Citrus Sinensis ID: 030373

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------18
MGAFFNEELSFPPVHANFASSQEQLIRFSKNVHDNVHGNIYLDPLALKFIDTEQFQRLRDLKQLGVTHLVYPGAVHSRFEHSLGVYWLAGAAIQKLKQNQGLELGIDNFDIQTVKLAGLLHDVGHGPFSHLFEREFLPRVVSGCKWSHEQMSLKMVDHIVDEHHIDLDFEMIKKVKVS
ccccccccccccccccccccHHHHHcccccEEEccccccEEccHHHHHHHccHHHHHHHccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHcccccccccccccccccccccccccHHHHHHHHHHHHHHHccccccHHHHHHHHcc
ccccccccccccccccccccHHHccccccEEEcccccccEEcccHHEHHcccHHHHHHHHHHHcccEEEEccccccccccccHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHcccccccHHHHHcEcccccccccccHHHHHHHHHHHHHHHccccccHHHcEEEEEc
mgaffneelsfppvhanfasSQEQLIRFSKNVhdnvhgniyldplalkfidtEQFQRLRDLKQlgvthlvypgavhsrfeHSLGVYWLAGAAIQKLKqnqglelgidnfdIQTVKLAGLlhdvghgpfshlfereflprvvsgckwsheqMSLKMVDHIVDEHHIDLDFEMIKKVKVS
MGAFFNEELSFPPVHANFASSQEQLIRFSKNVHDNVHGNIYLDPLALKFIDTEQFQRLRDLKQLGVTHLVYPGAVHSRFEHSLGVYWLAGAAIQKLKQNQGLELGIDNFDIQTVKLAGLLHDVGHGPFSHLFEREFLPRVVSGCKWSHEQMSLKMVDHIVDEHHIDLDFEMIKKVKVS
MGAFFNEELSFPPVHANFASSQEQLIRFSKNVHDNVHGNIYLDPLALKFIDTEQFQRLRDLKQLGVTHLVYPGAVHSRFEHSLGVYWLAGAAIQKLKQNQGLELGIDNFDIQTVKLAGLLHDVGHGPFSHLFEREFLPRVVSGCKWSHEQMSLKMVDHIVDEHHIDLDFEMIKKVKVS
**********************EQLIRFSKNVHDNVHGNIYLDPLALKFIDTEQFQRLRDLKQLGVTHLVYPGAVHSRFEHSLGVYWLAGAAIQKLKQNQGLELGIDNFDIQTVKLAGLLHDVGHGPFSHLFEREFLPRVVSGCKWSHEQMSLKMVDHIVDEHHIDLDFEMIK*****
****F***L*********************NVHDNVHGNIYLDPLALKFIDTEQFQRLRDLKQLGVTHLVYPGAVHSRFEHSLGVYWLAGAAIQKLKQNQGLELGIDNFDIQTVKLAGLLHDVGHGPFSHLFEREFLPRVVSGCKWSHEQMSLKMVDHIVDEHHIDLDFEMIKKVKV*
MGAFFNEELSFPPVHANFASSQEQLIRFSKNVHDNVHGNIYLDPLALKFIDTEQFQRLRDLKQLGVTHLVYPGAVHSRFEHSLGVYWLAGAAIQKLKQNQGLELGIDNFDIQTVKLAGLLHDVGHGPFSHLFEREFLPRVVSGCKWSHEQMSLKMVDHIVDEHHIDLDFEMIKKVKVS
********LSFPPVHANFASSQEQLIRFSKNVHDNVHGNIYLDPLALKFIDTEQFQRLRDLKQLGVTHLVYPGAVHSRFEHSLGVYWLAGAAIQKLKQNQGLELGIDNFDIQTVKLAGLLHDVGHGPFSHLFEREFLPRVVSGCKWSHEQMSLKMVDHIVDEHHIDLDFEMIKKVKVS
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MGAFFNEELSFPPVHANFASSQEQLIRFSKNVHDNVHGNIYLDPLALKFIDTEQFQRLRDLKQLGVTHLVYPGAVHSRFEHSLGVYWLAGAAIQKLKQNQGLELGIDNFDIQTVKLAGLLHDVGHGPFSHLFEREFLPRVVSGCKWSHEQMSLKMVDHIVDEHHIDLDFEMIKKVKVS
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query178 2.2.26 [Sep-21-2011]
Q502K2 622 SAM domain and HD domain- yes no 0.735 0.210 0.545 2e-34
Q5ZJL9 614 SAM domain and HD domain- yes no 0.797 0.231 0.489 2e-34
Q60710 627 SAM domain and HD domain- yes no 0.792 0.224 0.5 3e-34
Q9Y3Z3 626 SAM domain and HD domain- yes no 0.758 0.215 0.5 5e-33
Q0VCA5 589 SAM domain and HD domain- yes no 0.747 0.225 0.5 7e-33
Q6INN8 632 SAM domain and HD domain- N/A no 0.730 0.205 0.496 3e-31
B0G107 514 Protein SAMHD1 homolog OS yes no 0.764 0.264 0.492 1e-30
Q09374 587 Uncharacterized protein Z yes no 0.870 0.264 0.429 3e-28
Q58554 451 Uncharacterized protein M yes no 0.617 0.243 0.415 2e-24
Q5UQ48 457 Putative HD domain-contai N/A no 0.696 0.271 0.391 6e-22
>sp|Q502K2|SAMH1_DANRE SAM domain and HD domain-containing protein 1 OS=Danio rerio GN=samhd1 PE=2 SV=2 Back     alignment and function desciption
 Score =  144 bits (364), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 72/132 (54%), Positives = 95/132 (71%), Gaps = 1/132 (0%)

Query: 30  KNVHDNVHGNIYLDPLALKFIDTEQFQRLRDLKQLGVTHLVYPGAVHSRFEHSLGVYWLA 89
           K  +D +HG+I L PL L FIDT QFQRLR +KQLG T+LV+PGA H+RFEHS+GV +LA
Sbjct: 95  KVFNDPIHGHIELHPLLLHFIDTPQFQRLRHIKQLGGTYLVFPGASHNRFEHSIGVGYLA 154

Query: 90  GAAIQKLKQNQGLELGIDNFDIQTVKLAGLLHDVGHGPFSHLFEREFLPRVVSGCKWSHE 149
           G  ++ L + Q  EL I   DI  V++AGL HD+GHGPFSH+F+  F+P+     KW HE
Sbjct: 155 GCLVKALNERQP-ELFITKQDILCVQIAGLCHDLGHGPFSHMFDGMFIPKARPADKWKHE 213

Query: 150 QMSLKMVDHIVD 161
             S++M DH+V+
Sbjct: 214 IASVQMFDHLVE 225
Putative nuclease involved in innate immune response by acting as a negative regulator of the cell-intrinsic antiviral response.
Danio rerio (taxid: 7955)
EC: 3EC: .EC: 1EC: .EC: 4EC: .EC: -
>sp|Q5ZJL9|SAMH1_CHICK SAM domain and HD domain-containing protein 1 OS=Gallus gallus GN=SAMHD1 PE=2 SV=1 Back     alignment and function description
>sp|Q60710|SAMH1_MOUSE SAM domain and HD domain-containing protein 1 OS=Mus musculus GN=Samhd1 PE=1 SV=2 Back     alignment and function description
>sp|Q9Y3Z3|SAMH1_HUMAN SAM domain and HD domain-containing protein 1 OS=Homo sapiens GN=SAMHD1 PE=1 SV=2 Back     alignment and function description
>sp|Q0VCA5|SAMH1_BOVIN SAM domain and HD domain-containing protein 1 OS=Bos taurus GN=SAMHD1 PE=2 SV=1 Back     alignment and function description
>sp|Q6INN8|SAMH1_XENLA SAM domain and HD domain-containing protein 1 OS=Xenopus laevis GN=samhd1 PE=2 SV=2 Back     alignment and function description
>sp|B0G107|SAMH1_DICDI Protein SAMHD1 homolog OS=Dictyostelium discoideum GN=DDB_G0272484 PE=3 SV=1 Back     alignment and function description
>sp|Q09374|YS48_CAEEL Uncharacterized protein ZK177.8 OS=Caenorhabditis elegans GN=ZK177.8 PE=4 SV=2 Back     alignment and function description
>sp|Q58554|Y1154_METJA Uncharacterized protein MJ1154 OS=Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) GN=MJ1154 PE=4 SV=1 Back     alignment and function description
>sp|Q5UQ48|YL394_MIMIV Putative HD domain-containing protein L394 OS=Acanthamoeba polyphaga mimivirus GN=MIMI_L394 PE=4 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query178
297801556 473 metal-dependent phosphohydrolase HD doma 0.977 0.367 0.738 3e-75
449446654 471 PREDICTED: protein SAMHD1 homolog [Cucum 0.971 0.367 0.789 4e-74
255552596 421 catalytic, putative [Ricinus communis] g 0.971 0.410 0.761 7e-74
449528138 405 PREDICTED: protein SAMHD1 homolog, parti 0.971 0.427 0.789 7e-74
18421967 473 metal-dependent phosphohydrolase HD doma 0.977 0.367 0.721 2e-73
224103039 477 predicted protein [Populus trichocarpa] 0.955 0.356 0.743 3e-73
270342093 438 putative metal-dependent phosphohydrolas 0.971 0.394 0.738 5e-73
10177516 407 unnamed protein product [Arabidopsis tha 0.938 0.410 0.715 4e-72
15242638 448 metal-dependent phosphohydrolase HD doma 0.938 0.372 0.715 5e-72
225452480 467 PREDICTED: protein SAMHD1 homolog [Vitis 0.955 0.364 0.761 3e-71
>gi|297801556|ref|XP_002868662.1| metal-dependent phosphohydrolase HD domain-containing protein [Arabidopsis lyrata subsp. lyrata] gi|297314498|gb|EFH44921.1| metal-dependent phosphohydrolase HD domain-containing protein [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
 Score =  286 bits (731), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 130/176 (73%), Positives = 156/176 (88%), Gaps = 2/176 (1%)

Query: 1   MGAFFNEELSFPPVHANFASSQEQLIRFSKNVHDNVHGNIYLDPLALKFIDTEQFQRLRD 60
           MGA+ NE+LS  PV +  A + E  +RFSK+V+DNVHGNIYLDPL LKFIDTEQFQRLR+
Sbjct: 1   MGAYCNEDLSSLPVFSAGAPANE--LRFSKHVYDNVHGNIYLDPLCLKFIDTEQFQRLRE 58

Query: 61  LKQLGVTHLVYPGAVHSRFEHSLGVYWLAGAAIQKLKQNQGLELGIDNFDIQTVKLAGLL 120
           LKQLGVT++VYPGAVHSRFEHSLGVYWLAG  +Q+LK  QG+ELGIDN D+QTV+LAGLL
Sbjct: 59  LKQLGVTNMVYPGAVHSRFEHSLGVYWLAGETVQRLKSFQGMELGIDNHDLQTVRLAGLL 118

Query: 121 HDVGHGPFSHLFEREFLPRVVSGCKWSHEQMSLKMVDHIVDEHHIDLDFEMIKKVK 176
           HD+GHGPFSH+FEREFLP+V+SGC+WSHE MS+ M+DHIVD HHID+D +M+K+VK
Sbjct: 119 HDIGHGPFSHMFEREFLPKVISGCRWSHESMSVNMIDHIVDTHHIDIDAQMLKRVK 174

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|449446654|ref|XP_004141086.1| PREDICTED: protein SAMHD1 homolog [Cucumis sativus] Back     alignment and taxonomy information
>gi|255552596|ref|XP_002517341.1| catalytic, putative [Ricinus communis] gi|223543352|gb|EEF44883.1| catalytic, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|449528138|ref|XP_004171063.1| PREDICTED: protein SAMHD1 homolog, partial [Cucumis sativus] Back     alignment and taxonomy information
>gi|18421967|ref|NP_568580.1| metal-dependent phosphohydrolase HD domain-containing protein [Arabidopsis thaliana] gi|14488069|gb|AAK63855.1|AF389282_1 AT5g40270/MSN9_170 [Arabidopsis thaliana] gi|10177514|dbj|BAB10908.1| unnamed protein product [Arabidopsis thaliana] gi|20908076|gb|AAM26721.1| AT5g40270/MSN9_170 [Arabidopsis thaliana] gi|332007145|gb|AED94528.1| metal-dependent phosphohydrolase HD domain-containing protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|224103039|ref|XP_002312899.1| predicted protein [Populus trichocarpa] gi|222849307|gb|EEE86854.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|270342093|gb|ACZ74676.1| putative metal-dependent phosphohydrolase [Phaseolus vulgaris] Back     alignment and taxonomy information
>gi|10177516|dbj|BAB10910.1| unnamed protein product [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|15242638|ref|NP_198845.1| metal-dependent phosphohydrolase HD domain-containing protein [Arabidopsis thaliana] gi|332007147|gb|AED94530.1| metal-dependent phosphohydrolase HD domain-containing protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|225452480|ref|XP_002278629.1| PREDICTED: protein SAMHD1 homolog [Vitis vinifera] gi|296087679|emb|CBI34935.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query178
TAIR|locus:2173797 473 AT5G40270 [Arabidopsis thalian 0.977 0.367 0.721 2.4e-69
TAIR|locus:2173807 448 AT5G40290 [Arabidopsis thalian 0.932 0.370 0.734 7.2e-68
ZFIN|ZDB-GENE-090313-386 622 samhd1 "SAM domain and HD doma 0.764 0.218 0.525 5.9e-34
UNIPROTKB|Q5ZJL9 614 SAMHD1 "SAM domain and HD doma 0.764 0.221 0.503 1.2e-33
UNIPROTKB|F1P0T3 618 SAMHD1 "SAM domain and HD doma 0.764 0.220 0.503 1.2e-33
UNIPROTKB|F1SEM6237 F1SEM6 "Uncharacterized protei 0.747 0.561 0.507 3.2e-33
UNIPROTKB|E2QTR2 627 SAMHD1 "Uncharacterized protei 0.747 0.212 0.5 4.7e-33
MGI|MGI:1927468 627 Samhd1 "SAM domain and HD doma 0.814 0.231 0.496 4.7e-33
UNIPROTKB|I3LSQ7 511 LOC100625064 "Uncharacterized 0.735 0.256 0.507 5.2e-33
UNIPROTKB|G3X7R1 491 SAMHD1 "SAM domain and HD doma 0.747 0.270 0.5 1.1e-32
TAIR|locus:2173797 AT5G40270 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 703 (252.5 bits), Expect = 2.4e-69, P = 2.4e-69
 Identities = 127/176 (72%), Positives = 155/176 (88%)

Query:     1 MGAFFNEELSFPPVHANFASSQEQLIRFSKNVHDNVHGNIYLDPLALKFIDTEQFQRLRD 60
             MGA+ +E LS  PV ++ A + E  +RFSK+V+DNVHGNIYLDPL LKFIDTEQFQRLR+
Sbjct:     1 MGAYCDENLSSLPVFSSGAPANE--LRFSKHVYDNVHGNIYLDPLCLKFIDTEQFQRLRE 58

Query:    61 LKQLGVTHLVYPGAVHSRFEHSLGVYWLAGAAIQKLKQNQGLELGIDNFDIQTVKLAGLL 120
             LKQLGVT++VYPGAVHSRFEHSLGVYWLAG   Q+LK  QG+ELGIDN+D+QTV+LAGLL
Sbjct:    59 LKQLGVTNMVYPGAVHSRFEHSLGVYWLAGETAQRLKNFQGMELGIDNYDLQTVRLAGLL 118

Query:   121 HDVGHGPFSHLFEREFLPRVVSGCKWSHEQMSLKMVDHIVDEHHIDLDFEMIKKVK 176
             HD+GHGPFSH+FEREFLP+V+S C+WSHE MS+ M+DH+VD HHID+D +M+K+VK
Sbjct:   119 HDIGHGPFSHMFEREFLPKVISDCQWSHELMSVNMIDHMVDTHHIDIDAQMLKRVK 174
GO:0003824 "catalytic activity" evidence=IEA;ISS
GO:0005634 "nucleus" evidence=ISM
GO:0008081 "phosphoric diester hydrolase activity" evidence=IEA
GO:0046872 "metal ion binding" evidence=IEA
TAIR|locus:2173807 AT5G40290 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-090313-386 samhd1 "SAM domain and HD domain 1" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|Q5ZJL9 SAMHD1 "SAM domain and HD domain-containing protein 1" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|F1P0T3 SAMHD1 "SAM domain and HD domain-containing protein 1" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|F1SEM6 F1SEM6 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|E2QTR2 SAMHD1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
MGI|MGI:1927468 Samhd1 "SAM domain and HD domain, 1" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|I3LSQ7 LOC100625064 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|G3X7R1 SAMHD1 "SAM domain and HD domain-containing protein 1" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query178
COG1078 421 COG1078, COG1078, HD superfamily phosphohydrolases 4e-43
cd00077145 cd00077, HDc, Metal dependent phosphohydrolases wi 4e-10
pfam01966111 pfam01966, HD, HD domain 3e-07
smart00471124 smart00471, HDc, Metal dependent phosphohydrolases 2e-06
PRK04926 503 PRK04926, dgt, deoxyguanosinetriphosphate triphosp 3e-04
TIGR01353 381 TIGR01353, dGTP_triPase, deoxyguanosinetriphosphat 0.003
>gnl|CDD|224004 COG1078, COG1078, HD superfamily phosphohydrolases [General function prediction only] Back     alignment and domain information 
 Score =  147 bits (374), Expect = 4e-43
 Identities = 61/107 (57%), Positives = 75/107 (70%), Gaps = 2/107 (1%)

Query: 28  FSKNVHDNVHGNIYLDPLALKFIDTEQFQRLRDLKQLGVTHLVYPGAVHSRFEHSLGVYW 87
             K + D VHG I LD L L+ IDT +FQRLR +KQLG+ +LVYPGA H+RFEHSLGVY 
Sbjct: 2   MEKVIKDPVHGYIELDELILELIDTPEFQRLRRIKQLGLAYLVYPGANHTRFEHSLGVYH 61

Query: 88  LAGAAIQKLKQNQGLELGIDNFDIQTVKLAGLLHDVGHGPFSHLFER 134
           LA   ++ L++N   E  ID  +   V+LA LLHD+GHGPFSH FE 
Sbjct: 62  LARRLLEHLEKNSEEE--IDEEERLLVRLAALLHDIGHGPFSHTFEY 106

Length = 421
>gnl|CDD|238032 cd00077, HDc, Metal dependent phosphohydrolases with conserved 'HD' motif Back     alignment and domain information
>gnl|CDD|216815 pfam01966, HD, HD domain Back     alignment and domain information
>gnl|CDD|214679 smart00471, HDc, Metal dependent phosphohydrolases with conserved 'HD' motif Back     alignment and domain information
>gnl|CDD|235320 PRK04926, dgt, deoxyguanosinetriphosphate triphosphohydrolase; Provisional Back     alignment and domain information
>gnl|CDD|233370 TIGR01353, dGTP_triPase, deoxyguanosinetriphosphate triphosphohydrolase, putative Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 178
KOG2681 498 consensus Metal-dependent phosphohydrolase [Functi 100.0
COG1078 421 HD superfamily phosphohydrolases [General function 100.0
PRK01286 336 deoxyguanosinetriphosphate triphosphohydrolase-lik 99.95
TIGR01353 381 dGTP_triPase deoxyguanosinetriphosphate triphospho 99.94
PRK05318 432 deoxyguanosinetriphosphate triphosphohydrolase-lik 99.92
PRK01096 440 deoxyguanosinetriphosphate triphosphohydrolase-lik 99.91
PRK03007 428 deoxyguanosinetriphosphate triphosphohydrolase-lik 99.9
PRK04926 503 dgt deoxyguanosinetriphosphate triphosphohydrolase 99.88
COG0232 412 Dgt dGTP triphosphohydrolase [Nucleotide transport 99.84
PF01966122 HD: HD domain; InterPro: IPR006674 This domain is 99.14
cd00077145 HDc Metal dependent phosphohydrolases with conserv 98.88
TIGR00488158 putative HD superfamily hydrolase of NAD metabolis 98.53
smart00471124 HDc Metal dependent phosphohydrolases with conserv 98.49
TIGR03401228 cyanamide_fam HD domain protein, cyanamide hydrata 98.43
COG1418 222 Predicted HD superfamily hydrolase [General functi 98.39
COG1713187 Predicted HD superfamily hydrolase involved in NAD 98.23
TIGR00295164 conserved hypothetical protein TIGR00295. This set 98.22
PRK10119 231 putative hydrolase; Provisional 98.13
TIGR03276179 Phn-HD phosphonate degradation operons associated 98.11
PRK00227 693 glnD PII uridylyl-transferase; Provisional 98.07
TIGR01596177 cas3_HD CRISPR-associated endonuclease Cas3-HD. CR 97.96
PRK13480314 3'-5' exoribonuclease YhaM; Provisional 97.91
PRK05007 884 PII uridylyl-transferase; Provisional 97.9
PRK12703339 tRNA 2'-O-methylase; Reviewed 97.88
PRK07152342 nadD putative nicotinate-nucleotide adenylyltransf 97.88
PRK04374 869 PII uridylyl-transferase; Provisional 97.88
PRK03381 774 PII uridylyl-transferase; Provisional 97.88
PRK05092 931 PII uridylyl-transferase; Provisional 97.84
TIGR0027780 HDIG uncharacterized domain HDIG. This domain is f 97.81
PRK00275 895 glnD PII uridylyl-transferase; Provisional 97.81
PRK03059 856 PII uridylyl-transferase; Provisional 97.79
PRK00106 535 hypothetical protein; Provisional 97.74
PRK10885 409 cca multifunctional tRNA nucleotidyl transferase/2 97.74
PRK01759 854 glnD PII uridylyl-transferase; Provisional 97.72
TIGR01693 850 UTase_glnD [Protein-PII] uridylyltransferase. This 97.72
PRK12705 508 hypothetical protein; Provisional 97.51
TIGR03319 514 YmdA_YtgF conserved hypothetical protein YmdA/YtgF 97.47
TIGR02692 466 tRNA_CCA_actino tRNA adenylyltransferase. The enzy 97.46
PRK12704 520 phosphodiesterase; Provisional 97.43
COG2844 867 GlnD UTP:GlnB (protein PII) uridylyltransferase [P 97.39
COG4341186 Predicted HD phosphohydrolase [General function pr 97.37
PRK13298 417 tRNA CCA-pyrophosphorylase; Provisional 97.35
PF00233 237 PDEase_I: 3'5'-cyclic nucleotide phosphodiesterase 97.34
COG2206 344 c-di-GMP phosphodiesterase class II (HD-GYP domain 97.34
TIGR03760218 ICE_TraI_Pfluor integrating conjugative element re 96.99
COG1480 700 Predicted membrane-associated HD superfamily hydro 96.96
COG3294 269 HD supefamily hydrolase [General function predicti 96.47
COG3437360 Response regulator containing a CheY-like receiver 96.08
COG1896193 Predicted hydrolases of HD superfamily [General fu 95.61
PRK11031496 guanosine pentaphosphate phosphohydrolase; Provisi 95.52
KOG3689 707 consensus Cyclic nucleotide phosphodiesterase [Sig 95.39
PRK10854513 exopolyphosphatase; Provisional 95.36
TIGR02621844 cas3_GSU0051 CRISPR-associated helicase Cas3, Anae 94.21
PF08668196 HDOD: HDOD domain; InterPro: IPR013976 This domain 94.01
COG1639289 Predicted signal transduction protein [Signal tran 92.91
PF07514 327 TraI_2: Putative helicase; InterPro: IPR011119 The 91.94
TIGR02562 1110 cas3_yersinia CRISPR-associated helicase Cas3. The 89.81
COG3481287 Predicted HD-superfamily hydrolase [General functi 89.69
COG2254 230 Predicted HD superfamily hydrolase, possibly a nuc 89.38
PF13023165 HD_3: HD domain; PDB: 1XX7_D 2GZ4_B 4DMB_B. 88.21
PRK03826195 5'-nucleotidase; Provisional 86.98
PF12917215 HD_2: HD containing hydrolase-like enzyme ; PDB: 3 85.55
COG2316212 Predicted hydrolase (HD superfamily) [General func 85.4
COG0248492 GppA Exopolyphosphatase [Nucleotide transport and 80.6
PRK09694 878 helicase Cas3; Provisional 80.53
>KOG2681 consensus Metal-dependent phosphohydrolase [Function unknown] Back     alignment and domain information 
Probab=100.00  E-value=2e-44  Score=322.70  Aligned_cols=155  Identities=55%  Similarity=0.854  Sum_probs=147.9

Q ss_pred             hhhhhhccccccCCCCcceecChhHHHHhcCHHHHhHHhHhhhcccceecCCCCccccchHHHHHHHHHHHHHHHHHccC
Q 030373           22 QEQLIRFSKNVHDNVHGNIYLDPLALKFIDTEQFQRLRDLKQLGVTHLVYPGAVHSRFEHSLGVYWLAGAAIQKLKQNQG  101 (178)
Q Consensus        22 ~~~~~~~~k~i~Dpv~g~i~~~~~~~~IIdt~~fqRLr~I~Qlg~~~~vyp~a~htRf~HSLGV~~la~~i~~~l~~~~~  101 (178)
                      -++.....+.|+|+|||.|++++.+.+||+||+|||||+++|||..++|||||+||||+|||||+.+|+..++.|+++++
T Consensus        18 ~~~~~~~~~ii~d~vhg~i~l~pli~~lidt~~FqRLr~vkQlGl~~~vyp~A~HsRfeHsLG~~~lA~~~v~~L~~~q~   97 (498)
T KOG2681|consen   18 SRQILDPSKIINDNVHGEIELPPLIIKLIDTPLFQRLRHVKQLGLRYLVYPGANHSRFEHSLGTYTLAGILVNALNKNQC   97 (498)
T ss_pred             ccccCCHHHhhccccCceecCChHHHHHhccHHHHHHHHHHHhCceeeeccCCccchhhhhhhhHHHHHHHHHHHhhcCC
Confidence            34556778999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCCCCHHHHHHHHHHHHhhhcCCCCCCchhhhhhhhhccCCCCccHHHHHHHHHHHHHHhCCCC--------CChhhhh
Q 030373          102 LELGIDNFDIQTVKLAGLLHDVGHGPFSHLFEREFLPRVVSGCKWSHEQMSLKMVDHIVDEHHID--------LDFEMIK  173 (178)
Q Consensus       102 ~~~~i~~~d~~~v~iAALlHDiGh~PfsH~~E~~~~~~~~~~~~~~HE~~s~~ii~~il~~~g~~--------~~~~~I~  173 (178)
                      .|++|++.|..++++||||||||||||||.||..|.+.+.++..|.||++|..|++++.++.++.        ++.++++
T Consensus        98 ~El~It~~d~~~vqvA~LLHDIGHGPfSHmFe~~f~~~v~s~~e~~HE~~si~~i~~i~~~~~i~~~~~~~~~~~~~~~~  177 (498)
T KOG2681|consen   98 PELCITEVDLQAVQVAALLHDIGHGPFSHLFEGEFTPMVRSGPEFYHEDMSIDMIKKISNEMQIKRIARCLLNIDHQDAD  177 (498)
T ss_pred             CCCCCCHHHHHHHHHHHHHhhcCCCchhhhhhheecccccCCcccchhhhHHHHHHHHhhhhhhhhHHHhhcCCCHHHHH
Confidence            99999999999999999999999999999999999998888999999999999999999998877        8889998


Q ss_pred             hcc
Q 030373          174 KVK  176 (178)
Q Consensus       174 ~I~  176 (178)
                      .||
T Consensus       178 ~vK  180 (498)
T KOG2681|consen  178 AVK  180 (498)
T ss_pred             HHH
Confidence            887

>COG1078 HD superfamily phosphohydrolases [General function prediction only] Back     alignment and domain information
>PRK01286 deoxyguanosinetriphosphate triphosphohydrolase-like protein; Provisional Back     alignment and domain information
>TIGR01353 dGTP_triPase deoxyguanosinetriphosphate triphosphohydrolase, putative Back     alignment and domain information
>PRK05318 deoxyguanosinetriphosphate triphosphohydrolase-like protein; Provisional Back     alignment and domain information
>PRK01096 deoxyguanosinetriphosphate triphosphohydrolase-like protein; Provisional Back     alignment and domain information
>PRK03007 deoxyguanosinetriphosphate triphosphohydrolase-like protein; Provisional Back     alignment and domain information
>PRK04926 dgt deoxyguanosinetriphosphate triphosphohydrolase; Provisional Back     alignment and domain information
>COG0232 Dgt dGTP triphosphohydrolase [Nucleotide transport and metabolism] Back     alignment and domain information
>PF01966 HD: HD domain; InterPro: IPR006674 This domain is found in a superfamily of enzymes with a predicted or known phosphohydrolase activity [] Back     alignment and domain information
>cd00077 HDc Metal dependent phosphohydrolases with conserved 'HD' motif Back     alignment and domain information
>TIGR00488 putative HD superfamily hydrolase of NAD metabolism Back     alignment and domain information
>smart00471 HDc Metal dependent phosphohydrolases with conserved 'HD' motif Back     alignment and domain information
>TIGR03401 cyanamide_fam HD domain protein, cyanamide hydratase family Back     alignment and domain information
>COG1418 Predicted HD superfamily hydrolase [General function prediction only] Back     alignment and domain information
>COG1713 Predicted HD superfamily hydrolase involved in NAD metabolism [Coenzyme metabolism] Back     alignment and domain information
>TIGR00295 conserved hypothetical protein TIGR00295 Back     alignment and domain information
>PRK10119 putative hydrolase; Provisional Back     alignment and domain information
>TIGR03276 Phn-HD phosphonate degradation operons associated HDIG domain protein Back     alignment and domain information
>PRK00227 glnD PII uridylyl-transferase; Provisional Back     alignment and domain information
>TIGR01596 cas3_HD CRISPR-associated endonuclease Cas3-HD Back     alignment and domain information
>PRK13480 3'-5' exoribonuclease YhaM; Provisional Back     alignment and domain information
>PRK05007 PII uridylyl-transferase; Provisional Back     alignment and domain information
>PRK12703 tRNA 2'-O-methylase; Reviewed Back     alignment and domain information
>PRK07152 nadD putative nicotinate-nucleotide adenylyltransferase; Validated Back     alignment and domain information
>PRK04374 PII uridylyl-transferase; Provisional Back     alignment and domain information
>PRK03381 PII uridylyl-transferase; Provisional Back     alignment and domain information
>PRK05092 PII uridylyl-transferase; Provisional Back     alignment and domain information
>TIGR00277 HDIG uncharacterized domain HDIG Back     alignment and domain information
>PRK00275 glnD PII uridylyl-transferase; Provisional Back     alignment and domain information
>PRK03059 PII uridylyl-transferase; Provisional Back     alignment and domain information
>PRK00106 hypothetical protein; Provisional Back     alignment and domain information
>PRK10885 cca multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase; Reviewed Back     alignment and domain information
>PRK01759 glnD PII uridylyl-transferase; Provisional Back     alignment and domain information
>TIGR01693 UTase_glnD [Protein-PII] uridylyltransferase Back     alignment and domain information
>PRK12705 hypothetical protein; Provisional Back     alignment and domain information
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF Back     alignment and domain information
>TIGR02692 tRNA_CCA_actino tRNA adenylyltransferase Back     alignment and domain information
>PRK12704 phosphodiesterase; Provisional Back     alignment and domain information
>COG2844 GlnD UTP:GlnB (protein PII) uridylyltransferase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>COG4341 Predicted HD phosphohydrolase [General function prediction only] Back     alignment and domain information
>PRK13298 tRNA CCA-pyrophosphorylase; Provisional Back     alignment and domain information
>PF00233 PDEase_I: 3'5'-cyclic nucleotide phosphodiesterase; InterPro: IPR002073 The cyclic nucleotide phosphodiesterases (PDE) comprise a group of enzymes that degrade the phosphodiester bond in the second messenger molecules cAMP and cGMP Back     alignment and domain information
>COG2206 c-di-GMP phosphodiesterase class II (HD-GYP domain) [Signal transduction mechanisms] Back     alignment and domain information
>TIGR03760 ICE_TraI_Pfluor integrating conjugative element relaxase, PFL_4751 family Back     alignment and domain information
>COG1480 Predicted membrane-associated HD superfamily hydrolase [General function prediction only] Back     alignment and domain information
>COG3294 HD supefamily hydrolase [General function prediction only] Back     alignment and domain information
>COG3437 Response regulator containing a CheY-like receiver domain and an HD-GYP domain [Transcription / Signal transduction mechanisms] Back     alignment and domain information
>COG1896 Predicted hydrolases of HD superfamily [General function prediction only] Back     alignment and domain information
>PRK11031 guanosine pentaphosphate phosphohydrolase; Provisional Back     alignment and domain information
>KOG3689 consensus Cyclic nucleotide phosphodiesterase [Signal transduction mechanisms] Back     alignment and domain information
>PRK10854 exopolyphosphatase; Provisional Back     alignment and domain information
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype Back     alignment and domain information
>PF08668 HDOD: HDOD domain; InterPro: IPR013976 This domain is found in a superfamily of enzymes with a predicted or known phosphohydrolase activity Back     alignment and domain information
>COG1639 Predicted signal transduction protein [Signal transduction mechanisms] Back     alignment and domain information
>PF07514 TraI_2: Putative helicase; InterPro: IPR011119 The members of this family are restricted to the proteobacteria Back     alignment and domain information
>TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3 Back     alignment and domain information
>COG3481 Predicted HD-superfamily hydrolase [General function prediction only] Back     alignment and domain information
>COG2254 Predicted HD superfamily hydrolase, possibly a nuclease [DNA replication, recombination, and repair] Back     alignment and domain information
>PF13023 HD_3: HD domain; PDB: 1XX7_D 2GZ4_B 4DMB_B Back     alignment and domain information
>PRK03826 5'-nucleotidase; Provisional Back     alignment and domain information
>PF12917 HD_2: HD containing hydrolase-like enzyme ; PDB: 3MZO_B Back     alignment and domain information
>COG2316 Predicted hydrolase (HD superfamily) [General function prediction only] Back     alignment and domain information
>COG0248 GppA Exopolyphosphatase [Nucleotide transport and metabolism / Inorganic ion transport and metabolism] Back     alignment and domain information
>PRK09694 helicase Cas3; Provisional Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query178
3u1n_A 528 Structure Of The Catalytic Core Of Human Samhd1 Len 2e-32
2hek_A 371 Crystal Structure Of O67745, A Hypothetical Protein 2e-19
2q14_A 410 Crystal Structure Of Phosphohydrolase (Bt4208) From 1e-16
2o6i_A 480 Structure Of An Enterococcus Faecalis Hd Domain Pho 1e-16
>pdb|3U1N|A Chain A, Structure Of The Catalytic Core Of Human Samhd1 Length = 528 Back     alignment and structure 
Iteration: 1

 Score =  134 bits (338), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 66/132 (50%), Positives = 90/132 (68%), Gaps = 1/132 (0%)
Query: 34  DNVHGNIYLDPLALKFIDTEQFQRLRDLKQLGVTHLVYPGAVHSRFEHSLGVYWLAGAAI 93
           D +HG+I L PL ++ IDT QFQRLR +KQLG  + V+PGA H+RFEHSLGV +LAG  +
Sbjct: 22  DPIHGHIELHPLLVRIIDTPQFQRLRYIKQLGGGYYVFPGASHNRFEHSLGVGYLAGCLV 81
Query: 94  QKLKQNQGLELGIDNFDIQTVKLAGLLHDVGHGPFSHLFEREFLPRVVSGCKWSHEQMSL 153
             L + Q  EL I   D+  V++AGL HD+GHGPFSH F+  F+P      KW+HEQ S+
Sbjct: 82  HALGEKQP-ELQISERDVLCVQIAGLCHDLGHGPFSHXFDGRFIPLARPEVKWTHEQGSV 140
Query: 154 KMVDHIVDEHHI 165
              +H+++ + I
Sbjct: 141 XXFEHLINSNGI 152
>pdb|2HEK|A Chain A, Crystal Structure Of O67745, A Hypothetical Protein From Aquifex Aeolicus At 2.0 A Resolution. Length = 371 Back     alignment and structure
>pdb|2Q14|A Chain A, Crystal Structure Of Phosphohydrolase (Bt4208) From Bacteroides Thetaiotaomicron Vpi-5482 At 2.20 A Resolution Length = 410 Back     alignment and structure
>pdb|2O6I|A Chain A, Structure Of An Enterococcus Faecalis Hd Domain Phosphohydrolase Length = 480 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query178
3u1n_A 528 SAM domain and HD domain-containing protein 1; deo 8e-53
2q14_A 410 Phosphohydrolase; BT4208, HD domain, structural ge 2e-51
2hek_A 371 Hypothetical protein; predominantly alpha helical 3e-49
3irh_A 480 HD domain protein; phosphohydrolase, dntpase, stru 2e-47
>3u1n_A SAM domain and HD domain-containing protein 1; deoxynucleotide triphosphohydrolase, hydrolase; 3.10A {Homo sapiens} Length = 528 Back     alignment and structure
 Score =  174 bits (443), Expect = 8e-53
 Identities = 69/156 (44%), Positives = 97/156 (62%), Gaps = 1/156 (0%)

Query: 20  SSQEQLIRFSKNVHDNVHGNIYLDPLALKFIDTEQFQRLRDLKQLGVTHLVYPGAVHSRF 79
             +  L    +   D +HG+I L PL ++ IDT QFQRLR +KQLG  + V+PGA H+RF
Sbjct: 8   FEKGALEVLFQGPGDPIHGHIELHPLLVRIIDTPQFQRLRYIKQLGGGYYVFPGASHNRF 67

Query: 80  EHSLGVYWLAGAAIQKLKQNQGLELGIDNFDIQTVKLAGLLHDVGHGPFSHLFEREFLPR 139
           EHSLGV +LAG  +  L + Q  EL I   D+  V++AGL HD+GHGPFSH+F+  F+P 
Sbjct: 68  EHSLGVGYLAGCLVHALGEKQP-ELQISERDVLCVQIAGLCHDLGHGPFSHMFDGRFIPL 126

Query: 140 VVSGCKWSHEQMSLKMVDHIVDEHHIDLDFEMIKKV 175
                KW+HEQ S+ M +H+++ + I    E    +
Sbjct: 127 ARPEVKWTHEQGSVMMFEHLINSNGIKPVMEQYGLI 162
>2q14_A Phosphohydrolase; BT4208, HD domain, structural genomics, JO center for structural genomics, JCSG; HET: MSE ADP; 2.20A {Bacteroides thetaiotaomicron vpi-5482} Length = 410 Back     alignment and structure
>2hek_A Hypothetical protein; predominantly alpha helical protein with GDP binding site AN site being FAR from EACH other, structural genomics, PSI; HET: GDP; 2.00A {Aquifex aeolicus} SCOP: a.211.1.1 Length = 371 Back     alignment and structure
>3irh_A HD domain protein; phosphohydrolase, dntpase, structural genomics, P protein structure initiative, midwest center for structural genomics; HET: DGT DTP; 2.40A {Enterococcus faecalis} PDB: 2o6i_A* Length = 480 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query178
3u1n_A 528 SAM domain and HD domain-containing protein 1; deo 100.0
3irh_A 480 HD domain protein; phosphohydrolase, dntpase, stru 100.0
2q14_A 410 Phosphohydrolase; BT4208, HD domain, structural ge 100.0
2hek_A 371 Hypothetical protein; predominantly alpha helical 100.0
2pgs_A 451 Putative deoxyguanosinetriphosphate triphosphohyd; 99.96
3bg2_A 444 DGTP triphosphohydrolase; structural genomics, NYS 99.96
2dqb_A 376 Deoxyguanosinetriphosphate triphosphohydrolase, P; 99.94
3b57_A 209 LIN1889 protein; Q92AN1, X-RAY, NESG, structural g 98.61
2pq7_A 220 Predicted HD superfamily hydrolase; 104161995, HD 98.56
3dto_A 223 BH2835 protein; all alpha-helical protein, structu 98.51
3gw7_A 239 Uncharacterized protein YEDJ; all alpha-helical pr 98.42
2pjq_A 231 Uncharacterized protein LP_2664; LPR71, NESG, stru 98.4
3djb_A 223 Hydrolase, HD family; all alpha-helical protein., 98.4
2qgs_A 225 Protein Se1688; alpha-helical protein, structural 98.33
3ccg_A190 HD superfamily hydrolase; NP_347894.1, HD domain, 98.23
2o08_A188 BH1327 protein; putative HD superfamily hydrolase, 98.21
2ogi_A196 Hypothetical protein SAG1661; structural genomics, 98.01
1zkl_A 353 HCP1, TM22, high-affinity CAMP-specific 3',5'-cycl 97.77
1tbf_A 347 CGMP-specific 3',5'-cyclic phosphodiesterase; PDE5 97.62
3tm8_A328 BD1817, uncharacterized protein; HD-GYP, phosphodi 97.6
1f0j_A 377 PDE4B, phosphodiesterase 4B; PDE phosphodiesterase 97.56
1taz_A 365 Calcium/calmodulin-dependent 3',5'-cyclic nucleot 97.51
1y2k_A 349 DPDE3, PDE43, CAMP-specific 3',5'-cyclic phosphodi 97.48
2our_A 331 CAMP and CAMP-inhibited CGMP 3',5'-cyclic phosphod 97.32
2r8q_A 359 Class I phosphodiesterase PDEB1; leishimaniasis, p 97.26
3i7a_A281 Putative metal-dependent phosphohydrolase; YP_9268 97.24
3hc1_A305 Uncharacterized HDOD domain protein; HDOD domain p 97.2
3bjc_A 878 CGMP-specific 3',5'-cyclic phosphodiesterase; PDE5 97.12
3sk9_A 265 Putative uncharacterized protein TTHB187; crispr, 97.11
3v93_A 345 Cyclic nucleotide specific phosphodiesterase; para 96.98
3itu_A 345 CGMP-dependent 3',5'-cyclic phosphodiesterase; Zn- 96.97
3ljx_A288 MMOQ response regulator; structural genomics, PSI- 96.96
3ecm_A 338 High affinity CAMP-specific and IBMX-insensitive 3 96.94
3g4g_A 421 DPDE3, PDE43, CAMP-specific 3',5'-cyclic phosphodi 96.66
3dyn_A 329 High affinity CGMP-specific 3',5'-cyclic phosphod 96.66
3m5f_A 244 Metal dependent phosphohydrolase; CAS3, prokaryoti 96.63
3qi3_A 533 High affinity CGMP-specific 3',5'-cyclic phosphod 96.59
3ibj_A 691 CGMP-dependent 3',5'-cyclic phosphodiesterase; PDE 96.52
3rf0_A209 Exopolyphosphatase; structural genomics, center fo 96.51
3m1t_A275 Putative phosphohydrolase; structural genomics, jo 96.45
3hr1_A 380 CAMP and CAMP-inhibited CGMP 3',5'-cyclic phosphod 96.45
1vqr_A297 Hypothetical protein CJ0248; HD-domain/pdease-like 96.39
3mem_A457 Putative signal transduction protein; structural g 96.27
3kq5_A 393 Hypothetical cytosolic protein; structural genomic 96.27
1so2_A 420 CGMP-inhibited 3',5'-cyclic phosphodiesterase B; P 95.36
2paq_A201 5'-deoxynucleotidase YFBR; HD domain phosphoh stru 94.76
2ibn_A 250 Inositol oxygenase; reductase, DIIRON, structural 94.51
2cqz_A177 177AA long hypothetical protein; hypothetical prot 94.44
1u6z_A513 Exopolyphosphatase; alpha/beta protein, askha (ace 94.08
1ynb_A173 Hypothetical protein AF1432; structural genomics, 93.27
3hi0_A508 Putative exopolyphosphatase; 17739545, structural 93.22
3aql_A415 Poly(A) polymerase; transferase/RNA, ATP-binding, 92.87
1xx7_A184 Oxetanocin-like protein; PSI, secsg, protein struc 89.51
1vfg_A390 A-adding enzyme, poly A polymerase; transferase, R 87.6
3mzo_A216 LIN2634 protein; HD-domain phosphohydrolase, struc 84.0
>3u1n_A SAM domain and HD domain-containing protein 1; deoxynucleotide triphosphohydrolase, hydrolase; 3.10A {Homo sapiens} Back     alignment and structure
Probab=100.00  E-value=3.4e-41  Score=309.40  Aligned_cols=134  Identities=49%  Similarity=0.848  Sum_probs=119.4

Q ss_pred             cccccCCCCcceecChhHHHHhcCHHHHhHHhHhhhcccceecCCCCccccchHHHHHHHHHHHHHHHHHccCccCCCCH
Q 030373           29 SKNVHDNVHGNIYLDPLALKFIDTEQFQRLRDLKQLGVTHLVYPGAVHSRFEHSLGVYWLAGAAIQKLKQNQGLELGIDN  108 (178)
Q Consensus        29 ~k~i~Dpv~g~i~~~~~~~~IIdt~~fqRLr~I~Qlg~~~~vyp~a~htRf~HSLGV~~la~~i~~~l~~~~~~~~~i~~  108 (178)
                      .+.++|||||+|++++.+.+||+||+|||||+|+|+|.+++|||||+||||+|||||+++|+++++.|..++ +++++++
T Consensus        17 ~~~~~Dpvhg~I~l~~~~~riI~s~~FqRLr~i~Qlg~~~~v~pga~hTRf~HSLgV~~la~~i~~~l~~~~-~~~~~~~   95 (528)
T 3u1n_A           17 FQGPGDPIHGHIELHPLLVRIIDTPQFQRLRYIKQLGGGYYVFPGASHNRFEHSLGVGYLAGCLVHALGEKQ-PELQISE   95 (528)
T ss_dssp             ---CCBTTTBSCCCCHHHHHHHSSHHHHGGGGSBTTGGGTTTCTTCCCBHHHHHHHHHHHHHHHHHHHHHHC-GGGCCCH
T ss_pred             cccccCCCCcCEEeCHHHHHHhCCHHHhhccCccccCCcccccCCCCcCHHHHHHHHHHHHHHHHHHHHhhC-cccCCCH
Confidence            456899999999999999999999999999999999999999999999999999999999999999998765 3567888


Q ss_pred             HHHHHHHHHHHhhhcCCCCCCchhhhhhhhhccCCCCccHHHHHHHHHHHHHHhC
Q 030373          109 FDIQTVKLAGLLHDVGHGPFSHLFEREFLPRVVSGCKWSHEQMSLKMVDHIVDEH  163 (178)
Q Consensus       109 ~d~~~v~iAALlHDiGh~PfsH~~E~~~~~~~~~~~~~~HE~~s~~ii~~il~~~  163 (178)
                      .|..++++|||||||||+||||++|.+|.+...++.+|+||++|.+|++.+++++
T Consensus        96 ~d~~~v~~AaLlHDiGH~PFsH~~E~~~~~~~~~~~~~~HE~~S~~i~~~li~~~  150 (528)
T 3u1n_A           96 RDVLCVQIAGLCHDLGHGPFSHMFDGRFIPLARPEVKWTHEQGSVMMFEHLINSN  150 (528)
T ss_dssp             HHHHHHHHHHHHTTTTCBTTBHHHHHTHHHHHCTTSCCCHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHhccCCCCccchhhhhhhhhhcCCCCCCHHHHHHHHHHHHhccc
Confidence            8899999999999999999999999988765445568999999999987765443
>3irh_A HD domain protein; phosphohydrolase, dntpase, structural genomics, P protein structure initiative, midwest center for structural genomics; HET: DGT DTP; 2.40A {Enterococcus faecalis} PDB: 2o6i_A* Back     alignment and structure
>2q14_A Phosphohydrolase; BT4208, HD domain, structural genomics, JO center for structural genomics, JCSG; HET: MSE ADP; 2.20A {Bacteroides thetaiotaomicron vpi-5482} Back     alignment and structure
>2hek_A Hypothetical protein; predominantly alpha helical protein with GDP binding site AN site being FAR from EACH other, structural genomics, PSI; HET: GDP; 2.00A {Aquifex aeolicus} SCOP: a.211.1.1 Back     alignment and structure
>2pgs_A Putative deoxyguanosinetriphosphate triphosphohyd; deoxyguanosinetriphosphate triphsphohydrolase, pseudomonas S PV. phaseolicola 1448A; 2.35A {Pseudomonas syringae PV} Back     alignment and structure
>3bg2_A DGTP triphosphohydrolase; structural genomics, NYSGXRC, target 10395N, triphosphohydro PSI-2, protein structure initiative; 1.95A {Leeuwenhoekiella blandensis} Back     alignment and structure
>2dqb_A Deoxyguanosinetriphosphate triphosphohydrolase, P; dntpase, DNTP, single-stranded DNA, DNA dGTPase, HD superfamily, structural genomics; 2.20A {Thermus thermophilus} Back     alignment and structure
>3b57_A LIN1889 protein; Q92AN1, X-RAY, NESG, structural genomics, PSI-2, protein structure initiative; 3.00A {Listeria innocua CLIP11262} SCOP: a.211.1.1 Back     alignment and structure
>2pq7_A Predicted HD superfamily hydrolase; 104161995, HD domain, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.45A {Uncultured thermotogales bacterium} SCOP: a.211.1.1 Back     alignment and structure
>3dto_A BH2835 protein; all alpha-helical protein, structural genomics, PSI-2, protein structure initiative; 3.30A {Bacillus halodurans} SCOP: a.211.1.1 Back     alignment and structure
>3gw7_A Uncharacterized protein YEDJ; all alpha-helical protein, structural genomics, PSI-2, protein structure initiative; 3.30A {Escherichia coli k-12} Back     alignment and structure
>2pjq_A Uncharacterized protein LP_2664; LPR71, NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Lactobacillus plantarum WCFS1} SCOP: a.211.1.1 Back     alignment and structure
>3djb_A Hydrolase, HD family; all alpha-helical protein., structural genomics, PSI-2, protein structure initiative; 2.90A {Bacillus thuringiensis serovarkonkukian} SCOP: a.211.1.1 Back     alignment and structure
>2qgs_A Protein Se1688; alpha-helical protein, structural genomics, PSI-2, protein S initiative, northeast structural genomics consortium; 2.00A {Staphylococcus epidermidis} SCOP: a.211.1.1 Back     alignment and structure
>3ccg_A HD superfamily hydrolase; NP_347894.1, HD domain, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.50A {Clostridium acetobutylicum atcc 824} Back     alignment and structure
>2o08_A BH1327 protein; putative HD superfamily hydrolase, structural genomics, JOIN for structural genomics, JCSG; HET: UNL PG4 DGI; 1.90A {Bacillus halodurans} Back     alignment and structure
>2ogi_A Hypothetical protein SAG1661; structural genomics, joint center for structural genomics, J protein structure initiative; HET: GDP MES; 1.85A {Streptococcus agalactiae serogroup V} Back     alignment and structure
>1zkl_A HCP1, TM22, high-affinity CAMP-specific 3',5'-cyclic phosphodiesterase 7A; PDE, hydrolase; HET: IBM; 1.67A {Homo sapiens} PDB: 3g3n_A* Back     alignment and structure
>1tbf_A CGMP-specific 3',5'-cyclic phosphodiesterase; PDE5A, hydrolase; HET: VIA; 1.30A {Homo sapiens} SCOP: a.211.1.2 PDB: 1t9s_A* 1xoz_A* 1xp0_A* 2chm_A* 3tge_A* 3tgg_A* 3hc8_A* 3hdz_A* 1t9r_A* 3sie_A* 3shy_A* 3shz_A* 3b2r_A* 2h44_A* 2h42_A* 2h40_A* 1rkp_A* 1udt_A* 1udu_A* 1uho_A* ... Back     alignment and structure
>3tm8_A BD1817, uncharacterized protein; HD-GYP, phosphodiesterase, unknown function, hydrolase,signa protein; 1.28A {Bdellovibrio bacteriovorus} PDB: 3tmb_A 3tmc_A 3tmd_A Back     alignment and structure
>1f0j_A PDE4B, phosphodiesterase 4B; PDE phosphodiesterase, hydrolase; 1.77A {Homo sapiens} SCOP: a.211.1.2 PDB: 1ro6_A* 1ro9_A* 1ror_A* 3hmv_A* 1tb5_A* 1xm6_A* 1xlx_A* 1xm4_A* 1xlz_A* 1xmu_A* 1xmy_A* 1xn0_A* 1xos_A* 1xot_B* 1y2h_A* 1y2j_A* 3kkt_A* 3g4i_A* 3g4k_A* 3g4l_A* ... Back     alignment and structure
>1taz_A Calcium/calmodulin-dependent 3',5'-cyclic nucleot phosphodiesterase 1B; PDE1B, hydrolase; HET: CME; 1.77A {Homo sapiens} SCOP: a.211.1.2 Back     alignment and structure
>1y2k_A DPDE3, PDE43, CAMP-specific 3',5'-cyclic phosphodiesterase 4D; PDE4D, pyrazole, hydrolase; HET: 7DE; 1.36A {Homo sapiens} SCOP: a.211.1.2 PDB: 1xon_A* 1xoq_A* 1xom_A* 1xor_A* 1y2c_A* 1y2d_A* 1y2e_A* 1y2b_A* 3iak_A* 3k4s_A* 1tbb_A* 1tb7_A* 3sl5_A* 3sl4_A* 2fm5_A* 3sl3_A* 2fm0_A* 3sl6_A* 3sl8_A* 1oyn_A* ... Back     alignment and structure
>2our_A CAMP and CAMP-inhibited CGMP 3',5'-cyclic phosphodiesterase 10A; PDE10, substrate specificity, hydrolase; HET: CMP; 1.45A {Homo sapiens} PDB: 2ous_A 2ouu_A* 3sn7_A* 3sni_A* 3snl_A* 4dff_A* 2wey_A* 2oun_A* 2oup_A 2ouq_A* 2ouv_A 2ouy_A* 4ael_A* 2y0j_A* 4ddl_A* 3uuo_A* 3ui7_A* 2o8h_A* 2ovv_A* 2ovy_A* ... Back     alignment and structure
>2r8q_A Class I phosphodiesterase PDEB1; leishimaniasis, parasite inhibitor selectivity, CAMP phosphodiesterase, hydrolase; HET: IBM; 1.50A {Leishmania major} Back     alignment and structure
>3i7a_A Putative metal-dependent phosphohydrolase; YP_926882.1, STRU genomics, joint center for structural genomics, JCSG; 2.06A {Shewanella amazonensis SB2B} Back     alignment and structure
>3hc1_A Uncharacterized HDOD domain protein; HDOD domain protein with unknown function, STRU genomics, joint center for structural genomics; 1.90A {Geobacter sulfurreducens} Back     alignment and structure
>3bjc_A CGMP-specific 3',5'-cyclic phosphodiesterase; PDE5, erectIle dysfunction, inhibitor design, allosteric enzyme, alternative splicing, CGMP binding; HET: WAN; 2.00A {Homo sapiens} SCOP: a.211.1.2 PDB: 3mf0_A 3lfv_A 2xss_A 2k31_A* Back     alignment and structure
>3sk9_A Putative uncharacterized protein TTHB187; crispr, CAS, HD domain, nuclease, hydrolase; 1.80A {Thermus thermophilus HB8} PDB: 3skd_A Back     alignment and structure
>3v93_A Cyclic nucleotide specific phosphodiesterase; parasite, phosphodiesterases,, hydrolase; 2.00A {Trypanosoma cruzi} PDB: 3v94_A* Back     alignment and structure
>3itu_A CGMP-dependent 3',5'-cyclic phosphodiesterase; Zn-binding, all-alpha-helical, alternative splicing, hydrolase, membrane, polymorphism; HET: IBM; 1.58A {Homo sapiens} PDB: 3itm_A* 1z1l_A Back     alignment and structure
>3ljx_A MMOQ response regulator; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Methylococcus capsulatus} PDB: 3ljv_A 3p3q_A Back     alignment and structure
>3ecm_A High affinity CAMP-specific and IBMX-insensitive 3',5'-cyclic phosphodiesterase 8A...; phosphodiesterase 8A PDE8A inhibitor selectivity; 1.90A {Homo sapiens} SCOP: a.211.1.0 PDB: 3ecn_A* Back     alignment and structure
>3g4g_A DPDE3, PDE43, CAMP-specific 3',5'-cyclic phosphodiesterase 4D; PDE4D, UCR2, alternative splicing, cytoplasm, cytoskeleton, hydrolase, membrane; HET: D71; 2.30A {Homo sapiens} PDB: 3g45_A* Back     alignment and structure
>3dyn_A High affinity CGMP-specific 3',5'-cyclic phosphod 9A; phophodiestrase, enzyme mechanism, hydrolase, manganes binding, phosphoprotein; HET: PCG IBM; 2.10A {Homo sapiens} SCOP: a.211.1.2 PDB: 3dyl_A* 3dy8_A* 3dyq_A* 3dys_A* 3jsi_A* 3jsw_A* 2yy2_A* 2hd1_A* 3k3e_A* 3k3h_A* 4gh6_A* 3n3z_A* Back     alignment and structure
>3qi3_A High affinity CGMP-specific 3',5'-cyclic phosphod 9A; mutation, glutamine switch, hydrolase-hydrolase inhibitor CO; HET: PDB; 2.30A {Homo sapiens} PDB: 3qi4_A* Back     alignment and structure
>3ibj_A CGMP-dependent 3',5'-cyclic phosphodiesterase; PDE2A, GAF-domains, allosteric regulation hydrolase, membrane; 3.02A {Homo sapiens} Back     alignment and structure
>3rf0_A Exopolyphosphatase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta fold, hydrolase; HET: MSE; 1.80A {Yersinia pestis} Back     alignment and structure
>3m1t_A Putative phosphohydrolase; structural genomics, joint center structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE GOL; 1.62A {Shewanella amazonensis} SCOP: a.211.1.0 Back     alignment and structure
>3hr1_A CAMP and CAMP-inhibited CGMP 3',5'-cyclic phosphodiesterase 10A; PDE 10A, PDE10 inhibitors, allosteric enzyme, alternative splicing; HET: PF9; 1.53A {Rattus norvegicus} PDB: 3hqy_A* 3hqz_A* 3hqw_A* Back     alignment and structure
>1vqr_A Hypothetical protein CJ0248; HD-domain/pdease-like fold, structural genomics, joint cente structural genomics, JCSG; 2.25A {Campylobacter jejuni subsp} SCOP: a.211.1.3 Back     alignment and structure
>3mem_A Putative signal transduction protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 2.25A {Marinobacter aquaeolei} Back     alignment and structure
>3kq5_A Hypothetical cytosolic protein; structural genomics, unknown function, PSI-2, protein struct initiative; 2.00A {Coxiella burnetii} Back     alignment and structure
>1so2_A CGMP-inhibited 3',5'-cyclic phosphodiesterase B; PDE3B phosphodiesterase, hydrolase; HET: HG9 666; 2.40A {Homo sapiens} SCOP: a.211.1.2 PDB: 1soj_A* Back     alignment and structure
>2paq_A 5'-deoxynucleotidase YFBR; HD domain phosphoh structural genomics, PSI, protein structure initiative, MID center for structural genomics, MCSG; 2.10A {Escherichia coli} SCOP: a.211.1.1 PDB: 2par_A* 2pau_A* Back     alignment and structure
>2ibn_A Inositol oxygenase; reductase, DIIRON, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: MSE I1N; 1.50A {Homo sapiens} SCOP: a.211.1.4 Back     alignment and structure
>2cqz_A 177AA long hypothetical protein; hypothetical proteins, structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} Back     alignment and structure
>1u6z_A Exopolyphosphatase; alpha/beta protein, askha (acetate and sugar kinases, HSC70, superfamily; 1.90A {Escherichia coli} SCOP: a.211.1.5 c.55.1.8 c.55.1.8 PDB: 2flo_A* Back     alignment and structure
>1ynb_A Hypothetical protein AF1432; structural genomics, PSI, protein structure initiative, MIDW center for structural genomics, MCSG; 1.76A {Archaeoglobus fulgidus} SCOP: a.211.1.1 PDB: 1yoy_A Back     alignment and structure
>3hi0_A Putative exopolyphosphatase; 17739545, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 2.30A {Agrobacterium tumefaciens str} Back     alignment and structure
>3aql_A Poly(A) polymerase; transferase/RNA, ATP-binding, nucleotide-binding, RNA-bindin transferase, nucleotidyltransferase, ATP binding, A-phospho; 3.00A {Escherichia coli} PDB: 3aqn_A* 3aqk_A 3aqm_A Back     alignment and structure
>1xx7_A Oxetanocin-like protein; PSI, secsg, protein structure initiative, southeast collaboratory for structural genomics; 2.26A {Pyrococcus furiosus} SCOP: a.211.1.1 Back     alignment and structure
>1vfg_A A-adding enzyme, poly A polymerase; transferase, RNA, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: APC; 2.80A {Aquifex aeolicus} SCOP: a.173.1.1 d.218.1.4 Back     alignment and structure
>3mzo_A LIN2634 protein; HD-domain phosphohydrolase, structural genomics, joint cente structural genomics, JCSG, protein structure initiative; HET: MSE; 1.98A {Listeria innocua} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 178
d2o6ia1 453 a.211.1.1 (A:1-453) Hypothetical protein EF1143 {E 2e-44
d2heka1 369 a.211.1.1 (A:1-369) Hypothetical protein aq_1910 { 1e-37
>d2o6ia1 a.211.1.1 (A:1-453) Hypothetical protein EF1143 {Enterococcus faecalis [TaxId: 1351]} Length = 453 Back     information, alignment and structure

class: All alpha proteins
fold: HD-domain/PDEase-like
superfamily: HD-domain/PDEase-like
family: HD domain
domain: Hypothetical protein EF1143
species: Enterococcus faecalis [TaxId: 1351]

 Score =  150 bits (379), Expect = 2e-44
 Identities = 51/152 (33%), Positives = 80/152 (52%), Gaps = 13/152 (8%)

Query: 22  QEQLIRFSKNVHDNVHGNIYLD-PLALKFIDTEQFQRLRDLKQLGVTHLVYPGAVHSRFE 80
           +EQ +   K   D VH  I++   + L  I++ + QRLR +KQLG +   + GA HSRF 
Sbjct: 6   KEQRLPIEKVFRDPVHNYIHVQHQVILDLINSAEVQRLRRIKQLGTSSFTFHGAEHSRFS 65

Query: 81  HSLGVYWLAGAAIQKLKQNQGL----ELGIDNFDIQTVKLAGLLHDVGHGPFSHLFEREF 136
           HSLGVY +     +  ++N  +    E G ++ +      A LLHDVGHGP+SH FE  F
Sbjct: 66  HSLGVYEITRRICEIFQRNYSVERLGENGWNDDERLITLCAALLHDVGHGPYSHTFEHIF 125

Query: 137 LPRVVSGCKWSHEQMSLKMVDHIVDEHHIDLD 168
                     +HE ++++++     E +  L+
Sbjct: 126 --------DTNHEAITVQIITSPETEVYQILN 149
>d2heka1 a.211.1.1 (A:1-369) Hypothetical protein aq_1910 {Aquifex aeolicus [TaxId: 63363]} Length = 369 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query178
d2o6ia1 453 Hypothetical protein EF1143 {Enterococcus faecalis 100.0
d2heka1 369 Hypothetical protein aq_1910 {Aquifex aeolicus [Ta 100.0
d2pq7a1 217 Predicted hydrolase mes0020 {Uncultured thermotoga 98.6
d2qgsa1 216 Uncharacterized protein SE1688 {Staphylococcus epi 98.59
d3dtoa1 212 Uncharacterized protein BH2835 {Bacillus haloduran 98.58
d3b57a1 201 Uncharacterized protein Lin1889 {Listeria innocua 98.53
d3djba1 213 Uncharacterized protein BT9727_1981 {Bacillus thur 98.48
d2pjqa1 215 Uncharacterized protein LP2664 {Lactobacillus plan 98.17
d1tbfa_ 326 cGMP-specific 3',5'-cyclic phosphodiesterase pde5a 97.51
d1y2ka1 326 Catalytic domain of cyclic nucleotide phosphodiest 97.35
d3dy8a1 324 High-affinity cGMP-specific 3',5'-cyclic phosphodi 97.34
d1u6za1197 Exopolyphosphatase Ppx C-terminal domain {Escheric 97.27
d1taza_ 357 Catalytic domain of cyclic nucleotide phosphodiest 97.24
d1so2a_ 415 cGMP-inhibited 3',5'-cyclic phosphodiesterase B, p 96.61
d1vqra_286 Hypothetical protein Cj0248 {Campylobacter jejuni 94.13
d1ynba1167 Hypothetical protein AF1432 {Archaeon Archaeoglobu 91.74
d2paqa1186 5'-nucleotidase YfbR {Escherichia coli [TaxId: 562 91.46
d1xx7a_172 Oxetanocin-like protein PF0395 {Pyrococcus furiosu 91.29
>d2o6ia1 a.211.1.1 (A:1-453) Hypothetical protein EF1143 {Enterococcus faecalis [TaxId: 1351]} Back     information, alignment and structure
class: All alpha proteins
fold: HD-domain/PDEase-like
superfamily: HD-domain/PDEase-like
family: HD domain
domain: Hypothetical protein EF1143
species: Enterococcus faecalis [TaxId: 1351]

Probab=100.00  E-value=2.1e-45  Score=329.47  Aligned_cols=133  Identities=37%  Similarity=0.617  Sum_probs=119.1

Q ss_pred             hhccccccCCCCcceecCh-hHHHHhcCHHHHhHHhHhhhcccceecCCCCccccchHHHHHHHHHHHHHHHHHccC---
Q 030373           26 IRFSKNVHDNVHGNIYLDP-LALKFIDTEQFQRLRDLKQLGVTHLVYPGAVHSRFEHSLGVYWLAGAAIQKLKQNQG---  101 (178)
Q Consensus        26 ~~~~k~i~Dpv~g~i~~~~-~~~~IIdt~~fqRLr~I~Qlg~~~~vyp~a~htRf~HSLGV~~la~~i~~~l~~~~~---  101 (178)
                      +...|.|+|||||+|++++ .+.+|||||+|||||+|+|||++++|||||+||||+|||||||+|+++++.|+++++   
T Consensus        10 ~~~~k~~~Dpihg~I~~~~~~~~~lidt~~fQRLr~I~Qlg~~~~v~pgA~HtRfeHSLGv~~la~~~~~~l~~~~~~~~   89 (453)
T d2o6ia1          10 LPIEKVFRDPVHNYIHVQHQVILDLINSAEVQRLRRIKQLGTSSFTFHGAEHSRFSHSLGVYEITRRICEIFQRNYSVER   89 (453)
T ss_dssp             EEEEEEEEETTTEEEEEEEHHHHHHHTSHHHHGGGGSBSSSGGGGTSTTCCCBHHHHHHHHHHHHHHHHHHHHHHSBHHH
T ss_pred             CCCCcEEecCCcccEEeCHHHHHHHcCCHhHhhhcccccCCCcccccCCCccCchhHHHHHHHHHHHHHHHHHhcccccc
Confidence            4567999999999999984 789999999999999999999999999999999999999999999999999987653   


Q ss_pred             -ccCCCCHHHHHHHHHHHHhhhcCCCCCCchhhhhhhhhccCCCCccHHHHHHHHHH-------HHHHhCCCC
Q 030373          102 -LELGIDNFDIQTVKLAGLLHDVGHGPFSHLFEREFLPRVVSGCKWSHEQMSLKMVD-------HIVDEHHID  166 (178)
Q Consensus       102 -~~~~i~~~d~~~v~iAALlHDiGh~PfsH~~E~~~~~~~~~~~~~~HE~~s~~ii~-------~il~~~g~~  166 (178)
                       .+.++++.+.+++++||||||||||||||++|..+        ++.||.+|.+|++       .++++++.+
T Consensus        90 ~~~~~~~~~~~~~v~~AaLlHDiGHgPfSH~~E~~~--------~~~he~~~~~i~~~~~~~~~~~l~~~~~~  154 (453)
T d2o6ia1          90 LGENGWNDDERLITLCAALLHDVGHGPYSHTFEHIF--------DTNHEAITVQIITSPETEVYQILNRVSAD  154 (453)
T ss_dssp             HGGGSBCGGGHHHHHHHHHHTTTTCCTTHHHHHHHS--------CCCHHHHHHHHHHCTTSHHHHHHHTTCTT
T ss_pred             ccccCCCHHHHHHHHHHHHHhccCcccccccccccc--------cccchHHHHHHHHhhhhhHHHHHHHhccc
Confidence             24568889999999999999999999999999864        6899999999985       456666654
>d2heka1 a.211.1.1 (A:1-369) Hypothetical protein aq_1910 {Aquifex aeolicus [TaxId: 63363]} Back     information, alignment and structure
>d2pq7a1 a.211.1.1 (A:1-217) Predicted hydrolase mes0020 {Uncultured thermotogales bacterium [TaxId: 221214]} Back     information, alignment and structure
>d2qgsa1 a.211.1.1 (A:1-216) Uncharacterized protein SE1688 {Staphylococcus epidermidis [TaxId: 1282]} Back     information, alignment and structure
>d3dtoa1 a.211.1.1 (A:2-213) Uncharacterized protein BH2835 {Bacillus halodurans [TaxId: 86665]} Back     information, alignment and structure
>d3b57a1 a.211.1.1 (A:1-201) Uncharacterized protein Lin1889 {Listeria innocua [TaxId: 1642]} Back     information, alignment and structure
>d3djba1 a.211.1.1 (A:2-214) Uncharacterized protein BT9727_1981 {Bacillus thuringiensis [TaxId: 1428]} Back     information, alignment and structure
>d2pjqa1 a.211.1.1 (A:1-215) Uncharacterized protein LP2664 {Lactobacillus plantarum [TaxId: 1590]} Back     information, alignment and structure
>d1tbfa_ a.211.1.2 (A:) cGMP-specific 3',5'-cyclic phosphodiesterase pde5a1-Ibmx {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1y2ka1 a.211.1.2 (A:86-411) Catalytic domain of cyclic nucleotide phosphodiesterase pde4d {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d3dy8a1 a.211.1.2 (A:182-505) High-affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A, PDE9A {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1u6za1 a.211.1.5 (A:313-509) Exopolyphosphatase Ppx C-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1taza_ a.211.1.2 (A:) Catalytic domain of cyclic nucleotide phosphodiesterase 1b, PDE1B {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1so2a_ a.211.1.2 (A:) cGMP-inhibited 3',5'-cyclic phosphodiesterase B, pde3b {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1vqra_ a.211.1.3 (A:) Hypothetical protein Cj0248 {Campylobacter jejuni [TaxId: 197]} Back     information, alignment and structure
>d1ynba1 a.211.1.1 (A:7-173) Hypothetical protein AF1432 {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d2paqa1 a.211.1.1 (A:2-187) 5'-nucleotidase YfbR {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1xx7a_ a.211.1.1 (A:) Oxetanocin-like protein PF0395 {Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure