	0.988	0.994	0.806	5e-81
15240175	180	armadillo/beta-catenin-like repeat-conta	0.994	0.983	0.810	3e-80
21618145	180	unknown [Arabidopsis thaliana]	0.994	0.983	0.810	4e-80
297805232	180	armadillo/beta-catenin repeat family pro	0.994	0.983	0.804	1e-79
363807054	178	uncharacterized protein LOC100790639 [Gl	0.994	0.994	0.779	2e-79
255564444	172	Armadillo repeat-containing protein, put	0.966	1.0	0.788	2e-78
186527111	179	armadillo/beta-catenin-like repeat-conta	0.988	0.983	0.804	3e-78
242034989	176	hypothetical protein SORBIDRAFT_01g02830	0.977	0.988	0.793	4e-78

>gi|224054220|ref|XP_002298151.1| predicted protein [Populus trichocarpa] gi|222845409|gb|EEE82956.1| predicted protein [Populus trichocarpa]

 Score =  329 bits (844), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 156/178 (87%), Positives = 170/178 (95%)

Query: 1   MFTNNQRQEERTGRSGTPRLQYLQELVSQFQNSTDEERKEKIVANLANFAYDPYNYTFLR 60
           MFTNNQRQEERTG+ GTPRLQYLQELV+QFQN+ DEERKE+IVANLANFAYDPYNYTFLR
Sbjct: 1   MFTNNQRQEERTGKYGTPRLQYLQELVNQFQNAADEERKERIVANLANFAYDPYNYTFLR 60

Query: 61  QLNVLELFLDCITEPNEKLVEFGVGGICNASVDPANAAIITKSGGIPLIIECLSSPVRNT 120
           QLNVLELFLDCITEPNEKLVEFG+GGICN+  DPANAAIIT+SGGIPL I+CLSSPVRNT
Sbjct: 61  QLNVLELFLDCITEPNEKLVEFGIGGICNSCDDPANAAIITQSGGIPLTIQCLSSPVRNT 120

Query: 121 VNHALGALYYLCSMSTKEEILKPEVVDVIRRYAAAESVNVSFSNLAKAFLDKHVTENK 178
           VN+ALG+LYYLC+ STKEEILKPEV+DVI+RYAA E+VNVSFSNLAKAFLDKHV ENK
Sbjct: 121 VNYALGSLYYLCNSSTKEEILKPEVLDVIKRYAACETVNVSFSNLAKAFLDKHVYENK 178

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357491793|ref|XP_003616184.1| Armadillo repeat-containing protein [Medicago truncatula] gi|355517519|gb|AES99142.1| Armadillo repeat-containing protein [Medicago truncatula] gi|388504388|gb|AFK40260.1| unknown [Medicago truncatula]

 Score =  306 bits (783), Expect = 3e-81,   Method: Compositional matrix adjust.
 Identities = 142/177 (80%), Positives = 163/177 (92%)

Query: 1   MFTNNQRQEERTGRSGTPRLQYLQELVSQFQNSTDEERKEKIVANLANFAYDPYNYTFLR 60
           MFTNNQRQ ERTGR GT RLQYLQELV+QFQNS+++E KEKI+ANLANFAYDPYN+ FLR
Sbjct: 1   MFTNNQRQLERTGRYGTSRLQYLQELVTQFQNSSEDEIKEKILANLANFAYDPYNFNFLR 60

Query: 61  QLNVLELFLDCITEPNEKLVEFGVGGICNASVDPANAAIITKSGGIPLIIECLSSPVRNT 120
           QLNVLELFLDC+TEPNEK++EFGVGGICN+ VDPANA I+   GGIPLII+CLSSPVRNT
Sbjct: 61  QLNVLELFLDCVTEPNEKIIEFGVGGICNSCVDPANATIVAGVGGIPLIIQCLSSPVRNT 120

Query: 121 VNHALGALYYLCSMSTKEEILKPEVVDVIRRYAAAESVNVSFSNLAKAFLDKHVTEN 177
           VN+ALGALYY+C+ S KEE+LKPEV+DVI+RYAAAE V+VSFSNLAKAFLDKH++ N
Sbjct: 121 VNYALGALYYICNESNKEEVLKPEVIDVIKRYAAAEEVSVSFSNLAKAFLDKHLSRN 177

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225466251|ref|XP_002270403.1| PREDICTED: armadillo repeat-containing protein 7 [Vitis vinifera] gi|297738150|emb|CBI27351.3| unnamed protein product [Vitis vinifera]

 Score =  305 bits (780), Expect = 5e-81,   Method: Compositional matrix adjust.
 Identities = 142/176 (80%), Positives = 162/176 (92%)

Query: 1   MFTNNQRQEERTGRSGTPRLQYLQELVSQFQNSTDEERKEKIVANLANFAYDPYNYTFLR 60
           MFTN +RQEERTGR GTPR+QYLQELVSQFQN+T+EE KE+I ANLANFAYDPYNY FLR
Sbjct: 1   MFTNKRRQEERTGRYGTPRVQYLQELVSQFQNATNEETKERIAANLANFAYDPYNYNFLR 60

Query: 61  QLNVLELFLDCITEPNEKLVEFGVGGICNASVDPANAAIITKSGGIPLIIECLSSPVRNT 120
           QLNVLELFLDCITEPNEKLVEFGVGGICN+  DP NAA+IT  GGIPLII+CLSSPVRNT
Sbjct: 61  QLNVLELFLDCITEPNEKLVEFGVGGICNSCADPENAAVITNCGGIPLIIQCLSSPVRNT 120

Query: 121 VNHALGALYYLCSMSTKEEILKPEVVDVIRRYAAAESVNVSFSNLAKAFLDKHVTE 176
           VN+ +GALYY+C+ S KEEI++PEVVDVI++YAAA SV+V+FSNLAKAFLDKHV++
Sbjct: 121 VNYGIGALYYICNESNKEEIVRPEVVDVIKKYAAAGSVSVNFSNLAKAFLDKHVSQ 176

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15240175|ref|NP_198545.1| armadillo/beta-catenin-like repeat-containing protein [Arabidopsis thaliana] gi|9758715|dbj|BAB09101.1| unnamed protein product [Arabidopsis thaliana] gi|98960935|gb|ABF58951.1| At5g37290 [Arabidopsis thaliana] gi|332006778|gb|AED94161.1| armadillo/beta-catenin-like repeat-containing protein [Arabidopsis thaliana]

 Score =  302 bits (774), Expect = 3e-80,   Method: Compositional matrix adjust.
 Identities = 145/179 (81%), Positives = 161/179 (89%), Gaps = 2/179 (1%)

Query: 1   MFTNNQRQEERTGRSGTPRLQYLQELVSQFQNSTDEERKEKIVANLANFAYDPYNYTFLR 60
           MFTNNQRQEERTG+ GTPRLQYLQELVSQFQN+TDEE KE+IVANLANFAYDPYNYT LR
Sbjct: 1   MFTNNQRQEERTGKHGTPRLQYLQELVSQFQNATDEETKERIVANLANFAYDPYNYTILR 60

Query: 61  QLNVLELFLDCITEPNEKLVEFGVGGICNASVDPANAAIITKSGGIPLIIECLSSPVRNT 120
           QLNVLELF+DCITEPNEKLVEFG+GGICNA  +P N A I ++ GIPLII+ LSSPVRNT
Sbjct: 61  QLNVLELFVDCITEPNEKLVEFGIGGICNACAEPKNVATIVEADGIPLIIKSLSSPVRNT 120

Query: 121 VNHALGALYYLCSM--STKEEILKPEVVDVIRRYAAAESVNVSFSNLAKAFLDKHVTEN 177
           VN+ALGALYY+C    +T+EEIL+PEVVD+I RYAAAESV+VSFSNLAKAFLDKHV  N
Sbjct: 121 VNYALGALYYMCDYNRATREEILRPEVVDLIERYAAAESVSVSFSNLAKAFLDKHVHAN 179

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|21618145|gb|AAM67195.1| unknown [Arabidopsis thaliana]

 Score =  302 bits (773), Expect = 4e-80,   Method: Compositional matrix adjust.
 Identities = 145/179 (81%), Positives = 161/179 (89%), Gaps = 2/179 (1%)

Query: 1   MFTNNQRQEERTGRSGTPRLQYLQELVSQFQNSTDEERKEKIVANLANFAYDPYNYTFLR 60
           MFTNNQRQEERTG+ GTPRLQYLQELVSQFQN+TDEE KEKIVANLANFAYDPYNYT LR
Sbjct: 1   MFTNNQRQEERTGKHGTPRLQYLQELVSQFQNATDEETKEKIVANLANFAYDPYNYTILR 60

Query: 61  QLNVLELFLDCITEPNEKLVEFGVGGICNASVDPANAAIITKSGGIPLIIECLSSPVRNT 120
           QLNVLELF+DC+TEPNEKLVEFG+GGICNA  +P N A I ++ GIPLII+ LSSPVRNT
Sbjct: 61  QLNVLELFVDCLTEPNEKLVEFGIGGICNACAEPKNVATIVEADGIPLIIKSLSSPVRNT 120

Query: 121 VNHALGALYYLCSM--STKEEILKPEVVDVIRRYAAAESVNVSFSNLAKAFLDKHVTEN 177
           VN+ALGALYY+C    +T+EEIL+PEVVD+I RYAAAESV+VSFSNLAKAFLDKHV  N
Sbjct: 121 VNYALGALYYICDYNRATREEILRPEVVDLIERYAAAESVSVSFSNLAKAFLDKHVHAN 179

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297805232|ref|XP_002870500.1| armadillo/beta-catenin repeat family protein [Arabidopsis lyrata subsp. lyrata] gi|297316336|gb|EFH46759.1| armadillo/beta-catenin repeat family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  300 bits (769), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 144/179 (80%), Positives = 159/179 (88%), Gaps = 2/179 (1%)

Query: 1   MFTNNQRQEERTGRSGTPRLQYLQELVSQFQNSTDEERKEKIVANLANFAYDPYNYTFLR 60
           MFTNNQRQEERTG+ GTPRLQYLQELVSQFQN+TDEE KE+IVANLANFAYDPYNYT LR
Sbjct: 1   MFTNNQRQEERTGKHGTPRLQYLQELVSQFQNATDEETKERIVANLANFAYDPYNYTILR 60

Query: 61  QLNVLELFLDCITEPNEKLVEFGVGGICNASVDPANAAIITKSGGIPLIIECLSSPVRNT 120
           QLNVLELF+DCITEPNEKLVEFG+GG+CNA  +P N A I +  GIP II+CLSSPVRNT
Sbjct: 61  QLNVLELFVDCITEPNEKLVEFGIGGLCNACAEPKNVATIVEVDGIPFIIKCLSSPVRNT 120

Query: 121 VNHALGALYYLCSM--STKEEILKPEVVDVIRRYAAAESVNVSFSNLAKAFLDKHVTEN 177
           VN+ALGALYY+C    +T+EEILK EVVD+I RYAAAESV+VSFSNLAKAFLDKHV  N
Sbjct: 121 VNYALGALYYMCDYNRATREEILKAEVVDLIERYAAAESVSVSFSNLAKAFLDKHVHTN 179

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|363807054|ref|NP_001242327.1| uncharacterized protein LOC100790639 [Glycine max] gi|255647064|gb|ACU24000.1| unknown [Glycine max]

 Score =  299 bits (766), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 138/177 (77%), Positives = 164/177 (92%)

Query: 1   MFTNNQRQEERTGRSGTPRLQYLQELVSQFQNSTDEERKEKIVANLANFAYDPYNYTFLR 60
           MFTN+QRQ+ RTGR GT R+++LQ+LV+QFQN++++E +EKI+ANLANFAYDPYNY FLR
Sbjct: 1   MFTNDQRQQGRTGRYGTSRVEFLQKLVTQFQNTSEDETREKILANLANFAYDPYNYNFLR 60

Query: 61  QLNVLELFLDCITEPNEKLVEFGVGGICNASVDPANAAIITKSGGIPLIIECLSSPVRNT 120
           QLNVLELF+DC+TEPNEKLVEFG+GGICN+ VDPAN+AI+T  GGIPLII+CLSSPVRNT
Sbjct: 61  QLNVLELFVDCLTEPNEKLVEFGIGGICNSCVDPANSAIVTTFGGIPLIIQCLSSPVRNT 120

Query: 121 VNHALGALYYLCSMSTKEEILKPEVVDVIRRYAAAESVNVSFSNLAKAFLDKHVTEN 177
           VN+ALGALYY+C+ S KEEIL+PEVVDVIRRYAAAE V+VSFSNLAKAFL KH+ EN
Sbjct: 121 VNYALGALYYICNESNKEEILRPEVVDVIRRYAAAEEVSVSFSNLAKAFLSKHLAEN 177

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255564444|ref|XP_002523218.1| Armadillo repeat-containing protein, putative [Ricinus communis] gi|223537514|gb|EEF39139.1| Armadillo repeat-containing protein, putative [Ricinus communis]

 Score =  296 bits (758), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 138/175 (78%), Positives = 160/175 (91%), Gaps = 3/175 (1%)

Query: 1   MFTNNQRQEERTGRSGTPRLQYLQELVSQFQNSTDEERKEKIVANLANFAYDPYNYTFLR 60
           MFTNNQRQEER G+ GTPRLQYLQELVSQFQN++DEE KE+IVANLANFAYDPYNY FLR
Sbjct: 1   MFTNNQRQEERIGKYGTPRLQYLQELVSQFQNASDEETKERIVANLANFAYDPYNYVFLR 60

Query: 61  QLNVLELFLDCITEPNEKLVEFGVGGICNASVDPANAAIITKSGGIPLIIECLSSPVRNT 120
           QLNVLELFLDCITEPNEKLVEFG+GG+CN+  DPANAAIIT+SGGIPLII+CLSSPVRNT
Sbjct: 61  QLNVLELFLDCITEPNEKLVEFGIGGVCNSCADPANAAIITQSGGIPLIIQCLSSPVRNT 120

Query: 121 VNHALGALYYLCSMSTKEEILKPEVVDVIRRYAAAESVNVSFSNLAKAFLDKHVT 175
           VN+A+GALYYLC+ S KEEIL+PEV+DVI+RYAAAE+VN+   N++ A ++  +T
Sbjct: 121 VNYAIGALYYLCNSSNKEEILRPEVIDVIQRYAAAEAVNI---NMSPAIIETRIT 172

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|186527111|ref|NP_001119321.1| armadillo/beta-catenin-like repeat-containing protein [Arabidopsis thaliana] gi|332006779|gb|AED94162.1| armadillo/beta-catenin-like repeat-containing protein [Arabidopsis thaliana]

 Score =  296 bits (757), Expect = 3e-78,   Method: Compositional matrix adjust.
 Identities = 144/179 (80%), Positives = 160/179 (89%), Gaps = 3/179 (1%)

Query: 1   MFTNNQRQEERTGRSGTPRLQYLQELVSQFQNSTDEERKEKIVANLANFAYDPYNYTFLR 60
           MFTNNQRQEERTG+ GTPRLQYLQ LVSQFQN+TDEE KE+IVANLANFAYDPYNYT LR
Sbjct: 1   MFTNNQRQEERTGKHGTPRLQYLQ-LVSQFQNATDEETKERIVANLANFAYDPYNYTILR 59

Query: 61  QLNVLELFLDCITEPNEKLVEFGVGGICNASVDPANAAIITKSGGIPLIIECLSSPVRNT 120
           QLNVLELF+DCITEPNEKLVEFG+GGICNA  +P N A I ++ GIPLII+ LSSPVRNT
Sbjct: 60  QLNVLELFVDCITEPNEKLVEFGIGGICNACAEPKNVATIVEADGIPLIIKSLSSPVRNT 119

Query: 121 VNHALGALYYLCSM--STKEEILKPEVVDVIRRYAAAESVNVSFSNLAKAFLDKHVTEN 177
           VN+ALGALYY+C    +T+EEIL+PEVVD+I RYAAAESV+VSFSNLAKAFLDKHV  N
Sbjct: 120 VNYALGALYYMCDYNRATREEILRPEVVDLIERYAAAESVSVSFSNLAKAFLDKHVHAN 178

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|242034989|ref|XP_002464889.1| hypothetical protein SORBIDRAFT_01g028300 [Sorghum bicolor] gi|241918743|gb|EER91887.1| hypothetical protein SORBIDRAFT_01g028300 [Sorghum bicolor]

 Score =  295 bits (755), Expect = 4e-78,   Method: Compositional matrix adjust.
 Identities = 138/174 (79%), Positives = 158/174 (90%)

Query: 1   MFTNNQRQEERTGRSGTPRLQYLQELVSQFQNSTDEERKEKIVANLANFAYDPYNYTFLR 60
           MFTN QRQ ERTGRSGTPR QYLQ+LV+QFQ++TDEE KEKIVANLANFAYDP+NY F+R
Sbjct: 1   MFTNAQRQVERTGRSGTPRDQYLQDLVTQFQSATDEESKEKIVANLANFAYDPFNYAFMR 60

Query: 61  QLNVLELFLDCITEPNEKLVEFGVGGICNASVDPANAAIITKSGGIPLIIECLSSPVRNT 120
           QLNVLELFLDCITEPNE+LVEFG+GGICN+ VDPANA+IIT+ GGIPL+I+CLSSPVRNT
Sbjct: 61  QLNVLELFLDCITEPNERLVEFGIGGICNSCVDPANASIITQCGGIPLVIQCLSSPVRNT 120

Query: 121 VNHALGALYYLCSMSTKEEILKPEVVDVIRRYAAAESVNVSFSNLAKAFLDKHV 174
           V +ALGALYYLC+  TK+EILKP+VV  IR YA+A +VN SFSNLA AFL+KHV
Sbjct: 121 VTYALGALYYLCNSLTKKEILKPDVVRTIREYASAGAVNTSFSNLANAFLEKHV 174

Source: Sorghum bicolor

Species: Sorghum bicolor

Genus: Sorghum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	178
TAIR|locus:2169165	180	AT5G37290 [Arabidopsis thalian	0.994	0.983	0.810	1.9e-74
RGD|1310043	198	Armc7 "armadillo repeat contai	0.848	0.762	0.483	5.2e-33
MGI|MGI:2679719	198	Armc7 "armadillo repeat contai	0.848	0.762	0.470	1.4e-32
ZFIN|ZDB-GENE-060929-288	192	armc7 "armadillo repeat contai	0.910	0.843	0.457	1.8e-32
FB|FBgn0038425	286	CG14881 [Drosophila melanogast	0.842	0.524	0.269	1.9e-14

TAIR|locus:2169165 AT5G37290 [Arabidopsis thaliana (taxid:3702)]

 Score = 751 (269.4 bits), Expect = 1.9e-74, P = 1.9e-74
 Identities = 145/179 (81%), Positives = 162/179 (90%)

Query:     1 MFTNNQRQEERTGRSGTPRLQYLQELVSQFQNSTDEERKEKIVANLANFAYDPYNYTFLR 60
             MFTNNQRQEERTG+ GTPRLQYLQELVSQFQN+TDEE KE+IVANLANFAYDPYNYT LR
Sbjct:     1 MFTNNQRQEERTGKHGTPRLQYLQELVSQFQNATDEETKERIVANLANFAYDPYNYTILR 60

Query:    61 QLNVLELFLDCITEPNEKLVEFGVGGICNASVDPANAAIITKSGGIPLIIECLSSPVRNT 120
             QLNVLELF+DCITEPNEKLVEFG+GGICNA  +P N A I ++ GIPLII+ LSSPVRNT
Sbjct:    61 QLNVLELFVDCITEPNEKLVEFGIGGICNACAEPKNVATIVEADGIPLIIKSLSSPVRNT 120

Query:   121 VNHALGALYYLC--SMSTKEEILKPEVVDVIRRYAAAESVNVSFSNLAKAFLDKHVTEN 177
             VN+ALGALYY+C  + +T+EEIL+PEVVD+I RYAAAESV+VSFSNLAKAFLDKHV  N
Sbjct:   121 VNYALGALYYMCDYNRATREEILRPEVVDLIERYAAAESVSVSFSNLAKAFLDKHVHAN 179

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

RGD|1310043 Armc7 "armadillo repeat containing 7" [Rattus norvegicus (taxid:10116)]

 Score = 360 (131.8 bits), Expect = 5.2e-33, P = 5.2e-33
 Identities = 75/155 (48%), Positives = 103/155 (66%)

Query:    19 RLQYLQELVSQFQNSTDEERKEKIVANLANFAYDPYNYTFLRQLNVLELFLDCITEPNEK 78
             RL YLQ LV++FQ +  ++ KE+++ANLANFAYDP NY +LRQL VL+LFLD ++E NE 
Sbjct:    13 RLGYLQALVTEFQETESQDAKEQVLANLANFAYDPGNYQYLRQLQVLDLFLDSLSEENET 72

Query:    79 LVEFGVGGICNASVDPANAAIITKSGGIPLIIECLSSPVRNTVNHALGALYYLCSMSTKE 138
             L++F +GG+CN   D AN   I ++GG+P+II CLSSP   TV  A+  L YL S  T+ 
Sbjct:    73 LIKFAIGGLCNLCPDKANKEHILQAGGLPVIINCLSSPNEETVLSAVTTLMYLNSPGTRS 132

Query:   139 --EILKPEVVDVIRRYAAAESVNVSFSNLAKAFLD 171
               E+    VV  + R++   S N    NLA+ FL+
Sbjct:   133 HSELTSLPVVQCMLRFSL--STNTRLRNLAQIFLE 165

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

MGI|MGI:2679719 Armc7 "armadillo repeat containing 7" [Mus musculus (taxid:10090)]

 Score = 356 (130.4 bits), Expect = 1.4e-32, P = 1.4e-32
 Identities = 73/155 (47%), Positives = 104/155 (67%)

Query:    19 RLQYLQELVSQFQNSTDEERKEKIVANLANFAYDPYNYTFLRQLNVLELFLDCITEPNEK 78
             RL YLQ LV++FQ +  ++ KE+++ANLANFAYDP NY +LRQL VL+LFLD ++E NE 
Sbjct:    13 RLGYLQALVTEFQETESQDAKEQVLANLANFAYDPGNYQYLRQLQVLDLFLDSLSEENET 72

Query:    79 LVEFGVGGICNASVDPANAAIITKSGGIPLIIECLSSPVRNTVNHALGALYYLCSMSTKE 138
             L++F +GG+CN   D AN   + ++GG+PLII CLSSP   TV  A+  L YL S  ++ 
Sbjct:    73 LIKFAIGGLCNLCADKANKEHVLQAGGLPLIIGCLSSPDEETVLSAVTTLMYLSSPGSRS 132

Query:   139 --EILKPEVVDVIRRYAAAESVNVSFSNLAKAFLD 171
               E+    VV  + R++ + S  +   NLA+ FL+
Sbjct:   133 HPELTSLPVVQCMLRFSISASTRLR--NLAQIFLE 165

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

ZFIN|ZDB-GENE-060929-288 armc7 "armadillo repeat containing 7" [Danio rerio (taxid:7955)]

 Score = 355 (130.0 bits), Expect = 1.8e-32, P = 1.8e-32
 Identities = 75/164 (45%), Positives = 105/164 (64%)

Query:    15 SGTPRLQYLQELVSQFQNSTDEERKEKIVANLANFAYDPYNYTFLRQLNVLELFLDCITE 74
             S + R +YLQ LV++FQ+S  +E KE+++ANLANFAYDP N   LR L V ELFLD +TE
Sbjct:     8 SVSDRFEYLQGLVTEFQDSDSDEAKEQVLANLANFAYDPSNMEALRTLQVTELFLDMLTE 67

Query:    75 PNEKLVEFGVGGICNASVDPANAAIITKSGGIPLIIECLSSPVRNTVNHALGALYYLCSM 134
              NE  VEFG+GG+CN S++  +   I +SGG+PL+I CLSS    TV  A+  L  L + 
Sbjct:    68 ENENFVEFGIGGLCNLSMELESRDQILQSGGVPLVISCLSSSRDETVLSAITTLMNLITA 127

Query:   135 STKEEILKPEVVDVIRRYAAAESVNVSFSNLAKAFLDKHVTENK 178
             S++ EI    V+  + R++  +  N    NLA  FL +H T+ +
Sbjct:   128 SSRSEITDSAVLQCMLRFSHTQ--NPRLRNLACVFLQEHCTQKQ 169

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

FB|FBgn0038425 CG14881 [Drosophila melanogaster (taxid:7227)]

 Score = 185 (70.2 bits), Expect = 1.9e-14, P = 1.9e-14
 Identities = 42/156 (26%), Positives = 82/156 (52%)

Query:     1 MFTNNQRQEERTGRSGTPRLQYLQELVSQFQNSTDEERKEKIVANLANFAYDPYNYTFLR 60
             MF++++  + RT   G  R +Y+  LV ++  +T+ E ++++ ANLANFAYDP N++ L 
Sbjct:     1 MFSSHRTLKRRTPAQGIDRREYIGHLVDEYYTTTNIEAQQQVTANLANFAYDPINWSHLL 60

Query:    61 QLNVLELFLDCITEPNEKLVEFGVGGICNASVDPANAAIITKSGGIPLIIEC-LSSPVRN 119
             + + L++F+  +   ++ L   G+  +CN  +D   A  I +   + L+    + +    
Sbjct:    61 EADALDVFVASLETQDQLLKVHGIAALCNLCLDKTAAKFIREQ--LKLLTGLFVRTDHPE 118

Query:   120 TVNHALGALYYLCSMSTKEE---ILKPEVVDVIRRY 152
              V H+L   Y L     + E   +L P V+  ++ +
Sbjct:   119 IVLHSLALFYQLLEFGERTERDLLLSPAVLRTVQEW 154


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.317   0.133   0.374    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      178       178   0.00086  109 3  11 22  0.43    32
                                                     31  0.39    35


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  5
  No. of states in DFA:  569 (61 KB)
  Total size of DFA:  141 KB (2088 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  18.19u 0.13s 18.32t   Elapsed:  00:00:01
  Total cpu time:  18.19u 0.13s 18.32t   Elapsed:  00:00:01
  Start:  Fri May 10 22:17:26 2013   End:  Fri May 10 22:17:27 2013

GO:0008152 "metabolic process" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	178
cd00020	120	cd00020, ARM, Armadillo/beta-catenin-like repeats	1e-09
cd00020	120	cd00020, ARM, Armadillo/beta-catenin-like repeats	1e-07
pfam00514	41	pfam00514, Arm, Armadillo/beta-catenin-like repeat	3e-05
smart00185	41	smart00185, ARM, Armadillo/beta-catenin-like repea	4e-04

>gnl|CDD|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats

 Score = 53.5 bits (129), Expect = 1e-09
 Identities = 26/109 (23%), Positives = 52/109 (47%), Gaps = 5/109 (4%)

Query: 23  LQELVSQFQNSTDEERKE--KIVANLANFAYDPYNYTFLRQLNVLELFLDCITEPNEKLV 80
           L  LVS   +S +  ++E    ++NL+    D  N   + +   L   +  +   +E++V
Sbjct: 9   LPALVSLLSSSDENVQREAAWALSNLSAGNND--NIQAVVEAGGLPALVQLLKSEDEEVV 66

Query: 81  EFGVGGICN-ASVDPANAAIITKSGGIPLIIECLSSPVRNTVNHALGAL 128
           +  +  + N A+    N  I+ ++GG+P ++  L S   +   +A GAL
Sbjct: 67  KAALWALRNLAAGPEDNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGAL 115

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. Length = 120

>gnl|CDD|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats

 Score = 47.7 bits (114), Expect = 1e-07
 Identities = 19/91 (20%), Positives = 39/91 (42%), Gaps = 3/91 (3%)

Query: 59  LRQLNVLELFLDCITEPNEKLVEFGVGGICN-ASVDPANAAIITKSGGIPLIIECLSSPV 117
           + Q   L   +  ++  +E +       + N ++ +  N   + ++GG+P +++ L S  
Sbjct: 3   VIQAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSED 62

Query: 118 RNTVNHALGALYYLCSMST--KEEILKPEVV 146
              V  AL AL  L +     K  +L+   V
Sbjct: 63  EEVVKAALWALRNLAAGPEDNKLIVLEAGGV 93

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. Length = 120

>gnl|CDD|201276 pfam00514, Arm, Armadillo/beta-catenin-like repeat

 Score = 39.4 bits (93), Expect = 3e-05
 Identities = 12/41 (29%), Positives = 20/41 (48%)

Query: 93  DPANAAIITKSGGIPLIIECLSSPVRNTVNHALGALYYLCS 133
            P N   + ++G +P +++ LSSP       A  AL  L +
Sbjct: 1   SPENKQAVIEAGAVPPLVQLLSSPDEEVQEEAAWALSNLAA 41

Approx. 40 amino acid repeat. Tandem repeats form super-helix of helices that is proposed to mediate interaction of beta-catenin with its ligands. CAUTION: This family does not contain all known armadillo repeats. Length = 41

>gnl|CDD|214547 smart00185, ARM, Armadillo/beta-catenin-like repeats

 Score = 36.3 bits (85), Expect = 4e-04
 Identities = 14/41 (34%), Positives = 19/41 (46%)

Query: 93  DPANAAIITKSGGIPLIIECLSSPVRNTVNHALGALYYLCS 133
           D  N   +  +GG+P ++E L S     V  A  AL  L S
Sbjct: 1   DDENKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLSS 41

Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin. Length = 41

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	178
KOG4646	173	consensus Uncharacterized conserved protein, conta	100.0
cd00020	120	ARM Armadillo/beta-catenin-like repeats. An approx	99.44
PF04826	254	Arm_2: Armadillo-like; InterPro: IPR006911 This en	99.18
cd00020	120	ARM Armadillo/beta-catenin-like repeats. An approx	99.14
PLN03200	2102	cellulose synthase-interactive protein; Provisiona	98.98
PLN03200	2102	cellulose synthase-interactive protein; Provisiona	98.96
PF05804	708	KAP: Kinesin-associated protein (KAP)	98.93
PF05804	708	KAP: Kinesin-associated protein (KAP)	98.87
KOG4224	550	consensus Armadillo repeat protein VAC8 required f	98.85
KOG1206	272	consensus Peroxisomal multifunctional beta-oxidati	98.47
PF00514	41	Arm: Armadillo/beta-catenin-like repeat; InterPro:	98.37
KOG4224	550	consensus Armadillo repeat protein VAC8 required f	98.34
KOG0166	514	consensus Karyopherin (importin) alpha [Intracellu	98.28
PF04826	254	Arm_2: Armadillo-like; InterPro: IPR006911 This en	98.2
KOG1048	717	consensus Neural adherens junction protein Plakoph	98.12
smart00185	41	ARM Armadillo/beta-catenin-like repeats. Approx. 4	98.11
PF00514	41	Arm: Armadillo/beta-catenin-like repeat; InterPro:	98.1
PF09759	102	Atx10homo_assoc: Spinocerebellar ataxia type 10 pr	97.9
COG5064	526	SRP1 Karyopherin (importin) alpha [Intracellular t	97.75
KOG2160	342	consensus Armadillo/beta-catenin-like repeat-conta	97.71
KOG0166	514	consensus Karyopherin (importin) alpha [Intracellu	97.68
smart00185	41	ARM Armadillo/beta-catenin-like repeats. Approx. 4	97.68
KOG4500	604	consensus Rho/Rac GTPase guanine nucleotide exchan	97.34
PF03224	312	V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004	97.32
KOG1293	678	consensus Proteins containing armadillo/beta-caten	97.31
PF03224	312	V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004	97.25
COG5064	526	SRP1 Karyopherin (importin) alpha [Intracellular t	97.09
PF10508	503	Proteasom_PSMB: Proteasome non-ATPase 26S subunit;	97.08
PF10508	503	Proteasom_PSMB: Proteasome non-ATPase 26S subunit;	97.01
KOG4199	461	consensus Uncharacterized conserved protein [Funct	96.92
KOG1048	717	consensus Neural adherens junction protein Plakoph	96.86
PF13646	88	HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I	96.82
KOG4646	173	consensus Uncharacterized conserved protein, conta	96.75
PRK09687	280	putative lyase; Provisional	96.27
KOG4199	461	consensus Uncharacterized conserved protein [Funct	96.25
PF05536	543	Neurochondrin: Neurochondrin	96.21
PF13646	88	HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I	96.21
PF12717	178	Cnd1: non-SMC mitotic condensation complex subunit	96.17
PF08045	257	CDC14: Cell division control protein 14, SIN compo	96.06
KOG2122	2195	consensus Beta-catenin-binding protein APC, contai	95.87
PF01602	526	Adaptin_N: Adaptin N terminal region; InterPro: IP	95.69
PRK09687	280	putative lyase; Provisional	95.18
cd00256	429	VATPase_H VATPase_H, regulatory vacuolar ATP synth	94.87
PF01602	526	Adaptin_N: Adaptin N terminal region; InterPro: IP	94.67
KOG1222	791	consensus Kinesin associated protein KAP [Intracel	94.54
KOG2122	2195	consensus Beta-catenin-binding protein APC, contai	94.47
cd00256	429	VATPase_H VATPase_H, regulatory vacuolar ATP synth	94.38
PF13513	55	HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O	93.96
PF12348	228	CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi	93.79
PF11841	160	DUF3361: Domain of unknown function (DUF3361)	93.54
PF07814	361	WAPL: Wings apart-like protein regulation of heter	93.22
PF11698	119	V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011	92.74
PF12717	178	Cnd1: non-SMC mitotic condensation complex subunit	92.55
PF11701	157	UNC45-central: Myosin-binding striated muscle asse	92.3
PF12719	298	Cnd3: Nuclear condensing complex subunits, C-term	91.29
KOG2160	342	consensus Armadillo/beta-catenin-like repeat-conta	91.24
PF13513	55	HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O	91.05
PF09759	102	Atx10homo_assoc: Spinocerebellar ataxia type 10 pr	91.04
PF05918	556	API5: Apoptosis inhibitory protein 5 (API5); Inter	90.77
PF12755	97	Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region	90.41
PF12755	97	Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region	89.91
PF06371	187	Drf_GBD: Diaphanous GTPase-binding Domain; InterPr	89.82
KOG1222	791	consensus Kinesin associated protein KAP [Intracel	89.06
PF02985	31	HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re	88.53
COG5369	743	Uncharacterized conserved protein [Function unknow	88.32
PF12348	228	CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi	88.1
KOG4500	604	consensus Rho/Rac GTPase guanine nucleotide exchan	87.71
PF10274	183	ParcG: Parkin co-regulated protein; InterPro: IPR0	86.98
PF14663	115	RasGEF_N_2: Rapamycin-insensitive companion of mTO	86.15
PTZ00429	746	beta-adaptin; Provisional	86.0
PF06025	379	DUF913: Domain of Unknown Function (DUF913); Inter	85.93
KOG2023	885	consensus Nuclear transport receptor Karyopherin-b	84.37
PF14664	371	RICTOR_N: Rapamycin-insensitive companion of mTOR,	84.26
COG5096	757	Vesicle coat complex, various subunits [Intracellu	83.84
PF02985	31	HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re	83.39
PF12460	415	MMS19_C: RNAPII transcription regulator C-terminal	82.04
PF04063	192	DUF383: Domain of unknown function (DUF383); Inter	81.97
PF08045	257	CDC14: Cell division control protein 14, SIN compo	81.03
COG5096	757	Vesicle coat complex, various subunits [Intracellu	80.73

>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]

Probab=100.00  E-value=6.2e-70  Score=434.50  Aligned_cols=171  Identities=50%  Similarity=0.753  Sum_probs=164.7

Q ss_pred             HHHHHhhCCCCCChHHHHHHHHHHhhcCChHHHHHHHHHHhhhhccCcccHHHhhhccChHHHHhhhcCCcHHHHHHHHH
Q 030369            6 QRQEERTGRSGTPRLQYLQELVSQFQNSTDEERKEKIVANLANFAYDPYNYTFLRQLNVLELFLDCITEPNEKLVEFGVG   85 (178)
Q Consensus         6 ~~l~~rt~~~g~~R~~ylq~LV~efq~t~~~e~keqvlanLaNfAyDP~N~~~LrqL~vidlfld~L~~~n~~l~EfAig   85 (178)
                      +++++|||++|+||+||||+||+|||+|+++|+||||+||||||||||+||.||||++|+|+|+|+|+++|+.|+|||||
T Consensus         1 ~~qk~rt~~hgi~Rl~Ylq~LV~efq~tt~~eakeqv~ANLANFAYDP~Nys~Lrql~vLdlFvdsl~e~ne~LvefgIg   80 (173)
T KOG4646|consen    1 RTQKRRTPAHGIDRLEYLQHLVDEFQTTTNIEAKEQVTANLANFAYDPINYSHLRQLDVLDLFVDSLEEQNELLVEFGIG   80 (173)
T ss_pred             CCcccCCCCccCcHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccCcchHHHHHHhhHHHHHHHHhhcccHHHHHHhHH
Confidence            36899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhcCCchhhHHhhhcCChhHHHHhhcCCchhHHHHHHHHHHHhcCC--cccccccchHHHHHHHHhhhhcccchhHH
Q 030369           86 GICNASVDPANAAIITKSGGIPLIIECLSSPVRNTVNHALGALYYLCSM--STKEEILKPEVVDVIRRYAAAESVNVSFS  163 (178)
Q Consensus        86 gLcNL~~D~~nk~~I~~~gGi~~li~lLsS~~~evv~~AlttL~~L~~~--~sr~~I~~p~ll~ll~~~~~~~~~~~~~~  163 (178)
                      ||||+|+|++|+++|.+.+|||+||.|||||.+++|.+|++++|+|+.+  +.|.++++|+|+++|+||+.  +++.+++
T Consensus        81 glCNlC~d~~n~~~I~ea~g~plii~~lssp~e~tv~sa~~~l~~l~~~~Rt~r~ell~p~Vv~~v~r~~~--s~s~~~r  158 (173)
T KOG4646|consen   81 GLCNLCLDKTNAKFIREALGLPLIIFVLSSPPEITVHSAALFLQLLEFGERTERDELLSPAVVRTVQRWRE--SKSHDER  158 (173)
T ss_pred             HHHhhccChHHHHHHHHhcCCceEEeecCCChHHHHHHHHHHHHHhcCcccchhHHhccHHHHHHHHHHHH--HhhHHHH
Confidence            9999999999999999999999999999999999999999999999988  47999999999999999996  4467999


Q ss_pred             HhHHHHHHhhccCCC
Q 030369          164 NLAKAFLDKHVTENK  178 (178)
Q Consensus       164 nla~~fL~~~~~~~~  178 (178)
                      |||++||++||++|.
T Consensus       159 nLa~~fl~~~~~~~~  173 (173)
T KOG4646|consen  159 NLASAFLDKHVHANT  173 (173)
T ss_pred             HHHHHHHHhhcccCC
Confidence            999999999999874

>cd00020 ARM Armadillo/beta-catenin-like repeats

Probab=99.44  E-value=2.9e-12  Score=92.40  Aligned_cols=110  Identities=25%  Similarity=0.344  Sum_probs=98.5

Q ss_pred             HHHHHHHHhhcCChHHHHHHHHHHhhhhccC-cccHHHhhhccChHHHHhhhcCCcHHHHHHHHHHHHhhcCCc-hhhHH
Q 030369           22 YLQELVSQFQNSTDEERKEKIVANLANFAYD-PYNYTFLRQLNVLELFLDCITEPNEKLVEFGVGGICNASVDP-ANAAI   99 (178)
Q Consensus        22 ylq~LV~efq~t~~~e~keqvlanLaNfAyD-P~N~~~LrqL~vidlfld~L~~~n~~l~EfAiggLcNL~~D~-~nk~~   99 (178)
                      .++.|++-.+++ +.+.++.++..|+|++.+ |.++..+.+.++++.++++|..+++.+++.|.++|+|++.++ .....
T Consensus         8 ~i~~l~~~l~~~-~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~   86 (120)
T cd00020           8 GLPALVSLLSSS-DENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPEDNKLI   86 (120)
T ss_pred             ChHHHHHHHHcC-CHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcHHHHHH
Confidence            345566666655 488999999999999976 999999999999999999999999999999999999999886 56777


Q ss_pred             hhhcCChhHHHHhhcCCchhHHHHHHHHHHHhc
Q 030369          100 ITKSGGIPLIIECLSSPVRNTVNHALGALYYLC  132 (178)
Q Consensus       100 I~~~gGi~~li~lLsS~~~evv~~AlttL~~L~  132 (178)
                      +.+.|.++.++++|.+++.++...|+.+|.+|+
T Consensus        87 ~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~  119 (120)
T cd00020          87 VLEAGGVPKLVNLLDSSNEDIQKNATGALSNLA  119 (120)
T ss_pred             HHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhh
Confidence            788999999999999999999999999999886

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.

>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function

Probab=99.18  E-value=3e-10  Score=97.73  Aligned_cols=128  Identities=27%  Similarity=0.343  Sum_probs=109.8

Q ss_pred             HHHHHHHHHhhcCChHHHHHHHHHHhhhhccCcccHHHhhhccChHHHHhhhcCCcHHHHHHHHHHHHhhcCCchhhHHh
Q 030369           21 QYLQELVSQFQNSTDEERKEKIVANLANFAYDPYNYTFLRQLNVLELFLDCITEPNEKLVEFGVGGICNASVDPANAAII  100 (178)
Q Consensus        21 ~ylq~LV~efq~t~~~e~keqvlanLaNfAyDP~N~~~LrqL~vidlfld~L~~~n~~l~EfAiggLcNL~~D~~nk~~I  100 (178)
                      +-+|.|+.-.+.|++...+|+++..|.|.|+.|.|++.+|++|+++++...|..+++.+.+.|..+|.|++.+.+|+.+|
T Consensus        12 ~~l~~Ll~lL~~t~dp~i~e~al~al~n~aaf~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~en~~~I   91 (254)
T PF04826_consen   12 QELQKLLCLLESTEDPFIQEKALIALGNSAAFPFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVNDENQEQI   91 (254)
T ss_pred             HHHHHHHHHHhcCCChHHHHHHHHHHHhhccChhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCChhhHHHH
Confidence            45689999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhcCChhHHHHhh-cCC-chhHHHHHHHHHHHhcCCccccccc---chHHHHHHH
Q 030369          101 TKSGGIPLIIECL-SSP-VRNTVNHALGALYYLCSMSTKEEIL---KPEVVDVIR  150 (178)
Q Consensus       101 ~~~gGi~~li~lL-sS~-~~evv~~AlttL~~L~~~~sr~~I~---~p~ll~ll~  150 (178)
                      -..  |+.+.+.. ++| +.+++..++..|.+|........+.   .|.++.++.
T Consensus        92 k~~--i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~~~~~l~~~i~~ll~LL~  144 (254)
T PF04826_consen   92 KMY--IPQVCEETVSSPLNSEVQLAGLRLLTNLTVTNDYHHMLANYIPDLLSLLS  144 (254)
T ss_pred             HHH--HHHHHHHHhcCCCCCHHHHHHHHHHHccCCCcchhhhHHhhHHHHHHHHH
Confidence            764  88777765 444 6789999999999997553223333   366666654

>cd00020 ARM Armadillo/beta-catenin-like repeats

Probab=99.14  E-value=4.1e-10  Score=81.07  Aligned_cols=110  Identities=22%  Similarity=0.286  Sum_probs=91.1

Q ss_pred             hhhccChHHHHhhhcCCcHHHHHHHHHHHHhhcCC-chhhHHhhhcCChhHHHHhhcCCchhHHHHHHHHHHHhcCCc-c
Q 030369           59 LRQLNVLELFLDCITEPNEKLVEFGVGGICNASVD-PANAAIITKSGGIPLIIECLSSPVRNTVNHALGALYYLCSMS-T  136 (178)
Q Consensus        59 LrqL~vidlfld~L~~~n~~l~EfAiggLcNL~~D-~~nk~~I~~~gGi~~li~lLsS~~~evv~~AlttL~~L~~~~-s  136 (178)
                      +.+.|+++.+++.|..++..+++.|+.+|+|+|.+ |.....+.+.|++|.++++|+++++.++.+|+.+|++|+... .
T Consensus         3 ~~~~~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~~   82 (120)
T cd00020           3 VIQAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPED   82 (120)
T ss_pred             HHHcCChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcHH
Confidence            45789999999999999999999999999999988 999999999999999999999999999999999999999764 2


Q ss_pred             -ccccc----chHHHHHHHHhhhhcccchhHHHhHHHHHHhhc
Q 030369          137 -KEEIL----KPEVVDVIRRYAAAESVNVSFSNLAKAFLDKHV  174 (178)
Q Consensus       137 -r~~I~----~p~ll~ll~~~~~~~~~~~~~~nla~~fL~~~~  174 (178)
                       +..+.    .|.++++|...      +.+++..|..+|..-|
T Consensus        83 ~~~~~~~~g~l~~l~~~l~~~------~~~~~~~a~~~l~~l~  119 (120)
T cd00020          83 NKLIVLEAGGVPKLVNLLDSS------NEDIQKNATGALSNLA  119 (120)
T ss_pred             HHHHHHHCCChHHHHHHHhcC------CHHHHHHHHHHHHHhh
Confidence             23333    36666666443      3567777777776543

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.

>PLN03200 cellulose synthase-interactive protein; Provisional

Probab=98.98  E-value=6.1e-09  Score=109.45  Aligned_cols=130  Identities=15%  Similarity=0.149  Sum_probs=115.0

Q ss_pred             HHHHHHHhhcC-ChHHHHHHHHHHhhhhc-cCcccHHHhhh-ccChHHHHhhhcCCcHHHHHHHHHHHHhhcCCchhhHH
Q 030369           23 LQELVSQFQNS-TDEERKEKIVANLANFA-YDPYNYTFLRQ-LNVLELFLDCITEPNEKLVEFGVGGICNASVDPANAAI   99 (178)
Q Consensus        23 lq~LV~efq~t-~~~e~keqvlanLaNfA-yDP~N~~~Lrq-L~vidlfld~L~~~n~~l~EfAiggLcNL~~D~~nk~~   99 (178)
                      ...||.+.... ++.+.|+++++.|--|+ -++.|+..+.+ .|++|+++..|..++....+.|++.|.|+|.++.+|..
T Consensus        15 v~~Lve~L~s~~ss~~~~~~Al~~Lr~Lak~~~enR~~Ia~~aGaIP~LV~lL~sg~~~vk~nAaaaL~nLS~~e~nk~~   94 (2102)
T PLN03200         15 VAQCIEQLRAKSSSPQEKELTTARLLELAKTREEARKAIGSHSQAMPLLVSLLRSGTLGAKVNAAAVLGVLCKEEDLRVK   94 (2102)
T ss_pred             HHHHHHHHHcccCCHHHHHHHHHHHHHHHhcChHHHHHHHHccCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCHHHHHH
Confidence            44678888766 36788999999999999 77999999986 89999999999999999999999999999999999999


Q ss_pred             hhhcCChhHHHHhhcCCchhHHHHHHHHHHHhcCCc----cccccc-----chHHHHHHHHh
Q 030369          100 ITKSGGIPLIIECLSSPVRNTVNHALGALYYLCSMS----TKEEIL-----KPEVVDVIRRY  152 (178)
Q Consensus       100 I~~~gGi~~li~lLsS~~~evv~~AlttL~~L~~~~----sr~~I~-----~p~ll~ll~~~  152 (178)
                      |...|+||+|+.+|.+++++...+|..+|++|....    .+..|.     .|+|+++|+.-
T Consensus        95 Iv~~GaIppLV~LL~sGs~eaKe~AA~AL~sLS~~~~~D~~~~~I~v~~GaVp~Lv~lL~~g  156 (2102)
T PLN03200         95 VLLGGCIPPLLSLLKSGSAEAQKAAAEAIYAVSSGGLSDHVGSKIFSTEGVVPSLWDQLQPG  156 (2102)
T ss_pred             HHHcCChHHHHHHHHCCCHHHHHHHHHHHHHHHcCcchhhhhhhhhhhcCChHHHHHHHhCC
Confidence            999999999999999999999999999999998642    233333     59999999864

>PLN03200 cellulose synthase-interactive protein; Provisional

Probab=98.96  E-value=5e-09  Score=110.12  Aligned_cols=119  Identities=15%  Similarity=0.276  Sum_probs=106.6

Q ss_pred             CChHHHHHHHHHHhhhhc-cCcccHHHhhhccChHHHHhhhcCCcHHHHHHHHHHHHhhcCC-chhhHHhhhcCChhHHH
Q 030369           33 STDEERKEKIVANLANFA-YDPYNYTFLRQLNVLELFLDCITEPNEKLVEFGVGGICNASVD-PANAAIITKSGGIPLII  110 (178)
Q Consensus        33 t~~~e~keqvlanLaNfA-yDP~N~~~LrqL~vidlfld~L~~~n~~l~EfAiggLcNL~~D-~~nk~~I~~~gGi~~li  110 (178)
                      ..+.|.|++...+|++.+ .++.+|..+.+.+.++.+++.|..+++.+++.|...|.|++.. ..++..|.+.||||+++
T Consensus       415 ~~~~evQ~~Av~aL~~L~~~~~e~~~aIi~~ggIp~LV~LL~s~s~~iQ~~A~~~L~nLa~~ndenr~aIieaGaIP~LV  494 (2102)
T PLN03200        415 MATADVQEELIRALSSLCCGKGGLWEALGGREGVQLLISLLGLSSEQQQEYAVALLAILTDEVDESKWAITAAGGIPPLV  494 (2102)
T ss_pred             cCCHHHHHHHHHHHHHHhCCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHH
Confidence            346799999999999999 6699999999999999999999999999999999999999974 67899999999999999


Q ss_pred             HhhcCCchhHHHHHHHHHHHhcCC--ccccccc----chHHHHHHHH
Q 030369          111 ECLSSPVRNTVNHALGALYYLCSM--STKEEIL----KPEVVDVIRR  151 (178)
Q Consensus       111 ~lLsS~~~evv~~AlttL~~L~~~--~sr~~I~----~p~ll~ll~~  151 (178)
                      ++|++++.+++.+|+++|.+|+..  +.+..|.    .||++++|+.
T Consensus       495 ~LL~s~~~~iqeeAawAL~NLa~~~~qir~iV~~aGAIppLV~LL~s  541 (2102)
T PLN03200        495 QLLETGSQKAKEDSATVLWNLCCHSEDIRACVESAGAVPALLWLLKN  541 (2102)
T ss_pred             HHHcCCCHHHHHHHHHHHHHHhCCcHHHHHHHHHCCCHHHHHHHHhC
Confidence            999999999999999999999964  2345453    4999999964

>PF05804 KAP: Kinesin-associated protein (KAP)

Probab=98.93  E-value=3.9e-09  Score=102.13  Aligned_cols=105  Identities=24%  Similarity=0.360  Sum_probs=100.3

Q ss_pred             hhhhccCcccHHHhhhccChHHHHhhhcCCcHHHHHHHHHHHHhhcCCchhhHHhhhcCChhHHHHhhcCCchhHHHHHH
Q 030369           46 LANFAYDPYNYTFLRQLNVLELFLDCITEPNEKLVEFGVGGICNASVDPANAAIITKSGGIPLIIECLSSPVRNTVNHAL  125 (178)
Q Consensus        46 LaNfAyDP~N~~~LrqL~vidlfld~L~~~n~~l~EfAiggLcNL~~D~~nk~~I~~~gGi~~li~lLsS~~~evv~~Al  125 (178)
                      |.|+|-||.+...+++-+++.+++.+|+.+|..++-.+++.|.+||..+.||..|.+.|.|+.|++++.|++++++..++
T Consensus       273 LlNLAed~~ve~kM~~~~iV~~Lv~~Ldr~n~ellil~v~fLkkLSi~~ENK~~m~~~giV~kL~kLl~s~~~~l~~~aL  352 (708)
T PF05804_consen  273 LLNLAEDPRVELKMVNKGIVSLLVKCLDRENEELLILAVTFLKKLSIFKENKDEMAESGIVEKLLKLLPSENEDLVNVAL  352 (708)
T ss_pred             HHHHhcChHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHhcCCCHHHHHHHH
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhcCC-ccccccc----chHHHHHHH
Q 030369          126 GALYYLCSM-STKEEIL----KPEVVDVIR  150 (178)
Q Consensus       126 ttL~~L~~~-~sr~~I~----~p~ll~ll~  150 (178)
                      ..|++|+.+ ..|..+.    .|.++.+|.
T Consensus       353 rlL~NLSfd~~~R~~mV~~GlIPkLv~LL~  382 (708)
T PF05804_consen  353 RLLFNLSFDPELRSQMVSLGLIPKLVELLK  382 (708)
T ss_pred             HHHHHhCcCHHHHHHHHHCCCcHHHHHHhC
Confidence            999999987 5788888    499999984

>PF05804 KAP: Kinesin-associated protein (KAP)

Probab=98.87  E-value=2.1e-08  Score=97.19  Aligned_cols=131  Identities=22%  Similarity=0.262  Sum_probs=114.7

Q ss_pred             HHHHHHHHHhhcCChHHHHHHHHHHhhhhccCcccHHHhhhccChHHHHhhhcCCcHHHHHHHHHHHHhhcCCchhhHHh
Q 030369           21 QYLQELVSQFQNSTDEERKEKIVANLANFAYDPYNYTFLRQLNVLELFLDCITEPNEKLVEFGVGGICNASVDPANAAII  100 (178)
Q Consensus        21 ~ylq~LV~efq~t~~~e~keqvlanLaNfAyDP~N~~~LrqL~vidlfld~L~~~n~~l~EfAiggLcNL~~D~~nk~~I  100 (178)
                      ..+.-||.-.+.. +.|..--++.-|.+.+..+.|+..+.+.|+++.++..|..+++.+++-|+..|+|||-|+..+.++
T Consensus       290 ~iV~~Lv~~Ldr~-n~ellil~v~fLkkLSi~~ENK~~m~~~giV~kL~kLl~s~~~~l~~~aLrlL~NLSfd~~~R~~m  368 (708)
T PF05804_consen  290 GIVSLLVKCLDRE-NEELLILAVTFLKKLSIFKENKDEMAESGIVEKLLKLLPSENEDLVNVALRLLFNLSFDPELRSQM  368 (708)
T ss_pred             CCHHHHHHHHcCC-CHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHhcCCCHHHHHHHHHHHHHhCcCHHHHHHH
Confidence            4456777766554 788999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhcCChhHHHHhhcCCchhHHHHHHHHHHHhcCC-ccccccc----chHHHHHHHHhhh
Q 030369          101 TKSGGIPLIIECLSSPVRNTVNHALGALYYLCSM-STKEEIL----KPEVVDVIRRYAA  154 (178)
Q Consensus       101 ~~~gGi~~li~lLsS~~~evv~~AlttL~~L~~~-~sr~~I~----~p~ll~ll~~~~~  154 (178)
                      .+.|.||.++.+|++++  ....++.+||+|+.+ .+|..+.    .|.++++|.....
T Consensus       369 V~~GlIPkLv~LL~d~~--~~~val~iLy~LS~dd~~r~~f~~TdcIp~L~~~Ll~~~~  425 (708)
T PF05804_consen  369 VSLGLIPKLVELLKDPN--FREVALKILYNLSMDDEARSMFAYTDCIPQLMQMLLENSE  425 (708)
T ss_pred             HHCCCcHHHHHHhCCCc--hHHHHHHHHHHhccCHhhHHHHhhcchHHHHHHHHHhCCC
Confidence            99999999999998753  445699999999977 5777776    4888898877644

>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.85  E-value=1.3e-08  Score=92.97  Aligned_cols=131  Identities=20%  Similarity=0.256  Sum_probs=115.9

Q ss_pred             HHHHHHHhhcCChHHHHHHHHHHhhhhccCcccHHHhhhccChHHHHhhhcCCcHHHHHHHHHHHHhhcCCchhhHHhhh
Q 030369           23 LQELVSQFQNSTDEERKEKIVANLANFAYDPYNYTFLRQLNVLELFLDCITEPNEKLVEFGVGGICNASVDPANAAIITK  102 (178)
Q Consensus        23 lq~LV~efq~t~~~e~keqvlanLaNfAyDP~N~~~LrqL~vidlfld~L~~~n~~l~EfAiggLcNL~~D~~nk~~I~~  102 (178)
                      ...||+=| ++++..+|-|+..+|-|.|.|..=..-+.+.|.+|+++..|+++...++--..+||-|+++-|.|..-|.+
T Consensus       253 v~~Lv~Lm-d~~s~kvkcqA~lALrnlasdt~Yq~eiv~ag~lP~lv~Llqs~~~plilasVaCIrnisihplNe~lI~d  331 (550)
T KOG4224|consen  253 VPALVDLM-DDGSDKVKCQAGLALRNLASDTEYQREIVEAGSLPLLVELLQSPMGPLILASVACIRNISIHPLNEVLIAD  331 (550)
T ss_pred             HHHHHHHH-hCCChHHHHHHHHHHhhhcccchhhhHHHhcCCchHHHHHHhCcchhHHHHHHHHHhhcccccCcccceec
Confidence            45788855 55588899999999999999998888899999999999999999989999999999999999999999999


Q ss_pred             cCChhHHHHhhcCCc-hhHHHHHHHHHHHhcCC--ccccccc----chHHHHHHHHhhh
Q 030369          103 SGGIPLIIECLSSPV-RNTVNHALGALYYLCSM--STKEEIL----KPEVVDVIRRYAA  154 (178)
Q Consensus       103 ~gGi~~li~lLsS~~-~evv~~AlttL~~L~~~--~sr~~I~----~p~ll~ll~~~~~  154 (178)
                      .|=+.|++++|+-.+ ++++.||+.+|++|..+  .++..|.    +|-+.++++.-..
T Consensus       332 agfl~pLVrlL~~~dnEeiqchAvstLrnLAasse~n~~~i~esgAi~kl~eL~lD~pv  390 (550)
T KOG4224|consen  332 AGFLRPLVRLLRAGDNEEIQCHAVSTLRNLAASSEHNVSVIRESGAIPKLIELLLDGPV  390 (550)
T ss_pred             ccchhHHHHHHhcCCchhhhhhHHHHHHHHhhhhhhhhHHHhhcCchHHHHHHHhcCCh
Confidence            999999999996665 67999999999999975  4788888    5888888776655

>KOG1206 consensus Peroxisomal multifunctional beta-oxidation protein and related enzymes [Lipid transport and metabolism]

Probab=98.47  E-value=6.6e-08  Score=83.37  Aligned_cols=76  Identities=7%  Similarity=-0.107  Sum_probs=67.1

Q ss_pred             CCCChHHHHHHHHHHhhcCChHHHHHHHHHHhhhhccCcccHHHhhhccChHHHHhhhcCCcHHHHHHHHHHHHhhcCCc
Q 030369           15 SGTPRLQYLQELVSQFQNSTDEERKEKIVANLANFAYDPYNYTFLRQLNVLELFLDCITEPNEKLVEFGVGGICNASVDP   94 (178)
Q Consensus        15 ~g~~R~~ylq~LV~efq~t~~~e~keqvlanLaNfAyDP~N~~~LrqL~vidlfld~L~~~n~~l~EfAiggLcNL~~D~   94 (178)
                      .|.+|+||+-.+++++.+|+   ...++.+|++||||||.||.+.     ++.|+.++...+.  ..|++...||.|.|.
T Consensus         6 f~~~tkd~I~y~lg~g~t~k---d~~~~yeN~~dF~~lPt~~v~p-----~~~~~~~~~~~d~--~~~~~~lhgeqy~e~   75 (272)
T KOG1206|consen    6 FKYTTKDCILYALGLGATSK---DLKYTYENDPDFQVLPTFAVIP-----ATATLLMDNLVDN--FDYAMLLHGEQYFEL   75 (272)
T ss_pred             ccccHHHHHHHHhccccchh---HHHHHhccCccceeccceeeeh-----hHHHHHhhccchh--HHHHHHHHHHHHHHH
Confidence            78999999999999999998   7889999999999999999999     7788887776655  889999999999987


Q ss_pred             hhhHHhh
Q 030369           95 ANAAIIT  101 (178)
Q Consensus        95 ~nk~~I~  101 (178)
                      .. ..+.
T Consensus        76 ~~-~l~~   81 (272)
T KOG1206|consen   76 CT-TLPS   81 (272)
T ss_pred             Hc-cccc
Confidence            66 4444

>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless

Probab=98.37  E-value=4.6e-07  Score=56.71  Aligned_cols=40  Identities=35%  Similarity=0.492  Sum_probs=38.1

Q ss_pred             CchhhHHhhhcCChhHHHHhhcCCchhHHHHHHHHHHHhc
Q 030369           93 DPANAAIITKSGGIPLIIECLSSPVRNTVNHALGALYYLC  132 (178)
Q Consensus        93 D~~nk~~I~~~gGi~~li~lLsS~~~evv~~AlttL~~L~  132 (178)
                      +|.+++.|.+.||||+|++||++++++++.+|+.+|.+|+
T Consensus         1 ~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~   40 (41)
T PF00514_consen    1 SPENKQAIVEAGGIPPLVQLLKSPDPEVQEEAAWALGNLA   40 (41)
T ss_dssp             SHHHHHHHHHTTHHHHHHHHTTSSSHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHcccHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence            5789999999999999999999999999999999999986

Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....

>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.34  E-value=5.8e-06  Score=76.02  Aligned_cols=124  Identities=20%  Similarity=0.263  Sum_probs=106.7

Q ss_pred             HHHHhhcCChHHHHHHHHHHhhhhccCcccHHHhhhcc--ChHHHHhhhcCCcHHHHHHHHHHHHhhcCCchhhHHhhhc
Q 030369           26 LVSQFQNSTDEERKEKIVANLANFAYDPYNYTFLRQLN--VLELFLDCITEPNEKLVEFGVGGICNASVDPANAAIITKS  103 (178)
Q Consensus        26 LV~efq~t~~~e~keqvlanLaNfAyDP~N~~~LrqL~--vidlfld~L~~~n~~l~EfAiggLcNL~~D~~nk~~I~~~  103 (178)
                      ||. .-.+++.+.|+-.+-.+.|-|-|..+++.|.|.+  +++.++|....++++..--|..+|-|++.|..-+..|.+.
T Consensus       213 LVs-ll~s~d~dvqyycttaisnIaVd~~~Rk~Laqaep~lv~~Lv~Lmd~~s~kvkcqA~lALrnlasdt~Yq~eiv~a  291 (550)
T KOG4224|consen  213 LVS-LLKSGDLDVQYYCTTAISNIAVDRRARKILAQAEPKLVPALVDLMDDGSDKVKCQAGLALRNLASDTEYQREIVEA  291 (550)
T ss_pred             hhh-hhccCChhHHHHHHHHhhhhhhhHHHHHHHHhcccchHHHHHHHHhCCChHHHHHHHHHHhhhcccchhhhHHHhc
Confidence            443 3356699999999999999999999999999998  9999999999999999999999999999999999999999


Q ss_pred             CChhHHHHhhcCCchhHHHHHHHHHHHhc-CCccccccc----chHHHHHHH
Q 030369          104 GGIPLIIECLSSPVRNTVNHALGALYYLC-SMSTKEEIL----KPEVVDVIR  150 (178)
Q Consensus       104 gGi~~li~lLsS~~~evv~~AlttL~~L~-~~~sr~~I~----~p~ll~ll~  150 (178)
                      ||||.++++|.||.--.++-++.|+-++. .|-+..-|.    ..|++++|+
T Consensus       292 g~lP~lv~Llqs~~~plilasVaCIrnisihplNe~lI~dagfl~pLVrlL~  343 (550)
T KOG4224|consen  292 GSLPLLVELLQSPMGPLILASVACIRNISIHPLNEVLIADAGFLRPLVRLLR  343 (550)
T ss_pred             CCchHHHHHHhCcchhHHHHHHHHHhhcccccCcccceecccchhHHHHHHh
Confidence            99999999999888777788899998876 333333333    267888775

>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.28  E-value=1.3e-05  Score=75.60  Aligned_cols=112  Identities=16%  Similarity=0.236  Sum_probs=102.9

Q ss_pred             HHHHHHHhhcCChHHHHHHHHHHhhhhc-cCcccHHHhhhccChHHHHhhhcCCcHHHHHHHHHHHHhhcCC-chhhHHh
Q 030369           23 LQELVSQFQNSTDEERKEKIVANLANFA-YDPYNYTFLRQLNVLELFLDCITEPNEKLVEFGVGGICNASVD-PANAAII  100 (178)
Q Consensus        23 lq~LV~efq~t~~~e~keqvlanLaNfA-yDP~N~~~LrqL~vidlfld~L~~~n~~l~EfAiggLcNL~~D-~~nk~~I  100 (178)
                      ++.||..+....+...|..+.=.|.|-| -.+.+....-+.|++++|+.+|.++++.+.|=|+-+|.|.+-| |..+.++
T Consensus       111 v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T~~vv~agavp~fi~Ll~s~~~~v~eQavWALgNIagds~~~Rd~v  190 (514)
T KOG0166|consen  111 VPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQTKVVVDAGAVPIFIQLLSSPSADVREQAVWALGNIAGDSPDCRDYV  190 (514)
T ss_pred             HHHHHHHHccCCChhHHHHHHHHHHHHhcCchhhccccccCCchHHHHHHhcCCcHHHHHHHHHHHhccccCChHHHHHH
Confidence            5678998888888999999999999999 6799999999999999999999999999999999999999999 9999999


Q ss_pred             hhcCChhHHHHhhcCCch-hHHHHHHHHHHHhcCC
Q 030369          101 TKSGGIPLIIECLSSPVR-NTVNHALGALYYLCSM  134 (178)
Q Consensus       101 ~~~gGi~~li~lLsS~~~-evv~~AlttL~~L~~~  134 (178)
                      +.+|.++++..++..+++ -.+.++.=+|.+||.-
T Consensus       191 l~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrg  225 (514)
T KOG0166|consen  191 LSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRG  225 (514)
T ss_pred             HhhcchHHHHHHhccccchHHHHHHHHHHHHHHcC
Confidence            999999999999977766 5778888999999944

>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function

Probab=98.20  E-value=1.5e-05  Score=68.70  Aligned_cols=111  Identities=20%  Similarity=0.267  Sum_probs=89.7

Q ss_pred             HHHhhcCChHHHHHHHHHHhhhhccCcccHHHhhhccChHHHHhh-hcCC-cHHHHHHHHHHHHhhcCCchhhHHhhhcC
Q 030369           27 VSQFQNSTDEERKEKIVANLANFAYDPYNYTFLRQLNVLELFLDC-ITEP-NEKLVEFGVGGICNASVDPANAAIITKSG  104 (178)
Q Consensus        27 V~efq~t~~~e~keqvlanLaNfAyDP~N~~~LrqL~vidlfld~-L~~~-n~~l~EfAiggLcNL~~D~~nk~~I~~~g  104 (178)
                      |...=.+++...|++.+-+|+|+|.+..|...++.  .++-.+.. ++.+ |..++.-|...|.||+++......+.  +
T Consensus        59 I~~lL~~p~~~vr~~AL~aL~Nls~~~en~~~Ik~--~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~~~~~l~--~  134 (254)
T PF04826_consen   59 IGSLLNDPNPSVREKALNALNNLSVNDENQEQIKM--YIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTNDYHHMLA--N  134 (254)
T ss_pred             HHHHcCCCChHHHHHHHHHHHhcCCChhhHHHHHH--HHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCcchhhhHH--h
Confidence            44445668999999999999999999999998875  34444443 3332 77888999999999999998887776  4


Q ss_pred             ChhHHHHhhcCCchhHHHHHHHHHHHhcCC-ccccccc
Q 030369          105 GIPLIIECLSSPVRNTVNHALGALYYLCSM-STKEEIL  141 (178)
Q Consensus       105 Gi~~li~lLsS~~~evv~~AlttL~~L~~~-~sr~~I~  141 (178)
                      +++.+++||++++..++.+++.+|++|... ....++.
T Consensus       135 ~i~~ll~LL~~G~~~~k~~vLk~L~nLS~np~~~~~Ll  172 (254)
T PF04826_consen  135 YIPDLLSLLSSGSEKTKVQVLKVLVNLSENPDMTRELL  172 (254)
T ss_pred             hHHHHHHHHHcCChHHHHHHHHHHHHhccCHHHHHHHH
Confidence            799999999999999999999999999966 4344444

>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]

Probab=98.12  E-value=1.5e-05  Score=77.40  Aligned_cols=145  Identities=19%  Similarity=0.216  Sum_probs=114.5

Q ss_pred             hHHHHHHHHHHhhcCChHHHHHHHHHHhhhhc-cCcccHHHh-----hhccChHHHHhhhcCCcHHHHHHHHHHHHhhcC
Q 030369           19 RLQYLQELVSQFQNSTDEERKEKIVANLANFA-YDPYNYTFL-----RQLNVLELFLDCITEPNEKLVEFGVGGICNASV   92 (178)
Q Consensus        19 R~~ylq~LV~efq~t~~~e~keqvlanLaNfA-yDP~N~~~L-----rqL~vidlfld~L~~~n~~l~EfAiggLcNL~~   92 (178)
                      +.-||-.|-    .+++....|.....|-|.+ .++-=-.++     ++=++++.+++.|..+++.+++-|+|.|-||+.
T Consensus       520 Vr~Yl~Ll~----~s~n~~TlEasaGaLQNltA~~~~~~~~~~~~v~~kekgl~~l~~ll~~~~~~vv~s~a~~LrNls~  595 (717)
T KOG1048|consen  520 VRPYLLLLA----LSKNDNTLEASAGALQNLTAGLWTWSEYMRGAVFRKEKGLPPLVELLRNDDSDVVRSAAGALRNLSR  595 (717)
T ss_pred             HHHHHHHHH----HhcchHHHHHhhhhHhhhhccCCcchhHHHhhhhhhccCccHHHHHHhcCCchHHHHHHHHHhhhcc
Confidence            455665543    5778888888888888887 554433444     555799999999999999999999999999999


Q ss_pred             CchhhHHhhhcCChhHHHHhhcC------CchhHHHHHHHHHHHhcCC--ccccccc----chHHHHHHHHhhhhcccch
Q 030369           93 DPANAAIITKSGGIPLIIECLSS------PVRNTVNHALGALYYLCSM--STKEEIL----KPEVVDVIRRYAAAESVNV  160 (178)
Q Consensus        93 D~~nk~~I~~~gGi~~li~lLsS------~~~evv~~AlttL~~L~~~--~sr~~I~----~p~ll~ll~~~~~~~~~~~  160 (178)
                      |+.||+.|- +++++.+++||..      .++|++.++.-||.+++..  +..++..    +|-++-+.++  .+   ++
T Consensus       596 d~rnk~lig-k~a~~~lv~~Lp~~~~~~~~sedtv~~vc~tl~niv~~~~~nAkdl~~~~g~~kL~~I~~s--~~---S~  669 (717)
T KOG1048|consen  596 DIRNKELIG-KYAIPDLVRCLPGSGPSTSLSEDTVRAVCHTLNNIVRKNVLNAKDLLEIKGIPKLRLISKS--QH---SP  669 (717)
T ss_pred             Cchhhhhhh-cchHHHHHHhCcCCCCCcCchHHHHHHHHHhHHHHHHHhHHHHHHHHhccChHHHHHHhcc--cC---CH
Confidence            999999998 7899999999922      2479999999999999954  4444444    5777777666  22   36


Q ss_pred             hHHHhHHHHHHhh
Q 030369          161 SFSNLAKAFLDKH  173 (178)
Q Consensus       161 ~~~nla~~fL~~~  173 (178)
                      +..+.|..||.+-
T Consensus       670 k~~kaAs~vL~~l  682 (717)
T KOG1048|consen  670 KEFKAASSVLDVL  682 (717)
T ss_pred             HHHHHHHHHHHHH
Confidence            9999999999763

>smart00185 ARM Armadillo/beta-catenin-like repeats

Probab=98.11  E-value=6.2e-06  Score=50.08  Aligned_cols=40  Identities=30%  Similarity=0.431  Sum_probs=37.0

Q ss_pred             CchhhHHhhhcCChhHHHHhhcCCchhHHHHHHHHHHHhc
Q 030369           93 DPANAAIITKSGGIPLIIECLSSPVRNTVNHALGALYYLC  132 (178)
Q Consensus        93 D~~nk~~I~~~gGi~~li~lLsS~~~evv~~AlttL~~L~  132 (178)
                      ++.++..|.+.|||++|+++|++++++++.+++.+|.+|+
T Consensus         1 ~~~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~aL~nl~   40 (41)
T smart00185        1 DDEQKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLS   40 (41)
T ss_pred             CcHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHc
Confidence            3558999999999999999999999999999999999986

Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.

>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless

Probab=98.10  E-value=3.8e-06  Score=52.51  Aligned_cols=41  Identities=12%  Similarity=0.178  Sum_probs=39.2

Q ss_pred             CcccHHHhhhccChHHHHhhhcCCcHHHHHHHHHHHHhhcC
Q 030369           52 DPYNYTFLRQLNVLELFLDCITEPNEKLVEFGVGGICNASV   92 (178)
Q Consensus        52 DP~N~~~LrqL~vidlfld~L~~~n~~l~EfAiggLcNL~~   92 (178)
                      ||.|...+.+.|+++.++++|..+++.+++.|.++|+|||.
T Consensus         1 ~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~~   41 (41)
T PF00514_consen    1 SPENKQAIVEAGGIPPLVQLLKSPDPEVQEEAAWALGNLAA   41 (41)
T ss_dssp             SHHHHHHHHHTTHHHHHHHHTTSSSHHHHHHHHHHHHHHHT
T ss_pred             CHHHHHHHHHcccHHHHHHHHcCCCHHHHHHHHHHHHHHhC
Confidence            68999999999999999999999999999999999999973

Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....

>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10

Probab=97.90  E-value=3.2e-05  Score=58.80  Aligned_cols=64  Identities=27%  Similarity=0.432  Sum_probs=56.4

Q ss_pred             HHHHHHHhhhhccC-cccHHHhhhccChHHHHhhhc--CCcHHHHHHHHHHHHhhcCC-chhhHHhhh
Q 030369           39 KEKIVANLANFAYD-PYNYTFLRQLNVLELFLDCIT--EPNEKLVEFGVGGICNASVD-PANAAIITK  102 (178)
Q Consensus        39 keqvlanLaNfAyD-P~N~~~LrqL~vidlfld~L~--~~n~~l~EfAiggLcNL~~D-~~nk~~I~~  102 (178)
                      |.-++.=+||.+|+ |.|...+|+++-|+++|++=.  +.||.+.|.|+.||=|||.+ ++|+++|.+
T Consensus         3 K~~lvrlianl~~~~~~~Qd~vr~~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~n~eNQ~~I~~   70 (102)
T PF09759_consen    3 KRDLVRLIANLCYKNKEVQDLVRELGGIPLILSCCNIDDHNPFIREWAIFAIRNLCEGNPENQEFIAQ   70 (102)
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHhcCCCcccHHHHHHHHHHHHHHHhCCHHHHHHHHh
Confidence            55677888999987 999999999999999999854  55999999999999999977 889988854

Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].

>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]

Probab=97.75  E-value=0.00023  Score=65.30  Aligned_cols=122  Identities=20%  Similarity=0.286  Sum_probs=98.9

Q ss_pred             HHHHHHHHhhcCChHHHHHHHHHHhhhhccC-cccHHHhhhccChHHHHhhhcCCc--HHHHHHHHHHHHhhcCC---ch
Q 030369           22 YLQELVSQFQNSTDEERKEKIVANLANFAYD-PYNYTFLRQLNVLELFLDCITEPN--EKLVEFGVGGICNASVD---PA   95 (178)
Q Consensus        22 ylq~LV~efq~t~~~e~keqvlanLaNfAyD-P~N~~~LrqL~vidlfld~L~~~n--~~l~EfAiggLcNL~~D---~~   95 (178)
                      |+|.|     .+++.+.+||++=+|.|-|-| |.=++|.-+-|+++.+|..|.++-  ..++..|+=-|.|||--   |.
T Consensus       162 fiqlL-----~s~~~~V~eQavWALGNiAGDS~~~RD~vL~~galeplL~ll~ss~~~ismlRn~TWtLSNlcRGknP~P  236 (526)
T COG5064         162 FIQLL-----SSTEDDVREQAVWALGNIAGDSEGCRDYVLQCGALEPLLGLLLSSAIHISMLRNATWTLSNLCRGKNPPP  236 (526)
T ss_pred             HHHHH-----cCchHHHHHHHHHHhccccCCchhHHHHHHhcCchHHHHHHHHhccchHHHHHHhHHHHHHhhCCCCCCC
Confidence            45555     357899999999999999988 778899999999999999999874  49999999999999943   44


Q ss_pred             hhHHhhhcCChhHHHHhhcCCchhHHHHHHHHHHHhcCCc--cccccc----chHHHHHHH
Q 030369           96 NAAIITKSGGIPLIIECLSSPVRNTVNHALGALYYLCSMS--TKEEIL----KPEVVDVIR  150 (178)
Q Consensus        96 nk~~I~~~gGi~~li~lLsS~~~evv~~AlttL~~L~~~~--sr~~I~----~p~ll~ll~  150 (178)
                      +-.-|..  .+|.+.+|+-|.|+||+..|.=++.||++-.  .-.+|.    -++|+++|-
T Consensus       237 ~w~~isq--alpiL~KLiys~D~evlvDA~WAiSYlsDg~~E~i~avld~g~~~RLvElLs  295 (526)
T COG5064         237 DWSNISQ--ALPILAKLIYSRDPEVLVDACWAISYLSDGPNEKIQAVLDVGIPGRLVELLS  295 (526)
T ss_pred             chHHHHH--HHHHHHHHHhhcCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHhc
Confidence            4445543  4999999999999999999999999999653  222232    277888773

>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=97.71  E-value=0.00042  Score=62.60  Aligned_cols=139  Identities=25%  Similarity=0.244  Sum_probs=109.0

Q ss_pred             CChHHHHHHHHHHhhhhccCcccHHHhhhccChHHHHhhhcCCcHHHHHHHHHHHHhhc-CCchhhHHhhhcCChhHHHH
Q 030369           33 STDEERKEKIVANLANFAYDPYNYTFLRQLNVLELFLDCITEPNEKLVEFGVGGICNAS-VDPANAAIITKSGGIPLIIE  111 (178)
Q Consensus        33 t~~~e~keqvlanLaNfAyDP~N~~~LrqL~vidlfld~L~~~n~~l~EfAiggLcNL~-~D~~nk~~I~~~gGi~~li~  111 (178)
                      +.+.+.||-.+.||.=+.=|=.|-.-|..+|-+.+.+..|..++..+.+.|+-=|..++ ..|..++++++.||++.|+.
T Consensus        94 s~~le~ke~ald~Le~lve~iDnAndl~~~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll~  173 (342)
T KOG2160|consen   94 SVDLEDKEDALDNLEELVEDIDNANDLISLGGLVPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLLK  173 (342)
T ss_pred             cCCHHHHHHHHHHHHHHHHhhhhHHhHhhccCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHHH
Confidence            35778899999999999988899999999999999999999999999999999888886 56999999999999999999


Q ss_pred             hhcCCchhHH-HHHHHHHHHhcCC---cccccccc---hHHHHHHHHhhhhcccchhHHHhHHHHHHhhcc
Q 030369          112 CLSSPVRNTV-NHALGALYYLCSM---STKEEILK---PEVVDVIRRYAAAESVNVSFSNLAKAFLDKHVT  175 (178)
Q Consensus       112 lLsS~~~evv-~~AlttL~~L~~~---~sr~~I~~---p~ll~ll~~~~~~~~~~~~~~nla~~fL~~~~~  175 (178)
                      .|++.+++++ ..|+-+++.|+.-   ....-..+   ..|.++|++    .+..+|+.-+|..++.+...
T Consensus       174 ~ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~----~~~~~~lkrK~~~Ll~~Ll~  240 (342)
T KOG2160|consen  174 ILSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQS----NNTSVKLKRKALFLLSLLLQ  240 (342)
T ss_pred             HHccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHc----CCcchHHHHHHHHHHHHHHH
Confidence            9988777777 6667777777622   22222223   444444433    23457888888877776654

>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.68  E-value=0.00045  Score=65.29  Aligned_cols=152  Identities=16%  Similarity=0.193  Sum_probs=121.7

Q ss_pred             HHHHHHHhhcCChHHHHHHHHHHhhhhc-cCcccHHHhhhccChHHHHhhhcCCcHHHHHHHHHHHHhhcCC--chhhHH
Q 030369           23 LQELVSQFQNSTDEERKEKIVANLANFA-YDPYNYTFLRQLNVLELFLDCITEPNEKLVEFGVGGICNASVD--PANAAI   99 (178)
Q Consensus        23 lq~LV~efq~t~~~e~keqvlanLaNfA-yDP~N~~~LrqL~vidlfld~L~~~n~~l~EfAiggLcNL~~D--~~nk~~   99 (178)
                      |..|-..+..++.+--|+++.=.+.|-+ -.+.--.+.-..|++|.++.+|+..+-.+..-|.-+|+|++..  +.--.+
T Consensus       323 L~~l~~ll~~s~~~~ikkEAcW~iSNItAG~~~qiqaVida~l~p~Li~~l~~~ef~~rKEAawaIsN~ts~g~~~qi~y  402 (514)
T KOG0166|consen  323 LPVLSNLLSSSPKESIKKEACWTISNITAGNQEQIQAVIDANLIPVLINLLQTAEFDIRKEAAWAISNLTSSGTPEQIKY  402 (514)
T ss_pred             HHHHHHHhccCcchhHHHHHHHHHHHhhcCCHHHHHHHHHcccHHHHHHHHhccchHHHHHHHHHHHhhcccCCHHHHHH
Confidence            3344444446766667888888999976 5566667777789999999999999999999999999999866  555566


Q ss_pred             hhhcCChhHHHHhhcCCchhHHHHHHHHHHHhcCC-ccccc----c-----cchHHHHHHHHhhhhcccchhHHHhHHHH
Q 030369          100 ITKSGGIPLIIECLSSPVRNTVNHALGALYYLCSM-STKEE----I-----LKPEVVDVIRRYAAAESVNVSFSNLAKAF  169 (178)
Q Consensus       100 I~~~gGi~~li~lLsS~~~evv~~AlttL~~L~~~-~sr~~----I-----~~p~ll~ll~~~~~~~~~~~~~~nla~~f  169 (178)
                      +.+.|-|+++..+|.-+|..++..++.+|+++..- +....    -     .----++.|..++.|+  |.-|...|-..
T Consensus       403 Lv~~giI~plcdlL~~~D~~ii~v~Ld~l~nil~~~e~~~~~~~n~~~~~IEe~ggldkiE~LQ~he--n~~Iy~~A~~I  480 (514)
T KOG0166|consen  403 LVEQGIIKPLCDLLTCPDVKIILVALDGLENILKVGEAEKNRGTNPLAIMIEEAGGLDKIENLQSHE--NEEIYKKAYKI  480 (514)
T ss_pred             HHHcCCchhhhhcccCCChHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHccChhHHHHhhccc--cHHHHHHHHHH
Confidence            78999999999999999999999999999999844 22221    1     1245678888999877  78999999999


Q ss_pred             HHhhccC
Q 030369          170 LDKHVTE  176 (178)
Q Consensus       170 L~~~~~~  176 (178)
                      +++|.+.
T Consensus       481 I~~yf~~  487 (514)
T KOG0166|consen  481 IDTYFSE  487 (514)
T ss_pred             HHHhcCC
Confidence            9999875

>smart00185 ARM Armadillo/beta-catenin-like repeats

Probab=97.68  E-value=7.7e-05  Score=45.15  Aligned_cols=40  Identities=15%  Similarity=0.155  Sum_probs=37.4

Q ss_pred             CcccHHHhhhccChHHHHhhhcCCcHHHHHHHHHHHHhhc
Q 030369           52 DPYNYTFLRQLNVLELFLDCITEPNEKLVEFGVGGICNAS   91 (178)
Q Consensus        52 DP~N~~~LrqL~vidlfld~L~~~n~~l~EfAiggLcNL~   91 (178)
                      +|.|+..+++.|+++.++.+|.++++.+++.|+++|.|++
T Consensus         1 ~~~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~aL~nl~   40 (41)
T smart00185        1 DDEQKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLS   40 (41)
T ss_pred             CcHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHc
Confidence            3559999999999999999999999999999999999997

Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.

>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]

Probab=97.34  E-value=0.0012  Score=61.95  Aligned_cols=136  Identities=19%  Similarity=0.215  Sum_probs=106.7

Q ss_pred             HHHHHHHHHhhcCChHHHHHHHHHHhhhhccCcccHHHhhhccChHHHHhhhcCC-----cHHHHHHHHHHHHhhcCCch
Q 030369           21 QYLQELVSQFQNSTDEERKEKIVANLANFAYDPYNYTFLRQLNVLELFLDCITEP-----NEKLVEFGVGGICNASVDPA   95 (178)
Q Consensus        21 ~ylq~LV~efq~t~~~e~keqvlanLaNfAyDP~N~~~LrqL~vidlfld~L~~~-----n~~l~EfAiggLcNL~~D~~   95 (178)
                      ++|+-+++-|..+ +....---...++|||+.-.|..|+.+=+.+.-+++||..+     |..++.-+..+|-|+..-..
T Consensus       315 ~~l~~~~sw~~S~-d~~l~t~g~LaigNfaR~D~~ci~~v~~~~~nkL~~~l~~~~~vdgnV~~qhA~lsALRnl~IPv~  393 (604)
T KOG4500|consen  315 QFLDFLESWFRSD-DSNLITMGSLAIGNFARRDDICIQLVQKDFLNKLISCLMQEKDVDGNVERQHACLSALRNLMIPVS  393 (604)
T ss_pred             HHHHHHHHHhcCC-chhHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhcCCCccchhHHHHHHHHHhccccCC
Confidence            4899999988776 44444444556899999999999999999999999999863     77788888899999999999


Q ss_pred             hhHHhhhcCChhHHHHhhcCCchhHHHHHHHHHHHhcCCc--cccccc-chHHHHHHHHhhhhcc
Q 030369           96 NAAIITKSGGIPLIIECLSSPVRNTVNHALGALYYLCSMS--TKEEIL-KPEVVDVIRRYAAAES  157 (178)
Q Consensus        96 nk~~I~~~gGi~~li~lLsS~~~evv~~AlttL~~L~~~~--sr~~I~-~p~ll~ll~~~~~~~~  157 (178)
                      ||..+...|-.+-|...|.+..|-++---+.|+--+.+.+  ...+.. -|.+++.|..|+.|++
T Consensus       394 nka~~~~aGvteaIL~~lk~~~ppv~fkllgTlrM~~d~qe~~a~eL~kn~~l~ekLv~Wsks~D  458 (604)
T KOG4500|consen  394 NKAHFAPAGVTEAILLQLKLASPPVTFKLLGTLRMIRDSQEYIACELAKNPELFEKLVDWSKSPD  458 (604)
T ss_pred             chhhccccchHHHHHHHHHhcCCcchHHHHHHHHHHHhchHHHHHHHhcCHHHHHHHHHhhhCCc
Confidence            9999998887787777775555556655566666666553  223333 4999999999999775

>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=97.32  E-value=0.0015  Score=56.86  Aligned_cols=138  Identities=19%  Similarity=0.186  Sum_probs=95.6

Q ss_pred             cCChHHHHHHHHHHhhhhc-cCcccHHHhhhccChHHHHhhhcC----CcHHHHHHHHHHHHhhcCCchhhHHhhhcCCh
Q 030369           32 NSTDEERKEKIVANLANFA-YDPYNYTFLRQLNVLELFLDCITE----PNEKLVEFGVGGICNASVDPANAAIITKSGGI  106 (178)
Q Consensus        32 ~t~~~e~keqvlanLaNfA-yDP~N~~~LrqL~vidlfld~L~~----~n~~l~EfAiggLcNL~~D~~nk~~I~~~gGi  106 (178)
                      +.++.-.+++...+|++++ ++|..-.... -++++.|++.|.+    ++..++..|+.+|.++.-.+..+..+.+.||+
T Consensus       115 ~~~D~~i~~~a~~iLt~Ll~~~~~~~~~~~-~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~~~~R~~f~~~~~v  193 (312)
T PF03224_consen  115 DRNDSFIQLKAAFILTSLLSQGPKRSEKLV-KEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRSKEYRQVFWKSNGV  193 (312)
T ss_dssp             S-SSHHHHHHHHHHHHHHHTSTTT--HHHH-HHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTSHHHHHHHHTHHHH
T ss_pred             cCCCHHHHHHHHHHHHHHHHcCCccccchH-HHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCcchhHHHHHhcCcH
Confidence            4557778999999999998 6665554433 5677888888875    46678899999999999999999999999999


Q ss_pred             hHHHHhh------c-CCchhHHHHHHHHHHHhcCC-ccccccc----chHHHHHHHHhhhhcccchhHHHhHHHHHHhhc
Q 030369          107 PLIIECL------S-SPVRNTVNHALGALYYLCSM-STKEEIL----KPEVVDVIRRYAAAESVNVSFSNLAKAFLDKHV  174 (178)
Q Consensus       107 ~~li~lL------s-S~~~evv~~AlttL~~L~~~-~sr~~I~----~p~ll~ll~~~~~~~~~~~~~~nla~~fL~~~~  174 (178)
                      +.++++|      + +.+.+..=+++-++|-|.=+ +...++.    .|.++++++.-..     .++.-+|-+-|--.+
T Consensus       194 ~~l~~iL~~~~~~~~~~~~Ql~Y~~ll~lWlLSF~~~~~~~~~~~~~i~~L~~i~~~~~K-----EKvvRv~la~l~Nl~  268 (312)
T PF03224_consen  194 SPLFDILRKQATNSNSSGIQLQYQALLCLWLLSFEPEIAEELNKKYLIPLLADILKDSIK-----EKVVRVSLAILRNLL  268 (312)
T ss_dssp             HHHHHHHH---------HHHHHHHHHHHHHHHTTSHHHHHHHHTTSHHHHHHHHHHH--S-----HHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHhhcccCCCCchhHHHHHHHHHHHHhcCHHHHHHHhccchHHHHHHHHHhccc-----chHHHHHHHHHHHHH
Confidence            9999999      2 22466667888888888744 3333343    4777777765443     467777766665544


Q ss_pred             c
Q 030369          175 T  175 (178)
Q Consensus       175 ~  175 (178)
                      +
T Consensus       269 ~  269 (312)
T PF03224_consen  269 S  269 (312)
T ss_dssp             S
T ss_pred             h
Confidence            3

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.

>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]

Probab=97.31  E-value=0.00061  Score=65.79  Aligned_cols=74  Identities=20%  Similarity=0.362  Sum_probs=66.7

Q ss_pred             hhhccChHHHHhhhcCCcHHHHHHHHHHHHhhcCCch-hhHHhhhcCChhHHHHhhcCCchhHHHHHHHHHHHhc
Q 030369           59 LRQLNVLELFLDCITEPNEKLVEFGVGGICNASVDPA-NAAIITKSGGIPLIIECLSSPVRNTVNHALGALYYLC  132 (178)
Q Consensus        59 LrqL~vidlfld~L~~~n~~l~EfAiggLcNL~~D~~-nk~~I~~~gGi~~li~lLsS~~~evv~~AlttL~~L~  132 (178)
                      +...+|+++++..|..++..+.--+.|+|||+.+|+. -|..++++|||+.+++.++++++++..+++-.|+.++
T Consensus       415 ~~~~dv~~plvqll~dp~~~i~~~~lgai~NlVmefs~~kskfl~~ngId~l~s~~~~~~~n~r~~~~~~Lr~l~  489 (678)
T KOG1293|consen  415 LKRNDVAQPLVQLLMDPEIMIMGITLGAICNLVMEFSNLKSKFLRNNGIDILESMLTDPDFNSRANSLWVLRHLM  489 (678)
T ss_pred             CccchhHHHHHHHhhCcchhHHHHHHHHHHHHHhhcccHHHHHHHcCcHHHHHHHhcCCCchHHHHHHHHHHHHH
Confidence            6778999999999988888888899999999999955 4778899999999999999999999999888887766

>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=97.25  E-value=0.0017  Score=56.45  Aligned_cols=132  Identities=20%  Similarity=0.166  Sum_probs=100.5

Q ss_pred             HHHHHHHHHhhc---CChHHHHHHHHHHhhhhccCcccHHHhhhccChHHHHhhh------c-CCcHHHHHHHHHHHHhh
Q 030369           21 QYLQELVSQFQN---STDEERKEKIVANLANFAYDPYNYTFLRQLNVLELFLDCI------T-EPNEKLVEFGVGGICNA   90 (178)
Q Consensus        21 ~ylq~LV~efq~---t~~~e~keqvlanLaNfAyDP~N~~~LrqL~vidlfld~L------~-~~n~~l~EfAiggLcNL   90 (178)
                      +.|+.+++=..+   +++.+.+.-++..|+++...|..+..+-+-+.++.+.+.|      + ..+..++=.++.|+|-|
T Consensus       146 ~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~~~~R~~f~~~~~v~~l~~iL~~~~~~~~~~~~Ql~Y~~ll~lWlL  225 (312)
T PF03224_consen  146 EALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRSKEYRQVFWKSNGVSPLFDILRKQATNSNSSGIQLQYQALLCLWLL  225 (312)
T ss_dssp             HHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTSHHHHHHHHTHHHHHHHHHHHH---------HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCcchhHHHHHhcCcHHHHHHHHHhhcccCCCCchhHHHHHHHHHHHH
Confidence            344444443332   2345667888899999999999999999999999999999      2 23788999999999999


Q ss_pred             cCCchhhHHhhhcCChhHHHHhh-cCCchhHHHHHHHHHHHhcCCcc---ccccc---chHHHHHHHHh
Q 030369           91 SVDPANAAIITKSGGIPLIIECL-SSPVRNTVNHALGALYYLCSMST---KEEIL---KPEVVDVIRRY  152 (178)
Q Consensus        91 ~~D~~nk~~I~~~gGi~~li~lL-sS~~~evv~~AlttL~~L~~~~s---r~~I~---~p~ll~ll~~~  152 (178)
                      +=++.....+...+=|+.+++++ .++.+-|+.=++.++-||+....   ...+.   .|++++.|+.-
T Consensus       226 SF~~~~~~~~~~~~~i~~L~~i~~~~~KEKvvRv~la~l~Nl~~~~~~~~~~~mv~~~~l~~l~~L~~r  294 (312)
T PF03224_consen  226 SFEPEIAEELNKKYLIPLLADILKDSIKEKVVRVSLAILRNLLSKAPKSNIELMVLCGLLKTLQNLSER  294 (312)
T ss_dssp             TTSHHHHHHHHTTSHHHHHHHHHHH--SHHHHHHHHHHHHHTTSSSSTTHHHHHHHH-HHHHHHHHHSS
T ss_pred             hcCHHHHHHHhccchHHHHHHHHHhcccchHHHHHHHHHHHHHhccHHHHHHHHHHccHHHHHHHHhcC
Confidence            99999999999998789999998 67789999999999999997632   22222   37888877643

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.

>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]

Probab=97.09  E-value=0.0012  Score=60.70  Aligned_cols=95  Identities=18%  Similarity=0.217  Sum_probs=81.5

Q ss_pred             HHHHHHHhhhhccCcccHHHh-hhccChHHHHhhhcCCcHHHHHHHHHHHHhhcCC-chhhHHhhhcCChhHHHHhhcCC
Q 030369           39 KEKIVANLANFAYDPYNYTFL-RQLNVLELFLDCITEPNEKLVEFGVGGICNASVD-PANAAIITKSGGIPLIIECLSSP  116 (178)
Q Consensus        39 keqvlanLaNfAyDP~N~~~L-rqL~vidlfld~L~~~n~~l~EfAiggLcNL~~D-~~nk~~I~~~gGi~~li~lLsS~  116 (178)
                      +-.+.=.|-|-|.-.-+..+. ...|++|+|+.+|.+.+..+.|-|+=+|-|.+-| +..+++|++.|.++++..+|-|.
T Consensus       132 qfEAaWalTNiaSGtt~QTkvVvd~~AVPlfiqlL~s~~~~V~eQavWALGNiAGDS~~~RD~vL~~galeplL~ll~ss  211 (526)
T COG5064         132 QFEAAWALTNIASGTTQQTKVVVDAGAVPLFIQLLSSTEDDVREQAVWALGNIAGDSEGCRDYVLQCGALEPLLGLLLSS  211 (526)
T ss_pred             HHHHHHHHhhhccCcccceEEEEeCCchHHHHHHHcCchHHHHHHHHHHhccccCCchhHHHHHHhcCchHHHHHHHHhc
Confidence            445556788999887777665 4689999999999999999999999999999988 78999999999999999998444


Q ss_pred             c--hhHHHHHHHHHHHhcC
Q 030369          117 V--RNTVNHALGALYYLCS  133 (178)
Q Consensus       117 ~--~evv~~AlttL~~L~~  133 (178)
                      .  ...+.++-=+|.+||.
T Consensus       212 ~~~ismlRn~TWtLSNlcR  230 (526)
T COG5064         212 AIHISMLRNATWTLSNLCR  230 (526)
T ss_pred             cchHHHHHHhHHHHHHhhC
Confidence            3  4778999999999993

>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells

Probab=97.08  E-value=0.013  Score=54.79  Aligned_cols=144  Identities=21%  Similarity=0.275  Sum_probs=99.6

Q ss_pred             HHHHhhCCCCCChHHHHHHHHHHhhcCC-hHHHHHHHHHHhhhhccCccc----------------HHHhhhccChHHHH
Q 030369            7 RQEERTGRSGTPRLQYLQELVSQFQNST-DEERKEKIVANLANFAYDPYN----------------YTFLRQLNVLELFL   69 (178)
Q Consensus         7 ~l~~rt~~~g~~R~~ylq~LV~efq~t~-~~e~keqvlanLaNfAyDP~N----------------~~~LrqL~vidlfl   69 (178)
                      .+.++..+  -.|++-|..|-++....+ -.+-.++++=+..|= .++.+                ...+ .-+..+.+.
T Consensus         8 ~l~~l~~~--~~~~~~L~~l~~~~~~~~~l~~~~~~~lf~~L~~-~~~e~v~~~~~iL~~~l~~~~~~~l-~~~~~~~L~   83 (503)
T PF10508_consen    8 LLEELSSK--AERLEALPELKTELSSSPFLERLPEPVLFDCLNT-SNREQVELICDILKRLLSALSPDSL-LPQYQPFLQ   83 (503)
T ss_pred             HHHHHhcc--cchHHHHHHHHHHHhhhhHHHhchHHHHHHHHhh-cChHHHHHHHHHHHHHHhccCHHHH-HHHHHHHHH
Confidence            34455544  678888888888777776 344455553333331 12222                2222 346678888


Q ss_pred             hhhcCCcHHHHHHHHHHHHhhcCCchhhHHhh-hcCChhHHHHhhcCCchhHHHHHHHHHHHhcCCc-ccccccchHHHH
Q 030369           70 DCITEPNEKLVEFGVGGICNASVDPANAAIIT-KSGGIPLIIECLSSPVRNTVNHALGALYYLCSMS-TKEEILKPEVVD  147 (178)
Q Consensus        70 d~L~~~n~~l~EfAiggLcNL~~D~~nk~~I~-~~gGi~~li~lLsS~~~evv~~AlttL~~L~~~~-sr~~I~~p~ll~  147 (178)
                      ..|..+++.+++.|.-.|.++.-++.....+. +.+-++.|+.||.+++.+|...|+.+|..++... .-..+..+.++.
T Consensus        84 ~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~~~i~~~L~~~d~~Va~~A~~~L~~l~~~~~~~~~l~~~~~~~  163 (503)
T PF10508_consen   84 RGLTHPSPKVRRLALKQLGRIARHSEGAAQLLVDNELLPLIIQCLRDPDLSVAKAAIKALKKLASHPEGLEQLFDSNLLS  163 (503)
T ss_pred             HHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhcCccHHHHHHHHHcCCcHHHHHHHHHHHHHHhCCchhHHHHhCcchHH
Confidence            88999999999999999999988877766654 4666799999999999999999999999998653 333444455555


Q ss_pred             HHHHhhh
Q 030369          148 VIRRYAA  154 (178)
Q Consensus       148 ll~~~~~  154 (178)
                      .|...-.
T Consensus       164 ~L~~l~~  170 (503)
T PF10508_consen  164 KLKSLMS  170 (503)
T ss_pred             HHHHHHh
Confidence            5554444

26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding

>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells

Probab=97.01  E-value=0.008  Score=56.10  Aligned_cols=121  Identities=13%  Similarity=0.192  Sum_probs=99.7

Q ss_pred             HHHHHHHHHHhhcCChHHHHHHHHHHhhhhccCccc-HHHhhhccChHHHHhhhcCCcHHHHHHHHHHHHhhcCCchhhH
Q 030369           20 LQYLQELVSQFQNSTDEERKEKIVANLANFAYDPYN-YTFLRQLNVLELFLDCITEPNEKLVEFGVGGICNASVDPANAA   98 (178)
Q Consensus        20 ~~ylq~LV~efq~t~~~e~keqvlanLaNfAyDP~N-~~~LrqL~vidlfld~L~~~n~~l~EfAiggLcNL~~D~~nk~   98 (178)
                      .+|.+.|..-.+ .++...|+-++..|.+.+.++.. ...+.+-++++.++.||..++..+.+-|+..|.+++-.+..-+
T Consensus        76 ~~~~~~L~~gL~-h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~~~i~~~L~~~d~~Va~~A~~~L~~l~~~~~~~~  154 (503)
T PF10508_consen   76 PQYQPFLQRGLT-HPSPKVRRLALKQLGRIARHSEGAAQLLVDNELLPLIIQCLRDPDLSVAKAAIKALKKLASHPEGLE  154 (503)
T ss_pred             HHHHHHHHHHhc-CCCHHHHHHHHHHHHHHhcCCHHHHHHhcCccHHHHHHHHHcCCcHHHHHHHHHHHHHHhCCchhHH
Confidence            445555555444 46889999999999999988766 5556778999999999999999999999999999999888888


Q ss_pred             HhhhcCChhHHHHhhcCCchhHHHHHHHHHHHhcCC--ccccccc
Q 030369           99 IITKSGGIPLIIECLSSPVRNTVNHALGALYYLCSM--STKEEIL  141 (178)
Q Consensus        99 ~I~~~gGi~~li~lLsS~~~evv~~AlttL~~L~~~--~sr~~I~  141 (178)
                      .++.+++++.|.++++.+++.+......++..++.-  .....+.
T Consensus       155 ~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~~~~~~  199 (503)
T PF10508_consen  155 QLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASHSPEAAEAVV  199 (503)
T ss_pred             HHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence            899999999999999887788888999999888733  3444444

26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding

>KOG4199 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.92  E-value=0.012  Score=54.11  Aligned_cols=123  Identities=17%  Similarity=0.206  Sum_probs=90.2

Q ss_pred             HHHHHHHHHhhhhccCcccHHHhhhccChHHHHhhhcCCcH-HHHHHHHHHH---HhhcCCchhhHHhhhcCChhHHHHh
Q 030369           37 ERKEKIVANLANFAYDPYNYTFLRQLNVLELFLDCITEPNE-KLVEFGVGGI---CNASVDPANAAIITKSGGIPLIIEC  112 (178)
Q Consensus        37 e~keqvlanLaNfAyDP~N~~~LrqL~vidlfld~L~~~n~-~l~EfAiggL---cNL~~D~~nk~~I~~~gGi~~li~l  112 (178)
                      +.--.....|--.|-.-.=.+.+.++|-++.++.|++..|+ ...+.+=-|+   --++-.-.+|..|.+.||.+.|+.+
T Consensus       257 ~~L~~l~~tl~~lAVr~E~C~~I~e~GGl~tl~~~i~d~n~~~~r~l~k~~lslLralAG~DsvKs~IV~~gg~~~ii~l  336 (461)
T KOG4199|consen  257 DSLVSLSTTLKALAVRDEICKSIAESGGLDTLLRCIDDSNEQGNRTLAKTCLSLLRALAGSDSVKSTIVEKGGLDKIITL  336 (461)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHhhhchhhHHHHHHHHHHHHHHHhCCCchHHHHHHhcChHHHHHH
Confidence            33334455566666555557889999999999999998543 3344444444   4445667899999999999999999


Q ss_pred             h--cCCchhHHHHHHHHHHHhc--CC-cccccccc---hHHHHHHHHhhhhcccc
Q 030369          113 L--SSPVRNTVNHALGALYYLC--SM-STKEEILK---PEVVDVIRRYAAAESVN  159 (178)
Q Consensus       113 L--sS~~~evv~~AlttL~~L~--~~-~sr~~I~~---p~ll~ll~~~~~~~~~~  159 (178)
                      +  .+.+|.|+..++.++.+|+  .| .|++.|-.   ...++-|+++.++--++
T Consensus       337 ~~~h~~~p~Vi~~~~a~i~~l~LR~pdhsa~~ie~G~a~~avqAmkahP~~a~vQ  391 (461)
T KOG4199|consen  337 ALRHSDDPLVIQEVMAIISILCLRSPDHSAKAIEAGAADLAVQAMKAHPVAAQVQ  391 (461)
T ss_pred             HHHcCCChHHHHHHHHHHHHHHhcCcchHHHHHhcchHHHHHHHHHhCcHHHHHH
Confidence            8  5667999998888888887  33 57887773   77788888887755333

>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]

Probab=96.86  E-value=0.0033  Score=61.54  Aligned_cols=83  Identities=19%  Similarity=0.268  Sum_probs=73.2

Q ss_pred             CcccHHHhhhccChHHHHhhhcCCcHHHHHHHHHHHHhhcCC---chhhHHhhhcCChhHHHHhhc-CCchhHHHHHHHH
Q 030369           52 DPYNYTFLRQLNVLELFLDCITEPNEKLVEFGVGGICNASVD---PANAAIITKSGGIPLIIECLS-SPVRNTVNHALGA  127 (178)
Q Consensus        52 DP~N~~~LrqL~vidlfld~L~~~n~~l~EfAiggLcNL~~D---~~nk~~I~~~gGi~~li~lLs-S~~~evv~~Altt  127 (178)
                      |-.=+.-.|+++-|+.+++.|..+++.++..|.|+|=||+-+   -.||..|.+.+||+.++++|. ..|-||....-.+
T Consensus       264 d~~ik~~vrqlggI~kLv~Ll~~~~~evq~~acgaLRNLvf~~~~~~NKlai~~~~Gv~~l~~~Lr~t~D~ev~e~iTg~  343 (717)
T KOG1048|consen  264 DNKIKSRVRQLGGIPKLVALLDHRNDEVQRQACGALRNLVFGKSTDSNKLAIKELNGVPTLVRLLRHTQDDEVRELITGI  343 (717)
T ss_pred             hHHHHHHHHHhccHHHHHHHhcCCcHHHHHHHHHHHHhhhcccCCcccchhhhhcCChHHHHHHHHhhcchHHHHHHHHH
Confidence            444556779999999999999999999999999999999854   348999999999999999994 5789999999999


Q ss_pred             HHHhcCC
Q 030369          128 LYYLCSM  134 (178)
Q Consensus       128 L~~L~~~  134 (178)
                      ||+|.+.
T Consensus       344 LWNLSS~  350 (717)
T KOG1048|consen  344 LWNLSSN  350 (717)
T ss_pred             Hhcccch
Confidence            9999855

>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A

Probab=96.82  E-value=0.0091  Score=41.31  Aligned_cols=86  Identities=14%  Similarity=0.254  Sum_probs=66.2

Q ss_pred             HHHHHHHhhcCChHHHHHHHHHHhhhhccCcccHHHhhhccChHHHHhhhcCCcHHHHHHHHHHHHhhcCCchhhHHhhh
Q 030369           23 LQELVSQFQNSTDEERKEKIVANLANFAYDPYNYTFLRQLNVLELFLDCITEPNEKLVEFGVGGICNASVDPANAAIITK  102 (178)
Q Consensus        23 lq~LV~efq~t~~~e~keqvlanLaNfAyDP~N~~~LrqL~vidlfld~L~~~n~~l~EfAiggLcNL~~D~~nk~~I~~  102 (178)
                      |..|+..+.+.++...|..++..|.++.          .-.+++.+++.+..+|+.+...|+-+|..+-          .
T Consensus         1 i~~L~~~l~~~~~~~vr~~a~~~L~~~~----------~~~~~~~L~~~l~d~~~~vr~~a~~aL~~i~----------~   60 (88)
T PF13646_consen    1 IPALLQLLQNDPDPQVRAEAARALGELG----------DPEAIPALIELLKDEDPMVRRAAARALGRIG----------D   60 (88)
T ss_dssp             HHHHHHHHHTSSSHHHHHHHHHHHHCCT----------HHHHHHHHHHHHTSSSHHHHHHHHHHHHCCH----------H
T ss_pred             CHHHHHHHhcCCCHHHHHHHHHHHHHcC----------CHhHHHHHHHHHcCCCHHHHHHHHHHHHHhC----------C
Confidence            4567788878889999999998888542          2277999999999999999999999999872          2


Q ss_pred             cCChhHHHHhhcCCchhH-HHHHHHHH
Q 030369          103 SGGIPLIIECLSSPVRNT-VNHALGAL  128 (178)
Q Consensus       103 ~gGi~~li~lLsS~~~ev-v~~AlttL  128 (178)
                      ...++.|++++.+++..+ ...|+.+|
T Consensus        61 ~~~~~~L~~~l~~~~~~~vr~~a~~aL   87 (88)
T PF13646_consen   61 PEAIPALIKLLQDDDDEVVREAAAEAL   87 (88)
T ss_dssp             HHTHHHHHHHHTC-SSHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCCcHHHHHHHHhhc
Confidence            346889999996655444 46666654

>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]

Probab=96.75  E-value=0.0025  Score=52.03  Aligned_cols=103  Identities=19%  Similarity=0.213  Sum_probs=79.6

Q ss_pred             HHHhhhcC-CcHHHHHHHHHHHHhhcCCchhhHHhhhcCChhHHHHhhcCCchhHHHHHHHHHHHhcCC-ccccccc---
Q 030369           67 LFLDCITE-PNEKLVEFGVGGICNASVDPANAAIITKSGGIPLIIECLSSPVRNTVNHALGALYYLCSM-STKEEIL---  141 (178)
Q Consensus        67 lfld~L~~-~n~~l~EfAiggLcNL~~D~~nk~~I~~~gGi~~li~lLsS~~~evv~~AlttL~~L~~~-~sr~~I~---  141 (178)
                      -+++--.+ .|..-.|--++-|+|.+-||.|-.+..+-+.++..+.+|+.+++-.|..+|+.|++||-+ .+.+.|+   
T Consensus        20 ~LV~efq~tt~~eakeqv~ANLANFAYDP~Nys~Lrql~vLdlFvdsl~e~ne~LvefgIgglCNlC~d~~n~~~I~ea~   99 (173)
T KOG4646|consen   20 HLVDEFQTTTNIEAKEQVTANLANFAYDPINYSHLRQLDVLDLFVDSLEEQNELLVEFGIGGLCNLCLDKTNAKFIREAL   99 (173)
T ss_pred             HHHHHHHHhccHHHHHHHHHHHHhhccCcchHHHHHHhhHHHHHHHHhhcccHHHHHHhHHHHHhhccChHHHHHHHHhc
Confidence            34444443 366778888999999999999999999999999999999999999999999999999987 4666666   


Q ss_pred             -chHHHHHHHHhhhhcccchhHHHhHHHHHHhhcc
Q 030369          142 -KPEVVDVIRRYAAAESVNVSFSNLAKAFLDKHVT  175 (178)
Q Consensus       142 -~p~ll~ll~~~~~~~~~~~~~~nla~~fL~~~~~  175 (178)
                       .|-++.++     |+- +.-..+-|..||.--|-
T Consensus       100 g~plii~~l-----ssp-~e~tv~sa~~~l~~l~~  128 (173)
T KOG4646|consen  100 GLPLIIFVL-----SSP-PEITVHSAALFLQLLEF  128 (173)
T ss_pred             CCceEEeec-----CCC-hHHHHHHHHHHHHHhcC
Confidence             47666665     331 34556666666654443

>PRK09687 putative lyase; Provisional

Probab=96.27  E-value=0.018  Score=50.11  Aligned_cols=31  Identities=3%  Similarity=-0.083  Sum_probs=25.0

Q ss_pred             HHHHHHHHHHhhcCChHHHHHHHHHHhhhhc
Q 030369           20 LQYLQELVSQFQNSTDEERKEKIVANLANFA   50 (178)
Q Consensus        20 ~~ylq~LV~efq~t~~~e~keqvlanLaNfA   50 (178)
                      .+-+..|..-+.+.++.+.|..++..|.++.
T Consensus        89 ~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~  119 (280)
T PRK09687         89 DNVFNILNNLALEDKSACVRASAINATGHRC  119 (280)
T ss_pred             HHHHHHHHHHHhcCCCHHHHHHHHHHHhccc
Confidence            4577777777777788999999999998885

>KOG4199 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.25  E-value=0.11  Score=48.02  Aligned_cols=145  Identities=15%  Similarity=0.188  Sum_probs=110.9

Q ss_pred             HHHHhhcCChHHHH---HHHHHHhhhhccCcccHHHhhhccChHHHHhhhc--CCcHHHHHHHHHHHHhhcCC-chhhHH
Q 030369           26 LVSQFQNSTDEERK---EKIVANLANFAYDPYNYTFLRQLNVLELFLDCIT--EPNEKLVEFGVGGICNASVD-PANAAI   99 (178)
Q Consensus        26 LV~efq~t~~~e~k---eqvlanLaNfAyDP~N~~~LrqL~vidlfld~L~--~~n~~l~EfAiggLcNL~~D-~~nk~~   99 (178)
                      |+...-++..++.|   .+++.-|--.|-.-.|+.++.+-|..|.++..+.  .+||.+++-+.++||-+|+- |.+...
T Consensus       288 l~~~i~d~n~~~~r~l~k~~lslLralAG~DsvKs~IV~~gg~~~ii~l~~~h~~~p~Vi~~~~a~i~~l~LR~pdhsa~  367 (461)
T KOG4199|consen  288 LLRCIDDSNEQGNRTLAKTCLSLLRALAGSDSVKSTIVEKGGLDKIITLALRHSDDPLVIQEVMAIISILCLRSPDHSAK  367 (461)
T ss_pred             HHHHHhhhchhhHHHHHHHHHHHHHHHhCCCchHHHHHHhcChHHHHHHHHHcCCChHHHHHHHHHHHHHHhcCcchHHH
Confidence            34444455555444   6889999999989999999999999999999887  46999999999999999976 999999


Q ss_pred             hhhcCChhHHHHhh-cCCc-hhHHHHHHHHHHHhcCC--cccccccchHHHHHHHHhhhhcccchhHHHhHHHHHHhh
Q 030369          100 ITKSGGIPLIIECL-SSPV-RNTVNHALGALYYLCSM--STKEEILKPEVVDVIRRYAAAESVNVSFSNLAKAFLDKH  173 (178)
Q Consensus       100 I~~~gGi~~li~lL-sS~~-~evv~~AlttL~~L~~~--~sr~~I~~p~ll~ll~~~~~~~~~~~~~~nla~~fL~~~  173 (178)
                      ++|.||-...++-+ ..|. -.++.+|-.++-|++.-  +.++.+..--+=++++ -+.+.  |+-....|++=|-|-
T Consensus       368 ~ie~G~a~~avqAmkahP~~a~vQrnac~~IRNiv~rs~~~~~~~l~~GiE~Li~-~A~~~--h~tce~~akaALRDL  442 (461)
T KOG4199|consen  368 AIEAGAADLAVQAMKAHPVAAQVQRNACNMIRNIVVRSAENRTILLANGIEKLIR-TAKAN--HETCEAAAKAALRDL  442 (461)
T ss_pred             HHhcchHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHhhhhccchHHhccHHHHHH-HHHhc--CccHHHHHHHHHHhc
Confidence            99999999999998 4443 57889999999999844  3455555444444443 33322  566777888877764

>PF05536 Neurochondrin: Neurochondrin

Probab=96.21  E-value=0.027  Score=53.52  Aligned_cols=100  Identities=22%  Similarity=0.292  Sum_probs=86.7

Q ss_pred             ChHHHHHHHHHHhhhhccCcccHHHhhhccChHHHHhhhcCCcH-HHHHHHHHHHHhhcCCchhhHHhhhcCChhHHHHh
Q 030369           34 TDEERKEKIVANLANFAYDPYNYTFLRQLNVLELFLDCITEPNE-KLVEFGVGGICNASVDPANAAIITKSGGIPLIIEC  112 (178)
Q Consensus        34 ~~~e~keqvlanLaNfAyDP~N~~~LrqL~vidlfld~L~~~n~-~l~EfAiggLcNL~~D~~nk~~I~~~gGi~~li~l  112 (178)
                      +..+.+.=.++=|+-|+.||.--.+=.-++-||.|+++++.... .+++-|..+|+.++.-|..++.+.+.|+|+.+.+.
T Consensus        69 ~~~~~~~LavsvL~~f~~~~~~a~~~~~~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ias~~~G~~aLl~~g~v~~L~ei  148 (543)
T PF05536_consen   69 PPEEYLSLAVSVLAAFCRDPELASSPQMVSRIPLLLEILSSSSDLETVDDALQCLLAIASSPEGAKALLESGAVPALCEI  148 (543)
T ss_pred             CHHHHHHHHHHHHHHHcCChhhhcCHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHcCcHhHHHHHhcCCHHHHHHH
Confidence            45667777788899999999998887778999999999998776 99999999999999999999999999999999999


Q ss_pred             hcCCchhHHHHHHHHHHHhcCC
Q 030369          113 LSSPVRNTVNHALGALYYLCSM  134 (178)
Q Consensus       113 LsS~~~evv~~AlttL~~L~~~  134 (178)
                      ..++ +-..-.|+..+.+|+..
T Consensus       149 ~~~~-~~~~E~Al~lL~~Lls~  169 (543)
T PF05536_consen  149 IPNQ-SFQMEIALNLLLNLLSR  169 (543)
T ss_pred             HHhC-cchHHHHHHHHHHHHHh
Confidence            9774 55667777777777754

>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A

Probab=96.21  E-value=0.02  Score=39.60  Aligned_cols=58  Identities=21%  Similarity=0.281  Sum_probs=49.0

Q ss_pred             hHHHHhhh-cCCcHHHHHHHHHHHHhhcCCchhhHHhhhcCChhHHHHhhcCCchhHHHHHHHHHHHhc
Q 030369           65 LELFLDCI-TEPNEKLVEFGVGGICNASVDPANAAIITKSGGIPLIIECLSSPVRNTVNHALGALYYLC  132 (178)
Q Consensus        65 idlfld~L-~~~n~~l~EfAiggLcNL~~D~~nk~~I~~~gGi~~li~lLsS~~~evv~~AlttL~~L~  132 (178)
                      ||.+++.| .++++.++..|+-+|+++. ++         ..+|.|+++++++++.|...|+.+|-.+-
T Consensus         1 i~~L~~~l~~~~~~~vr~~a~~~L~~~~-~~---------~~~~~L~~~l~d~~~~vr~~a~~aL~~i~   59 (88)
T PF13646_consen    1 IPALLQLLQNDPDPQVRAEAARALGELG-DP---------EAIPALIELLKDEDPMVRRAAARALGRIG   59 (88)
T ss_dssp             HHHHHHHHHTSSSHHHHHHHHHHHHCCT-HH---------HHHHHHHHHHTSSSHHHHHHHHHHHHCCH
T ss_pred             CHHHHHHHhcCCCHHHHHHHHHHHHHcC-CH---------hHHHHHHHHHcCCCHHHHHHHHHHHHHhC
Confidence            57899999 7789999999999999652 11         34899999999999999999999998763

>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1

Probab=96.17  E-value=0.041  Score=44.31  Aligned_cols=92  Identities=16%  Similarity=0.165  Sum_probs=67.1

Q ss_pred             cHHHHHHHHHHHHhhcCCchhhHHhhhcCChhHHHHhhcCCchhHHHHHHHHHHHhcCCccccccc-chHHHHHHHHhhh
Q 030369           76 NEKLVEFGVGGICNASVDPANAAIITKSGGIPLIIECLSSPVRNTVNHALGALYYLCSMSTKEEIL-KPEVVDVIRRYAA  154 (178)
Q Consensus        76 n~~l~EfAiggLcNL~~D~~nk~~I~~~gGi~~li~lLsS~~~evv~~AlttL~~L~~~~sr~~I~-~p~ll~ll~~~~~  154 (178)
                      ++.+.-.++.++|=||.-+++-..-    -+|.+..||+++++.|-..|+.+|..|+...   -|. .+.++..+...-.
T Consensus         1 ~~~vR~n~i~~l~DL~~r~~~~ve~----~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d---~ik~k~~l~~~~l~~l~   73 (178)
T PF12717_consen    1 DPSVRNNAIIALGDLCIRYPNLVEP----YLPNLYKCLRDEDPLVRKTALLVLSHLILED---MIKVKGQLFSRILKLLV   73 (178)
T ss_pred             CHHHHHHHHHHHHHHHHhCcHHHHh----HHHHHHHHHCCCCHHHHHHHHHHHHHHHHcC---ceeehhhhhHHHHHHHc
Confidence            4667788899999998876653332    3899999999999999999999999998541   111 2444233322223


Q ss_pred             hcccchhHHHhHHHHHHhhccC
Q 030369          155 AESVNVSFSNLAKAFLDKHVTE  176 (178)
Q Consensus       155 ~~~~~~~~~nla~~fL~~~~~~  176 (178)
                        +.|+.+++.|..|+.+...+
T Consensus        74 --D~~~~Ir~~A~~~~~e~~~~   93 (178)
T PF12717_consen   74 --DENPEIRSLARSFFSELLKK   93 (178)
T ss_pred             --CCCHHHHHHHHHHHHHHHHh
Confidence              56899999999999887544

>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1

Probab=96.06  E-value=0.024  Score=49.55  Aligned_cols=84  Identities=17%  Similarity=0.248  Sum_probs=69.0

Q ss_pred             cCcccHHHhhhccChHHHHhhhcCC-cHHHHHHHHHHHHhhcCC-chhhHHhhhcCChhHHHHhh--cCCchhHHHHHHH
Q 030369           51 YDPYNYTFLRQLNVLELFLDCITEP-NEKLVEFGVGGICNASVD-PANAAIITKSGGIPLIIECL--SSPVRNTVNHALG  126 (178)
Q Consensus        51 yDP~N~~~LrqL~vidlfld~L~~~-n~~l~EfAiggLcNL~~D-~~nk~~I~~~gGi~~li~lL--sS~~~evv~~Alt  126 (178)
                      -.|.=+....+-..+.+|++.|++. .+.+.--++-.|..+.+| |.|...+.+.+|+..|+.++  ++.+.++..-.++
T Consensus       121 LHp~Sr~lF~r~~~m~lll~LL~~~~~~~i~~a~L~tLv~iLld~p~N~r~FE~~~Gl~~v~~llk~~~~~~~~r~K~~E  200 (257)
T PF08045_consen  121 LHPPSRKLFHREQNMELLLDLLSPSNPPAIQSACLDTLVCILLDSPENQRDFEELNGLSTVCSLLKSKSTDRELRLKCIE  200 (257)
T ss_pred             cCchHHHHHhhhhhHHHHHHHhccCCCchHHHHHHHHHHHHHHcChHHHHHHHHhCCHHHHHHHHccccccHHHhHHHHH
Confidence            4677788888899999999999664 556666667666666666 99999999999999999999  4446889899999


Q ss_pred             HHHHhcCC
Q 030369          127 ALYYLCSM  134 (178)
Q Consensus       127 tL~~L~~~  134 (178)
                      .||+.+.|
T Consensus       201 FL~fyl~~  208 (257)
T PF08045_consen  201 FLYFYLMP  208 (257)
T ss_pred             HHHHHHcc
Confidence            99988866

Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].

>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]

Probab=95.87  E-value=0.0069  Score=63.45  Aligned_cols=79  Identities=20%  Similarity=0.330  Sum_probs=73.1

Q ss_pred             HHHhhhccChHHHHhhhcCCcHHHHHHHHHHHHhhcC-CchhhHHhhhcCChhHHHHhhcCCchhHHHHHHHHHHHhcCC
Q 030369           56 YTFLRQLNVLELFLDCITEPNEKLVEFGVGGICNASV-DPANAAIITKSGGIPLIIECLSSPVRNTVNHALGALYYLCSM  134 (178)
Q Consensus        56 ~~~LrqL~vidlfld~L~~~n~~l~EfAiggLcNL~~-D~~nk~~I~~~gGi~~li~lLsS~~~evv~~AlttL~~L~~~  134 (178)
                      +..||+-++|--+|..|.+..-.+|-.|-|.||||++ +|.-+++|.+.|.++.+.+|++|.+..+..-+..+|-||++-
T Consensus       523 RQILR~~NCLq~LLQ~LKS~SLTiVSNaCGTLWNLSAR~p~DQq~LwD~gAv~mLrnLIhSKhkMIa~GSaaALrNLln~  602 (2195)
T KOG2122|consen  523 RQILRRHNCLQTLLQHLKSHSLTIVSNACGTLWNLSARSPEDQQMLWDDGAVPMLRNLIHSKHKMIAMGSAAALRNLLNF  602 (2195)
T ss_pred             HHHHHHhhHHHHHHHHhhhcceEEeecchhhhhhhhcCCHHHHHHHHhcccHHHHHHHHhhhhhhhhhhHHHHHHHHhcC
Confidence            3568999999999999999999999999999999975 699999999999999999999998899999999999999844

>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=95.69  E-value=0.19  Score=45.45  Aligned_cols=123  Identities=22%  Similarity=0.285  Sum_probs=85.8

Q ss_pred             CCCChHHHHHHHHHHhh----------------cCChHHHHHHHHHHhhhhc-cCcccHHHhhhccChHHHHhhhcCCcH
Q 030369           15 SGTPRLQYLQELVSQFQ----------------NSTDEERKEKIVANLANFA-YDPYNYTFLRQLNVLELFLDCITEPNE   77 (178)
Q Consensus        15 ~g~~R~~ylq~LV~efq----------------~t~~~e~keqvlanLaNfA-yDP~N~~~LrqL~vidlfld~L~~~n~   77 (178)
                      +...|.+|++.|+--.-                .|++.+.|.=+--.+..++ .||. --.|    +++.+..-|..+|+
T Consensus        19 ~~~~~~~~l~kli~~~~~G~~~~~~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~~~~-~~~l----~~n~l~kdl~~~n~   93 (526)
T PF01602_consen   19 DISKKKEALKKLIYLMMLGYDISFLFMEVIKLISSKDLELKRLGYLYLSLYLHEDPE-LLIL----IINSLQKDLNSPNP   93 (526)
T ss_dssp             HHHHHHHHHHHHHHHHHTT---GSTHHHHHCTCSSSSHHHHHHHHHHHHHHTTTSHH-HHHH----HHHHHHHHHCSSSH
T ss_pred             CHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHhCCCCHHHHHHHHHHHHHHhhcchh-HHHH----HHHHHHHhhcCCCH
Confidence            33457778887765432                3456666665555555666 3444 1122    78888888999999


Q ss_pred             HHHHHHHHHHHhhcCCchhhHHhhhcCChhHHHHhhcCCchhHHHHHHHHHHHhcCC--cc-cccccchHHHHHH
Q 030369           78 KLVEFGVGGICNASVDPANAAIITKSGGIPLIIECLSSPVRNTVNHALGALYYLCSM--ST-KEEILKPEVVDVI  149 (178)
Q Consensus        78 ~l~EfAiggLcNL~~D~~nk~~I~~~gGi~~li~lLsS~~~evv~~AlttL~~L~~~--~s-r~~I~~p~ll~ll  149 (178)
                      .++-.|+-+|||++ +|+-.+.+     ++.|.++|+++++.|-+.|+.+++.+...  +. ... ..|.+.++|
T Consensus        94 ~~~~lAL~~l~~i~-~~~~~~~l-----~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p~~~~~~-~~~~l~~lL  161 (526)
T PF01602_consen   94 YIRGLALRTLSNIR-TPEMAEPL-----IPDVIKLLSDPSPYVRKKAALALLKIYRKDPDLVEDE-LIPKLKQLL  161 (526)
T ss_dssp             HHHHHHHHHHHHH--SHHHHHHH-----HHHHHHHHHSSSHHHHHHHHHHHHHHHHHCHCCHHGG-HHHHHHHHT
T ss_pred             HHHHHHHhhhhhhc-ccchhhHH-----HHHHHHHhcCCchHHHHHHHHHHHHHhccCHHHHHHH-HHHHHhhhc
Confidence            99999999999988 66666665     78999999999999999999999888733  22 222 355555555

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.

>PRK09687 putative lyase; Provisional

Probab=95.18  E-value=0.13  Score=44.78  Aligned_cols=91  Identities=9%  Similarity=0.080  Sum_probs=67.7

Q ss_pred             HHHHHHHhhcCChHHHHHHHHHHhhhhccCcccHHHhhhccChHHHHhhhcCCcHHHHHHHHHHHHhhcCCchhhHHhhh
Q 030369           23 LQELVSQFQNSTDEERKEKIVANLANFAYDPYNYTFLRQLNVLELFLDCITEPNEKLVEFGVGGICNASVDPANAAIITK  102 (178)
Q Consensus        23 lq~LV~efq~t~~~e~keqvlanLaNfAyDP~N~~~LrqL~vidlfld~L~~~n~~l~EfAiggLcNL~~D~~nk~~I~~  102 (178)
                      +..|..-+.+. +.+.|..++..|.++.          .-.+++.++..|..++..+...|+.+|-++..+..       
T Consensus       130 ~~~l~~~~~D~-~~~VR~~a~~aLg~~~----------~~~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~~~~-------  191 (280)
T PRK09687        130 VEQSQITAFDK-STNVRFAVAFALSVIN----------DEAAIPLLINLLKDPNGDVRNWAAFALNSNKYDNP-------  191 (280)
T ss_pred             HHHHHHHhhCC-CHHHHHHHHHHHhccC----------CHHHHHHHHHHhcCCCHHHHHHHHHHHhcCCCCCH-------
Confidence            33443333444 6788889998887543          33489999999999999999999999999843211       


Q ss_pred             cCChhHHHHhhcCCchhHHHHHHHHHHHhc
Q 030369          103 SGGIPLIIECLSSPVRNTVNHALGALYYLC  132 (178)
Q Consensus       103 ~gGi~~li~lLsS~~~evv~~AlttL~~L~  132 (178)
                       ..++.|++.|.+++++|...|+..|-.+-
T Consensus       192 -~~~~~L~~~L~D~~~~VR~~A~~aLg~~~  220 (280)
T PRK09687        192 -DIREAFVAMLQDKNEEIRIEAIIGLALRK  220 (280)
T ss_pred             -HHHHHHHHHhcCCChHHHHHHHHHHHccC
Confidence             23678999999999999988888886543

>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments

Probab=94.87  E-value=0.34  Score=45.20  Aligned_cols=116  Identities=14%  Similarity=0.072  Sum_probs=98.7

Q ss_pred             hHHHHHHHHHHhhcCChHHHHHHHHHHhhhhccCcccHHHhhhccChHHHHhhhcCC--cHHHHHHHHHHHHhhcCCchh
Q 030369           19 RLQYLQELVSQFQNSTDEERKEKIVANLANFAYDPYNYTFLRQLNVLELFLDCITEP--NEKLVEFGVGGICNASVDPAN   96 (178)
Q Consensus        19 R~~ylq~LV~efq~t~~~e~keqvlanLaNfAyDP~N~~~LrqL~vidlfld~L~~~--n~~l~EfAiggLcNL~~D~~n   96 (178)
                      -..|++-|.+.++..++.+.+.-++.-|++...=|.-+...-+.+.++.+++.|+..  +..++=.++.|+|=|+=++..
T Consensus       141 l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~~~~R~~f~~~~~v~~L~~~L~~~~~~~Ql~Y~~ll~lWlLSF~~~~  220 (429)
T cd00256         141 LDYYFNWLKEQLNNITNNDYVQTAARCLQMLLRVDEYRFAFVLADGVPTLVKLLSNATLGFQLQYQSIFCIWLLTFNPHA  220 (429)
T ss_pred             HHHHHHHHHHHhhccCCcchHHHHHHHHHHHhCCchHHHHHHHccCHHHHHHHHhhccccHHHHHHHHHHHHHHhccHHH
Confidence            334667788888777778888888888999988888888888888999999999863  568888999999999999887


Q ss_pred             hHHhhhcCChhHHHHhh-cCCchhHHHHHHHHHHHhcCC
Q 030369           97 AAIITKSGGIPLIIECL-SSPVRNTVNHALGALYYLCSM  134 (178)
Q Consensus        97 k~~I~~~gGi~~li~lL-sS~~~evv~~AlttL~~L~~~  134 (178)
                      .+...+.+-|+.+++++ .++.+-|+.=++.+|.||++.
T Consensus       221 ~~~~~~~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~~  259 (429)
T cd00256         221 AEVLKRLSLIQDLSDILKESTKEKVIRIVLAIFRNLISK  259 (429)
T ss_pred             HHhhccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhc
Confidence            77777778889999999 777899999999999999975

The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.

>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=94.67  E-value=0.42  Score=43.25  Aligned_cols=92  Identities=17%  Similarity=0.204  Sum_probs=71.1

Q ss_pred             CChHHHHHHHHHHhhhhccCcccHHHhhhccChHHHHhhhcCCcHHHHHHHHHHHHhhc-CCchhhHHhhhcCChhHHHH
Q 030369           33 STDEERKEKIVANLANFAYDPYNYTFLRQLNVLELFLDCITEPNEKLVEFGVGGICNAS-VDPANAAIITKSGGIPLIIE  111 (178)
Q Consensus        33 t~~~e~keqvlanLaNfAyDP~N~~~LrqL~vidlfld~L~~~n~~l~EfAiggLcNL~-~D~~nk~~I~~~gGi~~li~  111 (178)
                      ++++..+--++-.|+|++ +|.   ....  +++....+|..+++.+..-|+.|++.+. .||..-..    +=++.+.+
T Consensus        90 ~~n~~~~~lAL~~l~~i~-~~~---~~~~--l~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p~~~~~----~~~~~l~~  159 (526)
T PF01602_consen   90 SPNPYIRGLALRTLSNIR-TPE---MAEP--LIPDVIKLLSDPSPYVRKKAALALLKIYRKDPDLVED----ELIPKLKQ  159 (526)
T ss_dssp             SSSHHHHHHHHHHHHHH--SHH---HHHH--HHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCHCCHHG----GHHHHHHH
T ss_pred             CCCHHHHHHHHhhhhhhc-ccc---hhhH--HHHHHHHHhcCCchHHHHHHHHHHHHHhccCHHHHHH----HHHHHHhh
Confidence            357788888899999988 333   2322  4788889999999999999999999996 45554222    01789999


Q ss_pred             hhcCCchhHHHHHHHHHHHh-cCC
Q 030369          112 CLSSPVRNTVNHALGALYYL-CSM  134 (178)
Q Consensus       112 lLsS~~~evv~~AlttL~~L-~~~  134 (178)
                      +|+++++.|+.+|+.+++.+ ..+
T Consensus       160 lL~d~~~~V~~~a~~~l~~i~~~~  183 (526)
T PF01602_consen  160 LLSDKDPSVVSAALSLLSEIKCND  183 (526)
T ss_dssp             HTTHSSHHHHHHHHHHHHHHHCTH
T ss_pred             hccCCcchhHHHHHHHHHHHccCc
Confidence            99999999999999999999 544

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.

>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=94.54  E-value=0.24  Score=47.71  Aligned_cols=133  Identities=13%  Similarity=0.177  Sum_probs=106.0

Q ss_pred             HHHHHHHHhhcCChHHHHHHHHHHhhhhccCcccHHHhhhccChHHHHhhhcCCcHHHHHHHHHHHHhhcCCchhhHHhh
Q 030369           22 YLQELVSQFQNSTDEERKEKIVANLANFAYDPYNYTFLRQLNVLELFLDCITEPNEKLVEFGVGGICNASVDPANAAIIT  101 (178)
Q Consensus        22 ylq~LV~efq~t~~~e~keqvlanLaNfAyDP~N~~~LrqL~vidlfld~L~~~n~~l~EfAiggLcNL~~D~~nk~~I~  101 (178)
                      -...|+.=|+-+ .+|.+..++-=|.||.+|..+++.+.+.|.+|-+...|.+++-  +..|.--+.++|.|-..|.-+.
T Consensus       346 iveKL~klfp~~-h~dL~~~tl~LlfNlSFD~glr~KMv~~GllP~l~~ll~~d~~--~~iA~~~lYh~S~dD~~K~Mfa  422 (791)
T KOG1222|consen  346 IVEKLLKLFPIQ-HPDLRKATLMLLFNLSFDSGLRPKMVNGGLLPHLASLLDSDTK--HGIALNMLYHLSCDDDAKAMFA  422 (791)
T ss_pred             HHHHHHHhcCCC-CHHHHHHHHHHhhhccccccccHHHhhccchHHHHHHhCCccc--chhhhhhhhhhccCcHHHHHHH
Confidence            345677777766 6778888899999999999999999999999999999987653  5667888999999999999998


Q ss_pred             hcCChhHHHHhh-cCCchhHHHHHHHHHHHhcCCccccccc-----------------chHHHHHHHHhhhhcc
Q 030369          102 KSGGIPLIIECL-SSPVRNTVNHALGALYYLCSMSTKEEIL-----------------KPEVVDVIRRYAAAES  157 (178)
Q Consensus       102 ~~gGi~~li~lL-sS~~~evv~~AlttL~~L~~~~sr~~I~-----------------~p~ll~ll~~~~~~~~  157 (178)
                      --..|+.++.-+ +-.+++|-+.-|....+|+-..-...+.                 .|-+++.++..++|+.
T Consensus       423 yTdci~~lmk~v~~~~~~~vdl~lia~ciNl~lnkRNaQlvceGqgL~~LM~ra~k~~D~lLmK~vRniSqHeg  496 (791)
T KOG1222|consen  423 YTDCIKLLMKDVLSGTGSEVDLALIALCINLCLNKRNAQLVCEGQGLDLLMERAIKSRDLLLMKVVRNISQHEG  496 (791)
T ss_pred             HHHHHHHHHHHHHhcCCceecHHHHHHHHHHHhccccceEEecCcchHHHHHHHhcccchHHHHHHHHhhhccc
Confidence            888899887765 5556778888888888888442111111                 2889999999999874

>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]

Probab=94.47  E-value=0.21  Score=53.03  Aligned_cols=115  Identities=19%  Similarity=0.266  Sum_probs=97.0

Q ss_pred             HHHHHHHhhhhcc-CcccHHHhhh-ccChHHHHhhhcCCcHHHHHHHHHHHHhhc--CCchhhHHhhhcCChhHHHHhh-
Q 030369           39 KEKIVANLANFAY-DPYNYTFLRQ-LNVLELFLDCITEPNEKLVEFGVGGICNAS--VDPANAAIITKSGGIPLIIECL-  113 (178)
Q Consensus        39 keqvlanLaNfAy-DP~N~~~Lrq-L~vidlfld~L~~~n~~l~EfAiggLcNL~--~D~~nk~~I~~~gGi~~li~lL-  113 (178)
                      |.=+.-.|-|+.| |--|+.+|-- =|.|+.+|..|.++.+.|+.--++-|-||+  +|.--|+.+.+-|.+.-|..|- 
T Consensus       368 RrYa~MALTNLTFGDv~NKa~LCs~rgfMeavVAQL~s~peeL~QV~AsvLRNLSWRAD~nmKkvLrE~GsVtaLa~~al  447 (2195)
T KOG2122|consen  368 RRYAGMALTNLTFGDVANKATLCSQRGFMEAVVAQLISAPEELLQVYASVLRNLSWRADSNMKKVLRETGSVTALAACAL  447 (2195)
T ss_pred             HHHHHHHhhccccccccchhhhhhhhhHHHHHHHHHhcChHHHHHHHHHHHHhccccccccHHHHHHhhhhHHHHHHHHH
Confidence            6667778889995 6788888876 499999999999999899999999999998  9999999999999999999994 


Q ss_pred             cCCchhHHHHHHHHHHHhcCC--cccccccc----hHHHHHHHHhh
Q 030369          114 SSPVRNTVNHALGALYYLCSM--STKEEILK----PEVVDVIRRYA  153 (178)
Q Consensus       114 sS~~~evv~~AlttL~~L~~~--~sr~~I~~----p~ll~ll~~~~  153 (178)
                      .-.++.+++.-|.+||||..-  +++.+|..    -.+|--|..|.
T Consensus       448 ~~~kEsTLKavLSALWNLSAHcteNKA~iCaVDGALaFLVg~LSY~  493 (2195)
T KOG2122|consen  448 RNKKESTLKAVLSALWNLSAHCTENKAEICAVDGALAFLVGTLSYE  493 (2195)
T ss_pred             HhcccchHHHHHHHHhhhhhcccccchhhhcccchHHHHHhhcccc
Confidence            777789999999999999944  68999983    44444455555

>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments

Probab=94.38  E-value=1.5  Score=40.89  Aligned_cols=147  Identities=12%  Similarity=0.181  Sum_probs=97.4

Q ss_pred             HHHHHHHHHHhhcCChHHHHHHHHHHhhhhc-cCcccHHHhhhc-----cChHHHHhhhcCC------------------
Q 030369           20 LQYLQELVSQFQNSTDEERKEKIVANLANFA-YDPYNYTFLRQL-----NVLELFLDCITEP------------------   75 (178)
Q Consensus        20 ~~ylq~LV~efq~t~~~e~keqvlanLaNfA-yDP~N~~~LrqL-----~vidlfld~L~~~------------------   75 (178)
                      -+|.+.+|.=.+.++..+..+-|+.-++=+- .||.=+..+.+.     +....|+..|..+                  
T Consensus        52 ~~y~~~~l~ll~~~~~~d~vqyvL~Li~dll~~~~~~~~~f~~~~~~~~~~~~~fl~lL~~~d~~i~~~a~~iLt~l~~~  131 (429)
T cd00256          52 GQYVKTFVNLLSQIDKDDTVRYVLTLIDDMLQEDDTRVKLFHDDALLKKKTWEPFFNLLNRQDQFIVHMSFSILAKLACF  131 (429)
T ss_pred             HHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHhchHHHHHHHHHhhccccchHHHHHHHcCCchhHHHHHHHHHHHHHhc
Confidence            6788888887788888888777777666555 445544444442     4455555555422                  


Q ss_pred             -------------------------cHHHHHHHHHHHHhhcCCchhhHHhhhcCChhHHHHhhcCC--chhHHHHHHHHH
Q 030369           76 -------------------------NEKLVEFGVGGICNASVDPANAAIITKSGGIPLIIECLSSP--VRNTVNHALGAL  128 (178)
Q Consensus        76 -------------------------n~~l~EfAiggLcNL~~D~~nk~~I~~~gGi~~li~lLsS~--~~evv~~AlttL  128 (178)
                                               +...+.+|+.||.+|.--+..+..+.+.+|+++|+.+|+..  ..+..=+++-++
T Consensus       132 ~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~~~~R~~f~~~~~v~~L~~~L~~~~~~~Ql~Y~~ll~l  211 (429)
T cd00256         132 GLAKMEGSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLRVDEYRFAFVLADGVPTLVKLLSNATLGFQLQYQSIFCI  211 (429)
T ss_pred             CccccchhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhCCchHHHHHHHccCHHHHHHHHhhccccHHHHHHHHHHH
Confidence                                     23446778889999999999999999999999999999552  357777888888


Q ss_pred             HHhcCC-cccccc----cchHHHHHHHHhhhhcccchhHHHhHHHHHH
Q 030369          129 YYLCSM-STKEEI----LKPEVVDVIRRYAAAESVNVSFSNLAKAFLD  171 (178)
Q Consensus       129 ~~L~~~-~sr~~I----~~p~ll~ll~~~~~~~~~~~~~~nla~~fL~  171 (178)
                      |-|.=. ......    ..|.++++++.-..     .++.-+|-+-|-
T Consensus       212 WlLSF~~~~~~~~~~~~~i~~l~~i~k~s~K-----EKvvRv~l~~l~  254 (429)
T cd00256         212 WLLTFNPHAAEVLKRLSLIQDLSDILKESTK-----EKVIRIVLAIFR  254 (429)
T ss_pred             HHHhccHHHHHhhccccHHHHHHHHHHhhhh-----HHHHHHHHHHHH
Confidence            887632 211111    14777777765544     355555554443

The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.

>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B

Probab=93.96  E-value=0.15  Score=32.91  Aligned_cols=54  Identities=7%  Similarity=0.010  Sum_probs=43.8

Q ss_pred             HHHHHHHHHhhhhccCcccHHHhhhccChHHHHhhhcCCcHHHHHHHHHHHHhh
Q 030369           37 ERKEKIVANLANFAYDPYNYTFLRQLNVLELFLDCITEPNEKLVEFGVGGICNA   90 (178)
Q Consensus        37 e~keqvlanLaNfAyDP~N~~~LrqL~vidlfld~L~~~n~~l~EfAiggLcNL   90 (178)
                      ..|+.++.+|++++--......-..-++++.++.+|..+++.+.+-|..+|-|+
T Consensus         2 ~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l   55 (55)
T PF13513_consen    2 RVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGNL   55 (55)
T ss_dssp             HHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred             HHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence            467888999999885554444445568999999999999889999999999875

...

>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]

Probab=93.79  E-value=0.28  Score=39.89  Aligned_cols=140  Identities=12%  Similarity=0.174  Sum_probs=76.9

Q ss_pred             HHHHHh--hcC-ChHHHHHHHHHHhhhhc-cC--cccH----HHhhhccChHHHHhhhcCCcHHHHHHHHHHHHhhcCC-
Q 030369           25 ELVSQF--QNS-TDEERKEKIVANLANFA-YD--PYNY----TFLRQLNVLELFLDCITEPNEKLVEFGVGGICNASVD-   93 (178)
Q Consensus        25 ~LV~ef--q~t-~~~e~keqvlanLaNfA-yD--P~N~----~~LrqL~vidlfld~L~~~n~~l~EfAiggLcNL~~D-   93 (178)
                      .+++.|  ..+ .+=+.|.+.+-.|-.+. ++  +.+.    ..||  ++++.+..++++.+-.+...|..++..++.- 
T Consensus         7 ~~~~~l~~~~~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~--~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l   84 (228)
T PF12348_consen    7 EILAALEKKESESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLR--QLLDAIIKQLSDLRSKVSKTACQLLSDLARQL   84 (228)
T ss_dssp             GS-TTHHHHHT-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH-----HHHHH-S-HH---HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhccCCccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHH--HhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence            445555  333 45567777777777765 33  2222    3344  7889999999988889999998888888643 


Q ss_pred             -chhhHHhhhcCChhHHHHhhcCCchhHHHHHHHHHHHhcCCcccccccchHH-HHHHHHhhhhcccchhHHHhHHHHHH
Q 030369           94 -PANAAIITKSGGIPLIIECLSSPVRNTVNHALGALYYLCSMSTKEEILKPEV-VDVIRRYAAAESVNVSFSNLAKAFLD  171 (178)
Q Consensus        94 -~~nk~~I~~~gGi~~li~lLsS~~~evv~~AlttL~~L~~~~sr~~I~~p~l-l~ll~~~~~~~~~~~~~~nla~~fL~  171 (178)
                       .....++-  .-+|.|++++++++..+...|..+|..++..-+    ..|.+ +..+.....+.  |++++.-|.-+|.
T Consensus        85 ~~~~~~~~~--~~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~----~~~~~~~~~l~~~~~~K--n~~vR~~~~~~l~  156 (228)
T PF12348_consen   85 GSHFEPYAD--ILLPPLLKKLGDSKKFIREAANNALDAIIESCS----YSPKILLEILSQGLKSK--NPQVREECAEWLA  156 (228)
T ss_dssp             GGGGHHHHH--HHHHHHHHGGG---HHHHHHHHHHHHHHHTTS-----H--HHHHHHHHHHTT-S---HHHHHHHHHHHH
T ss_pred             hHhHHHHHH--HHHHHHHHHHccccHHHHHHHHHHHHHHHHHCC----cHHHHHHHHHHHHHhCC--CHHHHHHHHHHHH
Confidence             22333322  236889999988888888888888888875422    12333 45554444433  5677777766666


Q ss_pred             hhc
Q 030369          172 KHV  174 (178)
Q Consensus       172 ~~~  174 (178)
                      ..+
T Consensus       157 ~~l  159 (228)
T PF12348_consen  157 IIL  159 (228)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            544

The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.

>PF11841 DUF3361: Domain of unknown function (DUF3361)

Probab=93.54  E-value=0.38  Score=39.42  Aligned_cols=82  Identities=18%  Similarity=0.232  Sum_probs=65.2

Q ss_pred             hhhHHhhhcCChhHHHHhhcCCc------hhHHHHHHHHHHHhcCCc-ccccccchHHHHHHHHhhhhcccchhHHHhHH
Q 030369           95 ANAAIITKSGGIPLIIECLSSPV------RNTVNHALGALYYLCSMS-TKEEILKPEVVDVIRRYAAAESVNVSFSNLAK  167 (178)
Q Consensus        95 ~nk~~I~~~gGi~~li~lLsS~~------~evv~~AlttL~~L~~~~-sr~~I~~p~ll~ll~~~~~~~~~~~~~~nla~  167 (178)
                      +++.+++..||++.|++.+.++.      .++..++++++..|++-. ---++..+++++.+-.|=..+.....+--.|-
T Consensus         2 TFA~EFI~~~Gl~~L~~~iE~g~~~~~~~~~~La~~L~af~eLMeHg~vsWd~l~~~FI~Kia~~Vn~~~~d~~i~q~sL   81 (160)
T PF11841_consen    2 TFAQEFISRDGLTLLIKMIEEGTEIQPCKGEILAYALTAFVELMEHGIVSWDTLSDSFIKKIASYVNSSAMDASILQRSL   81 (160)
T ss_pred             chHHHHHhccCHHHHHHHHHcCCccCcchHHHHHHHHHHHHHHHhcCcCchhhccHHHHHHHHHHHccccccchHHHHHH
Confidence            56778888999999999995543      488899999999999653 24577789999999888775554678888999


Q ss_pred             HHHHhhccC
Q 030369          168 AFLDKHVTE  176 (178)
Q Consensus       168 ~fL~~~~~~  176 (178)
                      +.||.-+..
T Consensus        82 aILEs~Vl~   90 (160)
T PF11841_consen   82 AILESIVLN   90 (160)
T ss_pred             HHHHHHHhC
Confidence            999987653

>PF07814 WAPL: Wings apart-like protein regulation of heterochromatin; InterPro: IPR022771 This entry contains sequences expressed in eukaryotic organisms (metazoa, fungi, plants) bearing high similarity to the WAPL conserved region of D

Probab=93.22  E-value=0.44  Score=42.85  Aligned_cols=72  Identities=17%  Similarity=0.270  Sum_probs=57.3

Q ss_pred             cChHHHHhhhcCC-cHHHHHHHHHHHHhhcCCchhhHHhhhcCChhHHHHhh-cCCchhHHHHHHHHHHHhcCC
Q 030369           63 NVLELFLDCITEP-NEKLVEFGVGGICNASVDPANAAIITKSGGIPLIIECL-SSPVRNTVNHALGALYYLCSM  134 (178)
Q Consensus        63 ~vidlfld~L~~~-n~~l~EfAiggLcNL~~D~~nk~~I~~~gGi~~li~lL-sS~~~evv~~AlttL~~L~~~  134 (178)
                      +-++-++|-|.+. ...+..-++.-||.-|.||.++.++.++|..+.+.+++ ..++.++.-.+..++||++..
T Consensus        21 Dev~ylld~l~~~~~~s~Rr~sll~La~K~~~~~Fr~~~ra~g~~~~l~~~l~~~~~d~~~~l~~a~i~~~l~~   94 (361)
T PF07814_consen   21 DEVEYLLDGLESSSSSSVRRSSLLELASKCADPQFRRQFRAHGLVKRLFKALSDAPDDDILALATAAILYVLSR   94 (361)
T ss_pred             HHHHHHHhhcccCCCccHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHHHHHhccccchHHHHHHHHHHHHHHcc
Confidence            4466777778754 45778889999999999999999999999999999999 444343666677788887754

melanogaster wings apart-like protein. This protein is involved in the regulation of heterochromatin structure []. hWAPL (Q7Z5K2 from SWISSPROT), the human homologue, is found to play a role in the development of cervical carcinogenesis, and is thought to have similar functions to Drosophila wapl protein []. Malfunction of the hWAPL pathway is thought to activate an apoptotic pathway that consequently leads to cell death []. This entry includes proteins from metazoa, fungi and plants.

>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=92.74  E-value=0.17  Score=39.51  Aligned_cols=80  Identities=19%  Similarity=0.314  Sum_probs=54.7

Q ss_pred             HHHhhhhccCcccHHHhhhccChHHHHhhhcCC-cHHHHHHH---HHHHHhhcCCchhhHHhhhcCChhHHHHhhcCCch
Q 030369           43 VANLANFAYDPYNYTFLRQLNVLELFLDCITEP-NEKLVEFG---VGGICNASVDPANAAIITKSGGIPLIIECLSSPVR  118 (178)
Q Consensus        43 lanLaNfAyDP~N~~~LrqL~vidlfld~L~~~-n~~l~EfA---iggLcNL~~D~~nk~~I~~~gGi~~li~lLsS~~~  118 (178)
                      ..|...|  .-.||..||.      ++++|+.+ |+..+--|   +|-++-..  |..+..|-+.||=+.|++|++++|+
T Consensus        31 ~ENa~kf--~~~~~~llk~------L~~lL~~s~d~~~laVac~Dig~~vr~~--p~gr~ii~~lg~K~~vM~Lm~h~d~  100 (119)
T PF11698_consen   31 RENADKF--EENNFELLKK------LIKLLDKSDDPTTLAVACHDIGEFVRHY--PNGRNIIEKLGAKERVMELMNHEDP  100 (119)
T ss_dssp             HHHSGGG--SSGGGHHHHH------HHHHH-SHHHHHHHHHHHHHHHHHHHH---GGGHHHHHHHSHHHHHHHHTS-SSH
T ss_pred             HHHHHHH--HHcccHHHHH------HHHHHccCCCcceeehhhcchHHHHHHC--hhHHHHHHhcChHHHHHHHhcCCCH
Confidence            4566666  5667777766      46677443 44444333   34444443  7778888777788899999999999


Q ss_pred             hHHHHHHHHHHHhc
Q 030369          119 NTVNHALGALYYLC  132 (178)
Q Consensus       119 evv~~AlttL~~L~  132 (178)
                      +|...|+.|+.-++
T Consensus       101 eVr~eAL~avQklm  114 (119)
T PF11698_consen  101 EVRYEALLAVQKLM  114 (119)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH
Confidence            99999999987654

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.

>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1

Probab=92.55  E-value=0.71  Score=37.09  Aligned_cols=84  Identities=13%  Similarity=0.188  Sum_probs=62.1

Q ss_pred             hHHHHhhhcCCcHHHHHHHHHHHHhhcCCchhhHHhhhcCCh-hHHHHhhcCCchhHHHHHHHHHHHhcCCccccccc--
Q 030369           65 LELFLDCITEPNEKLVEFGVGGICNASVDPANAAIITKSGGI-PLIIECLSSPVRNTVNHALGALYYLCSMSTKEEIL--  141 (178)
Q Consensus        65 idlfld~L~~~n~~l~EfAiggLcNL~~D~~nk~~I~~~gGi-~~li~lLsS~~~evv~~AlttL~~L~~~~sr~~I~--  141 (178)
                      ++.+..+|..+++.+.+-|+-+|.+|...    .+|--.|.+ ..+..||..++++|...|...+..+........|.  
T Consensus        27 ~~~l~~~L~D~~~~VR~~al~~Ls~Li~~----d~ik~k~~l~~~~l~~l~D~~~~Ir~~A~~~~~e~~~~~~~~~i~~~  102 (178)
T PF12717_consen   27 LPNLYKCLRDEDPLVRKTALLVLSHLILE----DMIKVKGQLFSRILKLLVDENPEIRSLARSFFSELLKKRNPNIIYNN  102 (178)
T ss_pred             HHHHHHHHCCCCHHHHHHHHHHHHHHHHc----CceeehhhhhHHHHHHHcCCCHHHHHHHHHHHHHHHHhccchHHHHH
Confidence            66788899999999999999999999643    444334555 88899999999999999999988877553223332  


Q ss_pred             chHHHHHHHHh
Q 030369          142 KPEVVDVIRRY  152 (178)
Q Consensus       142 ~p~ll~ll~~~  152 (178)
                      .|.++--+..+
T Consensus       103 ~~e~i~~l~~~  113 (178)
T PF12717_consen  103 FPELISSLNNC  113 (178)
T ss_pred             HHHHHHHHhCc
Confidence            35555555544

>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle

Probab=92.30  E-value=0.5  Score=37.66  Aligned_cols=85  Identities=19%  Similarity=0.135  Sum_probs=63.2

Q ss_pred             HHHhhhhccCcccHHHhhhccChHHHHhhhc--CCcHHHHHHHHHHHHhhcCCchhhHHhhhcCChhHHHHhhc-CCchh
Q 030369           43 VANLANFAYDPYNYTFLRQLNVLELFLDCIT--EPNEKLVEFGVGGICNASVDPANAAIITKSGGIPLIIECLS-SPVRN  119 (178)
Q Consensus        43 lanLaNfAyDP~N~~~LrqL~vidlfld~L~--~~n~~l~EfAiggLcNL~~D~~nk~~I~~~gGi~~li~lLs-S~~~e  119 (178)
                      ++.|.==..|..|.-++.+ |+++.+++..+  .++..+..-+.=.|.--|.|...+.+|.++ |+++|.+.++ ++++.
T Consensus        67 l~~lfp~~~dv~~~l~~~e-g~~~~l~~~~~~~~~~~~~~~~~lell~aAc~d~~~r~~I~~~-~~~~L~~~~~~~~~~~  144 (157)
T PF11701_consen   67 LTALFPGPPDVGSELFLSE-GFLESLLPLASRKSKDRKVQKAALELLSAACIDKSCRTFISKN-YVSWLKELYKNSKDDS  144 (157)
T ss_dssp             HHHHCTTTHHHHHHHCCTT-THHHHHHHHHH-CTS-HHHHHHHHHHHHHHTTSHHHHHCCHHH-CHHHHHHHTTTCC-HH
T ss_pred             HHHHhCCCHHHHHHHHhhh-hHHHHHHHHHhcccCCHHHHHHHHHHHHHHHccHHHHHHHHHH-HHHHHHHHHccccchH
Confidence            3333333466666666666 89999999999  678888888888888889999999999986 8999999994 55444


Q ss_pred             -HHHHHHHHHH
Q 030369          120 -TVNHALGALY  129 (178)
Q Consensus       120 -vv~~AlttL~  129 (178)
                       +...|...|.
T Consensus       145 ~ir~~A~v~L~  155 (157)
T PF11701_consen  145 EIRVLAAVGLC  155 (157)
T ss_dssp             -CHHHHHHHHH
T ss_pred             HHHHHHHHHHh
Confidence             5666666554

Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.

>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain

Probab=91.29  E-value=8.1  Score=33.40  Aligned_cols=150  Identities=15%  Similarity=0.160  Sum_probs=104.5

Q ss_pred             HHHHHHHHHHhhcCChHHHHHHHHHHhhhhc-cCcccHHHhhhccChHHHHhhhcCCcHHHHHHHHHHHHhhcCCchhhH
Q 030369           20 LQYLQELVSQFQNSTDEERKEKIVANLANFA-YDPYNYTFLRQLNVLELFLDCITEPNEKLVEFGVGGICNASVDPANAA   98 (178)
Q Consensus        20 ~~ylq~LV~efq~t~~~e~keqvlanLaNfA-yDP~N~~~LrqL~vidlfld~L~~~n~~l~EfAiggLcNL~~D~~nk~   98 (178)
                      .+.++.||-.-=.+++.+.|+..+-.|.=|+ .|+..-     ..-+++|+.+++.+++.+..-|+.+|+-+..-..-..
T Consensus        25 ~~ll~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~~~a-----~~~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~~   99 (298)
T PF12719_consen   25 ESLLDSLILPAVQSSDPAVRELALKCLGLCCLLDKELA-----KEHLPLFLQALQKDDEEVKITALKALFDLLLTHGIDI   99 (298)
T ss_pred             HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhChHHH-----HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCchh
Confidence            3788888877777888899999999999999 887332     2447889999988899999999999999875433221


Q ss_pred             HhhhcC-----C----hhHHHHhhcCCchhHHHHHHHHHHHhcCCcccccccc-hHHHHHHH-H-hhhhcccchhHHHhH
Q 030369           99 IITKSG-----G----IPLIIECLSSPVRNTVNHALGALYYLCSMSTKEEILK-PEVVDVIR-R-YAAAESVNVSFSNLA  166 (178)
Q Consensus        99 ~I~~~g-----G----i~~li~lLsS~~~evv~~AlttL~~L~~~~sr~~I~~-p~ll~ll~-~-~~~~~~~~~~~~nla  166 (178)
                      .-...+     +    ++.+.+.|.+.++++..-|++.+.-|+-.   ..+.. |.++.-|- . |......|.+++-.=
T Consensus       100 ~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~---~~i~~~~~vL~~Lll~yF~p~t~~~~~LrQ~L  176 (298)
T PF12719_consen  100 FDSESDNDESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLLS---GRISDPPKVLSRLLLLYFNPSTEDNQRLRQCL  176 (298)
T ss_pred             ccchhccCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhc---CCCCcHHHHHHHHHHHHcCcccCCcHHHHHHH
Confidence            111111     1    24556667777889999999998876633   22223 55555443 3 333333457888888


Q ss_pred             HHHHHhhccCC
Q 030369          167 KAFLDKHVTEN  177 (178)
Q Consensus       167 ~~fL~~~~~~~  177 (178)
                      ..|+.-||..+
T Consensus       177 ~~Ffp~y~~s~  187 (298)
T PF12719_consen  177 SVFFPVYASSS  187 (298)
T ss_pred             HHHHHHHHcCC
Confidence            88888888653

>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=91.24  E-value=2.2  Score=38.87  Aligned_cols=119  Identities=17%  Similarity=0.184  Sum_probs=93.7

Q ss_pred             HHHHHHHhhcCChHHHHHHHHHHhhhhc-cCcccHHHhhhccChHHHHhhhcCCcH-HHHHHHHHHHHhhcCC-chhhHH
Q 030369           23 LQELVSQFQNSTDEERKEKIVANLANFA-YDPYNYTFLRQLNVLELFLDCITEPNE-KLVEFGVGGICNASVD-PANAAI   99 (178)
Q Consensus        23 lq~LV~efq~t~~~e~keqvlanLaNfA-yDP~N~~~LrqL~vidlfld~L~~~n~-~l~EfAiggLcNL~~D-~~nk~~   99 (178)
                      +.-|+. |=++++.+.|+.++-=++-.+ -+|.=...+-+.+.+..++..|+.+++ ...--|.++||++.-. +.-...
T Consensus       126 l~~ll~-~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll~~ls~~~~~~~r~kaL~AissLIRn~~~g~~~  204 (342)
T KOG2160|consen  126 LVPLLG-YLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLLKILSSDDPNTVRTKALFAISSLIRNNKPGQDE  204 (342)
T ss_pred             HHHHHH-HhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHHHHHccCCCchHHHHHHHHHHHHHhcCcHHHHH
Confidence            344566 777889999999888888888 559999999999999999999997644 4558899999999854 777888


Q ss_pred             hhhcCChhHHHHhhcCC--chhHHHHHHHHHHHhcCC-cccccccc
Q 030369          100 ITKSGGIPLIIECLSSP--VRNTVNHALGALYYLCSM-STKEEILK  142 (178)
Q Consensus       100 I~~~gGi~~li~lLsS~--~~evv~~AlttL~~L~~~-~sr~~I~~  142 (178)
                      ++.-+|..-|+.+|.++  +.-.+.-++..+-+|+.. -+..+|.+
T Consensus       205 fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s~~d~~~  250 (342)
T KOG2160|consen  205 FLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDKSDEDIAS  250 (342)
T ss_pred             HHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhhhhhHHH
Confidence            88888999999999885  455566677777777755 35555554

>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B

Probab=91.05  E-value=0.63  Score=29.96  Aligned_cols=53  Identities=11%  Similarity=-0.060  Sum_probs=37.7

Q ss_pred             HHHHHHHHHHHhhcCCchhhHHhhhcCChhHHHHhhcCCchhHHHHHHHHHHH
Q 030369           78 KLVEFGVGGICNASVDPANAAIITKSGGIPLIIECLSSPVRNTVNHALGALYY  130 (178)
Q Consensus        78 ~l~EfAiggLcNL~~D~~nk~~I~~~gGi~~li~lLsS~~~evv~~AlttL~~  130 (178)
                      .+.+-|+-+|.+++--......-.....++.++.+|.+++++|-.+|..+|-+
T Consensus         2 ~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~   54 (55)
T PF13513_consen    2 RVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGN   54 (55)
T ss_dssp             HHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhc
Confidence            46677888888876443333333444568999999988888888888877754

...

>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10

Probab=91.04  E-value=0.5  Score=35.93  Aligned_cols=51  Identities=27%  Similarity=0.376  Sum_probs=43.7

Q ss_pred             HHHHHhhcCC-chhhHHhhhcCChhHHHHhh--cCCchhHHHHHHHHHHHhcCC
Q 030369           84 VGGICNASVD-PANAAIITKSGGIPLIIECL--SSPVRNTVNHALGALYYLCSM  134 (178)
Q Consensus        84 iggLcNL~~D-~~nk~~I~~~gGi~~li~lL--sS~~~evv~~AlttL~~L~~~  134 (178)
                      +--|.|||-+ +.++.+|.+.||||+|.+|=  ...+|=+...|+-++=+|+..
T Consensus         7 vrlianl~~~~~~~Qd~vr~~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~   60 (102)
T PF09759_consen    7 VRLIANLCYKNKEVQDLVRELGGIPLILSCCNIDDHNPFIREWAIFAIRNLCEG   60 (102)
T ss_pred             HHHHHHHHhCCHHHHHHHHHcCChHHHHHhcCCCcccHHHHHHHHHHHHHHHhC
Confidence            4567888855 99999999999999998884  666799999999999999954

Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].

>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms

Probab=90.77  E-value=0.57  Score=45.09  Aligned_cols=102  Identities=15%  Similarity=0.206  Sum_probs=64.5

Q ss_pred             CCChHHHHHHHHHHhhcCChHHHHHHHHHHhhhhc-cCcccHHHhhhccChHHHHhhhcCCcHHHHHHHHHHHHhhcCC-
Q 030369           16 GTPRLQYLQELVSQFQNSTDEERKEKIVANLANFA-YDPYNYTFLRQLNVLELFLDCITEPNEKLVEFGVGGICNASVD-   93 (178)
Q Consensus        16 g~~R~~ylq~LV~efq~t~~~e~keqvlanLaNfA-yDP~N~~~LrqL~vidlfld~L~~~n~~l~EfAiggLcNL~~D-   93 (178)
                      +-..-+|..-|..   ...+..+|.=+--+.+-|. +=|.    |. =.+|+..+|+..+++..+.-.||-+|-.+|.| 
T Consensus        19 ~~~~~~y~~il~~---~kg~~k~K~Laaq~I~kffk~FP~----l~-~~Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~   90 (556)
T PF05918_consen   19 SQHEEDYKEILDG---VKGSPKEKRLAAQFIPKFFKHFPD----LQ-EEAINAQLDLCEDEDVQIRKQAIKGLPQLCKDN   90 (556)
T ss_dssp             GGGHHHHHHHHHG---GGS-HHHHHHHHHHHHHHHCC-GG----GH-HHHHHHHHHHHT-SSHHHHHHHHHHGGGG--T-
T ss_pred             ccCHHHHHHHHHH---ccCCHHHHHHHHHHHHHHHhhChh----hH-HHHHHHHHHHHhcccHHHHHHHHHhHHHHHHhH
Confidence            4445566655543   2235556665556677776 3353    22 27899999999999999999999999999988 


Q ss_pred             chhhHHhhhcCChhHHHHhhcCCch---hHHHHHHHHHHH
Q 030369           94 PANAAIITKSGGIPLIIECLSSPVR---NTVNHALGALYY  130 (178)
Q Consensus        94 ~~nk~~I~~~gGi~~li~lLsS~~~---evv~~AlttL~~  130 (178)
                      |..-.-|     +..|++||.+.++   ++|.+|+..|+-
T Consensus        91 ~~~v~kv-----aDvL~QlL~tdd~~E~~~v~~sL~~ll~  125 (556)
T PF05918_consen   91 PEHVSKV-----ADVLVQLLQTDDPVELDAVKNSLMSLLK  125 (556)
T ss_dssp             -T-HHHH-----HHHHHHHTT---HHHHHHHHHHHHHHHH
T ss_pred             HHHHhHH-----HHHHHHHHhcccHHHHHHHHHHHHHHHh
Confidence            5555555     5689999977653   566777755554

Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.

>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region

Probab=90.41  E-value=0.62  Score=34.69  Aligned_cols=67  Identities=16%  Similarity=0.207  Sum_probs=49.3

Q ss_pred             cChHHHHhhhcCCcHHHHHHHHHHHHhhcCCchhhHHhhhc--CChhHHHHhhcCCchhHHHHHHHHHHHhc
Q 030369           63 NVLELFLDCITEPNEKLVEFGVGGICNASVDPANAAIITKS--GGIPLIIECLSSPVRNTVNHALGALYYLC  132 (178)
Q Consensus        63 ~vidlfld~L~~~n~~l~EfAiggLcNL~~D~~nk~~I~~~--gGi~~li~lLsS~~~evv~~AlttL~~L~  132 (178)
                      .++++.+.|++.++.+++.+|.=+|-|++  ...+..++.+  .=.+-+.++.+.++++| .++.+.|-.|+
T Consensus        27 ~Il~pVL~~~~D~d~rVRy~AcEaL~ni~--k~~~~~~l~~f~~IF~~L~kl~~D~d~~V-r~~a~~Ld~ll   95 (97)
T PF12755_consen   27 EILPPVLKCFDDQDSRVRYYACEALYNIS--KVARGEILPYFNEIFDALCKLSADPDENV-RSAAELLDRLL   95 (97)
T ss_pred             HHHHHHHHHcCCCcHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHcCCchhH-HHHHHHHHHHh
Confidence            57999999999999999999999999997  3334444432  11245567778887776 55657776665

>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region

Probab=89.91  E-value=0.6  Score=34.77  Aligned_cols=61  Identities=21%  Similarity=0.388  Sum_probs=48.5

Q ss_pred             hhHHHHhhcCCchhHHHHHHHHHHHhcCCccccccc--chHHHHHHHHhhhhcccchhHHHhHHHH
Q 030369          106 IPLIIECLSSPVRNTVNHALGALYYLCSMSTKEEIL--KPEVVDVIRRYAAAESVNVSFSNLAKAF  169 (178)
Q Consensus       106 i~~li~lLsS~~~evv~~AlttL~~L~~~~sr~~I~--~p~ll~ll~~~~~~~~~~~~~~nla~~f  169 (178)
                      +|++..|+++++..|=-.|.++||+++.. .+.++.  .+.+.+.|-+...  +.++++++-|+.+
T Consensus        29 l~pVL~~~~D~d~rVRy~AcEaL~ni~k~-~~~~~l~~f~~IF~~L~kl~~--D~d~~Vr~~a~~L   91 (97)
T PF12755_consen   29 LPPVLKCFDDQDSRVRYYACEALYNISKV-ARGEILPYFNEIFDALCKLSA--DPDENVRSAAELL   91 (97)
T ss_pred             HHHHHHHcCCCcHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHc--CCchhHHHHHHHH
Confidence            79999999999999999999999999733 345554  5888888866555  6678898888543

>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []

Probab=89.82  E-value=3  Score=32.81  Aligned_cols=104  Identities=20%  Similarity=0.263  Sum_probs=68.0

Q ss_pred             HHHHHhhcCChHHHHHHHHHHhhhhc-cCcccH--HHhhhccChHHHHhhhcC---------CcHHHHHHHHHHHHhhcC
Q 030369           25 ELVSQFQNSTDEERKEKIVANLANFA-YDPYNY--TFLRQLNVLELFLDCITE---------PNEKLVEFGVGGICNASV   92 (178)
Q Consensus        25 ~LV~efq~t~~~e~keqvlanLaNfA-yDP~N~--~~LrqL~vidlfld~L~~---------~n~~l~EfAiggLcNL~~   92 (178)
                      .+|+.+++.+...   +++..|.=.= ..|..|  .++ ..|-++.+++.|..         .+..+....+.||=.++.
T Consensus        70 ~~i~~L~~~~~~~---~~L~~L~v~Lrt~~~~Wv~~Fl-~~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Clkal~n  145 (187)
T PF06371_consen   70 WYIKKLKSRPSTS---KILKSLRVSLRTNPISWVQEFL-ELGGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCLKALMN  145 (187)
T ss_dssp             HHHHHHTTT--HH---HHHHHHHHHHHHS-HHHHHHH--HHHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHHHHHTS
T ss_pred             HHHHHHHccCccH---HHHHHHHHHhccCCchHHHHhc-cCCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHHHHHc
Confidence            4444444443322   4455554333 456666  444 56888888888762         245677778889888887


Q ss_pred             CchhhHHhhh-cCChhHHHHhhcCCchhHHHHHHHHHHHhc
Q 030369           93 DPANAAIITK-SGGIPLIIECLSSPVRNTVNHALGALYYLC  132 (178)
Q Consensus        93 D~~nk~~I~~-~gGi~~li~lLsS~~~evv~~AlttL~~L~  132 (178)
                      ...-...++. .+++..|+.||.|++..+..-++..|-.+|
T Consensus       146 ~~~G~~~v~~~~~~v~~i~~~L~s~~~~~r~~~leiL~~lc  186 (187)
T PF06371_consen  146 TKYGLEAVLSHPDSVNLIALSLDSPNIKTRKLALEILAALC  186 (187)
T ss_dssp             SHHHHHHHHCSSSHHHHHHHT--TTSHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHcCcHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Confidence            7665666655 778899999999999999999999887765

Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.

>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=89.06  E-value=2.4  Score=41.19  Aligned_cols=112  Identities=14%  Similarity=0.235  Sum_probs=96.1

Q ss_pred             HHHHHH----HhhhhccCcccHHHhhhccChHHHHhhhcCCcHHHHHHHHHHHHhhcCCchhhHHhhhcCChhHHHHhhc
Q 030369           39 KEKIVA----NLANFAYDPYNYTFLRQLNVLELFLDCITEPNEKLVEFGVGGICNASVDPANAAIITKSGGIPLIIECLS  114 (178)
Q Consensus        39 keqvla----nLaNfAyDP~N~~~LrqL~vidlfld~L~~~n~~l~EfAiggLcNL~~D~~nk~~I~~~gGi~~li~lLs  114 (178)
                      |||.++    =|.|.|-|-.=-..+|.=+++-+++-+|+.+|-.|.-.-+.-|--||.=-.||....+.|-++.+.++.-
T Consensus       276 QeqLLrva~ylLlNlAed~~~ElKMrrkniV~mLVKaLdr~n~~Ll~lv~~FLkKLSIf~eNK~~M~~~~iveKL~klfp  355 (791)
T KOG1222|consen  276 QEQLLRVAVYLLLNLAEDISVELKMRRKNIVAMLVKALDRSNSSLLTLVIKFLKKLSIFDENKIVMEQNGIVEKLLKLFP  355 (791)
T ss_pred             HHHHHHHHHHHHHHHhhhhhHHHHHHHHhHHHHHHHHHcccchHHHHHHHHHHHHhhhhccchHHHHhccHHHHHHHhcC
Confidence            556554    3789999999999999999999999999999988888888999999988899999999999999999998


Q ss_pred             CCchhHHHHHHHHHHHhcCC-ccccccc----chHHHHHHH
Q 030369          115 SPVRNTVNHALGALYYLCSM-STKEEIL----KPEVVDVIR  150 (178)
Q Consensus       115 S~~~evv~~AlttL~~L~~~-~sr~~I~----~p~ll~ll~  150 (178)
                      +.++|.++-.+..+++|.=+ ..|....    -|-+..++.
T Consensus       356 ~~h~dL~~~tl~LlfNlSFD~glr~KMv~~GllP~l~~ll~  396 (791)
T KOG1222|consen  356 IQHPDLRKATLMLLFNLSFDSGLRPKMVNGGLLPHLASLLD  396 (791)
T ss_pred             CCCHHHHHHHHHHhhhccccccccHHHhhccchHHHHHHhC
Confidence            88899999999999999966 4565555    366666664

>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []

Probab=88.53  E-value=0.52  Score=27.57  Aligned_cols=28  Identities=11%  Similarity=0.317  Sum_probs=24.3

Q ss_pred             ChHHHHhhhcCCcHHHHHHHHHHHHhhc
Q 030369           64 VLELFLDCITEPNEKLVEFGVGGICNAS   91 (178)
Q Consensus        64 vidlfld~L~~~n~~l~EfAiggLcNL~   91 (178)
                      ++|.|+.+|+.+++.+.+.|+-||-+++
T Consensus         1 llp~l~~~l~D~~~~VR~~a~~~l~~i~   28 (31)
T PF02985_consen    1 LLPILLQLLNDPSPEVRQAAAECLGAIA   28 (31)
T ss_dssp             HHHHHHHHHT-SSHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence            4789999999999999999999998775

Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....

>COG5369 Uncharacterized conserved protein [Function unknown]

Probab=88.32  E-value=0.33  Score=47.14  Aligned_cols=122  Identities=22%  Similarity=0.231  Sum_probs=83.4

Q ss_pred             HHHhhhccChHHHHhhhcCCcHHHHHHHHHHHHhhcCCchh-hHHhhhcCChhHHHHhhcCCchhHHHHHHHHHHHhc--
Q 030369           56 YTFLRQLNVLELFLDCITEPNEKLVEFGVGGICNASVDPAN-AAIITKSGGIPLIIECLSSPVRNTVNHALGALYYLC--  132 (178)
Q Consensus        56 ~~~LrqL~vidlfld~L~~~n~~l~EfAiggLcNL~~D~~n-k~~I~~~gGi~~li~lLsS~~~evv~~AlttL~~L~--  132 (178)
                      +.-|...+|.+++++.|+.++-.+.--+++.+||..+...| ++.+++.|=|..|+++++|.|.....+++=.++.|+  
T Consensus       424 RTgL~d~~I~elLi~~Ls~Peimi~~~~t~~icn~vv~fsnL~~~fL~~~iIdvl~~~v~sKDdaLqans~wvlrHlmyn  503 (743)
T COG5369         424 RTGLLDYPIVELLIDALSNPEIMIEFPDTIDICNKVVPFSNLGAGFLEKSIIDVLVNLVMSKDDALQANSEWVLRHLMYN  503 (743)
T ss_pred             HhhccccchHHHHHHHhcCccceeeccchhhhhheeeeccchHHHHHHhhHHHHHHHHhhcchhhhhhcchhhhhhhhhc
Confidence            34556689999999999988766666688999999999666 556677878899999999888877777776665444  


Q ss_pred             -CCcccccccc-------------------hHHHHHHHHhhhhcccchhHH----------HhHHHHHHhhccCC
Q 030369          133 -SMSTKEEILK-------------------PEVVDVIRRYAAAESVNVSFS----------NLAKAFLDKHVTEN  177 (178)
Q Consensus       133 -~~~sr~~I~~-------------------p~ll~ll~~~~~~~~~~~~~~----------nla~~fL~~~~~~~  177 (178)
                       +..-+-+..+                   .-++++++.|-..+..|.+..          =+++.|++++-..|
T Consensus       504 cq~~ekf~~Lakig~~kvl~~~NDpc~~vq~q~lQilrNftc~~~knEkskdv~~K~~p~~ylfk~l~~k~e~~n  578 (743)
T COG5369         504 CQKNEKFKFLAKIGVEKVLSYTNDPCFKVQHQVLQILRNFTCDTSKNEKSKDVFIKATPRRYLFKRLIDKYEENN  578 (743)
T ss_pred             CcchhhhhhHHhcCHHHHHHHhcCcccccHHHHHHHHHhcccccccccccceeEEecChHHHHHHHHHHHHHhcC
Confidence             3321112210                   456788888877433232221          27778887775443

>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]

Probab=88.10  E-value=7.2  Score=31.62  Aligned_cols=105  Identities=10%  Similarity=0.041  Sum_probs=68.5

Q ss_pred             cChHHHHhhhcCCcHHHHHHHHHHHHhhcCCchhhHHhhhcCChhHHHHhhcCCchhHHHHHHHHHHHhcCCcc--cccc
Q 030369           63 NVLELFLDCITEPNEKLVEFGVGGICNASVDPANAAIITKSGGIPLIIECLSSPVRNTVNHALGALYYLCSMST--KEEI  140 (178)
Q Consensus        63 ~vidlfld~L~~~n~~l~EfAiggLcNL~~D~~nk~~I~~~gGi~~li~lLsS~~~evv~~AlttL~~L~~~~s--r~~I  140 (178)
                      .+++.++..+...+..+.+-|..+|..++-.-.....+.    ++.+....++.++.+-..++..+..++....  ...+
T Consensus        94 ~~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~~~~~~~----~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~~l  169 (228)
T PF12348_consen   94 ILLPPLLKKLGDSKKFIREAANNALDAIIESCSYSPKIL----LEILSQGLKSKNPQVREECAEWLAIILEKWGSDSSVL  169 (228)
T ss_dssp             HHHHHHHHGGG---HHHHHHHHHHHHHHHTTS-H--HHH----HHHHHHHTT-S-HHHHHHHHHHHHHHHTT-----GGG
T ss_pred             HHHHHHHHHHccccHHHHHHHHHHHHHHHHHCCcHHHHH----HHHHHHHHhCCCHHHHHHHHHHHHHHHHHccchHhhh
Confidence            467888999999999999999999998876544222221    3456666788889999999998888886632  3333


Q ss_pred             c----chHHHHHHHHhhhhcccchhHHHhHHHHHHhh
Q 030369          141 L----KPEVVDVIRRYAAAESVNVSFSNLAKAFLDKH  173 (178)
Q Consensus       141 ~----~p~ll~ll~~~~~~~~~~~~~~nla~~fL~~~  173 (178)
                      .    .+.+++.+..+-.  +.++.+++.|..-+..+
T Consensus       170 ~~~~~~~~l~~~l~~~l~--D~~~~VR~~Ar~~~~~l  204 (228)
T PF12348_consen  170 QKSAFLKQLVKALVKLLS--DADPEVREAARECLWAL  204 (228)
T ss_dssp             --HHHHHHHHHHHHHHHT--SS-HHHHHHHHHHHHHH
T ss_pred             cccchHHHHHHHHHHHCC--CCCHHHHHHHHHHHHHH
Confidence            3    2667888877766  55788888887766554

The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.

>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]

Probab=87.71  E-value=2  Score=41.06  Aligned_cols=82  Identities=22%  Similarity=0.281  Sum_probs=68.8

Q ss_pred             cCChHHHHHHHHHHhhhhccC-cccHHHhhhccChHHHHhhhcC----C---cHHHHHHHHHHHHhhcCC-chhhHHhhh
Q 030369           32 NSTDEERKEKIVANLANFAYD-PYNYTFLRQLNVLELFLDCITE----P---NEKLVEFGVGGICNASVD-PANAAIITK  102 (178)
Q Consensus        32 ~t~~~e~keqvlanLaNfAyD-P~N~~~LrqL~vidlfld~L~~----~---n~~l~EfAiggLcNL~~D-~~nk~~I~~  102 (178)
                      +|++.|.-+|+--.|+|-.|| -.|+..+-++|--...+|.|.+    +   ++....-+-|-|.|.+.| ..-+.+..+
T Consensus        97 sS~d~ev~~Q~~RaLgNiCydn~E~R~a~~~lgGaqivid~L~~~cs~d~~ane~~~~v~~g~l~Ny~l~~~~l~aq~~~  176 (604)
T KOG4500|consen   97 SSPDTEVHEQCFRALGNICYDNNENRAAFFNLGGAQIVIDVLKPYCSKDNPANEEYSAVAFGVLHNYILDSRELRAQVAD  176 (604)
T ss_pred             CCCcccHHHHHHHHHhhhhccCchhHHHHHhcCCceehHhhhccccccCCccHHHHHHHHHHHHHHhhCCcHHHHHHHHh
Confidence            446789999999999999999 7899999999997778888864    2   567777788999999999 667888999


Q ss_pred             cCChhHHHHhh
Q 030369          103 SGGIPLIIECL  113 (178)
Q Consensus       103 ~gGi~~li~lL  113 (178)
                      .|-++-+...+
T Consensus       177 ~gVl~tL~~~~  187 (604)
T KOG4500|consen  177 AGVLNTLAITY  187 (604)
T ss_pred             cccHHHHHHHh
Confidence            98888665555

>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter

Probab=86.98  E-value=2.1  Score=35.73  Aligned_cols=72  Identities=17%  Similarity=0.124  Sum_probs=50.2

Q ss_pred             cChHHHHhhhcCCcHHHHHHHHHHHHhhcCC-chhhHHhhhcCChhHHHHhhcCCchhHHHHHHHHHHHhcCC
Q 030369           63 NVLELFLDCITEPNEKLVEFGVGGICNASVD-PANAAIITKSGGIPLIIECLSSPVRNTVNHALGALYYLCSM  134 (178)
Q Consensus        63 ~vidlfld~L~~~n~~l~EfAiggLcNL~~D-~~nk~~I~~~gGi~~li~lLsS~~~evv~~AlttL~~L~~~  134 (178)
                      ..++.|.|-|.|-+.=-.-+|.-|+--|..- ...|..=.=-.=|.+|.+-|.+.+++|...++.+|-.|+..
T Consensus        38 ~~Lpif~dGL~Et~~Py~flA~~g~~dll~~~~~~kilPvlPqLI~plk~AL~tr~~~V~~~~L~~Lq~Lv~~  110 (183)
T PF10274_consen   38 HYLPIFFDGLRETEHPYRFLARQGIKDLLERGGGEKILPVLPQLIIPLKRALNTRDPEVFCATLKALQQLVTS  110 (183)
T ss_pred             hHHHHHHhhhhccCccHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHh
Confidence            3589999999987666666777777766433 22221111111255667889999999999999999999755

The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.

>PF14663 RasGEF_N_2: Rapamycin-insensitive companion of mTOR RasGEF_N domain

Probab=86.15  E-value=1.6  Score=33.26  Aligned_cols=102  Identities=16%  Similarity=0.168  Sum_probs=65.7

Q ss_pred             ChHHHHhhhcCCcHHHHHHHHHHHHhhcCCchhhHHhhhcCChhHHHHhhcCCchhHHHHHHHHHHHhcCCccccccc-c
Q 030369           64 VLELFLDCITEPNEKLVEFGVGGICNASVDPANAAIITKSGGIPLIIECLSSPVRNTVNHALGALYYLCSMSTKEEIL-K  142 (178)
Q Consensus        64 vidlfld~L~~~n~~l~EfAiggLcNL~~D~~nk~~I~~~gGi~~li~lLsS~~~evv~~AlttL~~L~~~~sr~~I~-~  142 (178)
                      +|++++..|..+++.++..|+--|+..|.|+..-+.++..   .|-...|...      ..+-.+.+|.++....-.. .
T Consensus         9 ~i~lLv~QL~D~~~~V~~~A~~iL~e~c~~~~~le~~v~~---~p~l~~L~~~------g~~Ll~~~lS~~~Gf~~L~~~   79 (115)
T PF14663_consen    9 GIELLVTQLYDPSPEVVAAALEILEEACEDKEYLEYLVSL---RPSLDHLGDI------GSPLLLRFLSTPSGFRYLNEI   79 (115)
T ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHHHhchhhHHHHHHc---CcHHHHHHHc------CHHHHHHHHcchHHHHHhcch
Confidence            4789999999999999999999999999999777776542   2222333221      1112223343432211111 1


Q ss_pred             hHHHHHHHHhhhhcccchhHHHhHHHHHHhhccC
Q 030369          143 PEVVDVIRRYAAAESVNVSFSNLAKAFLDKHVTE  176 (178)
Q Consensus       143 p~ll~ll~~~~~~~~~~~~~~nla~~fL~~~~~~  176 (178)
                      --|-+-|..|....  |.+-..+...+|.+..+.
T Consensus        80 ~~v~~El~~W~~~~--N~~YV~~vE~~l~~~~~~  111 (115)
T PF14663_consen   80 GYVEKELDKWFESF--NKEYVKLVEEFLSEALTN  111 (115)
T ss_pred             hHHHHHHHHHHHcc--cHHHHHHHHHHHHHHHhc
Confidence            23556677888755  788888888888876553

>PTZ00429 beta-adaptin; Provisional

Probab=86.00  E-value=1.9  Score=42.78  Aligned_cols=63  Identities=10%  Similarity=0.065  Sum_probs=42.4

Q ss_pred             HhhhcCCcHHHHHHHHHHHHhhc-CCchhhHHhhhcCChhHHHHhhcCCchhHHHHHHHHHHHhcCC
Q 030369           69 LDCITEPNEKLVEFGVGGICNAS-VDPANAAIITKSGGIPLIIECLSSPVRNTVNHALGALYYLCSM  134 (178)
Q Consensus        69 ld~L~~~n~~l~EfAiggLcNL~-~D~~nk~~I~~~gGi~~li~lLsS~~~evv~~AlttL~~L~~~  134 (178)
                      ..+|...++-+..-|+.|+..+- .||.   .+.+.|=++.|.++|+++++.|+.||+.+|+.+...
T Consensus       146 kk~L~D~~pYVRKtAalai~Kly~~~pe---lv~~~~~~~~L~~LL~D~dp~Vv~nAl~aL~eI~~~  209 (746)
T PTZ00429        146 RRAVADPDPYVRKTAAMGLGKLFHDDMQ---LFYQQDFKKDLVELLNDNNPVVASNAAAIVCEVNDY  209 (746)
T ss_pred             HHHhcCCCHHHHHHHHHHHHHHHhhCcc---cccccchHHHHHHHhcCCCccHHHHHHHHHHHHHHh
Confidence            34444556666666666666663 3342   233344467888889999999999999999888643

>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing

Probab=85.93  E-value=1.5  Score=40.03  Aligned_cols=71  Identities=17%  Similarity=0.377  Sum_probs=57.1

Q ss_pred             hhhhcc-CcccHHHhhhccChHHHHhhhc-CC---cHHHHHHHHHHHHhhcCCchhhHHhhhcCChhHHHHhhcCC
Q 030369           46 LANFAY-DPYNYTFLRQLNVLELFLDCIT-EP---NEKLVEFGVGGICNASVDPANAAIITKSGGIPLIIECLSSP  116 (178)
Q Consensus        46 LaNfAy-DP~N~~~LrqL~vidlfld~L~-~~---n~~l~EfAiggLcNL~~D~~nk~~I~~~gGi~~li~lLsS~  116 (178)
                      +.+|-+ ||-.+..|.+.|+++.|++.+. .+   +..++----.+|.=+|+...-.+.+.+.+-++.+.+++.||
T Consensus       133 vs~~I~nePT~~~~l~e~Gl~~~~L~~i~~~~i~~s~e~l~~lP~~l~AicLN~~Gl~~~~~~~~l~~~f~if~s~  208 (379)
T PF06025_consen  133 VSDFIHNEPTSFSILQEAGLIDAFLDAITAKGILPSSEVLTSLPNVLSAICLNNRGLEKVKSSNPLDKLFEIFTSP  208 (379)
T ss_pred             HHHHHhcCCchhHHHHHcCChHHHHHHHhccCCCCcHHHHHHHHHHHhHHhcCHHHHHHHHhcChHHHHHHHhCCH
Confidence            456664 5999999999999999999999 33   34444444456666789999999999999999999998877

This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO.

>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=84.37  E-value=4.7  Score=40.27  Aligned_cols=155  Identities=15%  Similarity=0.162  Sum_probs=99.4

Q ss_pred             ChHHHHHHHHHHhhcCChHHHHHHHHHHhhhhccCcccHHH----hhhcc-ChHHHHhhhcCCcHHHHHHHHHHHHhhcC
Q 030369           18 PRLQYLQELVSQFQNSTDEERKEKIVANLANFAYDPYNYTF----LRQLN-VLELFLDCITEPNEKLVEFGVGGICNASV   92 (178)
Q Consensus        18 ~R~~ylq~LV~efq~t~~~e~keqvlanLaNfAyDP~N~~~----LrqL~-vidlfld~L~~~n~~l~EfAiggLcNL~~   92 (178)
                      ++.|-|+.|++-.-.+ +.-..|-++.+|---.=|.--.--    =|=++ .||-|+.-.+.+++++.-+|++|+--...
T Consensus       125 ~wpelLp~L~~~L~s~-d~n~~EgA~~AL~KIcEDsa~~lds~~~~rpl~~mipkfl~f~~h~spkiRs~A~~cvNq~i~  203 (885)
T KOG2023|consen  125 HWPELLPQLCELLDSP-DYNTCEGAFGALQKICEDSAQFLDSDVLTRPLNIMIPKFLQFFKHPSPKIRSHAVGCVNQFII  203 (885)
T ss_pred             cchhHHHHHHHHhcCC-cccccchhHHHHHHHHhhhHHHHhhhcccCchHHhHHHHHHHHhCCChhHHHHHHhhhhheee
Confidence            4688899998866544 322233333333222211100000    02222 47889999999999999999999987776


Q ss_pred             CchhhHHhhhcCChhHHHHhhcCCchhHHHHHHHHHHHhcCC-cccccccchHHHHHHHHhhhhcccchhHHHhHHHHHH
Q 030369           93 DPANAAIITKSGGIPLIIECLSSPVRNTVNHALGALYYLCSM-STKEEILKPEVVDVIRRYAAAESVNVSFSNLAKAFLD  171 (178)
Q Consensus        93 D~~nk~~I~~~gGi~~li~lLsS~~~evv~~AlttL~~L~~~-~sr~~I~~p~ll~ll~~~~~~~~~~~~~~nla~~fL~  171 (178)
                      .-+-.-+..=-.=++.+..+-..++++|-++.-.+|.+|..- ..|-.=+-+.+++.|...-+  +++..++==|+-|.-
T Consensus       204 ~~~qal~~~iD~Fle~lFalanD~~~eVRk~vC~alv~Llevr~dkl~phl~~IveyML~~tq--d~dE~VALEACEFwl  281 (885)
T KOG2023|consen  204 IQTQALYVHIDKFLEILFALANDEDPEVRKNVCRALVFLLEVRPDKLVPHLDNIVEYMLQRTQ--DVDENVALEACEFWL  281 (885)
T ss_pred             cCcHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhcHHhcccchHHHHHHHHHHcc--CcchhHHHHHHHHHH
Confidence            655444442111234455555888999999999999999844 23344446889999988877  445668888888887


Q ss_pred             hhcc
Q 030369          172 KHVT  175 (178)
Q Consensus       172 ~~~~  175 (178)
                      -++.
T Consensus       282 a~ae  285 (885)
T KOG2023|consen  282 ALAE  285 (885)
T ss_pred             HHhc
Confidence            6654

>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term

Probab=84.26  E-value=3.5  Score=37.50  Aligned_cols=103  Identities=16%  Similarity=0.357  Sum_probs=75.3

Q ss_pred             CChHHHHHHHHHHhhhhc-c--CcccHHHhhhccChHHHHhhhcCCcHHHHHHHHHHHHhhc-CCchhhHHhhhcCChhH
Q 030369           33 STDEERKEKIVANLANFA-Y--DPYNYTFLRQLNVLELFLDCITEPNEKLVEFGVGGICNAS-VDPANAAIITKSGGIPL  108 (178)
Q Consensus        33 t~~~e~keqvlanLaNfA-y--DP~N~~~LrqL~vidlfld~L~~~n~~l~EfAiggLcNL~-~D~~nk~~I~~~gGi~~  108 (178)
                      .+++.-|||++.=.-=|. +  +|..    ---+|+-.++.+...+++.+..-++.-||.++ .||.   .+.+.||+..
T Consensus        79 ~~~~~ER~QALkliR~~l~~~~~~~~----~~~~vvralvaiae~~~D~lr~~cletL~El~l~~P~---lv~~~gG~~~  151 (371)
T PF14664_consen   79 NKNDVEREQALKLIRAFLEIKKGPKE----IPRGVVRALVAIAEHEDDRLRRICLETLCELALLNPE---LVAECGGIRV  151 (371)
T ss_pred             CCChHHHHHHHHHHHHHHHhcCCccc----CCHHHHHHHHHHHhCCchHHHHHHHHHHHHHHhhCHH---HHHHcCCHHH
Confidence            456777888876543333 3  2221    13467778888888889999999999999997 4564   5678899999


Q ss_pred             HHHhhcCCchhHHHHHHHHHHHhcCC-cccccccc
Q 030369          109 IIECLSSPVRNTVNHALGALYYLCSM-STKEEILK  142 (178)
Q Consensus       109 li~lLsS~~~evv~~AlttL~~L~~~-~sr~~I~~  142 (178)
                      |++.+.++.-++....+.++.++++. .+|.-++.
T Consensus       152 L~~~l~d~~~~~~~~l~~~lL~lLd~p~tR~yl~~  186 (371)
T PF14664_consen  152 LLRALIDGSFSISESLLDTLLYLLDSPRTRKYLRP  186 (371)
T ss_pred             HHHHHHhccHhHHHHHHHHHHHHhCCcchhhhhcC
Confidence            99998765556778888888888866 67775553

>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]

Probab=83.84  E-value=2.2  Score=42.53  Aligned_cols=116  Identities=17%  Similarity=0.238  Sum_probs=72.4

Q ss_pred             CCCChHHHHHHHHHHhhcCChHHHHHHHHHHhhhhc-cCcc-----------------c---HHHhhhc----------c
Q 030369           15 SGTPRLQYLQELVSQFQNSTDEERKEKIVANLANFA-YDPY-----------------N---YTFLRQL----------N   63 (178)
Q Consensus        15 ~g~~R~~ylq~LV~efq~t~~~e~keqvlanLaNfA-yDP~-----------------N---~~~LrqL----------~   63 (178)
                      .|-+=..|.-+.+-.-. |.+.|.|.=+=-=|-+|| ++|.                 =   ...||-+          .
T Consensus        49 ~G~dmssLf~dViK~~~-trd~ElKrL~ylYl~~yak~~P~~~lLavNti~kDl~d~N~~iR~~AlR~ls~l~~~el~~~  127 (757)
T COG5096          49 LGEDMSSLFPDVIKNVA-TRDVELKRLLYLYLERYAKLKPELALLAVNTIQKDLQDPNEEIRGFALRTLSLLRVKELLGN  127 (757)
T ss_pred             cCCChHHHHHHHHHHHH-hcCHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHhcChHHHHHH
Confidence            34455666666666666 778888776666666666 6661                 0   0112221          2


Q ss_pred             ChHHHHhhhcCCcHHHHHHHHHHHHhhc-CCchhhHHhhhcCChhHHHHhhcCCchhHHHHHHHHHHHhcCC
Q 030369           64 VLELFLDCITEPNEKLVEFGVGGICNAS-VDPANAAIITKSGGIPLIIECLSSPVRNTVNHALGALYYLCSM  134 (178)
Q Consensus        64 vidlfld~L~~~n~~l~EfAiggLcNL~-~D~~nk~~I~~~gGi~~li~lLsS~~~evv~~AlttL~~L~~~  134 (178)
                      ++++..++|+.+++-+..-|+.|+.++= +|   +..+.+.|-+..+..++++++|.++.+|+.+|+-+...
T Consensus       128 ~~~~ik~~l~d~~ayVRk~Aalav~kly~ld---~~l~~~~g~~~~l~~l~~D~dP~Vi~nAl~sl~~i~~e  196 (757)
T COG5096         128 IIDPIKKLLTDPHAYVRKTAALAVAKLYRLD---KDLYHELGLIDILKELVADSDPIVIANALASLAEIDPE  196 (757)
T ss_pred             HHHHHHHHccCCcHHHHHHHHHHHHHHHhcC---HhhhhcccHHHHHHHHhhCCCchHHHHHHHHHHHhchh
Confidence            3455556666667777777777777772 43   34444555666777777777888888888888776643

>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []

Probab=83.39  E-value=1.9  Score=25.16  Aligned_cols=27  Identities=19%  Similarity=0.383  Sum_probs=22.7

Q ss_pred             hhHHHHhhcCCchhHHHHHHHHHHHhc
Q 030369          106 IPLIIECLSSPVRNTVNHALGALYYLC  132 (178)
Q Consensus       106 i~~li~lLsS~~~evv~~AlttL~~L~  132 (178)
                      +|.+.+++++|+++|-..|+.+|-.++
T Consensus         2 lp~l~~~l~D~~~~VR~~a~~~l~~i~   28 (31)
T PF02985_consen    2 LPILLQLLNDPSPEVRQAAAECLGAIA   28 (31)
T ss_dssp             HHHHHHHHT-SSHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence            688999999999999999998887654

Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....

>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins

Probab=82.04  E-value=3.4  Score=37.52  Aligned_cols=112  Identities=14%  Similarity=0.234  Sum_probs=66.6

Q ss_pred             HHHHHHHHHhhcCChHHHHHHHHHHhhhhccC-c-----ccHHHhh---h----ccChHHHHhhhcCCcHHHHHHHHHHH
Q 030369           21 QYLQELVSQFQNSTDEERKEKIVANLANFAYD-P-----YNYTFLR---Q----LNVLELFLDCITEPNEKLVEFGVGGI   87 (178)
Q Consensus        21 ~ylq~LV~efq~t~~~e~keqvlanLaNfAyD-P-----~N~~~Lr---q----L~vidlfld~L~~~n~~l~EfAiggL   87 (178)
                      +|+..|++-+-+   .+....+...+.=+.-| |     .|+.-.|   +    -.+++.+++...+.+....+.-.-||
T Consensus       271 ~~~~~L~~lL~~---~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~~~~p~L~~~~~~~~~~~k~~yL~AL  347 (415)
T PF12460_consen  271 ELLDKLLELLSS---PELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFTQVLPKLLEGFKEADDEIKSNYLTAL  347 (415)
T ss_pred             HHHHHHHHHhCC---hhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHHHHHHHHHHHHhhcChhhHHHHHHHH
Confidence            555566654443   34444444444444444 1     2222222   2    24566666666665544555556677


Q ss_pred             HhhcCCchhhHHhhhcC-ChhHHHHhhcCCchhHHHHHHHHHHHhcCCc
Q 030369           88 CNASVDPANAAIITKSG-GIPLIIECLSSPVRNTVNHALGALYYLCSMS  135 (178)
Q Consensus        88 cNL~~D~~nk~~I~~~g-Gi~~li~lLsS~~~evv~~AlttL~~L~~~~  135 (178)
                      +++.-.-......-+-+ =+|++++.|+.+++++..+++.||.-++.+.
T Consensus       348 s~ll~~vP~~vl~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~  396 (415)
T PF12460_consen  348 SHLLKNVPKSVLLPELPTLLPLLLQSLSLPDADVLLSSLETLKMILEEA  396 (415)
T ss_pred             HHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcC
Confidence            77755422333333322 3588999999999999999999999998663

MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].

>PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function

Probab=81.97  E-value=9  Score=31.91  Aligned_cols=97  Identities=15%  Similarity=0.136  Sum_probs=69.1

Q ss_pred             CCChHHHHHHHHHHhhc---C-ChHHHHHH-HHHHhhhhccCcccHHHhhhcc--C--hHHHHhhhcCCcHHHHHHHHHH
Q 030369           16 GTPRLQYLQELVSQFQN---S-TDEERKEK-IVANLANFAYDPYNYTFLRQLN--V--LELFLDCITEPNEKLVEFGVGG   86 (178)
Q Consensus        16 g~~R~~ylq~LV~efq~---t-~~~e~keq-vlanLaNfAyDP~N~~~LrqL~--v--idlfld~L~~~n~~l~EfAigg   86 (178)
                      ...+-.||-.||+.|-.   . .+..+.-+ +..=|+|.+.=|.=+.++..-+  .  |.-++-.++..+.....=++|.
T Consensus        47 ~~~~~~~l~~Ll~~F~~g~~~~~n~~~~~~yla~vl~NlS~~~~gR~~~l~~~~~~~~l~kLl~ft~~~s~iRR~Gva~~  126 (192)
T PF04063_consen   47 VSLSGFYLDKLLDLFVKGADPSYNKKDNYDYLASVLANLSQLPEGRQFFLDPQRYDGPLQKLLPFTEHKSVIRRGGVAGT  126 (192)
T ss_pred             cchhHHHHHHHHHHHHcCCcccCCCCcchhHHHHHHHHhcCCHHHHHHHhCchhhhhHHHHHHHHhccCcHHHHHHHHHH
Confidence            34466899999999988   1 23344433 4444788898898888887653  2  5556666666688888888899


Q ss_pred             HHhhcCCchhhHHhhhcCChhHHHHh
Q 030369           87 ICNASVDPANAAIITKSGGIPLIIEC  112 (178)
Q Consensus        87 LcNL~~D~~nk~~I~~~gGi~~li~l  112 (178)
                      |=|||-|...-..++..+++..+-.+
T Consensus       127 IrNccFd~~~H~~LL~~~~~~iLp~L  152 (192)
T PF04063_consen  127 IRNCCFDTDSHEWLLSDDEVDILPYL  152 (192)
T ss_pred             HHHhhccHhHHHHhcCchhhhhHHHH
Confidence            99999999988888875545444433

It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO).

>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1

Probab=81.03  E-value=8.8  Score=33.65  Aligned_cols=120  Identities=14%  Similarity=0.257  Sum_probs=75.9

Q ss_pred             hhccCcccHHHhhhccChHHHHhhhc------CCcHHHHHH---HHHHHHhhcCCchhhHHhhhcCChhHHHHhh-cCCc
Q 030369           48 NFAYDPYNYTFLRQLNVLELFLDCIT------EPNEKLVEF---GVGGICNASVDPANAAIITKSGGIPLIIECL-SSPV  117 (178)
Q Consensus        48 NfAyDP~N~~~LrqL~vidlfld~L~------~~n~~l~Ef---AiggLcNL~~D~~nk~~I~~~gGi~~li~lL-sS~~  117 (178)
                      +|-|+..    .|=+..++.+++...      +.++.++-.   -+-|+|=  +.|..|..+-+..+++.++.+| .+..
T Consensus        74 ~Fe~Nl~----~~Lv~~l~~l~~~~~~~~~~~~~~~~li~~aL~vLQGl~L--LHp~Sr~lF~r~~~m~lll~LL~~~~~  147 (257)
T PF08045_consen   74 GFEWNLA----SRLVSWLDRLLGRGSHIDGDSPSNDSLIALALRVLQGLCL--LHPPSRKLFHREQNMELLLDLLSPSNP  147 (257)
T ss_pred             Hhhcchh----hhhHHHHHHHHhhcccccCcccchhHHHHHHHHHHHHHHH--cCchHHHHHhhhhhHHHHHHHhccCCC
Confidence            4555443    333444555555544      124444444   3445543  4689999999999999999999 4455


Q ss_pred             hhHHHHHHHHHHHhcCC--ccccccc----chHHHHHHHHhhhhcccchhHHHhHHHHHHhhccCC
Q 030369          118 RNTVNHALGALYYLCSM--STKEEIL----KPEVVDVIRRYAAAESVNVSFSNLAKAFLDKHVTEN  177 (178)
Q Consensus       118 ~evv~~AlttL~~L~~~--~sr~~I~----~p~ll~ll~~~~~~~~~~~~~~nla~~fL~~~~~~~  177 (178)
                      +.++..++.||.-++-+  .+-..+.    ...|..++++-+.    ++.++=++--||-=|+.+.
T Consensus       148 ~~i~~a~L~tLv~iLld~p~N~r~FE~~~Gl~~v~~llk~~~~----~~~~r~K~~EFL~fyl~~E  209 (257)
T PF08045_consen  148 PAIQSACLDTLVCILLDSPENQRDFEELNGLSTVCSLLKSKST----DRELRLKCIEFLYFYLMPE  209 (257)
T ss_pred             chHHHHHHHHHHHHHHcChHHHHHHHHhCCHHHHHHHHccccc----cHHHhHHHHHHHHHHHccc
Confidence            89999999999877733  3333443    2566666655444    3456666777887776653

Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].

>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]

Probab=80.73  E-value=20  Score=36.10  Aligned_cols=65  Identities=20%  Similarity=0.154  Sum_probs=52.5

Q ss_pred             ccChHHHHhhhcCCcHHHHHHHHHHHHhhcCCchhhHHhhhcCChhHHHHhhcCCchhHHHHHHHHHHHhc
Q 030369           62 LNVLELFLDCITEPNEKLVEFGVGGICNASVDPANAAIITKSGGIPLIIECLSSPVRNTVNHALGALYYLC  132 (178)
Q Consensus        62 L~vidlfld~L~~~n~~l~EfAiggLcNL~~D~~nk~~I~~~gGi~~li~lLsS~~~evv~~AlttL~~L~  132 (178)
                      +=++..|..-|+.+|+.++-||+--++-+ -++.--.++     +++|.+|+.++++.|=+.|+-++..+.
T Consensus        91 lLavNti~kDl~d~N~~iR~~AlR~ls~l-~~~el~~~~-----~~~ik~~l~d~~ayVRk~Aalav~kly  155 (757)
T COG5096          91 LLAVNTIQKDLQDPNEEIRGFALRTLSLL-RVKELLGNI-----IDPIKKLLTDPHAYVRKTAALAVAKLY  155 (757)
T ss_pred             HHHHHHHHhhccCCCHHHHHHHHHHHHhc-ChHHHHHHH-----HHHHHHHccCCcHHHHHHHHHHHHHHH
Confidence            45778899999999999999999988866 334444444     689999999999999888888876555

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	178
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	2e-14
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	9e-12
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	4e-11
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	6e-10
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	7e-08
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	1e-07
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	2e-14
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	3e-11
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	4e-11
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	1e-10
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	5e-10
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	8e-07
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	3e-14
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	2e-11
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	2e-11
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	3e-11
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	3e-10
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	4e-10
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	3e-07
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	1e-04
3nmz_A	458	APC variant protein; protein-protein complex, arma	4e-11
3nmz_A	458	APC variant protein; protein-protein complex, arma	1e-07
3nmz_A	458	APC variant protein; protein-protein complex, arma	9e-07
3nmz_A	458	APC variant protein; protein-protein complex, arma	2e-06
3nmz_A	458	APC variant protein; protein-protein complex, arma	1e-05
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	8e-11
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	2e-10
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	3e-07
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	8e-06
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	2e-09
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	8e-08
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	3e-05
1xqr_A	296	HSPBP1 protein; armadillo repeat, superhelical twi	4e-09
1xqr_A	296	HSPBP1 protein; armadillo repeat, superhelical twi	1e-08
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	4e-08
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	9e-06
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	9e-06
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	6e-08
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	8e-08
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	3e-06
1wa5_B	530	Importin alpha subunit; nuclear transport/complex,	1e-06
1wa5_B	530	Importin alpha subunit; nuclear transport/complex,	2e-06
1wa5_B	530	Importin alpha subunit; nuclear transport/complex,	3e-06
3oqs_A	510	Importin subunit alpha-2; importin alpha, karyophe	2e-06
3oqs_A	510	Importin subunit alpha-2; importin alpha, karyophe	4e-06
3oqs_A	510	Importin subunit alpha-2; importin alpha, karyophe	1e-05
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	1e-05
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	4e-04
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	7e-04

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780

 Score = 69.7 bits (170), Expect = 2e-14
 Identities = 28/129 (21%), Positives = 45/129 (34%), Gaps = 4/129 (3%)

Query: 14  RSGTPRLQYLQELVSQFQNSTDEERKEKIVAN----LANFAYDPYNYTFLRQLNVLELFL 69
                  Q    +    Q   +  R E+IV      L   A D +N   +R LN + LF+
Sbjct: 540 VRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEACTGALHILARDIHNRIVIRGLNTIPLFV 599

Query: 70  DCITEPNEKLVEFGVGGICNASVDPANAAIITKSGGIPLIIECLSSPVRNTVNHALGALY 129
             +  P E +     G +C  + D   A  I   G    + E L S       +A   L+
Sbjct: 600 QLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLF 659

Query: 130 YLCSMSTKE 138
            +     ++
Sbjct: 660 RMSEDKPQD 668

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780

 Score = 61.6 bits (149), Expect = 9e-12
 Identities = 25/115 (21%), Positives = 45/115 (39%), Gaps = 3/115 (2%)

Query: 23  LQELVSQFQNSTDEERKEKIVANLANFA-YDPYNYTFLRQLNVLELFLDCITEPNEKLV- 80
           + EL  +  N  D+    K    +   +  +   +  +R   ++   +  +   N+    
Sbjct: 152 IPELT-KLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETA 210

Query: 81  EFGVGGICNASVDPANAAIITKSGGIPLIIECLSSPVRNTVNHALGALYYLCSMS 135
               G + N S        I KSGGIP ++  L SPV + + HA+  L+ L    
Sbjct: 211 RCTSGTLHNLSHHREGLLAIFKSGGIPALVNMLGSPVDSVLFHAITTLHNLLLHQ 265

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780

 Score = 59.7 bits (144), Expect = 4e-11
 Identities = 17/128 (13%), Positives = 42/128 (32%), Gaps = 3/128 (2%)

Query: 23  LQELVSQFQNSTDEERKEKIVANLANFAYDPYNYTFLRQLNVLELFLDCITEPNEKLVEF 82
           +  +V   QN+ D E        L N ++       + +   +   ++ +  P + ++  
Sbjct: 194 VSAIVRTMQNTNDVETARCTSGTLHNLSHHREGLLAIFKSGGIPALVNMLGSPVDSVLFH 253

Query: 83  GVGGICN-ASVDPANAAIITKSGGIPLIIECLSSPVRNTVNHALGALYYLCSMS--TKEE 139
            +  + N           +  +GG+  ++  L+      +      L  L   +  +K  
Sbjct: 254 AITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLI 313

Query: 140 ILKPEVVD 147
           IL      
Sbjct: 314 ILASGGPQ 321

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780

 Score = 56.2 bits (135), Expect = 6e-10
 Identities = 24/124 (19%), Positives = 50/124 (40%), Gaps = 5/124 (4%)

Query: 32  NSTDEERKEKIVANLANFAY-DPYNYTFLRQLNVLELFLDCITEPN-EKLVEFGVGGICN 89
           N T+ +        L   AY +  +   +      +  ++ +     EKL+      +  
Sbjct: 286 NKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKV 345

Query: 90  ASVDPANAAIITKSGGIPLIIECLSSPVRNTVNHALGALYYLCSMSTKEEILK---PEVV 146
            SV  +N   I ++GG+  +   L+ P +  V + L  L  L   +TK+E ++     +V
Sbjct: 346 LSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLV 405

Query: 147 DVIR 150
            ++ 
Sbjct: 406 QLLG 409

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780

 Score = 50.4 bits (120), Expect = 7e-08
 Identities = 19/131 (14%), Positives = 46/131 (35%), Gaps = 9/131 (6%)

Query: 20  LQYLQELVSQFQNSTDEERKEKIVANLANFAYDPYNYTFLRQLNVLELFLDCITEPNEKL 79
           +Q L   ++       +   +  +  L N +        +    +L   +  +   +  +
Sbjct: 362 MQALGLHLT----DPSQRLVQNCLWTLRNLSDAATKQEGME--GLLGTLVQLLGSDDINV 415

Query: 80  VEFGVGGICN-ASVDPANAAIITKSGGIPLIIECL--SSPVRNTVNHALGALYYLCSMST 136
           V    G + N    +  N  ++ + GGI  ++  +  +    +    A+ AL +L S   
Sbjct: 416 VTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQ 475

Query: 137 KEEILKPEVVD 147
             E+ +  V  
Sbjct: 476 DAEMAQNAVRL 486

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780

 Score = 49.6 bits (118), Expect = 1e-07
 Identities = 18/110 (16%), Positives = 38/110 (34%), Gaps = 5/110 (4%)

Query: 31  QNSTDEERKEKIVANLANFAYD----PYNYTFLRQLNVLELFLDCITEPNEKLVEFGVGG 86
           +    E+  E  +  L +              +R    L + +  +  P+   +     G
Sbjct: 452 RAGDREDITEPAICALRHLTSRHQDAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVG 511

Query: 87  -ICNASVDPANAAIITKSGGIPLIIECLSSPVRNTVNHALGALYYLCSMS 135
            I N ++ PAN A + + G IP +++ L    ++T             + 
Sbjct: 512 LIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVE 561

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644

 Score = 69.2 bits (169), Expect = 2e-14
 Identities = 28/131 (21%), Positives = 45/131 (34%), Gaps = 4/131 (3%)

Query: 14  RSGTPRLQYLQELVSQFQNSTDEERKEKIVAN----LANFAYDPYNYTFLRQLNVLELFL 69
                  Q    +    Q   +  R E+IV      L   A D +N   +R LN + LF+
Sbjct: 404 VRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFV 463

Query: 70  DCITEPNEKLVEFGVGGICNASVDPANAAIITKSGGIPLIIECLSSPVRNTVNHALGALY 129
             +  P E +     G +C  + D   A  I   G    + E L S       +A   L+
Sbjct: 464 QLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLF 523

Query: 130 YLCSMSTKEEI 140
            +     ++  
Sbjct: 524 RMSEDKPQDYK 534

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644

 Score = 59.9 bits (145), Expect = 3e-11
 Identities = 23/127 (18%), Positives = 48/127 (37%), Gaps = 4/127 (3%)

Query: 23  LQELVSQFQNSTDEERKEKIVANLANFAYDPYNYTFLRQLNVLELFLDCITEPNEKLVEF 82
            Q LV+  +  T E+        L   +    N   + +   ++     +T+P+++LV+ 
Sbjct: 184 PQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQN 243

Query: 83  GVGGICNASVDPANAAIITKSGGIPLIIECLSSPVRNTVNHALGALYYLCSMST--KEEI 140
            +  + N S            G +  +++ L S   N V  A G L  L   +   K  +
Sbjct: 244 CLWTLRNLSDAATKQ--EGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMV 301

Query: 141 LKPEVVD 147
            +   ++
Sbjct: 302 CQVGGIE 308

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644

 Score = 59.6 bits (144), Expect = 4e-11
 Identities = 20/137 (14%), Positives = 49/137 (35%), Gaps = 7/137 (5%)

Query: 23  LQELVSQFQNSTDEERKEKIVANLANFAYDPYNYTFLRQLNVLELFLDCITEPNEKLVEF 82
           +  +V   QN+ D E        L N ++       + +   +   +  +  P + ++ +
Sbjct: 58  VSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFY 117

Query: 83  GVGGICN-ASVDPANAAIITKSGGIPLIIECLSSPVRNTVNHALGALYYLCSMS--TKEE 139
            +  + N           +  +GG+  ++  L+      +      L  L   +  +K  
Sbjct: 118 AITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLI 177

Query: 140 ILK----PEVVDVIRRY 152
           IL       +V+++R Y
Sbjct: 178 ILASGGPQALVNIMRTY 194

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644

 Score = 58.4 bits (141), Expect = 1e-10
 Identities = 26/127 (20%), Positives = 47/127 (37%), Gaps = 6/127 (4%)

Query: 23  LQELVSQFQNSTDEERKEKIVANLANFAY-DPYNYTFLRQLNVLELFLDCITEPNEKLV- 80
           + EL        D+    K    +   +  +   +  +R   ++   +  +   N+    
Sbjct: 16  IPELTKLLN-DEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETA 74

Query: 81  EFGVGGICNASVDPANAAIITKSGGIPLIIECLSSPVRNTVNHALGALYYLCSMSTKEEI 140
               G + N S        I KSGGIP +++ L SPV + + +A+  L+ L       E 
Sbjct: 75  RCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQ---EG 131

Query: 141 LKPEVVD 147
            K  V  
Sbjct: 132 AKMAVRL 138

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644

 Score = 56.5 bits (136), Expect = 5e-10
 Identities = 29/147 (19%), Positives = 56/147 (38%), Gaps = 15/147 (10%)

Query: 32  NSTDEERKEKIVANLANFAY-DPYNYTFLRQLNVLELFLDCITEPN-EKLVEFGVGGICN 89
           N T+ +        L   AY +  +   +      +  ++ +     EKL+      +  
Sbjct: 150 NKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKV 209

Query: 90  ASVDPANAAIITKSGGIPLIIECLSSPVRNTVNHALGALYYLCSMSTKEEILK---PEVV 146
            SV  +N   I ++GG+  +   L+ P +  V + L  L  L   +TK+E ++     +V
Sbjct: 210 LSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLV 269

Query: 147 DVIR------RYAAAESVNVSFSNLAK 167
            ++          AA  +    SNL  
Sbjct: 270 QLLGSDDINVVTCAAGIL----SNLTC 292

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644

 Score = 47.2 bits (112), Expect = 8e-07
 Identities = 19/129 (14%), Positives = 42/129 (32%), Gaps = 6/129 (4%)

Query: 31  QNSTDEERKEKIVANLANFAYDPYNYTFLRQL----NVLELFLDCITEPNEKLVEFGVGG 86
           +    E+  E  +  L +           +        L + +  +  P+   +     G
Sbjct: 316 RAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVG 375

Query: 87  -ICNASVDPANAAIITKSGGIPLIIECLSSPVRNTVNHALGALYYLCSMS-TKEEILKPE 144
            I N ++ PAN A + + G IP +++ L    ++T             +   + E +   
Sbjct: 376 LIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEG 435

Query: 145 VVDVIRRYA 153
               +   A
Sbjct: 436 CTGALHILA 444

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529

 Score = 68.7 bits (168), Expect = 3e-14
 Identities = 28/122 (22%), Positives = 43/122 (35%), Gaps = 4/122 (3%)

Query: 14  RSGTPRLQYLQELVSQFQNSTDEERKEKIVAN----LANFAYDPYNYTFLRQLNVLELFL 69
                  Q    +    Q   +  R E+IV      L   A D +N   +R LN + LF+
Sbjct: 407 VRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFV 466

Query: 70  DCITEPNEKLVEFGVGGICNASVDPANAAIITKSGGIPLIIECLSSPVRNTVNHALGALY 129
             +  P E +     G +C  + D   A  I   G    + E L S       +A   L+
Sbjct: 467 QLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLF 526

Query: 130 YL 131
            +
Sbjct: 527 RM 528

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529

 Score = 60.6 bits (147), Expect = 2e-11
 Identities = 27/127 (21%), Positives = 48/127 (37%), Gaps = 6/127 (4%)

Query: 23  LQELVSQFQNSTDEERKEKIVANLANFAY-DPYNYTFLRQLNVLELFLDCITEPNEKLV- 80
           + EL     N  D+    K    +   +  +   +  +R   ++   +  +   N+    
Sbjct: 19  IPELTKLL-NDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETA 77

Query: 81  EFGVGGICNASVDPANAAIITKSGGIPLIIECLSSPVRNTVNHALGALYYLCSMSTKEEI 140
               G + N S        I KSGGIP +++ L SPV + + +A+  L+ L       E 
Sbjct: 78  RCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQ---EG 134

Query: 141 LKPEVVD 147
            K  V  
Sbjct: 135 AKMAVRL 141

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529

 Score = 60.2 bits (146), Expect = 2e-11
 Identities = 23/129 (17%), Positives = 50/129 (38%), Gaps = 4/129 (3%)

Query: 23  LQELVSQFQNSTDEERKEKIVANLANFAYDPYNYTFLRQLNVLELFLDCITEPNEKLVEF 82
            Q LV+  +  T E+        L   +    N   + +   ++     +T+P+++LV+ 
Sbjct: 187 PQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQN 246

Query: 83  GVGGICNASVDPANAAIITKSGGIPLIIECLSSPVRNTVNHALGALYYLCSMST--KEEI 140
            +  + N S        +   G +  +++ L S   N V  A G L  L   +   K  +
Sbjct: 247 CLWTLRNLSDAATKQEGM--EGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMV 304

Query: 141 LKPEVVDVI 149
            +   ++ +
Sbjct: 305 CQVGGIEAL 313

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529

 Score = 60.2 bits (146), Expect = 3e-11
 Identities = 20/137 (14%), Positives = 49/137 (35%), Gaps = 7/137 (5%)

Query: 23  LQELVSQFQNSTDEERKEKIVANLANFAYDPYNYTFLRQLNVLELFLDCITEPNEKLVEF 82
           +  +V   QN+ D E        L N ++       + +   +   +  +  P + ++ +
Sbjct: 61  VSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFY 120

Query: 83  GVGGICN-ASVDPANAAIITKSGGIPLIIECLSSPVRNTVNHALGALYYLCSMS--TKEE 139
            +  + N           +  +GG+  ++  L+      +      L  L   +  +K  
Sbjct: 121 AITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLI 180

Query: 140 ILK----PEVVDVIRRY 152
           IL       +V+++R Y
Sbjct: 181 ILASGGPQALVNIMRTY 197

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529

 Score = 57.1 bits (138), Expect = 3e-10
 Identities = 30/161 (18%), Positives = 51/161 (31%), Gaps = 23/161 (14%)

Query: 23  LQELVSQFQNSTDEERKEKIVANLANFAYDPYNYTFLRQLNVLELFLDCITEPN------ 76
           L  +V      +     +  V  + N A  P N+  LR+   +   +  +   +      
Sbjct: 357 LPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRR 416

Query: 77  ----------------EKLVEFGVGGICNASVDPANAAIITKSGGIPLIIECLSSPVRNT 120
                           E++VE   G +   + D  N  +I     IPL ++ L SP+ N 
Sbjct: 417 TSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENI 476

Query: 121 VNHALGALYYLCSMS-TKEEILKPEVVDVIRRYAAAESVNV 160
              A G L  L       E I        +     + +  V
Sbjct: 477 QRVAAGVLCELAQDKEAAEAIEAEGATAPLTELLHSRNEGV 517

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529

 Score = 56.7 bits (137), Expect = 4e-10
 Identities = 23/112 (20%), Positives = 45/112 (40%), Gaps = 2/112 (1%)

Query: 32  NSTDEERKEKIVANLANFAY-DPYNYTFLRQLNVLELFLDCITEPN-EKLVEFGVGGICN 89
           N T+ +        L   AY +  +   +      +  ++ +     EKL+      +  
Sbjct: 153 NKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKV 212

Query: 90  ASVDPANAAIITKSGGIPLIIECLSSPVRNTVNHALGALYYLCSMSTKEEIL 141
            SV  +N   I ++GG+  +   L+ P +  V + L  L  L   +TK+E +
Sbjct: 213 LSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGM 264

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529

 Score = 48.6 bits (116), Expect = 3e-07
 Identities = 19/131 (14%), Positives = 47/131 (35%), Gaps = 9/131 (6%)

Query: 20  LQYLQELVSQFQNSTDEERKEKIVANLANFAYDPYNYTFLRQLNVLELFLDCITEPNEKL 79
           +Q L   ++       +   +  +  L N +        +    +L   +  +   +  +
Sbjct: 229 MQALGLHLT----DPSQRLVQNCLWTLRNLSDAATKQEGME--GLLGTLVQLLGSDDINV 282

Query: 80  VEFGVGGICN-ASVDPANAAIITKSGGIPLIIECL--SSPVRNTVNHALGALYYLCSMST 136
           V    G + N    +  N  ++ + GGI  ++  +  +    +    A+ AL +L S   
Sbjct: 283 VTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQ 342

Query: 137 KEEILKPEVVD 147
           + E+ +  V  
Sbjct: 343 EAEMAQNAVRL 353

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529

 Score = 40.5 bits (95), Expect = 1e-04
 Identities = 16/113 (14%), Positives = 37/113 (32%), Gaps = 7/113 (6%)

Query: 32  NSTDEERKEKIVANLANFAY-DPYNYTFLRQLNVLELFLDCITE--PNEKLVEFGVGGIC 88
            S D          L+N    +  N   + Q+  +E  +  +      E + E  +  + 
Sbjct: 276 GSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALR 335

Query: 89  NASVDPANA----AIITKSGGIPLIIECLSSPVRNTVNHALGALYYLCSMSTK 137
           + +     A      +    G+P++++ L  P    +  A   L    ++   
Sbjct: 336 HLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPA 388

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Length = 458

 Score = 59.6 bits (144), Expect = 4e-11
 Identities = 20/119 (16%), Positives = 44/119 (36%), Gaps = 5/119 (4%)

Query: 20  LQYLQELVSQFQNSTDEERKEKIVANLANF----AYDPYNYTFLRQLNVLELFLDCITEP 75
           L +L   ++    +      E     L N     A +  +   LR+ N L+  L  +   
Sbjct: 332 LAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSH 391

Query: 76  NEKLVEFGVGGICN-ASVDPANAAIITKSGGIPLIIECLSSPVRNTVNHALGALYYLCS 133
           +  +V    G + N ++ +P +   +   G + ++   + S  +     +  AL  L +
Sbjct: 392 SLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMA 450

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Length = 458

 Score = 49.2 bits (117), Expect = 1e-07
 Identities = 24/130 (18%), Positives = 46/130 (35%), Gaps = 7/130 (5%)

Query: 20  LQYLQELVSQFQNSTDEERKEKIVANLANFAY-DPYNYTFLRQL-NVLELFLDCITEPNE 77
           LQ   E+     +      +      L N  + D  N   L  +   +   +  +   +E
Sbjct: 198 LQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESE 257

Query: 78  KLVEFGVGGICNAS--VDPANAAIITKSGGIPLIIECL-SSPVRNTVNHALGALYYLCSM 134
            L +     + N S   D  +   + + G +  ++EC       +T+   L AL+ L + 
Sbjct: 258 DLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAH 317

Query: 135 ST--KEEILK 142
            T  K +I  
Sbjct: 318 CTENKADICA 327

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Length = 458

 Score = 46.9 bits (111), Expect = 9e-07
 Identities = 20/150 (13%), Positives = 59/150 (39%), Gaps = 12/150 (8%)

Query: 23  LQELVSQFQNSTDEERKEKIVANLANFA-YDPYNYTFLRQLN-----VLELFLDCITEPN 76
           ++ L+        E   + +++ L N + +   N   +  ++     ++           
Sbjct: 288 VKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNT 347

Query: 77  EKLVEFGVGGICNAS----VDPANAAIITKSGGIPLIIECLSSPVRNTVNHALGALYYLC 132
             ++E G G + N S     +  +  I+ ++  +  +++ L S     V++A G L+ L 
Sbjct: 348 LAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLS 407

Query: 133 SMST--KEEILKPEVVDVIRRYAAAESVNV 160
           + +   +E +     V +++    ++   +
Sbjct: 408 ARNPKDQEALWDMGAVSMLKNLIHSKHKMI 437

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Length = 458

 Score = 46.1 bits (109), Expect = 2e-06
 Identities = 19/148 (12%), Positives = 41/148 (27%), Gaps = 13/148 (8%)

Query: 4   NNQRQEERTGRSGTPRLQYLQELVSQFQNSTDEERKEKIVANLANFAYDPYNYTFLRQLN 63
              R    T        +   +       +  E +    V  L   ++D  +   + +L 
Sbjct: 130 EQIRAYCETCWEWQEAHEPGMDQDKNPMPAPVEHQICPAVCVLMKLSFDEEHRHAMNELG 189

Query: 64  VLELFLDCI-----------TEPNEKLVEFGVGGICN-ASVDPAN-AAIITKSGGIPLII 110
            L+   + +              +  L  +    + N    D AN A + +  G +  ++
Sbjct: 190 GLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALV 249

Query: 111 ECLSSPVRNTVNHALGALYYLCSMSTKE 138
             L S   +        L  L   +   
Sbjct: 250 AQLKSESEDLQQVIASVLRNLSWRADVN 277

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Length = 458

 Score = 43.4 bits (102), Expect = 1e-05
 Identities = 17/126 (13%), Positives = 36/126 (28%), Gaps = 13/126 (10%)

Query: 21  QYLQELVSQFQNSTDEERKEKIVANLANF--AYDPYNYTFLRQLNVLELFLDCITEPNEK 78
             L  ++    +     R+ +++  L       +            ++   + +  P E 
Sbjct: 104 AALHNIIHSQPDDKRGRREIRVLHLLEQIRAYCETCWEWQEAHEPGMDQDKNPMPAPVEH 163

Query: 79  LVEFGVGGICNASVDPANAAIITKSGGIPLIIECLSSPV-----------RNTVNHALGA 127
            +   V  +   S D  +   + + GG+  I E L                    +A  A
Sbjct: 164 QICPAVCVLMKLSFDEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMA 223

Query: 128 LYYLCS 133
           L  L  
Sbjct: 224 LTNLTF 229

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252

 Score = 58.1 bits (141), Expect = 8e-11
 Identities = 28/142 (19%), Positives = 62/142 (43%), Gaps = 5/142 (3%)

Query: 23  LQELVSQFQNSTDEERKEKIVANLANFAYD-PYNYTFLRQLNVLELFLDCITEPNEKLVE 81
           L  LV    +  ++  +E + A L+N A         +     L   +  ++ PNE++++
Sbjct: 98  LPALVQLLSSPNEQILQEALWA-LSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQ 156

Query: 82  FGVGGICN-ASVDPANAAIITKSGGIPLIIECLSSPVRNTVNHALGALYYLCSMST--KE 138
             +  + N AS        +  +G +P +++ LSSP    +  AL AL  + S     K+
Sbjct: 157 EALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQ 216

Query: 139 EILKPEVVDVIRRYAAAESVNV 160
            + +   ++ + +  + E+  +
Sbjct: 217 AVKEAGALEKLEQLQSHENEKI 238

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252

 Score = 56.5 bits (137), Expect = 2e-10
 Identities = 22/113 (19%), Positives = 44/113 (38%), Gaps = 3/113 (2%)

Query: 23  LQELVSQFQNSTDEERKEKIVANLANFA-YDPYNYTFLRQLNVLELFLDCITEPNEKLVE 81
           L  LV    +  ++  +E + A L+N A         +     L   +  ++ PNE++++
Sbjct: 140 LPALVQLLSSPNEQILQEALWA-LSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQ 198

Query: 82  FGVGGICN-ASVDPANAAIITKSGGIPLIIECLSSPVRNTVNHALGALYYLCS 133
             +  + N AS        + ++G +  + +  S         A  AL  L S
Sbjct: 199 EALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQS 251

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252

 Score = 48.1 bits (115), Expect = 3e-07
 Identities = 25/136 (18%), Positives = 54/136 (39%), Gaps = 9/136 (6%)

Query: 23  LQELVSQFQNSTDEERKEKIVANLANFA-YDPYNYTFLRQLNVLELFLDCITEPNEKLVE 81
           L ++  Q  NS D + +       +            +     L   +  ++ PNE++++
Sbjct: 14  LPQMTQQL-NSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQ 72

Query: 82  FGVGGICN-ASVDPANAAIITKSGGIPLIIECLSSPVRNTVNHALGALYYLCSMST--KE 138
             +  + N AS        +  +G +P +++ LSSP    +  AL AL  + S      +
Sbjct: 73  EALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQ 132

Query: 139 EILK----PEVVDVIR 150
            ++     P +V ++ 
Sbjct: 133 AVIDAGALPALVQLLS 148

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252

 Score = 43.8 bits (104), Expect = 8e-06
 Identities = 14/94 (14%), Positives = 31/94 (32%), Gaps = 4/94 (4%)

Query: 55  NYTFLRQLNVLELFLDCITEPNEKLVEFGVGGICN-ASVDPANAAIITKSGGIPLIIECL 113
           ++      + L      +   + +             S        +  +G +P +++ L
Sbjct: 4   SHHHHHHGSELPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLL 63

Query: 114 SSPVRNTVNHALGALYYLCSMSTKEEILKPEVVD 147
           SSP    +  AL AL  +   ++        V+D
Sbjct: 64  SSPNEQILQEALWALSNI---ASGGNEQIQAVID 94

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210

 Score = 53.8 bits (130), Expect = 2e-09
 Identities = 22/113 (19%), Positives = 44/113 (38%), Gaps = 3/113 (2%)

Query: 23  LQELVSQFQNSTDEERKEKIVANLANFAYD-PYNYTFLRQLNVLELFLDCITEPNEKLVE 81
           L  LV    +  ++  +E + A L+N A         +     L   +  ++ PNE++++
Sbjct: 98  LPALVQLLSSPNEQILQEALWA-LSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQ 156

Query: 82  FGVGGICN-ASVDPANAAIITKSGGIPLIIECLSSPVRNTVNHALGALYYLCS 133
             +  + N AS        + ++G +  + +  S         A  AL  L S
Sbjct: 157 EALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQS 209

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210

 Score = 49.2 bits (118), Expect = 8e-08
 Identities = 21/110 (19%), Positives = 49/110 (44%), Gaps = 5/110 (4%)

Query: 43  VANLANFAYDPYNYTFLRQLNVLELFLDCITEPNEKLVEFGVGGICN-ASVDPANAAIIT 101
           ++N+A  +        +     L   +  ++ PNE++++  +  + N AS        + 
Sbjct: 78  LSNIA--SGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVI 135

Query: 102 KSGGIPLIIECLSSPVRNTVNHALGALYYLCSMST--KEEILKPEVVDVI 149
            +G +P +++ LSSP    +  AL AL  + S     K+ + +   ++ +
Sbjct: 136 DAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKL 185

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210

 Score = 41.5 bits (98), Expect = 3e-05
 Identities = 16/85 (18%), Positives = 36/85 (42%), Gaps = 4/85 (4%)

Query: 64  VLELFLDCITEPNEKLVEFGVGGICN-ASVDPANAAIITKSGGIPLIIECLSSPVRNTVN 122
            L   +  +  P+++ ++  +  +   AS        +  +G +P +++ LSSP    + 
Sbjct: 13  ELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQ 72

Query: 123 HALGALYYLCSMSTKEEILKPEVVD 147
            AL AL  +   ++        V+D
Sbjct: 73  EALWALSNI---ASGGNEQIQAVID 94

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Length = 296

 Score = 53.5 bits (128), Expect = 4e-09
 Identities = 18/127 (14%), Positives = 46/127 (36%), Gaps = 4/127 (3%)

Query: 23  LQELVSQFQNSTDEERKEKIVANLANFAYD-PYNYTFLRQLNVLELFLDCITEPNEKLVE 81
           L++L+        +  + K +  ++    +         +L+   + +  + +  +KL  
Sbjct: 126 LRKLLRLLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKV 185

Query: 82  FGVGGICN-ASVDPANAAIITKSGGIPLIIECLSSPVRNTVNHALGALYYLCSMSTK--E 138
                + N     P +   +   G +  ++  + +       H LGAL  L +   +   
Sbjct: 186 KSAFLLQNLLVGHPEHKGTLCSMGMVQQLVALVRTEHSPFHEHVLGALCSLVTDFPQGVR 245

Query: 139 EILKPEV 145
           E  +PE+
Sbjct: 246 ECREPEL 252

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Length = 296

 Score = 52.3 bits (125), Expect = 1e-08
 Identities = 11/114 (9%), Positives = 33/114 (28%), Gaps = 3/114 (2%)

Query: 23  LQELVSQFQNSTDEERKEKIVANLANFA-YDPYNYTFLRQLNVLELFLDCI-TEPNEKLV 80
           +  LV ++  +     + +    +   +         +  L  L   L  +  +  + + 
Sbjct: 83  MHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVR 142

Query: 81  EFGVGGICNASVD-PANAAIITKSGGIPLIIECLSSPVRNTVNHALGALYYLCS 133
              +  I     +  A      +  G  +++  +   V+     +   L  L  
Sbjct: 143 VKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLV 196

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450

 Score = 51.0 bits (122), Expect = 4e-08
 Identities = 17/142 (11%), Positives = 42/142 (29%), Gaps = 4/142 (2%)

Query: 23  LQELVSQFQNSTDEERKEKIVANLANFAYDPYNY-TFLRQLNVLELFLDCITEPNEKLVE 81
           L  L+  F            V  L+N          F +    L +    +   +  ++ 
Sbjct: 151 LPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKVSPCLNVLSWLLFVSDTDVLA 210

Query: 82  FGVGGICN-ASVDPANAAIITKSGGIPLIIECLSSPVRNTVNHALGALYYLCSMST--KE 138
                +   +         +  +G    ++E L       V+ AL A+  + +      +
Sbjct: 211 DACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNIVTGDDIQTQ 270

Query: 139 EILKPEVVDVIRRYAAAESVNV 160
            IL    +  +    ++   ++
Sbjct: 271 VILNCSALQSLLHLLSSPKESI 292

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450

 Score = 43.7 bits (103), Expect = 9e-06
 Identities = 17/118 (14%), Positives = 40/118 (33%), Gaps = 6/118 (5%)

Query: 20  LQYLQELVSQFQNSTDEERKEKIVANLANFAYDPY-NYTFLRQLNVLELFLDCITEPNEK 78
           L  L  L+      +D +        L+  +  P      +    V    ++ +   + K
Sbjct: 194 LNVLSWLL----FVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYK 249

Query: 79  LVEFGVGGICN-ASVDPANAAIITKSGGIPLIIECLSSPVRNTVNHALGALYYLCSMS 135
           +V   +  + N  + D     +I     +  ++  LSSP  +    A   +  + + +
Sbjct: 250 VVSPALRAVGNIVTGDDIQTQVILNCSALQSLLHLLSSPKESIKKEACWTISNITAGN 307

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450

 Score = 43.7 bits (103), Expect = 9e-06
 Identities = 20/115 (17%), Positives = 45/115 (39%), Gaps = 6/115 (5%)

Query: 23  LQELVSQFQNSTDEERKE---KIVANLANFAYDPYNYTFLRQLNVLELFLDCITEPNEKL 79
             +++     S   E++    +    L +   +P     +    V+  F++ +       
Sbjct: 22  TSDMIEM-IFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKRKENCT 80

Query: 80  VEFGVGGICN--ASVDPANAAIITKSGGIPLIIECLSSPVRNTVNHALGALYYLC 132
           ++F    +    AS +     I+ ++G +P+ IE LSS   +    A+ AL  + 
Sbjct: 81  LQFESAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIA 135

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Length = 354

 Score = 50.2 bits (120), Expect = 6e-08
 Identities = 24/130 (18%), Positives = 46/130 (35%), Gaps = 7/130 (5%)

Query: 20  LQYLQELVSQFQNSTDEERKEKIVANLANFAY-DPYNYTFLRQL-NVLELFLDCITEPNE 77
           LQ   E+     +      +      L N  + D  N   L  +   +   +  +   +E
Sbjct: 82  LQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESE 141

Query: 78  KLVEFGVGGICNAS--VDPANAAIITKSGGIPLIIECL-SSPVRNTVNHALGALYYLCSM 134
            L +     + N S   D  +   + + G +  ++EC       +T+   L AL+ L + 
Sbjct: 142 DLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAH 201

Query: 135 ST--KEEILK 142
            T  K +I  
Sbjct: 202 CTENKADICA 211

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Length = 354

 Score = 49.8 bits (119), Expect = 8e-08
 Identities = 18/148 (12%), Positives = 42/148 (28%), Gaps = 19/148 (12%)

Query: 4   NNQRQEERTGRSGTPRLQYLQELVSQFQNSTDEERKEKIVANLANFAYDPYNYTFLRQLN 63
                E +           + +  +    +  E +    V  L   ++D  +   + +L 
Sbjct: 20  CETCWEWQEAHEPG-----MDQDKNPMP-APVEHQICPAVCVLMKLSFDEEHRHAMNELG 73

Query: 64  VLELFLDCI-----------TEPNEKLVEFGVGGICN-ASVDPAN-AAIITKSGGIPLII 110
            L+   + +              +  L  +    + N    D AN A + +  G +  ++
Sbjct: 74  GLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALV 133

Query: 111 ECLSSPVRNTVNHALGALYYLCSMSTKE 138
             L S   +        L  L   +   
Sbjct: 134 AQLKSESEDLQQVIASVLRNLSWRADVN 161

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Length = 354

 Score = 45.2 bits (107), Expect = 3e-06
 Identities = 21/150 (14%), Positives = 58/150 (38%), Gaps = 12/150 (8%)

Query: 23  LQELVSQFQNSTDEERKEKIVANLANFA--YDPYNYTFLRQLNVLELFLDCITEPNE--- 77
           ++ L+        E   + +++ L N +                L   +  +T  ++   
Sbjct: 172 VKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNT 231

Query: 78  -KLVEFGVGGICNAS----VDPANAAIITKSGGIPLIIECLSSPVRNTVNHALGALYYLC 132
             ++E G G + N S     +  +  I+ ++  +  +++ L S     V++A G L+ L 
Sbjct: 232 LAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLS 291

Query: 133 SMST--KEEILKPEVVDVIRRYAAAESVNV 160
           + +   +E +     V +++    ++   +
Sbjct: 292 ARNPKDQEALWDMGAVSMLKNLIHSKHKMI 321

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Length = 530

 Score = 46.6 bits (110), Expect = 1e-06
 Identities = 27/159 (16%), Positives = 61/159 (38%), Gaps = 13/159 (8%)

Query: 21  QYLQELVSQFQNSTDEERKEKIVANLANFAYDPYNYT--FLRQLNVLELFLDCITEPNEK 78
           Q L ++  Q  NS D + +              +      + Q  V+   ++ + E   +
Sbjct: 87  QELPQMT-QQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPE 145

Query: 79  LVEFG-VGGICN-ASVDPANAAIITKSGGIPLIIECLSSPVRNTVNHALGALYYLCSMST 136
           +++      + N AS   A   ++  +  +PL I+ L +        A+ AL  +   ST
Sbjct: 146 MLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDST 205

Query: 137 --KEEILKPEVVDVIRRYAAAESVNV------SFSNLAK 167
             ++ +L+   ++ I     +   ++      + SNL +
Sbjct: 206 DYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCR 244

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Length = 530

 Score = 46.2 bits (109), Expect = 2e-06
 Identities = 17/142 (11%), Positives = 42/142 (29%), Gaps = 5/142 (3%)

Query: 23  LQELVSQFQNSTDEERKEKIVANLANFAYDPYNY-TFLRQLNVLELFLDCITEPNEKLVE 81
           ++ ++  F NS            L+N          +      L      I   + + + 
Sbjct: 217 MEPILGLF-NSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLV 275

Query: 82  FGVGGICN-ASVDPANAAIITKSGGIPLIIECLSSPVRNTVNHALGALYYLCSMST--KE 138
                I   +         +        ++E LS         AL A+  + + +    +
Sbjct: 276 DACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQ 335

Query: 139 EILKPEVVDVIRRYAAAESVNV 160
            ++   V+  +R   ++   N+
Sbjct: 336 VVINAGVLPALRLLLSSPKENI 357

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Length = 530

 Score = 45.4 bits (107), Expect = 3e-06
 Identities = 17/127 (13%), Positives = 40/127 (31%), Gaps = 3/127 (2%)

Query: 23  LQELVSQFQNSTDEERKEKIVANLANFA-YDPYNYTFLRQLNVLELFLDCITEPNEKLVE 81
            + LV +  +      +   +  + N    +      +    VL      ++ P E + +
Sbjct: 301 PKRLV-ELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKK 359

Query: 82  FGVGGICN-ASVDPANAAIITKSGGIPLIIECLSSPVRNTVNHALGALYYLCSMSTKEEI 140
                I N  + +      +  +  IP +++ L      T   A  A+    S   +   
Sbjct: 360 EACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNASSGGLQRPD 419

Query: 141 LKPEVVD 147
           +   +V 
Sbjct: 420 IIRYLVS 426

>3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510

 Score = 46.2 bits (109), Expect = 2e-06
 Identities = 16/146 (10%), Positives = 45/146 (30%), Gaps = 8/146 (5%)

Query: 23  LQELVSQFQNSTDEERKEKIVAN----LANFAY-DPYNYTFLRQLNVLELFLDCITEPNE 77
           +  L++              + N    L+N                +L   +  +   + 
Sbjct: 187 IDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDP 246

Query: 78  KLVEFGVGGICN-ASVDPANAAIITKSGGIPLIIECLSSPVRNTVNHALGALYYLCSMST 136
           +++      I            ++ K G +P +++ L +     V  AL A+  + + + 
Sbjct: 247 EVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTD 306

Query: 137 --KEEILKPEVVDVIRRYAAAESVNV 160
              ++++    + V          N+
Sbjct: 307 EQTQKVIDAGALAVFPSLLTNPKTNI 332

>3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510

 Score = 45.0 bits (106), Expect = 4e-06
 Identities = 14/119 (11%), Positives = 35/119 (29%), Gaps = 6/119 (5%)

Query: 20  LQYLQELVSQFQNSTDEERKEKIVANLANFA-YDPYNYTFLRQLNVLELFLDCITEPNEK 78
           L  L  L+    +  D E        ++            + +  V+   +  +      
Sbjct: 234 LPTLVRLL----HHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELP 289

Query: 79  LVEFGVGGICN-ASVDPANAAIITKSGGIPLIIECLSSPVRNTVNHALGALYYLCSMST 136
           +V   +  I N  +        +  +G + +    L++P  N    A   +  + +   
Sbjct: 290 IVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQ 348

>3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510

 Score = 43.5 bits (102), Expect = 1e-05
 Identities = 17/115 (14%), Positives = 37/115 (32%), Gaps = 5/115 (4%)

Query: 23  LQELVSQFQNSTDEERKEKIVANLANFAYDPYNYTF--LRQLNVLELFLDCIT-EPNEKL 79
           ++++V     S + E + +                   + +  ++  F+  +       +
Sbjct: 59  VEDIVKGIN-SNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPI 117

Query: 80  VEFGVGGICN-ASVDPANAAIITKSGGIPLIIECLSSPVRNTVNHALGALYYLCS 133
                  + N AS        +   G IP  I  L+SP  +    A+ AL  +  
Sbjct: 118 QFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAG 172

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Length = 457

 Score = 43.3 bits (101), Expect = 1e-05
 Identities = 21/118 (17%), Positives = 37/118 (31%), Gaps = 8/118 (6%)

Query: 23  LQELVSQFQNSTDEERKEKIVANLANFAYDPYN-----YTFLRQLNVLELFLDCITEPNE 77
           L ++    Q S + +      + L+N +  P            ++  L       T  +E
Sbjct: 333 LPQIARLLQ-SGNSDVVRSGASLLSNMSRHPLLHRVMGNQVFPEVTRLLTSHTGNTSNSE 391

Query: 78  KLVEFGVGGICN-ASVDPANAAIITKSGGIPLIIE-CLSSPVRNTVNHALGALYYLCS 133
            ++      + N  +  P  A     S  +  II  C SS        A   L  + S
Sbjct: 392 DILSSACYTVRNLMASQPQLAKQYFSSSMLNNIINLCRSSASPKAAEAARLLLSDMWS 449

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Length = 457

 Score = 39.0 bits (90), Expect = 4e-04
 Identities = 21/135 (15%), Positives = 42/135 (31%), Gaps = 8/135 (5%)

Query: 24  QELVSQFQNSTDEERKEKIVANLANFAYDPYNYTFLRQLNVLELFLDCITEP-NEKLVEF 82
           +     F N +D+         L     +P    +L   + +  +L+ + +   +  +E 
Sbjct: 244 KSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEA 303

Query: 83  GVGGICNASVDPANAA------IITKSGGIPLIIECLSSPVRNTVNHALGALYYLC-SMS 135
             G + N +      +      I  K  G+P I   L S   + V      L  +     
Sbjct: 304 CAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHPL 363

Query: 136 TKEEILKPEVVDVIR 150
               +      +V R
Sbjct: 364 LHRVMGNQVFPEVTR 378

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Length = 457

 Score = 38.3 bits (88), Expect = 7e-04
 Identities = 18/72 (25%), Positives = 31/72 (43%), Gaps = 1/72 (1%)

Query: 65  LELFLDCITEPNEKLVEFGVGGICN-ASVDPANAAIITKSGGIPLIIECLSSPVRNTVNH 123
           +   +  ++  +EK    G   I +    D +    + + GGI  +++ L SP +N    
Sbjct: 4   IPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQA 63

Query: 124 ALGALYYLCSMS 135
           A GAL  L   S
Sbjct: 64  AAGALRNLVFRS 75

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	178
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	99.61
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	99.61
3tt9_A	233	Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}	99.59
3l6x_A	584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	99.56
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	99.54
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	99.53
4hxt_A	252	De novo protein OR329; structural genomics, PSI-bi	99.53
4hxt_A	252	De novo protein OR329; structural genomics, PSI-bi	99.51
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	99.5
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	99.49
3tt9_A	233	Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}	99.49
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	99.45
3l6x_A	584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	99.41
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	99.37
3nmz_A	458	APC variant protein; protein-protein complex, arma	99.37
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	99.3
3tpo_A	529	Importin subunit alpha-2; nuclear import, protein	99.3
1xqr_A	296	HSPBP1 protein; armadillo repeat, superhelical twi	99.3
3ul1_B	510	Importin subunit alpha-2; arm repeat, armadillo re	99.29
3nmz_A	458	APC variant protein; protein-protein complex, arma	99.29
1xqr_A	296	HSPBP1 protein; armadillo repeat, superhelical twi	99.28
4b8j_A	528	Importin subunit alpha-1A; transport protein, nucl	99.28
3ul1_B	510	Importin subunit alpha-2; arm repeat, armadillo re	99.26
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	99.26
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	99.21
3tpo_A	529	Importin subunit alpha-2; nuclear import, protein	99.2
4b8j_A	528	Importin subunit alpha-1A; transport protein, nucl	99.2
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	99.2
1wa5_B	530	Importin alpha subunit; nuclear transport/complex,	99.18
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	99.15
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	99.11
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	99.09
1wa5_B	530	Importin alpha subunit; nuclear transport/complex,	99.01
3now_A	810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	99.0
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	98.97
3now_A	810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	98.89
3opb_A	778	SWI5-dependent HO expression protein 4; heat and a	98.63
3opb_A	778	SWI5-dependent HO expression protein 4; heat and a	98.54
4gmo_A	684	Putative uncharacterized protein; ARM, heat, solen	98.48
4gmo_A	684	Putative uncharacterized protein; ARM, heat, solen	97.72
3ltm_A	211	Alpha-REP4; protein engineering, heat-like repeat,	97.7
3ltm_A	211	Alpha-REP4; protein engineering, heat-like repeat,	97.48
3ltj_A	201	Alpharep-4; protein engineering, heat-like repeat,	97.47
3ltj_A	201	Alpharep-4; protein engineering, heat-like repeat,	97.38
3grl_A	651	General vesicular transport factor P115; vesicle t	97.22
3grl_A	651	General vesicular transport factor P115; vesicle t	97.19
1oyz_A	280	Hypothetical protein YIBA; structural genomics, PS	97.04
1oyz_A	280	Hypothetical protein YIBA; structural genomics, PS	96.76
2qk2_A	242	LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2	96.68
1te4_A	131	Conserved protein MTH187; methanobacterium thermoa	96.58
2vgl_B	591	AP-2 complex subunit beta-1; cytoplasmic vesicle,	96.38
2vgl_B	591	AP-2 complex subunit beta-1; cytoplasmic vesicle,	96.34
1ibr_B	462	P95, importin beta-1 subunit, nuclear factor; smal	96.2
3dad_A	339	FH1/FH2 domain-containing protein 1; formin, FHOD1	96.19
4fdd_A	852	Transportin-1; heat repeats, karyopherin, nuclear	96.15
4fdd_A	852	Transportin-1; heat repeats, karyopherin, nuclear	95.87
1b3u_A	588	Protein (protein phosphatase PP2A); scaffold prote	95.7
1te4_A	131	Conserved protein MTH187; methanobacterium thermoa	95.69
1w63_A	618	Adapter-related protein complex 1 gamma 1 subunit;	95.3
1b3u_A	588	Protein (protein phosphatase PP2A); scaffold prote	95.1
2qk1_A	249	Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h	94.39
2qk1_A	249	Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h	94.34
2qk2_A	242	LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2	94.02
2vgl_A	621	Adaptor protein complex AP-2, alpha 2 subunit; cyt	93.74
1ibr_B	462	P95, importin beta-1 subunit, nuclear factor; smal	93.63
2bpt_A	861	Importin beta-1 subunit; nuclear transport, nucleo	93.49
1u6g_C	1230	TIP120 protein, CAND1; cullin repeat, heat repeat,	93.41
2bpt_A	861	Importin beta-1 subunit; nuclear transport, nucleo	93.28
3dad_A	339	FH1/FH2 domain-containing protein 1; formin, FHOD1	92.62
2vgl_A	621	Adaptor protein complex AP-2, alpha 2 subunit; cyt	92.28
1w63_A	618	Adapter-related protein complex 1 gamma 1 subunit;	91.53
4ffb_C	278	Protein STU2; tubulin fold, heat repeats, cytoskel	91.45
1u6g_C	1230	TIP120 protein, CAND1; cullin repeat, heat repeat,	91.25
1qgr_A	876	Protein (importin beta subunit); transport recepto	91.13
1qgr_A	876	Protein (importin beta subunit); transport recepto	89.01
3u0r_A	507	Apoptosis inhibitor 5; heat repeat, armadillo repe	88.96
4ffb_C	278	Protein STU2; tubulin fold, heat repeats, cytoskel	84.71
3b2a_A	265	TON_1937, putative uncharacterized protein; heat-r	83.42
4ady_A	963	RPN2, 26S proteasome regulatory subunit RPN2; prot	81.21
3tjz_B	355	Coatomer subunit gamma; protein trafficking, golgi	80.41

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A

Probab=99.61  E-value=1.3e-14  Score=112.58  Aligned_cols=151  Identities=19%  Similarity=0.284  Sum_probs=126.9

Q ss_pred             HHHHHHHHhhcCChHHHHHHHHHHhhhhc-cCcccHHHhhhccChHHHHhhhcCCcHHHHHHHHHHHHhhcC-CchhhHH
Q 030369           22 YLQELVSQFQNSTDEERKEKIVANLANFA-YDPYNYTFLRQLNVLELFLDCITEPNEKLVEFGVGGICNASV-DPANAAI   99 (178)
Q Consensus        22 ylq~LV~efq~t~~~e~keqvlanLaNfA-yDP~N~~~LrqL~vidlfld~L~~~n~~l~EfAiggLcNL~~-D~~nk~~   99 (178)
                      -+..||.-.+. ++.+.+++++..|+|++ .+|.+...+.+.|+++.++..|..+++.+++.|+++|+|+|. ++..+..
T Consensus        55 ~i~~L~~lL~~-~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~  133 (210)
T 4db6_A           55 ALPALVQLLSS-PNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQA  133 (210)
T ss_dssp             HHHHHHHHTTC-SCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred             CHHHHHHHHcC-CCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHH
Confidence            35567766655 48899999999999999 589999999999999999999999999999999999999995 5777788


Q ss_pred             hhhcCChhHHHHhhcCCchhHHHHHHHHHHHhcCC--cccccccchHHHHHHHHhhhhcccchhHHHhHHHHHHhhcc
Q 030369          100 ITKSGGIPLIIECLSSPVRNTVNHALGALYYLCSM--STKEEILKPEVVDVIRRYAAAESVNVSFSNLAKAFLDKHVT  175 (178)
Q Consensus       100 I~~~gGi~~li~lLsS~~~evv~~AlttL~~L~~~--~sr~~I~~p~ll~ll~~~~~~~~~~~~~~nla~~fL~~~~~  175 (178)
                      +.+.|+++.|+++|++++++++.+|+.+|.+|+..  ..+..+.....++.|.+.-.++  +++++..|...|...++
T Consensus       134 ~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~--~~~v~~~a~~aL~~l~~  209 (210)
T 4db6_A          134 VIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHE--NEKIQKEAQEALEKLQS  209 (210)
T ss_dssp             HHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHGGGCS--CHHHHHHHHHHHHHHCC
T ss_pred             HHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHhCC--CHHHHHHHHHHHHHHhc
Confidence            99999999999999999999999999999999965  3455555444555555554544  57899999999987764

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A

Probab=99.61  E-value=1.2e-14  Score=112.91  Aligned_cols=144  Identities=19%  Similarity=0.260  Sum_probs=119.5

Q ss_pred             HHHHhhcCChHHHHHHHHHHhhhhc-cCcccHHHhhhccChHHHHhhhcCCcHHHHHHHHHHHHhhc-CCchhhHHhhhc
Q 030369           26 LVSQFQNSTDEERKEKIVANLANFA-YDPYNYTFLRQLNVLELFLDCITEPNEKLVEFGVGGICNAS-VDPANAAIITKS  103 (178)
Q Consensus        26 LV~efq~t~~~e~keqvlanLaNfA-yDP~N~~~LrqL~vidlfld~L~~~n~~l~EfAiggLcNL~-~D~~nk~~I~~~  103 (178)
                      .+..+-.+++.+.++.++..|.|++ .+|.+...+.+.++++.++.+|..+++.+++.|+.+|+|++ -++.++..|.+.
T Consensus        16 ~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~   95 (210)
T 4db6_A           16 QMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDA   95 (210)
T ss_dssp             HHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHT
T ss_pred             HHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHC
Confidence            3444445778999999999999999 78999999999999999999999999999999999999999 478999999999


Q ss_pred             CChhHHHHhhcCCchhHHHHHHHHHHHhcCC--ccccccc----chHHHHHHHHhhhhcccchhHHHhHHHHHHhhcc
Q 030369          104 GGIPLIIECLSSPVRNTVNHALGALYYLCSM--STKEEIL----KPEVVDVIRRYAAAESVNVSFSNLAKAFLDKHVT  175 (178)
Q Consensus       104 gGi~~li~lLsS~~~evv~~AlttL~~L~~~--~sr~~I~----~p~ll~ll~~~~~~~~~~~~~~nla~~fL~~~~~  175 (178)
                      ||+|.++++|++++++++..|+.+|.+|+..  ..+..+.    .|+++++|+.    +  ++.++.-|...|...+.
T Consensus        96 g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~----~--~~~v~~~a~~aL~~l~~  167 (210)
T 4db6_A           96 GALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSS----P--NEQILQEALWALSNIAS  167 (210)
T ss_dssp             TCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTC----S--CHHHHHHHHHHHHHHHT
T ss_pred             CCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcC----C--CHHHHHHHHHHHHHHHc
Confidence            9999999999999999999999999999954  2333444    3777777742    2  45666666666655443

>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}

Probab=99.59  E-value=1.6e-15  Score=127.01  Aligned_cols=127  Identities=18%  Similarity=0.220  Sum_probs=109.6

Q ss_pred             HHHHHHHhhcCCh-HHHHHHHHHHhhhhcc-CcccHHHhhhccChHHHHhhhcCCcHHHHHHHHHHHHhhcC-CchhhHH
Q 030369           23 LQELVSQFQNSTD-EERKEKIVANLANFAY-DPYNYTFLRQLNVLELFLDCITEPNEKLVEFGVGGICNASV-DPANAAI   99 (178)
Q Consensus        23 lq~LV~efq~t~~-~e~keqvlanLaNfAy-DP~N~~~LrqL~vidlfld~L~~~n~~l~EfAiggLcNL~~-D~~nk~~   99 (178)
                      |..||.-.+..+. .+.|..+.+.|.|.++ ||.|+..+++.|+|+.|++.|.++++.+++.|+++|.|++. ++.||..
T Consensus        10 i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~~nk~~   89 (233)
T 3tt9_A           10 LERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDNDNKLE   89 (233)
T ss_dssp             HHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHhCCCCchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHH
Confidence            4567776655433 2778888899999995 89999999999999999999999999999999999999998 5999999


Q ss_pred             hhhcCChhHHHHhhc-CCchhHHHHHHHHHHHhcCC-ccccccc---chHHHHHH
Q 030369          100 ITKSGGIPLIIECLS-SPVRNTVNHALGALYYLCSM-STKEEIL---KPEVVDVI  149 (178)
Q Consensus       100 I~~~gGi~~li~lLs-S~~~evv~~AlttL~~L~~~-~sr~~I~---~p~ll~ll  149 (178)
                      |.+.||||+|+++|+ ++++++..+|.++|++|... +.|..|.   .|+|++++
T Consensus        90 I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~~~~k~~i~~~~i~~Lv~ll  144 (233)
T 3tt9_A           90 VAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDKLKNLMITEALLTLTENI  144 (233)
T ss_dssp             HHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSGGGHHHHHHHHHHHHCCCC
T ss_pred             HHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcChhhHHHHHhccHHHHHHHH
Confidence            999999999999996 67899999999999999876 5677776   47777654

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A

Probab=99.56  E-value=7.4e-15  Score=137.08  Aligned_cols=144  Identities=20%  Similarity=0.247  Sum_probs=123.0

Q ss_pred             HHHHHHhhCCCCCChHHHHHHHHHHhhcCChHHHHHHHHHHhhhhcc-CcccHHHhhhccChHHHHhhhcCCcHHHHHHH
Q 030369            5 NQRQEERTGRSGTPRLQYLQELVSQFQNSTDEERKEKIVANLANFAY-DPYNYTFLRQLNVLELFLDCITEPNEKLVEFG   83 (178)
Q Consensus         5 ~~~l~~rt~~~g~~R~~ylq~LV~efq~t~~~e~keqvlanLaNfAy-DP~N~~~LrqL~vidlfld~L~~~n~~l~EfA   83 (178)
                      =.++.|+.++.+.-|..=+..||.-.+ +++.+.|+++...|.|.++ ++.|+..+++.|+|+.|+++|.++++.+++.|
T Consensus        32 ~~~~~~~~~~~~~~~~~~i~~LV~~L~-s~~~~~q~~Aa~~L~~La~~~~~~k~~V~~~G~Ip~LV~LL~s~~~~vq~~A  110 (584)
T 3l6x_A           32 LDSLRKGGPPPPNWRQPELPEVIAMLG-FRLDAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHPKKEVHLGA  110 (584)
T ss_dssp             --------CCCCCCCCCCHHHHHHHTT-CSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHGGGCSSHHHHHHH
T ss_pred             HHHHHhcCCCCCCcccccHHHHHHHHC-CCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCcHHHHHHHCCCCHHHHHHH
Confidence            345667767777778888999998876 4578999999999999996 89999999999999999999999999999999


Q ss_pred             HHHHHhhcC--CchhhHHhhhcCChhHHHHhhcC-CchhHHHHHHHHHHHhcCC-ccccccc---chHHHHHH
Q 030369           84 VGGICNASV--DPANAAIITKSGGIPLIIECLSS-PVRNTVNHALGALYYLCSM-STKEEIL---KPEVVDVI  149 (178)
Q Consensus        84 iggLcNL~~--D~~nk~~I~~~gGi~~li~lLsS-~~~evv~~AlttL~~L~~~-~sr~~I~---~p~ll~ll  149 (178)
                      +++|.||+.  ++.||..|.+.||||+|+++|++ +++++..+|..+|++|... +.+..|.   .|+|++++
T Consensus       111 a~AL~nLa~~~~~~nk~~I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~~~~~k~~I~~~alp~Lv~LL  183 (584)
T 3l6x_A          111 CGALKNISFGRDQDNKIAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSHDSIKMEIVDHALHALTDEV  183 (584)
T ss_dssp             HHHHHHHTSSSCHHHHHHHHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTTSGGGHHHHHHHTHHHHHHHT
T ss_pred             HHHHHHHHccCCHHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhhHHHHhccHHHHHHHH
Confidence            999999998  49999999999999999999976 6789999999999999976 5677776   48898877

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}

Probab=99.54  E-value=1.2e-13  Score=109.76  Aligned_cols=146  Identities=19%  Similarity=0.275  Sum_probs=121.9

Q ss_pred             HHHHHHHHhhcCChHHHHHHHHHHhhhhcc-CcccHHHhhhccChHHHHhhhcCCcHHHHHHHHHHHHhhcCCchhh-HH
Q 030369           22 YLQELVSQFQNSTDEERKEKIVANLANFAY-DPYNYTFLRQLNVLELFLDCITEPNEKLVEFGVGGICNASVDPANA-AI   99 (178)
Q Consensus        22 ylq~LV~efq~t~~~e~keqvlanLaNfAy-DP~N~~~LrqL~vidlfld~L~~~n~~l~EfAiggLcNL~~D~~nk-~~   99 (178)
                      -+..||.-.+.. +.+.+++++..|.|++. +|.|...+.+.|+++.++..|..+++.+++.|+.+|+|++.++.++ ..
T Consensus        55 ~i~~L~~lL~~~-~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~  133 (252)
T 4db8_A           55 ALPALVQLLSSP-NEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQA  133 (252)
T ss_dssp             HHHHHHHGGGCS-CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred             cHHHHHHHHcCC-CHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchHHHH
Confidence            345677666555 58999999999999997 7999999999999999999999999999999999999999999999 89


Q ss_pred             hhhcCChhHHHHhhcCCchhHHHHHHHHHHHhcCC--ccccccc----chHHHHHHHHhhhhcccchhHHHhHHHHHHhh
Q 030369          100 ITKSGGIPLIIECLSSPVRNTVNHALGALYYLCSM--STKEEIL----KPEVVDVIRRYAAAESVNVSFSNLAKAFLDKH  173 (178)
Q Consensus       100 I~~~gGi~~li~lLsS~~~evv~~AlttL~~L~~~--~sr~~I~----~p~ll~ll~~~~~~~~~~~~~~nla~~fL~~~  173 (178)
                      +.+.|++|.|+++|+++++++...|+.+|.+|+..  ..+..+.    .|+++++|.    ++  ++.++..|...|...
T Consensus       134 ~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~----~~--~~~v~~~a~~~L~~l  207 (252)
T 4db8_A          134 VIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLS----SP--NEQILQEALWALSNI  207 (252)
T ss_dssp             HHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHGGG----CS--SHHHHHHHHHHHHHH
T ss_pred             HHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHC----CC--CHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999964  2333333    377777764    22  456777776666655


Q ss_pred             c
Q 030369          174 V  174 (178)
Q Consensus       174 ~  174 (178)
                      +
T Consensus       208 ~  208 (252)
T 4db8_A          208 A  208 (252)
T ss_dssp             T
T ss_pred             h
Confidence            4

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24

Probab=99.53  E-value=4e-14  Score=125.52  Aligned_cols=127  Identities=20%  Similarity=0.260  Sum_probs=112.7

Q ss_pred             HHHHHHHhhcCChHHHHHHHHHHhhhhcc-CcccHHHhhhccChHHHHhhhcCCcHHHHHHHHHHHHhhcCC-chhhHHh
Q 030369           23 LQELVSQFQNSTDEERKEKIVANLANFAY-DPYNYTFLRQLNVLELFLDCITEPNEKLVEFGVGGICNASVD-PANAAII  100 (178)
Q Consensus        23 lq~LV~efq~t~~~e~keqvlanLaNfAy-DP~N~~~LrqL~vidlfld~L~~~n~~l~EfAiggLcNL~~D-~~nk~~I  100 (178)
                      +..||.-.+ +++.+.|++++..|.|+++ ||.++..+.+.|+|+.++.+|.++++.+++.|+++|.|++.+ +.+|..|
T Consensus         4 l~~lv~~L~-s~~~~~q~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~~k~~i   82 (457)
T 1xm9_A            4 IPKAVQYLS-SQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLET   82 (457)
T ss_dssp             HHHHHHHHH-SSCTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHH
T ss_pred             HHHHHHHHC-CCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence            345665554 4578999999999999996 467788999999999999999999999999999999999987 9999999


Q ss_pred             hhcCChhHHHHhhc-CCchhHHHHHHHHHHHhcCC-ccccccc---chHHHHHHH
Q 030369          101 TKSGGIPLIIECLS-SPVRNTVNHALGALYYLCSM-STKEEIL---KPEVVDVIR  150 (178)
Q Consensus       101 ~~~gGi~~li~lLs-S~~~evv~~AlttL~~L~~~-~sr~~I~---~p~ll~ll~  150 (178)
                      .+.||||+++++|+ +++++++..|..+|++|+.. +.|..|.   .|+|+++|.
T Consensus        83 ~~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~~~~~~~i~~g~i~~Lv~ll~  137 (457)
T 1xm9_A           83 RRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEELIADALPVLADRVI  137 (457)
T ss_dssp             HHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSSSTHHHHHHHHHHHHHHHTT
T ss_pred             HHcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcCHHhHHHHHhccHHHHHHHHh
Confidence            99999999999998 88999999999999999976 5677665   599999994

>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}

Probab=99.53  E-value=2e-13  Score=106.99  Aligned_cols=146  Identities=17%  Similarity=0.210  Sum_probs=122.0

Q ss_pred             HHHHHHHHhhcCChHHHHHHHHHHhhhhccC-cccHHHhhhccChHHHHhhhcCCcHHHHHHHHHHHHhhc-CCchhhHH
Q 030369           22 YLQELVSQFQNSTDEERKEKIVANLANFAYD-PYNYTFLRQLNVLELFLDCITEPNEKLVEFGVGGICNAS-VDPANAAI   99 (178)
Q Consensus        22 ylq~LV~efq~t~~~e~keqvlanLaNfAyD-P~N~~~LrqL~vidlfld~L~~~n~~l~EfAiggLcNL~-~D~~nk~~   99 (178)
                      .+..|+.-.+. ++.+.+++++..|+|++.+ |.+...+.+.++++.++..|..+++.+++.|+.+|+|+| .++.++..
T Consensus        45 ~i~~L~~ll~~-~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~  123 (252)
T 4hxt_A           45 GVEVLVKLLTS-TDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKA  123 (252)
T ss_dssp             HHHHHHHHTTC-SCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred             CHHHHHHHHhC-CCHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHH
Confidence            45667766655 4699999999999999988 999999999999999999999999999999999999999 78999999


Q ss_pred             hhhcCChhHHHHhhcCCchhHHHHHHHHHHHhcCC-c-cccccc----chHHHHHHHHhhhhcccchhHHHhHHHHHHhh
Q 030369          100 ITKSGGIPLIIECLSSPVRNTVNHALGALYYLCSM-S-TKEEIL----KPEVVDVIRRYAAAESVNVSFSNLAKAFLDKH  173 (178)
Q Consensus       100 I~~~gGi~~li~lLsS~~~evv~~AlttL~~L~~~-~-sr~~I~----~p~ll~ll~~~~~~~~~~~~~~nla~~fL~~~  173 (178)
                      +.+.|+++.|+++|.+++++++..|+.+|.+|+.. . .+..+.    .|.++++|.    ++  ++.++.-|...|...
T Consensus       124 ~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~----~~--~~~v~~~a~~~L~~l  197 (252)
T 4hxt_A          124 IVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLT----ST--DSEVQKEAARALANI  197 (252)
T ss_dssp             HHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTT----CS--CHHHHHHHHHHHHHH
T ss_pred             HHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCcCHHHHHHHHC----CC--CHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999964 2 334444    366666653    23  456777776666655


Q ss_pred             c
Q 030369          174 V  174 (178)
Q Consensus       174 ~  174 (178)
                      +
T Consensus       198 ~  198 (252)
T 4hxt_A          198 A  198 (252)
T ss_dssp             T
T ss_pred             H
Confidence            4

>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}

Probab=99.51  E-value=3.5e-13  Score=105.58  Aligned_cols=145  Identities=16%  Similarity=0.244  Sum_probs=119.7

Q ss_pred             HHHHHHHhhcCChHHHHHHHHHHhhhhccC-cccHHHhhhccChHHHHhhhcCCcHHHHHHHHHHHHhhcCC-chhhHHh
Q 030369           23 LQELVSQFQNSTDEERKEKIVANLANFAYD-PYNYTFLRQLNVLELFLDCITEPNEKLVEFGVGGICNASVD-PANAAII  100 (178)
Q Consensus        23 lq~LV~efq~t~~~e~keqvlanLaNfAyD-P~N~~~LrqL~vidlfld~L~~~n~~l~EfAiggLcNL~~D-~~nk~~I  100 (178)
                      +..||.-.+.. +.+.|.+++..|+|++.+ |.|...+.+.++++.++..|..+++.+++.|+.+|+|++.+ +.++..+
T Consensus         4 i~~L~~~L~~~-~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~   82 (252)
T 4hxt_A            4 VEKLVKLLTST-DSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAI   82 (252)
T ss_dssp             HHHHHHHTTCS-CHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHH
T ss_pred             HHHHHHHHcCC-CHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHHH
Confidence            45677777665 489999999999999955 67999999999999999999999999999999999999998 9999999


Q ss_pred             hhcCChhHHHHhhcCCchhHHHHHHHHHHHhcCC--cccccccc----hHHHHHHHHhhhhcccchhHHHhHHHHHHhhc
Q 030369          101 TKSGGIPLIIECLSSPVRNTVNHALGALYYLCSM--STKEEILK----PEVVDVIRRYAAAESVNVSFSNLAKAFLDKHV  174 (178)
Q Consensus       101 ~~~gGi~~li~lLsS~~~evv~~AlttL~~L~~~--~sr~~I~~----p~ll~ll~~~~~~~~~~~~~~nla~~fL~~~~  174 (178)
                      .+.||++.++++|+++++++...|+.+|.+|+..  ..+..+..    |.++++|+    ++  ++.++.-|...|...+
T Consensus        83 ~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~----~~--~~~~~~~a~~~L~~l~  156 (252)
T 4hxt_A           83 VDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLT----ST--DSEVQKEAARALANIA  156 (252)
T ss_dssp             HHTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTT----CS--CHHHHHHHHHHHHHHT
T ss_pred             HHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHc----CC--CHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999943  35555553    56665553    22  3556666655554433

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}

Probab=99.50  E-value=4.6e-13  Score=106.29  Aligned_cols=150  Identities=19%  Similarity=0.286  Sum_probs=124.1

Q ss_pred             HHHHHHHHhhcCChHHHHHHHHHHhhhhccCcccH-HHhhhccChHHHHhhhcCCcHHHHHHHHHHHHhhcC-CchhhHH
Q 030369           22 YLQELVSQFQNSTDEERKEKIVANLANFAYDPYNY-TFLRQLNVLELFLDCITEPNEKLVEFGVGGICNASV-DPANAAI   99 (178)
Q Consensus        22 ylq~LV~efq~t~~~e~keqvlanLaNfAyDP~N~-~~LrqL~vidlfld~L~~~n~~l~EfAiggLcNL~~-D~~nk~~   99 (178)
                      .+..|+.-.+. ++.+.+++++..|+|++.++.+. ..+.+.++++.+++.|..+++.+++.|+.+|+|++. ++.++..
T Consensus        97 ~i~~L~~lL~~-~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~  175 (252)
T 4db8_A           97 ALPALVQLLSS-PNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQA  175 (252)
T ss_dssp             HHHHHHHGGGC-SCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred             CHHHHHHHHcC-CCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHH
Confidence            45666666655 57899999999999999999998 999999999999999999999999999999999997 5788888


Q ss_pred             hhhcCChhHHHHhhcCCchhHHHHHHHHHHHhcCC--cccccccchHHHHHHHHhhhhcccchhHHHhHHHHHHhhc
Q 030369          100 ITKSGGIPLIIECLSSPVRNTVNHALGALYYLCSM--STKEEILKPEVVDVIRRYAAAESVNVSFSNLAKAFLDKHV  174 (178)
Q Consensus       100 I~~~gGi~~li~lLsS~~~evv~~AlttL~~L~~~--~sr~~I~~p~ll~ll~~~~~~~~~~~~~~nla~~fL~~~~  174 (178)
                      +.+.|+++.|+++|.++++++...|+.+|.+|+..  ..+..+....+++.|.+.-.++  +++++..|...|...+
T Consensus       176 ~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~--~~~v~~~A~~~L~~l~  250 (252)
T 4db8_A          176 VIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHE--NEKIQKEAQEALEKLQ  250 (252)
T ss_dssp             HHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHTTTTCS--SSHHHHTHHHHHHTTC
T ss_pred             HHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhCCC--CHHHHHHHHHHHHHHh
Confidence            89999999999999999999999999999999843  3455555444444444444433  5788888888776654

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24

Probab=99.49  E-value=2.2e-13  Score=120.70  Aligned_cols=129  Identities=14%  Similarity=0.164  Sum_probs=112.9

Q ss_pred             HHHHHHHHhhcCChHHHHHHHHHHhhhhccC-cccHHHhhhccChHHHHhhhc-CCcHHHHHHHHHHHHhhcCCchhhHH
Q 030369           22 YLQELVSQFQNSTDEERKEKIVANLANFAYD-PYNYTFLRQLNVLELFLDCIT-EPNEKLVEFGVGGICNASVDPANAAI   99 (178)
Q Consensus        22 ylq~LV~efq~t~~~e~keqvlanLaNfAyD-P~N~~~LrqL~vidlfld~L~-~~n~~l~EfAiggLcNL~~D~~nk~~   99 (178)
                      -+..||.-.+ +++.+.++.++..|.|.+++ |.|+..+.+.|+|+.|+.+|. ++++.+.|.|+++|+|||.++.+|..
T Consensus        45 ~i~~Lv~lL~-s~~~~~~~~A~~aL~nLa~~~~~~k~~i~~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~~~~~~~  123 (457)
T 1xm9_A           45 GICKLVDLLR-SPNQNVQQAAAGALRNLVFRSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEE  123 (457)
T ss_dssp             HHHHHHHHTT-SSCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSSSTHHH
T ss_pred             CHHHHHHHHc-CCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcCHHhHHH
Confidence            4667887666 57889999999999999987 999999999999999999999 77999999999999999999999999


Q ss_pred             hhhcCChhHHHHhhc--------C--------CchhHHHHHHHHHHHhcCC-ccccccc-----chHHHHHHHHh
Q 030369          100 ITKSGGIPLIIECLS--------S--------PVRNTVNHALGALYYLCSM-STKEEIL-----KPEVVDVIRRY  152 (178)
Q Consensus       100 I~~~gGi~~li~lLs--------S--------~~~evv~~AlttL~~L~~~-~sr~~I~-----~p~ll~ll~~~  152 (178)
                      |.+ ||||.|+++|.        +        .+++++.+|..+|.+|+.. +.|..+.     .|+|+++|+..
T Consensus       124 i~~-g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~v~~~a~~aL~nLs~~~~~~~~i~~~~g~i~~Lv~lL~~~  197 (457)
T 1xm9_A          124 LIA-DALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNC  197 (457)
T ss_dssp             HHH-HHHHHHHHHTTHHHHTCC---------CCCHHHHHHHHHHHHHHTTSHHHHHHHTTSTTHHHHHHHHHHHH
T ss_pred             HHh-ccHHHHHHHHhccccccccCccchhcccccHHHHHHHHHHHHHHccCHHHHHHHHHcCCCHHHHHHHHHhh
Confidence            999 99999999992        3        2567888999999999976 4666666     38888888753

>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}

Probab=99.49  E-value=1.5e-13  Score=114.94  Aligned_cols=130  Identities=15%  Similarity=0.168  Sum_probs=111.9

Q ss_pred             HHHHHHHhhcCChHHHHHHHHHHhhhhcc-CcccHHHhhhccChHHHHhhhc-CCcHHHHHHHHHHHHhhcCCchhhHHh
Q 030369           23 LQELVSQFQNSTDEERKEKIVANLANFAY-DPYNYTFLRQLNVLELFLDCIT-EPNEKLVEFGVGGICNASVDPANAAII  100 (178)
Q Consensus        23 lq~LV~efq~t~~~e~keqvlanLaNfAy-DP~N~~~LrqL~vidlfld~L~-~~n~~l~EfAiggLcNL~~D~~nk~~I  100 (178)
                      +..||.-.. +++.+.|++++..|.|.++ ++.|+..+.+.|+|++++..|. .++..++|.|++.||||+..+.+|..|
T Consensus        54 Ip~LV~lL~-s~~~~vq~~Aa~aL~nLa~~~~~nk~~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~~~~k~~i  132 (233)
T 3tt9_A           54 ILKLLQLLK-VQNEDVQRAVCGALRNLVFEDNDNKLEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDKLKNLM  132 (233)
T ss_dssp             HHHHHHGGG-CCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSGGGHHHH
T ss_pred             HHHHHHHHc-CCCHHHHHHHHHHHHHHHhCCHHHHHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcChhhHHHH
Confidence            566777664 5789999999999999998 5999999999999999999997 578899999999999999999999999


Q ss_pred             hhcCChhHHHHhhc----------------CCchhHHHHHHHHHHHhcC-C-ccccccc-----chHHHHHHHHhhh
Q 030369          101 TKSGGIPLIIECLS----------------SPVRNTVNHALGALYYLCS-M-STKEEIL-----KPEVVDVIRRYAA  154 (178)
Q Consensus       101 ~~~gGi~~li~lLs----------------S~~~evv~~AlttL~~L~~-~-~sr~~I~-----~p~ll~ll~~~~~  154 (178)
                      .+ +|||+|++++.                +.++++..+|..+|.+|.. + +.|..+.     +|+|+.+++..-.
T Consensus       133 ~~-~~i~~Lv~ll~~p~sG~~~~~~~~~~~~~~~~v~~na~~~L~nLss~~~~~R~~~r~~~Gli~~Lv~~l~~~~~  208 (233)
T 3tt9_A          133 IT-EALLTLTENIIIPFSGWPEGDYPKANGLLDFDIFYNVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRGTIA  208 (233)
T ss_dssp             HH-HHHHHHCCCCCHHHHCCCGGGCCCCCTTCCHHHHHHHHHHHHHHTTSCHHHHHHHHTSTTHHHHHHHHHHHHHH
T ss_pred             Hh-ccHHHHHHHHhccccCCcccccccccccchHHHHHHHHHHHHHHhcCCHHHHHHHHHCCCcHHHHHHHHHhhhh
Confidence            97 58999998763                2367999999999999986 3 5899887     4788888876543

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A

Probab=99.45  E-value=3.5e-13  Score=117.81  Aligned_cols=146  Identities=16%  Similarity=0.206  Sum_probs=121.7

Q ss_pred             HHHHHHHhhcCChHHHHHHHHHHhhhhcc-CcccHHHhh-hccChHHHHhhhcCCcH----HHHHHHHHHHHhhcC----
Q 030369           23 LQELVSQFQNSTDEERKEKIVANLANFAY-DPYNYTFLR-QLNVLELFLDCITEPNE----KLVEFGVGGICNASV----   92 (178)
Q Consensus        23 lq~LV~efq~t~~~e~keqvlanLaNfAy-DP~N~~~Lr-qL~vidlfld~L~~~n~----~l~EfAiggLcNL~~----   92 (178)
                      +..||.-...+++.+.++.++..|+|.++ ++.|+..+. ..|+|+.++..|..+++    .+++.|+++|.|+|.    
T Consensus       172 Ip~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~~nk~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~  251 (354)
T 3nmw_A          172 VKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIAT  251 (354)
T ss_dssp             HHHHHHHHHHCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHHHccChhhhHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccC
Confidence            45677766677789999999999999998 789999888 79999999999997654    599999999999995    


Q ss_pred             CchhhHHhhhcCChhHHHHhhcCCchhHHHHHHHHHHHhcC-C-ccccccc----chHHHHHHHHhhhhcccchhHHHhH
Q 030369           93 DPANAAIITKSGGIPLIIECLSSPVRNTVNHALGALYYLCS-M-STKEEIL----KPEVVDVIRRYAAAESVNVSFSNLA  166 (178)
Q Consensus        93 D~~nk~~I~~~gGi~~li~lLsS~~~evv~~AlttL~~L~~-~-~sr~~I~----~p~ll~ll~~~~~~~~~~~~~~nla  166 (178)
                      ++.+++.|.+.||||+|+++|.+++.+++.+|..+|.+|+. + +.+..|.    .|+|+++|+.    +  +.+++.-|
T Consensus       252 ~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~i~~Lv~LL~s----~--~~~i~~~A  325 (354)
T 3nmw_A          252 NEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHS----K--HKMIAMGS  325 (354)
T ss_dssp             CHHHHHHHHTTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTHHHHHHTTTTC----S--SHHHHHHH
T ss_pred             CHHHHHHHHHcCCHHHHHHHHcCCChHHHHHHHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHhC----C--CHHHHHHH
Confidence            89999999999999999999999999999999999999994 3 5676676    4888887742    2  35666666


Q ss_pred             HHHHHhhc
Q 030369          167 KAFLDKHV  174 (178)
Q Consensus       167 ~~fL~~~~  174 (178)
                      ..-|..-+
T Consensus       326 ~~aL~nL~  333 (354)
T 3nmw_A          326 AAALRNLM  333 (354)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            66555443

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A

Probab=99.41  E-value=1.5e-12  Score=121.60  Aligned_cols=128  Identities=13%  Similarity=0.172  Sum_probs=111.5

Q ss_pred             HHHHHHHhhcCChHHHHHHHHHHhhhhcc--CcccHHHhhhccChHHHHhhhcC-CcHHHHHHHHHHHHhhcCCchhhHH
Q 030369           23 LQELVSQFQNSTDEERKEKIVANLANFAY--DPYNYTFLRQLNVLELFLDCITE-PNEKLVEFGVGGICNASVDPANAAI   99 (178)
Q Consensus        23 lq~LV~efq~t~~~e~keqvlanLaNfAy--DP~N~~~LrqL~vidlfld~L~~-~n~~l~EfAiggLcNL~~D~~nk~~   99 (178)
                      +..||.-.. +++.+.|++++..|.|.|+  |+.|+..+++.|+|+.++..|.+ .+..++|.|+++|+||+.++.+|..
T Consensus        92 Ip~LV~LL~-s~~~~vq~~Aa~AL~nLa~~~~~~nk~~I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~~~~~k~~  170 (584)
T 3l6x_A           92 IPVLVGLLD-HPKKEVHLGACGALKNISFGRDQDNKIAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSHDSIKME  170 (584)
T ss_dssp             HHHHHHGGG-CSSHHHHHHHHHHHHHHTSSSCHHHHHHHHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTTSGGGHHH
T ss_pred             cHHHHHHHC-CCCHHHHHHHHHHHHHHHccCCHHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhhHH
Confidence            456777664 5689999999999999998  49999999999999999999996 5788999999999999999999999


Q ss_pred             hhhcCChhHHHHhhc------------------CCchhHHHHHHHHHHHhcCC--ccccccc-----chHHHHHHHHh
Q 030369          100 ITKSGGIPLIIECLS------------------SPVRNTVNHALGALYYLCSM--STKEEIL-----KPEVVDVIRRY  152 (178)
Q Consensus       100 I~~~gGi~~li~lLs------------------S~~~evv~~AlttL~~L~~~--~sr~~I~-----~p~ll~ll~~~  152 (178)
                      |.+ ||||+|+++|.                  +++++++.+|..+|.+|+..  ..|..|.     .|+|+.+|+..
T Consensus       171 I~~-~alp~Lv~LL~~p~sg~~~~~~~~~k~~~~~d~~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~L~~~  247 (584)
T 3l6x_A          171 IVD-HALHALTDEVIIPHSGWEREPNEDCKPRHIEWESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAE  247 (584)
T ss_dssp             HHH-HTHHHHHHHTHHHHHCCC----------CCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHHHHHHHH
T ss_pred             HHh-ccHHHHHHHHhcccccccccccccccccccccHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHHHHHHHh
Confidence            996 68999999872                  34689999999999999965  3588777     37899998864

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A

Probab=99.37  E-value=4.3e-12  Score=110.90  Aligned_cols=127  Identities=18%  Similarity=0.312  Sum_probs=110.0

Q ss_pred             HHHHHHHhhcCChHHHHHHHHHHhhhhcc--CcccHHHhhhccChHHHHhhh-cCCcHHHHHHHHHHHHhhcC-CchhhH
Q 030369           23 LQELVSQFQNSTDEERKEKIVANLANFAY--DPYNYTFLRQLNVLELFLDCI-TEPNEKLVEFGVGGICNASV-DPANAA   98 (178)
Q Consensus        23 lq~LV~efq~t~~~e~keqvlanLaNfAy--DP~N~~~LrqL~vidlfld~L-~~~n~~l~EfAiggLcNL~~-D~~nk~   98 (178)
                      +..||.-.+ +++.+.|+++...|.|.++  |+.|+..+.+.|+|+.+++.| ..+++.+++.|+++|+||+. ++.+|.
T Consensus       129 Ip~LV~LL~-s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~~nk~  207 (354)
T 3nmw_A          129 MRALVAQLK-SESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKA  207 (354)
T ss_dssp             HHHHHHGGG-CSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHC-CCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHHHHHhcCCCHHHHHHHHHHHHHHHccChhhhH
Confidence            667887665 6789999999999999998  489999999999999999985 56788999999999999998 778999


Q ss_pred             Hhh-hcCChhHHHHhhcCCch----hHHHHHHHHHHHhcC-----Cccccccc----chHHHHHHH
Q 030369           99 IIT-KSGGIPLIIECLSSPVR----NTVNHALGALYYLCS-----MSTKEEIL----KPEVVDVIR  150 (178)
Q Consensus        99 ~I~-~~gGi~~li~lLsS~~~----evv~~AlttL~~L~~-----~~sr~~I~----~p~ll~ll~  150 (178)
                      .|. +.||||.|+++|+++++    +++.+|..+|.+|+.     ++.|..|.    .|+++++|+
T Consensus       208 ~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g~i~~Lv~lL~  273 (354)
T 3nmw_A          208 DICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLK  273 (354)
T ss_dssp             HHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHTT
T ss_pred             HHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHcCCHHHHHHHHc
Confidence            998 79999999999977654    589999999999983     35676666    499999886

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}

Probab=99.37  E-value=2e-12  Score=117.07  Aligned_cols=147  Identities=16%  Similarity=0.209  Sum_probs=123.5

Q ss_pred             HHHHHHHhhcCChHHHHHHHHHHhhhhcc-CcccHHHhh-hccChHHHHhhhcCCcH----HHHHHHHHHHHhhcC----
Q 030369           23 LQELVSQFQNSTDEERKEKIVANLANFAY-DPYNYTFLR-QLNVLELFLDCITEPNE----KLVEFGVGGICNASV----   92 (178)
Q Consensus        23 lq~LV~efq~t~~~e~keqvlanLaNfAy-DP~N~~~Lr-qL~vidlfld~L~~~n~----~l~EfAiggLcNL~~----   92 (178)
                      +..||.-...+++.+.++.++..|+|.+. ++.|+..+. +.|+|+.++..|..+++    .+++.|+++|.|++.    
T Consensus       288 I~~LV~lLl~s~~~~v~~~A~~aL~nLs~~~~~nk~~I~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~  367 (458)
T 3nmz_A          288 VKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIAT  367 (458)
T ss_dssp             HHHHHHHHTTCCSHHHHHHHHHHHHHHHHHCHHHHHHHHHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccC
Confidence            45677766677789999999999999998 889999998 79999999999997654    499999999999994    


Q ss_pred             CchhhHHhhhcCChhHHHHhhcCCchhHHHHHHHHHHHhcC-C-ccccccc----chHHHHHHHHhhhhcccchhHHHhH
Q 030369           93 DPANAAIITKSGGIPLIIECLSSPVRNTVNHALGALYYLCS-M-STKEEIL----KPEVVDVIRRYAAAESVNVSFSNLA  166 (178)
Q Consensus        93 D~~nk~~I~~~gGi~~li~lLsS~~~evv~~AlttL~~L~~-~-~sr~~I~----~p~ll~ll~~~~~~~~~~~~~~nla  166 (178)
                      ++.+++.|.+.||||+|+++|++++.+++.+|..+|.+|+. + +.+..|.    .|+|+++|+    ++  +.+++.-|
T Consensus       368 ~~~~~~~i~~~G~i~~Lv~LL~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~I~~Lv~LL~----s~--~~~v~~~A  441 (458)
T 3nmz_A          368 NEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIH----SK--HKMIAMGS  441 (458)
T ss_dssp             CHHHHHHHHHTTHHHHHHHHSSCSCHHHHHHHHHHHHHHHSSCHHHHHHHHHHTHHHHHHTTTT----CS--SHHHHHHH
T ss_pred             CHHHHHHHHHcccHHHHHHHHcCCChHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHh----CC--CHHHHHHH
Confidence            89999999999999999999999999999999999999993 3 5677676    488888873    22  45777777


Q ss_pred             HHHHHhhcc
Q 030369          167 KAFLDKHVT  175 (178)
Q Consensus       167 ~~fL~~~~~  175 (178)
                      ..-|..-++
T Consensus       442 a~AL~nL~~  450 (458)
T 3nmz_A          442 AAALRNLMA  450 (458)
T ss_dssp             HHHHHHHHT
T ss_pred             HHHHHHHHc
Confidence            776665544

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A

Probab=99.30  E-value=1.2e-11  Score=107.19  Aligned_cols=148  Identities=22%  Similarity=0.248  Sum_probs=123.2

Q ss_pred             HHHHHHHhhcCChHHHHHHHHHHhhhhccCcccHHHhhhccChHHHHhhhcCCc----------------------HHHH
Q 030369           23 LQELVSQFQNSTDEERKEKIVANLANFAYDPYNYTFLRQLNVLELFLDCITEPN----------------------EKLV   80 (178)
Q Consensus        23 lq~LV~efq~t~~~e~keqvlanLaNfAyDP~N~~~LrqL~vidlfld~L~~~n----------------------~~l~   80 (178)
                      +..|+.-.+..++.+.++.++..|.|++.+|.|...+.+.++++.+++.|..++                      +.++
T Consensus       357 i~~L~~lL~~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~l~n~~~~~~~~~~~i~  436 (529)
T 1jdh_A          357 LPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIV  436 (529)
T ss_dssp             HHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGGGHHHHHHTTHHHHHHHHHHHHHHHHC-----------CBTTBCHHHHH
T ss_pred             hhHHHHHhccccchHHHHHHHHHHHHHhcChhhhHHHHHcCCHHHHHHHHHHHhHHHHHHHhcccCchhhhccccHHHHH
Confidence            566777666666678999999999999999999999999999999999997543                      3455


Q ss_pred             HHHHHHHHhhcCCchhhHHhhhcCChhHHHHhhcCCchhHHHHHHHHHHHhcCC-cccccccchHHHHHHHHhhhhcccc
Q 030369           81 EFGVGGICNASVDPANAAIITKSGGIPLIIECLSSPVRNTVNHALGALYYLCSM-STKEEILKPEVVDVIRRYAAAESVN  159 (178)
Q Consensus        81 EfAiggLcNL~~D~~nk~~I~~~gGi~~li~lLsS~~~evv~~AlttL~~L~~~-~sr~~I~~p~ll~ll~~~~~~~~~~  159 (178)
                      +.++++||+|+.++.++..|.+.|+++.++++|.++++++...|..+|.+|..+ ..+..|.....++.|.+...++  |
T Consensus       437 ~~~~~al~~L~~~~~~~~~l~~~~~v~~l~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~i~~~~~~~~L~~l~~~~--~  514 (529)
T 1jdh_A          437 EGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATAPLTELLHSR--N  514 (529)
T ss_dssp             HHHHHHHHHHTTSHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSHHHHHHHHHTTCHHHHHHGGGCS--S
T ss_pred             HHHHHHHHHHhcCchHHHHHhccCCccHHHHHHcCCchHHHHHHHHHHHHHhcCHHHHHHHHHcCChHHHHHHhcCC--C
Confidence            688899999999999999999999999999999999999999999999999866 3455565555556666666655  6


Q ss_pred             hhHHHhHHHHHHh
Q 030369          160 VSFSNLAKAFLDK  172 (178)
Q Consensus       160 ~~~~nla~~fL~~  172 (178)
                      +.++..|..-|++
T Consensus       515 ~~v~~~a~~aL~~  527 (529)
T 1jdh_A          515 EGVATYAAAVLFR  527 (529)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHh
Confidence            8898888887764

>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B

Probab=99.30  E-value=5.5e-12  Score=112.88  Aligned_cols=143  Identities=13%  Similarity=0.136  Sum_probs=120.2

Q ss_pred             cCChHHHHHHHHHHhhhhcc-CcccHHHhhhccChHHHHhhhcCCcHHHHHHHHHHHHhhcC--CchhhHHhhhcCChhH
Q 030369           32 NSTDEERKEKIVANLANFAY-DPYNYTFLRQLNVLELFLDCITEPNEKLVEFGVGGICNASV--DPANAAIITKSGGIPL  108 (178)
Q Consensus        32 ~t~~~e~keqvlanLaNfAy-DP~N~~~LrqL~vidlfld~L~~~n~~l~EfAiggLcNL~~--D~~nk~~I~~~gGi~~  108 (178)
                      .+++.+.|+.+...|+|.+. ++.+...+.+.|+++.++.+|..++..+++.|+.+|+|++.  ++....++.+.|+|++
T Consensus       345 ~~~~~~i~~~a~~aL~nl~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nl~~~~~~~~~~~l~~~g~i~~  424 (529)
T 3tpo_A          345 TNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKAAAWAITNYTSGGTVEQIVYLVHCGIIEP  424 (529)
T ss_dssp             TCSSHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHH
T ss_pred             cCCCHHHHHHHHHHHHHHhcccHHHHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCcCHHH
Confidence            35688899999999999985 78888999999999999999999999999999999999985  6788889999999999


Q ss_pred             HHHhhcCCchhHHHHHHHHHHHhcCCc----cccc----ccchHHHHHHHHhhhhcccchhHHHhHHHHHHhhccC
Q 030369          109 IIECLSSPVRNTVNHALGALYYLCSMS----TKEE----ILKPEVVDVIRRYAAAESVNVSFSNLAKAFLDKHVTE  176 (178)
Q Consensus       109 li~lLsS~~~evv~~AlttL~~L~~~~----sr~~----I~~p~ll~ll~~~~~~~~~~~~~~nla~~fL~~~~~~  176 (178)
                      |+++|+++|++++..++.+|.+++.-.    ....    |..--.++.|+.++.|+  |..|..+|.-+||+|.+.
T Consensus       425 L~~LL~~~d~~i~~~~L~aL~nil~~~~~~~~~~~~~~~iee~ggl~~ie~Lq~~~--n~~i~~~A~~iie~yf~~  498 (529)
T 3tpo_A          425 LMNLLSAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQRHE--NESVYKASLNLIEKYFSV  498 (529)
T ss_dssp             HHHGGGCSCHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHTGGGGCS--SHHHHHHHHHHHHHHC--
T ss_pred             HHHHhcCCCHHHHHHHHHHHHHHHHHhHhccChHHHHHHHHHCCcHHHHHHHHcCC--CHHHHHHHHHHHHHHCCC
Confidence            999999999999999999999987431    1111    11223467777887766  789999999999999864

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*

Probab=99.30  E-value=1.4e-11  Score=105.47  Aligned_cols=147  Identities=14%  Similarity=0.119  Sum_probs=119.5

Q ss_pred             HHHHHHHHHHhhc-----------CChHHHHHHHHHHhhhhccCcccHHHhhhccChHHHHh-hhcCCcHHHHHHHHHHH
Q 030369           20 LQYLQELVSQFQN-----------STDEERKEKIVANLANFAYDPYNYTFLRQLNVLELFLD-CITEPNEKLVEFGVGGI   87 (178)
Q Consensus        20 ~~ylq~LV~efq~-----------t~~~e~keqvlanLaNfAyDP~N~~~LrqL~vidlfld-~L~~~n~~l~EfAiggL   87 (178)
                      .+.++..+.-+++           +.+.|.|+.++.+|+++..++.|...+.++|+++.++. +|.++++.+++.|+.+|
T Consensus        27 ~~~mk~~l~vl~~~~~~~~~~~~~~~~~e~k~~Al~~L~~lv~~~dna~~~~~~G~l~~Lv~~lL~s~~~~vr~~Aa~~L  106 (296)
T 1xqr_A           27 VEQMKSCLRVLSQPMPPTAGEAEQAADQQEREGALELLADLCENMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLI  106 (296)
T ss_dssp             HHHHHHHHHHHHSCCCSSCCHHHHHHHHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCCcccccccccCCCHHHHHHHHHHHHHHHhChhhHHHHHHcCCHHHHHHHHHcCCCHHHHHHHHHHH
Confidence            4556666666665           34568899999999999999999999999999999999 99999999999999999


Q ss_pred             HhhcC-CchhhHHhhhcCChhHHHHhhcC-CchhHHHHHHHHHHHhcCC--ccccccc----chHHHHHHHHhhhhcccc
Q 030369           88 CNASV-DPANAAIITKSGGIPLIIECLSS-PVRNTVNHALGALYYLCSM--STKEEIL----KPEVVDVIRRYAAAESVN  159 (178)
Q Consensus        88 cNL~~-D~~nk~~I~~~gGi~~li~lLsS-~~~evv~~AlttL~~L~~~--~sr~~I~----~p~ll~ll~~~~~~~~~~  159 (178)
                      +|++- +|.++..|++.||+|+|+++|++ +++++...|+.+|.+++..  .....+.    .|+|+++|+.    +  +
T Consensus       107 g~ia~~n~~~~~~vv~~g~l~~Ll~LL~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~----~--d  180 (296)
T 1xqr_A          107 GTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQ----Q--V  180 (296)
T ss_dssp             HHHHTTCHHHHHHHHHTTHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHS----S--C
T ss_pred             HHHHhCCHHHHHHHHHCCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcC----C--C
Confidence            99986 48899999999999999999974 5789999999999999854  2333444    4888888852    2  3


Q ss_pred             hhHHHhHHHHHHh
Q 030369          160 VSFSNLAKAFLDK  172 (178)
Q Consensus       160 ~~~~nla~~fL~~  172 (178)
                      .++..-|...|..
T Consensus       181 ~~v~~~A~~aLs~  193 (296)
T 1xqr_A          181 QKLKVKSAFLLQN  193 (296)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            4555555555543

>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...

Probab=99.29  E-value=1.2e-11  Score=110.50  Aligned_cols=143  Identities=13%  Similarity=0.121  Sum_probs=122.4

Q ss_pred             cCChHHHHHHHHHHhhhhc-cCcccHHHhhhccChHHHHhhhcCCcHHHHHHHHHHHHhhcC--CchhhHHhhhcCChhH
Q 030369           32 NSTDEERKEKIVANLANFA-YDPYNYTFLRQLNVLELFLDCITEPNEKLVEFGVGGICNASV--DPANAAIITKSGGIPL  108 (178)
Q Consensus        32 ~t~~~e~keqvlanLaNfA-yDP~N~~~LrqL~vidlfld~L~~~n~~l~EfAiggLcNL~~--D~~nk~~I~~~gGi~~  108 (178)
                      .+++.+.|+.+...|+|++ .++.+...+.+.++++.++++|..++..+++.|+.+|+|++.  ++....++.+.|+|++
T Consensus       326 ~~~~~~v~~~A~~aL~nl~a~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~Aa~aL~Nl~~~~~~~~~~~L~~~g~i~~  405 (510)
T 3ul1_B          326 TNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEP  405 (510)
T ss_dssp             TCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCCHHHHHHHHHTTCHHH
T ss_pred             cCCCHHHHHHHHHHHHHHHcCcHHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHH
Confidence            4567889999999999998 578889999999999999999999999999999999999986  7788889999999999


Q ss_pred             HHHhhcCCchhHHHHHHHHHHHhcCCc----ccc----cccchHHHHHHHHhhhhcccchhHHHhHHHHHHhhccC
Q 030369          109 IIECLSSPVRNTVNHALGALYYLCSMS----TKE----EILKPEVVDVIRRYAAAESVNVSFSNLAKAFLDKHVTE  176 (178)
Q Consensus       109 li~lLsS~~~evv~~AlttL~~L~~~~----sr~----~I~~p~ll~ll~~~~~~~~~~~~~~nla~~fL~~~~~~  176 (178)
                      |+++|++++++++..++.+|.+++...    ...    .|..--.++.|+..+.|+  |..+.++|.-+||+|.+.
T Consensus       406 L~~LL~~~d~~i~~~~L~aL~nil~~~~~~~~~~~~~~~iee~ggl~~ie~Lq~~~--n~~i~~~A~~iie~yf~~  479 (510)
T 3ul1_B          406 LMNLLSAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQRHE--NESVYKASLNLIEKYFSV  479 (510)
T ss_dssp             HHHGGGCSCHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTHHHHHHHGGGCS--SHHHHHHHHHHHHHHCC-
T ss_pred             HHHHhcCCCHHHHHHHHHHHHHHHHHhHhccchHHHHHHHHHcCcHHHHHHHHcCC--CHHHHHHHHHHHHHHCCC
Confidence            999999999999999999999988431    111    122244577888888766  789999999999999864

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}

Probab=99.29  E-value=1.7e-11  Score=111.08  Aligned_cols=128  Identities=18%  Similarity=0.308  Sum_probs=110.6

Q ss_pred             HHHHHHHHhhcCChHHHHHHHHHHhhhhcc--CcccHHHhhhccChHHHHhhh-cCCcHHHHHHHHHHHHhhcC-Cchhh
Q 030369           22 YLQELVSQFQNSTDEERKEKIVANLANFAY--DPYNYTFLRQLNVLELFLDCI-TEPNEKLVEFGVGGICNASV-DPANA   97 (178)
Q Consensus        22 ylq~LV~efq~t~~~e~keqvlanLaNfAy--DP~N~~~LrqL~vidlfld~L-~~~n~~l~EfAiggLcNL~~-D~~nk   97 (178)
                      .+..||.-.+ +++.+.++++...|.|.++  |+.|+..+.+.|+|+.++++| ..+++.+++.|+++|+|||. ...+|
T Consensus       244 aIp~LV~LL~-s~~~~v~~~A~~aL~nLs~~~~~~~k~~I~~~GaI~~LV~lLl~s~~~~v~~~A~~aL~nLs~~~~~nk  322 (458)
T 3nmz_A          244 CMRALVAQLK-SESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENK  322 (458)
T ss_dssp             HHHHHHHGGG-CSCHHHHHHHHHHHHHHTSSCCHHHHHHHHHTTHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHCHHHH
T ss_pred             cHHHHHHHHh-CCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCHHHHHHHHhcCCCHHHHHHHHHHHHHHccCCHHHH
Confidence            3677887776 6789999999999999998  589999999999999999985 55688999999999999998 78999


Q ss_pred             HHhh-hcCChhHHHHhhcCCch----hHHHHHHHHHHHhcC-----Cccccccc----chHHHHHHH
Q 030369           98 AIIT-KSGGIPLIIECLSSPVR----NTVNHALGALYYLCS-----MSTKEEIL----KPEVVDVIR  150 (178)
Q Consensus        98 ~~I~-~~gGi~~li~lLsS~~~----evv~~AlttL~~L~~-----~~sr~~I~----~p~ll~ll~  150 (178)
                      ..|. +.||||.|+++|+++++    +++.+|..+|.+|..     +..+..|.    .|+++++|+
T Consensus       323 ~~I~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~G~i~~Lv~LL~  389 (458)
T 3nmz_A          323 ADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLK  389 (458)
T ss_dssp             HHHHHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHSS
T ss_pred             HHHHHhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHcccHHHHHHHHc
Confidence            9998 79999999999977654    489999999999983     35666665    489999885

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*

Probab=99.28  E-value=1.3e-11  Score=105.68  Aligned_cols=127  Identities=11%  Similarity=0.087  Sum_probs=108.3

Q ss_pred             HHHHHHhhcCChHHHHHHHHHHhhhhcc-CcccHHHhhhccChHHHHhhhcC-CcHHHHHHHHHHHHhhcCC-chhhHHh
Q 030369           24 QELVSQFQNSTDEERKEKIVANLANFAY-DPYNYTFLRQLNVLELFLDCITE-PNEKLVEFGVGGICNASVD-PANAAII  100 (178)
Q Consensus        24 q~LV~efq~t~~~e~keqvlanLaNfAy-DP~N~~~LrqL~vidlfld~L~~-~n~~l~EfAiggLcNL~~D-~~nk~~I  100 (178)
                      ..||..+-.+++.+.|++++..|+|.|. ||.+...+.+.|+++.++.+|++ +++.+++.|+.+|+|+|.+ +..++.|
T Consensus        84 ~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~LL~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~  163 (296)
T 1xqr_A           84 HLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLVREQEAGLLQF  163 (296)
T ss_dssp             HHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCcHHHHHH
Confidence            3466634457789999999999999996 59999999999999999999995 4889999999999999975 5667788


Q ss_pred             hhcCChhHHHHhhcCCchhHHHHHHHHHHHhcCC--ccccccc----chHHHHHHH
Q 030369          101 TKSGGIPLIIECLSSPVRNTVNHALGALYYLCSM--STKEEIL----KPEVVDVIR  150 (178)
Q Consensus       101 ~~~gGi~~li~lLsS~~~evv~~AlttL~~L~~~--~sr~~I~----~p~ll~ll~  150 (178)
                      .+.||||.|+.+|+++++.++..|..+|.+|+..  +.+..+.    .|+|+++|.
T Consensus       164 ~~~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~~~~~~~~vv~~g~i~~Lv~LL~  219 (296)
T 1xqr_A          164 LRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQLVALVR  219 (296)
T ss_dssp             HHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHTTHHHHHHHHHT
T ss_pred             HHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCChHHHHHHHHcCCHHHHHHHHc
Confidence            8899999999999999999999999999999843  3445554    488888874

>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A

Probab=99.28  E-value=5.2e-11  Score=104.89  Aligned_cols=127  Identities=14%  Similarity=0.175  Sum_probs=108.6

Q ss_pred             HHHHHHHhhcCChHHHHHHHHHHhhhhccC-cccHHHhhhccChHHHHhhhcCCcHHHHHHHHHHHHhhcCC-chhhHHh
Q 030369           23 LQELVSQFQNSTDEERKEKIVANLANFAYD-PYNYTFLRQLNVLELFLDCITEPNEKLVEFGVGGICNASVD-PANAAII  100 (178)
Q Consensus        23 lq~LV~efq~t~~~e~keqvlanLaNfAyD-P~N~~~LrqL~vidlfld~L~~~n~~l~EfAiggLcNL~~D-~~nk~~I  100 (178)
                      +..||.-.+..++.+.|++++..|.|++.+ |.+...+.+.++++.++..|..+++.+++.|+.+|+|+|.| +.++..+
T Consensus       119 v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~i  198 (528)
T 4b8j_A          119 VPRFVQFLTREDFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCRDLV  198 (528)
T ss_dssp             HHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred             HHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCChhhHHHH
Confidence            456777666665689999999999999986 99999999999999999999999999999999999999977 7789999


Q ss_pred             hhcCChhHHHHhh-cCCchhHHHHHHHHHHHhcCCc-cccccc----chHHHHHH
Q 030369          101 TKSGGIPLIIECL-SSPVRNTVNHALGALYYLCSMS-TKEEIL----KPEVVDVI  149 (178)
Q Consensus       101 ~~~gGi~~li~lL-sS~~~evv~~AlttL~~L~~~~-sr~~I~----~p~ll~ll  149 (178)
                      .+.|+++.|+++| .++++++..+|+.+|.+|+... ......    .|.++++|
T Consensus       199 ~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~lL  253 (528)
T 4b8j_A          199 LANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGKPQPSFEQTRPALPALARLI  253 (528)
T ss_dssp             HHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCSSSCCCHHHHTTHHHHHHHHT
T ss_pred             HHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHH
Confidence            9999999999999 7778999999999999999762 222222    36666655

>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...

Probab=99.26  E-value=1.2e-10  Score=104.21  Aligned_cols=127  Identities=17%  Similarity=0.210  Sum_probs=106.9

Q ss_pred             HHHHHHHhhcCChHHHHHHHHHHhhhhc-cCcccHHHhhhccChHHHHhhhcCCcHHHHHHHHHHHHhhcCC-chhhHHh
Q 030369           23 LQELVSQFQNSTDEERKEKIVANLANFA-YDPYNYTFLRQLNVLELFLDCITEPNEKLVEFGVGGICNASVD-PANAAII  100 (178)
Q Consensus        23 lq~LV~efq~t~~~e~keqvlanLaNfA-yDP~N~~~LrqL~vidlfld~L~~~n~~l~EfAiggLcNL~~D-~~nk~~I  100 (178)
                      +..||.-.+.+++.+.|..+...|+|.| .+|.|...+.+.|+|+.|+.+|.++++.++|.|+.+|+|++.| +.++..|
T Consensus       102 ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~~e~~~~vv~~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d~~~~r~~v  181 (510)
T 3ul1_B          102 IPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLV  181 (510)
T ss_dssp             HHHHHHHTTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHH
Confidence            4457877888888999999999999998 5799999999999999999999999999999999999999987 8889999


Q ss_pred             hhcCChhHHHHhhcCCchh-----HHHHHHHHHHHhcCCc-cccccc-----chHHHHHH
Q 030369          101 TKSGGIPLIIECLSSPVRN-----TVNHALGALYYLCSMS-TKEEIL-----KPEVVDVI  149 (178)
Q Consensus       101 ~~~gGi~~li~lLsS~~~e-----vv~~AlttL~~L~~~~-sr~~I~-----~p~ll~ll  149 (178)
                      .+.||+++++.+|++++.+     ++.++..++.+++... ....+.     .|.|+++|
T Consensus       182 ~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL  241 (510)
T 3ul1_B          182 IKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLL  241 (510)
T ss_dssp             HHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHHCCCSSCCCHHHHHHHHHHHHHHT
T ss_pred             HHcCChHHHHHHHHhccchhhhHHHHHHHHHHHHHHhhcccchhHHHHHHhHHHHHHHHH
Confidence            9999999999999877643     5678888999998652 333332     35555555

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A

Probab=99.26  E-value=1.8e-11  Score=106.12  Aligned_cols=132  Identities=16%  Similarity=0.250  Sum_probs=116.8

Q ss_pred             HHHHHHHHHhhcCChHHHHHHHHHHhhhhccCcccHHHhhhccChHHHHhhhcCCcHHHHHHHHHHHHhhcCC-chhhHH
Q 030369           21 QYLQELVSQFQNSTDEERKEKIVANLANFAYDPYNYTFLRQLNVLELFLDCITEPNEKLVEFGVGGICNASVD-PANAAI   99 (178)
Q Consensus        21 ~ylq~LV~efq~t~~~e~keqvlanLaNfAyDP~N~~~LrqL~vidlfld~L~~~n~~l~EfAiggLcNL~~D-~~nk~~   99 (178)
                      ..+..||.-.+.+++.+.++.++..|.|++.+|.|...+.+.|+++.++..|..+++.+++.|+.+|+|+|.+ +..+..
T Consensus        59 ~~i~~Lv~~L~~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~  138 (529)
T 1jdh_A           59 QMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMA  138 (529)
T ss_dssp             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHH
T ss_pred             chHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCchhHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcchHHH
Confidence            5788888888877789999999999999999999999999999999999999999999999999999999987 677888


Q ss_pred             hhhcCChhHHHHhhcCCchhHHHHHHHHHHHhcC--Cccccccc----chHHHHHHHHh
Q 030369          100 ITKSGGIPLIIECLSSPVRNTVNHALGALYYLCS--MSTKEEIL----KPEVVDVIRRY  152 (178)
Q Consensus       100 I~~~gGi~~li~lLsS~~~evv~~AlttL~~L~~--~~sr~~I~----~p~ll~ll~~~  152 (178)
                      +.+.|++|.++++|.++++++...+..+|.+|..  ++.+..+.    .|+++++|+..
T Consensus       139 i~~~g~i~~L~~ll~~~~~~~~~~~~~~L~~la~~~~~~~~~i~~~~~i~~L~~ll~~~  197 (529)
T 1jdh_A          139 VRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTY  197 (529)
T ss_dssp             HHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHC
T ss_pred             HHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHhC
Confidence            8899999999999999999998888889988874  34565555    48888888754

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}

Probab=99.21  E-value=9e-11  Score=107.00  Aligned_cols=149  Identities=22%  Similarity=0.230  Sum_probs=122.1

Q ss_pred             HHHHHHHHhhcCChHHHHHHHHHHhhhhccCcccHHHhhhccChHHHHhhhcCC----------------------cHHH
Q 030369           22 YLQELVSQFQNSTDEERKEKIVANLANFAYDPYNYTFLRQLNVLELFLDCITEP----------------------NEKL   79 (178)
Q Consensus        22 ylq~LV~efq~t~~~e~keqvlanLaNfAyDP~N~~~LrqL~vidlfld~L~~~----------------------n~~l   79 (178)
                      .+..|+.-.+..++.+.++.++..|+|++.+|.|...+.+.++++.+++.|..+                      ++.+
T Consensus       353 ~l~~L~~lL~~~~~~~v~~~a~~~L~nLa~~~~~~~~i~~~~~i~~Lv~lL~~~~~~vr~~a~~al~n~~~~~~~~~~~v  432 (644)
T 2z6h_A          353 GLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEI  432 (644)
T ss_dssp             HHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGGGHHHHHHTTHHHHHHHHHHHHHHHHTTC----------CCSSCHHHH
T ss_pred             ChHHHHHHhCccCchHHHHHHHHHHHHHccCHHHHHHHHHcCCHHHHHHHHhccchhhhhHhhhccccchhcccccHHHH
Confidence            467777777776667899999999999999999999999999999999999753                      4678


Q ss_pred             HHHHHHHHHhhcCCchhhHHhhhcCChhHHHHhhcCCchhHHHHHHHHHHHhcCC-cccccccchHHHHHHHHhhhhccc
Q 030369           80 VEFGVGGICNASVDPANAAIITKSGGIPLIIECLSSPVRNTVNHALGALYYLCSM-STKEEILKPEVVDVIRRYAAAESV  158 (178)
Q Consensus        80 ~EfAiggLcNL~~D~~nk~~I~~~gGi~~li~lLsS~~~evv~~AlttL~~L~~~-~sr~~I~~p~ll~ll~~~~~~~~~  158 (178)
                      ++.|.++|+||+.++.++..|.+.|+|++|+++|.+++++++..|..+|.+|..+ +.+..|...-.++.|.+...++  
T Consensus       433 ~~~a~~aL~~La~~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~i~~~g~l~~L~~ll~~~--  510 (644)
T 2z6h_A          433 VEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATAPLTELLHSR--  510 (644)
T ss_dssp             HHHHHHHHHHHTTSHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSHHHHHHHHHTTCHHHHHHHTTCS--
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHhCCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCHHHHHHHHHcCChhHHHHHHcCC--
Confidence            8999999999999999999999999999999999999999999999999999866 3455555333344444444544  


Q ss_pred             chhHHHhHHHHHHh
Q 030369          159 NVSFSNLAKAFLDK  172 (178)
Q Consensus       159 ~~~~~nla~~fL~~  172 (178)
                      |+.++..|..-|..
T Consensus       511 ~~~vr~~A~~aL~~  524 (644)
T 2z6h_A          511 NEGVATYAAAVLFR  524 (644)
T ss_dssp             CHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHH
Confidence            67787777666644

>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B

Probab=99.20  E-value=2.9e-10  Score=101.72  Aligned_cols=127  Identities=17%  Similarity=0.203  Sum_probs=106.9

Q ss_pred             HHHHHHHhhcCChHHHHHHHHHHhhhhcc-CcccHHHhhhccChHHHHhhhcCCcHHHHHHHHHHHHhhcCC-chhhHHh
Q 030369           23 LQELVSQFQNSTDEERKEKIVANLANFAY-DPYNYTFLRQLNVLELFLDCITEPNEKLVEFGVGGICNASVD-PANAAII  100 (178)
Q Consensus        23 lq~LV~efq~t~~~e~keqvlanLaNfAy-DP~N~~~LrqL~vidlfld~L~~~n~~l~EfAiggLcNL~~D-~~nk~~I  100 (178)
                      +..||.-.+.+++.+.|..++..|+|+|. ++.+...+.+.|+|+.|+.+|.++++.++|.|+.+|+|++.| +.++..|
T Consensus       121 ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~~~~~~~vv~~Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~~~~~~r~~i  200 (529)
T 3tpo_A          121 IPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGAGSAFRDLV  200 (529)
T ss_dssp             HHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhccCHHHHHHH
Confidence            45688888888889999999999999994 688999999999999999999999999999999999999986 8999999


Q ss_pred             hhcCChhHHHHhhcCCch-----hHHHHHHHHHHHhcCC-ccccccc-----chHHHHHH
Q 030369          101 TKSGGIPLIIECLSSPVR-----NTVNHALGALYYLCSM-STKEEIL-----KPEVVDVI  149 (178)
Q Consensus       101 ~~~gGi~~li~lLsS~~~-----evv~~AlttL~~L~~~-~sr~~I~-----~p~ll~ll  149 (178)
                      .+.||+++++.+|++++.     .++.++..++.+++.. .....+.     .|.|+++|
T Consensus       201 ~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL  260 (529)
T 3tpo_A          201 IKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLL  260 (529)
T ss_dssp             HHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHHHHHHCCCTTCCCHHHHHHHHHHHHHHT
T ss_pred             HHcCCcHHHHHHHhccchhHhHHHHHHHHHHHHHHHHhcccchhhHHHHhhHHHHHHHHh
Confidence            999999999999977653     3567888899999865 2233222     36666655

>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A

Probab=99.20  E-value=7.7e-11  Score=103.79  Aligned_cols=152  Identities=14%  Similarity=0.156  Sum_probs=126.0

Q ss_pred             HHHHHHHhhcCChHHHHHHHHHHhhhhcc-CcccHHHhhhccChHHHHhhhcCCcHHHHHHHHHHHHhhcC--CchhhHH
Q 030369           23 LQELVSQFQNSTDEERKEKIVANLANFAY-DPYNYTFLRQLNVLELFLDCITEPNEKLVEFGVGGICNASV--DPANAAI   99 (178)
Q Consensus        23 lq~LV~efq~t~~~e~keqvlanLaNfAy-DP~N~~~LrqL~vidlfld~L~~~n~~l~EfAiggLcNL~~--D~~nk~~   99 (178)
                      +..|+.-.+...+.+.++.+...|.|++. ++.....+.+.++++.+++.|..+++.+++.|+.+|+|++.  ++....+
T Consensus       330 l~~L~~lL~~~~~~~v~~~A~~~L~nl~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~  409 (528)
T 4b8j_A          330 LPCLLSLLTQNLKKSIKKEACWTISNITAGNKDQIQAVINAGIIGPLVNLLQTAEFDIKKEAAWAISNATSGGSHDQIKY  409 (528)
T ss_dssp             HHHHHHHHHSCCCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSCHHHHHH
T ss_pred             HHHHHHHHcCCCcHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHcCCCHHHHHH
Confidence            45566655555488999999999999994 68888899999999999999999999999999999999986  4899999


Q ss_pred             hhhcCChhHHHHhhcCCchhHHHHHHHHHHHhcCCc-c------------cccccchHHHHHHHHhhhhcccchhHHHhH
Q 030369          100 ITKSGGIPLIIECLSSPVRNTVNHALGALYYLCSMS-T------------KEEILKPEVVDVIRRYAAAESVNVSFSNLA  166 (178)
Q Consensus       100 I~~~gGi~~li~lLsS~~~evv~~AlttL~~L~~~~-s------------r~~I~~p~ll~ll~~~~~~~~~~~~~~nla  166 (178)
                      +.+.|+++.|+++|.+++++++..++.+|.+++... .            ...|...-.++.+..+..++  |..+...|
T Consensus       410 l~~~~~i~~L~~lL~~~d~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~L~~~~--~~~v~~~a  487 (528)
T 4b8j_A          410 LVSEGCIKPLCDLLICPDIRIVTVCLEGLENILKVGETDKTLAAGDVNVFSQMIDEAEGLEKIENLQSHD--NNEIYEKA  487 (528)
T ss_dssp             HHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHHHHHHHTCSCCHHHHHHHHTTHHHHHHHGGGCS--SHHHHHHH
T ss_pred             HHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhhcccccccHHHHHHHHCCcHHHHHHHHcCC--CHHHHHHH
Confidence            999999999999999999999999999999998542 1            11222344566777777655  78999999


Q ss_pred             HHHHHhhccC
Q 030369          167 KAFLDKHVTE  176 (178)
Q Consensus       167 ~~fL~~~~~~  176 (178)
                      ...|+.|...
T Consensus       488 ~~il~~~~~~  497 (528)
T 4b8j_A          488 VKILEAYWMD  497 (528)
T ss_dssp             HHHHHHHCC-
T ss_pred             HHHHHHHCCC
Confidence            9999998764

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}

Probab=99.20  E-value=6.8e-11  Score=111.61  Aligned_cols=149  Identities=22%  Similarity=0.248  Sum_probs=120.2

Q ss_pred             HHHHHHHhhcCChHHHHHHHHHHhhhhccCcccHHHhhhccChHHHHhhhcCCc----------------------HHHH
Q 030369           23 LQELVSQFQNSTDEERKEKIVANLANFAYDPYNYTFLRQLNVLELFLDCITEPN----------------------EKLV   80 (178)
Q Consensus        23 lq~LV~efq~t~~~e~keqvlanLaNfAyDP~N~~~LrqL~vidlfld~L~~~n----------------------~~l~   80 (178)
                      +..|+.-....+..+.++.+...|+|++.+|.|...+.+.++++.+++.|..++                      +.++
T Consensus       490 l~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~aa~al~nq~~~~~~~~~~v~  569 (780)
T 2z6g_A          490 LPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIV  569 (780)
T ss_dssp             HHHHHHTTSTTCCHHHHHHHHHHHHHHHSSHHHHHHHHHTTHHHHHHHHHHHHHHHHHHTTC------CCSTTCCHHHHH
T ss_pred             HHHHHHHhcCCChHHHHHHHHHHHHHHhcCHHHHHHHHHCCCHHHHHHHHHhcchhHHHHHhhccccchhhcccChHHHH
Confidence            566777676666669999999999999999999999999999999999997532                      4578


Q ss_pred             HHHHHHHHhhcCCchhhHHhhhcCChhHHHHhhcCCchhHHHHHHHHHHHhcCC-cccccccchHHHHHHHHhhhhcccc
Q 030369           81 EFGVGGICNASVDPANAAIITKSGGIPLIIECLSSPVRNTVNHALGALYYLCSM-STKEEILKPEVVDVIRRYAAAESVN  159 (178)
Q Consensus        81 EfAiggLcNL~~D~~nk~~I~~~gGi~~li~lLsS~~~evv~~AlttL~~L~~~-~sr~~I~~p~ll~ll~~~~~~~~~~  159 (178)
                      +.|+++|+|||.++.++..|.+.|+|++|+++|.+++++++..|..+|.+|..+ ..+..|...-.++.|.+...++  |
T Consensus       570 ~~a~~aL~~La~~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~~~~~~i~~~g~i~~L~~Ll~~~--~  647 (780)
T 2z6g_A          570 EACTGALHILARDIHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATAPLTELLHSR--N  647 (780)
T ss_dssp             HHHHHHHHHHTTSHHHHHHHHHTCCHHHHHHGGGCSCHHHHHHHHHHHHHHHTSHHHHHHHHHTTCHHHHHHGGGCS--C
T ss_pred             HHHHHHHHHHhcChhhHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCHHHHHHHHHCCCHHHHHHHHcCC--C
Confidence            999999999999999999999999999999999999999999999999999866 3555555433344444444444  5


Q ss_pred             hhHHHhHHHHHHhh
Q 030369          160 VSFSNLAKAFLDKH  173 (178)
Q Consensus       160 ~~~~nla~~fL~~~  173 (178)
                      +.++..|..-|...
T Consensus       648 ~~Vr~~A~~aL~~l  661 (780)
T 2z6g_A          648 EGVATYAAAVLFRM  661 (780)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH
Confidence            67776666655543

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A

Probab=99.18  E-value=3.3e-10  Score=100.18  Aligned_cols=128  Identities=15%  Similarity=0.177  Sum_probs=109.2

Q ss_pred             HHHHHHHHhhcCChHHHHHHHHHHhhhhcc-CcccHHHhhhccChHHHHhhhcCCcHHHHHHHHHHHHhhcCC-chhhHH
Q 030369           22 YLQELVSQFQNSTDEERKEKIVANLANFAY-DPYNYTFLRQLNVLELFLDCITEPNEKLVEFGVGGICNASVD-PANAAI   99 (178)
Q Consensus        22 ylq~LV~efq~t~~~e~keqvlanLaNfAy-DP~N~~~LrqL~vidlfld~L~~~n~~l~EfAiggLcNL~~D-~~nk~~   99 (178)
                      .+..||.-.+..++.+.|++++..|+|++. +|.+...+.+.++++.|+.+|.++++.+++.|+.+|+|+|.+ +.++..
T Consensus       131 ~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~  210 (530)
T 1wa5_B          131 VVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDY  210 (530)
T ss_dssp             CHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             CHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCccchHH
Confidence            456677766665588999999999999996 588999999999999999999999999999999999999987 789999


Q ss_pred             hhhcCChhHHHHhhcCCchhHHHHHHHHHHHhcCCc--cccccc----chHHHHHH
Q 030369          100 ITKSGGIPLIIECLSSPVRNTVNHALGALYYLCSMS--TKEEIL----KPEVVDVI  149 (178)
Q Consensus       100 I~~~gGi~~li~lLsS~~~evv~~AlttL~~L~~~~--sr~~I~----~p~ll~ll  149 (178)
                      +.+.|+++.|+++|.++++++..+|+.+|.+|+...  ....+.    .|+++++|
T Consensus       211 ~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL  266 (530)
T 1wa5_B          211 VLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLI  266 (530)
T ss_dssp             HHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHCCSSSCCCHHHHGGGHHHHHHHT
T ss_pred             HHHcCcHHHHHHHhccCCHHHHHHHHHHHHHHhCCCCCCCcHHHHHhHHHHHHHHH
Confidence            999999999999999889999999999999999542  222222    36666665

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}

Probab=99.15  E-value=2e-10  Score=104.69  Aligned_cols=122  Identities=23%  Similarity=0.282  Sum_probs=105.4

Q ss_pred             ChHHHHHHHHHHhhhhccCcccHHHhhhccChHHHHhhhcCCcHHHHHHHHHHHHhhcCCchhhHHhhhcCChhHHHHhh
Q 030369           34 TDEERKEKIVANLANFAYDPYNYTFLRQLNVLELFLDCITEPNEKLVEFGVGGICNASVDPANAAIITKSGGIPLIIECL  113 (178)
Q Consensus        34 ~~~e~keqvlanLaNfAyDP~N~~~LrqL~vidlfld~L~~~n~~l~EfAiggLcNL~~D~~nk~~I~~~gGi~~li~lL  113 (178)
                      ++++.++.++..|+|++.++.|...+++.++++.|++.|.++++.+++.|.++|+|++.|+..+..|.+.||++.|++++
T Consensus       428 ~~~~v~~~a~~aL~~La~~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~i~~~g~l~~L~~ll  507 (644)
T 2z6h_A          428 RMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATAPLTELL  507 (644)
T ss_dssp             CHHHHHHHHHHHHHHHTTSHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSHHHHHHHHHTTCHHHHHHHT
T ss_pred             cHHHHHHHHHHHHHHHhcCHHHHHHHHhCCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCHHHHHHHHHcCChhHHHHHH
Confidence            57888999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCchhHHHHHHHHHHHhcCCcccccccchHHHHHHHHhhhhc
Q 030369          114 SSPVRNTVNHALGALYYLCSMSTKEEILKPEVVDVIRRYAAAE  156 (178)
Q Consensus       114 sS~~~evv~~AlttL~~L~~~~sr~~I~~p~ll~ll~~~~~~~  156 (178)
                      .++++++...|..+|.+|..+.. .....---++++.+|-.++
T Consensus       508 ~~~~~~vr~~A~~aL~~l~~~~~-~~~~~~~~~~il~~~~~~~  549 (644)
T 2z6h_A          508 HSRNEGVATYAAAVLFRMSEDKP-QDYKKRLSVELTSSLFRTE  549 (644)
T ss_dssp             TCSCHHHHHHHHHHHHHHTTTSC-HHHHHHHHHHHHHHHSCCS
T ss_pred             cCCCHHHHHHHHHHHHHHhccCc-HhhhcccchHHHHHHHhCC
Confidence            99999999999999999987642 1111100256666655533

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A

Probab=99.11  E-value=2.4e-09  Score=90.71  Aligned_cols=130  Identities=14%  Similarity=0.130  Sum_probs=110.1

Q ss_pred             HHHHHHHHHhhcCChHHHHHHHHHHhhhhcc-CcccHHHhhhccChHHHHhhhcCCcHHHHHHHHHHHHhhcCC-chhhH
Q 030369           21 QYLQELVSQFQNSTDEERKEKIVANLANFAY-DPYNYTFLRQLNVLELFLDCITEPNEKLVEFGVGGICNASVD-PANAA   98 (178)
Q Consensus        21 ~ylq~LV~efq~t~~~e~keqvlanLaNfAy-DP~N~~~LrqL~vidlfld~L~~~n~~l~EfAiggLcNL~~D-~~nk~   98 (178)
                      ..+..||.-.+..++.+.|..++..|.|++. +|.+...+.+.++++.++..|..+++.+++.|+.+|+|++.+ +.++.
T Consensus        64 ~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~  143 (450)
T 2jdq_A           64 GVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRD  143 (450)
T ss_dssp             THHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             CcHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHHHHH
Confidence            4577788777776688999999999999996 688998899999999999999999999999999999999977 67899


Q ss_pred             HhhhcCChhHHHHhhcC-CchhHHHHHHHHHHHhcCCc---cccccc---chHHHHHHH
Q 030369           99 IITKSGGIPLIIECLSS-PVRNTVNHALGALYYLCSMS---TKEEIL---KPEVVDVIR  150 (178)
Q Consensus        99 ~I~~~gGi~~li~lLsS-~~~evv~~AlttL~~L~~~~---sr~~I~---~p~ll~ll~  150 (178)
                      .+.+.|+++.++++|.+ +++++...|+.+|.+|+...   .+..+.   .|+++++|.
T Consensus       144 ~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~  202 (450)
T 2jdq_A          144 YVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKVSPCLNVLSWLLF  202 (450)
T ss_dssp             HHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHHHHCCSSSCCCGGGTGGGHHHHHHHTT
T ss_pred             HHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHc
Confidence            99999999999999975 78999999999999999532   222222   366776663

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}

Probab=99.09  E-value=4.6e-10  Score=105.94  Aligned_cols=101  Identities=25%  Similarity=0.313  Sum_probs=97.0

Q ss_pred             hHHHHHHHHHHhhhhccCcccHHHhhhccChHHHHhhhcCCcHHHHHHHHHHHHhhcCCchhhHHhhhcCChhHHHHhhc
Q 030369           35 DEERKEKIVANLANFAYDPYNYTFLRQLNVLELFLDCITEPNEKLVEFGVGGICNASVDPANAAIITKSGGIPLIIECLS  114 (178)
Q Consensus        35 ~~e~keqvlanLaNfAyDP~N~~~LrqL~vidlfld~L~~~n~~l~EfAiggLcNL~~D~~nk~~I~~~gGi~~li~lLs  114 (178)
                      .++.++.++..|+|++.+|.|...|++.++++.|+++|.++++.+++.|.++|+||+.|+..+..|.+.||++.|++++.
T Consensus       565 ~~~v~~~a~~aL~~La~~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~~~~~~i~~~g~i~~L~~Ll~  644 (780)
T 2z6g_A          565 MEEIVEACTGALHILARDIHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATAPLTELLH  644 (780)
T ss_dssp             HHHHHHHHHHHHHHHTTSHHHHHHHHHTCCHHHHHHGGGCSCHHHHHHHHHHHHHHHTSHHHHHHHHHTTCHHHHHHGGG
T ss_pred             hHHHHHHHHHHHHHHhcChhhHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCHHHHHHHHHCCCHHHHHHHHc
Confidence            57789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCchhHHHHHHHHHHHhcCCc
Q 030369          115 SPVRNTVNHALGALYYLCSMS  135 (178)
Q Consensus       115 S~~~evv~~AlttL~~L~~~~  135 (178)
                      ++++++...|..+|.++..+.
T Consensus       645 ~~~~~Vr~~A~~aL~~l~~~~  665 (780)
T 2z6g_A          645 SRNEGVATYAAAVLFRMSEDK  665 (780)
T ss_dssp             CSCHHHHHHHHHHHHHHHTTS
T ss_pred             CCCHHHHHHHHHHHHHHHcCC
Confidence            999999999999999999763

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A

Probab=99.01  E-value=2.4e-09  Score=94.68  Aligned_cols=143  Identities=17%  Similarity=0.176  Sum_probs=111.5

Q ss_pred             HHHHHHHhhcCChHHHHHHHHHHhhhhccC-cccHHHhhhccChHHHHhhhcCCcHHHHHHHHHHHHhhcCCc-hhhHHh
Q 030369           23 LQELVSQFQNSTDEERKEKIVANLANFAYD-PYNYTFLRQLNVLELFLDCITEPNEKLVEFGVGGICNASVDP-ANAAII  100 (178)
Q Consensus        23 lq~LV~efq~t~~~e~keqvlanLaNfAyD-P~N~~~LrqL~vidlfld~L~~~n~~l~EfAiggLcNL~~D~-~nk~~I  100 (178)
                      +..||.-.+ +++.+.+++++..|+|++.| |.+...+.+.++++.++..|..+++.+++.|+.+|+|+|.+. .....+
T Consensus       175 i~~Lv~lL~-~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~  253 (530)
T 1wa5_B          175 VPLFIQLLY-TGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWS  253 (530)
T ss_dssp             HHHHHHHHH-HCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHCCSSSCCCHH
T ss_pred             HHHHHHHHc-CCCHHHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHHhccCCHHHHHHHHHHHHHHhCCCCCCCcHH
Confidence            345555554 35889999999999999977 889999999999999999999999999999999999999765 455566


Q ss_pred             hhcCChhHHHHhhcCCchhHHHHHHHHHHHhcCCc--cccccc----chHHHHHHHHhhhhcccchhHHHhHHHHHHh
Q 030369          101 TKSGGIPLIIECLSSPVRNTVNHALGALYYLCSMS--TKEEIL----KPEVVDVIRRYAAAESVNVSFSNLAKAFLDK  172 (178)
Q Consensus       101 ~~~gGi~~li~lLsS~~~evv~~AlttL~~L~~~~--sr~~I~----~p~ll~ll~~~~~~~~~~~~~~nla~~fL~~  172 (178)
                      ...|++|.|+++|.++++++...|+.+|.+|+...  ....+.    .|.++++|.    ++  +..++.-|.-.|-.
T Consensus       254 ~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~Lv~lL~----~~--~~~v~~~a~~~L~~  325 (530)
T 1wa5_B          254 VVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLS----HE--STLVQTPALRAVGN  325 (530)
T ss_dssp             HHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGG----CS--CHHHHHHHHHHHHH
T ss_pred             HHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhcCcHHHHHHHHC----CC--ChhhHHHHHHHHHH
Confidence            66889999999999999999999999999999642  233333    366776663    22  34555555444443

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}

Probab=99.00  E-value=5.7e-10  Score=107.72  Aligned_cols=129  Identities=10%  Similarity=0.087  Sum_probs=111.1

Q ss_pred             HHHHHHHhhcC-ChHHHHHHHHHHhhhhccCcccHHHhhh-ccChHHHHhhhcCCcHHHHHHHHHHHHhhcCCch-----
Q 030369           23 LQELVSQFQNS-TDEERKEKIVANLANFAYDPYNYTFLRQ-LNVLELFLDCITEPNEKLVEFGVGGICNASVDPA-----   95 (178)
Q Consensus        23 lq~LV~efq~t-~~~e~keqvlanLaNfAyDP~N~~~Lrq-L~vidlfld~L~~~n~~l~EfAiggLcNL~~D~~-----   95 (178)
                      +..|+.=.... .+.+.++.++..|++.+-||.++..++. .|+|+.++++|.+++..++.-|+..|+|++.++.     
T Consensus       379 v~~l~~lL~~~~~d~~v~~~AveaLayLS~~~~vk~~lv~d~g~Ip~LV~LL~s~d~~i~~~al~~L~NLt~~~d~q~~~  458 (810)
T 3now_A          379 AEACRRFLIKPGKDKDIRRWAADGLAYLTLDAECKEKLIEDKASIHALMDLARGGNQSCLYGVVTTFVNLCNAYEKQEML  458 (810)
T ss_dssp             HHHHHHHHHCSSCCSSHHHHHHHHHHHHTTSHHHHHHHHHCHHHHHHHHHHHHTTCGGGHHHHHHHHHHHTTCSCCCCCC
T ss_pred             HHHHHHHhcCCCCCHHHHHHHHHHHHHHhCCcHHHHHHHHccchHHHHHHHhCCCChHHHHHHHHHHHHHcCCchhhhhh
Confidence            33444444444 2788999999999999999999999996 8999999999999999999999999999998652     


Q ss_pred             -------------------------hh---HHhhhcCChhHHHHhhcCCchhHHHHHHHHHHHhcCC-ccccccc----c
Q 030369           96 -------------------------NA---AIITKSGGIPLIIECLSSPVRNTVNHALGALYYLCSM-STKEEIL----K  142 (178)
Q Consensus        96 -------------------------nk---~~I~~~gGi~~li~lLsS~~~evv~~AlttL~~L~~~-~sr~~I~----~  142 (178)
                                               ++   +.|++.|++|++++||+|+++++...|+.+|.++..+ +.|..|.    .
T Consensus       459 ~~l~~la~~s~~~v~~~~~ld~~~~v~~r~~~VveaGaVp~LV~LL~s~s~~vqe~Aa~aL~NLA~d~~~r~~Vv~~Gai  538 (810)
T 3now_A          459 PEMIELAKFAKQHIPEEHELDDVDFINKRITVLANEGITTALCALAKTESHNSQELIARVLNAVCGLKELRGKVVQEGGV  538 (810)
T ss_dssp             CSCGGGTTTTCCSCCCSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHTCCCHHHHHHHHHHHHHHHTSHHHHHHHHHTTHH
T ss_pred             HHHHHHHHHhhccCccccccccHHHHHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHCCCH
Confidence                                     23   6889999999999999999999999999999999977 5777777    4


Q ss_pred             hHHHHHHHH
Q 030369          143 PEVVDVIRR  151 (178)
Q Consensus       143 p~ll~ll~~  151 (178)
                      |||+++|+.
T Consensus       539 p~Lv~LL~s  547 (810)
T 3now_A          539 KALLRMALE  547 (810)
T ss_dssp             HHHHHHHHS
T ss_pred             HHHHHHHcc
Confidence            999999963

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A

Probab=98.97  E-value=1.3e-08  Score=86.21  Aligned_cols=148  Identities=14%  Similarity=0.066  Sum_probs=111.8

Q ss_pred             HHHHHHHhhcCChHHHHHHHHHHhhhhccC--cccHHHhhhccChHHHHhhhcCCcHHHHHHHHHHHHhhcCC-chhhHH
Q 030369           23 LQELVSQFQNSTDEERKEKIVANLANFAYD--PYNYTFLRQLNVLELFLDCITEPNEKLVEFGVGGICNASVD-PANAAI   99 (178)
Q Consensus        23 lq~LV~efq~t~~~e~keqvlanLaNfAyD--P~N~~~LrqL~vidlfld~L~~~n~~l~EfAiggLcNL~~D-~~nk~~   99 (178)
                      +..|+.-.++.++.+.+++++..|+|++.+  |.+...+. -++++.++..|..+++.+++.|..+|+|+|.+ +.++..
T Consensus       151 i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~-~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~  229 (450)
T 2jdq_A          151 LPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKV-SPCLNVLSWLLFVSDTDVLADACWALSYLSDGPNDKIQA  229 (450)
T ss_dssp             HHHHHHHTTSCCCHHHHHHHHHHHHHHHCCSSSCCCGGGT-GGGHHHHHHHTTCCCHHHHHHHHHHHHHHTSSSHHHHHH
T ss_pred             HHHHHHHhcCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHH-HHHHHHHHHHHccCCHHHHHHHHHHHHHHHCCCcHHHHH
Confidence            556777677667899999999999999965  55443333 78999999999999999999999999999975 677888


Q ss_pred             hhhcCChhHHHHhhcCCchhHHHHHHHHHHHhcCCc--ccccccchHHHHHHHHhhhhcccchhHHHhHHHHHHhh
Q 030369          100 ITKSGGIPLIIECLSSPVRNTVNHALGALYYLCSMS--TKEEILKPEVVDVIRRYAAAESVNVSFSNLAKAFLDKH  173 (178)
Q Consensus       100 I~~~gGi~~li~lLsS~~~evv~~AlttL~~L~~~~--sr~~I~~p~ll~ll~~~~~~~~~~~~~~nla~~fL~~~  173 (178)
                      +.+.|++|.++++|.++++++...|+.+|.+++...  .+..+....++..|..+-.++  +++++.-|...|...
T Consensus       230 ~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~--~~~vr~~a~~~L~~l  303 (450)
T 2jdq_A          230 VIDAGVCRRLVELLMHNDYKVVSPALRAVGNIVTGDDIQTQVILNCSALQSLLHLLSSP--KESIKKEACWTISNI  303 (450)
T ss_dssp             HHHTTTHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHTTCS--SHHHHHHHHHHHHHH
T ss_pred             HHHcCcHHHHHHHHCCCchhHHHHHHHHHHHHhhCChHHHHHHHHCccHHHHHHHHcCC--CHHHHHHHHHHHHHH
Confidence            889999999999999999999999999999999652  233333333344333333333  356666555555443

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}

Probab=98.89  E-value=4.3e-09  Score=101.65  Aligned_cols=138  Identities=6%  Similarity=0.061  Sum_probs=114.2

Q ss_pred             hcCChHHHHHHHHHHhhhhccCcccHHHhhh-ccChHHHHhhhcCCcHHHHHHHHHHHHhhcC-CchhhHHhhh-cCChh
Q 030369           31 QNSTDEERKEKIVANLANFAYDPYNYTFLRQ-LNVLELFLDCITEPNEKLVEFGVGGICNASV-DPANAAIITK-SGGIP  107 (178)
Q Consensus        31 q~t~~~e~keqvlanLaNfAyDP~N~~~Lrq-L~vidlfld~L~~~n~~l~EfAiggLcNL~~-D~~nk~~I~~-~gGi~  107 (178)
                      ..+++...|+..+.-|+|.+.+|.+...+.+ .+++++++.+|.+++..+++-|.++|+|++. ++.....|++ .||||
T Consensus       632 L~s~~~~Vq~~A~~~L~NLa~~~~~~~~~v~~~g~l~~Lv~LL~s~d~~vq~~Aa~ALanLt~~s~~~~~~ii~~~g~I~  711 (810)
T 3now_A          632 LMEDHLYLTRAAAQCLCNLVMSEDVIKMFEGNNDRVKFLALLCEDEDEETATACAGALAIITSVSVKCCEKILAIASWLD  711 (810)
T ss_dssp             HHSCCTTHHHHHHHHHHHHTTSHHHHHHHHSSSSHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHCHHHHHHHHTSTTHHH
T ss_pred             HcCCCHHHHHHHHHHHHHHhCChHHHHHHHhccCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHHHcCCHH
Confidence            3456788999999999999999999998886 7999999999999999999999999999998 7888888888 89999


Q ss_pred             HHHHhhcCCchhHHHHHHHHHHHhcCC--cccccccc----hHHHHHHHHhhhhcccchhHHHhHHHHHH
Q 030369          108 LIIECLSSPVRNTVNHALGALYYLCSM--STKEEILK----PEVVDVIRRYAAAESVNVSFSNLAKAFLD  171 (178)
Q Consensus       108 ~li~lLsS~~~evv~~AlttL~~L~~~--~sr~~I~~----p~ll~ll~~~~~~~~~~~~~~nla~~fL~  171 (178)
                      +|+++|.+++.+++..|+.++.+++..  +....|..    |++.++++.   +...+.++...|.--|+
T Consensus       712 ~Lv~LL~s~d~~vq~~A~~aL~NL~~~s~e~~~~l~e~G~i~~L~~LL~~---~d~~~~~i~e~Al~aL~  778 (810)
T 3now_A          712 ILHTLIANPSPAVQHRGIVIILNMINAGEEIAKKLFETDIMELLSGLGQL---PDDTRAKAREVATQCLA  778 (810)
T ss_dssp             HHHHHHTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHTSTHHHHHTTSCCC---TTSTTHHHHHHHHHHHH
T ss_pred             HHHHHHCCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHhC---cccCcHHHHHHHHHHHH
Confidence            999999999999999999999999863  23444443    666666642   21124678877765554

>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}

Probab=98.63  E-value=8.8e-08  Score=92.35  Aligned_cols=96  Identities=14%  Similarity=0.148  Sum_probs=80.9

Q ss_pred             cHHHhhhccChHHHHhhhcCCcHHHHHHHHHHHHhhcCCchhhHHhhhcCChhHHHHhhcCCchh---HHHHHHHHHHHh
Q 030369           55 NYTFLRQLNVLELFLDCITEPNEKLVEFGVGGICNASVDPANAAIITKSGGIPLIIECLSSPVRN---TVNHALGALYYL  131 (178)
Q Consensus        55 N~~~LrqL~vidlfld~L~~~n~~l~EfAiggLcNL~~D~~nk~~I~~~gGi~~li~lLsS~~~e---vv~~AlttL~~L  131 (178)
                      |...+.+.|||++|+.++.++++..+|-|+..|.|+|.|+.++.++.++||+++|+++|++....   +..+|..+|..|
T Consensus       449 ~~~~l~eaGvIp~Lv~Ll~S~s~~~re~A~~aL~nLS~d~~~R~~lvqqGal~~LL~lL~s~~~~~~~~k~~AA~ALArL  528 (778)
T 3opb_A          449 NEKYILRTELISFLKREMHNLSPNCKQQVVRIIYNITRSKNFIPQLAQQGAVKIILEYLANKQDIGEPIRILGCRALTRM  528 (778)
T ss_dssp             HHHHTTTTTHHHHHHHHGGGSCHHHHHHHHHHHHHHHTSGGGHHHHHHTTHHHHHHHHTTCC---CCHHHHHHHHHHHHH
T ss_pred             HHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCCcchHHHHHHHHHHHHH
Confidence            78899999999999999999999999999999999999999999999999999999999877544   778999999998


Q ss_pred             cCCc-c-----ccccc--chHHHHHHH
Q 030369          132 CSMS-T-----KEEIL--KPEVVDVIR  150 (178)
Q Consensus       132 ~~~~-s-----r~~I~--~p~ll~ll~  150 (178)
                      .-.. .     ...+.  .|||+++|.
T Consensus       529 lis~np~~~f~~~~~~~aI~pLv~LL~  555 (778)
T 3opb_A          529 LIFTNPGLIFKKYSALNAIPFLFELLP  555 (778)
T ss_dssp             HHTSCHHHHSSSSCSTTHHHHHHHTSC
T ss_pred             HhcCCHHHHcCCCccccchHHHHHHcC
Confidence            7221 1     11111  499999986

>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}

Probab=98.54  E-value=4e-07  Score=87.78  Aligned_cols=144  Identities=17%  Similarity=0.201  Sum_probs=102.5

Q ss_pred             HHHHHHHhhcCChHHHHHHHHHHhhhhccCcccHHHhhhccChHHHHhhhcCCcHH---HHHHHHHHHHhhcCCchhhHH
Q 030369           23 LQELVSQFQNSTDEERKEKIVANLANFAYDPYNYTFLRQLNVLELFLDCITEPNEK---LVEFGVGGICNASVDPANAAI   99 (178)
Q Consensus        23 lq~LV~efq~t~~~e~keqvlanLaNfAyDP~N~~~LrqL~vidlfld~L~~~n~~---l~EfAiggLcNL~~D~~nk~~   99 (178)
                      +..||+.. .+++...|+++...|.|++-||.|+..+.+.|+++++|..|.+..+.   ..+.|+.+|+|+......+..
T Consensus       459 Ip~Lv~Ll-~S~s~~~re~A~~aL~nLS~d~~~R~~lvqqGal~~LL~lL~s~~~~~~~~k~~AA~ALArLlis~np~~~  537 (778)
T 3opb_A          459 ISFLKREM-HNLSPNCKQQVVRIIYNITRSKNFIPQLAQQGAVKIILEYLANKQDIGEPIRILGCRALTRMLIFTNPGLI  537 (778)
T ss_dssp             HHHHHHHG-GGSCHHHHHHHHHHHHHHHTSGGGHHHHHHTTHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHTSCHHHH
T ss_pred             HHHHHHHH-cCCCHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhcCCHHHH
Confidence            34577665 44688999999999999999999999999999999999999987544   899999999999743332222


Q ss_pred             hhh---cCChhHHHHhhcC-Cchh-------------HHHHHHHHHHHhcCCc------ccccccc-hHHHHHHHHhhhh
Q 030369          100 ITK---SGGIPLIIECLSS-PVRN-------------TVNHALGALYYLCSMS------TKEEILK-PEVVDVIRRYAAA  155 (178)
Q Consensus       100 I~~---~gGi~~li~lLsS-~~~e-------------vv~~AlttL~~L~~~~------sr~~I~~-p~ll~ll~~~~~~  155 (178)
                      |-.   .|+|++|+++|+. +..+             -+..|+.+|.||.+..      .|..|.. +-.+..+..+-.+
T Consensus       538 f~~~~~~~aI~pLv~LL~~~~~~~~~~l~~~~~~~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~~L~~LL~s  617 (778)
T 3opb_A          538 FKKYSALNAIPFLFELLPRSTPVDDNPLHNDEQIKLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIENLMLD  617 (778)
T ss_dssp             SSSSCSTTHHHHHHHTSCCSSSCSSCC---CCCCCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHHHHHHHHGGGC
T ss_pred             cCCCccccchHHHHHHcCCCCCcccccccccccccHHHHHHHHHHHHHHhcCCcccchHHHHHHHHhcCHHHHHHHHHhC
Confidence            211   3899999999972 3322             1679999999999653      2555554 3455555555454


Q ss_pred             cccchhHHHhHHHH
Q 030369          156 ESVNVSFSNLAKAF  169 (178)
Q Consensus       156 ~~~~~~~~nla~~f  169 (178)
                      +  |..++.-|+-.
T Consensus       618 ~--n~~VrrAA~el  629 (778)
T 3opb_A          618 E--NVPLQRSTLEL  629 (778)
T ss_dssp             S--SHHHHHHHHHH
T ss_pred             C--CHHHHHHHHHH
Confidence            3  45555555433

>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A

Probab=98.48  E-value=3.4e-07  Score=85.45  Aligned_cols=154  Identities=11%  Similarity=0.072  Sum_probs=113.9

Q ss_pred             hHHHHHHHHHHhhcCChHHHHHHHHHHhhhhccCcccHHHhhhccChHHH-HhhhcCCcHHHHHHHHHHHHhhcCC--ch
Q 030369           19 RLQYLQELVSQFQNSTDEERKEKIVANLANFAYDPYNYTFLRQLNVLELF-LDCITEPNEKLVEFGVGGICNASVD--PA   95 (178)
Q Consensus        19 R~~ylq~LV~efq~t~~~e~keqvlanLaNfAyDP~N~~~LrqL~vidlf-ld~L~~~n~~l~EfAiggLcNL~~D--~~   95 (178)
                      |-+=+.-|+...+ +++.+.|+.+...|+|++.||.+...+-+-+++... ..+|..++..+++-|+|+|-|||.+  +.
T Consensus        32 ~~~~i~Pll~~L~-S~~~~~r~~A~~al~~l~~~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g~d  110 (684)
T 4gmo_A           32 REDKILPVLKDLK-SPDAKSRTTAAGAIANIVQDAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEEAD  110 (684)
T ss_dssp             HHHTTHHHHHHHS-SSCCSHHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSCHH
T ss_pred             chhhHHHHHHHcC-CCCHHHHHHHHHHHHHHHcCcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCch
Confidence            3334556777776 457888999999999999999999999999888765 5578888999999999999999976  78


Q ss_pred             hhHHhhhcCChhHHHHhhcCCc---------------------hhHHHHHHHHHHHhcCC--ccccccc----chHHHHH
Q 030369           96 NAAIITKSGGIPLIIECLSSPV---------------------RNTVNHALGALYYLCSM--STKEEIL----KPEVVDV  148 (178)
Q Consensus        96 nk~~I~~~gGi~~li~lLsS~~---------------------~evv~~AlttL~~L~~~--~sr~~I~----~p~ll~l  148 (178)
                      ...++.+.|.+++|..+|.+..                     .++..+++++|++|+..  .....|.    .|+++.+
T Consensus       111 ~~~~l~~~~il~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~s~~~~~~v~~~~~l~~l~~~  190 (684)
T 4gmo_A          111 FCVHLYRLDVLTAIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALARDEIHEAVATKQTILRLLFR  190 (684)
T ss_dssp             HHHHHHHTTHHHHHHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHTCHHHHHHHHH
T ss_pred             HHHHHHHcChHHHHHHHHHhhHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhcccHHHHHHH
Confidence            8899999999999998874321                     13445788899998843  2333443    3677766


Q ss_pred             HHHhhhhcccchhHHHhHHHHHHhhccC
Q 030369          149 IRRYAAAESVNVSFSNLAKAFLDKHVTE  176 (178)
Q Consensus       149 l~~~~~~~~~~~~~~nla~~fL~~~~~~  176 (178)
                      +.....   ....+++-|.-+|-.....
T Consensus       191 L~~~~~---~~~~v~~~a~~~L~~ls~d  215 (684)
T 4gmo_A          191 LISADI---APQDIYEEAISCLTTLSED  215 (684)
T ss_dssp             HHHHCC---SCHHHHHHHHHHHHHHHTT
T ss_pred             HHhcCC---CcHHHHHHHHHHHHHHhcc
Confidence            654333   2356777666666554443

>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A

Probab=97.72  E-value=3.5e-05  Score=71.86  Aligned_cols=95  Identities=15%  Similarity=0.180  Sum_probs=76.3

Q ss_pred             hhhccChHHHHhhhcCCcHHHHHHHHHHHHhhcCCchhhHHhhhcCChhHH-HHhhcCCchhHHHHHHHHHHHhcCCc--
Q 030369           59 LRQLNVLELFLDCITEPNEKLVEFGVGGICNASVDPANAAIITKSGGIPLI-IECLSSPVRNTVNHALGALYYLCSMS--  135 (178)
Q Consensus        59 LrqL~vidlfld~L~~~n~~l~EfAiggLcNL~~D~~nk~~I~~~gGi~~l-i~lLsS~~~evv~~AlttL~~L~~~~--  135 (178)
                      +++-.++| +|+.|+++++...+.|.++|+|+|.|+.++..+...|||.++ ..+|++++.+|+..|..+|-+|+..+  
T Consensus        31 ~~~~~i~P-ll~~L~S~~~~~r~~A~~al~~l~~~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g~  109 (684)
T 4gmo_A           31 LREDKILP-VLKDLKSPDAKSRTTAAGAIANIVQDAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEEA  109 (684)
T ss_dssp             HHHHTTHH-HHHHHSSSCCSHHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSCH
T ss_pred             cchhhHHH-HHHHcCCCCHHHHHHHHHHHHHHHcCcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCc
Confidence            45555555 678899999999999999999999999999999999999765 66899999999999999999998552  


Q ss_pred             -cccccc----chHHHHHHHHhhh
Q 030369          136 -TKEEIL----KPEVVDVIRRYAA  154 (178)
Q Consensus       136 -sr~~I~----~p~ll~ll~~~~~  154 (178)
                       ....+.    .||++..++....
T Consensus       110 d~~~~l~~~~il~~L~~~l~~~~~  133 (684)
T 4gmo_A          110 DFCVHLYRLDVLTAIEHAAKAVLE  133 (684)
T ss_dssp             HHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHcChHHHHHHHHHhhHH
Confidence             122222    3888888876433

>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}

Probab=97.70  E-value=0.0012  Score=50.91  Aligned_cols=131  Identities=11%  Similarity=0.113  Sum_probs=75.4

Q ss_pred             HHHHHHHHhhcCChHHHHHHHHHHhhhhccCcccHHHhhhccChHHHHhhhcCCcHHHHHHHHHHHHhhcCCchhhHHhh
Q 030369           22 YLQELVSQFQNSTDEERKEKIVANLANFAYDPYNYTFLRQLNVLELFLDCITEPNEKLVEFGVGGICNASVDPANAAIIT  101 (178)
Q Consensus        22 ylq~LV~efq~t~~~e~keqvlanLaNfAyDP~N~~~LrqL~vidlfld~L~~~n~~l~EfAiggLcNL~~D~~nk~~I~  101 (178)
                      -+..|+.-+++ ++.+.|..++..|.++..          -++++.++..|..+++.+...|+.+|.++..         
T Consensus        51 ~~~~L~~~l~~-~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~---------  110 (211)
T 3ltm_A           51 AVEPLIKALKD-EDAWVRRAAADALGQIGD----------ERAVEPLIKALKDEDGWVRQSAAVALGQIGD---------  110 (211)
T ss_dssp             GHHHHHHHTTC-SCHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC---------
T ss_pred             HHHHHHHHHcC-CCHHHHHHHHHHHHhhCC----------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc---------
Confidence            34455555554 467777777777777652          2456667777777777777777777776642         


Q ss_pred             hcCChhHHHHhhcCCchhHHHHHHHHHHHhcCCccccccc----------------------chHHHHHHHHhhhhcccc
Q 030369          102 KSGGIPLIIECLSSPVRNTVNHALGALYYLCSMSTKEEIL----------------------KPEVVDVIRRYAAAESVN  159 (178)
Q Consensus       102 ~~gGi~~li~lLsS~~~evv~~AlttL~~L~~~~sr~~I~----------------------~p~ll~ll~~~~~~~~~~  159 (178)
                       .+.++.|+++|+++++.|...|+.+|-.+..++....+.                      .|..+..|...-..+  +
T Consensus       111 -~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~--~  187 (211)
T 3ltm_A          111 -ERAVEPLIKALKDEDWFVRIAAAFALGEIGDERAVEPLIKALKDEDGWVRQSAADALGEIGGERVRAAMEKLAETG--T  187 (211)
T ss_dssp             -GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCSHHHHHHHHHHHHHC--C
T ss_pred             -HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCchhHHHHHHHHHhCC--C
Confidence             134566666666666666666666665554321111110                      144555555544433  4


Q ss_pred             hhHHHhHHHHHHhhcc
Q 030369          160 VSFSNLAKAFLDKHVT  175 (178)
Q Consensus       160 ~~~~nla~~fL~~~~~  175 (178)
                      +.++..|..-|.++..
T Consensus       188 ~~vr~~A~~aL~~~~~  203 (211)
T 3ltm_A          188 GFARKVAVNYLETHKS  203 (211)
T ss_dssp             HHHHHHHHHHHHC---
T ss_pred             HHHHHHHHHHHHhcCC
Confidence            6777777777666544

>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}

Probab=97.48  E-value=0.0031  Score=48.47  Aligned_cols=97  Identities=8%  Similarity=0.049  Sum_probs=80.9

Q ss_pred             CChHHHHHHHHHHhhcCChHHHHHHHHHHhhhhccCcccHHHhhhccChHHHHhhhcCCcHHHHHHHHHHHHhhcCCchh
Q 030369           17 TPRLQYLQELVSQFQNSTDEERKEKIVANLANFAYDPYNYTFLRQLNVLELFLDCITEPNEKLVEFGVGGICNASVDPAN   96 (178)
Q Consensus        17 ~~R~~ylq~LV~efq~t~~~e~keqvlanLaNfAyDP~N~~~LrqL~vidlfld~L~~~n~~l~EfAiggLcNL~~D~~n   96 (178)
                      ....+-+..|+.-++ .++...|.+++..|..+..          -++++.++..|..+++.+...|+.+|.++..    
T Consensus        15 ~~~~~~~~~L~~~L~-~~~~~vR~~A~~~L~~~~~----------~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~----   79 (211)
T 3ltm_A           15 RADPEKVEMYIKNLQ-DDSYYVRRAAAYALGKIGD----------ERAVEPLIKALKDEDAWVRRAAADALGQIGD----   79 (211)
T ss_dssp             -CCGGGHHHHHHHTT-CSSHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSCHHHHHHHHHHHHHHCC----
T ss_pred             hcCHhHHHHHHHHHc-CCCHHHHHHHHHHHHHhCC----------ccHHHHHHHHHcCCCHHHHHHHHHHHHhhCC----
Confidence            344566778888887 5688999999999998764          3688999999999999999999999998852    


Q ss_pred             hHHhhhcCChhHHHHhhcCCchhHHHHHHHHHHHhcCC
Q 030369           97 AAIITKSGGIPLIIECLSSPVRNTVNHALGALYYLCSM  134 (178)
Q Consensus        97 k~~I~~~gGi~~li~lLsS~~~evv~~AlttL~~L~~~  134 (178)
                            .+.++.|+++|.++++.+...|+.+|-.+..+
T Consensus        80 ------~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~~  111 (211)
T 3ltm_A           80 ------ERAVEPLIKALKDEDGWVRQSAAVALGQIGDE  111 (211)
T ss_dssp             ------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCG
T ss_pred             ------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCcH
Confidence                  35689999999999999999999999887654

>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}

Probab=97.47  E-value=0.0041  Score=47.43  Aligned_cols=90  Identities=10%  Similarity=0.068  Sum_probs=57.3

Q ss_pred             HHHHHHHHhhcCChHHHHHHHHHHhhhhccCcccHHHhhhccChHHHHhhhcCCcHHHHHHHHHHHHhhcCCchhhHHhh
Q 030369           22 YLQELVSQFQNSTDEERKEKIVANLANFAYDPYNYTFLRQLNVLELFLDCITEPNEKLVEFGVGGICNASVDPANAAIIT  101 (178)
Q Consensus        22 ylq~LV~efq~t~~~e~keqvlanLaNfAyDP~N~~~LrqL~vidlfld~L~~~n~~l~EfAiggLcNL~~D~~nk~~I~  101 (178)
                      .+..|+.-+. .++.+.|..++..|+.+.. |         ++++.++..|..+++.+...|+.+|.++..         
T Consensus        46 ~~~~L~~~l~-~~~~~vr~~a~~~L~~~~~-~---------~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~---------  105 (201)
T 3ltj_A           46 AVEPLIKALK-DEDAWVRRAAADALGQIGD-E---------RAVEPLIKALKDEDGWVRQSAAVALGQIGD---------  105 (201)
T ss_dssp             GHHHHHHHTT-CSSHHHHHHHHHHHHHHCC-G---------GGHHHHHHHTTCSSHHHHHHHHHHHHHHCC---------
T ss_pred             HHHHHHHHHc-CCCHHHHHHHHHHHHhhCC-H---------HHHHHHHHHHcCCCHHHHHHHHHHHHHhCc---------
Confidence            3445555554 4466777777777777652 2         466677777777777777777777776632         


Q ss_pred             hcCChhHHHHhhcCCchhHHHHHHHHHHHhc
Q 030369          102 KSGGIPLIIECLSSPVRNTVNHALGALYYLC  132 (178)
Q Consensus       102 ~~gGi~~li~lLsS~~~evv~~AlttL~~L~  132 (178)
                       .+.++.|+++|+++++.|...|+.+|-.+.
T Consensus       106 -~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~  135 (201)
T 3ltj_A          106 -ERAVEPLIKALKDEDWFVRIAAAFALGEIG  135 (201)
T ss_dssp             -GGGHHHHHHHTTCSSHHHHHHHHHHHHHHT
T ss_pred             -HHHHHHHHHHHcCCCHHHHHHHHHHHHHhC
Confidence             134566666676666666666666665554

>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}

Probab=97.38  E-value=0.0059  Score=46.53  Aligned_cols=80  Identities=9%  Similarity=0.035  Sum_probs=46.3

Q ss_pred             ChHHHHHHHHHHhhhhccCcccHHHhhhccChHHHHhhhcCCcHHHHHHHHHHHHhhcCCchhhHHhhhcCChhHHHHhh
Q 030369           34 TDEERKEKIVANLANFAYDPYNYTFLRQLNVLELFLDCITEPNEKLVEFGVGGICNASVDPANAAIITKSGGIPLIIECL  113 (178)
Q Consensus        34 ~~~e~keqvlanLaNfAyDP~N~~~LrqL~vidlfld~L~~~n~~l~EfAiggLcNL~~D~~nk~~I~~~gGi~~li~lL  113 (178)
                      ++.+.|.+++..|+.+..          -++++.++..|..+++.+...|+.+|..+..          .+.++.|+++|
T Consensus        26 ~~~~vr~~A~~~L~~~~~----------~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~----------~~~~~~L~~~l   85 (201)
T 3ltj_A           26 DSYYVRRAAAYALGKIGD----------ERAVEPLIKALKDEDAWVRRAAADALGQIGD----------ERAVEPLIKAL   85 (201)
T ss_dssp             SCHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC----------GGGHHHHHHHT
T ss_pred             CCHHHHHHHHHHHHhcCC----------hhHHHHHHHHHcCCCHHHHHHHHHHHHhhCC----------HHHHHHHHHHH
Confidence            455666666666665542          1455666666666666666666666665531          13456666666


Q ss_pred             cCCchhHHHHHHHHHHHhcC
Q 030369          114 SSPVRNTVNHALGALYYLCS  133 (178)
Q Consensus       114 sS~~~evv~~AlttL~~L~~  133 (178)
                      .++++.+...|+.+|-.+..
T Consensus        86 ~d~~~~vr~~a~~aL~~~~~  105 (201)
T 3ltj_A           86 KDEDGWVRQSAAVALGQIGD  105 (201)
T ss_dssp             TCSSHHHHHHHHHHHHHHCC
T ss_pred             cCCCHHHHHHHHHHHHHhCc
Confidence            66666666666666655543

>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A

Probab=97.22  E-value=0.0025  Score=60.53  Aligned_cols=150  Identities=15%  Similarity=0.218  Sum_probs=118.3

Q ss_pred             hHHHHHHHHHHhhcCChHHHHHHHHHHhhhhccCcccHHHhhhccChHHHHhhhcCC--cHHHHHHHHHHHHhh-cCCch
Q 030369           19 RLQYLQELVSQFQNSTDEERKEKIVANLANFAYDPYNYTFLRQLNVLELFLDCITEP--NEKLVEFGVGGICNA-SVDPA   95 (178)
Q Consensus        19 R~~ylq~LV~efq~t~~~e~keqvlanLaNfAyDP~N~~~LrqL~vidlfld~L~~~--n~~l~EfAiggLcNL-~~D~~   95 (178)
                      =-|++..|++..+.++-.|-|..++..|--|+.|   |+.-.-.+.++.+++.|..+  |..++..+.--|+|+ |.|..
T Consensus        19 ~~etI~~L~~Rl~~~tl~eDRR~Av~~Lk~~sk~---y~~~Vg~~~l~~li~~L~~d~~D~e~v~~~LetL~~l~~~~~~   95 (651)
T 3grl_A           19 EAETIQKLCDRVASSTLLDDRRNAVRALKSLSKK---YRLEVGIQAMEHLIHVLQTDRSDSEIIGYALDTLYNIISNDEE   95 (651)
T ss_dssp             HHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTTT---TTTHHHHHTHHHHHHHHHSCTTCHHHHHHHHHHHHHHHCCC--
T ss_pred             hhhHHHHHHHHHhhccchhHHHHHHHHHHHHHHH---hHHHhhhhhHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCc
Confidence            3589999999999999999999999999999865   55556678899999999875  889999999999995 65543


Q ss_pred             -----------------hh-HHhhhcCChhHHHHhhcCCchhHHHHHHHHHHHhcCC--c-cccccc-----chHHHHHH
Q 030369           96 -----------------NA-AIITKSGGIPLIIECLSSPVRNTVNHALGALYYLCSM--S-TKEEIL-----KPEVVDVI  149 (178)
Q Consensus        96 -----------------nk-~~I~~~gGi~~li~lLsS~~~evv~~AlttL~~L~~~--~-sr~~I~-----~p~ll~ll  149 (178)
                                       +. .+|-+.++|+.|+.+|.+++..+..+++.+|-.|+..  + ....|.     +|.++++|
T Consensus        96 ~~~~~~~~~~~~~~~~~~~d~f~~~~~~i~~Ll~lL~~~df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL  175 (651)
T 3grl_A           96 EEVEENSTRQSEDLGSQFTEIFIKQQENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLL  175 (651)
T ss_dssp             ------------CHHHHHHHHHHHSTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGG
T ss_pred             ccccccccccchHHHHHHHHHHHcCCccHHHHHHHhcCccHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHH
Confidence                             22 4456789999999999999999999999999999843  2 345555     36777666


Q ss_pred             HHhhhhcccchhHHHhHHHHHHhhccCC
Q 030369          150 RRYAAAESVNVSFSNLAKAFLDKHVTEN  177 (178)
Q Consensus       150 ~~~~~~~~~~~~~~nla~~fL~~~~~~~  177 (178)
                      .      +.+.-++|-|-.+|-.-+..|
T Consensus       176 ~------d~rE~iRneallLL~~Lt~~n  197 (651)
T 3grl_A          176 A------DSREVIRNDGVLLLQALTRSN  197 (651)
T ss_dssp             G------CSSHHHHHHHHHHHHHHHTTC
T ss_pred             h------CchHHHHHHHHHHHHHHhcCC
Confidence            2      124689999999987665544

>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A

Probab=97.19  E-value=0.0044  Score=58.89  Aligned_cols=132  Identities=12%  Similarity=0.164  Sum_probs=90.4

Q ss_pred             HHHHHHHhhcCChHHHHHHHHHHhhhhc-cCcccHHHhhhccChHHHHhhhcCCcH-------HHHH-HHHHHHHhhcCC
Q 030369           23 LQELVSQFQNSTDEERKEKIVANLANFA-YDPYNYTFLRQLNVLELFLDCITEPNE-------KLVE-FGVGGICNASVD   93 (178)
Q Consensus        23 lq~LV~efq~t~~~e~keqvlanLaNfA-yDP~N~~~LrqL~vidlfld~L~~~n~-------~l~E-fAiggLcNL~~D   93 (178)
                      |=.++.+=.....-...+-++.=|+|.+ |+|.|..++||.+.++.+.-.|..+++       ++.. .++..++.+-+.
T Consensus       213 Lf~Ii~~Eg~~~Ggivv~DCL~ll~nLLr~N~sNQ~~FrEt~~i~~L~~LL~~~~~~~~W~~Qk~~N~~~~L~iIrlLv~  292 (651)
T 3grl_A          213 LLDIITEEGNSDGGIVVEDCLILLQNLLKNNNSNQNFFKEGSYIQRMKPWFEVGDENSGWSAQKVTNLHLMLQLVRVLVS  292 (651)
T ss_dssp             HHHHHHHHTGGGSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCGGGGGGGGCCCSCSSCCCHHHHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHhcCCCccchhHHHHHHHHHHHHhcCHHHHHHHHHcCCHHHHHHHhCCCccccccHHHHHHHHHHHHHHHHHHhC
Confidence            3344443333333455666677788888 899999999999999999988875422       3333 455566666555


Q ss_pred             c--------hhhHHhhhcCChhHHHHhhcCC--chhHHHHHHHHHHHhcCC--cccccc---------cchHHHHHHHHh
Q 030369           94 P--------ANAAIITKSGGIPLIIECLSSP--VRNTVNHALGALYYLCSM--STKEEI---------LKPEVVDVIRRY  152 (178)
Q Consensus        94 ~--------~nk~~I~~~gGi~~li~lLsS~--~~evv~~AlttL~~L~~~--~sr~~I---------~~p~ll~ll~~~  152 (178)
                      |        .|+..+.++|+++++++++.++  ...++..|+.++--++..  .....+         ..|.++.++..+
T Consensus       293 ~~~~~~~t~~nQ~~~~~~g~l~~Ll~ll~~~~~p~~i~~~Al~tla~~irgN~~~Q~~fa~~~vp~~~~~p~li~lL~~~  372 (651)
T 3grl_A          293 PNNPPGATSSCQKAMFQCGLLQQLCTILMATGVPADILTETINTVSEVIRGCQVNQDYFASVNAPSNPPRPAIVVLLMSM  372 (651)
T ss_dssp             TTSCHHHHHHHHHHHHHTTHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHCEESSSSCEEHHHHHHHHH
T ss_pred             CCCCCCCCHHHHHHHHHCCCHHHHHHHHccCCCCHHHHHHHHHHHHHHHhCCHHHHHHHhhccCCCCCCcChHHHHHHHH
Confidence            5        5788999999999999998655  367778888888777743  122222         148899987766


Q ss_pred             hh
Q 030369          153 AA  154 (178)
Q Consensus       153 ~~  154 (178)
                      -.
T Consensus       373 ~~  374 (651)
T 3grl_A          373 VN  374 (651)
T ss_dssp             TC
T ss_pred             hc
Confidence            43

>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16

Probab=97.04  E-value=0.041  Score=43.91  Aligned_cols=86  Identities=16%  Similarity=0.096  Sum_probs=51.6

Q ss_pred             cCChHHHHHHHHHHhhhhc-cCcccHHHhhhccChHHHHhhhcCCcHHHHHHHHHHHHhhcCCchhhHHhhhcCChhHHH
Q 030369           32 NSTDEERKEKIVANLANFA-YDPYNYTFLRQLNVLELFLDCITEPNEKLVEFGVGGICNASVDPANAAIITKSGGIPLII  110 (178)
Q Consensus        32 ~t~~~e~keqvlanLaNfA-yDP~N~~~LrqL~vidlfld~L~~~n~~l~EfAiggLcNL~~D~~nk~~I~~~gGi~~li  110 (178)
                      ..++.+.|..++..|+++. .+|...     -.+++.++..|..+++.+...|+.+|.++..          .+.++.|+
T Consensus       101 ~d~~~~vr~~a~~aL~~l~~~~~~~~-----~~~~~~L~~~l~d~~~~vR~~a~~aL~~~~~----------~~~~~~L~  165 (280)
T 1oyz_A          101 NDKSACVRATAIESTAQRCKKNPIYS-----PKIVEQSQITAFDKSTNVRRATAFAISVIND----------KATIPLLI  165 (280)
T ss_dssp             HCSCHHHHHHHHHHHHHHHHHCGGGH-----HHHHHHHHHHTTCSCHHHHHHHHHHHHTC-------------CCHHHHH
T ss_pred             cCCCHHHHHHHHHHHHHHhccCCccc-----HHHHHHHHHHhhCCCHHHHHHHHHHHHhcCC----------HHHHHHHH
Confidence            3445666666666666665 233211     1346666666766676777667766666532          13567777


Q ss_pred             HhhcCCchhHHHHHHHHHHHhc
Q 030369          111 ECLSSPVRNTVNHALGALYYLC  132 (178)
Q Consensus       111 ~lLsS~~~evv~~AlttL~~L~  132 (178)
                      ++|.+++++|...|+.+|-.+.
T Consensus       166 ~~l~d~~~~vr~~a~~aL~~~~  187 (280)
T 1oyz_A          166 NLLKDPNGDVRNWAAFAININK  187 (280)
T ss_dssp             HHHTCSSHHHHHHHHHHHHHHT
T ss_pred             HHHcCCCHHHHHHHHHHHHhhc
Confidence            7777777777777777766653

>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16

Probab=96.76  E-value=0.029  Score=44.79  Aligned_cols=59  Identities=10%  Similarity=0.099  Sum_probs=41.8

Q ss_pred             HHHHHHhhcCChHHHHHHHHHHhhhhccCcccHHHhhhccChHHHHhhhcCCcHHHHHHHHHHHHhhcCC
Q 030369           24 QELVSQFQNSTDEERKEKIVANLANFAYDPYNYTFLRQLNVLELFLDCITEPNEKLVEFGVGGICNASVD   93 (178)
Q Consensus        24 q~LV~efq~t~~~e~keqvlanLaNfAyDP~N~~~LrqL~vidlfld~L~~~n~~l~EfAiggLcNL~~D   93 (178)
                      ..|+..+.+ ++.+.|.+++..|.++. +|         ++++.++..|..+++.+...|+.+|.++..+
T Consensus        26 ~~L~~~L~~-~~~~vr~~A~~~L~~~~-~~---------~~~~~L~~~l~d~~~~vR~~A~~aL~~l~~~   84 (280)
T 1oyz_A           26 DELFRLLDD-HNSLKRISSARVLQLRG-GQ---------DAVRLAIEFCSDKNYIRRDIGAFILGQIKIC   84 (280)
T ss_dssp             HHHHHHTTC-SSHHHHHHHHHHHHHHC-CH---------HHHHHHHHHHTCSSHHHHHHHHHHHHHSCCC
T ss_pred             HHHHHHHHc-CCHHHHHHHHHHHHccC-Cc---------hHHHHHHHHHcCCCHHHHHHHHHHHHHhccc
Confidence            456666654 57778888888888876 32         4677777777777777777777777777643

>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}

Probab=96.68  E-value=0.067  Score=42.23  Aligned_cols=142  Identities=9%  Similarity=-0.027  Sum_probs=94.8

Q ss_pred             HHHHHHHHHHhhcCChHHHHHHHHHHhhhhccCc--ccHHHhhhccChHHHHhhhcCCcHHHHHHHHHHHHhhcCCchhh
Q 030369           20 LQYLQELVSQFQNSTDEERKEKIVANLANFAYDP--YNYTFLRQLNVLELFLDCITEPNEKLVEFGVGGICNASVDPANA   97 (178)
Q Consensus        20 ~~ylq~LV~efq~t~~~e~keqvlanLaNfAyDP--~N~~~LrqL~vidlfld~L~~~n~~l~EfAiggLcNL~~D~~nk   97 (178)
                      .+.+..|..-+..-++...++.++..|.-+|-..  .=..|+.  .+++.+++.+.+.++.+++.|..+|-+++......
T Consensus        55 ~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~~~~~~~--~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~~~  132 (242)
T 2qk2_A           55 GALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKRFSNYAS--ACVPSLLEKFKEKKPNVVTALREAIDAIYASTSLE  132 (242)
T ss_dssp             HHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGGGHHHHH--HHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSCHH
T ss_pred             HHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhhHHHHHH--HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCCHH
Confidence            4567777777753357788888888888888332  2223333  47999999999999999999999999997654322


Q ss_pred             HHhhhcCChhHHHHhhcCCchhHHHHHHHHHHHhcCCccccccc---chHHHHHHHHhhhhcccchhHHHhHHHHHH
Q 030369           98 AIITKSGGIPLIIECLSSPVRNTVNHALGALYYLCSMSTKEEIL---KPEVVDVIRRYAAAESVNVSFSNLAKAFLD  171 (178)
Q Consensus        98 ~~I~~~gGi~~li~lLsS~~~evv~~AlttL~~L~~~~sr~~I~---~p~ll~ll~~~~~~~~~~~~~~nla~~fL~  171 (178)
                       .+     +|.|...|.++++.+...++..+-.++.......+.   .|.++..+...-.  +.+++++..|..-+.
T Consensus       133 -~l-----l~~l~~~l~~~~~~vr~~~l~~l~~~l~~~~~~~~~~~~l~~l~p~l~~~l~--D~~~~VR~~A~~~l~  201 (242)
T 2qk2_A          133 -AQ-----QESIVESLSNKNPSVKSETALFIARALTRTQPTALNKKLLKLLTTSLVKTLN--EPDPTVRDSSAEALG  201 (242)
T ss_dssp             -HH-----HHHHHHHTTCSCHHHHHHHHHHHHHHHTTCCGGGCCHHHHHHHHHHHHHHHT--SSCHHHHHHHHHHHH
T ss_pred             -HH-----HHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHhc--CCChHHHHHHHHHHH
Confidence             22     567888888889999999999999866442111111   2344444433333  335677776655443

>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16

Probab=96.58  E-value=0.0071  Score=43.94  Aligned_cols=54  Identities=6%  Similarity=-0.034  Sum_probs=24.3

Q ss_pred             hHHHHhhhcCCcHHHHHHHHHHHHhhcCCchhhHHhhhcCChhHHHHhhcCCchhHHHHHHHHH
Q 030369           65 LELFLDCITEPNEKLVEFGVGGICNASVDPANAAIITKSGGIPLIIECLSSPVRNTVNHALGAL  128 (178)
Q Consensus        65 idlfld~L~~~n~~l~EfAiggLcNL~~D~~nk~~I~~~gGi~~li~lLsS~~~evv~~AlttL  128 (178)
                      ++.++..|..+++.+...|+-+|.++. |         .+.++.|+++|+++++.|...|+.+|
T Consensus        75 ~~~L~~~L~d~~~~VR~~A~~aL~~~~-~---------~~a~~~L~~~l~d~~~~vr~~A~~aL  128 (131)
T 1te4_A           75 VEPLIKLLEDDSGFVRSGAARSLEQIG-G---------ERVRAAMEKLAETGTGFARKVAVNYL  128 (131)
T ss_dssp             HHHHHHHHHHCCTHHHHHHHHHHHHHC-S---------HHHHHHHHHHTTSCCTHHHHHHHHHG
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHHhC-c---------HHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence            444444444444444555554444443 1         11244444444444444444444443

>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B

Probab=96.38  E-value=0.028  Score=50.85  Aligned_cols=92  Identities=10%  Similarity=0.109  Sum_probs=67.5

Q ss_pred             ChHHHHHHHHHHhhhhccCcccHHHhhhccChHHHHhhhcCCcHHHHHHHHHHHHhhcC-CchhhHHhhhcCChhHHHHh
Q 030369           34 TDEERKEKIVANLANFAYDPYNYTFLRQLNVLELFLDCITEPNEKLVEFGVGGICNASV-DPANAAIITKSGGIPLIIEC  112 (178)
Q Consensus        34 ~~~e~keqvlanLaNfAyDP~N~~~LrqL~vidlfld~L~~~n~~l~EfAiggLcNL~~-D~~nk~~I~~~gGi~~li~l  112 (178)
                      ++...|.-++-.|+++. +|.-...+     ++.+..+|..+++.+..-|+.|+.+++. +|..   +.+.+-++.+.++
T Consensus        98 ~n~~ir~~AL~~L~~i~-~~~~~~~l-----~~~l~~~L~d~~~~VRk~A~~al~~i~~~~p~~---~~~~~~~~~l~~l  168 (591)
T 2vgl_B           98 PNPLIRALAVRTMGCIR-VDKITEYL-----CEPLRKCLKDEDPYVRKTAAVCVAKLHDINAQM---VEDQGFLDSLRDL  168 (591)
T ss_dssp             SSHHHHHHHHHHHHTCC-SGGGHHHH-----HHHHHHHSSCSCHHHHHHHHHHHHHHHHSSCCC---HHHHHHHHHHHHT
T ss_pred             CCHHHHHHHHHHHHcCC-hHHHHHHH-----HHHHHHHcCCCChHHHHHHHHHHHHHHhhChhh---cccccHHHHHHHH
Confidence            45555666666666664 44433332     4668888888899999999999998863 4442   2223457899999


Q ss_pred             hcCCchhHHHHHHHHHHHhcCC
Q 030369          113 LSSPVRNTVNHALGALYYLCSM  134 (178)
Q Consensus       113 LsS~~~evv~~AlttL~~L~~~  134 (178)
                      |+++++.|+.+|+.+|+.++..
T Consensus       169 L~d~d~~V~~~A~~aL~~i~~~  190 (591)
T 2vgl_B          169 IADSNPMVVANAVAALSEISES  190 (591)
T ss_dssp             TSCSCHHHHHHHHHHHHHHTTS
T ss_pred             hCCCChhHHHHHHHHHHHHHhh
Confidence            9999999999999999999866

>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B

Probab=96.34  E-value=0.051  Score=49.14  Aligned_cols=130  Identities=16%  Similarity=0.152  Sum_probs=87.7

Q ss_pred             cCChHHHHHHHHHHhhhhcc-CcccHHHhhhccChHHHHhhhcCCcHHHHHHHHHHHHhhcCCchhhHHhhhcCChhHHH
Q 030369           32 NSTDEERKEKIVANLANFAY-DPYNYTFLRQLNVLELFLDCITEPNEKLVEFGVGGICNASVDPANAAIITKSGGIPLII  110 (178)
Q Consensus        32 ~t~~~e~keqvlanLaNfAy-DP~N~~~LrqL~vidlfld~L~~~n~~l~EfAiggLcNL~~D~~nk~~I~~~gGi~~li  110 (178)
                      .+++.+.|.-+--.+.+++- +|.-     -+-++..|..-|..+|+.++..|+-+||++. ++.....+     ++.+.
T Consensus        59 ~s~~~~~Krl~yl~l~~~~~~~~e~-----~~l~~n~l~kdL~~~n~~ir~~AL~~L~~i~-~~~~~~~l-----~~~l~  127 (591)
T 2vgl_B           59 QTDNLELKKLVYLYLMNYAKSQPDM-----AIMAVNSFVKDCEDPNPLIRALAVRTMGCIR-VDKITEYL-----CEPLR  127 (591)
T ss_dssp             SSSCHHHHHHHHHHHHHHHHHSHHH-----HHTTHHHHGGGSSSSSHHHHHHHHHHHHTCC-SGGGHHHH-----HHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHcccCchH-----HHHHHHHHHHHcCCCCHHHHHHHHHHHHcCC-hHHHHHHH-----HHHHH
Confidence            34566677666666666653 3332     1456788888899999999999999999997 55555555     57899


Q ss_pred             HhhcCCchhHHHHHHHHHHHhcCCcccccccchHHHHHHHHhhhhcccchhHHHhHHHHHHhhcc
Q 030369          111 ECLSSPVRNTVNHALGALYYLCSMSTKEEILKPEVVDVIRRYAAAESVNVSFSNLAKAFLDKHVT  175 (178)
Q Consensus       111 ~lLsS~~~evv~~AlttL~~L~~~~sr~~I~~p~ll~ll~~~~~~~~~~~~~~nla~~fL~~~~~  175 (178)
                      +||+++++.|-+.|+.+++.++.-. ...+..+.+++.+..+=..+  ++.+.--|-..|.+.+.
T Consensus       128 ~~L~d~~~~VRk~A~~al~~i~~~~-p~~~~~~~~~~~l~~lL~d~--d~~V~~~A~~aL~~i~~  189 (591)
T 2vgl_B          128 KCLKDEDPYVRKTAAVCVAKLHDIN-AQMVEDQGFLDSLRDLIADS--NPMVVANAVAALSEISE  189 (591)
T ss_dssp             HHSSCSCHHHHHHHHHHHHHHHHSS-CCCHHHHHHHHHHHHTTSCS--CHHHHHHHHHHHHHHTT
T ss_pred             HHcCCCChHHHHHHHHHHHHHHhhC-hhhcccccHHHHHHHHhCCC--ChhHHHHHHHHHHHHHh
Confidence            9999999999999999999887421 11121234556665554422  45565555555555443

>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A

Probab=96.20  E-value=0.049  Score=45.52  Aligned_cols=151  Identities=12%  Similarity=0.078  Sum_probs=96.3

Q ss_pred             HHHHHHHHHHhhcCC-hHHHHHHHHHHhhhhcc--Cccc-HHHhhhccChHHHHhhhcCC--cHHHHHHHHHHHHhhcCC
Q 030369           20 LQYLQELVSQFQNST-DEERKEKIVANLANFAY--DPYN-YTFLRQLNVLELFLDCITEP--NEKLVEFGVGGICNASVD   93 (178)
Q Consensus        20 ~~ylq~LV~efq~t~-~~e~keqvlanLaNfAy--DP~N-~~~LrqL~vidlfld~L~~~--n~~l~EfAiggLcNL~~D   93 (178)
                      .+.+..|+.-.++.+ +.+.|+.++.-|..+..  .|.- ..++.  .+++.|+.+|..+  ++.+..-|+.+++++..-
T Consensus       127 ~~ll~~L~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~--~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~  204 (462)
T 1ibr_B          127 PELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSN--EILTAIIQGMRKEEPSNNVKLAATNALLNSLEF  204 (462)
T ss_dssp             TTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCGGGTGGGHH--HHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTT
T ss_pred             HHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhCCchhhHhHHH--HHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHH
Confidence            467788888777654 78899999999998873  3321 12222  4789999999987  788999999999997421


Q ss_pred             ch--hhHHhhhcCChhHHHHhhcCCchhHHHHHHHHHHHhcCCc-ccccccch-HHHHHHHHhhhhcccchhHHHhHHHH
Q 030369           94 PA--NAAIITKSGGIPLIIECLSSPVRNTVNHALGALYYLCSMS-TKEEILKP-EVVDVIRRYAAAESVNVSFSNLAKAF  169 (178)
Q Consensus        94 ~~--nk~~I~~~gGi~~li~lLsS~~~evv~~AlttL~~L~~~~-sr~~I~~p-~ll~ll~~~~~~~~~~~~~~nla~~f  169 (178)
                      -.  .....+..--++.+.+++.++++++...++.+|..++... ..-.-..+ .++..+...-..  .+..++..|--|
T Consensus       205 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~--~~~~v~~~a~~~  282 (462)
T 1ibr_B          205 TKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKS--DIDEVALQGIEF  282 (462)
T ss_dssp             THHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGCTTTTTTTHHHHHHHHHHC--SSHHHHHHHHHH
T ss_pred             HHHhhhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC--CchHHHHHHHHH
Confidence            11  0000000001456667778888999999999998877431 11111134 566665443332  246777777777


Q ss_pred             HHhhc
Q 030369          170 LDKHV  174 (178)
Q Consensus       170 L~~~~  174 (178)
                      +...+
T Consensus       283 l~~~~  287 (462)
T 1ibr_B          283 WSNVC  287 (462)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            76655

>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}

Probab=96.19  E-value=0.02  Score=50.60  Aligned_cols=106  Identities=13%  Similarity=0.071  Sum_probs=84.9

Q ss_pred             HHhhhcCCcHHHHHHHHHHHHh-hcCCchhhHHhhhcCChhHHHHhhcCCchhHHHHHHHHHHHhcCCc-cccccc-chH
Q 030369           68 FLDCITEPNEKLVEFGVGGICN-ASVDPANAAIITKSGGIPLIIECLSSPVRNTVNHALGALYYLCSMS-TKEEIL-KPE  144 (178)
Q Consensus        68 fld~L~~~n~~l~EfAiggLcN-L~~D~~nk~~I~~~gGi~~li~lLsS~~~evv~~AlttL~~L~~~~-sr~~I~-~p~  144 (178)
                      .++.|..++..-...|+--|-. +.-|++....+++.+|+..|+++....+.++..+++++|..|+.-. .-..|. .|.
T Consensus       123 iiekL~~~~~~~lr~aLfsLk~~~q~D~~Fa~EFI~~~GL~~Li~vi~~~~gN~q~Y~L~AL~~LM~~v~Gm~gvvs~~~  202 (339)
T 3dad_A          123 ILEKLYSSSGPELRRSLFSLKQIFQEDKDLVPEFVHSEGLSCLIRVGAAADHNYQSYILRALGQLMLFVDGMLGVVAHSD  202 (339)
T ss_dssp             HHHHHHHCCHHHHHHHHHHHHHHHHTCTTHHHHHHHTTHHHHHHHHHTTSCHHHHHHHHHHHHHHTTSHHHHHHHHHCHH
T ss_pred             HHHHHhcCCcHHHHHHHHHHHHHhhcchHHHHHHHHhccHHHHHHHHHhcChHHHHHHHHHHHHHHhccccccchhCCHH
Confidence            3456666666667778888887 7789999999999999999999998889999999999999999762 333454 699


Q ss_pred             HHHHHHHhhhhcccchhHHHhHHHHHHhhcc
Q 030369          145 VVDVIRRYAAAESVNVSFSNLAKAFLDKHVT  175 (178)
Q Consensus       145 ll~ll~~~~~~~~~~~~~~nla~~fL~~~~~  175 (178)
                      +++.+-++-.+  ..+.+...|-..|+-+|.
T Consensus       203 fI~~lyslv~s--~~~~V~k~AL~LL~v~V~  231 (339)
T 3dad_A          203 TIQWLYTLCAS--LSRLVVKTALKLLLVFVE  231 (339)
T ss_dssp             HHHHHHHGGGC--SCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcC--ccHHHHHHHHHHHHHHHc
Confidence            99999777764  357788888888877764

>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*

Probab=96.15  E-value=0.033  Score=51.79  Aligned_cols=153  Identities=13%  Similarity=0.092  Sum_probs=100.1

Q ss_pred             HHHHHHHHHHhhcCChHHHHHHHHHHhhhhccC-cccHH--Hhh--hccChHHHHhhhcCCcHHHHHHHHHHHHhhcCCc
Q 030369           20 LQYLQELVSQFQNSTDEERKEKIVANLANFAYD-PYNYT--FLR--QLNVLELFLDCITEPNEKLVEFGVGGICNASVDP   94 (178)
Q Consensus        20 ~~ylq~LV~efq~t~~~e~keqvlanLaNfAyD-P~N~~--~Lr--qL~vidlfld~L~~~n~~l~EfAiggLcNL~~D~   94 (178)
                      .+.+..|+.-.++ ++...|+.++..|....-+ |....  ++.  --.+++.|+.++.++++.++..|+.+|++++...
T Consensus       127 p~ll~~L~~~l~~-~~~~~r~~al~~L~~i~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vR~~A~~aL~~~~~~~  205 (852)
T 4fdd_A          127 PDLLPKLCSLLDS-EDYNTCEGAFGALQKICEDSAEILDSDVLDRPLNIMIPKFLQFFKHSSPKIRSHAVACVNQFIISR  205 (852)
T ss_dssp             TTHHHHHHHHHSC-SSHHHHHHHHHHHHHHHHHHTTHHHHCSSSSCHHHHHHHHTTTTTCSSHHHHHHHHHHHHTTTTTT
T ss_pred             HHHHHHHHHHHcC-CCHHHHHHHHHHHHHHHHHhHHHhchhhhcchHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcc
Confidence            4577778776654 4678888888888877633 22110  000  0246888999999999999999999999887432


Q ss_pred             hhhHHhhhcCChhHHHHhhcCCchhHHHHHHHHHHHhcCCc-ccccccchHHHHHHHHhhhhcccchhHHHhHHHHHHhh
Q 030369           95 ANAAIITKSGGIPLIIECLSSPVRNTVNHALGALYYLCSMS-TKEEILKPEVVDVIRRYAAAESVNVSFSNLAKAFLDKH  173 (178)
Q Consensus        95 ~nk~~I~~~gGi~~li~lLsS~~~evv~~AlttL~~L~~~~-sr~~I~~p~ll~ll~~~~~~~~~~~~~~nla~~fL~~~  173 (178)
                      .....-.-.+-++.+.++++++++++...|+.+|..++... ..-.-..+.++..+.....+.  ...++..|.-|+...
T Consensus       206 ~~~~~~~~~~~l~~l~~~~~d~~~~vr~~a~~~L~~l~~~~~~~~~~~l~~l~~~l~~~~~~~--~~~vr~~a~e~l~~l  283 (852)
T 4fdd_A          206 TQALMLHIDSFIENLFALAGDEEPEVRKNVCRALVMLLEVRMDRLLPHMHNIVEYMLQRTQDQ--DENVALEACEFWLTL  283 (852)
T ss_dssp             CHHHHTSHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHCHHHHGGGHHHHHHHHHHHHTCS--SHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHccCC--cHHHHHHHHHHHHHH
Confidence            21111000123677788889999999999999999888431 111112345666665554433  467888888888766


Q ss_pred             cc
Q 030369          174 VT  175 (178)
Q Consensus       174 ~~  175 (178)
                      +.
T Consensus       284 ~~  285 (852)
T 4fdd_A          284 AE  285 (852)
T ss_dssp             TT
T ss_pred             hc
Confidence            54

>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*

Probab=95.87  E-value=0.059  Score=50.09  Aligned_cols=141  Identities=10%  Similarity=0.108  Sum_probs=88.7

Q ss_pred             HHHHHHHHHhhcCChHHHHHHHHHHhhhhc-cC-cccHHHhhhccChHHHHhhhcCCcHHHHHHHHHHHHhhcCCchhhH
Q 030369           21 QYLQELVSQFQNSTDEERKEKIVANLANFA-YD-PYNYTFLRQLNVLELFLDCITEPNEKLVEFGVGGICNASVDPANAA   98 (178)
Q Consensus        21 ~ylq~LV~efq~t~~~e~keqvlanLaNfA-yD-P~N~~~LrqL~vidlfld~L~~~n~~l~EfAiggLcNL~~D~~nk~   98 (178)
                      ++++..+=+.-..++...|.++..-++..| +| |..|+     +.++.++..++++++..++-|..+|..+|-+.....
T Consensus        89 ~~ik~~ll~~l~~~~~~vr~~~a~~i~~ia~~~~~~~wp-----~ll~~L~~~l~~~~~~~r~~al~~L~~i~~~~~~~~  163 (852)
T 4fdd_A           89 DFIKSECLNNIGDSSPLIRATVGILITTIASKGELQNWP-----DLLPKLCSLLDSEDYNTCEGAFGALQKICEDSAEIL  163 (852)
T ss_dssp             HHHHHHHHTTTTCSSHHHHHHHHHHHHHHHHHTTTTTCT-----THHHHHHHHHSCSSHHHHHHHHHHHHHHHHHHTTHH
T ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCccccH-----HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhHHHh
Confidence            444443333333455677777777777776 44 44443     468889999999999999999999988886532210


Q ss_pred             ---Hhh--hcCChhHHHHhhcCCchhHHHHHHHHHHHhcCCcccc-cccchHHHHHHHHhhhhcccchhHHHhHHH
Q 030369           99 ---IIT--KSGGIPLIIECLSSPVRNTVNHALGALYYLCSMSTKE-EILKPEVVDVIRRYAAAESVNVSFSNLAKA  168 (178)
Q Consensus        99 ---~I~--~~gGi~~li~lLsS~~~evv~~AlttL~~L~~~~sr~-~I~~p~ll~ll~~~~~~~~~~~~~~nla~~  168 (178)
                         ++.  -.+-+|.++++++++++++...|+.++..++...+.. .-..+.+++.+......+  +..++.-|.-
T Consensus       164 ~~~~~~~~~~~il~~l~~~l~~~~~~vR~~A~~aL~~~~~~~~~~~~~~~~~~l~~l~~~~~d~--~~~vr~~a~~  237 (852)
T 4fdd_A          164 DSDVLDRPLNIMIPKFLQFFKHSSPKIRSHAVACVNQFIISRTQALMLHIDSFIENLFALAGDE--EPEVRKNVCR  237 (852)
T ss_dssp             HHCSSSSCHHHHHHHHTTTTTCSSHHHHHHHHHHHHTTTTTTCHHHHTSHHHHHHHHHHHHTCC--CHHHHHHHHH
T ss_pred             chhhhcchHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHcCCC--CHHHHHHHHH
Confidence               100  0123677888899999999999999999877542211 112356666665544433  4555554443

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A

Probab=95.70  E-value=0.18  Score=43.48  Aligned_cols=136  Identities=15%  Similarity=0.095  Sum_probs=89.9

Q ss_pred             hhcCChHHHHHHHHHHhhhhccCcccHHHhhhccChHHHHhhhcCCcHHHHHHHHHHHHhhcCCchhhHHhhhcCChhHH
Q 030369           30 FQNSTDEERKEKIVANLANFAYDPYNYTFLRQLNVLELFLDCITEPNEKLVEFGVGGICNASVDPANAAIITKSGGIPLI  109 (178)
Q Consensus        30 fq~t~~~e~keqvlanLaNfAyDP~N~~~LrqL~vidlfld~L~~~n~~l~EfAiggLcNL~~D~~nk~~I~~~gGi~~l  109 (178)
                      +-..++.+.|+.++..|+.++..-.+..++  -.+++.+++.+..++..+..-|+.++..++.--...  .+...-+|.+
T Consensus       449 ~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~--~~llp~l~~~~~~~~~~~R~~a~~~l~~l~~~~~~~--~~~~~~~~~l  524 (588)
T 1b3u_A          449 WLVDHVYAIREAATSNLKKLVEKFGKEWAH--ATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQD--ITTKHMLPTV  524 (588)
T ss_dssp             GGGCSSHHHHHHHHHHHHHHHHHHCHHHHH--HHTHHHHHHTTTCSCHHHHHHHHHHHHHHHHHHHHH--HHHHHTHHHH
T ss_pred             HhcCCcHHHHHHHHHHHHHHHHHhCchhHH--HHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHhcCHH--HHHHHHHHHH
Confidence            334456788999999999887321111121  257788888888788888888888888775321111  1222357899


Q ss_pred             HHhhcCCchhHHHHHHHHHHHhcCCcccccccchHHHHHHHHhhhhcccchhHHHhHHHHHHh
Q 030369          110 IECLSSPVRNTVNHALGALYYLCSMSTKEEILKPEVVDVIRRYAAAESVNVSFSNLAKAFLDK  172 (178)
Q Consensus       110 i~lLsS~~~evv~~AlttL~~L~~~~sr~~I~~p~ll~ll~~~~~~~~~~~~~~nla~~fL~~  172 (178)
                      .+++++++++|...++.+|-.++..- ..+...+.++..|.+...  +.++.++..|.-=|..
T Consensus       525 ~~~l~d~~~~Vr~~a~~~l~~l~~~~-~~~~~~~~~~p~l~~l~~--d~d~~vr~~a~~al~~  584 (588)
T 1b3u_A          525 LRMAGDPVANVRFNVAKSLQKIGPIL-DNSTLQSEVKPILEKLTQ--DQDVDVKYFAQEALTV  584 (588)
T ss_dssp             HHGGGCSCHHHHHHHHHHHHHHGGGS-CHHHHHHHHHHHHHHHTT--CSSHHHHHHHHHHHHH
T ss_pred             HhhCCCCCchHHHHHHHHHHHHHHHh-chhhhHHHHHHHHHHHcC--CCchhHHHHHHHHHHH
Confidence            99999999999999999998887431 122333666777766544  4467788777655543

>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16

Probab=95.69  E-value=0.053  Score=39.15  Aligned_cols=117  Identities=11%  Similarity=0.081  Sum_probs=78.2

Q ss_pred             HHHHHHHHHhhcCChHHHHHHHHHHhhhhccCcccHHHhhhccChHHHHhhhcCCcHHHHHHHHHHHHhhcCCchhhHHh
Q 030369           21 QYLQELVSQFQNSTDEERKEKIVANLANFAYDPYNYTFLRQLNVLELFLDCITEPNEKLVEFGVGGICNASVDPANAAII  100 (178)
Q Consensus        21 ~ylq~LV~efq~t~~~e~keqvlanLaNfAyDP~N~~~LrqL~vidlfld~L~~~n~~l~EfAiggLcNL~~D~~nk~~I  100 (178)
                      +++..|+.-.++ ++.+.|..++..|+++.. +          .++.++..|..+++.++..|+-+|.++..        
T Consensus        12 ~~~~~l~~~L~~-~~~~vR~~A~~~L~~~~~-~----------~~~~L~~~L~d~~~~vR~~A~~aL~~~~~--------   71 (131)
T 1te4_A           12 SGLVPRGSHMAD-ENKWVRRDVSTALSRMGD-E----------AFEPLLESLSNEDWRIRGAAAWIIGNFQD--------   71 (131)
T ss_dssp             ---------CCS-SCCCSSSSCCSSTTSCSS-T----------THHHHHHGGGCSCHHHHHHHHHHHGGGCS--------
T ss_pred             ccHHHHHHHhcC-CCHHHHHHHHHHHHHhCc-h----------HHHHHHHHHcCCCHHHHHHHHHHHHhcCC--------
Confidence            345556655543 466677777777777642 2          25889999999999999999999999862        


Q ss_pred             hhcCChhHHHHhhcCCchhHHHHHHHHHHHhcCCcccccccchHHHHHHHHhhhhcccchhHHHhHHHHH
Q 030369          101 TKSGGIPLIIECLSSPVRNTVNHALGALYYLCSMSTKEEILKPEVVDVIRRYAAAESVNVSFSNLAKAFL  170 (178)
Q Consensus       101 ~~~gGi~~li~lLsS~~~evv~~AlttL~~L~~~~sr~~I~~p~ll~ll~~~~~~~~~~~~~~nla~~fL  170 (178)
                        .+.++.|+.+|.++++.|...|+.+|-.+.++.     ..|.+++++    ..+  ++.++..|..-|
T Consensus        72 --~~a~~~L~~~L~d~~~~VR~~A~~aL~~~~~~~-----a~~~L~~~l----~d~--~~~vr~~A~~aL  128 (131)
T 1te4_A           72 --ERAVEPLIKLLEDDSGFVRSGAARSLEQIGGER-----VRAAMEKLA----ETG--TGFARKVAVNYL  128 (131)
T ss_dssp             --HHHHHHHHHHHHHCCTHHHHHHHHHHHHHCSHH-----HHHHHHHHT----TSC--CTHHHHHHHHHG
T ss_pred             --HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCcHH-----HHHHHHHHH----hCC--CHHHHHHHHHHH
Confidence              134899999999999999999999999886431     135555554    222  456766665444

>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1

Probab=95.30  E-value=0.27  Score=44.81  Aligned_cols=73  Identities=7%  Similarity=0.091  Sum_probs=57.1

Q ss_pred             cChHHHHhhhcCCcHHHHHHHHHHHHhhcCCchhhHHhhhcCChhHHHHhhcCCchhHHHHHHHHHHHhcCCccccc
Q 030369           63 NVLELFLDCITEPNEKLVEFGVGGICNASVDPANAAIITKSGGIPLIIECLSSPVRNTVNHALGALYYLCSMSTKEE  139 (178)
Q Consensus        63 ~vidlfld~L~~~n~~l~EfAiggLcNL~~D~~nk~~I~~~gGi~~li~lLsS~~~evv~~AlttL~~L~~~~sr~~  139 (178)
                      .+++.+...|.++++.+...|+.+|+.++.-   ...++. ...+.++.||+++++.+...|+++|+.++++.+-..
T Consensus       313 ~a~~~L~~~L~~~d~~vr~~aL~~L~~i~~~---~p~~~~-~~~~~i~~~l~d~d~~Ir~~alelL~~l~~~~nv~~  385 (618)
T 1w63_A          313 LAINILGRFLLNNDKNIRYVALTSLLKTVQT---DHNAVQ-RHRSTIVDCLKDLDVSIKRRAMELSFALVNGNNIRG  385 (618)
T ss_dssp             HHHHHHHHHHTCSSTTTHHHHHHHHHHHHHH---HHHHHG-GGHHHHHHGGGSSCHHHHHHHHHHHHHHCCSSSTHH
T ss_pred             HHHHHHHHHHhCCCCchHHHHHHHHHHHHhh---CHHHHH-HHHHHHHHHccCCChhHHHHHHHHHHHHcccccHHH
Confidence            4677777888888889999999999888632   222232 357899999999999999999999999998765433

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A

Probab=95.10  E-value=0.11  Score=44.89  Aligned_cols=69  Identities=10%  Similarity=0.031  Sum_probs=48.3

Q ss_pred             cChHHHHhhhcCCcHHHHHHHHHHHHhhcCCchhhHHhhhcCChhHHHHhhcCCchhHHHHHHHHHHHhcC
Q 030369           63 NVLELFLDCITEPNEKLVEFGVGGICNASVDPANAAIITKSGGIPLIIECLSSPVRNTVNHALGALYYLCS  133 (178)
Q Consensus        63 ~vidlfld~L~~~n~~l~EfAiggLcNL~~D~~nk~~I~~~gGi~~li~lLsS~~~evv~~AlttL~~L~~  133 (178)
                      .+++.+...+..+++.+.+.|+.+|..++.........  ..-+|.+..+++++++++...|+.+|-.+..
T Consensus       164 ~l~~~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~~~~--~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~  232 (588)
T 1b3u_A          164 ELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLELDNVK--SEIIPMFSNLASDEQDSVRLLAVEACVNIAQ  232 (588)
T ss_dssp             HHHHHHHHHHTCSCHHHHHHHHHHHHHHHHTSCHHHHH--HTHHHHHHHHHTCSCHHHHTTHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcHHhHH--HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHH
Confidence            35677777777788888888888888886443222221  2336788888888888888888888776653

>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}

Probab=94.39  E-value=0.56  Score=38.09  Aligned_cols=142  Identities=9%  Similarity=0.074  Sum_probs=89.9

Q ss_pred             HHHHHHHHHHhhcCChHHHHHHHHHHhhhhc---c-CcccHHHhhhccChHHHHhhhcCCcHHHHHHHHHHHHhhcC--C
Q 030369           20 LQYLQELVSQFQNSTDEERKEKIVANLANFA---Y-DPYNYTFLRQLNVLELFLDCITEPNEKLVEFGVGGICNASV--D   93 (178)
Q Consensus        20 ~~ylq~LV~efq~t~~~e~keqvlanLaNfA---y-DP~N~~~LrqL~vidlfld~L~~~n~~l~EfAiggLcNL~~--D   93 (178)
                      .+.++.|..-...-++.-.++..+-.|.-+|   - +....+|...  +++..++.+.+....+++.|..+|-+++.  +
T Consensus        59 ~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~~y~~~--llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~  136 (249)
T 2qk1_A           59 SNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSKDYVSL--VFTPLLDRTKEKKPSVIEAIRKALLTICKYYD  136 (249)
T ss_dssp             HHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCHHHHHH--HHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSC
T ss_pred             HHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccHHHHHH--HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcc
Confidence            4667777776633335555565555555555   3 3333345554  69999999999999999998888877753  4


Q ss_pred             chhhHH--hhhcCChhHHHHhhcCCchhHHHHHHHHHHHhcCCccc--c-------cccchHHHHHHHHhhhhcccchhH
Q 030369           94 PANAAI--ITKSGGIPLIIECLSSPVRNTVNHALGALYYLCSMSTK--E-------EILKPEVVDVIRRYAAAESVNVSF  162 (178)
Q Consensus        94 ~~nk~~--I~~~gGi~~li~lLsS~~~evv~~AlttL~~L~~~~sr--~-------~I~~p~ll~ll~~~~~~~~~~~~~  162 (178)
                      |.. .+  +-  .-++.|...|.++++.+...++.+|..++.....  .       .-..|.+.++|    .  +.++.+
T Consensus       137 ~~~-~~~~l~--~ll~~l~~~l~~k~~~vk~~al~~l~~~~~~~~~~~~~l~~~l~~~iip~l~~~l----~--D~~~~V  207 (249)
T 2qk1_A          137 PLA-SSGRNE--DMLKDILEHMKHKTPQIRMECTQLFNASMKEEKDGYSTLQRYLKDEVVPIVIQIV----N--DTQPAI  207 (249)
T ss_dssp             TTC-TTCTTH--HHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCCSCSHHHHHHHTTTHHHHHHHHH----T--CSSHHH
T ss_pred             ccc-cCCcHH--HHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHHHHHHh----c--CCCHHH
Confidence            411 11  11  1256778888888999999999999888744211  1       12245555555    3  335678


Q ss_pred             HHhHHHHHHh
Q 030369          163 SNLAKAFLDK  172 (178)
Q Consensus       163 ~nla~~fL~~  172 (178)
                      ++.|.--|..
T Consensus       208 R~aA~~~l~~  217 (249)
T 2qk1_A          208 RTIGFESFAI  217 (249)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            7777665554

>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}

Probab=94.34  E-value=0.36  Score=39.27  Aligned_cols=133  Identities=10%  Similarity=0.135  Sum_probs=84.9

Q ss_pred             CChHHHHHHHHHHhhh-hc-cCc------ccHHHhhhccChHHHHhhh-cCCcHHHHHHHHHHHHhhcCC---chhh-HH
Q 030369           33 STDEERKEKIVANLAN-FA-YDP------YNYTFLRQLNVLELFLDCI-TEPNEKLVEFGVGGICNASVD---PANA-AI   99 (178)
Q Consensus        33 t~~~e~keqvlanLaN-fA-yDP------~N~~~LrqL~vidlfld~L-~~~n~~l~EfAiggLcNL~~D---~~nk-~~   99 (178)
                      +++-..|.+++.+|+. +. --|      .+|.     ++++.+...| ...|..+++-|+-+|..++..   +... .+
T Consensus        27 s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~-----~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~~y  101 (249)
T 2qk1_A           27 SSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYS-----NLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSKDY  101 (249)
T ss_dssp             CSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCH-----HHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCHHH
T ss_pred             cCCHHHHHHHHHHHHHHHHhcCCccccCcccHH-----HHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccHHH
Confidence            4455555567777888 75 212      2222     4578888889 577988888888888777632   2233 44


Q ss_pred             hhhcCChhHHHHhhcCCchhHHHHHHHHHHHhcCCccccccc--chHHHHHHHHhhhhcccchhHHHhHHHHHHhhc
Q 030369          100 ITKSGGIPLIIECLSSPVRNTVNHALGALYYLCSMSTKEEIL--KPEVVDVIRRYAAAESVNVSFSNLAKAFLDKHV  174 (178)
Q Consensus       100 I~~~gGi~~li~lLsS~~~evv~~AlttL~~L~~~~sr~~I~--~p~ll~ll~~~~~~~~~~~~~~nla~~fL~~~~  174 (178)
                      ...  =+|.|+..+.+..+.|+..+..++-.++...+.....  .+.+++.|...=.+.  |++++--|-.||.+.+
T Consensus       102 ~~~--llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l~~k--~~~vk~~al~~l~~~~  174 (249)
T 2qk1_A          102 VSL--VFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKHK--TPQIRMECTQLFNASM  174 (249)
T ss_dssp             HHH--HHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHTTCS--SHHHHHHHHHHHHHHH
T ss_pred             HHH--HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccccccCCcHHHHHHHHHHHHcCC--ChHHHHHHHHHHHHHH
Confidence            432  2789999998888888777777776666322112222  456666665544433  6788888888877765

>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}

Probab=94.02  E-value=0.72  Score=36.16  Aligned_cols=136  Identities=13%  Similarity=0.121  Sum_probs=87.8

Q ss_pred             HHHHhhcCChHHHHHHHHHHhhhhccC-cc-cHHHhhhccChHHHHhhhc-CCcHHHHHHHHHHHHhhcCC--chhhHHh
Q 030369           26 LVSQFQNSTDEERKEKIVANLANFAYD-PY-NYTFLRQLNVLELFLDCIT-EPNEKLVEFGVGGICNASVD--PANAAII  100 (178)
Q Consensus        26 LV~efq~t~~~e~keqvlanLaNfAyD-P~-N~~~LrqL~vidlfld~L~-~~n~~l~EfAiggLcNL~~D--~~nk~~I  100 (178)
                      +....+ +++-..|..++..|....-. |. --..+  -++++.+...|. ..|..+++-|..+|..++..  +....++
T Consensus        20 l~~~l~-s~~w~~R~~a~~~L~~l~~~~~~~~~~~~--~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~~~~~~   96 (242)
T 2qk2_A           20 FYDKLE-EKKWTLRKESLEVLEKLLTDHPKLENGEY--GALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKRFSNYA   96 (242)
T ss_dssp             HHHHHT-CSSHHHHHHHHHHHHHHHHHCSSBCCCCC--HHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGGGHHHH
T ss_pred             HHhhhc-cCCHHHHHHHHHHHHHHHccCCCCCCCCH--HHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence            444444 44555666667777776633 22 11112  256888899995 88999988888888877733  3334444


Q ss_pred             hhcCChhHHHHhhcCCchhHHHHHHHHHHHhcCCcccccccchHHHHHHHHhhhhcccchhHHHhHHHHHHhh
Q 030369          101 TKSGGIPLIIECLSSPVRNTVNHALGALYYLCSMSTKEEILKPEVVDVIRRYAAAESVNVSFSNLAKAFLDKH  173 (178)
Q Consensus       101 ~~~gGi~~li~lLsS~~~evv~~AlttL~~L~~~~sr~~I~~p~ll~ll~~~~~~~~~~~~~~nla~~fL~~~  173 (178)
                      ..  =+|.|+.++.++++.|...|..+|..++...+     .+.+++.+...-.+.  |++++--+.-||.+.
T Consensus        97 ~~--ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~-----~~~ll~~l~~~l~~~--~~~vr~~~l~~l~~~  160 (242)
T 2qk2_A           97 SA--CVPSLLEKFKEKKPNVVTALREAIDAIYASTS-----LEAQQESIVESLSNK--NPSVKSETALFIARA  160 (242)
T ss_dssp             HH--HHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSC-----HHHHHHHHHHHTTCS--CHHHHHHHHHHHHHH
T ss_pred             HH--HHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCC-----HHHHHHHHHHHHcCC--ChHHHHHHHHHHHHH
Confidence            32  27899999999999999999999998875422     234555554443433  677777777777664

>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A

Probab=93.74  E-value=0.5  Score=43.45  Aligned_cols=108  Identities=13%  Similarity=0.124  Sum_probs=79.4

Q ss_pred             CCCChHHHHHHHHH----------------HhhcCChHHHHHHHHHHhhhhc-cCcccHHHhhhccChHHHHhhhcCCcH
Q 030369           15 SGTPRLQYLQELVS----------------QFQNSTDEERKEKIVANLANFA-YDPYNYTFLRQLNVLELFLDCITEPNE   77 (178)
Q Consensus        15 ~g~~R~~ylq~LV~----------------efq~t~~~e~keqvlanLaNfA-yDP~N~~~LrqL~vidlfld~L~~~n~   77 (178)
                      ++-.|.+|++.|+-                +.=.|++.+.|.=+--.+.+++ .||   +.+  +=++..|.--|..+|+
T Consensus        51 ~~~~k~~~l~Kli~l~~~G~d~s~~~~~vvkl~~s~~~~~Krl~YL~l~~~~~~~~---e~~--~L~iN~l~kDl~~~n~  125 (621)
T 2vgl_A           51 DGYSKKKYVCKLLFIFLLGHDIDFGHMEAVNLLSSNRYTEKQIGYLFISVLVNSNS---ELI--RLINNAIKNDLASRNP  125 (621)
T ss_dssp             CHHHHHHHHHHHHHHHHHSCCCCSCHHHHHHGGGCSCHHHHHHHHHHHHHSCCCCH---HHH--HHHHHHHHHHHHSCCH
T ss_pred             CHHHHHHHHHHHHHHHHcCCCCchhHHHHHHHhcCCCHHHHHHHHHHHHHHccCCc---HHH--HHHHHHHHHhcCCCCH
Confidence            34457777777653                2334567777877777788877 334   222  3456777777788899


Q ss_pred             HHHHHHHHHHHhhcCCchhhHHhhhcCChhHHHHhh--cCCchhHHHHHHHHHHHhcC
Q 030369           78 KLVEFGVGGICNASVDPANAAIITKSGGIPLIIECL--SSPVRNTVNHALGALYYLCS  133 (178)
Q Consensus        78 ~l~EfAiggLcNL~~D~~nk~~I~~~gGi~~li~lL--sS~~~evv~~AlttL~~L~~  133 (178)
                      .++-.|+-+||++. +|...+.+     ++.|.+||  +++++-|-+.|+.+++.+..
T Consensus       126 ~ir~lALr~L~~i~-~~e~~~~l-----~~~v~~~l~~~d~~~~VRK~A~~al~kl~~  177 (621)
T 2vgl_A          126 TFMGLALHCIANVG-SREMAEAF-----AGEIPKILVAGDTMDSVKQSAALCLLRLYR  177 (621)
T ss_dssp             HHHHHHHHHHHHHC-CHHHHHHH-----TTHHHHHHHCSSSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhccC-CHHHHHHH-----HHHHHHHHhCCCCCHHHHHHHHHHHHHHHH
Confidence            99999999999995 45555555     68999999  88899999999999987773

>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A

Probab=93.63  E-value=0.26  Score=41.04  Aligned_cols=149  Identities=12%  Similarity=0.163  Sum_probs=89.9

Q ss_pred             HHHHHHHHHHhhcCChHHHHHHHHHHhhhhccC-c-ccHHHhhhccChHHHHhhhcCCcHHHHHHHHHHHHhhcCCch--
Q 030369           20 LQYLQELVSQFQNSTDEERKEKIVANLANFAYD-P-YNYTFLRQLNVLELFLDCITEPNEKLVEFGVGGICNASVDPA--   95 (178)
Q Consensus        20 ~~ylq~LV~efq~t~~~e~keqvlanLaNfAyD-P-~N~~~LrqL~vidlfld~L~~~n~~l~EfAiggLcNL~~D~~--   95 (178)
                      .+|+-..+.+.-.+++.+.|+.++..|..++.. | .=.+++.+ ++++.++.++...++.+...|+..+.++|-...  
T Consensus       215 ~~~l~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~~~-~l~~~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~  293 (462)
T 1ibr_B          215 RHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGP-ALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDL  293 (462)
T ss_dssp             HHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGCTTTTTT-THHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHH
Confidence            356333444455567889999999999998822 2 11234443 778899999998888899888888888764321  


Q ss_pred             -----------------hhHHhh--hcCChhHHHHhhcCC-------chhHHHHHHHHHHHhcCCcccccccchHHHHHH
Q 030369           96 -----------------NAAIIT--KSGGIPLIIECLSSP-------VRNTVNHALGALYYLCSMSTKEEILKPEVVDVI  149 (178)
Q Consensus        96 -----------------nk~~I~--~~gGi~~li~lLsS~-------~~evv~~AlttL~~L~~~~sr~~I~~p~ll~ll  149 (178)
                                       ...++.  -..-+|.+.++|...       +..+-..|..+|-.|+..-.  +-..|.++..+
T Consensus       294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~l~~~l~~~d~d~~~~~~~~r~~a~~~L~~l~~~~~--~~~~~~~~~~l  371 (462)
T 1ibr_B          294 AIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCE--DDIVPHVLPFI  371 (462)
T ss_dssp             HHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTT--TTHHHHHHHHH
T ss_pred             HHhcccccccCCCccchhHHHHHHHhhhccHHHHHHHHhcccccccccchHHHHHHHHHHHHHHhcc--HHHHHHHHHHH
Confidence                             111110  012346666777543       23455667777777664311  23347777777


Q ss_pred             HHhhhhcccchhHHHhHHHHHHhh
Q 030369          150 RRYAAAESVNVSFSNLAKAFLDKH  173 (178)
Q Consensus       150 ~~~~~~~~~~~~~~nla~~fL~~~  173 (178)
                      ...-.+.  +.+++.-|-..|-..
T Consensus       372 ~~~l~~~--~~~~r~aal~~l~~l  393 (462)
T 1ibr_B          372 KEHIKNP--DWRYRDAAVMAFGCI  393 (462)
T ss_dssp             HHHTTCS--SHHHHHHHHHHHHHT
T ss_pred             HHHhcCC--ChHHHHHHHHHHHHH
Confidence            6655433  567776666555443

>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A

Probab=93.49  E-value=0.86  Score=41.30  Aligned_cols=137  Identities=14%  Similarity=0.127  Sum_probs=81.9

Q ss_pred             HHHHHhhcCChHHHHHHHHHHhhhhc-cC-cc-cHHHhhhccChHHHHhhhcCC-cHHHHHHHHHHHHhhcCC--chh--
Q 030369           25 ELVSQFQNSTDEERKEKIVANLANFA-YD-PY-NYTFLRQLNVLELFLDCITEP-NEKLVEFGVGGICNASVD--PAN--   96 (178)
Q Consensus        25 ~LV~efq~t~~~e~keqvlanLaNfA-yD-P~-N~~~LrqL~vidlfld~L~~~-n~~l~EfAiggLcNL~~D--~~n--   96 (178)
                      .|+.-.. +++...|.++...|+..+ +| |. .|+.     +++.+++.+..+ ++..++.|+-.+..+|-+  +..  
T Consensus        99 ~ll~~l~-~~~~~vr~~~~~~l~~i~~~~~p~~~w~~-----ll~~L~~~l~~~~~~~~r~~al~~l~~l~~~~~~~~~~  172 (861)
T 2bpt_A           99 NALTALV-SIEPRIANAAAQLIAAIADIELPHGAWPE-----LMKIMVDNTGAEQPENVKRASLLALGYMCESADPQSQA  172 (861)
T ss_dssp             HHHHHHT-CSSHHHHHHHHHHHHHHHHHHGGGTCCHH-----HHHHHHHHTSTTSCHHHHHHHHHHHHHHHHTSSTTSST
T ss_pred             HHHHHHC-CCchHHHHHHHHHHHHHHHhhCcccccHH-----HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCChhhhH
Confidence            4444443 344566777766666665 44 53 6654     578899999988 899999999988888754  221  


Q ss_pred             -hHHhhhcCChhHHHHhhcCC--chhHHHHHHHHHHHhcCC-c-c-cccccchHHHHHHHHhhhhcccchhHHHhHHHHH
Q 030369           97 -AAIITKSGGIPLIIECLSSP--VRNTVNHALGALYYLCSM-S-T-KEEILKPEVVDVIRRYAAAESVNVSFSNLAKAFL  170 (178)
Q Consensus        97 -k~~I~~~gGi~~li~lLsS~--~~evv~~AlttL~~L~~~-~-s-r~~I~~p~ll~ll~~~~~~~~~~~~~~nla~~fL  170 (178)
                       ..++-  .=++.+.+++.++  ++++...|+.++..++.- . . ......+.+++.+.....+.  +.+++..|.--|
T Consensus       173 ~~~~~~--~ll~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~--~~~~r~~a~~~l  248 (861)
T 2bpt_A          173 LVSSSN--NILIAIVQGAQSTETSKAVRLAALNALADSLIFIKNNMEREGERNYLMQVVCEATQAE--DIEVQAAAFGCL  248 (861)
T ss_dssp             TGGGHH--HHHHHHHHHHSTTCCCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHHTCS--CHHHHHHHHHHH
T ss_pred             HHHHHH--HHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHccChhHHHHHHHHHHHHhcCC--CHHHHHHHHHHH
Confidence             11111  1145667778776  789999999999876532 1 0 00001234555555544433  456665554443


Q ss_pred             H
Q 030369          171 D  171 (178)
Q Consensus       171 ~  171 (178)
                      .
T Consensus       249 ~  249 (861)
T 2bpt_A          249 C  249 (861)
T ss_dssp             H
T ss_pred             H
Confidence            3

>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A

Probab=93.41  E-value=0.33  Score=46.94  Aligned_cols=104  Identities=10%  Similarity=0.091  Sum_probs=69.1

Q ss_pred             HHHHHHHhhcCChHHHHHHHHHHhhhhccCc-ccHHHhhhccChHHHHhhhcCCcHHHHHHHHHHHHhhcCC--chhhHH
Q 030369           23 LQELVSQFQNSTDEERKEKIVANLANFAYDP-YNYTFLRQLNVLELFLDCITEPNEKLVEFGVGGICNASVD--PANAAI   99 (178)
Q Consensus        23 lq~LV~efq~t~~~e~keqvlanLaNfAyDP-~N~~~LrqL~vidlfld~L~~~n~~l~EfAiggLcNL~~D--~~nk~~   99 (178)
                      |..|.+..+. ++.+.|.+++..|.|.--.| .....-..-.+++.+++.|..+++.++..|+-+|++++--  +.....
T Consensus         8 l~~lL~~l~s-~d~~~R~~A~~~L~~~l~~~~~~~~~~~~~~il~~Ll~~L~d~~~~vR~~A~~~L~~l~~~~~~~~~~~   86 (1230)
T 1u6g_C            8 ISNLLEKMTS-SDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKEYQVET   86 (1230)
T ss_dssp             HHHHHHHTTC-SSHHHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred             HHHHHHhcCC-CCHhHHHHHHHHHHHHHcccccCCChhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCCHHHHHH
Confidence            5566666554 58888999999999875332 2211111226788899999988999999999999998632  222333


Q ss_pred             hhhcCChhHHHHhhcCCchhHHHHHHHHHHHhc
Q 030369          100 ITKSGGIPLIIECLSSPVRNTVNHALGALYYLC  132 (178)
Q Consensus       100 I~~~gGi~~li~lLsS~~~evv~~AlttL~~L~  132 (178)
                      |     ++.+...|.++++.+...|..+|-.++
T Consensus        87 i-----~~~Ll~~l~d~~~~vR~~a~~~L~~i~  114 (1230)
T 1u6g_C           87 I-----VDTLCTNMLSDKEQLRDISSIGLKTVI  114 (1230)
T ss_dssp             H-----HHHHHHHTTCSSSHHHHHHHHHHHHHH
T ss_pred             H-----HHHHHHHhcCCcHHHHHHHHHHHHHHH
Confidence            3     567788888887766555555554443

>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A

Probab=93.28  E-value=1.2  Score=40.26  Aligned_cols=98  Identities=11%  Similarity=0.116  Sum_probs=68.5

Q ss_pred             cCChHHHHHHHHHHhhhhccCc--cc-HHHhhhccChHHHHhhhcCCcHHHHHHHHHHHHhhcCCch----hhHHhhhcC
Q 030369           32 NSTDEERKEKIVANLANFAYDP--YN-YTFLRQLNVLELFLDCITEPNEKLVEFGVGGICNASVDPA----NAAIITKSG  104 (178)
Q Consensus        32 ~t~~~e~keqvlanLaNfAyDP--~N-~~~LrqL~vidlfld~L~~~n~~l~EfAiggLcNL~~D~~----nk~~I~~~g  104 (178)
                      .+++...|+.++..|.+.+..+  .. .+++.  .+++.++..+..+++.+++-|.-+|..++..-.    ...++-  .
T Consensus       379 ~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l~--~il~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~--~  454 (861)
T 2bpt_A          379 TADNWRNREAAVMAFGSIMDGPDKVQRTYYVH--QALPSILNLMNDQSLQVKETTAWCIGRIADSVAESIDPQQHLP--G  454 (861)
T ss_dssp             TCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHH--HHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHGGGSCTTTTHH--H
T ss_pred             CCCChhHHHHHHHHHHHHHcCCCHHHHHHHHH--HHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhhhhcCCHHHHH--H
Confidence            3456788999999999999543  22 23333  578999999998999988877777777663311    111221  2


Q ss_pred             ChhHHHHhhcCCchhHHHHHHHHHHHhcCC
Q 030369          105 GIPLIIECLSSPVRNTVNHALGALYYLCSM  134 (178)
Q Consensus       105 Gi~~li~lLsS~~~evv~~AlttL~~L~~~  134 (178)
                      -+|.++++|+++ +.+...|..++.+++..
T Consensus       455 ~l~~l~~~l~~~-~~v~~~a~~al~~l~~~  483 (861)
T 2bpt_A          455 VVQACLIGLQDH-PKVATNCSWTIINLVEQ  483 (861)
T ss_dssp             HHHHHHHHHTSC-HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhccC-hHHHHHHHHHHHHHHHh
Confidence            267888889876 88888888888888743

>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}

Probab=92.62  E-value=0.8  Score=40.31  Aligned_cols=110  Identities=12%  Similarity=0.082  Sum_probs=87.3

Q ss_pred             HHHHHHhhcCChHHHHHHHHHHhhh-hccCcccHHHhhhccChHHHHhhhcCCcHHHHHHHHHHHHhhcCCchhhHHhh-
Q 030369           24 QELVSQFQNSTDEERKEKIVANLAN-FAYDPYNYTFLRQLNVLELFLDCITEPNEKLVEFGVGGICNASVDPANAAIIT-  101 (178)
Q Consensus        24 q~LV~efq~t~~~e~keqvlanLaN-fAyDP~N~~~LrqL~vidlfld~L~~~n~~l~EfAiggLcNL~~D~~nk~~I~-  101 (178)
                      +++++-.+.++ .+.+..++-.|+. |+-|+.=-.-.-+.+-+..++..+.+.+.+.+-|+..++-++-.--.--.-|+ 
T Consensus       121 ~~iiekL~~~~-~~~lr~aLfsLk~~~q~D~~Fa~EFI~~~GL~~Li~vi~~~~gN~q~Y~L~AL~~LM~~v~Gm~gvvs  199 (339)
T 3dad_A          121 NAILEKLYSSS-GPELRRSLFSLKQIFQEDKDLVPEFVHSEGLSCLIRVGAAADHNYQSYILRALGQLMLFVDGMLGVVA  199 (339)
T ss_dssp             HHHHHHHHHCC-HHHHHHHHHHHHHHHHTCTTHHHHHHHTTHHHHHHHHHTTSCHHHHHHHHHHHHHHTTSHHHHHHHHH
T ss_pred             HHHHHHHhcCC-cHHHHHHHHHHHHHhhcchHHHHHHHHhccHHHHHHHHHhcChHHHHHHHHHHHHHHhccccccchhC
Confidence            35666667554 4557778999999 99898766667777889999999999999999999999999965533332333 


Q ss_pred             hcCChhHHHHhhcCCchhHHHHHHHHHHHhcCC
Q 030369          102 KSGGIPLIIECLSSPVRNTVNHALGALYYLCSM  134 (178)
Q Consensus       102 ~~gGi~~li~lLsS~~~evv~~AlttL~~L~~~  134 (178)
                      ....|.+|..+++|.+..|++.|+..|..+|..
T Consensus       200 ~~~fI~~lyslv~s~~~~V~k~AL~LL~v~V~~  232 (339)
T 3dad_A          200 HSDTIQWLYTLCASLSRLVVKTALKLLLVFVEY  232 (339)
T ss_dssp             CHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHcCccHHHHHHHHHHHHHHHcc
Confidence            455688999999999999999999999888744

>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A

Probab=92.28  E-value=0.52  Score=43.36  Aligned_cols=110  Identities=11%  Similarity=0.067  Sum_probs=78.4

Q ss_pred             CChHHHHHHHHHHhhhhccCcccHHHhhhccChHHHHhhh--cCCcHHHHHHHHHHHHhhc-CCchhhHHhhhcCChhHH
Q 030369           33 STDEERKEKIVANLANFAYDPYNYTFLRQLNVLELFLDCI--TEPNEKLVEFGVGGICNAS-VDPANAAIITKSGGIPLI  109 (178)
Q Consensus        33 t~~~e~keqvlanLaNfAyDP~N~~~LrqL~vidlfld~L--~~~n~~l~EfAiggLcNL~-~D~~nk~~I~~~gGi~~l  109 (178)
                      ++++-.+--++-.|+|+. +|.   ...  .+++....+|  ...++.+...|+.|+.+++ .+|.   .+...+-++.+
T Consensus       122 ~~n~~ir~lALr~L~~i~-~~e---~~~--~l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~~p~---~~~~~~~~~~l  192 (621)
T 2vgl_A          122 SRNPTFMGLALHCIANVG-SRE---MAE--AFAGEIPKILVAGDTMDSVKQSAALCLLRLYRTSPD---LVPMGDWTSRV  192 (621)
T ss_dssp             SCCHHHHHHHHHHHHHHC-CHH---HHH--HHTTHHHHHHHCSSSCHHHHHHHHHHHHHHHHHCGG---GCCCCSCHHHH
T ss_pred             CCCHHHHHHHHHHhhccC-CHH---HHH--HHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhChh---hcCchhHHHHH
Confidence            346666777788888885 343   222  5678888999  8889999999999999996 3443   33224667899


Q ss_pred             HHhhcCCchhHHHHHHHHHHHhcCCcccccc--cchHHHHHHHHh
Q 030369          110 IECLSSPVRNTVNHALGALYYLCSMSTKEEI--LKPEVVDVIRRY  152 (178)
Q Consensus       110 i~lLsS~~~evv~~AlttL~~L~~~~sr~~I--~~p~ll~ll~~~  152 (178)
                      .++|+++++.|+.+|+.+++.++... ...+  ..|.+++.|.++
T Consensus       193 ~~lL~d~d~~V~~~a~~~l~~i~~~~-~~~~~~~~~~~~~~L~~l  236 (621)
T 2vgl_A          193 VHLLNDQHLGVVTAATSLITTLAQKN-PEEFKTSVSLAVSRLSRI  236 (621)
T ss_dssp             HHHTTCSCHHHHHHHHHHHHHHHHHC-HHHHTTHHHHHHHHHHHH
T ss_pred             HHHhCCCCccHHHHHHHHHHHHHHhC-hHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999987431 1112  245555555543

>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1

Probab=91.53  E-value=0.76  Score=41.89  Aligned_cols=65  Identities=11%  Similarity=0.015  Sum_probs=37.1

Q ss_pred             hHHHHhhhcCCcHHHHHHHHHHHHhhc-CCchhhHHhhhcCChhHHHHhhcCCchhHHHHHHHHHHHhcCC
Q 030369           65 LELFLDCITEPNEKLVEFGVGGICNAS-VDPANAAIITKSGGIPLIIECLSSPVRNTVNHALGALYYLCSM  134 (178)
Q Consensus        65 idlfld~L~~~n~~l~EfAiggLcNL~-~D~~nk~~I~~~gGi~~li~lLsS~~~evv~~AlttL~~L~~~  134 (178)
                      ++.+..+|..+++.+..-|+.|+.+++ .+|....     +-++.+..+|+++++.|+.+|+.+|+.++..
T Consensus       144 ~~~l~~~L~~~~~~VRk~A~~al~~l~~~~p~~v~-----~~~~~l~~lL~D~d~~V~~~Al~~L~~i~~~  209 (618)
T 1w63_A          144 AGEVEKLLKTSNSYLRKKAALCAVHVIRKVPELME-----MFLPATKNLLNEKNHGVLHTSVVLLTEMCER  209 (618)
T ss_dssp             HHHHHHHHHSCCHHHHHHHHHHHHHHHHHCGGGGG-----GGGGGTTTSTTCCCHHHHHHHHHHHHHHCCS
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHHHHHHChHHHH-----HHHHHHHHHhCCCCHhHHHHHHHHHHHHHHh
Confidence            444555555555555555555555554 2332221     2355666667776777777777777777644

>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}

Probab=91.45  E-value=1.5  Score=35.39  Aligned_cols=104  Identities=16%  Similarity=0.175  Sum_probs=61.0

Q ss_pred             cChHHHHhhhcCCcHHHHHHHHHHHHhhcCC--ch--hhHH--hhhcCChhHHH-HhhcCCchhHHHHHHHHHHHhcCCc
Q 030369           63 NVLELFLDCITEPNEKLVEFGVGGICNASVD--PA--NAAI--ITKSGGIPLII-ECLSSPVRNTVNHALGALYYLCSMS  135 (178)
Q Consensus        63 ~vidlfld~L~~~n~~l~EfAiggLcNL~~D--~~--nk~~--I~~~gGi~~li-~lLsS~~~evv~~AlttL~~L~~~~  135 (178)
                      ..+++|--.+.+.|..+++-|+-+|+.++.-  +.  ....  ..-..-+|.|+ +||.++.+.++..|+.++.-++...
T Consensus        55 ~~~~~lkk~l~DsN~~v~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~  134 (278)
T 4ffb_C           55 RDPTLFAQYITDSNVVAQEQAIVALNSLIDAFASSSLKNAHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLD  134 (278)
T ss_dssp             SCTHHHHHHTTCSSHHHHHHHHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTS
T ss_pred             HHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhc
Confidence            5567787888899999999999998877532  11  1111  11122356555 5788888888888888877665221


Q ss_pred             ccccccchHHHHHHHHhhhhcccchhHHHhHHHHHHh
Q 030369          136 TKEEILKPEVVDVIRRYAAAESVNVSFSNLAKAFLDK  172 (178)
Q Consensus       136 sr~~I~~p~ll~ll~~~~~~~~~~~~~~nla~~fL~~  172 (178)
                          .....+++.+...-.+  .|++++--+-.||.+
T Consensus       135 ----~~~~~~~e~l~~~l~~--Knpkv~~~~l~~l~~  165 (278)
T 4ffb_C          135 ----TSITQSVELVIPFFEK--KLPKLIAAAANCVYE  165 (278)
T ss_dssp             ----SSSHHHHHHHGGGGGC--SCHHHHHHHHHHHHH
T ss_pred             ----CcHHHHHHHHHHHHhc--cCHHHHHHHHHHHHH
Confidence                1123344444433332  255555555555443

>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A

Probab=91.25  E-value=1.4  Score=42.50  Aligned_cols=137  Identities=9%  Similarity=0.103  Sum_probs=87.0

Q ss_pred             HHHHHHHHHhhcCChHHHHHHHHHHhhhhc-cCcccHHHhhhccChHHHHhhhcCCcHHHHHHHHHHHHhhcCC--ch--
Q 030369           21 QYLQELVSQFQNSTDEERKEKIVANLANFA-YDPYNYTFLRQLNVLELFLDCITEPNEKLVEFGVGGICNASVD--PA--   95 (178)
Q Consensus        21 ~ylq~LV~efq~t~~~e~keqvlanLaNfA-yDP~N~~~LrqL~vidlfld~L~~~n~~l~EfAiggLcNL~~D--~~--   95 (178)
                      +.+..|+.... .++.+.|..++..|.+++ +-|.  .++  -.+++.+++.|..+++.+++-|.-+|..++.+  +.  
T Consensus        48 ~il~~Ll~~L~-d~~~~vR~~A~~~L~~l~~~~~~--~~~--~~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~  122 (1230)
T 1u6g_C           48 KVVKMILKLLE-DKNGEVQNLAVKCLGPLVSKVKE--YQV--ETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASS  122 (1230)
T ss_dssp             HHHHHHHHHTT-CSSHHHHHHHHHHHHHHHTTSCH--HHH--HHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC----
T ss_pred             HHHHHHHHHhc-CCCHHHHHHHHHHHHHHHHhCCH--HHH--HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCccc
Confidence            56777777776 467888888888888887 2232  222  24788889999888877777777777766532  22  


Q ss_pred             ----hhHHhhhcCChhHHHHhhc-CCchhHHHHHHHHHHHhcCCcccccc--cchHHHHHHHHhhhhcccchhHHHhHH
Q 030369           96 ----NAAIITKSGGIPLIIECLS-SPVRNTVNHALGALYYLCSMSTKEEI--LKPEVVDVIRRYAAAESVNVSFSNLAK  167 (178)
Q Consensus        96 ----nk~~I~~~gGi~~li~lLs-S~~~evv~~AlttL~~L~~~~sr~~I--~~p~ll~ll~~~~~~~~~~~~~~nla~  167 (178)
                          ...+.  ..-+|.+.+++. ++++++...|+.++..++.... ..+  ..|.++..+...-.+.  ++.++..|.
T Consensus       123 ~~~~~~~~~--~~llp~L~~~l~~~~~~~~~~~al~~l~~~~~~~~-~~l~~~~~~ll~~l~~~L~~~--~~~vR~~a~  196 (1230)
T 1u6g_C          123 GSALAANVC--KKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQG-GLLVNFHPSILTCLLPQLTSP--RLAVRKRTI  196 (1230)
T ss_dssp             -CCTHHHHH--HHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHTC-SSCTTTHHHHHHHHGGGGGCS--SHHHHHHHH
T ss_pred             ccchHHHHH--HHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhH-hHHHHHHHHHHHHHHHHHcCC--cHHHHHHHH
Confidence                11111  123788899997 6889999999999999884210 111  2356666655444433  345555544

>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A

Probab=91.13  E-value=1.1  Score=40.56  Aligned_cols=147  Identities=12%  Similarity=0.128  Sum_probs=89.6

Q ss_pred             HHHHHHHHHhhcCC-hHHHHHHHHHHhhhhc--cCcccHHHhhh--ccChHHHHhhhcCC--cHHHHHHHHHHHHhhcCC
Q 030369           21 QYLQELVSQFQNST-DEERKEKIVANLANFA--YDPYNYTFLRQ--LNVLELFLDCITEP--NEKLVEFGVGGICNASVD   93 (178)
Q Consensus        21 ~ylq~LV~efq~t~-~~e~keqvlanLaNfA--yDP~N~~~Lrq--L~vidlfld~L~~~--n~~l~EfAiggLcNL~~D   93 (178)
                      +.+..|+.-.+..+ +...|+.++.-|..+.  ++|..   +..  -.+++.|+.+|..+  +..+..-|+.++++++.-
T Consensus       128 ~ll~~l~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~---~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~  204 (876)
T 1qgr_A          128 ELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQ---LQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEF  204 (876)
T ss_dssp             THHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCHHH---HGGGHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGG
T ss_pred             HHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCHhh---HHhHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHH
Confidence            44555665554443 7788998888888887  34432   222  25678889999876  688889999999988632


Q ss_pred             --chhhHHhhhcCChhHHHHhhcCCchhHHHHHHHHHHHhcCCccccccc---ch-HHHHHHHHhhhhcccchhHHHhHH
Q 030369           94 --PANAAIITKSGGIPLIIECLSSPVRNTVNHALGALYYLCSMSTKEEIL---KP-EVVDVIRRYAAAESVNVSFSNLAK  167 (178)
Q Consensus        94 --~~nk~~I~~~gGi~~li~lLsS~~~evv~~AlttL~~L~~~~sr~~I~---~p-~ll~ll~~~~~~~~~~~~~~nla~  167 (178)
                        +..........-++.+.+++.++++++...++.+|..++...  ....   .+ .+++.+...-.+.  ...++..|-
T Consensus       205 ~~~~~~~~~~~~~il~~l~~~~~~~~~~vr~~a~~~l~~l~~~~--~~~~~~~~~~~l~~~~~~~~~~~--~~~v~~~al  280 (876)
T 1qgr_A          205 TKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLY--YQYMETYMGPALFAITIEAMKSD--IDEVALQGI  280 (876)
T ss_dssp             CHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHS--GGGCHHHHTTTHHHHHHHHHTCS--SHHHHHHHH
T ss_pred             HHHHHHhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHh--HHHHHHHHHHHHHHHHHHHhcCC--chHHHHHHH
Confidence              111111111112566677778888999889999988877431  1111   12 5666665443322  356666666


Q ss_pred             HHHHhhc
Q 030369          168 AFLDKHV  174 (178)
Q Consensus       168 ~fL~~~~  174 (178)
                      -|+..++
T Consensus       281 ~~l~~l~  287 (876)
T 1qgr_A          281 EFWSNVC  287 (876)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            5655443

>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A

Probab=89.01  E-value=2.1  Score=38.77  Aligned_cols=98  Identities=10%  Similarity=0.109  Sum_probs=71.6

Q ss_pred             cCChHHHHHHHHHHhhhhccCcc--c-HHHhhhccChHHHHhhhcCCcHHHHHHHHHHHHhhcCCchh----hHHhhhcC
Q 030369           32 NSTDEERKEKIVANLANFAYDPY--N-YTFLRQLNVLELFLDCITEPNEKLVEFGVGGICNASVDPAN----AAIITKSG  104 (178)
Q Consensus        32 ~t~~~e~keqvlanLaNfAyDP~--N-~~~LrqL~vidlfld~L~~~n~~l~EfAiggLcNL~~D~~n----k~~I~~~g  104 (178)
                      ..++...|+.++..|.+++....  . ..++.  ++++.++..|..+++.+++-|.-+|.+++.....    ..++-  .
T Consensus       376 ~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~~~--~~l~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~l~--~  451 (876)
T 1qgr_A          376 KNPDWRYRDAAVMAFGCILEGPEPSQLKPLVI--QAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYLA--P  451 (876)
T ss_dssp             TCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHH--HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTSSTTTHH--H
T ss_pred             cCCChHHHHHHHHHHHHHHcCCCHHHHHHHHH--HHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCchhcccHHHHH--H
Confidence            34578889999999999996532  1 23443  4799999999999999999999888888754221    22221  2


Q ss_pred             ChhHHHHhhcCCchhHHHHHHHHHHHhcCC
Q 030369          105 GIPLIIECLSSPVRNTVNHALGALYYLCSM  134 (178)
Q Consensus       105 Gi~~li~lLsS~~~evv~~AlttL~~L~~~  134 (178)
                      -++.+.++|.++ +.+...|..++..++..
T Consensus       452 ~l~~l~~~l~~~-~~v~~~a~~al~~l~~~  480 (876)
T 1qgr_A          452 LLQCLIEGLSAE-PRVASNVCWAFSSLAEA  480 (876)
T ss_dssp             HHHHHHHHTTSC-HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCC-HHHHHHHHHHHHHHHHH
Confidence            367778888775 88888999999888743

>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A

Probab=88.96  E-value=0.84  Score=42.23  Aligned_cols=85  Identities=15%  Similarity=0.172  Sum_probs=61.8

Q ss_pred             hHHHHHHHHHHhhhhc-cCcccHHHhhhccChHHHHhhhcCCcHHHHHHHHHHHHhhcCCchhhHHhhhcCChhHHHHhh
Q 030369           35 DEERKEKIVANLANFA-YDPYNYTFLRQLNVLELFLDCITEPNEKLVEFGVGGICNASVDPANAAIITKSGGIPLIIECL  113 (178)
Q Consensus        35 ~~e~keqvlanLaNfA-yDP~N~~~LrqL~vidlfld~L~~~n~~l~EfAiggLcNL~~D~~nk~~I~~~gGi~~li~lL  113 (178)
                      +...|+=+--+..-|- +=|.    |. =.+|+..+|+..+++..++-.||-+|..+|-| .+-..|     +..|.+||
T Consensus        41 ~~k~K~LaaQ~I~kffk~FP~----l~-~~Ai~a~lDLcEDed~~IR~qaik~Lp~~ck~-~~i~ki-----aDvL~QlL  109 (507)
T 3u0r_A           41 GTKEKRLAAQFIPKFFKHFPE----LA-DSAINAQLDLCEDEDVSIRRQAIKELPQFATG-ENLPRV-----ADILTQLL  109 (507)
T ss_dssp             CHHHHHHHHHHHHHHGGGCGG----GH-HHHHHHHHHHHTCSSHHHHHHHHHHGGGGCCT-TCHHHH-----HHHHHHHT
T ss_pred             CHHHHHHHHHHHHHHHhhChh----hH-HHHHHHHHHHHhcccHHHHHHHHHhhHHHhhh-hhhhhH-----HHHHHHHH
Confidence            4555555555676665 3343    22 26899999999999999999999999999999 554444     56889999


Q ss_pred             cCCch---hHHHHHHHHHHH
Q 030369          114 SSPVR---NTVNHALGALYY  130 (178)
Q Consensus       114 sS~~~---evv~~AlttL~~  130 (178)
                      .+.++   ++|.+|+..|+-
T Consensus       110 qtdd~~E~~~V~~sL~sllk  129 (507)
T 3u0r_A          110 QTDDSAEFNLVNNALLSIFK  129 (507)
T ss_dssp             TCCCHHHHHHHHHHHHHHHH
T ss_pred             hccchHHHHHHHHHHHHHHh
Confidence            77653   566777665554

>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}

Probab=84.71  E-value=1.9  Score=34.70  Aligned_cols=101  Identities=11%  Similarity=0.130  Sum_probs=64.4

Q ss_pred             cChHHHHhh-hcCCcHHHHHHHHHHHHhhcCCchhhHHhhhcCChhHHHHhhcCCchhHHHHHHHHHHHhcCCccccccc
Q 030369           63 NVLELFLDC-ITEPNEKLVEFGVGGICNASVDPANAAIITKSGGIPLIIECLSSPVRNTVNHALGALYYLCSMSTKEEIL  141 (178)
Q Consensus        63 ~vidlfld~-L~~~n~~l~EfAiggLcNL~~D~~nk~~I~~~gGi~~li~lLsS~~~evv~~AlttL~~L~~~~sr~~I~  141 (178)
                      .+++.+++- |.+....+++-|..++.-++--......+     ++.|...+.+.+|-++..++..|..++..-....+.
T Consensus       102 ~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~~~~~-----~e~l~~~l~~Knpkv~~~~l~~l~~~l~~fg~~~~~  176 (278)
T 4ffb_C          102 TWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTSITQS-----VELVIPFFEKKLPKLIAAAANCVYELMAAFGLTNVN  176 (278)
T ss_dssp             HHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSSSHHH-----HHHHGGGGGCSCHHHHHHHHHHHHHHHHHHTTTTCC
T ss_pred             HHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCcHHHH-----HHHHHHHHhccCHHHHHHHHHHHHHHHHHhCCCcCC
Confidence            567777774 78888899999988887765222222222     345666778889999999999999887541111121


Q ss_pred             ----chHHHHHHHHhhhhcccchhHHHhHHHHH
Q 030369          142 ----KPEVVDVIRRYAAAESVNVSFSNLAKAFL  170 (178)
Q Consensus       142 ----~p~ll~ll~~~~~~~~~~~~~~nla~~fL  170 (178)
                          .|.+++.+..+-.  +.|+.+++-|.-++
T Consensus       177 ~k~~l~~i~~~l~k~l~--d~~~~VR~aA~~l~  207 (278)
T 4ffb_C          177 VQTFLPELLKHVPQLAG--HGDRNVRSQTMNLI  207 (278)
T ss_dssp             HHHHHHHHGGGHHHHHT--CSSHHHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHHHh--CCcHHHHHHHHHHH
Confidence                2334444433333  33678888887665

>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}

Probab=83.42  E-value=8.5  Score=32.82  Aligned_cols=66  Identities=20%  Similarity=0.097  Sum_probs=37.2

Q ss_pred             ChHHHHhhhcCCcHHHHHHHHHHHHhhc---CCchhhHHhhhcCChhHHHHhhcCCchhHHHHHHHHHHHhcCC
Q 030369           64 VLELFLDCITEPNEKLVEFGVGGICNAS---VDPANAAIITKSGGIPLIIECLSSPVRNTVNHALGALYYLCSM  134 (178)
Q Consensus        64 vidlfld~L~~~n~~l~EfAiggLcNL~---~D~~nk~~I~~~gGi~~li~lLsS~~~evv~~AlttL~~L~~~  134 (178)
                      |++.+...+.+.|..+..-|+..+-|++   -||..-.-|+     ..|..+|+++|+.++.-|+..+-...+.
T Consensus       151 V~~~l~sLl~Skd~~vK~agl~~L~eia~~S~D~~i~~~I~-----~eI~elL~~eD~~l~e~aLd~Le~ils~  219 (265)
T 3b2a_A          151 VRTYINELVVSPDLYTKVAGFCLFLNMLNSSADSGHLTLIL-----DEIPSLLQNDNEFIVELALDVLEKALSF  219 (265)
T ss_dssp             HHHHHHHHHTCSSHHHHHHHHHHHHHHGGGCSSCCCGGGTT-----TTHHHHHTCSCHHHHHHHHHHHHHHTTS
T ss_pred             HHHHHHHHHhCCChhHHHHHHHHHHHhhcccCCHHHHHHHH-----HHHHHHHcCCCHHHHHHHHHHHHHHHcC
Confidence            3444555555556666666666655553   3555555553     2344555666666666666666665544

>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N

Probab=81.21  E-value=23  Score=35.02  Aligned_cols=121  Identities=16%  Similarity=0.158  Sum_probs=83.9

Q ss_pred             CCCChHHHHHHHHHHhhcCChHHHHHHHHHHhhhhc-cCcccHHHhhhccChHHHHhhhc-CCcHHHHHHHHHHHHhhcC
Q 030369           15 SGTPRLQYLQELVSQFQNSTDEERKEKIVANLANFA-YDPYNYTFLRQLNVLELFLDCIT-EPNEKLVEFGVGGICNASV   92 (178)
Q Consensus        15 ~g~~R~~ylq~LV~efq~t~~~e~keqvlanLaNfA-yDP~N~~~LrqL~vidlfld~L~-~~n~~l~EfAiggLcNL~~   92 (178)
                      -|++-..-+|.|..--.+.++.+.|..++..|+.-+ -+|         ..++-.++.|. ..|+.+..-|+.+|-.+|+
T Consensus       571 aGTGn~~aIq~LL~~~~~d~~d~VRraAViaLGlI~~g~~---------e~v~rlv~~L~~~~d~~VR~gAalALGli~a  641 (963)
T 4ady_A          571 AGTGNNSAVKRLLHVAVSDSNDDVRRAAVIALGFVLLRDY---------TTVPRIVQLLSKSHNAHVRCGTAFALGIACA  641 (963)
T ss_dssp             TTSCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTSSSC---------SSHHHHTTTGGGCSCHHHHHHHHHHHHHHTS
T ss_pred             cCCCCHHHHHHHHHHhccCCcHHHHHHHHHHHHhhccCCH---------HHHHHHHHHHHhcCCHHHHHHHHHHHHHhcc
Confidence            377777788888777777778888999999999765 445         33444555554 4577777778888888887


Q ss_pred             CchhhHHhhhcCChhHHHHhhcCCchhHHHHHHHHHHHhcCCcccccccchHHHHHHHHh
Q 030369           93 DPANAAIITKSGGIPLIIECLSSPVRNTVNHALGALYYLCSMSTKEEILKPEVVDVIRRY  152 (178)
Q Consensus        93 D~~nk~~I~~~gGi~~li~lLsS~~~evv~~AlttL~~L~~~~sr~~I~~p~ll~ll~~~  152 (178)
                      -..+.+.      |+.|..+++.++.+|-.+|+.+|=.+..-+  .+-..|.+-+.++.+
T Consensus       642 Gn~~~~a------id~L~~L~~D~d~~Vrq~Ai~ALG~Ig~gt--nna~~~rva~~l~~L  693 (963)
T 4ady_A          642 GKGLQSA------IDVLDPLTKDPVDFVRQAAMIALSMILIQQ--TEKLNPQVADINKNF  693 (963)
T ss_dssp             SSCCHHH------HHHHHHHHTCSSHHHHHHHHHHHHHHSTTC--CTTTCTTHHHHHHHH
T ss_pred             CCCcHHH------HHHHHHHccCCCHHHHHHHHHHHHHHhcCC--ccccchHHHHHHHHH
Confidence            6554433      457888889999999999999988777432  222234444444443

>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}

Probab=80.41  E-value=4.7  Score=35.13  Aligned_cols=63  Identities=17%  Similarity=0.079  Sum_probs=41.7

Q ss_pred             HHHhhhcCCcHHHHHHHHHHHHhhcCCchhhHHhhhcCChhHHHHhhcCCchhHHHHHHHHHHHhcC
Q 030369           67 LFLDCITEPNEKLVEFGVGGICNASVDPANAAIITKSGGIPLIIECLSSPVRNTVNHALGALYYLCS  133 (178)
Q Consensus        67 lfld~L~~~n~~l~EfAiggLcNL~~D~~nk~~I~~~gGi~~li~lLsS~~~evv~~AlttL~~L~~  133 (178)
                      .+-.+|...++-+..-|+.|..+|+.+.  .+.+ + +.++.+.++++++++-|+.||++.|+.+..
T Consensus       143 ~lk~~L~d~~pyVRk~A~l~~~kL~~~~--pe~v-~-~~~~~l~~ll~d~n~~V~~~Al~lL~ei~~  205 (355)
T 3tjz_B          143 YMKQAIVDKVPSVSSSALVSSLHLLKCS--FDVV-K-RWVNEAQEAASSDNIMVQYHALGLLYHVRK  205 (355)
T ss_dssp             HHHHHHTCSSHHHHHHHHHHHHHHTTTC--HHHH-H-TTHHHHHHHTTCSSHHHHHHHHHHHHHHHT
T ss_pred             HHHHHcCCCCHHHHHHHHHHHHHHhccC--HHHH-H-HHHHHHHHHhcCCCccHHHHHHHHHHHHHh
Confidence            3444555556777777777777776442  2222 2 467777888888888888888888888774

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	178
d1jdha_	529	a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens)	2e-12
d1jdha_	529	a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens)	7e-10
d1jdha_	529	a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens)	5e-09
d1xm9a1	457	a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo	2e-06
d1xqra1	264	a.118.1.21 (A:87-350) Hsp70-binding protein 1 (Hsp	9e-05

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 62.6 bits (150), Expect = 2e-12
 Identities = 28/122 (22%), Positives = 43/122 (35%), Gaps = 4/122 (3%)

Query: 14  RSGTPRLQYLQELVSQFQNSTDEERKEKIVAN----LANFAYDPYNYTFLRQLNVLELFL 69
                  Q    +    Q   +  R E+IV      L   A D +N   +R LN + LF+
Sbjct: 407 VRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFV 466

Query: 70  DCITEPNEKLVEFGVGGICNASVDPANAAIITKSGGIPLIIECLSSPVRNTVNHALGALY 129
             +  P E +     G +C  + D   A  I   G    + E L S       +A   L+
Sbjct: 467 QLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLF 526

Query: 130 YL 131
            +
Sbjct: 527 RM 528

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.9 bits (130), Expect = 7e-10
 Identities = 22/106 (20%), Positives = 43/106 (40%), Gaps = 2/106 (1%)

Query: 32  NSTDEERKEKIVANLANFA-YDPYNYTFLRQLNVLELFLDCITEPNE-KLVEFGVGGICN 89
           N  D+    K    +   +  +   +  +R   ++   +  +   N+ +      G + N
Sbjct: 27  NDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHN 86

Query: 90  ASVDPANAAIITKSGGIPLIIECLSSPVRNTVNHALGALYYLCSMS 135
            S        I KSGGIP +++ L SPV + + +A+  L+ L    
Sbjct: 87  LSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQ 132

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.2 bits (123), Expect = 5e-09
 Identities = 29/146 (19%), Positives = 45/146 (30%), Gaps = 12/146 (8%)

Query: 22  YLQELVSQFQNSTDEERKEKIVANLANFAYDPYNYTFLRQLNVLELFLDCITEPNEKLVE 81
            L   ++    +    R++  +  L       +  T  R                E++VE
Sbjct: 378 GLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVE 437

Query: 82  FGVGGICNASVDPANAAIITKSGGIPLIIECLSSPVRNTVNHALGALYYLC-SMSTKEEI 140
              G +   + D  N  +I     IPL ++ L SP+ N    A G L  L       E I
Sbjct: 438 GCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAI 497

Query: 141 LKPEVVDV-----------IRRYAAA 155
                              +  YAAA
Sbjct: 498 EAEGATAPLTELLHSRNEGVATYAAA 523

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 457

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.4 bits (103), Expect = 2e-06
 Identities = 21/91 (23%), Positives = 36/91 (39%), Gaps = 3/91 (3%)

Query: 65  LELFLDCITEPNEKLVEFGVGGICN-ASVDPANAAIITKSGGIPLIIECLSSPVRNTVNH 123
           +   +  ++  +EK    G   I +    D +    + + GGI  +++ L SP +N    
Sbjct: 4   IPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQA 63

Query: 124 ALGALYYLCSMST--KEEILKPEVVDVIRRY 152
           A GAL  L   ST  K E  +   +      
Sbjct: 64  AAGALRNLVFRSTTNKLETRRQNGIREAVSL 94

>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 264

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HspBP1 domain
domain: Hsp70-binding protein 1 (HspBP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.3 bits (90), Expect = 9e-05
 Identities = 20/116 (17%), Positives = 40/116 (34%), Gaps = 3/116 (2%)

Query: 23  LQELVSQFQNSTDEERKEKIVANLANFAYDPYNYTFLRQLNVLELFLD-CITEPNEKLVE 81
           +     + + + D++ +E  +  LA+   +  N     QL+ + L +   +      L  
Sbjct: 18  MPPTAGEAEQAADQQEREGALELLADLCENMDNAADFCQLSGMHLLVGRYLEAGAAGLRW 77

Query: 82  FGVGGICNAS-VDPANAAIITKSGGIPLIIECLSSPVRNTV-NHALGALYYLCSMS 135
                I   S    A    +   G +  ++  L     +TV   AL A+  L    
Sbjct: 78  RAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLVREQ 133

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	178
d1xm9a1	457	Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}	99.44
d1jdha_	529	beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}	99.31
d1xqra1	264	Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi	99.31
d1xqra1	264	Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi	99.28
d1jdha_	529	beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}	99.28
d1q1sc_	434	Importin alpha {Mouse (Mus musculus) [TaxId: 10090	99.23
d1wa5b_	503	Karyopherin alpha {Baker's yeast (Saccharomyces ce	99.2
d1q1sc_	434	Importin alpha {Mouse (Mus musculus) [TaxId: 10090	99.19
d1xm9a1	457	Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}	99.17
d1wa5b_	503	Karyopherin alpha {Baker's yeast (Saccharomyces ce	98.9
d1te4a_	111	MTH187 {Archaeon Methanobacterium thermoautotrophi	97.55
d1te4a_	111	MTH187 {Archaeon Methanobacterium thermoautotrophi	96.88
d1oyza_	276	Hypothetical protein YibA {Escherichia coli [TaxId	96.52
d1oyza_	276	Hypothetical protein YibA {Escherichia coli [TaxId	95.77
d2vglb_	579	Adaptin beta subunit N-terminal fragment {Human (H	95.49
d2vglb_	579	Adaptin beta subunit N-terminal fragment {Human (H	95.07
d1b3ua_	588	Constant regulatory domain of protein phosphatase	94.16
d1ibrb_	458	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	93.62
d1u6gc_	1207	Cullin-associated NEDD8-dissociated protein 1 (Tip	92.99
d2bpta1	861	Importin beta {Baker's yeast (Saccharomyces cerevi	92.91
d1b3ua_	588	Constant regulatory domain of protein phosphatase	92.7
d1qbkb_	888	Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96	92.06
d1ibrb_	458	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	91.93
d1u6gc_	1207	Cullin-associated NEDD8-dissociated protein 1 (Tip	90.67
d2bpta1	861	Importin beta {Baker's yeast (Saccharomyces cerevi	89.84
d2vgla_	584	Adaptin alpha C subunit N-terminal fragment {Mouse	89.69
d1qbkb_	888	Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96	88.55
d2vgla_	584	Adaptin alpha C subunit N-terminal fragment {Mouse	88.49
d1qgra_	876	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	86.41

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.44  E-value=5.1e-13  Score=106.24  Aligned_cols=110  Identities=18%  Similarity=0.224  Sum_probs=99.2

Q ss_pred             HHHHHHhhcCChHHHHHHHHHHhhhhcc-CcccHHHhhhccChHHHHhhhcCCcHHHHHHHHHHHHhhcC-CchhhHHhh
Q 030369           24 QELVSQFQNSTDEERKEKIVANLANFAY-DPYNYTFLRQLNVLELFLDCITEPNEKLVEFGVGGICNASV-DPANAAIIT  101 (178)
Q Consensus        24 q~LV~efq~t~~~e~keqvlanLaNfAy-DP~N~~~LrqL~vidlfld~L~~~n~~l~EfAiggLcNL~~-D~~nk~~I~  101 (178)
                      +.||.=. .+++++.|..+...|.|.++ |+.|+..+++.|+|+.++.+|.++++.+++.|+++|+||+. ++.++..|.
T Consensus         5 p~lv~~L-~~~~~~~~~~a~~~l~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~~~~~~~i~   83 (457)
T d1xm9a1           5 PKAVQYL-SSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLETR   83 (457)
T ss_dssp             HHHHHHH-HSSCTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHH
T ss_pred             HHHHHHh-CCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCcHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            4455544 57789999999999999996 69999999999999999999999999999999999999995 688999999


Q ss_pred             hcCChhHHHHhh-cCCchhHHHHHHHHHHHhcCC
Q 030369          102 KSGGIPLIIECL-SSPVRNTVNHALGALYYLCSM  134 (178)
Q Consensus       102 ~~gGi~~li~lL-sS~~~evv~~AlttL~~L~~~  134 (178)
                      +.||++.+++++ ++.++++...|..+|.+|...
T Consensus        84 ~~g~v~~li~~l~~~~~~~~~~~a~~~l~~l~~~  117 (457)
T d1xm9a1          84 RQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSST  117 (457)
T ss_dssp             HTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTS
T ss_pred             HCCChHHHHHHHhccCcHHHHHHHHHHHHHHHhh
Confidence            999999999998 456788999999999999876

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.31  E-value=4.1e-12  Score=108.37  Aligned_cols=132  Identities=16%  Similarity=0.243  Sum_probs=115.0

Q ss_pred             HHHHHHHHHhhcCChHHHHHHHHHHhhhhccCcccHHHhhhccChHHHHhhhcCCcHHHHHHHHHHHHhhcCCch-hhHH
Q 030369           21 QYLQELVSQFQNSTDEERKEKIVANLANFAYDPYNYTFLRQLNVLELFLDCITEPNEKLVEFGVGGICNASVDPA-NAAI   99 (178)
Q Consensus        21 ~ylq~LV~efq~t~~~e~keqvlanLaNfAyDP~N~~~LrqL~vidlfld~L~~~n~~l~EfAiggLcNL~~D~~-nk~~   99 (178)
                      +.+..|+.-.+.+++.+.++.++..|+|++.|+.+...+.+.|+++.++.+|.++++.+++.|+.+|+|+|.|.. .+..
T Consensus        59 ~~v~~l~~~L~~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~g~i~~Li~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~  138 (529)
T d1jdha_          59 QMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMA  138 (529)
T ss_dssp             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHH
T ss_pred             hHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhHHHHHHCCCHHHHHHHhCCCCHHHHHHHHHHHHHhhcccchhhhH
Confidence            356677877888889999999999999999999999999999999999999999999999999999999998855 6677


Q ss_pred             hhhcCChhHHHHhhcCCchhHHHHHHHHHHHhcCC--ccccccc----chHHHHHHHHh
Q 030369          100 ITKSGGIPLIIECLSSPVRNTVNHALGALYYLCSM--STKEEIL----KPEVVDVIRRY  152 (178)
Q Consensus       100 I~~~gGi~~li~lLsS~~~evv~~AlttL~~L~~~--~sr~~I~----~p~ll~ll~~~  152 (178)
                      +.+.||||+++++|.++++++...+..+|.+|+..  ..+..+.    .|+++.+|+..
T Consensus       139 ~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~  197 (529)
T d1jdha_         139 VRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTY  197 (529)
T ss_dssp             HHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHC
T ss_pred             HHhcCCchHHHHHHHccChHHHHHHHHHHHHHhhhhhHHHHHHHhcccchHHHHHHHhh
Confidence            78999999999999999999999999999999854  2334333    48888888653

>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HspBP1 domain
domain: Hsp70-binding protein 1 (HspBP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.31  E-value=1.3e-11  Score=98.69  Aligned_cols=128  Identities=11%  Similarity=0.097  Sum_probs=111.5

Q ss_pred             HHHHHHHhhcCChHHHHHHHHHHhhhhc-cCcccHHHhhhccChHHHHhhhcC-CcHHHHHHHHHHHHhhcCC-chhhHH
Q 030369           23 LQELVSQFQNSTDEERKEKIVANLANFA-YDPYNYTFLRQLNVLELFLDCITE-PNEKLVEFGVGGICNASVD-PANAAI   99 (178)
Q Consensus        23 lq~LV~efq~t~~~e~keqvlanLaNfA-yDP~N~~~LrqL~vidlfld~L~~-~n~~l~EfAiggLcNL~~D-~~nk~~   99 (178)
                      +..||.-+-++++.+.|.+++.-|+|++ ++|.+...+.+.++++.++.+|.+ +++.+++.|+++|+|++-+ +.++..
T Consensus        60 ~~~ll~~ll~s~~~~vr~~A~~~L~~l~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~v~~~a~~aL~~l~~~~~~~~~~  139 (264)
T d1xqra1          60 MHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLVREQEAGLLQ  139 (264)
T ss_dssp             HHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHhhcCCCHHHHHHHHHHHHHHhccchhhHHH
Confidence            5667888888999999999999999999 579999999999999999999974 5788999999999999955 778888


Q ss_pred             hhhcCChhHHHHhhcCCchhHHHHHHHHHHHhcC--Cccccccc----chHHHHHHH
Q 030369          100 ITKSGGIPLIIECLSSPVRNTVNHALGALYYLCS--MSTKEEIL----KPEVVDVIR  150 (178)
Q Consensus       100 I~~~gGi~~li~lLsS~~~evv~~AlttL~~L~~--~~sr~~I~----~p~ll~ll~  150 (178)
                      +.+.||++.++++|.+++++++..++.+|.+|+.  +..+..+.    .|.++++|.
T Consensus       140 ~~~~~gi~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~v~~L~~lL~  196 (264)
T d1xqra1         140 FLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQLVALVR  196 (264)
T ss_dssp             HHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHTTHHHHHHHHHT
T ss_pred             HHHhhhhhHHHHHHhcCchHHHHHHHHHHHHHHhccHHHHHHHHHhhhHHHHHHHHc
Confidence            9999999999999999999999999999999884  34555555    377777773

>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HspBP1 domain
domain: Hsp70-binding protein 1 (HspBP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.28  E-value=2.3e-11  Score=97.16  Aligned_cols=113  Identities=13%  Similarity=0.156  Sum_probs=104.2

Q ss_pred             HHHHHHHHhhcCChHHHHHHHHHHhhhhc-cCcccHHHhhhccChHHHHhhhcCCcHHHHHHHHHHHHhhc-CCchhhHH
Q 030369           22 YLQELVSQFQNSTDEERKEKIVANLANFA-YDPYNYTFLRQLNVLELFLDCITEPNEKLVEFGVGGICNAS-VDPANAAI   99 (178)
Q Consensus        22 ylq~LV~efq~t~~~e~keqvlanLaNfA-yDP~N~~~LrqL~vidlfld~L~~~n~~l~EfAiggLcNL~-~D~~nk~~   99 (178)
                      -+..||.=+...++.+.++.++..|+|++ .+|.|+..+.+.++++.++..|.++++.+++.|+.+|+|++ -++.++..
T Consensus       102 ~i~~Lv~lL~~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~~gi~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~  181 (264)
T d1xqra1         102 ALRKLLRLLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGT  181 (264)
T ss_dssp             HHHHHHHHHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHH
T ss_pred             chHHHHHHhhcCCCHHHHHHHHHHHHHHhccchhhHHHHHHhhhhhHHHHHHhcCchHHHHHHHHHHHHHHhccHHHHHH
Confidence            46678887777778899999999999999 55889999999999999999999999999999999999997 57999999


Q ss_pred             hhhcCChhHHHHhhcCCchhHHHHHHHHHHHhcCC
Q 030369          100 ITKSGGIPLIIECLSSPVRNTVNHALGALYYLCSM  134 (178)
Q Consensus       100 I~~~gGi~~li~lLsS~~~evv~~AlttL~~L~~~  134 (178)
                      +.+.|++|.|+.+|+++++++..+|+.+|.+|...
T Consensus       182 ~~~~~~v~~L~~lL~~~~~~~~~~a~~aL~~L~~~  216 (264)
T d1xqra1         182 LCSMGMVQQLVALVRTEHSPFHEHVLGALCSLVTD  216 (264)
T ss_dssp             HHHTTHHHHHHHHHTSCCSTHHHHHHHHHHHHHTT
T ss_pred             HHHhhhHHHHHHHHcCCCHHHHHHHHHHHHHHHhc
Confidence            99999999999999999999999999999999865

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.28  E-value=1.4e-11  Score=105.04  Aligned_cols=143  Identities=20%  Similarity=0.281  Sum_probs=115.0

Q ss_pred             HHHHHHHhhcCChHHHHHHHHHHhhhhcc-CcccHHHhhhccChHHHHhhhcC-CcHHHHHHHHHHHHhhcCCchhhHHh
Q 030369           23 LQELVSQFQNSTDEERKEKIVANLANFAY-DPYNYTFLRQLNVLELFLDCITE-PNEKLVEFGVGGICNASVDPANAAII  100 (178)
Q Consensus        23 lq~LV~efq~t~~~e~keqvlanLaNfAy-DP~N~~~LrqL~vidlfld~L~~-~n~~l~EfAiggLcNL~~D~~nk~~I  100 (178)
                      +..||.-.. +.+.+.+++++.-|++++. |+.+......-++++.+++.|.. +++.++++|+++|+++|.++.++..|
T Consensus        19 ip~L~~lL~-~~~~~v~~~A~~~l~~l~~~~~~~~~~~~~~~~v~~l~~~L~~~~~~~~~~~a~~~L~~l~~~~~~~~~i   97 (529)
T d1jdha_          19 IPELTKLLN-DEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAI   97 (529)
T ss_dssp             HHHHHHHHT-CSCHHHHHHHHHHHHHHHTSHHHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSHHHHHHH
T ss_pred             HHHHHHHHc-CCCHHHHHHHHHHHHHHHhccHHHHHHHHhhhHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhHHHH
Confidence            556666664 5688899999999999995 45555566667999999999975 57899999999999999999999999


Q ss_pred             hhcCChhHHHHhhcCCchhHHHHHHHHHHHhcCC--ccccccc----chHHHHHHHHhhhhcccchhHHHhHHHHHHh
Q 030369          101 TKSGGIPLIIECLSSPVRNTVNHALGALYYLCSM--STKEEIL----KPEVVDVIRRYAAAESVNVSFSNLAKAFLDK  172 (178)
Q Consensus       101 ~~~gGi~~li~lLsS~~~evv~~AlttL~~L~~~--~sr~~I~----~p~ll~ll~~~~~~~~~~~~~~nla~~fL~~  172 (178)
                      ++.||||.|+++|++++++++.+|+.+|.+|+.+  ..+..+.    .|+++++|+    ++  ++.+...|...|..
T Consensus        98 ~~~g~i~~Li~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~Lv~lL~----~~--~~~~~~~a~~~L~~  169 (529)
T d1jdha_          98 FKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLN----KT--NVKFLAITTDCLQI  169 (529)
T ss_dssp             HHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGG----CC--CHHHHHHHHHHHHH
T ss_pred             HHCCCHHHHHHHhCCCCHHHHHHHHHHHHHhhcccchhhhHHHhcCCchHHHHHHH----cc--ChHHHHHHHHHHHH
Confidence            9999999999999999999999999999999854  3566665    478877763    22  34555555554543

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.23  E-value=3.2e-11  Score=98.75  Aligned_cols=142  Identities=12%  Similarity=0.111  Sum_probs=118.3

Q ss_pred             cCChHHHHHHHHHHhhhhc-cCcccHHHhhhccChHHHHhhhcCCcHHHHHHHHHHHHhhcC--CchhhHHhhhcCChhH
Q 030369           32 NSTDEERKEKIVANLANFA-YDPYNYTFLRQLNVLELFLDCITEPNEKLVEFGVGGICNASV--DPANAAIITKSGGIPL  108 (178)
Q Consensus        32 ~t~~~e~keqvlanLaNfA-yDP~N~~~LrqL~vidlfld~L~~~n~~l~EfAiggLcNL~~--D~~nk~~I~~~gGi~~  108 (178)
                      .+++.+.|+.++..|.|++ .++.....+.+.++++.+++.+..++..+++.|+.+|+|++.  ++.....+.+.|++++
T Consensus       282 ~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~li~~l~~~~~~v~~~a~~~l~nl~~~~~~~~~~~l~~~~~i~~  361 (434)
T d1q1sc_         282 TNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEP  361 (434)
T ss_dssp             TCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHH
T ss_pred             cccchhhhHHHHHHHhhhccccchhHHHHhhhhhHHHHHHHHhccChHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHH
Confidence            4668889999999999998 578889999999999999999999999999999999999985  5667778899999999


Q ss_pred             HHHhhcCCchhHHHHHHHHHHHhcCCc----c----cccccchHHHHHHHHhhhhcccchhHHHhHHHHHHhhcc
Q 030369          109 IIECLSSPVRNTVNHALGALYYLCSMS----T----KEEILKPEVVDVIRRYAAAESVNVSFSNLAKAFLDKHVT  175 (178)
Q Consensus       109 li~lLsS~~~evv~~AlttL~~L~~~~----s----r~~I~~p~ll~ll~~~~~~~~~~~~~~nla~~fL~~~~~  175 (178)
                      |+++|.+++++++..++.++.+++...    .    +..+...-.++.++....|+  |+.++..|.-.||+|.+
T Consensus       362 L~~ll~~~d~~~~~~~l~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~i~~L~~~~--n~~i~~~a~~il~~~f~  434 (434)
T d1q1sc_         362 LMNLLSAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQRHE--NESVYKASLNLIEKYFS  434 (434)
T ss_dssp             HHHHTTSSCHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTSHHHHHHHHTCS--SHHHHHHHHHHHHHHCC
T ss_pred             HHHHhcCCCHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHcCCHHHHHHHHcCC--CHHHHHHHHHHHHHHhC
Confidence            999999999999999999999887421    1    11112234456677776655  79999999999999964

>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin alpha
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.20  E-value=1.2e-10  Score=98.86  Aligned_cols=112  Identities=15%  Similarity=0.171  Sum_probs=102.3

Q ss_pred             HHHHHHHhhcCChHHHHHHHHHHhhhhcc-CcccHHHhhhccChHHHHhhhcCCcHHHHHHHHHHHHhhcCC-chhhHHh
Q 030369           23 LQELVSQFQNSTDEERKEKIVANLANFAY-DPYNYTFLRQLNVLELFLDCITEPNEKLVEFGVGGICNASVD-PANAAII  100 (178)
Q Consensus        23 lq~LV~efq~t~~~e~keqvlanLaNfAy-DP~N~~~LrqL~vidlfld~L~~~n~~l~EfAiggLcNL~~D-~~nk~~I  100 (178)
                      +..||.-.+.+.+.+.+..++.-|+|.++ ++.....+.+.|+++.++..|.++++.+.+.|+.+|+|++.| +.++..+
T Consensus       121 i~~Lv~~l~~~~~~~iq~~a~~~L~ni~~~~~~~~~~~~~~g~i~~l~~lL~s~~~~i~~~a~~~L~nia~~~~~~r~~l  200 (503)
T d1wa5b_         121 VPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYV  200 (503)
T ss_dssp             HHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             hHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHhCCChHHHHHHhcCCChhHHHHHHHHHHHHhhhhHHHHHHH
Confidence            45688888888889999999999999996 577778899999999999999999999999999999999876 8999999


Q ss_pred             hhcCChhHHHHhhcCCchhHHHHHHHHHHHhcCC
Q 030369          101 TKSGGIPLIIECLSSPVRNTVNHALGALYYLCSM  134 (178)
Q Consensus       101 ~~~gGi~~li~lLsS~~~evv~~AlttL~~L~~~  134 (178)
                      .+.||++.+++++++++++++.+++.++.+|+..
T Consensus       201 ~~~~~~~~L~~ll~~~~~~~~~~~~~~l~nl~~~  234 (503)
T d1wa5b_         201 LQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRG  234 (503)
T ss_dssp             HHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHCC
T ss_pred             HhhcccccchhhcccCCHHHHHHHHHHHHHHhcC
Confidence            9999999999999999999999999999999854

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.19  E-value=6.7e-11  Score=96.77  Aligned_cols=132  Identities=11%  Similarity=0.157  Sum_probs=106.9

Q ss_pred             HHHHHHHHhhcCChHHHHHHHHHHhhhhccCccc--HHHhhhccChHHHHhhhcC-CcHHHHHHHHHHHHhhcC-Cchhh
Q 030369           22 YLQELVSQFQNSTDEERKEKIVANLANFAYDPYN--YTFLRQLNVLELFLDCITE-PNEKLVEFGVGGICNASV-DPANA   97 (178)
Q Consensus        22 ylq~LV~efq~t~~~e~keqvlanLaNfAyDP~N--~~~LrqL~vidlfld~L~~-~n~~l~EfAiggLcNL~~-D~~nk   97 (178)
                      .++.||.-.+ +++.|.+.+++..|.|+..+..|  ...+.+.|+++.++.+|.. +++.++..|+++|+|+|- ++..+
T Consensus        14 ~i~~lv~~l~-s~~~~~~~~a~~~l~~l~s~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~la~~~~~~~   92 (434)
T d1q1sc_          14 SVEDIVKGIN-SNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQT   92 (434)
T ss_dssp             CHHHHHHHHT-SSCHHHHHHHHHHHHHHHHSSSCCCHHHHHHTTCHHHHHHHTTCGGGHHHHHHHHHHHHHHHTSCHHHH
T ss_pred             hHHHHHHHHc-CCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHccCCCHHHHHHHHHHHHHHhcCChhhh
Confidence            3667777554 45999999999999999755556  3678899999999999975 467889999999999975 57889


Q ss_pred             HHhhhcCChhHHHHhhcCCchhHHHHHHHHHHHhcCC--ccccccc----chHHHHHHHHhhh
Q 030369           98 AIITKSGGIPLIIECLSSPVRNTVNHALGALYYLCSM--STKEEIL----KPEVVDVIRRYAA  154 (178)
Q Consensus        98 ~~I~~~gGi~~li~lLsS~~~evv~~AlttL~~L~~~--~sr~~I~----~p~ll~ll~~~~~  154 (178)
                      ..+.+.||+|.++++|++++++++..|+.+|.+++.+  ..+..+.    .++++.++.....
T Consensus        93 ~~i~~~~~i~~l~~~L~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~~~~~~l~~~l~~~~~  155 (434)
T d1q1sc_          93 KAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDL  155 (434)
T ss_dssp             HHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCG
T ss_pred             hHhhhccchhhhhhccccCCHHHHHHHHHHHHHHhccchHHHHHHHHhhhhhHHHHHHHhccc
Confidence            9999999999999999999999999999999999865  3455454    3666666654433

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.17  E-value=4.4e-10  Score=88.92  Aligned_cols=150  Identities=13%  Similarity=0.139  Sum_probs=121.4

Q ss_pred             hHHHHHHHHHHhhcCChHHHHHHHHHHhhhhccCcc------cHHHhhhccChHHHHhhhcCCcHHHHHHHHHHHHhhcC
Q 030369           19 RLQYLQELVSQFQNSTDEERKEKIVANLANFAYDPY------NYTFLRQLNVLELFLDCITEPNEKLVEFGVGGICNASV   92 (178)
Q Consensus        19 R~~ylq~LV~efq~t~~~e~keqvlanLaNfAyDP~------N~~~LrqL~vidlfld~L~~~n~~l~EfAiggLcNL~~   92 (178)
                      ....+..|+.-+..+.+.+.++.....+++++....      ....+.+.++++.+++.|.++++.+++.|+.+|+|++.
T Consensus       281 ~~~~i~~l~~l~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~l~~La~  360 (457)
T d1xm9a1         281 HSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSR  360 (457)
T ss_dssp             SHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSHHHHHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHT
T ss_pred             hhcHHHHHHHHHhcccchHHHHHHHHHHHHHhhccccchHHHHHHHHHHcCChHHHHhhhcCccHHHHHHHHHHHHHHhh
Confidence            456788899999999999999999999999986533      45667778999999999999999999999999999999


Q ss_pred             CchhhHHhhhcCChhHHHHhhcC------CchhHHHHHHHHHHHhcCC--cccccccc----hHHHHHHHHhhhhcccch
Q 030369           93 DPANAAIITKSGGIPLIIECLSS------PVRNTVNHALGALYYLCSM--STKEEILK----PEVVDVIRRYAAAESVNV  160 (178)
Q Consensus        93 D~~nk~~I~~~gGi~~li~lLsS------~~~evv~~AlttL~~L~~~--~sr~~I~~----p~ll~ll~~~~~~~~~~~  160 (178)
                      |+.++..|.+ +|++.++.+|..      +++++..+|+.+|.+|+..  ..+..+..    |+|+++++.    .+ ++
T Consensus       361 ~~~~~~~i~~-~~i~~li~~L~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~i~~L~~l~~~----~~-~~  434 (457)
T d1xm9a1         361 HPLLHRVMGN-QVFPEVTRLLTSHTGNTSNSEDILSSACYTVRNLMASQPQLAKQYFSSSMLNNIINLCRS----SA-SP  434 (457)
T ss_dssp             SGGGHHHHHH-HTHHHHHHTTTSCCSCSTTHHHHHHHHHHHHHHHHTTCTHHHHHHCCHHHHHHHHHHHHC----TT-CH
T ss_pred             ChhHHHHHHH-hhHHHHHHHHhccccCcCCcHHHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHhC----CC-CH
Confidence            9999999876 689999999832      3467999999999999844  46777775    666665532    21 45


Q ss_pred             hHHHhHHHHHHhhc
Q 030369          161 SFSNLAKAFLDKHV  174 (178)
Q Consensus       161 ~~~nla~~fL~~~~  174 (178)
                      ++...|...|..-+
T Consensus       435 ~~~~aA~~~L~~L~  448 (457)
T d1xm9a1         435 KAAEAARLLLSDMW  448 (457)
T ss_dssp             HHHHHHHHHHHTTS
T ss_pred             HHHHHHHHHHHHHH
Confidence            77888888887644

>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin alpha
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.90  E-value=5.2e-09  Score=88.48  Aligned_cols=138  Identities=17%  Similarity=0.143  Sum_probs=104.9

Q ss_pred             cCChHHHHHHHHHHhhhhccC-cccHHHhhhccChHHHHhhhcCCcHHHHHHHHHHHHhhcCCc-hhhHHhhhcCChhHH
Q 030369           32 NSTDEERKEKIVANLANFAYD-PYNYTFLRQLNVLELFLDCITEPNEKLVEFGVGGICNASVDP-ANAAIITKSGGIPLI  109 (178)
Q Consensus        32 ~t~~~e~keqvlanLaNfAyD-P~N~~~LrqL~vidlfld~L~~~n~~l~EfAiggLcNL~~D~-~nk~~I~~~gGi~~l  109 (178)
                      .+++.+.+++++..|+|.|.| |.+...+.+.|+++.++.++..++..+++.++.+|+|+|-.+ .........|++|.+
T Consensus       172 ~s~~~~i~~~a~~~L~nia~~~~~~r~~l~~~~~~~~L~~ll~~~~~~~~~~~~~~l~nl~~~~~~~~~~~~~~~~l~~l  251 (503)
T d1wa5b_         172 YTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTL  251 (503)
T ss_dssp             HHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHCCSSSCCCHHHHGGGHHHH
T ss_pred             cCCChhHHHHHHHHHHHHhhhhHHHHHHHHhhcccccchhhcccCCHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHH
Confidence            356889999999999999975 899999999999999999999999999999999999999653 334444556889999


Q ss_pred             HHhhcCCchhHHHHHHHHHHHhcCCc--ccccccchHHHHHHHHhhhhcccchhHHHhHHHHHH
Q 030369          110 IECLSSPVRNTVNHALGALYYLCSMS--TKEEILKPEVVDVIRRYAAAESVNVSFSNLAKAFLD  171 (178)
Q Consensus       110 i~lLsS~~~evv~~AlttL~~L~~~~--sr~~I~~p~ll~ll~~~~~~~~~~~~~~nla~~fL~  171 (178)
                      +.++.+++++++.+++.++.+|+...  ....+..+.++..+..+-.++  +..+...|...|.
T Consensus       252 ~~~l~~~d~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~--~~~v~~~al~~l~  313 (503)
T d1wa5b_         252 AKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHE--STLVQTPALRAVG  313 (503)
T ss_dssp             HHHTTCCCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGGCS--CHHHHHHHHHHHH
T ss_pred             HHHhccccHHHHHHHHHHHHhhccCCchhhhhhhhhhhhhhhhhcccCC--chhhhhhHHHHHH
Confidence            99999999999999999999998542  233344333344443333333  3444444444443

>d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: MTH187
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=97.55  E-value=0.00018  Score=49.40  Aligned_cols=90  Identities=14%  Similarity=0.129  Sum_probs=72.5

Q ss_pred             cChHHHHhhhcCCcHHHHHHHHHHHHhhcCCchhhHHhhhcCChhHHHHhhcCCchhHHHHHHHHHHHhcCCcccccccc
Q 030369           63 NVLELFLDCITEPNEKLVEFGVGGICNASVDPANAAIITKSGGIPLIIECLSSPVRNTVNHALGALYYLCSMSTKEEILK  142 (178)
Q Consensus        63 ~vidlfld~L~~~n~~l~EfAiggLcNL~~D~~nk~~I~~~gGi~~li~lLsS~~~evv~~AlttL~~L~~~~sr~~I~~  142 (178)
                      .+++.++..|..+++.++.+|+.+|.++..          .+.++.|+++|.++++.|...|+.+|-.+.         .
T Consensus        22 ~~~~~L~~~l~d~~~~vR~~a~~~L~~~~~----------~~~~~~L~~~l~d~~~~VR~~a~~aL~~i~---------~   82 (111)
T d1te4a_          22 EAFEPLLESLSNEDWRIRGAAAWIIGNFQD----------ERAVEPLIKLLEDDSGFVRSGAARSLEQIG---------G   82 (111)
T ss_dssp             TTHHHHHHGGGCSCHHHHHHHHHHHGGGCS----------HHHHHHHHHHHHHCCTHHHHHHHHHHHHHC---------S
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHhcch----------hhhHHHHHhhhccchhHHHHHHHHHHHHhC---------c
Confidence            367889999999999999999999988742          234789999999999999999999997764         3


Q ss_pred             hHHHHHHHHhhhhcccchhHHHhHHHHHHhh
Q 030369          143 PEVVDVIRRYAAAESVNVSFSNLAKAFLDKH  173 (178)
Q Consensus       143 p~ll~ll~~~~~~~~~~~~~~nla~~fL~~~  173 (178)
                      |..++.|......+  ++.++.-|..-|+.|
T Consensus        83 ~~~~~~L~~ll~d~--~~~vr~~A~~aL~th  111 (111)
T d1te4a_          83 ERVRAAMEKLAETG--TGFARKVAVNYLETH  111 (111)
T ss_dssp             HHHHHHHHHHTTSC--CTHHHHHHHHHGGGC
T ss_pred             cchHHHHHHHHcCC--CHHHHHHHHHHHHcc
Confidence            55677777666644  688988888887766

>d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: MTH187
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=96.88  E-value=0.0011  Score=45.22  Aligned_cols=84  Identities=8%  Similarity=0.013  Sum_probs=67.4

Q ss_pred             HHHHHHhhcCChHHHHHHHHHHhhhhccCcccHHHhhhccChHHHHhhhcCCcHHHHHHHHHHHHhhcCCchhhHHhhhc
Q 030369           24 QELVSQFQNSTDEERKEKIVANLANFAYDPYNYTFLRQLNVLELFLDCITEPNEKLVEFGVGGICNASVDPANAAIITKS  103 (178)
Q Consensus        24 q~LV~efq~t~~~e~keqvlanLaNfAyDP~N~~~LrqL~vidlfld~L~~~n~~l~EfAiggLcNL~~D~~nk~~I~~~  103 (178)
                      ..|+.-.. .++...|..++..|.++..          -++++.++.+|..+++.+...|+-+|..+..          .
T Consensus        25 ~~L~~~l~-d~~~~vR~~a~~~L~~~~~----------~~~~~~L~~~l~d~~~~VR~~a~~aL~~i~~----------~   83 (111)
T d1te4a_          25 EPLLESLS-NEDWRIRGAAAWIIGNFQD----------ERAVEPLIKLLEDDSGFVRSGAARSLEQIGG----------E   83 (111)
T ss_dssp             HHHHHGGG-CSCHHHHHHHHHHHGGGCS----------HHHHHHHHHHHHHCCTHHHHHHHHHHHHHCS----------H
T ss_pred             HHHHHHHc-CCCHHHHHHHHHHHHhcch----------hhhHHHHHhhhccchhHHHHHHHHHHHHhCc----------c
Confidence            34555554 4578899999999998753          2478999999999999999999999987632          2


Q ss_pred             CChhHHHHhhcCCchhHHHHHHHHH
Q 030369          104 GGIPLIIECLSSPVRNTVNHALGAL  128 (178)
Q Consensus       104 gGi~~li~lLsS~~~evv~~AlttL  128 (178)
                      +.++.|..++.+++++|...|+.+|
T Consensus        84 ~~~~~L~~ll~d~~~~vr~~A~~aL  108 (111)
T d1te4a_          84 RVRAAMEKLAETGTGFARKVAVNYL  108 (111)
T ss_dssp             HHHHHHHHHTTSCCTHHHHHHHHHG
T ss_pred             chHHHHHHHHcCCCHHHHHHHHHHH
Confidence            3478889999999999999999876

>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: Hypothetical protein YibA
species: Escherichia coli [TaxId: 562]

Probab=96.52  E-value=0.0049  Score=45.95  Aligned_cols=96  Identities=8%  Similarity=-0.105  Sum_probs=61.8

Q ss_pred             ChHHHHhhhcCCcHHHHHHHHHHHHhhcCCchhhHHhhhcCChhHHHHhhcCCchhHHHHHHHHHHHhcCCcccccccch
Q 030369           64 VLELFLDCITEPNEKLVEFGVGGICNASVDPANAAIITKSGGIPLIIECLSSPVRNTVNHALGALYYLCSMSTKEEILKP  143 (178)
Q Consensus        64 vidlfld~L~~~n~~l~EfAiggLcNL~~D~~nk~~I~~~gGi~~li~lLsS~~~evv~~AlttL~~L~~~~sr~~I~~p  143 (178)
                      ..|.++..|+.+|+.+...|+.+|..+..          ...++.++++|.++++++...|+.+|..+...........+
T Consensus        20 ~~~~L~~~L~d~~~~vR~~A~~~L~~~~~----------~~~~~~l~~~l~d~~~~vr~~a~~aL~~l~~~~~~~~~~~~   89 (276)
T d1oyza_          20 NDDELFRLLDDHNSLKRISSARVLQLRGG----------QDAVRLAIEFCSDKNYIRRDIGAFILGQIKICKKCEDNVFN   89 (276)
T ss_dssp             CHHHHHHHTTCSSHHHHHHHHHHHHHHCC----------HHHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCTTTHHHHHH
T ss_pred             CHHHHHHHhcCCCHHHHHHHHHHHHhhCC----------HhHHHHHHHHHcCCCHHHHHHHHHHHHHhccccccccchHH
Confidence            34567788998899999999988877642          13478889999888899988999998887655333332333


Q ss_pred             HHHHHHHHhhhhcccchhHHHhHHHHHHhhc
Q 030369          144 EVVDVIRRYAAAESVNVSFSNLAKAFLDKHV  174 (178)
Q Consensus       144 ~ll~ll~~~~~~~~~~~~~~nla~~fL~~~~  174 (178)
                      .++..+.+     +.++.++..|.-.|.+++
T Consensus        90 ~l~~~~l~-----d~~~~vr~~a~~aL~~~~  115 (276)
T d1oyza_          90 ILNNMALN-----DKSACVRATAIESTAQRC  115 (276)
T ss_dssp             HHHHHHHH-----CSCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhc-----CCChhHHHHHHHHHHHHc
Confidence            34333321     113445544444444433

>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: Hypothetical protein YibA
species: Escherichia coli [TaxId: 562]

Probab=95.77  E-value=0.095  Score=38.53  Aligned_cols=90  Identities=8%  Similarity=0.024  Sum_probs=67.7

Q ss_pred             HhhcCChHHHHHHHHHHhhhhccCcccHHHhhhccChHHHHhhhcCCcHHHHHHHHHHHHhhcCCchhhHHhhhcCChhH
Q 030369           29 QFQNSTDEERKEKIVANLANFAYDPYNYTFLRQLNVLELFLDCITEPNEKLVEFGVGGICNASVDPANAAIITKSGGIPL  108 (178)
Q Consensus        29 efq~t~~~e~keqvlanLaNfAyDP~N~~~LrqL~vidlfld~L~~~n~~l~EfAiggLcNL~~D~~nk~~I~~~gGi~~  108 (178)
                      ++=+.++...|..++..|..+.-          -++++.++..|..+++.+...|+.+|..+.........+     ++.
T Consensus        26 ~~L~d~~~~vR~~A~~~L~~~~~----------~~~~~~l~~~l~d~~~~vr~~a~~aL~~l~~~~~~~~~~-----~~~   90 (276)
T d1oyza_          26 RLLDDHNSLKRISSARVLQLRGG----------QDAVRLAIEFCSDKNYIRRDIGAFILGQIKICKKCEDNV-----FNI   90 (276)
T ss_dssp             HHTTCSSHHHHHHHHHHHHHHCC----------HHHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCTTTHHHH-----HHH
T ss_pred             HHhcCCCHHHHHHHHHHHHhhCC----------HhHHHHHHHHHcCCCHHHHHHHHHHHHHhccccccccch-----HHH
Confidence            34456788899999998887752          257899999999999999999999999886544444433     333


Q ss_pred             -HHHhhcCCchhHHHHHHHHHHHhcC
Q 030369          109 -IIECLSSPVRNTVNHALGALYYLCS  133 (178)
Q Consensus       109 -li~lLsS~~~evv~~AlttL~~L~~  133 (178)
                       +..+++++++.+...|+.+|-.++.
T Consensus        91 l~~~~l~d~~~~vr~~a~~aL~~~~~  116 (276)
T d1oyza_          91 LNNMALNDKSACVRATAIESTAQRCK  116 (276)
T ss_dssp             HHHHHHHCSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhcCCChhHHHHHHHHHHHHcc
Confidence             4445688889999999998877764

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.16  E-value=0.42  Score=39.28  Aligned_cols=125  Identities=15%  Similarity=0.175  Sum_probs=77.5

Q ss_pred             ChHHHHHHHHHHhhhhc--cCcccHHHhhhccChHHHHhhhcCCcHHHHHHHHHHHHhhc---CCchhhHHhhhcCChhH
Q 030369           34 TDEERKEKIVANLANFA--YDPYNYTFLRQLNVLELFLDCITEPNEKLVEFGVGGICNAS---VDPANAAIITKSGGIPL  108 (178)
Q Consensus        34 ~~~e~keqvlanLaNfA--yDP~N~~~LrqL~vidlfld~L~~~n~~l~EfAiggLcNL~---~D~~nk~~I~~~gGi~~  108 (178)
                      +..+.|+.++..|..++  +-+ +|   ..-.+++.+.+.+..++......++-++.-+.   .....+.+     -+|.
T Consensus       453 ~~~~VR~~A~~~L~~l~~~~~~-~~---~~~~i~~~l~~~~~~~~~~~R~~~~~~l~~l~~~~~~~~~~~~-----ilp~  523 (588)
T d1b3ua_         453 HVYAIREAATSNLKKLVEKFGK-EW---AHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQDITTKH-----MLPT  523 (588)
T ss_dssp             SSHHHHHHHHHHHHHHHHHHCH-HH---HHHHTHHHHHHTTTCSCHHHHHHHHHHHHHHHHHHHHHHHHHH-----THHH
T ss_pred             CchhHHHHHHHHHHHHHHHhCc-HH---HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcChHHHHHH-----HHHH
Confidence            45566776666666554  111 11   11247788888888887766665555544442   22222222     4789


Q ss_pred             HHHhhcCCchhHHHHHHHHHHHhcCCcccccccchHHHHHHHHhhhhcccchhHHHhHHHHH
Q 030369          109 IIECLSSPVRNTVNHALGALYYLCSMSTKEEILKPEVVDVIRRYAAAESVNVSFSNLAKAFL  170 (178)
Q Consensus       109 li~lLsS~~~evv~~AlttL~~L~~~~sr~~I~~p~ll~ll~~~~~~~~~~~~~~nla~~fL  170 (178)
                      +.++++++.++|-..++.+|..+...-... ...+.+..+|++...  +.++.++..|+-=|
T Consensus       524 ll~~~~D~v~nVR~~a~~~l~~i~~~~~~~-~~~~~i~~~l~~L~~--D~d~dVr~~A~~al  582 (588)
T d1b3ua_         524 VLRMAGDPVANVRFNVAKSLQKIGPILDNS-TLQSEVKPILEKLTQ--DQDVDVKYFAQEAL  582 (588)
T ss_dssp             HHHGGGCSCHHHHHHHHHHHHHHGGGSCHH-HHHHHHHHHHHHHTT--CSSHHHHHHHHHHH
T ss_pred             HHHHcCCCCHHHHHHHHHHHHHHHHHcCcH-hHHHHHHHHHHHHcC--CCCHHHHHHHHHHH
Confidence            999999999999999999999987542222 233445566666655  44577777776433

>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.62  E-value=0.068  Score=41.48  Aligned_cols=85  Identities=13%  Similarity=0.232  Sum_probs=59.6

Q ss_pred             ChHHHHhhhcCCcHHHHHHHHHHHHhhcC---CchhhHHhhhcCChhHHHHhhcCCchhHHHHHHHHHHHhcCC---ccc
Q 030369           64 VLELFLDCITEPNEKLVEFGVGGICNASV---DPANAAIITKSGGIPLIIECLSSPVRNTVNHALGALYYLCSM---STK  137 (178)
Q Consensus        64 vidlfld~L~~~n~~l~EfAiggLcNL~~---D~~nk~~I~~~gGi~~li~lLsS~~~evv~~AlttL~~L~~~---~sr  137 (178)
                      +++.+...|++++...++-|+.+|..++-   +...+.++-  .-+|.|+.++.++++.|...|+.+|-.++..   ...
T Consensus       366 l~~~i~~~l~s~~~~~r~aal~~l~~i~~~~~~~~~~~~l~--~i~~~l~~~l~d~~~~VR~~a~~~l~~i~~~~~~~~~  443 (458)
T d1ibrb_         366 VLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVI--QAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAI  443 (458)
T ss_dssp             HHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCTTTTCTTTT--THHHHHHHGGGCSCHHHHHHHHHHHHHHHHHGGGGCC
T ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcCHhHHHHHHH--HHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhcccc
Confidence            45566677778888888888888887763   223344443  3478899999999999998888888776532   233


Q ss_pred             ccccchHHHHHHH
Q 030369          138 EEILKPEVVDVIR  150 (178)
Q Consensus       138 ~~I~~p~ll~ll~  150 (178)
                      .....||+++.|.
T Consensus       444 ~~~~l~~ll~~ll  456 (458)
T d1ibrb_         444 NDVYLAPLLQCLI  456 (458)
T ss_dssp             STTTHHHHHHHHH
T ss_pred             hhhHHHHHHHHHh
Confidence            4455788888774

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.99  E-value=0.22  Score=44.43  Aligned_cols=83  Identities=13%  Similarity=0.091  Sum_probs=62.8

Q ss_pred             cChHHHHhhhcCCcHHHHHHHHHHHHhhcCCch--hhHHhhhcCChhHHHHhhcCCchhHHHHHHHHHHHhcCCcccccc
Q 030369           63 NVLELFLDCITEPNEKLVEFGVGGICNASVDPA--NAAIITKSGGIPLIIECLSSPVRNTVNHALGALYYLCSMSTKEEI  140 (178)
Q Consensus        63 ~vidlfld~L~~~n~~l~EfAiggLcNL~~D~~--nk~~I~~~gGi~~li~lLsS~~~evv~~AlttL~~L~~~~sr~~I  140 (178)
                      ..++.+.+.|..+++.+...|+.++-.++.+-.  ...++..  -|+.+.++|++|+++|...|+++|-.++.  +++.+
T Consensus       962 ~~lp~L~~~l~~~~~~~r~~ai~~l~~~~~~~~~~~~~~l~~--li~~ll~~l~d~~~~vR~~al~~l~~~~~--~~p~l 1037 (1207)
T d1u6gc_         962 TLLPRLKGYLISGSSYARSSVVTAVKFTISDHPQPIDPLLKN--CIGDFLKTLEDPDLNVRRVALVTFNSAAH--NKPSL 1037 (1207)
T ss_dssp             GTHHHHTTTSSSSCHHHHHHHHHHTGGGCCSSCCTHHHHHHH--HSTTTHHHHSSSSTHHHHHHHHHHHHHHH--HCGGG
T ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcchhhHHHHHH--HHHHHHHHhCCCCHHHHHHHHHHHHHHHH--hChHH
Confidence            468889999999999999999999988876632  2333332  37788899999999999999999998883  45666


Q ss_pred             cchHHHHHH
Q 030369          141 LKPEVVDVI  149 (178)
Q Consensus       141 ~~p~ll~ll  149 (178)
                      ..|-+=++|
T Consensus      1038 i~~~l~~ll 1046 (1207)
T d1u6gc_        1038 IRDLLDTVL 1046 (1207)
T ss_dssp             TGGGHHHHH
T ss_pred             HHHHHHHHH
Confidence            654433333

>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.91  E-value=0.42  Score=39.78  Aligned_cols=150  Identities=13%  Similarity=0.139  Sum_probs=89.6

Q ss_pred             HHHHHHHHHHhhcCChHHHHHHHHHHhhhhc--cCcccHHHhhhc-cChHHHHhhhc--CCcHHHHHHHHHHHHhhcCCc
Q 030369           20 LQYLQELVSQFQNSTDEERKEKIVANLANFA--YDPYNYTFLRQL-NVLELFLDCIT--EPNEKLVEFGVGGICNASVDP   94 (178)
Q Consensus        20 ~~ylq~LV~efq~t~~~e~keqvlanLaNfA--yDP~N~~~LrqL-~vidlfld~L~--~~n~~l~EfAiggLcNL~~D~   94 (178)
                      .|.+..|++-.+.+++...++-++.-|..+.  .++....++-.+ +++..++..+.  +.+..++..|+.++.++...-
T Consensus       133 peli~~L~~~~~s~~~~~~~~~al~~l~~i~e~~~~~~~~~~~~~~~il~~i~~~~~~~~~~~~v~~~a~~~l~~~~~~~  212 (861)
T d2bpta1         133 PELMKIMVDNTGAEQPENVKRASLLALGYMCESADPQSQALVSSSNNILIAIVQGAQSTETSKAVRLAALNALADSLIFI  212 (861)
T ss_dssp             HHHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHTSSTTSSTTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHGGGC
T ss_pred             HHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHH
Confidence            4788888888888777777877776676665  444443333332 34445555443  346788899999998875432


Q ss_pred             hh--hHHhhhcCChhHHHHhhcCCchhHHHHHHHHHHHhcCCcccccccch---HHHHHH-HHhhhhcccchhHHHhHHH
Q 030369           95 AN--AAIITKSGGIPLIIECLSSPVRNTVNHALGALYYLCSMSTKEEILKP---EVVDVI-RRYAAAESVNVSFSNLAKA  168 (178)
Q Consensus        95 ~n--k~~I~~~gGi~~li~lLsS~~~evv~~AlttL~~L~~~~sr~~I~~p---~ll~ll-~~~~~~~~~~~~~~nla~~  168 (178)
                      ..  ........-++.+.+++.++++++...++.++..++..  ..+...|   .++..+ .....  +.+..++..|.-
T Consensus       213 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~i~~~--~~~~~~~~l~~~l~~l~~~~~~--~~~~~v~~~~~~  288 (861)
T d2bpta1         213 KNNMEREGERNYLMQVVCEATQAEDIEVQAAAFGCLCKIMSK--YYTFMKPYMEQALYALTIATMK--SPNDKVASMTVE  288 (861)
T ss_dssp             HHHHTSHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHH--HGGGCHHHHHHTHHHHHHHHTT--CSSHHHHHHHHH
T ss_pred             hHhHHhhhhhhHHHHhHHHHhcCCCHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHhc--CccHHHHHHHHH
Confidence            21  11111122356778888999999999999999888743  2222322   222222 22222  224567776666


Q ss_pred             HHHhh
Q 030369          169 FLDKH  173 (178)
Q Consensus       169 fL~~~  173 (178)
                      |+...
T Consensus       289 ~l~~l  293 (861)
T d2bpta1         289 FWSTI  293 (861)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            66543

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.70  E-value=0.66  Score=38.02  Aligned_cols=141  Identities=13%  Similarity=0.130  Sum_probs=79.9

Q ss_pred             HHHHHHHHHHhhcCChHHHHHHHHHHhhhhcc---CcccHHHhhhccChHHHHhhhcCCcHHHHHHHHHHHHhhcCCchh
Q 030369           20 LQYLQELVSQFQNSTDEERKEKIVANLANFAY---DPYNYTFLRQLNVLELFLDCITEPNEKLVEFGVGGICNASVDPAN   96 (178)
Q Consensus        20 ~~ylq~LV~efq~t~~~e~keqvlanLaNfAy---DP~N~~~LrqL~vidlfld~L~~~n~~l~EfAiggLcNL~~D~~n   96 (178)
                      -+-+..|.+-.++  ++|.+..+..+|++|..   +|..-.     .+++++...+..++..+.+-|+.++..++.....
T Consensus        48 ~~lip~l~~~~~~--~~ev~~~~~~~l~~~~~~~~~~~~~~-----~ll~~l~~l~~~~~~~Vr~~a~~~l~~i~~~~~~  120 (588)
T d1b3ua_          48 SELLPFLTDTIYD--EDEVLLALAEQLGTFTTLVGGPEYVH-----CLLPPLESLATVEETVVRDKAVESLRAISHEHSP  120 (588)
T ss_dssp             HTHHHHHHHTCCC--CHHHHHHHHHHHTTCSGGGTSGGGGG-----GGHHHHHHHTTSSCHHHHHHHHHHHHHHHTTSCH
T ss_pred             HHHHHHHHHHhcC--cHHHHHHHHHHHHHHHHHcCChhHHH-----HHHHHHHHHccCCCHHHHHHHHHHHHHHHHhCCH
Confidence            3444444443333  34667777778888873   454332     3467777888888889999999999998765433


Q ss_pred             hHHhhhcCC-hhHHHHhhcCCchhHHHHHHHHHHHhcCCcccccccchHHHHHHHHhhhhcccchhHHHhHHHHHHhhc
Q 030369           97 AAIITKSGG-IPLIIECLSSPVRNTVNHALGALYYLCSMSTKEEILKPEVVDVIRRYAAAESVNVSFSNLAKAFLDKHV  174 (178)
Q Consensus        97 k~~I~~~gG-i~~li~lLsS~~~evv~~AlttL~~L~~~~sr~~I~~p~ll~ll~~~~~~~~~~~~~~nla~~fL~~~~  174 (178)
                      ... .  +. +|.+.++..++.......|...+-.+....+ .. ..+.++..+.+...  +.++.++..|..-+..++
T Consensus       121 ~~~-~--~~l~p~i~~L~~~~~~~~r~~a~~ll~~~~~~~~-~~-~~~~l~~~~~~l~~--D~~~~VR~~a~~~l~~~~  192 (588)
T d1b3ua_         121 SDL-E--AHFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVS-SA-VKAELRQYFRNLCS--DDTPMVRRAAASKLGEFA  192 (588)
T ss_dssp             HHH-H--HTHHHHHHHHHTCSSHHHHHHHGGGHHHHTTTSC-HH-HHHHHHHHHHHHHT--CSCHHHHHHHHHHHHHHH
T ss_pred             HHH-H--HHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhh-HH-HHHHHHHHHHHHhc--cCCHHHHHHHHHHHHHHH
Confidence            322 1  12 4555566666555555555554444432211 11 12334455544444  335677777665555443

>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin beta2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.06  E-value=0.41  Score=41.90  Aligned_cols=113  Identities=9%  Similarity=0.057  Sum_probs=80.8

Q ss_pred             ChHHHHHHHHHHhhcCChHHHHHHHHHHhhhhccCcccHHHhhh--ccChHHHHhhhcCCcHHHHHHHHHHHHhhcC---
Q 030369           18 PRLQYLQELVSQFQNSTDEERKEKIVANLANFAYDPYNYTFLRQ--LNVLELFLDCITEPNEKLVEFGVGGICNASV---   92 (178)
Q Consensus        18 ~R~~ylq~LV~efq~t~~~e~keqvlanLaNfAyDP~N~~~Lrq--L~vidlfld~L~~~n~~l~EfAiggLcNL~~---   92 (178)
                      .-++.+-.++.++-.+++-..||.++..|.-.+..+..  .+..  -++++.++..|..+++.+++-|.-+|..+|.   
T Consensus       391 ~il~~~l~~l~~~l~s~~~~~reaa~~alg~i~eg~~~--~~~~~l~~li~~l~~~l~d~~~~Vr~~a~~~l~~~~~~~~  468 (888)
T d1qbkb_         391 ELLPHILPLLKELLFHHEWVVKESGILVLGAIAEGCMQ--GMIPYLPELIPHLIQCLSDKKALVRSITCWTLSRYAHWVV  468 (888)
T ss_dssp             SSHHHHHHHHHHTTTSSSHHHHHHHHHHHHHHTTTSHH--HHTTTHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTHHHHH
T ss_pred             HHHHHHHHHHHHhhccchhHHHHHHHHHhhhhhhhHHH--HhcccchhhhHHHHHhccCCCHHHHHHHHHHHHHHHHHhh
Confidence            44677777888888888889999988888877754321  2222  2578899999999999988877777766552   


Q ss_pred             CchhhHHhhhcCChhHHHHhhcCCchhHHHHHHHHHHHhcCC
Q 030369           93 DPANAAIITKSGGIPLIIECLSSPVRNTVNHALGALYYLCSM  134 (178)
Q Consensus        93 D~~nk~~I~~~gGi~~li~lLsS~~~evv~~AlttL~~L~~~  134 (178)
                      +.....++  ..-++.+...+.++++.|...|..+|..++..
T Consensus       469 ~~~~~~~~--~~~l~~ll~~l~d~~~~V~~~a~~al~~l~~~  508 (888)
T d1qbkb_         469 SQPPDTYL--KPLMTELLKRILDSNKRVQEAACSAFATLEEE  508 (888)
T ss_dssp             SSCHHHHT--TTHHHHHHHHHSSSCHHHHHHHHHHHHHHHHH
T ss_pred             hhhhhhhh--hhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence            21222232  23577888888888899999999999888744

>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.93  E-value=0.97  Score=34.53  Aligned_cols=149  Identities=13%  Similarity=0.151  Sum_probs=85.6

Q ss_pred             HHHHHHHHHhhcC-ChHHHHHHHHHHhhhhc--cCcccHHHhhhccChHHHHhhhcCC--cHHHHHHHHHHHHhhcCCch
Q 030369           21 QYLQELVSQFQNS-TDEERKEKIVANLANFA--YDPYNYTFLRQLNVLELFLDCITEP--NEKLVEFGVGGICNASVDPA   95 (178)
Q Consensus        21 ~ylq~LV~efq~t-~~~e~keqvlanLaNfA--yDP~N~~~LrqL~vidlfld~L~~~--n~~l~EfAiggLcNL~~D~~   95 (178)
                      +++..|++...+. .+...++.++..|.-+.  +++.-.. -.--.+++.++..+..+  +..+..-|+-++++++.-..
T Consensus       127 ~~~~~l~~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~-~~~~~il~~~~~~l~~~~~~~~v~~~a~~~l~~~~~~~~  205 (458)
T d1ibrb_         127 ELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQ-DKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTK  205 (458)
T ss_dssp             THHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCGGGTG-GGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTH
T ss_pred             chhHHHHHHHHhhcchHHHHHHHHHHHHHHHhhccchhhh-hhHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHhhh
Confidence            5566666666543 34556667777666554  3332111 11134678888888754  56788888888888864321


Q ss_pred             h--hHHhhhcCChhHHHHhhcCCchhHHHHHHHHHHHhcCC--cccccccchHHHHHHHHhhhhcccchhHHHhHHHHHH
Q 030369           96 N--AAIITKSGGIPLIIECLSSPVRNTVNHALGALYYLCSM--STKEEILKPEVVDVIRRYAAAESVNVSFSNLAKAFLD  171 (178)
Q Consensus        96 n--k~~I~~~gGi~~li~lLsS~~~evv~~AlttL~~L~~~--~sr~~I~~p~ll~ll~~~~~~~~~~~~~~nla~~fL~  171 (178)
                      .  ........-.+.+..++.++++++...++.++..++..  ..-.....+.+..++.....+.  +..++--|.-|+.
T Consensus       206 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~--~~~~~~~a~~~l~  283 (458)
T d1ibrb_         206 ANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSD--IDEVALQGIEFWS  283 (458)
T ss_dssp             HHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGCTTTTTTTHHHHHHHHHHCS--SHHHHHHHHHHHH
T ss_pred             hhhhhHHHHHHhHhhHHHHhcCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhccc--cHHHHHHHHHHHH
Confidence            1  11222222345677778999999999999999888743  1112222344444444444433  3455555555554


Q ss_pred             h
Q 030369          172 K  172 (178)
Q Consensus       172 ~  172 (178)
                      .
T Consensus       284 ~  284 (458)
T d1ibrb_         284 N  284 (458)
T ss_dssp             H
T ss_pred             H
Confidence            3

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.67  E-value=0.56  Score=41.73  Aligned_cols=91  Identities=13%  Similarity=0.150  Sum_probs=61.2

Q ss_pred             HHHHhhhcCCcHHHHHHHHHHHHhhc-CCchhhHHhhhcCChhHHHHhhcCCchhHHHHHHHHHHHhcCCcc--ccccc-
Q 030369           66 ELFLDCITEPNEKLVEFGVGGICNAS-VDPANAAIITKSGGIPLIIECLSSPVRNTVNHALGALYYLCSMST--KEEIL-  141 (178)
Q Consensus        66 dlfld~L~~~n~~l~EfAiggLcNL~-~D~~nk~~I~~~gGi~~li~lLsS~~~evv~~AlttL~~L~~~~s--r~~I~-  141 (178)
                      +.++..+..+++.+...++.||.-++ .||.        .-+|.+.++|+++++.+...+++++.+++....  -.... 
T Consensus       931 ~~L~~~~~~~~~~vr~~~a~~lg~L~~~~~~--------~~lp~L~~~l~~~~~~~r~~ai~~l~~~~~~~~~~~~~~l~ 1002 (1207)
T d1u6gc_         931 ALLLKHCECAEEGTRNVVAECLGKLTLIDPE--------TLLPRLKGYLISGSSYARSSVVTAVKFTISDHPQPIDPLLK 1002 (1207)
T ss_dssp             HHHTTCCCCSSTTHHHHHHHHHHHHHHSSGG--------GTHHHHTTTSSSSCHHHHHHHHHHTGGGCCSSCCTHHHHHH
T ss_pred             HHHHHHhCCCcHHHHHHHHHHHHHHHhcCHH--------HHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcchhhHHHHH
Confidence            44555556667778888888888775 4553        237899999999999999999999999987632  22222 


Q ss_pred             --chHHHHHHHHhhhhcccchhHHHhHHHHH
Q 030369          142 --KPEVVDVIRRYAAAESVNVSFSNLAKAFL  170 (178)
Q Consensus       142 --~p~ll~ll~~~~~~~~~~~~~~nla~~fL  170 (178)
                        .|+++..|.   .   .+..++..|-.-|
T Consensus      1003 ~li~~ll~~l~---d---~~~~vR~~al~~l 1027 (1207)
T d1u6gc_        1003 NCIGDFLKTLE---D---PDLNVRRVALVTF 1027 (1207)
T ss_dssp             HHSTTTHHHHS---S---SSTHHHHHHHHHH
T ss_pred             HHHHHHHHHhC---C---CCHHHHHHHHHHH
Confidence              466666552   2   2456666665444

>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=89.84  E-value=1.1  Score=37.21  Aligned_cols=136  Identities=13%  Similarity=0.169  Sum_probs=71.7

Q ss_pred             HHHHHHhhcCChHHHHHHHHHHhhhhc-cC-ccc-HHHhhhccChHHHHhhhcCC-cHHHHHHHHHHHHhhcCC--chhh
Q 030369           24 QELVSQFQNSTDEERKEKIVANLANFA-YD-PYN-YTFLRQLNVLELFLDCITEP-NEKLVEFGVGGICNASVD--PANA   97 (178)
Q Consensus        24 q~LV~efq~t~~~e~keqvlanLaNfA-yD-P~N-~~~LrqL~vidlfld~L~~~-n~~l~EfAiggLcNL~~D--~~nk   97 (178)
                      +.|+.-+.+ ++...|.++-..++.++ +| |.| |+     +.++.++..+.++ ++..++-|.-+|..+|-+  +...
T Consensus        98 ~~ll~~l~~-~~~~vr~~~a~~i~~i~~~~~p~~~wp-----eli~~L~~~~~s~~~~~~~~~al~~l~~i~e~~~~~~~  171 (861)
T d2bpta1          98 TNALTALVS-IEPRIANAAAQLIAAIADIELPHGAWP-----ELMKIMVDNTGAEQPENVKRASLLALGYMCESADPQSQ  171 (861)
T ss_dssp             HHHHHHHTC-SSHHHHHHHHHHHHHHHHHHGGGTCCH-----HHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHTSSTTSS
T ss_pred             HHHHHHHcC-CCHHHHHHHHHHHHHHHHHhCCcCchH-----HHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhhHHHH
Confidence            444444443 35666666555566665 33 654 66     3567777888765 456666777777777633  3332


Q ss_pred             HHhhhcC-ChhHHHHhh--cCCchhHHHHHHHHHHHhcCC-cc--cccccchHHHHHHHHhhhhcccchhHHHhHH
Q 030369           98 AIITKSG-GIPLIIECL--SSPVRNTVNHALGALYYLCSM-ST--KEEILKPEVVDVIRRYAAAESVNVSFSNLAK  167 (178)
Q Consensus        98 ~~I~~~g-Gi~~li~lL--sS~~~evv~~AlttL~~L~~~-~s--r~~I~~p~ll~ll~~~~~~~~~~~~~~nla~  167 (178)
                      ..+-... =++.+++.+  ..++.++...|+.++..++.. ..  ......+.+++.+...-.++  ++.++..|.
T Consensus       172 ~~~~~~~~il~~i~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~~~~~  245 (861)
T d2bpta1         172 ALVSSSNNILIAIVQGAQSTETSKAVRLAALNALADSLIFIKNNMEREGERNYLMQVVCEATQAE--DIEVQAAAF  245 (861)
T ss_dssp             TTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHHTCS--CHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHhHhHHhhhhhhHHHHhHHHHhcCC--CHHHHHHHH
Confidence            2221100 022333333  344578889999999888754 11  11111345555555444433  344444433

>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin beta2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.55  E-value=0.52  Score=41.19  Aligned_cols=106  Identities=12%  Similarity=0.066  Sum_probs=61.3

Q ss_pred             ChHHHHhhhcCCcHHHHHHHHHHHHhhcCCc--hhhHHhhhcCChhHHHHhhcCCchhHHHHHHHHHHHhcCC---cccc
Q 030369           64 VLELFLDCITEPNEKLVEFGVGGICNASVDP--ANAAIITKSGGIPLIIECLSSPVRNTVNHALGALYYLCSM---STKE  138 (178)
Q Consensus        64 vidlfld~L~~~n~~l~EfAiggLcNL~~D~--~nk~~I~~~gGi~~li~lLsS~~~evv~~AlttL~~L~~~---~sr~  138 (178)
                      +++.+.+.+.+++...+|-|+.++.-++-..  ..+.++-  .-++.|+++|+++++.|...|.-+|-.++..   ....
T Consensus       396 ~l~~l~~~l~s~~~~~reaa~~alg~i~eg~~~~~~~~l~--~li~~l~~~l~d~~~~Vr~~a~~~l~~~~~~~~~~~~~  473 (888)
T d1qbkb_         396 ILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIPYLP--ELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPD  473 (888)
T ss_dssp             HHHHHHHTTTSSSHHHHHHHHHHHHHHTTTSHHHHTTTHH--HHHHHHHHHTTSSCHHHHHHHHHHHHHTHHHHHSSCHH
T ss_pred             HHHHHHHhhccchhHHHHHHHHHhhhhhhhHHHHhcccch--hhhHHHHHhccCCCHHHHHHHHHHHHHHHHHhhhhhhh
Confidence            3455566777788888888777766554221  1111111  2367788889999999888888777665532   1112


Q ss_pred             cccchHHHHHHHHhhhhcccchhHHHhHHHHHHhhc
Q 030369          139 EILKPEVVDVIRRYAAAESVNVSFSNLAKAFLDKHV  174 (178)
Q Consensus       139 ~I~~p~ll~ll~~~~~~~~~~~~~~nla~~fL~~~~  174 (178)
                      .. .++++..+...-..+  +++++..|...|..++
T Consensus       474 ~~-~~~~l~~ll~~l~d~--~~~V~~~a~~al~~l~  506 (888)
T d1qbkb_         474 TY-LKPLMTELLKRILDS--NKRVQEAACSAFATLE  506 (888)
T ss_dssp             HH-TTTHHHHHHHHHSSS--CHHHHHHHHHHHHHHH
T ss_pred             hh-hhhhHHHHHHHhcCC--CHHHHHHHHHHHHHHH
Confidence            22 234444443333322  5788777766655443

>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.41  E-value=0.82  Score=38.25  Aligned_cols=110  Identities=17%  Similarity=0.169  Sum_probs=66.0

Q ss_pred             cChHHHHhhhcCC--cHHHHHHHHHHHHhhcCCchhhHHhhh-cCChhHHHHhhcC--CchhHHHHHHHHHHHhcCCc-c
Q 030369           63 NVLELFLDCITEP--NEKLVEFGVGGICNASVDPANAAIITK-SGGIPLIIECLSS--PVRNTVNHALGALYYLCSMS-T  136 (178)
Q Consensus        63 ~vidlfld~L~~~--n~~l~EfAiggLcNL~~D~~nk~~I~~-~gGi~~li~lLsS--~~~evv~~AlttL~~L~~~~-s  136 (178)
                      ++++.++..+.++  ++.+.+-|+.+|.-+|-+......... ..-++.+++.+.+  ++.++...|+.+++.+...- .
T Consensus       128 eli~~L~~~l~~~~~~~~~~~~~l~~l~~i~~~~~~~~~~~~~~~il~~i~~~l~~~~~~~~v~~~a~~~l~~~~~~~~~  207 (876)
T d1qgra_         128 ELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKA  207 (876)
T ss_dssp             THHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHH
T ss_pred             HHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHcCcCccHHHHHHHHHHHHHHHHHhhh
Confidence            4678888888654  467777778888777644322222111 1235777888743  45688899999988776441 1


Q ss_pred             --cccccchHHHHHHHHhhhhcccchhHHHhHHHHHHhhc
Q 030369          137 --KEEILKPEVVDVIRRYAAAESVNVSFSNLAKAFLDKHV  174 (178)
Q Consensus       137 --r~~I~~p~ll~ll~~~~~~~~~~~~~~nla~~fL~~~~  174 (178)
                        ......+-+++.+...-.+.  +++++..|.-.|.+.+
T Consensus       208 ~~~~~~~~~~i~~~l~~~~~~~--~~~v~~~~~~~l~~l~  245 (876)
T d1qgra_         208 NFDKESERHFIMQVVCEATQCP--DTRVRVAALQNLVKIM  245 (876)
T ss_dssp             HHTSHHHHHHHHHHHHHHTTCS--SHHHHHHHHHHHHHHH
T ss_pred             hhhHHHHHHHHHHHHHHHhcCC--CHHHHHHHHHHHHHHH
Confidence              11122355677776666544  4666666666555443