Citrus Sinensis ID: 030420

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------
Protein Sequence
MATKTLISRPYIFSSSSRSLSCFFIHPKRSFVSQTRTFLNGSQAQTSSSLLSSCNSGNRTKLPIQSDGQSRFGRVGHRRFSTGATHVNDAGSIDPSRMASMENKIKEHLNAESVTVKDAYGDGRHVSIDVIASAFEGQSAVNRQRMVYKAIWEELQSTVHAVDSMTTKTPAEADVKK
Secondary Structure (PSIPRED)
ccccccccccccccccccccccEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHcccccEEEEEEccccccEEEEEEEccccccccHHHHHHHHHHHHHHHHccccccccccccccHHHHHHcc
Secondary Structure Prediction (SSPRO)
ccccEEEEccEEEEccccEEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccEcccccccccccccccccHHHHHHHHHHHHHHccccEEEEEEccccccEEEEEEEcHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHccc
Coil and Loop (DISEMBL)
matktlisrpyifssssrslscffihpkrsfvsqtrtflngsqaqtsssllsscnsgnrtklpiqsdgqsrfgrvghrrfstgathvndagsidpsrMASMENKIKEHlnaesvtvkdaygdgrhVSIDVIASAFEGQSAVNRQRMVYKAIWEELQSTVHAVdsmttktpaeadvkk
Flexible Loop (DISEMBL)
matktlisrpyifssssrslSCFFIHPKRSFVSQTRTFLNGSQAQTSSSLLSSCNSGNRTklpiqsdgqsrfgrVGHRrfstgathvndagsidpsRMASMENKIKEHLNAESVTVKDAYGDGRHVSIDVIASafegqsavNRQRMVYKAIWEELQStvhavdsmttktpaeadvkk
Low Complexity Region (SEG)
MATKTLisrpyifssssrslscffiHPKRSFVSQTRTFLNGSQAQTsssllssCNSGNRTKLPIQSDGQSRFGRVGHRRFSTGATHVNDAGSIDPSRMASMENKIKEHLNAESVTVKDAYGDGRHVSIDVIASAFEGQSAVNRQRMVYKAIWEELQSTVHAVDSMTTKTPAEADVKK
Disordered region (IsUnstruct)
*********PYIFS**SRSLSCFFIHPKRSFVSQ*******************************************************************************VTVKDAYGDGRHVSIDVIASAFEGQSAVNRQRMVYKAIWEELQSTVHA****************
Disordered Region (DISOPRED)
***KTLISRPYIFSSSSRSLSCFFIHPKRSFVSQ**************************KL******************************************IKEHLNAESVTVKDAYGDGRHVSIDVIASAFEGQSAVNRQRMVYKAIWEELQSTVHAVDSMTTKT********
Disordered Region (DISEMBL)
********RPYIFSSSSRSLSCFFIHPKRSFVSQTRTFLNG************CNSGNRTKLPIQSDGQSRFGRVGHRRFSTGATHVNDAGSIDPSRMASMENKIKEHLNAESVTVKDAYGDGRHVSIDVIASAFEGQSAVNRQRMVYKAIWEELQSTVHAVDSM************
Disordered Region (DISPRO)
**TKTLISRPYIFSSSSRSLSCFFIHPKRSFVSQTRTFLNGSQA********************************************DAGSIDPSRMASMENKIKEHLNAESVTVKDAYGDGRHVSIDVIASAFEGQSAVNRQRMVYKAIWEELQSTVHAVDSMTTKT*AE*****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MATKTLISRPYIFSSSSRSLSCFFIHPKRSFVSQTRTFLNGSQAQTSSSLLSSCNSGNRTKLPIQSDGQSRFGRVGHRRFSTGATHVNDAGSIDPSRMASMENKIKEHLNAESVTVKDAYGDGRHVSIDVIASAFEGQSAVNRQRMVYKAIWEELQSTVHAVDSMTTKTPAEADVKK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	177	2.2.26 [Sep-21-2011]
Q84W65	371	SufE-like protein, chloro	no	no	0.435	0.207	0.311	7e-06
Q9Y3E2	137	BolA-like protein 1 OS=Ho	yes	no	0.451	0.583	0.325	7e-06
Q3T138	135	BolA-like protein 1 OS=Bo	yes	no	0.451	0.592	0.325	1e-05
Q9D8S9	137	BolA-like protein 1 OS=Mu	yes	no	0.497	0.642	0.3	2e-05
Q5RCE5	137	BolA-like protein 1 OS=Po	yes	no	0.451	0.583	0.292	4e-05

>sp|Q84W65|SUFE_ARATH SufE-like protein, chloroplastic OS=Arabidopsis thaliana GN=EMB1374 PE=1 SV=2

 Score = 50.1 bits (118), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 29/93 (31%), Positives = 51/93 (54%), Gaps = 16/93 (17%)

Query: 96  SRMASMENKIKEHLNAESVTVKD--------------AYGDGR-HVSIDVIASAFEGQSA 140
           SR   +  K+++ L+   + V+D              A  DG  H ++ +++ AF+G+S 
Sbjct: 280 SRGMRIREKLEKELDPVELEVEDVSYQHAGHAAVRGSAGDDGETHFNLRIVSDAFQGKSL 339

Query: 141 VNRQRMVYKAIWEELQSTVHAVDSMTTKTPAEA 173
           V R R++Y  + +EL+S +HA+ S+  KTPAE 
Sbjct: 340 VKRHRLIYDLLQDELKSGLHAL-SIVAKTPAEV 371

Arabidopsis thaliana (taxid: 3702)

>sp|Q9Y3E2|BOLA1_HUMAN BolA-like protein 1 OS=Homo sapiens GN=BOLA1 PE=1 SV=1

 Score = 50.1 bits (118), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 29/89 (32%), Positives = 51/89 (57%), Gaps = 9/89 (10%)

Query: 91  GSIDPSRMASMENKIKEHLNAESVTVKD-------AYGDGRHVSIDVIASAFEGQSAVNR 143
           G+I P   A++  K++E L+ E + +++         G   H  + V++S FEG S + R
Sbjct: 27  GAIGPVE-AAIRTKLEEALSPEVLELRNESGGHAVPPGSETHFRVAVVSSRFEGLSPLQR 85

Query: 144 QRMVYKAIWEELQSTVHAVDSMTTKTPAE 172
            R+V+ A+ EEL   VHA+ ++  +TPA+
Sbjct: 86  HRLVHAALAEELGGPVHAL-AIQARTPAQ 113

Homo sapiens (taxid: 9606)

>sp|Q3T138|BOLA1_BOVIN BolA-like protein 1 OS=Bos taurus GN=BOLA1 PE=2 SV=1

 Score = 49.7 bits (117), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 29/89 (32%), Positives = 50/89 (56%), Gaps = 9/89 (10%)

Query: 91  GSIDPSRMASMENKIKEHLNAESVTVKD-------AYGDGRHVSIDVIASAFEGQSAVNR 143
           G I P   A++  K+++ LN E + +++         G   H  + V++S FEG S + R
Sbjct: 27  GVIGPVE-AAIRTKLEQALNPEVLELRNESGGHAVPPGSETHFRVAVVSSRFEGLSPLQR 85

Query: 144 QRMVYKAIWEELQSTVHAVDSMTTKTPAE 172
            R+V+ A+ EEL   VHA+ ++  +TPA+
Sbjct: 86  HRLVHAALSEELAGPVHAL-AIQARTPAQ 113

Bos taurus (taxid: 9913)

>sp|Q9D8S9|BOLA1_MOUSE BolA-like protein 1 OS=Mus musculus GN=Bola1 PE=1 SV=1

 Score = 48.9 bits (115), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 30/100 (30%), Positives = 55/100 (55%), Gaps = 12/100 (12%)

Query: 80  FSTGATHVNDAGSIDPSRMASMENKIKEHLNAESVTVKD-------AYGDGRHVSIDVIA 132
            S G+     AG ++    A++  K+++ L+ E + +++         G   H  + V++
Sbjct: 19  VSRGSAGSAAAGPVE----AAIRAKLEQALSPEVLELRNESGGHAVPAGSETHFRVAVVS 74

Query: 133 SAFEGQSAVNRQRMVYKAIWEELQSTVHAVDSMTTKTPAE 172
           S FEG S + R R+V++A+ EEL   VHA+ ++  KTPA+
Sbjct: 75  SRFEGMSPLQRHRLVHEALSEELAGPVHAL-AIQAKTPAQ 113

Mus musculus (taxid: 10090)

>sp|Q5RCE5|BOLA1_PONAB BolA-like protein 1 OS=Pongo abelii GN=BOLA1 PE=2 SV=1

 Score = 47.8 bits (112), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 26/89 (29%), Positives = 51/89 (57%), Gaps = 9/89 (10%)

Query: 91  GSIDPSRMASMENKIKEHLNAESVTVKD-------AYGDGRHVSIDVIASAFEGQSAVNR 143
           G++ P   A++  K+++ L+ E + +++         G   H  + V++S FEG S + R
Sbjct: 27  GAVGPVE-AAIRTKLEQALSPEVLELRNESGGHAVPPGSETHFRVAVVSSRFEGLSPLQR 85

Query: 144 QRMVYKAIWEELQSTVHAVDSMTTKTPAE 172
            R+++ A+ EEL   VHA+ ++  +TPA+
Sbjct: 86  HRLIHAALAEELAGPVHAL-AIQARTPAQ 113

Pongo abelii (taxid: 9601)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	177
255566058	174	transcription regulator, putative [Ricin	0.943	0.959	0.631	4e-52
224126137	171	predicted protein [Populus trichocarpa]	0.740	0.766	0.705	3e-44
225454591	161	PREDICTED: bolA-like protein 1 [Vitis vi	0.898	0.987	0.603	8e-43
297807777	174	hypothetical protein ARALYDRAFT_909754 [	0.887	0.902	0.542	1e-39
351726642	157	uncharacterized protein LOC100306682 [Gl	0.768	0.866	0.585	3e-39
388501034	171	unknown [Lotus japonicus]	0.627	0.649	0.723	4e-39
388498358	163	unknown [Medicago truncatula]	0.807	0.877	0.591	1e-38
15237987	177	BolA-like protein [Arabidopsis thaliana]	0.898	0.898	0.545	1e-38
449451777	177	PREDICTED: uncharacterized protein LOC10	0.700	0.700	0.648	3e-38
116783960	173	unknown [Picea sitchensis]	0.655	0.670	0.639	1e-35

>gi|255566058|ref|XP_002524017.1| transcription regulator, putative [Ricinus communis] gi|223536744|gb|EEF38385.1| transcription regulator, putative [Ricinus communis]

 Score =  209 bits (532), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 113/179 (63%), Positives = 129/179 (72%), Gaps = 12/179 (6%)

Query: 4   KTLISRPYIFSSSSRSLSCFFIHPKRSFVSQTRTFLNGSQAQTSSSLLSSCNSGNRTKLP 63
           KTLI RPYI SS+      F    KR  VS +  F   S+   ++ LL SC +  +TKL 
Sbjct: 3   KTLIWRPYIISSTRN----FIQTQKRRVVSHSTIFPKKSE---TNLLLLSCTNNTKTKLQ 55

Query: 64  IQSDGQSR-----FGRVGHRRFSTGATHVNDAGSIDPSRMASMENKIKEHLNAESVTVKD 118
            +S G ++     +G VG+RRFS  ATHVNDAGSID   M SME KIKE L+A+SV VKD
Sbjct: 56  TESSGYNKLSKLGYGVVGNRRFSIRATHVNDAGSIDSPLMQSMEKKIKESLDADSVIVKD 115

Query: 119 AYGDGRHVSIDVIASAFEGQSAVNRQRMVYKAIWEELQSTVHAVDSMTTKTPAEADVKK 177
           AYGDGRHVSIDVI+SAFEGQSAVNRQRMVYKAIWEELQSTVHAVD MTTKTPAEA  +K
Sbjct: 116 AYGDGRHVSIDVISSAFEGQSAVNRQRMVYKAIWEELQSTVHAVDQMTTKTPAEAAAQK 174

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224126137|ref|XP_002319764.1| predicted protein [Populus trichocarpa] gi|118482877|gb|ABK93353.1| unknown [Populus trichocarpa] gi|222858140|gb|EEE95687.1| predicted protein [Populus trichocarpa]

 Score =  182 bits (463), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 96/136 (70%), Positives = 107/136 (78%), Gaps = 5/136 (3%)

Query: 45  QTSSSLLSSCNSGNRTKLPIQSDGQSR--FGRVGHRRFSTGATH-VNDAGSIDPSRMASM 101
           +T  +LL SC   NRTKL  ++ G  +  FG VG+RRFST A+  VNDAGSID   M SM
Sbjct: 38  KTQPNLLFSC--ANRTKLHFETHGFVKLGFGSVGNRRFSTEASRDVNDAGSIDSPLMKSM 95

Query: 102 ENKIKEHLNAESVTVKDAYGDGRHVSIDVIASAFEGQSAVNRQRMVYKAIWEELQSTVHA 161
           ENKIKE L AESV+VKDAYGDGRHV IDVI+ AFEGQSAVNRQRMVYKAIWEELQSTVHA
Sbjct: 96  ENKIKEELTAESVSVKDAYGDGRHVCIDVISEAFEGQSAVNRQRMVYKAIWEELQSTVHA 155

Query: 162 VDSMTTKTPAEADVKK 177
           VD MTT+TP EA  +K
Sbjct: 156 VDQMTTRTPTEAAAQK 171

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225454591|ref|XP_002264335.1| PREDICTED: bolA-like protein 1 [Vitis vinifera]

 Score =  178 bits (451), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 105/174 (60%), Positives = 117/174 (67%), Gaps = 15/174 (8%)

Query: 4   KTLISRPYIFSSSSRSLSCFFIHPKRSFVSQTRTFLNGSQAQTSSSLLSSCNSGNRTKLP 63
           KTL  RPY+ S S   L   F  P   F S   +FL   Q +             R +L 
Sbjct: 3   KTLAIRPYLHSISRVRL---FRGPLPIFQSSNLSFL--PQHRLGDGF------QKRQRLQ 51

Query: 64  IQSDGQSRFGRVGHRRFSTGATHVNDAGSIDPSRMASMENKIKEHLNAESVTVKDAYGDG 123
           I+     +F  V  +RF+T ATHVND GSID   M SMENKIKEHLNAESV+VKDAYGDG
Sbjct: 52  IRD---PKFMMVV-QRFTTRATHVNDPGSIDSPLMQSMENKIKEHLNAESVSVKDAYGDG 107

Query: 124 RHVSIDVIASAFEGQSAVNRQRMVYKAIWEELQSTVHAVDSMTTKTPAEADVKK 177
           RHVSIDVI+SAFEGQSAVNRQRMVYKAIWEELQSTVHAVD M+T+TP EA  KK
Sbjct: 108 RHVSIDVISSAFEGQSAVNRQRMVYKAIWEELQSTVHAVDQMSTRTPTEAAAKK 161

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297807777|ref|XP_002871772.1| hypothetical protein ARALYDRAFT_909754 [Arabidopsis lyrata subsp. lyrata] gi|297317609|gb|EFH48031.1| hypothetical protein ARALYDRAFT_909754 [Arabidopsis lyrata subsp. lyrata]

 Score =  167 bits (424), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 95/175 (54%), Positives = 115/175 (65%), Gaps = 18/175 (10%)

Query: 8   SRPYIFSSSSR-SLSCFFIHPKRSFVSQTRTFLNGSQAQTSSSLLS------SCNSGNRT 60
           +RPY+  SS+R SL   F   KR F S +   +  + ++  S++LS      S   GNR 
Sbjct: 9   TRPYVLLSSTRASLYLLFQSSKRPFASFSAPLVRITNSRCVSAVLSRKETAPSSIYGNRV 68

Query: 61  KLPIQSDGQSRFG--RVGHRRFSTGATHVNDAGSIDPSRMASMENKIKEHLNAESVTVKD 118
                    S FG   +  R FST ++ +NDAGSID + M SME KIKE LNAESVTV D
Sbjct: 69  ---------SGFGVLDIRSRNFSTRSSQINDAGSIDQTLMQSMEQKIKEQLNAESVTVTD 119

Query: 119 AYGDGRHVSIDVIASAFEGQSAVNRQRMVYKAIWEELQSTVHAVDSMTTKTPAEA 173
             GDGRHV I+V++SAFEGQSAVNRQRMVYKAIWEELQ+ VHAVD MTTKTP+E 
Sbjct: 120 MSGDGRHVCINVVSSAFEGQSAVNRQRMVYKAIWEELQNVVHAVDQMTTKTPSEV 174

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351726642|ref|NP_001238669.1| uncharacterized protein LOC100306682 [Glycine max] gi|255629267|gb|ACU14978.1| unknown [Glycine max]

 Score =  166 bits (421), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 92/157 (58%), Positives = 105/157 (66%), Gaps = 21/157 (13%)

Query: 24  FIHPKRSFVSQTRTFLNGSQAQTSSS----LLSSCNSGNRTKLPIQSDGQSRFGRVGHRR 79
            + P +S +S  R FL  S A TS S     L S    + T L               R 
Sbjct: 18  LVKPYKSILS--RAFLFSSPASTSHSHNTQFLRSVTFFSPTSL---------------RN 60

Query: 80  FSTGATHVNDAGSIDPSRMASMENKIKEHLNAESVTVKDAYGDGRHVSIDVIASAFEGQS 139
           F++ ATH+NDA SID   + SM+NKIKE LNAESV+VKDAYGDGRHVSIDV+A+AFEGQS
Sbjct: 61  FNSRATHLNDADSIDSPLIQSMQNKIKEQLNAESVSVKDAYGDGRHVSIDVVATAFEGQS 120

Query: 140 AVNRQRMVYKAIWEELQSTVHAVDSMTTKTPAEADVK 176
           AVNRQRMVYKAIWEELQ+ VHAVD MTT TPAEA  K
Sbjct: 121 AVNRQRMVYKAIWEELQTVVHAVDQMTTSTPAEAAAK 157

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388501034|gb|AFK38583.1| unknown [Lotus japonicus]

 Score =  166 bits (419), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 81/112 (72%), Positives = 92/112 (82%), Gaps = 1/112 (0%)

Query: 62  LPIQSDGQSRFGRVGHRRFSTGATHVNDAGSIDPSRMASMENKIKEHLNAESVTVKDAYG 121
           LP+  D  S F     R+FS+ AT++NDAGS+D   M SME KIKE LNA+SV VKDAYG
Sbjct: 55  LPLH-DSLSSFILSPIRKFSSRATNINDAGSVDLPLMQSMEKKIKEQLNADSVIVKDAYG 113

Query: 122 DGRHVSIDVIASAFEGQSAVNRQRMVYKAIWEELQSTVHAVDSMTTKTPAEA 173
           DGRHVSIDV+++AFEGQSAVNRQR+VYKAIWEELQSTVHAVD MTT TPAEA
Sbjct: 114 DGRHVSIDVVSTAFEGQSAVNRQRLVYKAIWEELQSTVHAVDQMTTSTPAEA 165

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388498358|gb|AFK37245.1| unknown [Medicago truncatula]

 Score =  164 bits (416), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 87/147 (59%), Positives = 107/147 (72%), Gaps = 4/147 (2%)

Query: 28  KRSFVSQTRTFLNGSQAQTSSSLLSSCNSGNRTKLPIQSDGQSRFGRVGH-RRFSTGATH 86
           +R+     R +L  + +    S L S +    T+ P + D +  F  V   R+F++ AT+
Sbjct: 16  RRALPVLVRPYLVRTTSPNHISFLRSTSQA--TRFP-KHDQKLLFTSVSSIRKFTSRATN 72

Query: 87  VNDAGSIDPSRMASMENKIKEHLNAESVTVKDAYGDGRHVSIDVIASAFEGQSAVNRQRM 146
           VNDAGSID   + SM+ KIKE LNAE+V+VKDAYGDGRHVSIDV+++AFEGQSAVNRQRM
Sbjct: 73  VNDAGSIDLPIIQSMQQKIKEQLNAEAVSVKDAYGDGRHVSIDVVSTAFEGQSAVNRQRM 132

Query: 147 VYKAIWEELQSTVHAVDSMTTKTPAEA 173
           VYKAIWEELQS VHAVD MTTKTPAEA
Sbjct: 133 VYKAIWEELQSAVHAVDQMTTKTPAEA 159

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15237987|ref|NP_197258.1| BolA-like protein [Arabidopsis thaliana] gi|9755781|emb|CAC01900.1| putative protein [Arabidopsis thaliana] gi|21618086|gb|AAM67136.1| unknown [Arabidopsis thaliana] gi|98960931|gb|ABF58949.1| At5g17560 [Arabidopsis thaliana] gi|332005060|gb|AED92443.1| BolA-like protein [Arabidopsis thaliana]

 Score =  164 bits (415), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 95/174 (54%), Positives = 115/174 (66%), Gaps = 15/174 (8%)

Query: 8   SRPYIFSSSSR-SLSCFFIHPKRSFVSQTRTFLNGSQAQTSSSLLS------SCNSGNRT 60
           +RPY+  SS+R SL   F   KR F S +   +  + ++  S++LS      S   GNR 
Sbjct: 9   TRPYVLLSSTRASLYRLFQSSKRPFASFSAPLVRFTNSRCVSAVLSRKETAPSSIYGNRV 68

Query: 61  KLPIQSDGQSRFGRVGHR--RFSTGATHVNDAGSIDPSRMASMENKIKEHLNAESVTVKD 118
                    S FG +  R   FST ++ +NDAGSID + M SME KIKE LNAESVTV D
Sbjct: 69  ------SRVSGFGALDIRSLNFSTKSSQINDAGSIDQTLMQSMELKIKEQLNAESVTVTD 122

Query: 119 AYGDGRHVSIDVIASAFEGQSAVNRQRMVYKAIWEELQSTVHAVDSMTTKTPAE 172
             GDGRHV I+V++SAFEGQSAVNRQRMVYKAIWEELQ+ VHAVD MTTKTP+E
Sbjct: 123 MSGDGRHVCINVVSSAFEGQSAVNRQRMVYKAIWEELQNVVHAVDQMTTKTPSE 176

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449451777|ref|XP_004143637.1| PREDICTED: uncharacterized protein LOC101210684 isoform 1 [Cucumis sativus]

 Score =  163 bits (412), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 83/128 (64%), Positives = 99/128 (77%), Gaps = 4/128 (3%)

Query: 50  LLSSCNSGNRTK---LPIQSDGQSRFGRVGH-RRFSTGATHVNDAGSIDPSRMASMENKI 105
           ++S+  +G R+K   +   S     F + G  R  S  AT VN++GSID   M SMENKI
Sbjct: 45  IISTSTTGLRSKSSNVAKYSRANGTFPKWGSSRNLSIRATQVNESGSIDSPLMQSMENKI 104

Query: 106 KEHLNAESVTVKDAYGDGRHVSIDVIASAFEGQSAVNRQRMVYKAIWEELQSTVHAVDSM 165
           KE L+A+SV+VKDAYGDGRHVSIDV++SAFEGQ+AVNRQRMVYKAIWEELQSTVHAVD M
Sbjct: 105 KEQLDAQSVSVKDAYGDGRHVSIDVVSSAFEGQTAVNRQRMVYKAIWEELQSTVHAVDQM 164

Query: 166 TTKTPAEA 173
           TT+TPAEA
Sbjct: 165 TTRTPAEA 172

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|116783960|gb|ABK23160.1| unknown [Picea sitchensis]

 Score =  154 bits (390), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 78/122 (63%), Positives = 93/122 (76%), Gaps = 6/122 (4%)

Query: 57  GNRTKLPIQSDGQSRFG-RVGHRR-----FSTGATHVNDAGSIDPSRMASMENKIKEHLN 110
           G  ++L    DG+  +G  +G R+     F   +T V+D+GS+D   M +M+NKIKE LN
Sbjct: 45  GRSSRLAEGFDGRQEWGSNLGARKSSRHGFCVRSTEVSDSGSMDSPMMQAMQNKIKEQLN 104

Query: 111 AESVTVKDAYGDGRHVSIDVIASAFEGQSAVNRQRMVYKAIWEELQSTVHAVDSMTTKTP 170
           A+ V VKDAYGDGRHVSIDVI+SAFEGQS VNRQRMVYKAIWEELQ+TVHAVD MTTKTP
Sbjct: 105 ADEVIVKDAYGDGRHVSIDVISSAFEGQSHVNRQRMVYKAIWEELQNTVHAVDQMTTKTP 164

Query: 171 AE 172
           AE
Sbjct: 165 AE 166

Source: Picea sitchensis

Species: Picea sitchensis

Genus: Picea

Family: Pinaceae

Order: Coniferales

Class: Coniferopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	177
TAIR|locus:2151396	177	AT5G17560 "AT5G17560" [Arabido	0.581	0.581	0.714	3.2e-33
TIGR_CMR|CBU_0582	79	CBU_0582 "bolA protein, putati	0.316	0.708	0.456	5.3e-08
UNIPROTKB|F1SDF8	137	BOLA1 "Uncharacterized protein	0.536	0.693	0.354	6.8e-08
TAIR|locus:505006189	160	AT1G55805 "AT1G55805" [Arabido	0.491	0.543	0.313	1.1e-07
UNIPROTKB|Q5LS99	78	SPO1869 "BolA family protein"	0.395	0.897	0.361	2.3e-07
TIGR_CMR|SPO_1869	78	SPO_1869 "BolA family protein"	0.395	0.897	0.361	2.3e-07
TAIR|locus:2131488	371	CPSUFE "chloroplast sulfur E"	0.429	0.204	0.353	5.4e-07
MGI|MGI:1916418	137	Bola1 "bolA-like 1 (E. coli)"	0.514	0.664	0.326	6.1e-07
UNIPROTKB|Q3T138	135	BOLA1 "BolA-like protein 1" [B	0.457	0.6	0.333	1.3e-06
UNIPROTKB|Q9Y3E2	137	BOLA1 "BolA-like protein 1" [H	0.457	0.591	0.333	1.3e-06

TAIR|locus:2151396 AT5G17560 "AT5G17560" [Arabidopsis thaliana (taxid:3702)]

 Score = 362 (132.5 bits), Expect = 3.2e-33, P = 3.2e-33
 Identities = 75/105 (71%), Positives = 85/105 (80%)

Query:    70 SRFGRVGHR--RFSTGATHVNDAGSIDPSRMASMENKIKEHLNAESVTVKDAYGDGRHVS 127
             S FG +  R   FST ++ +NDAGSID + M SME KIKE LNAESVTV D  GDGRHV 
Sbjct:    72 SGFGALDIRSLNFSTKSSQINDAGSIDQTLMQSMELKIKEQLNAESVTVTDMSGDGRHVC 131

Query:   128 IDVIASAFEGQSAVNRQRMVYKAIWEELQSTVHAVDSMTTKTPAE 172
             I+V++SAFEGQSAVNRQRMVYKAIWEELQ+ VHAVD MTTKTP+E
Sbjct:   132 INVVSSAFEGQSAVNRQRMVYKAIWEELQNVVHAVDQMTTKTPSE 176

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0019243 "methylglyoxal catabolic process to D-lactate" evidence=RCA

TIGR_CMR|CBU_0582 CBU_0582 "bolA protein, putative" [Coxiella burnetii RSA 493 (taxid:227377)]

 Score = 124 (48.7 bits), Expect = 5.3e-08, P = 5.3e-08
 Identities = 26/57 (45%), Positives = 35/57 (61%)

Query:   116 VKDAYGDGRHVSIDVIASAFEGQSAVNRQRMVYKAIWEELQSTVHAVDSMTTKTPAE 172
             V  A GDG H    V+   FEGQ+A+ R R+VY A+   +QS +HA+ S+ T TP E
Sbjct:    20 VISAEGDGHHFEAVVLCPTFEGQTALTRHRLVYNALGSHMQSDIHAL-SLKTYTPDE 75

GO:0006950 "response to stress" evidence=ISS

GO:0008360 "regulation of cell shape" evidence=ISS

UNIPROTKB|F1SDF8 BOLA1 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 123 (48.4 bits), Expect = 6.8e-08, P = 6.8e-08
 Identities = 39/110 (35%), Positives = 61/110 (55%)

Query:    70 SRFGRVGHRRFSTGATHVNDAGSIDPSRMASMENKIKEHLNAESVTVKDAYGD-----GR 124
             S  GRV   R STGA      G+I P   A++  K+++ LN E + +++  G      G 
Sbjct:    12 SMAGRVCLSRSSTGA------GTIGPVE-AAIRMKLEQALNPEVLELRNESGGHAVPPGS 64

Query:   125 --HVSIDVIASAFEGQSAVNRQRMVYKAIWEELQSTVHAVDSMTTKTPAE 172
               H  + V++S FEG S + R R+V+ A+ EEL   VHA+ ++  +TPA+
Sbjct:    65 ETHFRVAVVSSRFEGLSPLQRHRLVHTALSEELAGPVHAL-AIQARTPAQ 113

GO:0005739 "mitochondrion" evidence=IEA

TAIR|locus:505006189 AT1G55805 "AT1G55805" [Arabidopsis thaliana (taxid:3702)]

 Score = 121 (47.7 bits), Expect = 1.1e-07, P = 1.1e-07
 Identities = 32/102 (31%), Positives = 60/102 (58%)

Query:    88 NDAGSIDPSRMASMENKIKEHLNAESVTVKD-AY------G-DGR-----HVSIDVIASA 134
             +D+G+I+ +R + M  K+++ L    + ++D +Y      G  GR     H ++ +++  
Sbjct:    60 SDSGAIE-NRASRMREKLQKELEPVELVIEDVSYQHAGHAGMKGRTDDETHFNVKIVSKG 118

Query:   135 FEGQSAVNRQRMVYKAIWEELQSTVHAVDSMTTKTPAEADVK 176
             FEG + V R R+VY  + EEL + +HA+ S+ +KTP+E+  K
Sbjct:   119 FEGMNLVKRHRLVYHLLREELDTGLHAL-SIVSKTPSESPSK 159

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

GO:0019243 "methylglyoxal catabolic process to D-lactate" evidence=RCA

UNIPROTKB|Q5LS99 SPO1869 "BolA family protein" [Ruegeria pomeroyi DSS-3 (taxid:246200)]

 Score = 118 (46.6 bits), Expect = 2.3e-07, P = 2.3e-07
 Identities = 26/72 (36%), Positives = 42/72 (58%)

Query:   101 MENKIKEHLNAESVTVKDAYGDGRHVSIDVIASAFEGQSAVNRQRMVYKAIWEELQS-TV 159
             +E  I+       +T+ D  GDG H + +V+  +F GQS + +QR V  A+  E+ S  +
Sbjct:     8 IEALIRASFPKAKITITDLAGDGNHWAAEVVDESFRGQSRIQQQRAVNAAVKPEIDSGKL 67

Query:   160 HAVDSMTTKTPA 171
             HA+ ++TTK PA
Sbjct:    68 HAL-ALTTKAPA 78

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|SPO_1869 SPO_1869 "BolA family protein" [Ruegeria pomeroyi DSS-3 (taxid:246200)]

 Score = 118 (46.6 bits), Expect = 2.3e-07, P = 2.3e-07
 Identities = 26/72 (36%), Positives = 42/72 (58%)

Query:   101 MENKIKEHLNAESVTVKDAYGDGRHVSIDVIASAFEGQSAVNRQRMVYKAIWEELQS-TV 159
             +E  I+       +T+ D  GDG H + +V+  +F GQS + +QR V  A+  E+ S  +
Sbjct:     8 IEALIRASFPKAKITITDLAGDGNHWAAEVVDESFRGQSRIQQQRAVNAAVKPEIDSGKL 67

Query:   160 HAVDSMTTKTPA 171
             HA+ ++TTK PA
Sbjct:    68 HAL-ALTTKAPA 78

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2131488 CPSUFE "chloroplast sulfur E" [Arabidopsis thaliana (taxid:3702)]

 Score = 122 (48.0 bits), Expect = 5.4e-07, P = 5.4e-07
 Identities = 29/82 (35%), Positives = 51/82 (62%)

Query:    93 IDPSRMASMENKIKEHLNAESVTVKDAYGD-GR-HVSIDVIASAFEGQSAVNRQRMVYKA 150
             +DP  +  +E+   +H  A    V+ + GD G  H ++ +++ AF+G+S V R R++Y  
Sbjct:   293 LDPVEL-EVEDVSYQH--AGHAAVRGSAGDDGETHFNLRIVSDAFQGKSLVKRHRLIYDL 349

Query:   151 IWEELQSTVHAVDSMTTKTPAE 172
             + +EL+S +HA+ S+  KTPAE
Sbjct:   350 LQDELKSGLHAL-SIVAKTPAE 370

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0009793 "embryo development ending in seed dormancy" evidence=RCA;NAS

GO:0005739 "mitochondrion" evidence=IDA

GO:0008047 "enzyme activator activity" evidence=IGI;IDA

GO:0016226 "iron-sulfur cluster assembly" evidence=IGI;RCA

GO:0009570 "chloroplast stroma" evidence=IDA

GO:0009073 "aromatic amino acid family biosynthetic process" evidence=RCA

GO:0010027 "thylakoid membrane organization" evidence=RCA

GO:0010228 "vegetative to reproductive phase transition of meristem" evidence=RCA

GO:0019243 "methylglyoxal catabolic process to D-lactate" evidence=RCA

GO:0048481 "ovule development" evidence=RCA

MGI|MGI:1916418 Bola1 "bolA-like 1 (E. coli)" [Mus musculus (taxid:10090)]

 Score = 114 (45.2 bits), Expect = 6.1e-07, P = 6.1e-07
 Identities = 31/95 (32%), Positives = 49/95 (51%)

Query:    81 STGATHVNDAGSIDPSRMASMENKIKEH---LNAESVTVKDAYGDGRHVSIDVIASAFEG 137
             S G+     AG ++ +  A +E  +      L  ES       G   H  + V++S FEG
Sbjct:    20 SRGSAGSAAAGPVEAAIRAKLEQALSPEVLELRNESGGHAVPAGSETHFRVAVVSSRFEG 79

Query:   138 QSAVNRQRMVYKAIWEELQSTVHAVDSMTTKTPAE 172
              S + R R+V++A+ EEL   VHA+ ++  KTPA+
Sbjct:    80 MSPLQRHRLVHEALSEELAGPVHAL-AIQAKTPAQ 113

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=IEA

GO:0005739 "mitochondrion" evidence=IDA

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q3T138 BOLA1 "BolA-like protein 1" [Bos taurus (taxid:9913)]

 Score = 111 (44.1 bits), Expect = 1.3e-06, P = 1.3e-06
 Identities = 30/90 (33%), Positives = 52/90 (57%)

Query:    90 AGSIDPSRMASMENKIKEHLNAESVTVKDAYGD-----GR--HVSIDVIASAFEGQSAVN 142
             +G I P   A++  K+++ LN E + +++  G      G   H  + V++S FEG S + 
Sbjct:    26 SGVIGPVE-AAIRTKLEQALNPEVLELRNESGGHAVPPGSETHFRVAVVSSRFEGLSPLQ 84

Query:   143 RQRMVYKAIWEELQSTVHAVDSMTTKTPAE 172
             R R+V+ A+ EEL   VHA+ ++  +TPA+
Sbjct:    85 RHRLVHAALSEELAGPVHAL-AIQARTPAQ 113

GO:0005576 "extracellular region" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

UNIPROTKB|Q9Y3E2 BOLA1 "BolA-like protein 1" [Homo sapiens (taxid:9606)]

 Score = 111 (44.1 bits), Expect = 1.3e-06, P = 1.3e-06
 Identities = 30/90 (33%), Positives = 53/90 (58%)

Query:    90 AGSIDPSRMASMENKIKEHLNAESVTVKDAYGD-----GR--HVSIDVIASAFEGQSAVN 142
             +G+I P   A++  K++E L+ E + +++  G      G   H  + V++S FEG S + 
Sbjct:    26 SGAIGPVE-AAIRTKLEEALSPEVLELRNESGGHAVPPGSETHFRVAVVSSRFEGLSPLQ 84

Query:   143 RQRMVYKAIWEELQSTVHAVDSMTTKTPAE 172
             R R+V+ A+ EEL   VHA+ ++  +TPA+
Sbjct:    85 RHRLVHAALAEELGGPVHAL-AIQARTPAQ 113

GO:0005739 "mitochondrion" evidence=IEA

GO:0005576 "extracellular region" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: eugene3.00130735 SubName- Full=Putative uncharacterized protein; (171 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	177
pfam01722	72	pfam01722, BolA, BolA-like protein	8e-19
COG0271	90	COG0271, BolA, Stress-induced morphogen (activity	3e-12
COG5007	80	COG5007, COG5007, Predicted transcriptional regula	1e-10
PRK11628	105	PRK11628, PRK11628, transcriptional regulator BolA	1e-04

>gnl|CDD|216662 pfam01722, BolA, BolA-like protein

 Score = 75.7 bits (187), Expect = 8e-19
 Identities = 30/71 (42%), Positives = 43/71 (60%), Gaps = 3/71 (4%)

Query: 104 KIKEHLNAESVTVKD--AYGDGRHVSIDVIASAFEGQSAVNRQRMVYKAIWEELQSTVHA 161
            ++  L    + V+D    GDG H  + V++ AFEG+S V R R+VY A+ EEL S +HA
Sbjct: 2   LLEAALPPAHLEVEDESHKGDGSHFKVVVVSDAFEGKSLVKRHRLVYAALKEELASGIHA 61

Query: 162 VDSMTTKTPAE 172
           + S+ T TP E
Sbjct: 62  L-SIKTYTPEE 71

This family consist of the morphoprotein BolA from E. coli and its various homologues. In E. coli over expression of this protein causes round morphology and may be involved in switching the cell between elongation and septation systems during cell division. The expression of BolA is growth rate regulated and is induced during the transition into the the stationary phase. BolA is also induced by stress during early stages of growth and may have a general role in stress response. It has also been suggested that BolA can induce the transcription of penicillin binding proteins 6 and 5. Length = 72

>gnl|CDD|223349 COG0271, BolA, Stress-induced morphogen (activity unknown) [Signal transduction mechanisms]

 Score = 59.3 bits (144), Expect = 3e-12
 Identities = 26/84 (30%), Positives = 44/84 (52%), Gaps = 9/84 (10%)

Query: 101 MENKIKEHLNAESVTVKD--------AYGDGRHVSIDVIASAFEGQSAVNRQRMVYKAIW 152
           +E K++       + + D        A G G H  + +++ AF+G+S V R R+VY A+ 
Sbjct: 8   IEKKLRAAFPPSFLEIIDESHRHHGHAGGGGSHFKVVIVSEAFQGKSLVARHRLVYSALK 67

Query: 153 EELQSTVHAVDSMTTKTPAEADVK 176
           +EL   +HA+ ++ T TP E   K
Sbjct: 68  DELSGGIHAL-ALHTYTPEEWKGK 90

Length = 90

>gnl|CDD|227340 COG5007, COG5007, Predicted transcriptional regulator, BolA superfamily [Transcription]

 Score = 54.7 bits (132), Expect = 1e-10
 Identities = 24/69 (34%), Positives = 38/69 (55%), Gaps = 5/69 (7%)

Query: 105 IKEHLNAESVTVKDAYGDGRHVSIDVIASAFEGQSAVNRQRMVYKAIWEELQS-TVHAVD 163
           ++  L  E V V+   GDG H  +  ++  F G+S V RQ++VY  +   +    +HA+ 
Sbjct: 10  LENALPLEEVEVE---GDGSHFQVIAVSEEFAGKSRVKRQQLVYAPLMAYIADNEIHAL- 65

Query: 164 SMTTKTPAE 172
           S+ T TPAE
Sbjct: 66  SIKTYTPAE 74

Length = 80

>gnl|CDD|183243 PRK11628, PRK11628, transcriptional regulator BolA; Provisional

 Score = 39.4 bits (92), Expect = 1e-04
 Identities = 19/52 (36%), Positives = 31/52 (59%), Gaps = 1/52 (1%)

Query: 121 GDGRHVSIDVIASAFEGQSAVNRQRMVYKAIWEELQSTVHAVDSMTTKTPAE 172
           G   H  + +++  F G+  +NR RM+Y  + EEL +TVHA+ ++ T T  E
Sbjct: 34  GSESHFKVVLVSDRFTGERFLNRHRMIYSTLAEELSTTVHAL-ALHTYTIKE 84

Length = 105

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	177
PRK11628	105	transcriptional regulator BolA; Provisional	99.97
PF01722	76	BolA: BolA-like protein; InterPro: IPR002634 This	99.95
KOG3348	85	consensus BolA (bacterial stress-induced morphogen	99.95
COG0271	90	BolA Stress-induced morphogen (activity unknown) [	99.95
COG5007	80	Predicted transcriptional regulator, BolA superfam	99.93
KOG2313	100	consensus Stress-induced protein UVI31+ [Signal tr	99.91

>PRK11628 transcriptional regulator BolA; Provisional

Probab=99.97  E-value=1.8e-30  Score=198.31  Aligned_cols=80  Identities=29%  Similarity=0.444  Sum_probs=76.4

Q ss_pred             hHHHHHHHHHHhhCCCCeEEEEecC-------CCCceEEEEEEcCccCCCCHHHHHHHHHHHHHHHHcCccccccccccc
Q 030420           96 SRMASMENKIKEHLNAESVTVKDAY-------GDGRHVSIDVIASAFEGQSAVNRQRMVYKAIWEELQSTVHAVDSMTTK  168 (177)
Q Consensus        96 p~~~~I~~kL~~~L~~~~leV~D~S-------G~GsHF~I~VVS~~F~GmS~V~RHR~Vy~~Lkdei~~~IHAL~sIkT~  168 (177)
                      ...++|+++|+.+|+|.+|+|+|+|       |+|+||+|+|||+.|+||++|+|||+||++|+|+|+++|||| +|+|+
T Consensus         2 m~~~~I~~~L~~~l~~~~l~V~d~S~~H~~~~g~~~Hf~v~IVS~~F~G~s~v~RHRlVy~~L~~~i~~~IHAL-si~t~   80 (105)
T PRK11628          2 MIREQIEEKLRAAFQPVFLEVVDESYRHNVPAGSESHFKVVLVSDRFTGERFLNRHRMIYSTLAEELSTTVHAL-ALHTY   80 (105)
T ss_pred             CcHHHHHHHHHhhCCCcEEEEEECcccccCCCCCCceEEEEEEChHhCCCCHHHHHHHHHHHHHHHHhCCccce-eeecC
Confidence            4678999999999999999999999       789999999999999999999999999999999999889999 79999


Q ss_pred             Chhhhhhc
Q 030420          169 TPAEADVK  176 (177)
Q Consensus       169 TP~Ew~kk  176 (177)
                      ||+||+++
T Consensus        81 tp~Ew~~~   88 (105)
T PRK11628         81 TIKEWEGL   88 (105)
T ss_pred             CHHHHHHh
Confidence            99999864

>PF01722 BolA: BolA-like protein; InterPro: IPR002634 This family consist of the morpho-protein BolA from Escherichia coli and its various homologs

Probab=99.95  E-value=1.9e-28  Score=177.11  Aligned_cols=69  Identities=39%  Similarity=0.678  Sum_probs=63.9

Q ss_pred             HHHhhCCCCeEEEEecC-------CCCceEEEEEEcCccCCCCHHHHHHHHHHHHHHHHcCcccccccccccChhhh
Q 030420          104 KIKEHLNAESVTVKDAY-------GDGRHVSIDVIASAFEGQSAVNRQRMVYKAIWEELQSTVHAVDSMTTKTPAEA  173 (177)
Q Consensus       104 kL~~~L~~~~leV~D~S-------G~GsHF~I~VVS~~F~GmS~V~RHR~Vy~~Lkdei~~~IHAL~sIkT~TP~Ew  173 (177)
                      ||++.|+|.+|+|.|+|       |+|+||+|.|||+.|+||++|+||||||++|+|+|+++|||| +|+|+||+||
T Consensus         1 Kl~~~l~~~~l~V~d~S~~H~~h~~g~sHf~i~IvS~~F~g~s~i~rhr~V~~~L~~~i~~~iHAl-si~t~tp~Ew   76 (76)
T PF01722_consen    1 KLKAALPPTHLEVEDESHKHAGHAGGGSHFKIIIVSDEFEGKSRIKRHRLVYKALKDEIKDGIHAL-SIKTYTPEEW   76 (76)
T ss_dssp             HHHHHHTTSEEEEEE-SSSSSS-CCSSSEEEEEEECGGGTTS-HHHHHHHHHHHTHHHHGCTCSEE-EEEEE-HHHH
T ss_pred             ChhHhCCCcEEEEEECcccccCCCCCCceEEEEEEcHHhCCCCHHHHHHHHHHHHHHHhcCCceEE-EEEcCCcccC
Confidence            68999999999999999       569999999999999999999999999999999999899999 8999999999

In E. coli, over-expression of this protein causes round morphology and may be involved in switching the cell between elongation and septation systems during cell division []. The expression of BolA is growth rate regulated and is induced during the transition into the the stationary phase []. BolA is also induced by stress during early stages of growth [] and may have a general role in stress response. It has also been suggested that BolA can induce the transcription of penicillin binding proteins 6 and 5 [, ].; PDB: 1XS3_A 1V60_A 3O2E_A 1NY8_A 3TR3_A 2KZ0_A 2DHM_A 2KDN_A 1V9J_A.

>KOG3348 consensus BolA (bacterial stress-induced morphogen)-related protein [Signal transduction mechanisms]

Probab=99.95  E-value=4.6e-28  Score=179.41  Aligned_cols=80  Identities=31%  Similarity=0.503  Sum_probs=76.2

Q ss_pred             chHHHHHHHHHHhhCCCCeEEEEecC-CCCceEEEEEEcCccCCCCHHHHHHHHHHHHHHHHcCcccccccccccChhhh
Q 030420           95 PSRMASMENKIKEHLNAESVTVKDAY-GDGRHVSIDVIASAFEGQSAVNRQRMVYKAIWEELQSTVHAVDSMTTKTPAEA  173 (177)
Q Consensus        95 ~p~~~~I~~kL~~~L~~~~leV~D~S-G~GsHF~I~VVS~~F~GmS~V~RHR~Vy~~Lkdei~~~IHAL~sIkT~TP~Ew  173 (177)
                      ++.++.|+++|++.|.|.+|+|.|+| |||++|+|.|||+.|+|+++|+|||+||++|+|+|+. |||| +++|+||++|
T Consensus         2 ~~~e~~l~~~L~~~l~p~~v~V~D~SgGCG~~F~v~IvS~~FeGKs~L~rHRlVN~~L~Eeik~-iHal-t~kt~t~~~w   79 (85)
T KOG3348|consen    2 TVTEERLEELLTEALEPEHVEVQDVSGGCGSMFDVVIVSAAFEGKSLLARHRLVNSILAEEIKE-IHAL-TIKTYTPEEW   79 (85)
T ss_pred             cchHHHHHHHHHhhcCceEEEEEEcCCCccceEEEEEEccccCChHHHHHHHHHHHHHHHHHHH-Hhhh-eeeecChhhh
Confidence            46789999999999999999999999 5999999999999999999999999999999999997 9999 7999999999


Q ss_pred             hhc
Q 030420          174 DVK  176 (177)
Q Consensus       174 ~kk  176 (177)
                      .+.
T Consensus        80 ~~~   82 (85)
T KOG3348|consen   80 SKA   82 (85)
T ss_pred             ccc
Confidence            863

>COG0271 BolA Stress-induced morphogen (activity unknown) [Signal transduction mechanisms]

Probab=99.95  E-value=5.7e-28  Score=180.69  Aligned_cols=76  Identities=32%  Similarity=0.571  Sum_probs=73.3

Q ss_pred             HHHHHHHHhhCCCCeEEEEecC--------CCCceEEEEEEcCccCCCCHHHHHHHHHHHHHHHHcCcccccccccccCh
Q 030420           99 ASMENKIKEHLNAESVTVKDAY--------GDGRHVSIDVIASAFEGQSAVNRQRMVYKAIWEELQSTVHAVDSMTTKTP  170 (177)
Q Consensus        99 ~~I~~kL~~~L~~~~leV~D~S--------G~GsHF~I~VVS~~F~GmS~V~RHR~Vy~~Lkdei~~~IHAL~sIkT~TP  170 (177)
                      ++|+++|+++|+|..++|.|+|        |||+||+|+|||+.|+|+|+|+|||+||++|+|+|..+|||| +|+|+||
T Consensus         6 ~~Ie~~l~~~f~p~~l~i~deS~~h~~~~~g~~~Hf~i~IVS~~F~G~s~v~rHr~V~~~L~del~~~iHAL-al~t~t~   84 (90)
T COG0271           6 ERIEKKLRAAFPPSFLEIIDESHRHHGHAGGGGSHFKVVIVSEAFQGKSLVARHRLVYSALKDELSGGIHAL-ALHTYTP   84 (90)
T ss_pred             HHHHHHHHhcCCCceEEEEecccccccCCCCCCCeEEEEEEchhhCCccHHHHHHHHHHHHHHHHhccceee-EeEeecc
Confidence            5899999999999999999999        699999999999999999999999999999999999999999 7999999


Q ss_pred             hhhhh
Q 030420          171 AEADV  175 (177)
Q Consensus       171 ~Ew~k  175 (177)
                      +||+.
T Consensus        85 ~e~~~   89 (90)
T COG0271          85 EEWKG   89 (90)
T ss_pred             chhcc
Confidence            99974

>COG5007 Predicted transcriptional regulator, BolA superfamily [Transcription]

Probab=99.93  E-value=2.9e-26  Score=168.18  Aligned_cols=76  Identities=32%  Similarity=0.543  Sum_probs=72.3

Q ss_pred             HHHHHHHHHhhCCCCeEEEEecCCCCceEEEEEEcCccCCCCHHHHHHHHHHHHHHHHcC-cccccccccccChhhhhhc
Q 030420           98 MASMENKIKEHLNAESVTVKDAYGDGRHVSIDVIASAFEGQSAVNRQRMVYKAIWEELQS-TVHAVDSMTTKTPAEADVK  176 (177)
Q Consensus        98 ~~~I~~kL~~~L~~~~leV~D~SG~GsHF~I~VVS~~F~GmS~V~RHR~Vy~~Lkdei~~-~IHAL~sIkT~TP~Ew~kk  176 (177)
                      .++|+..|++.||.++++|+   |+|+||.+++||+.|+||++|+|||+||+.|.++|.+ +|||| ||+|+||+||+++
T Consensus         3 ~e~Ik~ll~~~L~~e~v~V~---Gdg~Hf~vi~Vs~~F~g~srvkrqq~vYApL~~~i~~~~IHAl-sikt~Tp~eW~~~   78 (80)
T COG5007           3 NEEIKSLLENALPLEEVEVE---GDGSHFQVIAVSEEFAGKSRVKRQQLVYAPLMAYIADNEIHAL-SIKTYTPAEWARD   78 (80)
T ss_pred             HHHHHHHHHhcCCccEEEEe---cCCceEEEEEehHhhcCccHHHHHHHHHHHHHHHhhcCceEEE-EeeecCHHHhhhc
Confidence            47899999999999999998   9999999999999999999999999999999999995 89999 8999999999975


Q ss_pred             C
Q 030420          177 K  177 (177)
Q Consensus       177 k  177 (177)
                      +
T Consensus        79 ~   79 (80)
T COG5007          79 R   79 (80)
T ss_pred             c
Confidence            3

>KOG2313 consensus Stress-induced protein UVI31+ [Signal transduction mechanisms]

Probab=99.91  E-value=9.3e-25  Score=165.87  Aligned_cols=81  Identities=40%  Similarity=0.595  Sum_probs=76.8

Q ss_pred             CCCchHHHHHHHHHHhhCCCCeEEEEecC----------C---CCceEEEEEEcCccCCCCHHHHHHHHHHHHHHHHcC-
Q 030420           92 SIDPSRMASMENKIKEHLNAESVTVKDAY----------G---DGRHVSIDVIASAFEGQSAVNRQRMVYKAIWEELQS-  157 (177)
Q Consensus        92 ~~~~p~~~~I~~kL~~~L~~~~leV~D~S----------G---~GsHF~I~VVS~~F~GmS~V~RHR~Vy~~Lkdei~~-  157 (177)
                      .+-+|++..|+++|...|.|..+++.|+|          |   +|+||+|.|||+.|+||++|+||||||++|+||+.+ 
T Consensus         6 ~~~g~~~~ri~~~l~~~lkp~~le~~n~S~~hagH~~~kg~~~~EtHFrv~vVS~~FeG~s~v~RHRlVy~~L~eEl~~~   85 (100)
T KOG2313|consen    6 GIYGPRESRIREKLFEALKPLNLELYNESHQHAGHAVPKGMDGAETHFRVEVVSSAFEGLSLVKRHRLVYKALKEELAGT   85 (100)
T ss_pred             cccCcHHHHHHHHhHhhcCcceEEEeeccccccccccccCCCCCccEEEEEEechhhCCccHHHHHHHHHHHHHHHhhcc
Confidence            44589999999999999999999999998          3   679999999999999999999999999999999999 


Q ss_pred             cccccccccccChhhh
Q 030420          158 TVHAVDSMTTKTPAEA  173 (177)
Q Consensus       158 ~IHAL~sIkT~TP~Ew  173 (177)
                      ++||| +|.++||+||
T Consensus        86 gvHAL-~i~aKTP~e~  100 (100)
T KOG2313|consen   86 GVHAL-SIMAKTPSEV  100 (100)
T ss_pred             ceeEE-EeeccCCCCC
Confidence            79999 8999999998

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	177
3tr3_A	82	Structure Of A Bola Protein Homologue From Coxiella		2e-07
1v60_A	123	Solution Structure Of Bola1 Protein From Mus Muscul		2e-06
2kz0_A	76	Solution Structure Of A Bola Protein (Ech_0303) Fro		8e-05
1xs3_A	80	Solution Structure Analysis Of The Xc975 Protein Le		3e-04
2dhm_A	107	Solution Structure Of The Bola Protein From Escheri		5e-04

>pdb|3TR3|A Chain A, Structure Of A Bola Protein Homologue From Coxiella Burnetii Length = 82

Iteration: 1
 Score = 51.6 bits (122), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 26/59 (44%), Positives = 35/59 (59%), Gaps = 1/59 (1%)
Query: 116 VKDAYGDGRHVSIDVIASAFEGQSAVNRQRMVYKAIWEELQSTVHAVDSMTTKTPAEAD 174
           V  A GDG H    V+   FEGQ+A+ R R+VY A+    QS +HA+ S+ T TP E +
Sbjct: 23  VISAEGDGHHFEAVVLCPTFEGQTALTRHRLVYNALGSHXQSDIHAL-SLKTYTPDEYE 80

>pdb|1V60|A Chain A, Solution Structure Of Bola1 Protein From Mus Musculus Length = 123

Iteration: 1
 Score = 48.5 bits (114), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 30/100 (30%), Positives = 55/100 (55%), Gaps = 12/100 (12%)
Query: 80  FSTGATHVNDAGSIDPSRMASMENKIKEHLNAESVTVKD-------AYGDGRHVSIDVIA 132
            S G+     AG ++    A++  K+++ L+ E + +++         G   H  + V++
Sbjct: 14  VSRGSAGSAAAGPVE----AAIRAKLEQALSPEVLELRNESGGHAVPAGSETHFRVAVVS 69
Query: 133 SAFEGQSAVNRQRMVYKAIWEELQSTVHAVDSMTTKTPAE 172
           S FEG S + R R+V++A+ EEL   VHA+ ++  KTPA+
Sbjct: 70  SRFEGMSPLQRHRLVHEALSEELAGPVHAL-AIQAKTPAQ 108

>pdb|2KZ0|A Chain A, Solution Structure Of A Bola Protein (Ech_0303) From Ehrlichia Chaffeensis. Seattle Structural Genomics Center For Infectious Disease Target Ehcha.10365.A Length = 76

Iteration: 1
 Score = 43.1 bits (100), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 19/53 (35%), Positives = 30/53 (56%)
Query: 99  ASMENKIKEHLNAESVTVKDAYGDGRHVSIDVIASAFEGQSAVNRQRMVYKAI 151
           + +E  I+       +TV    GD  H SI VI+S F+G+S + + RM+YK +
Sbjct: 9   SQLELLIRNAFPEAEITVTSLVGDNNHYSIKVISSQFQGKSKLEQHRMIYKVL 61

>pdb|1XS3|A Chain A, Solution Structure Analysis Of The Xc975 Protein Length = 80

Iteration: 1
 Score = 41.6 bits (96), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 20/52 (38%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
Query: 122 DGRHVSIDVIASAFEGQSAVNRQRMVYKAIWEELQSTVHAVDSMTTKTPAEA 173
           DG H    V++ AF G++ + R RMVY  + E +   +HA+  + T TP EA
Sbjct: 30  DGVHFEATVVSPAFVGKAPLARHRMVYATLGELMGGAIHAL-QLKTLTPDEA 80

>pdb|2DHM|A Chain A, Solution Structure Of The Bola Protein From Escherichia Coli Length = 107

Iteration: 1
 Score = 40.4 bits (93), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 16/42 (38%), Positives = 26/42 (61%)
Query: 121 GDGRHVSIDVIASAFEGQSAVNRQRMVYKAIWEELQSTVHAV 162
           G   H  + +++  F G+  +NR RM+Y  + EEL +TVHA+
Sbjct: 41  GSESHFKVVLVSDRFTGERFLNRHRMIYSTLAEELSTTVHAL 82

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	177
1xs3_A	80	Hypothetical protein XC975; BOLA-like, structural	2e-20
2kz0_A	76	BOLA family protein; BOLA protein family, human mo	2e-20
3tr3_A	82	BOLA; cellular processes, stress-induced, unknown	9e-20
1ny8_A	97	Protein YRBA; structure, autoassign, autostructure	2e-17
2dhm_A	107	Protein BOLA; stationary-phase, stress-induced, mo	3e-16
3o2e_A	105	BOLA-like protein; ssgcid, iodide, SAD, seattle st	4e-16
1v60_A	123	BOLA1, riken cDNA 1810037G04; stationary phase mor	8e-16
2kdn_A	108	Putative uncharacterized protein PFE0790C; solutio	8e-16
1v9j_A	113	BOLA-like protein riken cDNA 1110025L05; stationar	5e-15

>1xs3_A Hypothetical protein XC975; BOLA-like, structural genomics, AN integrated structural and functional genomic project, unknown function; NMR {Synthetic} Length = 80

 Score = 79.7 bits (197), Expect = 2e-20
 Identities = 24/74 (32%), Positives = 38/74 (51%), Gaps = 3/74 (4%)

Query: 100 SMENKIKEHLNAESVTVKDAYGDGRHVSIDVIASAFEGQSAVNRQRMVYKAIWEELQSTV 159
           ++   I+  L    V V+    DG H    V++ AF G++ + R RMVY  + E +   +
Sbjct: 10  TIRKLIESGLPEARVDVQG--EDGVHFEATVVSPAFVGKAPLARHRMVYATLGELMGGAI 67

Query: 160 HAVDSMTTKTPAEA 173
           HA+  + T TP EA
Sbjct: 68  HAL-QLKTLTPDEA 80

>2kz0_A BOLA family protein; BOLA protein family, human monocytotropic ehrlichiosis, STRE response, structural genomics; NMR {Ehrlichia chaffeensis} Length = 76

 Score = 79.3 bits (196), Expect = 2e-20
 Identities = 24/79 (30%), Positives = 37/79 (46%), Gaps = 8/79 (10%)

Query: 95  PSRMA----SMENKIKEHLNAESVTVKDAYGDGRHVSIDVIASAFEGQSAVNRQRMVYKA 150
           P  M      +E  I+       +TV    GD  H SI VI+S F+G+S + + RM+YK 
Sbjct: 1   PGSMTVTQSQLELLIRNAFPEAEITVTSLVGDNNHYSIKVISSQFQGKSKLEQHRMIYKV 60

Query: 151 IWEELQSTVHAVDSMTTKT 169
           +       +HA+  + T  
Sbjct: 61  LDGL---NIHAI-QIQTGC 75

>3tr3_A BOLA; cellular processes, stress-induced, unknown function; 2.46A {Coxiella burnetii} Length = 82

 Score = 77.8 bits (192), Expect = 9e-20
 Identities = 28/81 (34%), Positives = 41/81 (50%), Gaps = 7/81 (8%)

Query: 96  SRMASM----ENKIKEHLNAESVTVKDAYGDGRHVSIDVIASAFEGQSAVNRQRMVYKAI 151
           S         +  I+  L+   V   +  GDG H    V+   FEGQ+A+ R R+VY A+
Sbjct: 1   SNAMVTTHDIKQWIETGLSESRVISAE--GDGHHFEAVVLCPTFEGQTALTRHRLVYNAL 58

Query: 152 WEELQSTVHAVDSMTTKTPAE 172
              +QS +HA+ S+ T TP E
Sbjct: 59  GSHMQSDIHAL-SLKTYTPDE 78

>1ny8_A Protein YRBA; structure, autoassign, autostructure, NESG, structural genomics, PSI, protein structure initiative; NMR {Escherichia coli} SCOP: d.52.6.1 Length = 97

 Score = 72.4 bits (178), Expect = 2e-17
 Identities = 23/77 (29%), Positives = 38/77 (49%), Gaps = 5/77 (6%)

Query: 102 ENKIKEHLNAESVTVKDAYGDGRHVSIDVIASAFEGQSAVNRQRMVYKAIWEELQS-TVH 160
           ++ +   L+ + V V    GDG H  +  +   F+G S V +Q+ VY  + E +    +H
Sbjct: 12  QSVLMNALSLQEVHVS---GDGSHFQVIAVGELFDGMSRVKKQQTVYGPLMEYIADNRIH 68

Query: 161 AVDSMTTKTPAEADVKK 177
           AV S+   TPAE    +
Sbjct: 69  AV-SIKAYTPAEWARDR 84

>2dhm_A Protein BOLA; stationary-phase, stress-induced, morphogene, structural GEN NPPSFA; NMR {Escherichia coli str} Length = 107

 Score = 69.7 bits (171), Expect = 3e-16
 Identities = 25/95 (26%), Positives = 44/95 (46%), Gaps = 8/95 (8%)

Query: 90  AGSIDPSRMASMENKIKEHLNAESVTVKD-------AYGDGRHVSIDVIASAFEGQSAVN 142
           +GS        +E K++       + V D         G   H  + +++  F G+  +N
Sbjct: 3   SGSSGMMIRERIEEKLRAAFQPVFLEVVDESYRHNVPAGSESHFKVVLVSDRFTGERFLN 62

Query: 143 RQRMVYKAIWEELQSTVHAVDSMTTKTPAEADVKK 177
           R RM+Y  + EEL +TVHA+ ++ T T  E +  +
Sbjct: 63  RHRMIYSTLAEELSTTVHAL-ALHTYTIKEWEGLQ 96

>3o2e_A BOLA-like protein; ssgcid, iodide, SAD, seattle structural genom center for infectious disease, BOL like protein, unknown FU; 1.95A {Babesia bovis} Length = 105

 Score = 69.0 bits (169), Expect = 4e-16
 Identities = 22/78 (28%), Positives = 41/78 (52%), Gaps = 3/78 (3%)

Query: 96  SRMASMENKIKEHLNAESVTVKDA-YGDGRHVSIDVIASAFEGQSAVNRQRMVYKAIWEE 154
              + +E +++  L+ + + V D   G G   +  +++  FEG+  ++RQR+V  AI  E
Sbjct: 23  VSKSIVEERLRSMLSPQFLKVTDNSGGCGAAFNAYIVSQQFEGKGLLDRQRLVNSAIAAE 82

Query: 155 LQSTVHAVDSMTTKTPAE 172
           +   +HA  +M   TP E
Sbjct: 83  MPQ-IHAF-TMKCLTPGE 98

>1v60_A BOLA1, riken cDNA 1810037G04; stationary phase morphogene, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} Length = 123

 Score = 69.0 bits (169), Expect = 8e-16
 Identities = 31/112 (27%), Positives = 56/112 (50%), Gaps = 12/112 (10%)

Query: 68  GQSRFGRVGHRRFSTGATHVNDAGSIDPSRMASMENKIKEHLNAESVTVKD-------AY 120
                G       S G+     AG ++    A++  K+++ L+ E + +++         
Sbjct: 2   SSGSSGMATRSCVSRGSAGSAAAGPVE----AAIRAKLEQALSPEVLELRNESGGHAVPA 57

Query: 121 GDGRHVSIDVIASAFEGQSAVNRQRMVYKAIWEELQSTVHAVDSMTTKTPAE 172
           G   H  + V++S FEG S + R R+V++A+ EEL   VHA+ ++  KTPA+
Sbjct: 58  GSETHFRVAVVSSRFEGMSPLQRHRLVHEALSEELAGPVHAL-AIQAKTPAQ 108

>2kdn_A Putative uncharacterized protein PFE0790C; solution structure, ssgcid, seattle structural genomics center for infectious disease; NMR {Plasmodium falciparum} Length = 108

 Score = 68.6 bits (168), Expect = 8e-16
 Identities = 24/98 (24%), Positives = 42/98 (42%), Gaps = 3/98 (3%)

Query: 76  GHRRFSTGATHVNDAGSIDPSRMASMENKIKEHLNAESVTVKD-AYGDGRHVSIDVIASA 134
            H      +   N            +E+K+   L    + + D + G G      ++++ 
Sbjct: 4   SHHHHHHSSGRENLYFQGHMCIQKVIEDKLSSALKPTFLELVDKSCGCGTSFDAVIVSNN 63

Query: 135 FEGQSAVNRQRMVYKAIWEELQSTVHAVDSMTTKTPAE 172
           FE +  ++R R+V   + EELQ+ +HA  SM   TP E
Sbjct: 64  FEDKKLLDRHRLVNTILKEELQN-IHAF-SMKCHTPLE 99

>1v9j_A BOLA-like protein riken cDNA 1110025L05; stationary phase morphogene, stress-induced morphogene, structural genomics; NMR {Mus musculus} SCOP: d.52.6.1 Length = 113

 Score = 66.4 bits (162), Expect = 5e-15
 Identities = 27/111 (24%), Positives = 48/111 (43%), Gaps = 8/111 (7%)

Query: 73  GRVGHRRFSTGATHVNDAGSIDPSRMA----SMENKIKEHLNAESVTVKD--AYGDGRHV 126
           G   H    +    +   GS   + M      +  K+++ L AE V V+D          
Sbjct: 3   GSSHHHHHHSSGASLVPRGSEGAATMELSADYLREKLRQDLEAEHVEVEDTTLNRCATSF 62

Query: 127 SIDVIASAFEGQSAVNRQRMVYKAIWEELQSTVHAVDSMTTKTPAEADVKK 177
            + V+++ FEG+  + R R+V + + EEL   +HA     T TP +   ++
Sbjct: 63  RVLVVSAKFEGKPLLQRHRLVNECLAEELPH-IHAF-EQKTLTPEQWTRQR 111

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	177
2dhm_A	107	Protein BOLA; stationary-phase, stress-induced, mo	99.97
1v60_A	123	BOLA1, riken cDNA 1810037G04; stationary phase mor	99.97
3o2e_A	105	BOLA-like protein; ssgcid, iodide, SAD, seattle st	99.97
2kdn_A	108	Putative uncharacterized protein PFE0790C; solutio	99.97
1v9j_A	113	BOLA-like protein riken cDNA 1110025L05; stationar	99.96
3tr3_A	82	BOLA; cellular processes, stress-induced, unknown	99.96
1ny8_A	97	Protein YRBA; structure, autoassign, autostructure	99.95
1xs3_A	80	Hypothetical protein XC975; BOLA-like, structural	99.95
2kz0_A	76	BOLA family protein; BOLA protein family, human mo	99.95

>2dhm_A Protein BOLA; stationary-phase, stress-induced, morphogene, structural GEN NPPSFA; NMR {Escherichia coli str}

Probab=99.97  E-value=4.4e-32  Score=206.68  Aligned_cols=85  Identities=29%  Similarity=0.435  Sum_probs=80.2

Q ss_pred             CCCCchHHHHHHHHHHhhCCCCeEEEEecC-------CCCceEEEEEEcCccCCCCHHHHHHHHHHHHHHHHcCcccccc
Q 030420           91 GSIDPSRMASMENKIKEHLNAESVTVKDAY-------GDGRHVSIDVIASAFEGQSAVNRQRMVYKAIWEELQSTVHAVD  163 (177)
Q Consensus        91 ~~~~~p~~~~I~~kL~~~L~~~~leV~D~S-------G~GsHF~I~VVS~~F~GmS~V~RHR~Vy~~Lkdei~~~IHAL~  163 (177)
                      ++..|+++++|+++|+++|+|.+|+|+|+|       |||+||+|+|||+.|+||++|+|||+||++|+|+|+++|||| 
T Consensus         4 ~~~~m~~~~~I~~~L~~~l~p~~l~V~d~S~~H~~~~G~gsHf~v~IVS~~F~G~s~v~RHrlVy~~L~~ei~~~IHAL-   82 (107)
T 2dhm_A            4 GSSGMMIRERIEEKLRAAFQPVFLEVVDESYRHNVPAGSESHFKVVLVSDRFTGERFLNRHRMIYSTLAEELSTTVHAL-   82 (107)
T ss_dssp             SSCCCCHHHHHHHHHHHHTCCSCCEEEECCCCCSSCCCSCCCEEEEEECGGGSSCCSSHHHHHHHHHTHHHHHTTCCCC-
T ss_pred             CcCCCCHHHHHHHHHHhcCCCcEEEEEECcccccCCCCCCceEEEEEEchhhCCCCHHHHHHHHHHHHHHHHcCCcceE-
Confidence            345578999999999999999999999998       799999999999999999999999999999999999889999 


Q ss_pred             cccccChhhhhhc
Q 030420          164 SMTTKTPAEADVK  176 (177)
Q Consensus       164 sIkT~TP~Ew~kk  176 (177)
                      +|+|+||+||+++
T Consensus        83 si~t~TP~Ew~~~   95 (107)
T 2dhm_A           83 ALHTYTIKEWEGL   95 (107)
T ss_dssp             EEEEECHHHHHTS
T ss_pred             EEEecCHHHHHhc
Confidence            7999999999874

>1v60_A BOLA1, riken cDNA 1810037G04; stationary phase morphogene, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus}

Probab=99.97  E-value=8.8e-32  Score=209.62  Aligned_cols=99  Identities=28%  Similarity=0.417  Sum_probs=86.4

Q ss_pred             ceeeccee-ceeeccccccCCCCCCCchHHHHHHHHHHhhCCCCeEEEEecC-------CCCceEEEEEEcCccCCCCHH
Q 030420           70 SRFGRVGH-RRFSTGATHVNDAGSIDPSRMASMENKIKEHLNAESVTVKDAY-------GDGRHVSIDVIASAFEGQSAV  141 (177)
Q Consensus        70 ~r~~~~~~-R~~S~~~~~~~~~~~~~~p~~~~I~~kL~~~L~~~~leV~D~S-------G~GsHF~I~VVS~~F~GmS~V  141 (177)
                      +..+..|. |.+++.        ...++++++|+++|+++|+|.+|+|+|+|       |||+||+|+|||+.|+||++|
T Consensus         7 ~~~~~~~~~~~~~~~--------~~~~~~~~~I~~~L~~~l~p~~l~V~DeS~~H~~~~G~gsHf~v~IVS~~F~Gks~v   78 (123)
T 1v60_A            7 GMATRSCVSRGSAGS--------AAAGPVEAAIRAKLEQALSPEVLELRNESGGHAVPAGSETHFRVAVVSSRFEGMSPL   78 (123)
T ss_dssp             CCCCCCCCCCSCCCC--------SSSCHHHHHHHHHHHHHTCCSEEEEEECCCSSSCCTTCCSEEEEEEECGGGTTCCHH
T ss_pred             hhhhhhhhhhhccCC--------CCCCcHHHHHHHHHHhhCCCeEEEEEECcccccCCCCCCCeEEEEEEehhhCCCCHH
Confidence            34455554 554442        33478999999999999999999999998       789999999999999999999


Q ss_pred             HHHHHHHHHHHHHHcCcccccccccccChhhhhhcC
Q 030420          142 NRQRMVYKAIWEELQSTVHAVDSMTTKTPAEADVKK  177 (177)
Q Consensus       142 ~RHR~Vy~~Lkdei~~~IHAL~sIkT~TP~Ew~kkk  177 (177)
                      +|||+||++|+|+|+++|||| +|+|+||+||++++
T Consensus        79 ~RHRlVy~aL~~ei~~~IHAL-si~t~TP~Ew~~~~  113 (123)
T 1v60_A           79 QRHRLVHEALSEELAGPVHAL-AIQAKTPAQWRENP  113 (123)
T ss_dssp             HHHHHHHHHTHHHHTTTCSEE-EEEEECTTTTTTCC
T ss_pred             HHHHHHHHHHHHHHcCCccee-EeEecCHHHHHhcc
Confidence            999999999999999889999 79999999999753

>3o2e_A BOLA-like protein; ssgcid, iodide, SAD, seattle structural genom center for infectious disease, BOL like protein, unknown FU; 1.95A {Babesia bovis}

Probab=99.97  E-value=4.7e-32  Score=206.41  Aligned_cols=86  Identities=28%  Similarity=0.450  Sum_probs=79.7

Q ss_pred             CCCCCchHHHHHHHHHHhhCCCCeEEEEecC-CCCceEEEEEEcCccCCCCHHHHHHHHHHHHHHHHcCccccccccccc
Q 030420           90 AGSIDPSRMASMENKIKEHLNAESVTVKDAY-GDGRHVSIDVIASAFEGQSAVNRQRMVYKAIWEELQSTVHAVDSMTTK  168 (177)
Q Consensus        90 ~~~~~~p~~~~I~~kL~~~L~~~~leV~D~S-G~GsHF~I~VVS~~F~GmS~V~RHR~Vy~~Lkdei~~~IHAL~sIkT~  168 (177)
                      .|...|+++++|+++|+++|+|.+|+|+|+| |||+||+|+|||+.|+||++|+|||+||++|+|+|+ +|||| +|+|+
T Consensus        17 ~g~~~M~~~~~I~~kL~~~l~p~~l~V~D~S~g~gsHf~v~IVS~~F~Gks~v~RHRlVy~aL~~ei~-~IHAL-si~t~   94 (105)
T 3o2e_A           17 QGPGSMVSKSIVEERLRSMLSPQFLKVTDNSGGCGAAFNAYIVSQQFEGKGLLDRQRLVNSAIAAEMP-QIHAF-TMKCL   94 (105)
T ss_dssp             --CCCCCCHHHHHHHHHHHHCCSEEEEEECCBTTBEEEEEEEECGGGTTCCHHHHHHHHHHHTTTTGG-GEEEE-EEEEE
T ss_pred             CCCCcCcHHHHHHHHHHhhCCCCEEEEEECCCCCCcEEEEEEEchHhCCCCHHHHHHHHHHHHHHHHh-cCcee-EEEeC
Confidence            3455578999999999999999999999999 799999999999999999999999999999999999 69999 79999


Q ss_pred             ChhhhhhcC
Q 030420          169 TPAEADVKK  177 (177)
Q Consensus       169 TP~Ew~kkk  177 (177)
                      ||+||+++|
T Consensus        95 TP~Ew~~~~  103 (105)
T 3o2e_A           95 TPGEWEAKN  103 (105)
T ss_dssp             CHHHHHHTT
T ss_pred             CHHHHHHhh
Confidence            999999765

>2kdn_A Putative uncharacterized protein PFE0790C; solution structure, ssgcid, seattle structural genomics center for infectious disease; NMR {Plasmodium falciparum}

Probab=99.97  E-value=7.3e-31  Score=200.76  Aligned_cols=80  Identities=29%  Similarity=0.422  Sum_probs=76.6

Q ss_pred             chHHHHHHHHHHhhCCCCeEEEEecC-CCCceEEEEEEcCccCCCCHHHHHHHHHHHHHHHHcCcccccccccccChhhh
Q 030420           95 PSRMASMENKIKEHLNAESVTVKDAY-GDGRHVSIDVIASAFEGQSAVNRQRMVYKAIWEELQSTVHAVDSMTTKTPAEA  173 (177)
Q Consensus        95 ~p~~~~I~~kL~~~L~~~~leV~D~S-G~GsHF~I~VVS~~F~GmS~V~RHR~Vy~~Lkdei~~~IHAL~sIkT~TP~Ew  173 (177)
                      |...++|+++|+++|+|.+|+|+|+| |||+||+|+|||+.|+||++|+|||+||++|+|+|+. |||| +|+|+||+||
T Consensus        23 Mm~~~~I~~~L~~~l~p~~l~V~DeS~G~gsHF~v~IVS~~F~Gks~v~RHRlVy~aL~~e~~~-IHAL-si~t~TP~Ew  100 (108)
T 2kdn_A           23 MCIQKVIEDKLSSALKPTFLELVDKSCGCGTSFDAVIVSNNFEDKKLLDRHRLVNTILKEELQN-IHAF-SMKCHTPLEY  100 (108)
T ss_dssp             CSHHHHHHHHHHHHHCCSEEEEEECCCSSSCCEEEEEECGGGTTCCHHHHHHHHHHHHHHHGGG-CSCE-EEEEECHHHH
T ss_pred             CCcHHHHHHHHHhhCCCcEEEEEeCCCCCCceEEEEEEehhhCCCCHHHHHHHHHHHHHHHHhc-CceE-EEEecChHHH
Confidence            46889999999999999999999999 7999999999999999999999999999999999997 9999 7999999999


Q ss_pred             hhc
Q 030420          174 DVK  176 (177)
Q Consensus       174 ~kk  176 (177)
                      +++
T Consensus       101 ~~~  103 (108)
T 2kdn_A          101 DKL  103 (108)
T ss_dssp             HHH
T ss_pred             HHh
Confidence            864

>1v9j_A BOLA-like protein riken cDNA 1110025L05; stationary phase morphogene, stress-induced morphogene, structural genomics; NMR {Mus musculus} SCOP: d.52.6.1

Probab=99.96  E-value=9.5e-31  Score=201.40  Aligned_cols=80  Identities=28%  Similarity=0.435  Sum_probs=76.4

Q ss_pred             hHHHHHHHHHHhhCCCCeEEEEecC--CCCceEEEEEEcCccCCCCHHHHHHHHHHHHHHHHcCcccccccccccChhhh
Q 030420           96 SRMASMENKIKEHLNAESVTVKDAY--GDGRHVSIDVIASAFEGQSAVNRQRMVYKAIWEELQSTVHAVDSMTTKTPAEA  173 (177)
Q Consensus        96 p~~~~I~~kL~~~L~~~~leV~D~S--G~GsHF~I~VVS~~F~GmS~V~RHR~Vy~~Lkdei~~~IHAL~sIkT~TP~Ew  173 (177)
                      ...++|+++|+++|+|.+|+|+|+|  |||+||+|+|||+.|+||++|+|||+||++|+|+|+. |||| +|+|+||+||
T Consensus        30 m~~~~I~~~L~~~l~p~~l~V~DeS~~G~gsHF~v~IVS~~F~Gks~V~RHRlVy~aL~eei~~-IHAL-si~t~TP~Ew  107 (113)
T 1v9j_A           30 LSADYLREKLRQDLEAEHVEVEDTTLNRCATSFRVLVVSAKFEGKPLLQRHRLVNECLAEELPH-IHAF-EQKTLTPEQW  107 (113)
T ss_dssp             SCHHHHHHHHHHHHTCSEEEEEECCSSSSCCCEEEEEECSHHHHSCHHHHHHHHHHHTTTTGGG-CSSE-EEEEECHHHH
T ss_pred             CcHHHHHHHHHhhCCCcEEEEEeccCCCCCceEEEEEEchhhCCCCHHHHHHHHHHHHHHHHhc-CceE-EEEecChHHH
Confidence            4779999999999999999999999  8999999999999999999999999999999999997 9999 7999999999


Q ss_pred             hhcC
Q 030420          174 DVKK  177 (177)
Q Consensus       174 ~kkk  177 (177)
                      ++++
T Consensus       108 ~~~~  111 (113)
T 1v9j_A          108 TRQR  111 (113)
T ss_dssp             HHSC
T ss_pred             HHhh
Confidence            9754

>3tr3_A BOLA; cellular processes, stress-induced, unknown function; 2.46A {Coxiella burnetii}

Probab=99.96  E-value=1.7e-29  Score=184.45  Aligned_cols=78  Identities=35%  Similarity=0.555  Sum_probs=73.3

Q ss_pred             chHHHHHHHHHHhhCCCCeEEEEecCCCCceEEEEEEcCccCCCCHHHHHHHHHHHHHHHHcCcccccccccccChhhhh
Q 030420           95 PSRMASMENKIKEHLNAESVTVKDAYGDGRHVSIDVIASAFEGQSAVNRQRMVYKAIWEELQSTVHAVDSMTTKTPAEAD  174 (177)
Q Consensus        95 ~p~~~~I~~kL~~~L~~~~leV~D~SG~GsHF~I~VVS~~F~GmS~V~RHR~Vy~~Lkdei~~~IHAL~sIkT~TP~Ew~  174 (177)
                      |...++|+++|+++|+|.+|+|.+  |||+||+|+|||+.|+||++|+|||+||++|+++|+++|||| +|+|+||+||+
T Consensus         4 Mm~~~~I~~~L~~~l~~~~l~V~~--g~gshf~v~IVS~~F~G~~~v~Rhr~V~~~L~~~~~~~iHAL-~i~t~Tp~Ew~   80 (82)
T 3tr3_A            4 MVTTHDIKQWIETGLSESRVISAE--GDGHHFEAVVLCPTFEGQTALTRHRLVYNALGSHMQSDIHAL-SLKTYTPDEYE   80 (82)
T ss_dssp             CCCHHHHHHHHHHHSTTCEEEEEE--ECSSEEEEEEECGGGTTCCHHHHHHHHHHHTGGGGTTTCSEE-EEEEECHHHHH
T ss_pred             cchHHHHHHHHHhhCCCcEEEEEc--CCCCeEEEEEEchhhCCCCHHHHHHHHHHHHHHHHcCCcceE-EEEeCCHHHHh
Confidence            356789999999999999999984  699999999999999999999999999999999998789999 79999999997


Q ss_pred             h
Q 030420          175 V  175 (177)
Q Consensus       175 k  175 (177)
                      +
T Consensus        81 ~   81 (82)
T 3tr3_A           81 R   81 (82)
T ss_dssp             C
T ss_pred             c
Confidence            5

>1ny8_A Protein YRBA; structure, autoassign, autostructure, NESG, structural genomics, PSI, protein structure initiative; NMR {Escherichia coli} SCOP: d.52.6.1

Probab=99.95  E-value=9.8e-29  Score=185.59  Aligned_cols=76  Identities=30%  Similarity=0.500  Sum_probs=72.1

Q ss_pred             HHHHHHHHHHhhCCCCeEEEEecCCCCceEEEEEEcCccCCCCHHHHHHHHHHHHHHHHc-CcccccccccccChhhhhh
Q 030420           97 RMASMENKIKEHLNAESVTVKDAYGDGRHVSIDVIASAFEGQSAVNRQRMVYKAIWEELQ-STVHAVDSMTTKTPAEADV  175 (177)
Q Consensus        97 ~~~~I~~kL~~~L~~~~leV~D~SG~GsHF~I~VVS~~F~GmS~V~RHR~Vy~~Lkdei~-~~IHAL~sIkT~TP~Ew~k  175 (177)
                      ..++|+++|+++|+|.+|+|.   |||+||+|+|||+.|+||++|+|||+||++|+|+|+ ++|||| +|+|+||+||++
T Consensus         7 ~~~~I~~~L~~~l~p~~l~V~---G~gsHf~v~IVS~~F~Gks~v~RHRlVy~aL~~e~~~~~IHAL-si~t~TP~Ew~~   82 (97)
T 1ny8_A            7 ENNEIQSVLMNALSLQEVHVS---GDGSHFQVIAVGELFDGMSRVKKQQTVYGPLMEYIADNRIHAV-SIKAYTPAEWAR   82 (97)
T ss_dssp             CCHHHHHHHHHHHCCSEEEEE---ESSSEEEEEEESSTTSSSCHHHHHHHHHTTTHHHHHHHTTSEE-EEEECCHHHHHH
T ss_pred             CHHHHHHHHHhhCCCcEEEEE---cCCceEEEEEEChhhCCCCHHHHHHHHHHHHHHHHccCCcceE-EeEecChHHHHh
Confidence            347999999999999999998   999999999999999999999999999999999999 479999 799999999986


Q ss_pred             c
Q 030420          176 K  176 (177)
Q Consensus       176 k  176 (177)
                      +
T Consensus        83 ~   83 (97)
T 1ny8_A           83 D   83 (97)
T ss_dssp             H
T ss_pred             h
Confidence            4

>1xs3_A Hypothetical protein XC975; BOLA-like, structural genomics, AN integrated structural and functional genomic project, unknown function; NMR {Synthetic}

Probab=99.95  E-value=1.3e-28  Score=178.78  Aligned_cols=74  Identities=34%  Similarity=0.561  Sum_probs=71.1

Q ss_pred             hHHHHHHHHHHhhCCCCeEEEEecCC-CCceEEEEEEcCccCCCCHHHHHHHHHHHHHHHHcCcccccccccccChhhh
Q 030420           96 SRMASMENKIKEHLNAESVTVKDAYG-DGRHVSIDVIASAFEGQSAVNRQRMVYKAIWEELQSTVHAVDSMTTKTPAEA  173 (177)
Q Consensus        96 p~~~~I~~kL~~~L~~~~leV~D~SG-~GsHF~I~VVS~~F~GmS~V~RHR~Vy~~Lkdei~~~IHAL~sIkT~TP~Ew  173 (177)
                      ...++|+++|+++|+|.+|+|+   | ||+||+|+|||+.|+||++|+|||+||++|+|+|+++|||| +|+|+||+||
T Consensus         6 m~~~~I~~~L~~~l~~~~l~V~---G~~gsHf~v~IVS~~F~G~~~v~RHrlVy~~L~~e~~~~iHAL-si~t~Tp~E~   80 (80)
T 1xs3_A            6 LDAETIRKLIESGLPEARVDVQ---GEDGVHFEATVVSPAFVGKAPLARHRMVYATLGELMGGAIHAL-QLKTLTPDEA   80 (80)
T ss_dssp             CHHHHHHHHHHHHSSSCEEEEE---SCTTSCCEEEEECGGGCSSCCHHHHHHHHHHTTSTTTTCCSCC-EEEEECGGGC
T ss_pred             CCHHHHHHHHHhhCCCcEEEEE---cCCCCEEEEEEEchhhCCCcHHHHHHHHHHHHHHHHcCCcceE-EEEecCCCCC
Confidence            4679999999999999999998   6 99999999999999999999999999999999999889999 7999999998

>2kz0_A BOLA family protein; BOLA protein family, human monocytotropic ehrlichiosis, STRE response, structural genomics; NMR {Ehrlichia chaffeensis}

Probab=99.95  E-value=1.1e-28  Score=177.93  Aligned_cols=70  Identities=31%  Similarity=0.526  Sum_probs=67.7

Q ss_pred             HHHHHHHHHHhhCCCCeEEEEecCCCCceEEEEEEcCccCCCCHHHHHHHHHHHHHHHHcCcccccccccccCh
Q 030420           97 RMASMENKIKEHLNAESVTVKDAYGDGRHVSIDVIASAFEGQSAVNRQRMVYKAIWEELQSTVHAVDSMTTKTP  170 (177)
Q Consensus        97 ~~~~I~~kL~~~L~~~~leV~D~SG~GsHF~I~VVS~~F~GmS~V~RHR~Vy~~Lkdei~~~IHAL~sIkT~TP  170 (177)
                      ..++|+++|+++|+|.+|+|+|+||||+||+|+|||+.|+||++|+|||+||++|+|+   +|||| +|+|+||
T Consensus         7 ~~~~I~~~L~~~l~~~~l~V~d~SG~g~Hf~v~IVS~~F~G~s~v~rHr~Vy~~L~~e---~iHAL-si~t~tp   76 (76)
T 2kz0_A            7 TQSQLELLIRNAFPEAEITVTSLVGDNNHYSIKVISSQFQGKSKLEQHRMIYKVLDGL---NIHAI-QIQTGCK   76 (76)
T ss_dssp             TTHHHHHHHHHHCTTEEEEEECCSSTTSCCEEEEEEGGGTTCCHHHHHHHHHHHTTTS---CCCSS-SEEECCC
T ss_pred             cHHHHHHHHHhhCCCcEEEEEECCCCccEEEEEEEchHhCCCCHHHHHHHHHHHhccC---CceEE-EEEEeCC
Confidence            5689999999999999999999999999999999999999999999999999999999   59999 7999997

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	177
d1ny8a_	97	d.52.6.1 (A:) Hypothetical protein YrbA {Escherich	2e-18
d1v9ja_	113	d.52.6.1 (A:) BolA-like protein {Mouse (Mus muscul	2e-16

>d1ny8a_ d.52.6.1 (A:) Hypothetical protein YrbA {Escherichia coli [TaxId: 562]} Length = 97

class: Alpha and beta proteins (a+b)
fold: Alpha-lytic protease prodomain-like
superfamily: BolA-like
family: BolA-like
domain: Hypothetical protein YrbA
species: Escherichia coli [TaxId: 562]

 Score = 73.7 bits (181), Expect = 2e-18
 Identities = 25/85 (29%), Positives = 41/85 (48%), Gaps = 5/85 (5%)

Query: 94  DPSRMASMENKIKEHLNAESVTVKDAYGDGRHVSIDVIASAFEGQSAVNRQRMVYKAIWE 153
           DP     +++ +   L+ + V V    GDG H  +  +   F+G S V +Q+ VY  + E
Sbjct: 4   DPMENNEIQSVLMNALSLQEVHVS---GDGSHFQVIAVGELFDGMSRVKKQQTVYGPLME 60

Query: 154 ELQS-TVHAVDSMTTKTPAEADVKK 177
            +    +HAV S+   TPAE    +
Sbjct: 61  YIADNRIHAV-SIKAYTPAEWARDR 84

>d1v9ja_ d.52.6.1 (A:) BolA-like protein {Mouse (Mus musculus) [TaxId: 10090]} Length = 113

class: Alpha and beta proteins (a+b)
fold: Alpha-lytic protease prodomain-like
superfamily: BolA-like
family: BolA-like
domain: BolA-like protein
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 69.1 bits (169), Expect = 2e-16
 Identities = 27/111 (24%), Positives = 48/111 (43%), Gaps = 8/111 (7%)

Query: 73  GRVGHRRFSTGATHVNDAGSIDPSRMA----SMENKIKEHLNAESVTVKD--AYGDGRHV 126
           G   H    +    +   GS   + M      +  K+++ L AE V V+D          
Sbjct: 3   GSSHHHHHHSSGASLVPRGSEGAATMELSADYLREKLRQDLEAEHVEVEDTTLNRCATSF 62

Query: 127 SIDVIASAFEGQSAVNRQRMVYKAIWEELQSTVHAVDSMTTKTPAEADVKK 177
            + V+++ FEG+  + R R+V + + EEL   +HA     T TP +   ++
Sbjct: 63  RVLVVSAKFEGKPLLQRHRLVNECLAEELPH-IHAF-EQKTLTPEQWTRQR 111

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	177
d1v9ja_	113	BolA-like protein {Mouse (Mus musculus) [TaxId: 10	99.96
d1ny8a_	97	Hypothetical protein YrbA {Escherichia coli [TaxId	99.94
d1ylqa1	90	Putative nucleotidyltransferase AF0614 {Archaeon A	96.1

>d1v9ja_ d.52.6.1 (A:) BolA-like protein {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Alpha-lytic protease prodomain-like
superfamily: BolA-like
family: BolA-like
domain: BolA-like protein
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.96  E-value=2.9e-30  Score=196.82  Aligned_cols=81  Identities=27%  Similarity=0.427  Sum_probs=76.6

Q ss_pred             chHHHHHHHHHHhhCCCCeEEEEecC--CCCceEEEEEEcCccCCCCHHHHHHHHHHHHHHHHcCcccccccccccChhh
Q 030420           95 PSRMASMENKIKEHLNAESVTVKDAY--GDGRHVSIDVIASAFEGQSAVNRQRMVYKAIWEELQSTVHAVDSMTTKTPAE  172 (177)
Q Consensus        95 ~p~~~~I~~kL~~~L~~~~leV~D~S--G~GsHF~I~VVS~~F~GmS~V~RHR~Vy~~Lkdei~~~IHAL~sIkT~TP~E  172 (177)
                      ++.+++|+++|++.|+|.+|+|+|+|  |||+||+|+|||+.|+||++|+|||+||++|+|+|++ |||| +|+|+||+|
T Consensus        29 ~~~~e~I~~kL~~~~~~~~leV~D~S~~h~G~Hf~i~IvS~~F~g~s~v~rHr~Vy~~L~~ei~~-iHAl-si~t~Tp~E  106 (113)
T d1v9ja_          29 ELSADYLREKLRQDLEAEHVEVEDTTLNRCATSFRVLVVSAKFEGKPLLQRHRLVNECLAEELPH-IHAF-EQKTLTPEQ  106 (113)
T ss_dssp             SSCHHHHHHHHHHHHTCSEEEEEECCSSSSCCCEEEEEECSHHHHSCHHHHHHHHHHHTTTTGGG-CSSE-EEEEECHHH
T ss_pred             cccHHHHHHHHHhhCCCcEEEEEecCCCCCCceEEEEEEeccccCCchhHHHHhHHHHHHHHHhc-ceee-EEEeCCHHH
Confidence            44578999999999999999999999  7999999999999999999999999999999999985 9999 799999999


Q ss_pred             hhhcC
Q 030420          173 ADVKK  177 (177)
Q Consensus       173 w~kkk  177 (177)
                      |+++|
T Consensus       107 w~~~~  111 (113)
T d1v9ja_         107 WTRQR  111 (113)
T ss_dssp             HHHSC
T ss_pred             HHHhh
Confidence            99875

>d1ny8a_ d.52.6.1 (A:) Hypothetical protein YrbA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Alpha-lytic protease prodomain-like
superfamily: BolA-like
family: BolA-like
domain: Hypothetical protein YrbA
species: Escherichia coli [TaxId: 562]

Probab=99.94  E-value=1.1e-27  Score=177.97  Aligned_cols=75  Identities=31%  Similarity=0.504  Sum_probs=71.1

Q ss_pred             HHHHHHHHHhhCCCCeEEEEecCCCCceEEEEEEcCccCCCCHHHHHHHHHHHHHHHHcC-cccccccccccChhhhhhc
Q 030420           98 MASMENKIKEHLNAESVTVKDAYGDGRHVSIDVIASAFEGQSAVNRQRMVYKAIWEELQS-TVHAVDSMTTKTPAEADVK  176 (177)
Q Consensus        98 ~~~I~~kL~~~L~~~~leV~D~SG~GsHF~I~VVS~~F~GmS~V~RHR~Vy~~Lkdei~~-~IHAL~sIkT~TP~Ew~kk  176 (177)
                      .++|+++|++.|++.+|+|.   |+|+||+|+|||+.|+||++|+|||+||++|+|+|++ .|||| +|+|+||+||+++
T Consensus         8 ~~eI~~~L~~~l~~~~v~V~---g~g~hf~i~IvS~~F~g~s~v~RHr~Vy~~L~~~i~~g~IHAl-sikt~Tp~Ew~~~   83 (97)
T d1ny8a_           8 NNEIQSVLMNALSLQEVHVS---GDGSHFQVIAVGELFDGMSRVKKQQTVYGPLMEYIADNRIHAV-SIKAYTPAEWARD   83 (97)
T ss_dssp             CHHHHHHHHHHHCCSEEEEE---ESSSEEEEEEESSTTSSSCHHHHHHHHHTTTHHHHHHHTTSEE-EEEECCHHHHHHH
T ss_pred             HHHHHHHHHhhCCCcEEEEe---CCCcEEEEEEEcHHhCCCCHHHHHHHHHHHHHHHHcCCCceee-EeEeCCHHHHHHh
Confidence            37899999999999999997   8999999999999999999999999999999999986 69999 8999999999865

>d1ylqa1 d.218.1.5 (A:1-90) Putative nucleotidyltransferase AF0614 {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a+b)
fold: Nucleotidyltransferase
superfamily: Nucleotidyltransferase
family: Catalytic subunit of bi-partite nucleotidyltransferase
domain: Putative nucleotidyltransferase AF0614
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=96.10  E-value=0.014  Score=40.59  Aligned_cols=71  Identities=10%  Similarity=0.149  Sum_probs=55.1

Q ss_pred             HHHHHHHHhhCCCCeEEEEecC--C----CCceEEEEEEcCccCCCCHHHHHHHHHHHHHHHHcCcccccccccccChhh
Q 030420           99 ASMENKIKEHLNAESVTVKDAY--G----DGRHVSIDVIASAFEGQSAVNRQRMVYKAIWEELQSTVHAVDSMTTKTPAE  172 (177)
Q Consensus        99 ~~I~~kL~~~L~~~~leV~D~S--G----~GsHF~I~VVS~~F~GmS~V~RHR~Vy~~Lkdei~~~IHAL~sIkT~TP~E  172 (177)
                      ++|++.+++.++++.|-+.=--  |    .+|-+.|.||++.+.+  ..+|.+.+..++....   -|-+ .+..+||+|
T Consensus         2 ~~i~e~ik~~~~~~kViLFGS~ArG~~~~~~SDiDllVV~~~~~~--~~~r~~~~~~~~~~~~---~~pv-d~~v~tpee   75 (90)
T d1ylqa1           2 KEIKEITKKDVQDAEIYLYGSVVEGDYSIGLSDIDVAIVSDVFED--RNRKLEFFGKITKKFF---DSPF-EFHILTKKE   75 (90)
T ss_dssp             HHHHHHHHHHCTTCEEEEESHHHHCCSSSCCCSEEEEEECGGGGS--HHHHHHHHHHHHHHTT---TCSE-EEEEECHHH
T ss_pred             HHHHHHHHHHCCCcEEEEECccccCCCCCCCCccEEEEEeCCCCC--HHHHHHHHHHHHhhcc---CCCe-EEEEcCHHH
Confidence            5899999999999999887110  2    2589999999999964  6788888888887533   2457 488889999


Q ss_pred             hhh
Q 030420          173 ADV  175 (177)
Q Consensus       173 w~k  175 (177)
                      |++
T Consensus        76 fe~   78 (90)
T d1ylqa1          76 WKM   78 (90)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            974