Citrus Sinensis ID: 030370

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------18
Protein Sequence
MCTISIFPYWLIGFYLACWPVILVGRSLLGGLGNNLSGLSSTSHEMASGNFLSQQQRTFIQMRTVLKVVDNSGAKTVMCIQPLKGRKVARLGDTIVASVKEAMPTGKVKKGQVVHAVVVRAAMQHGRFDGSEVRFDDNAVVLVNKAGEPTGTRVFGPVPHELRRKKHVSILTLAEHLA
Secondary Structure (PSIPRED)
ccEEEcHHHHHHHHHHHHcHHHHHHHHHHcccccccccccccccccccccccccccccccccccEEEEEccccccEEEEEEEEccccccccccEEEEEEEccccccccEEccEEEEEEEEEEccEEcccccEEEEcccEEEEEccccccccEEEcccHHHHHHcccccEEEEcccccc
Secondary Structure Prediction (SSPRO)
ccEEEEcHHHHHHHHHccccEEEEHHHHHccccccccccccccHHHHcccHHHHHHHHHHHHHHHHEEcccccccEEEEEEEccccccEccccEEEEEEEEEccccccccccEEEEEEEEccccEEcccccEEcccccEEEEEcccccEccccEcccEccHHHHcccHHHHHHccccc
Coil and Loop (DISEMBL)
mctisifpyWLIGFYLACWPVILVGRSllgglgnnlsglsstshemasgnflSQQQRTFIQMRTVLKVvdnsgaktvmciqplkgrkvarlGDTIVASVKeamptgkvkkgQVVHAVVVRAAMQhgrfdgsevrfddnAVVLVNkageptgtrvfgpvphelrrkKHVSILTLAEHLA
Flexible Loop (DISEMBL)
MCTISIFPYWLIGFYLACWPVILVGRSLLGGLGNNLSGLSSTSHEMASGNFLSQQQRTFIQMRTVLKVvdnsgaktvmciqplkgrkvarlGDTIVASvkeamptgkvkkgqvVHAVVVRAAMQhgrfdgsevrfdDNAVVLvnkageptgtrvfgpvphelrrkkhvsiltlaehla
Low Complexity Region (SEG)
MCTISIFPYWLIGFYLACWPVILVgrsllgglgnnlsglsstsHEMASGNFLSQQQRTFIQMRTVLKVVDNSGAKTVMCIQPLKGRKVARLGDTIVASVKEAMPTGkvkkgqvvhavvvraaMQHGRFDGSEVRFDDNAVVLVNKAGEPTGTRVFGPVPHELRRKKHVSILTLAEHLA
Disordered region (IsUnstruct)
*CTISIFPYWLIGFYLACWPVILVGRSLLGGLGNNL******************QQRTFIQMRTVLKVVDNSGAKTVMCIQPLKGRKVARLGDTIVASVKEAMPTGKVKKGQVVHAVVVRAAMQHGRFDGSEVRFDDNAVVLVNKAGEPTGTRVFGPVPHEL****HVSIL*******
Disordered Region (DISOPRED)
*CTISIFPYWLIGFYLACWPVILVGRSLLG*************************QRTFIQMRTVLKVVDNSGAKTVMCIQPLKGRKVARLGDTIVASVKEAMPTGKVKKGQVVHAVVVRAAMQHGRFDGSEVRFDDNAVVLVNKAGEPTGTRVFGPVPHELRRKKHVSILTLAEHL*
Disordered Region (DISEMBL)
MCTISIFPYWLIGFYLACWPVILVGRSLLGGLGNNLSGLSSTSHEMASGNFLSQQQRTFIQMRTVLKVVDNSGAKTVMCIQPLKGRKVARLGDTIVASVKEAMPTGKVKKGQVVHAVVVRAAMQHGRFDGSEVRFDDNAVVLVNKAGEPTGTRVFGPVPHELRRKKHVSILTLAEHLA
Disordered Region (DISPRO)
MCTISIFPYWLIGFYLACWPVILVGRSLLGGLGNNLSGLSSTSHEMASGNFLSQQQRTFIQMRTVLKVVDNSGAKTVMCIQPLKGRKVARLGDTIVASVKEAMPTGKVKKGQVVHAVVVRAAMQHGRFDGSEVRFDDNAVVLVNKAGEPTGTRVFGPVPHELRRKKHVSILTLAEH**
Transmembrane Helix (TMHMM)
iiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
oooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MCTISIFPYWLIGFYLACWPVILVGRSLLGGLGNNLSGLSSTSHEMASGNFLSQQQRTFIQMRTVLKVVDNSGAKTVMCIQPLKGRKVARLGDTIVASVKEAMPTGKVKKGQVVHAVVVRAAMQHGRFDGSEVRFDDNAVVLVNKAGEPTGTRVFGPVPHELRRKKHVSILTLAEHLA
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	178	2.2.26 [Sep-21-2011]
Q9A8U3	122	50S ribosomal protein L14	yes	no	0.668	0.975	0.586	7e-33
B8H4E4	122	50S ribosomal protein L14	yes	no	0.668	0.975	0.586	7e-33
B6JEU3	122	50S ribosomal protein L14	yes	no	0.668	0.975	0.603	8e-33
B2IK72	122	50S ribosomal protein L14	yes	no	0.668	0.975	0.595	1e-32
B0T2D2	122	50S ribosomal protein L14	yes	no	0.668	0.975	0.586	1e-32
Q1QN20	122	50S ribosomal protein L14	yes	no	0.668	0.975	0.586	1e-32
Q39XZ6	122	50S ribosomal protein L14	yes	no	0.668	0.975	0.561	2e-32
A8IAQ6	122	50S ribosomal protein L14	no	no	0.668	0.975	0.595	2e-32
A1ALV1	122	50S ribosomal protein L14	yes	no	0.668	0.975	0.578	2e-32
Q8UE28	122	50S ribosomal protein L14	yes	no	0.668	0.975	0.578	2e-32

>sp|Q9A8U3|RL14_CAUCR 50S ribosomal protein L14 OS=Caulobacter crescentus (strain ATCC 19089 / CB15) GN=rplN PE=3 SV=1

 Score =  139 bits (351), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 71/121 (58%), Positives = 87/121 (71%), Gaps = 2/121 (1%)

Query: 59  FIQMRTVLKVVDNSGAKTVMCIQPL--KGRKVARLGDTIVASVKEAMPTGKVKKGQVVHA 116
            IQM+T L+V DNSGA+ VMCI+ L   GR+ A +GD IV SVKEA+P G+VKKG V+ A
Sbjct: 1   MIQMQTNLEVADNSGARRVMCIKVLGGAGRRYASVGDVIVVSVKEAIPRGRVKKGDVLRA 60

Query: 117 VVVRAAMQHGRFDGSEVRFDDNAVVLVNKAGEPTGTRVFGPVPHELRRKKHVSILTLAEH 176
           VVVR      R DGS +RFD NA V+VNK  EP GTR+FGPVP ELR K H+ I++LA  
Sbjct: 61  VVVRVNQNLKRKDGSVIRFDKNAAVIVNKQSEPVGTRIFGPVPRELRAKNHMKIISLAPE 120

Query: 177 L 177
           +
Sbjct: 121 V 121

Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome.
Caulobacter crescentus (strain ATCC 19089 / CB15) (taxid: 190650)

>sp|B8H4E4|RL14_CAUCN 50S ribosomal protein L14 OS=Caulobacter crescentus (strain NA1000 / CB15N) GN=rplN PE=3 SV=1

 Score =  139 bits (351), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 71/121 (58%), Positives = 87/121 (71%), Gaps = 2/121 (1%)

Query: 59  FIQMRTVLKVVDNSGAKTVMCIQPL--KGRKVARLGDTIVASVKEAMPTGKVKKGQVVHA 116
            IQM+T L+V DNSGA+ VMCI+ L   GR+ A +GD IV SVKEA+P G+VKKG V+ A
Sbjct: 1   MIQMQTNLEVADNSGARRVMCIKVLGGAGRRYASVGDVIVVSVKEAIPRGRVKKGDVLRA 60

Query: 117 VVVRAAMQHGRFDGSEVRFDDNAVVLVNKAGEPTGTRVFGPVPHELRRKKHVSILTLAEH 176
           VVVR      R DGS +RFD NA V+VNK  EP GTR+FGPVP ELR K H+ I++LA  
Sbjct: 61  VVVRVNQNLKRKDGSVIRFDKNAAVIVNKQSEPVGTRIFGPVPRELRAKNHMKIISLAPE 120

Query: 177 L 177
           +
Sbjct: 121 V 121

Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome.

Caulobacter crescentus (strain NA1000 / CB15N) (taxid: 565050)

>sp|B6JEU3|RL14_OLICO 50S ribosomal protein L14 OS=Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5) GN=rplN PE=3 SV=1

 Score =  139 bits (351), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 73/121 (60%), Positives = 86/121 (71%), Gaps = 2/121 (1%)

Query: 59  FIQMRTVLKVVDNSGAKTVMCIQPLKG--RKVARLGDTIVASVKEAMPTGKVKKGQVVHA 116
            IQM+T L V DNSGA+ VMCI+ L G  R+ A +GD IV SVKEA+P GKVKKG V+ A
Sbjct: 1   MIQMQTNLDVADNSGARRVMCIKVLGGSKRRYATVGDIIVVSVKEAIPRGKVKKGDVMKA 60

Query: 117 VVVRAAMQHGRFDGSEVRFDDNAVVLVNKAGEPTGTRVFGPVPHELRRKKHVSILTLAEH 176
           VVVR A    R DGS +RFD NA VLVN   EP GTR+FGPVP ELR K H+ I++LA  
Sbjct: 61  VVVRVAKDIRRADGSVIRFDRNAAVLVNNQSEPVGTRIFGPVPRELRAKNHMKIISLAPE 120

Query: 177 L 177
           +
Sbjct: 121 V 121

Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome.

Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5) (taxid: 504832)

>sp|B2IK72|RL14_BEII9 50S ribosomal protein L14 OS=Beijerinckia indica subsp. indica (strain ATCC 9039 / DSM 1715 / NCIB 8712) GN=rplN PE=3 SV=1

 Score =  139 bits (350), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 72/121 (59%), Positives = 86/121 (71%), Gaps = 2/121 (1%)

Query: 59  FIQMRTVLKVVDNSGAKTVMCIQPLKG--RKVARLGDTIVASVKEAMPTGKVKKGQVVHA 116
            IQM+T L V DNSGA+ VMCI+ L G  RK A +GD IV SVKEA+P G+VKKG V+ A
Sbjct: 1   MIQMQTNLDVADNSGARRVMCIKVLGGSKRKYAGVGDIIVVSVKEAIPRGRVKKGDVMKA 60

Query: 117 VVVRAAMQHGRFDGSEVRFDDNAVVLVNKAGEPTGTRVFGPVPHELRRKKHVSILTLAEH 176
           VVVR A    R DGS +RFD NA VL+N   EP GTR+FGPVP ELR K H+ I++LA  
Sbjct: 61  VVVRTAKDIKRADGSVIRFDTNAAVLINNQSEPVGTRIFGPVPRELRAKNHMKIISLAPE 120

Query: 177 L 177
           +
Sbjct: 121 V 121

Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome.

Beijerinckia indica subsp. indica (strain ATCC 9039 / DSM 1715 / NCIB 8712) (taxid: 395963)

>sp|B0T2D2|RL14_CAUSK 50S ribosomal protein L14 OS=Caulobacter sp. (strain K31) GN=rplN PE=3 SV=1

 Score =  139 bits (349), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 71/121 (58%), Positives = 87/121 (71%), Gaps = 2/121 (1%)

Query: 59  FIQMRTVLKVVDNSGAKTVMCIQPL--KGRKVARLGDTIVASVKEAMPTGKVKKGQVVHA 116
            IQM+T L+V DNSGA+ VMCI+ L   GR+ A +GD IV SVKEA+P G+VKKG V+ A
Sbjct: 1   MIQMQTNLEVADNSGARRVMCIKVLGGAGRRYASVGDVIVVSVKEAIPRGRVKKGDVLRA 60

Query: 117 VVVRAAMQHGRFDGSEVRFDDNAVVLVNKAGEPTGTRVFGPVPHELRRKKHVSILTLAEH 176
           VVVR      R DGS +RFD NA V+VNK  EP GTR+FGPVP ELR K H+ I++LA  
Sbjct: 61  VVVRVNQGMKRKDGSLIRFDKNAAVIVNKQSEPVGTRIFGPVPRELRAKNHMKIISLAPE 120

Query: 177 L 177
           +
Sbjct: 121 V 121

Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome.

Caulobacter sp. (strain K31) (taxid: 366602)

>sp|Q1QN20|RL14_NITHX 50S ribosomal protein L14 OS=Nitrobacter hamburgensis (strain X14 / DSM 10229) GN=rplN PE=3 SV=1

 Score =  139 bits (349), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 71/121 (58%), Positives = 86/121 (71%), Gaps = 2/121 (1%)

Query: 59  FIQMRTVLKVVDNSGAKTVMCIQPLKG--RKVARLGDTIVASVKEAMPTGKVKKGQVVHA 116
            IQM+T L V DNSGA+ VMCI+ L G  R+ A +GD IV S+KEA+P GKVKKG V+ A
Sbjct: 1   MIQMQTNLDVADNSGARRVMCIKVLGGSKRRYATVGDIIVVSIKEAIPRGKVKKGDVMKA 60

Query: 117 VVVRAAMQHGRFDGSEVRFDDNAVVLVNKAGEPTGTRVFGPVPHELRRKKHVSILTLAEH 176
           VVVR A    R DGS +RFD NA VL+N   EP GTR+FGPVP ELR K H+ I++LA  
Sbjct: 61  VVVRVAKDIRRADGSVIRFDRNAAVLINNQSEPVGTRIFGPVPRELRAKNHMKIISLAPE 120

Query: 177 L 177
           +
Sbjct: 121 V 121

Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome.

Nitrobacter hamburgensis (strain X14 / DSM 10229) (taxid: 323097)

>sp|Q39XZ6|RL14_GEOMG 50S ribosomal protein L14 OS=Geobacter metallireducens (strain GS-15 / ATCC 53774 / DSM 7210) GN=rplN PE=3 SV=1

 Score =  138 bits (348), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 68/121 (56%), Positives = 88/121 (72%), Gaps = 2/121 (1%)

Query: 59  FIQMRTVLKVVDNSGAKTVMCIQPLKG--RKVARLGDTIVASVKEAMPTGKVKKGQVVHA 116
            IQM+T+L V DNSGA+ + CI+ L G  RK A +GD IVASV+EA+P  KVKKG VV A
Sbjct: 1   MIQMQTILDVADNSGARKLFCIKVLGGSKRKYAGIGDIIVASVREAIPNSKVKKGDVVKA 60

Query: 117 VVVRAAMQHGRFDGSEVRFDDNAVVLVNKAGEPTGTRVFGPVPHELRRKKHVSILTLAEH 176
           V+VR A + GR DGS +RFDDN+ V++N   EP GTR+FGPV  ELR +K + I++LA  
Sbjct: 61  VIVRTAKEVGRLDGSYIRFDDNSAVVINNQREPVGTRIFGPVARELRARKFMKIVSLAPE 120

Query: 177 L 177
           +
Sbjct: 121 V 121

Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome.

Geobacter metallireducens (strain GS-15 / ATCC 53774 / DSM 7210) (taxid: 269799)

>sp|A8IAQ6|RL14_AZOC5 50S ribosomal protein L14 OS=Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / ORS 571) GN=rplN PE=3 SV=2

 Score =  138 bits (348), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 72/121 (59%), Positives = 86/121 (71%), Gaps = 2/121 (1%)

Query: 59  FIQMRTVLKVVDNSGAKTVMCIQPLKG--RKVARLGDTIVASVKEAMPTGKVKKGQVVHA 116
            IQM+T L V DNSGA+ VMCI+ L G  RK A +GD IV SVKEA+P G+VKKG V+ A
Sbjct: 1   MIQMQTNLDVADNSGARRVMCIKVLGGSKRKYAHVGDIIVVSVKEAIPRGRVKKGDVMKA 60

Query: 117 VVVRAAMQHGRFDGSEVRFDDNAVVLVNKAGEPTGTRVFGPVPHELRRKKHVSILTLAEH 176
           VVVR A    R DGS +RFD NA VL+N   EP GTR+FGPVP ELR K H+ I++LA  
Sbjct: 61  VVVRTAKDIRRVDGSVIRFDRNAAVLINNNKEPVGTRIFGPVPRELRAKNHMKIISLAPE 120

Query: 177 L 177
           +
Sbjct: 121 V 121

Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome.

Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / ORS 571) (taxid: 438753)

>sp|A1ALV1|RL14_PELPD 50S ribosomal protein L14 OS=Pelobacter propionicus (strain DSM 2379) GN=rplN PE=3 SV=1

 Score =  138 bits (348), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 70/121 (57%), Positives = 88/121 (72%), Gaps = 2/121 (1%)

Query: 59  FIQMRTVLKVVDNSGAKTVMCIQPLKG--RKVARLGDTIVASVKEAMPTGKVKKGQVVHA 116
            IQM+T+L V DNSGAK + CI+ L G  RK A +GD IVASV+EA+P  KVKKG VV A
Sbjct: 1   MIQMQTILDVADNSGAKKLFCIKVLGGSKRKYAGVGDIIVASVREALPNSKVKKGDVVKA 60

Query: 117 VVVRAAMQHGRFDGSEVRFDDNAVVLVNKAGEPTGTRVFGPVPHELRRKKHVSILTLAEH 176
           V+VR A + GR DGS +RFDDN+ V++N   EP GTR+FGPV  ELR KK + I++LA  
Sbjct: 61  VIVRTAKELGRPDGSYIRFDDNSGVVINNQKEPVGTRIFGPVARELRAKKFMKIISLAPE 120

Query: 177 L 177
           +
Sbjct: 121 V 121

Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome.

Pelobacter propionicus (strain DSM 2379) (taxid: 338966)

>sp|Q8UE28|RL14_AGRT5 50S ribosomal protein L14 OS=Agrobacterium tumefaciens (strain C58 / ATCC 33970) GN=rplN PE=3 SV=1

 Score =  138 bits (347), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 70/121 (57%), Positives = 87/121 (71%), Gaps = 2/121 (1%)

Query: 59  FIQMRTVLKVVDNSGAKTVMCIQPLKG--RKVARLGDTIVASVKEAMPTGKVKKGQVVHA 116
            IQM+T L V DNSGA+ VMCI+ L G  RK A +GD IV S+KEA+P G+VKKG V+ A
Sbjct: 1   MIQMQTNLDVADNSGARRVMCIKVLGGSKRKYASVGDIIVVSIKEAIPRGRVKKGDVMKA 60

Query: 117 VVVRAAMQHGRFDGSEVRFDDNAVVLVNKAGEPTGTRVFGPVPHELRRKKHVSILTLAEH 176
           VVVR A    R DGS +RFD+NA VL++   EP GTR+FGPVP ELR K H+ I++LA  
Sbjct: 61  VVVRTAKDIRRADGSVIRFDNNAAVLIDNKKEPIGTRIFGPVPRELRAKNHMKIISLAPE 120

Query: 177 L 177
           +
Sbjct: 121 V 121

Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome.

Agrobacterium tumefaciens (strain C58 / ATCC 33970) (taxid: 176299)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	178
297740749	166	unnamed protein product [Vitis vinifera]	0.870	0.933	0.780	2e-61
225443920	167	PREDICTED: 50S ribosomal protein L14-lik	0.870	0.928	0.775	4e-60
255570635	166	50S ribosomal protein L14, putative [Ric	0.870	0.933	0.8	8e-59
449490154	166	PREDICTED: 50S ribosomal protein L14-lik	0.870	0.933	0.806	6e-58
449441786	166	PREDICTED: 50S ribosomal protein L14-lik	0.870	0.933	0.8	4e-57
449433702	166	PREDICTED: 50S ribosomal protein L14-lik	0.870	0.933	0.8	1e-56
224110578	166	predicted protein [Populus trichocarpa]	0.853	0.915	0.769	6e-55
388499272	166	unknown [Medicago truncatula]	0.870	0.933	0.767	6e-55
356526999	166	PREDICTED: 50S ribosomal protein L14-lik	0.870	0.933	0.780	1e-54
20260394	172	unknown protein [Arabidopsis thaliana] g	0.853	0.883	0.722	2e-54

>gi|297740749|emb|CBI30931.3| unnamed protein product [Vitis vinifera]

 Score =  240 bits (612), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 121/155 (78%), Positives = 133/155 (85%)

Query: 24  VGRSLLGGLGNNLSGLSSTSHEMASGNFLSQQQRTFIQMRTVLKVVDNSGAKTVMCIQPL 83
           VGRS+ GGLGN  SG   TS +    NFLSQQQRTFIQMRTVLKVVDNSGAK VMCIQ L
Sbjct: 12  VGRSVFGGLGNISSGSLRTSLDSTWNNFLSQQQRTFIQMRTVLKVVDNSGAKKVMCIQAL 71

Query: 84  KGRKVARLGDTIVASVKEAMPTGKVKKGQVVHAVVVRAAMQHGRFDGSEVRFDDNAVVLV 143
           KG+K ARLGDTIVASVKEA P GKVKKG+VV+ VVVRAAMQ GR DGSEV+FDDNAVVL+
Sbjct: 72  KGKKGARLGDTIVASVKEAHPNGKVKKGEVVYGVVVRAAMQRGRCDGSEVKFDDNAVVLL 131

Query: 144 NKAGEPTGTRVFGPVPHELRRKKHVSILTLAEHLA 178
           +K G+P GTRVFGPVPHELR+KKH+ ILTLAEH+A
Sbjct: 132 DKQGQPRGTRVFGPVPHELRKKKHLKILTLAEHIA 166

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225443920|ref|XP_002278662.1| PREDICTED: 50S ribosomal protein L14-like [Vitis vinifera]

 Score =  235 bits (600), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 121/156 (77%), Positives = 133/156 (85%), Gaps = 1/156 (0%)

Query: 24  VGRSLLGGLGNNLSGLSSTSHEMASGNFLSQQQ-RTFIQMRTVLKVVDNSGAKTVMCIQP 82
           VGRS+ GGLGN  SG   TS +    NFLSQQQ RTFIQMRTVLKVVDNSGAK VMCIQ 
Sbjct: 12  VGRSVFGGLGNISSGSLRTSLDSTWNNFLSQQQQRTFIQMRTVLKVVDNSGAKKVMCIQA 71

Query: 83  LKGRKVARLGDTIVASVKEAMPTGKVKKGQVVHAVVVRAAMQHGRFDGSEVRFDDNAVVL 142
           LKG+K ARLGDTIVASVKEA P GKVKKG+VV+ VVVRAAMQ GR DGSEV+FDDNAVVL
Sbjct: 72  LKGKKGARLGDTIVASVKEAHPNGKVKKGEVVYGVVVRAAMQRGRCDGSEVKFDDNAVVL 131

Query: 143 VNKAGEPTGTRVFGPVPHELRRKKHVSILTLAEHLA 178
           ++K G+P GTRVFGPVPHELR+KKH+ ILTLAEH+A
Sbjct: 132 LDKQGQPRGTRVFGPVPHELRKKKHLKILTLAEHIA 167

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255570635|ref|XP_002526273.1| 50S ribosomal protein L14, putative [Ricinus communis] gi|223534404|gb|EEF36110.1| 50S ribosomal protein L14, putative [Ricinus communis]

 Score =  231 bits (590), Expect = 8e-59,   Method: Compositional matrix adjust.
 Identities = 124/155 (80%), Positives = 139/155 (89%)

Query: 24  VGRSLLGGLGNNLSGLSSTSHEMASGNFLSQQQRTFIQMRTVLKVVDNSGAKTVMCIQPL 83
           VGRS+LGGLG+NLSGL  TS++M S N++ QQ RTFIQMRTVLKVVDNSGAK VMCIQ L
Sbjct: 12  VGRSILGGLGSNLSGLMGTSNQMTSSNYMCQQLRTFIQMRTVLKVVDNSGAKKVMCIQAL 71

Query: 84  KGRKVARLGDTIVASVKEAMPTGKVKKGQVVHAVVVRAAMQHGRFDGSEVRFDDNAVVLV 143
           KG+K ARLGDTI+ASVKEAMP GKVKKG+VV+ VVVRAAMQ GR DGSEV+FDDNAVVLV
Sbjct: 72  KGKKGARLGDTIIASVKEAMPNGKVKKGKVVYGVVVRAAMQRGRCDGSEVKFDDNAVVLV 131

Query: 144 NKAGEPTGTRVFGPVPHELRRKKHVSILTLAEHLA 178
           +K G+P GTRVFGPVPHELR+KKHV ILTLAEH+A
Sbjct: 132 DKQGQPIGTRVFGPVPHELRKKKHVKILTLAEHIA 166

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449490154|ref|XP_004158523.1| PREDICTED: 50S ribosomal protein L14-like [Cucumis sativus]

 Score =  228 bits (582), Expect = 6e-58,   Method: Compositional matrix adjust.
 Identities = 125/155 (80%), Positives = 138/155 (89%)

Query: 24  VGRSLLGGLGNNLSGLSSTSHEMASGNFLSQQQRTFIQMRTVLKVVDNSGAKTVMCIQPL 83
           VGRSLLGGLGNNLSG  +TS+E    +F++QQQRTFIQMRTVLKVVDNSGAK VMCIQ L
Sbjct: 12  VGRSLLGGLGNNLSGSLTTSNETVCNSFITQQQRTFIQMRTVLKVVDNSGAKKVMCIQAL 71

Query: 84  KGRKVARLGDTIVASVKEAMPTGKVKKGQVVHAVVVRAAMQHGRFDGSEVRFDDNAVVLV 143
           KG+K ARLGDTIVASVKEA P GKVKKG+VV+ VVVRAAMQ GR DGSEV+FDDNAVVLV
Sbjct: 72  KGKKGARLGDTIVASVKEAHPNGKVKKGKVVYGVVVRAAMQKGRCDGSEVKFDDNAVVLV 131

Query: 144 NKAGEPTGTRVFGPVPHELRRKKHVSILTLAEHLA 178
           +K G+P GTRVFGPVPHELR+KKHV ILTLAEH+A
Sbjct: 132 DKQGQPIGTRVFGPVPHELRKKKHVKILTLAEHIA 166

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449441786|ref|XP_004138663.1| PREDICTED: 50S ribosomal protein L14-like [Cucumis sativus]

 Score =  226 bits (575), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 124/155 (80%), Positives = 137/155 (88%)

Query: 24  VGRSLLGGLGNNLSGLSSTSHEMASGNFLSQQQRTFIQMRTVLKVVDNSGAKTVMCIQPL 83
           VGRSLLGGLGNNLSG  +TS+E    +F++QQQRTFIQMRTVLKVVDNSGAK VMCIQ L
Sbjct: 12  VGRSLLGGLGNNLSGSLTTSNETVCNSFITQQQRTFIQMRTVLKVVDNSGAKKVMCIQAL 71

Query: 84  KGRKVARLGDTIVASVKEAMPTGKVKKGQVVHAVVVRAAMQHGRFDGSEVRFDDNAVVLV 143
           KG+K ARLGDTIVASVKEA P GKVKKG+VV+ VVVRAAMQ  R DGSEV+FDDNAVVLV
Sbjct: 72  KGKKGARLGDTIVASVKEAHPNGKVKKGKVVYGVVVRAAMQKDRCDGSEVKFDDNAVVLV 131

Query: 144 NKAGEPTGTRVFGPVPHELRRKKHVSILTLAEHLA 178
           +K G+P GTRVFGPVPHELR+KKHV ILTLAEH+A
Sbjct: 132 DKQGQPIGTRVFGPVPHELRKKKHVKILTLAEHIA 166

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449433702|ref|XP_004134636.1| PREDICTED: 50S ribosomal protein L14-like [Cucumis sativus] gi|449523537|ref|XP_004168780.1| PREDICTED: 50S ribosomal protein L14-like [Cucumis sativus]

 Score =  224 bits (571), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 124/155 (80%), Positives = 135/155 (87%)

Query: 24  VGRSLLGGLGNNLSGLSSTSHEMASGNFLSQQQRTFIQMRTVLKVVDNSGAKTVMCIQPL 83
           V RSLLGGLGNNLS L + S E    +F+SQQQRTFIQMRTVLKVVDNSGAK VMCIQ L
Sbjct: 12  VSRSLLGGLGNNLSTLLTASKESICSSFISQQQRTFIQMRTVLKVVDNSGAKKVMCIQAL 71

Query: 84  KGRKVARLGDTIVASVKEAMPTGKVKKGQVVHAVVVRAAMQHGRFDGSEVRFDDNAVVLV 143
           KG+K ARLGDTIVASVKEA P GKVKKG+VV+ VVVRAAMQ GR DGSEV+FDDNAVVLV
Sbjct: 72  KGKKGARLGDTIVASVKEAHPNGKVKKGKVVYGVVVRAAMQKGRCDGSEVKFDDNAVVLV 131

Query: 144 NKAGEPTGTRVFGPVPHELRRKKHVSILTLAEHLA 178
           +K G+P GTRVFGPVPHELR+KKHV ILTLAEH+A
Sbjct: 132 DKQGQPIGTRVFGPVPHELRKKKHVKILTLAEHIA 166

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224110578|ref|XP_002315564.1| predicted protein [Populus trichocarpa] gi|118484997|gb|ABK94363.1| unknown [Populus trichocarpa] gi|222864604|gb|EEF01735.1| predicted protein [Populus trichocarpa]

 Score =  218 bits (556), Expect = 6e-55,   Method: Compositional matrix adjust.
 Identities = 117/152 (76%), Positives = 128/152 (84%)

Query: 27  SLLGGLGNNLSGLSSTSHEMASGNFLSQQQRTFIQMRTVLKVVDNSGAKTVMCIQPLKGR 86
           SL  GLG N+S L ST+  M   NFLSQ QRTFIQMRTVLKVVDNSGAK VMCIQPLKGR
Sbjct: 15  SLFRGLGTNVSNLLSTATRMTWSNFLSQHQRTFIQMRTVLKVVDNSGAKKVMCIQPLKGR 74

Query: 87  KVARLGDTIVASVKEAMPTGKVKKGQVVHAVVVRAAMQHGRFDGSEVRFDDNAVVLVNKA 146
           K ARLGDTI+ASVKEA P GKVKKG VV  VVVRAAMQ GR DGSEV+FDDNAVV+++K 
Sbjct: 75  KGARLGDTIIASVKEAAPNGKVKKGAVVRGVVVRAAMQRGRCDGSEVKFDDNAVVIIDKQ 134

Query: 147 GEPTGTRVFGPVPHELRRKKHVSILTLAEHLA 178
           G+P G+RVFGPVPHELR+KKHV IL LAEH+A
Sbjct: 135 GQPVGSRVFGPVPHELRKKKHVKILALAEHIA 166

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388499272|gb|AFK37702.1| unknown [Medicago truncatula]

 Score =  218 bits (556), Expect = 6e-55,   Method: Compositional matrix adjust.
 Identities = 119/155 (76%), Positives = 129/155 (83%)

Query: 24  VGRSLLGGLGNNLSGLSSTSHEMASGNFLSQQQRTFIQMRTVLKVVDNSGAKTVMCIQPL 83
           VGRSL GGL NN  GL +TSHEM   ++ SQQQRTFIQMRTVLKVVDNSGAK VMCI+ L
Sbjct: 12  VGRSLFGGLSNNSPGLFTTSHEMTCNSYFSQQQRTFIQMRTVLKVVDNSGAKKVMCIRAL 71

Query: 84  KGRKVARLGDTIVASVKEAMPTGKVKKGQVVHAVVVRAAMQHGRFDGSEVRFDDNAVVLV 143
            G+K ARLGD I ASVKEA P GKVKKG VV AVVVRAAM  GR DGSEV+FDDNAVVLV
Sbjct: 72  AGKKGARLGDMIQASVKEAHPNGKVKKGAVVFAVVVRAAMPKGRCDGSEVKFDDNAVVLV 131

Query: 144 NKAGEPTGTRVFGPVPHELRRKKHVSILTLAEHLA 178
           +K G+P GTRVFGPVPHELR+KKHV ILTLA H+A
Sbjct: 132 DKQGQPIGTRVFGPVPHELRQKKHVKILTLAGHIA 166

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356526999|ref|XP_003532102.1| PREDICTED: 50S ribosomal protein L14-like isoform 1 [Glycine max] gi|356527001|ref|XP_003532103.1| PREDICTED: 50S ribosomal protein L14-like isoform 2 [Glycine max] gi|356527003|ref|XP_003532104.1| PREDICTED: 50S ribosomal protein L14-like isoform 3 [Glycine max]

 Score =  218 bits (554), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 121/155 (78%), Positives = 132/155 (85%)

Query: 24  VGRSLLGGLGNNLSGLSSTSHEMASGNFLSQQQRTFIQMRTVLKVVDNSGAKTVMCIQPL 83
           VGRSL GGL N+  GL +T HEM   N  SQQQRTFIQMRTVLKVVDNSGAK VMCIQ L
Sbjct: 12  VGRSLFGGLSNSSPGLFTTLHEMTCKNMFSQQQRTFIQMRTVLKVVDNSGAKKVMCIQAL 71

Query: 84  KGRKVARLGDTIVASVKEAMPTGKVKKGQVVHAVVVRAAMQHGRFDGSEVRFDDNAVVLV 143
           KG+K ARLGDTI+ASVKEA P GKVKKG+VV+ VVVRAAMQ GR DGSEV+FDDNAVVLV
Sbjct: 72  KGKKGARLGDTIIASVKEAHPNGKVKKGKVVYGVVVRAAMQKGRCDGSEVKFDDNAVVLV 131

Query: 144 NKAGEPTGTRVFGPVPHELRRKKHVSILTLAEHLA 178
           +K G+P GTRVFGPVPHELR+KKHV ILTLA H+A
Sbjct: 132 DKQGQPIGTRVFGPVPHELRQKKHVKILTLAGHIA 166

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|20260394|gb|AAM13095.1| unknown protein [Arabidopsis thaliana] gi|22136190|gb|AAM91173.1| unknown protein [Arabidopsis thaliana]

 Score =  217 bits (552), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 117/162 (72%), Positives = 131/162 (80%), Gaps = 10/162 (6%)

Query: 25  GRSLLGGLGNNLSGLSSTSHEMASGNFLSQQQR-TFIQMRTVLKVVDNSGAKTVMCIQPL 83
           GRSLLGGL NN+  ++S S+ M + + LSQQQR TFIQM TVLKVVDNSGAK VMCIQ L
Sbjct: 13  GRSLLGGL-NNVGSMNS-SNGMMNESILSQQQRRTFIQMGTVLKVVDNSGAKKVMCIQAL 70

Query: 84  KGRKVARLGDTIVASVKEAMPTGKVKKGQVVHAVVVRAAMQHGRFDGSEVRFDDNAVVLV 143
           KG+K ARLGDTIVASVKEAMP GKVKKG VV+ VVVRAAMQ GR DGSEVRFDDNAVVLV
Sbjct: 71  KGKKGARLGDTIVASVKEAMPNGKVKKGAVVYGVVVRAAMQRGRVDGSEVRFDDNAVVLV 130

Query: 144 NKAG-------EPTGTRVFGPVPHELRRKKHVSILTLAEHLA 178
           +          +P GTRVFGPVPHELR+KKH+ IL LA+H+A
Sbjct: 131 DSKDKNTKTDRQPIGTRVFGPVPHELRKKKHLKILALAQHVA 172

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	178
TAIR|locus:2161368	173	AT5G46160 [Arabidopsis thalian	0.747	0.768	0.647	3.7e-39
TAIR|locus:2007913	196	HLL "HUELLENLOS" [Arabidopsis	0.550	0.5	0.522	9.9e-31
TIGR_CMR|GSU_2847	122	GSU_2847 "ribosomal protein L1	0.646	0.942	0.478	1.6e-22
TIGR_CMR|SPO_0495	122	SPO_0495 "ribosomal protein L1	0.646	0.942	0.478	1.5e-21
TIGR_CMR|DET_0484	122	DET_0484 "ribosomal protein L1	0.646	0.942	0.461	6.3e-21
TIGR_CMR|CPS_0611	122	CPS_0611 "ribosomal protein L1	0.646	0.942	0.461	1.3e-20
UNIPROTKB|P66069	122	rplN "50S ribosomal protein L1	0.646	0.942	0.427	1.7e-20
UNIPROTKB|Q9KNZ4	123	rplN "50S ribosomal protein L1	0.646	0.934	0.466	9.2e-20
TIGR_CMR|VC_2586	123	VC_2586 "ribosomal protein L14	0.646	0.934	0.466	9.2e-20
TIGR_CMR|CBU_0248	122	CBU_0248 "ribosomal protein L1	0.646	0.942	0.452	1.9e-19

TAIR|locus:2161368 AT5G46160 [Arabidopsis thaliana (taxid:3702)]

 Score = 418 (152.2 bits), Expect = 3.7e-39, P = 3.7e-39
 Identities = 92/142 (64%), Positives = 101/142 (71%)

Query:    46 MASGNFLSQQQ--RTFIQMRTVLKVVDNSGAKTVMCIQPLKGRKVARLGDTIVASVKEAM 103
             M + + LSQQQ  RTFIQM TVLKVVDNSGAK VMCIQ LKG+K ARLGDTIVASVKEAM
Sbjct:    32 MMNESILSQQQQRRTFIQMGTVLKVVDNSGAKKVMCIQALKGKKGARLGDTIVASVKEAM 91

Query:   104 PTGXXXXXXXXXXXXXXXXMQHGRFDGSEVRFDDNAVVLVNKAG-------EPTGTRVFG 156
             P G                MQ GR DGSEVRFDDNAVVLV+          +P GTRVFG
Sbjct:    92 PNGKVKKGAVVYGVVVRAAMQRGRVDGSEVRFDDNAVVLVDSKDKNTKTDRQPIGTRVFG 151

Query:   157 PVPHELRRKKHVSILTLAEHLA 178
             PVPHELR+KKH+ IL LA+H+A
Sbjct:   152 PVPHELRKKKHLKILALAQHVA 173

GO:0003735 "structural constituent of ribosome" evidence=IEA;ISS

GO:0005840 "ribosome" evidence=IEA;ISS

GO:0006412 "translation" evidence=IEA;ISS

GO:0009507 "chloroplast" evidence=ISM

GO:0015934 "large ribosomal subunit" evidence=IEA

GO:0000394 "RNA splicing, via endonucleolytic cleavage and ligation" evidence=RCA

GO:0006354 "DNA-dependent transcription, elongation" evidence=RCA

GO:0009086 "methionine biosynthetic process" evidence=RCA

TAIR|locus:2007913 HLL "HUELLENLOS" [Arabidopsis thaliana (taxid:3702)]

 Score = 235 (87.8 bits), Expect = 9.9e-31, Sum P(2) = 9.9e-31
 Identities = 58/111 (52%), Positives = 68/111 (61%)

Query:    46 MASGNFLSQQQ-RTFIQMRTVLKVVDNSGAKTVMCIQPLKGRKVARLGDTIVASVKEA-- 102
             M +G+ LSQQQ RTFIQM T+LK VDNS AK VMCIQ L+G+K ARLGD IV SVKEA  
Sbjct:    34 MMNGSILSQQQHRTFIQMGTILKCVDNSCAKEVMCIQSLRGKKGARLGDIIVGSVKEANP 93

Query:   103 ----------MPTGXXXXXXXXXXXXXXXXMQHGRFDGSEVRFDDNAVVLV 143
                       +P G                M  GR DGS+V+FDDNA+V+V
Sbjct:    94 IVQKKVKKDAIPKGKVKKGMVVYGVVVRAAMPKGRADGSQVKFDDNAIVVV 144

GO:0003735 "structural constituent of ribosome" evidence=IEA;ISS

GO:0005840 "ribosome" evidence=IEA;ISS

GO:0006412 "translation" evidence=IEA;ISS

GO:0009507 "chloroplast" evidence=ISM

GO:0015934 "large ribosomal subunit" evidence=IEA

GO:0006354 "DNA-dependent transcription, elongation" evidence=RCA

TIGR_CMR|GSU_2847 GSU_2847 "ribosomal protein L14" [Geobacter sulfurreducens PCA (taxid:243231)]

 Score = 261 (96.9 bits), Expect = 1.6e-22, P = 1.6e-22
 Identities = 56/117 (47%), Positives = 73/117 (62%)

Query:    60 IQMRTVLKVVDNSGAKTVMCIQPLKG--RKVARLGDTIVASVKEAMPTGXXXXXXXXXXX 117
             IQM+TVL V DNSGAK + CI+ L G  RK A +GD +V SV+EA+P             
Sbjct:     2 IQMQTVLDVADNSGAKKLFCIKVLGGSKRKYAGVGDIVVCSVREAVPNAKVKKGDVVKVV 61

Query:   118 XXXXXMQHGRFDGSEVRFDDNAVVLVNKAGEPTGTRVFGPVPHELRRKKHVSILTLA 174
                   + GR DGS +RFDDN+ V++N   EP GTR+FGPV  ELR +K + I++LA
Sbjct:    62 IVRTAKEIGRPDGSYIRFDDNSGVVINNQREPVGTRIFGPVARELRAQKFMKIISLA 118

GO:0003735 "structural constituent of ribosome" evidence=ISS

GO:0006412 "translation" evidence=ISS

GO:0042254 "ribosome biogenesis" evidence=ISS

TIGR_CMR|SPO_0495 SPO_0495 "ribosomal protein L14" [Ruegeria pomeroyi DSS-3 (taxid:246200)]

 Score = 252 (93.8 bits), Expect = 1.5e-21, P = 1.5e-21
 Identities = 56/117 (47%), Positives = 70/117 (59%)

Query:    60 IQMRTVLKVVDNSGAKTVMCIQPLKG--RKVARLGDTIVASVKEAMPTGXXXXXXXXXXX 117
             IQM+T L V DNSGA+ V CI+ L G  RK A +GD IV SVKEA+P G           
Sbjct:     2 IQMQTNLDVADNSGARRVQCIKVLGGSKRKYASVGDIIVVSVKEAIPRGRVKKGDVRKAV 61

Query:   118 XXXXXMQHGRFDGSEVRFDDNAVVLVNKAGEPTGTRVFGPVPHELRRKKHVSILTLA 174
                   +  R DG+ +RFD NA V++N   EP GTR+FGPV  ELR K  + I++LA
Sbjct:    62 VVRTAKEVRREDGTAIRFDRNAAVILNNNNEPVGTRIFGPVVRELRAKNFMKIISLA 118

GO:0003735 "structural constituent of ribosome" evidence=ISS

GO:0006412 "translation" evidence=ISS

TIGR_CMR|DET_0484 DET_0484 "ribosomal protein L14" [Dehalococcoides ethenogenes 195 (taxid:243164)]

 Score = 246 (91.7 bits), Expect = 6.3e-21, P = 6.3e-21
 Identities = 54/117 (46%), Positives = 70/117 (59%)

Query:    60 IQMRTVLKVVDNSGAKTVMCIQPLKG-RKV-ARLGDTIVASVKEAMPTGXXXXXXXXXXX 117
             +Q  T L V DN+GAK +MCI  L G RK+ A++GD IVA+VK++ P             
Sbjct:     2 VQQYTRLNVADNTGAKKIMCINVLGGSRKLQAKVGDVIVAAVKKSSPDAQAKSGTVVKAV 61

Query:   118 XXXXXMQHGRFDGSEVRFDDNAVVLVNKAGEPTGTRVFGPVPHELRRKKHVSILTLA 174
                    + R DGS ++FDDNA V++N   EP GTR+FGPV  ELR KK   IL+LA
Sbjct:    62 VVRITKPYARPDGSYIKFDDNAAVILNDKMEPKGTRIFGPVARELRDKKFTKILSLA 118

GO:0003735 "structural constituent of ribosome" evidence=ISS

GO:0006412 "translation" evidence=ISS

GO:0015934 "large ribosomal subunit" evidence=ISS

TIGR_CMR|CPS_0611 CPS_0611 "ribosomal protein L14" [Colwellia psychrerythraea 34H (taxid:167879)]

 Score = 243 (90.6 bits), Expect = 1.3e-20, P = 1.3e-20
 Identities = 54/117 (46%), Positives = 70/117 (59%)

Query:    60 IQMRTVLKVVDNSGAKTVMCIQPLKG--RKVARLGDTIVASVKEAMPTGXXXXXXXXXXX 117
             IQM++ L V DNSGAK V CI+ L G  R+ AR+GD I  +VKEA P G           
Sbjct:     2 IQMQSQLNVADNSGAKRVQCIKVLGGSHRRYARIGDIIKVAVKEASPRGKVKKGDVHTAV 61

Query:   118 XXXXXMQHGRFDGSEVRFDDNAVVLVNKAGEPTGTRVFGPVPHELRRKKHVSILTLA 174
                      R DGS +RFD+NA V++N   +P GTR+FGPV  ELR +K + I++LA
Sbjct:    62 VVRTKKGVRRTDGSAIRFDENAAVMLNANLQPIGTRIFGPVTRELRNEKFMKIVSLA 118

GO:0003735 "structural constituent of ribosome" evidence=ISS

GO:0006412 "translation" evidence=ISS

GO:0015934 "large ribosomal subunit" evidence=ISS

UNIPROTKB|P66069 rplN "50S ribosomal protein L14" [Mycobacterium tuberculosis (taxid:1773)]

 Score = 242 (90.2 bits), Expect = 1.7e-20, P = 1.7e-20
 Identities = 50/117 (42%), Positives = 72/117 (61%)

Query:    60 IQMRTVLKVVDNSGAKTVMCIQPLKG--RKVARLGDTIVASVKEAMPTGXXXXXXXXXXX 117
             IQ  + LKV DN+GAK ++CI+ L G  R+ A +GD IVA+VK+A+P G           
Sbjct:     2 IQQESRLKVADNTGAKEILCIRVLGGSSRRYAGIGDVIVATVKDAIPGGNVKRGDVVKAV 61

Query:   118 XXXXXMQHGRFDGSEVRFDDNAVVLVNKAGEPTGTRVFGPVPHELRRKKHVSILTLA 174
                   +  R DGS ++FD+NA V++    +P GTR+FGPV  ELR K+ + I++LA
Sbjct:    62 VVRTVKERRRPDGSYIKFDENAAVIIKPDNDPRGTRIFGPVGRELREKRFMKIISLA 118

GO:0005886 "plasma membrane" evidence=IDA

GO:0040007 "growth" evidence=IMP

UNIPROTKB|Q9KNZ4 rplN "50S ribosomal protein L14" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)]

 Score = 235 (87.8 bits), Expect = 9.2e-20, P = 9.2e-20
 Identities = 55/118 (46%), Positives = 70/118 (59%)

Query:    60 IQMRTVLKVVDNSGAKTVMCIQPLKG--RKVARLGDTIVASVKEAMPTGXXXXXXXXXXX 117
             IQM+T+L   DNSGA++VMCI+ L G  R+ A +GD I  +VKEA+P G           
Sbjct:     2 IQMQTMLDAADNSGARSVMCIKVLGGSHRRYAHVGDIIKVTVKEAIPRGKVKKGDVLKAV 61

Query:   118 XXXXXMQHGRFDGSEVRFDDNAVVLVNKAGE-PTGTRVFGPVPHELRRKKHVSILTLA 174
                      R DGS +RFD NA VL+N   E P GTR+FGPV  ELR  K + I++LA
Sbjct:    62 VVRTRKGVRRPDGSVIRFDRNACVLLNNNSEQPIGTRIFGPVTRELRNAKFMKIVSLA 119

GO:0003735 "structural constituent of ribosome" evidence=ISS

GO:0006412 "translation" evidence=ISS

TIGR_CMR|VC_2586 VC_2586 "ribosomal protein L14" [Vibrio cholerae O1 biovar El Tor (taxid:686)]

 Score = 235 (87.8 bits), Expect = 9.2e-20, P = 9.2e-20
 Identities = 55/118 (46%), Positives = 70/118 (59%)

Query:    60 IQMRTVLKVVDNSGAKTVMCIQPLKG--RKVARLGDTIVASVKEAMPTGXXXXXXXXXXX 117
             IQM+T+L   DNSGA++VMCI+ L G  R+ A +GD I  +VKEA+P G           
Sbjct:     2 IQMQTMLDAADNSGARSVMCIKVLGGSHRRYAHVGDIIKVTVKEAIPRGKVKKGDVLKAV 61

Query:   118 XXXXXMQHGRFDGSEVRFDDNAVVLVNKAGE-PTGTRVFGPVPHELRRKKHVSILTLA 174
                      R DGS +RFD NA VL+N   E P GTR+FGPV  ELR  K + I++LA
Sbjct:    62 VVRTRKGVRRPDGSVIRFDRNACVLLNNNSEQPIGTRIFGPVTRELRNAKFMKIVSLA 119

GO:0003735 "structural constituent of ribosome" evidence=ISS

GO:0006412 "translation" evidence=ISS

TIGR_CMR|CBU_0248 CBU_0248 "ribosomal protein L14" [Coxiella burnetii RSA 493 (taxid:227377)]

 Score = 232 (86.7 bits), Expect = 1.9e-19, P = 1.9e-19
 Identities = 53/117 (45%), Positives = 70/117 (59%)

Query:    60 IQMRTVLKVVDNSGAKTVMCIQPLKG--RKVARLGDTIVASVKEAMPTGXXXXXXXXXXX 117
             IQ ++++ V DNSGA+ VMCI+ L G  R+ A +GD I  S+KEA+P G           
Sbjct:     2 IQTQSIVDVADNSGARRVMCIKVLGGSKRRYANIGDVIKVSIKEAIPRGKVKKGDVMHAV 61

Query:   118 XXXXXMQHGRFDGSEVRFDDNAVVLVNKAGEPTGTRVFGPVPHELRRKKHVSILTLA 174
                      R DGS +RFD+NAVVL+N   +  GTRVFGPV  ELR  K + I++LA
Sbjct:    62 VVRTRKGVRRNDGSLIRFDNNAVVLLNNQLQLVGTRVFGPVVRELRTDKFMKIISLA 118

GO:0003735 "structural constituent of ribosome" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
B8G6R5	RL14_CHLAD	No assigned EC number	0.5702	0.6685	0.9754	yes	no
B4R8M7	RL14_PHEZH	No assigned EC number	0.5785	0.6685	0.9754	yes	no
A5ELL7	RL14_BRASB	No assigned EC number	0.5785	0.6685	0.9754	yes	no
Q3SSV6	RL14_NITWN	No assigned EC number	0.5785	0.6685	0.9754	yes	no
A4YSK2	RL14_BRASO	No assigned EC number	0.5785	0.6685	0.9754	yes	no
Q1QN20	RL14_NITHX	No assigned EC number	0.5867	0.6685	0.9754	yes	no
Q8UE28	RL14_AGRT5	No assigned EC number	0.5785	0.6685	0.9754	yes	no
B3PWT1	RL14_RHIE6	No assigned EC number	0.5785	0.6685	0.9754	yes	no
Q9A8U3	RL14_CAUCR	No assigned EC number	0.5867	0.6685	0.9754	yes	no
B5ZYU5	RL14_RHILW	No assigned EC number	0.5785	0.6685	0.9754	yes	no
Q4UMR9	RL14_RICFE	No assigned EC number	0.5950	0.6685	0.9754	yes	no
B9M6G8	RL14_GEOSF	No assigned EC number	0.5867	0.6685	0.9754	yes	no
B8H4E4	RL14_CAUCN	No assigned EC number	0.5867	0.6685	0.9754	yes	no
Q98N47	RL14_RHILO	No assigned EC number	0.5867	0.6685	0.9754	yes	no
B6JEU3	RL14_OLICO	No assigned EC number	0.6033	0.6685	0.9754	yes	no
B9JVP7	RL14_AGRVS	No assigned EC number	0.5702	0.6685	0.9754	yes	no
A5VQZ6	RL14_BRUO2	No assigned EC number	0.5702	0.6685	0.9754	yes	no
A9W4T0	RL14_METEP	No assigned EC number	0.5867	0.6685	0.9754	yes	no
A8GVC4	RL14_RICB8	No assigned EC number	0.5867	0.6685	0.9754	yes	no
Q6MJ24	RL14_BDEBA	No assigned EC number	0.5702	0.6685	0.9754	yes	no
Q2K9K6	RL14_RHIEC	No assigned EC number	0.5785	0.6685	0.9754	yes	no
B1LWR6	RL14_METRJ	No assigned EC number	0.5867	0.6685	0.9754	yes	no
A6X0C8	RL14_OCHA4	No assigned EC number	0.5702	0.6685	0.9754	yes	no
A8EZK6	RL14_RICCK	No assigned EC number	0.5950	0.6685	0.9754	yes	no
B8ELF3	RL14_METSB	No assigned EC number	0.5785	0.6685	0.9754	yes	no
Q1RHN1	RL14_RICBR	No assigned EC number	0.5867	0.6685	0.9754	yes	no
Q1MID1	RL14_RHIL3	No assigned EC number	0.5785	0.6685	0.9754	yes	no
A5GAX4	RL14_GEOUR	No assigned EC number	0.5867	0.6685	0.9754	yes	no
B1Z783	RL14_METPB	No assigned EC number	0.5867	0.6685	0.9754	yes	no
C0RJJ1	RL14_BRUMB	No assigned EC number	0.5702	0.6685	0.9754	yes	no
B2S669	RL14_BRUA1	No assigned EC number	0.5702	0.6685	0.9754	yes	no
Q11HR2	RL14_MESSB	No assigned EC number	0.5950	0.6685	0.9754	yes	no
Q2YRA5	RL14_BRUA2	No assigned EC number	0.5702	0.6685	0.9754	yes	no
Q8G083	RL14_BRUSU	No assigned EC number	0.5702	0.6685	0.9754	yes	no
A1ALV1	RL14_PELPD	No assigned EC number	0.5785	0.6685	0.9754	yes	no
Q9ZCR5	RL14_RICPR	No assigned EC number	0.5785	0.6685	0.9754	yes	no
B9JDT8	RL14_AGRRK	No assigned EC number	0.5785	0.6685	0.9754	yes	no
Q89J94	RL14_BRAJA	No assigned EC number	0.5785	0.6685	0.9754	yes	no
Q92QG0	RL14_RHIME	No assigned EC number	0.5785	0.6685	0.9754	yes	no
C3MAZ0	RL14_RHISN	No assigned EC number	0.5785	0.6685	0.9754	yes	no
Q211F8	RL14_RHOPB	No assigned EC number	0.5785	0.6685	0.9754	yes	no
B0T2D2	RL14_CAUSK	No assigned EC number	0.5867	0.6685	0.9754	yes	no
Q8YHN0	RL14_BRUME	No assigned EC number	0.5702	0.6685	0.9754	yes	no
B0CH22	RL14_BRUSI	No assigned EC number	0.5702	0.6685	0.9754	yes	no
A6U869	RL14_SINMW	No assigned EC number	0.5785	0.6685	0.9754	yes	no
Q68W88	RL14_RICTY	No assigned EC number	0.5785	0.6685	0.9754	yes	no
B2IK72	RL14_BEII9	No assigned EC number	0.5950	0.6685	0.9754	yes	no
Q39XZ6	RL14_GEOMG	No assigned EC number	0.5619	0.6685	0.9754	yes	no
Q57CR8	RL14_BRUAB	No assigned EC number	0.5702	0.6685	0.9754	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	178
PRK05483	122	PRK05483, rplN, 50S ribosomal protein L14; Validat	2e-57
pfam00238	122	pfam00238, Ribosomal_L14, Ribosomal protein L14p/L	4e-57
COG0093	122	COG0093, RplN, Ribosomal protein L14 [Translation,	3e-51
TIGR01067	122	TIGR01067, rplN_bact, ribosomal protein L14, bacte	1e-48
CHL00057	122	CHL00057, rpl14, ribosomal protein L14	7e-46
PRK08571	132	PRK08571, rpl14p, 50S ribosomal protein L14P; Revi	2e-23
TIGR03673	131	TIGR03673, rpl14p_arch, 50S ribosomal protein L14P	1e-22
PTZ00054	139	PTZ00054, PTZ00054, 60S ribosomal protein L23; Pro	1e-12

>gnl|CDD|180117 PRK05483, rplN, 50S ribosomal protein L14; Validated

 Score =  175 bits (447), Expect = 2e-57
 Identities = 73/117 (62%), Positives = 83/117 (70%), Gaps = 2/117 (1%)

Query: 60  IQMRTVLKVVDNSGAKTVMCIQPLKG--RKVARLGDTIVASVKEAMPTGKVKKGQVVHAV 117
           IQ  T L V DNSGAK VMCI+ L G  R+ A +GD IV SVKEA+P GKVKKG VV AV
Sbjct: 2   IQQETRLNVADNSGAKEVMCIKVLGGSKRRYASIGDVIVVSVKEAIPRGKVKKGDVVKAV 61

Query: 118 VVRAAMQHGRFDGSEVRFDDNAVVLVNKAGEPTGTRVFGPVPHELRRKKHVSILTLA 174
           VVR      R DGS +RFDDNA VL+N  GEP GTR+FGPV  ELR KK + I++LA
Sbjct: 62  VVRTKKGVRRPDGSYIRFDDNAAVLLNNDGEPRGTRIFGPVARELRDKKFMKIVSLA 118

Length = 122

>gnl|CDD|201105 pfam00238, Ribosomal_L14, Ribosomal protein L14p/L23e

 Score =  174 bits (445), Expect = 4e-57
 Identities = 72/117 (61%), Positives = 85/117 (72%), Gaps = 2/117 (1%)

Query: 60  IQMRTVLKVVDNSGAKTVMCIQPLKG--RKVARLGDTIVASVKEAMPTGKVKKGQVVHAV 117
           IQ+ T L V DNSGAK V CI+ L G  +K A++GD IV SVK+A+P GKVKKG VV AV
Sbjct: 2   IQVGTRLNVADNSGAKKVKCIKVLGGSRKKYAKVGDIIVVSVKKAIPKGKVKKGDVVKAV 61

Query: 118 VVRAAMQHGRFDGSEVRFDDNAVVLVNKAGEPTGTRVFGPVPHELRRKKHVSILTLA 174
           +VR   +  R DGS +RFDDNAVVL+N  GEP GTR+FGPV  ELR KK   IL+LA
Sbjct: 62  IVRTKKEVRRKDGSYIRFDDNAVVLINNKGEPKGTRIFGPVARELRAKKFPKILSLA 118

Length = 122

>gnl|CDD|223171 COG0093, RplN, Ribosomal protein L14 [Translation, ribosomal structure and biogenesis]

 Score =  160 bits (406), Expect = 3e-51
 Identities = 67/117 (57%), Positives = 83/117 (70%), Gaps = 2/117 (1%)

Query: 60  IQMRTVLKVVDNSGAKTVMCIQPLKG--RKVARLGDTIVASVKEAMPTGKVKKGQVVHAV 117
           IQ++T L V DNSGAK VMCI+ L G  R+ A +GD IV SVK+A+P G VKKG VV AV
Sbjct: 2   IQVQTRLNVADNSGAKEVMCIKVLGGSRRRYAGVGDIIVVSVKKAIPRGMVKKGDVVKAV 61

Query: 118 VVRAAMQHGRFDGSEVRFDDNAVVLVNKAGEPTGTRVFGPVPHELRRKKHVSILTLA 174
           VVR   +  R DGS ++FDDNA V++N  GEP GTR+FGPV  ELR +  + I +LA
Sbjct: 62  VVRTKKEVRRPDGSYIKFDDNAAVIINPDGEPRGTRIFGPVARELRERGFMKIASLA 118

Length = 122

>gnl|CDD|130139 TIGR01067, rplN_bact, ribosomal protein L14, bacterial/organelle

 Score =  153 bits (389), Expect = 1e-48
 Identities = 67/118 (56%), Positives = 81/118 (68%), Gaps = 2/118 (1%)

Query: 60  IQMRTVLKVVDNSGAKTVMCIQPLKG--RKVARLGDTIVASVKEAMPTGKVKKGQVVHAV 117
           IQ ++ L V DNSGAK V CI+ L G  R+ A +GD IV  VK+A+P GKVKKG VV AV
Sbjct: 2   IQQQSRLNVADNSGAKKVQCIKVLGGSRRRYATVGDVIVVVVKDAIPNGKVKKGDVVKAV 61

Query: 118 VVRAAMQHGRFDGSEVRFDDNAVVLVNKAGEPTGTRVFGPVPHELRRKKHVSILTLAE 175
           +VR      R DGS +RFDDNA VL+NK  EP GTR+FGPV  ELR K  + I++LA 
Sbjct: 62  IVRTKKGVRRKDGSYIRFDDNACVLINKNKEPRGTRIFGPVARELRDKGFMKIVSLAP 119

This model distinguishes bacterial and most organellar examples of ribosomal protein L14 from all archaeal and eukaryotic forms [Protein synthesis, Ribosomal proteins: synthesis and modification]. Length = 122

>gnl|CDD|176997 CHL00057, rpl14, ribosomal protein L14

 Score =  146 bits (371), Expect = 7e-46
 Identities = 58/117 (49%), Positives = 79/117 (67%), Gaps = 2/117 (1%)

Query: 60  IQMRTVLKVVDNSGAKTVMCIQPLKG--RKVARLGDTIVASVKEAMPTGKVKKGQVVHAV 117
           IQ +T L V DNSGA+ +MCI+ L    RK A +GD I+A VKEA+P   +K+ +VV AV
Sbjct: 2   IQPQTYLNVADNSGARKLMCIRVLGASNRKYAHIGDVIIAVVKEAVPNMPLKRSEVVRAV 61

Query: 118 VVRAAMQHGRFDGSEVRFDDNAVVLVNKAGEPTGTRVFGPVPHELRRKKHVSILTLA 174
           +VR   +  R +G  +RFDDNA V++++ G P GTRVFGP+  ELR K    I++LA
Sbjct: 62  IVRTCKELKRDNGMIIRFDDNAAVVIDQEGNPKGTRVFGPIARELREKNFTKIVSLA 118

Length = 122

>gnl|CDD|181478 PRK08571, rpl14p, 50S ribosomal protein L14P; Reviewed

 Score = 89.6 bits (223), Expect = 2e-23
 Identities = 45/108 (41%), Positives = 62/108 (57%), Gaps = 9/108 (8%)

Query: 60  IQMRTVLKVVDNSGAKTVMCIQ--PLKGRK----VARLGDTIVASVKEAMPTGKVKKGQV 113
           + +   L   DN+GAK V  I     KG K     A +GD +V SVK+  P  +++K QV
Sbjct: 12  LPVGARLVCADNTGAKEVEIISVKGYKGVKRRLPKAGVGDMVVVSVKKGTP--EMRK-QV 68

Query: 114 VHAVVVRAAMQHGRFDGSEVRFDDNAVVLVNKAGEPTGTRVFGPVPHE 161
           + AVVVR   ++ R DG+ V+F+DNA V+V   G P GT + GPV  E
Sbjct: 69  LRAVVVRQRKEYRRPDGTRVKFEDNAAVIVTPEGTPKGTEIKGPVARE 116

Length = 132

>gnl|CDD|132712 TIGR03673, rpl14p_arch, 50S ribosomal protein L14P

 Score = 87.4 bits (217), Expect = 1e-22
 Identities = 46/108 (42%), Positives = 62/108 (57%), Gaps = 9/108 (8%)

Query: 60  IQMRTVLKVVDNSGAKTVMCI--QPLKGRK----VARLGDTIVASVKEAMPTGKVKKGQV 113
           + +  +L   DN+GAK V  I  +  KG K     A +GD +V SVK+  P     + QV
Sbjct: 11  LPVGALLVCADNTGAKEVEVISVKGYKGVKRRLPCAGVGDMVVVSVKKGTPE---MRKQV 67

Query: 114 VHAVVVRAAMQHGRFDGSEVRFDDNAVVLVNKAGEPTGTRVFGPVPHE 161
             AVVVR   ++ R DG+ V+F+DNAVV+V   GEP GT + GPV  E
Sbjct: 68  FKAVVVRQRKEYRRPDGTRVKFEDNAVVIVTPDGEPKGTEIKGPVARE 115

Part of the 50S ribosomal subunit. Forms a cluster with proteins L3 and L24e, part of which may contact the 16S rRNA in 2 intersubunit bridges. Length = 131

>gnl|CDD|185418 PTZ00054, PTZ00054, 60S ribosomal protein L23; Provisional

 Score = 61.7 bits (150), Expect = 1e-12
 Identities = 39/103 (37%), Positives = 59/103 (57%), Gaps = 9/103 (8%)

Query: 65  VLKVVDNSGAKT--VMCIQPLKGR----KVARLGDTIVASVKEAMPTGKVKKGQVVHAVV 118
           V+   DNSGAK   ++ ++ + GR      A LGD ++A+VK+  P  + K   V++AV+
Sbjct: 24  VVNCADNSGAKNLYIIAVKGIHGRLNRLPSASLGDMVLATVKKGKPELRKK---VLNAVI 80

Query: 119 VRAAMQHGRFDGSEVRFDDNAVVLVNKAGEPTGTRVFGPVPHE 161
           +R      R DG  + F+DNA V+VN  GE  G+ + GPV  E
Sbjct: 81  IRQRKAWRRKDGVFIYFEDNAGVIVNPKGEMKGSAITGPVAKE 123

Length = 139

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	178
COG0093	122	RplN Ribosomal protein L14 [Translation, ribosomal	100.0
CHL00057	122	rpl14 ribosomal protein L14	100.0
PRK05483	122	rplN 50S ribosomal protein L14; Validated	100.0
TIGR01067	122	rplN_bact ribosomal protein L14, bacterial/organel	100.0
PTZ00054	139	60S ribosomal protein L23; Provisional	100.0
PF00238	122	Ribosomal_L14: Ribosomal protein L14p/L23e; InterP	100.0
TIGR03673	131	rpl14p_arch 50S ribosomal protein L14P. Part of th	100.0
PRK08571	132	rpl14p 50S ribosomal protein L14P; Reviewed	100.0
PTZ00320	188	ribosomal protein L14; Provisional	100.0
KOG0901	145	consensus 60S ribosomal protein L14/L17/L23 [Trans	100.0
KOG3441	149	consensus Mitochondrial ribosomal protein L14 [Tra	99.88

>COG0093 RplN Ribosomal protein L14 [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=1.7e-52  Score=325.29  Aligned_cols=120  Identities=56%  Similarity=0.863  Sum_probs=117.1

Q ss_pred             eeeccceEEEeeCcCcceEEEEEeeCC--ccccccCcEEEEEEeeecCCCcccccceEEEEEEEEeeeecCCCCceEEec
Q 030370           59 FIQMRTVLKVVDNSGAKTVMCIQPLKG--RKVARLGDTIVASVKEAMPTGKVKKGQVVHAVVVRAAMQHGRFDGSEVRFD  136 (178)
Q Consensus        59 mIq~~T~L~VaDNSGAK~v~cI~vl~~--~k~a~vGD~I~vSVKk~~p~~kvKKg~V~kAVIVRtKk~~~R~dG~~ikFd  136 (178)
                      |||.+|+|+||||||||+++||+++++  +++|.+||+|++|||++.|...+||||+++|||||||++++|+||++++||
T Consensus         1 miq~~t~l~vADNSGAk~v~~I~V~gg~~r~~A~vGD~ivvsVKka~P~~~vKkg~V~~AViVRtkk~~rR~DGs~i~Fd   80 (122)
T COG0093           1 MIQVQTRLNVADNSGAKEVMCIKVLGGSRRRYAGVGDIIVVSVKKAIPRGMVKKGDVVKAVVVRTKKEVRRPDGSYIKFD   80 (122)
T ss_pred             CcccccEEEEccCCCCcEEEEEEEeccccccccCCCCEEEEEEeeccCCcceeccceEEEEEEEeCCceEcCCCCEEEeC
Confidence            899999999999999999999999986  569999999999999999999999999999999999999999999999999


Q ss_pred             CceEEEEcCCCCceeeEEecchhHhhhcCCcchhhhcccccC
Q 030370          137 DNAVVLVNKAGEPTGTRVFGPVPHELRRKKHVSILTLAEHLA  178 (178)
Q Consensus       137 dNavVLln~k~~PlGTRI~GPV~~Elr~kk~~KI~SLA~~i~  178 (178)
                      |||+||+|++++|+||||||||++|||+++|+||+|||++++
T Consensus        81 dNA~Viin~~g~P~GtrI~GPVaRElr~~~~~kI~SlA~eVv  122 (122)
T COG0093          81 DNAAVIINPDGEPRGTRIFGPVARELRERGFMKIASLAPEVV  122 (122)
T ss_pred             CceEEEECCCCCcccceEecchhHHHHhcCCceeeecceecC
Confidence            999999999999999999999999999999999999999875

>CHL00057 rpl14 ribosomal protein L14

Probab=100.00  E-value=4.3e-51  Score=319.07  Aligned_cols=120  Identities=48%  Similarity=0.787  Sum_probs=116.8

Q ss_pred             eeeccceEEEeeCcCcceEEEEEeeCC--ccccccCcEEEEEEeeecCCCcccccceEEEEEEEEeeeecCCCCceEEec
Q 030370           59 FIQMRTVLKVVDNSGAKTVMCIQPLKG--RKVARLGDTIVASVKEAMPTGKVKKGQVVHAVVVRAAMQHGRFDGSEVRFD  136 (178)
Q Consensus        59 mIq~~T~L~VaDNSGAK~v~cI~vl~~--~k~a~vGD~I~vSVKk~~p~~kvKKg~V~kAVIVRtKk~~~R~dG~~ikFd  136 (178)
                      |||.+|+|+|+|||||+.++||+++++  +++|++||+|+||||+++|+++++|||+++|||||||++++|+||++++||
T Consensus         1 MIq~~t~l~v~DNSGak~v~cI~v~~~~~~~~a~vGD~IvvsVk~~~~~~k~kkg~v~kAvIVrtk~~~~r~dG~~i~F~   80 (122)
T CHL00057          1 MIQPQTYLNVADNSGARKLMCIRVLGASNRKYAHIGDVIIAVVKEAVPNMPLKRSEVVRAVIVRTCKELKRDNGMIIRFD   80 (122)
T ss_pred             CCCcCCEEEEeECCCCcEEEEEEEeCCCCCccccCCCEEEEEEEeccCCCceecCCEEEEEEEEeccccCcCCCcEEEcC
Confidence            899999999999999999999999975  578999999999999999999999999999999999999999999999999


Q ss_pred             CceEEEEcCCCCceeeEEecchhHhhhcCCcchhhhcccccC
Q 030370          137 DNAVVLVNKAGEPTGTRVFGPVPHELRRKKHVSILTLAEHLA  178 (178)
Q Consensus       137 dNavVLln~k~~PlGTRI~GPV~~Elr~kk~~KI~SLA~~i~  178 (178)
                      |||+||+|++++|+||||+||||+|||+++|+||+|||++++
T Consensus        81 ~Na~VLin~~~~p~GTrI~Gpv~~elr~k~~~Ki~sla~~vi  122 (122)
T CHL00057         81 DNAAVVIDQEGNPKGTRVFGPIARELREKNFTKIVSLAPEVL  122 (122)
T ss_pred             CceEEEECCCCCEeEeEEEccchHHHhhcCCeEEEecccccC
Confidence            999999999999999999999999999999999999999875

>PRK05483 rplN 50S ribosomal protein L14; Validated

Probab=100.00  E-value=6.1e-51  Score=318.14  Aligned_cols=120  Identities=61%  Similarity=0.897  Sum_probs=116.6

Q ss_pred             eeeccceEEEeeCcCcceEEEEEeeCC--ccccccCcEEEEEEeeecCCCcccccceEEEEEEEEeeeecCCCCceEEec
Q 030370           59 FIQMRTVLKVVDNSGAKTVMCIQPLKG--RKVARLGDTIVASVKEAMPTGKVKKGQVVHAVVVRAAMQHGRFDGSEVRFD  136 (178)
Q Consensus        59 mIq~~T~L~VaDNSGAK~v~cI~vl~~--~k~a~vGD~I~vSVKk~~p~~kvKKg~V~kAVIVRtKk~~~R~dG~~ikFd  136 (178)
                      |||.+|+|+|+|||||+.++||+++++  +++|++||+|+||||++.|+++++|||+++|||||||++++|+||++++||
T Consensus         1 MIq~~t~l~v~DNSGak~v~cI~v~g~~~~~~a~iGD~I~vsVkk~~~~~~~kkg~v~~AvIVrtkk~~~r~dG~~i~F~   80 (122)
T PRK05483          1 MIQQETRLNVADNSGAKEVMCIKVLGGSKRRYASIGDVIVVSVKEAIPRGKVKKGDVVKAVVVRTKKGVRRPDGSYIRFD   80 (122)
T ss_pred             CCCCCCEEEEeECCCCCEEEEEEEeCCCCCCccccCCEEEEEEEEcCCCCcccCCCEeeEEEEEeccceecCCCCEEEcC
Confidence            899999999999999999999999975  568999999999999999999999999999999999999999999999999


Q ss_pred             CceEEEEcCCCCceeeEEecchhHhhhcCCcchhhhcccccC
Q 030370          137 DNAVVLVNKAGEPTGTRVFGPVPHELRRKKHVSILTLAEHLA  178 (178)
Q Consensus       137 dNavVLln~k~~PlGTRI~GPV~~Elr~kk~~KI~SLA~~i~  178 (178)
                      |||+||+|++++|+||||+||||+|||+++|+||+|||++++
T Consensus        81 dNavVLin~~~~p~GTrI~Gpv~~elr~~~~~Ki~sla~~v~  122 (122)
T PRK05483         81 DNAAVLLNNDGEPRGTRIFGPVARELRDKKFMKIVSLAPEVL  122 (122)
T ss_pred             CCEEEEECCCCCEeEeEEeccchHHHhhcCCcEEEecccccC
Confidence            999999999999999999999999999999999999999875

>TIGR01067 rplN_bact ribosomal protein L14, bacterial/organelle

Probab=100.00  E-value=8.4e-51  Score=317.23  Aligned_cols=120  Identities=56%  Similarity=0.849  Sum_probs=116.7

Q ss_pred             eeeccceEEEeeCcCcceEEEEEeeCC--ccccccCcEEEEEEeeecCCCcccccceEEEEEEEEeeeecCCCCceEEec
Q 030370           59 FIQMRTVLKVVDNSGAKTVMCIQPLKG--RKVARLGDTIVASVKEAMPTGKVKKGQVVHAVVVRAAMQHGRFDGSEVRFD  136 (178)
Q Consensus        59 mIq~~T~L~VaDNSGAK~v~cI~vl~~--~k~a~vGD~I~vSVKk~~p~~kvKKg~V~kAVIVRtKk~~~R~dG~~ikFd  136 (178)
                      |||.+|+|+|+|||||++++||+++++  +++|++||+|+||||+++|+++++|||+++|||||||++++|+||++++||
T Consensus         1 MIq~~t~l~v~DNSGak~v~cI~v~~~~~~~~a~iGD~I~vsVk~~~~~~~~kkg~v~~AvIVrtkk~~~r~dG~~i~F~   80 (122)
T TIGR01067         1 MIQQQSRLNVADNSGAKKVQCIKVLGGSRRRYATVGDVIVVVVKDAIPNGKVKKGDVVKAVIVRTKKGVRRKDGSYIRFD   80 (122)
T ss_pred             CCCcCCEEEEeECCCCcEEEEEEEeCCCCCCccccCCEEEEEEEEcCCCCccccccEEEEEEEEeecceEeCCCCEEECC
Confidence            899999999999999999999999975  568999999999999999999999999999999999999999999999999


Q ss_pred             CceEEEEcCCCCceeeEEecchhHhhhcCCcchhhhcccccC
Q 030370          137 DNAVVLVNKAGEPTGTRVFGPVPHELRRKKHVSILTLAEHLA  178 (178)
Q Consensus       137 dNavVLln~k~~PlGTRI~GPV~~Elr~kk~~KI~SLA~~i~  178 (178)
                      |||+||+|++++|+||||+||||+|||+++|+||+|||++++
T Consensus        81 ~Na~VLin~~~~p~GTrI~Gpv~~elr~~~~~Ki~sla~~i~  122 (122)
T TIGR01067        81 DNACVLINKNKEPRGTRIFGPVARELRDKGFMKIVSLAPEVI  122 (122)
T ss_pred             CceEEEECCCCCEeeeEEEccchHHHhhcCCceeeeccchhC
Confidence            999999999999999999999999999999999999999875

This model distinguishes bacterial and most organellar examples of ribosomal protein L14 from all archaeal and eukaryotic forms.

>PTZ00054 60S ribosomal protein L23; Provisional

Probab=100.00  E-value=1e-48  Score=311.69  Aligned_cols=116  Identities=34%  Similarity=0.462  Sum_probs=110.2

Q ss_pred             eeeccceEEEeeCcCcceEEEEEeeC---C-c--cccccCcEEEEEEeeecCCCcccccceEEEEEEEEeeeecCCCCce
Q 030370           59 FIQMRTVLKVVDNSGAKTVMCIQPLK---G-R--KVARLGDTIVASVKEAMPTGKVKKGQVVHAVVVRAAMQHGRFDGSE  132 (178)
Q Consensus        59 mIq~~T~L~VaDNSGAK~v~cI~vl~---~-~--k~a~vGD~I~vSVKk~~p~~kvKKg~V~kAVIVRtKk~~~R~dG~~  132 (178)
                      |||.+|+|+|+||||||+++||++++   + +  ++|++||+|+||||++.|   ++|||+++|||||||++++|+||++
T Consensus        18 mIq~~t~L~vaDNSGAk~v~cI~vlg~~g~~~r~~~a~iGD~IvvsVKk~~p---~~kg~V~kAVIVRtKk~~rR~dGs~   94 (139)
T PTZ00054         18 GLPVGAVVNCADNSGAKNLYIIAVKGIHGRLNRLPSASLGDMVLATVKKGKP---ELRKKVLNAVIIRQRKAWRRKDGVF   94 (139)
T ss_pred             eecCCCEEEEeeCCCccEEEEEEEeccCcCCccCcccccCCEEEEEEEECCC---cccCCEeeEEEEEECcceEcCCCcE
Confidence            99999999999999999999999996   3 3  479999999999999999   5789999999999999999999999


Q ss_pred             EEecCceEEEEcCCCCceeeEEecchhHhhhcCCcchhhhcccccC
Q 030370          133 VRFDDNAVVLVNKAGEPTGTRVFGPVPHELRRKKHVSILTLAEHLA  178 (178)
Q Consensus       133 ikFddNavVLln~k~~PlGTRI~GPV~~Elr~kk~~KI~SLA~~i~  178 (178)
                      ++|||||+||+|++++|+||||+||||+|| +++|+||+|||++++
T Consensus        95 i~F~dNA~VLin~~~~p~GTRI~GpV~rEl-~~~~~KI~SLA~~vi  139 (139)
T PTZ00054         95 IYFEDNAGVIVNPKGEMKGSAITGPVAKEC-ADLWPKISSAAPAIV  139 (139)
T ss_pred             EEeCCcEEEEECCCCCEeeeEEeCchhHHH-HhCccHhhccccccC
Confidence            999999999999999999999999999999 557999999999885

>PF00238 Ribosomal_L14: Ribosomal protein L14p/L23e; InterPro: IPR000218 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=100.00  E-value=4.1e-49  Score=307.01  Aligned_cols=120  Identities=60%  Similarity=0.879  Sum_probs=114.0

Q ss_pred             eeeccceEEEeeCcCcceEEEEEeeCC--ccccccCcEEEEEEeeecCCCcccccceEEEEEEEEeeeecCCCCceEEec
Q 030370           59 FIQMRTVLKVVDNSGAKTVMCIQPLKG--RKVARLGDTIVASVKEAMPTGKVKKGQVVHAVVVRAAMQHGRFDGSEVRFD  136 (178)
Q Consensus        59 mIq~~T~L~VaDNSGAK~v~cI~vl~~--~k~a~vGD~I~vSVKk~~p~~kvKKg~V~kAVIVRtKk~~~R~dG~~ikFd  136 (178)
                      |||.+|+|+|+|||||++++||+++++  +++|++||+|++|||+.+|+.++||||+++|+|||||++++|.||++++||
T Consensus         1 MIq~~t~L~v~DNSGak~v~cI~v~~~~~~~~a~vGD~I~vsVkk~~~~~~vkkg~v~~avIVrtk~~~~r~dg~~i~F~   80 (122)
T PF00238_consen    1 MIQKGTILKVADNSGAKKVKCIKVLGGKRRKYASVGDIIVVSVKKGRPKSKVKKGQVYKAVIVRTKKPIRRKDGSFIKFD   80 (122)
T ss_dssp             -BETTEEEEESBSSSEEEEEEEEETSSTTTSEE-TTSEEEEEEEEE-SSSSSTTTEEEEEEEEECSSEEETTTSEEEEES
T ss_pred             CCCCCCEEEEeeCCCCcEEEEEEEeCCcCccccccceEEEEEEeecccCccccccceEEEEEEEEeEEEEEeCCcEEEeC
Confidence            999999999999999999999999975  678999999999999999999999999999999999999999999999999


Q ss_pred             CceEEEEcCCCCceeeEEecchhHhhhcCCcchhhhcccccC
Q 030370          137 DNAVVLVNKAGEPTGTRVFGPVPHELRRKKHVSILTLAEHLA  178 (178)
Q Consensus       137 dNavVLln~k~~PlGTRI~GPV~~Elr~kk~~KI~SLA~~i~  178 (178)
                      |||+||+|++++|+||||+||||+|+|+++|+||+|||+.|+
T Consensus        81 ~Na~VLln~~~~p~GtrI~Gpv~~elr~~~~~ki~sla~~iv  122 (122)
T PF00238_consen   81 DNAVVLLNKKGNPLGTRIFGPVPRELRKKKFPKILSLASRIV  122 (122)
T ss_dssp             SEEEEEEETTSSBSSSSBCSEEEHHHHHTTSHHHHHHSSCEE
T ss_pred             CccEEEEcCCCCEeeeEEEeeehHHhhHcCCchHHhhccccC
Confidence            999999999999999999999999999999999999999875

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Ribosomal protein L14 is one of the proteins from the large ribosomal subunit. In eubacteria, L14 is known to bind directly to the 23S rRNA. It belongs to a family of ribosomal proteins, which have been grouped on the basis of sequence similarities []. Based on amino-acid sequence homology, it is predicted that ribosomal protein L14 is a member of a recently identified family of structurally related RNA-binding proteins []. L14 is a protein of 119 to 137 amino-acid residues.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005840 ribosome; PDB: 3IZR_M 4A1C_J 4A1E_J 4A1A_J 4A17_J 1VSP_I 3D5D_O 1VSA_I 3MRZ_K 3F1F_O ....

>TIGR03673 rpl14p_arch 50S ribosomal protein L14P

Probab=100.00  E-value=1.2e-48  Score=308.57  Aligned_cols=116  Identities=40%  Similarity=0.574  Sum_probs=109.7

Q ss_pred             eeeccceEEEeeCcCcceEEEEEeeC---C--c-cccccCcEEEEEEeeecCCCcccccceEEEEEEEEeeeecCCCCce
Q 030370           59 FIQMRTVLKVVDNSGAKTVMCIQPLK---G--R-KVARLGDTIVASVKEAMPTGKVKKGQVVHAVVVRAAMQHGRFDGSE  132 (178)
Q Consensus        59 mIq~~T~L~VaDNSGAK~v~cI~vl~---~--~-k~a~vGD~I~vSVKk~~p~~kvKKg~V~kAVIVRtKk~~~R~dG~~  132 (178)
                      |||.+|+|+|+|||||++++||++++   +  + ++|++||+|+||||++.|   ++|||+++|||||||++++|+||++
T Consensus        10 mIq~~t~L~VaDNSGak~v~cI~vl~~~g~~~r~~~a~iGD~IvvsVK~~~p---~~kg~v~kAVIVRtkk~~~R~dGs~   86 (131)
T TIGR03673        10 ALPVGSLLVCADNTGAKEVEVISVKGYKGVKRRLPCAGVGDMVVVSVKKGTP---EMRKQVFKAVVVRQRKEYRRPDGTR   86 (131)
T ss_pred             eeccCCEEEEeeCCCCceEEEEEEeeeCCCcccCCccccCCEEEEEEEECCc---cccCCEeEEEEEEeCcceecCCCcE
Confidence            99999999999999999999999983   2  3 569999999999999999   5789999999999999999999999


Q ss_pred             EEecCceEEEEcCCCCceeeEEecchhHhhhcCCcchhhhcccccC
Q 030370          133 VRFDDNAVVLVNKAGEPTGTRVFGPVPHELRRKKHVSILTLAEHLA  178 (178)
Q Consensus       133 ikFddNavVLln~k~~PlGTRI~GPV~~Elr~kk~~KI~SLA~~i~  178 (178)
                      ++|||||+||+|++++|+||||+||||+|| +++|+||+|||++++
T Consensus        87 i~FddNa~VLin~~~~P~GTRI~GpV~rEl-~~~~~Ki~SlA~~vi  131 (131)
T TIGR03673        87 VKFEDNAVVIVTPDGEPKGTEIKGPVAREA-AERWPKIASIASIIV  131 (131)
T ss_pred             EEeCCcEEEEECCCCCEeeeEEEccchHHH-HhCccHheeccchhC
Confidence            999999999999999999999999999999 568999999999875

Part of the 50S ribosomal subunit. Forms a cluster with proteins L3 and L24e, part of which may contact the 16S rRNA in 2 intersubunit bridges.

>PRK08571 rpl14p 50S ribosomal protein L14P; Reviewed

Probab=100.00  E-value=2.7e-48  Score=306.99  Aligned_cols=116  Identities=38%  Similarity=0.530  Sum_probs=109.7

Q ss_pred             eeeccceEEEeeCcCcceEEEEEeeC---C-c--cccccCcEEEEEEeeecCCCcccccceEEEEEEEEeeeecCCCCce
Q 030370           59 FIQMRTVLKVVDNSGAKTVMCIQPLK---G-R--KVARLGDTIVASVKEAMPTGKVKKGQVVHAVVVRAAMQHGRFDGSE  132 (178)
Q Consensus        59 mIq~~T~L~VaDNSGAK~v~cI~vl~---~-~--k~a~vGD~I~vSVKk~~p~~kvKKg~V~kAVIVRtKk~~~R~dG~~  132 (178)
                      |||.+|+|+|+||||||+++||++++   + +  ++|++||+|+||||++.|   ++|||+++|||||||++++|+||++
T Consensus        11 mIq~~T~L~VaDNSGAk~v~cI~vlg~~g~~~r~~~a~iGD~IvvsVK~~~p---~~kg~v~kAVIVRtkk~~~R~dGs~   87 (132)
T PRK08571         11 GLPVGARLVCADNTGAKEVEIISVKGYKGVKRRLPKAGVGDMVVVSVKKGTP---EMRKQVLRAVVVRQRKEYRRPDGTR   87 (132)
T ss_pred             eecCCCEEEEeeCCCCCeEEEEEEeccCCCCccCCccccCCEEEEEEEECCC---cccCCEeEEEEEEeccceEcCCCcE
Confidence            99999999999999999999999985   2 2  469999999999999999   5689999999999999999999999


Q ss_pred             EEecCceEEEEcCCCCceeeEEecchhHhhhcCCcchhhhcccccC
Q 030370          133 VRFDDNAVVLVNKAGEPTGTRVFGPVPHELRRKKHVSILTLAEHLA  178 (178)
Q Consensus       133 ikFddNavVLln~k~~PlGTRI~GPV~~Elr~kk~~KI~SLA~~i~  178 (178)
                      ++|||||+||+|++++|+||||+||||+|| +++|+||+|||++++
T Consensus        88 i~F~dNa~VLin~~~~p~GTRI~GpV~~El-~~~~~Ki~sLA~~vi  132 (132)
T PRK08571         88 VKFEDNAAVIVTPEGTPKGTEIKGPVAREA-AERWPKIASIASIIV  132 (132)
T ss_pred             EEeCCcEEEEECCCCCEeeeEEeccchHHH-hhCCchheeccchhC
Confidence            999999999999999999999999999999 557999999999875

>PTZ00320 ribosomal protein L14; Provisional

Probab=100.00  E-value=2.3e-47  Score=314.49  Aligned_cols=118  Identities=25%  Similarity=0.330  Sum_probs=114.2

Q ss_pred             eccceEEEeeCcCcceEEEEEeeCCccccccCcE----EEEEEeeecC------CCcccccceEEEEEEEEeeeecCCCC
Q 030370           61 QMRTVLKVVDNSGAKTVMCIQPLKGRKVARLGDT----IVASVKEAMP------TGKVKKGQVVHAVVVRAAMQHGRFDG  130 (178)
Q Consensus        61 q~~T~L~VaDNSGAK~v~cI~vl~~~k~a~vGD~----I~vSVKk~~p------~~kvKKg~V~kAVIVRtKk~~~R~dG  130 (178)
                      .-+|+|+|+||||||+++||+++.++++|++||+    |+||||++.|      ++++|||||++|||||||++++|+||
T Consensus        61 ~~qT~L~VaDNSGAK~V~CIkVl~~rr~A~IGDi~~~~IvVsVKka~P~~~~~~~~kVKKG~V~kAVIVRTKK~irR~DG  140 (188)
T PTZ00320         61 SDQVKLHCVDNTNCKHVRLISKATAERFAHCRVFPAVAHRVSVQRFKSGRGEVSRHRVKPGNIYWVCLLSRRQTNTRMSG  140 (188)
T ss_pred             CCCcEEEEEeCCCCcEEEEEEEecCCCceeeccccCceEEEEEeecccCccccccCceecCCEEEEEEEEECcccCCCCC
Confidence            4589999999999999999999977899999999    9999999999      78999999999999999999999999


Q ss_pred             ceEEecCceEEEEcCCCCceeeEEecchhHhhhcCCcchhhhcccccC
Q 030370          131 SEVRFDDNAVVLVNKAGEPTGTRVFGPVPHELRRKKHVSILTLAEHLA  178 (178)
Q Consensus       131 ~~ikFddNavVLln~k~~PlGTRI~GPV~~Elr~kk~~KI~SLA~~i~  178 (178)
                      ++++|||||+||+|++++|+||||||||++|||+++|+||+|||+.++
T Consensus       141 s~IrFDdNAaVLIN~qgePlGTRIfGPVaRELR~k~f~KIvSLAp~~~  188 (188)
T PTZ00320        141 LQTNFDRNTCILMNDQRVPLGTRVMYCAGRHVNHKYHLKAVVLANFFV  188 (188)
T ss_pred             CEEEeCCcEEEEECCCCCEeeeEEecchhHHHhhcCCceeeecccccC
Confidence            999999999999999999999999999999999999999999999875

>KOG0901 consensus 60S ribosomal protein L14/L17/L23 [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=8.2e-36  Score=238.68  Aligned_cols=134  Identities=37%  Similarity=0.500  Sum_probs=122.4

Q ss_pred             cccccccccchhh-hheeeccceEEEeeCcCcceEEEEEeeC--C----ccccccCcEEEEEEee--ecCCCcccccceE
Q 030370           44 HEMASGNFLSQQQ-RTFIQMRTVLKVVDNSGAKTVMCIQPLK--G----RKVARLGDTIVASVKE--AMPTGKVKKGQVV  114 (178)
Q Consensus        44 ~~~~~~~~~~~~~-~~mIq~~T~L~VaDNSGAK~v~cI~vl~--~----~k~a~vGD~I~vSVKk--~~p~~kvKKg~V~  114 (178)
                      .++.-.+...++| +.|||++|.++|+||||||.++||++.+  |    .+.|.+||+++++||+  .+|+.++|+|+++
T Consensus         3 ~~~~~gs~~~k~r~s~~~~~g~~incaDNSgAknL~~isv~g~~Grlnrl~~A~~GD~vva~vKka~~~Pe~r~k~g~~~   82 (145)
T KOG0901|consen    3 SRGRGGSSGVKFRISLGLPVGAVINCADNSGAKNLYCISVKGIKGRLNRLPAAGVGDMVVATVKKAHGKPELRKKVGEVL   82 (145)
T ss_pred             ccccCcccchhhhhhhccccceEEEecCCCCcceEEEEEEeccccccccccCCCcCCEEEEEEecccCCCccCcEecccc
Confidence            3444555556666 4599999999999999999999999987  4    3589999999999999  7999999999999


Q ss_pred             EEEEEEEeeeecCCCCceEEecCceEEEEcCCCCceeeEEecchhHhhhcCCcchhhhcccccC
Q 030370          115 HAVVVRAAMQHGRFDGSEVRFDDNAVVLVNKAGEPTGTRVFGPVPHELRRKKHVSILTLAEHLA  178 (178)
Q Consensus       115 kAVIVRtKk~~~R~dG~~ikFddNavVLln~k~~PlGTRI~GPV~~Elr~kk~~KI~SLA~~i~  178 (178)
                      +|+|||++++..|.||++++|+|||+|++|++++|.||+|+|||++|++. .|+||+|+|+.++
T Consensus        83 ~avvVr~~k~~~r~dgs~~~f~dnA~v~~~~~~e~~gs~i~G~v~~e~~~-~~~kias~A~~i~  145 (145)
T KOG0901|consen   83 PAVVVRQKKSKRRKDGSIAYFEDNAGVIVNNKGEPKGSAITGPVGKELAD-LWPKIASLAGLVV  145 (145)
T ss_pred             eeeEEeeccccccCCCcEEEEcCceEEEEcccCccccceeccccChhHhh-hhHHHHhhccccC
Confidence            99999999999999999999999999999999999999999999999999 7999999999874

>KOG3441 consensus Mitochondrial ribosomal protein L14 [Translation, ribosomal structure and biogenesis]

Probab=99.88  E-value=9.6e-23  Score=161.16  Aligned_cols=106  Identities=39%  Similarity=0.635  Sum_probs=94.3

Q ss_pred             eeccceEEEeeCcCc--------ceEEEEEeeCCccccccCcEEEEEEeeecCCCcccccceEEEEEEEEeeeecCCCCc
Q 030370           60 IQMRTVLKVVDNSGA--------KTVMCIQPLKGRKVARLGDTIVASVKEAMPTGKVKKGQVVHAVVVRAAMQHGRFDGS  131 (178)
Q Consensus        60 Iq~~T~L~VaDNSGA--------K~v~cI~vl~~~k~a~vGD~I~vSVKk~~p~~kvKKg~V~kAVIVRtKk~~~R~dG~  131 (178)
                      |++.|+|+|+|||..        +..+||++|+++..+.+||.|+|+||          ||..+|+||......++  | 
T Consensus        32 I~k~tRlrVVDNSaLGk~a~~~gr~PrCIHVYkkrgvg~~GDkiLvAIk----------GQmkKa~vVGh~~~~k~--~-   98 (149)
T KOG3441|consen   32 IHKRTRLRVVDNSALGKEADTTGRLPRCIHVYKKRGVGELGDKILVAIK----------GQMKKAYVVGHVHYRKH--G-   98 (149)
T ss_pred             hhhhheEEEecchhhcccccccCCCCceEEEEecccccccccEEEEEEe----------cceeeeEEEEeeccCCC--C-
Confidence            788999999999974        67899999998889999999999997          89999999997654443  3 


Q ss_pred             eEEecCceEEEEcCCCCceeeEEecchhHhhhcC----CcchhhhcccccC
Q 030370          132 EVRFDDNAVVLVNKAGEPTGTRVFGPVPHELRRK----KHVSILTLAEHLA  178 (178)
Q Consensus       132 ~ikFddNavVLln~k~~PlGTRI~GPV~~Elr~k----k~~KI~SLA~~i~  178 (178)
                      ..+||.|.+||+|++|+|+||||.-|||..||..    .|+|++++|++++
T Consensus        99 ~P~fDsNniVLiddnGnPlGtRI~~PIPT~Lr~~~~~~~ysKVLAiA~~fv  149 (149)
T KOG3441|consen   99 VPVFDSNNIVLIDDNGNPLGTRITAPIPTKLRANRGNVQYSKVLAIANKFV  149 (149)
T ss_pred             CcccCCCcEEEECCCCCcccceEeccCcHHHHhccCCcchhhHHHHHhhcC
Confidence            4789999999999999999999999999999832    5999999999875

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	178
2j01_O	122	Structure Of The Thermus Thermophilus 70s Ribosome		2e-24
2hgj_N	122	Crystal Structure Of The 70s Thermus Thermophilus R		2e-24
1nkw_I	134	Crystal Structure Of The Large Ribosomal Subunit Fr		7e-20
1pnu_I	132	Crystal Structure Of A Streptomycin Dependent Ribos		7e-20
1p85_I	123	Real Space Refined Coordinates Of The 50s Subunit F		8e-20
3ofq_K	122	Crystal Structure Of The E. Coli Ribosome Bound To		9e-20
2wwq_K	121	E.Coli 70s Ribosome Stalled During Translation Of T		9e-20
2j28_K	121	Model Of E. Coli Srp Bound To 70s Rncs Length = 121		1e-19
2gya_I	122	Structure Of The 50s Subunit Of A Pre-Translocation		1e-19
1c04_D	122	Identification Of Known Protein And Rna Structures		3e-19
3bbo_M	121	Homology Model For The Spinach Chloroplast 50s Subu		3e-18
3j21_J	141	Promiscuous Behavior Of Proteins In Archaeal Riboso		4e-08
2zkr_k	140	Structure Of A Mammalian Ribosomal 60s Subunit With		2e-06
3zf7_W	139	High-resolution Cryo-electron Microscopy Structure		3e-06
4a17_J	141	T.Thermophila 60s Ribosomal Subunit In Complex With		8e-05
1ffk_H	132	Crystal Structure Of The Large Ribosomal Subunit Fr		8e-05
1s72_K	132	Refined Crystal Structure Of The Haloarcula Marismo		9e-05
2x7n_C	132	Mechanism Of Eif6s Anti-Association Activity Length		2e-04
3jyw_R	131	Structure Of The 60s Proteins For Eukaryotic Riboso		2e-04
1s1i_R	137	Structure Of The Ribosomal 80s-Eef2-Sordarin Comple		3e-04
3izr_M	140	Localization Of The Large Subunit Ribosomal Protein		3e-04

>pdb|2J01|O Chain O, Structure Of The Thermus Thermophilus 70s Ribosome Complexed With Mrna, Trna And Paromomycin (Part 2 Of 4). This File Contains The 50s Subunit From Molecule I. Length = 122

Iteration: 1
 Score =  108 bits (269), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 58/121 (47%), Positives = 74/121 (61%), Gaps = 2/121 (1%)
Query: 59  FIQMRTVLKVVDNSGAKTVMCIQPLKGR--KVARLGDTIVASVKEAMPTGXXXXXXXXXX 116
            IQ +T L+V DN+GA+ +MCI+ LKG   K A +GD IVASVKEA+P G          
Sbjct: 1   MIQPQTYLEVADNTGARKIMCIRVLKGSNAKYATVGDVIVASVKEAIPRGAVKEGDVVKA 60
Query: 117 XXXXXXMQHGRFDGSEVRFDDNAVVLVNKAGEPTGTRVFGPVPHELRRKKHVSILTLAEH 176
                  +  R DGS +RFDDNA V++N   EP GTRVFGPV  ELR K  + I++LA  
Sbjct: 61  VVVRTKKEIKRPDGSAIRFDDNAAVIINNQLEPRGTRVFGPVARELREKGFMKIVSLAPE 120
Query: 177 L 177
           +
Sbjct: 121 V 121

>pdb|2HGJ|N Chain N, Crystal Structure Of The 70s Thermus Thermophilus Ribosome Showing How The 16s 3'-End Mimicks Mrna E And P Codons. This Entry 2hgj Contains 50s Ribosomal Subunit. The 30s Ribosomal Subunit Can Be Found In Pdb Entry 2hgi. Length = 122

Iteration: 1
 Score =  108 bits (269), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 58/121 (47%), Positives = 74/121 (61%), Gaps = 2/121 (1%)
Query: 59  FIQMRTVLKVVDNSGAKTVMCIQPLKGR--KVARLGDTIVASVKEAMPTGXXXXXXXXXX 116
            IQ +T L+V DN+GA+ +MCI+ LKG   K A +GD IVASVKEA+P G          
Sbjct: 1   MIQPQTYLEVADNTGARKIMCIRVLKGSNAKYATVGDVIVASVKEAIPRGAVKEGDVVKA 60
Query: 117 XXXXXXMQHGRFDGSEVRFDDNAVVLVNKAGEPTGTRVFGPVPHELRRKKHVSILTLAEH 176
                  +  R DGS +RFDDNA V++N   EP GTRVFGPV  ELR K  + I++LA  
Sbjct: 61  VVVRTKKEVKRPDGSAIRFDDNAAVIINNQLEPRGTRVFGPVARELREKGFMKIVSLAPE 120
Query: 177 L 177
           +
Sbjct: 121 V 121

>pdb|1NKW|I Chain I, Crystal Structure Of The Large Ribosomal Subunit From Deinococcus Radiodurans Length = 134

Iteration: 1
 Score = 93.2 bits (230), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 51/126 (40%), Positives = 67/126 (53%), Gaps = 14/126 (11%)
Query: 66  LKVVDNSGAKTVMCIQPLK--------------GRKVARLGDTIVASVKEAMPTGXXXXX 111
           L V DNSGA+ +MCI+ L                ++ A +GD IVASVK+A P G     
Sbjct: 8   LDVADNSGAREIMCIRVLNSGIGGKGLTTGGGGNKRYAHVGDIIVASVKDAAPRGAVKAG 67
Query: 112 XXXXXXXXXXXMQHGRFDGSEVRFDDNAVVLVNKAGEPTGTRVFGPVPHELRRKKHVSIL 171
                          R DGS +RFD NA V++N  GEP GTRVFGPV  ELR ++ + I+
Sbjct: 68  DVVKAVVVRTSHAIKRADGSTIRFDRNAAVIINNQGEPRGTRVFGPVARELRDRRFMKIV 127
Query: 172 TLAEHL 177
           +LA  +
Sbjct: 128 SLAPEV 133

>pdb|1PNU|I Chain I, Crystal Structure Of A Streptomycin Dependent Ribosome From Escherichia Coli, 50s Subunit Of 70s Ribosome. This File, 1pnu, Contains Only Molecules Of The 50s Ribosomal Subunit. The 30s Subunit, Mrna, P-Site Trna, And A-Site Trna Are In The Pdb File 1pns. Length = 132

Iteration: 1
 Score = 93.2 bits (230), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 51/126 (40%), Positives = 67/126 (53%), Gaps = 14/126 (11%)
Query: 66  LKVVDNSGAKTVMCIQPLK--------------GRKVARLGDTIVASVKEAMPTGXXXXX 111
           L V DNSGA+ +MCI+ L                ++ A +GD IVASVK+A P G     
Sbjct: 7   LDVADNSGAREIMCIRVLNSGIGGKGLTTGGGGNKRYAHVGDIIVASVKDAAPRGAVKAG 66
Query: 112 XXXXXXXXXXXMQHGRFDGSEVRFDDNAVVLVNKAGEPTGTRVFGPVPHELRRKKHVSIL 171
                          R DGS +RFD NA V++N  GEP GTRVFGPV  ELR ++ + I+
Sbjct: 67  DVVKAVVVRTSHAIKRADGSTIRFDRNAAVIINNQGEPRGTRVFGPVARELRDRRFMKIV 126
Query: 172 TLAEHL 177
           +LA  +
Sbjct: 127 SLAPEV 132

>pdb|1P85|I Chain I, Real Space Refined Coordinates Of The 50s Subunit Fitted Into The Low Resolution Cryo-Em Map Of The Ef-G.Gtp State Of E. Coli 70s Ribosome Length = 123

Iteration: 1
 Score = 93.2 bits (230), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 54/122 (44%), Positives = 71/122 (58%), Gaps = 3/122 (2%)
Query: 59  FIQMRTVLKVVDNSGAKTVMCIQPLKG--RKVARLGDTIVASVKEAMPTGXXXXXXXXXX 116
            IQ +T+L V DNSGA+ VMCI+ L G  R+ A +GD I  ++KEA+P G          
Sbjct: 1   MIQEQTMLNVADNSGARRVMCIKVLGGSHRRYAGVGDIIKITIKEAIPRGKVKKGDVLKA 60
Query: 117 XXXXXXMQHGRFDGSEVRFDDNAVVLVNKAGE-PTGTRVFGPVPHELRRKKHVSILTLAE 175
                     R DGS +RFD NA VL+N   E P GTR+FGPV  ELR +K + I++LA 
Sbjct: 61  VVVRTKKGVRRPDGSVIRFDGNACVLLNNNSEQPIGTRIFGPVTRELRSEKFMKIISLAP 120
Query: 176 HL 177
            +
Sbjct: 121 EV 122

>pdb|3OFQ|K Chain K, Crystal Structure Of The E. Coli Ribosome Bound To Erythromycin. This File Contains The 50s Subunit Of The Second 70s Ribosome. Length = 122

Iteration: 1
 Score = 92.8 bits (229), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 54/122 (44%), Positives = 71/122 (58%), Gaps = 3/122 (2%)
Query: 59  FIQMRTVLKVVDNSGAKTVMCIQPLKG--RKVARLGDTIVASVKEAMPTGXXXXXXXXXX 116
            IQ +T+L V DNSGA+ VMCI+ L G  R+ A +GD I  ++KEA+P G          
Sbjct: 1   MIQEQTMLNVADNSGARRVMCIKVLGGSHRRYAGVGDIIKITIKEAIPRGKVKKGDVLKA 60
Query: 117 XXXXXXMQHGRFDGSEVRFDDNAVVLVNKAGE-PTGTRVFGPVPHELRRKKHVSILTLAE 175
                     R DGS +RFD NA VL+N   E P GTR+FGPV  ELR +K + I++LA 
Sbjct: 61  VVVRTKKGVRRPDGSVIRFDGNACVLLNNNSEQPIGTRIFGPVTRELRSEKFMKIISLAP 120
Query: 176 HL 177
            +
Sbjct: 121 EV 122

>pdb|2WWQ|K Chain K, E.Coli 70s Ribosome Stalled During Translation Of Tnac Leader Peptide. This File Contains The 50s, The P-Site Trna And The Tnac Leader Peptide (Part 2 Of 2) Length = 121

Iteration: 1
 Score = 92.8 bits (229), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 54/119 (45%), Positives = 70/119 (58%), Gaps = 3/119 (2%)
Query: 59  FIQMRTVLKVVDNSGAKTVMCIQPLKG--RKVARLGDTIVASVKEAMPTGXXXXXXXXXX 116
            IQ +T+L V DNSGA+ VMCI+ L G  R+ A +GD I  ++KEA+P G          
Sbjct: 1   MIQEQTMLNVADNSGARRVMCIKVLGGSHRRYAGVGDIIKITIKEAIPRGKVKKGDVLKA 60
Query: 117 XXXXXXMQHGRFDGSEVRFDDNAVVLVNKAGE-PTGTRVFGPVPHELRRKKHVSILTLA 174
                     R DGS +RFD NA VL+N   E P GTR+FGPV  ELR +K + I++LA
Sbjct: 61  VVVRTKKGVRRPDGSVIRFDGNACVLLNNNSEQPIGTRIFGPVTRELRSEKFMKIISLA 119

>pdb|2J28|K Chain K, Model Of E. Coli Srp Bound To 70s Rncs Length = 121

Iteration: 1
 Score = 92.8 bits (229), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 54/121 (44%), Positives = 71/121 (58%), Gaps = 3/121 (2%)
Query: 60  IQMRTVLKVVDNSGAKTVMCIQPLKG--RKVARLGDTIVASVKEAMPTGXXXXXXXXXXX 117
           IQ +T+L V DNSGA+ VMCI+ L G  R+ A +GD I  ++KEA+P G           
Sbjct: 1   IQEQTMLNVADNSGARRVMCIKVLGGSHRRYAGVGDIIKITIKEAIPRGKVKKGDVLKAV 60
Query: 118 XXXXXMQHGRFDGSEVRFDDNAVVLVNKAGE-PTGTRVFGPVPHELRRKKHVSILTLAEH 176
                    R DGS +RFD NA VL+N   E P GTR+FGPV  ELR +K + I++LA  
Sbjct: 61  VVRTKKGVRRPDGSVIRFDGNACVLLNNNSEQPIGTRIFGPVTRELRSEKFMKIISLAPE 120
Query: 177 L 177
           +
Sbjct: 121 V 121

>pdb|2GYA|I Chain I, Structure Of The 50s Subunit Of A Pre-Translocational E. Coli Ribosome Obtained By Fitting Atomic Models For Rna And Protein Components Into Cryo-Em Map Emd-1056 Length = 122

Iteration: 1
 Score = 92.8 bits (229), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 54/121 (44%), Positives = 71/121 (58%), Gaps = 3/121 (2%)
Query: 60  IQMRTVLKVVDNSGAKTVMCIQPLKG--RKVARLGDTIVASVKEAMPTGXXXXXXXXXXX 117
           IQ +T+L V DNSGA+ VMCI+ L G  R+ A +GD I  ++KEA+P G           
Sbjct: 1   IQEQTMLNVADNSGARRVMCIKVLGGSHRRYAGVGDIIKITIKEAIPRGKVKKGDVLKAV 60
Query: 118 XXXXXMQHGRFDGSEVRFDDNAVVLVNKAGE-PTGTRVFGPVPHELRRKKHVSILTLAEH 176
                    R DGS +RFD NA VL+N   E P GTR+FGPV  ELR +K + I++LA  
Sbjct: 61  VVRTKKGVRRPDGSVIRFDGNACVLLNNNSEQPIGTRIFGPVTRELRSEKFMKIISLAPE 120
Query: 177 L 177
           +
Sbjct: 121 V 121

>pdb|1C04|D Chain D, Identification Of Known Protein And Rna Structures In A 5 A Map Of The Large Ribosomal Subunit From Haloarcula Marismortui Length = 122

Iteration: 1
 Score = 91.3 bits (225), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 50/121 (41%), Positives = 68/121 (56%), Gaps = 2/121 (1%)
Query: 59  FIQMRTVLKVVDNSGAKTVMCIQPL--KGRKVARLGDTIVASVKEAMPTGXXXXXXXXXX 116
            IQ  + LKV DNSGA+ V+ I+ L   GR+ A +GD +VA+VK+A P G          
Sbjct: 1   MIQQESRLKVADNSGAREVLVIKVLGGSGRRYANIGDVVVATVKDATPGGVVKKGQVVKA 60
Query: 117 XXXXXXMQHGRFDGSEVRFDDNAVVLVNKAGEPTGTRVFGPVPHELRRKKHVSILTLAEH 176
                     R DGS +RFD+NA V++     P GTR+FGPV  ELR K  + I++LA  
Sbjct: 61  VVVRTKRGVRRPDGSYIRFDENACVIIRDDKSPRGTRIFGPVARELRDKDFMKIISLAPE 120
Query: 177 L 177
           +
Sbjct: 121 V 121

>pdb|3BBO|M Chain M, Homology Model For The Spinach Chloroplast 50s Subunit Fitted To 9.4a Cryo-Em Map Of The 70s Chlororibosome Length = 121

Iteration: 1
 Score = 87.8 bits (216), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 47/118 (39%), Positives = 69/118 (58%), Gaps = 3/118 (2%)
Query: 59  FIQMRTVLKVVDNSGAKTVMCIQPL--KGRKVARLGDTIVASVKEAMPTGXXXXXXXXXX 116
            IQ +T L V DNSGA+ +MCI+ +    R+ AR+GD IVA +KEA+P            
Sbjct: 1   MIQPQTHLNVADNSGARELMCIRIIGASNRRYARIGDVIVAVIKEAIPNTPLERSEVIRA 60
Query: 117 XXXXXXMQHGRFDGSEVRFDDNAVVLVNKAGEPTGTRVFGPVPHELRRKKHVSILTLA 174
                  +  R +G  +R+DDNA V++++ G P GTR+FG +  EL R+K   I++LA
Sbjct: 61  VVVRTCKELKRDNGMIIRYDDNAAVIIDQEGNPKGTRIFGAIAREL-RQKFAKIVSLA 117

>pdb|3J21|J Chain J, Promiscuous Behavior Of Proteins In Archaeal Ribosomes Revealed By Cryo-em: Implications For Evolution Of Eukaryotic Ribosomes (50s Ribosomal Proteins) Length = 141

Iteration: 1
 Score = 54.3 bits (129), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 36/102 (35%), Positives = 51/102 (50%), Gaps = 9/102 (8%)
Query: 66  LKVVDNSGAKTVMCIQPLK----GRKVAR--LGDTIVASVKEAMPTGXXXXXXXXXXXXX 119
           L V DNSGAK +  I  ++     R++A   +GD +VA+VK+  P               
Sbjct: 27  LTVADNSGAKVIQIIGVVEYHGTRRRLASAGVGDMVVATVKKGRPD---MRHQVVRAVII 83
Query: 120 XXXMQHGRFDGSEVRFDDNAVVLVNKAGEPTGTRVFGPVPHE 161
               ++ R DG  V+F+DNA V+V   G P GT + GPV  E
Sbjct: 84  RQRKEYRRLDGMRVKFEDNAAVIVTPEGVPRGTEIRGPVARE 125

>pdb|2ZKR|KK Chain k, Structure Of A Mammalian Ribosomal 60s Subunit Within An 80s Complex Obtained By Docking Homology Models Of The Rna And Proteins Into An 8.7 A Cryo-Em Map Length = 140

Iteration: 1
 Score = 48.1 bits (113), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 33/104 (31%), Positives = 51/104 (49%), Gaps = 9/104 (8%)
Query: 64  TVLKVVDNSGAKT--VMCIQPLKGR----KVARLGDTIVASVKEAMPTGXXXXXXXXXXX 117
            V+   DN+GAK   ++ ++ +KGR      A +GD ++A+VK+  P             
Sbjct: 24  AVINCADNTGAKNLYIISVKGIKGRLNRLPAAGVGDMVMATVKKGKPE---LRKKVHPAV 80
Query: 118 XXXXXMQHGRFDGSEVRFDDNAVVLVNKAGEPTGTRVFGPVPHE 161
                  + R DG  + F+DNA V+VN  GE  G+ + GPV  E
Sbjct: 81  VIRQRKSYRRKDGVFLYFEDNAGVIVNNKGEMKGSAITGPVAKE 124

>pdb|3ZF7|W Chain W, High-resolution Cryo-electron Microscopy Structure Of The Trypanosoma Brucei Ribosome Length = 139

Iteration: 1
 Score = 47.8 bits (112), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 34/104 (32%), Positives = 49/104 (47%), Gaps = 9/104 (8%)
Query: 64  TVLKVVDNSGAKT--VMCIQPLKGR----KVARLGDTIVASVKEAMPTGXXXXXXXXXXX 117
            V+   DN+GAK   ++ ++   GR      A LGD ++ASVK+  P             
Sbjct: 23  AVVNCADNTGAKNLYIISVKGYHGRLNRLPAAALGDMVMASVKKGKPE---LRRKVLNAV 79
Query: 118 XXXXXMQHGRFDGSEVRFDDNAVVLVNKAGEPTGTRVFGPVPHE 161
                    R DG+ + F+DNA V+VN  GE  G+ + GPV  E
Sbjct: 80  IIRQRKSWRRKDGTVIYFEDNAGVIVNPKGEMKGSGIAGPVAKE 123

>pdb|4A17|J Chain J, T.Thermophila 60s Ribosomal Subunit In Complex With Initiation Factor 6. This File Contains 5s Rrna, 5.8s Rrna And Proteins Of Molecule 2. Length = 141

Iteration: 1
 Score = 43.1 bits (100), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 35/105 (33%), Positives = 47/105 (44%), Gaps = 11/105 (10%)
Query: 64  TVLKVVDNSGAK---TVMCIQPLKGR----KVARLGDTIVASVKEAMPTGXXXXXXXXXX 116
            V+   DNSGAK   T+ C   +KG       A +GD I+ SVK+  P            
Sbjct: 25  AVMNCADNSGAKNLYTIACFG-IKGHLSKLPSASIGDMILCSVKKGSPK---LRKKVLQA 80
Query: 117 XXXXXXMQHGRFDGSEVRFDDNAVVLVNKAGEPTGTRVFGPVPHE 161
                     R DG  + F+DNA V+ N  GE  G+++ GPV  E
Sbjct: 81  IVIRQRRPWRRRDGVFIYFEDNAGVIANPKGEMKGSQITGPVAKE 125

>pdb|1FFK|H Chain H, Crystal Structure Of The Large Ribosomal Subunit From Haloarcula Marismortui At 2.4 Angstrom Resolution Length = 132

Iteration: 1
 Score = 43.1 bits (100), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 31/108 (28%), Positives = 51/108 (47%), Gaps = 9/108 (8%)
Query: 64  TVLKVVDNSGAK--TVMCIQPLKGRK----VARLGDTIVASVKEAMPTGXXXXXXXXXXX 117
           +++   DN+GA+   V+ +    G K     A LGD I  SV +  P             
Sbjct: 16  SLITCADNTGARELKVISVHGYSGTKNRHPKAGLGDKITVSVTKGTPEMRRQVLEAVVVR 75
Query: 118 XXXXXMQHGRFDGSEVRFDDNAVVLVNKAGEPTGTRVFGPVPHELRRK 165
                    R DG+ V+F+DNA V+V++  +P GT + GP+  E+ ++
Sbjct: 76  QRKPIR---RPDGTRVKFEDNAAVIVDENEDPRGTELKGPIAREVAQR 120

>pdb|1S72|K Chain K, Refined Crystal Structure Of The Haloarcula Marismortui Large Ribosomal Subunit At 2.4 Angstrom Resolution Length = 132

Iteration: 1
 Score = 43.1 bits (100), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 31/108 (28%), Positives = 51/108 (47%), Gaps = 9/108 (8%)
Query: 64  TVLKVVDNSGAK--TVMCIQPLKGRK----VARLGDTIVASVKEAMPTGXXXXXXXXXXX 117
           +++   DN+GA+   V+ +    G K     A LGD I  SV +  P             
Sbjct: 16  SLITCADNTGARELKVISVHGYSGTKNRLPKAGLGDKITVSVTKGTPEMRRQVLEAVVVR 75
Query: 118 XXXXXMQHGRFDGSEVRFDDNAVVLVNKAGEPTGTRVFGPVPHELRRK 165
                    R DG+ V+F+DNA V+V++  +P GT + GP+  E+ ++
Sbjct: 76  QRKPIR---RPDGTRVKFEDNAAVIVDENEDPRGTELKGPIAREVAQR 120

>pdb|2X7N|C Chain C, Mechanism Of Eif6s Anti-Association Activity Length = 132

Iteration: 1
 Score = 41.6 bits (96), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 32/105 (30%), Positives = 46/105 (43%), Gaps = 11/105 (10%)
Query: 64  TVLKVVDNSGAKTVMCIQPLKGR-------KVARLGDTIVASVKEAMPTGXXXXXXXXXX 116
            ++   DNSGA+ +  I  +KG          A LGD ++A+VK+  P            
Sbjct: 16  AIMNCADNSGARNLYIIA-VKGSGSRLNRLPAASLGDMVMATVKKGKPE---LRKKVMPA 71
Query: 117 XXXXXXMQHGRFDGSEVRFDDNAVVLVNKAGEPTGTRVFGPVPHE 161
                     R DG  + F+DNA V+ N  GE  G+ + GPV  E
Sbjct: 72  IVVRQAKSWRRRDGVFLYFEDNAGVIANPKGEMKGSAITGPVGKE 116

>pdb|3JYW|R Chain R, Structure Of The 60s Proteins For Eukaryotic Ribosome Based On Cryo-Em Map Of Thermomyces Lanuginosus Ribosome At 8.9a Resolution Length = 131

Iteration: 1
 Score = 41.6 bits (96), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 32/105 (30%), Positives = 46/105 (43%), Gaps = 11/105 (10%)
Query: 64  TVLKVVDNSGAKTVMCIQPLKGR-------KVARLGDTIVASVKEAMPTGXXXXXXXXXX 116
            ++   DNSGA+ +  I  +KG          A LGD ++A+VK+  P            
Sbjct: 15  AIMNCADNSGARNLYIIA-VKGSGSRLNRLPAASLGDMVMATVKKGKPE---LRKKVMPA 70
Query: 117 XXXXXXMQHGRFDGSEVRFDDNAVVLVNKAGEPTGTRVFGPVPHE 161
                     R DG  + F+DNA V+ N  GE  G+ + GPV  E
Sbjct: 71  IVVRQAKSWRRRDGVFLYFEDNAGVIANPKGEMKGSAITGPVGKE 115

>pdb|1S1I|R Chain R, Structure Of The Ribosomal 80s-Eef2-Sordarin Complex From Yeast Obtained By Docking Atomic Models For Rna And Protein Components Into A 11.7 A Cryo-Em Map. This File, 1s1i, Contains 60s Subunit. The 40s Ribosomal Subunit Is In File 1s1h. Length = 137

Iteration: 1
 Score = 41.6 bits (96), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 32/105 (30%), Positives = 46/105 (43%), Gaps = 11/105 (10%)
Query: 64  TVLKVVDNSGAKTVMCIQPLKGRK-------VARLGDTIVASVKEAMPTGXXXXXXXXXX 116
            ++   DNSGA+ +  I  +KG          A LGD ++A+VK+  P            
Sbjct: 21  AIMNCADNSGARNLYIIA-VKGSGSRLNRLPAASLGDMVMATVKKGKPE---LRKKVMPA 76
Query: 117 XXXXXXMQHGRFDGSEVRFDDNAVVLVNKAGEPTGTRVFGPVPHE 161
                     R DG  + F+DNA V+ N  GE  G+ + GPV  E
Sbjct: 77  IVVRQAKSWRRRDGVFLYFEDNAGVIANPKGEMKGSAITGPVGKE 121

>pdb|3IZR|M Chain M, Localization Of The Large Subunit Ribosomal Proteins Into A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s Ribosome Length = 140

Iteration: 1
 Score = 41.6 bits (96), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 31/104 (29%), Positives = 49/104 (47%), Gaps = 9/104 (8%)
Query: 64  TVLKVVDNSGAKT--VMCIQPLKGR----KVARLGDTIVASVKEAMPTGXXXXXXXXXXX 117
             +   DN+GAK   ++ ++ +KGR      A +GD ++A+VK+  P             
Sbjct: 24  ATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPD---LRKKVMPAV 80
Query: 118 XXXXXMQHGRFDGSEVRFDDNAVVLVNKAGEPTGTRVFGPVPHE 161
                    R DG  + F+DNA V+VN  GE  G+ + GP+  E
Sbjct: 81  IVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKE 124

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	178
3v2d_O	122	50S ribosomal protein L14; ribosome associated inh	4e-43
1whi_A	122	Ribosomal protein L14; rRNA-binding; 1.50A {Geobac	3e-41
3r8s_K	122	50S ribosomal protein L14; protein biosynthesis, R	2e-40
3bbo_M	121	Ribosomal protein L14; large ribosomal subunit, sp	6e-39
3u5e_V	137	L17A, YL32, 60S ribosomal protein L23-A; translati	1e-33
1vq8_K	132	50S ribosomal protein L14P; ribosome 50S, protein-	1e-32

>3v2d_O 50S ribosomal protein L14; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 2j03_O 2jl6_O 2jl8_O 2v47_O 2v49_O 2wdi_O 2wdj_O 2wdl_O 2wdn_O 2wh2_O 2wh4_O 2wrj_O 2wrl_O 2wro_O 2wrr_O 2x9s_O 2x9u_O 2xg0_O 2xg2_O 2xqe_O ... Length = 122

 Score =  139 bits (350), Expect = 4e-43
 Identities = 68/120 (56%), Positives = 85/120 (70%), Gaps = 2/120 (1%)

Query: 60  IQMRTVLKVVDNSGAKTVMCIQPLKG--RKVARLGDTIVASVKEAMPTGKVKKGQVVHAV 117
           IQ +T L+V DN+GA+ +MCI+ LKG   K A +GD IVASVKEA+P G VK+G VV AV
Sbjct: 2   IQPQTYLEVADNTGARKIMCIRVLKGSNAKYATVGDVIVASVKEAIPRGAVKEGDVVKAV 61

Query: 118 VVRAAMQHGRFDGSEVRFDDNAVVLVNKAGEPTGTRVFGPVPHELRRKKHVSILTLAEHL 177
           VVR   +  R DGS +RFDDNA V++N   EP GTRVFGPV  ELR K  + I++LA  +
Sbjct: 62  VVRTKKEIKRPDGSAIRFDDNAAVIINNQLEPRGTRVFGPVARELREKGFMKIVSLAPEV 121

>1whi_A Ribosomal protein L14; rRNA-binding; 1.50A {Geobacillus stearothermophilus} SCOP: b.39.1.1 PDB: 1giy_N 1ml5_n* 1c04_D 1yl3_N 2b66_O 2b9n_O 2b9p_O 487d_M Length = 122

 Score =  134 bits (338), Expect = 3e-41
 Identities = 62/117 (52%), Positives = 79/117 (67%), Gaps = 2/117 (1%)

Query: 60  IQMRTVLKVVDNSGAKTVMCIQPLKG--RKVARLGDTIVASVKEAMPTGKVKKGQVVHAV 117
           IQ  + LKV DNSGA+ V+ I+ L G  R+ A +GD +VA+VK+A P G VKKGQVV AV
Sbjct: 2   IQQESRLKVADNSGAREVLVIKVLGGSGRRYANIGDVVVATVKDATPGGVVKKGQVVKAV 61

Query: 118 VVRAAMQHGRFDGSEVRFDDNAVVLVNKAGEPTGTRVFGPVPHELRRKKHVSILTLA 174
           VVR      R DGS +RFD+NA V++     P GTR+FGPV  ELR K  + I++LA
Sbjct: 62  VVRTKRGVRRPDGSYIRFDENACVIIRDDKSPRGTRIFGPVARELRDKDFMKIISLA 118

>3r8s_K 50S ribosomal protein L14; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 3oat_K* 3oas_K* 3ofd_K 3ofc_K 3ofr_K* 3ofz_K* 3og0_K 3ofq_K 3r8t_K 3i1n_K 1p85_I 1p86_I 1vs8_K 1vs6_K 2aw4_K 2awb_K 1vt2_K 2i2v_K 2i2t_K* 2qao_K* ... Length = 122

 Score =  132 bits (332), Expect = 2e-40
 Identities = 65/120 (54%), Positives = 82/120 (68%), Gaps = 3/120 (2%)

Query: 60  IQMRTVLKVVDNSGAKTVMCIQPLKG--RKVARLGDTIVASVKEAMPTGKVKKGQVVHAV 117
           IQ +T+L V DNSGA+ VMCI+ L G  R+ A +GD I  ++KEA+P GKVKKG V+ AV
Sbjct: 2   IQEQTMLNVADNSGARRVMCIKVLGGSHRRYAGVGDIIKITIKEAIPRGKVKKGDVLKAV 61

Query: 118 VVRAAMQHGRFDGSEVRFDDNAVVLVNKAGE-PTGTRVFGPVPHELRRKKHVSILTLAEH 176
           VVR      R DGS +RFD NA VL+N   E P GTR+FGPV  ELR +K + I++LA  
Sbjct: 62  VVRTKKGVRRPDGSVIRFDGNACVLLNNNSEQPIGTRIFGPVTRELRSEKFMKIISLAPE 121

>3bbo_M Ribosomal protein L14; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} Length = 121

 Score =  128 bits (322), Expect = 6e-39
 Identities = 53/117 (45%), Positives = 80/117 (68%), Gaps = 3/117 (2%)

Query: 60  IQMRTVLKVVDNSGAKTVMCIQPLKG--RKVARLGDTIVASVKEAMPTGKVKKGQVVHAV 117
           IQ +T L V DNSGA+ +MCI+ +    R+ AR+GD IVA +KEA+P   +++ +V+ AV
Sbjct: 2   IQPQTHLNVADNSGARELMCIRIIGASNRRYARIGDVIVAVIKEAIPNTPLERSEVIRAV 61

Query: 118 VVRAAMQHGRFDGSEVRFDDNAVVLVNKAGEPTGTRVFGPVPHELRRKKHVSILTLA 174
           VVR   +  R +G  +R+DDNA V++++ G P GTR+FG +  EL R+K   I++LA
Sbjct: 62  VVRTCKELKRDNGMIIRYDDNAAVIIDQEGNPKGTRIFGAIAREL-RQKFAKIVSLA 117

>3u5e_V L17A, YL32, 60S ribosomal protein L23-A; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3izc_M 1s1i_R 3izs_M* 3j16_I 3o5h_U 3o58_U 3u5i_V 2x7n_C 3jyw_R 2zkr_k 3iz5_M 3izr_M 4a17_J 4a1a_J 4a1c_J 4a1e_J Length = 137

 Score =  115 bits (289), Expect = 1e-33
 Identities = 36/121 (29%), Positives = 58/121 (47%), Gaps = 10/121 (8%)

Query: 60  IQMRTVLKVVDNSGAKTVMCIQPLKG------RKVARLGDTIVASVKEAMPTGKVKKGQV 113
           + +  ++   DNSGA+ +  I              A LGD ++A+VK+  P     + +V
Sbjct: 17  LPVGAIMNCADNSGARNLYIIAVKGSGSRLNRLPAASLGDMVMATVKKGKPE---LRKKV 73

Query: 114 VHAVVVRAAMQHGRFDGSEVRFDDNAVVLVNKAGEPTGTRVFGPVPHELRRKKHVSILTL 173
           + A+VVR A    R DG  + F+DNA V+ N  GE  G+ + GPV  E        + + 
Sbjct: 74  MPAIVVRQAKSWRRRDGVFLYFEDNAGVIANPKGEMKGSAITGPVGKEC-ADLWPRVASN 132

Query: 174 A 174
           +
Sbjct: 133 S 133

>1vq8_K 50S ribosomal protein L14P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: b.39.1.1 PDB: 1vq4_K* 1vq5_K* 1vq6_K* 1vq7_K* 1s72_K* 1vq9_K* 1vqk_K* 1vql_K* 1vqm_K* 1vqn_K* 1vqo_K* 1vqp_K* 1yhq_K* 1yi2_K* 1yij_K* 1yit_K* 1yj9_K* 1yjn_K* 1yjw_K* 2otj_K* ... Length = 132

 Score =  112 bits (282), Expect = 1e-32
 Identities = 39/129 (30%), Positives = 64/129 (49%), Gaps = 10/129 (7%)

Query: 52  LSQQQRTFIQMRTVLKVVDNSGAKTVMCIQPLKGRK------VARLGDTIVASVKEAMPT 105
           L       ++  +++   DN+GA+ +  I              A LGD I  SV +  P 
Sbjct: 4   LGADVTQGLEKGSLITCADNTGARELKVISVHGYSGTKNRLPKAGLGDKITVSVTKGTP- 62

Query: 106 GKVKKGQVVHAVVVRAAMQHGRFDGSEVRFDDNAVVLVNKAGEPTGTRVFGPVPHELRRK 165
               + QV+ AVVVR      R DG+ V+F+DNA V+V++  +P GT + GP+  E+  +
Sbjct: 63  --EMRRQVLEAVVVRQRKPIRRPDGTRVKFEDNAAVIVDENEDPRGTELKGPIAREV-AQ 119

Query: 166 KHVSILTLA 174
           +  S+ + A
Sbjct: 120 RFGSVASAA 128

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	178
3v2d_O	122	50S ribosomal protein L14; ribosome associated inh	100.0
1whi_A	122	Ribosomal protein L14; rRNA-binding; 1.50A {Geobac	100.0
3r8s_K	122	50S ribosomal protein L14; protein biosynthesis, R	100.0
3bbo_M	121	Ribosomal protein L14; large ribosomal subunit, sp	100.0
1vq8_K	132	50S ribosomal protein L14P; ribosome 50S, protein-	100.0
3j21_J	141	50S ribosomal protein L14P; archaea, archaeal, KIN	100.0
3u5e_V	137	L17A, YL32, 60S ribosomal protein L23-A; translati	100.0

>3v2d_O 50S ribosomal protein L14; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 2j03_O 2jl6_O 2jl8_O 2v47_O 2v49_O 2wdi_O 2wdj_O 2wdl_O 2wdn_O 2wh2_O 2wh4_O 2wrj_O 2wrl_O 2wro_O 2wrr_O 2x9s_O 2x9u_O 2xg0_O 2xg2_O 2xqe_O ...

Probab=100.00  E-value=5.5e-54  Score=334.46  Aligned_cols=120  Identities=57%  Similarity=0.858  Sum_probs=117.6

Q ss_pred             eeeccceEEEeeCcCcceEEEEEeeCC--ccccccCcEEEEEEeeecCCCcccccceEEEEEEEEeeeecCCCCceEEec
Q 030370           59 FIQMRTVLKVVDNSGAKTVMCIQPLKG--RKVARLGDTIVASVKEAMPTGKVKKGQVVHAVVVRAAMQHGRFDGSEVRFD  136 (178)
Q Consensus        59 mIq~~T~L~VaDNSGAK~v~cI~vl~~--~k~a~vGD~I~vSVKk~~p~~kvKKg~V~kAVIVRtKk~~~R~dG~~ikFd  136 (178)
                      |||.+|+|+|+||||||.++||+++++  +++|++||+|++|||++.|++++||||+++|||||||++++|+||++++||
T Consensus         1 MIq~~t~L~vaDNSGAk~v~cI~Vlg~~~rr~a~iGD~IvvsVK~~~p~~~vKkg~v~~AVIVRtkk~~rR~dG~~i~Fd   80 (122)
T 3v2d_O            1 MIQPQTYLEVADNTGARKIMCIRVLKGSNAKYATVGDVIVASVKEAIPRGAVKEGDVVKAVVVRTKKEIKRPDGSAIRFD   80 (122)
T ss_dssp             CBCTTCEEEECBSSSEEEEEEEEEESTTTCCCBCTTCEEEEEEEEECSSSSSCTTCEEEEEEEECSSCEECTTSCEEEES
T ss_pred             CCCCCCEEEEeeCCCCcEEEEEEEeCCCCCcccCCCCEEEEEEEEcCCCCccccCCEEEEEEEEeCCccCCCCCcEEEcC
Confidence            999999999999999999999999987  679999999999999999999999999999999999999999999999999


Q ss_pred             CceEEEEcCCCCceeeEEecchhHhhhcCCcchhhhcccccC
Q 030370          137 DNAVVLVNKAGEPTGTRVFGPVPHELRRKKHVSILTLAEHLA  178 (178)
Q Consensus       137 dNavVLln~k~~PlGTRI~GPV~~Elr~kk~~KI~SLA~~i~  178 (178)
                      |||+||+|++++|+|||||||||+|||+++|+||+|||++++
T Consensus        81 dNa~Vlin~~~~p~GTrI~GpVarElr~~~~~KI~SlA~~v~  122 (122)
T 3v2d_O           81 DNAAVIINNQLEPRGTRVFGPVARELREKGFMKIVSLAPEVL  122 (122)
T ss_dssp             SCEEEEECTTSCBSSSCBCSCBCTHHHHTTCHHHHHHSSCBC
T ss_pred             CcEEEEECCCCCEeeeEEEccchHHHhhCCCchhhccccccC
Confidence            999999999999999999999999999999999999999875

>1whi_A Ribosomal protein L14; rRNA-binding; 1.50A {Geobacillus stearothermophilus} SCOP: b.39.1.1 PDB: 1giy_N 1ml5_n* 1c04_D 1yl3_N 2b66_O 2b9n_O 2b9p_O 487d_M

Probab=100.00  E-value=6.7e-54  Score=333.93  Aligned_cols=120  Identities=52%  Similarity=0.793  Sum_probs=117.8

Q ss_pred             eeeccceEEEeeCcCcceEEEEEeeCC--ccccccCcEEEEEEeeecCCCcccccceEEEEEEEEeeeecCCCCceEEec
Q 030370           59 FIQMRTVLKVVDNSGAKTVMCIQPLKG--RKVARLGDTIVASVKEAMPTGKVKKGQVVHAVVVRAAMQHGRFDGSEVRFD  136 (178)
Q Consensus        59 mIq~~T~L~VaDNSGAK~v~cI~vl~~--~k~a~vGD~I~vSVKk~~p~~kvKKg~V~kAVIVRtKk~~~R~dG~~ikFd  136 (178)
                      |||.+|+|+|+||||||+++||+++++  +++|++||+|++|||++.|++++||||+++|||||||++++|+||++++||
T Consensus         1 MIq~~t~l~vaDNSGAk~v~cI~vlgg~~~r~a~iGD~IvvsVK~~~p~~~vkkg~v~~AVIVRtkk~~rR~dG~~i~Fd   80 (122)
T 1whi_A            1 MIQQESRLKVADNSGAREVLVIKVLGGSGRRYANIGDVVVATVKDATPGGVVKKGQVVKAVVVRTKRGVRRPDGSYIRFD   80 (122)
T ss_dssp             CBCTTCEEEECBSSSEEEEEEEEECSSTTCCCBCTTCEEEEEEEEECTTSSSCTTCEEEEEEEECSSCEECTTSCEECCS
T ss_pred             CCCccCEEEEeECCCCcEEEEEEEcCCCcccccccCeEEEEEEEEecCCCccccccEEEEEEEEecCceecCCCCEEEeC
Confidence            999999999999999999999999997  789999999999999999999999999999999999999999999999999


Q ss_pred             CceEEEEcCCCCceeeEEecchhHhhhcCCcchhhhcccccC
Q 030370          137 DNAVVLVNKAGEPTGTRVFGPVPHELRRKKHVSILTLAEHLA  178 (178)
Q Consensus       137 dNavVLln~k~~PlGTRI~GPV~~Elr~kk~~KI~SLA~~i~  178 (178)
                      |||+||+|++++|+|||||||||+|||+++|+||+|||++++
T Consensus        81 dNa~Vlin~~g~p~GTrI~GPVarElr~k~~~KI~SlA~~vl  122 (122)
T 1whi_A           81 ENACVIIRDDKSPRGTRIFGPVARELRDKDFMKIISLAPEVI  122 (122)
T ss_dssp             SCEEEEECTTSCBSSSCBCSCBCTHHHHTTCHHHHHHCSCBC
T ss_pred             CceEEEECCCCCEeeeEEEccchHHHhhcCCcchhhcccccC
Confidence            999999999999999999999999999999999999999875

>3r8s_K 50S ribosomal protein L14; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 3j19_K 3oat_K* 3oas_K* 3ofd_K 3ofc_K 3ofr_K* 3ofz_K* 3og0_K 3ofq_K 3r8t_K 3i1n_K 1p85_I 1p86_I 1vs8_K 1vs6_K 2aw4_K 2awb_K 1vt2_K 2i2v_K 2i2t_K* ...

Probab=100.00  E-value=2.2e-53  Score=331.08  Aligned_cols=119  Identities=54%  Similarity=0.844  Sum_probs=116.5

Q ss_pred             eeeccceEEEeeCcCcceEEEEEeeCC--ccccccCcEEEEEEeeecCCCcccccceEEEEEEEEeeeecCCCCceEEec
Q 030370           59 FIQMRTVLKVVDNSGAKTVMCIQPLKG--RKVARLGDTIVASVKEAMPTGKVKKGQVVHAVVVRAAMQHGRFDGSEVRFD  136 (178)
Q Consensus        59 mIq~~T~L~VaDNSGAK~v~cI~vl~~--~k~a~vGD~I~vSVKk~~p~~kvKKg~V~kAVIVRtKk~~~R~dG~~ikFd  136 (178)
                      |||.+|+|+|+|||||++++||+++++  +++|++||+|++|||++.|++++||||+++|||||||++++|+||++++||
T Consensus         1 MIq~~t~L~vaDNSGAk~v~cI~Vlgg~~r~~a~iGD~IvvsVK~~~p~~~vkkg~v~~AVIVRtkk~~rR~dG~~i~Fd   80 (122)
T 3r8s_K            1 MIQEQTMLNVADNSGARRVMCIKVLGGSHRRYAGVGDIIKITIKEAIPRGKVKKGDVLKAVVVRTKKGVRRPDGSVIRFD   80 (122)
T ss_dssp             CBCTTCEEEECBTTSEEEEEEEEECSSSSCCCBCTTCEEEEEEEEECTTSSSCTTCEEEEEEEECSSCEECTTSCEEEES
T ss_pred             CCCCCCEEEEccCCCCceEEEEEEeCCCCCCcccCCCEEEEEEEEcCCCCccccCCEEEEEEEEeCCcCCCCCCcEEEcC
Confidence            999999999999999999999999987  678999999999999999999999999999999999999999999999999


Q ss_pred             CceEEEEcCC-CCceeeEEecchhHhhhcCCcchhhhccccc
Q 030370          137 DNAVVLVNKA-GEPTGTRVFGPVPHELRRKKHVSILTLAEHL  177 (178)
Q Consensus       137 dNavVLln~k-~~PlGTRI~GPV~~Elr~kk~~KI~SLA~~i  177 (178)
                      |||+||+|++ ++|+|||||||||+|||+++|+||+|||+++
T Consensus        81 dNa~Vlin~~~g~p~GTrI~GpVarElR~~~~~KI~SlA~~v  122 (122)
T 3r8s_K           81 GNACVLLNNNSEQPIGTRIFGPVTRELRSEKFMKIISLAPEV  122 (122)
T ss_dssp             SCEEEEEETTTEEESCSCBCSCCCGGGGSGGGHHHHHSSSCC
T ss_pred             CceEEEEeCCCCCEeeeEEEccccHHHhHcCCchhhccccCC
Confidence            9999999999 9999999999999999999999999999975

>3bbo_M Ribosomal protein L14; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}

Probab=100.00  E-value=3.1e-53  Score=329.79  Aligned_cols=119  Identities=45%  Similarity=0.776  Sum_probs=116.7

Q ss_pred             eeeccceEEEeeCcCcceEEEEEeeCC--ccccccCcEEEEEEeeecCCCcccccceEEEEEEEEeeeecCCCCceEEec
Q 030370           59 FIQMRTVLKVVDNSGAKTVMCIQPLKG--RKVARLGDTIVASVKEAMPTGKVKKGQVVHAVVVRAAMQHGRFDGSEVRFD  136 (178)
Q Consensus        59 mIq~~T~L~VaDNSGAK~v~cI~vl~~--~k~a~vGD~I~vSVKk~~p~~kvKKg~V~kAVIVRtKk~~~R~dG~~ikFd  136 (178)
                      |||.+|+|+|+||||||.++||+++++  +++|++||+|++|||++.|++++||||+++|||||||++++|+||++++||
T Consensus         1 MIq~~t~l~vaDNSGAk~v~cI~Vlgg~~~r~a~iGD~IvvsVK~~~p~~~vkkg~v~~AVIVRtkk~~rR~dG~~i~Fd   80 (121)
T 3bbo_M            1 MIQPQTHLNVADNSGARELMCIRIIGASNRRYARIGDVIVAVIKEAIPNTPLERSEVIRAVVVRTCKELKRDNGMIIRYD   80 (121)
T ss_dssp             CCCSSCEEEECSSSSEEEEEEEEECSSSCCCCCCTTCEEEEEEEEECSSSSSCSSCEEEEEEEECSSCEECTTSCEECCS
T ss_pred             CCCccCEEEEeeCCCCcEEEEEEEcCCCCccccccCcEEEEEEEEccCCCccccCcEEEEEEEEecCccccCCCCEEEeC
Confidence            999999999999999999999999997  789999999999999999999999999999999999999999999999999


Q ss_pred             CceEEEEcCCCCceeeEEecchhHhhhcCCcchhhhcccccC
Q 030370          137 DNAVVLVNKAGEPTGTRVFGPVPHELRRKKHVSILTLAEHLA  178 (178)
Q Consensus       137 dNavVLln~k~~PlGTRI~GPV~~Elr~kk~~KI~SLA~~i~  178 (178)
                      |||+||+|++++|+|||||||||+|||+ +|+||+|||++++
T Consensus        81 dNa~Vlin~~g~p~GTrI~GPVarElr~-~~~KI~SlA~~vl  121 (121)
T 3bbo_M           81 DNAAVIIDQEGNPKGTRIFGAIARELRQ-KFAKIVSLAPEVL  121 (121)
T ss_dssp             SCEEEECCTTSSCSSSCCCSCCCGGGTT-TCHHHHHHSSCCC
T ss_pred             CceEEEECCCCCEeEeEEEcCcCHHHHh-cchHhhhccchhC
Confidence            9999999999999999999999999999 8999999999875

>1vq8_K 50S ribosomal protein L14P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: b.39.1.1 PDB: 1vq4_K* 1vq5_K* 1vq6_K* 1vq7_K* 1s72_K* 1vq9_K* 1vqk_K* 1vql_K* 1vqm_K* 1vqn_K* 1vqo_K* 1vqp_K* 1yhq_K* 1yi2_K* 1yij_K* 1yit_K* 1yj9_K* 1yjn_K* 1yjw_K* 2otj_K* ...

Probab=100.00  E-value=7.7e-50  Score=314.66  Aligned_cols=117  Identities=33%  Similarity=0.549  Sum_probs=112.2

Q ss_pred             heeeccceEEEeeCcCcceEEEEEeeC--C--ccc--cccCcEEEEEEeeecCCCcccccceEEEEEEEEeeeecCCCCc
Q 030370           58 TFIQMRTVLKVVDNSGAKTVMCIQPLK--G--RKV--ARLGDTIVASVKEAMPTGKVKKGQVVHAVVVRAAMQHGRFDGS  131 (178)
Q Consensus        58 ~mIq~~T~L~VaDNSGAK~v~cI~vl~--~--~k~--a~vGD~I~vSVKk~~p~~kvKKg~V~kAVIVRtKk~~~R~dG~  131 (178)
                      .|||.+|+|+|+||||||.++||++++  +  +++  |++||+|++|||+++|++   |||+++|||||||++++|+||+
T Consensus        10 ~mIq~~t~l~vaDNSGAk~v~cI~V~g~~g~~~r~p~a~iGD~IvvsVKk~~p~~---kg~v~~AVIVRtkk~~rR~dG~   86 (132)
T 1vq8_K           10 QGLEKGSLITCADNTGARELKVISVHGYSGTKNRLPKAGLGDKITVSVTKGTPEM---RRQVLEAVVVRQRKPIRRPDGT   86 (132)
T ss_dssp             CCEETTCEEEECBSSSEEEEEEEEETTCCCCTTCCCEECTTCEEEEEEEEECTTT---TTCEEEEEEEECSSCEECTTSC
T ss_pred             cccccCCEEEEeeCCCCcEEEEEEEeCccCcccccCCCccCcEEEEEEEecCCCC---CCcEEEEEEEEcCCCcCcCCCc
Confidence            599999999999999999999999998  4  456  999999999999999997   6999999999999999999999


Q ss_pred             eEEecCceEEEEcCCCCceeeEEecchhHhhhcCCcchhhhcccccC
Q 030370          132 EVRFDDNAVVLVNKAGEPTGTRVFGPVPHELRRKKHVSILTLAEHLA  178 (178)
Q Consensus       132 ~ikFddNavVLln~k~~PlGTRI~GPV~~Elr~kk~~KI~SLA~~i~  178 (178)
                      +++|||||+||+|++++|+|||||||||+|||+ +|+||+|||++++
T Consensus        87 ~i~FddNA~Vlin~~g~p~GTrI~GPVarElr~-~~~KI~SlA~~v~  132 (132)
T 1vq8_K           87 RVKFEDNAAVIVDENEDPRGTELKGPIAREVAQ-RFGSVASAATMIV  132 (132)
T ss_dssp             EEEESSCEEEEECTTSCBSSSCBCSEECHHHHH-HSHHHHTTCSEEC
T ss_pred             EEEeCCceEEEECCCCCEeEEEEEcCcCHHHHh-cccHhhhcccccC
Confidence            999999999999999999999999999999999 7999999999875

>3j21_J 50S ribosomal protein L14P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}

Probab=100.00  E-value=3.3e-49  Score=313.95  Aligned_cols=118  Identities=39%  Similarity=0.610  Sum_probs=111.9

Q ss_pred             hheeeccceEEEeeCcCcceEEEEEeeC--C--cc--ccccCcEEEEEEeeecCCCcccccceEEEEEEEEeeeecCCCC
Q 030370           57 RTFIQMRTVLKVVDNSGAKTVMCIQPLK--G--RK--VARLGDTIVASVKEAMPTGKVKKGQVVHAVVVRAAMQHGRFDG  130 (178)
Q Consensus        57 ~~mIq~~T~L~VaDNSGAK~v~cI~vl~--~--~k--~a~vGD~I~vSVKk~~p~~kvKKg~V~kAVIVRtKk~~~R~dG  130 (178)
                      -.|||.+|+|+|+|||||++++||++++  +  ++  +|++||+|++|||++.|+.   |||+++|||||||++++|+||
T Consensus        18 ~~mIq~~t~L~VaDNSGAk~v~cI~Vlg~kg~~~r~~~A~iGD~IvvsVKk~~p~~---kg~V~kAVIVRtkk~~rR~dG   94 (141)
T 3j21_J           18 TRALPVGAYLTVADNSGAKVIQIIGVVEYHGTRRRLASAGVGDMVVATVKKGRPDM---RHQVVRAVIIRQRKEYRRLDG   94 (141)
T ss_dssp             CCCBCTTCEEEECSSSSEEEEEEEEETTCCCCTTCCCCBCSSCEEEEEEEEECTTT---TTCEEEEEEEECSSCEECTTS
T ss_pred             cceeccCCEEEEccCCCCcEEEEEEEcCCCCcccccccCCcCCEEEEEEEecCCCC---cCceEEEEEEEeCCccCCCCC
Confidence            4699999999999999999999999998  3  33  5999999999999999998   599999999999999999999


Q ss_pred             ceEEecCceEEEEcCCCCceeeEEecchhHhhhcCCcchhhhcccccC
Q 030370          131 SEVRFDDNAVVLVNKAGEPTGTRVFGPVPHELRRKKHVSILTLAEHLA  178 (178)
Q Consensus       131 ~~ikFddNavVLln~k~~PlGTRI~GPV~~Elr~kk~~KI~SLA~~i~  178 (178)
                      ++++|||||+||+|++++|+|||||||||+|||+ +|+||+|||+.++
T Consensus        95 s~i~FddNA~VLin~~g~p~GTRI~GPVarElr~-~~~KI~SlA~~iv  141 (141)
T 3j21_J           95 MRVKFEDNAAVIVTPEGVPRGTEIRGPVAREAAE-RWVRIGSIASIIV  141 (141)
T ss_dssp             CEECCSSCEEEEBCTTSCBCSSCCCSEECHHHHH-HCHHHHHHCSEEC
T ss_pred             cEEEcCCcEEEEECCCCCEeeeEEEccccHHHHh-hchHHhhcccccC
Confidence            9999999999999999999999999999999999 5999999999875

>3u5e_V L17A, YL32, 60S ribosomal protein L23-A; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3izc_M 1s1i_R 3izs_M* 3j16_I 3o5h_U 3o58_U 3u5i_V 4b6a_V 2x7n_C 3jyw_R 2zkr_k 3iz5_M 3izr_M 4a17_J 4a1a_J 4a1c_J 4a1e_J

Probab=100.00  E-value=1.1e-48  Score=309.62  Aligned_cols=117  Identities=32%  Similarity=0.439  Sum_probs=111.6

Q ss_pred             heeeccceEEEeeCcCcceEEEEEeeCC--c----cccccCcEEEEEEeeecCCCcccccceEEEEEEEEeeeecCCCCc
Q 030370           58 TFIQMRTVLKVVDNSGAKTVMCIQPLKG--R----KVARLGDTIVASVKEAMPTGKVKKGQVVHAVVVRAAMQHGRFDGS  131 (178)
Q Consensus        58 ~mIq~~T~L~VaDNSGAK~v~cI~vl~~--~----k~a~vGD~I~vSVKk~~p~~kvKKg~V~kAVIVRtKk~~~R~dG~  131 (178)
                      .+||++|+|+|+||||||.++||+++++  +    ++|++||+|++|||++.|+.   |||+++|||||||++++|+||+
T Consensus        15 ~gl~~~t~L~VaDNSGAk~v~cI~Vlg~~~r~~r~~~A~iGD~IvvsVK~~~p~~---k~~V~~AVIVRtkk~~rR~dG~   91 (137)
T 3u5e_V           15 LGLPVGAIMNCADNSGARNLYIIAVKGSGSRLNRLPAASLGDMVMATVKKGKPEL---RKKVMPAIVVRQAKSWRRRDGV   91 (137)
T ss_dssp             CCEETTCEEEECBSSSBCEEEEEEETTCCCCTTCCCEECTTCEEEEECSSBCTTT---TTSCEEEEEEECCSCEECTTSC
T ss_pred             ccccCCCEEEEeeCCCCcEEEEEEEeCCCCcccccccCCcCCEEEEEEEECCCCC---CCcEEEEEEEEeccccCcCCCe
Confidence            4799999999999999999999999985  2    48999999999999999998   5899999999999999999999


Q ss_pred             eEEecCceEEEEcCCCCceeeEEecchhHhhhcCCcchhhhcccccC
Q 030370          132 EVRFDDNAVVLVNKAGEPTGTRVFGPVPHELRRKKHVSILTLAEHLA  178 (178)
Q Consensus       132 ~ikFddNavVLln~k~~PlGTRI~GPV~~Elr~kk~~KI~SLA~~i~  178 (178)
                      +++|||||+||+|++++|+|||||||||+|||++ |+||+|||++++
T Consensus        92 ~i~FddNA~Vlin~~g~p~GTrI~GPVarElr~~-~~KI~SlA~~vv  137 (137)
T 3u5e_V           92 FLYFEDNAGVIANPKGEMKGSAITGPVGKECADL-WPRVASNSGVVV  137 (137)
T ss_dssp             EEEESSCEEEEBCTTCCBSSSCBCSCBCHHHHTT-CHHHHHTCSSBC
T ss_pred             EEEcCCceEEEECCCCCEeeeEEEcchhHHHHHH-hhHHHhcccccC
Confidence            9999999999999999999999999999999996 999999999985

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	178
d2j01o1	122	b.39.1.1 (O:1-122) Ribosomal protein L14 {Thermus	2e-49
d1whia_	122	b.39.1.1 (A:) Ribosomal protein L14 {Bacillus stea	2e-45
d2gyci1	121	b.39.1.1 (I:2-122) Ribosomal protein L14 {Escheric	2e-45
d1vqok1	132	b.39.1.1 (K:1-132) Ribosomal protein L14 {Archaeon	4e-42

>d2j01o1 b.39.1.1 (O:1-122) Ribosomal protein L14 {Thermus thermophilus [TaxId: 274]} Length = 122

class: All beta proteins
fold: Ribosomal protein L14
superfamily: Ribosomal protein L14
family: Ribosomal protein L14
domain: Ribosomal protein L14
species: Thermus thermophilus [TaxId: 274]

 Score =  153 bits (389), Expect = 2e-49
 Identities = 68/117 (58%), Positives = 84/117 (71%), Gaps = 2/117 (1%)

Query: 60  IQMRTVLKVVDNSGAKTVMCIQPLKG--RKVARLGDTIVASVKEAMPTGKVKKGQVVHAV 117
           IQ +T L+V DN+GA+ +MCI+ LKG   K A +GD IVASVKEA+P G VK+G VV AV
Sbjct: 2   IQPQTYLEVADNTGARKIMCIRVLKGSNAKYATVGDVIVASVKEAIPRGAVKEGDVVKAV 61

Query: 118 VVRAAMQHGRFDGSEVRFDDNAVVLVNKAGEPTGTRVFGPVPHELRRKKHVSILTLA 174
           VVR   +  R DGS +RFDDNA V++N   EP GTRVFGPV  ELR K  + I++LA
Sbjct: 62  VVRTKKEIKRPDGSAIRFDDNAAVIINNQLEPRGTRVFGPVARELREKGFMKIVSLA 118

>d1whia_ b.39.1.1 (A:) Ribosomal protein L14 {Bacillus stearothermophilus [TaxId: 1422]} Length = 122

class: All beta proteins
fold: Ribosomal protein L14
superfamily: Ribosomal protein L14
family: Ribosomal protein L14
domain: Ribosomal protein L14
species: Bacillus stearothermophilus [TaxId: 1422]

 Score =  143 bits (363), Expect = 2e-45
 Identities = 62/117 (52%), Positives = 79/117 (67%), Gaps = 2/117 (1%)

Query: 60  IQMRTVLKVVDNSGAKTVMCIQPLKG--RKVARLGDTIVASVKEAMPTGKVKKGQVVHAV 117
           IQ  + LKV DNSGA+ V+ I+ L G  R+ A +GD +VA+VK+A P G VKKGQVV AV
Sbjct: 2   IQQESRLKVADNSGAREVLVIKVLGGSGRRYANIGDVVVATVKDATPGGVVKKGQVVKAV 61

Query: 118 VVRAAMQHGRFDGSEVRFDDNAVVLVNKAGEPTGTRVFGPVPHELRRKKHVSILTLA 174
           VVR      R DGS +RFD+NA V++     P GTR+FGPV  ELR K  + I++LA
Sbjct: 62  VVRTKRGVRRPDGSYIRFDENACVIIRDDKSPRGTRIFGPVARELRDKDFMKIISLA 118

>d2gyci1 b.39.1.1 (I:2-122) Ribosomal protein L14 {Escherichia coli [TaxId: 562]} Length = 121

class: All beta proteins
fold: Ribosomal protein L14
superfamily: Ribosomal protein L14
family: Ribosomal protein L14
domain: Ribosomal protein L14
species: Escherichia coli [TaxId: 562]

 Score =  143 bits (363), Expect = 2e-45
 Identities = 64/118 (54%), Positives = 81/118 (68%), Gaps = 3/118 (2%)

Query: 60  IQMRTVLKVVDNSGAKTVMCIQPLKGR--KVARLGDTIVASVKEAMPTGKVKKGQVVHAV 117
           IQ +T+L V DNSGA+ VMCI+ L G   + A +GD I  ++KEA+P GKVKKG V+ AV
Sbjct: 1   IQEQTMLNVADNSGARRVMCIKVLGGSHRRYAGVGDIIKITIKEAIPRGKVKKGDVLKAV 60

Query: 118 VVRAAMQHGRFDGSEVRFDDNAVVLVNKAGE-PTGTRVFGPVPHELRRKKHVSILTLA 174
           VVR      R DGS +RFD NA VL+N   E P GTR+FGPV  ELR +K + I++LA
Sbjct: 61  VVRTKKGVRRPDGSVIRFDGNACVLLNNNSEQPIGTRIFGPVTRELRSEKFMKIISLA 118

>d1vqok1 b.39.1.1 (K:1-132) Ribosomal protein L14 {Archaeon Haloarcula marismortui [TaxId: 2238]} Length = 132

class: All beta proteins
fold: Ribosomal protein L14
superfamily: Ribosomal protein L14
family: Ribosomal protein L14
domain: Ribosomal protein L14
species: Archaeon Haloarcula marismortui [TaxId: 2238]

 Score =  135 bits (341), Expect = 4e-42
 Identities = 38/121 (31%), Positives = 63/121 (52%), Gaps = 10/121 (8%)

Query: 60  IQMRTVLKVVDNSGAKTVMCIQPLKG------RKVARLGDTIVASVKEAMPTGKVKKGQV 113
           ++  +++   DN+GA+ +  I              A LGD I  SV +  P     + QV
Sbjct: 12  LEKGSLITCADNTGARELKVISVHGYSGTKNRLPKAGLGDKITVSVTKGTP---EMRRQV 68

Query: 114 VHAVVVRAAMQHGRFDGSEVRFDDNAVVLVNKAGEPTGTRVFGPVPHELRRKKHVSILTL 173
           + AVVVR      R DG+ V+F+DNA V+V++  +P GT + GP+  E+  ++  S+ + 
Sbjct: 69  LEAVVVRQRKPIRRPDGTRVKFEDNAAVIVDENEDPRGTELKGPIAREV-AQRFGSVASA 127

Query: 174 A 174
           A
Sbjct: 128 A 128

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	178
d1whia_	122	Ribosomal protein L14 {Bacillus stearothermophilus	100.0
d2j01o1	122	Ribosomal protein L14 {Thermus thermophilus [TaxId	100.0
d2gyci1	121	Ribosomal protein L14 {Escherichia coli [TaxId: 56	100.0
d1vqok1	132	Ribosomal protein L14 {Archaeon Haloarcula marismo	100.0

>d1whia_ b.39.1.1 (A:) Ribosomal protein L14 {Bacillus stearothermophilus [TaxId: 1422]}

class: All beta proteins
fold: Ribosomal protein L14
superfamily: Ribosomal protein L14
family: Ribosomal protein L14
domain: Ribosomal protein L14
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=100.00  E-value=3.2e-52  Score=322.37  Aligned_cols=120  Identities=52%  Similarity=0.793  Sum_probs=117.3

Q ss_pred             eeeccceEEEeeCcCcceEEEEEeeCC--ccccccCcEEEEEEeeecCCCcccccceEEEEEEEEeeeecCCCCceEEec
Q 030370           59 FIQMRTVLKVVDNSGAKTVMCIQPLKG--RKVARLGDTIVASVKEAMPTGKVKKGQVVHAVVVRAAMQHGRFDGSEVRFD  136 (178)
Q Consensus        59 mIq~~T~L~VaDNSGAK~v~cI~vl~~--~k~a~vGD~I~vSVKk~~p~~kvKKg~V~kAVIVRtKk~~~R~dG~~ikFd  136 (178)
                      |||.+|+|+|+||||||.++||+++++  +++|.+||+|+||||+++|++++|||++++|+|||||++++|+||++++||
T Consensus         1 MIq~~t~l~v~DNSGak~v~cI~v~~~~~~~~a~vGD~I~vsVk~~~~~~~vkkg~v~~AvIVrtkk~~~R~dG~~i~F~   80 (122)
T d1whia_           1 MIQQESRLKVADNSGAREVLVIKVLGGSGRRYANIGDVVVATVKDATPGGVVKKGQVVKAVVVRTKRGVRRPDGSYIRFD   80 (122)
T ss_dssp             CBCTTCEEEECBSSSEEEEEEEEECSSTTCCCBCTTCEEEEEEEEECTTSSSCTTCEEEEEEEECSSCEECTTSCEECCS
T ss_pred             CCccCcEEEEeeCCCCCEEEEEEEECCCCccccccCCEEEEEEeecccCCeeEcccceeeEEEEEeeeeeccCCceEEeC
Confidence            999999999999999999999999975  578999999999999999999999999999999999999999999999999


Q ss_pred             CceEEEEcCCCCceeeEEecchhHhhhcCCcchhhhcccccC
Q 030370          137 DNAVVLVNKAGEPTGTRVFGPVPHELRRKKHVSILTLAEHLA  178 (178)
Q Consensus       137 dNavVLln~k~~PlGTRI~GPV~~Elr~kk~~KI~SLA~~i~  178 (178)
                      |||+||+|++++|+||||+||||+|||+++|+||+|||++++
T Consensus        81 ~Na~VLl~~~~~P~GTrI~Gpv~~elr~~~~~Ki~sLA~~vi  122 (122)
T d1whia_          81 ENACVIIRDDKSPRGTRIFGPVARELRDKDFMKIISLAPEVI  122 (122)
T ss_dssp             SCEEEEECTTSCBSSSCBCSCBCTHHHHTTCHHHHHHCSCBC
T ss_pred             CCEEEEECCCCCEeeeeEeccchHHHhhcCCchhhcccchhC
Confidence            999999999999999999999999999999999999999986

>d2j01o1 b.39.1.1 (O:1-122) Ribosomal protein L14 {Thermus thermophilus [TaxId: 274]}

class: All beta proteins
fold: Ribosomal protein L14
superfamily: Ribosomal protein L14
family: Ribosomal protein L14
domain: Ribosomal protein L14
species: Thermus thermophilus [TaxId: 274]

Probab=100.00  E-value=5.8e-52  Score=320.79  Aligned_cols=120  Identities=57%  Similarity=0.858  Sum_probs=117.4

Q ss_pred             eeeccceEEEeeCcCcceEEEEEeeCC--ccccccCcEEEEEEeeecCCCcccccceEEEEEEEEeeeecCCCCceEEec
Q 030370           59 FIQMRTVLKVVDNSGAKTVMCIQPLKG--RKVARLGDTIVASVKEAMPTGKVKKGQVVHAVVVRAAMQHGRFDGSEVRFD  136 (178)
Q Consensus        59 mIq~~T~L~VaDNSGAK~v~cI~vl~~--~k~a~vGD~I~vSVKk~~p~~kvKKg~V~kAVIVRtKk~~~R~dG~~ikFd  136 (178)
                      |||.+|+|+|+|||||+.++||+++++  +++|.+||+|+||||+++|++++||||+++|||||||++++|+||++++||
T Consensus         1 MIq~~t~l~v~DNSGak~v~cI~v~~~~~~~~a~vGD~I~vsVkk~~~~~~vkkg~v~~AvIVrtkk~~~r~dG~~i~F~   80 (122)
T d2j01o1           1 MIQPQTYLEVADNTGARKIMCIRVLKGSNAKYATVGDVIVASVKEAIPRGAVKEGDVVKAVVVRTKKEIKRPDGSAIRFD   80 (122)
T ss_dssp             CCCTTCEEEECSSSSCCEEEEEEECSSTTCCCCCTTCEEEEEEEECCTTCSSCSSCEEEEEEEECSSCEECTTSCEEECS
T ss_pred             CCccCcEEEEeeCCCCcEEEEEEEeCCCCCcccccCcEEEEEEeecccCCccccCcCcceeEEeeecceEcCCCCEEEcC
Confidence            999999999999999999999999975  678999999999999999999999999999999999999999999999999


Q ss_pred             CceEEEEcCCCCceeeEEecchhHhhhcCCcchhhhcccccC
Q 030370          137 DNAVVLVNKAGEPTGTRVFGPVPHELRRKKHVSILTLAEHLA  178 (178)
Q Consensus       137 dNavVLln~k~~PlGTRI~GPV~~Elr~kk~~KI~SLA~~i~  178 (178)
                      |||+||+|++++|+||||+||||+|||+++|+||+|||++++
T Consensus        81 ~Na~VLl~~~~~p~GTrI~Gpv~~elr~~~~~Ki~slA~~vi  122 (122)
T d2j01o1          81 DNAAVIINNQLEPRGTRVFGPVARELREKGFMKIVSLAPEVL  122 (122)
T ss_dssp             SCEEEEECTTSCCSSSCCCSCCCTHHHHHCCHHHHHHCSCCC
T ss_pred             CCEEEEECCCCCEeeeEEeccchHHHhhcCCchhhccccccC
Confidence            999999999999999999999999999999999999999986

>d2gyci1 b.39.1.1 (I:2-122) Ribosomal protein L14 {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Ribosomal protein L14
superfamily: Ribosomal protein L14
family: Ribosomal protein L14
domain: Ribosomal protein L14
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=2.7e-50  Score=311.12  Aligned_cols=118  Identities=54%  Similarity=0.850  Sum_probs=114.1

Q ss_pred             eeccceEEEeeCcCcceEEEEEeeCC--ccccccCcEEEEEEeeecCCCcccccceEEEEEEEEeeeecCCCCceEEecC
Q 030370           60 IQMRTVLKVVDNSGAKTVMCIQPLKG--RKVARLGDTIVASVKEAMPTGKVKKGQVVHAVVVRAAMQHGRFDGSEVRFDD  137 (178)
Q Consensus        60 Iq~~T~L~VaDNSGAK~v~cI~vl~~--~k~a~vGD~I~vSVKk~~p~~kvKKg~V~kAVIVRtKk~~~R~dG~~ikFdd  137 (178)
                      ||.+|+|+|+|||||+.++||+++++  +++|++||+|+||||+++|++++|||++++|||||||++++|+||++++|||
T Consensus         1 IQ~~S~l~v~DNSGak~v~cI~vl~~~~~~~a~vGD~I~vsVk~~~~~~~vkkg~v~~AvIVrtkk~~~R~dG~~i~F~~   80 (121)
T d2gyci1           1 IQEQTMLNVADNSGARRVMCIKVLGGSHRRYAGVGDIIKITIKEAIPRGKVKKGDVLKAVVVRTKKGVRRPDGSVIRFDG   80 (121)
T ss_dssp             CCTTCEEEECSCSSBCEEEEEEETTCCSSSCCCTTCEEEECCCSBCSSSSCCTTCCEEEEEEECSSCEECTTSCEECCSS
T ss_pred             CCcCCeEEEeeCCCccEEEEEEEeCCCCCccCccCcEEEEEEEEccCCCccccccEEEEEEEEEeeeEeccCCeEEEeCC
Confidence            78999999999999999999999975  6789999999999999999999999999999999999999999999999999


Q ss_pred             ceEEEEcCCC-CceeeEEecchhHhhhcCCcchhhhccccc
Q 030370          138 NAVVLVNKAG-EPTGTRVFGPVPHELRRKKHVSILTLAEHL  177 (178)
Q Consensus       138 NavVLln~k~-~PlGTRI~GPV~~Elr~kk~~KI~SLA~~i  177 (178)
                      ||+||+|+++ +|+||||+||||+|||+++|+||+|||+++
T Consensus        81 Na~VLi~~~~~~p~GTrI~Gpv~~elr~~~~~Ki~slA~~v  121 (121)
T d2gyci1          81 NACVLLNNNSEQPIGTRIFGPVTRELRSEKFMKIISLAPEV  121 (121)
T ss_dssp             CEEEEECSSSSCBSSSCCCSCBCSTTSSSSCSHHHHTCSCB
T ss_pred             CEEEEEcCCCCCcccCeEEccchHHHhHcCCchhhcccccC
Confidence            9999999997 699999999999999999999999999985

>d1vqok1 b.39.1.1 (K:1-132) Ribosomal protein L14 {Archaeon Haloarcula marismortui [TaxId: 2238]}

class: All beta proteins
fold: Ribosomal protein L14
superfamily: Ribosomal protein L14
family: Ribosomal protein L14
domain: Ribosomal protein L14
species: Archaeon Haloarcula marismortui [TaxId: 2238]

Probab=100.00  E-value=1.2e-47  Score=300.32  Aligned_cols=120  Identities=32%  Similarity=0.483  Sum_probs=111.9

Q ss_pred             hhhheeeccceEEEeeCcCcceEEEEEeeCC--c----cccccCcEEEEEEeeecCCCcccccceEEEEEEEEeeeecCC
Q 030370           55 QQRTFIQMRTVLKVVDNSGAKTVMCIQPLKG--R----KVARLGDTIVASVKEAMPTGKVKKGQVVHAVVVRAAMQHGRF  128 (178)
Q Consensus        55 ~~~~mIq~~T~L~VaDNSGAK~v~cI~vl~~--~----k~a~vGD~I~vSVKk~~p~~kvKKg~V~kAVIVRtKk~~~R~  128 (178)
                      .-.++||.+|.|+|+|||||+.++||+++++  +    ++|++||+|+||||++.|+.   ||++++|||||||++++|+
T Consensus         7 ~~~~~Iq~~s~L~v~DNSGak~v~cI~V~~~~~~k~r~~~a~vGD~IvvsVk~~~~~~---k~~v~~AvIVrtkk~~~R~   83 (132)
T d1vqok1           7 DVTQGLEKGSLITCADNTGARELKVISVHGYSGTKNRLPKAGLGDKITVSVTKGTPEM---RRQVLEAVVVRQRKPIRRP   83 (132)
T ss_dssp             EECCCEETTCEEEECBSSSEEEEEEEEETTCCCCTTCCCEECTTCEEEEEEEEECTTT---TTCEEEEEEEECSSCEECT
T ss_pred             cccccccccCEEEEeeCCCCceEEEEEEeccccccccccccccceEEEEEEeecCCCc---ccceEEEEEEEecCcEECC
Confidence            3456899999999999999999999999863  2    35999999999999999984   6999999999999999999


Q ss_pred             CCceEEecCceEEEEcCCCCceeeEEecchhHhhhcCCcchhhhcccccC
Q 030370          129 DGSEVRFDDNAVVLVNKAGEPTGTRVFGPVPHELRRKKHVSILTLAEHLA  178 (178)
Q Consensus       129 dG~~ikFddNavVLln~k~~PlGTRI~GPV~~Elr~kk~~KI~SLA~~i~  178 (178)
                      ||++++|||||+||+|++++|+||||+||||+|||+ +|+||+|||++|+
T Consensus        84 dG~~i~FddNa~VLi~~~~~p~GTRI~GpV~~Elr~-k~~Ki~sLA~~iv  132 (132)
T d1vqok1          84 DGTRVKFEDNAAVIVDENEDPRGTELKGPIAREVAQ-RFGSVASAATMIV  132 (132)
T ss_dssp             TSCEEEESSCEEEEECTTSCBSSSCBCSCBCHHHHH-HSHHHHTTCSCBC
T ss_pred             CCCEEEcCCCEEEEECCCCCEeeeEEeccHhHHHHh-hhhHHHhcccccC
Confidence            999999999999999999999999999999999997 5999999999986