Citrus Sinensis ID: 030429
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 177 | 2.2.26 [Sep-21-2011] | |||||||
| Q6NZW8 | 186 | ADP-ribosylation factor-l | no | no | 0.971 | 0.924 | 0.656 | 1e-66 | |
| Q66HA6 | 186 | ADP-ribosylation factor-l | yes | no | 0.971 | 0.924 | 0.645 | 2e-66 | |
| Q9CQW2 | 186 | ADP-ribosylation factor-l | yes | no | 0.971 | 0.924 | 0.645 | 2e-66 | |
| Q9NVJ2 | 186 | ADP-ribosylation factor-l | yes | no | 0.971 | 0.924 | 0.645 | 2e-66 | |
| Q2KI07 | 186 | ADP-ribosylation factor-l | yes | no | 0.971 | 0.924 | 0.639 | 7e-66 | |
| Q5R6E7 | 186 | ADP-ribosylation factor-l | yes | no | 0.971 | 0.924 | 0.639 | 2e-65 | |
| Q8VEH3 | 186 | ADP-ribosylation factor-l | no | no | 0.971 | 0.924 | 0.633 | 2e-65 | |
| Q4R4S4 | 186 | ADP-ribosylation factor-l | N/A | no | 0.971 | 0.924 | 0.633 | 3e-65 | |
| Q96BM9 | 186 | ADP-ribosylation factor-l | no | no | 0.971 | 0.924 | 0.633 | 3e-65 | |
| Q5ZKQ8 | 186 | ADP-ribosylation factor-l | no | no | 0.971 | 0.924 | 0.633 | 4e-65 |
| >sp|Q6NZW8|AR8BA_DANRE ADP-ribosylation factor-like protein 8B-A OS=Danio rerio GN=arl8ba PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 252 bits (643), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 113/172 (65%), Positives = 144/172 (83%)
Query: 6 SLFFKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLG 65
SLF+K+EMEL+L+GLQ +GKT+ VN IA+G +SEDMIPTVGFNMRKVTKGNVTIK+WD+G
Sbjct: 14 SLFWKEEMELTLVGLQYSGKTTFVNVIASGQFSEDMIPTVGFNMRKVTKGNVTIKIWDIG 73
Query: 66 GQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKID 125
GQ RFR+MWERYCRGV+AI+Y+VDAADR+ V +R+ELH LL KP L GIP+LVLGNK D
Sbjct: 74 GQPRFRSMWERYCRGVNAIVYMVDAADREKVEASRNELHNLLDKPQLQGIPVLVLGNKRD 133
Query: 126 KSEALSKQALVDQLGLESITDREVCCYMISCKDSINIDAVIDWLIKHSKTAK 177
AL ++ L++++ L +I DRE+CCY ISCK+ NID + WLI+HSK+ +
Sbjct: 134 LPNALDEKQLIEKMNLAAIQDREICCYSISCKEKDNIDITLQWLIQHSKSRR 185
|
May play a role in lysosomes motility. Alternatively, may play a role in chromosome segregation. Danio rerio (taxid: 7955) |
| >sp|Q66HA6|ARL8B_RAT ADP-ribosylation factor-like protein 8B OS=Rattus norvegicus GN=Arl8b PE=2 SV=1 | Back alignment and function description |
|---|
Score = 251 bits (640), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 111/172 (64%), Positives = 144/172 (83%)
Query: 6 SLFFKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLG 65
SLF+K+EMEL+L+GLQ +GKT+ VN IA+G +SEDMIPTVGFNMRKVTKGNVTIK+WD+G
Sbjct: 14 SLFWKEEMELTLVGLQYSGKTTFVNVIASGQFSEDMIPTVGFNMRKVTKGNVTIKIWDIG 73
Query: 66 GQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKID 125
GQ RFR+MWERYCRGV+AI+Y++DAADR+ + +R+ELH LL KP L GIP+LVLGNK D
Sbjct: 74 GQPRFRSMWERYCRGVNAIVYMIDAADREKIEASRNELHNLLDKPQLQGIPVLVLGNKRD 133
Query: 126 KSEALSKQALVDQLGLESITDREVCCYMISCKDSINIDAVIDWLIKHSKTAK 177
AL ++ L++++ L +I DRE+CCY ISCK+ NID + WLI+HSK+ +
Sbjct: 134 LPNALDEKQLIEKMNLSAIQDREICCYSISCKEKDNIDITLQWLIQHSKSRR 185
|
May play a role in lysosomes motility. Alternatively, may play a role in chromosome segregation. Rattus norvegicus (taxid: 10116) |
| >sp|Q9CQW2|ARL8B_MOUSE ADP-ribosylation factor-like protein 8B OS=Mus musculus GN=Arl8b PE=2 SV=1 | Back alignment and function description |
|---|
Score = 251 bits (640), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 111/172 (64%), Positives = 144/172 (83%)
Query: 6 SLFFKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLG 65
SLF+K+EMEL+L+GLQ +GKT+ VN IA+G +SEDMIPTVGFNMRKVTKGNVTIK+WD+G
Sbjct: 14 SLFWKEEMELTLVGLQYSGKTTFVNVIASGQFSEDMIPTVGFNMRKVTKGNVTIKIWDIG 73
Query: 66 GQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKID 125
GQ RFR+MWERYCRGV+AI+Y++DAADR+ + +R+ELH LL KP L GIP+LVLGNK D
Sbjct: 74 GQPRFRSMWERYCRGVNAIVYMIDAADREKIEASRNELHNLLDKPQLQGIPVLVLGNKRD 133
Query: 126 KSEALSKQALVDQLGLESITDREVCCYMISCKDSINIDAVIDWLIKHSKTAK 177
AL ++ L++++ L +I DRE+CCY ISCK+ NID + WLI+HSK+ +
Sbjct: 134 LPNALDEKQLIEKMNLSAIQDREICCYSISCKEKDNIDITLQWLIQHSKSRR 185
|
May play a role in lysosomes motility. Alternatively, may play a role in chromosome segregation. Mus musculus (taxid: 10090) |
| >sp|Q9NVJ2|ARL8B_HUMAN ADP-ribosylation factor-like protein 8B OS=Homo sapiens GN=ARL8B PE=1 SV=1 | Back alignment and function description |
|---|
Score = 251 bits (640), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 111/172 (64%), Positives = 144/172 (83%)
Query: 6 SLFFKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLG 65
SLF+K+EMEL+L+GLQ +GKT+ VN IA+G +SEDMIPTVGFNMRKVTKGNVTIK+WD+G
Sbjct: 14 SLFWKEEMELTLVGLQYSGKTTFVNVIASGQFSEDMIPTVGFNMRKVTKGNVTIKIWDIG 73
Query: 66 GQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKID 125
GQ RFR+MWERYCRGV+AI+Y++DAADR+ + +R+ELH LL KP L GIP+LVLGNK D
Sbjct: 74 GQPRFRSMWERYCRGVNAIVYMIDAADREKIEASRNELHNLLDKPQLQGIPVLVLGNKRD 133
Query: 126 KSEALSKQALVDQLGLESITDREVCCYMISCKDSINIDAVIDWLIKHSKTAK 177
AL ++ L++++ L +I DRE+CCY ISCK+ NID + WLI+HSK+ +
Sbjct: 134 LPNALDEKQLIEKMNLSAIQDREICCYSISCKEKDNIDITLQWLIQHSKSRR 185
|
May play a role in lysosome motility (PubMed:16537643). May play a role in chromosome segregation (PubMed:15331635). Homo sapiens (taxid: 9606) |
| >sp|Q2KI07|ARL8B_BOVIN ADP-ribosylation factor-like protein 8B OS=Bos taurus GN=ARL8B PE=2 SV=1 | Back alignment and function description |
|---|
Score = 249 bits (636), Expect = 7e-66, Method: Compositional matrix adjust.
Identities = 110/172 (63%), Positives = 144/172 (83%)
Query: 6 SLFFKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLG 65
SLF+K+EMEL+L+GLQ +GKT+ VN IA+G +SEDMIPTVGFNMRKVTKGNVTIK+WD+G
Sbjct: 14 SLFWKEEMELTLVGLQYSGKTTFVNVIASGQFSEDMIPTVGFNMRKVTKGNVTIKIWDIG 73
Query: 66 GQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKID 125
GQ RF++MWERYCRGV+AI+Y++DAADR+ + +R+ELH LL KP L GIP+LVLGNK D
Sbjct: 74 GQPRFQSMWERYCRGVNAIVYMIDAADREKIEASRNELHNLLDKPQLQGIPVLVLGNKRD 133
Query: 126 KSEALSKQALVDQLGLESITDREVCCYMISCKDSINIDAVIDWLIKHSKTAK 177
AL ++ L++++ L +I DRE+CCY ISCK+ NID + WLI+HSK+ +
Sbjct: 134 LPNALDEKQLIEKMNLSAIQDREICCYSISCKEKDNIDITLQWLIQHSKSRR 185
|
May play a role in lysosomes motility. Alternatively, may play a role in chromosome segregation. Bos taurus (taxid: 9913) |
| >sp|Q5R6E7|ARL8B_PONAB ADP-ribosylation factor-like protein 8B OS=Pongo abelii GN=ARL8B PE=2 SV=1 | Back alignment and function description |
|---|
Score = 248 bits (632), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 110/172 (63%), Positives = 143/172 (83%)
Query: 6 SLFFKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLG 65
SLF+K+EMEL+L+GLQ +GKT+ VN IA+G +SEDMIPTVGFNMRKVTKGNVTIK+WD+G
Sbjct: 14 SLFWKEEMELTLVGLQYSGKTTFVNVIASGQFSEDMIPTVGFNMRKVTKGNVTIKIWDIG 73
Query: 66 GQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKID 125
GQ RFR+MWERYCRGV+AI+Y++DAA R+ + +R+ELH LL KP L GIP+LVLGNK D
Sbjct: 74 GQPRFRSMWERYCRGVNAIVYMIDAAYREKIEASRNELHNLLDKPQLQGIPVLVLGNKRD 133
Query: 126 KSEALSKQALVDQLGLESITDREVCCYMISCKDSINIDAVIDWLIKHSKTAK 177
AL ++ L++++ L +I DRE+CCY ISCK+ NID + WLI+HSK+ +
Sbjct: 134 LPNALDEKQLIEKMNLSAIQDREICCYSISCKEKDNIDITLQWLIQHSKSRR 185
|
May play a role in lysosomes motility. Alternatively, may play a role in chromosome segregation. Pongo abelii (taxid: 9601) |
| >sp|Q8VEH3|ARL8A_MOUSE ADP-ribosylation factor-like protein 8A OS=Mus musculus GN=Arl8a PE=2 SV=1 | Back alignment and function description |
|---|
Score = 248 bits (632), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 109/172 (63%), Positives = 145/172 (84%)
Query: 6 SLFFKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLG 65
+LF+K+EMEL+L+GLQ +GKT+ VN IA+G ++EDMIPTVGFNMRK+TKGNVTIKLWD+G
Sbjct: 14 ALFWKEEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRKITKGNVTIKLWDIG 73
Query: 66 GQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKID 125
GQ RFR+MWERYCRGVSAI+Y+VDAAD++ + +++ELH LL KP L GIP+LVLGNK D
Sbjct: 74 GQPRFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRD 133
Query: 126 KSEALSKQALVDQLGLESITDREVCCYMISCKDSINIDAVIDWLIKHSKTAK 177
+ AL ++ L++++ L +I DRE+CCY ISCK+ NID + WLI+HSK+ +
Sbjct: 134 LAGALDEKELIEKMNLSAIQDREICCYSISCKEKDNIDITLQWLIQHSKSRR 185
|
May play a role in lysosomes motility. Alternatively, may play a role in chromosome segregation. Mus musculus (taxid: 10090) |
| >sp|Q4R4S4|ARL8B_MACFA ADP-ribosylation factor-like protein 8B OS=Macaca fascicularis GN=ARL8B PE=2 SV=1 | Back alignment and function description |
|---|
Score = 247 bits (631), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 109/172 (63%), Positives = 144/172 (83%)
Query: 6 SLFFKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLG 65
SLF+K+EMEL+L+GLQ +GKT+ VN IA+G +SEDMIPTVGFNMRKVTKGNVTIK+WD+G
Sbjct: 14 SLFWKEEMELTLVGLQYSGKTTFVNVIASGQFSEDMIPTVGFNMRKVTKGNVTIKIWDIG 73
Query: 66 GQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKID 125
GQ R+R+MWERYCRGV+AI+Y++DAADR+ + +R+ELH LL KP L GIP+LVLGNK D
Sbjct: 74 GQPRYRSMWERYCRGVNAIVYMIDAADREKIEASRNELHNLLDKPQLQGIPVLVLGNKRD 133
Query: 126 KSEALSKQALVDQLGLESITDREVCCYMISCKDSINIDAVIDWLIKHSKTAK 177
AL ++ L++++ L +I DRE+CCY ISCK+ NID + WLI++SK+ +
Sbjct: 134 LPNALDEKQLIEKMNLSAIQDREICCYSISCKEKDNIDITLQWLIQYSKSRR 185
|
May play a role in lysosomes motility. Alternatively, may play a role in chromosome segregation. Macaca fascicularis (taxid: 9541) |
| >sp|Q96BM9|ARL8A_HUMAN ADP-ribosylation factor-like protein 8A OS=Homo sapiens GN=ARL8A PE=1 SV=1 | Back alignment and function description |
|---|
Score = 247 bits (630), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 109/172 (63%), Positives = 144/172 (83%)
Query: 6 SLFFKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLG 65
+LF+K+EMEL+L+GLQ +GKT+ VN IA+G ++EDMIPTVGFNMRK+TKGNVTIKLWD+G
Sbjct: 14 ALFWKEEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRKITKGNVTIKLWDIG 73
Query: 66 GQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKID 125
GQ RFR+MWERYCRGVSAI+Y+VDAAD++ + +++ELH LL KP L GIP+LVLGNK D
Sbjct: 74 GQPRFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRD 133
Query: 126 KSEALSKQALVDQLGLESITDREVCCYMISCKDSINIDAVIDWLIKHSKTAK 177
AL ++ L++++ L +I DRE+CCY ISCK+ NID + WLI+HSK+ +
Sbjct: 134 LPGALDEKELIEKMNLSAIQDREICCYSISCKEKDNIDITLQWLIQHSKSRR 185
|
May play a role in lysosomes motility. Alternatively, may play a role in chromosome segregation. Homo sapiens (taxid: 9606) |
| >sp|Q5ZKQ8|ARL8A_CHICK ADP-ribosylation factor-like protein 8A OS=Gallus gallus GN=ARL8A PE=2 SV=1 | Back alignment and function description |
|---|
Score = 246 bits (629), Expect = 4e-65, Method: Compositional matrix adjust.
Identities = 109/172 (63%), Positives = 144/172 (83%)
Query: 6 SLFFKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLG 65
+LF+K+EMEL+L+GLQ +GKT+ VN IA+G ++EDMIPTVGFNMRK+TKGNVTIKLWD+G
Sbjct: 14 ALFWKEEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRKITKGNVTIKLWDIG 73
Query: 66 GQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKID 125
GQ RFR+MWERYCRGVSAI+Y+VDAAD++ + +++ELH LL KP L GIP+LVLGNK D
Sbjct: 74 GQPRFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRD 133
Query: 126 KSEALSKQALVDQLGLESITDREVCCYMISCKDSINIDAVIDWLIKHSKTAK 177
AL ++ L++++ L +I DRE+CCY ISCK+ NID + WLI+HSK+ +
Sbjct: 134 LPGALDEKELIEKMNLSAIQDREICCYSISCKEKDNIDITLQWLIQHSKSRR 185
|
May play a role in lysosomes motility. Alternatively, may play a role in chromosome segregation. Gallus gallus (taxid: 9031) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 177 | ||||||
| 255580381 | 184 | ADP-ribosylation factor, putative [Ricin | 0.971 | 0.934 | 0.953 | 6e-93 | |
| 388516671 | 184 | unknown [Lotus japonicus] | 0.971 | 0.934 | 0.947 | 1e-91 | |
| 371501276 | 184 | ADP-ribosylation factor-like 8d [Nicotia | 0.971 | 0.934 | 0.936 | 2e-91 | |
| 356553280 | 184 | PREDICTED: ADP-ribosylation factor-like | 0.971 | 0.934 | 0.936 | 6e-91 | |
| 351722553 | 184 | uncharacterized protein LOC100305570 [Gl | 0.971 | 0.934 | 0.936 | 1e-90 | |
| 357491973 | 184 | ADP-ribosylation factor-like protein [Me | 0.966 | 0.929 | 0.941 | 2e-90 | |
| 224069270 | 188 | predicted protein [Populus trichocarpa] | 0.966 | 0.909 | 0.935 | 2e-90 | |
| 18421676 | 184 | ADP-ribosylation factor-like A1A [Arabid | 0.966 | 0.929 | 0.923 | 4e-90 | |
| 357137842 | 184 | PREDICTED: ADP-ribosylation factor-like | 0.966 | 0.929 | 0.929 | 7e-90 | |
| 226532776 | 184 | ADP-ribosylation factor-like protein 8A | 0.971 | 0.934 | 0.924 | 2e-89 |
| >gi|255580381|ref|XP_002531018.1| ADP-ribosylation factor, putative [Ricinus communis] gi|223529416|gb|EEF31378.1| ADP-ribosylation factor, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 344 bits (883), Expect = 6e-93, Method: Compositional matrix adjust.
Identities = 164/172 (95%), Positives = 170/172 (98%)
Query: 6 SLFFKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLG 65
SLFFKQEMELSL+GLQNAGKTSLVN +ATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLG
Sbjct: 13 SLFFKQEMELSLVGLQNAGKTSLVNAVATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLG 72
Query: 66 GQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKID 125
GQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELH+L++KPSLSGIPLLVLGNKID
Sbjct: 73 GQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHDLVVKPSLSGIPLLVLGNKID 132
Query: 126 KSEALSKQALVDQLGLESITDREVCCYMISCKDSINIDAVIDWLIKHSKTAK 177
KSEALSKQALVDQLGLESITDREVCCYMISCKDS+NID VIDWLIKHSKTAK
Sbjct: 133 KSEALSKQALVDQLGLESITDREVCCYMISCKDSVNIDVVIDWLIKHSKTAK 184
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|388516671|gb|AFK46397.1| unknown [Lotus japonicus] | Back alignment and taxonomy information |
|---|
Score = 340 bits (873), Expect = 1e-91, Method: Compositional matrix adjust.
Identities = 163/172 (94%), Positives = 168/172 (97%)
Query: 6 SLFFKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLG 65
SLFFKQEMELSL+GLQNAGKTSLVN+IATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLG
Sbjct: 13 SLFFKQEMELSLVGLQNAGKTSLVNSIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLG 72
Query: 66 GQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKID 125
GQRRFRTMWERYCRGVSAI+YVVDAADRDSVPI+RSELHEL KPSLSGIPLLVLGNKID
Sbjct: 73 GQRRFRTMWERYCRGVSAIVYVVDAADRDSVPISRSELHELFTKPSLSGIPLLVLGNKID 132
Query: 126 KSEALSKQALVDQLGLESITDREVCCYMISCKDSINIDAVIDWLIKHSKTAK 177
KSEALSKQALVDQLGLESI DREVCCYMISCKDS+NIDAVIDWLIKHS TAK
Sbjct: 133 KSEALSKQALVDQLGLESIKDREVCCYMISCKDSVNIDAVIDWLIKHSTTAK 184
|
Source: Lotus japonicus Species: Lotus japonicus Genus: Lotus Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|371501276|dbj|BAL44265.1| ADP-ribosylation factor-like 8d [Nicotiana tabacum] | Back alignment and taxonomy information |
|---|
Score = 340 bits (871), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 161/172 (93%), Positives = 168/172 (97%)
Query: 6 SLFFKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLG 65
SLFFKQEMELSL+GLQNAGKTSLVN IATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLG
Sbjct: 13 SLFFKQEMELSLVGLQNAGKTSLVNAIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLG 72
Query: 66 GQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKID 125
GQRRFRTMWERYCRGVSAILYVVDAADRDS+PI R+ELHELL KPSLSGIPLL+LGNKID
Sbjct: 73 GQRRFRTMWERYCRGVSAILYVVDAADRDSIPITRTELHELLKKPSLSGIPLLILGNKID 132
Query: 126 KSEALSKQALVDQLGLESITDREVCCYMISCKDSINIDAVIDWLIKHSKTAK 177
KSEALS+QALVDQLGL+S TDREVCCYMISCKDS+NIDAVIDWLIKHSKTAK
Sbjct: 133 KSEALSQQALVDQLGLDSTTDREVCCYMISCKDSVNIDAVIDWLIKHSKTAK 184
|
Source: Nicotiana tabacum Species: Nicotiana tabacum Genus: Nicotiana Family: Solanaceae Order: Solanales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356553280|ref|XP_003544985.1| PREDICTED: ADP-ribosylation factor-like protein 8B-A-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 338 bits (866), Expect = 6e-91, Method: Compositional matrix adjust.
Identities = 161/172 (93%), Positives = 168/172 (97%)
Query: 6 SLFFKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLG 65
SLFFKQEMELSL+GLQNAGKTSLVN IATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLG
Sbjct: 13 SLFFKQEMELSLVGLQNAGKTSLVNAIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLG 72
Query: 66 GQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKID 125
GQRRFR+MWERYCRGVSAI+YVVDAADRDSVPI+RSELH+LL KPSLSGIPLLVLGNKID
Sbjct: 73 GQRRFRSMWERYCRGVSAIVYVVDAADRDSVPISRSELHDLLTKPSLSGIPLLVLGNKID 132
Query: 126 KSEALSKQALVDQLGLESITDREVCCYMISCKDSINIDAVIDWLIKHSKTAK 177
KSEALSKQALVDQLGLESI DREVCCYMISCKDS+N+D VIDWLIKHSKTAK
Sbjct: 133 KSEALSKQALVDQLGLESIKDREVCCYMISCKDSVNLDVVIDWLIKHSKTAK 184
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|351722553|ref|NP_001237248.1| uncharacterized protein LOC100305570 [Glycine max] gi|255625945|gb|ACU13317.1| unknown [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 337 bits (864), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 161/172 (93%), Positives = 167/172 (97%)
Query: 6 SLFFKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLG 65
SLFFKQEMELSL+GLQNAGKTSLVN IATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLG
Sbjct: 13 SLFFKQEMELSLVGLQNAGKTSLVNAIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLG 72
Query: 66 GQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKID 125
GQRRFR+MWERYCRGVSAI+YVVDAADRDSVPI+RSELH+LL KPSLS IPLLVLGNKID
Sbjct: 73 GQRRFRSMWERYCRGVSAIVYVVDAADRDSVPISRSELHDLLTKPSLSAIPLLVLGNKID 132
Query: 126 KSEALSKQALVDQLGLESITDREVCCYMISCKDSINIDAVIDWLIKHSKTAK 177
KSEALSKQALVDQLGLESI DREVCCYMISCKDS+NID VIDWLIKHSKTAK
Sbjct: 133 KSEALSKQALVDQLGLESIKDREVCCYMISCKDSVNIDVVIDWLIKHSKTAK 184
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357491973|ref|XP_003616274.1| ADP-ribosylation factor-like protein [Medicago truncatula] gi|355517609|gb|AES99232.1| ADP-ribosylation factor-like protein [Medicago truncatula] gi|388507258|gb|AFK41695.1| unknown [Medicago truncatula] gi|388510186|gb|AFK43159.1| unknown [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 336 bits (862), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 161/171 (94%), Positives = 167/171 (97%)
Query: 6 SLFFKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLG 65
SLFFKQEMELSL+GLQNAGKTSLVN+IATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLG
Sbjct: 13 SLFFKQEMELSLVGLQNAGKTSLVNSIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLG 72
Query: 66 GQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKID 125
GQRRFRTMWERYCRGVSAI+YVVDAADRDSVPI RSEL+ELL KPSL+GIPLLVLGNKID
Sbjct: 73 GQRRFRTMWERYCRGVSAIVYVVDAADRDSVPITRSELNELLTKPSLNGIPLLVLGNKID 132
Query: 126 KSEALSKQALVDQLGLESITDREVCCYMISCKDSINIDAVIDWLIKHSKTA 176
KSEALSKQALVDQLGLESI DREVCCYMISCKDS+NID VIDWLIKHSKTA
Sbjct: 133 KSEALSKQALVDQLGLESIKDREVCCYMISCKDSVNIDVVIDWLIKHSKTA 183
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224069270|ref|XP_002302942.1| predicted protein [Populus trichocarpa] gi|222844668|gb|EEE82215.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 336 bits (861), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 160/171 (93%), Positives = 166/171 (97%)
Query: 6 SLFFKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLG 65
SLFFKQEMELSL+GLQNAGKTSLVN+IATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLG
Sbjct: 13 SLFFKQEMELSLVGLQNAGKTSLVNSIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLG 72
Query: 66 GQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKID 125
GQRRFRTMWERYCRGVSAILYVVDAADRDSVP++RSELH+LL KPSLSGIPLLV+GNKID
Sbjct: 73 GQRRFRTMWERYCRGVSAILYVVDAADRDSVPLSRSELHDLLTKPSLSGIPLLVVGNKID 132
Query: 126 KSEALSKQALVDQLGLESITDREVCCYMISCKDSINIDAVIDWLIKHSKTA 176
K EA SKQALVDQLGLESITDREVCCYMISCKDS NID VIDWLIKHSKTA
Sbjct: 133 KPEAFSKQALVDQLGLESITDREVCCYMISCKDSTNIDIVIDWLIKHSKTA 183
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|18421676|ref|NP_568553.1| ADP-ribosylation factor-like A1A [Arabidopsis thaliana] gi|17065164|gb|AAL32736.1| ADP-ribosylation factor-like protein [Arabidopsis thaliana] gi|21387117|gb|AAM47962.1| ADP-ribosylation factor-like protein [Arabidopsis thaliana] gi|21553410|gb|AAM62503.1| ADP-ribosylation factor-like protein [Arabidopsis thaliana] gi|332006836|gb|AED94219.1| ADP-ribosylation factor-like A1A [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 335 bits (859), Expect = 4e-90, Method: Compositional matrix adjust.
Identities = 158/171 (92%), Positives = 169/171 (98%)
Query: 6 SLFFKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLG 65
SLFFKQEMELSL+GLQNAGKTSLVN IATGGYSEDMIPTVGFNMRKVTKGNVTIK+WDLG
Sbjct: 13 SLFFKQEMELSLVGLQNAGKTSLVNAIATGGYSEDMIPTVGFNMRKVTKGNVTIKIWDLG 72
Query: 66 GQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKID 125
GQRRFRTMWERYCRGVSAI+YV+DAADRDSVPI+RSEL++LL KPSL+GIPLL+LGNKID
Sbjct: 73 GQRRFRTMWERYCRGVSAIVYVIDAADRDSVPISRSELNDLLTKPSLNGIPLLILGNKID 132
Query: 126 KSEALSKQALVDQLGLESITDREVCCYMISCKDSINIDAVIDWLIKHSKTA 176
KSEALSKQALVDQLGLES+TDREVCCYMISCKDSINIDAVIDWLIKHS+TA
Sbjct: 133 KSEALSKQALVDQLGLESVTDREVCCYMISCKDSINIDAVIDWLIKHSRTA 183
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357137842|ref|XP_003570508.1| PREDICTED: ADP-ribosylation factor-like protein 8A-like [Brachypodium distachyon] | Back alignment and taxonomy information |
|---|
Score = 334 bits (857), Expect = 7e-90, Method: Compositional matrix adjust.
Identities = 159/171 (92%), Positives = 167/171 (97%)
Query: 6 SLFFKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLG 65
SLFFKQEMELSL+GLQNAGKTSLVN+IATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLG
Sbjct: 13 SLFFKQEMELSLVGLQNAGKTSLVNSIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLG 72
Query: 66 GQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKID 125
GQRRFRTMWERYCRGVSAILYVVDAADRDSVPIA+SELH+LL K SL+GIPLL+LGNKID
Sbjct: 73 GQRRFRTMWERYCRGVSAILYVVDAADRDSVPIAKSELHDLLTKQSLAGIPLLILGNKID 132
Query: 126 KSEALSKQALVDQLGLESITDREVCCYMISCKDSINIDAVIDWLIKHSKTA 176
KSEALSKQALVDQLGLESI DREVCCYMISCKD++NID VIDWLIKHSKTA
Sbjct: 133 KSEALSKQALVDQLGLESIKDREVCCYMISCKDTVNIDVVIDWLIKHSKTA 183
|
Source: Brachypodium distachyon Species: Brachypodium distachyon Genus: Brachypodium Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|226532776|ref|NP_001147766.1| ADP-ribosylation factor-like protein 8A [Zea mays] gi|242062626|ref|XP_002452602.1| hypothetical protein SORBIDRAFT_04g028860 [Sorghum bicolor] gi|195613610|gb|ACG28635.1| ADP-ribosylation factor-like protein 8A [Zea mays] gi|195620620|gb|ACG32140.1| ADP-ribosylation factor-like protein 8A [Zea mays] gi|241932433|gb|EES05578.1| hypothetical protein SORBIDRAFT_04g028860 [Sorghum bicolor] gi|413923887|gb|AFW63819.1| ADP-ribosylation factor-like protein 8A [Zea mays] | Back alignment and taxonomy information |
|---|
Score = 333 bits (854), Expect = 2e-89, Method: Compositional matrix adjust.
Identities = 159/172 (92%), Positives = 166/172 (96%)
Query: 6 SLFFKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLG 65
SLFFKQEMELSL+GLQNAGKTSLVN +ATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLG
Sbjct: 13 SLFFKQEMELSLVGLQNAGKTSLVNAVATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLG 72
Query: 66 GQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKID 125
GQRRFRTMWERYCRGVSAILYVVDAADRDSVPIA+SELH+LL K SL+GIPLLVLGNKID
Sbjct: 73 GQRRFRTMWERYCRGVSAILYVVDAADRDSVPIAKSELHDLLTKQSLAGIPLLVLGNKID 132
Query: 126 KSEALSKQALVDQLGLESITDREVCCYMISCKDSINIDAVIDWLIKHSKTAK 177
KSEALSKQALVDQLGLE I DREVCCYMISCKDS+NID VIDWLIKHS+TAK
Sbjct: 133 KSEALSKQALVDQLGLELIKDREVCCYMISCKDSVNIDVVIDWLIKHSRTAK 184
|
Source: Zea mays Species: Zea mays Genus: Zea Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 177 | ||||||
| TAIR|locus:2151734 | 184 | ARLA1A "ADP-ribosylation facto | 0.966 | 0.929 | 0.923 | 3.1e-83 | |
| TAIR|locus:2097355 | 184 | ARLA1C "ADP-ribosylation facto | 0.960 | 0.923 | 0.817 | 3.6e-73 | |
| TAIR|locus:2158591 | 184 | ARLA1D "ADP-ribosylation facto | 0.966 | 0.929 | 0.807 | 5.9e-73 | |
| ZFIN|ZDB-GENE-030131-9370 | 186 | arl8ba "ADP-ribosylation facto | 0.971 | 0.924 | 0.656 | 5.5e-61 | |
| UNIPROTKB|F1P0Z7 | 186 | ARL8B "Uncharacterized protein | 0.971 | 0.924 | 0.651 | 7.1e-61 | |
| UNIPROTKB|F2Z4I5 | 186 | ARL8B "ADP-ribosylation factor | 0.971 | 0.924 | 0.645 | 7.1e-61 | |
| UNIPROTKB|E2RE13 | 186 | ARL8B "Uncharacterized protein | 0.971 | 0.924 | 0.645 | 7.1e-61 | |
| UNIPROTKB|Q9NVJ2 | 186 | ARL8B "ADP-ribosylation factor | 0.971 | 0.924 | 0.645 | 7.1e-61 | |
| MGI|MGI:1914416 | 186 | Arl8b "ADP-ribosylation factor | 0.971 | 0.924 | 0.645 | 7.1e-61 | |
| RGD|1562830 | 186 | Arl8b "ADP-ribosylation factor | 0.971 | 0.924 | 0.645 | 7.1e-61 |
| TAIR|locus:2151734 ARLA1A "ADP-ribosylation factor-like A1A" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 834 (298.6 bits), Expect = 3.1e-83, P = 3.1e-83
Identities = 158/171 (92%), Positives = 169/171 (98%)
Query: 6 SLFFKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLG 65
SLFFKQEMELSL+GLQNAGKTSLVN IATGGYSEDMIPTVGFNMRKVTKGNVTIK+WDLG
Sbjct: 13 SLFFKQEMELSLVGLQNAGKTSLVNAIATGGYSEDMIPTVGFNMRKVTKGNVTIKIWDLG 72
Query: 66 GQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKID 125
GQRRFRTMWERYCRGVSAI+YV+DAADRDSVPI+RSEL++LL KPSL+GIPLL+LGNKID
Sbjct: 73 GQRRFRTMWERYCRGVSAIVYVIDAADRDSVPISRSELNDLLTKPSLNGIPLLILGNKID 132
Query: 126 KSEALSKQALVDQLGLESITDREVCCYMISCKDSINIDAVIDWLIKHSKTA 176
KSEALSKQALVDQLGLES+TDREVCCYMISCKDSINIDAVIDWLIKHS+TA
Sbjct: 133 KSEALSKQALVDQLGLESVTDREVCCYMISCKDSINIDAVIDWLIKHSRTA 183
|
|
| TAIR|locus:2097355 ARLA1C "ADP-ribosylation factor-like A1C" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 739 (265.2 bits), Expect = 3.6e-73, P = 3.6e-73
Identities = 139/170 (81%), Positives = 157/170 (92%)
Query: 6 SLFFKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLG 65
SLFFKQEMELSLIGLQNAGKTSLVN +ATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLG
Sbjct: 13 SLFFKQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLG 72
Query: 66 GQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKID 125
GQ RFR+MWERYCR VSAI+YVVDAAD D++ +++SELH+LL K SL+GIPLLVLGNKID
Sbjct: 73 GQPRFRSMWERYCRAVSAIVYVVDAADPDNLSVSKSELHDLLSKTSLNGIPLLVLGNKID 132
Query: 126 KSEALSKQALVDQLGLESITDREVCCYMISCKDSINIDAVIDWLIKHSKT 175
K ALSK+AL D++GL S+TDREVCC+MISCK+S NID VIDWL+KHSK+
Sbjct: 133 KPGALSKEALTDEMGLTSLTDREVCCFMISCKNSTNIDQVIDWLVKHSKS 182
|
|
| TAIR|locus:2158591 ARLA1D "ADP-ribosylation factor-like A1D" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 737 (264.5 bits), Expect = 5.9e-73, P = 5.9e-73
Identities = 138/171 (80%), Positives = 159/171 (92%)
Query: 6 SLFFKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLG 65
SLFFKQEMELSLIGLQNAGKTSLVN +ATGGYSEDMIPTVGFNMRKVTKG+VTIKLWDLG
Sbjct: 13 SLFFKQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVTKGSVTIKLWDLG 72
Query: 66 GQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKID 125
GQ RFR+MWERYCR VSAI+YVVDAAD D++ +++SELH+LL K SL+GIPLLVLGNKID
Sbjct: 73 GQPRFRSMWERYCRSVSAIVYVVDAADPDNLSVSKSELHDLLSKTSLNGIPLLVLGNKID 132
Query: 126 KSEALSKQALVDQLGLESITDREVCCYMISCKDSINIDAVIDWLIKHSKTA 176
K ALSK+AL D++GL+S+TDREVCC+MISCK+S NID VIDWL+KHSK++
Sbjct: 133 KPGALSKEALTDEMGLKSLTDREVCCFMISCKNSTNIDQVIDWLVKHSKSS 183
|
|
| ZFIN|ZDB-GENE-030131-9370 arl8ba "ADP-ribosylation factor-like 8Ba" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 624 (224.7 bits), Expect = 5.5e-61, P = 5.5e-61
Identities = 113/172 (65%), Positives = 144/172 (83%)
Query: 6 SLFFKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLG 65
SLF+K+EMEL+L+GLQ +GKT+ VN IA+G +SEDMIPTVGFNMRKVTKGNVTIK+WD+G
Sbjct: 14 SLFWKEEMELTLVGLQYSGKTTFVNVIASGQFSEDMIPTVGFNMRKVTKGNVTIKIWDIG 73
Query: 66 GQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKID 125
GQ RFR+MWERYCRGV+AI+Y+VDAADR+ V +R+ELH LL KP L GIP+LVLGNK D
Sbjct: 74 GQPRFRSMWERYCRGVNAIVYMVDAADREKVEASRNELHNLLDKPQLQGIPVLVLGNKRD 133
Query: 126 KSEALSKQALVDQLGLESITDREVCCYMISCKDSINIDAVIDWLIKHSKTAK 177
AL ++ L++++ L +I DRE+CCY ISCK+ NID + WLI+HSK+ +
Sbjct: 134 LPNALDEKQLIEKMNLAAIQDREICCYSISCKEKDNIDITLQWLIQHSKSRR 185
|
|
| UNIPROTKB|F1P0Z7 ARL8B "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 623 (224.4 bits), Expect = 7.1e-61, P = 7.1e-61
Identities = 112/172 (65%), Positives = 144/172 (83%)
Query: 6 SLFFKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLG 65
SLF+K+EMEL+L+GLQ +GKT+ VN IA+G +SEDMIPTVGFNMRKVTKGNVTIK+WD+G
Sbjct: 14 SLFWKEEMELTLVGLQYSGKTTFVNVIASGQFSEDMIPTVGFNMRKVTKGNVTIKIWDIG 73
Query: 66 GQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKID 125
GQ RFR+MWERYCRGV+AI+Y+VDAADR+ + +R+ELH LL KP L GIP+LVLGNK D
Sbjct: 74 GQPRFRSMWERYCRGVNAIVYMVDAADREKIEASRNELHNLLDKPQLQGIPVLVLGNKRD 133
Query: 126 KSEALSKQALVDQLGLESITDREVCCYMISCKDSINIDAVIDWLIKHSKTAK 177
AL ++ L++++ L +I DRE+CCY ISCK+ NID + WLI+HSK+ +
Sbjct: 134 LPNALDEKQLIEKMNLAAIQDREICCYSISCKEKDNIDITLQWLIQHSKSRR 185
|
|
| UNIPROTKB|F2Z4I5 ARL8B "ADP-ribosylation factor-like protein 8B" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 623 (224.4 bits), Expect = 7.1e-61, P = 7.1e-61
Identities = 111/172 (64%), Positives = 144/172 (83%)
Query: 6 SLFFKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLG 65
SLF+K+EMEL+L+GLQ +GKT+ VN IA+G +SEDMIPTVGFNMRKVTKGNVTIK+WD+G
Sbjct: 14 SLFWKEEMELTLVGLQYSGKTTFVNVIASGQFSEDMIPTVGFNMRKVTKGNVTIKIWDIG 73
Query: 66 GQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKID 125
GQ RFR+MWERYCRGV+AI+Y++DAADR+ + +R+ELH LL KP L GIP+LVLGNK D
Sbjct: 74 GQPRFRSMWERYCRGVNAIVYMIDAADREKIEASRNELHNLLDKPQLQGIPVLVLGNKRD 133
Query: 126 KSEALSKQALVDQLGLESITDREVCCYMISCKDSINIDAVIDWLIKHSKTAK 177
AL ++ L++++ L +I DRE+CCY ISCK+ NID + WLI+HSK+ +
Sbjct: 134 LPNALDEKQLIEKMNLSAIQDREICCYSISCKEKDNIDITLQWLIQHSKSRR 185
|
|
| UNIPROTKB|E2RE13 ARL8B "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 623 (224.4 bits), Expect = 7.1e-61, P = 7.1e-61
Identities = 111/172 (64%), Positives = 144/172 (83%)
Query: 6 SLFFKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLG 65
SLF+K+EMEL+L+GLQ +GKT+ VN IA+G +SEDMIPTVGFNMRKVTKGNVTIK+WD+G
Sbjct: 14 SLFWKEEMELTLVGLQYSGKTTFVNVIASGQFSEDMIPTVGFNMRKVTKGNVTIKIWDIG 73
Query: 66 GQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKID 125
GQ RFR+MWERYCRGV+AI+Y++DAADR+ + +R+ELH LL KP L GIP+LVLGNK D
Sbjct: 74 GQPRFRSMWERYCRGVNAIVYMIDAADREKIEASRNELHNLLDKPQLQGIPVLVLGNKRD 133
Query: 126 KSEALSKQALVDQLGLESITDREVCCYMISCKDSINIDAVIDWLIKHSKTAK 177
AL ++ L++++ L +I DRE+CCY ISCK+ NID + WLI+HSK+ +
Sbjct: 134 LPNALDEKQLIEKMNLSAIQDREICCYSISCKEKDNIDITLQWLIQHSKSRR 185
|
|
| UNIPROTKB|Q9NVJ2 ARL8B "ADP-ribosylation factor-like protein 8B" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 623 (224.4 bits), Expect = 7.1e-61, P = 7.1e-61
Identities = 111/172 (64%), Positives = 144/172 (83%)
Query: 6 SLFFKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLG 65
SLF+K+EMEL+L+GLQ +GKT+ VN IA+G +SEDMIPTVGFNMRKVTKGNVTIK+WD+G
Sbjct: 14 SLFWKEEMELTLVGLQYSGKTTFVNVIASGQFSEDMIPTVGFNMRKVTKGNVTIKIWDIG 73
Query: 66 GQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKID 125
GQ RFR+MWERYCRGV+AI+Y++DAADR+ + +R+ELH LL KP L GIP+LVLGNK D
Sbjct: 74 GQPRFRSMWERYCRGVNAIVYMIDAADREKIEASRNELHNLLDKPQLQGIPVLVLGNKRD 133
Query: 126 KSEALSKQALVDQLGLESITDREVCCYMISCKDSINIDAVIDWLIKHSKTAK 177
AL ++ L++++ L +I DRE+CCY ISCK+ NID + WLI+HSK+ +
Sbjct: 134 LPNALDEKQLIEKMNLSAIQDREICCYSISCKEKDNIDITLQWLIQHSKSRR 185
|
|
| MGI|MGI:1914416 Arl8b "ADP-ribosylation factor-like 8B" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 623 (224.4 bits), Expect = 7.1e-61, P = 7.1e-61
Identities = 111/172 (64%), Positives = 144/172 (83%)
Query: 6 SLFFKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLG 65
SLF+K+EMEL+L+GLQ +GKT+ VN IA+G +SEDMIPTVGFNMRKVTKGNVTIK+WD+G
Sbjct: 14 SLFWKEEMELTLVGLQYSGKTTFVNVIASGQFSEDMIPTVGFNMRKVTKGNVTIKIWDIG 73
Query: 66 GQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKID 125
GQ RFR+MWERYCRGV+AI+Y++DAADR+ + +R+ELH LL KP L GIP+LVLGNK D
Sbjct: 74 GQPRFRSMWERYCRGVNAIVYMIDAADREKIEASRNELHNLLDKPQLQGIPVLVLGNKRD 133
Query: 126 KSEALSKQALVDQLGLESITDREVCCYMISCKDSINIDAVIDWLIKHSKTAK 177
AL ++ L++++ L +I DRE+CCY ISCK+ NID + WLI+HSK+ +
Sbjct: 134 LPNALDEKQLIEKMNLSAIQDREICCYSISCKEKDNIDITLQWLIQHSKSRR 185
|
|
| RGD|1562830 Arl8b "ADP-ribosylation factor-like 8B" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 623 (224.4 bits), Expect = 7.1e-61, P = 7.1e-61
Identities = 111/172 (64%), Positives = 144/172 (83%)
Query: 6 SLFFKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLG 65
SLF+K+EMEL+L+GLQ +GKT+ VN IA+G +SEDMIPTVGFNMRKVTKGNVTIK+WD+G
Sbjct: 14 SLFWKEEMELTLVGLQYSGKTTFVNVIASGQFSEDMIPTVGFNMRKVTKGNVTIKIWDIG 73
Query: 66 GQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKID 125
GQ RFR+MWERYCRGV+AI+Y++DAADR+ + +R+ELH LL KP L GIP+LVLGNK D
Sbjct: 74 GQPRFRSMWERYCRGVNAIVYMIDAADREKIEASRNELHNLLDKPQLQGIPVLVLGNKRD 133
Query: 126 KSEALSKQALVDQLGLESITDREVCCYMISCKDSINIDAVIDWLIKHSKTAK 177
AL ++ L++++ L +I DRE+CCY ISCK+ NID + WLI+HSK+ +
Sbjct: 134 LPNALDEKQLIEKMNLSAIQDREICCYSISCKEKDNIDITLQWLIQHSKSRR 185
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q9VHV5 | ARL8_DROME | No assigned EC number | 0.6411 | 0.9604 | 0.9139 | yes | no |
| Q5R6E7 | ARL8B_PONAB | No assigned EC number | 0.6395 | 0.9717 | 0.9247 | yes | no |
| Q9NVJ2 | ARL8B_HUMAN | No assigned EC number | 0.6453 | 0.9717 | 0.9247 | yes | no |
| Q4R4S4 | ARL8B_MACFA | No assigned EC number | 0.6337 | 0.9717 | 0.9247 | N/A | no |
| Q9CQW2 | ARL8B_MOUSE | No assigned EC number | 0.6453 | 0.9717 | 0.9247 | yes | no |
| Q54R04 | ARL8_DICDI | No assigned EC number | 0.6046 | 0.9717 | 0.9297 | yes | no |
| Q66HA6 | ARL8B_RAT | No assigned EC number | 0.6453 | 0.9717 | 0.9247 | yes | no |
| Q2KI07 | ARL8B_BOVIN | No assigned EC number | 0.6395 | 0.9717 | 0.9247 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
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 | BRADI3G56930.1 | annotation not avaliable (188 aa) | |||||||||
(Brachypodium distachyon) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 177 | |||
| cd04159 | 159 | cd04159, Arl10_like, Arf-like 9 (Arl9) and 10 (Arl | 1e-101 | |
| cd00878 | 158 | cd00878, Arf_Arl, ADP-ribosylation factor(Arf)/Arf | 2e-58 | |
| pfam00025 | 174 | pfam00025, Arf, ADP-ribosylation factor family | 2e-45 | |
| cd00879 | 191 | cd00879, Sar1, Sar1 is an essential component of C | 1e-38 | |
| cd04155 | 174 | cd04155, Arl3, Arf-like 3 (Arl3) GTPase | 3e-37 | |
| cd04151 | 158 | cd04151, Arl1, ADP ribosylation factor 1 (Arf1) | 8e-36 | |
| cd04149 | 168 | cd04149, Arf6, ADP ribosylation factor 6 (Arf6) | 4e-35 | |
| cd04157 | 162 | cd04157, Arl6, Arf-like 6 (Arl6) GTPase | 5e-35 | |
| smart00177 | 175 | smart00177, ARF, ARF-like small GTPases; ARF, ADP- | 8e-34 | |
| cd04162 | 164 | cd04162, Arl9_Arfrp2_like, Arf-like 9 (Arl9)/Arfrp | 1e-33 | |
| cd04160 | 168 | cd04160, Arfrp1, Arf-related protein 1 (Arfrp1) | 5e-33 | |
| cd04153 | 174 | cd04153, Arl5_Arl8, Arf-like 5 (Arl5) and 8 (Arl8) | 5e-32 | |
| cd04154 | 173 | cd04154, Arl2, Arf-like 2 (Arl2) GTPase | 1e-31 | |
| PLN00223 | 181 | PLN00223, PLN00223, ADP-ribosylation factor; Provi | 4e-31 | |
| cd04150 | 159 | cd04150, Arf1_5_like, ADP-ribosylation factor-1 (A | 1e-30 | |
| PTZ00133 | 182 | PTZ00133, PTZ00133, ADP-ribosylation factor; Provi | 2e-30 | |
| cd04161 | 167 | cd04161, Arl2l1_Arl13_like, Arl2-like protein 1 (A | 5e-28 | |
| cd04156 | 160 | cd04156, ARLTS1, Arf-like tumor suppressor gene 1 | 7e-28 | |
| cd04152 | 183 | cd04152, Arl4_Arl7, Arf-like 4 (Arl4) and 7 (Arl7) | 2e-25 | |
| cd00882 | 161 | cd00882, Ras_like_GTPase, Rat sarcoma (Ras)-like s | 2e-24 | |
| smart00178 | 184 | smart00178, SAR, Sar1p-like members of the Ras-fam | 2e-22 | |
| COG1100 | 219 | COG1100, COG1100, GTPase SAR1 and related small G | 3e-22 | |
| cd04158 | 169 | cd04158, ARD1, (ADP-ribosylation factor domain pro | 3e-22 | |
| cd00154 | 159 | cd00154, Rab, Ras-related in brain (Rab) family of | 9e-22 | |
| smart00175 | 164 | smart00175, RAB, Rab subfamily of small GTPases | 6e-21 | |
| pfam00071 | 162 | pfam00071, Ras, Ras family | 1e-20 | |
| cd01863 | 161 | cd01863, Rab18, Rab GTPase family 18 (Rab18) | 1e-16 | |
| cd01869 | 166 | cd01869, Rab1_Ypt1, Rab GTPase family 1 includes t | 2e-15 | |
| cd01867 | 167 | cd01867, Rab8_Rab10_Rab13_like, Rab GTPase familie | 7e-15 | |
| TIGR00231 | 162 | TIGR00231, small_GTP, small GTP-binding protein do | 8e-14 | |
| cd01860 | 163 | cd01860, Rab5_related, Rab-related GTPase family i | 2e-13 | |
| cd04105 | 202 | cd04105, SR_beta, Signal recognition particle rece | 3e-13 | |
| cd01864 | 165 | cd01864, Rab19, Rab GTPase family 19 (Rab19) | 6e-13 | |
| cd04123 | 162 | cd04123, Rab21, Rab GTPase family 21 (Rab21) | 1e-12 | |
| cd04128 | 182 | cd04128, Spg1, Septum-promoting GTPase (Spg1) | 3e-12 | |
| cd01865 | 165 | cd01865, Rab3, Rab GTPase family 3 contains Rab3A, | 3e-12 | |
| COG2229 | 187 | COG2229, COG2229, Predicted GTPase [General functi | 7e-12 | |
| cd04114 | 169 | cd04114, Rab30, Rab GTPase family 30 (Rab30) | 1e-11 | |
| cd04115 | 170 | cd04115, Rab33B_Rab33A, Rab GTPase family 33 inclu | 2e-11 | |
| cd04116 | 170 | cd04116, Rab9, Rab GTPase family 9 (Rab9) | 4e-11 | |
| cd04106 | 162 | cd04106, Rab23_like, Rab GTPase family 23 (Rab23)- | 1e-10 | |
| cd04113 | 161 | cd04113, Rab4, Rab GTPase family 4 (Rab4) | 1e-10 | |
| cd04110 | 199 | cd04110, Rab35, Rab GTPase family 35 (Rab35) | 3e-10 | |
| cd04107 | 201 | cd04107, Rab32_Rab38, Rab GTPase families 18 (Rab1 | 3e-10 | |
| PLN03118 | 211 | PLN03118, PLN03118, Rab family protein; Provisiona | 5e-10 | |
| pfam08477 | 116 | pfam08477, Miro, Miro-like protein | 7e-09 | |
| cd04109 | 213 | cd04109, Rab28, Rab GTPase family 28 (Rab28) | 9e-09 | |
| cd01868 | 165 | cd01868, Rab11_like, Rab GTPase family 11 (Rab11)- | 1e-08 | |
| cd04108 | 170 | cd04108, Rab36_Rab34, Rab GTPase families 34 (Rab3 | 1e-08 | |
| cd04111 | 211 | cd04111, Rab39, Rab GTPase family 39 (Rab39) | 2e-08 | |
| cd01861 | 161 | cd01861, Rab6, Rab GTPase family 6 (Rab6) | 3e-08 | |
| cd00880 | 161 | cd00880, Era_like, E | 4e-08 | |
| cd04112 | 191 | cd04112, Rab26, Rab GTPase family 26 (Rab26) | 4e-08 | |
| cd01862 | 172 | cd01862, Rab7, Rab GTPase family 7 (Rab7) | 8e-08 | |
| cd00877 | 166 | cd00877, Ran, Ras-related nuclear proteins (Ran)/T | 2e-07 | |
| cd09914 | 161 | cd09914, RocCOR, Ras of complex proteins (Roc) C-t | 2e-07 | |
| cd04126 | 220 | cd04126, Rab20, Rab GTPase family 20 (Rab20) | 6e-07 | |
| cd04120 | 202 | cd04120, Rab12, Rab GTPase family 12 (Rab12) | 8e-07 | |
| cd00876 | 160 | cd00876, Ras, Rat sarcoma (Ras) family of small gu | 9e-07 | |
| cd04124 | 161 | cd04124, RabL2, Rab GTPase-like family 2 (Rab-like | 1e-06 | |
| cd04117 | 164 | cd04117, Rab15, Rab GTPase family 15 (Rab15) | 3e-06 | |
| cd01866 | 168 | cd01866, Rab2, Rab GTPase family 2 (Rab2) | 4e-06 | |
| cd04122 | 166 | cd04122, Rab14, Rab GTPase family 14 (Rab14) | 5e-06 | |
| cd04163 | 168 | cd04163, Era, E | 5e-06 | |
| PTZ00132 | 215 | PTZ00132, PTZ00132, GTP-binding nuclear protein Ra | 1e-05 | |
| cd04121 | 189 | cd04121, Rab40, Rab GTPase family 40 (Rab40) conta | 1e-05 | |
| pfam09439 | 181 | pfam09439, SRPRB, Signal recognition particle rece | 2e-05 | |
| PLN03108 | 210 | PLN03108, PLN03108, Rab family protein; Provisiona | 2e-05 | |
| pfam00503 | 329 | pfam00503, G-alpha, G-protein alpha subunit | 2e-05 | |
| cd01878 | 204 | cd01878, HflX, HflX GTPase family | 2e-05 | |
| cd04140 | 165 | cd04140, ARHI_like, A Ras homolog member I (ARHI) | 3e-05 | |
| PTZ00099 | 176 | PTZ00099, PTZ00099, rab6; Provisional | 3e-05 | |
| smart00176 | 200 | smart00176, RAN, Ran (Ras-related nuclear proteins | 3e-05 | |
| cd04127 | 180 | cd04127, Rab27A, Rab GTPase family 27a (Rab27a) | 4e-05 | |
| PLN03110 | 216 | PLN03110, PLN03110, Rab GTPase; Provisional | 5e-05 | |
| cd04132 | 197 | cd04132, Rho4_like, Ras homology family 4 (Rho4) o | 5e-05 | |
| cd04176 | 163 | cd04176, Rap2, Rap2 family GTPase consists of Rap2 | 8e-05 | |
| PRK11058 | 426 | PRK11058, PRK11058, GTPase HflX; Provisional | 9e-05 | |
| pfam04670 | 230 | pfam04670, Gtr1_RagA, Gtr1/RagA G protein conserve | 1e-04 | |
| cd04147 | 197 | cd04147, Ras_dva, Ras - dorsal-ventral anterior lo | 2e-04 | |
| cd04119 | 168 | cd04119, RJL, Rab GTPase family J-like (RabJ-like) | 2e-04 | |
| cd04141 | 172 | cd04141, Rit_Rin_Ric, Ras-like protein in all tiss | 2e-04 | |
| TIGR03156 | 351 | TIGR03156, GTP_HflX, GTP-binding protein HflX | 4e-04 | |
| cd00157 | 171 | cd00157, Rho, Ras homology family (Rho) of small g | 4e-04 | |
| cd04145 | 164 | cd04145, M_R_Ras_like, R-Ras2/TC21, M-Ras/R-Ras3 | 4e-04 | |
| smart00173 | 164 | smart00173, RAS, Ras subfamily of RAS small GTPase | 4e-04 | |
| cd04103 | 158 | cd04103, Centaurin_gamma, Centaurin gamma (CENTG) | 8e-04 | |
| smart00010 | 166 | smart00010, small_GTPase, Small GTPase of the Ras | 9e-04 | |
| PLN03071 | 219 | PLN03071, PLN03071, GTP-binding nuclear protein Ra | 9e-04 | |
| cd04118 | 193 | cd04118, Rab24, Rab GTPase family 24 (Rab24) | 9e-04 | |
| COG2262 | 411 | COG2262, HflX, GTPases [General function predictio | 0.001 | |
| PRK00089 | 292 | PRK00089, era, GTPase Era; Reviewed | 0.001 | |
| cd04143 | 247 | cd04143, Rhes_like, Ras homolog enriched in striat | 0.001 | |
| cd04129 | 190 | cd04129, Rho2, Ras homology family 2 (Rho2) of sma | 0.001 | |
| COG1160 | 444 | COG1160, COG1160, Predicted GTPases [General funct | 0.002 | |
| cd01893 | 168 | cd01893, Miro1, Mitochondrial Rho family 1 (Miro1) | 0.002 | |
| cd09915 | 175 | cd09915, Rag, Rag GTPase subfamily of Ras-related | 0.002 | |
| PTZ00369 | 189 | PTZ00369, PTZ00369, Ras-like protein; Provisional | 0.002 | |
| cd04137 | 180 | cd04137, RheB, Ras Homolog Enriched in Brain (RheB | 0.002 | |
| cd01855 | 191 | cd01855, YqeH, Circularly permuted YqeH GTPase | 0.003 | |
| pfam01926 | 117 | pfam01926, MMR_HSR1, 50S ribosome-binding GTPase | 0.003 | |
| cd04146 | 166 | cd04146, RERG_RasL11_like, Ras-related and Estroge | 0.004 | |
| cd04130 | 173 | cd04130, Wrch_1, Wnt-1 responsive Cdc42 homolog (W | 0.004 | |
| smart00174 | 174 | smart00174, RHO, Rho (Ras homology) subfamily of R | 0.004 |
| >gnl|CDD|206724 cd04159, Arl10_like, Arf-like 9 (Arl9) and 10 (Arl10) GTPases | Back alignment and domain information |
|---|
Score = 289 bits (741), Expect = e-101
Identities = 114/159 (71%), Positives = 137/159 (86%)
Query: 14 ELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTM 73
E++L+GLQN+GKT+LVN IA+G +SED IPTVGFNMRKVTKGNVTIK+WDLGGQ RFR+M
Sbjct: 1 EITLVGLQNSGKTTLVNVIASGQFSEDTIPTVGFNMRKVTKGNVTIKVWDLGGQPRFRSM 60
Query: 74 WERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQ 133
WERYCRGV+AI+YVVDAADR+ + +A++ELH+LL KPSL GIPLLVLGNK D ALS
Sbjct: 61 WERYCRGVNAIVYVVDAADREKLEVAKNELHDLLEKPSLEGIPLLVLGNKNDLPGALSVD 120
Query: 134 ALVDQLGLESITDREVCCYMISCKDSINIDAVIDWLIKH 172
L++Q+ L+SITDREV CY IS K+ NID V+DWLIKH
Sbjct: 121 ELIEQMNLKSITDREVSCYSISAKEKTNIDIVLDWLIKH 159
|
Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved. Length = 159 |
| >gnl|CDD|206644 cd00878, Arf_Arl, ADP-ribosylation factor(Arf)/Arf-like (Arl) small GTPases | Back alignment and domain information |
|---|
Score = 179 bits (456), Expect = 2e-58
Identities = 60/156 (38%), Positives = 92/156 (58%), Gaps = 1/156 (0%)
Query: 17 LIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTMWER 76
++GL AGKT+++ + G IPT+GFN+ V NV +WD+GGQ + R +W+
Sbjct: 4 MLGLDGAGKTTILYKLK-LGEVVTTIPTIGFNVETVEYKNVKFTVWDVGGQDKIRPLWKH 62
Query: 77 YCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALV 136
Y +++VVD++DR+ + A++ELH+LL + L G PLL+L NK D AL++ L+
Sbjct: 63 YYENTDGLIFVVDSSDRERIEEAKNELHKLLNEEELKGAPLLILANKQDLPGALTESELI 122
Query: 137 DQLGLESITDREVCCYMISCKDSINIDAVIDWLIKH 172
+ LGLESI R S +D +DWLI+
Sbjct: 123 ELLGLESIKGRRWHIQPCSAVTGDGLDEGLDWLIEQ 158
|
Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thus, despite their significant sequence homologies, Arf family proteins may regulate unrelated functions. Length = 158 |
| >gnl|CDD|200938 pfam00025, Arf, ADP-ribosylation factor family | Back alignment and domain information |
|---|
Score = 146 bits (371), Expect = 2e-45
Identities = 62/162 (38%), Positives = 91/162 (56%), Gaps = 1/162 (0%)
Query: 10 KQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQRR 69
+EM + ++GL NAGKT+++ + G IPT+GFN+ VT NV +WD+GGQ
Sbjct: 12 NKEMRILILGLDNAGKTTILYKLKLGEIVT-TIPTIGFNVETVTYKNVKFTVWDVGGQES 70
Query: 70 FRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEA 129
R +W Y A+++VVD+ADRD + A+ ELH LL + L+ PLL+L NK D A
Sbjct: 71 LRPLWRNYFPNTDAVIFVVDSADRDRIEEAKEELHALLNEEELADAPLLILANKQDLPGA 130
Query: 130 LSKQALVDQLGLESITDREVCCYMISCKDSINIDAVIDWLIK 171
+S+ + + LGL + DR S +D +DWL
Sbjct: 131 MSEAEIRELLGLHELKDRPWEIQGCSAVTGEGLDEGLDWLSN 172
|
Pfam combines a number of different Prosite families together. Length = 174 |
| >gnl|CDD|206645 cd00879, Sar1, Sar1 is an essential component of COPII vesicle coats | Back alignment and domain information |
|---|
Score = 130 bits (328), Expect = 1e-38
Identities = 51/141 (36%), Positives = 85/141 (60%), Gaps = 1/141 (0%)
Query: 8 FFKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQ 67
+K+E ++ +GL NAGKT+L++ + ++ +PT+ ++T GNV +DLGG
Sbjct: 15 LYKKEAKIVFLGLDNAGKTTLLHMLKDDRLAQ-HVPTLHPTSEELTIGNVKFTTFDLGGH 73
Query: 68 RRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKS 127
+ R +W+ Y V I+++VDAAD + ++ EL LL L+ +P+L+LGNKIDK
Sbjct: 74 EQARRVWKDYFPEVDGIVFLVDAADPERFQESKEELDSLLNDEELANVPILILGNKIDKP 133
Query: 128 EALSKQALVDQLGLESITDRE 148
A+S++ L + LGL T +
Sbjct: 134 GAVSEEELREALGLYGTTTGK 154
|
Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation. Length = 191 |
| >gnl|CDD|206721 cd04155, Arl3, Arf-like 3 (Arl3) GTPase | Back alignment and domain information |
|---|
Score = 125 bits (317), Expect = 3e-37
Identities = 59/165 (35%), Positives = 89/165 (53%), Gaps = 7/165 (4%)
Query: 10 KQEMELSLIGLQNAGKTSLVNTIATGGYSEDM---IPTVGFNMRKVTKGNVTIKLWDLGG 66
+QE+ + L+GL NAGKT+++ +A SED+ PT GFN++ V + +WD+GG
Sbjct: 13 RQEVRILLLGLDNAGKTTILKQLA----SEDISHITPTQGFNIKNVQADGFKLNVWDIGG 68
Query: 67 QRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDK 126
QR+ R W Y ++YV+D+ADR A EL ELL + L+G+P+LV NK D
Sbjct: 69 QRKIRPYWRNYFENTDVLIYVIDSADRKRFEEAGQELVELLEEEKLAGVPVLVFANKQDL 128
Query: 127 SEALSKQALVDQLGLESITDREVCCYMISCKDSINIDAVIDWLIK 171
A + + + L L I DR S K + ++W+ K
Sbjct: 129 LTAAPAEEVAEALNLHDIRDRSWHIQACSAKTGEGLQEGMNWVCK 173
|
Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation. Length = 174 |
| >gnl|CDD|206718 cd04151, Arl1, ADP ribosylation factor 1 (Arf1) | Back alignment and domain information |
|---|
Score = 122 bits (307), Expect = 8e-36
Identities = 60/154 (38%), Positives = 87/154 (56%), Gaps = 1/154 (0%)
Query: 17 LIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTMWER 76
++GL AGKT+++ + G IPT+GFN+ VT N+ ++WDLGGQ R W
Sbjct: 4 ILGLDGAGKTTILYRLQVGEVVT-TIPTIGFNVETVTYKNLKFQVWDLGGQTSIRPYWRC 62
Query: 77 YCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALV 136
Y AI+YVVD+ DRD + I++SELH +L + L LLV NK D ALS+ +
Sbjct: 63 YYSNTDAIIYVVDSTDRDRLGISKSELHAMLEEEELKDAVLLVFANKQDMPGALSEAEVA 122
Query: 137 DQLGLESITDREVCCYMISCKDSINIDAVIDWLI 170
++LGL + DR + S +D +DWL+
Sbjct: 123 EKLGLSELKDRTWQIFKTSATKGEGLDEGMDWLV 156
|
Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability. Length = 158 |
| >gnl|CDD|206716 cd04149, Arf6, ADP ribosylation factor 6 (Arf6) | Back alignment and domain information |
|---|
Score = 120 bits (303), Expect = 4e-35
Identities = 57/141 (40%), Positives = 83/141 (58%), Gaps = 1/141 (0%)
Query: 7 LFFKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGG 66
LF +EM + ++GL AGKT+++ + G S IPTVGFN+ VT NV +WD+GG
Sbjct: 4 LFGNKEMRILMLGLDAAGKTTILYKLKLGQ-SVTTIPTVGFNVETVTYKNVKFNVWDVGG 62
Query: 67 QRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDK 126
Q + R +W Y G +++VVD+ADRD + AR ELH ++ + LLV NK D
Sbjct: 63 QDKIRPLWRHYYTGTQGLIFVVDSADRDRIDEARQELHRIINDREMRDALLLVFANKQDL 122
Query: 127 SEALSKQALVDQLGLESITDR 147
+A+ + ++LGL I DR
Sbjct: 123 PDAMKPHEIQEKLGLTRIRDR 143
|
Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed to function at multiple sites on the plasma membrane through interaction with a specific set of GEFs, GAPs, and effectors. Arf6 has been implicated in breast cancer and melanoma cell invasion, and in actin remodelling at the invasion site of Chlamydia infection. Length = 168 |
| >gnl|CDD|206722 cd04157, Arl6, Arf-like 6 (Arl6) GTPase | Back alignment and domain information |
|---|
Score = 119 bits (301), Expect = 5e-35
Identities = 53/156 (33%), Positives = 92/156 (58%), Gaps = 3/156 (1%)
Query: 18 IGLQNAGKTSLVNTIATGGY-SEDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTMWER 76
+GL N+GKT+++N + S++++PTVGFN+ KGN++ +D+ GQ ++R +WE
Sbjct: 5 LGLDNSGKTTIINQLKPSNAQSQNIVPTVGFNVESFKKGNLSFTAFDMSGQGKYRGLWEH 64
Query: 77 YCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLS--GIPLLVLGNKIDKSEALSKQA 134
Y + + I++V+D++DR + +A+ EL LL P + IP+L NK+D +AL+
Sbjct: 65 YYKNIQGIIFVIDSSDRLRMVVAKDELELLLNHPDIKHRRIPILFYANKMDLPDALTAVK 124
Query: 135 LVDQLGLESITDREVCCYMISCKDSINIDAVIDWLI 170
+ L LE+I D+ + S +D +DWL
Sbjct: 125 ITQLLCLENIKDKPWHIFASSALTGEGLDEGVDWLQ 160
|
Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily. Length = 162 |
| >gnl|CDD|128474 smart00177, ARF, ARF-like small GTPases; ARF, ADP-ribosylation factor | Back alignment and domain information |
|---|
Score = 117 bits (294), Expect = 8e-34
Identities = 55/141 (39%), Positives = 84/141 (59%), Gaps = 1/141 (0%)
Query: 7 LFFKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGG 66
LF +EM + ++GL AGKT+++ + G S IPT+GFN+ VT N++ +WD+GG
Sbjct: 8 LFGNKEMRILMVGLDAAGKTTILYKLKLG-ESVTTIPTIGFNVETVTYKNISFTVWDVGG 66
Query: 67 QRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDK 126
Q + R +W Y +++VVD+ DRD + AR ELH +L + L +LV NK D
Sbjct: 67 QDKIRPLWRHYYTNTQGLIFVVDSNDRDRIDEAREELHRMLNEDELRDAVILVFANKQDL 126
Query: 127 SEALSKQALVDQLGLESITDR 147
+A+ + ++LGL SI DR
Sbjct: 127 PDAMKAAEITEKLGLHSIRDR 147
|
Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop). Length = 175 |
| >gnl|CDD|133362 cd04162, Arl9_Arfrp2_like, Arf-like 9 (Arl9)/Arfrp2-like GTPase | Back alignment and domain information |
|---|
Score = 116 bits (292), Expect = 1e-33
Identities = 54/158 (34%), Positives = 89/158 (56%), Gaps = 6/158 (3%)
Query: 14 ELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTM 73
++ ++GL AGKTSL++++++ E ++PT GFN + + ++L ++GG + R
Sbjct: 1 QILVLGLDGAGKTSLLHSLSSERSLESVVPTTGFNSVAIPTQDAIMELLEIGGSQNLRKY 60
Query: 74 WERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQ 133
W+RY G +++VVD+AD + +P+AR ELH+LL P +PL+VL NK D A S Q
Sbjct: 61 WKRYLSGSQGLIFVVDSADSERLPLARQELHQLLQHP--PDLPLVVLANKQDLPAARSVQ 118
Query: 134 ALVDQLGLESIT-DREV---CCYMISCKDSINIDAVID 167
+ +L LE I R + ++AV D
Sbjct: 119 EIHKELELEPIARGRRWILQGTSLDDDGSPSRMEAVKD 156
|
Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date. Length = 164 |
| >gnl|CDD|206725 cd04160, Arfrp1, Arf-related protein 1 (Arfrp1) | Back alignment and domain information |
|---|
Score = 115 bits (289), Expect = 5e-33
Identities = 51/164 (31%), Positives = 85/164 (51%), Gaps = 9/164 (5%)
Query: 17 LIGLQNAGKTSLVNTIAT------GGYSEDMI-PTVGFNMRKVTKGNVTIKLWDLGGQRR 69
++GL NAGKT+ + T G + I PTVG N+ + G + WDLGGQ
Sbjct: 4 ILGLDNAGKTTFLEQTKTKFSKNYKGLNPSKITPTVGLNIGTIEVGKARLMFWDLGGQEE 63
Query: 70 FRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEA 129
R++W++Y ++YV+D+ DR+ ++S +++ +L G+PLLVL NK D +A
Sbjct: 64 LRSLWDKYYAESHGVIYVIDSTDRERFNESKSAFEKVINNEALEGVPLLVLANKQDLPDA 123
Query: 130 LSKQAL--VDQLGLESITDREVCCYMISCKDSINIDAVIDWLIK 171
LS + V + I R+ +S + ++ I+WL+
Sbjct: 124 LSVAEIKEVFDDCIALIGRRDCLVQPVSALEGEGVEEGIEWLVD 167
|
Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development. Length = 168 |
| >gnl|CDD|133353 cd04153, Arl5_Arl8, Arf-like 5 (Arl5) and 8 (Arl8) GTPases | Back alignment and domain information |
|---|
Score = 112 bits (283), Expect = 5e-32
Identities = 52/151 (34%), Positives = 83/151 (54%), Gaps = 6/151 (3%)
Query: 6 SLFFKQ-EMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDL 64
SLFF + E ++ ++GL NAGKT+++ G PT+G N+ ++ N+ +WD+
Sbjct: 8 SLFFPRKEYKVIIVGLDNAGKTTILYQFLLGEVVHTS-PTIGSNVEEIVYKNIRFLMWDI 66
Query: 65 GGQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKI 124
GGQ R+ W Y A++ V+D+ DR+ +P+ + EL+++L L LLVL NK
Sbjct: 67 GGQESLRSSWNTYYTNTDAVILVIDSTDRERLPLTKEELYKMLAHEDLRKAVLLVLANKQ 126
Query: 125 DKSEALSKQALVDQLGLESITDRE----VCC 151
D A++ + + LGL SI D CC
Sbjct: 127 DLKGAMTPAEISESLGLTSIRDHTWHIQGCC 157
|
Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date. Length = 174 |
| >gnl|CDD|206720 cd04154, Arl2, Arf-like 2 (Arl2) GTPase | Back alignment and domain information |
|---|
Score = 112 bits (281), Expect = 1e-31
Identities = 53/160 (33%), Positives = 88/160 (55%), Gaps = 1/160 (0%)
Query: 12 EMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRFR 71
EM + ++GL NAGKT+++ G + PT+GFN++ + + +WD+GGQ+ R
Sbjct: 14 EMRILMLGLDNAGKTTILKKF-NGEDISTISPTLGFNIKTLEYNGYKLNIWDVGGQKSLR 72
Query: 72 TMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALS 131
+ W Y A+++VVD++DR + + EL +LL++ L+G LL+ NK D ALS
Sbjct: 73 SYWRNYFESTDALIWVVDSSDRARLEDCKRELQKLLVEERLAGATLLIFANKQDLPGALS 132
Query: 132 KQALVDQLGLESITDREVCCYMISCKDSINIDAVIDWLIK 171
+ + + L L+SI + S N+ IDWL+
Sbjct: 133 PEEIREVLELDSIKSHHWRIFGCSAVTGENLLDGIDWLVD 172
|
Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis. Length = 173 |
| >gnl|CDD|165788 PLN00223, PLN00223, ADP-ribosylation factor; Provisional | Back alignment and domain information |
|---|
Score = 110 bits (277), Expect = 4e-31
Identities = 55/142 (38%), Positives = 83/142 (58%), Gaps = 1/142 (0%)
Query: 7 LFFKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGG 66
LF K+EM + ++GL AGKT+++ + G IPT+GFN+ V N++ +WD+GG
Sbjct: 12 LFAKKEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVETVEYKNISFTVWDVGG 70
Query: 67 QRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDK 126
Q + R +W Y + +++VVD+ DRD V AR ELH +L + L LLV NK D
Sbjct: 71 QDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDL 130
Query: 127 SEALSKQALVDQLGLESITDRE 148
A++ + D+LGL S+ R
Sbjct: 131 PNAMNAAEITDKLGLHSLRQRH 152
|
Length = 181 |
| >gnl|CDD|206717 cd04150, Arf1_5_like, ADP-ribosylation factor-1 (Arf1) and ADP-ribosylation factor-5 (Arf5) | Back alignment and domain information |
|---|
Score = 108 bits (272), Expect = 1e-30
Identities = 49/135 (36%), Positives = 78/135 (57%), Gaps = 1/135 (0%)
Query: 13 MELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRT 72
M + ++GL AGKT+++ + G IPT+GFN+ V N++ +WD+GGQ + R
Sbjct: 1 MRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVETVEYKNISFTVWDVGGQDKIRP 59
Query: 73 MWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSK 132
+W Y + +++VVD+ DR+ + AR EL +L + L LLV NK D A+S
Sbjct: 60 LWRHYFQNTQGLIFVVDSNDRERIGEAREELQRMLNEDELRDAVLLVFANKQDLPNAMSA 119
Query: 133 QALVDQLGLESITDR 147
+ D+LGL S+ +R
Sbjct: 120 AEVTDKLGLHSLRNR 134
|
The Arf1-Arf5-like subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents and other lower eukaryotes, lack Arf2. Human Arf3 shares 96% sequence identity with Arf1 and is believed to generally function interchangeably with Arf1. Human Arf4 in the activated (GTP-bound) state has been shown to interact with the cytoplasmic domain of epidermal growth factor receptor (EGFR) and mediate the EGF-dependent activation of phospholipase D2 (PLD2), leading to activation of the activator protein 1 (AP-1) transcription factor. Arf4 has also been shown to recognize the C-terminal sorting signal of rhodopsin and regulate its incorporation into specialized post-Golgi rhodopsin transport carriers (RTCs). There is some evidence that Arf5 functions at the early-Golgi and the trans-Golgi to affect Golgi-associated alpha-adaptin homology Arf-binding proteins (GGAs). Length = 159 |
| >gnl|CDD|173423 PTZ00133, PTZ00133, ADP-ribosylation factor; Provisional | Back alignment and domain information |
|---|
Score = 109 bits (273), Expect = 2e-30
Identities = 54/150 (36%), Positives = 86/150 (57%), Gaps = 5/150 (3%)
Query: 6 SLFFKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLG 65
SLF K+E+ + ++GL AGKT+++ + G IPT+GFN+ V N+ +WD+G
Sbjct: 11 SLFGKKEVRILMVGLDAAGKTTILYKLKLGEVVT-TIPTIGFNVETVEYKNLKFTMWDVG 69
Query: 66 GQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKID 125
GQ + R +W Y + + +++VVD+ DR+ + AR EL +L + L LLV NK D
Sbjct: 70 GQDKLRPLWRHYYQNTNGLIFVVDSNDRERIGDAREELERMLSEDELRDAVLLVFANKQD 129
Query: 126 KSEALSKQALVDQLGLESITDR----EVCC 151
A+S + ++LGL S+ R + CC
Sbjct: 130 LPNAMSTTEVTEKLGLHSVRQRNWYIQGCC 159
|
Length = 182 |
| >gnl|CDD|133361 cd04161, Arl2l1_Arl13_like, Arl2-like protein 1 (Arl2l1) and Arl13 | Back alignment and domain information |
|---|
Score = 102 bits (255), Expect = 5e-28
Identities = 55/154 (35%), Positives = 82/154 (53%), Gaps = 2/154 (1%)
Query: 15 LSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTMW 74
L +GL NAGKT+LV+ + G + + PTVGF K+ + ++DLGG FR +W
Sbjct: 2 LLTVGLDNAGKTTLVSALQ-GEIPKKVAPTVGFTPTKLRLDKYEVCIFDLGGGANFRGIW 60
Query: 75 ERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQA 134
Y +++VVD++D D V + L ELL P +SG P+LVL NK DK AL
Sbjct: 61 VNYYAEAHGLVFVVDSSDDDRVQEVKEILRELLQHPRVSGKPILVLANKQDKKNALLGAD 120
Query: 135 LVDQLGLESITDREVC-CYMISCKDSINIDAVID 167
+++ L LE + + C++ C + ID
Sbjct: 121 VIEYLSLEKLVNENKSLCHIEPCSAIEGLGKKID 154
|
Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene. Length = 167 |
| >gnl|CDD|133356 cd04156, ARLTS1, Arf-like tumor suppressor gene 1 (ARLTS1 or Arl11) | Back alignment and domain information |
|---|
Score = 101 bits (254), Expect = 7e-28
Identities = 41/133 (30%), Positives = 80/133 (60%), Gaps = 6/133 (4%)
Query: 17 LIGLQNAGKTSLVNTIATGGYSEDM--IPTVGFNMRKV-TKGNVTIKLWDLGGQRRFRTM 73
L+GL +AGK++L+ + ++E + IPTVGFN+ + + ++++ +WD+GGQ + RT+
Sbjct: 4 LLGLDSAGKSTLLYKLK---HAELVTTIPTVGFNVEMLQLEKHLSLTVWDVGGQEKMRTV 60
Query: 74 WERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQ 133
W+ Y ++YVVD++D + ++ EL +L + G+P+++L NK D AL+ +
Sbjct: 61 WKCYLENTDGLVYVVDSSDEARLDESQKELKHILKNEHIKGVPVVLLANKQDLPGALTAE 120
Query: 134 ALVDQLGLESITD 146
+ + L+
Sbjct: 121 EITRRFKLKKYCS 133
|
ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in high-risk familial breast cancer. Length = 160 |
| >gnl|CDD|206719 cd04152, Arl4_Arl7, Arf-like 4 (Arl4) and 7 (Arl7) GTPases | Back alignment and domain information |
|---|
Score = 96.0 bits (239), Expect = 2e-25
Identities = 52/177 (29%), Positives = 91/177 (51%), Gaps = 11/177 (6%)
Query: 11 QEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRK--VTKGN---VTIKLWDLG 65
Q + + ++GL +AGKT+++ + + +PT GFN K V+ GN VT WD+G
Sbjct: 2 QSLHIVMLGLDSAGKTTVLYRLKFNEFVN-TVPTKGFNTEKIKVSLGNAKGVTFHFWDVG 60
Query: 66 GQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKID 125
GQ + R +W+ Y R I++VVD+ D + + A++ELH++ G+P+LVL NK D
Sbjct: 61 GQEKLRPLWKSYTRCTDGIVFVVDSVDVERMEEAKTELHKITKFSENQGVPVLVLANKQD 120
Query: 126 KSEALSKQALVDQLGLESITDR-----EVCCYMISCKDSINIDAVIDWLIKHSKTAK 177
AL + L L ++ + C +I ++ + + ++K K +
Sbjct: 121 LPNALPVSEVEKLLALHELSSSTPWHVQPACAIIGEGLQEGLEKLYEMILKRRKMLR 177
|
Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily. Length = 183 |
| >gnl|CDD|206648 cd00882, Ras_like_GTPase, Rat sarcoma (Ras)-like superfamily of small guanosine triphosphatases (GTPases) | Back alignment and domain information |
|---|
Score = 92.5 bits (230), Expect = 2e-24
Identities = 47/165 (28%), Positives = 73/165 (44%), Gaps = 15/165 (9%)
Query: 17 LIGLQNAGKTSLVNTIATGGY---SEDMIPTVGFNMRKVT--KGNVTIKLWDLGGQRRFR 71
++G GK+SL+N + G S+ T ++ KG V + L D G F
Sbjct: 2 VVGRGGVGKSSLLNALLGGEVGEVSDVPGTTRDPDVYVKELDKGKVKLVLVDTPGLDEFG 61
Query: 72 TMWE-----RYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDK 126
+ RG IL VVD+ DR+S A+ + L K GIP++++GNKID
Sbjct: 62 GLGREELARLLLRGADLILLVVDSTDRESEEDAKLLILRRLRKE---GIPIILVGNKIDL 118
Query: 127 SEALSKQALVDQLGLESITDREVCCYMISCKDSINIDAVIDWLIK 171
E + L+ L I V + +S K +D + + LI+
Sbjct: 119 LEEREVEELLRLEELAKILG--VPVFEVSAKTGEGVDELFEKLIE 161
|
Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulates initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Members of the Ras superfamily are identified by the GTP binding site, which is made up of five characteristic sequence motifs, and the switch I and switch II regions. Length = 161 |
| >gnl|CDD|197556 smart00178, SAR, Sar1p-like members of the Ras-family of small GTPases | Back alignment and domain information |
|---|
Score = 88.5 bits (219), Expect = 2e-22
Identities = 46/138 (33%), Positives = 77/138 (55%), Gaps = 1/138 (0%)
Query: 8 FFKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQ 67
+ + ++ +GL NAGKT+L++ + ++ PT ++ GN+ +DLGG
Sbjct: 13 LWNKHAKILFLGLDNAGKTTLLHMLKNDRLAQ-HQPTQHPTSEELAIGNIKFTTFDLGGH 71
Query: 68 RRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKS 127
++ R +W+ Y V+ I+Y+VDA D++ ++ EL LL L+ +P L+LGNKID
Sbjct: 72 QQARRLWKDYFPEVNGIVYLVDAYDKERFAESKRELDALLSDEELATVPFLILGNKIDAP 131
Query: 128 EALSKQALVDQLGLESIT 145
A S+ L LGL + T
Sbjct: 132 YAASEDELRYALGLTNTT 149
|
Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus. Length = 184 |
| >gnl|CDD|224025 COG1100, COG1100, GTPase SAR1 and related small G proteins [General function prediction only] | Back alignment and domain information |
|---|
Score = 88.5 bits (219), Expect = 3e-22
Identities = 44/146 (30%), Positives = 75/146 (51%), Gaps = 5/146 (3%)
Query: 8 FFKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVT----KGNVTIKLWD 63
F +E ++ ++G GKT+L+N + + E PT+G T + N+ ++LWD
Sbjct: 1 LFMKEFKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPYRRNIKLQLWD 60
Query: 64 LGGQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNK 123
GQ +R++ Y RG + IL V D+ R+S E E L + + +P+L++GNK
Sbjct: 61 TAGQEEYRSLRPEYYRGANGILIVYDSTLRESSDELTEEWLEELRELAPDDVPILLVGNK 120
Query: 124 ID-KSEALSKQALVDQLGLESITDRE 148
ID E S + +++QL E +
Sbjct: 121 IDLFDEQSSSEEILNQLNREVVLLVL 146
|
Length = 219 |
| >gnl|CDD|206723 cd04158, ARD1, (ADP-ribosylation factor domain protein 1 (ARD1) | Back alignment and domain information |
|---|
Score = 87.4 bits (216), Expect = 3e-22
Identities = 51/161 (31%), Positives = 88/161 (54%), Gaps = 12/161 (7%)
Query: 18 IGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTMWERY 77
+GL AGKT+++ + + + IPT+GFN+ V N+ +WD+GG+ + R +W+ Y
Sbjct: 5 LGLDGAGKTTILFKLKQDEFMQP-IPTIGFNVETVEYKNLKFTIWDVGGKHKLRPLWKHY 63
Query: 78 CRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVD 137
A+++V+D++ RD V A SEL +LL + L LL+ NK D + ALS + + +
Sbjct: 64 YLNTQAVVFVIDSSHRDRVSEAHSELAKLLTEKELRDALLLIFANKQDVAGALSVEEMTE 123
Query: 138 QLGLESITDREVCC----YMISC--KDSINIDAVIDWLIKH 172
L L ++CC Y+ C + + + +DWL +
Sbjct: 124 LLSLH-----KLCCGRSWYIQGCDARSGMGLYEGLDWLSRQ 159
|
ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membrane. Two Tyr-based motifs in the Arf domain are responsible for Golgi localization, while the GAP domain controls lysosomal localization. Length = 169 |
| >gnl|CDD|206640 cd00154, Rab, Ras-related in brain (Rab) family of small guanosine triphosphatases (GTPases) | Back alignment and domain information |
|---|
Score = 86.0 bits (214), Expect = 9e-22
Identities = 45/160 (28%), Positives = 69/160 (43%), Gaps = 10/160 (6%)
Query: 17 LIGLQNAGKTSLVNTIATGGYSEDMIPTVG--FNMRKVTKGNVTIKL--WDLGGQRRFRT 72
LIG GKTSL+ +SE+ T+G F + + +KL WD GQ RFR+
Sbjct: 5 LIGDSGVGKTSLLLRFVDNKFSENYKSTIGVDFKSKTIEVDGKKVKLQIWDTAGQERFRS 64
Query: 73 MWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSK 132
+ Y RG + V D +R+S L+EL + IP++++GNK D L
Sbjct: 65 ITSSYYRGAHGAILVYDVTNRESFENLDKWLNELKEY-APPNIPIILVGNKSD----LED 119
Query: 133 QALVDQLGLESITDREVCCYM-ISCKDSINIDAVIDWLIK 171
+ V + + S K N+D + L +
Sbjct: 120 ERQVSTEEAQQFAKENGLLFFETSAKTGENVDEAFESLAR 159
|
Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which mask C-terminal lipid binding and promote cytosolic localization. While most unicellular organisms possess 5-20 Rab members, several have been found to possess 60 or more Rabs; for many of these Rab isoforms, homologous proteins are not found in other organisms. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Since crystal structures often lack C-terminal residues, the lipid modification site is not available for annotation in many of the CDs in the hierarchy, but is included where possible. Length = 159 |
| >gnl|CDD|197555 smart00175, RAB, Rab subfamily of small GTPases | Back alignment and domain information |
|---|
Score = 84.1 bits (209), Expect = 6e-21
Identities = 45/163 (27%), Positives = 75/163 (46%), Gaps = 10/163 (6%)
Query: 15 LSLIGLQNAGKTSLVNTIATGGYSEDMIPTVG--FNMRKVTKGNVTIKL--WDLGGQRRF 70
+ LIG GK+SL++ G +SE T+G F + + +KL WD GQ RF
Sbjct: 3 IILIGDSGVGKSSLLSRFTDGKFSEQYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQERF 62
Query: 71 RTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEAL 130
R++ Y RG L V D +R+S + L EL + + ++++GNK D L
Sbjct: 63 RSITSSYYRGAVGALLVYDITNRESFENLENWLKELREY-ASPNVVIMLVGNKSD----L 117
Query: 131 SKQALVDQLGLESITDREVCCYM-ISCKDSINIDAVIDWLIKH 172
+Q V + E+ + + S K + N++ + L +
Sbjct: 118 EEQRQVSREEAEAFAEEHGLPFFETSAKTNTNVEEAFEELARE 160
|
Rab GTPases are implicated in vesicle trafficking. Length = 164 |
| >gnl|CDD|215692 pfam00071, Ras, Ras family | Back alignment and domain information |
|---|
Score = 82.9 bits (206), Expect = 1e-20
Identities = 48/171 (28%), Positives = 72/171 (42%), Gaps = 32/171 (18%)
Query: 17 LIGLQNAGKTSLVNTIATGGYSEDMIPTVG--FNMRKVTKGNVTIKL--WDLGGQRRFRT 72
L+G GK+SL+ + E+ IPT+G F + + T+KL WD GQ RFR
Sbjct: 4 LVGDGGVGKSSLLIRFTQNKFPEEYIPTIGVDFYTKTIEVDGKTVKLQIWDTAGQERFRA 63
Query: 73 MWERYCRGVSAILYVVDAADRDS---VPIARSELHELLMKPSLSGIPLLVLGNKID---- 125
+ Y RG L V D RDS V E+ +P++++GNK D
Sbjct: 64 LRPLYYRGAQGFLLVYDITSRDSFENVKKWLEEILR--HAD--ENVPIVLVGNKCDLEDQ 119
Query: 126 ----KSEALSKQALVDQLGLESITDREVCCYM-ISCKDSINIDAVIDWLIK 171
E +AL +LG +M S K + N++ + L +
Sbjct: 120 RVVSTEEG---EALAKELG---------LPFMETSAKTNENVEEAFEELAR 158
|
Includes sub-families Ras, Rab, Rac, Ral, Ran, Rap Ypt1 and more. Shares P-loop motif with GTP_EFTU, arf and myosin_head. See pfam00009 pfam00025, pfam00063. As regards Rab GTPases, these are important regulators of vesicle formation, motility and fusion. They share a fold in common with all Ras GTPases: this is a six-stranded beta-sheet surrounded by five alpha-helices. Length = 162 |
| >gnl|CDD|206656 cd01863, Rab18, Rab GTPase family 18 (Rab18) | Back alignment and domain information |
|---|
Score = 72.3 bits (178), Expect = 1e-16
Identities = 40/116 (34%), Positives = 58/116 (50%), Gaps = 4/116 (3%)
Query: 17 LIGLQNAGKTSLVNTIATGGYSEDMIPTVG--FNMRKVTKGNVTIKL--WDLGGQRRFRT 72
LIG GK+SL+ + ED+ T+G F ++ VT +KL WD GQ RFRT
Sbjct: 5 LIGDSGVGKSSLLLRFTDDTFDEDLSSTIGVDFKVKTVTVDGKKVKLAIWDTAGQERFRT 64
Query: 73 MWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSE 128
+ Y RG ++ V D RD+ + L+EL + +++GNKIDK
Sbjct: 65 LTSSYYRGAQGVILVYDVTRRDTFDNLDTWLNELDTYSTNPDAVKMLVGNKIDKEN 120
|
Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 161 |
| >gnl|CDD|206661 cd01869, Rab1_Ypt1, Rab GTPase family 1 includes the yeast homolog Ypt1 | Back alignment and domain information |
|---|
Score = 69.7 bits (171), Expect = 2e-15
Identities = 51/168 (30%), Positives = 79/168 (47%), Gaps = 28/168 (16%)
Query: 8 FFKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVG--FNMRKVTKGNVTIKL--WD 63
FK L LIG GK+ L+ A Y+E I T+G F +R + T+KL WD
Sbjct: 2 LFK----LLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTVKLQIWD 57
Query: 64 LGGQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNK 123
GQ RFRT+ Y RG I+ V D D++S + L E + + + + L++GNK
Sbjct: 58 TAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLQE-IDRYASENVNKLLVGNK 116
Query: 124 --------IDKSEALSKQALVDQLGLESITDREVCCYMISCKDSINID 163
+D +EA + D+LG+ + S K++ N++
Sbjct: 117 CDLTDKKVVDYTEA---KEFADELGIPFLE--------TSAKNATNVE 153
|
Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 166 |
| >gnl|CDD|206659 cd01867, Rab8_Rab10_Rab13_like, Rab GTPase families 8, 10, 13 (Rab8, Rab10, Rab13) | Back alignment and domain information |
|---|
Score = 68.1 bits (167), Expect = 7e-15
Identities = 46/161 (28%), Positives = 74/161 (45%), Gaps = 18/161 (11%)
Query: 13 MELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVG--FNMRKVTKGNVTIKL--WDLGGQR 68
+L LIG GK+ L+ + ++ I T+G F +R + IKL WD GQ
Sbjct: 4 FKLLLIGDSGVGKSCLLLRFSEDSFNPSFISTIGIDFKIRTIELDGKKIKLQIWDTAGQE 63
Query: 69 RFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSE 128
RFRT+ Y RG I+ V D D S ++ + + S + +++GNK D E
Sbjct: 64 RFRTITTSYYRGAMGIILVYDITDEKSFENIKNWMRNIDEHAS-EDVERMLVGNKCDMEE 122
Query: 129 --ALSK---QALVDQLGLESITDREVCCYMISCKDSINIDA 164
+SK +AL + G++ + S K +IN++
Sbjct: 123 KRVVSKEEGEALAREYGIKFLE--------TSAKANINVEE 155
|
Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 167 |
| >gnl|CDD|232886 TIGR00231, small_GTP, small GTP-binding protein domain | Back alignment and domain information |
|---|
Score = 65.1 bits (159), Expect = 8e-14
Identities = 41/168 (24%), Positives = 71/168 (42%), Gaps = 22/168 (13%)
Query: 12 EMELSLIGLQNAGKTSLVNTIATGGYSED-MIPTVGFN--MRKVTKGNVTIK--LWDLGG 66
E+++ ++G N GK++L+N + S P N + + T K L D G
Sbjct: 1 EIKIVIVGDPNVGKSTLLNRLLGNKISITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAG 60
Query: 67 QRRFRTMWERYCRGVSAILYVVDAA----DRDSVPIARSELHELLMKPSLSGIPLLVLGN 122
Q + + Y R V + L V D D + + +++ + SG+P++++GN
Sbjct: 61 QEDYDAIRRLYYRAVESSLRVFDIVILVLDVEEILEKQTKEIIHHAE---SGVPIILVGN 117
Query: 123 KIDKSEALSK---QALVDQLGLESITDREVCCYMISCKDSINIDAVID 167
KID +A K L +L E I +S + NID+
Sbjct: 118 KIDLRDAKLKTHVAFLFAKLNGEPII-------PLSAETGKNIDSAFK 158
|
Proteins with a small GTP-binding domain recognized by this model include Ras, RhoA, Rab11, translation elongation factor G, translation initiation factor IF-2, tetratcycline resistance protein TetM, CDC42, Era, ADP-ribosylation factors, tdhF, and many others. In some proteins the domain occurs more than once.This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model [Unknown function, General]. Length = 162 |
| >gnl|CDD|206653 cd01860, Rab5_related, Rab-related GTPase family includes Rab5 and Rab22; regulates early endosome fusion | Back alignment and domain information |
|---|
Score = 64.1 bits (157), Expect = 2e-13
Identities = 37/115 (32%), Positives = 57/115 (49%), Gaps = 5/115 (4%)
Query: 15 LSLIGLQNAGKTSLVNTIATGGYSEDMIPTVG--FNMRKVTKGNVTIKL--WDLGGQRRF 70
L L+G + GK+S+V +SE+ T+G F + V + T+K WD GQ R+
Sbjct: 4 LVLLGDSSVGKSSIVLRFVKNEFSENQESTIGAAFLTQTVNLDDTTVKFEIWDTAGQERY 63
Query: 71 RTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKID 125
R++ Y RG +A + V D +S A+S + EL + + L GNK D
Sbjct: 64 RSLAPMYYRGAAAAIVVYDITSEESFEKAKSWVKELQEHGPPNIVIALA-GNKAD 117
|
The Rab5-related subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 163 |
| >gnl|CDD|206691 cd04105, SR_beta, Signal recognition particle receptor, beta subunit (SR-beta), together with SR-alpha, forms the heterodimeric signal recognition particle (SRP) | Back alignment and domain information |
|---|
Score = 64.6 bits (158), Expect = 3e-13
Identities = 35/134 (26%), Positives = 60/134 (44%), Gaps = 10/134 (7%)
Query: 17 LIGLQNAGKTSLVNTIATGGYSE---DMIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTM 73
L+G ++GKT+L + TG + P V +KG + L D+ G + R
Sbjct: 5 LLGPSDSGKTALFTKLTTGKVRSTVTSIEPNVASFYSNSSKGKK-LTLVDVPGHEKLRDK 63
Query: 74 -WERYCRGVSAILYVVDAAD--RDSVPIARSELHELLMKPSLS--GIPLLVLGNKIDKSE 128
E + AI++VVD+A ++ +A L+++L IP+L+ NK D
Sbjct: 64 LLEYLKASLKAIVFVVDSATFQKNIRDVA-EFLYDILTDLEKIKNKIPILIACNKQDLFT 122
Query: 129 ALSKQALVDQLGLE 142
A + + + L E
Sbjct: 123 AKPAKKIKELLEKE 136
|
Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this type of cancer. Length = 202 |
| >gnl|CDD|133267 cd01864, Rab19, Rab GTPase family 19 (Rab19) | Back alignment and domain information |
|---|
Score = 62.8 bits (153), Expect = 6e-13
Identities = 45/153 (29%), Positives = 70/153 (45%), Gaps = 7/153 (4%)
Query: 17 LIGLQNAGKTSLVNTIATGGYSEDMIPTVG--FNMRKVTKGNVTIKL--WDLGGQRRFRT 72
LIG N GKT +V +G +SE T+G F M+ + +KL WD GQ RFRT
Sbjct: 8 LIGDSNVGKTCVVQRFKSGTFSERQGNTIGVDFTMKTLEIQGKRVKLQIWDTAGQERFRT 67
Query: 73 MWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSK 132
+ + Y R + + D R S + E + K S + LL++GNK D E +
Sbjct: 68 ITQSYYRSANGAIIAYDITRRSSFESVPHWIEE-VEKYGASNVVLLLIGNKCDLEE--QR 124
Query: 133 QALVDQLGLESITDREVCCYMISCKDSINIDAV 165
+ L ++ + + S K+S N++
Sbjct: 125 EVLFEEACTLAEHYGILAVLETSAKESSNVEEA 157
|
Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet characterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 165 |
| >gnl|CDD|133323 cd04123, Rab21, Rab GTPase family 21 (Rab21) | Back alignment and domain information |
|---|
Score = 61.9 bits (151), Expect = 1e-12
Identities = 43/163 (26%), Positives = 65/163 (39%), Gaps = 14/163 (8%)
Query: 17 LIGLQNAGKTSLVNTIATGGYSEDMIPTV--GFNMRKVT--KGNVTIKLWDLGGQRRFRT 72
L+G GKTSLV ++E T F + V + + +WD GQ R+
Sbjct: 5 LLGEGRVGKTSLVLRYVENKFNEKHESTTQASFFQKTVNIGGKRIDLAIWDTAGQERYHA 64
Query: 73 MWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSG--IPLLVLGNKIDKSEAL 130
+ Y R + V D D DS + + EL + G I L+++GNKID L
Sbjct: 65 LGPIYYRDADGAILVYDITDADSFQKVKKWIKEL---KQMRGNNISLVIVGNKID----L 117
Query: 131 SKQALVDQLGLESITDREVCCYM-ISCKDSINIDAVIDWLIKH 172
+Q +V + E + S K I+ + L K
Sbjct: 118 ERQRVVSKSEAEEYAKSVGAKHFETSAKTGKGIEELFLSLAKR 160
|
The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 162 |
| >gnl|CDD|206701 cd04128, Spg1, Septum-promoting GTPase (Spg1) | Back alignment and domain information |
|---|
Score = 61.6 bits (150), Expect = 3e-12
Identities = 36/117 (30%), Positives = 59/117 (50%), Gaps = 6/117 (5%)
Query: 13 MELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNM--RKVTKGNVTI--KLWDLGGQR 68
+++ L+G GKTSL+ G + E+ I T+G N + ++ I +WDLGGQR
Sbjct: 1 LKIGLLGDAQIGKTSLMVKYVEGEFDEEYIQTLGVNFMEKTISIRGTEITFSIWDLGGQR 60
Query: 69 RFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKID 125
F M C+ AIL++ D + ++ + E + + + IP+LV G K D
Sbjct: 61 EFINMLPLVCKDAVAILFMFDLTRKSTLNSIK-EWYRQARGFNKTAIPILV-GTKYD 115
|
Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Length = 182 |
| >gnl|CDD|206657 cd01865, Rab3, Rab GTPase family 3 contains Rab3A, Rab3B, Rab3C and Rab3D | Back alignment and domain information |
|---|
Score = 61.1 bits (148), Expect = 3e-12
Identities = 47/167 (28%), Positives = 79/167 (47%), Gaps = 20/167 (11%)
Query: 14 ELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVG--FNMRKVTKGNVTIKL--WDLGGQRR 69
+L +IG + GKTS + A ++ + TVG F ++ V + + IKL WD GQ R
Sbjct: 3 KLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVYRNDKRIKLQIWDTAGQER 62
Query: 70 FRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKP-SLSGIPLLVLGNKIDKSE 128
+RT+ Y RG + + D + +S + ++ K S ++++GNK D +
Sbjct: 63 YRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQI--KTYSWDNAQVILVGNKCDMED 120
Query: 129 -----ALSKQALVDQLGLESITDREVCCYMISCKDSINIDAVIDWLI 170
A + L DQLG E + S K++IN+ V + L+
Sbjct: 121 ERVVSAERGRQLADQLGFEF--------FEASAKENINVKQVFERLV 159
|
The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 165 |
| >gnl|CDD|225138 COG2229, COG2229, Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 60.6 bits (147), Expect = 7e-12
Identities = 38/156 (24%), Positives = 65/156 (41%), Gaps = 17/156 (10%)
Query: 3 LHISLFFKQEMELSLIGLQNAGKTSLVNTIA------------TGGYSEDMIPTVGFNMR 50
L + E ++ +IG AGKT+ V ++ + TV +
Sbjct: 1 LTSAANKMIETKIVVIGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMDFG 60
Query: 51 KVT-KGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMK 109
+ + + L+ GQ RF+ MWE RG + +VD+ S PI +
Sbjct: 61 SIELDEDTGVHLFGTPGQERFKFMWEILSRGAVGAIVLVDS----SRPITFHAEEIIDFL 116
Query: 110 PSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESIT 145
S + IP++V NK D +AL + + + L LE ++
Sbjct: 117 TSRNPIPVVVAINKQDLFDALPPEKIREALKLELLS 152
|
Length = 187 |
| >gnl|CDD|133314 cd04114, Rab30, Rab GTPase family 30 (Rab30) | Back alignment and domain information |
|---|
Score = 59.5 bits (144), Expect = 1e-11
Identities = 45/151 (29%), Positives = 69/151 (45%), Gaps = 8/151 (5%)
Query: 17 LIGLQNAGKTSLVNTIATGGYSEDMIPTVG--FNMRKVTKGNVTIKL--WDLGGQRRFRT 72
LIG GKT LV G + T+G F ++ V IKL WD GQ RFR+
Sbjct: 12 LIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEIKGEKIKLQIWDTAGQERFRS 71
Query: 73 MWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSK 132
+ + Y R +A++ D +S L E+ + I +LV GNKID +E +
Sbjct: 72 ITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYANNKVITILV-GNKIDLAE---R 127
Query: 133 QALVDQLGLESITDREVCCYMISCKDSINID 163
+ + Q E +++ S K+S N++
Sbjct: 128 REVSQQRAEEFSDAQDMYYLETSAKESDNVE 158
|
Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 169 |
| >gnl|CDD|133315 cd04115, Rab33B_Rab33A, Rab GTPase family 33 includes Rab33A and Rab33B | Back alignment and domain information |
|---|
Score = 59.0 bits (143), Expect = 2e-11
Identities = 36/114 (31%), Positives = 56/114 (49%), Gaps = 5/114 (4%)
Query: 17 LIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVT----KGNVTIKLWDLGGQRRFR- 71
+IG N GKT L G + E T+G + R+ T + ++LWD GQ RFR
Sbjct: 7 VIGDSNVGKTCLTYRFCAGRFPERTEATIGVDFRERTVEIDGERIKVQLWDTAGQERFRK 66
Query: 72 TMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKID 125
+M + Y R V A+++V D + S S + E + +P +++GNK D
Sbjct: 67 SMVQHYYRNVHAVVFVYDVTNMASFHSLPSWIEECEQHSLPNEVPRILVGNKCD 120
|
Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 170 |
| >gnl|CDD|206697 cd04116, Rab9, Rab GTPase family 9 (Rab9) | Back alignment and domain information |
|---|
Score = 58.0 bits (140), Expect = 4e-11
Identities = 43/156 (27%), Positives = 65/156 (41%), Gaps = 12/156 (7%)
Query: 17 LIGLQNAGKTSLVNTIATGGYSEDMIPTVG---FNMRKVTKGN-VTIKLWDLGGQRRFRT 72
L+G GK+SL+N T + + T+G N G+ VT+++WD GQ RFR+
Sbjct: 10 LLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTLQIWDTAGQERFRS 69
Query: 73 MWERYCRGVSAILYVVDAADRDS---VPIARSELHELLMKPSLSGIPLLVLGNKIDKSEA 129
+ + RG L D S + + E P ++LGNKID E
Sbjct: 70 LRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDIPE- 128
Query: 130 LSKQALVDQLGLESITDREVCCYM-ISCKDSINIDA 164
+Q ++ D Y S KD+ N+ A
Sbjct: 129 --RQVSTEEAQ-AWCRDNGDYPYFETSAKDATNVAA 161
|
Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 170 |
| >gnl|CDD|133306 cd04106, Rab23_like, Rab GTPase family 23 (Rab23)-like | Back alignment and domain information |
|---|
Score = 57.1 bits (138), Expect = 1e-10
Identities = 41/164 (25%), Positives = 81/164 (49%), Gaps = 13/164 (7%)
Query: 13 MELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVG--FNMRKV----TKGNVTIKLWDLGG 66
+++ ++G N GK+S++ G +++D T+G F +++ + +V + LWD G
Sbjct: 1 IKVIVVGNGNVGKSSMIQRFVKGIFTKDYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAG 60
Query: 67 QRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDK 126
Q F + + Y RG A + V DR+S E + ++ IP++++ KID
Sbjct: 61 QEEFDAITKAYYRGAQACILVFSTTDRES--FEAIESWKEKVEAECGDIPMVLVQTKID- 117
Query: 127 SEALSKQALVDQLGLESITDR-EVCCYMISCKDSINIDAVIDWL 169
L QA++ E++ R ++ + S KD N+ + ++L
Sbjct: 118 ---LLDQAVITNEEAEALAKRLQLPLFRTSVKDDFNVTELFEYL 158
|
Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signaling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 162 |
| >gnl|CDD|206696 cd04113, Rab4, Rab GTPase family 4 (Rab4) | Back alignment and domain information |
|---|
Score = 57.1 bits (138), Expect = 1e-10
Identities = 36/116 (31%), Positives = 56/116 (48%), Gaps = 5/116 (4%)
Query: 17 LIGLQNAGKTSLVNTIATGGYSEDMIPTVG--FNMRKVTKGNVTIKL--WDLGGQRRFRT 72
+IG GK+ L++ + +D T+G F R V G ++KL WD GQ RFR+
Sbjct: 5 IIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKSVKLQIWDTAGQERFRS 64
Query: 73 MWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSE 128
+ Y RG + L V D R+S + L + S I ++++GNK D +
Sbjct: 65 VTRSYYRGAAGALLVYDITSRESFNALTNWLTDARTLAS-PDIVIILVGNKKDLED 119
|
Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 161 |
| >gnl|CDD|133310 cd04110, Rab35, Rab GTPase family 35 (Rab35) | Back alignment and domain information |
|---|
Score = 56.4 bits (136), Expect = 3e-10
Identities = 38/119 (31%), Positives = 59/119 (49%), Gaps = 6/119 (5%)
Query: 14 ELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVG--FNMRKVTKGNVTIKL--WDLGGQRR 69
+L +IG GK+SL+ A +S I T+G F +R V +KL WD GQ R
Sbjct: 8 KLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGERVKLQIWDTAGQER 67
Query: 70 FRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSE 128
FRT+ Y RG ++ V D + +S + L E+ + + + +++GNK D E
Sbjct: 68 FRTITSTYYRGTHGVIVVYDVTNGESFVNVKRWLQEI--EQNCDDVCKVLVGNKNDDPE 124
|
Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 199 |
| >gnl|CDD|206692 cd04107, Rab32_Rab38, Rab GTPase families 18 (Rab18) and 32 (Rab32) | Back alignment and domain information |
|---|
Score = 56.5 bits (137), Expect = 3e-10
Identities = 47/173 (27%), Positives = 79/173 (45%), Gaps = 27/173 (15%)
Query: 17 LIGLQNAGKTSLVNTIATGGYSEDMIPTVG--FNMRKVT---KGNVTIKLWDLGGQRRFR 71
+IG GKTS++ G +S+ T+G F ++ + V ++LWD+ GQ RF
Sbjct: 5 VIGDLGVGKTSIIKRYVHGVFSQHYKATIGVDFALKVIEWDPNTVVRLQLWDIAGQERFG 64
Query: 72 TMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMK-----------PSLSGIPLLVL 120
M Y +G + V D + R E ++K P+ IP L+L
Sbjct: 65 GMTRVYYKGAVGAIIVFD--------VTRPSTFEAVLKWKADLDSKVTLPNGEPIPALLL 116
Query: 121 GNKID-KSEALSKQALVDQLGLESITDREVCCYMISCKDSINIDAVIDWLIKH 172
NK D K E L+K +Q+ + + + S K++INI+ + +L+K+
Sbjct: 117 ANKCDLKKERLAKDP--EQMDQFCKENGFIGWFETSAKENINIEEAMRFLVKN 167
|
Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 201 |
| >gnl|CDD|215587 PLN03118, PLN03118, Rab family protein; Provisional | Back alignment and domain information |
|---|
Score = 55.8 bits (134), Expect = 5e-10
Identities = 31/83 (37%), Positives = 46/83 (55%), Gaps = 5/83 (6%)
Query: 17 LIGLQNAGKTSLVNTIATGGYSEDMIPTVG--FNMRKVTKGNVTIKL--WDLGGQRRFRT 72
LIG GK+SL+ + + ED+ PT+G F ++++T G +KL WD GQ RFRT
Sbjct: 19 LIGDSGVGKSSLLVSFISSSV-EDLAPTIGVDFKIKQLTVGGKRLKLTIWDTAGQERFRT 77
Query: 73 MWERYCRGVSAILYVVDAADRDS 95
+ Y R I+ V D R++
Sbjct: 78 LTSSYYRNAQGIILVYDVTRRET 100
|
Length = 211 |
| >gnl|CDD|219856 pfam08477, Miro, Miro-like protein | Back alignment and domain information |
|---|
Score = 50.9 bits (122), Expect = 7e-09
Identities = 30/117 (25%), Positives = 55/117 (47%), Gaps = 9/117 (7%)
Query: 15 LSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTK--GNVTIKL--WDLGGQRRF 70
+ +IG + +GK+SL++ + G + + + G + T T L WD GG+
Sbjct: 2 VVVIGDKGSGKSSLLSQLVGGEFPPEPLEIQGDTLAVDTLEVDGDTGLLNIWDFGGREEL 61
Query: 71 RTMWERYCRGVSAILYVVDAADRDS---VPIARSELHELLMKPSLSGIPLLVLGNKI 124
+ + + AIL V D DR+S V + L ++ IP++++GNK+
Sbjct: 62 KFEHIIFMKWADAILLVYDLTDRESLNEVSRLIAWLPN--LRKLGGKIPVILVGNKL 116
|
Mitochondrial Rho proteins (Miro-1, and Miro-2), are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (pfam00036), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis. Length = 116 |
| >gnl|CDD|206694 cd04109, Rab28, Rab GTPase family 28 (Rab28) | Back alignment and domain information |
|---|
Score = 52.5 bits (126), Expect = 9e-09
Identities = 35/110 (31%), Positives = 55/110 (50%), Gaps = 9/110 (8%)
Query: 24 GKTSLVNTIATGGYSEDMIPTVG--FNMRKVT---KGNVTIKLWDLGGQRRFRTMWERYC 78
GKTSL+ A G+ + T+G F R++T NVT+++WD+GGQ+ M ++Y
Sbjct: 12 GKTSLIRRFAQEGFGKSYKQTIGLDFFSRRITLPGSLNVTLQVWDIGGQQIGGKMLDKYI 71
Query: 79 RGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGI--PLLVL-GNKID 125
G A+ V D + S + ++ K + P +VL GNK D
Sbjct: 72 YGAQAVCLVYDITNSQSFENL-EDWLSVVKKVNEESETKPKMVLVGNKTD 120
|
Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumably the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 213 |
| >gnl|CDD|206660 cd01868, Rab11_like, Rab GTPase family 11 (Rab11)-like includes Rab11a, Rab11b, and Rab25 | Back alignment and domain information |
|---|
Score = 51.4 bits (124), Expect = 1e-08
Identities = 35/116 (30%), Positives = 55/116 (47%), Gaps = 11/116 (9%)
Query: 17 LIGLQNAGKTSLVNTIATGGYSEDMIPTVG--FNMRKVTKGNVTIK--LWDLGGQRRFRT 72
LIG GK++L++ ++ D T+G F R + TIK +WD GQ R+R
Sbjct: 8 LIGDSGVGKSNLLSRFTRNEFNLDSKSTIGVEFATRTIQIDGKTIKAQIWDTAGQERYRA 67
Query: 73 MWERYCRGVSAILYVVDAADRDS-VPIAR--SELHELLMKPSLSGIPLLVLGNKID 125
+ Y RG L V D + + + R EL + + S I ++++GNK D
Sbjct: 68 ITSAYYRGAVGALLVYDITKKSTFENVERWLKELRDH----ADSNIVIMLVGNKSD 119
|
Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 165 |
| >gnl|CDD|206693 cd04108, Rab36_Rab34, Rab GTPase families 34 (Rab34) and 36 (Rab36) | Back alignment and domain information |
|---|
Score = 51.4 bits (123), Expect = 1e-08
Identities = 36/114 (31%), Positives = 56/114 (49%), Gaps = 4/114 (3%)
Query: 18 IGLQNAGKTSLVNTIATGGYSEDMIPTVG--FNMRKVTKGNV--TIKLWDLGGQRRFRTM 73
+G + GKT L+N + ++ T+G F M + V +++LWD GQ RF+ +
Sbjct: 6 VGDLSVGKTCLINRFCKDVFDKNYKATIGVDFEMERFEVLGVPFSLQLWDTAGQERFKCI 65
Query: 74 WERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKS 127
Y RG AI+ V D D S+ R L + L + S + L ++G K D S
Sbjct: 66 ASTYYRGAQAIIIVFDLTDVASLEHTRQWLEDALKENDPSSVLLFLVGTKKDLS 119
|
Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 170 |
| >gnl|CDD|133311 cd04111, Rab39, Rab GTPase family 39 (Rab39) | Back alignment and domain information |
|---|
Score = 51.7 bits (124), Expect = 2e-08
Identities = 38/116 (32%), Positives = 54/116 (46%), Gaps = 5/116 (4%)
Query: 15 LSLIGLQNAGKTSLVNTIATGGYSEDMIPTVG--FNMRKV-TKGNVTIKL--WDLGGQRR 69
L +IG GK+SL+ G ++E PTVG F R + + V IKL WD GQ R
Sbjct: 5 LIVIGDSTVGKSSLLKRFTEGRFAEVSDPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQER 64
Query: 70 FRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKID 125
FR++ Y R +L V D +R+S L E +++G+K D
Sbjct: 65 FRSITRSYYRNSVGVLLVFDITNRESFEHVHDWLEEARSHIQPHRPVFILVGHKCD 120
|
Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 211 |
| >gnl|CDD|206654 cd01861, Rab6, Rab GTPase family 6 (Rab6) | Back alignment and domain information |
|---|
Score = 49.9 bits (120), Expect = 3e-08
Identities = 34/118 (28%), Positives = 55/118 (46%), Gaps = 5/118 (4%)
Query: 15 LSLIGLQNAGKTSLVNTIATGGYSEDMIPTVG--FNMRKVTKGNVTIKL--WDLGGQRRF 70
L +G Q+ GKTS++ + T+G F + + + T++L WD GQ RF
Sbjct: 3 LVFLGDQSVGKTSIITRFMYDTFDNQYQATIGIDFLSKTMYVDDKTVRLQLWDTAGQERF 62
Query: 71 RTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSE 128
R++ Y R S + V D +R S + ++ + I +LV GNK D S+
Sbjct: 63 RSLIPSYIRDSSVAVVVYDITNRQSFDNTDKWIDDVRDERGNDVIIVLV-GNKTDLSD 119
|
Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 161 |
| >gnl|CDD|206646 cd00880, Era_like, E | Back alignment and domain information |
|---|
Score = 49.9 bits (120), Expect = 4e-08
Identities = 38/169 (22%), Positives = 60/169 (35%), Gaps = 23/169 (13%)
Query: 17 LIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTK-----GNVTIKLWDLGG----- 66
+ G N GK+SL+N + G + P G V K + L D G
Sbjct: 2 IFGRPNVGKSSLLNAL-LGQNVGIVSPIPGTTRDPVRKEWELLPLGPVVLIDTPGLDEEG 60
Query: 67 ---QRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNK 123
+ R + +L VVD +D E L G P+L++ NK
Sbjct: 61 GLGRERVEEARQVA-DRADLVLLVVD-SDLT-----PVEEEAKLGLLRERGKPVLLVLNK 113
Query: 124 IDKSEALSKQALVDQLGLESITDREVCCYMISCKDSINIDAVIDWLIKH 172
ID ++ L+ + LE + D V +S ID + + +
Sbjct: 114 IDLVPESEEEELLRERKLELLPDLPVI--AVSALPGEGIDELRKKIAEL 160
|
coli Ras-like protein (Era)-like GTPase. The Era (E. coli Ras-like protein)-like family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngB), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Length = 161 |
| >gnl|CDD|206695 cd04112, Rab26, Rab GTPase family 26 (Rab26) | Back alignment and domain information |
|---|
Score = 50.2 bits (120), Expect = 4e-08
Identities = 41/116 (35%), Positives = 59/116 (50%), Gaps = 6/116 (5%)
Query: 17 LIGLQNAGKTSLVNTIATGGY-SEDMIPTVG--FNMRKVTKGNVTIKL--WDLGGQRRFR 71
L+G GKT L+ G + + I TVG F + VT V +KL WD GQ RFR
Sbjct: 5 LVGDSGVGKTCLLVRFKDGAFLAGSFIATVGIQFTNKVVTVDGVKVKLQIWDTAGQERFR 64
Query: 72 TMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKS 127
++ Y R A+L + D ++ S R+ L E+L S + +++LGNK D S
Sbjct: 65 SVTHAYYRDAHALLLLYDVTNKSSFDNIRAWLTEILEYAQ-SDVVIMLLGNKADMS 119
|
Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 191 |
| >gnl|CDD|206655 cd01862, Rab7, Rab GTPase family 7 (Rab7) | Back alignment and domain information |
|---|
Score = 49.2 bits (118), Expect = 8e-08
Identities = 39/119 (32%), Positives = 59/119 (49%), Gaps = 7/119 (5%)
Query: 17 LIGLQNAGKTSLVNTIATGGYSEDMIPTVG--FNMRKVTKGN--VTIKLWDLGGQRRFRT 72
++G GKTSL+N +S T+G F ++VT + VT+++WD GQ RF++
Sbjct: 5 ILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVTVDDRLVTLQIWDTAGQERFQS 64
Query: 73 MWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSG---IPLLVLGNKIDKSE 128
+ + RG + V D + S S E L++ S P +VLGNKID E
Sbjct: 65 LGVAFYRGADCCVLVYDVTNPKSFESLDSWRDEFLIQASPRDPENFPFVVLGNKIDLEE 123
|
Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 172 |
| >gnl|CDD|206643 cd00877, Ran, Ras-related nuclear proteins (Ran)/TC4 family of small GTPases | Back alignment and domain information |
|---|
Score = 48.1 bits (115), Expect = 2e-07
Identities = 30/126 (23%), Positives = 54/126 (42%), Gaps = 12/126 (9%)
Query: 15 LSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKV----TKGNVTIKLWDLGGQRRF 70
L L+G GKT+ V TG + + + T+G + + +G + +WD GQ +F
Sbjct: 3 LVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLDFHTNRGKIRFNVWDTAGQEKF 62
Query: 71 RTMWERYCRGVSAILYVVDAADRDS---VPIARSELHELLMKPSLSGIPLLVLGNKIDKS 127
+ + Y + + D R + VP +L + IP+++ GNK+D
Sbjct: 63 GGLRDGYYIQGQCAIIMFDVTSRVTYKNVPNWHRDLVRV-----CENIPIVLCGNKVDIK 117
Query: 128 EALSKQ 133
+ K
Sbjct: 118 DRKVKP 123
|
Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is bound to chromatin and confined to the nucleus. Ran itself is mobile and is actively imported into the nucleus by a mechanism involving NTF-2. Together with the compartmentalization of its regulators, this is thought to produce a relatively high concentration of RanGTP in the nucleus. Length = 166 |
| >gnl|CDD|206741 cd09914, RocCOR, Ras of complex proteins (Roc) C-terminal of Roc (COR) domain family | Back alignment and domain information |
|---|
Score = 47.7 bits (114), Expect = 2e-07
Identities = 40/167 (23%), Positives = 68/167 (40%), Gaps = 14/167 (8%)
Query: 12 EMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTKGN-----VTIKLWDLGG 66
E +L L+G GKTSL + + D T G N++ + + +WD GG
Sbjct: 1 EAKLMLVGQGGVGKTSLCKQLIGEKFDGDESSTHGINVQDWKIPAPERKKIRLNVWDFGG 60
Query: 67 QRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDK 126
Q + + + S L V D D V L ++ +S P++++G ID+
Sbjct: 61 QEIYHATHQFFLTSRSLYLLVFDLRTGDEVSRVPYWLRQIKAFGGVS--PVILVGTHIDE 118
Query: 127 SEALS--KQALVDQLGLESITDREVCCYMISCKDSINIDAVIDWLIK 171
S K+AL + +I + +SCK+ I + + K
Sbjct: 119 SCDEDILKKALNKK--FPAIINDIH---FVSCKNGKGIAELKKAIAK 160
|
RocCOR (or Roco) protein family is characterized by a superdomain containing a Ras-like GTPase domain, called Roc (Ras of complex proteins), and a characteristic second domain called COR (C-terminal of Roc). A kinase domain and diverse regulatory domains are also often found in Roco proteins. Their functions are diverse; in Dictyostelium discoideum, which encodes 11 Roco proteins, they are involved in cell division, chemotaxis and development, while in human, where 4 Roco proteins (LRRK1, LRRK2, DAPK1, and MFHAS1) are encoded, these proteins are involved in epilepsy and cancer. Mutations in LRRK2 (leucine-rich repeat kinase 2) are known to cause familial Parkinson's disease. Length = 161 |
| >gnl|CDD|133326 cd04126, Rab20, Rab GTPase family 20 (Rab20) | Back alignment and domain information |
|---|
Score = 47.2 bits (112), Expect = 6e-07
Identities = 33/119 (27%), Positives = 59/119 (49%), Gaps = 6/119 (5%)
Query: 17 LIGLQNAGKTSLVNTIATGGYSEDMIPTVG--FNMRKVTKGNVTIKLWDLGGQRRFRTMW 74
L+G N GKTSL++ + +D + TVG F +++ N++I WD G+ +F +
Sbjct: 5 LLGDMNVGKTSLLHRYMERRF-KDTVSTVGGAFYLKQWGPYNISI--WDTAGREQFHGLG 61
Query: 75 ERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQ 133
YCRG +A++ D ++ S+ L + + V+GNK+D +E +
Sbjct: 62 SMYCRGAAAVILTYDVSNVQSLEELEDRFLGLTDTANEDCL-FAVVGNKLDLTEEGALA 119
|
Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 220 |
| >gnl|CDD|206699 cd04120, Rab12, Rab GTPase family 12 (Rab12) | Back alignment and domain information |
|---|
Score = 46.9 bits (111), Expect = 8e-07
Identities = 43/163 (26%), Positives = 77/163 (47%), Gaps = 19/163 (11%)
Query: 13 MELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVT---KGN-VTIKLWDLGGQR 68
+++ +IG + GKTSL+ + E TVG + + T +G + +++WD GQ
Sbjct: 1 LQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQE 60
Query: 69 RFRTMWERYCRGVSAILYVVDAADR---DSVPIARSELHELLMKPSLSGIPLLVLGNKID 125
RF ++ Y R I+ V D + D +P + +++ K + LL++GNK+D
Sbjct: 61 RFNSITSAYYRSAKGIILVYDITKKETFDDLP----KWMKMIDKYASEDAELLLVGNKLD 116
Query: 126 KSEALSKQALVDQLG---LESITDREVCCYMISCKDSINIDAV 165
+ + + Q G + IT C S KD+ N+D +
Sbjct: 117 CE---TDREITRQQGEKFAQQITGMRFC--EASAKDNFNVDEI 154
|
Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 202 |
| >gnl|CDD|206642 cd00876, Ras, Rat sarcoma (Ras) family of small guanosine triphosphatases (GTPases) | Back alignment and domain information |
|---|
Score = 46.0 bits (110), Expect = 9e-07
Identities = 39/163 (23%), Positives = 72/163 (44%), Gaps = 30/163 (18%)
Query: 24 GKTSLVNTIATGGYSEDMIPTVG--FNMRKVTKGN-VTIKLWDLGGQRRFRTMWERYCRG 80
GK++L +G + E+ PT+ + + V G T+ + D GQ F M ++Y R
Sbjct: 11 GKSALTIRFVSGEFVEEYDPTIEDSYRKQIVVDGETYTLDILDTAGQEEFSAMRDQYIRN 70
Query: 81 VSAILYVVDAADRDS---VPIARSELHELLMKPSLSGIPLLVLGNKID--------KSEA 129
+ V R+S + R ++ + K +P++++GNK D E
Sbjct: 71 GDGFILVYSITSRESFEEIKNIREQILRVKDKED---VPIVLVGNKCDLENERQVSTEEG 127
Query: 130 LSKQALVDQLGLESITDREVCCYM-ISCKDSINIDAVIDWLIK 171
+AL ++ G C ++ S K +INID + + L++
Sbjct: 128 ---EALAEEWG---------CPFLETSAKTNINIDELFNTLVR 158
|
The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 160 |
| >gnl|CDD|133324 cd04124, RabL2, Rab GTPase-like family 2 (Rab-like2) | Back alignment and domain information |
|---|
Score = 45.6 bits (108), Expect = 1e-06
Identities = 31/113 (27%), Positives = 46/113 (40%), Gaps = 6/113 (5%)
Query: 17 LIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRK---VTKGN-VTIKLWDLGGQRRFRT 72
L+G GK+ LV GY + T + K +G + + WD GQ RF+T
Sbjct: 5 LLGDSAVGKSKLVERFLMDGYEPQQLSTYALTLYKHNAKFEGKTILVDFWDTAGQERFQT 64
Query: 73 MWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKID 125
M Y A + V D + + E ++ IP +V+ NKID
Sbjct: 65 MHASYYHKAHACILVFDVTRKITYKNLSKWYEE--LREYRPEIPCIVVANKID 115
|
RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share > 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Length = 161 |
| >gnl|CDD|206698 cd04117, Rab15, Rab GTPase family 15 (Rab15) | Back alignment and domain information |
|---|
Score = 44.6 bits (105), Expect = 3e-06
Identities = 36/122 (29%), Positives = 61/122 (50%), Gaps = 11/122 (9%)
Query: 15 LSLIGLQNAGKTSLVNTIATGGYSEDMIPTVG--FNMR--KVTKGNVTIKLWDLGGQRRF 70
L LIG GKT L+ + I T+G F M+ +V V I++WD GQ R+
Sbjct: 3 LLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQERY 62
Query: 71 RTMWERYCRGVSAILYVVD-AADRDSVPIAR--SELHELLMKPSLSGIPLLVLGNKIDKS 127
+T+ ++Y R I V D +++R I + S++ E + G+ +++GNK D+
Sbjct: 63 QTITKQYYRRAQGIFLVYDISSERSYQHIMKWVSDVDEY----APEGVQKILIGNKADEE 118
Query: 128 EA 129
+
Sbjct: 119 QK 120
|
Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 164 |
| >gnl|CDD|206658 cd01866, Rab2, Rab GTPase family 2 (Rab2) | Back alignment and domain information |
|---|
Score = 44.3 bits (105), Expect = 4e-06
Identities = 29/89 (32%), Positives = 43/89 (48%), Gaps = 3/89 (3%)
Query: 39 EDMIPTVGFNMRKVTKGNVTIKL--WDLGGQRRFRTMWERYCRGVSAILYVVDAADRDSV 96
D+ V F R +T IKL WD GQ FR++ Y RG + L V D R++
Sbjct: 33 HDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETF 92
Query: 97 PIARSELHELLMKPSLSGIPLLVLGNKID 125
S L + + S S + ++++GNK D
Sbjct: 93 NHLTSWLED-ARQHSNSNMTIMLIGNKCD 120
|
Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 168 |
| >gnl|CDD|133322 cd04122, Rab14, Rab GTPase family 14 (Rab14) | Back alignment and domain information |
|---|
Score = 44.1 bits (104), Expect = 5e-06
Identities = 35/115 (30%), Positives = 50/115 (43%), Gaps = 9/115 (7%)
Query: 17 LIGLQNAGKTSLVNTIATGGYSEDMIPTVG--FNMRKVTKGNVTIKL--WDLGGQRRFRT 72
+IG GK+ L++ + D T+G F R + IKL WD GQ RFR
Sbjct: 7 IIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVNGQKIKLQIWDTAGQERFRA 66
Query: 73 MWERYCRGVSAILYVVDAADRDSVPIARSELHEL--LMKPSLSGIPLLVLGNKID 125
+ Y RG + L V D R + S L + L P+ + ++GNK D
Sbjct: 67 VTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTV---IFLIGNKAD 118
|
Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 166 |
| >gnl|CDD|206726 cd04163, Era, E | Back alignment and domain information |
|---|
Score = 44.0 bits (105), Expect = 5e-06
Identities = 35/180 (19%), Positives = 70/180 (38%), Gaps = 42/180 (23%)
Query: 16 SLIGLQNAGKTSLVNTI------------------ATGGYSEDM-----IPTVGFNMRKV 52
++IG N GK++L+N + G Y++D + T G + K
Sbjct: 7 AIIGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIYTDDDAQIIFVDTPGIHKPKK 66
Query: 53 TKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSL 112
G R + W + V +L+VVDA++ +L
Sbjct: 67 KLGE-----------RMVKAAWSAL-KDVDLVLFVVDASEWIG-----EGDEFILELLKK 109
Query: 113 SGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCKDSINIDAVIDWLIKH 172
S P++++ NKID + + + E E+ + IS N+D ++++++++
Sbjct: 110 SKTPVILVLNKIDLVKDKEDLLPLLEKLKELHPFAEI--FPISALKGENVDELLEYIVEY 167
|
coli Ras-like protein (Era) is a multifunctional GTPase. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA. Length = 168 |
| >gnl|CDD|240284 PTZ00132, PTZ00132, GTP-binding nuclear protein Ran; Provisional | Back alignment and domain information |
|---|
Score = 43.9 bits (104), Expect = 1e-05
Identities = 41/170 (24%), Positives = 70/170 (41%), Gaps = 23/170 (13%)
Query: 12 EMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMR----KVTKGNVTIKLWDLGGQ 67
E +L L+G GKT+ V TG + + IPT+G + G + +WD GQ
Sbjct: 9 EFKLILVGDGGVGKTTFVKRHLTGEFEKKYIPTLGVEVHPLKFYTNCGPICFNVWDTAGQ 68
Query: 68 RRFRTMWERYCRGVSAILYVVDAADRDS---VPIARSELHELLMKPSLSGIPLLVLGNKI 124
+F + + Y + + D R + VP ++ + IP++++GNK+
Sbjct: 69 EKFGGLRDGYYIKGQCAIIMFDVTSRITYKNVPNWHRDIVRV-----CENIPIVLVGNKV 123
Query: 125 DKSEALSKQALVDQLGLESIT---DREVCCYMISCKDSINIDAVIDWLIK 171
D + K IT + + Y IS K + N + WL +
Sbjct: 124 DVKDRQVKAR--------QITFHRKKNLQYYDISAKSNYNFEKPFLWLAR 165
|
Length = 215 |
| >gnl|CDD|133321 cd04121, Rab40, Rab GTPase family 40 (Rab40) contains Rab40a, Rab40b and Rab40c | Back alignment and domain information |
|---|
Score = 43.4 bits (102), Expect = 1e-05
Identities = 33/128 (25%), Positives = 59/128 (46%), Gaps = 15/128 (11%)
Query: 17 LIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVT----KGNVTIKLWDLGGQRRFRT 72
L+G + GK ++ ++ G +G + + T V ++LWD GQ RF T
Sbjct: 11 LVGDSDVGKGEILASLQDGSTESPYGYNMGIDYKTTTILLDGRRVKLQLWDTSGQGRFCT 70
Query: 73 MWERYCRGVSAILYVVDAADR---DSVPIARSELHELLMKPSLSGIPLLVLGNKID---K 126
++ Y RG I+ V D +R D + E+ E G+P +++GN++ K
Sbjct: 71 IFRSYSRGAQGIILVYDITNRWSFDGIDRWIKEIDE-----HAPGVPKILVGNRLHLAFK 125
Query: 127 SEALSKQA 134
+ ++QA
Sbjct: 126 RQVATEQA 133
|
The Rab40 subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 189 |
| >gnl|CDD|204242 pfam09439, SRPRB, Signal recognition particle receptor beta subunit | Back alignment and domain information |
|---|
Score = 42.8 bits (101), Expect = 2e-05
Identities = 35/138 (25%), Positives = 56/138 (40%), Gaps = 15/138 (10%)
Query: 17 LIGLQNAGKTSLVNTIATGGYSE---DMIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTM 73
+ GL ++GKTSL + TG + P+ + + KG L D G + R
Sbjct: 8 IAGLCDSGKTSLFTLLTTGTVKKTVTSQEPSAAYKY-MLHKGFSF-TLIDFPGHVKLRQK 65
Query: 74 W---ERYCRGVSAILYVVD-AADRDSVPIARSELHELLMKPSLS--GIPLLVLGNKID-- 125
+ + I++VVD A V L+E+L L GI +L+ NK +
Sbjct: 66 LLETIKDSSSLRGIVFVVDSTAFPKEVTDTAEFLYEILSITELLKNGIDILIACNKQESF 125
Query: 126 --KSEALSKQALVDQLGL 141
+ KQAL ++
Sbjct: 126 TARPPKKIKQALEKEINT 143
|
The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase which anchors the alpha subunit to the endoplasmic reticulum membrane. Length = 181 |
| >gnl|CDD|178655 PLN03108, PLN03108, Rab family protein; Provisional | Back alignment and domain information |
|---|
Score = 43.0 bits (101), Expect = 2e-05
Identities = 33/113 (29%), Positives = 52/113 (46%), Gaps = 5/113 (4%)
Query: 17 LIGLQNAGKTSLVNTIATGGYS--EDMIPTVGFNMRKVTKGNVTIKL--WDLGGQRRFRT 72
+IG GK+ L+ + D+ V F R +T N IKL WD GQ FR+
Sbjct: 11 IIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRS 70
Query: 73 MWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKID 125
+ Y RG + L V D R++ S L + + + + ++++GNK D
Sbjct: 71 ITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHAN-ANMTIMLIGNKCD 122
|
Length = 210 |
| >gnl|CDD|215955 pfam00503, G-alpha, G-protein alpha subunit | Back alignment and domain information |
|---|
Score = 43.4 bits (103), Expect = 2e-05
Identities = 26/94 (27%), Positives = 41/94 (43%), Gaps = 10/94 (10%)
Query: 42 IPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAADRDSVPI--- 98
+ T G K + +L+D+GGQR R W V+AI++VV ++ D V
Sbjct: 153 VKTTGIIETKFDFKGLKFRLFDVGGQRSERKKWIHCFEDVTAIIFVVSLSEYDQVLYEDD 212
Query: 99 ARSELHELLM-------KPSLSGIPLLVLGNKID 125
+ + L E L P P+++ NK D
Sbjct: 213 STNRLEESLNLFEEICNSPWFKNTPIILFLNKKD 246
|
G proteins couple receptors of extracellular signals to intracellular signaling pathways. The G protein alpha subunit binds guanyl nucleotide and is a weak GTPase. A set of residues that are unique to G-alpha as compared to its ancestor the Arf-like family form a ring of residues centered on the nucleotide binding site. A Ggamma is found fused to an inactive Galpha in the Dictyostelium protein gbqA. Length = 329 |
| >gnl|CDD|206666 cd01878, HflX, HflX GTPase family | Back alignment and domain information |
|---|
Score = 42.8 bits (102), Expect = 2e-05
Identities = 39/187 (20%), Positives = 71/187 (37%), Gaps = 58/187 (31%)
Query: 16 SLIGLQNAGKTSLVNTIATGG-YSEDMI-----PTVGFNMRKVTKGNVTIKLWDLGGQRR 69
+L+G NAGK++L N + +ED + PT R++ L G R
Sbjct: 45 ALVGYTNAGKSTLFNALTGADVLAEDQLFATLDPTT----RRI----------KLPGGRE 90
Query: 70 --------------------FR-TMWERYCRGVSAILYVVDAADRDSVPIARSEL---HE 105
FR T+ E +L+VVDA+D P ++ E
Sbjct: 91 VLLTDTVGFIRDLPHQLVEAFRSTLEE--VAEADLLLHVVDASD----PDREEQIETVEE 144
Query: 106 LLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCKDSINIDAV 165
+L + IP++++ NKID + + + +++ IS K +D +
Sbjct: 145 VLKELGADDIPIILVLNKIDLLDDEELEERLRAGRPDAV--------FISAKTGEGLDLL 196
Query: 166 IDWLIKH 172
+ + +
Sbjct: 197 KEAIEEL 203
|
HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms. Length = 204 |
| >gnl|CDD|206711 cd04140, ARHI_like, A Ras homolog member I (ARHI) | Back alignment and domain information |
|---|
Score = 42.1 bits (99), Expect = 3e-05
Identities = 40/165 (24%), Positives = 72/165 (43%), Gaps = 12/165 (7%)
Query: 17 LIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKV---TKGNVTIKLWDLGGQRRFRTM 73
+ G GK+SLV G + E IPT+ R+V +K T+++ D G +F M
Sbjct: 6 VFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCSKSICTLQITDTTGSHQFPAM 65
Query: 74 WERYCRGVSAILYVVDAADRDSVPIARSELHELLMK---PSLSGIPLLVLGNKIDKSEAL 130
A + V + S+ + ++EL+ + +L IP++++GNK D+S +
Sbjct: 66 QRLSISKGHAFILVYSITSKQSLEELKP-IYELICEIKGNNLEKIPIMLVGNKCDESPSR 124
Query: 131 SKQALVDQLGLESITDREVCCYM-ISCKDSINIDAVIDWLIKHSK 174
V ++ C +M S K + N+ + L+ K
Sbjct: 125 E----VSSSEGAALARTWNCAFMETSAKTNHNVQELFQELLNLEK 165
|
ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 165 |
| >gnl|CDD|185444 PTZ00099, PTZ00099, rab6; Provisional | Back alignment and domain information |
|---|
Score = 42.0 bits (98), Expect = 3e-05
Identities = 25/72 (34%), Positives = 37/72 (51%), Gaps = 1/72 (1%)
Query: 54 KGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLS 113
+G V ++LWD GQ RFR++ Y R +A + V D +R S + ++L +
Sbjct: 26 EGPVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNERGKD 85
Query: 114 GIPLLVLGNKID 125
I LV GNK D
Sbjct: 86 VIIALV-GNKTD 96
|
Length = 176 |
| >gnl|CDD|128473 smart00176, RAN, Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases | Back alignment and domain information |
|---|
Score = 42.3 bits (99), Expect = 3e-05
Identities = 40/165 (24%), Positives = 73/165 (44%), Gaps = 25/165 (15%)
Query: 18 IGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKV----TKGNVTIKLWDLGGQRRFRTM 73
+G GKT+ V TG + + + T+G + + +G + +WD GQ +F +
Sbjct: 1 VGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIRFNVWDTAGQEKFGGL 60
Query: 74 WE-RYCRGVSAILYVVDAADR---DSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEA 129
+ Y +G AI+ + D R +VP +L + IP+++ GNK+D +
Sbjct: 61 RDGYYIQGQCAII-MFDVTARVTYKNVPNWHRDLVRV-----CENIPIVLCGNKVDVKDR 114
Query: 130 LSKQALVDQLGLESIT---DREVCCYMISCKDSINIDAVIDWLIK 171
++ +SIT + + Y IS K + N + WL +
Sbjct: 115 --------KVKAKSITFHRKKNLQYYDISAKSNYNFEKPFLWLAR 151
|
Ran is involved in the active transport of proteins through nuclear pores. Length = 200 |
| >gnl|CDD|206700 cd04127, Rab27A, Rab GTPase family 27a (Rab27a) | Back alignment and domain information |
|---|
Score = 41.7 bits (98), Expect = 4e-05
Identities = 32/143 (22%), Positives = 57/143 (39%), Gaps = 19/143 (13%)
Query: 18 IGLQNAGKTSLVNTIATGGYSEDMIPTVG--FNMRKVTKGN------------VTIKLWD 63
+G GKT+ + ++ I TVG F ++V + V ++LWD
Sbjct: 10 LGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNSQGPDGTSGKAFRVHLQLWD 69
Query: 64 LGGQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNK 123
GQ RFR++ + R L + D S R+ + +L ++++GNK
Sbjct: 70 TAGQERFRSLTTAFFRDAMGFLLMFDLTSEQSFLNVRNWMSQLQAHAYCENPDIVLIGNK 129
Query: 124 IDKSE-----ALSKQALVDQLGL 141
D + + L D+ G+
Sbjct: 130 ADLPDQREVSERQARELADKYGI 152
|
The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated insulin secretion, making it a potential target for diabetes therapy. When bound to JFC1 in prostate cells, Rab27a is believed to regulate the exocytosis of prostate- specific markers. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 180 |
| >gnl|CDD|178657 PLN03110, PLN03110, Rab GTPase; Provisional | Back alignment and domain information |
|---|
Score = 41.8 bits (98), Expect = 5e-05
Identities = 33/113 (29%), Positives = 52/113 (46%), Gaps = 5/113 (4%)
Query: 17 LIGLQNAGKTSLVNTIATGGYSEDMIPTVG--FNMRKVTKGNVTIK--LWDLGGQRRFRT 72
LIG GK+++++ + + T+G F R + T+K +WD GQ R+R
Sbjct: 17 LIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRA 76
Query: 73 MWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKID 125
+ Y RG L V D R + + L E L + S I +++ GNK D
Sbjct: 77 ITSAYYRGAVGALLVYDITKRQTFDNVQRWLRE-LRDHADSNIVIMMAGNKSD 128
|
Length = 216 |
| >gnl|CDD|206704 cd04132, Rho4_like, Ras homology family 4 (Rho4) of small guanosine triphosphatases (GTPases)-like | Back alignment and domain information |
|---|
Score = 41.6 bits (98), Expect = 5e-05
Identities = 44/177 (24%), Positives = 69/177 (38%), Gaps = 41/177 (23%)
Query: 24 GKTSLVNTIATGGYSEDMIPTVGFN-MRKVTKGN---VTIKLWDLGGQRRFRTMWERYCR 79
GKT L+ A G + E+ +PTV N + + N + + LWD GQ E Y R
Sbjct: 15 GKTCLLMVYAQGSFPEEYVPTVFENYVTTLQVPNGKIIELALWDTAGQ-------EDYDR 67
Query: 80 -------GVSAILYVVDAADRDSVPIARSELHELLMK--PSLS----GIPLLVLGNKIDK 126
V IL + S L + K P ++ G P++++G K D
Sbjct: 68 LRPLSYPDVDVILICYSVDNPTS-------LDNVEDKWYPEVNHFCPGTPIVLVGLKTDL 120
Query: 127 SEALSKQALVDQLGLESIT-------DREVCCYM-ISC--KDSINIDAVIDWLIKHS 173
+ + + + GLE +T + + I C K N+D V D I +
Sbjct: 121 RKDKNSVSKLRAQGLEPVTPEQGESVAKSIGAVAYIECSAKLMENVDEVFDAAINVA 177
|
Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Length = 197 |
| >gnl|CDD|133376 cd04176, Rap2, Rap2 family GTPase consists of Rap2a, Rap2b, and Rap2c | Back alignment and domain information |
|---|
Score = 40.6 bits (95), Expect = 8e-05
Identities = 29/158 (18%), Positives = 67/158 (42%), Gaps = 8/158 (5%)
Query: 12 EMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRK---VTKGNVTIKLWDLGGQR 68
E ++ ++G GK++L +G + E PT+ RK V +++ D G
Sbjct: 1 EYKVVVLGSGGVGKSALTVQFVSGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTE 60
Query: 69 RFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSE 128
+F +M + Y + + V ++ + + +++ +P++++GNK+D
Sbjct: 61 QFASMRDLYIKNGQGFIVVYSLVNQQTFQDIKPMRDQIVRVKGYEKVPIILVGNKVD--- 117
Query: 129 ALSKQALVDQLGLESITDREVCCYM-ISCKDSINIDAV 165
L + V ++ + C +M S K ++ +
Sbjct: 118 -LESEREVSSAEGRALAEEWGCPFMETSAKSKTMVNEL 154
|
The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, including the RalGEFs RalGDS, RGL, and Rlf, which also interact with Rap1 and Ras. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 163 |
| >gnl|CDD|182934 PRK11058, PRK11058, GTPase HflX; Provisional | Back alignment and domain information |
|---|
Score = 41.6 bits (98), Expect = 9e-05
Identities = 40/125 (32%), Positives = 62/125 (49%), Gaps = 18/125 (14%)
Query: 15 LSLIGLQNAGKTSLVNTIATGG-YSED-MIPTVGFNMRKVTKGNV-TIKLWDLGGQRR-- 69
+SL+G NAGK++L N I Y+ D + T+ +R++ +V L D G R
Sbjct: 200 VSLVGYTNAGKSTLFNRITEARVYAADQLFATLDPTLRRIDVADVGETVLADTVGFIRHL 259
Query: 70 -------FR-TMWERYCRGVSAILYVVDAAD-RDSVPIARSELHELLMKPSLSGIPLLVL 120
F+ T+ E R + +L+VVDAAD R I ++ +L + IP L++
Sbjct: 260 PHDLVAAFKATLQE--TRQATLLLHVVDAADVRVQENIE--AVNTVLEEIDAHEIPTLLV 315
Query: 121 GNKID 125
NKID
Sbjct: 316 MNKID 320
|
Length = 426 |
| >gnl|CDD|218203 pfam04670, Gtr1_RagA, Gtr1/RagA G protein conserved region | Back alignment and domain information |
|---|
Score = 41.0 bits (97), Expect = 1e-04
Identities = 26/96 (27%), Positives = 38/96 (39%), Gaps = 27/96 (28%)
Query: 17 LIGLQNAGKTSLVNTI-------------ATGGYSEDMIPTVGFNMRKVTKGNVTIKLWD 63
L+GL+ +GK+S+ + I AT + V F GN+T+ LWD
Sbjct: 4 LMGLRGSGKSSMRSIIFSNYSPRDTLRLGATIDVEQS---HVRFL------GNLTLNLWD 54
Query: 64 LGGQRRF-----RTMWERYCRGVSAILYVVDAADRD 94
GQ F E V ++YV D R+
Sbjct: 55 CPGQDDFMENYLTRQKEHIFSNVGVLIYVFDVESRE 90
|
GTR1 was first identified in S. cerevisiae as a suppressor of a mutation in RCC1. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1. Included in this family is the human Rag C, a novel protein that has been shown to interact with RagA/B. Length = 230 |
| >gnl|CDD|206714 cd04147, Ras_dva, Ras - dorsal-ventral anterior localization (Ras-dva) family | Back alignment and domain information |
|---|
Score = 39.8 bits (93), Expect = 2e-04
Identities = 38/164 (23%), Positives = 65/164 (39%), Gaps = 7/164 (4%)
Query: 15 LSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRK---VTKGNVTIKLWDLGGQRRFR 71
L +G GKT+L+ + TV K V VTI + D G F
Sbjct: 2 LVFMGAAGVGKTALIQRFLYDTFEPKHRRTVEELHSKEYEVAGVKVTIDILDTSGSYSFP 61
Query: 72 TMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALS 131
M + + A V D +S + E+L +P++V+GNKID L+
Sbjct: 62 AMRKLSIQNGDAFALVYSVDDPESFEEVKRLREEILEVKEDKFVPIVVVGNKIDS---LA 118
Query: 132 KQALVDQLGLESITDREVCCYM-ISCKDSINIDAVIDWLIKHSK 174
++ + L ++ ++ S KD+ N+ V L++ +
Sbjct: 119 ERQVEAADALSTVELDWNNGFVEASAKDNENVTEVFKELLQQAN 162
|
Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 197 |
| >gnl|CDD|133319 cd04119, RJL, Rab GTPase family J-like (RabJ-like) | Back alignment and domain information |
|---|
Score = 39.6 bits (93), Expect = 2e-04
Identities = 28/118 (23%), Positives = 53/118 (44%), Gaps = 8/118 (6%)
Query: 18 IGLQNAGKTSLVNTIATGGYSEDMIPTVG--FNMRKVTKGNVTIKL--WDLGGQRRFRTM 73
+G GK+ ++ G + +PT+G + ++KV+ N +++ +DL G + +
Sbjct: 6 MGNSGVGKSCIIKRYCEGRFVSKYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHPEYLEV 65
Query: 74 WERYCRGVSAILYVVDAADRDSVPIARSELHE----LLMKPSLSGIPLLVLGNKIDKS 127
+ + +L V D DR S S L E ++ I ++V NKID +
Sbjct: 66 RNEFYKDTQGVLLVYDVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKIDLT 123
|
RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Length = 168 |
| >gnl|CDD|206712 cd04141, Rit_Rin_Ric, Ras-like protein in all tissues (Rit), Ras-like protein in neurons (Rin) and Ras-related protein which interacts with calmodulin (Ric) | Back alignment and domain information |
|---|
Score = 39.5 bits (92), Expect = 2e-04
Identities = 28/119 (23%), Positives = 54/119 (45%), Gaps = 5/119 (4%)
Query: 11 QEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTV--GFNMRKVTKGN-VTIKLWDLGGQ 67
+E ++ ++G GK+++ + + + PT+ + + + + D GQ
Sbjct: 1 REYKIVMLGAGGVGKSAVTMQFISHSFPDYHDPTIEDAYKTQARIDNEPALLDILDTAGQ 60
Query: 68 RRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLS-GIPLLVLGNKID 125
F M ++Y R + DR S A E EL+ + L+ IPL+++GNK+D
Sbjct: 61 AEFTAMRDQYMRCGEGFIICYSVTDRHSFQEAS-EFKELITRVRLTEDIPLVLVGNKVD 118
|
Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to signal in parallel with the Ras pathway or stimulate the Ras pathway at some upstream point, and binding of calmodulin to Ric may negatively regulate Ric activity. Length = 172 |
| >gnl|CDD|234125 TIGR03156, GTP_HflX, GTP-binding protein HflX | Back alignment and domain information |
|---|
Score = 39.4 bits (93), Expect = 4e-04
Identities = 43/174 (24%), Positives = 75/174 (43%), Gaps = 33/174 (18%)
Query: 16 SLIGLQNAGKTSLVNTIATGG-YSEDMI-----PTVGFNMRKVT-KGNVTIKLWDLGGQR 68
+L+G NAGK++L N + Y+ D + PT R++ + L D G
Sbjct: 193 ALVGYTNAGKSTLFNALTGADVYAADQLFATLDPT----TRRLDLPDGGEVLLTDTVGFI 248
Query: 69 R---------FR-TMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLL 118
R FR T+ E R +L+VVDA+D D + ++L + IP L
Sbjct: 249 RDLPHELVAAFRATLEE--VREADLLLHVVDASDPDREEQIE-AVEKVLEELGAEDIPQL 305
Query: 119 VLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCKDSINIDAVIDWLIKH 172
++ NKID L+D+ +E + + +S K +D +++ + +
Sbjct: 306 LVYNKID---------LLDEPRIERLEEGYPEAVFVSAKTGEGLDLLLEAIAER 350
|
This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like) [Unknown function, General]. Length = 351 |
| >gnl|CDD|206641 cd00157, Rho, Ras homology family (Rho) of small guanosine triphosphatases (GTPases) | Back alignment and domain information |
|---|
Score = 38.7 bits (91), Expect = 4e-04
Identities = 28/116 (24%), Positives = 46/116 (39%), Gaps = 12/116 (10%)
Query: 17 LIGLQNAGKTSLVNTIATGGYSEDMIPTV--GFNMRKVTKGN-VTIKLWDLGGQ---RRF 70
++G GKT L+ + T + + +PTV ++ G V + LWD GQ R
Sbjct: 5 VVGDGAVGKTCLLISYTTNKFPTEYVPTVFDNYSANVTVDGKQVNLGLWDTAGQEEYDRL 64
Query: 71 RTMWERYCRGVSAILYVVDAADRDSVP-IARSELHELLMKPSLSGIPLLVLGNKID 125
R + Y L S + E+ K +P++++G KID
Sbjct: 65 RPL--SYP-QTDVFLLCFSVDSPSSFENVKTKWYPEI--KHYCPNVPIILVGTKID 115
|
Members of the Rho (Ras homology) family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Since crystal structures often lack C-terminal residues, this feature is not available for annotation in many of the CDs in the hierarchy. Length = 171 |
| >gnl|CDD|133345 cd04145, M_R_Ras_like, R-Ras2/TC21, M-Ras/R-Ras3 | Back alignment and domain information |
|---|
Score = 38.5 bits (90), Expect = 4e-04
Identities = 29/104 (27%), Positives = 43/104 (41%), Gaps = 7/104 (6%)
Query: 63 DLGGQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMK-PSLSGIPLLVLG 121
D GQ F M E+Y R L V DR S + H +++ P++++G
Sbjct: 56 DTAGQEEFSAMREQYMRTGEGFLLVFSVTDRGSFEEVD-KFHTQILRVKDRDEFPMILVG 114
Query: 122 NKIDKSEALSKQALV-DQLGLESITDREVCCYMISCKDSINIDA 164
NK D L Q V + G E ++ S KD +N+D
Sbjct: 115 NKAD----LEHQRQVSREEGQELARQLKIPYIETSAKDRVNVDK 154
|
The M-Ras/R-Ras-like subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 164 |
| >gnl|CDD|214541 smart00173, RAS, Ras subfamily of RAS small GTPases | Back alignment and domain information |
|---|
Score = 38.7 bits (91), Expect = 4e-04
Identities = 36/155 (23%), Positives = 64/155 (41%), Gaps = 26/155 (16%)
Query: 24 GKTSLVNTIATGGYSEDMIPTVGFNMRKVTKGN---VTIKLWDLGGQRRFRTMWERYCRG 80
GK++L G + +D PT+ + RK + + + + D GQ F M ++Y R
Sbjct: 12 GKSALTIQFIQGHFVDDYDPTIEDSYRKQIEIDGEVCLLDILDTAGQEEFSAMRDQYMRT 71
Query: 81 VSAILYVVDAADRDSVPIARSELHELLMK-PSLSGIPLLVLGNKID--------KSEALS 131
L V DR S + + E +++ +P++++GNK D E
Sbjct: 72 GEGFLLVYSITDRQSFEEIK-KFREQILRVKDRDDVPIVLVGNKCDLESERVVSTEEG-- 128
Query: 132 KQALVDQLGLESITDREVCCYM-ISCKDSINIDAV 165
+ L Q G C ++ S K+ +N+D
Sbjct: 129 -KELARQWG---------CPFLETSAKERVNVDEA 153
|
Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades. Length = 164 |
| >gnl|CDD|133303 cd04103, Centaurin_gamma, Centaurin gamma (CENTG) GTPase | Back alignment and domain information |
|---|
Score = 37.9 bits (88), Expect = 8e-04
Identities = 38/156 (24%), Positives = 70/156 (44%), Gaps = 9/156 (5%)
Query: 13 MELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVG-FNMRKVTKGNVTIKLW-DLGGQRRF 70
++L ++G +GK++LV+ TG Y + P G F + G + L D GG
Sbjct: 1 LKLGIVGNLRSGKSALVHRYLTGSYVQLESPEGGRFKKEVLVDGQSHLLLIRDEGGAPDA 60
Query: 71 RTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEAL 130
++ V A+++V D S H+L ++S IPL+++G + D A
Sbjct: 61 -----QFAGWVDAVIFVFSLEDEASFQTVYRLYHQLSSYRNISEIPLILVGTQ-DAISAS 114
Query: 131 SKQALVDQLGLESITDREVCCYMISCKD-SINIDAV 165
+ + + D + D + C Y +C +N++ V
Sbjct: 115 NPRVIDDARARQLCADMKRCSYYETCATYGLNVERV 150
|
The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues. GGAP has been shown to have high GTPase activity due to a direct intramolecular interaction between the N-terminal GTPase domain and the C-terminal ArfGAP domain. In human tissue, AGAP mRNA was detected in skeletal muscle, kidney, placenta, brain, heart, colon, and lung. Reduced expression levels were also observed in the spleen, liver, and small intestine. Length = 158 |
| >gnl|CDD|197466 smart00010, small_GTPase, Small GTPase of the Ras superfamily; ill-defined subfamily | Back alignment and domain information |
|---|
Score = 37.9 bits (89), Expect = 9e-04
Identities = 36/155 (23%), Positives = 63/155 (40%), Gaps = 26/155 (16%)
Query: 24 GKTSLVNTIATGGYSEDMIPTVGFNMRKVTKGN---VTIKLWDLGGQRRFRTMWERYCRG 80
GK++L G + ++ PT+ + RK + + + + D GQ F M ++Y R
Sbjct: 14 GKSALTIQFVQGHFVDEYDPTIEDSYRKQIEIDGEVCLLDILDTAGQEEFSAMRDQYMRT 73
Query: 81 VSAILYVVDAADRDSVPIARSELHELLMK-PSLSGIPLLVLGNKID--------KSEALS 131
L V DR S + E +++ +P++++GNK D E
Sbjct: 74 GEGFLLVYSITDRQSFEEIA-KFREQILRVKDRDDVPIVLVGNKCDLENERVVSTEEG-- 130
Query: 132 KQALVDQLGLESITDREVCCYM-ISCKDSINIDAV 165
+ L Q G C ++ S K+ IN+D
Sbjct: 131 -KELARQWG---------CPFLETSAKERINVDEA 155
|
SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily. Length = 166 |
| >gnl|CDD|178620 PLN03071, PLN03071, GTP-binding nuclear protein Ran; Provisional | Back alignment and domain information |
|---|
Score = 38.2 bits (89), Expect = 9e-04
Identities = 32/119 (26%), Positives = 53/119 (44%), Gaps = 14/119 (11%)
Query: 15 LSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKV----TKGNVTIKLWDLGGQRRF 70
L ++G GKT+ V TG + + PT+G + + G + WD GQ +F
Sbjct: 16 LVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKF 75
Query: 71 RTMWE-RYCRGVSAILYVVDAADRDS---VPIARSELHELLMKPSLSGIPLLVLGNKID 125
+ + Y G AI+ + D R + VP +L + IP+++ GNK+D
Sbjct: 76 GGLRDGYYIHGQCAII-MFDVTARLTYKNVPTWHRDLCRV-----CENIPIVLCGNKVD 128
|
Length = 219 |
| >gnl|CDD|133318 cd04118, Rab24, Rab GTPase family 24 (Rab24) | Back alignment and domain information |
|---|
Score = 37.9 bits (88), Expect = 9e-04
Identities = 35/136 (25%), Positives = 55/136 (40%), Gaps = 7/136 (5%)
Query: 17 LIGLQNAGKTSLVNTIATGGYSEDMIP-TVG--FNMRKVTKGN--VTIKLWDLGGQRRFR 71
++G ++ GKTSLV + T+G F +++ G VT+ +WD G R+
Sbjct: 5 MLGKESVGKTSLVERYVHHRFLVGPYQNTIGAAFVAKRMVVGERVVTLGIWDTAGSERYE 64
Query: 72 TMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALS 131
M Y RG A + D D S A+ + EL + + + G K D E
Sbjct: 65 AMSRIYYRGAKAAIVCYDLTDSSSFERAKFWVKEL--QNLEEHCKIYLCGTKSDLIEQDR 122
Query: 132 KQALVDQLGLESITDR 147
VD ++ D
Sbjct: 123 SLRQVDFHDVQDFADE 138
|
Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 193 |
| >gnl|CDD|225171 COG2262, HflX, GTPases [General function prediction only] | Back alignment and domain information |
|---|
Score = 38.4 bits (90), Expect = 0.001
Identities = 39/176 (22%), Positives = 71/176 (40%), Gaps = 36/176 (20%)
Query: 16 SLIGLQNAGKTSLVNTIATGG-YSEDMIPTVGFNMRKVTKGNVTIKLWDL---------G 65
+L+G NAGK++L N + Y D + + I+L D G
Sbjct: 196 ALVGYTNAGKSTLFNALTGADVYVADQLFATLDPTTR------RIELGDGRKVLLTDTVG 249
Query: 66 GQRR--------FRTMWERYCRGVSAILYVVDAADRDSVPIARSE-LHELLMKPSLSGIP 116
R F++ E + +L+VVDA+D + + + E + ++L + IP
Sbjct: 250 FIRDLPHPLVEAFKSTLEE-VKEADLLLHVVDASDPE--ILEKLEAVEDVLAEIGADEIP 306
Query: 117 LLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCKDSINIDAVIDWLIKH 172
++++ NKID L D+ L + IS K +D + + +I+
Sbjct: 307 IILVLNKIDL--------LEDEEILAELERGSPNPVFISAKTGEGLDLLRERIIEL 354
|
Length = 411 |
| >gnl|CDD|234624 PRK00089, era, GTPase Era; Reviewed | Back alignment and domain information |
|---|
Score = 38.1 bits (90), Expect = 0.001
Identities = 25/98 (25%), Positives = 46/98 (46%), Gaps = 15/98 (15%)
Query: 79 RGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQ 138
+ V +L+VVDA + I + +L K P++++ NKID K+ L+
Sbjct: 83 KDVDLVLFVVDADE----KIGPGD-EFILEKLKKVKTPVILVLNKIDL--VKDKEELLPL 135
Query: 139 LGLESITDR----EVCCYMISCKDSINIDAVIDWLIKH 172
L E +++ E+ IS N+D ++D + K+
Sbjct: 136 L--EELSELMDFAEI--VPISALKGDNVDELLDVIAKY 169
|
Length = 292 |
| >gnl|CDD|133343 cd04143, Rhes_like, Ras homolog enriched in striatum (Rhes) and activator of G-protein signaling 1 (Dexras1/AGS1) | Back alignment and domain information |
|---|
Score = 38.2 bits (89), Expect = 0.001
Identities = 42/167 (25%), Positives = 70/167 (41%), Gaps = 27/167 (16%)
Query: 17 LIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKV--TKGNV-TIKLWDLGGQRRFRTM 73
++G GKT++V+ G + E PT+ RK+ +G V + + D G F M
Sbjct: 5 VLGASKVGKTAIVSRFLGGRFEEQYTPTIEDFHRKLYSIRGEVYQLDILDTSGNHPFPAM 64
Query: 74 WERYCRGVSAI-----LYVVDAADRDS---VPIARSELHE-----LLMKPSLSGIPLLVL 120
R +S + + V +R+S V R ++ E IP+++
Sbjct: 65 -----RRLSILTGDVFILVFSLDNRESFEEVCRLREQILETKSCLKNKTKENVKIPMVIC 119
Query: 121 GNKIDKSEALSKQAL-VDQLGLESITDREVCCYM-ISCKDSINIDAV 165
GNK D+ Q V+QL + E C Y +S K + N+D +
Sbjct: 120 GNKADRDFPREVQRDEVEQL----VGGDENCAYFEVSAKKNSNLDEM 162
|
This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression levels in other tissues. Dexras1 localizes primarily to the cytoplasm, and is a critical regulator of the circadian master clock to photic and nonphotic input. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 247 |
| >gnl|CDD|206702 cd04129, Rho2, Ras homology family 2 (Rho2) of small guanosine triphosphatases (GTPases) | Back alignment and domain information |
|---|
Score = 37.5 bits (87), Expect = 0.001
Identities = 37/133 (27%), Positives = 62/133 (46%), Gaps = 13/133 (9%)
Query: 14 ELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMR---KVTKGNVTIKLWDLGGQ--- 67
+L ++G GKTSL+ G + E+ PTV N +V V + LWD GQ
Sbjct: 3 KLVIVGDGACGKTSLLYVFTLGEFPEEYHPTVFENYVTDCRVDGKPVQLALWDTAGQEEY 62
Query: 68 RRFRTMWERYCRG-VSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKID- 125
R R + Y + V I + +D DS+ R++ E + + +P++++G K D
Sbjct: 63 ERLRPL--SYSKAHVILIGFAIDTP--DSLENVRTKWIEEVRR-YCPNVPVILVGLKKDL 117
Query: 126 KSEALSKQALVDQ 138
+ EA++K
Sbjct: 118 RQEAVAKGNYATD 130
|
Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors). Length = 190 |
| >gnl|CDD|224082 COG1160, COG1160, Predicted GTPases [General function prediction only] | Back alignment and domain information |
|---|
Score = 37.6 bits (88), Expect = 0.002
Identities = 37/170 (21%), Positives = 65/170 (38%), Gaps = 28/170 (16%)
Query: 17 LIGLQNAGKTSLVNTIA---------TGGYSEDMIPTVGF-NMRKV----TKGNVTIKLW 62
++G N GK++L N + T G + D I R+ T G
Sbjct: 8 IVGRPNVGKSTLFNRLTGRRIAIVSDTPGVTRDRIYGDAEWLGREFILIDTGGLDDGDED 67
Query: 63 DLGGQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGN 122
+L R + + IL+VVD R+ + A E+ ++L + S P++++ N
Sbjct: 68 ELQELIREQALIAIEE--ADVILFVVDG--REGITPADEEIAKILRR---SKKPVILVVN 120
Query: 123 KIDKSEALSKQALVDQLGLESITDREVCCYMISCKDSINIDAVIDWLIKH 172
KID +A LG IS + I ++D +++
Sbjct: 121 KIDNLKAEELAYEFYSLGFGEP-------VPISAEHGRGIGDLLDAVLEL 163
|
Length = 444 |
| >gnl|CDD|206680 cd01893, Miro1, Mitochondrial Rho family 1 (Miro1), N-terminal | Back alignment and domain information |
|---|
Score = 36.9 bits (86), Expect = 0.002
Identities = 36/154 (23%), Positives = 65/154 (42%), Gaps = 8/154 (5%)
Query: 17 LIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMR---KVTKGNVTIKLWDLGGQRRFRTM 73
LIG + GK+SL+ ++ + + E+ +P V + VT V + D + + R
Sbjct: 7 LIGDEGVGKSSLIMSLVSEEFPEN-VPRVLPEITIPADVTPERVPTTIVDTSSRPQDRAN 65
Query: 74 WERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSG-IPLLVLGNKIDKSEALSK 132
R + I V ++ R L + L +P++++GNK D + S+
Sbjct: 66 LAAEIRKANVICLVYSVDRPSTLE--RIRTKWLPLIRRLGVKVPIILVGNKSDLRDGSSQ 123
Query: 133 QALVDQLGLESITDREV-CCYMISCKDSINIDAV 165
L +++ RE+ C S K IN+ V
Sbjct: 124 AGLEEEMLPIMNEFREIETCVECSAKTLINVSEV 157
|
Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature. Length = 168 |
| >gnl|CDD|206742 cd09915, Rag, Rag GTPase subfamily of Ras-related GTPases | Back alignment and domain information |
|---|
Score = 36.8 bits (85), Expect = 0.002
Identities = 16/43 (37%), Positives = 21/43 (48%), Gaps = 3/43 (6%)
Query: 53 TKGNVTIKLWDLGGQRRFRTM---WERYCRGVSAILYVVDAAD 92
GN T+ LWD GQ F E + V A++YV+D D
Sbjct: 44 FLGNXTLNLWDCPGQDVFFEPTKDKEHIFQXVGALIYVIDVQD 86
|
Rag GTPases (ras-related GTP-binding proteins) constitute a unique subgroup of the Ras superfamily, playing an essential role in regulating amino acid-induced target of rapamycin complex 1 (TORC1) kinase signaling, exocytic cargo sorting at endosomes, and epigenetic control of gene expression. This subfamily consists of RagA and RagB as well as RagC and RagD that are closely related. Saccharomyces cerevisiae encodes single orthologs of metazoan RagA/B and RagC/D, Gtr1 and Gtr2, respectively. Dimer formation is important for their cellular function; these domains form heterodimers, as RagA or RagB dimerizes with RagC or RagD, and similarly, Gtr1 dimerizes with Gtr2. In response to amino acids, the Rag GTPases guide the TORC1 complex to activate the platform containing Rheb proto-oncogene by driving the relocalization of mTORC1 from discrete locations in the cytoplasm to a late endosomal and/or lysosomal compartment that is Rheb-enriched and contains Rab-7. Length = 175 |
| >gnl|CDD|240385 PTZ00369, PTZ00369, Ras-like protein; Provisional | Back alignment and domain information |
|---|
Score = 36.8 bits (85), Expect = 0.002
Identities = 27/117 (23%), Positives = 51/117 (43%), Gaps = 3/117 (2%)
Query: 12 EMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRK---VTKGNVTIKLWDLGGQR 68
E +L ++G GK++L + ++ PT+ + RK + + + + D GQ
Sbjct: 5 EYKLVVVGGGGVGKSALTIQFIQNHFIDEYDPTIEDSYRKQCVIDEETCLLDILDTAGQE 64
Query: 69 RFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKID 125
+ M ++Y R L V R S S ++L +P++++GNK D
Sbjct: 65 EYSAMRDQYMRTGQGFLCVYSITSRSSFEEIASFREQILRVKDKDRVPMILVGNKCD 121
|
Length = 189 |
| >gnl|CDD|206709 cd04137, RheB, Ras Homolog Enriched in Brain (RheB) is a small GTPase | Back alignment and domain information |
|---|
Score = 36.5 bits (85), Expect = 0.002
Identities = 27/115 (23%), Positives = 54/115 (46%), Gaps = 9/115 (7%)
Query: 17 LIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTKGN---VTIKLWDLGGQRRFRTM 73
++G ++ GK+SL G + E PT+ K+ +++ D GQ + +
Sbjct: 6 VLGSRSVGKSSLTVQFVEGHFVESYYPTIENTFSKIITYKGQEYHLEIVDTAGQDEYSIL 65
Query: 74 WERYCRGVSAILYVVDAADRDS---VPIARSELHELLMKPSLSGIPLLVLGNKID 125
++Y G+ + V R S V + ++ ++L K S +P++++GNK D
Sbjct: 66 PQKYSIGIHGYILVYSVTSRKSFEVVKVIYDKILDMLGKES---VPIVLVGNKSD 117
|
Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that leads to cell growth and cell-cycle progression. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 180 |
| >gnl|CDD|206748 cd01855, YqeH, Circularly permuted YqeH GTPase | Back alignment and domain information |
|---|
Score = 36.5 bits (85), Expect = 0.003
Identities = 23/97 (23%), Positives = 45/97 (46%), Gaps = 16/97 (16%)
Query: 84 ILYVVDAADRDSVPIAR-SELHELLMKPSLSGIPLLVLGNKID-----KSEALSKQALVD 137
+++VVD D P + L EL+ P++++GNKID KQ +
Sbjct: 37 VVHVVDIFD---FPGSLIPGLAELI-----GAKPVILVGNKIDLLPKDVKPNRLKQWVKK 88
Query: 138 QLGLESITDREVCCYMISCKDSINIDAVIDWLIKHSK 174
+L + + ++V +S K ++ +I+ + K +K
Sbjct: 89 RLKIGGLKIKDVIL--VSAKKGWGVEELIEEIKKLAK 123
|
YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. Length = 191 |
| >gnl|CDD|216791 pfam01926, MMR_HSR1, 50S ribosome-binding GTPase | Back alignment and domain information |
|---|
Score = 35.3 bits (82), Expect = 0.003
Identities = 28/123 (22%), Positives = 46/123 (37%), Gaps = 25/123 (20%)
Query: 17 LIGLQNAGKTSLVNTIATGGYSEDMIPTVG-------FNMRKVTKGNVTIKLWDLGGQRR 69
L+G N GK++L+N + + + V + V I L D G
Sbjct: 4 LVGRPNVGKSTLINAL-----TGAKVAIVSDYPGTTRDPILGVLGLGRQIILVDTPGLIE 58
Query: 70 ------FRTMWERYCRGVS---AILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVL 120
+ R+ + IL VVDA + + E+ E L K L P++++
Sbjct: 59 GASEGKGVEGFNRFLEAIREADLILLVVDA--SEGLTEDDEEILEELEK--LPKKPIILV 114
Query: 121 GNK 123
NK
Sbjct: 115 LNK 117
|
The full-length GTPase protein is required for the complete activity of the protein of interacting with the 50S ribosome and binding of both adenine and guanine nucleotides, with a preference for guanine nucleotide. Length = 117 |
| >gnl|CDD|206713 cd04146, RERG_RasL11_like, Ras-related and Estrogen-Regulated Growth inhibitor (RERG) and Ras-like 11 (RasL11)-like families | Back alignment and domain information |
|---|
Score = 36.1 bits (84), Expect = 0.004
Identities = 26/118 (22%), Positives = 52/118 (44%), Gaps = 8/118 (6%)
Query: 15 LSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRK---VTKGNVTIKLWDLGGQRRFR 71
++++G GK++L T + + P + + + V++++ D GQ++
Sbjct: 2 IAVLGASGVGKSALTVRFLTKRFIGEYEPNLESLYSRQVTIDGEQVSLEIQDTPGQQQNE 61
Query: 72 T--MWERYCRGVSAILYVVDAADRDSVPIARSELHELL--MKPSLSGIPLLVLGNKID 125
ER R + V DR S + L +L+ +K IP++++GNK D
Sbjct: 62 DPESLERSLRWADGFVLVYSITDRSSFDVVSQ-LLQLIREIKKRDGEIPVILVGNKAD 118
|
RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tumor suppressor activity. Length = 166 |
| >gnl|CDD|133330 cd04130, Wrch_1, Wnt-1 responsive Cdc42 homolog (Wrch-1) is a Rho family GTPase similar to Cdc42 | Back alignment and domain information |
|---|
Score = 35.8 bits (83), Expect = 0.004
Identities = 20/60 (33%), Positives = 31/60 (51%), Gaps = 3/60 (5%)
Query: 17 LIGLQNAGKTSLVNTIATGGYSEDMIPTV--GFNMRKVTKGN-VTIKLWDLGGQRRFRTM 73
L+G GKTSL+ + T GY + +PT F++ + G V ++L D GQ F +
Sbjct: 5 LVGDGAVGKTSLIVSYTTNGYPTEYVPTAFDNFSVVVLVDGKPVRLQLCDTAGQDEFDKL 64
|
Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 173 |
| >gnl|CDD|197554 smart00174, RHO, Rho (Ras homology) subfamily of Ras-like small GTPases | Back alignment and domain information |
|---|
Score = 36.1 bits (84), Expect = 0.004
Identities = 18/47 (38%), Positives = 23/47 (48%), Gaps = 3/47 (6%)
Query: 24 GKTSLVNTIATGGYSEDMIPTVGFNM---RKVTKGNVTIKLWDLGGQ 67
GKT L+ T + ED +PTV N +V V + LWD GQ
Sbjct: 10 GKTCLLIVYTTNAFPEDYVPTVFENYSADVEVDGKPVELGLWDTAGQ 56
|
Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms. Length = 174 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 177 | |||
| KOG0084 | 205 | consensus GTPase Rab1/YPT1, small G protein superf | 100.0 | |
| PLN00223 | 181 | ADP-ribosylation factor; Provisional | 100.0 | |
| smart00177 | 175 | ARF ARF-like small GTPases; ARF, ADP-ribosylation | 100.0 | |
| cd04149 | 168 | Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor | 100.0 | |
| PTZ00133 | 182 | ADP-ribosylation factor; Provisional | 100.0 | |
| KOG0094 | 221 | consensus GTPase Rab6/YPT6/Ryh1, small G protein s | 100.0 | |
| cd04150 | 159 | Arf1_5_like Arf1-Arf5-like subfamily. This subfami | 100.0 | |
| KOG0092 | 200 | consensus GTPase Rab5/YPT51 and related small G pr | 100.0 | |
| cd04158 | 169 | ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor | 100.0 | |
| cd04120 | 202 | Rab12 Rab12 subfamily. Rab12 was first identified | 100.0 | |
| cd04121 | 189 | Rab40 Rab40 subfamily. This subfamily contains Rab | 100.0 | |
| KOG0394 | 210 | consensus Ras-related GTPase [General function pre | 100.0 | |
| cd04154 | 173 | Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are | 100.0 | |
| cd04141 | 172 | Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like p | 100.0 | |
| cd04153 | 174 | Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) a | 100.0 | |
| KOG0078 | 207 | consensus GTP-binding protein SEC4, small G protei | 100.0 | |
| cd04157 | 162 | Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a sub | 100.0 | |
| cd04151 | 158 | Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes t | 100.0 | |
| cd04133 | 176 | Rop_like Rop subfamily. The Rop (Rho-related prote | 100.0 | |
| cd01875 | 191 | RhoG RhoG subfamily. RhoG is a GTPase with high se | 100.0 | |
| cd04127 | 180 | Rab27A Rab27a subfamily. The Rab27a subfamily cons | 100.0 | |
| KOG0080 | 209 | consensus GTPase Rab18, small G protein superfamil | 100.0 | |
| cd00877 | 166 | Ran Ran (Ras-related nuclear proteins) /TC4 subfam | 100.0 | |
| cd04161 | 167 | Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 ( | 100.0 | |
| PF00025 | 175 | Arf: ADP-ribosylation factor family The prints ent | 100.0 | |
| KOG0098 | 216 | consensus GTPase Rab2, small G protein superfamily | 100.0 | |
| cd04172 | 182 | Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE | 100.0 | |
| cd04128 | 182 | Spg1 Spg1p. Spg1p (septum-promoting GTPase) was fi | 100.0 | |
| cd04162 | 164 | Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 | 100.0 | |
| cd04107 | 201 | Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 | 100.0 | |
| cd04122 | 166 | Rab14 Rab14 subfamily. Rab14 GTPases are localized | 100.0 | |
| cd04152 | 183 | Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) i | 100.0 | |
| KOG0075 | 186 | consensus GTP-binding ADP-ribosylation factor-like | 100.0 | |
| smart00178 | 184 | SAR Sar1p-like members of the Ras-family of small | 100.0 | |
| cd04126 | 220 | Rab20 Rab20 subfamily. Rab20 is one of several Rab | 100.0 | |
| cd04136 | 163 | Rap_like Rap-like subfamily. The Rap subfamily con | 100.0 | |
| cd00878 | 158 | Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-lik | 100.0 | |
| cd04175 | 164 | Rap1 Rap1 subgroup. The Rap1 subgroup is part of t | 100.0 | |
| cd01874 | 175 | Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPas | 100.0 | |
| PTZ00369 | 189 | Ras-like protein; Provisional | 100.0 | |
| cd00879 | 190 | Sar1 Sar1 subfamily. Sar1 is an essential componen | 100.0 | |
| cd04131 | 178 | Rnd Rnd subfamily. The Rnd subfamily contains Rnd1 | 100.0 | |
| cd04108 | 170 | Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found pr | 100.0 | |
| cd04160 | 167 | Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related prote | 100.0 | |
| PLN03071 | 219 | GTP-binding nuclear protein Ran; Provisional | 100.0 | |
| cd04174 | 232 | Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a memb | 100.0 | |
| cd01865 | 165 | Rab3 Rab3 subfamily. The Rab3 subfamily contains R | 100.0 | |
| cd04119 | 168 | RJL RJL (RabJ-Like) subfamily. RJLs are found in m | 100.0 | |
| cd04159 | 159 | Arl10_like Arl10-like subfamily. Arl9/Arl10 was id | 100.0 | |
| cd04138 | 162 | H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, | 100.0 | |
| cd04156 | 160 | ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor su | 100.0 | |
| cd01867 | 167 | Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Yp | 100.0 | |
| cd04117 | 161 | Rab15 Rab15 subfamily. Rab15 colocalizes with the | 100.0 | |
| cd04109 | 215 | Rab28 Rab28 subfamily. First identified in maize, | 100.0 | |
| cd04144 | 190 | Ras2 Ras2 subfamily. The Ras2 subfamily, found exc | 100.0 | |
| smart00173 | 164 | RAS Ras subfamily of RAS small GTPases. Similar in | 100.0 | |
| cd04124 | 161 | RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily | 100.0 | |
| cd04145 | 164 | M_R_Ras_like M-Ras/R-Ras-like subfamily. This subf | 100.0 | |
| cd01869 | 166 | Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in ev | 100.0 | |
| cd04140 | 165 | ARHI_like ARHI subfamily. ARHI (A Ras homolog memb | 100.0 | |
| cd04176 | 163 | Rap2 Rap2 subgroup. The Rap2 subgroup is part of t | 100.0 | |
| cd01864 | 165 | Rab19 Rab19 subfamily. Rab19 proteins are associat | 100.0 | |
| cd01871 | 174 | Rac1_like Rac1-like subfamily. The Rac1-like subfa | 100.0 | |
| cd04155 | 173 | Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf f | 100.0 | |
| cd04111 | 211 | Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 | 100.0 | |
| cd04103 | 158 | Centaurin_gamma Centaurin gamma. The centaurins (a | 100.0 | |
| KOG0070 | 181 | consensus GTP-binding ADP-ribosylation factor Arf1 | 100.0 | |
| cd04110 | 199 | Rab35 Rab35 subfamily. Rab35 is one of several Rab | 100.0 | |
| KOG0095 | 213 | consensus GTPase Rab30, small G protein superfamil | 100.0 | |
| cd04116 | 170 | Rab9 Rab9 subfamily. Rab9 is found in late endosom | 100.0 | |
| KOG0073 | 185 | consensus GTP-binding ADP-ribosylation factor-like | 99.98 | |
| PLN03110 | 216 | Rab GTPase; Provisional | 99.98 | |
| cd04134 | 189 | Rho3 Rho3 subfamily. Rho3 is a member of the Rho f | 99.98 | |
| cd04173 | 222 | Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a memb | 99.98 | |
| cd04115 | 170 | Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is u | 99.98 | |
| cd04112 | 191 | Rab26 Rab26 subfamily. First identified in rat pan | 99.98 | |
| cd04106 | 162 | Rab23_lke Rab23-like subfamily. Rab23 is a member | 99.98 | |
| cd01866 | 168 | Rab2 Rab2 subfamily. Rab2 is localized on cis-Golg | 99.98 | |
| cd04125 | 188 | RabA_like RabA-like subfamily. RabA was first iden | 99.98 | |
| cd04132 | 187 | Rho4_like Rho4-like subfamily. Rho4 is a GTPase th | 99.98 | |
| KOG0087 | 222 | consensus GTPase Rab11/YPT3, small G protein super | 99.97 | |
| KOG0093 | 193 | consensus GTPase Rab3, small G protein superfamily | 99.97 | |
| cd01868 | 165 | Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 a | 99.97 | |
| cd04143 | 247 | Rhes_like Rhes_like subfamily. This subfamily incl | 99.97 | |
| cd01892 | 169 | Miro2 Miro2 subfamily. Miro (mitochondrial Rho) pr | 99.97 | |
| cd04113 | 161 | Rab4 Rab4 subfamily. Rab4 has been implicated in n | 99.97 | |
| smart00176 | 200 | RAN Ran (Ras-related nuclear proteins) /TC4 subfam | 99.97 | |
| KOG0086 | 214 | consensus GTPase Rab4, small G protein superfamily | 99.97 | |
| cd01861 | 161 | Rab6 Rab6 subfamily. Rab6 is involved in microtubu | 99.97 | |
| cd04101 | 164 | RabL4 RabL4 (Rab-like4) subfamily. RabL4s are nove | 99.97 | |
| cd01860 | 163 | Rab5_related Rab5-related subfamily. This subfamil | 99.97 | |
| smart00175 | 164 | RAB Rab subfamily of small GTPases. Rab GTPases ar | 99.97 | |
| cd04142 | 198 | RRP22 RRP22 subfamily. RRP22 (Ras-related protein | 99.97 | |
| cd01862 | 172 | Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase th | 99.97 | |
| KOG0079 | 198 | consensus GTP-binding protein H-ray, small G prote | 99.97 | |
| cd01863 | 161 | Rab18 Rab18 subfamily. Mammalian Rab18 is implicat | 99.97 | |
| cd01893 | 166 | Miro1 Miro1 subfamily. Miro (mitochondrial Rho) pr | 99.97 | |
| cd04177 | 168 | RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the | 99.97 | |
| cd04118 | 193 | Rab24 Rab24 subfamily. Rab24 is distinct from othe | 99.97 | |
| PLN03108 | 210 | Rab family protein; Provisional | 99.97 | |
| cd04139 | 164 | RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) | 99.97 | |
| smart00174 | 174 | RHO Rho (Ras homology) subfamily of Ras-like small | 99.97 | |
| PF00071 | 162 | Ras: Ras family; InterPro: IPR001806 Small GTPases | 99.97 | |
| PLN03118 | 211 | Rab family protein; Provisional | 99.97 | |
| cd04135 | 174 | Tc10 TC10 subfamily. TC10 is a Rho family protein | 99.97 | |
| cd04148 | 221 | RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Ki | 99.97 | |
| cd04147 | 198 | Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-v | 99.97 | |
| cd04146 | 165 | RERG_RasL11_like RERG/RasL11-like subfamily. RERG | 99.97 | |
| KOG0071 | 180 | consensus GTP-binding ADP-ribosylation factor Arf6 | 99.97 | |
| cd04123 | 162 | Rab21 Rab21 subfamily. The localization and functi | 99.97 | |
| cd04114 | 169 | Rab30 Rab30 subfamily. Rab30 appears to be associa | 99.97 | |
| KOG0088 | 218 | consensus GTPase Rab21, small G protein superfamil | 99.97 | |
| cd01870 | 175 | RhoA_like RhoA-like subfamily. The RhoA subfamily | 99.97 | |
| cd04130 | 173 | Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive | 99.97 | |
| KOG0091 | 213 | consensus GTPase Rab39, small G protein superfamil | 99.97 | |
| cd00154 | 159 | Rab Rab family. Rab GTPases form the largest famil | 99.97 | |
| cd01873 | 195 | RhoBTB RhoBTB subfamily. Members of the RhoBTB sub | 99.97 | |
| cd04137 | 180 | RheB Rheb (Ras Homolog Enriched in Brain) subfamil | 99.97 | |
| cd00876 | 160 | Ras Ras family. The Ras family of the Ras superfam | 99.96 | |
| cd00157 | 171 | Rho Rho (Ras homology) family. Members of the Rho | 99.96 | |
| PTZ00132 | 215 | GTP-binding nuclear protein Ran; Provisional | 99.96 | |
| cd04129 | 187 | Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that | 99.96 | |
| KOG0081 | 219 | consensus GTPase Rab27, small G protein superfamil | 99.96 | |
| cd01897 | 168 | NOG NOG1 is a nucleolar GTP-binding protein presen | 99.96 | |
| cd01898 | 170 | Obg Obg subfamily. The Obg nucleotide binding prot | 99.95 | |
| cd04102 | 202 | RabL3 RabL3 (Rab-like3) subfamily. RabL3s are nove | 99.95 | |
| cd04171 | 164 | SelB SelB subfamily. SelB is an elongation factor | 99.95 | |
| KOG0395 | 196 | consensus Ras-related GTPase [General function pre | 99.95 | |
| PRK12299 | 335 | obgE GTPase CgtA; Reviewed | 99.95 | |
| KOG0083 | 192 | consensus GTPase Rab26/Rab37, small G protein supe | 99.95 | |
| cd01878 | 204 | HflX HflX subfamily. A distinct conserved domain w | 99.95 | |
| cd01890 | 179 | LepA LepA subfamily. LepA belongs to the GTPase fa | 99.95 | |
| PRK15494 | 339 | era GTPase Era; Provisional | 99.94 | |
| cd01887 | 168 | IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryo | 99.94 | |
| PRK03003 | 472 | GTP-binding protein Der; Reviewed | 99.94 | |
| TIGR00436 | 270 | era GTP-binding protein Era. Era is an essential G | 99.94 | |
| TIGR00231 | 161 | small_GTP small GTP-binding protein domain. This m | 99.94 | |
| PRK04213 | 201 | GTP-binding protein; Provisional | 99.94 | |
| KOG0076 | 197 | consensus GTP-binding ADP-ribosylation factor-like | 99.94 | |
| TIGR02729 | 329 | Obg_CgtA Obg family GTPase CgtA. This model descri | 99.94 | |
| KOG0097 | 215 | consensus GTPase Rab14, small G protein superfamil | 99.94 | |
| KOG0072 | 182 | consensus GTP-binding ADP-ribosylation factor-like | 99.94 | |
| cd00881 | 189 | GTP_translation_factor GTP translation factor fami | 99.94 | |
| TIGR03156 | 351 | GTP_HflX GTP-binding protein HflX. This protein fa | 99.93 | |
| cd01891 | 194 | TypA_BipA TypA (tyrosine phosphorylated protein A) | 99.93 | |
| KOG0074 | 185 | consensus GTP-binding ADP-ribosylation factor-like | 99.93 | |
| TIGR02528 | 142 | EutP ethanolamine utilization protein, EutP. This | 99.93 | |
| cd04164 | 157 | trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein | 99.93 | |
| PLN00023 | 334 | GTP-binding protein; Provisional | 99.93 | |
| cd01889 | 192 | SelB_euk SelB subfamily. SelB is an elongation fac | 99.93 | |
| cd01881 | 176 | Obg_like The Obg-like subfamily consists of five w | 99.93 | |
| PRK05291 | 449 | trmE tRNA modification GTPase TrmE; Reviewed | 99.93 | |
| TIGR03594 | 429 | GTPase_EngA ribosome-associated GTPase EngA. EngA | 99.93 | |
| cd00882 | 157 | Ras_like_GTPase Ras-like GTPase superfamily. The R | 99.93 | |
| TIGR00450 | 442 | mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE | 99.93 | |
| PF02421 | 156 | FeoB_N: Ferrous iron transport protein B; InterPro | 99.93 | |
| cd01895 | 174 | EngA2 EngA2 subfamily. This CD represents the seco | 99.93 | |
| cd01879 | 158 | FeoB Ferrous iron transport protein B (FeoB) subfa | 99.93 | |
| PRK03003 | 472 | GTP-binding protein Der; Reviewed | 99.93 | |
| PF00009 | 188 | GTP_EFTU: Elongation factor Tu GTP binding domain; | 99.93 | |
| PRK12296 | 500 | obgE GTPase CgtA; Reviewed | 99.93 | |
| cd01894 | 157 | EngA1 EngA1 subfamily. This CD represents the firs | 99.93 | |
| PRK12297 | 424 | obgE GTPase CgtA; Reviewed | 99.92 | |
| COG1100 | 219 | GTPase SAR1 and related small G proteins [General | 99.92 | |
| cd01888 | 203 | eIF2_gamma eIF2-gamma (gamma subunit of initiation | 99.92 | |
| PRK00454 | 196 | engB GTP-binding protein YsxC; Reviewed | 99.92 | |
| KOG0393 | 198 | consensus Ras-related small GTPase, Rho type [Gene | 99.92 | |
| PRK15467 | 158 | ethanolamine utilization protein EutP; Provisional | 99.92 | |
| cd04105 | 203 | SR_beta Signal recognition particle receptor, beta | 99.92 | |
| KOG4252 | 246 | consensus GTP-binding protein [Signal transduction | 99.92 | |
| PRK09518 | 712 | bifunctional cytidylate kinase/GTPase Der; Reviewe | 99.91 | |
| PRK00089 | 292 | era GTPase Era; Reviewed | 99.91 | |
| PRK12298 | 390 | obgE GTPase CgtA; Reviewed | 99.91 | |
| COG1159 | 298 | Era GTPase [General function prediction only] | 99.91 | |
| PTZ00099 | 176 | rab6; Provisional | 99.91 | |
| PRK00093 | 435 | GTP-binding protein Der; Reviewed | 99.91 | |
| PRK11058 | 426 | GTPase HflX; Provisional | 99.91 | |
| cd04163 | 168 | Era Era subfamily. Era (E. coli Ras-like protein) | 99.91 | |
| TIGR03598 | 179 | GTPase_YsxC ribosome biogenesis GTP-binding protei | 99.9 | |
| TIGR03594 | 429 | GTPase_EngA ribosome-associated GTPase EngA. EngA | 99.9 | |
| TIGR00487 | 587 | IF-2 translation initiation factor IF-2. This mode | 99.9 | |
| TIGR00475 | 581 | selB selenocysteine-specific elongation factor Sel | 99.9 | |
| cd00880 | 163 | Era_like Era (E. coli Ras-like protein)-like. This | 99.9 | |
| TIGR01393 | 595 | lepA GTP-binding protein LepA. LepA (GUF1 in Sacca | 99.9 | |
| PRK00093 | 435 | GTP-binding protein Der; Reviewed | 99.9 | |
| PRK05306 | 787 | infB translation initiation factor IF-2; Validated | 99.9 | |
| PF08477 | 119 | Miro: Miro-like protein; InterPro: IPR013684 Mitoc | 99.9 | |
| COG1160 | 444 | Predicted GTPases [General function prediction onl | 99.9 | |
| CHL00189 | 742 | infB translation initiation factor 2; Provisional | 99.89 | |
| COG1160 | 444 | Predicted GTPases [General function prediction onl | 99.89 | |
| PRK09518 | 712 | bifunctional cytidylate kinase/GTPase Der; Reviewe | 99.89 | |
| KOG1673 | 205 | consensus Ras GTPases [General function prediction | 99.89 | |
| cd01896 | 233 | DRG The developmentally regulated GTP-binding prot | 99.89 | |
| PRK12317 | 425 | elongation factor 1-alpha; Reviewed | 99.89 | |
| COG0486 | 454 | ThdF Predicted GTPase [General function prediction | 99.89 | |
| cd04166 | 208 | CysN_ATPS CysN_ATPS subfamily. CysN, together with | 99.88 | |
| TIGR00483 | 426 | EF-1_alpha translation elongation factor EF-1 alph | 99.88 | |
| cd01884 | 195 | EF_Tu EF-Tu subfamily. This subfamily includes ort | 99.88 | |
| cd01883 | 219 | EF1_alpha Eukaryotic elongation factor 1 (EF1) alp | 99.88 | |
| TIGR03680 | 406 | eif2g_arch translation initiation factor 2 subunit | 99.88 | |
| PRK05433 | 600 | GTP-binding protein LepA; Provisional | 99.88 | |
| cd04168 | 237 | TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), T | 99.88 | |
| PF10662 | 143 | PduV-EutP: Ethanolamine utilisation - propanediol | 99.87 | |
| PRK04000 | 411 | translation initiation factor IF-2 subunit gamma; | 99.87 | |
| TIGR01394 | 594 | TypA_BipA GTP-binding protein TypA/BipA. This bact | 99.87 | |
| PRK09554 | 772 | feoB ferrous iron transport protein B; Reviewed | 99.87 | |
| TIGR00437 | 591 | feoB ferrous iron transporter FeoB. FeoB (773 amin | 99.87 | |
| cd04165 | 224 | GTPBP1_like GTPBP1-like. Mammalian GTP binding pro | 99.87 | |
| COG2229 | 187 | Predicted GTPase [General function prediction only | 99.87 | |
| cd01876 | 170 | YihA_EngB The YihA (EngB) subfamily. This subfamil | 99.87 | |
| TIGR00491 | 590 | aIF-2 translation initiation factor aIF-2/yIF-2. T | 99.87 | |
| PRK10218 | 607 | GTP-binding protein; Provisional | 99.86 | |
| PRK10512 | 614 | selenocysteinyl-tRNA-specific translation factor; | 99.86 | |
| PRK12736 | 394 | elongation factor Tu; Reviewed | 99.86 | |
| KOG1423 | 379 | consensus Ras-like GTPase ERA [Cell cycle control, | 99.85 | |
| PRK12735 | 396 | elongation factor Tu; Reviewed | 99.85 | |
| COG0218 | 200 | Predicted GTPase [General function prediction only | 99.85 | |
| cd04169 | 267 | RF3 RF3 subfamily. Peptide chain release factor 3 | 99.85 | |
| cd04104 | 197 | p47_IIGP_like p47 (47-kDa) family. The p47 GTPase | 99.84 | |
| TIGR00485 | 394 | EF-Tu translation elongation factor TU. This align | 99.84 | |
| CHL00071 | 409 | tufA elongation factor Tu | 99.84 | |
| PRK04004 | 586 | translation initiation factor IF-2; Validated | 99.84 | |
| KOG0077 | 193 | consensus Vesicle coat complex COPII, GTPase subun | 99.83 | |
| PRK00049 | 396 | elongation factor Tu; Reviewed | 99.83 | |
| cd04167 | 213 | Snu114p Snu114p subfamily. Snu114p is one of sever | 99.83 | |
| cd04170 | 268 | EF-G_bact Elongation factor G (EF-G) subfamily. Tr | 99.82 | |
| cd01886 | 270 | EF-G Elongation factor G (EF-G) subfamily. Translo | 99.82 | |
| KOG1489 | 366 | consensus Predicted GTP-binding protein (ODN super | 99.82 | |
| PLN03126 | 478 | Elongation factor Tu; Provisional | 99.82 | |
| PTZ00141 | 446 | elongation factor 1- alpha; Provisional | 99.82 | |
| PRK05124 | 474 | cysN sulfate adenylyltransferase subunit 1; Provis | 99.81 | |
| PLN00043 | 447 | elongation factor 1-alpha; Provisional | 99.81 | |
| PRK00741 | 526 | prfC peptide chain release factor 3; Provisional | 99.81 | |
| COG1084 | 346 | Predicted GTPase [General function prediction only | 99.81 | |
| TIGR02034 | 406 | CysN sulfate adenylyltransferase, large subunit. H | 99.81 | |
| COG0370 | 653 | FeoB Fe2+ transport system protein B [Inorganic io | 99.8 | |
| KOG0096 | 216 | consensus GTPase Ran/TC4/GSP1 (nuclear protein tra | 99.8 | |
| COG2262 | 411 | HflX GTPases [General function prediction only] | 99.8 | |
| PRK13351 | 687 | elongation factor G; Reviewed | 99.8 | |
| COG1163 | 365 | DRG Predicted GTPase [General function prediction | 99.8 | |
| KOG1707 | 625 | consensus Predicted Ras related/Rac-GTP binding pr | 99.8 | |
| PLN03127 | 447 | Elongation factor Tu; Provisional | 99.8 | |
| PRK05506 | 632 | bifunctional sulfate adenylyltransferase subunit 1 | 99.79 | |
| KOG3883 | 198 | consensus Ras family small GTPase [Signal transduc | 99.79 | |
| COG3596 | 296 | Predicted GTPase [General function prediction only | 99.79 | |
| PF04670 | 232 | Gtr1_RagA: Gtr1/RagA G protein conserved region; I | 99.79 | |
| PTZ00327 | 460 | eukaryotic translation initiation factor 2 gamma s | 99.78 | |
| KOG4423 | 229 | consensus GTP-binding protein-like, RAS superfamil | 99.78 | |
| TIGR00503 | 527 | prfC peptide chain release factor 3. This translat | 99.78 | |
| cd00066 | 317 | G-alpha G protein alpha subunit. The alpha subunit | 99.77 | |
| COG0536 | 369 | Obg Predicted GTPase [General function prediction | 99.77 | |
| COG0532 | 509 | InfB Translation initiation factor 2 (IF-2; GTPase | 99.76 | |
| PF01926 | 116 | MMR_HSR1: 50S ribosome-binding GTPase; InterPro: I | 99.76 | |
| smart00275 | 342 | G_alpha G protein alpha subunit. Subunit of G prot | 99.76 | |
| COG5256 | 428 | TEF1 Translation elongation factor EF-1alpha (GTPa | 99.76 | |
| cd01852 | 196 | AIG1 AIG1 (avrRpt2-induced gene 1). This represent | 99.76 | |
| KOG0462 | 650 | consensus Elongation factor-type GTP-binding prote | 99.75 | |
| cd01885 | 222 | EF2 EF2 (for archaea and eukarya). Translocation r | 99.75 | |
| KOG1191 | 531 | consensus Mitochondrial GTPase [Translation, ribos | 99.75 | |
| TIGR00484 | 689 | EF-G translation elongation factor EF-G. After pep | 99.75 | |
| PRK12739 | 691 | elongation factor G; Reviewed | 99.75 | |
| KOG0090 | 238 | consensus Signal recognition particle receptor, be | 99.75 | |
| cd01899 | 318 | Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg | 99.75 | |
| PF09439 | 181 | SRPRB: Signal recognition particle receptor beta s | 99.74 | |
| KOG1145 | 683 | consensus Mitochondrial translation initiation fac | 99.71 | |
| PRK09602 | 396 | translation-associated GTPase; Reviewed | 99.7 | |
| PRK12740 | 668 | elongation factor G; Reviewed | 99.69 | |
| COG4917 | 148 | EutP Ethanolamine utilization protein [Amino acid | 99.69 | |
| PRK00007 | 693 | elongation factor G; Reviewed | 99.69 | |
| PRK09866 | 741 | hypothetical protein; Provisional | 99.69 | |
| KOG0082 | 354 | consensus G-protein alpha subunit (small G protein | 99.68 | |
| COG0481 | 603 | LepA Membrane GTPase LepA [Cell envelope biogenesi | 99.68 | |
| cd01850 | 276 | CDC_Septin CDC/Septin. Septins are a conserved fam | 99.67 | |
| PRK13768 | 253 | GTPase; Provisional | 99.66 | |
| COG5257 | 415 | GCD11 Translation initiation factor 2, gamma subun | 99.65 | |
| PRK09435 | 332 | membrane ATPase/protein kinase; Provisional | 99.64 | |
| cd01853 | 249 | Toc34_like Toc34-like (Translocon at the Outer-env | 99.63 | |
| cd01882 | 225 | BMS1 Bms1. Bms1 is an essential, evolutionarily co | 99.63 | |
| KOG1532 | 366 | consensus GTPase XAB1, interacts with DNA repair p | 99.63 | |
| PRK14845 | 1049 | translation initiation factor IF-2; Provisional | 99.62 | |
| TIGR00991 | 313 | 3a0901s02IAP34 GTP-binding protein (Chloroplast En | 99.61 | |
| KOG1490 | 620 | consensus GTP-binding protein CRFG/NOG1 (ODN super | 99.61 | |
| KOG0458 | 603 | consensus Elongation factor 1 alpha [Translation, | 99.61 | |
| KOG3905 | 473 | consensus Dynein light intermediate chain [Cell mo | 99.59 | |
| PF05049 | 376 | IIGP: Interferon-inducible GTPase (IIGP); InterPro | 99.59 | |
| PF03029 | 238 | ATP_bind_1: Conserved hypothetical ATP binding pro | 99.58 | |
| PF04548 | 212 | AIG1: AIG1 family; InterPro: IPR006703 This entry | 99.57 | |
| COG4108 | 528 | PrfC Peptide chain release factor RF-3 [Translatio | 99.56 | |
| TIGR00490 | 720 | aEF-2 translation elongation factor aEF-2. This mo | 99.56 | |
| TIGR00101 | 199 | ureG urease accessory protein UreG. This model rep | 99.54 | |
| COG3276 | 447 | SelB Selenocysteine-specific translation elongatio | 99.54 | |
| COG2895 | 431 | CysN GTPases - Sulfate adenylate transferase subun | 99.52 | |
| KOG0461 | 522 | consensus Selenocysteine-specific elongation facto | 99.52 | |
| COG1217 | 603 | TypA Predicted membrane GTPase involved in stress | 99.51 | |
| TIGR00750 | 300 | lao LAO/AO transport system ATPase. Mutations have | 99.51 | |
| PF00503 | 389 | G-alpha: G-protein alpha subunit; InterPro: IPR001 | 99.51 | |
| PRK07560 | 731 | elongation factor EF-2; Reviewed | 99.5 | |
| PTZ00258 | 390 | GTP-binding protein; Provisional | 99.5 | |
| PLN00116 | 843 | translation elongation factor EF-2 subunit; Provis | 99.49 | |
| COG0050 | 394 | TufB GTPases - translation elongation factors [Tra | 99.49 | |
| TIGR00073 | 207 | hypB hydrogenase accessory protein HypB. HypB is i | 99.49 | |
| PF03308 | 266 | ArgK: ArgK protein; InterPro: IPR005129 Bacterial | 99.49 | |
| PTZ00416 | 836 | elongation factor 2; Provisional | 99.49 | |
| KOG1144 | 1064 | consensus Translation initiation factor 5B (eIF-5B | 99.47 | |
| PF05783 | 472 | DLIC: Dynein light intermediate chain (DLIC); Inte | 99.47 | |
| KOG1486 | 364 | consensus GTP-binding protein DRG2 (ODN superfamil | 99.44 | |
| PF00350 | 168 | Dynamin_N: Dynamin family; InterPro: IPR001401 Mem | 99.42 | |
| COG1703 | 323 | ArgK Putative periplasmic protein kinase ArgK and | 99.41 | |
| PRK09601 | 364 | GTP-binding protein YchF; Reviewed | 99.38 | |
| smart00010 | 124 | small_GTPase Small GTPase of the Ras superfamily; | 99.37 | |
| KOG1707 | 625 | consensus Predicted Ras related/Rac-GTP binding pr | 99.37 | |
| COG0480 | 697 | FusA Translation elongation factors (GTPases) [Tra | 99.37 | |
| PRK10463 | 290 | hydrogenase nickel incorporation protein HypB; Pro | 99.37 | |
| TIGR00993 | 763 | 3a0901s04IAP86 chloroplast protein import componen | 99.37 | |
| TIGR00157 | 245 | ribosome small subunit-dependent GTPase A. The Aqu | 99.37 | |
| PF00735 | 281 | Septin: Septin; InterPro: IPR000038 Septins consti | 99.37 | |
| TIGR02836 | 492 | spore_IV_A stage IV sporulation protein A. A compa | 99.34 | |
| KOG3887 | 347 | consensus Predicted small GTPase involved in nucle | 99.33 | |
| smart00053 | 240 | DYNc Dynamin, GTPase. Large GTPases that mediate v | 99.33 | |
| COG0378 | 202 | HypB Ni2+-binding GTPase involved in regulation of | 99.32 | |
| KOG0085 | 359 | consensus G protein subunit Galphaq/Galphay, small | 99.31 | |
| KOG0099 | 379 | consensus G protein subunit Galphas, small G prote | 99.28 | |
| KOG0410 | 410 | consensus Predicted GTP binding protein [General f | 99.24 | |
| COG0012 | 372 | Predicted GTPase, probable translation factor [Tra | 99.18 | |
| KOG3886 | 295 | consensus GTP-binding protein [Signal transduction | 99.18 | |
| KOG0460 | 449 | consensus Mitochondrial translation elongation fac | 99.16 | |
| cd01855 | 190 | YqeH YqeH. YqeH is an essential GTP-binding protei | 99.15 | |
| cd01900 | 274 | YchF YchF subfamily. YchF is a member of the Obg f | 99.15 | |
| KOG0466 | 466 | consensus Translation initiation factor 2, gamma s | 99.14 | |
| KOG0468 | 971 | consensus U5 snRNP-specific protein [Translation, | 99.14 | |
| cd01859 | 156 | MJ1464 MJ1464. This family represents archaeal GTP | 99.13 | |
| COG5192 | 1077 | BMS1 GTP-binding protein required for 40S ribosome | 99.12 | |
| KOG1487 | 358 | consensus GTP-binding protein DRG1 (ODN superfamil | 99.08 | |
| PRK12289 | 352 | GTPase RsgA; Reviewed | 99.07 | |
| COG5258 | 527 | GTPBP1 GTPase [General function prediction only] | 99.03 | |
| cd01858 | 157 | NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protei | 99.0 | |
| COG5019 | 373 | CDC3 Septin family protein [Cell division and chro | 98.99 | |
| KOG0705 | 749 | consensus GTPase-activating protein Centaurin gamm | 98.98 | |
| KOG1143 | 591 | consensus Predicted translation elongation factor | 98.97 | |
| cd01854 | 287 | YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtil | 98.97 | |
| PRK00098 | 298 | GTPase RsgA; Reviewed | 98.97 | |
| KOG1954 | 532 | consensus Endocytosis/signaling protein EHD1 [Sign | 98.96 | |
| KOG0467 | 887 | consensus Translation elongation factor 2/ribosome | 98.95 | |
| cd01858 | 157 | NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protei | 98.94 | |
| cd01857 | 141 | HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to t | 98.93 | |
| cd01849 | 155 | YlqF_related_GTPase YlqF-related GTPases. These pr | 98.92 | |
| cd01856 | 171 | YlqF YlqF. Proteins of the YlqF family contain all | 98.92 | |
| KOG2486 | 320 | consensus Predicted GTPase [General function predi | 98.91 | |
| PRK12288 | 347 | GTPase RsgA; Reviewed | 98.9 | |
| cd04178 | 172 | Nucleostemin_like Nucleostemin-like. Nucleostemin | 98.9 | |
| TIGR03596 | 276 | GTPase_YlqF ribosome biogenesis GTP-binding protei | 98.9 | |
| TIGR03597 | 360 | GTPase_YqeH ribosome biogenesis GTPase YqeH. This | 98.88 | |
| COG1618 | 179 | Predicted nucleotide kinase [Nucleotide transport | 98.87 | |
| KOG2655 | 366 | consensus Septin family protein (P-loop GTPase) [C | 98.87 | |
| KOG0448 | 749 | consensus Mitofusin 1 GTPase, involved in mitochon | 98.85 | |
| cd01856 | 171 | YlqF YlqF. Proteins of the YlqF family contain all | 98.82 | |
| TIGR00092 | 368 | GTP-binding protein YchF. This predicted GTP-bindi | 98.82 | |
| KOG1547 | 336 | consensus Septin CDC10 and related P-loop GTPases | 98.81 | |
| cd01855 | 190 | YqeH YqeH. YqeH is an essential GTP-binding protei | 98.81 | |
| KOG0447 | 980 | consensus Dynamin-like GTP binding protein [Genera | 98.79 | |
| TIGR03596 | 276 | GTPase_YlqF ribosome biogenesis GTP-binding protei | 98.77 | |
| PRK09563 | 287 | rbgA GTPase YlqF; Reviewed | 98.76 | |
| PRK09563 | 287 | rbgA GTPase YlqF; Reviewed | 98.76 | |
| cd01859 | 156 | MJ1464 MJ1464. This family represents archaeal GTP | 98.75 | |
| cd01851 | 224 | GBP Guanylate-binding protein (GBP), N-terminal do | 98.75 | |
| KOG0463 | 641 | consensus GTP-binding protein GP-1 [General functi | 98.74 | |
| KOG0459 | 501 | consensus Polypeptide release factor 3 [Translatio | 98.74 | |
| KOG1491 | 391 | consensus Predicted GTP-binding protein (ODN super | 98.72 | |
| cd01857 | 141 | HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to t | 98.72 | |
| KOG0465 | 721 | consensus Mitochondrial elongation factor [Transla | 98.71 | |
| PRK14974 | 336 | cell division protein FtsY; Provisional | 98.7 | |
| cd01849 | 155 | YlqF_related_GTPase YlqF-related GTPases. These pr | 98.69 | |
| PRK10416 | 318 | signal recognition particle-docking protein FtsY; | 98.68 | |
| COG1161 | 322 | Predicted GTPases [General function prediction onl | 98.68 | |
| TIGR00064 | 272 | ftsY signal recognition particle-docking protein F | 98.67 | |
| PF03193 | 161 | DUF258: Protein of unknown function, DUF258; Inter | 98.65 | |
| PRK12288 | 347 | GTPase RsgA; Reviewed | 98.59 | |
| PRK13796 | 365 | GTPase YqeH; Provisional | 98.57 | |
| cd03112 | 158 | CobW_like The function of this protein family is u | 98.56 | |
| KOG0464 | 753 | consensus Elongation factor G [Translation, riboso | 98.54 | |
| TIGR01425 | 429 | SRP54_euk signal recognition particle protein SRP5 | 98.51 | |
| TIGR03348 | 1169 | VI_IcmF type VI secretion protein IcmF. Members of | 98.51 | |
| PRK12289 | 352 | GTPase RsgA; Reviewed | 98.48 | |
| KOG3859 | 406 | consensus Septins (P-loop GTPases) [Cell cycle con | 98.45 | |
| TIGR00157 | 245 | ribosome small subunit-dependent GTPase A. The Aqu | 98.45 | |
| KOG1534 | 273 | consensus Putative transcription factor FET5 [Tran | 98.45 | |
| PRK01889 | 356 | GTPase RsgA; Reviewed | 98.44 | |
| COG1162 | 301 | Predicted GTPases [General function prediction onl | 98.43 | |
| cd03114 | 148 | ArgK-like The function of this protein family is u | 98.43 | |
| PF00448 | 196 | SRP54: SRP54-type protein, GTPase domain; InterPro | 98.38 | |
| PRK13796 | 365 | GTPase YqeH; Provisional | 98.37 | |
| KOG1424 | 562 | consensus Predicted GTP-binding protein MMR1 [Gene | 98.33 | |
| TIGR03597 | 360 | GTPase_YqeH ribosome biogenesis GTPase YqeH. This | 98.33 | |
| cd03115 | 173 | SRP The signal recognition particle (SRP) mediates | 98.33 | |
| PF02492 | 178 | cobW: CobW/HypB/UreG, nucleotide-binding domain; I | 98.33 | |
| PRK14722 | 374 | flhF flagellar biosynthesis regulator FlhF; Provis | 98.32 | |
| PRK10867 | 433 | signal recognition particle protein; Provisional | 98.31 | |
| COG0523 | 323 | Putative GTPases (G3E family) [General function pr | 98.31 | |
| TIGR00959 | 428 | ffh signal recognition particle protein. This mode | 98.27 | |
| PRK00098 | 298 | GTPase RsgA; Reviewed | 98.22 | |
| PRK11537 | 318 | putative GTP-binding protein YjiA; Provisional | 98.22 | |
| cd01854 | 287 | YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtil | 98.21 | |
| COG1419 | 407 | FlhF Flagellar GTP-binding protein [Cell motility | 98.21 | |
| PRK11889 | 436 | flhF flagellar biosynthesis regulator FlhF; Provis | 98.17 | |
| PF09547 | 492 | Spore_IV_A: Stage IV sporulation protein A (spore_ | 98.17 | |
| PRK14721 | 420 | flhF flagellar biosynthesis regulator FlhF; Provis | 98.13 | |
| PRK12727 | 559 | flagellar biosynthesis regulator FlhF; Provisional | 98.11 | |
| PRK12726 | 407 | flagellar biosynthesis regulator FlhF; Provisional | 98.07 | |
| PRK13695 | 174 | putative NTPase; Provisional | 98.04 | |
| PRK12723 | 388 | flagellar biosynthesis regulator FlhF; Provisional | 98.03 | |
| PF00005 | 137 | ABC_tran: ABC transporter This structure is on hol | 98.02 | |
| COG1126 | 240 | GlnQ ABC-type polar amino acid transport system, A | 98.01 | |
| PRK00771 | 437 | signal recognition particle protein Srp54; Provisi | 98.01 | |
| PRK12724 | 432 | flagellar biosynthesis regulator FlhF; Provisional | 98.01 | |
| cd01983 | 99 | Fer4_NifH The Fer4_NifH superfamily contains a var | 98.0 | |
| KOG0780 | 483 | consensus Signal recognition particle, subunit Srp | 97.97 | |
| KOG2484 | 435 | consensus GTPase [General function prediction only | 97.96 | |
| PF13207 | 121 | AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6 | 97.95 | |
| TIGR02475 | 341 | CobW cobalamin biosynthesis protein CobW. A broade | 97.95 | |
| COG1116 | 248 | TauB ABC-type nitrate/sulfonate/bicarbonate transp | 97.94 | |
| COG0541 | 451 | Ffh Signal recognition particle GTPase [Intracellu | 97.94 | |
| PF06858 | 58 | NOG1: Nucleolar GTP-binding protein 1 (NOG1); Inte | 97.94 | |
| PRK14723 | 767 | flhF flagellar biosynthesis regulator FlhF; Provis | 97.93 | |
| KOG0057 | 591 | consensus Mitochondrial Fe/S cluster exporter, ABC | 97.93 | |
| COG1162 | 301 | Predicted GTPases [General function prediction onl | 97.92 | |
| PRK06731 | 270 | flhF flagellar biosynthesis regulator FlhF; Valida | 97.91 | |
| COG3523 | 1188 | IcmF Type VI protein secretion system component Va | 97.91 | |
| PRK06995 | 484 | flhF flagellar biosynthesis regulator FlhF; Valida | 97.9 | |
| COG1117 | 253 | PstB ABC-type phosphate transport system, ATPase c | 97.9 | |
| COG3640 | 255 | CooC CO dehydrogenase maturation factor [Cell divi | 97.9 | |
| TIGR03574 | 249 | selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Mem | 97.9 | |
| COG1136 | 226 | SalX ABC-type antimicrobial peptide transport syst | 97.89 | |
| cd03110 | 179 | Fer4_NifH_child This protein family's function is | 97.88 | |
| KOG0469 | 842 | consensus Elongation factor 2 [Translation, riboso | 97.87 | |
| PF13555 | 62 | AAA_29: P-loop containing region of AAA domain | 97.87 | |
| PRK08118 | 167 | topology modulation protein; Reviewed | 97.86 | |
| cd03238 | 176 | ABC_UvrA The excision repair protein UvrA; Nucleot | 97.85 | |
| KOG1533 | 290 | consensus Predicted GTPase [General function predi | 97.85 | |
| PRK07261 | 171 | topology modulation protein; Provisional | 97.85 | |
| COG0552 | 340 | FtsY Signal recognition particle GTPase [Intracell | 97.84 | |
| COG4619 | 223 | ABC-type uncharacterized transport system, ATPase | 97.83 | |
| COG1120 | 258 | FepC ABC-type cobalamin/Fe3+-siderophores transpor | 97.83 | |
| COG0563 | 178 | Adk Adenylate kinase and related kinases [Nucleoti | 97.83 | |
| PRK05703 | 424 | flhF flagellar biosynthesis regulator FlhF; Valida | 97.82 | |
| PF13671 | 143 | AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1 | 97.8 | |
| cd03264 | 211 | ABC_drug_resistance_like ABC-type multidrug transp | 97.8 | |
| cd02038 | 139 | FleN-like FleN is a member of the Fer4_NifH superf | 97.78 | |
| cd00820 | 107 | PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPC | 97.78 | |
| cd00009 | 151 | AAA The AAA+ (ATPases Associated with a wide varie | 97.77 | |
| cd04178 | 172 | Nucleostemin_like Nucleostemin-like. Nucleostemin | 97.77 | |
| PF05729 | 166 | NACHT: NACHT domain | 97.74 | |
| cd02019 | 69 | NK Nucleoside/nucleotide kinase (NK) is a protein | 97.74 | |
| COG1124 | 252 | DppF ABC-type dipeptide/oligopeptide/nickel transp | 97.74 | |
| COG0529 | 197 | CysC Adenylylsulfate kinase and related kinases [I | 97.72 | |
| cd03255 | 218 | ABC_MJ0796_Lo1CDE_FtsE This family is comprised of | 97.72 | |
| TIGR00960 | 216 | 3a0501s02 Type II (General) Secretory Pathway (IIS | 97.72 | |
| PF13521 | 163 | AAA_28: AAA domain; PDB: 1LW7_A. | 97.72 | |
| PF03266 | 168 | NTPase_1: NTPase; InterPro: IPR004948 This entry r | 97.72 | |
| COG1134 | 249 | TagH ABC-type polysaccharide/polyol phosphate tran | 97.71 | |
| cd03261 | 235 | ABC_Org_Solvent_Resistant ABC (ATP-binding cassett | 97.71 | |
| cd03224 | 222 | ABC_TM1139_LivF_branched LivF (TM1139) is part of | 97.71 | |
| cd03226 | 205 | ABC_cobalt_CbiO_domain2 Domain II of the ABC compo | 97.71 | |
| TIGR02673 | 214 | FtsE cell division ATP-binding protein FtsE. This | 97.71 | |
| COG3839 | 338 | MalK ABC-type sugar transport systems, ATPase comp | 97.7 | |
| TIGR01166 | 190 | cbiO cobalt transport protein ATP-binding subunit. | 97.7 | |
| cd03229 | 178 | ABC_Class3 This class is comprised of all BPD (Bin | 97.7 | |
| TIGR03608 | 206 | L_ocin_972_ABC putative bacteriocin export ABC tra | 97.7 | |
| PRK15177 | 213 | Vi polysaccharide export ATP-binding protein VexC; | 97.69 | |
| cd03301 | 213 | ABC_MalK_N The N-terminal ATPase domain of the mal | 97.69 | |
| cd03293 | 220 | ABC_NrtD_SsuB_transporters NrtD and SsuB are the A | 97.69 | |
| cd03259 | 213 | ABC_Carb_Solutes_like ABC Carbohydrate and Solute | 97.69 | |
| KOG2485 | 335 | consensus Conserved ATP/GTP binding protein [Gener | 97.69 | |
| cd03265 | 220 | ABC_DrrA DrrA is the ATP-binding protein component | 97.69 | |
| COG3638 | 258 | ABC-type phosphate/phosphonate transport system, A | 97.69 | |
| cd03292 | 214 | ABC_FtsE_transporter FtsE is a hydrophilic nucleot | 97.69 | |
| PRK10751 | 173 | molybdopterin-guanine dinucleotide biosynthesis pr | 97.68 | |
| cd03216 | 163 | ABC_Carb_Monos_I This family represents the domain | 97.68 | |
| cd03225 | 211 | ABC_cobalt_CbiO_domain1 Domain I of the ABC compon | 97.68 | |
| cd03269 | 210 | ABC_putative_ATPase This subfamily is involved in | 97.68 | |
| KOG0054 | 1381 | consensus Multidrug resistance-associated protein/ | 97.67 | |
| cd03262 | 213 | ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP- | 97.67 | |
| PRK11248 | 255 | tauB taurine transporter ATP-binding subunit; Prov | 97.67 | |
| cd03221 | 144 | ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is | 97.66 | |
| cd03263 | 220 | ABC_subfamily_A The ABCA subfamily mediates the tr | 97.66 | |
| cd03260 | 227 | ABC_PstB_phosphate_transporter Phosphate uptake is | 97.66 | |
| cd02042 | 104 | ParA ParA and ParB of Caulobacter crescentus belon | 97.65 | |
| PRK13539 | 207 | cytochrome c biogenesis protein CcmA; Provisional | 97.65 | |
| TIGR02211 | 221 | LolD_lipo_ex lipoprotein releasing system, ATP-bin | 97.65 | |
| PRK13540 | 200 | cytochrome c biogenesis protein CcmA; Provisional | 97.65 | |
| TIGR00235 | 207 | udk uridine kinase. Model contains a number of lon | 97.65 | |
| PRK11629 | 233 | lolD lipoprotein transporter ATP-binding subunit; | 97.65 | |
| cd03230 | 173 | ABC_DR_subfamily_A This family of ATP-binding prot | 97.65 | |
| cd03218 | 232 | ABC_YhbG The ABC transporters belonging to the Yhb | 97.64 | |
| TIGR02315 | 243 | ABC_phnC phosphonate ABC transporter, ATP-binding | 97.64 | |
| TIGR01978 | 243 | sufC FeS assembly ATPase SufC. SufC is part of the | 97.64 | |
| KOG0781 | 587 | consensus Signal recognition particle receptor, al | 97.63 | |
| cd03257 | 228 | ABC_NikE_OppD_transporters The ABC transporter sub | 97.63 | |
| TIGR01189 | 198 | ccmA heme ABC exporter, ATP-binding protein CcmA. | 97.63 | |
| cd03258 | 233 | ABC_MetN_methionine_transporter MetN (also known a | 97.63 | |
| cd03219 | 236 | ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans | 97.63 |
| >KOG0084 consensus GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-37 Score=203.38 Aligned_cols=161 Identities=29% Similarity=0.468 Sum_probs=138.7
Q ss_pred ccccceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEE----EeCCEEEEEEecCCchhhHHhHHHHhcCCC
Q 030429 7 LFFKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKV----TKGNVTIKLWDLGGQRRFRTMWERYCRGVS 82 (177)
Q Consensus 7 ~~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~----~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d 82 (177)
....+.+||+++|+.|+|||+|+.||.++.|...+.+|++.++... +.+.+.+++|||+||++|++....++++++
T Consensus 4 ~~~dylFKiiliGds~VGKtCL~~Rf~~~~f~e~~~sTIGVDf~~rt~e~~gk~iKlQIWDTAGQERFrtit~syYR~ah 83 (205)
T KOG0084|consen 4 PEYDYLFKIILIGDSGVGKTCLLLRFKDDTFTESYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAH 83 (205)
T ss_pred cccceEEEEEEECCCCcChhhhhhhhccCCcchhhcceeeeEEEEEEeeecceEEEEEeeeccccHHHhhhhHhhccCCC
Confidence 3567789999999999999999999999999999999999887763 355689999999999999999999999999
Q ss_pred EEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccCH-----HHHHHHhCcccccCCcee-EEEeee
Q 030429 83 AILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSK-----QALVDQLGLESITDREVC-CYMISC 156 (177)
Q Consensus 83 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~-----~~~~~~~~~~~~~~~~~~-~~~~Sa 156 (177)
++|+|||+++.+||.++..|+.++..+.. .++|.++|+||+|+.+.... +++...++ .+ ++++||
T Consensus 84 Gii~vyDiT~~~SF~~v~~Wi~Ei~~~~~-~~v~~lLVGNK~Dl~~~~~v~~~~a~~fa~~~~--------~~~f~ETSA 154 (205)
T KOG0084|consen 84 GIIFVYDITKQESFNNVKRWIQEIDRYAS-ENVPKLLVGNKCDLTEKRVVSTEEAQEFADELG--------IPIFLETSA 154 (205)
T ss_pred eEEEEEEcccHHHhhhHHHHHHHhhhhcc-CCCCeEEEeeccccHhheecCHHHHHHHHHhcC--------Ccceeeccc
Confidence 99999999999999999999999977644 56899999999999764322 22233332 24 899999
Q ss_pred cCCCChHHHHHHHHHHhhhc
Q 030429 157 KDSINIDAVIDWLIKHSKTA 176 (177)
Q Consensus 157 ~~~~~i~~l~~~l~~~~~~~ 176 (177)
+++.|+++.|..+...++++
T Consensus 155 K~~~NVe~~F~~la~~lk~~ 174 (205)
T KOG0084|consen 155 KDSTNVEDAFLTLAKELKQR 174 (205)
T ss_pred CCccCHHHHHHHHHHHHHHh
Confidence 99999999999999988764
|
|
| >PLN00223 ADP-ribosylation factor; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-35 Score=201.72 Aligned_cols=167 Identities=34% Similarity=0.624 Sum_probs=144.0
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEeCCEEEEEEecCCchhhHHhHHHHhcCCCEEEEEE
Q 030429 9 FKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVV 88 (177)
Q Consensus 9 ~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~ 88 (177)
.++.+||+++|.+|||||||++++..+.+. ...+|.+.....++.+++.+++||+||++++...+..+++++|++++|+
T Consensus 14 ~~~~~ki~ivG~~~~GKTsl~~~l~~~~~~-~~~pt~g~~~~~~~~~~~~~~i~D~~Gq~~~~~~~~~~~~~a~~iI~V~ 92 (181)
T PLN00223 14 AKKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 92 (181)
T ss_pred CCCccEEEEECCCCCCHHHHHHHHccCCCc-cccCCcceeEEEEEECCEEEEEEECCCCHHHHHHHHHHhccCCEEEEEE
Confidence 456799999999999999999999877765 4568888887778888999999999999999999999999999999999
Q ss_pred eCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccCHHHHHHHhCcccccCCceeEEEeeecCCCChHHHHHH
Q 030429 89 DAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCKDSINIDAVIDW 168 (177)
Q Consensus 89 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~ 168 (177)
|+++++++.+...++..+.......+.|+++|+||+|+.+....+++.+.++......+.+.++++||++|+|++++|++
T Consensus 93 D~s~~~s~~~~~~~l~~~l~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~l~l~~~~~~~~~~~~~Sa~~g~gv~e~~~~ 172 (181)
T PLN00223 93 DSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDW 172 (181)
T ss_pred eCCcHHHHHHHHHHHHHHhcCHhhCCCCEEEEEECCCCCCCCCHHHHHHHhCccccCCCceEEEeccCCCCCCHHHHHHH
Confidence 99999999999888888876544457899999999999877777777777776544455566778999999999999999
Q ss_pred HHHHhhhc
Q 030429 169 LIKHSKTA 176 (177)
Q Consensus 169 l~~~~~~~ 176 (177)
|.+.+.++
T Consensus 173 l~~~~~~~ 180 (181)
T PLN00223 173 LSNNIANK 180 (181)
T ss_pred HHHHHhhc
Confidence 99987754
|
|
| >smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-35 Score=200.15 Aligned_cols=165 Identities=33% Similarity=0.621 Sum_probs=141.1
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEeCCEEEEEEecCCchhhHHhHHHHhcCCCEEEEEE
Q 030429 9 FKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVV 88 (177)
Q Consensus 9 ~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~ 88 (177)
.++.+||+++|++|||||||++++..+.+. .+.+|.+........+++.+++||+||+.++...+..+++++|++++|+
T Consensus 10 ~~~~~ki~l~G~~~~GKTsL~~~~~~~~~~-~~~~t~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~ad~ii~v~ 88 (175)
T smart00177 10 GNKEMRILMVGLDAAGKTTILYKLKLGESV-TTIPTIGFNVETVTYKNISFTVWDVGGQDKIRPLWRHYYTNTQGLIFVV 88 (175)
T ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcCCCC-CcCCccccceEEEEECCEEEEEEECCCChhhHHHHHHHhCCCCEEEEEE
Confidence 466799999999999999999999877764 4567888777777788899999999999999999999999999999999
Q ss_pred eCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccCHHHHHHHhCcccccCCceeEEEeeecCCCChHHHHHH
Q 030429 89 DAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCKDSINIDAVIDW 168 (177)
Q Consensus 89 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~ 168 (177)
|+++++++++...++..+.......+.|+++|+||+|+.+....+++.+.++......+.+.++++||++|.|++++|++
T Consensus 89 D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gv~e~~~~ 168 (175)
T smart00177 89 DSNDRDRIDEAREELHRMLNEDELRDAVILVFANKQDLPDAMKAAEITEKLGLHSIRDRNWYIQPTCATSGDGLYEGLTW 168 (175)
T ss_pred ECCCHHHHHHHHHHHHHHhhCHhhcCCcEEEEEeCcCcccCCCHHHHHHHhCccccCCCcEEEEEeeCCCCCCHHHHHHH
Confidence 99999999999999998876544457899999999999766556677777765555556677889999999999999999
Q ss_pred HHHHhh
Q 030429 169 LIKHSK 174 (177)
Q Consensus 169 l~~~~~ 174 (177)
|.+.+.
T Consensus 169 l~~~~~ 174 (175)
T smart00177 169 LSNNLK 174 (175)
T ss_pred HHHHhc
Confidence 988754
|
Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop). |
| >cd04149 Arf6 Arf6 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-35 Score=198.15 Aligned_cols=162 Identities=35% Similarity=0.631 Sum_probs=136.5
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEeCCEEEEEEecCCchhhHHhHHHHhcCCCEEEEEE
Q 030429 9 FKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVV 88 (177)
Q Consensus 9 ~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~ 88 (177)
.++.+||+++|.+|||||||++++..+.+. .+.+|.+.....+...++.+++||+||++++...+..++.++|++++|+
T Consensus 6 ~~~~~kv~i~G~~~~GKTsli~~l~~~~~~-~~~~t~g~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~a~~ii~v~ 84 (168)
T cd04149 6 GNKEMRILMLGLDAAGKTTILYKLKLGQSV-TTIPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVV 84 (168)
T ss_pred CCCccEEEEECcCCCCHHHHHHHHccCCCc-cccCCcccceEEEEECCEEEEEEECCCCHHHHHHHHHHhccCCEEEEEE
Confidence 356799999999999999999999876664 3567777777777778899999999999999999999999999999999
Q ss_pred eCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccCHHHHHHHhCcccccCCceeEEEeeecCCCChHHHHHH
Q 030429 89 DAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCKDSINIDAVIDW 168 (177)
Q Consensus 89 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~ 168 (177)
|++++.++.+...++..+.......+.|+++|+||+|+.+....+++.+.++........++++++||++|.|++++|++
T Consensus 85 D~t~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~SAk~g~gv~~~~~~ 164 (168)
T cd04149 85 DSADRDRIDEARQELHRIINDREMRDALLLVFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTW 164 (168)
T ss_pred eCCchhhHHHHHHHHHHHhcCHhhcCCcEEEEEECcCCccCCCHHHHHHHcCCCccCCCcEEEEEeeCCCCCChHHHHHH
Confidence 99999999999999888876544457899999999999765556666666654444445567899999999999999999
Q ss_pred HHH
Q 030429 169 LIK 171 (177)
Q Consensus 169 l~~ 171 (177)
|.+
T Consensus 165 l~~ 167 (168)
T cd04149 165 LSS 167 (168)
T ss_pred Hhc
Confidence 864
|
Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t |
| >PTZ00133 ADP-ribosylation factor; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-35 Score=200.12 Aligned_cols=168 Identities=33% Similarity=0.615 Sum_probs=142.2
Q ss_pred ccccceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEeCCEEEEEEecCCchhhHHhHHHHhcCCCEEEE
Q 030429 7 LFFKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILY 86 (177)
Q Consensus 7 ~~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~ 86 (177)
+..++.+||+++|++|||||||++++..+.+.. +.+|.+.....+...++.+++||+||+++++..+..+++++|++++
T Consensus 12 ~~~~~~~kv~lvG~~~vGKTsli~~~~~~~~~~-~~~T~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~ad~iI~ 90 (182)
T PTZ00133 12 LFGKKEVRILMVGLDAAGKTTILYKLKLGEVVT-TIPTIGFNVETVEYKNLKFTMWDVGGQDKLRPLWRHYYQNTNGLIF 90 (182)
T ss_pred hcCCCccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCccccceEEEEECCEEEEEEECCCCHhHHHHHHHHhcCCCEEEE
Confidence 345678999999999999999999998777754 5678787777777888999999999999999999999999999999
Q ss_pred EEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccCHHHHHHHhCcccccCCceeEEEeeecCCCChHHHH
Q 030429 87 VVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCKDSINIDAVI 166 (177)
Q Consensus 87 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~ 166 (177)
|+|++++.++.....++..+.......+.|+++|+||.|+.+....+++.+.++......+.+.++++||++|.|++++|
T Consensus 91 v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~l~~~~~~~~~~~~~~~Sa~tg~gv~e~~ 170 (182)
T PTZ00133 91 VVDSNDRERIGDAREELERMLSEDELRDAVLLVFANKQDLPNAMSTTEVTEKLGLHSVRQRNWYIQGCCATTAQGLYEGL 170 (182)
T ss_pred EEeCCCHHHHHHHHHHHHHHHhCHhhcCCCEEEEEeCCCCCCCCCHHHHHHHhCCCcccCCcEEEEeeeCCCCCCHHHHH
Confidence 99999999999998888887665444568999999999997665566677777665455556678899999999999999
Q ss_pred HHHHHHhhh
Q 030429 167 DWLIKHSKT 175 (177)
Q Consensus 167 ~~l~~~~~~ 175 (177)
++|.+.+.+
T Consensus 171 ~~l~~~i~~ 179 (182)
T PTZ00133 171 DWLSANIKK 179 (182)
T ss_pred HHHHHHHHH
Confidence 999987765
|
|
| >KOG0094 consensus GTPase Rab6/YPT6/Ryh1, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-36 Score=196.57 Aligned_cols=163 Identities=22% Similarity=0.341 Sum_probs=138.6
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEE----EeCCEEEEEEecCCchhhHHhHHHHhcCCCEEE
Q 030429 10 KQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKV----TKGNVTIKLWDLGGQRRFRTMWERYCRGVSAIL 85 (177)
Q Consensus 10 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~----~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i 85 (177)
-+.+|++++|+.++||||||+|+..+.+...+..|+++++... ....+++++|||+||++|+.+.+.|++++.++|
T Consensus 20 ~k~~KlVflGdqsVGKTslItRf~yd~fd~~YqATIGiDFlskt~~l~d~~vrLQlWDTAGQERFrslipsY~Rds~vav 99 (221)
T KOG0094|consen 20 LKKYKLVFLGDQSVGKTSLITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV 99 (221)
T ss_pred ceEEEEEEEccCccchHHHHHHHHHhhhcccccceeeeEEEEEEEEEcCcEEEEEEEecccHHHHhhhhhhhccCCeEEE
Confidence 3459999999999999999999999999999999999888763 345689999999999999999999999999999
Q ss_pred EEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccCHHHHHHHhCcccccCCceeEEEeeecCCCChHHH
Q 030429 86 YVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCKDSINIDAV 165 (177)
Q Consensus 86 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l 165 (177)
+|||+++..+|++..+|+.++.......+.-+++|+||.|+.+.... ...-+.......++.|.++||+.|.||+++
T Consensus 100 iVyDit~~~Sfe~t~kWi~dv~~e~gs~~viI~LVGnKtDL~dkrqv---s~eEg~~kAkel~a~f~etsak~g~NVk~l 176 (221)
T KOG0094|consen 100 IVYDITDRNSFENTSKWIEDVRRERGSDDVIIFLVGNKTDLSDKRQV---SIEEGERKAKELNAEFIETSAKAGENVKQL 176 (221)
T ss_pred EEEeccccchHHHHHHHHHHHHhccCCCceEEEEEcccccccchhhh---hHHHHHHHHHHhCcEEEEecccCCCCHHHH
Confidence 99999999999999999999998877667889999999999876332 211111222223347999999999999999
Q ss_pred HHHHHHHhhh
Q 030429 166 IDWLIKHSKT 175 (177)
Q Consensus 166 ~~~l~~~~~~ 175 (177)
|..|...+..
T Consensus 177 FrrIaa~l~~ 186 (221)
T KOG0094|consen 177 FRRIAAALPG 186 (221)
T ss_pred HHHHHHhccC
Confidence 9998887654
|
|
| >cd04150 Arf1_5_like Arf1-Arf5-like subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-35 Score=195.00 Aligned_cols=158 Identities=33% Similarity=0.637 Sum_probs=133.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEeCCEEEEEEecCCchhhHHhHHHHhcCCCEEEEEEeCCC
Q 030429 13 MELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAAD 92 (177)
Q Consensus 13 ~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~ 92 (177)
+||+++|.+|||||||++++..+.+. .+.+|.+.....+....+.+.+||+||++++...+..+++++|++++|+|+++
T Consensus 1 ~kv~~~G~~~~GKTsli~~l~~~~~~-~~~pt~g~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~ad~~i~v~D~~~ 79 (159)
T cd04150 1 MRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSND 79 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCc-ccCCCCCcceEEEEECCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEeCCC
Confidence 48999999999999999999877776 46677777776677788999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccCHHHHHHHhCcccccCCceeEEEeeecCCCChHHHHHHHHH
Q 030429 93 RDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCKDSINIDAVIDWLIK 171 (177)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~ 171 (177)
+.+++....++..+.........|+++++||+|+.+....++..+.++......+.+.++++||++|.|++++|++|.+
T Consensus 80 ~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sak~g~gv~~~~~~l~~ 158 (159)
T cd04150 80 RERIGEAREELQRMLNEDELRDAVLLVFANKQDLPNAMSAAEVTDKLGLHSLRNRNWYIQATCATSGDGLYEGLDWLSN 158 (159)
T ss_pred HHHHHHHHHHHHHHHhcHHhcCCCEEEEEECCCCCCCCCHHHHHHHhCccccCCCCEEEEEeeCCCCCCHHHHHHHHhc
Confidence 9999999998888876544456899999999999765445566666654444455667889999999999999999864
|
This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents |
| >KOG0092 consensus GTPase Rab5/YPT51 and related small G protein superfamily GTPases [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-36 Score=198.06 Aligned_cols=161 Identities=25% Similarity=0.423 Sum_probs=134.8
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeE--EEEEeCC--EEEEEEecCCchhhHHhHHHHhcCCCEEE
Q 030429 10 KQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNM--RKVTKGN--VTIKLWDLGGQRRFRTMWERYCRGVSAIL 85 (177)
Q Consensus 10 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~--~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~~i 85 (177)
...+||+++|..++|||||+.|+..+.|.....+|++--+ ..+..++ +.|.+|||+|+++|+++.+.|+++++++|
T Consensus 3 ~~~~KvvLLG~~~VGKSSlV~Rfvk~~F~e~~e~TIGaaF~tktv~~~~~~ikfeIWDTAGQERy~slapMYyRgA~AAi 82 (200)
T KOG0092|consen 3 TREFKVVLLGDSGVGKSSLVLRFVKDQFHENIEPTIGAAFLTKTVTVDDNTIKFEIWDTAGQERYHSLAPMYYRGANAAI 82 (200)
T ss_pred cceEEEEEECCCCCCchhhhhhhhhCccccccccccccEEEEEEEEeCCcEEEEEEEEcCCcccccccccceecCCcEEE
Confidence 4578999999999999999999999999998889988444 4444444 88999999999999999999999999999
Q ss_pred EEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccc--CHHHHHHHhCcccccCCceeEEEeeecCCCChH
Q 030429 86 YVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEAL--SKQALVDQLGLESITDREVCCYMISCKDSINID 163 (177)
Q Consensus 86 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 163 (177)
+|||+++.+||...+.|+.++-.... +++-+.+|+||+|+.+.. ..++..... ...+..+|++||++|.|++
T Consensus 83 vvYDit~~~SF~~aK~WvkeL~~~~~-~~~vialvGNK~DL~~~R~V~~~ea~~yA-----e~~gll~~ETSAKTg~Nv~ 156 (200)
T KOG0092|consen 83 VVYDITDEESFEKAKNWVKELQRQAS-PNIVIALVGNKADLLERREVEFEEAQAYA-----ESQGLLFFETSAKTGENVN 156 (200)
T ss_pred EEEecccHHHHHHHHHHHHHHHhhCC-CCeEEEEecchhhhhhcccccHHHHHHHH-----HhcCCEEEEEecccccCHH
Confidence 99999999999999999999977755 667788899999998732 222222222 2244579999999999999
Q ss_pred HHHHHHHHHhhhc
Q 030429 164 AVIDWLIKHSKTA 176 (177)
Q Consensus 164 ~l~~~l~~~~~~~ 176 (177)
++|..|.+.+...
T Consensus 157 ~if~~Ia~~lp~~ 169 (200)
T KOG0092|consen 157 EIFQAIAEKLPCS 169 (200)
T ss_pred HHHHHHHHhccCc
Confidence 9999999987653
|
|
| >cd04158 ARD1 ARD1 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-33 Score=190.25 Aligned_cols=161 Identities=30% Similarity=0.583 Sum_probs=134.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEeCCEEEEEEecCCchhhHHhHHHHhcCCCEEEEEEeCCCC
Q 030429 14 ELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAADR 93 (177)
Q Consensus 14 ~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~ 93 (177)
||+++|.+|||||||++++.++.+.. +.+|.+.....++..++.+++||+||+.++...+..++..+|++++|+|++++
T Consensus 1 ~vvlvG~~~~GKTsl~~~l~~~~~~~-~~~T~~~~~~~~~~~~~~i~l~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~s~~ 79 (169)
T cd04158 1 RVVTLGLDGAGKTTILFKLKQDEFMQ-PIPTIGFNVETVEYKNLKFTIWDVGGKHKLRPLWKHYYLNTQAVVFVVDSSHR 79 (169)
T ss_pred CEEEECCCCCCHHHHHHHHhcCCCCC-cCCcCceeEEEEEECCEEEEEEECCCChhcchHHHHHhccCCEEEEEEeCCcH
Confidence 68999999999999999999876654 67788877777888899999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccCHHHHHHHhCcccc-cCCceeEEEeeecCCCChHHHHHHHHHH
Q 030429 94 DSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESI-TDREVCCYMISCKDSINIDAVIDWLIKH 172 (177)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Sa~~~~~i~~l~~~l~~~ 172 (177)
.++++...|+..+.......+.|+++|+||+|+.+....++..+.+..... ..+.+.++++||++|.|++++|++|.+.
T Consensus 80 ~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~~f~~l~~~ 159 (169)
T cd04158 80 DRVSEAHSELAKLLTEKELRDALLLIFANKQDVAGALSVEEMTELLSLHKLCCGRSWYIQGCDARSGMGLYEGLDWLSRQ 159 (169)
T ss_pred HHHHHHHHHHHHHhcChhhCCCCEEEEEeCcCcccCCCHHHHHHHhCCccccCCCcEEEEeCcCCCCCCHHHHHHHHHHH
Confidence 999999999999876644456899999999999765555555555433222 1234578899999999999999999987
Q ss_pred hhh
Q 030429 173 SKT 175 (177)
Q Consensus 173 ~~~ 175 (177)
+..
T Consensus 160 ~~~ 162 (169)
T cd04158 160 LVA 162 (169)
T ss_pred Hhh
Confidence 654
|
ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra |
| >cd04120 Rab12 Rab12 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-34 Score=197.49 Aligned_cols=159 Identities=21% Similarity=0.364 Sum_probs=126.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEE--EEEeCC--EEEEEEecCCchhhHHhHHHHhcCCCEEEEEE
Q 030429 13 MELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMR--KVTKGN--VTIKLWDLGGQRRFRTMWERYCRGVSAILYVV 88 (177)
Q Consensus 13 ~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~--~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~ 88 (177)
+.|+++|..|||||||++++..+.+...+.+|.+..+. .+..++ +.+++|||+|+++|..++..+++++|++++||
T Consensus 1 ~~vvvlG~~gVGKTSli~r~~~~~f~~~~~~Ti~~~~~~~~i~~~~~~v~l~iwDtaGqe~~~~l~~~y~~~ad~iIlVf 80 (202)
T cd04120 1 LQVIIIGSRGVGKTSLMRRFTDDTFCEACKSGVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVY 80 (202)
T ss_pred CEEEEECcCCCCHHHHHHHHHhCCCCCcCCCcceeEEEEEEEEECCEEEEEEEEeCCCchhhHHHHHHHhcCCCEEEEEE
Confidence 46899999999999999999999998888888765543 345444 88999999999999999999999999999999
Q ss_pred eCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccCH-HHHHHHhCcccccCCceeEEEeeecCCCChHHHHH
Q 030429 89 DAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSK-QALVDQLGLESITDREVCCYMISCKDSINIDAVID 167 (177)
Q Consensus 89 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~ 167 (177)
|++++++|+++..|+..+... ...+.|+++|+||+|+.+.... .+..+.+... ..++.+++|||++|.|++++|+
T Consensus 81 Dvtd~~Sf~~l~~w~~~i~~~-~~~~~piilVgNK~DL~~~~~v~~~~~~~~a~~---~~~~~~~etSAktg~gV~e~F~ 156 (202)
T cd04120 81 DITKKETFDDLPKWMKMIDKY-ASEDAELLLVGNKLDCETDREISRQQGEKFAQQ---ITGMRFCEASAKDNFNVDEIFL 156 (202)
T ss_pred ECcCHHHHHHHHHHHHHHHHh-CCCCCcEEEEEECcccccccccCHHHHHHHHHh---cCCCEEEEecCCCCCCHHHHHH
Confidence 999999999999888766443 3357999999999998653221 1111111111 1234799999999999999999
Q ss_pred HHHHHhhh
Q 030429 168 WLIKHSKT 175 (177)
Q Consensus 168 ~l~~~~~~ 175 (177)
++.+.+.+
T Consensus 157 ~l~~~~~~ 164 (202)
T cd04120 157 KLVDDILK 164 (202)
T ss_pred HHHHHHHH
Confidence 99987654
|
Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic |
| >cd04121 Rab40 Rab40 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-34 Score=196.73 Aligned_cols=159 Identities=20% Similarity=0.340 Sum_probs=128.2
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEE--EEEeC--CEEEEEEecCCchhhHHhHHHHhcCCCEEE
Q 030429 10 KQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMR--KVTKG--NVTIKLWDLGGQRRFRTMWERYCRGVSAIL 85 (177)
Q Consensus 10 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~--~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i 85 (177)
...+||+++|.+|||||||+.++.++.+...+.++.+.... .+..+ .+.+++||++|++++..++..+++++|+++
T Consensus 4 ~~~~KivviG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~l~~~~~~~ad~il 83 (189)
T cd04121 4 DYLLKFLLVGDSDVGKGEILASLQDGSTESPYGYNMGIDYKTTTILLDGRRVKLQLWDTSGQGRFCTIFRSYSRGAQGII 83 (189)
T ss_pred CceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCcceeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhcCCCEEE
Confidence 45699999999999999999999988887776666654432 33333 488999999999999999999999999999
Q ss_pred EEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccc--CHHHHHHHhCcccccCCceeEEEeeecCCCChH
Q 030429 86 YVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEAL--SKQALVDQLGLESITDREVCCYMISCKDSINID 163 (177)
Q Consensus 86 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 163 (177)
+|||++++.+++++..|+..+.... ++.|+++|+||+|+.+.. ..++..+.. ...++++++|||++|.|++
T Consensus 84 lVfD~t~~~Sf~~~~~w~~~i~~~~--~~~piilVGNK~DL~~~~~v~~~~~~~~a-----~~~~~~~~e~SAk~g~~V~ 156 (189)
T cd04121 84 LVYDITNRWSFDGIDRWIKEIDEHA--PGVPKILVGNRLHLAFKRQVATEQAQAYA-----ERNGMTFFEVSPLCNFNIT 156 (189)
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhC--CCCCEEEEEECccchhccCCCHHHHHHHH-----HHcCCEEEEecCCCCCCHH
Confidence 9999999999999999999986543 478999999999996532 222222211 1234579999999999999
Q ss_pred HHHHHHHHHhhh
Q 030429 164 AVIDWLIKHSKT 175 (177)
Q Consensus 164 ~l~~~l~~~~~~ 175 (177)
++|++|.+.+..
T Consensus 157 ~~F~~l~~~i~~ 168 (189)
T cd04121 157 ESFTELARIVLM 168 (189)
T ss_pred HHHHHHHHHHHH
Confidence 999999987764
|
This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d |
| >KOG0394 consensus Ras-related GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-35 Score=191.35 Aligned_cols=168 Identities=24% Similarity=0.395 Sum_probs=137.8
Q ss_pred cccceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEE--EE--eCCEEEEEEecCCchhhHHhHHHHhcCCCE
Q 030429 8 FFKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRK--VT--KGNVTIKLWDLGGQRRFRTMWERYCRGVSA 83 (177)
Q Consensus 8 ~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~--~~--~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ 83 (177)
..+..+||+++|++|+|||||++++++..|...+..|++..+.+ +. ...+.+++|||+|+++|.++-..+++++|.
T Consensus 5 ~K~~lLKViiLGDsGVGKtSLmn~yv~~kF~~qykaTIgadFltKev~Vd~~~vtlQiWDTAGQERFqsLg~aFYRgaDc 84 (210)
T KOG0394|consen 5 RKRTLLKVIILGDSGVGKTSLMNQYVNKKFSQQYKATIGADFLTKEVQVDDRSVTLQIWDTAGQERFQSLGVAFYRGADC 84 (210)
T ss_pred CcccceEEEEeCCCCccHHHHHHHHHHHHHHHHhccccchhheeeEEEEcCeEEEEEEEecccHHHhhhcccceecCCce
Confidence 34567999999999999999999999999999999999855544 33 344789999999999999999999999999
Q ss_pred EEEEEeCCCCCCHHHHHHHHHHHHcCCCC---CCCcEEEEeeCCCcccccCHHHHHHHhCcccccCCceeEEEeeecCCC
Q 030429 84 ILYVVDAADRDSVPIARSELHELLMKPSL---SGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCKDSI 160 (177)
Q Consensus 84 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~---~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 160 (177)
+++|||++++.+|+.+..|..+++.+... ..-|+++++||+|+........-.+..+........+|||++|||+..
T Consensus 85 Cvlvydv~~~~Sfe~L~~Wr~EFl~qa~~~~Pe~FPFVilGNKiD~~~~~~r~VS~~~Aq~WC~s~gnipyfEtSAK~~~ 164 (210)
T KOG0394|consen 85 CVLVYDVNNPKSFENLENWRKEFLIQASPQDPETFPFVILGNKIDVDGGKSRQVSEKKAQTWCKSKGNIPYFETSAKEAT 164 (210)
T ss_pred EEEEeecCChhhhccHHHHHHHHHHhcCCCCCCcccEEEEcccccCCCCccceeeHHHHHHHHHhcCCceeEEecccccc
Confidence 99999999999999999999999887553 236999999999997754322222222223334457799999999999
Q ss_pred ChHHHHHHHHHHhhh
Q 030429 161 NIDAVIDWLIKHSKT 175 (177)
Q Consensus 161 ~i~~l~~~l~~~~~~ 175 (177)
|+++.|+.+.+.+..
T Consensus 165 NV~~AFe~ia~~aL~ 179 (210)
T KOG0394|consen 165 NVDEAFEEIARRALA 179 (210)
T ss_pred cHHHHHHHHHHHHHh
Confidence 999999999987653
|
|
| >cd04154 Arl2 Arl2 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-33 Score=190.19 Aligned_cols=161 Identities=32% Similarity=0.605 Sum_probs=134.2
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEeCCEEEEEEecCCchhhHHhHHHHhcCCCEEEEEEe
Q 030429 10 KQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVD 89 (177)
Q Consensus 10 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d 89 (177)
...++|+++|++|||||||++++.+..+ ....+|.+.....+..+++.+.+||+||++.+...+..++..+|++++|+|
T Consensus 12 ~~~~kv~ivG~~~~GKTsL~~~l~~~~~-~~~~~t~g~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d 90 (173)
T cd04154 12 EREMRILILGLDNAGKTTILKKLLGEDI-DTISPTLGFQIKTLEYEGYKLNIWDVGGQKTLRPYWRNYFESTDALIWVVD 90 (173)
T ss_pred CCccEEEEECCCCCCHHHHHHHHccCCC-CCcCCccccceEEEEECCEEEEEEECCCCHHHHHHHHHHhCCCCEEEEEEE
Confidence 4568999999999999999999997644 345567777777777788999999999999999888999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccCHHHHHHHhCcccccCCceeEEEeeecCCCChHHHHHHH
Q 030429 90 AADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCKDSINIDAVIDWL 169 (177)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l 169 (177)
++++.++.+...|+..+.......+.|+++|+||+|+.+....++..+.++........++++++||++|.|++++|+++
T Consensus 91 ~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l 170 (173)
T cd04154 91 SSDRLRLDDCKRELKELLQEERLAGATLLILANKQDLPGALSEEEIREALELDKISSHHWRIQPCSAVTGEGLLQGIDWL 170 (173)
T ss_pred CCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcccccCCCHHHHHHHhCccccCCCceEEEeccCCCCcCHHHHHHHH
Confidence 99999999988888888765444679999999999997765556666655543334456789999999999999999998
Q ss_pred HH
Q 030429 170 IK 171 (177)
Q Consensus 170 ~~ 171 (177)
.+
T Consensus 171 ~~ 172 (173)
T cd04154 171 VD 172 (173)
T ss_pred hc
Confidence 64
|
Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis. |
| >cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-34 Score=193.89 Aligned_cols=159 Identities=18% Similarity=0.264 Sum_probs=127.0
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEE-EEEeC--CEEEEEEecCCchhhHHhHHHHhcCCCEEEEEE
Q 030429 12 EMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMR-KVTKG--NVTIKLWDLGGQRRFRTMWERYCRGVSAILYVV 88 (177)
Q Consensus 12 ~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~ 88 (177)
.+||+++|.+|||||||++++.++.+...+.+|.+.... .+..+ .+.+++||+||+.++..++..++..+|++++||
T Consensus 2 ~~ki~vvG~~~vGKTsL~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~~ilv~ 81 (172)
T cd04141 2 EYKIVMLGAGGVGKSAVTMQFISHSFPDYHDPTIEDAYKQQARIDNEPALLDILDTAGQAEFTAMRDQYMRCGEGFIICY 81 (172)
T ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCCCcCCcccceEEEEEEECCEEEEEEEEeCCCchhhHHHhHHHhhcCCEEEEEE
Confidence 479999999999999999999999888777777764443 23333 478999999999999999999999999999999
Q ss_pred eCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccCH--HHHHHHhCcccccCCceeEEEeeecCCCChHHHH
Q 030429 89 DAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSK--QALVDQLGLESITDREVCCYMISCKDSINIDAVI 166 (177)
Q Consensus 89 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~ 166 (177)
|++++.++.....|+..+.......+.|+++|+||+|+.+.... ++.. .+. ...++++++|||++|.||+++|
T Consensus 82 d~~~~~Sf~~~~~~~~~i~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~-~~a----~~~~~~~~e~Sa~~~~~v~~~f 156 (172)
T cd04141 82 SVTDRHSFQEASEFKKLITRVRLTEDIPLVLVGNKVDLESQRQVTTEEGR-NLA----REFNCPFFETSAALRHYIDDAF 156 (172)
T ss_pred ECCchhHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhhhhcCccCHHHHH-HHH----HHhCCEEEEEecCCCCCHHHHH
Confidence 99999999999887766655433457999999999998653221 2221 111 1234589999999999999999
Q ss_pred HHHHHHhhh
Q 030429 167 DWLIKHSKT 175 (177)
Q Consensus 167 ~~l~~~~~~ 175 (177)
++|.+.+.+
T Consensus 157 ~~l~~~~~~ 165 (172)
T cd04141 157 HGLVREIRR 165 (172)
T ss_pred HHHHHHHHH
Confidence 999987764
|
Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign |
| >cd04153 Arl5_Arl8 Arl5/Arl8 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-33 Score=189.89 Aligned_cols=161 Identities=30% Similarity=0.578 Sum_probs=136.8
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEeCCEEEEEEecCCchhhHHhHHHHhcCCCEEEEEEe
Q 030429 10 KQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVD 89 (177)
Q Consensus 10 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d 89 (177)
++.++|+++|++|+|||||++++..+.+.. ..+|.+.....+..+++.+.+||+||+..+...+..+++++|++++|+|
T Consensus 13 ~~~~kv~~~G~~~~GKTsl~~~l~~~~~~~-~~~t~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~V~D 91 (174)
T cd04153 13 RKEYKVIIVGLDNAGKTTILYQFLLGEVVH-TSPTIGSNVEEIVYKNIRFLMWDIGGQESLRSSWNTYYTNTDAVILVID 91 (174)
T ss_pred CCccEEEEECCCCCCHHHHHHHHccCCCCC-cCCccccceEEEEECCeEEEEEECCCCHHHHHHHHHHhhcCCEEEEEEE
Confidence 457899999999999999999999877764 5677777777788889999999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccCHHHHHHHhCcccccCCceeEEEeeecCCCChHHHHHHH
Q 030429 90 AADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCKDSINIDAVIDWL 169 (177)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l 169 (177)
+++++++.....++..+.......+.|+++++||+|+.+....++..+.++........++++++||++|.|++++|++|
T Consensus 92 ~s~~~~~~~~~~~l~~~~~~~~~~~~p~viv~NK~Dl~~~~~~~~i~~~l~~~~~~~~~~~~~~~SA~~g~gi~e~~~~l 171 (174)
T cd04153 92 STDRERLPLTKEELYKMLAHEDLRKAVLLVLANKQDLKGAMTPAEISESLGLTSIRDHTWHIQGCCALTGEGLPEGLDWI 171 (174)
T ss_pred CCCHHHHHHHHHHHHHHHhchhhcCCCEEEEEECCCCCCCCCHHHHHHHhCcccccCCceEEEecccCCCCCHHHHHHHH
Confidence 99998898888888888665444578999999999997655566666776644444456689999999999999999999
Q ss_pred HH
Q 030429 170 IK 171 (177)
Q Consensus 170 ~~ 171 (177)
.+
T Consensus 172 ~~ 173 (174)
T cd04153 172 AS 173 (174)
T ss_pred hc
Confidence 75
|
Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date. |
| >KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-34 Score=191.93 Aligned_cols=164 Identities=24% Similarity=0.381 Sum_probs=136.7
Q ss_pred cccceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEE--E--eCCEEEEEEecCCchhhHHhHHHHhcCCCE
Q 030429 8 FFKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKV--T--KGNVTIKLWDLGGQRRFRTMWERYCRGVSA 83 (177)
Q Consensus 8 ~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~--~--~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ 83 (177)
.....+||+++|++|||||+|+.+|..+.+...+.+|+++++... . ...+.+++|||+||++|+.....|+++|+.
T Consensus 8 ~~d~~~kvlliGDs~vGKt~~l~rf~d~~f~~~~~sTiGIDFk~kti~l~g~~i~lQiWDtaGQerf~ti~~sYyrgA~g 87 (207)
T KOG0078|consen 8 DYDYLFKLLLIGDSGVGKTCLLLRFSDDSFNTSFISTIGIDFKIKTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMG 87 (207)
T ss_pred CcceEEEEEEECCCCCchhHhhhhhhhccCcCCccceEEEEEEEEEEEeCCeEEEEEEEEcccchhHHHHHHHHHhhcCe
Confidence 356779999999999999999999999999999999999777763 3 345789999999999999999999999999
Q ss_pred EEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccCH-HHHHHHhCcccccCCceeEEEeeecCCCCh
Q 030429 84 ILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSK-QALVDQLGLESITDREVCCYMISCKDSINI 162 (177)
Q Consensus 84 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i 162 (177)
+++|||+++..+|+++..|+..+-++ .....|.++|+||+|+...... .+.-+.+ +...++.|+++||++|.||
T Consensus 88 i~LvyDitne~Sfeni~~W~~~I~e~-a~~~v~~~LvGNK~D~~~~R~V~~e~ge~l----A~e~G~~F~EtSAk~~~NI 162 (207)
T KOG0078|consen 88 ILLVYDITNEKSFENIRNWIKNIDEH-ASDDVVKILVGNKCDLEEKRQVSKERGEAL----AREYGIKFFETSAKTNFNI 162 (207)
T ss_pred eEEEEEccchHHHHHHHHHHHHHHhh-CCCCCcEEEeeccccccccccccHHHHHHH----HHHhCCeEEEccccCCCCH
Confidence 99999999999999999988887555 4468999999999999773221 1222222 1122457999999999999
Q ss_pred HHHHHHHHHHhhhc
Q 030429 163 DAVIDWLIKHSKTA 176 (177)
Q Consensus 163 ~~l~~~l~~~~~~~ 176 (177)
++.|-.|.+.+.++
T Consensus 163 ~eaF~~La~~i~~k 176 (207)
T KOG0078|consen 163 EEAFLSLARDILQK 176 (207)
T ss_pred HHHHHHHHHHHHhh
Confidence 99999999988753
|
|
| >cd04157 Arl6 Arl6 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-33 Score=186.76 Aligned_cols=158 Identities=32% Similarity=0.664 Sum_probs=129.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC-CCCCCCCccceeEEEEEeCCEEEEEEecCCchhhHHhHHHHhcCCCEEEEEEeCCC
Q 030429 14 ELSLIGLQNAGKTSLVNTIATGG-YSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAAD 92 (177)
Q Consensus 14 ~i~i~G~~~~GKSsli~~l~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~ 92 (177)
+|+++|++|||||||++++.+.. +...+.+|.+.....+..+++.+.+||+||+.++...+..+++++|++++|+|+++
T Consensus 1 ~i~~vG~~~~GKTsl~~~l~~~~~~~~~~~~t~g~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~ 80 (162)
T cd04157 1 NILVVGLDNSGKTTIINQLKPENAQSQIIVPTVGFNVESFEKGNLSFTAFDMSGQGKYRGLWEHYYKNIQGIIFVIDSSD 80 (162)
T ss_pred CEEEECCCCCCHHHHHHHHcccCCCcceecCccccceEEEEECCEEEEEEECCCCHhhHHHHHHHHccCCEEEEEEeCCc
Confidence 58999999999999999999765 35566778887776677788999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHcCCC--CCCCcEEEEeeCCCcccccCHHHHHHHhCcccccCCceeEEEeeecCCCChHHHHHHHH
Q 030429 93 RDSVPIARSELHELLMKPS--LSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCKDSINIDAVIDWLI 170 (177)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~--~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~ 170 (177)
+.++.....++..+..... ..++|+++|+||+|+.+....++..+.++........+.++++||++|.|++++|++|.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~Sa~~g~gv~~~~~~l~ 160 (162)
T cd04157 81 RLRLVVVKDELELLLNHPDIKHRRVPILFFANKMDLPDALTAVKITQLLGLENIKDKPWHIFASNALTGEGLDEGVQWLQ 160 (162)
T ss_pred HHHHHHHHHHHHHHHcCcccccCCCCEEEEEeCccccCCCCHHHHHHHhCCccccCceEEEEEeeCCCCCchHHHHHHHh
Confidence 9999888888887765422 24689999999999977655555555554433233445789999999999999999986
Q ss_pred H
Q 030429 171 K 171 (177)
Q Consensus 171 ~ 171 (177)
+
T Consensus 161 ~ 161 (162)
T cd04157 161 A 161 (162)
T ss_pred c
Confidence 5
|
Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A |
| >cd04151 Arl1 Arl1 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-33 Score=184.72 Aligned_cols=157 Identities=39% Similarity=0.707 Sum_probs=128.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEeCCEEEEEEecCCchhhHHhHHHHhcCCCEEEEEEeCCCC
Q 030429 14 ELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAADR 93 (177)
Q Consensus 14 ~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~ 93 (177)
||+++|+++||||||++++..+.+. ...+|.+.....+...+..+++||+||+..+...+..+++.+|++++|+|++++
T Consensus 1 kv~lvG~~~~GKTsl~~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ii~v~d~~~~ 79 (158)
T cd04151 1 RILILGLDNAGKTTILYRLQLGEVV-TTIPTIGFNVETVTYKNLKFQVWDLGGQTSIRPYWRCYYSNTDAIIYVVDSTDR 79 (158)
T ss_pred CEEEECCCCCCHHHHHHHHccCCCc-CcCCccCcCeEEEEECCEEEEEEECCCCHHHHHHHHHHhcCCCEEEEEEECCCH
Confidence 6899999999999999999877665 345677776667777889999999999999999999999999999999999998
Q ss_pred CCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccCHHHHHHHhCcccccCCceeEEEeeecCCCChHHHHHHHHH
Q 030429 94 DSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCKDSINIDAVIDWLIK 171 (177)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~ 171 (177)
.++.....++..+.......+.|+++|+||+|+.+.....++.+.++.........+++++||++|.|++++|++|.+
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~ 157 (158)
T cd04151 80 DRLGTAKEELHAMLEEEELKGAVLLVFANKQDMPGALSEAEISEKLGLSELKDRTWSIFKTSAIKGEGLDEGMDWLVN 157 (158)
T ss_pred HHHHHHHHHHHHHHhchhhcCCcEEEEEeCCCCCCCCCHHHHHHHhCccccCCCcEEEEEeeccCCCCHHHHHHHHhc
Confidence 777777777776655443457899999999999765555566665554333344568999999999999999999975
|
Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability. |
| >cd04133 Rop_like Rop subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-33 Score=189.06 Aligned_cols=157 Identities=23% Similarity=0.323 Sum_probs=125.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEE-EE--eCCEEEEEEecCCchhhHHhHHHHhcCCCEEEEEEe
Q 030429 13 MELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRK-VT--KGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVD 89 (177)
Q Consensus 13 ~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~-~~--~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d 89 (177)
+||+++|++|||||||+.++..+.+...+.+|.+..... +. ...+.+.+|||+|++++......+++++|++++|||
T Consensus 2 ~kivv~G~~~vGKTsli~~~~~~~f~~~~~~Ti~~~~~~~~~~~~~~v~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilvyd 81 (176)
T cd04133 2 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVSVDGNTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFS 81 (176)
T ss_pred eEEEEECCCCCcHHHHHHHHhcCCCCCCCCCcceeeeEEEEEECCEEEEEEEEECCCCccccccchhhcCCCcEEEEEEE
Confidence 689999999999999999999999988888888644432 22 345889999999999999999999999999999999
Q ss_pred CCCCCCHHHH-HHHHHHHHcCCCCCCCcEEEEeeCCCccccc------------CHHHHHHHhCcccccCCce-eEEEee
Q 030429 90 AADRDSVPIA-RSELHELLMKPSLSGIPLLVLGNKIDKSEAL------------SKQALVDQLGLESITDREV-CCYMIS 155 (177)
Q Consensus 90 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~------------~~~~~~~~~~~~~~~~~~~-~~~~~S 155 (177)
++++++|+++ ..|+..+.... .+.|+++|+||+|+.+.. ..++..+ + ....+. ++++||
T Consensus 82 ~~~~~Sf~~~~~~w~~~i~~~~--~~~piilvgnK~Dl~~~~~~~~~~~~~~~v~~~~~~~-~----a~~~~~~~~~E~S 154 (176)
T cd04133 82 LISRASYENVLKKWVPELRHYA--PNVPIVLVGTKLDLRDDKQYLADHPGASPITTAQGEE-L----RKQIGAAAYIECS 154 (176)
T ss_pred cCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEeChhhccChhhhhhccCCCCCCHHHHHH-H----HHHcCCCEEEECC
Confidence 9999999998 57887775443 469999999999996531 1111111 1 111223 599999
Q ss_pred ecCCCChHHHHHHHHHHhhhc
Q 030429 156 CKDSINIDAVIDWLIKHSKTA 176 (177)
Q Consensus 156 a~~~~~i~~l~~~l~~~~~~~ 176 (177)
|++|.||+++|+.+.+.+.+.
T Consensus 155 Ak~~~nV~~~F~~~~~~~~~~ 175 (176)
T cd04133 155 SKTQQNVKAVFDAAIKVVLQP 175 (176)
T ss_pred CCcccCHHHHHHHHHHHHhcC
Confidence 999999999999999987543
|
The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example, |
| >cd01875 RhoG RhoG subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-33 Score=190.80 Aligned_cols=162 Identities=19% Similarity=0.252 Sum_probs=124.6
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEE---EEeCCEEEEEEecCCchhhHHhHHHHhcCCCEEEEEE
Q 030429 12 EMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRK---VTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVV 88 (177)
Q Consensus 12 ~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~---~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~ 88 (177)
.+||+++|++|||||||+.++..+.+...+.+|.+..... +....+.+++|||+|+++|..++..+++++|++++||
T Consensus 3 ~~ki~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~e~~~~l~~~~~~~a~~~ilvy 82 (191)
T cd01875 3 SIKCVVVGDGAVGKTCLLICYTTNAFPKEYIPTVFDNYSAQTAVDGRTVSLNLWDTAGQEEYDRLRTLSYPQTNVFIICF 82 (191)
T ss_pred cEEEEEECCCCCCHHHHHHHHHhCCCCcCCCCceEeeeEEEEEECCEEEEEEEEECCCchhhhhhhhhhccCCCEEEEEE
Confidence 5799999999999999999999999988888888754432 3334578999999999999999999999999999999
Q ss_pred eCCCCCCHHHHHH-HHHHHHcCCCCCCCcEEEEeeCCCcccccCHHHHHHHhCc---------cccc-CCceeEEEeeec
Q 030429 89 DAADRDSVPIARS-ELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGL---------ESIT-DREVCCYMISCK 157 (177)
Q Consensus 89 d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~---------~~~~-~~~~~~~~~Sa~ 157 (177)
|++++++|+++.. |...+... ..+.|+++|+||+|+.+.....+....... .... ...++++++||+
T Consensus 83 dit~~~Sf~~~~~~w~~~i~~~--~~~~piilvgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~e~SAk 160 (191)
T cd01875 83 SIASPSSYENVRHKWHPEVCHH--CPNVPILLVGTKKDLRNDADTLKKLKEQGQAPITPQQGGALAKQIHAVKYLECSAL 160 (191)
T ss_pred ECCCHHHHHHHHHHHHHHHHhh--CCCCCEEEEEeChhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCcEEEEeCCC
Confidence 9999999999975 55555433 247999999999999654221111111100 0111 122579999999
Q ss_pred CCCChHHHHHHHHHHhhh
Q 030429 158 DSINIDAVIDWLIKHSKT 175 (177)
Q Consensus 158 ~~~~i~~l~~~l~~~~~~ 175 (177)
+|.|++++|+++.+.+..
T Consensus 161 ~g~~v~e~f~~l~~~~~~ 178 (191)
T cd01875 161 NQDGVKEVFAEAVRAVLN 178 (191)
T ss_pred CCCCHHHHHHHHHHHHhc
Confidence 999999999999987653
|
RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin |
| >cd04127 Rab27A Rab27a subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-33 Score=190.02 Aligned_cols=160 Identities=20% Similarity=0.352 Sum_probs=129.3
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEE--EEe------------CCEEEEEEecCCchhhHHhHHH
Q 030429 11 QEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRK--VTK------------GNVTIKLWDLGGQRRFRTMWER 76 (177)
Q Consensus 11 ~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~--~~~------------~~~~~~~~D~~g~~~~~~~~~~ 76 (177)
+.+||+++|++|||||||++++.++.+...+.+|.+..... +.. ..+.+.+||+||++++...+..
T Consensus 3 ~~~ki~ivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~ 82 (180)
T cd04127 3 YLIKFLALGDSGVGKTSFLYQYTDNKFNPKFITTVGIDFREKRVVYNSSGPGGTLGRGQRIHLQLWDTAGQERFRSLTTA 82 (180)
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceEEEEEEEEEcCccccccccCCCEEEEEEEeCCChHHHHHHHHH
Confidence 56899999999999999999999999988888887755543 221 2478999999999999999999
Q ss_pred HhcCCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccC--HHHHHHHhCcccccCCceeEEEe
Q 030429 77 YCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALS--KQALVDQLGLESITDREVCCYMI 154 (177)
Q Consensus 77 ~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 154 (177)
+++++|++++|+|+++++++..+..|+..+.......+.|+++|+||+|+.+... .++..+.... .+.+++++
T Consensus 83 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~v~~~~~~~~~~~-----~~~~~~e~ 157 (180)
T cd04127 83 FFRDAMGFLLIFDLTNEQSFLNVRNWMSQLQTHAYCENPDIVLCGNKADLEDQRQVSEEQAKALADK-----YGIPYFET 157 (180)
T ss_pred HhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEeCccchhcCccCHHHHHHHHHH-----cCCeEEEE
Confidence 9999999999999999999999999998886654445789999999999865322 2222211111 12479999
Q ss_pred eecCCCChHHHHHHHHHHhhh
Q 030429 155 SCKDSINIDAVIDWLIKHSKT 175 (177)
Q Consensus 155 Sa~~~~~i~~l~~~l~~~~~~ 175 (177)
||++|.|++++|++|.+.+.+
T Consensus 158 Sak~~~~v~~l~~~l~~~~~~ 178 (180)
T cd04127 158 SAATGTNVEKAVERLLDLVMK 178 (180)
T ss_pred eCCCCCCHHHHHHHHHHHHHh
Confidence 999999999999999987654
|
The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated |
| >KOG0080 consensus GTPase Rab18, small G protein superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-34 Score=181.83 Aligned_cols=165 Identities=25% Similarity=0.412 Sum_probs=137.7
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEE----EEeCCEEEEEEecCCchhhHHhHHHHhcCCCEE
Q 030429 9 FKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRK----VTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAI 84 (177)
Q Consensus 9 ~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~----~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~ 84 (177)
....+||+++|+.|+|||||+.+|....|.+....|++.++.. +..+.+.+.+|||+|+++|+.+.+.|++++.++
T Consensus 8 ~~~t~KiLlIGeSGVGKSSLllrFv~~~fd~~~~~tIGvDFkvk~m~vdg~~~KlaiWDTAGqErFRtLTpSyyRgaqGi 87 (209)
T KOG0080|consen 8 YDTTFKILLIGESGVGKSSLLLRFVSNTFDDLHPTTIGVDFKVKVMQVDGKRLKLAIWDTAGQERFRTLTPSYYRGAQGI 87 (209)
T ss_pred cceeEEEEEEccCCccHHHHHHHHHhcccCccCCceeeeeEEEEEEEEcCceEEEEEEeccchHhhhccCHhHhccCcee
Confidence 3456999999999999999999999999998888888866654 345568899999999999999999999999999
Q ss_pred EEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccCHHHHHHHhCcccccCCceeEEEeeecCCCChHH
Q 030429 85 LYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCKDSINIDA 164 (177)
Q Consensus 85 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 164 (177)
|+|||++.+++|..+..|+.++-.+...+++-.++|+||+|..+. +.+....+..++....+-|+++||++.+|++.
T Consensus 88 IlVYDVT~Rdtf~kLd~W~~Eld~Ystn~diikmlVgNKiDkes~---R~V~reEG~kfAr~h~~LFiE~SAkt~~~V~~ 164 (209)
T KOG0080|consen 88 ILVYDVTSRDTFVKLDIWLKELDLYSTNPDIIKMLVGNKIDKESE---RVVDREEGLKFARKHRCLFIECSAKTRENVQC 164 (209)
T ss_pred EEEEEccchhhHHhHHHHHHHHHhhcCCccHhHhhhcccccchhc---ccccHHHHHHHHHhhCcEEEEcchhhhccHHH
Confidence 999999999999999999999988877778888999999997643 12222223333333445689999999999999
Q ss_pred HHHHHHHHhhhc
Q 030429 165 VIDWLIKHSKTA 176 (177)
Q Consensus 165 l~~~l~~~~~~~ 176 (177)
.|+.++.++.+.
T Consensus 165 ~FeelveKIi~t 176 (209)
T KOG0080|consen 165 CFEELVEKIIET 176 (209)
T ss_pred HHHHHHHHHhcC
Confidence 999999988653
|
|
| >cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-33 Score=186.25 Aligned_cols=157 Identities=23% Similarity=0.438 Sum_probs=128.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEE----eCCEEEEEEecCCchhhHHhHHHHhcCCCEEEEEE
Q 030429 13 MELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVT----KGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVV 88 (177)
Q Consensus 13 ~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~----~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~ 88 (177)
+||+++|++|||||||+++++.+.+...+.+|.+....... ...+.+.+|||||++.+......++..+|++++|+
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 80 (166)
T cd00877 1 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLDFHTNRGKIRFNVWDTAGQEKFGGLRDGYYIGGQCAIIMF 80 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCChhhccccHHHhcCCCEEEEEE
Confidence 58999999999999999999988888777888776655533 24578999999999998888888999999999999
Q ss_pred eCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccCHHHHHHHhCcccccCCceeEEEeeecCCCChHHHHHH
Q 030429 89 DAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCKDSINIDAVIDW 168 (177)
Q Consensus 89 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~ 168 (177)
|++++.++..+..|+..+..... +.|+++|+||+|+.+.....+..+.. ......++++||++|.|++++|++
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~--~~piiiv~nK~Dl~~~~~~~~~~~~~-----~~~~~~~~e~Sa~~~~~v~~~f~~ 153 (166)
T cd00877 81 DVTSRVTYKNVPNWHRDLVRVCG--NIPIVLCGNKVDIKDRKVKAKQITFH-----RKKNLQYYEISAKSNYNFEKPFLW 153 (166)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCC--CCcEEEEEEchhcccccCCHHHHHHH-----HHcCCEEEEEeCCCCCChHHHHHH
Confidence 99999999999999888866543 79999999999997433222221111 123457999999999999999999
Q ss_pred HHHHhhhc
Q 030429 169 LIKHSKTA 176 (177)
Q Consensus 169 l~~~~~~~ 176 (177)
|.+.+.+.
T Consensus 154 l~~~~~~~ 161 (166)
T cd00877 154 LARKLLGN 161 (166)
T ss_pred HHHHHHhc
Confidence 99887653
|
Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is |
| >cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-32 Score=183.74 Aligned_cols=157 Identities=34% Similarity=0.574 Sum_probs=134.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEeCCEEEEEEecCCchhhHHhHHHHhcCCCEEEEEEeCCCC
Q 030429 14 ELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAADR 93 (177)
Q Consensus 14 ~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~ 93 (177)
+|+++|++|||||||++++.+. +...+.+|.+.....+..+++.+++||+||+..++..+..+++.+|++++|+|++++
T Consensus 1 ~i~~~G~~~~GKTsl~~~l~~~-~~~~~~~t~g~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~a~~ii~V~D~s~~ 79 (167)
T cd04161 1 TLLTVGLDNAGKTTLVSALQGE-IPKKVAPTVGFTPTKLRLDKYEVCIFDLGGGANFRGIWVNYYAEAHGLVFVVDSSDD 79 (167)
T ss_pred CEEEECCCCCCHHHHHHHHhCC-CCccccCcccceEEEEEECCEEEEEEECCCcHHHHHHHHHHHcCCCEEEEEEECCch
Confidence 4899999999999999999865 666777888888778888899999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccCHHHHHHHhCccccc---CCceeEEEeeecCC------CChHH
Q 030429 94 DSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESIT---DREVCCYMISCKDS------INIDA 164 (177)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~Sa~~~------~~i~~ 164 (177)
.++.+...++..+.......+.|+++|+||+|+.+.....++.+.+...... ...+.+++|||++| .|+++
T Consensus 80 ~s~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~~~~~i~~~~~l~~~~~~~~~~~~~~~~Sa~~g~~~~~~~g~~~ 159 (167)
T cd04161 80 DRVQEVKEILRELLQHPRVSGKPILVLANKQDKKNALLGADVIEYLSLEKLVNENKSLCHIEPCSAIEGLGKKIDPSIVE 159 (167)
T ss_pred hHHHHHHHHHHHHHcCccccCCcEEEEEeCCCCcCCCCHHHHHHhcCcccccCCCCceEEEEEeEceeCCCCccccCHHH
Confidence 9999999999988776555678999999999998876667777766544432 23467888999998 89999
Q ss_pred HHHHHHH
Q 030429 165 VIDWLIK 171 (177)
Q Consensus 165 l~~~l~~ 171 (177)
.|+||.+
T Consensus 160 ~~~wl~~ 166 (167)
T cd04161 160 GLRWLLA 166 (167)
T ss_pred HHHHHhc
Confidence 9999975
|
Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene. |
| >PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-33 Score=187.06 Aligned_cols=164 Identities=37% Similarity=0.743 Sum_probs=147.8
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEeCCEEEEEEecCCchhhHHhHHHHhcCCCEEEEEE
Q 030429 9 FKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVV 88 (177)
Q Consensus 9 ~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~ 88 (177)
.++.++|+++|+.||||||+++++..+... ...||.+.....+..+++.+.+||++|+..++..|+.++.++|++++|+
T Consensus 11 ~~~~~~ililGl~~sGKTtll~~l~~~~~~-~~~pT~g~~~~~i~~~~~~~~~~d~gG~~~~~~~w~~y~~~~~~iIfVv 89 (175)
T PF00025_consen 11 KKKEIKILILGLDGSGKTTLLNRLKNGEIS-ETIPTIGFNIEEIKYKGYSLTIWDLGGQESFRPLWKSYFQNADGIIFVV 89 (175)
T ss_dssp TTSEEEEEEEESTTSSHHHHHHHHHSSSEE-EEEEESSEEEEEEEETTEEEEEEEESSSGGGGGGGGGGHTTESEEEEEE
T ss_pred cCcEEEEEEECCCccchHHHHHHhhhcccc-ccCcccccccceeeeCcEEEEEEeccccccccccceeeccccceeEEEE
Confidence 378899999999999999999999865443 3778999999999999999999999999999999999999999999999
Q ss_pred eCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccCHHHHHHHhCccccc-CCceeEEEeeecCCCChHHHHH
Q 030429 89 DAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESIT-DREVCCYMISCKDSINIDAVID 167 (177)
Q Consensus 89 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~~i~~l~~ 167 (177)
|+++++.+.+....+..++.......+|+++++||+|+.+....+++.+.+...... .+.+.++.|||.+|.|+++.++
T Consensus 90 Dssd~~~l~e~~~~L~~ll~~~~~~~~piLIl~NK~D~~~~~~~~~i~~~l~l~~l~~~~~~~v~~~sa~~g~Gv~e~l~ 169 (175)
T PF00025_consen 90 DSSDPERLQEAKEELKELLNDPELKDIPILILANKQDLPDAMSEEEIKEYLGLEKLKNKRPWSVFSCSAKTGEGVDEGLE 169 (175)
T ss_dssp ETTGGGGHHHHHHHHHHHHTSGGGTTSEEEEEEESTTSTTSSTHHHHHHHTTGGGTTSSSCEEEEEEBTTTTBTHHHHHH
T ss_pred ecccceeecccccchhhhcchhhcccceEEEEeccccccCcchhhHHHhhhhhhhcccCCceEEEeeeccCCcCHHHHHH
Confidence 999999999999999999887666789999999999998887788888888766655 6788899999999999999999
Q ss_pred HHHHHh
Q 030429 168 WLIKHS 173 (177)
Q Consensus 168 ~l~~~~ 173 (177)
||.+.+
T Consensus 170 WL~~~~ 175 (175)
T PF00025_consen 170 WLIEQI 175 (175)
T ss_dssp HHHHHH
T ss_pred HHHhcC
Confidence 999864
|
This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A .... |
| >KOG0098 consensus GTPase Rab2, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-33 Score=184.72 Aligned_cols=156 Identities=21% Similarity=0.320 Sum_probs=133.3
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEE----EEeCCEEEEEEecCCchhhHHhHHHHhcCCCEEE
Q 030429 10 KQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRK----VTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAIL 85 (177)
Q Consensus 10 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~----~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i 85 (177)
...+|++++|+.|||||+|+.+++...|.+.+..|+++.+.. ++...+.+++|||+|++.|++....|++++.+++
T Consensus 4 ~~~fKyIiiGd~gVGKSclllrf~~krF~~~hd~TiGvefg~r~~~id~k~IKlqiwDtaGqe~frsv~~syYr~a~Gal 83 (216)
T KOG0098|consen 4 AYLFKYIIIGDTGVGKSCLLLRFTDKRFQPVHDLTIGVEFGARMVTIDGKQIKLQIWDTAGQESFRSVTRSYYRGAAGAL 83 (216)
T ss_pred cceEEEEEECCCCccHHHHHHHHhccCccccccceeeeeeceeEEEEcCceEEEEEEecCCcHHHHHHHHHHhccCcceE
Confidence 356899999999999999999999999999999998865543 4456688999999999999999999999999999
Q ss_pred EEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccC-----HHHHHHHhCcccccCCceeEEEeeecCCC
Q 030429 86 YVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALS-----KQALVDQLGLESITDREVCCYMISCKDSI 160 (177)
Q Consensus 86 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 160 (177)
+|||++.+++|..+..|+.++.++. .++..+++++||+|+....+ -+.+.++.+ ..++++||++++
T Consensus 84 LVydit~r~sF~hL~~wL~D~rq~~-~~NmvImLiGNKsDL~~rR~Vs~EEGeaFA~ehg--------LifmETSakt~~ 154 (216)
T KOG0098|consen 84 LVYDITRRESFNHLTSWLEDARQHS-NENMVIMLIGNKSDLEARREVSKEEGEAFAREHG--------LIFMETSAKTAE 154 (216)
T ss_pred EEEEccchhhHHHHHHHHHHHHHhc-CCCcEEEEEcchhhhhccccccHHHHHHHHHHcC--------ceeehhhhhhhh
Confidence 9999999999999999999997664 47889999999999965432 233444443 378899999999
Q ss_pred ChHHHHHHHHHHhh
Q 030429 161 NIDAVIDWLIKHSK 174 (177)
Q Consensus 161 ~i~~l~~~l~~~~~ 174 (177)
|++|.|......+-
T Consensus 155 ~VEEaF~nta~~Iy 168 (216)
T KOG0098|consen 155 NVEEAFINTAKEIY 168 (216)
T ss_pred hHHHHHHHHHHHHH
Confidence 99999998877653
|
|
| >cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-33 Score=188.08 Aligned_cols=164 Identities=17% Similarity=0.237 Sum_probs=125.6
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEE-EEE--eCCEEEEEEecCCchhhHHhHHHHhcCCCEEEE
Q 030429 10 KQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMR-KVT--KGNVTIKLWDLGGQRRFRTMWERYCRGVSAILY 86 (177)
Q Consensus 10 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~--~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~ 86 (177)
...+||+++|++|||||||++++..+.+...+.+|.+.... .+. ...+.+++|||+|+++|....+.+++++|++++
T Consensus 3 ~~~~KivvvGd~~vGKTsli~~~~~~~f~~~~~pT~~~~~~~~~~~~~~~~~l~iwDtaG~e~~~~~~~~~~~~ad~~il 82 (182)
T cd04172 3 NVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLI 82 (182)
T ss_pred cceEEEEEECCCCCCHHHHHHHHHhCCCCCccCCceeeeeEEEEEECCEEEEEEEEECCCchhhHhhhhhhcCCCCEEEE
Confidence 45789999999999999999999999998888888764443 233 345789999999999999999999999999999
Q ss_pred EEeCCCCCCHHHH-HHHHHHHHcCCCCCCCcEEEEeeCCCcccccCH---------HHHHHHhCcccccCCc-eeEEEee
Q 030429 87 VVDAADRDSVPIA-RSELHELLMKPSLSGIPLLVLGNKIDKSEALSK---------QALVDQLGLESITDRE-VCCYMIS 155 (177)
Q Consensus 87 v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~---------~~~~~~~~~~~~~~~~-~~~~~~S 155 (177)
|||++++.+|+++ ..|+..+.... +..|+++|+||+|+.+.... ..+....+.......+ .+|++||
T Consensus 83 vyDit~~~Sf~~~~~~w~~~i~~~~--~~~piilVgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~E~S 160 (182)
T cd04172 83 CFDISRPETLDSVLKKWKGEIQEFC--PNTKMLLVGCKSDLRTDLTTLVELSNHRQTPVSYDQGANMAKQIGAATYIECS 160 (182)
T ss_pred EEECCCHHHHHHHHHHHHHHHHHHC--CCCCEEEEeEChhhhcChhhHHHHHhcCCCCCCHHHHHHHHHHcCCCEEEECC
Confidence 9999999999997 67777765543 46899999999998542100 0000000111111123 3799999
Q ss_pred ecCCCC-hHHHHHHHHHHhhh
Q 030429 156 CKDSIN-IDAVIDWLIKHSKT 175 (177)
Q Consensus 156 a~~~~~-i~~l~~~l~~~~~~ 175 (177)
|++|.| |+++|+.+.+.+.+
T Consensus 161 Ak~~~n~v~~~F~~~~~~~~~ 181 (182)
T cd04172 161 ALQSENSVRDIFHVATLACVN 181 (182)
T ss_pred cCCCCCCHHHHHHHHHHHHhc
Confidence 999998 99999999986543
|
Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight |
| >cd04128 Spg1 Spg1p | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-33 Score=188.25 Aligned_cols=161 Identities=25% Similarity=0.435 Sum_probs=126.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEE--EEEeC--CEEEEEEecCCchhhHHhHHHHhcCCCEEEEEE
Q 030429 13 MELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMR--KVTKG--NVTIKLWDLGGQRRFRTMWERYCRGVSAILYVV 88 (177)
Q Consensus 13 ~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~--~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~ 88 (177)
+||+++|.+|||||||+++++++.+...+.+|.+.... .+..+ .+.+.+||++|++++...+..+++++|++++||
T Consensus 1 ~Ki~vlG~~~vGKTsLi~~~~~~~f~~~~~~T~g~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~iilv~ 80 (182)
T cd04128 1 LKIGLLGDAQIGKTSLMVKYVEGEFDEDYIQTLGVNFMEKTISIRGTEITFSIWDLGGQREFINMLPLVCNDAVAILFMF 80 (182)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCchhHHHhhHHHCcCCCEEEEEE
Confidence 58999999999999999999999998888888886653 34444 478999999999999999999999999999999
Q ss_pred eCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccc---CHHHHHHHhCcccccCCceeEEEeeecCCCChHHH
Q 030429 89 DAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEAL---SKQALVDQLGLESITDREVCCYMISCKDSINIDAV 165 (177)
Q Consensus 89 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l 165 (177)
|++++.+++++..|+..+..... ...| ++|+||+|+.... ..+...+.. .......+++++++||++|.|++++
T Consensus 81 D~t~~~s~~~i~~~~~~~~~~~~-~~~p-ilVgnK~Dl~~~~~~~~~~~~~~~~-~~~a~~~~~~~~e~SAk~g~~v~~l 157 (182)
T cd04128 81 DLTRKSTLNSIKEWYRQARGFNK-TAIP-ILVGTKYDLFADLPPEEQEEITKQA-RKYAKAMKAPLIFCSTSHSINVQKI 157 (182)
T ss_pred ECcCHHHHHHHHHHHHHHHHhCC-CCCE-EEEEEchhccccccchhhhhhHHHH-HHHHHHcCCEEEEEeCCCCCCHHHH
Confidence 99999999999999888865432 3466 5789999985321 111111111 1111222357999999999999999
Q ss_pred HHHHHHHhhhc
Q 030429 166 IDWLIKHSKTA 176 (177)
Q Consensus 166 ~~~l~~~~~~~ 176 (177)
|+++.+.+.+.
T Consensus 158 f~~l~~~l~~~ 168 (182)
T cd04128 158 FKIVLAKAFDL 168 (182)
T ss_pred HHHHHHHHHhc
Confidence 99999887653
|
Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are |
| >cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-32 Score=184.23 Aligned_cols=155 Identities=35% Similarity=0.629 Sum_probs=132.5
Q ss_pred EEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEeCCEEEEEEecCCchhhHHhHHHHhcCCCEEEEEEeCCCCC
Q 030429 15 LSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAADRD 94 (177)
Q Consensus 15 i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~ 94 (177)
|+++|++|||||||++++.++.+...+.+|.+.....+..+++.+.+||+||+.++...+..+++++|++++|+|++++.
T Consensus 2 i~ivG~~~vGKTsli~~~~~~~~~~~~~pt~g~~~~~i~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~t~~~ 81 (164)
T cd04162 2 ILVLGLDGAGKTSLLHSLSSERSLESVVPTTGFNSVAIPTQDAIMELLEIGGSQNLRKYWKRYLSGSQGLIFVVDSADSE 81 (164)
T ss_pred EEEECCCCCCHHHHHHHHhcCCCcccccccCCcceEEEeeCCeEEEEEECCCCcchhHHHHHHHhhCCEEEEEEECCCHH
Confidence 79999999999999999998888777888888777777788899999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccCHHHHHHHhCcccc-cCCceeEEEeeecC------CCChHHHHH
Q 030429 95 SVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESI-TDREVCCYMISCKD------SINIDAVID 167 (177)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Sa~~------~~~i~~l~~ 167 (177)
++.....|+..+.... .++|+++|+||+|+.......++.+.++.... ....+.++++||++ ++|++++|+
T Consensus 82 s~~~~~~~l~~~~~~~--~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~Sa~~~~s~~~~~~v~~~~~ 159 (164)
T cd04162 82 RLPLARQELHQLLQHP--PDLPLVVLANKQDLPAARSVQEIHKELELEPIARGRRWILQGTSLDDDGSPSRMEAVKDLLS 159 (164)
T ss_pred HHHHHHHHHHHHHhCC--CCCcEEEEEeCcCCcCCCCHHHHHHHhCChhhcCCCceEEEEeeecCCCChhHHHHHHHHHH
Confidence 9999988888886543 57999999999999776666666555544443 34567889999988 999999999
Q ss_pred HHHH
Q 030429 168 WLIK 171 (177)
Q Consensus 168 ~l~~ 171 (177)
.++.
T Consensus 160 ~~~~ 163 (164)
T cd04162 160 QLIN 163 (164)
T ss_pred HHhc
Confidence 8864
|
Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date. |
| >cd04107 Rab32_Rab38 Rab38/Rab32 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-32 Score=190.23 Aligned_cols=159 Identities=26% Similarity=0.378 Sum_probs=126.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEE--EEEe---CCEEEEEEecCCchhhHHhHHHHhcCCCEEEEE
Q 030429 13 MELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMR--KVTK---GNVTIKLWDLGGQRRFRTMWERYCRGVSAILYV 87 (177)
Q Consensus 13 ~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~--~~~~---~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v 87 (177)
+||+++|++|||||||+++|+++.+...+.+|.+.... .+.. ..+.+.+|||||++++...+..+++++|++++|
T Consensus 1 ~KivivG~~~vGKTsli~~l~~~~~~~~~~~t~~~d~~~~~v~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~a~~~ilv 80 (201)
T cd04107 1 LKVLVIGDLGVGKTSIIKRYVHGIFSQHYKATIGVDFALKVIEWDPNTVVRLQLWDIAGQERFGGMTRVYYRGAVGAIIV 80 (201)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCCCEEEEEEEECCCchhhhhhHHHHhCCCCEEEEE
Confidence 58999999999999999999998888888888775433 2333 357899999999999999999999999999999
Q ss_pred EeCCCCCCHHHHHHHHHHHHcCC---CCCCCcEEEEeeCCCccc--ccCHHHHHHHhCcccccCCceeEEEeeecCCCCh
Q 030429 88 VDAADRDSVPIARSELHELLMKP---SLSGIPLLVLGNKIDKSE--ALSKQALVDQLGLESITDREVCCYMISCKDSINI 162 (177)
Q Consensus 88 ~d~~~~~~~~~~~~~~~~~~~~~---~~~~~~~iiv~nK~D~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i 162 (177)
||++++++++.+..|+..+.... ...++|+++|+||+|+.+ ....++..+..... ....++++||++|.|+
T Consensus 81 ~D~t~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~----~~~~~~e~Sak~~~~v 156 (201)
T cd04107 81 FDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPCLLLANKCDLKKRLAKDGEQMDQFCKEN----GFIGWFETSAKEGINI 156 (201)
T ss_pred EECCCHHHHHHHHHHHHHHHHhhcccCCCCCcEEEEEECCCcccccccCHHHHHHHHHHc----CCceEEEEeCCCCCCH
Confidence 99999999999998887765432 235689999999999963 22233332222211 1146999999999999
Q ss_pred HHHHHHHHHHhhh
Q 030429 163 DAVIDWLIKHSKT 175 (177)
Q Consensus 163 ~~l~~~l~~~~~~ 175 (177)
+++|++|.+.+.+
T Consensus 157 ~e~f~~l~~~l~~ 169 (201)
T cd04107 157 EEAMRFLVKNILA 169 (201)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999988764
|
Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. |
| >cd04122 Rab14 Rab14 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-33 Score=187.59 Aligned_cols=158 Identities=20% Similarity=0.298 Sum_probs=126.8
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEE--EEe--CCEEEEEEecCCchhhHHhHHHHhcCCCEEEEE
Q 030429 12 EMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRK--VTK--GNVTIKLWDLGGQRRFRTMWERYCRGVSAILYV 87 (177)
Q Consensus 12 ~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~--~~~--~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v 87 (177)
.+||+++|++|||||||++++.++.+...+.+|.+..... +.. ..+.+.+||+||++++...+..+++++|++++|
T Consensus 2 ~~ki~iiG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv 81 (166)
T cd04122 2 IFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVNGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMV 81 (166)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCCCCCcccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEEEE
Confidence 3799999999999999999999998887777776655432 333 347889999999999999999999999999999
Q ss_pred EeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccC--HHHHHHHhCcccccCCceeEEEeeecCCCChHHH
Q 030429 88 VDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALS--KQALVDQLGLESITDREVCCYMISCKDSINIDAV 165 (177)
Q Consensus 88 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l 165 (177)
+|++++++++.+..|+..+... ..++.|+++|+||+|+.+... .++..+... ...++++++||++|.|++++
T Consensus 82 ~d~~~~~s~~~~~~~~~~~~~~-~~~~~~iiiv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~e~Sa~~~~~i~e~ 155 (166)
T cd04122 82 YDITRRSTYNHLSSWLTDARNL-TNPNTVIFLIGNKADLEAQRDVTYEEAKQFAD-----ENGLLFLECSAKTGENVEDA 155 (166)
T ss_pred EECCCHHHHHHHHHHHHHHHHh-CCCCCeEEEEEECcccccccCcCHHHHHHHHH-----HcCCEEEEEECCCCCCHHHH
Confidence 9999999999999998877543 235689999999999865432 222222211 12347999999999999999
Q ss_pred HHHHHHHhhh
Q 030429 166 IDWLIKHSKT 175 (177)
Q Consensus 166 ~~~l~~~~~~ 175 (177)
|+.+.+.+.+
T Consensus 156 f~~l~~~~~~ 165 (166)
T cd04122 156 FLETAKKIYQ 165 (166)
T ss_pred HHHHHHHHhh
Confidence 9999987754
|
Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT |
| >cd04152 Arl4_Arl7 Arl4/Arl7 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-32 Score=185.72 Aligned_cols=164 Identities=28% Similarity=0.515 Sum_probs=129.2
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEe-----CCEEEEEEecCCchhhHHhHHHHhcCCCEEE
Q 030429 11 QEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTK-----GNVTIKLWDLGGQRRFRTMWERYCRGVSAIL 85 (177)
Q Consensus 11 ~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~-----~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i 85 (177)
+.+||+++|.+|||||||++++..+.+... .+|.+........ .++.+.+|||||++++...+..+++.+|+++
T Consensus 2 ~~~kv~~vG~~~~GKTsli~~~~~~~~~~~-~~t~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii 80 (183)
T cd04152 2 QSLHIVMLGLDSAGKTTVLYRLKFNEFVNT-VPTKGFNTEKIKVSLGNSKGITFHFWDVGGQEKLRPLWKSYTRCTDGIV 80 (183)
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCcCCc-CCccccceeEEEeeccCCCceEEEEEECCCcHhHHHHHHHHhccCCEEE
Confidence 468999999999999999999998776544 4666555444332 4689999999999999999999999999999
Q ss_pred EEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccCHHHHHHHhCcccc-cCCceeEEEeeecCCCChHH
Q 030429 86 YVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESI-TDREVCCYMISCKDSINIDA 164 (177)
Q Consensus 86 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Sa~~~~~i~~ 164 (177)
+|+|++++.++.....++..+.......+.|+++|+||+|+.+....++..+.++.... .....+++++||++|.|+++
T Consensus 81 ~v~D~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~ 160 (183)
T cd04152 81 FVVDSVDVERMEEAKTELHKITRFSENQGVPVLVLANKQDLPNALSVSEVEKLLALHELSASTPWHVQPACAIIGEGLQE 160 (183)
T ss_pred EEEECCCHHHHHHHHHHHHHHHhhhhcCCCcEEEEEECcCccccCCHHHHHHHhCccccCCCCceEEEEeecccCCCHHH
Confidence 99999998888888888877765544457899999999999765444554444432222 12345789999999999999
Q ss_pred HHHHHHHHhhh
Q 030429 165 VIDWLIKHSKT 175 (177)
Q Consensus 165 l~~~l~~~~~~ 175 (177)
++++|.+.+.+
T Consensus 161 l~~~l~~~l~~ 171 (183)
T cd04152 161 GLEKLYEMILK 171 (183)
T ss_pred HHHHHHHHHHH
Confidence 99999988754
|
Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily. |
| >KOG0075 consensus GTP-binding ADP-ribosylation factor-like protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-33 Score=176.00 Aligned_cols=170 Identities=75% Similarity=1.227 Sum_probs=161.5
Q ss_pred ccccceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEeCCEEEEEEecCCchhhHHhHHHHhcCCCEEEE
Q 030429 7 LFFKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILY 86 (177)
Q Consensus 7 ~~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~ 86 (177)
...+..+.+.++|..+||||||+|....+.+.++..+|.+++.+.++.+++.+.+||+||+++|+++|..|.+++++++|
T Consensus 15 ~f~k~emel~lvGLq~sGKtt~Vn~ia~g~~~edmiptvGfnmrk~tkgnvtiklwD~gGq~rfrsmWerycR~v~aivY 94 (186)
T KOG0075|consen 15 SFWKEEMELSLVGLQNSGKTTLVNVIARGQYLEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRGVSAIVY 94 (186)
T ss_pred HHHHheeeEEEEeeccCCcceEEEEEeeccchhhhcccccceeEEeccCceEEEEEecCCCccHHHHHHHHhhcCcEEEE
Confidence 44567889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccCHHHHHHHhCcccccCCceeEEEeeecCCCChHHHH
Q 030429 87 VVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCKDSINIDAVI 166 (177)
Q Consensus 87 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~ 166 (177)
|+|+++++..+..+..+..++......++|+++.+||.|+........+.+++++.....+.+.+|.+|+++..|++.+.
T Consensus 95 ~VDaad~~k~~~sr~EL~~LL~k~~l~gip~LVLGnK~d~~~AL~~~~li~rmgL~sitdREvcC~siScke~~Nid~~~ 174 (186)
T KOG0075|consen 95 VVDAADPDKLEASRSELHDLLDKPSLTGIPLLVLGNKIDLPGALSKIALIERMGLSSITDREVCCFSISCKEKVNIDITL 174 (186)
T ss_pred EeecCCcccchhhHHHHHHHhcchhhcCCcEEEecccccCcccccHHHHHHHhCccccccceEEEEEEEEcCCccHHHHH
Confidence 99999999999999999999999888899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhc
Q 030429 167 DWLIKHSKTA 176 (177)
Q Consensus 167 ~~l~~~~~~~ 176 (177)
+||.+.-+..
T Consensus 175 ~Wli~hsk~~ 184 (186)
T KOG0075|consen 175 DWLIEHSKSL 184 (186)
T ss_pred HHHHHHhhhh
Confidence 9999876543
|
|
| >smart00178 SAR Sar1p-like members of the Ras-family of small GTPases | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-32 Score=185.49 Aligned_cols=162 Identities=31% Similarity=0.555 Sum_probs=137.2
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEeCCEEEEEEecCCchhhHHhHHHHhcCCCEEEEEEe
Q 030429 10 KQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVD 89 (177)
Q Consensus 10 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d 89 (177)
++.++|+++|.+|||||||++++.++.+.. ..+|.+.....+..+++.+.+||+||+..++..+..++.++|++++|+|
T Consensus 15 ~~~~~i~ivG~~~~GKTsli~~l~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~ad~ii~vvD 93 (184)
T smart00178 15 NKHAKILFLGLDNAGKTTLLHMLKNDRLAQ-HQPTQHPTSEELAIGNIKFTTFDLGGHQQARRLWKDYFPEVNGIVYLVD 93 (184)
T ss_pred cccCEEEEECCCCCCHHHHHHHHhcCCCcc-cCCccccceEEEEECCEEEEEEECCCCHHHHHHHHHHhCCCCEEEEEEE
Confidence 677999999999999999999999776543 3566666667777788999999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccCHHHHHHHhCccccc-------CCceeEEEeeecCCCCh
Q 030429 90 AADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESIT-------DREVCCYMISCKDSINI 162 (177)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~Sa~~~~~i 162 (177)
+++++++.....++..+.......++|+++|+||+|+......+++.+.++..... .+...+++|||++|.|+
T Consensus 94 ~~~~~~~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~~~~~i~~~l~l~~~~~~~~~~~~~~~~i~~~Sa~~~~g~ 173 (184)
T smart00178 94 AYDKERFAESKRELDALLSDEELATVPFLILGNKIDAPYAASEDELRYALGLTNTTGSKGKVGVRPLEVFMCSVVRRMGY 173 (184)
T ss_pred CCcHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCCCCHHHHHHHcCCCcccccccccCCceeEEEEeecccCCCh
Confidence 99999898888888887765444578999999999997766677777777654422 25667999999999999
Q ss_pred HHHHHHHHHH
Q 030429 163 DAVIDWLIKH 172 (177)
Q Consensus 163 ~~l~~~l~~~ 172 (177)
++++++|...
T Consensus 174 ~~~~~wl~~~ 183 (184)
T smart00178 174 GEGFKWLSQY 183 (184)
T ss_pred HHHHHHHHhh
Confidence 9999999865
|
Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus. |
| >cd04126 Rab20 Rab20 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-32 Score=190.16 Aligned_cols=160 Identities=24% Similarity=0.415 Sum_probs=127.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEeCCEEEEEEecCCchhhHHhHHHHhcCCCEEEEEEeCCC
Q 030429 13 MELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAAD 92 (177)
Q Consensus 13 ~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~ 92 (177)
+||+++|.+|||||||++++.++.+.. ..+|.+..+.......+.+.+||++|++.+...+..+++.+|++++|||+++
T Consensus 1 ~KIvivG~~~vGKTSLi~r~~~~~f~~-~~~Tig~~~~~~~~~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~IlV~Dvt~ 79 (220)
T cd04126 1 LKVVLLGDMNVGKTSLLHRYMERRFKD-TVSTVGGAFYLKQWGPYNISIWDTAGREQFHGLGSMYCRGAAAVILTYDVSN 79 (220)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCCCC-CCCccceEEEEEEeeEEEEEEEeCCCcccchhhHHHHhccCCEEEEEEECCC
Confidence 589999999999999999999988865 5677777666666677899999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccc---------------------CHH---HHHHHhCcc------
Q 030429 93 RDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEAL---------------------SKQ---ALVDQLGLE------ 142 (177)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~---------------------~~~---~~~~~~~~~------ 142 (177)
+.+|+.+..|+..+... .....|+++|+||+|+.+.. ..+ .+.+.....
T Consensus 80 ~~Sf~~l~~~~~~l~~~-~~~~~piIlVgNK~DL~~~~~~~~~~~~~~~~~~~~~~r~v~~~e~~~~a~~~~~~~~~~~~ 158 (220)
T cd04126 80 VQSLEELEDRFLGLTDT-ANEDCLFAVVGNKLDLTEEGALAGQEKDAGDRVSPEDQRQVTLEDAKAFYKRINKYKMLDED 158 (220)
T ss_pred HHHHHHHHHHHHHHHHh-cCCCCcEEEEEECcccccccccccccccccccccccccccCCHHHHHHHHHHhCcccccccc
Confidence 99999999999888654 23568999999999986510 111 122222100
Q ss_pred cccCCceeEEEeeecCCCChHHHHHHHHHHhh
Q 030429 143 SITDREVCCYMISCKDSINIDAVIDWLIKHSK 174 (177)
Q Consensus 143 ~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~ 174 (177)
.......+|++|||++|.||+++|+.+++.+.
T Consensus 159 ~~~~~~~~~~E~SA~tg~~V~elf~~i~~~~~ 190 (220)
T cd04126 159 LSPAAEKMCFETSAKTGYNVDELFEYLFNLVL 190 (220)
T ss_pred ccccccceEEEeeCCCCCCHHHHHHHHHHHHH
Confidence 00012257999999999999999999998765
|
Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo |
| >cd04136 Rap_like Rap-like subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-33 Score=186.83 Aligned_cols=158 Identities=20% Similarity=0.320 Sum_probs=124.1
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCcccee-EEEEEeC--CEEEEEEecCCchhhHHhHHHHhcCCCEEEEEE
Q 030429 12 EMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFN-MRKVTKG--NVTIKLWDLGGQRRFRTMWERYCRGVSAILYVV 88 (177)
Q Consensus 12 ~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~-~~~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~ 88 (177)
.+||+++|++|||||||++++.++.+...+.+|.+.. ...+..+ .+.+++|||||++++...+..+++++|++++|+
T Consensus 1 ~~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~ 80 (163)
T cd04136 1 EYKVVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQIEVDGQQCMLEILDTAGTEQFTAMRDLYIKNGQGFVLVY 80 (163)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCCCCcccCCchhhhEEEEEEECCEEEEEEEEECCCccccchHHHHHhhcCCEEEEEE
Confidence 3699999999999999999999888877776766522 2223333 467889999999999999999999999999999
Q ss_pred eCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccCH-HHHHHHhCcccccCCceeEEEeeecCCCChHHHHH
Q 030429 89 DAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSK-QALVDQLGLESITDREVCCYMISCKDSINIDAVID 167 (177)
Q Consensus 89 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~ 167 (177)
|++++.+++....|+..+.......+.|+++|+||+|+.+.... .+....+.. ..+.+++++||++|.|++++|+
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~----~~~~~~~~~Sa~~~~~v~~l~~ 156 (163)
T cd04136 81 SITSQSSFNDLQDLREQILRVKDTENVPMVLVGNKCDLEDERVVSREEGQALAR----QWGCPFYETSAKSKINVDEVFA 156 (163)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceecHHHHHHHHH----HcCCeEEEecCCCCCCHHHHHH
Confidence 99999999999999888876544467899999999998653221 111111211 1124799999999999999999
Q ss_pred HHHHHh
Q 030429 168 WLIKHS 173 (177)
Q Consensus 168 ~l~~~~ 173 (177)
++.+.+
T Consensus 157 ~l~~~~ 162 (163)
T cd04136 157 DLVRQI 162 (163)
T ss_pred HHHHhc
Confidence 998764
|
The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres. |
| >cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-32 Score=180.58 Aligned_cols=157 Identities=38% Similarity=0.714 Sum_probs=135.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEeCCEEEEEEecCCchhhHHhHHHHhcCCCEEEEEEeCCCC
Q 030429 14 ELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAADR 93 (177)
Q Consensus 14 ~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~ 93 (177)
||+++|.+|||||||++++.++. .....++.+.....+....+.+.+||+||+..+...+..+++++|++++|+|++++
T Consensus 1 ki~iiG~~~~GKssli~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~D~~~~ 79 (158)
T cd00878 1 RILILGLDGAGKTTILYKLKLGE-VVTTIPTIGFNVETVEYKNVSFTVWDVGGQDKIRPLWKHYYENTNGIIFVVDSSDR 79 (158)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCC-CCCCCCCcCcceEEEEECCEEEEEEECCCChhhHHHHHHHhccCCEEEEEEECCCH
Confidence 68999999999999999999776 34556677777777888889999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccCHHHHHHHhCcccccCCceeEEEeeecCCCChHHHHHHHHH
Q 030429 94 DSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCKDSINIDAVIDWLIK 171 (177)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~ 171 (177)
+++.....++..+.......+.|+++|+||+|+......++..+.++........++++++||++|.|++++|++|..
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~~l~~ 157 (158)
T cd00878 80 ERIEEAKEELHKLLNEEELKGVPLLIFANKQDLPGALSVSELIEKLGLEKILGRRWHIQPCSAVTGDGLDEGLDWLLQ 157 (158)
T ss_pred HHHHHHHHHHHHHHhCcccCCCcEEEEeeccCCccccCHHHHHHhhChhhccCCcEEEEEeeCCCCCCHHHHHHHHhh
Confidence 999999999888877655567999999999999877666677777665544456678999999999999999999875
|
Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu |
| >cd04175 Rap1 Rap1 subgroup | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-32 Score=183.79 Aligned_cols=158 Identities=20% Similarity=0.327 Sum_probs=125.7
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEE-EEEeC--CEEEEEEecCCchhhHHhHHHHhcCCCEEEEEE
Q 030429 12 EMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMR-KVTKG--NVTIKLWDLGGQRRFRTMWERYCRGVSAILYVV 88 (177)
Q Consensus 12 ~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~ 88 (177)
++||+++|.+|||||||+++++.+.+...+.+|.+.... .+..+ .+.+.+|||||++++...+..+++++|++++|+
T Consensus 1 ~~ki~~~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~ 80 (164)
T cd04175 1 EYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFVLVY 80 (164)
T ss_pred CcEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheEEEEEEECCEEEEEEEEECCCcccchhHHHHHHhhCCEEEEEE
Confidence 369999999999999999999988887776676653322 23333 567889999999999999999999999999999
Q ss_pred eCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccC--HHHHHHHhCcccccCCceeEEEeeecCCCChHHHH
Q 030429 89 DAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALS--KQALVDQLGLESITDREVCCYMISCKDSINIDAVI 166 (177)
Q Consensus 89 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~ 166 (177)
|.+++.+++....|+..+.......+.|+++|+||+|+.+... .++. +.+.. ...++++++||++|.|++++|
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~-~~~~~----~~~~~~~~~Sa~~~~~v~~~~ 155 (164)
T cd04175 81 SITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQG-QNLAR----QWGCAFLETSAKAKINVNEIF 155 (164)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcchhccEEcHHHH-HHHHH----HhCCEEEEeeCCCCCCHHHHH
Confidence 9999999999999999887655556799999999999965322 1211 11111 112479999999999999999
Q ss_pred HHHHHHhh
Q 030429 167 DWLIKHSK 174 (177)
Q Consensus 167 ~~l~~~~~ 174 (177)
+++.+.+.
T Consensus 156 ~~l~~~l~ 163 (164)
T cd04175 156 YDLVRQIN 163 (164)
T ss_pred HHHHHHhh
Confidence 99998764
|
The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n |
| >cd01874 Cdc42 Cdc42 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-32 Score=185.64 Aligned_cols=159 Identities=19% Similarity=0.224 Sum_probs=122.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEE-EEEeCC--EEEEEEecCCchhhHHhHHHHhcCCCEEEEEEe
Q 030429 13 MELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMR-KVTKGN--VTIKLWDLGGQRRFRTMWERYCRGVSAILYVVD 89 (177)
Q Consensus 13 ~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d 89 (177)
+||+++|.+|||||||++++.++.+...+.+|.+.... .+..++ +.+++||++|++++...+..+++++|++++|||
T Consensus 2 ~ki~vvG~~~vGKTsl~~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilv~d 81 (175)
T cd01874 2 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFS 81 (175)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeEEEEEECCEEEEEEEEECCCccchhhhhhhhcccCCEEEEEEE
Confidence 68999999999999999999999998888888775443 334444 789999999999999888889999999999999
Q ss_pred CCCCCCHHHHHH-HHHHHHcCCCCCCCcEEEEeeCCCcccccCHHHHHHHhC---------cccc-cCCceeEEEeeecC
Q 030429 90 AADRDSVPIARS-ELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLG---------LESI-TDREVCCYMISCKD 158 (177)
Q Consensus 90 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~---------~~~~-~~~~~~~~~~Sa~~ 158 (177)
++++++++++.. |+..+.... ++.|+++|+||+|+.+.....+...... .... ....+.++++||++
T Consensus 82 ~~~~~s~~~~~~~w~~~i~~~~--~~~piilvgnK~Dl~~~~~~~~~l~~~~~~~v~~~~~~~~a~~~~~~~~~e~SA~t 159 (175)
T cd01874 82 VVSPSSFENVKEKWVPEITHHC--PKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETGEKLARDLKAVKYVECSALT 159 (175)
T ss_pred CCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEECHhhhhChhhHHHhhhccCCCcCHHHHHHHHHHhCCcEEEEecCCC
Confidence 999999999975 655554332 4689999999999865422111111100 0001 11235799999999
Q ss_pred CCChHHHHHHHHHHh
Q 030429 159 SINIDAVIDWLIKHS 173 (177)
Q Consensus 159 ~~~i~~l~~~l~~~~ 173 (177)
|.|++++|+.++..+
T Consensus 160 g~~v~~~f~~~~~~~ 174 (175)
T cd01874 160 QKGLKNVFDEAILAA 174 (175)
T ss_pred CCCHHHHHHHHHHHh
Confidence 999999999998754
|
Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi |
| >PTZ00369 Ras-like protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-33 Score=190.53 Aligned_cols=160 Identities=21% Similarity=0.308 Sum_probs=128.3
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEE---EEeCCEEEEEEecCCchhhHHhHHHHhcCCCEEEEE
Q 030429 11 QEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRK---VTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYV 87 (177)
Q Consensus 11 ~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~---~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v 87 (177)
..+||+++|.+|||||||++++.++.+...+.+|.+..+.. ++...+.+++|||||++++...+..+++.+|++++|
T Consensus 4 ~~~Ki~iiG~~~~GKTsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~iilv 83 (189)
T PTZ00369 4 TEYKLVVVGGGGVGKSALTIQFIQNHFIDEYDPTIEDSYRKQCVIDEETCLLDILDTAGQEEYSAMRDQYMRTGQGFLCV 83 (189)
T ss_pred cceEEEEECCCCCCHHHHHHHHhcCCCCcCcCCchhhEEEEEEEECCEEEEEEEEeCCCCccchhhHHHHhhcCCEEEEE
Confidence 46899999999999999999999888877777777654432 334457788999999999999999999999999999
Q ss_pred EeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccc--CHHHHHHHhCcccccCCceeEEEeeecCCCChHHH
Q 030429 88 VDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEAL--SKQALVDQLGLESITDREVCCYMISCKDSINIDAV 165 (177)
Q Consensus 88 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l 165 (177)
+|++++++++....|+..+.......+.|+++|+||+|+.+.. ...+..+... ....+++++||++|.|++++
T Consensus 84 ~D~s~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~i~~~~~~~~~~-----~~~~~~~e~Sak~~~gi~~~ 158 (189)
T PTZ00369 84 YSITSRSSFEEIASFREQILRVKDKDRVPMILVGNKCDLDSERQVSTGEGQELAK-----SFGIPFLETSAKQRVNVDEA 158 (189)
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHH-----HhCCEEEEeeCCCCCCHHHH
Confidence 9999999999999998888765545678999999999986432 2222222111 11247999999999999999
Q ss_pred HHHHHHHhhh
Q 030429 166 IDWLIKHSKT 175 (177)
Q Consensus 166 ~~~l~~~~~~ 175 (177)
|++|.+.+.+
T Consensus 159 ~~~l~~~l~~ 168 (189)
T PTZ00369 159 FYELVREIRK 168 (189)
T ss_pred HHHHHHHHHH
Confidence 9999987654
|
|
| >cd00879 Sar1 Sar1 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.7e-32 Score=184.69 Aligned_cols=163 Identities=33% Similarity=0.576 Sum_probs=135.4
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEeCCEEEEEEecCCchhhHHhHHHHhcCCCEEEEEEe
Q 030429 10 KQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVD 89 (177)
Q Consensus 10 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d 89 (177)
.+..+|+++|++|||||||++++.++.+. .+.+|.+.....+..++..+.+||+||+..+...+..+++++|++++|+|
T Consensus 17 ~~~~ki~ilG~~~~GKStLi~~l~~~~~~-~~~~T~~~~~~~i~~~~~~~~l~D~~G~~~~~~~~~~~~~~ad~iilV~D 95 (190)
T cd00879 17 NKEAKILFLGLDNAGKTTLLHMLKDDRLA-QHVPTLHPTSEELTIGNIKFKTFDLGGHEQARRLWKDYFPEVDGIVFLVD 95 (190)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCCc-ccCCccCcceEEEEECCEEEEEEECCCCHHHHHHHHHHhccCCEEEEEEE
Confidence 45799999999999999999999977664 45667777777788888999999999999999888899999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccCHHHHHHHhCcccc-----------cCCceeEEEeeecC
Q 030429 90 AADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESI-----------TDREVCCYMISCKD 158 (177)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~Sa~~ 158 (177)
+++..++.....++..+.......+.|+++++||+|+......++..+.++.... ....+.+++|||++
T Consensus 96 ~~~~~s~~~~~~~~~~i~~~~~~~~~pvivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 175 (190)
T cd00879 96 AADPERFQESKEELDSLLSDEELANVPFLILGNKIDLPGAVSEEELRQALGLYGTTTGKGVSLKVSGIRPIEVFMCSVVK 175 (190)
T ss_pred CCcHHHHHHHHHHHHHHHcCccccCCCEEEEEeCCCCCCCcCHHHHHHHhCcccccccccccccccCceeEEEEEeEecC
Confidence 9999889888888888876655567999999999999765556666666653221 12346799999999
Q ss_pred CCChHHHHHHHHHHh
Q 030429 159 SINIDAVIDWLIKHS 173 (177)
Q Consensus 159 ~~~i~~l~~~l~~~~ 173 (177)
|.|++++|++|.+.+
T Consensus 176 ~~gv~e~~~~l~~~~ 190 (190)
T cd00879 176 RQGYGEAFRWLSQYL 190 (190)
T ss_pred CCChHHHHHHHHhhC
Confidence 999999999998753
|
Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation. |
| >cd04131 Rnd Rnd subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-32 Score=186.03 Aligned_cols=161 Identities=18% Similarity=0.225 Sum_probs=122.1
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEE-EE--EeCCEEEEEEecCCchhhHHhHHHHhcCCCEEEEEE
Q 030429 12 EMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMR-KV--TKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVV 88 (177)
Q Consensus 12 ~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~--~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~ 88 (177)
.+||+++|++|||||||++++.++.+...+.+|.+.... .+ ....+.+++|||+|++.+....+.+++++|++++||
T Consensus 1 ~~Kiv~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~~ilvf 80 (178)
T cd04131 1 RCKIVVVGDVQCGKTALLQVFAKDCYPETYVPTVFENYTASFEIDEQRIELSLWDTSGSPYYDNVRPLCYPDSDAVLICF 80 (178)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCcCCCCcCCceEEEEEEEEEECCEEEEEEEEECCCchhhhhcchhhcCCCCEEEEEE
Confidence 368999999999999999999999998888888764432 22 334578999999999999988889999999999999
Q ss_pred eCCCCCCHHHH-HHHHHHHHcCCCCCCCcEEEEeeCCCcccccC-HHH--------HHHHhCcccccCCce-eEEEeeec
Q 030429 89 DAADRDSVPIA-RSELHELLMKPSLSGIPLLVLGNKIDKSEALS-KQA--------LVDQLGLESITDREV-CCYMISCK 157 (177)
Q Consensus 89 d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~-~~~--------~~~~~~~~~~~~~~~-~~~~~Sa~ 157 (177)
|++++++|+.+ ..|+..+.... +..|+++|+||+|+.+... ..+ +....+.......++ ++++|||+
T Consensus 81 dit~~~Sf~~~~~~w~~~i~~~~--~~~~iilVgnK~DL~~~~~~~~~~~~~~~~~v~~~e~~~~a~~~~~~~~~E~SA~ 158 (178)
T cd04131 81 DISRPETLDSVLKKWRGEIQEFC--PNTKVLLVGCKTDLRTDLSTLMELSHQRQAPVSYEQGCAIAKQLGAEIYLECSAF 158 (178)
T ss_pred ECCChhhHHHHHHHHHHHHHHHC--CCCCEEEEEEChhhhcChhHHHHHHhcCCCCCCHHHHHHHHHHhCCCEEEECccC
Confidence 99999999996 67777775543 4789999999999854200 000 000000111112232 69999999
Q ss_pred CCCC-hHHHHHHHHHHhh
Q 030429 158 DSIN-IDAVIDWLIKHSK 174 (177)
Q Consensus 158 ~~~~-i~~l~~~l~~~~~ 174 (177)
+|.| ++++|+.+.+...
T Consensus 159 ~~~~~v~~~F~~~~~~~~ 176 (178)
T cd04131 159 TSEKSVRDIFHVATMACL 176 (178)
T ss_pred cCCcCHHHHHHHHHHHHh
Confidence 9995 9999999998644
|
The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. |
| >cd04108 Rab36_Rab34 Rab34/Rab36 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-32 Score=185.73 Aligned_cols=159 Identities=23% Similarity=0.362 Sum_probs=126.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEE--EEEe--CCEEEEEEecCCchhhHHhHHHHhcCCCEEEEEEe
Q 030429 14 ELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMR--KVTK--GNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVD 89 (177)
Q Consensus 14 ~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~--~~~~--~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d 89 (177)
||+++|.+|||||||+++++++.+...+.+|.+.... .+.. ..+.+++||+||++++...+..+++++|++++|+|
T Consensus 2 ki~ivG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d 81 (170)
T cd04108 2 KVIVVGDLSVGKTCLINRFCKDVFDKNYKATIGVDFEMERFEILGVPFSLQLWDTAGQERFKCIASTYYRGAQAIIIVFD 81 (170)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCChHHHHhhHHHHhcCCCEEEEEEE
Confidence 7999999999999999999999998888888875553 2333 34789999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccCH---HHHHHHhCcccccCCceeEEEeeecCCCChHHHH
Q 030429 90 AADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSK---QALVDQLGLESITDREVCCYMISCKDSINIDAVI 166 (177)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~ 166 (177)
++++.++.....|+..+.........|+++|+||+|+.+.... ++....+. .....+++++||++|.|++++|
T Consensus 82 ~~~~~s~~~~~~~~~~~~~~~~~~~~~iilVgnK~Dl~~~~~~~~~~~~~~~~~----~~~~~~~~e~Sa~~g~~v~~lf 157 (170)
T cd04108 82 LTDVASLEHTRQWLEDALKENDPSSVLLFLVGTKKDLSSPAQYALMEQDAIKLA----AEMQAEYWSVSALSGENVREFF 157 (170)
T ss_pred CcCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEChhcCccccccccHHHHHHHH----HHcCCeEEEEECCCCCCHHHHH
Confidence 9999999999999888766543345789999999998653221 11111111 1112468999999999999999
Q ss_pred HHHHHHhhhc
Q 030429 167 DWLIKHSKTA 176 (177)
Q Consensus 167 ~~l~~~~~~~ 176 (177)
+.|.+.+.+.
T Consensus 158 ~~l~~~~~~~ 167 (170)
T cd04108 158 FRVAALTFEL 167 (170)
T ss_pred HHHHHHHHHc
Confidence 9999987653
|
Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re |
| >cd04160 Arfrp1 Arfrp1 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-32 Score=181.28 Aligned_cols=158 Identities=34% Similarity=0.667 Sum_probs=129.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCC------CCCCCCccceeEEEEEeCCEEEEEEecCCchhhHHhHHHHhcCCCEEEEE
Q 030429 14 ELSLIGLQNAGKTSLVNTIATGGY------SEDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYV 87 (177)
Q Consensus 14 ~i~i~G~~~~GKSsli~~l~~~~~------~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v 87 (177)
+|+++|++|||||||++++.+... ...+.+|.+.....+..++..+.+||+||+..+...+..++..+|++++|
T Consensus 1 ~i~~vG~~~~GKstLi~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~v~v 80 (167)
T cd04160 1 SVLILGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLNIGTIEVGNARLKFWDLGGQESLRSLWDKYYAECHAIIYV 80 (167)
T ss_pred CEEEEecCCCCHHHHHHHHhhhcccccCCcccccCCccccceEEEEECCEEEEEEECCCChhhHHHHHHHhCCCCEEEEE
Confidence 589999999999999999975322 23445677777777788899999999999999999999999999999999
Q ss_pred EeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccCHHHHHHHhCccc--ccCCceeEEEeeecCCCChHHH
Q 030429 88 VDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLES--ITDREVCCYMISCKDSINIDAV 165 (177)
Q Consensus 88 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~Sa~~~~~i~~l 165 (177)
+|+++++++.....++..+.......+.|+++++||+|+.+.....+..+.+.... ......+++++||++|.|++++
T Consensus 81 vd~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~e~ 160 (167)
T cd04160 81 IDSTDRERFEESKSALEKVLRNEALEGVPLLILANKQDLPDALSVEEIKEVFQDKAEEIGRRDCLVLPVSALEGTGVREG 160 (167)
T ss_pred EECchHHHHHHHHHHHHHHHhChhhcCCCEEEEEEccccccCCCHHHHHHHhccccccccCCceEEEEeeCCCCcCHHHH
Confidence 99999888888888888887765556799999999999977655555555544322 2234568999999999999999
Q ss_pred HHHHHH
Q 030429 166 IDWLIK 171 (177)
Q Consensus 166 ~~~l~~ 171 (177)
+++|.+
T Consensus 161 ~~~l~~ 166 (167)
T cd04160 161 IEWLVE 166 (167)
T ss_pred HHHHhc
Confidence 999975
|
Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development. |
| >PLN03071 GTP-binding nuclear protein Ran; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-32 Score=190.26 Aligned_cols=159 Identities=22% Similarity=0.371 Sum_probs=130.5
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEE----eCCEEEEEEecCCchhhHHhHHHHhcCCCEEE
Q 030429 10 KQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVT----KGNVTIKLWDLGGQRRFRTMWERYCRGVSAIL 85 (177)
Q Consensus 10 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~----~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i 85 (177)
...+||+++|.+|||||||+++++.+.+...+.+|.+....... ...+.+.+|||+|++++...+..+++++|+++
T Consensus 11 ~~~~Ki~vvG~~gvGKTsli~~~~~~~f~~~~~~tig~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i 90 (219)
T PLN03071 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (219)
T ss_pred CCceEEEEECcCCCCHHHHHHHHhhCCCCCccCCccceeEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHcccccEEE
Confidence 66799999999999999999999999998888888886665433 24589999999999999998899999999999
Q ss_pred EEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccCHHHHHHHhCcccccCCceeEEEeeecCCCChHHH
Q 030429 86 YVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCKDSINIDAV 165 (177)
Q Consensus 86 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l 165 (177)
+|||+++++++..+..|+..+.... .+.|+++|+||+|+.+.....+.. .+ ....++.+++|||++|.|++++
T Consensus 91 lvfD~~~~~s~~~i~~w~~~i~~~~--~~~piilvgNK~Dl~~~~v~~~~~-~~----~~~~~~~~~e~SAk~~~~i~~~ 163 (219)
T PLN03071 91 IMFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNRQVKAKQV-TF----HRKKNLQYYEISAKSNYNFEKP 163 (219)
T ss_pred EEEeCCCHHHHHHHHHHHHHHHHhC--CCCcEEEEEEchhhhhccCCHHHH-HH----HHhcCCEEEEcCCCCCCCHHHH
Confidence 9999999999999999988886543 478999999999986432211111 11 1123457999999999999999
Q ss_pred HHHHHHHhhh
Q 030429 166 IDWLIKHSKT 175 (177)
Q Consensus 166 ~~~l~~~~~~ 175 (177)
|++|.+.+.+
T Consensus 164 f~~l~~~~~~ 173 (219)
T PLN03071 164 FLYLARKLAG 173 (219)
T ss_pred HHHHHHHHHc
Confidence 9999988753
|
|
| >cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-32 Score=189.62 Aligned_cols=168 Identities=20% Similarity=0.248 Sum_probs=126.7
Q ss_pred cccccceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEE-E--EeCCEEEEEEecCCchhhHHhHHHHhcCCC
Q 030429 6 SLFFKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRK-V--TKGNVTIKLWDLGGQRRFRTMWERYCRGVS 82 (177)
Q Consensus 6 ~~~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~-~--~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d 82 (177)
+...-..+||+++|++|||||||+++|.++.+...+.+|.+..... + ....+.+.+|||+|+++|......+++++|
T Consensus 7 ~~~~~~~~KIvvvGd~~VGKTsLi~r~~~~~F~~~y~pTi~~~~~~~i~~~~~~v~l~iwDTaG~e~~~~~~~~~~~~ad 86 (232)
T cd04174 7 PQPLVMRCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTAGLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSD 86 (232)
T ss_pred CcCceeeEEEEEECCCCCcHHHHHHHHhcCCCCCCcCCceeeeeEEEEEECCEEEEEEEEeCCCchhhHHHHHHHcCCCc
Confidence 3334467899999999999999999999999988888887654432 2 234588999999999999999999999999
Q ss_pred EEEEEEeCCCCCCHHHH-HHHHHHHHcCCCCCCCcEEEEeeCCCcccccCH---------HHHHHHhCcccccCCce-eE
Q 030429 83 AILYVVDAADRDSVPIA-RSELHELLMKPSLSGIPLLVLGNKIDKSEALSK---------QALVDQLGLESITDREV-CC 151 (177)
Q Consensus 83 ~~i~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~---------~~~~~~~~~~~~~~~~~-~~ 151 (177)
++++|||++++.+|+.. ..|+..+.... +..|+++|+||+|+.+.... ..+....+.......++ .|
T Consensus 87 ~vIlVyDit~~~Sf~~~~~~w~~~i~~~~--~~~piilVgNK~DL~~~~~~~~~l~~~~~~~Vs~~e~~~~a~~~~~~~~ 164 (232)
T cd04174 87 AVLLCFDISRPETVDSALKKWKAEIMDYC--PSTRILLIGCKTDLRTDLSTLMELSNQKQAPISYEQGCALAKQLGAEVY 164 (232)
T ss_pred EEEEEEECCChHHHHHHHHHHHHHHHHhC--CCCCEEEEEECcccccccchhhhhccccCCcCCHHHHHHHHHHcCCCEE
Confidence 99999999999999985 77777775543 46899999999998542100 00000001111112233 58
Q ss_pred EEeeecCCC-ChHHHHHHHHHHhhh
Q 030429 152 YMISCKDSI-NIDAVIDWLIKHSKT 175 (177)
Q Consensus 152 ~~~Sa~~~~-~i~~l~~~l~~~~~~ 175 (177)
++|||++|. |++++|+.++..+.+
T Consensus 165 ~EtSAktg~~~V~e~F~~~~~~~~~ 189 (232)
T cd04174 165 LECSAFTSEKSIHSIFRSASLLCLN 189 (232)
T ss_pred EEccCCcCCcCHHHHHHHHHHHHHH
Confidence 999999998 899999999887654
|
Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. |
| >cd01865 Rab3 Rab3 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-31 Score=180.53 Aligned_cols=157 Identities=22% Similarity=0.403 Sum_probs=125.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEE--EEEe--CCEEEEEEecCCchhhHHhHHHHhcCCCEEEEEE
Q 030429 13 MELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMR--KVTK--GNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVV 88 (177)
Q Consensus 13 ~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~--~~~~--~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~ 88 (177)
+||+++|++|||||||++++.++.+...+.++.+.... .+.. ..+.+.+||+||++++...+..+++++|++++|+
T Consensus 2 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~g~~~~~~~~~~~~~~~~~~l~v~ 81 (165)
T cd01865 2 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRNDKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMY 81 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHccCCcEEEEEE
Confidence 69999999999999999999999888777777765443 2322 3478999999999999999999999999999999
Q ss_pred eCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccC--HHHHHHHhCcccccCCceeEEEeeecCCCChHHHH
Q 030429 89 DAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALS--KQALVDQLGLESITDREVCCYMISCKDSINIDAVI 166 (177)
Q Consensus 89 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~ 166 (177)
|++++++++.+..|+..+.... ....|+++|+||+|+.+... .++..+... ..+++++++||++|.|++++|
T Consensus 82 d~~~~~s~~~~~~~~~~i~~~~-~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~gv~~l~ 155 (165)
T cd01865 82 DITNEESFNAVQDWSTQIKTYS-WDNAQVILVGNKCDMEDERVVSSERGRQLAD-----QLGFEFFEASAKENINVKQVF 155 (165)
T ss_pred ECCCHHHHHHHHHHHHHHHHhC-CCCCCEEEEEECcccCcccccCHHHHHHHHH-----HcCCEEEEEECCCCCCHHHHH
Confidence 9999999999999988875432 24689999999999965432 122211111 112369999999999999999
Q ss_pred HHHHHHhhh
Q 030429 167 DWLIKHSKT 175 (177)
Q Consensus 167 ~~l~~~~~~ 175 (177)
+++.+.+..
T Consensus 156 ~~l~~~~~~ 164 (165)
T cd01865 156 ERLVDIICD 164 (165)
T ss_pred HHHHHHHHh
Confidence 999987654
|
The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot |
| >cd04119 RJL RJL (RabJ-Like) subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-32 Score=181.85 Aligned_cols=157 Identities=20% Similarity=0.334 Sum_probs=126.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEE--EEE--eCCEEEEEEecCCchhhHHhHHHHhcCCCEEEEEE
Q 030429 13 MELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMR--KVT--KGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVV 88 (177)
Q Consensus 13 ~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~--~~~--~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~ 88 (177)
+||+++|++|||||||+++++++.+...+.++.+.... .+. ...+.+++|||||++.+...+..+++++|++++|+
T Consensus 1 ~ki~~vG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~ 80 (168)
T cd04119 1 IKVISMGNSGVGKSCIIKRYCEGRFVSKYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHPEYLEVRNEFYKDTQGVLLVY 80 (168)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCeEEEEEEEECCccHHHHHHHHHHhccCCEEEEEE
Confidence 58999999999999999999999888888888775543 233 34578999999999999988889999999999999
Q ss_pred eCCCCCCHHHHHHHHHHHHcCCCC----CCCcEEEEeeCCCccccc--CHHHHHHHhCcccccCCceeEEEeeecCCCCh
Q 030429 89 DAADRDSVPIARSELHELLMKPSL----SGIPLLVLGNKIDKSEAL--SKQALVDQLGLESITDREVCCYMISCKDSINI 162 (177)
Q Consensus 89 d~~~~~~~~~~~~~~~~~~~~~~~----~~~~~iiv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i 162 (177)
|++++++++....|+..+...... .+.|+++|+||+|+.+.. ..++..+... ....+++++||++|.|+
T Consensus 81 D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~gi 155 (168)
T cd04119 81 DVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKIDLTKHRAVSEDEGRLWAE-----SKGFKYFETSACTGEGV 155 (168)
T ss_pred ECCCHHHHHhHHHHHHHHHHhccccccCCCceEEEEEEchhcccccccCHHHHHHHHH-----HcCCeEEEEECCCCCCH
Confidence 999999999999998888665432 568999999999997422 2222222111 12247999999999999
Q ss_pred HHHHHHHHHHhh
Q 030429 163 DAVIDWLIKHSK 174 (177)
Q Consensus 163 ~~l~~~l~~~~~ 174 (177)
+++|++|.+.+.
T Consensus 156 ~~l~~~l~~~l~ 167 (168)
T cd04119 156 NEMFQTLFSSIV 167 (168)
T ss_pred HHHHHHHHHHHh
Confidence 999999998764
|
RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. |
| >cd04159 Arl10_like Arl10-like subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-31 Score=177.54 Aligned_cols=157 Identities=71% Similarity=1.180 Sum_probs=135.6
Q ss_pred EEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEeCCEEEEEEecCCchhhHHhHHHHhcCCCEEEEEEeCCCCC
Q 030429 15 LSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAADRD 94 (177)
Q Consensus 15 i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~ 94 (177)
|+++|++|||||||++++.+..+...+.++.+.....+..+++.+.+||+||+..+...+..++..+|++++|+|+++++
T Consensus 2 i~i~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~ 81 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAGGQFSEDTIPTVGFNMRKVTKGNVTLKVWDLGGQPRFRSMWERYCRGVNAIVYVVDAADRT 81 (159)
T ss_pred EEEEcCCCCCHHHHHHHHccCCCCcCccCCCCcceEEEEECCEEEEEEECCCCHhHHHHHHHHHhcCCEEEEEEECCCHH
Confidence 79999999999999999999988888888888888888788899999999999999999999999999999999999988
Q ss_pred CHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccCHHHHHHHhCcccccCCceeEEEeeecCCCChHHHHHHHHH
Q 030429 95 SVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCKDSINIDAVIDWLIK 171 (177)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~ 171 (177)
++.....++..+.......+.|+++|+||+|+.+....++..+.+..........+++++|+++|.|+++++++|.+
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~ 158 (159)
T cd04159 82 ALEAAKNELHDLLEKPSLEGIPLLVLGNKNDLPGALSVDELIEQMNLKSITDREVSCYSISCKEKTNIDIVLDWLIK 158 (159)
T ss_pred HHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCCcCHHHHHHHhCcccccCCceEEEEEEeccCCChHHHHHHHhh
Confidence 88888888888876554567899999999999776555556666554444445678999999999999999999975
|
Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved. |
| >cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-32 Score=181.57 Aligned_cols=156 Identities=18% Similarity=0.278 Sum_probs=124.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEE-EEEeC--CEEEEEEecCCchhhHHhHHHHhcCCCEEEEEEe
Q 030429 13 MELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMR-KVTKG--NVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVD 89 (177)
Q Consensus 13 ~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d 89 (177)
+||+++|++|||||||+++++++.+...+.+|.+.... ....+ .+.+.+||+||++++..++..+++.+|++++|+|
T Consensus 2 ~ki~iiG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~~~~~i~v~~ 81 (162)
T cd04138 2 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFA 81 (162)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCcCCcCCcchheEEEEEEECCEEEEEEEEECCCCcchHHHHHHHHhcCCEEEEEEE
Confidence 68999999999999999999988887777776654332 23333 3668899999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccC-HHHHHHHhCcccccCCceeEEEeeecCCCChHHHHHH
Q 030429 90 AADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALS-KQALVDQLGLESITDREVCCYMISCKDSINIDAVIDW 168 (177)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~ 168 (177)
++++.++.+...|+..+.......+.|+++|+||+|+.+... ..+..+... ....+++++||++|.|++++|++
T Consensus 82 ~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~gi~~l~~~ 156 (162)
T cd04138 82 INSRKSFEDIHTYREQIKRVKDSDDVPMVLVGNKCDLAARTVSSRQGQDLAK-----SYGIPYIETSAKTRQGVEEAFYT 156 (162)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccceecHHHHHHHHH-----HhCCeEEEecCCCCCCHHHHHHH
Confidence 999999999988888887655446789999999999876322 222222211 11347999999999999999999
Q ss_pred HHHHh
Q 030429 169 LIKHS 173 (177)
Q Consensus 169 l~~~~ 173 (177)
+.+.+
T Consensus 157 l~~~~ 161 (162)
T cd04138 157 LVREI 161 (162)
T ss_pred HHHHh
Confidence 98765
|
H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1. |
| >cd04156 ARLTS1 ARLTS1 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-31 Score=179.46 Aligned_cols=157 Identities=28% Similarity=0.558 Sum_probs=127.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEe-CCEEEEEEecCCchhhHHhHHHHhcCCCEEEEEEeCCC
Q 030429 14 ELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTK-GNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAAD 92 (177)
Q Consensus 14 ~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~-~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~ 92 (177)
+|+++|++|||||||++++.++.+.. ..+|.+.....+.. ..+.+.+||+||+..+...+..++..+|++++|+|+++
T Consensus 1 ~i~i~G~~~~GKTsl~~~~~~~~~~~-~~~t~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~iv~v~D~~~ 79 (160)
T cd04156 1 QVLLLGLDSAGKSTLLYKLKHAELVT-TIPTVGFNVEMLQLEKHLSLTVWDVGGQEKMRTVWKCYLENTDGLVYVVDSSD 79 (160)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCccc-ccCccCcceEEEEeCCceEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCc
Confidence 58999999999999999999887754 35666666555543 45899999999999999888889999999999999999
Q ss_pred CCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccCHHHHHHHhCccccc-CCceeEEEeeecCCCChHHHHHHHHH
Q 030429 93 RDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESIT-DREVCCYMISCKDSINIDAVIDWLIK 171 (177)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~~i~~l~~~l~~ 171 (177)
+.++.....++..+.......+.|+++|+||+|+......+++...++..... ...+++++|||++|.|++++|++|.+
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~~i~~ 159 (160)
T cd04156 80 EARLDESQKELKHILKNEHIKGVPVVLLANKQDLPGALTAEEITRRFKLKKYCSDRDWYVQPCSAVTGEGLAEAFRKLAS 159 (160)
T ss_pred HHHHHHHHHHHHHHHhchhhcCCCEEEEEECcccccCcCHHHHHHHcCCcccCCCCcEEEEecccccCCChHHHHHHHhc
Confidence 98899988888888765444579999999999997655555666555432222 24567999999999999999999864
|
ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h |
| >cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-32 Score=181.24 Aligned_cols=159 Identities=26% Similarity=0.411 Sum_probs=128.5
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEE--EEEeC--CEEEEEEecCCchhhHHhHHHHhcCCCEEEE
Q 030429 11 QEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMR--KVTKG--NVTIKLWDLGGQRRFRTMWERYCRGVSAILY 86 (177)
Q Consensus 11 ~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~--~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~ 86 (177)
..+||+++|++|+|||||++++.++.+...+.++.+.... .+..+ .+.+++||+||++++......+++++|++++
T Consensus 2 ~~~ki~vvG~~~~GKSsl~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~ad~~i~ 81 (167)
T cd01867 2 YLFKLLLIGDSGVGKSCLLLRFSEDSFNPSFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGIIL 81 (167)
T ss_pred cceEEEEECCCCCCHHHHHHHHhhCcCCcccccCccceEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhCCCCEEEE
Confidence 4589999999999999999999999888888888775443 33333 4689999999999999988899999999999
Q ss_pred EEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccc--CHHHHHHHhCcccccCCceeEEEeeecCCCChHH
Q 030429 87 VVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEAL--SKQALVDQLGLESITDREVCCYMISCKDSINIDA 164 (177)
Q Consensus 87 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 164 (177)
|+|+++++++..+..|+..+... ...+.|+++|+||+|+.+.. ..++..+... ....+++++||++|.|+++
T Consensus 82 v~d~~~~~s~~~~~~~~~~i~~~-~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~v~~ 155 (167)
T cd01867 82 VYDITDEKSFENIRNWMRNIEEH-ASEDVERMLVGNKCDMEEKRVVSKEEGEALAD-----EYGIKFLETSAKANINVEE 155 (167)
T ss_pred EEECcCHHHHHhHHHHHHHHHHh-CCCCCcEEEEEECcccccccCCCHHHHHHHHH-----HcCCEEEEEeCCCCCCHHH
Confidence 99999999999999988887654 23568999999999997532 2222222221 1224799999999999999
Q ss_pred HHHHHHHHhhh
Q 030429 165 VIDWLIKHSKT 175 (177)
Q Consensus 165 l~~~l~~~~~~ 175 (177)
+|+++.+.+.+
T Consensus 156 ~~~~i~~~~~~ 166 (167)
T cd01867 156 AFFTLAKDIKK 166 (167)
T ss_pred HHHHHHHHHHh
Confidence 99999998765
|
Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi |
| >cd04117 Rab15 Rab15 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-32 Score=181.94 Aligned_cols=155 Identities=23% Similarity=0.374 Sum_probs=123.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEE--EEEeC--CEEEEEEecCCchhhHHhHHHHhcCCCEEEEEE
Q 030429 13 MELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMR--KVTKG--NVTIKLWDLGGQRRFRTMWERYCRGVSAILYVV 88 (177)
Q Consensus 13 ~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~--~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~ 88 (177)
+||+++|++|||||||++++.++.+...+.+|.+.... .+..+ .+.+.+||++|++++...+..+++.+|++++||
T Consensus 1 ~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~i~v~ 80 (161)
T cd04117 1 FRLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQERYQTITKQYYRRAQGIFLVY 80 (161)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCCcHhHHhhHHHHhcCCcEEEEEE
Confidence 48999999999999999999999998888888776543 34444 367899999999999999999999999999999
Q ss_pred eCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccCH-HHHHHHhCcccccCCceeEEEeeecCCCChHHHHH
Q 030429 89 DAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSK-QALVDQLGLESITDREVCCYMISCKDSINIDAVID 167 (177)
Q Consensus 89 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~ 167 (177)
|++++++++.+..|+..+.... ..+.|+++|+||+|+.+.... .+....+.. ....+++++||++|.|++++|+
T Consensus 81 d~~~~~sf~~~~~~~~~~~~~~-~~~~~iilvgnK~Dl~~~~~v~~~~~~~~~~----~~~~~~~e~Sa~~~~~v~~~f~ 155 (161)
T cd04117 81 DISSERSYQHIMKWVSDVDEYA-PEGVQKILIGNKADEEQKRQVGDEQGNKLAK----EYGMDFFETSACTNSNIKESFT 155 (161)
T ss_pred ECCCHHHHHHHHHHHHHHHHhC-CCCCeEEEEEECcccccccCCCHHHHHHHHH----HcCCEEEEEeCCCCCCHHHHHH
Confidence 9999999999999988775542 346899999999998654321 111111111 1124799999999999999999
Q ss_pred HHHHH
Q 030429 168 WLIKH 172 (177)
Q Consensus 168 ~l~~~ 172 (177)
+|.+.
T Consensus 156 ~l~~~ 160 (161)
T cd04117 156 RLTEL 160 (161)
T ss_pred HHHhh
Confidence 99875
|
Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to |
| >cd04109 Rab28 Rab28 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-32 Score=189.74 Aligned_cols=159 Identities=21% Similarity=0.313 Sum_probs=126.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEE--EEe---CCEEEEEEecCCchhhHHhHHHHhcCCCEEEEE
Q 030429 13 MELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRK--VTK---GNVTIKLWDLGGQRRFRTMWERYCRGVSAILYV 87 (177)
Q Consensus 13 ~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~--~~~---~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v 87 (177)
+||+++|++|||||||+++|.++.+...+.+|.+..... +.. ..+.+++||+||++.+...+..+++++|++++|
T Consensus 1 ~Ki~ivG~~~vGKSsLi~~l~~~~~~~~~~~T~~~d~~~~~i~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~ad~iilV 80 (215)
T cd04109 1 FKIVVLGDGAVGKTSLCRRFAKEGFGKSYKQTIGLDFFSKRVTLPGNLNVTLQVWDIGGQSIGGKMLDKYIYGAHAVFLV 80 (215)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCcHHHHHHHHHHhhcCCEEEEE
Confidence 589999999999999999999998888888888765433 333 258899999999999999999999999999999
Q ss_pred EeCCCCCCHHHHHHHHHHHHcCCC--CCCCcEEEEeeCCCcccccCH-HHHHHHhCcccccCCceeEEEeeecCCCChHH
Q 030429 88 VDAADRDSVPIARSELHELLMKPS--LSGIPLLVLGNKIDKSEALSK-QALVDQLGLESITDREVCCYMISCKDSINIDA 164 (177)
Q Consensus 88 ~d~~~~~~~~~~~~~~~~~~~~~~--~~~~~~iiv~nK~D~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 164 (177)
+|++++++++.+..|+..+..... ....|+++|+||+|+.+.... .+..+.+.. ...++++++||++|.|+++
T Consensus 81 ~D~t~~~s~~~~~~w~~~l~~~~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~~~----~~~~~~~~iSAktg~gv~~ 156 (215)
T cd04109 81 YDVTNSQSFENLEDWYSMVRKVLKSSETQPLVVLVGNKTDLEHNRTVKDDKHARFAQ----ANGMESCLVSAKTGDRVNL 156 (215)
T ss_pred EECCCHHHHHHHHHHHHHHHHhccccCCCceEEEEEECcccccccccCHHHHHHHHH----HcCCEEEEEECCCCCCHHH
Confidence 999999999999988888766532 234689999999999643211 111111111 1124689999999999999
Q ss_pred HHHHHHHHhhh
Q 030429 165 VIDWLIKHSKT 175 (177)
Q Consensus 165 l~~~l~~~~~~ 175 (177)
+|++|.+.+.+
T Consensus 157 lf~~l~~~l~~ 167 (215)
T cd04109 157 LFQQLAAELLG 167 (215)
T ss_pred HHHHHHHHHHh
Confidence 99999998754
|
First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs |
| >cd04144 Ras2 Ras2 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-32 Score=188.99 Aligned_cols=158 Identities=17% Similarity=0.270 Sum_probs=123.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEE-EEEeC--CEEEEEEecCCchhhHHhHHHHhcCCCEEEEEEeC
Q 030429 14 ELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMR-KVTKG--NVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDA 90 (177)
Q Consensus 14 ~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~ 90 (177)
||+++|.+|||||||+++|+++.+...+.+|.+.... ....+ .+.+++|||||++++...+..+++.+|++++|||+
T Consensus 1 ki~ivG~~~vGKTsli~~l~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d~ 80 (190)
T cd04144 1 KLVVLGDGGVGKTALTIQLCLNHFVETYDPTIEDSYRKQVVVDGQPCMLEVLDTAGQEEYTALRDQWIREGEGFILVYSI 80 (190)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCccCCCchHhhEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHHhCCEEEEEEEC
Confidence 5899999999999999999988887777777664332 22333 36689999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHcCCC--CCCCcEEEEeeCCCcccccC--HHHHHHHhCcccccCCceeEEEeeecCCCChHHHH
Q 030429 91 ADRDSVPIARSELHELLMKPS--LSGIPLLVLGNKIDKSEALS--KQALVDQLGLESITDREVCCYMISCKDSINIDAVI 166 (177)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~iiv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~ 166 (177)
+++.+++.+..|+..+..... ..+.|+++|+||+|+.+... ..+..+.. ...+++++++||++|.|++++|
T Consensus 81 ~~~~s~~~~~~~~~~i~~~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~-----~~~~~~~~e~SAk~~~~v~~l~ 155 (190)
T cd04144 81 TSRSTFERVERFREQIQRVKDESAADVPIMIVGNKCDKVYEREVSTEEGAALA-----RRLGCEFIEASAKTNVNVERAF 155 (190)
T ss_pred CCHHHHHHHHHHHHHHHHHhcccCCCCCEEEEEEChhccccCccCHHHHHHHH-----HHhCCEEEEecCCCCCCHHHHH
Confidence 999999999998887755422 25689999999999865322 12211111 1122479999999999999999
Q ss_pred HHHHHHhhhc
Q 030429 167 DWLIKHSKTA 176 (177)
Q Consensus 167 ~~l~~~~~~~ 176 (177)
+++.+.+.++
T Consensus 156 ~~l~~~l~~~ 165 (190)
T cd04144 156 YTLVRALRQQ 165 (190)
T ss_pred HHHHHHHHHh
Confidence 9999887653
|
The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. |
| >smart00173 RAS Ras subfamily of RAS small GTPases | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-32 Score=183.02 Aligned_cols=158 Identities=22% Similarity=0.332 Sum_probs=124.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEE-EEE--eCCEEEEEEecCCchhhHHhHHHHhcCCCEEEEEEe
Q 030429 13 MELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMR-KVT--KGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVD 89 (177)
Q Consensus 13 ~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~--~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d 89 (177)
+||+++|++|||||||++++.++.+...+.++...... ... ...+.+.+||+||++++...+..+++.+|++++|+|
T Consensus 1 ~ki~v~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d 80 (164)
T smart00173 1 YKLVVLGSGGVGKSALTIQFVQGHFVDDYDPTIEDSYRKQIEIDGEVCLLDILDTAGQEEFSAMRDQYMRTGEGFLLVYS 80 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCCcccCCchhhhEEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhCCEEEEEEE
Confidence 48999999999999999999988877766666552222 222 334788999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccc--CHHHHHHHhCcccccCCceeEEEeeecCCCChHHHHH
Q 030429 90 AADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEAL--SKQALVDQLGLESITDREVCCYMISCKDSINIDAVID 167 (177)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~ 167 (177)
++++++++.+..|+..+.......+.|+++|+||+|+.+.. ..++..+.... ...+++++||++|.|++++|+
T Consensus 81 ~~~~~s~~~~~~~~~~i~~~~~~~~~pii~v~nK~Dl~~~~~~~~~~~~~~~~~-----~~~~~~~~Sa~~~~~i~~l~~ 155 (164)
T smart00173 81 ITDRQSFEEIKKFREQILRVKDRDDVPIVLVGNKCDLESERVVSTEEGKELARQ-----WGCPFLETSAKERVNVDEAFY 155 (164)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceEcHHHHHHHHHH-----cCCEEEEeecCCCCCHHHHHH
Confidence 99999999999988887665554578999999999986532 22222222111 124799999999999999999
Q ss_pred HHHHHhhh
Q 030429 168 WLIKHSKT 175 (177)
Q Consensus 168 ~l~~~~~~ 175 (177)
+|.+.+.+
T Consensus 156 ~l~~~~~~ 163 (164)
T smart00173 156 DLVREIRK 163 (164)
T ss_pred HHHHHHhh
Confidence 99987754
|
Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades |
| >cd04124 RabL2 RabL2 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-31 Score=179.72 Aligned_cols=157 Identities=25% Similarity=0.391 Sum_probs=124.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEE----EEeCCEEEEEEecCCchhhHHhHHHHhcCCCEEEEEE
Q 030429 13 MELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRK----VTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVV 88 (177)
Q Consensus 13 ~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~----~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~ 88 (177)
+||+++|.+|||||||++++.++.+.....++.+..... +....+.+++|||||++++...+..+++++|++++|+
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 80 (161)
T cd04124 1 VKIILLGDSAVGKSKLVERFLMDGYEPQQLSTYALTLYKHNAKFEGKTILVDFWDTAGQERFQTMHASYYHKAHACILVF 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhCCCCEEEEEE
Confidence 589999999999999999999888877766666544332 2234578999999999999999999999999999999
Q ss_pred eCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccCHHHHHHHhCcccccCCceeEEEeeecCCCChHHHHHH
Q 030429 89 DAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCKDSINIDAVIDW 168 (177)
Q Consensus 89 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~ 168 (177)
|++++.++.....|+..+.... .+.|+++|+||+|+.+.. ..+.. .+. ....++++++||++|.|++++|+.
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~--~~~p~ivv~nK~Dl~~~~-~~~~~-~~~----~~~~~~~~~~Sa~~~~gv~~l~~~ 152 (161)
T cd04124 81 DVTRKITYKNLSKWYEELREYR--PEIPCIVVANKIDLDPSV-TQKKF-NFA----EKHNLPLYYVSAADGTNVVKLFQD 152 (161)
T ss_pred ECCCHHHHHHHHHHHHHHHHhC--CCCcEEEEEECccCchhH-HHHHH-HHH----HHcCCeEEEEeCCCCCCHHHHHHH
Confidence 9999999999988888875432 468999999999985421 11111 111 112357999999999999999999
Q ss_pred HHHHhhhcC
Q 030429 169 LIKHSKTAK 177 (177)
Q Consensus 169 l~~~~~~~~ 177 (177)
+.+.+.++|
T Consensus 153 l~~~~~~~~ 161 (161)
T cd04124 153 AIKLAVSYK 161 (161)
T ss_pred HHHHHHhcC
Confidence 999887765
|
RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b |
| >cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-32 Score=182.91 Aligned_cols=157 Identities=21% Similarity=0.291 Sum_probs=124.2
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEE-EEEe--CCEEEEEEecCCchhhHHhHHHHhcCCCEEEEEE
Q 030429 12 EMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMR-KVTK--GNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVV 88 (177)
Q Consensus 12 ~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~--~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~ 88 (177)
.+||+++|++|+|||||++++.++.+.....++...... .... ..+.+++|||||+.++...+..+++++|++++|+
T Consensus 2 ~~ki~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~ 81 (164)
T cd04145 2 TYKLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDSYTKQCEIDGQWAILDILDTAGQEEFSAMREQYMRTGEGFLLVF 81 (164)
T ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCcccCCCccceEEEEEEECCEEEEEEEEECCCCcchhHHHHHHHhhCCEEEEEE
Confidence 479999999999999999999988777666666553322 2223 3467899999999999999999999999999999
Q ss_pred eCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccC--HHHHHHHhCcccccCCceeEEEeeecCCCChHHHH
Q 030429 89 DAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALS--KQALVDQLGLESITDREVCCYMISCKDSINIDAVI 166 (177)
Q Consensus 89 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~ 166 (177)
|++++.+++....|+..+.......+.|+++|+||+|+..... .++..+... ..+++++++||++|.|++++|
T Consensus 82 d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~i~~l~ 156 (164)
T cd04145 82 SVTDRGSFEEVDKFHTQILRVKDRDEFPMILVGNKADLEHQRKVSREEGQELAR-----KLKIPYIETSAKDRLNVDKAF 156 (164)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEeeCccccccceecHHHHHHHHH-----HcCCcEEEeeCCCCCCHHHHH
Confidence 9999999999999988887654446789999999999865422 122222111 123479999999999999999
Q ss_pred HHHHHHh
Q 030429 167 DWLIKHS 173 (177)
Q Consensus 167 ~~l~~~~ 173 (177)
++|.+.+
T Consensus 157 ~~l~~~~ 163 (164)
T cd04145 157 HDLVRVI 163 (164)
T ss_pred HHHHHhh
Confidence 9998765
|
This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali |
| >cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-32 Score=182.55 Aligned_cols=158 Identities=25% Similarity=0.420 Sum_probs=126.0
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEE--EEEeC--CEEEEEEecCCchhhHHhHHHHhcCCCEEEEE
Q 030429 12 EMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMR--KVTKG--NVTIKLWDLGGQRRFRTMWERYCRGVSAILYV 87 (177)
Q Consensus 12 ~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~--~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v 87 (177)
.+||+++|++|||||||++++.++.+...+.++.+.... .+..+ .+.+++||+||++++...+..+++.+|++++|
T Consensus 2 ~~ki~i~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v 81 (166)
T cd01869 2 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIV 81 (166)
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhCcCCEEEEE
Confidence 479999999999999999999988887777777664443 33333 46889999999999999999999999999999
Q ss_pred EeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccC--HHHHHHHhCcccccCCceeEEEeeecCCCChHHH
Q 030429 88 VDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALS--KQALVDQLGLESITDREVCCYMISCKDSINIDAV 165 (177)
Q Consensus 88 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l 165 (177)
+|+++++++..+..|+..+.... ..+.|+++|+||+|+.+... .++..+... ...++++++||++|.|++++
T Consensus 82 ~d~~~~~s~~~l~~~~~~~~~~~-~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~v~~~ 155 (166)
T cd01869 82 YDVTDQESFNNVKQWLQEIDRYA-SENVNKLLVGNKCDLTDKRVVDYSEAQEFAD-----ELGIPFLETSAKNATNVEQA 155 (166)
T ss_pred EECcCHHHHHhHHHHHHHHHHhC-CCCCcEEEEEEChhcccccCCCHHHHHHHHH-----HcCCeEEEEECCCCcCHHHH
Confidence 99999999999999888875542 34689999999999865422 222222111 12347999999999999999
Q ss_pred HHHHHHHhhh
Q 030429 166 IDWLIKHSKT 175 (177)
Q Consensus 166 ~~~l~~~~~~ 175 (177)
|+.|.+.+.+
T Consensus 156 ~~~i~~~~~~ 165 (166)
T cd01869 156 FMTMAREIKK 165 (166)
T ss_pred HHHHHHHHHh
Confidence 9999998764
|
Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t |
| >cd04140 ARHI_like ARHI subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-32 Score=183.60 Aligned_cols=157 Identities=21% Similarity=0.296 Sum_probs=121.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEE---EEeCCEEEEEEecCCchhhHHhHHHHhcCCCEEEEEEe
Q 030429 13 MELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRK---VTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVD 89 (177)
Q Consensus 13 ~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~---~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d 89 (177)
+||+++|++|||||||+++++++.+...+.++.+..... .....+.+.+||+||++++......+++.+|++++|+|
T Consensus 2 ~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d 81 (165)
T cd04140 2 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCSKNICTLQITDTTGSHQFPAMQRLSISKGHAFILVYS 81 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCCcCCcchheEEEEEEECCEEEEEEEEECCCCCcchHHHHHHhhcCCEEEEEEE
Confidence 789999999999999999999998877777776644432 22345789999999999999888888999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHcCC--CCCCCcEEEEeeCCCcccccCH-HHHHHHhCcccccCCceeEEEeeecCCCChHHHH
Q 030429 90 AADRDSVPIARSELHELLMKP--SLSGIPLLVLGNKIDKSEALSK-QALVDQLGLESITDREVCCYMISCKDSINIDAVI 166 (177)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~iiv~nK~D~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~ 166 (177)
++++.+++++..|+..+.... ...+.|+++|+||+|+.+.... .+....+. .....+++++||++|.|++++|
T Consensus 82 ~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~----~~~~~~~~e~SA~~g~~v~~~f 157 (165)
T cd04140 82 VTSKQSLEELKPIYELICEIKGNNIEKIPIMLVGNKCDESHKREVSSNEGAACA----TEWNCAFMETSAKTNHNVQELF 157 (165)
T ss_pred CCCHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEECccccccCeecHHHHHHHH----HHhCCcEEEeecCCCCCHHHHH
Confidence 999999999988887664432 2256899999999999653221 11111111 1123478999999999999999
Q ss_pred HHHHHHh
Q 030429 167 DWLIKHS 173 (177)
Q Consensus 167 ~~l~~~~ 173 (177)
++|..+.
T Consensus 158 ~~l~~~~ 164 (165)
T cd04140 158 QELLNLE 164 (165)
T ss_pred HHHHhcc
Confidence 9998653
|
ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to |
| >cd04176 Rap2 Rap2 subgroup | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-32 Score=183.01 Aligned_cols=158 Identities=16% Similarity=0.309 Sum_probs=123.8
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccc-eeEEEEEeC--CEEEEEEecCCchhhHHhHHHHhcCCCEEEEEE
Q 030429 12 EMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVG-FNMRKVTKG--NVTIKLWDLGGQRRFRTMWERYCRGVSAILYVV 88 (177)
Q Consensus 12 ~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~-~~~~~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~ 88 (177)
++||+++|.+|||||||+++++.+.+...+.+|.+ .....+..+ .+.+++||+||++++...+..+++++|++++|+
T Consensus 1 ~~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~i~v~ 80 (163)
T cd04176 1 EYKVVVLGSGGVGKSALTVQFVSGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFIVVY 80 (163)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCchhheEEEEEEECCEEEEEEEEECCCcccccchHHHHHhhCCEEEEEE
Confidence 47999999999999999999999888777766654 222233333 467889999999999999999999999999999
Q ss_pred eCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccCHH-HHHHHhCcccccCCceeEEEeeecCCCChHHHHH
Q 030429 89 DAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQ-ALVDQLGLESITDREVCCYMISCKDSINIDAVID 167 (177)
Q Consensus 89 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~ 167 (177)
|++++.++.++..|+..+.......++|+++|+||+|+.+..... .....+.. ....+++++||++|.|++++|+
T Consensus 81 d~~~~~s~~~~~~~~~~~~~~~~~~~~piviv~nK~Dl~~~~~~~~~~~~~~~~----~~~~~~~~~Sa~~~~~v~~l~~ 156 (163)
T cd04176 81 SLVNQQTFQDIKPMRDQIVRVKGYEKVPIILVGNKVDLESEREVSSAEGRALAE----EWGCPFMETSAKSKTMVNELFA 156 (163)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcCccCHHHHHHHHH----HhCCEEEEecCCCCCCHHHHHH
Confidence 999999999999998888765444679999999999986532211 11122211 1124789999999999999999
Q ss_pred HHHHHh
Q 030429 168 WLIKHS 173 (177)
Q Consensus 168 ~l~~~~ 173 (177)
++.+.+
T Consensus 157 ~l~~~l 162 (163)
T cd04176 157 EIVRQM 162 (163)
T ss_pred HHHHhc
Confidence 998765
|
The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl |
| >cd01864 Rab19 Rab19 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-31 Score=177.62 Aligned_cols=158 Identities=26% Similarity=0.382 Sum_probs=124.7
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCcccee--EEEEEeCC--EEEEEEecCCchhhHHhHHHHhcCCCEEEE
Q 030429 11 QEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFN--MRKVTKGN--VTIKLWDLGGQRRFRTMWERYCRGVSAILY 86 (177)
Q Consensus 11 ~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~--~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~ 86 (177)
+.+||+++|++|+|||||++++..+.+.....++.+.. ...+..++ +.+++||+||++.+...+..+++.+|++++
T Consensus 2 ~~~kv~vvG~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~ll 81 (165)
T cd01864 2 FLFKIILIGDSNVGKTCVVQRFKSGTFSERQGNTIGVDFTMKTLEIEGKRVKLQIWDTAGQERFRTITQSYYRSANGAII 81 (165)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhhCCCcccCCCccceEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEE
Confidence 45899999999999999999999888877777766543 34455555 688999999999999988999999999999
Q ss_pred EEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccC--HHHHHHHhCcccccCCceeEEEeeecCCCChHH
Q 030429 87 VVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALS--KQALVDQLGLESITDREVCCYMISCKDSINIDA 164 (177)
Q Consensus 87 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 164 (177)
|+|++++.++..+..|+..+... ...+.|+++|+||+|+.+... ..+..+.... .....++++||++|.|+++
T Consensus 82 v~d~~~~~s~~~~~~~~~~i~~~-~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~----~~~~~~~e~Sa~~~~~v~~ 156 (165)
T cd01864 82 AYDITRRSSFESVPHWIEEVEKY-GASNVVLLLIGNKCDLEEQREVLFEEACTLAEK----NGMLAVLETSAKESQNVEE 156 (165)
T ss_pred EEECcCHHHHHhHHHHHHHHHHh-CCCCCcEEEEEECcccccccccCHHHHHHHHHH----cCCcEEEEEECCCCCCHHH
Confidence 99999999999999998888553 235789999999999875432 1222221111 1123689999999999999
Q ss_pred HHHHHHHHh
Q 030429 165 VIDWLIKHS 173 (177)
Q Consensus 165 l~~~l~~~~ 173 (177)
+|+++.+.+
T Consensus 157 ~~~~l~~~l 165 (165)
T cd01864 157 AFLLMATEL 165 (165)
T ss_pred HHHHHHHhC
Confidence 999998753
|
Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. |
| >cd01871 Rac1_like Rac1-like subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-31 Score=181.38 Aligned_cols=158 Identities=20% Similarity=0.254 Sum_probs=119.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEE-EEEe--CCEEEEEEecCCchhhHHhHHHHhcCCCEEEEEEe
Q 030429 13 MELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMR-KVTK--GNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVD 89 (177)
Q Consensus 13 ~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~--~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d 89 (177)
+||+++|.+|||||||+.++..+.+...+.+|.+.... .+.. ..+.+.+|||||++.+...+..++.++|++++|||
T Consensus 2 ~ki~iiG~~~vGKSsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d 81 (174)
T cd01871 2 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFS 81 (174)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCcCCCcceeeeEEEEEECCEEEEEEEEECCCchhhhhhhhhhcCCCCEEEEEEE
Confidence 69999999999999999999998888887777753322 2233 34789999999999999988999999999999999
Q ss_pred CCCCCCHHHHHH-HHHHHHcCCCCCCCcEEEEeeCCCcccccC-HHHHHHHhCc--------ccc-cCCceeEEEeeecC
Q 030429 90 AADRDSVPIARS-ELHELLMKPSLSGIPLLVLGNKIDKSEALS-KQALVDQLGL--------ESI-TDREVCCYMISCKD 158 (177)
Q Consensus 90 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~-~~~~~~~~~~--------~~~-~~~~~~~~~~Sa~~ 158 (177)
+++++++.++.. |+..+... .++.|+++|+||+|+.+... .+...+.... ... .....++++|||++
T Consensus 82 ~~~~~sf~~~~~~~~~~~~~~--~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~ 159 (174)
T cd01871 82 LVSPASFENVRAKWYPEVRHH--CPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALT 159 (174)
T ss_pred CCCHHHHHHHHHHHHHHHHHh--CCCCCEEEEeeChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCcEEEEecccc
Confidence 999999999964 55555433 24789999999999864321 1111111000 000 11224799999999
Q ss_pred CCChHHHHHHHHHH
Q 030429 159 SINIDAVIDWLIKH 172 (177)
Q Consensus 159 ~~~i~~l~~~l~~~ 172 (177)
|.|++++|+.+.+.
T Consensus 160 ~~~i~~~f~~l~~~ 173 (174)
T cd01871 160 QKGLKTVFDEAIRA 173 (174)
T ss_pred cCCHHHHHHHHHHh
Confidence 99999999999864
|
The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti |
| >cd04155 Arl3 Arl3 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-31 Score=178.04 Aligned_cols=163 Identities=33% Similarity=0.626 Sum_probs=137.3
Q ss_pred cccceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEeCCEEEEEEecCCchhhHHhHHHHhcCCCEEEEE
Q 030429 8 FFKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYV 87 (177)
Q Consensus 8 ~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v 87 (177)
...+.++|+++|++|||||||++++.+..+. ...++.+.....+...+..+.+||+||+..+...+..+++.+|++++|
T Consensus 10 ~~~~~~~v~i~G~~g~GKStLl~~l~~~~~~-~~~~t~g~~~~~i~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v 88 (173)
T cd04155 10 KSSEEPRILILGLDNAGKTTILKQLASEDIS-HITPTQGFNIKTVQSDGFKLNVWDIGGQRAIRPYWRNYFENTDCLIYV 88 (173)
T ss_pred ccCCccEEEEEccCCCCHHHHHHHHhcCCCc-ccCCCCCcceEEEEECCEEEEEEECCCCHHHHHHHHHHhcCCCEEEEE
Confidence 3455799999999999999999999976543 355677777777778889999999999999888888889999999999
Q ss_pred EeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccCHHHHHHHhCcccccCCceeEEEeeecCCCChHHHHH
Q 030429 88 VDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCKDSINIDAVID 167 (177)
Q Consensus 88 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~ 167 (177)
+|+++..++.....++..+.......++|+++++||+|+.+....+++.+.++......+.++++++||++|.|++++|+
T Consensus 89 ~D~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~i~~~l~~~~~~~~~~~~~~~Sa~~~~gi~~~~~ 168 (173)
T cd04155 89 IDSADKKRLEEAGAELVELLEEEKLAGVPVLVFANKQDLATAAPAEEIAEALNLHDLRDRTWHIQACSAKTGEGLQEGMN 168 (173)
T ss_pred EeCCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECCCCccCCCHHHHHHHcCCcccCCCeEEEEEeECCCCCCHHHHHH
Confidence 99999888888888888877665555799999999999987766777777777655555666788999999999999999
Q ss_pred HHHH
Q 030429 168 WLIK 171 (177)
Q Consensus 168 ~l~~ 171 (177)
+|.+
T Consensus 169 ~l~~ 172 (173)
T cd04155 169 WVCK 172 (173)
T ss_pred HHhc
Confidence 9975
|
Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation. |
| >cd04111 Rab39 Rab39 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-32 Score=187.90 Aligned_cols=159 Identities=24% Similarity=0.392 Sum_probs=127.3
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEE--EEe---CCEEEEEEecCCchhhHHhHHHHhcCCCEEEE
Q 030429 12 EMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRK--VTK---GNVTIKLWDLGGQRRFRTMWERYCRGVSAILY 86 (177)
Q Consensus 12 ~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~--~~~---~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~ 86 (177)
.+||+++|++|||||||++++.++.+.....+|.+..... +.. ..+.+++|||||++.+...+..+++++|++++
T Consensus 2 ~~KIvvvG~~~vGKTsLi~~l~~~~~~~~~~~ti~~d~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iil 81 (211)
T cd04111 2 QFRLIVIGDSTVGKSSLLKRFTEGRFAEVSDPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQERFRSITRSYYRNSVGVLL 81 (211)
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCceeceEEEEEEEEECCCCEEEEEEEeCCcchhHHHHHHHHhcCCcEEEE
Confidence 4799999999999999999999988887777777655433 322 24789999999999999988999999999999
Q ss_pred EEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccC--HHHHHHHhCcccccCCceeEEEeeecCCCChHH
Q 030429 87 VVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALS--KQALVDQLGLESITDREVCCYMISCKDSINIDA 164 (177)
Q Consensus 87 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 164 (177)
|||++++.+++++..|+..+.........|+++|+||+|+.+... .++. +.+.. ..+.+++++||++|.|+++
T Consensus 82 v~D~~~~~Sf~~l~~~~~~i~~~~~~~~~~iilvgNK~Dl~~~~~v~~~~~-~~~~~----~~~~~~~e~Sak~g~~v~e 156 (211)
T cd04111 82 VFDITNRESFEHVHDWLEEARSHIQPHRPVFILVGHKCDLESQRQVTREEA-EKLAK----DLGMKYIETSARTGDNVEE 156 (211)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEccccccccccCHHHH-HHHHH----HhCCEEEEEeCCCCCCHHH
Confidence 999999999999999999886654444678999999999875322 1221 12211 1225799999999999999
Q ss_pred HHHHHHHHhhh
Q 030429 165 VIDWLIKHSKT 175 (177)
Q Consensus 165 l~~~l~~~~~~ 175 (177)
+|++|.+.+.+
T Consensus 157 ~f~~l~~~~~~ 167 (211)
T cd04111 157 AFELLTQEIYE 167 (211)
T ss_pred HHHHHHHHHHH
Confidence 99999987654
|
Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. |
| >cd04103 Centaurin_gamma Centaurin gamma | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-32 Score=179.63 Aligned_cols=152 Identities=22% Similarity=0.320 Sum_probs=115.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEeCC--EEEEEEecCCchhhHHhHHHHhcCCCEEEEEEeC
Q 030429 13 MELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTKGN--VTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDA 90 (177)
Q Consensus 13 ~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~ 90 (177)
+||+++|++|||||||+.++..+.+.....++.+.....+..++ +.+.+||++|++.. .+++.+|++++|||+
T Consensus 1 ~ki~vvG~~gvGKTsli~~~~~~~f~~~~~~~~~~~~~~i~~~~~~~~l~i~D~~g~~~~-----~~~~~~~~~ilv~d~ 75 (158)
T cd04103 1 LKLGIVGNLQSGKSALVHRYLTGSYVQLESPEGGRFKKEVLVDGQSHLLLIRDEGGAPDA-----QFASWVDAVIFVFSL 75 (158)
T ss_pred CEEEEECCCCCcHHHHHHHHHhCCCCCCCCCCccceEEEEEECCEEEEEEEEECCCCCch-----hHHhcCCEEEEEEEC
Confidence 48999999999999999999988877665554443334455554 77999999998652 356789999999999
Q ss_pred CCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccc--cCH-HHHHHHhCcccccCCceeEEEeeecCCCChHHHHH
Q 030429 91 ADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEA--LSK-QALVDQLGLESITDREVCCYMISCKDSINIDAVID 167 (177)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~--~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~ 167 (177)
+++.+|+++..|+..+.........|+++|+||.|+... ... .+..+.+.. ....+.+++|||++|.||+++|+
T Consensus 76 ~~~~sf~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~~~~v~~~~~~~~~~---~~~~~~~~e~SAk~~~~i~~~f~ 152 (158)
T cd04103 76 ENEASFQTVYNLYHQLSSYRNISEIPLILVGTQDAISESNPRVIDDARARQLCA---DMKRCSYYETCATYGLNVERVFQ 152 (158)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeeHHHhhhcCCcccCHHHHHHHHH---HhCCCcEEEEecCCCCCHHHHHH
Confidence 999999999999998877655567899999999998431 111 111122211 11235799999999999999999
Q ss_pred HHHHH
Q 030429 168 WLIKH 172 (177)
Q Consensus 168 ~l~~~ 172 (177)
.+.+.
T Consensus 153 ~~~~~ 157 (158)
T cd04103 153 EAAQK 157 (158)
T ss_pred HHHhh
Confidence 99865
|
The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues. |
| >KOG0070 consensus GTP-binding ADP-ribosylation factor Arf1 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-32 Score=176.73 Aligned_cols=171 Identities=34% Similarity=0.665 Sum_probs=160.5
Q ss_pred cccccceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEeCCEEEEEEecCCchhhHHhHHHHhcCCCEEE
Q 030429 6 SLFFKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAIL 85 (177)
Q Consensus 6 ~~~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i 85 (177)
.+...+..+|+++|--++||||++.++..+..... .||++++...+.++++.|++||++|+.+++..|..|++..+++|
T Consensus 11 ~~~~~~e~~IlmlGLD~AGKTTILykLk~~E~vtt-vPTiGfnVE~v~ykn~~f~vWDvGGq~k~R~lW~~Y~~~t~~lI 89 (181)
T KOG0070|consen 11 GLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTT-VPTIGFNVETVEYKNISFTVWDVGGQEKLRPLWKHYFQNTQGLI 89 (181)
T ss_pred hccCcceEEEEEEeccCCCceeeeEeeccCCcccC-CCccccceeEEEEcceEEEEEecCCCcccccchhhhccCCcEEE
Confidence 56788999999999999999999999987766655 89999999999999999999999999999999999999999999
Q ss_pred EEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccCHHHHHHHhCcccccCCceeEEEeeecCCCChHHH
Q 030429 86 YVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCKDSINIDAV 165 (177)
Q Consensus 86 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l 165 (177)
+|+|.+|++.+.+.+..+..++........|+++++||.|++......++.+.+++.....+.+.+..|||.+|+|+.|.
T Consensus 90 fVvDS~Dr~Ri~eak~eL~~~l~~~~l~~~~llv~aNKqD~~~als~~ei~~~L~l~~l~~~~w~iq~~~a~~G~GL~eg 169 (181)
T KOG0070|consen 90 FVVDSSDRERIEEAKEELHRMLAEPELRNAPLLVFANKQDLPGALSAAEITNKLGLHSLRSRNWHIQSTCAISGEGLYEG 169 (181)
T ss_pred EEEeCCcHHHHHHHHHHHHHHHcCcccCCceEEEEechhhccccCCHHHHHhHhhhhccCCCCcEEeeccccccccHHHH
Confidence 99999999999999999999999877778999999999999999899999999999888889999999999999999999
Q ss_pred HHHHHHHhhhcC
Q 030429 166 IDWLIKHSKTAK 177 (177)
Q Consensus 166 ~~~l~~~~~~~~ 177 (177)
++++.+.+.+++
T Consensus 170 l~wl~~~~~~~~ 181 (181)
T KOG0070|consen 170 LDWLSNNLKKRR 181 (181)
T ss_pred HHHHHHHHhccC
Confidence 999999988754
|
|
| >cd04110 Rab35 Rab35 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-31 Score=185.69 Aligned_cols=159 Identities=25% Similarity=0.431 Sum_probs=127.7
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEE--EEEeC--CEEEEEEecCCchhhHHhHHHHhcCCCEEE
Q 030429 10 KQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMR--KVTKG--NVTIKLWDLGGQRRFRTMWERYCRGVSAIL 85 (177)
Q Consensus 10 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~--~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i 85 (177)
...+||+++|++|||||||++++.++.+...+.+|.+.... .+..+ .+.+.+||+||++.+...+..+++++++++
T Consensus 4 ~~~~kivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~a~~ii 83 (199)
T cd04110 4 DHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGERVKLQIWDTAGQERFRTITSTYYRGTHGVI 83 (199)
T ss_pred CceeEEEEECCCCCCHHHHHHHHhcCCCCCCcCccccceeEEEEEEECCEEEEEEEEeCCCchhHHHHHHHHhCCCcEEE
Confidence 35689999999999999999999988887777777775543 33333 468899999999999999999999999999
Q ss_pred EEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccC--HHHHHHHhCcccccCCceeEEEeeecCCCChH
Q 030429 86 YVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALS--KQALVDQLGLESITDREVCCYMISCKDSINID 163 (177)
Q Consensus 86 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 163 (177)
+|+|++++++++.+..|+..+.... ...|+++|+||+|+.+... .++..+.... .+.+++++||++|.|++
T Consensus 84 lv~D~~~~~s~~~~~~~~~~i~~~~--~~~piivVgNK~Dl~~~~~~~~~~~~~~~~~-----~~~~~~e~Sa~~~~gi~ 156 (199)
T cd04110 84 VVYDVTNGESFVNVKRWLQEIEQNC--DDVCKVLVGNKNDDPERKVVETEDAYKFAGQ-----MGISLFETSAKENINVE 156 (199)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhC--CCCCEEEEEECcccccccccCHHHHHHHHHH-----cCCEEEEEECCCCcCHH
Confidence 9999999999999999988875542 4689999999999876432 1222222111 12479999999999999
Q ss_pred HHHHHHHHHhhh
Q 030429 164 AVIDWLIKHSKT 175 (177)
Q Consensus 164 ~l~~~l~~~~~~ 175 (177)
++|++|.+.+.+
T Consensus 157 ~lf~~l~~~~~~ 168 (199)
T cd04110 157 EMFNCITELVLR 168 (199)
T ss_pred HHHHHHHHHHHH
Confidence 999999998764
|
Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is |
| >KOG0095 consensus GTPase Rab30, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-32 Score=171.31 Aligned_cols=161 Identities=24% Similarity=0.367 Sum_probs=133.7
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEE----EEeCCEEEEEEecCCchhhHHhHHHHhcCCCEEE
Q 030429 10 KQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRK----VTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAIL 85 (177)
Q Consensus 10 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~----~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i 85 (177)
+.-+||+++|..|+|||+|++++.++-|++....|++.++.. ++.+.+.+++|||+|+++|++....|++.+++++
T Consensus 5 kflfkivlvgnagvgktclvrrftqglfppgqgatigvdfmiktvev~gekiklqiwdtagqerfrsitqsyyrsahali 84 (213)
T KOG0095|consen 5 KFLFKIVLVGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEVNGEKIKLQIWDTAGQERFRSITQSYYRSAHALI 84 (213)
T ss_pred ceeEEEEEEccCCcCcchhhhhhhccCCCCCCCceeeeeEEEEEEEECCeEEEEEEeeccchHHHHHHHHHHhhhcceEE
Confidence 456899999999999999999999999999999999855443 4456689999999999999999999999999999
Q ss_pred EEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccCHHHHHHHhCcccccCCceeEEEeeecCCCChHHH
Q 030429 86 YVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCKDSINIDAV 165 (177)
Q Consensus 86 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l 165 (177)
+|||++...+|+-+..|+.++-.+.. .+.--|+|+||+|+.+.. ++.++.+..+......-|+++||++..|++.|
T Consensus 85 lvydiscqpsfdclpewlreie~yan-~kvlkilvgnk~d~~drr---evp~qigeefs~~qdmyfletsakea~nve~l 160 (213)
T KOG0095|consen 85 LVYDISCQPSFDCLPEWLREIEQYAN-NKVLKILVGNKIDLADRR---EVPQQIGEEFSEAQDMYFLETSAKEADNVEKL 160 (213)
T ss_pred EEEecccCcchhhhHHHHHHHHHHhh-cceEEEeeccccchhhhh---hhhHHHHHHHHHhhhhhhhhhcccchhhHHHH
Confidence 99999999999999999999977654 456678899999998762 33333333333334445789999999999999
Q ss_pred HHHHHHHhh
Q 030429 166 IDWLIKHSK 174 (177)
Q Consensus 166 ~~~l~~~~~ 174 (177)
|..+...+.
T Consensus 161 f~~~a~rli 169 (213)
T KOG0095|consen 161 FLDLACRLI 169 (213)
T ss_pred HHHHHHHHH
Confidence 999887654
|
|
| >cd04116 Rab9 Rab9 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-31 Score=178.45 Aligned_cols=159 Identities=25% Similarity=0.395 Sum_probs=125.5
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEE--EEE--eCCEEEEEEecCCchhhHHhHHHHhcCCCEEE
Q 030429 10 KQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMR--KVT--KGNVTIKLWDLGGQRRFRTMWERYCRGVSAIL 85 (177)
Q Consensus 10 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~--~~~--~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i 85 (177)
...+||+++|++|||||||++++.++.+.....++.+.... .+. ...+.+.+||+||++++...+..+++.+|+++
T Consensus 3 ~~~~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i 82 (170)
T cd04116 3 SSLLKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTLQIWDTAGQERFRSLRTPFYRGSDCCL 82 (170)
T ss_pred ceEEEEEEECCCCCCHHHHHHHHHcCCCCcCcCCceeeEEEEEEEEECCeEEEEEEEeCCChHHHHHhHHHHhcCCCEEE
Confidence 35689999999999999999999998888777777765432 233 34578899999999999999999999999999
Q ss_pred EEEeCCCCCCHHHHHHHHHHHHcCCC---CCCCcEEEEeeCCCccccc-CHHHHHHHhCcccccCCceeEEEeeecCCCC
Q 030429 86 YVVDAADRDSVPIARSELHELLMKPS---LSGIPLLVLGNKIDKSEAL-SKQALVDQLGLESITDREVCCYMISCKDSIN 161 (177)
Q Consensus 86 ~v~d~~~~~~~~~~~~~~~~~~~~~~---~~~~~~iiv~nK~D~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 161 (177)
+|||++++++++.+..|...+..... ..+.|+++|+||+|+.+.. ..++..+.... ....+++++||++|.|
T Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~----~~~~~~~e~Sa~~~~~ 158 (170)
T cd04116 83 LTFAVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVVLGNKNDIPERQVSTEEAQAWCRE----NGDYPYFETSAKDATN 158 (170)
T ss_pred EEEECCCHHHHHhHHHHHHHHHHhcccccCCCCcEEEEEECccccccccCHHHHHHHHHH----CCCCeEEEEECCCCCC
Confidence 99999999999999988887765432 2468999999999986432 22333222211 1223689999999999
Q ss_pred hHHHHHHHHHH
Q 030429 162 IDAVIDWLIKH 172 (177)
Q Consensus 162 i~~l~~~l~~~ 172 (177)
++++|+.+.+.
T Consensus 159 v~~~~~~~~~~ 169 (170)
T cd04116 159 VAAAFEEAVRR 169 (170)
T ss_pred HHHHHHHHHhh
Confidence 99999999875
|
Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX |
| >KOG0073 consensus GTP-binding ADP-ribosylation factor-like protein ARL2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.98 E-value=6.5e-31 Score=168.38 Aligned_cols=166 Identities=31% Similarity=0.594 Sum_probs=150.7
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEeCCEEEEEEecCCchhhHHhHHHHhcCCCEEEEEE
Q 030429 9 FKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVV 88 (177)
Q Consensus 9 ~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~ 88 (177)
.++.++|+++|..|+||||++++|.+.. .....+|.+++..+...+++++++||++||...++.|+.|+.+.|++|+|+
T Consensus 13 kerE~riLiLGLdNsGKTti~~kl~~~~-~~~i~pt~gf~Iktl~~~~~~L~iwDvGGq~~lr~~W~nYfestdglIwvv 91 (185)
T KOG0073|consen 13 KEREVRILILGLDNSGKTTIVKKLLGED-TDTISPTLGFQIKTLEYKGYTLNIWDVGGQKTLRSYWKNYFESTDGLIWVV 91 (185)
T ss_pred hhheeEEEEEecCCCCchhHHHHhcCCC-ccccCCccceeeEEEEecceEEEEEEcCCcchhHHHHHHhhhccCeEEEEE
Confidence 4568999999999999999999997444 677889999999999999999999999999999999999999999999999
Q ss_pred eCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccCHHHHHHHhCcccc-cCCceeEEEeeecCCCChHHHHH
Q 030429 89 DAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESI-TDREVCCYMISCKDSINIDAVID 167 (177)
Q Consensus 89 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Sa~~~~~i~~l~~ 167 (177)
|.+|+..+++....+..++...+..+.|++++.||.|+......+++...+..... ...+++.+.||+.+|+++.+-+.
T Consensus 92 DssD~~r~~e~~~~L~~lL~eerlaG~~~Lvlank~dl~~~l~~~~i~~~~~L~~l~ks~~~~l~~cs~~tge~l~~gid 171 (185)
T KOG0073|consen 92 DSSDRMRMQECKQELTELLVEERLAGAPLLVLANKQDLPGALSLEEISKALDLEELAKSHHWRLVKCSAVTGEDLLEGID 171 (185)
T ss_pred ECchHHHHHHHHHHHHHHHhhhhhcCCceEEEEecCcCccccCHHHHHHhhCHHHhccccCceEEEEeccccccHHHHHH
Confidence 99999999999999999988877778899999999999987777888887777666 66788999999999999999999
Q ss_pred HHHHHhhh
Q 030429 168 WLIKHSKT 175 (177)
Q Consensus 168 ~l~~~~~~ 175 (177)
||.+.+..
T Consensus 172 WL~~~l~~ 179 (185)
T KOG0073|consen 172 WLCDDLMS 179 (185)
T ss_pred HHHHHHHH
Confidence 99887654
|
|
| >PLN03110 Rab GTPase; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=2e-31 Score=186.33 Aligned_cols=163 Identities=21% Similarity=0.328 Sum_probs=130.0
Q ss_pred cccceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEE--EEEeC--CEEEEEEecCCchhhHHhHHHHhcCCCE
Q 030429 8 FFKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMR--KVTKG--NVTIKLWDLGGQRRFRTMWERYCRGVSA 83 (177)
Q Consensus 8 ~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~--~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~ 83 (177)
.....+||+++|++|||||||+++|.++.+...+.+|.+.... .+..+ .+.+++||+||++++...+..+++.+++
T Consensus 8 ~~~~~~Ki~ivG~~~vGKStLi~~l~~~~~~~~~~~t~g~~~~~~~v~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~~~ 87 (216)
T PLN03110 8 EYDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVG 87 (216)
T ss_pred ccCceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhCCCCE
Confidence 3456789999999999999999999988887777777775543 33333 4789999999999999999999999999
Q ss_pred EEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccCH-HHHHHHhCcccccCCceeEEEeeecCCCCh
Q 030429 84 ILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSK-QALVDQLGLESITDREVCCYMISCKDSINI 162 (177)
Q Consensus 84 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i 162 (177)
+++|+|++++.+++.+..|+..+.... ..+.|+++|+||+|+.+.... .+....+.. ...++++++||++|.|+
T Consensus 88 ~ilv~d~~~~~s~~~~~~~~~~~~~~~-~~~~piiiv~nK~Dl~~~~~~~~~~~~~l~~----~~~~~~~e~SA~~g~~v 162 (216)
T PLN03110 88 ALLVYDITKRQTFDNVQRWLRELRDHA-DSNIVIMMAGNKSDLNHLRSVAEEDGQALAE----KEGLSFLETSALEATNV 162 (216)
T ss_pred EEEEEECCChHHHHHHHHHHHHHHHhC-CCCCeEEEEEEChhcccccCCCHHHHHHHHH----HcCCEEEEEeCCCCCCH
Confidence 999999999999999999988775542 357899999999998653321 122222221 23458999999999999
Q ss_pred HHHHHHHHHHhhh
Q 030429 163 DAVIDWLIKHSKT 175 (177)
Q Consensus 163 ~~l~~~l~~~~~~ 175 (177)
+++|+.|.+.+.+
T Consensus 163 ~~lf~~l~~~i~~ 175 (216)
T PLN03110 163 EKAFQTILLEIYH 175 (216)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999987754
|
|
| >cd04134 Rho3 Rho3 subfamily | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.2e-31 Score=184.08 Aligned_cols=161 Identities=20% Similarity=0.255 Sum_probs=122.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEE-EE--eCCEEEEEEecCCchhhHHhHHHHhcCCCEEEEEEe
Q 030429 13 MELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRK-VT--KGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVD 89 (177)
Q Consensus 13 ~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~-~~--~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d 89 (177)
.||+++|++|||||||++++.++.+...+.+|.+..... +. ...+.+++||++|++.+...+..++.++|++++|||
T Consensus 1 ~kivivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~a~~~ilv~d 80 (189)
T cd04134 1 RKVVVLGDGACGKTSLLNVFTRGYFPQVYEPTVFENYVHDIFVDGLHIELSLWDTAGQEEFDRLRSLSYADTDVIMLCFS 80 (189)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCccCCcceeeeEEEEEECCEEEEEEEEECCCChhccccccccccCCCEEEEEEE
Confidence 389999999999999999999998887777776544332 22 234789999999999998888888999999999999
Q ss_pred CCCCCCHHHHH-HHHHHHHcCCCCCCCcEEEEeeCCCcccccCHHHHHHHh---------Ccccc-cCCceeEEEeeecC
Q 030429 90 AADRDSVPIAR-SELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQL---------GLESI-TDREVCCYMISCKD 158 (177)
Q Consensus 90 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~---------~~~~~-~~~~~~~~~~Sa~~ 158 (177)
++++++++.+. .|+..+.... .+.|+++|+||+|+.+.....+..... +.... ....+++++|||++
T Consensus 81 v~~~~sf~~~~~~~~~~i~~~~--~~~piilvgNK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~ 158 (189)
T cd04134 81 VDSPDSLENVESKWLGEIREHC--PGVKLVLVALKCDLREARNERDDLQRYGKHTISYEEGLAVAKRINALRYLECSAKL 158 (189)
T ss_pred CCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEEChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEccCCc
Confidence 99999999886 4666665432 478999999999997643222111111 00001 11235799999999
Q ss_pred CCChHHHHHHHHHHhhh
Q 030429 159 SINIDAVIDWLIKHSKT 175 (177)
Q Consensus 159 ~~~i~~l~~~l~~~~~~ 175 (177)
|.|++++|++|.+.+..
T Consensus 159 ~~~v~e~f~~l~~~~~~ 175 (189)
T cd04134 159 NRGVNEAFTEAARVALN 175 (189)
T ss_pred CCCHHHHHHHHHHHHhc
Confidence 99999999999988764
|
Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. |
| >cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily | Back alignment and domain information |
|---|
Probab=99.98 E-value=4.7e-31 Score=184.08 Aligned_cols=162 Identities=18% Similarity=0.263 Sum_probs=122.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEE-EEE--eCCEEEEEEecCCchhhHHhHHHHhcCCCEEEEEEe
Q 030429 13 MELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMR-KVT--KGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVD 89 (177)
Q Consensus 13 ~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~--~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d 89 (177)
+||+++|++|||||||+.+|.++.+...+.+|.+..+. .+. ...+.+.+|||+|++.|....+.++.++|++++|||
T Consensus 2 ~KIvvvGd~~vGKTsLi~~~~~~~f~~~y~pTi~~~~~~~~~~~~~~v~L~iwDt~G~e~~~~l~~~~~~~~d~illvfd 81 (222)
T cd04173 2 CKIVVVGDAECGKTALLQVFAKDAYPGSYVPTVFENYTASFEIDKRRIELNMWDTSGSSYYDNVRPLAYPDSDAVLICFD 81 (222)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCccCCccccceEEEEEECCEEEEEEEEeCCCcHHHHHHhHHhccCCCEEEEEEE
Confidence 69999999999999999999999998888888775543 233 345789999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccCH-HHH--------HHHhCcccccCCc-eeEEEeeecCC
Q 030429 90 AADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSK-QAL--------VDQLGLESITDRE-VCCYMISCKDS 159 (177)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~-~~~--------~~~~~~~~~~~~~-~~~~~~Sa~~~ 159 (177)
++++++++.+..+|...... ..++.|+++|+||+|+.+.... ... ....+.......+ .+|++|||+++
T Consensus 82 is~~~Sf~~i~~~w~~~~~~-~~~~~piiLVgnK~DL~~~~~~~~~~~~~~~~pIs~e~g~~~ak~~~~~~y~E~SAk~~ 160 (222)
T cd04173 82 ISRPETLDSVLKKWQGETQE-FCPNAKVVLVGCKLDMRTDLATLRELSKQRLIPVTHEQGTVLAKQVGAVSYVECSSRSS 160 (222)
T ss_pred CCCHHHHHHHHHHHHHHHHh-hCCCCCEEEEEECcccccchhhhhhhhhccCCccCHHHHHHHHHHcCCCEEEEcCCCcC
Confidence 99999999996555443333 2257899999999999653211 100 0000111111122 47999999999
Q ss_pred CC-hHHHHHHHHHHhhh
Q 030429 160 IN-IDAVIDWLIKHSKT 175 (177)
Q Consensus 160 ~~-i~~l~~~l~~~~~~ 175 (177)
.+ |+++|+.+......
T Consensus 161 ~~~V~~~F~~~~~~~~~ 177 (222)
T cd04173 161 ERSVRDVFHVATVASLG 177 (222)
T ss_pred CcCHHHHHHHHHHHHHh
Confidence 85 99999999886544
|
Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma |
| >cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily | Back alignment and domain information |
|---|
Probab=99.98 E-value=2.3e-31 Score=179.81 Aligned_cols=159 Identities=28% Similarity=0.451 Sum_probs=125.5
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEE--EEEeC--CEEEEEEecCCchhhH-HhHHHHhcCCCEEEE
Q 030429 12 EMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMR--KVTKG--NVTIKLWDLGGQRRFR-TMWERYCRGVSAILY 86 (177)
Q Consensus 12 ~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~--~~~~~--~~~~~~~D~~g~~~~~-~~~~~~~~~~d~~i~ 86 (177)
.+||+++|++|||||||+++++++.+...+.++.+.... .+..+ .+.+++||+||++++. ..+..+++++|++++
T Consensus 2 ~~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~d~~i~ 81 (170)
T cd04115 2 IFKIIVIGDSNVGKTCLTYRFCAGRFPERTEATIGVDFRERTVEIDGERIKVQLWDTAGQERFRKSMVQHYYRNVHAVVF 81 (170)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCCccccceeEEEEEEEEEECCeEEEEEEEeCCChHHHHHhhHHHhhcCCCEEEE
Confidence 479999999999999999999988887777777765443 23333 4789999999999887 467778999999999
Q ss_pred EEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccCH-HHHHHHhCcccccCCceeEEEeeecC---CCCh
Q 030429 87 VVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSK-QALVDQLGLESITDREVCCYMISCKD---SINI 162 (177)
Q Consensus 87 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~---~~~i 162 (177)
|+|+++++++.....|+..+.......+.|+++|+||+|+...... .+..+.+.. ....+++++||++ +.++
T Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~----~~~~~~~e~Sa~~~~~~~~i 157 (170)
T cd04115 82 VYDVTNMASFHSLPSWIEECEQHSLPNEVPRILVGNKCDLREQIQVPTDLAQRFAD----AHSMPLFETSAKDPSENDHV 157 (170)
T ss_pred EEECCCHHHHHhHHHHHHHHHHhcCCCCCCEEEEEECccchhhcCCCHHHHHHHHH----HcCCcEEEEeccCCcCCCCH
Confidence 9999999999999999888876655567999999999998654321 122222211 1225799999999 8999
Q ss_pred HHHHHHHHHHhh
Q 030429 163 DAVIDWLIKHSK 174 (177)
Q Consensus 163 ~~l~~~l~~~~~ 174 (177)
+++|..+.+.++
T Consensus 158 ~~~f~~l~~~~~ 169 (170)
T cd04115 158 EAIFMTLAHKLK 169 (170)
T ss_pred HHHHHHHHHHhh
Confidence 999999998764
|
Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine |
| >cd04112 Rab26 Rab26 subfamily | Back alignment and domain information |
|---|
Probab=99.98 E-value=8.3e-31 Score=180.16 Aligned_cols=158 Identities=28% Similarity=0.436 Sum_probs=123.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCC-CCCCccceeEEE--EEe--CCEEEEEEecCCchhhHHhHHHHhcCCCEEEEE
Q 030429 13 MELSLIGLQNAGKTSLVNTIATGGYSE-DMIPTVGFNMRK--VTK--GNVTIKLWDLGGQRRFRTMWERYCRGVSAILYV 87 (177)
Q Consensus 13 ~~i~i~G~~~~GKSsli~~l~~~~~~~-~~~~t~~~~~~~--~~~--~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v 87 (177)
+||+++|++|||||||++++.++.+.. .+.+|.+..... +.. ..+.+++|||||+.++......+++.+|++++|
T Consensus 1 ~Ki~vvG~~~vGKTSli~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~i~v 80 (191)
T cd04112 1 FKVMLLGDSGVGKTCLLVRFKDGAFLNGNFIATVGIDFRNKVVTVDGVKVKLQIWDTAGQERFRSVTHAYYRDAHALLLL 80 (191)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCccCcCCcccceeEEEEEEECCEEEEEEEEeCCCcHHHHHhhHHHccCCCEEEEE
Confidence 589999999999999999999888753 455666544432 333 347899999999999998888999999999999
Q ss_pred EeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccC--HHHHHHHhCcccccCCceeEEEeeecCCCChHHH
Q 030429 88 VDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALS--KQALVDQLGLESITDREVCCYMISCKDSINIDAV 165 (177)
Q Consensus 88 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l 165 (177)
+|++++++++++..|+..+.... ....|+++|+||+|+..... .++.. .+.. ....+++++||++|.|++++
T Consensus 81 ~D~~~~~s~~~~~~~~~~i~~~~-~~~~piiiv~NK~Dl~~~~~~~~~~~~-~l~~----~~~~~~~e~Sa~~~~~v~~l 154 (191)
T cd04112 81 YDITNKASFDNIRAWLTEIKEYA-QEDVVIMLLGNKADMSGERVVKREDGE-RLAK----EYGVPFMETSAKTGLNVELA 154 (191)
T ss_pred EECCCHHHHHHHHHHHHHHHHhC-CCCCcEEEEEEcccchhccccCHHHHH-HHHH----HcCCeEEEEeCCCCCCHHHH
Confidence 99999999999999888876543 24689999999999864321 22211 1111 11247999999999999999
Q ss_pred HHHHHHHhhhc
Q 030429 166 IDWLIKHSKTA 176 (177)
Q Consensus 166 ~~~l~~~~~~~ 176 (177)
|++|.+.+.+.
T Consensus 155 ~~~l~~~~~~~ 165 (191)
T cd04112 155 FTAVAKELKHR 165 (191)
T ss_pred HHHHHHHHHHh
Confidence 99999987654
|
First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. |
| >cd04106 Rab23_lke Rab23-like subfamily | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.3e-30 Score=174.75 Aligned_cols=153 Identities=23% Similarity=0.432 Sum_probs=122.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEE--EE----eCCEEEEEEecCCchhhHHhHHHHhcCCCEEEE
Q 030429 13 MELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRK--VT----KGNVTIKLWDLGGQRRFRTMWERYCRGVSAILY 86 (177)
Q Consensus 13 ~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~--~~----~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~ 86 (177)
+||+++|.+|+|||||++++.++.+...+.+|.+..... +. ...+.+++||+||++++...+..+++++|++++
T Consensus 1 ~kv~~vG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~v~ 80 (162)
T cd04106 1 IKVIVVGNGNVGKSSMIQRFVKGIFTKDYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQEEFDAITKAYYRGAQACIL 80 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcEEEEEEEEEEEEcCCCCEEEEEEeeCCchHHHHHhHHHHhcCCCEEEE
Confidence 489999999999999999999988887777777755533 22 335789999999999999999999999999999
Q ss_pred EEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccC--HHHHHHHhCcccccCCceeEEEeeecCCCChHH
Q 030429 87 VVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALS--KQALVDQLGLESITDREVCCYMISCKDSINIDA 164 (177)
Q Consensus 87 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 164 (177)
|+|++++++++.+..|+..+.... .+.|+++|+||+|+..... .++..+.... ...+++++||++|.|+++
T Consensus 81 v~d~~~~~s~~~l~~~~~~~~~~~--~~~p~iiv~nK~Dl~~~~~v~~~~~~~~~~~-----~~~~~~~~Sa~~~~~v~~ 153 (162)
T cd04106 81 VFSTTDRESFEAIESWKEKVEAEC--GDIPMVLVQTKIDLLDQAVITNEEAEALAKR-----LQLPLFRTSVKDDFNVTE 153 (162)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhC--CCCCEEEEEEChhcccccCCCHHHHHHHHHH-----cCCeEEEEECCCCCCHHH
Confidence 999999999999998888775432 4789999999999865322 2222221111 123799999999999999
Q ss_pred HHHHHHHH
Q 030429 165 VIDWLIKH 172 (177)
Q Consensus 165 l~~~l~~~ 172 (177)
++++|.+.
T Consensus 154 l~~~l~~~ 161 (162)
T cd04106 154 LFEYLAEK 161 (162)
T ss_pred HHHHHHHh
Confidence 99999764
|
Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G |
| >cd01866 Rab2 Rab2 subfamily | Back alignment and domain information |
|---|
Probab=99.98 E-value=4e-31 Score=178.29 Aligned_cols=158 Identities=21% Similarity=0.298 Sum_probs=125.6
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEE--EEEeC--CEEEEEEecCCchhhHHhHHHHhcCCCEEEEE
Q 030429 12 EMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMR--KVTKG--NVTIKLWDLGGQRRFRTMWERYCRGVSAILYV 87 (177)
Q Consensus 12 ~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~--~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v 87 (177)
.+||+++|.+|||||||++++.++.+.....++.+.... .+..+ ...+.+||+||++++......+++.+|++++|
T Consensus 4 ~~ki~vvG~~~vGKSsLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~il~v 83 (168)
T cd01866 4 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLV 83 (168)
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEEE
Confidence 479999999999999999999988877776666654432 23333 47899999999999998888999999999999
Q ss_pred EeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccc--CHHHHHHHhCcccccCCceeEEEeeecCCCChHHH
Q 030429 88 VDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEAL--SKQALVDQLGLESITDREVCCYMISCKDSINIDAV 165 (177)
Q Consensus 88 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l 165 (177)
+|++++.++..+..|+..+.... .++.|+++|+||+|+.+.. ..++...... ..++.++++||+++.|++++
T Consensus 84 ~d~~~~~s~~~~~~~~~~~~~~~-~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~e~Sa~~~~~i~~~ 157 (168)
T cd01866 84 YDITRRETFNHLTSWLEDARQHS-NSNMTIMLIGNKCDLESRREVSYEEGEAFAK-----EHGLIFMETSAKTASNVEEA 157 (168)
T ss_pred EECCCHHHHHHHHHHHHHHHHhC-CCCCcEEEEEECcccccccCCCHHHHHHHHH-----HcCCEEEEEeCCCCCCHHHH
Confidence 99999999999999998886543 3578999999999987432 2222222211 12347999999999999999
Q ss_pred HHHHHHHhhh
Q 030429 166 IDWLIKHSKT 175 (177)
Q Consensus 166 ~~~l~~~~~~ 175 (177)
|+++.+.+.+
T Consensus 158 ~~~~~~~~~~ 167 (168)
T cd01866 158 FINTAKEIYE 167 (168)
T ss_pred HHHHHHHHHh
Confidence 9999988764
|
Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur |
| >cd04125 RabA_like RabA-like subfamily | Back alignment and domain information |
|---|
Probab=99.98 E-value=3.2e-31 Score=181.83 Aligned_cols=157 Identities=24% Similarity=0.371 Sum_probs=124.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEE--EEEe--CCEEEEEEecCCchhhHHhHHHHhcCCCEEEEEE
Q 030429 13 MELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMR--KVTK--GNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVV 88 (177)
Q Consensus 13 ~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~--~~~~--~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~ 88 (177)
+||+++|++|||||||++++.++.+...+.++.+.... .+.. ..+.+.+||+||++.+...+..+++++|++++||
T Consensus 1 ~ki~v~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~iilv~ 80 (188)
T cd04125 1 FKVVIIGDYGVGKSSLLKRFTEDEFSESTKSTIGVDFKIKTVYIENKIIKLQIWDTNGQERFRSLNNSYYRGAHGYLLVY 80 (188)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHhhHHHHccCCCEEEEEE
Confidence 58999999999999999999999887767777764433 3333 3477899999999999999999999999999999
Q ss_pred eCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccC--HHHHHHHhCcccccCCceeEEEeeecCCCChHHHH
Q 030429 89 DAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALS--KQALVDQLGLESITDREVCCYMISCKDSINIDAVI 166 (177)
Q Consensus 89 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~ 166 (177)
|+++++++..+..|+..+.... ....|+++|+||+|+.+... .++.. .+.. ...++++++||++|.|++++|
T Consensus 81 d~~~~~s~~~i~~~~~~i~~~~-~~~~~~ivv~nK~Dl~~~~~v~~~~~~-~~~~----~~~~~~~evSa~~~~~i~~~f 154 (188)
T cd04125 81 DVTDQESFENLKFWINEINRYA-RENVIKVIVANKSDLVNNKVVDSNIAK-SFCD----SLNIPFFETSAKQSINVEEAF 154 (188)
T ss_pred ECcCHHHHHHHHHHHHHHHHhC-CCCCeEEEEEECCCCcccccCCHHHHH-HHHH----HcCCeEEEEeCCCCCCHHHHH
Confidence 9999999999999888876542 24589999999999875332 12211 1111 123479999999999999999
Q ss_pred HHHHHHhhh
Q 030429 167 DWLIKHSKT 175 (177)
Q Consensus 167 ~~l~~~~~~ 175 (177)
++|.+.+.+
T Consensus 155 ~~l~~~~~~ 163 (188)
T cd04125 155 ILLVKLIIK 163 (188)
T ss_pred HHHHHHHHH
Confidence 999998765
|
RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. |
| >cd04132 Rho4_like Rho4-like subfamily | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.3e-30 Score=178.61 Aligned_cols=157 Identities=20% Similarity=0.284 Sum_probs=121.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEE-EEe---CCEEEEEEecCCchhhHHhHHHHhcCCCEEEEEE
Q 030429 13 MELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRK-VTK---GNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVV 88 (177)
Q Consensus 13 ~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~-~~~---~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~ 88 (177)
+||+++|++|||||||++++.++.+...+.++.+..+.. +.. ..+.+.+|||||++++......++.++|++++|+
T Consensus 1 ~ki~vvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~v~ 80 (187)
T cd04132 1 KKIVVVGDGGCGKTCLLIVYSQGKFPEEYVPTVFENYVTNIQGPNGKIIELALWDTAGQEEYDRLRPLSYPDVDVLLICY 80 (187)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCCCCCeeeeeeEEEEEecCCcEEEEEEEECCCchhHHHHHHHhCCCCCEEEEEE
Confidence 589999999999999999999998887777776644332 322 3578999999999999998888999999999999
Q ss_pred eCCCCCCHHHHHH-HHHHHHcCCCCCCCcEEEEeeCCCccccc------CHHHHHHHhCcccccCCceeEEEeeecCCCC
Q 030429 89 DAADRDSVPIARS-ELHELLMKPSLSGIPLLVLGNKIDKSEAL------SKQALVDQLGLESITDREVCCYMISCKDSIN 161 (177)
Q Consensus 89 d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~iiv~nK~D~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 161 (177)
|++++.+++++.. |+..+... ..+.|+++|+||+|+.+.. ..++..+... .....+++++||++|.|
T Consensus 81 d~~~~~s~~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~----~~~~~~~~e~Sa~~~~~ 154 (187)
T cd04132 81 AVDNPTSLDNVEDKWFPEVNHF--CPGTPIMLVGLKTDLRKDKNLDRKVTPAQAESVAK----KQGAFAYLECSAKTMEN 154 (187)
T ss_pred ECCCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEeChhhhhCccccCCcCHHHHHHHHH----HcCCcEEEEccCCCCCC
Confidence 9999999999865 55554332 2478999999999986532 1122111111 01112689999999999
Q ss_pred hHHHHHHHHHHhhh
Q 030429 162 IDAVIDWLIKHSKT 175 (177)
Q Consensus 162 i~~l~~~l~~~~~~ 175 (177)
++++|+.+.+.+.+
T Consensus 155 v~~~f~~l~~~~~~ 168 (187)
T cd04132 155 VEEVFDTAIEEALK 168 (187)
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999988764
|
Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. |
| >KOG0087 consensus GTPase Rab11/YPT3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.5e-31 Score=178.27 Aligned_cols=161 Identities=24% Similarity=0.398 Sum_probs=136.8
Q ss_pred cccccceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEE----EEeCCEEEEEEecCCchhhHHhHHHHhcCC
Q 030429 6 SLFFKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRK----VTKGNVTIKLWDLGGQRRFRTMWERYCRGV 81 (177)
Q Consensus 6 ~~~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~----~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~ 81 (177)
+-...+.+||+++|++++|||-|+.|+....|.....+|++..+.+ ++.+.+..++|||+||++|+.....|++++
T Consensus 8 ~~~~dylFKiVliGDS~VGKsnLlsRftrnEF~~~SksTIGvef~t~t~~vd~k~vkaqIWDTAGQERyrAitSaYYrgA 87 (222)
T KOG0087|consen 8 SEEYDYLFKIVLIGDSAVGKSNLLSRFTRNEFSLESKSTIGVEFATRTVNVDGKTVKAQIWDTAGQERYRAITSAYYRGA 87 (222)
T ss_pred ccccceEEEEEEeCCCccchhHHHHHhcccccCcccccceeEEEEeeceeecCcEEEEeeecccchhhhccccchhhccc
Confidence 3566788999999999999999999999999999999999966665 334558899999999999999999999999
Q ss_pred CEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccc-----cCHHHHHHHhCcccccCCceeEEEeee
Q 030429 82 SAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEA-----LSKQALVDQLGLESITDREVCCYMISC 156 (177)
Q Consensus 82 d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~Sa 156 (177)
.++++|||++...+|+++..|+.++..+.. .++++++|+||+|+... ++...+.+..+ ..++++||
T Consensus 88 vGAllVYDITr~~Tfenv~rWL~ELRdhad-~nivimLvGNK~DL~~lraV~te~~k~~Ae~~~--------l~f~EtSA 158 (222)
T KOG0087|consen 88 VGALLVYDITRRQTFENVERWLKELRDHAD-SNIVIMLVGNKSDLNHLRAVPTEDGKAFAEKEG--------LFFLETSA 158 (222)
T ss_pred ceeEEEEechhHHHHHHHHHHHHHHHhcCC-CCeEEEEeecchhhhhccccchhhhHhHHHhcC--------ceEEEecc
Confidence 999999999999999999999999977654 68999999999999662 12223333332 36899999
Q ss_pred cCCCChHHHHHHHHHHhhh
Q 030429 157 KDSINIDAVIDWLIKHSKT 175 (177)
Q Consensus 157 ~~~~~i~~l~~~l~~~~~~ 175 (177)
.++.|+++.|+.+...+.+
T Consensus 159 l~~tNVe~aF~~~l~~I~~ 177 (222)
T KOG0087|consen 159 LDATNVEKAFERVLTEIYK 177 (222)
T ss_pred cccccHHHHHHHHHHHHHH
Confidence 9999999999998887653
|
|
| >KOG0093 consensus GTPase Rab3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.7e-31 Score=166.27 Aligned_cols=158 Identities=25% Similarity=0.461 Sum_probs=135.9
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEE----eCCEEEEEEecCCchhhHHhHHHHhcCCCEEE
Q 030429 10 KQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVT----KGNVTIKLWDLGGQRRFRTMWERYCRGVSAIL 85 (177)
Q Consensus 10 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~----~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i 85 (177)
...+|++++|+..+|||||+.++++..+.....+|.++.+.... .+.+.+++|||.|+++++...-.++++++++|
T Consensus 19 DymfKlliiGnssvGKTSfl~ry~ddSFt~afvsTvGidFKvKTvyr~~kRiklQiwDTagqEryrtiTTayyRgamgfi 98 (193)
T KOG0093|consen 19 DYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVYRSDKRIKLQIWDTAGQERYRTITTAYYRGAMGFI 98 (193)
T ss_pred cceeeEEEEccCCccchhhhHHhhccccccceeeeeeeeEEEeEeeecccEEEEEEEecccchhhhHHHHHHhhccceEE
Confidence 45679999999999999999999999999999999998766532 34589999999999999999999999999999
Q ss_pred EEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccC-----HHHHHHHhCcccccCCceeEEEeeecCCC
Q 030429 86 YVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALS-----KQALVDQLGLESITDREVCCYMISCKDSI 160 (177)
Q Consensus 86 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 160 (177)
++||+++.+++...+.|.-.+... .-.+.|+|+|+||||+.++.. ...+.++++. .+|++||+.+.
T Consensus 99 LmyDitNeeSf~svqdw~tqIkty-sw~naqvilvgnKCDmd~eRvis~e~g~~l~~~LGf--------efFEtSaK~Ni 169 (193)
T KOG0093|consen 99 LMYDITNEESFNSVQDWITQIKTY-SWDNAQVILVGNKCDMDSERVISHERGRQLADQLGF--------EFFETSAKENI 169 (193)
T ss_pred EEEecCCHHHHHHHHHHHHHheee-eccCceEEEEecccCCccceeeeHHHHHHHHHHhCh--------HHhhhcccccc
Confidence 999999999999999998887444 446789999999999976532 3456666665 58999999999
Q ss_pred ChHHHHHHHHHHhhhc
Q 030429 161 NIDAVIDWLIKHSKTA 176 (177)
Q Consensus 161 ~i~~l~~~l~~~~~~~ 176 (177)
|++++|+.++..+-++
T Consensus 170 nVk~~Fe~lv~~Ic~k 185 (193)
T KOG0093|consen 170 NVKQVFERLVDIICDK 185 (193)
T ss_pred cHHHHHHHHHHHHHHH
Confidence 9999999999887643
|
|
| >cd01868 Rab11_like Rab11-like | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.7e-31 Score=177.38 Aligned_cols=156 Identities=22% Similarity=0.363 Sum_probs=124.5
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEE--EEEeCC--EEEEEEecCCchhhHHhHHHHhcCCCEEEEE
Q 030429 12 EMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMR--KVTKGN--VTIKLWDLGGQRRFRTMWERYCRGVSAILYV 87 (177)
Q Consensus 12 ~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~--~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v 87 (177)
.+||+++|++|||||||++++.++.+.....++.+.... .+..++ +.+++||+||+..+...+..+++.++++++|
T Consensus 3 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v 82 (165)
T cd01868 3 LFKIVLIGDSGVGKSNLLSRFTRNEFNLDSKSTIGVEFATRSIQIDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLV 82 (165)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHCCCCEEEEE
Confidence 479999999999999999999988887777777765433 344443 6789999999999999999999999999999
Q ss_pred EeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccC--HHHHHHHhCcccccCCceeEEEeeecCCCChHHH
Q 030429 88 VDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALS--KQALVDQLGLESITDREVCCYMISCKDSINIDAV 165 (177)
Q Consensus 88 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l 165 (177)
+|++++.++..+..|+..+.... ..+.|+++|+||+|+.+... .++...... ..+.+++++||++|.|++++
T Consensus 83 ~d~~~~~s~~~~~~~~~~~~~~~-~~~~pi~vv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~v~~l 156 (165)
T cd01868 83 YDITKKQTFENVERWLKELRDHA-DSNIVIMLVGNKSDLRHLRAVPTEEAKAFAE-----KNGLSFIETSALDGTNVEEA 156 (165)
T ss_pred EECcCHHHHHHHHHHHHHHHHhC-CCCCeEEEEEECccccccccCCHHHHHHHHH-----HcCCEEEEEECCCCCCHHHH
Confidence 99999999999999888876543 23589999999999865322 222222221 12357999999999999999
Q ss_pred HHHHHHHh
Q 030429 166 IDWLIKHS 173 (177)
Q Consensus 166 ~~~l~~~~ 173 (177)
|+++.+.+
T Consensus 157 ~~~l~~~i 164 (165)
T cd01868 157 FKQLLTEI 164 (165)
T ss_pred HHHHHHHh
Confidence 99998765
|
Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP |
| >cd04143 Rhes_like Rhes_like subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.3e-30 Score=182.89 Aligned_cols=157 Identities=20% Similarity=0.341 Sum_probs=124.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccc-eeEEEEEeC--CEEEEEEecCCchhhHHhHHHHhcCCCEEEEEEe
Q 030429 13 MELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVG-FNMRKVTKG--NVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVD 89 (177)
Q Consensus 13 ~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~-~~~~~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d 89 (177)
+||+++|.+|||||||+++++++.+...+.+|.+ .....+..+ .+.+++|||+|++.+..+...++..+|++++|||
T Consensus 1 ~KVvvlG~~gvGKTSLi~r~~~~~f~~~y~pTi~d~~~k~~~i~~~~~~l~I~Dt~G~~~~~~~~~~~~~~ad~iIlVfd 80 (247)
T cd04143 1 YRMVVLGASKVGKTAIVSRFLGGRFEEQYTPTIEDFHRKLYSIRGEVYQLDILDTSGNHPFPAMRRLSILTGDVFILVFS 80 (247)
T ss_pred CEEEEECcCCCCHHHHHHHHHcCCCCCCCCCChhHhEEEEEEECCEEEEEEEEECCCChhhhHHHHHHhccCCEEEEEEe
Confidence 4899999999999999999999988877777765 233334444 4788999999999998888888899999999999
Q ss_pred CCCCCCHHHHHHHHHHHHcCC--------CCCCCcEEEEeeCCCcccc--cCHHHHHHHhCcccccCCceeEEEeeecCC
Q 030429 90 AADRDSVPIARSELHELLMKP--------SLSGIPLLVLGNKIDKSEA--LSKQALVDQLGLESITDREVCCYMISCKDS 159 (177)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~iiv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 159 (177)
++++++|+++..|+..+.... ...+.|+++|+||+|+.+. ...++..+.++. ...+.++++||++|
T Consensus 81 v~~~~Sf~~i~~~~~~I~~~k~~~~~~~~~~~~~piIivgNK~Dl~~~~~v~~~ei~~~~~~----~~~~~~~evSAktg 156 (247)
T cd04143 81 LDNRESFEEVCRLREQILETKSCLKNKTKENVKIPMVICGNKADRDFPREVQRDEVEQLVGG----DENCAYFEVSAKKN 156 (247)
T ss_pred CCCHHHHHHHHHHHHHHHHhhcccccccccCCCCcEEEEEECccchhccccCHHHHHHHHHh----cCCCEEEEEeCCCC
Confidence 999999999998888876431 2246899999999999752 233444443321 12457999999999
Q ss_pred CChHHHHHHHHHHh
Q 030429 160 INIDAVIDWLIKHS 173 (177)
Q Consensus 160 ~~i~~l~~~l~~~~ 173 (177)
.|++++|++|.+.+
T Consensus 157 ~gI~elf~~L~~~~ 170 (247)
T cd04143 157 SNLDEMFRALFSLA 170 (247)
T ss_pred CCHHHHHHHHHHHh
Confidence 99999999999865
|
This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l |
| >cd01892 Miro2 Miro2 subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.2e-30 Score=174.78 Aligned_cols=157 Identities=17% Similarity=0.198 Sum_probs=123.9
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcCCCC-CCCCCccceeE--EEEEeCC--EEEEEEecCCchhhHHhHHHHhcCCCEE
Q 030429 10 KQEMELSLIGLQNAGKTSLVNTIATGGYS-EDMIPTVGFNM--RKVTKGN--VTIKLWDLGGQRRFRTMWERYCRGVSAI 84 (177)
Q Consensus 10 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~-~~~~~t~~~~~--~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~~ 84 (177)
++.+||+++|.+|||||||+++++++.+. ..+.+|.+... ..+..++ +.+.+||++|+..+......++.++|++
T Consensus 2 ~~~~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~~T~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~d~~ 81 (169)
T cd01892 2 RNVFLCFVLGAKGSGKSALLRAFLGRSFSLNAYSPTIKPRYAVNTVEVYGQEKYLILREVGEDEVAILLNDAELAACDVA 81 (169)
T ss_pred CeEEEEEEECCCCCcHHHHHHHHhCCCCCcccCCCccCcceEEEEEEECCeEEEEEEEecCCcccccccchhhhhcCCEE
Confidence 57799999999999999999999998887 77777776443 2333333 7889999999999988888889999999
Q ss_pred EEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccc-----CHHHHHHHhCcccccCCceeEEEeeecCC
Q 030429 85 LYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEAL-----SKQALVDQLGLESITDREVCCYMISCKDS 159 (177)
Q Consensus 85 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 159 (177)
++|+|++++.+++.+..|+..+... .+.|+++|+||+|+.+.. ..+++.+.++. ..++++||++|
T Consensus 82 llv~d~~~~~s~~~~~~~~~~~~~~---~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~-------~~~~~~Sa~~~ 151 (169)
T cd01892 82 CLVYDSSDPKSFSYCAEVYKKYFML---GEIPCLFVAAKADLDEQQQRYEVQPDEFCRKLGL-------PPPLHFSSKLG 151 (169)
T ss_pred EEEEeCCCHHHHHHHHHHHHHhccC---CCCeEEEEEEcccccccccccccCHHHHHHHcCC-------CCCEEEEeccC
Confidence 9999999999998888877765322 368999999999986432 12333333321 13589999999
Q ss_pred CChHHHHHHHHHHhhhc
Q 030429 160 INIDAVIDWLIKHSKTA 176 (177)
Q Consensus 160 ~~i~~l~~~l~~~~~~~ 176 (177)
.|++++|+.+.+.+...
T Consensus 152 ~~v~~lf~~l~~~~~~~ 168 (169)
T cd01892 152 DSSNELFTKLATAAQYP 168 (169)
T ss_pred ccHHHHHHHHHHHhhCC
Confidence 99999999999987643
|
Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature. |
| >cd04113 Rab4 Rab4 subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.5e-31 Score=176.80 Aligned_cols=155 Identities=22% Similarity=0.343 Sum_probs=122.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEE--EEEeC--CEEEEEEecCCchhhHHhHHHHhcCCCEEEEEE
Q 030429 13 MELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMR--KVTKG--NVTIKLWDLGGQRRFRTMWERYCRGVSAILYVV 88 (177)
Q Consensus 13 ~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~--~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~ 88 (177)
+||+++|++|||||||++++.++.+.....++.+.... .+..+ .+.+++||+||++.+...+..+++.+|++++|+
T Consensus 1 ~ki~v~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~~~~i~v~ 80 (161)
T cd04113 1 FKFIIIGSSGTGKSCLLHRFVENKFKEDSQHTIGVEFGSKIIRVGGKRVKLQIWDTAGQERFRSVTRSYYRGAAGALLVY 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEECcchHHHHHhHHHHhcCCCEEEEEE
Confidence 58999999999999999999988887777776664433 23333 478899999999999998899999999999999
Q ss_pred eCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccC--HHHHHHHhCcccccCCceeEEEeeecCCCChHHHH
Q 030429 89 DAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALS--KQALVDQLGLESITDREVCCYMISCKDSINIDAVI 166 (177)
Q Consensus 89 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~ 166 (177)
|+++++++..+..|+..+... ..++.|+++|+||+|+.+... .++....... .++.++++||+++.|++++|
T Consensus 81 d~~~~~s~~~~~~~~~~~~~~-~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~-----~~~~~~~~Sa~~~~~i~~~~ 154 (161)
T cd04113 81 DITNRTSFEALPTWLSDARAL-ASPNIVVILVGNKSDLADQREVTFLEASRFAQE-----NGLLFLETSALTGENVEEAF 154 (161)
T ss_pred ECCCHHHHHHHHHHHHHHHHh-CCCCCeEEEEEEchhcchhccCCHHHHHHHHHH-----cCCEEEEEECCCCCCHHHHH
Confidence 999999999999888876443 236789999999999865322 2222222211 12579999999999999999
Q ss_pred HHHHHHh
Q 030429 167 DWLIKHS 173 (177)
Q Consensus 167 ~~l~~~~ 173 (177)
+++.+.+
T Consensus 155 ~~~~~~~ 161 (161)
T cd04113 155 LKCARSI 161 (161)
T ss_pred HHHHHhC
Confidence 9998753
|
Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p |
| >smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.5e-30 Score=179.32 Aligned_cols=151 Identities=22% Similarity=0.418 Sum_probs=123.0
Q ss_pred EcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEE----eCCEEEEEEecCCchhhHHhHHHHhcCCCEEEEEEeCCCC
Q 030429 18 IGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVT----KGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAADR 93 (177)
Q Consensus 18 ~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~----~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~ 93 (177)
+|.+|||||||+++++.+.+...+.+|.+....... ...+.+.+|||+|+++|..++..+++++|++++|||++++
T Consensus 1 vG~~~vGKTsLi~r~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~ilV~D~t~~ 80 (200)
T smart00176 1 VGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTAR 80 (200)
T ss_pred CCCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhcCCCEEEEEEECCCh
Confidence 699999999999999988888888888876654432 3468999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccCHHHHHHHhCcccccCCceeEEEeeecCCCChHHHHHHHHHHh
Q 030429 94 DSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCKDSINIDAVIDWLIKHS 173 (177)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~ 173 (177)
.++..+..|+..+.... .+.|+++|+||+|+.......+..+ + .....+.+++|||++|.||+++|++|.+.+
T Consensus 81 ~S~~~i~~w~~~i~~~~--~~~piilvgNK~Dl~~~~v~~~~~~-~----~~~~~~~~~e~SAk~~~~v~~~F~~l~~~i 153 (200)
T smart00176 81 VTYKNVPNWHRDLVRVC--ENIPIVLCGNKVDVKDRKVKAKSIT-F----HRKKNLQYYDISAKSNYNFEKPFLWLARKL 153 (200)
T ss_pred HHHHHHHHHHHHHHHhC--CCCCEEEEEECcccccccCCHHHHH-H----HHHcCCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 99999999888886643 4789999999999854321111111 1 122356899999999999999999999877
Q ss_pred hh
Q 030429 174 KT 175 (177)
Q Consensus 174 ~~ 175 (177)
.+
T Consensus 154 ~~ 155 (200)
T smart00176 154 IG 155 (200)
T ss_pred Hh
Confidence 54
|
Ran is involved in the active transport of proteins through nuclear pores. |
| >KOG0086 consensus GTPase Rab4, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.1e-31 Score=166.63 Aligned_cols=161 Identities=22% Similarity=0.331 Sum_probs=133.7
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEE----EEeCCEEEEEEecCCchhhHHhHHHHhcCCCEE
Q 030429 9 FKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRK----VTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAI 84 (177)
Q Consensus 9 ~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~----~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~ 84 (177)
...-+|++++|+.|+|||+|+.+|....+..+...|+++.+.. +-.+.+.+++|||+|+++|++..+.|++++.++
T Consensus 6 YDyLfKfl~iG~aGtGKSCLLh~Fie~kfkDdssHTiGveFgSrIinVGgK~vKLQIWDTAGQErFRSVtRsYYRGAAGA 85 (214)
T KOG0086|consen 6 YDYLFKFLVIGSAGTGKSCLLHQFIENKFKDDSSHTIGVEFGSRIVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGA 85 (214)
T ss_pred hhhhheeEEeccCCCChhHHHHHHHHhhhcccccceeeeeecceeeeecCcEEEEEEeecccHHHHHHHHHHHhccccce
Confidence 4556899999999999999999999999999988888865554 345668999999999999999999999999999
Q ss_pred EEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccCH--HHHHHHhCcccccCCceeEEEeeecCCCCh
Q 030429 85 LYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSK--QALVDQLGLESITDREVCCYMISCKDSINI 162 (177)
Q Consensus 85 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i 162 (177)
++|||++++++|..+..|+.+.... ..+++-+++++||.|+.+..+. .+.. .+.......+.++|+++|+|+
T Consensus 86 lLVYD~TsrdsfnaLtnWL~DaR~l-As~nIvviL~GnKkDL~~~R~VtflEAs-----~FaqEnel~flETSa~TGeNV 159 (214)
T KOG0086|consen 86 LLVYDITSRDSFNALTNWLTDARTL-ASPNIVVILCGNKKDLDPEREVTFLEAS-----RFAQENELMFLETSALTGENV 159 (214)
T ss_pred EEEEeccchhhHHHHHHHHHHHHhh-CCCcEEEEEeCChhhcChhhhhhHHHHH-----hhhcccceeeeeecccccccH
Confidence 9999999999999999999998554 3367788999999999775432 2222 223334557899999999999
Q ss_pred HHHHHHHHHHhhh
Q 030429 163 DAVIDWLIKHSKT 175 (177)
Q Consensus 163 ~~l~~~l~~~~~~ 175 (177)
+|.|-...+.+..
T Consensus 160 EEaFl~c~~tIl~ 172 (214)
T KOG0086|consen 160 EEAFLKCARTILN 172 (214)
T ss_pred HHHHHHHHHHHHH
Confidence 9999888776643
|
|
| >cd01861 Rab6 Rab6 subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=9.5e-31 Score=175.16 Aligned_cols=156 Identities=21% Similarity=0.349 Sum_probs=122.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEE--EEEeCC--EEEEEEecCCchhhHHhHHHHhcCCCEEEEEE
Q 030429 13 MELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMR--KVTKGN--VTIKLWDLGGQRRFRTMWERYCRGVSAILYVV 88 (177)
Q Consensus 13 ~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~--~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~ 88 (177)
+||+++|++|||||||++++.++.+.....++.+.... .+..++ +.+++||+||+..+...+..+++.+|++++|+
T Consensus 1 ~ki~liG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~ii~v~ 80 (161)
T cd01861 1 HKLVFLGDQSVGKTSIITRFMYDTFDNQYQATIGIDFLSKTMYLEDKTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVY 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCccCCCceeeeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEEEE
Confidence 48999999999999999999988887766666654433 333333 67999999999999999999999999999999
Q ss_pred eCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccC-HHHHHHHhCcccccCCceeEEEeeecCCCChHHHHH
Q 030429 89 DAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALS-KQALVDQLGLESITDREVCCYMISCKDSINIDAVID 167 (177)
Q Consensus 89 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~ 167 (177)
|+++++++.....|+..+..... .+.|+++|+||+|+.+... ..+....+.. ...++++++||+++.|++++++
T Consensus 81 d~~~~~s~~~~~~~~~~~~~~~~-~~~~iilv~nK~D~~~~~~~~~~~~~~~~~----~~~~~~~~~Sa~~~~~v~~l~~ 155 (161)
T cd01861 81 DITNRQSFDNTDKWIDDVRDERG-NDVIIVLVGNKTDLSDKRQVSTEEGEKKAK----ELNAMFIETSAKAGHNVKELFR 155 (161)
T ss_pred ECcCHHHHHHHHHHHHHHHHhCC-CCCEEEEEEEChhccccCccCHHHHHHHHH----HhCCEEEEEeCCCCCCHHHHHH
Confidence 99999999999999888765432 3689999999999954321 1111122111 1235799999999999999999
Q ss_pred HHHHHh
Q 030429 168 WLIKHS 173 (177)
Q Consensus 168 ~l~~~~ 173 (177)
+|.+.+
T Consensus 156 ~i~~~l 161 (161)
T cd01861 156 KIASAL 161 (161)
T ss_pred HHHHhC
Confidence 998753
|
Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate |
| >cd04101 RabL4 RabL4 (Rab-like4) subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.3e-30 Score=175.05 Aligned_cols=155 Identities=16% Similarity=0.303 Sum_probs=121.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcC--CCCCCCCCccceeEEE--EE---eCCEEEEEEecCCchhhHHhHHHHhcCCCEEE
Q 030429 13 MELSLIGLQNAGKTSLVNTIATG--GYSEDMIPTVGFNMRK--VT---KGNVTIKLWDLGGQRRFRTMWERYCRGVSAIL 85 (177)
Q Consensus 13 ~~i~i~G~~~~GKSsli~~l~~~--~~~~~~~~t~~~~~~~--~~---~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i 85 (177)
+||+++|++|||||||++++... .+...+.++.+..... +. ...+.+.+||+||+..+..++..++.++|+++
T Consensus 1 ~ki~vvG~~~~GKtsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii 80 (164)
T cd04101 1 LRCAVVGDPAVGKTAFVQMFHSNGAVFPKNYLMTTGCDFVVKEVPVDTDNTVELFIFDSAGQELYSDMVSNYWESPSVFI 80 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCccCCCceEEEEEEEEEEeCCCCEEEEEEEECCCHHHHHHHHHHHhCCCCEEE
Confidence 58999999999999999999854 5667777777655432 22 34589999999999999998899999999999
Q ss_pred EEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccCHHH-HHHHhCcccccCCceeEEEeeecCCCChHH
Q 030429 86 YVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQA-LVDQLGLESITDREVCCYMISCKDSINIDA 164 (177)
Q Consensus 86 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 164 (177)
+|+|+++++++..+..|+..+.... ...|+++|+||+|+.+...... ..+.+. ...+.+++++||+++.|+++
T Consensus 81 ~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~----~~~~~~~~~~Sa~~~~gi~~ 154 (164)
T cd04101 81 LVYDVSNKASFENCSRWVNKVRTAS--KHMPGVLVGNKMDLADKAEVTDAQAQAFA----QANQLKFFKTSALRGVGYEE 154 (164)
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhC--CCCCEEEEEECcccccccCCCHHHHHHHH----HHcCCeEEEEeCCCCCChHH
Confidence 9999999999999888888776543 4689999999999865432211 111111 11124789999999999999
Q ss_pred HHHHHHHHh
Q 030429 165 VIDWLIKHS 173 (177)
Q Consensus 165 l~~~l~~~~ 173 (177)
+|+.+.+.+
T Consensus 155 l~~~l~~~~ 163 (164)
T cd04101 155 PFESLARAF 163 (164)
T ss_pred HHHHHHHHh
Confidence 999999875
|
RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown. |
| >cd01860 Rab5_related Rab5-related subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.6e-30 Score=172.72 Aligned_cols=156 Identities=27% Similarity=0.416 Sum_probs=124.0
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeE--EEEE--eCCEEEEEEecCCchhhHHhHHHHhcCCCEEEEE
Q 030429 12 EMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNM--RKVT--KGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYV 87 (177)
Q Consensus 12 ~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~--~~~~--~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v 87 (177)
.+||+++|++|||||||++++.++.+.....++.+... ..+. ...+.+.+||+||++++...+..+++++|++++|
T Consensus 1 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v 80 (163)
T cd01860 1 QFKLVLLGDSSVGKSSLVLRFVKNEFSENQESTIGAAFLTQTVNLDDTTVKFEIWDTAGQERYRSLAPMYYRGAAAAIVV 80 (163)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhccCCEEEEE
Confidence 47999999999999999999998887775666665332 2333 3457899999999999998888899999999999
Q ss_pred EeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccc--CHHHHHHHhCcccccCCceeEEEeeecCCCChHHH
Q 030429 88 VDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEAL--SKQALVDQLGLESITDREVCCYMISCKDSINIDAV 165 (177)
Q Consensus 88 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l 165 (177)
+|+++++++.....|+..+..... ...|+++++||+|+.+.. ..++..+.... ....++++||++|.|++++
T Consensus 81 ~d~~~~~s~~~~~~~~~~~~~~~~-~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~-----~~~~~~~~Sa~~~~~v~~l 154 (163)
T cd01860 81 YDITSEESFEKAKSWVKELQRNAS-PNIIIALVGNKADLESKRQVSTEEAQEYADE-----NGLLFFETSAKTGENVNEL 154 (163)
T ss_pred EECcCHHHHHHHHHHHHHHHHhCC-CCCeEEEEEECccccccCcCCHHHHHHHHHH-----cCCEEEEEECCCCCCHHHH
Confidence 999999999999999888866543 678999999999987422 22222222211 1247999999999999999
Q ss_pred HHHHHHHh
Q 030429 166 IDWLIKHS 173 (177)
Q Consensus 166 ~~~l~~~~ 173 (177)
+++|.+.+
T Consensus 155 ~~~l~~~l 162 (163)
T cd01860 155 FTEIAKKL 162 (163)
T ss_pred HHHHHHHh
Confidence 99999875
|
This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo |
| >smart00175 RAB Rab subfamily of small GTPases | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.8e-30 Score=174.25 Aligned_cols=157 Identities=25% Similarity=0.458 Sum_probs=125.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEE--EEEeCC--EEEEEEecCCchhhHHhHHHHhcCCCEEEEEE
Q 030429 13 MELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMR--KVTKGN--VTIKLWDLGGQRRFRTMWERYCRGVSAILYVV 88 (177)
Q Consensus 13 ~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~--~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~ 88 (177)
+||+++|++|||||||++++.+..+.....++.+.... .+..++ +.+++||+||+..+......+++.+|++++|+
T Consensus 1 ~kv~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~ilv~ 80 (164)
T smart00175 1 FKIILIGDSGVGKSSLLSRFTDGKFSEQYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQERFRSITSSYYRGAVGALLVY 80 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhCCCCEEEEEE
Confidence 58999999999999999999988887776676665433 344444 78999999999999998899999999999999
Q ss_pred eCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccc--CHHHHHHHhCcccccCCceeEEEeeecCCCChHHHH
Q 030429 89 DAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEAL--SKQALVDQLGLESITDREVCCYMISCKDSINIDAVI 166 (177)
Q Consensus 89 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~ 166 (177)
|++++++++.+..|+..+..... ...|+++|+||+|+.+.. ..+...+... ..+++++++|+++|.|+++++
T Consensus 81 d~~~~~s~~~~~~~l~~~~~~~~-~~~pivvv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~e~Sa~~~~~i~~l~ 154 (164)
T smart00175 81 DITNRESFENLKNWLKELREYAD-PNVVIMLVGNKSDLEDQRQVSREEAEAFAE-----EHGLPFFETSAKTNTNVEEAF 154 (164)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCC-CCCeEEEEEEchhcccccCCCHHHHHHHHH-----HcCCeEEEEeCCCCCCHHHHH
Confidence 99999999999888887765532 579999999999987532 2222222211 122469999999999999999
Q ss_pred HHHHHHhhh
Q 030429 167 DWLIKHSKT 175 (177)
Q Consensus 167 ~~l~~~~~~ 175 (177)
++|.+.+.+
T Consensus 155 ~~i~~~~~~ 163 (164)
T smart00175 155 EELAREILK 163 (164)
T ss_pred HHHHHHHhh
Confidence 999998765
|
Rab GTPases are implicated in vesicle trafficking. |
| >cd04142 RRP22 RRP22 subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.2e-30 Score=179.83 Aligned_cols=160 Identities=20% Similarity=0.253 Sum_probs=118.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeE--EEEEeCC--EEEEEEecCCchhhH--------HhHHHHhcC
Q 030429 13 MELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNM--RKVTKGN--VTIKLWDLGGQRRFR--------TMWERYCRG 80 (177)
Q Consensus 13 ~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~--~~~~~~~--~~~~~~D~~g~~~~~--------~~~~~~~~~ 80 (177)
+||+++|.+|||||||++++.++.+...+.++.+... ..+..++ +.+++|||||...+. .....+++.
T Consensus 1 ~kI~ivG~~~vGKTsLi~~~~~~~f~~~~~pt~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~~~~~e~~~~~~~~~~~ 80 (198)
T cd04142 1 VRVAVLGAPGVGKTAIVRQFLAQEFPEEYIPTEHRRLYRPAVVLSGRVYDLHILDVPNMQRYPGTAGQEWMDPRFRGLRN 80 (198)
T ss_pred CEEEEECCCCCcHHHHHHHHHcCCCCcccCCccccccceeEEEECCEEEEEEEEeCCCcccCCccchhHHHHHHHhhhcc
Confidence 5899999999999999999999888877777765333 2333444 788999999965431 112345788
Q ss_pred CCEEEEEEeCCCCCCHHHHHHHHHHHHcCC--CCCCCcEEEEeeCCCcccccCH-HHHHHHhCcccccCCceeEEEeeec
Q 030429 81 VSAILYVVDAADRDSVPIARSELHELLMKP--SLSGIPLLVLGNKIDKSEALSK-QALVDQLGLESITDREVCCYMISCK 157 (177)
Q Consensus 81 ~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~--~~~~~~~iiv~nK~D~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~ 157 (177)
+|++++|||++++++++.+..|+..+.... ...++|+++|+||+|+.+.... .+..+.+.. ...++++++|||+
T Consensus 81 ad~iilv~D~~~~~S~~~~~~~~~~i~~~~~~~~~~~piiivgNK~Dl~~~~~~~~~~~~~~~~---~~~~~~~~e~Sak 157 (198)
T cd04142 81 SRAFILVYDICSPDSFHYVKLLRQQILETRPAGNKEPPIVVVGNKRDQQRHRFAPRHVLSVLVR---KSWKCGYLECSAK 157 (198)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHhcccCCCCCCEEEEEECccccccccccHHHHHHHHH---HhcCCcEEEecCC
Confidence 999999999999999999998888776643 2357899999999999653211 111122111 1124579999999
Q ss_pred CCCChHHHHHHHHHHhhh
Q 030429 158 DSINIDAVIDWLIKHSKT 175 (177)
Q Consensus 158 ~~~~i~~l~~~l~~~~~~ 175 (177)
+|.|++++|+.+.+.+..
T Consensus 158 ~g~~v~~lf~~i~~~~~~ 175 (198)
T cd04142 158 YNWHILLLFKELLISATT 175 (198)
T ss_pred CCCCHHHHHHHHHHHhhc
Confidence 999999999999987653
|
RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated. |
| >cd01862 Rab7 Rab7 subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=8.8e-30 Score=172.18 Aligned_cols=160 Identities=27% Similarity=0.437 Sum_probs=123.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEE--EEEe--CCEEEEEEecCCchhhHHhHHHHhcCCCEEEEEE
Q 030429 13 MELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMR--KVTK--GNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVV 88 (177)
Q Consensus 13 ~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~--~~~~--~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~ 88 (177)
+||+++|++|||||||++++.++.+.....++.+.+.. .+.. ..+.+++||+||++.+...+..+++++|++++|+
T Consensus 1 ~ki~viG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~ 80 (172)
T cd01862 1 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVTVDDKLVTLQIWDTAGQERFQSLGVAFYRGADCCVLVY 80 (172)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCcCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHhHHHHHhcCCCEEEEEE
Confidence 58999999999999999999988887776666664432 2333 3467889999999999999999999999999999
Q ss_pred eCCCCCCHHHHHHHHHHHHcCCC---CCCCcEEEEeeCCCccccc--CHHHHHHHhCcccccCCceeEEEeeecCCCChH
Q 030429 89 DAADRDSVPIARSELHELLMKPS---LSGIPLLVLGNKIDKSEAL--SKQALVDQLGLESITDREVCCYMISCKDSINID 163 (177)
Q Consensus 89 d~~~~~~~~~~~~~~~~~~~~~~---~~~~~~iiv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 163 (177)
|++++.++++...|...+..... ..++|+++|+||+|+.+.. ..++....... ....+++++|+++|.|++
T Consensus 81 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~----~~~~~~~~~Sa~~~~gv~ 156 (172)
T cd01862 81 DVTNPKSFESLDSWRDEFLIQASPSDPENFPFVVLGNKIDLEEKRQVSTKKAQQWCQS----NGNIPYFETSAKEAINVE 156 (172)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCccCCCCceEEEEEECcccccccccCHHHHHHHHHH----cCCceEEEEECCCCCCHH
Confidence 99999999888887776654432 2378999999999997421 22332222211 112479999999999999
Q ss_pred HHHHHHHHHhhhc
Q 030429 164 AVIDWLIKHSKTA 176 (177)
Q Consensus 164 ~l~~~l~~~~~~~ 176 (177)
++++++.+.+.++
T Consensus 157 ~l~~~i~~~~~~~ 169 (172)
T cd01862 157 QAFETIARKALEQ 169 (172)
T ss_pred HHHHHHHHHHHhc
Confidence 9999999877653
|
Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C- |
| >KOG0079 consensus GTP-binding protein H-ray, small G protein superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=9.5e-32 Score=169.60 Aligned_cols=159 Identities=25% Similarity=0.410 Sum_probs=130.8
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEE----EEeCCEEEEEEecCCchhhHHhHHHHhcCCCEEEEE
Q 030429 12 EMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRK----VTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYV 87 (177)
Q Consensus 12 ~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~----~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v 87 (177)
-++.+|+|++|+|||||+.+|....|...+..|++.++.. ++...+.+++||++|+++|+.+...++++.+++++|
T Consensus 8 LfkllIigDsgVGKssLl~rF~ddtFs~sYitTiGvDfkirTv~i~G~~VkLqIwDtAGqErFrtitstyyrgthgv~vV 87 (198)
T KOG0079|consen 8 LFKLLIIGDSGVGKSSLLLRFADDTFSGSYITTIGVDFKIRTVDINGDRVKLQIWDTAGQERFRTITSTYYRGTHGVIVV 87 (198)
T ss_pred HHHHHeecCCcccHHHHHHHHhhcccccceEEEeeeeEEEEEeecCCcEEEEEEeecccHHHHHHHHHHHccCCceEEEE
Confidence 4678999999999999999999998998888888855543 335568999999999999999999999999999999
Q ss_pred EeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccCHHHHHHHhCcccccCCceeEEEeeecCCCChHHHHH
Q 030429 88 VDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCKDSINIDAVID 167 (177)
Q Consensus 88 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~ 167 (177)
||.++.+||.+...|+.++...+. ..|-++|+||.|.++..-...... .......++.+|++|+++++|++..|.
T Consensus 88 YDVTn~ESF~Nv~rWLeei~~ncd--sv~~vLVGNK~d~~~RrvV~t~dA---r~~A~~mgie~FETSaKe~~NvE~mF~ 162 (198)
T KOG0079|consen 88 YDVTNGESFNNVKRWLEEIRNNCD--SVPKVLVGNKNDDPERRVVDTEDA---RAFALQMGIELFETSAKENENVEAMFH 162 (198)
T ss_pred EECcchhhhHhHHHHHHHHHhcCc--cccceecccCCCCccceeeehHHH---HHHHHhcCchheehhhhhcccchHHHH
Confidence 999999999999999999977654 788999999999876532211100 111222344799999999999999999
Q ss_pred HHHHHhhh
Q 030429 168 WLIKHSKT 175 (177)
Q Consensus 168 ~l~~~~~~ 175 (177)
.|.+...+
T Consensus 163 cit~qvl~ 170 (198)
T KOG0079|consen 163 CITKQVLQ 170 (198)
T ss_pred HHHHHHHH
Confidence 99887654
|
|
| >cd01863 Rab18 Rab18 subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.6e-30 Score=171.90 Aligned_cols=155 Identities=26% Similarity=0.441 Sum_probs=123.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEE--EEe--CCEEEEEEecCCchhhHHhHHHHhcCCCEEEEEE
Q 030429 13 MELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRK--VTK--GNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVV 88 (177)
Q Consensus 13 ~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~--~~~--~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~ 88 (177)
+||+++|++|||||||++++.++.+.....++.+..... +.. ..+.+.+||+||++.+......+++.+|++++|+
T Consensus 1 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~ 80 (161)
T cd01863 1 LKILLIGDSGVGKSSLLLRFTDDTFDPDLAATIGVDFKVKTLTVDGKKVKLAIWDTAGQERFRTLTSSYYRGAQGVILVY 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCcccCCcccceEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhCCCCEEEEEE
Confidence 589999999999999999999888766666666644332 233 3478999999999999888888999999999999
Q ss_pred eCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccc-CHHHHHHHhCcccccCCceeEEEeeecCCCChHHHHH
Q 030429 89 DAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEAL-SKQALVDQLGLESITDREVCCYMISCKDSINIDAVID 167 (177)
Q Consensus 89 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~ 167 (177)
|++++.++.....|+..+.........|+++|+||+|+.... ..++..+... ...++++++||++|.|++++++
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iv~nK~D~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~gi~~~~~ 155 (161)
T cd01863 81 DVTRRDTFTNLETWLNELETYSTNNDIVKMLVGNKIDKENREVTREEGLKFAR-----KHNMLFIETSAKTRDGVQQAFE 155 (161)
T ss_pred ECCCHHHHHhHHHHHHHHHHhCCCCCCcEEEEEECCcccccccCHHHHHHHHH-----HcCCEEEEEecCCCCCHHHHHH
Confidence 999999999999888877666555679999999999997432 2222222221 1234799999999999999999
Q ss_pred HHHHH
Q 030429 168 WLIKH 172 (177)
Q Consensus 168 ~l~~~ 172 (177)
.+.+.
T Consensus 156 ~~~~~ 160 (161)
T cd01863 156 ELVEK 160 (161)
T ss_pred HHHHh
Confidence 99875
|
Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos |
| >cd01893 Miro1 Miro1 subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.5e-30 Score=173.40 Aligned_cols=160 Identities=20% Similarity=0.244 Sum_probs=116.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEE--EEeCCEEEEEEecCCchhhHHhHHHHhcCCCEEEEEEeC
Q 030429 13 MELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRK--VTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDA 90 (177)
Q Consensus 13 ~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~--~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~ 90 (177)
+||+++|.+|||||||++++.++.+......+.+..... +....+.+.+||+||+..+...+..++..+|++++|+|+
T Consensus 1 ~kv~ivG~~~vGKTsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d~ 80 (166)
T cd01893 1 VRIVLIGDEGVGKSSLIMSLVSEEFPENVPRVLPEITIPADVTPERVPTTIVDTSSRPQDRANLAAEIRKANVICLVYSV 80 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCCccCCCcccceEeeeeecCCeEEEEEEeCCCchhhhHHHhhhcccCCEEEEEEEC
Confidence 489999999999999999999888865544433322222 334568899999999988887777788999999999999
Q ss_pred CCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccCHH---HHHHHhCcccccCCceeEEEeeecCCCChHHHHH
Q 030429 91 ADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQ---ALVDQLGLESITDREVCCYMISCKDSINIDAVID 167 (177)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~ 167 (177)
+++.+++.+..+|...+.... .+.|+++|+||+|+.+..... +....+... . ....+++++||++|.|++++|+
T Consensus 81 ~~~~s~~~~~~~~~~~i~~~~-~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~-~-~~~~~~~e~Sa~~~~~v~~lf~ 157 (166)
T cd01893 81 DRPSTLERIRTKWLPLIRRLG-VKVPIILVGNKSDLRDGSSQAGLEEEMLPIMNE-F-REIETCVECSAKTLINVSEVFY 157 (166)
T ss_pred CCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEEchhcccccchhHHHHHHHHHHHH-H-hcccEEEEeccccccCHHHHHH
Confidence 999999998654443333222 378999999999997654321 111111000 0 0112689999999999999999
Q ss_pred HHHHHhhh
Q 030429 168 WLIKHSKT 175 (177)
Q Consensus 168 ~l~~~~~~ 175 (177)
.+.+.+.+
T Consensus 158 ~~~~~~~~ 165 (166)
T cd01893 158 YAQKAVLH 165 (166)
T ss_pred HHHHHhcC
Confidence 99987654
|
Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature. |
| >cd04177 RSR1 RSR1 subgroup | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.4e-30 Score=175.66 Aligned_cols=158 Identities=20% Similarity=0.306 Sum_probs=124.5
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEE-EEE--eCCEEEEEEecCCchhhHHhHHHHhcCCCEEEEEE
Q 030429 12 EMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMR-KVT--KGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVV 88 (177)
Q Consensus 12 ~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~--~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~ 88 (177)
.+||+++|.+|||||||++++.++.+...+.++.+.... ... ...+.+++||+||++++..++..+++.++++++|+
T Consensus 1 ~~ki~liG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~vlv~ 80 (168)
T cd04177 1 DYKIVVLGAGGVGKSALTVQFVQNVFIESYDPTIEDSYRKQVEIDGRQCDLEILDTAGTEQFTAMRELYIKSGQGFLLVY 80 (168)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheEEEEEEECCEEEEEEEEeCCCcccchhhhHHHHhhCCEEEEEE
Confidence 368999999999999999999988887776676653332 223 33478899999999999999999999999999999
Q ss_pred eCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccC--HHHHHHHhCcccccCCceeEEEeeecCCCChHHHH
Q 030429 89 DAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALS--KQALVDQLGLESITDREVCCYMISCKDSINIDAVI 166 (177)
Q Consensus 89 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~ 166 (177)
|++++++++....|...+.......+.|+++++||.|+.+... .++...... .....+++++||+++.|++++|
T Consensus 81 ~~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~----~~~~~~~~~~SA~~~~~i~~~f 156 (168)
T cd04177 81 SVTSEASLNELGELREQVLRIKDSDNVPMVLVGNKADLEDDRQVSREDGVSLSQ----QWGNVPFYETSARKRTNVDEVF 156 (168)
T ss_pred ECCCHHHHHHHHHHHHHHHHhhCCCCCCEEEEEEChhccccCccCHHHHHHHHH----HcCCceEEEeeCCCCCCHHHHH
Confidence 9999999999998888876644446799999999999865332 122111111 1122579999999999999999
Q ss_pred HHHHHHh
Q 030429 167 DWLIKHS 173 (177)
Q Consensus 167 ~~l~~~~ 173 (177)
+++...+
T Consensus 157 ~~i~~~~ 163 (168)
T cd04177 157 IDLVRQI 163 (168)
T ss_pred HHHHHHH
Confidence 9998765
|
RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu |
| >cd04118 Rab24 Rab24 subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.2e-30 Score=178.41 Aligned_cols=156 Identities=23% Similarity=0.329 Sum_probs=120.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCC-CCCCccceeEE--EEEeC--CEEEEEEecCCchhhHHhHHHHhcCCCEEEEE
Q 030429 13 MELSLIGLQNAGKTSLVNTIATGGYSE-DMIPTVGFNMR--KVTKG--NVTIKLWDLGGQRRFRTMWERYCRGVSAILYV 87 (177)
Q Consensus 13 ~~i~i~G~~~~GKSsli~~l~~~~~~~-~~~~t~~~~~~--~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v 87 (177)
+||+++|++|||||||+++++++.+.. .+.+|.+..+. .+..+ .+.+.+||+||++++......++.++|++++|
T Consensus 1 ~ki~vvG~~~vGKSsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~iilv 80 (193)
T cd04118 1 VKVVMLGKESVGKTSLVERYVHHRFLVGPYQNTIGAAFVAKRMVVGERVVTLGIWDTAGSERYEAMSRIYYRGAKAAIVC 80 (193)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCcCCcCcccceeeEEEEEEEEECCEEEEEEEEECCCchhhhhhhHhhcCCCCEEEEE
Confidence 589999999999999999999888764 46666664432 33433 36778999999999988888889999999999
Q ss_pred EeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccC------HHHHHHHhCcccccCCceeEEEeeecCCCC
Q 030429 88 VDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALS------KQALVDQLGLESITDREVCCYMISCKDSIN 161 (177)
Q Consensus 88 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 161 (177)
+|++++.+++....|+..+... ..+.|+++|+||+|+.+... ..+..+ +. .....+++++||++|.|
T Consensus 81 ~d~~~~~s~~~~~~~~~~i~~~--~~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~-~~----~~~~~~~~~~Sa~~~~g 153 (193)
T cd04118 81 YDLTDSSSFERAKFWVKELQNL--EEHCKIYLCGTKSDLIEQDRSLRQVDFHDVQD-FA----DEIKAQHFETSSKTGQN 153 (193)
T ss_pred EECCCHHHHHHHHHHHHHHHhc--CCCCCEEEEEEcccccccccccCccCHHHHHH-HH----HHcCCeEEEEeCCCCCC
Confidence 9999999999988888777553 23689999999999864321 111111 11 11234789999999999
Q ss_pred hHHHHHHHHHHhhh
Q 030429 162 IDAVIDWLIKHSKT 175 (177)
Q Consensus 162 i~~l~~~l~~~~~~ 175 (177)
++++|+++.+.+.+
T Consensus 154 v~~l~~~i~~~~~~ 167 (193)
T cd04118 154 VDELFQKVAEDFVS 167 (193)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999987754
|
Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita |
| >PLN03108 Rab family protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.2e-30 Score=179.53 Aligned_cols=160 Identities=19% Similarity=0.283 Sum_probs=126.3
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEE--EEEe--CCEEEEEEecCCchhhHHhHHHHhcCCCEEE
Q 030429 10 KQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMR--KVTK--GNVTIKLWDLGGQRRFRTMWERYCRGVSAIL 85 (177)
Q Consensus 10 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~--~~~~--~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i 85 (177)
...+||+++|++|||||||++++++..+...+.++.+.... .+.. ..+.+.+||++|++.+...+..++..+|+++
T Consensus 4 ~~~~kivivG~~gvGKStLi~~l~~~~~~~~~~~ti~~~~~~~~i~~~~~~i~l~l~Dt~G~~~~~~~~~~~~~~ad~~v 83 (210)
T PLN03108 4 AYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGAL 83 (210)
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCCEEE
Confidence 45689999999999999999999988887777777765433 2333 3467899999999999998899999999999
Q ss_pred EEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccc--CHHHHHHHhCcccccCCceeEEEeeecCCCChH
Q 030429 86 YVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEAL--SKQALVDQLGLESITDREVCCYMISCKDSINID 163 (177)
Q Consensus 86 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 163 (177)
+|+|+++++++..+..|+..+.... ....|+++|+||+|+.+.. ..++..+... ..+++++++||+++.|++
T Consensus 84 lv~D~~~~~s~~~l~~~~~~~~~~~-~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~e~Sa~~~~~v~ 157 (210)
T PLN03108 84 LVYDITRRETFNHLASWLEDARQHA-NANMTIMLIGNKCDLAHRRAVSTEEGEQFAK-----EHGLIFMEASAKTAQNVE 157 (210)
T ss_pred EEEECCcHHHHHHHHHHHHHHHHhc-CCCCcEEEEEECccCccccCCCHHHHHHHHH-----HcCCEEEEEeCCCCCCHH
Confidence 9999999999999988887765432 2578999999999986532 2222222221 123479999999999999
Q ss_pred HHHHHHHHHhhh
Q 030429 164 AVIDWLIKHSKT 175 (177)
Q Consensus 164 ~l~~~l~~~~~~ 175 (177)
++|+++.+.+.+
T Consensus 158 e~f~~l~~~~~~ 169 (210)
T PLN03108 158 EAFIKTAAKIYK 169 (210)
T ss_pred HHHHHHHHHHHH
Confidence 999999987654
|
|
| >cd04139 RalA_RalB RalA/RalB subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.1e-29 Score=170.41 Aligned_cols=158 Identities=22% Similarity=0.322 Sum_probs=125.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEE---EEeCCEEEEEEecCCchhhHHhHHHHhcCCCEEEEEEe
Q 030429 13 MELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRK---VTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVD 89 (177)
Q Consensus 13 ~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~---~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d 89 (177)
+||+++|++|||||||++++.+..+.....++....... .....+.+.+||+||+..+......+++.++++++|+|
T Consensus 1 ~ki~~~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d 80 (164)
T cd04139 1 YKVIVVGAGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEDVQLNILDTAGQEDYAAIRDNYHRSGEGFLLVFS 80 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCccccCCcchhhEEEEEEECCEEEEEEEEECCChhhhhHHHHHHhhcCCEEEEEEE
Confidence 589999999999999999999888777766665533322 22345789999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccc--cCHHHHHHHhCcccccCCceeEEEeeecCCCChHHHHH
Q 030429 90 AADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEA--LSKQALVDQLGLESITDREVCCYMISCKDSINIDAVID 167 (177)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~ 167 (177)
++++.++.....|+..+.......+.|+++|+||+|+.+. ....+..+.... .+.+++++||++|.|++++|+
T Consensus 81 ~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~D~~~~~~~~~~~~~~~~~~-----~~~~~~~~Sa~~~~gi~~l~~ 155 (164)
T cd04139 81 ITDMESFTATAEFREQILRVKDDDNVPLLLVGNKCDLEDKRQVSSEEAANLARQ-----WGVPYVETSAKTRQNVEKAFY 155 (164)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEccccccccccCHHHHHHHHHH-----hCCeEEEeeCCCCCCHHHHHH
Confidence 9999999999999888877655567999999999999762 122222221111 123799999999999999999
Q ss_pred HHHHHhhh
Q 030429 168 WLIKHSKT 175 (177)
Q Consensus 168 ~l~~~~~~ 175 (177)
.+.+.+.+
T Consensus 156 ~l~~~~~~ 163 (164)
T cd04139 156 DLVREIRQ 163 (164)
T ss_pred HHHHHHHh
Confidence 99988764
|
The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo |
| >smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.7e-30 Score=174.42 Aligned_cols=159 Identities=23% Similarity=0.276 Sum_probs=117.8
Q ss_pred EEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEE-EEEe--CCEEEEEEecCCchhhHHhHHHHhcCCCEEEEEEeCC
Q 030429 15 LSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMR-KVTK--GNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAA 91 (177)
Q Consensus 15 i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~--~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~ 91 (177)
|+++|++|||||||++++.++.+...+.++...... .+.. ..+.+.+|||||++.+......++.++|++++|||++
T Consensus 1 i~i~G~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~ 80 (174)
T smart00174 1 LVVVGDGAVGKTCLLISYTTNAFPEDYVPTVFENYSADVEVDGKPVELGLWDTAGQEDYDRLRPLSYPDTDVFLICFSVD 80 (174)
T ss_pred CEEECCCCCCHHHHHHHHHhCCCCCCCCCcEEeeeeEEEEECCEEEEEEEEECCCCcccchhchhhcCCCCEEEEEEECC
Confidence 589999999999999999998887776666553332 2323 3467999999999999888888999999999999999
Q ss_pred CCCCHHHHHH-HHHHHHcCCCCCCCcEEEEeeCCCcccccCH-HHHHHH--------hCccccc-CCceeEEEeeecCCC
Q 030429 92 DRDSVPIARS-ELHELLMKPSLSGIPLLVLGNKIDKSEALSK-QALVDQ--------LGLESIT-DREVCCYMISCKDSI 160 (177)
Q Consensus 92 ~~~~~~~~~~-~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~-~~~~~~--------~~~~~~~-~~~~~~~~~Sa~~~~ 160 (177)
++++++.+.. |+..+.... ++.|+++|+||+|+.+.... .++.+. ....... .....++++||++|.
T Consensus 81 ~~~s~~~~~~~~~~~i~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~ 158 (174)
T smart00174 81 SPASFENVKEKWYPEVKHFC--PNTPIILVGTKLDLREDKSTLRELSKQKQEPVTYEQGEALAKRIGAVKYLECSALTQE 158 (174)
T ss_pred CHHHHHHHHHHHHHHHHhhC--CCCCEEEEecChhhhhChhhhhhhhcccCCCccHHHHHHHHHHcCCcEEEEecCCCCC
Confidence 9999999864 666554432 47899999999998653211 000000 0000011 112378999999999
Q ss_pred ChHHHHHHHHHHhhh
Q 030429 161 NIDAVIDWLIKHSKT 175 (177)
Q Consensus 161 ~i~~l~~~l~~~~~~ 175 (177)
|++++|+.+.+.+.+
T Consensus 159 ~v~~lf~~l~~~~~~ 173 (174)
T smart00174 159 GVREVFEEAIRAALN 173 (174)
T ss_pred CHHHHHHHHHHHhcC
Confidence 999999999987643
|
Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms. |
| >PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases | Back alignment and domain information |
|---|
Probab=99.97 E-value=9.3e-30 Score=170.57 Aligned_cols=155 Identities=29% Similarity=0.488 Sum_probs=127.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEE--EEe--CCEEEEEEecCCchhhHHhHHHHhcCCCEEEEEEe
Q 030429 14 ELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRK--VTK--GNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVD 89 (177)
Q Consensus 14 ~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~--~~~--~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d 89 (177)
||+++|++|||||||+++|.++.+...+.+|.+..... +.. ..+.+++||++|++++......++.++|++++|||
T Consensus 1 Ki~vvG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ii~fd 80 (162)
T PF00071_consen 1 KIVVVGDSGVGKTSLINRLINGEFPENYIPTIGIDSYSKEVSIDGKPVNLEIWDTSGQERFDSLRDIFYRNSDAIIIVFD 80 (162)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSSTTSSSETTSSEEEEEEEEEETTEEEEEEEEEETTSGGGHHHHHHHHTTESEEEEEEE
T ss_pred CEEEECCCCCCHHHHHHHHHhhcccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 79999999999999999999999988888887655544 333 45789999999999999888889999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccc--CHHHHHHHhCcccccCCceeEEEeeecCCCChHHHHH
Q 030429 90 AADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEAL--SKQALVDQLGLESITDREVCCYMISCKDSINIDAVID 167 (177)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~ 167 (177)
+++++++..+..|+..+..... ...|+++++||.|+.+.. ..++..+.... . +.+++++||+++.|+.++|.
T Consensus 81 ~~~~~S~~~~~~~~~~i~~~~~-~~~~iivvg~K~D~~~~~~v~~~~~~~~~~~----~-~~~~~e~Sa~~~~~v~~~f~ 154 (162)
T PF00071_consen 81 VTDEESFENLKKWLEEIQKYKP-EDIPIIVVGNKSDLSDEREVSVEEAQEFAKE----L-GVPYFEVSAKNGENVKEIFQ 154 (162)
T ss_dssp TTBHHHHHTHHHHHHHHHHHST-TTSEEEEEEETTTGGGGSSSCHHHHHHHHHH----T-TSEEEEEBTTTTTTHHHHHH
T ss_pred cccccccccccccccccccccc-ccccceeeeccccccccccchhhHHHHHHHH----h-CCEEEEEECCCCCCHHHHHH
Confidence 9999999999999988866544 468999999999988632 22222222111 1 14799999999999999999
Q ss_pred HHHHHhh
Q 030429 168 WLIKHSK 174 (177)
Q Consensus 168 ~l~~~~~ 174 (177)
.+++.+.
T Consensus 155 ~~i~~i~ 161 (162)
T PF00071_consen 155 ELIRKIL 161 (162)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 9998874
|
This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A .... |
| >PLN03118 Rab family protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=6e-30 Score=178.44 Aligned_cols=161 Identities=22% Similarity=0.394 Sum_probs=122.5
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeE--EEEEeC--CEEEEEEecCCchhhHHhHHHHhcCCCEE
Q 030429 9 FKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNM--RKVTKG--NVTIKLWDLGGQRRFRTMWERYCRGVSAI 84 (177)
Q Consensus 9 ~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~--~~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~~ 84 (177)
....+||+++|++|||||||+++|.++.+. ...++.+... ..+..+ .+.+.+|||||++++...+..+++.+|++
T Consensus 11 ~~~~~kv~ivG~~~vGKTsli~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~ 89 (211)
T PLN03118 11 YDLSFKILLIGDSGVGKSSLLVSFISSSVE-DLAPTIGVDFKIKQLTVGGKRLKLTIWDTAGQERFRTLTSSYYRNAQGI 89 (211)
T ss_pred cCcceEEEEECcCCCCHHHHHHHHHhCCCC-CcCCCceeEEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhcCCEE
Confidence 445789999999999999999999987664 4455655443 233333 47889999999999999999999999999
Q ss_pred EEEEeCCCCCCHHHHHHHHHHHHcC-CCCCCCcEEEEeeCCCcccccC--HHHHHHHhCcccccCCceeEEEeeecCCCC
Q 030429 85 LYVVDAADRDSVPIARSELHELLMK-PSLSGIPLLVLGNKIDKSEALS--KQALVDQLGLESITDREVCCYMISCKDSIN 161 (177)
Q Consensus 85 i~v~d~~~~~~~~~~~~~~~~~~~~-~~~~~~~~iiv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 161 (177)
++|+|++++++++.+...|...... ......|+++|+||+|+..... .++..+... ....+++++||+++.|
T Consensus 90 vlv~D~~~~~sf~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~~~i~~~~~~~~~~-----~~~~~~~e~SAk~~~~ 164 (211)
T PLN03118 90 ILVYDVTRRETFTNLSDVWGKEVELYSTNQDCVKMLVGNKVDRESERDVSREEGMALAK-----EHGCLFLECSAKTREN 164 (211)
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccCHHHHHHHHH-----HcCCEEEEEeCCCCCC
Confidence 9999999999999997755544332 2234679999999999865422 222222111 1234799999999999
Q ss_pred hHHHHHHHHHHhhh
Q 030429 162 IDAVIDWLIKHSKT 175 (177)
Q Consensus 162 i~~l~~~l~~~~~~ 175 (177)
++++|++|.+.+.+
T Consensus 165 v~~l~~~l~~~~~~ 178 (211)
T PLN03118 165 VEQCFEELALKIME 178 (211)
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999988754
|
|
| >cd04135 Tc10 TC10 subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=9.7e-30 Score=172.39 Aligned_cols=160 Identities=20% Similarity=0.250 Sum_probs=117.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeE-EEEEeC--CEEEEEEecCCchhhHHhHHHHhcCCCEEEEEEe
Q 030429 13 MELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNM-RKVTKG--NVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVD 89 (177)
Q Consensus 13 ~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d 89 (177)
+||+++|++|+|||||++++.++.+...+.++..... ..+..+ .+.+.+||+||+..+......+++.+|++++|+|
T Consensus 1 ~ki~i~G~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~~ 80 (174)
T cd04135 1 LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICFS 80 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeEEEEEECCEEEEEEEEeCCCcccccccccccCCCCCEEEEEEE
Confidence 5899999999999999999998888766666654222 223333 4668899999999998888888999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccCHHHHHHHhCc----------ccccCCceeEEEeeecCC
Q 030429 90 AADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGL----------ESITDREVCCYMISCKDS 159 (177)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~Sa~~~ 159 (177)
++++.+++.....|...+... ..+.|+++|+||+|+.+............. ........+++++||++|
T Consensus 81 ~~~~~s~~~~~~~~~~~l~~~-~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~ 159 (174)
T cd04135 81 VVNPASFQNVKEEWVPELKEY-APNVPYLLVGTQIDLRDDPKTLARLNDMKEKPVTVEQGQKLAKEIGAHCYVECSALTQ 159 (174)
T ss_pred CCCHHHHHHHHHHHHHHHHhh-CCCCCEEEEeEchhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEecCCcC
Confidence 999999998865444333332 467999999999998653221111110000 000112236899999999
Q ss_pred CChHHHHHHHHHHh
Q 030429 160 INIDAVIDWLIKHS 173 (177)
Q Consensus 160 ~~i~~l~~~l~~~~ 173 (177)
.|++++|+.+++.+
T Consensus 160 ~gi~~~f~~~~~~~ 173 (174)
T cd04135 160 KGLKTVFDEAILAI 173 (174)
T ss_pred CCHHHHHHHHHHHh
Confidence 99999999998865
|
TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti |
| >cd04148 RGK RGK subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.5e-30 Score=179.95 Aligned_cols=155 Identities=19% Similarity=0.198 Sum_probs=116.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCC-CCCCCccc--eeEEEEE--eCCEEEEEEecCCchhhHHhHHHHhc-CCCEEEE
Q 030429 13 MELSLIGLQNAGKTSLVNTIATGGYS-EDMIPTVG--FNMRKVT--KGNVTIKLWDLGGQRRFRTMWERYCR-GVSAILY 86 (177)
Q Consensus 13 ~~i~i~G~~~~GKSsli~~l~~~~~~-~~~~~t~~--~~~~~~~--~~~~~~~~~D~~g~~~~~~~~~~~~~-~~d~~i~ 86 (177)
+||+++|++|||||||++++..+.+. ..+.++.+ .....+. .....+.+||+||++. .....++. ++|++++
T Consensus 1 ~KI~lvG~~gvGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~--~~~~~~~~~~ad~iil 78 (221)
T cd04148 1 YRVVMLGSPGVGKSSLASQFTSGEYDDHAYDASGDDDTYERTVSVDGEESTLVVIDHWEQEM--WTEDSCMQYQGDAFVV 78 (221)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCcCccCcCCCccccceEEEEEECCEEEEEEEEeCCCcch--HHHhHHhhcCCCEEEE
Confidence 58999999999999999999877775 55555553 2233333 3557899999999872 22334556 8999999
Q ss_pred EEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccCH--HHHHHHhCcccccCCceeEEEeeecCCCChHH
Q 030429 87 VVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSK--QALVDQLGLESITDREVCCYMISCKDSINIDA 164 (177)
Q Consensus 87 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 164 (177)
|||++++.+++....|+..+.......+.|+++|+||+|+.+.... ++. +.+. ....++++++||+++.|+++
T Consensus 79 V~d~td~~S~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~-~~~a----~~~~~~~~e~SA~~~~gv~~ 153 (221)
T cd04148 79 VYSVTDRSSFERASELRIQLRRNRQLEDRPIILVGNKSDLARSREVSVQEG-RACA----VVFDCKFIETSAGLQHNVDE 153 (221)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhccccceecHHHH-HHHH----HHcCCeEEEecCCCCCCHHH
Confidence 9999999999999999888866544457999999999998654321 111 1111 11234789999999999999
Q ss_pred HHHHHHHHhh
Q 030429 165 VIDWLIKHSK 174 (177)
Q Consensus 165 l~~~l~~~~~ 174 (177)
+|+++.+.+.
T Consensus 154 l~~~l~~~~~ 163 (221)
T cd04148 154 LLEGIVRQIR 163 (221)
T ss_pred HHHHHHHHHH
Confidence 9999999875
|
The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra |
| >cd04147 Ras_dva Ras-dva subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.8e-29 Score=174.46 Aligned_cols=157 Identities=22% Similarity=0.290 Sum_probs=123.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccc-eeEEEEEeCC--EEEEEEecCCchhhHHhHHHHhcCCCEEEEEEeC
Q 030429 14 ELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVG-FNMRKVTKGN--VTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDA 90 (177)
Q Consensus 14 ~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~-~~~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~ 90 (177)
||+++|.+|||||||+++++++.+...+.++.. .....+..++ +.+++||+||+..+......++.++|++++|+|+
T Consensus 1 kv~vvG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~vilv~d~ 80 (198)
T cd04147 1 RLVFMGAAGVGKTALIQRFLYDTFEPKYRRTVEEMHRKEYEVGGVSLTLDILDTSGSYSFPAMRKLSIQNSDAFALVYAV 80 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCccCCCchhhheeEEEEECCEEEEEEEEECCCchhhhHHHHHHhhcCCEEEEEEEC
Confidence 689999999999999999998888776666553 3333344444 7899999999999988888899999999999999
Q ss_pred CCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccC---HHHHHHHhCcccccCCceeEEEeeecCCCChHHHHH
Q 030429 91 ADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALS---KQALVDQLGLESITDREVCCYMISCKDSINIDAVID 167 (177)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~ 167 (177)
+++.+++....|+..+.......++|+++|+||+|+.+... .+...+... .....+++++||++|.|++++|+
T Consensus 81 ~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~~v~~~~~~~~~~----~~~~~~~~~~Sa~~g~gv~~l~~ 156 (198)
T cd04147 81 DDPESFEEVERLREEILEVKEDKFVPIVVVGNKADSLEEERQVPAKDALSTVE----LDWNCGFVETSAKDNENVLEVFK 156 (198)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEccccccccccccHHHHHHHHH----hhcCCcEEEecCCCCCCHHHHHH
Confidence 99999999999888887765556799999999999865321 112111111 11224689999999999999999
Q ss_pred HHHHHhh
Q 030429 168 WLIKHSK 174 (177)
Q Consensus 168 ~l~~~~~ 174 (177)
++.+.+.
T Consensus 157 ~l~~~~~ 163 (198)
T cd04147 157 ELLRQAN 163 (198)
T ss_pred HHHHHhh
Confidence 9998764
|
Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. |
| >cd04146 RERG_RasL11_like RERG/RasL11-like subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.4e-30 Score=173.95 Aligned_cols=156 Identities=19% Similarity=0.247 Sum_probs=116.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeE-EE--EEeCCEEEEEEecCCchh-hHHhHHHHhcCCCEEEEEEe
Q 030429 14 ELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNM-RK--VTKGNVTIKLWDLGGQRR-FRTMWERYCRGVSAILYVVD 89 (177)
Q Consensus 14 ~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~--~~~~~~~~~~~D~~g~~~-~~~~~~~~~~~~d~~i~v~d 89 (177)
||+++|++|||||||+++++++.+...+.++..... .. ++...+.+++||+||+.. +......+++.+|++++|+|
T Consensus 1 ki~vvG~~~~GKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~v~d 80 (165)
T cd04146 1 KIAVLGASGVGKSALVVRFLTKRFIGEYDPNLESLYSRQVTIDGEQVSLEILDTAGQQQADTEQLERSIRWADGFVLVYS 80 (165)
T ss_pred CEEEECCCCCcHHHHHHHHHhCccccccCCChHHhceEEEEECCEEEEEEEEECCCCcccccchHHHHHHhCCEEEEEEE
Confidence 589999999999999999998777666666553222 22 333456789999999885 34456678899999999999
Q ss_pred CCCCCCHHHHHHHHHHHHcCCC-CCCCcEEEEeeCCCccccc--CHHHHHHHhCcccccCCceeEEEeeecCC-CChHHH
Q 030429 90 AADRDSVPIARSELHELLMKPS-LSGIPLLVLGNKIDKSEAL--SKQALVDQLGLESITDREVCCYMISCKDS-INIDAV 165 (177)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~iiv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~-~~i~~l 165 (177)
++++.+++.+..|+..+..... ..+.|+++|+||+|+.+.. ..++..+... ..+.+++++||++| .|++++
T Consensus 81 ~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~-----~~~~~~~e~Sa~~~~~~v~~~ 155 (165)
T cd04146 81 ITDRSSFDEISQLKQLIREIKKRDREIPVILVGNKADLLHYRQVSTEEGEKLAS-----ELGCLFFEVSAAEDYDGVHSV 155 (165)
T ss_pred CCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCchHHhCccCHHHHHHHHH-----HcCCEEEEeCCCCCchhHHHH
Confidence 9999999999888877655432 3579999999999986432 1222211111 11247999999999 599999
Q ss_pred HHHHHHHhh
Q 030429 166 IDWLIKHSK 174 (177)
Q Consensus 166 ~~~l~~~~~ 174 (177)
|+.+.+.+.
T Consensus 156 f~~l~~~~~ 164 (165)
T cd04146 156 FHELCREVR 164 (165)
T ss_pred HHHHHHHHh
Confidence 999998765
|
RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu |
| >KOG0071 consensus GTP-binding ADP-ribosylation factor Arf6 (dArf3) [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.8e-29 Score=157.00 Aligned_cols=169 Identities=36% Similarity=0.640 Sum_probs=156.5
Q ss_pred cccccceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEeCCEEEEEEecCCchhhHHhHHHHhcCCCEEE
Q 030429 6 SLFFKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAIL 85 (177)
Q Consensus 6 ~~~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i 85 (177)
.+...++++|+.+|..++||||++..++-+ -.....+|.++.+..+.++++.|++||++|+++.+..|+.|+.+..++|
T Consensus 11 k~f~~KE~~ilmlGLd~aGKTtiLyKLkl~-~~~~~ipTvGFnvetVtykN~kfNvwdvGGqd~iRplWrhYy~gtqglI 89 (180)
T KOG0071|consen 11 KIFGNKEMRILMLGLDAAGKTTILYKLKLG-QSVTTIPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLI 89 (180)
T ss_pred HHhCcccceEEEEecccCCceehhhHHhcC-CCcccccccceeEEEEEeeeeEEeeeeccCchhhhHHHHhhccCCceEE
Confidence 456778999999999999999999999843 3445668999999999999999999999999999999999999999999
Q ss_pred EEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccCHHHHHHHhCcccccCCceeEEEeeecCCCChHHH
Q 030429 86 YVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCKDSINIDAV 165 (177)
Q Consensus 86 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l 165 (177)
+|+|.++.+..++.+..+..++........|+++..||.|++....++++...+++.....+.+.+.++|+.+|.|+.|-
T Consensus 90 FV~Dsa~~dr~eeAr~ELh~ii~~~em~~~~~LvlANkQDlp~A~~pqei~d~leLe~~r~~~W~vqp~~a~~gdgL~eg 169 (180)
T KOG0071|consen 90 FVVDSADRDRIEEARNELHRIINDREMRDAIILILANKQDLPDAMKPQEIQDKLELERIRDRNWYVQPSCALSGDGLKEG 169 (180)
T ss_pred EEEeccchhhHHHHHHHHHHHhCCHhhhcceEEEEecCcccccccCHHHHHHHhccccccCCccEeeccccccchhHHHH
Confidence 99999999999999999999999988888999999999999999999999999999888889999999999999999999
Q ss_pred HHHHHHHhhh
Q 030429 166 IDWLIKHSKT 175 (177)
Q Consensus 166 ~~~l~~~~~~ 175 (177)
|.||...++.
T Consensus 170 lswlsnn~~~ 179 (180)
T KOG0071|consen 170 LSWLSNNLKE 179 (180)
T ss_pred HHHHHhhccC
Confidence 9999988764
|
|
| >cd04123 Rab21 Rab21 subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=8.4e-30 Score=170.54 Aligned_cols=155 Identities=25% Similarity=0.353 Sum_probs=120.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeE--EEEE--eCCEEEEEEecCCchhhHHhHHHHhcCCCEEEEEE
Q 030429 13 MELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNM--RKVT--KGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVV 88 (177)
Q Consensus 13 ~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~--~~~~--~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~ 88 (177)
+||+++|++|||||||+++++++.+.....++..... ..+. ...+.+.+||+||+..+...+..+++.+|++++|+
T Consensus 1 ~ki~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 80 (162)
T cd04123 1 FKVVLLGEGRVGKTSLVLRYVENKFNEKHESTTQASFFQKTVNIGGKRIDLAIWDTAGQERYHALGPIYYRDADGAILVY 80 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCccceeEEEEEEEECCEEEEEEEEECCchHHHHHhhHHHhccCCEEEEEE
Confidence 5899999999999999999998877665555543332 2233 23467999999999999998888999999999999
Q ss_pred eCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccC--HHHHHHHhCcccccCCceeEEEeeecCCCChHHHH
Q 030429 89 DAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALS--KQALVDQLGLESITDREVCCYMISCKDSINIDAVI 166 (177)
Q Consensus 89 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~ 166 (177)
|+++++++.....|+..+..... .+.|+++|+||+|+..... .++..+... ..+.+++++|++++.|+++++
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~-~~~piiiv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~s~~~~~gi~~~~ 154 (162)
T cd04123 81 DITDADSFQKVKKWIKELKQMRG-NNISLVIVGNKIDLERQRVVSKSEAEEYAK-----SVGAKHFETSAKTGKGIEELF 154 (162)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCC-CCCeEEEEEECcccccccCCCHHHHHHHHH-----HcCCEEEEEeCCCCCCHHHHH
Confidence 99999999999888877755533 3789999999999875322 222222211 123468999999999999999
Q ss_pred HHHHHHh
Q 030429 167 DWLIKHS 173 (177)
Q Consensus 167 ~~l~~~~ 173 (177)
+++.+.+
T Consensus 155 ~~l~~~~ 161 (162)
T cd04123 155 LSLAKRM 161 (162)
T ss_pred HHHHHHh
Confidence 9998865
|
The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site |
| >cd04114 Rab30 Rab30 subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.4e-29 Score=168.96 Aligned_cols=159 Identities=24% Similarity=0.364 Sum_probs=122.7
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeE--EEEEeCC--EEEEEEecCCchhhHHhHHHHhcCCCEEE
Q 030429 10 KQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNM--RKVTKGN--VTIKLWDLGGQRRFRTMWERYCRGVSAIL 85 (177)
Q Consensus 10 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~--~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~~i 85 (177)
+...+|+++|++|||||||++++.++.+.....++.+... ..+...+ +.+.+||+||+..+......++..+|+++
T Consensus 5 ~~~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i 84 (169)
T cd04114 5 DFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEIKGEKIKLQIWDTAGQERFRSITQSYYRSANALI 84 (169)
T ss_pred CceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEE
Confidence 4568999999999999999999998877776666665333 2334444 67899999999999988889999999999
Q ss_pred EEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccCH-HHHHHHhCcccccCCceeEEEeeecCCCChHH
Q 030429 86 YVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSK-QALVDQLGLESITDREVCCYMISCKDSINIDA 164 (177)
Q Consensus 86 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 164 (177)
+|+|++++.++..+..|+..+... ...+.|+++|+||+|+.+..+. .+..+.+.. ....+++++||++|.|+++
T Consensus 85 ~v~d~~~~~s~~~~~~~~~~l~~~-~~~~~~~i~v~NK~D~~~~~~i~~~~~~~~~~----~~~~~~~~~Sa~~~~gv~~ 159 (169)
T cd04114 85 LTYDITCEESFRCLPEWLREIEQY-ANNKVITILVGNKIDLAERREVSQQRAEEFSD----AQDMYYLETSAKESDNVEK 159 (169)
T ss_pred EEEECcCHHHHHHHHHHHHHHHHh-CCCCCeEEEEEECcccccccccCHHHHHHHHH----HcCCeEEEeeCCCCCCHHH
Confidence 999999998998888887766433 2246899999999998754322 122222211 1124789999999999999
Q ss_pred HHHHHHHHh
Q 030429 165 VIDWLIKHS 173 (177)
Q Consensus 165 l~~~l~~~~ 173 (177)
+|+.|.+.+
T Consensus 160 l~~~i~~~~ 168 (169)
T cd04114 160 LFLDLACRL 168 (169)
T ss_pred HHHHHHHHh
Confidence 999998764
|
Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. |
| >KOG0088 consensus GTPase Rab21, small G protein superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.1e-31 Score=167.53 Aligned_cols=164 Identities=27% Similarity=0.357 Sum_probs=131.1
Q ss_pred cccceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccc--eeEEEE--EeCCEEEEEEecCCchhhHHhHHHHhcCCCE
Q 030429 8 FFKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVG--FNMRKV--TKGNVTIKLWDLGGQRRFRTMWERYCRGVSA 83 (177)
Q Consensus 8 ~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~--~~~~~~--~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ 83 (177)
....++|++++|+.-+|||||+-+++...|.....+|.. +....+ .....++++|||+|+++|+.+-+-|++++++
T Consensus 9 g~s~~FK~VLLGEGCVGKtSLVLRy~EnkFn~kHlsTlQASF~~kk~n~ed~ra~L~IWDTAGQErfHALGPIYYRgSnG 88 (218)
T KOG0088|consen 9 GKSFKFKIVLLGEGCVGKTSLVLRYVENKFNCKHLSTLQASFQNKKVNVEDCRADLHIWDTAGQERFHALGPIYYRGSNG 88 (218)
T ss_pred CCceeeEEEEEcCCccchhHHHHHHHHhhcchhhHHHHHHHHhhcccccccceeeeeeeeccchHhhhccCceEEeCCCc
Confidence 455679999999999999999999999999888887665 333333 3455789999999999999999999999999
Q ss_pred EEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccCHHHHHHHhCcccccCCceeEEEeeecCCCChH
Q 030429 84 ILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCKDSINID 163 (177)
Q Consensus 84 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 163 (177)
+++|||++|+++|+..+.|..++..... ..+-+++|+||+|+.++... ..+-........++.++++||+++.||.
T Consensus 89 alLVyDITDrdSFqKVKnWV~Elr~mlG-nei~l~IVGNKiDLEeeR~V---t~qeAe~YAesvGA~y~eTSAk~N~Gi~ 164 (218)
T KOG0088|consen 89 ALLVYDITDRDSFQKVKNWVLELRTMLG-NEIELLIVGNKIDLEEERQV---TRQEAEAYAESVGALYMETSAKDNVGIS 164 (218)
T ss_pred eEEEEeccchHHHHHHHHHHHHHHHHhC-CeeEEEEecCcccHHHhhhh---hHHHHHHHHHhhchhheecccccccCHH
Confidence 9999999999999999999999966543 45788999999999764322 1111111122334469999999999999
Q ss_pred HHHHHHHHHhhh
Q 030429 164 AVIDWLIKHSKT 175 (177)
Q Consensus 164 ~l~~~l~~~~~~ 175 (177)
++|+.|.....+
T Consensus 165 elFe~Lt~~MiE 176 (218)
T KOG0088|consen 165 ELFESLTAKMIE 176 (218)
T ss_pred HHHHHHHHHHHH
Confidence 999999886543
|
|
| >cd01870 RhoA_like RhoA-like subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.6e-29 Score=170.40 Aligned_cols=159 Identities=19% Similarity=0.256 Sum_probs=117.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEE-EEEe--CCEEEEEEecCCchhhHHhHHHHhcCCCEEEEEEe
Q 030429 13 MELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMR-KVTK--GNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVD 89 (177)
Q Consensus 13 ~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~--~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d 89 (177)
.||+++|++|||||||++++.++.+...+.++...... .+.. ..+.+.+|||||++.+......++.++|++++|+|
T Consensus 2 ~ki~iiG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~~ 81 (175)
T cd01870 2 KKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFS 81 (175)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccceEEEEEECCEEEEEEEEeCCCchhhhhccccccCCCCEEEEEEE
Confidence 58999999999999999999998887777776654332 2333 44688999999999988877778899999999999
Q ss_pred CCCCCCHHHHHH-HHHHHHcCCCCCCCcEEEEeeCCCcccccCHHHHHHHhCcc----------cccCCceeEEEeeecC
Q 030429 90 AADRDSVPIARS-ELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLE----------SITDREVCCYMISCKD 158 (177)
Q Consensus 90 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~Sa~~ 158 (177)
++++++++.... |...+... ..+.|+++|+||+|+.+.....+........ .......++++|||++
T Consensus 82 ~~~~~s~~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~~~~~~~i~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~ 159 (175)
T cd01870 82 IDSPDSLENIPEKWTPEVKHF--CPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANKIGAFGYMECSAKT 159 (175)
T ss_pred CCCHHHHHHHHHHHHHHHHhh--CCCCCEEEEeeChhcccChhhhhhhhhccCCCccHHHHHHHHHHcCCcEEEEecccc
Confidence 999999988865 44444332 2478999999999986542211111110000 0011234799999999
Q ss_pred CCChHHHHHHHHHHh
Q 030429 159 SINIDAVIDWLIKHS 173 (177)
Q Consensus 159 ~~~i~~l~~~l~~~~ 173 (177)
|.|++++|++|.+.+
T Consensus 160 ~~~v~~lf~~l~~~~ 174 (175)
T cd01870 160 KEGVREVFEMATRAA 174 (175)
T ss_pred CcCHHHHHHHHHHHh
Confidence 999999999998765
|
The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl |
| >cd04130 Wrch_1 Wrch-1 subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.5e-30 Score=173.93 Aligned_cols=153 Identities=21% Similarity=0.250 Sum_probs=114.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeE-EEEEe--CCEEEEEEecCCchhhHHhHHHHhcCCCEEEEEEe
Q 030429 13 MELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNM-RKVTK--GNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVD 89 (177)
Q Consensus 13 ~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~--~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d 89 (177)
+|++++|++|||||||+.++.++.+...+.+|..... ..+.. ..+.+.+||+||+.++...+..+++++|++++|||
T Consensus 1 ~k~~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~a~~~i~v~d 80 (173)
T cd04130 1 LKCVLVGDGAVGKTSLIVSYTTNGYPTEYVPTAFDNFSVVVLVDGKPVRLQLCDTAGQDEFDKLRPLCYPDTDVFLLCFS 80 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeeEEEEECCEEEEEEEEECCCChhhccccccccCCCcEEEEEEE
Confidence 5899999999999999999998888877777653211 12233 34788999999999998888888999999999999
Q ss_pred CCCCCCHHHHH-HHHHHHHcCCCCCCCcEEEEeeCCCcccccC--------------HHHHHHHhCcccccCCceeEEEe
Q 030429 90 AADRDSVPIAR-SELHELLMKPSLSGIPLLVLGNKIDKSEALS--------------KQALVDQLGLESITDREVCCYMI 154 (177)
Q Consensus 90 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~ 154 (177)
++++++++.+. .|+..+... ..+.|+++|+||+|+.+... .++..+ +.. ......++++
T Consensus 81 ~~~~~sf~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~-~a~---~~~~~~~~e~ 154 (173)
T cd04130 81 VVNPSSFQNISEKWIPEIRKH--NPKAPIILVGTQADLRTDVNVLIQLARYGEKPVSQSRAKA-LAE---KIGACEYIEC 154 (173)
T ss_pred CCCHHHHHHHHHHHHHHHHhh--CCCCCEEEEeeChhhccChhHHHHHhhcCCCCcCHHHHHH-HHH---HhCCCeEEEE
Confidence 99999999885 466555432 24689999999999864321 111111 110 1112379999
Q ss_pred eecCCCChHHHHHHHHH
Q 030429 155 SCKDSINIDAVIDWLIK 171 (177)
Q Consensus 155 Sa~~~~~i~~l~~~l~~ 171 (177)
||++|.|++++|+.+.-
T Consensus 155 Sa~~~~~v~~lf~~~~~ 171 (173)
T cd04130 155 SALTQKNLKEVFDTAIL 171 (173)
T ss_pred eCCCCCCHHHHHHHHHh
Confidence 99999999999998764
|
Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus, |
| >KOG0091 consensus GTPase Rab39, small G protein superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.1e-29 Score=162.75 Aligned_cols=162 Identities=24% Similarity=0.367 Sum_probs=132.0
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEE----EE-eCCEEEEEEecCCchhhHHhHHHHhcCCCEE
Q 030429 10 KQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRK----VT-KGNVTIKLWDLGGQRRFRTMWERYCRGVSAI 84 (177)
Q Consensus 10 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~----~~-~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~ 84 (177)
...++++++|+.-+|||||++.+.++.+..-..||.+.++.. +. ...+.+++|||+|+++|++....|++++-++
T Consensus 6 ~yqfrlivigdstvgkssll~~ft~gkfaelsdptvgvdffarlie~~pg~riklqlwdtagqerfrsitksyyrnsvgv 85 (213)
T KOG0091|consen 6 HYQFRLIVIGDSTVGKSSLLRYFTEGKFAELSDPTVGVDFFARLIELRPGYRIKLQLWDTAGQERFRSITKSYYRNSVGV 85 (213)
T ss_pred EEEEEEEEEcCCcccHHHHHHHHhcCcccccCCCccchHHHHHHHhcCCCcEEEEEEeeccchHHHHHHHHHHhhcccce
Confidence 456899999999999999999999999999999999876553 22 2347899999999999999999999999999
Q ss_pred EEEEeCCCCCCHHHHHHHHHHHHcCCCCCCC-cEEEEeeCCCcccccCHHHHHHHhCcccccCCceeEEEeeecCCCChH
Q 030429 85 LYVVDAADRDSVPIARSELHELLMKPSLSGI-PLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCKDSINID 163 (177)
Q Consensus 85 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 163 (177)
++|||+++.++|+....|+.+.......+.+ -+++|++|+|+...... ..+-+.......++.|+++||++|.|++
T Consensus 86 llvyditnr~sfehv~~w~~ea~m~~q~P~k~VFlLVGhKsDL~SqRqV---t~EEaEklAa~hgM~FVETSak~g~NVe 162 (213)
T KOG0091|consen 86 LLVYDITNRESFEHVENWVKEAAMATQGPDKVVFLLVGHKSDLQSQRQV---TAEEAEKLAASHGMAFVETSAKNGCNVE 162 (213)
T ss_pred EEEEeccchhhHHHHHHHHHHHHHhcCCCCeeEEEEeccccchhhhccc---cHHHHHHHHHhcCceEEEecccCCCcHH
Confidence 9999999999999999999998777665554 46888999999754221 1111111222334579999999999999
Q ss_pred HHHHHHHHHhh
Q 030429 164 AVIDWLIKHSK 174 (177)
Q Consensus 164 ~l~~~l~~~~~ 174 (177)
+.|..|.+.+.
T Consensus 163 EAF~mlaqeIf 173 (213)
T KOG0091|consen 163 EAFDMLAQEIF 173 (213)
T ss_pred HHHHHHHHHHH
Confidence 99999988764
|
|
| >cd00154 Rab Rab family | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.5e-28 Score=163.60 Aligned_cols=152 Identities=28% Similarity=0.472 Sum_probs=122.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEE--e--CCEEEEEEecCCchhhHHhHHHHhcCCCEEEEEE
Q 030429 13 MELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVT--K--GNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVV 88 (177)
Q Consensus 13 ~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~--~--~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~ 88 (177)
+||+++|++|||||||++++.+..+.....++.+....... . ....+.+||+||+..+...+..+++++|++++|+
T Consensus 1 ~~i~~~G~~~~GKStl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ii~v~ 80 (159)
T cd00154 1 FKIVLIGDSGVGKTSLLLRFVDGKFDENYKSTIGVDFKSKTIEIDGKTVKLQIWDTAGQERFRSITPSYYRGAHGAILVY 80 (159)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCccCCceeeeeEEEEEEECCEEEEEEEEecCChHHHHHHHHHHhcCCCEEEEEE
Confidence 58999999999999999999988888777777776555433 2 3588999999999999998999999999999999
Q ss_pred eCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcc--cccCHHHHHHHhCcccccCCceeEEEeeecCCCChHHHH
Q 030429 89 DAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKS--EALSKQALVDQLGLESITDREVCCYMISCKDSINIDAVI 166 (177)
Q Consensus 89 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~ 166 (177)
|+++++++.....|+..+..... ...|+++++||+|+. .....++..+.... ...+++++||+++.|+++++
T Consensus 81 d~~~~~~~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~-----~~~~~~~~sa~~~~~i~~~~ 154 (159)
T cd00154 81 DITNRESFENLDKWLKELKEYAP-ENIPIILVGNKIDLEDQRQVSTEEAQQFAKE-----NGLLFFETSAKTGENVEELF 154 (159)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCC-CCCcEEEEEEcccccccccccHHHHHHHHHH-----cCCeEEEEecCCCCCHHHHH
Confidence 99999899999988887766532 468999999999996 22223333322221 34579999999999999999
Q ss_pred HHHH
Q 030429 167 DWLI 170 (177)
Q Consensus 167 ~~l~ 170 (177)
++|.
T Consensus 155 ~~i~ 158 (159)
T cd00154 155 QSLA 158 (159)
T ss_pred HHHh
Confidence 9986
|
Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di |
| >cd01873 RhoBTB RhoBTB subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.1e-29 Score=174.67 Aligned_cols=157 Identities=19% Similarity=0.222 Sum_probs=109.9
Q ss_pred eeEEEEEcCCCCCHHHHHH-HHhcCC-----CCCCCCCccce-eEE------------EEEeCCEEEEEEecCCchhhHH
Q 030429 12 EMELSLIGLQNAGKTSLVN-TIATGG-----YSEDMIPTVGF-NMR------------KVTKGNVTIKLWDLGGQRRFRT 72 (177)
Q Consensus 12 ~~~i~i~G~~~~GKSsli~-~l~~~~-----~~~~~~~t~~~-~~~------------~~~~~~~~~~~~D~~g~~~~~~ 72 (177)
.+||+++|.+|||||||+. ++.++. +...+.+|.+. ... .+....+.+++|||+|++..
T Consensus 2 ~~Kiv~vG~~~vGKTsLi~~~~~~~~~~~~~f~~~~~pTi~~~~~~~~~~~~~~~~~~~~~~~~v~l~iwDTaG~~~~-- 79 (195)
T cd01873 2 TIKCVVVGDNAVGKTRLICARACNKTLTQYQLLATHVPTVWAIDQYRVCQEVLERSRDVVDGVSVSLRLWDTFGDHDK-- 79 (195)
T ss_pred ceEEEEECCCCcCHHHHHHHHHhCCCcccccCccccCCceecccceeEEeeeccccceeeCCEEEEEEEEeCCCChhh--
Confidence 4799999999999999995 665443 34455566641 111 23344689999999998753
Q ss_pred hHHHHhcCCCEEEEEEeCCCCCCHHHHHH-HHHHHHcCCCCCCCcEEEEeeCCCcccccC----------------HHHH
Q 030429 73 MWERYCRGVSAILYVVDAADRDSVPIARS-ELHELLMKPSLSGIPLLVLGNKIDKSEALS----------------KQAL 135 (177)
Q Consensus 73 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~----------------~~~~ 135 (177)
....+++++|++++|||++++.+++++.. |+..+.... .+.|+++|+||+|+.+... ...+
T Consensus 80 ~~~~~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~~--~~~piilvgNK~DL~~~~~~~~~~~~~~~~~~~~~~~~V 157 (195)
T cd01873 80 DRRFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFC--PRVPVILVGCKLDLRYADLDEVNRARRPLARPIKNADIL 157 (195)
T ss_pred hhcccCCCCCEEEEEEECCChhHHHHHHHHHHHHHHHhC--CCCCEEEEEEchhccccccchhhhcccccccccccCCcc
Confidence 34567899999999999999999999974 666654432 4689999999999864200 0000
Q ss_pred HHHhCcccccCCceeEEEeeecCCCChHHHHHHHHHH
Q 030429 136 VDQLGLESITDREVCCYMISCKDSINIDAVIDWLIKH 172 (177)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~ 172 (177)
....+.......+++|++|||++|.|++++|+.++++
T Consensus 158 ~~~e~~~~a~~~~~~~~E~SAkt~~~V~e~F~~~~~~ 194 (195)
T cd01873 158 PPETGRAVAKELGIPYYETSVVTQFGVKDVFDNAIRA 194 (195)
T ss_pred CHHHHHHHHHHhCCEEEEcCCCCCCCHHHHHHHHHHh
Confidence 1111111112233579999999999999999999875
|
Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature. |
| >cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.4e-28 Score=167.61 Aligned_cols=159 Identities=17% Similarity=0.330 Sum_probs=125.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCcccee-EEEEEeC--CEEEEEEecCCchhhHHhHHHHhcCCCEEEEEEe
Q 030429 13 MELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFN-MRKVTKG--NVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVD 89 (177)
Q Consensus 13 ~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~-~~~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d 89 (177)
.||+++|.+|||||||++++.++.+.....++.... ......+ .+.+++||+||+.++...+..++..++++++|+|
T Consensus 2 ~kv~l~G~~g~GKTtl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d 81 (180)
T cd04137 2 RKIAVLGSRSVGKSSLTVQFVEGHFVESYYPTIENTFSKIIRYKGQDYHLEIVDTAGQDEYSILPQKYSIGIHGYILVYS 81 (180)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCccccCcchhhhEEEEEEECCEEEEEEEEECCChHhhHHHHHHHHhhCCEEEEEEE
Confidence 589999999999999999999888776666665432 2333333 4678999999999999888889999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccC--HHHHHHHhCcccccCCceeEEEeeecCCCChHHHHH
Q 030429 90 AADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALS--KQALVDQLGLESITDREVCCYMISCKDSINIDAVID 167 (177)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~ 167 (177)
.++..+++....++..+.......+.|+++|+||+|+..... .++...... ....+++++||+++.|++++++
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~gv~~l~~ 156 (180)
T cd04137 82 VTSRKSFEVVKVIYDKILDMLGKESVPIVLVGNKSDLHTQRQVSTEEGKELAE-----SWGAAFLESSARENENVEEAFE 156 (180)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEchhhhhcCccCHHHHHHHHH-----HcCCeEEEEeCCCCCCHHHHHH
Confidence 999999999999999887765556789999999999864322 112111111 1124789999999999999999
Q ss_pred HHHHHhhhc
Q 030429 168 WLIKHSKTA 176 (177)
Q Consensus 168 ~l~~~~~~~ 176 (177)
++.+.+.+.
T Consensus 157 ~l~~~~~~~ 165 (180)
T cd04137 157 LLIEEIEKV 165 (180)
T ss_pred HHHHHHHHh
Confidence 999887653
|
Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le |
| >cd00876 Ras Ras family | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.6e-28 Score=164.04 Aligned_cols=155 Identities=25% Similarity=0.356 Sum_probs=122.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEE-EEEeC--CEEEEEEecCCchhhHHhHHHHhcCCCEEEEEEeC
Q 030429 14 ELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMR-KVTKG--NVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDA 90 (177)
Q Consensus 14 ~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~ 90 (177)
||+++|++|||||||++++.+..+.....++.+.... .+..+ .+.+++||+||+..+......+++.+|++++|+|+
T Consensus 1 ki~i~G~~~~GKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~ 80 (160)
T cd00876 1 KVVVLGAGGVGKSAITIQFVKGTFVEEYDPTIEDSYRKTIVVDGETYTLDILDTAGQEEFSAMRDLYIRQGDGFILVYSI 80 (160)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCcCcCCChhHeEEEEEEECCEEEEEEEEECCChHHHHHHHHHHHhcCCEEEEEEEC
Confidence 6899999999999999999988777776666552222 23344 47899999999999999888999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccc--CHHHHHHHhCcccccCCceeEEEeeecCCCChHHHHHH
Q 030429 91 ADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEAL--SKQALVDQLGLESITDREVCCYMISCKDSINIDAVIDW 168 (177)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~ 168 (177)
++++++.+...++..+.........|+++|+||+|+.+.. ..++..+..... ..+++++|++++.|+++++++
T Consensus 81 ~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~-----~~~~~~~S~~~~~~i~~l~~~ 155 (160)
T cd00876 81 TDRESFEEIKGYREQILRVKDDEDIPIVLVGNKCDLENERQVSKEEGKALAKEW-----GCPFIETSAKDNINIDEVFKL 155 (160)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCcccccceecHHHHHHHHHHc-----CCcEEEeccCCCCCHHHHHHH
Confidence 9999999999999888776555679999999999987632 122222222111 147999999999999999999
Q ss_pred HHHHh
Q 030429 169 LIKHS 173 (177)
Q Consensus 169 l~~~~ 173 (177)
|.+.+
T Consensus 156 l~~~i 160 (160)
T cd00876 156 LVREI 160 (160)
T ss_pred HHhhC
Confidence 98753
|
The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m |
| >cd00157 Rho Rho (Ras homology) family | Back alignment and domain information |
|---|
Probab=99.96 E-value=8.9e-29 Score=167.11 Aligned_cols=158 Identities=18% Similarity=0.280 Sum_probs=114.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEE---EEEeCCEEEEEEecCCchhhHHhHHHHhcCCCEEEEEEe
Q 030429 13 MELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMR---KVTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVD 89 (177)
Q Consensus 13 ~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~---~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d 89 (177)
+||+++|++|||||||+++|.++.+...+.++...... ......+.+++||+||+..+.......++.+|++++|+|
T Consensus 1 iki~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d 80 (171)
T cd00157 1 IKIVVVGDGAVGKTCLLISYTTGKFPTEYVPTVFDNYSATVTVDGKQVNLGLWDTAGQEEYDRLRPLSYPNTDVFLICFS 80 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeEEEEEECCEEEEEEEEeCCCcccccccchhhcCCCCEEEEEEE
Confidence 58999999999999999999988875555554432222 122345789999999999887777777889999999999
Q ss_pred CCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccCHHHH--------HHHhCc-ccccCCceeEEEeeecCCC
Q 030429 90 AADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQAL--------VDQLGL-ESITDREVCCYMISCKDSI 160 (177)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~--------~~~~~~-~~~~~~~~~~~~~Sa~~~~ 160 (177)
++++.++......|........ .+.|+++|+||+|+.+....... ...... ........+++++||++|.
T Consensus 81 ~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~ 159 (171)
T cd00157 81 VDSPSSFENVKTKWIPEIRHYC-PNVPIILVGTKIDLRDDENTLKKLEKGKEPITPEEGEKLAKEIGAIGYMECSALTQE 159 (171)
T ss_pred CCCHHHHHHHHHHHHHHHHhhC-CCCCEEEEEccHHhhhchhhhhhcccCCCccCHHHHHHHHHHhCCeEEEEeecCCCC
Confidence 9998888887664444433322 37999999999998765432110 000000 1111122379999999999
Q ss_pred ChHHHHHHHHH
Q 030429 161 NIDAVIDWLIK 171 (177)
Q Consensus 161 ~i~~l~~~l~~ 171 (177)
|+++++++|.+
T Consensus 160 gi~~l~~~i~~ 170 (171)
T cd00157 160 GVKEVFEEAIR 170 (171)
T ss_pred CHHHHHHHHhh
Confidence 99999999875
|
Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein |
| >PTZ00132 GTP-binding nuclear protein Ran; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1e-27 Score=167.68 Aligned_cols=161 Identities=23% Similarity=0.415 Sum_probs=129.6
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEE----eCCEEEEEEecCCchhhHHhHHHHhcCCCEE
Q 030429 9 FKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVT----KGNVTIKLWDLGGQRRFRTMWERYCRGVSAI 84 (177)
Q Consensus 9 ~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~----~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~ 84 (177)
....+||+++|++|||||||++++..+.+...+.+|.+....... .+.+.+.+||++|+..+......++.+++++
T Consensus 6 ~~~~~kv~liG~~g~GKTtLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~i~~~Dt~g~~~~~~~~~~~~~~~~~~ 85 (215)
T PTZ00132 6 EVPEFKLILVGDGGVGKTTFVKRHLTGEFEKKYIPTLGVEVHPLKFYTNCGPICFNVWDTAGQEKFGGLRDGYYIKGQCA 85 (215)
T ss_pred CCCCceEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHhccCCEE
Confidence 345689999999999999999999888888888888886665533 3568999999999999988888889999999
Q ss_pred EEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccCHHHHHHHhCcccccCCceeEEEeeecCCCChHH
Q 030429 85 LYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCKDSINIDA 164 (177)
Q Consensus 85 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 164 (177)
++|+|++++.++..+..|+..+.... .+.|+++++||+|+.+.....+..+.. ...++.++++||++|.|+++
T Consensus 86 i~v~d~~~~~s~~~~~~~~~~i~~~~--~~~~i~lv~nK~Dl~~~~~~~~~~~~~-----~~~~~~~~e~Sa~~~~~v~~ 158 (215)
T PTZ00132 86 IIMFDVTSRITYKNVPNWHRDIVRVC--ENIPIVLVGNKVDVKDRQVKARQITFH-----RKKNLQYYDISAKSNYNFEK 158 (215)
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhC--CCCCEEEEEECccCccccCCHHHHHHH-----HHcCCEEEEEeCCCCCCHHH
Confidence 99999999999999998888876542 468999999999986543222222211 12334789999999999999
Q ss_pred HHHHHHHHhhhc
Q 030429 165 VIDWLIKHSKTA 176 (177)
Q Consensus 165 l~~~l~~~~~~~ 176 (177)
.|.+|.+.+...
T Consensus 159 ~f~~ia~~l~~~ 170 (215)
T PTZ00132 159 PFLWLARRLTND 170 (215)
T ss_pred HHHHHHHHHhhc
Confidence 999999887653
|
|
| >cd04129 Rho2 Rho2 subfamily | Back alignment and domain information |
|---|
Probab=99.96 E-value=8.5e-28 Score=164.70 Aligned_cols=157 Identities=21% Similarity=0.250 Sum_probs=115.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEE-EEEeC--CEEEEEEecCCchhhHHhHHHHhcCCCEEEEEEe
Q 030429 13 MELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMR-KVTKG--NVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVD 89 (177)
Q Consensus 13 ~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d 89 (177)
.||+++|++|+|||||++++..+.+...+.++...... .+..+ .+.+.+||++|+..+......++..+|++++++|
T Consensus 2 ~Ki~ivG~~g~GKStLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~a~~~llv~~ 81 (187)
T cd04129 2 RKLVIVGDGACGKTSLLSVFTLGEFPEEYHPTVFENYVTDCRVDGKPVQLALWDTAGQEEYERLRPLSYSKAHVILIGFA 81 (187)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEEEEEEECCEEEEEEEEECCCChhccccchhhcCCCCEEEEEEE
Confidence 58999999999999999999987776665555443322 22323 4678899999998887766667889999999999
Q ss_pred CCCCCCHHHHHH-HHHHHHcCCCCCCCcEEEEeeCCCcccccC------------HHHHHHHhCcccccCCceeEEEeee
Q 030429 90 AADRDSVPIARS-ELHELLMKPSLSGIPLLVLGNKIDKSEALS------------KQALVDQLGLESITDREVCCYMISC 156 (177)
Q Consensus 90 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~Sa 156 (177)
++++++++.+.. |+..+.... ++.|+++|+||+|+.+... .++. ..+.. .....++++|||
T Consensus 82 i~~~~s~~~~~~~~~~~i~~~~--~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~~---~~~~~~~~e~Sa 155 (187)
T cd04129 82 VDTPDSLENVRTKWIEEVRRYC--PNVPVILVGLKKDLRQDAVAKEEYRTQRFVPIQQG-KRVAK---EIGAKKYMECSA 155 (187)
T ss_pred CCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEeeChhhhhCcccccccccCCcCCHHHH-HHHHH---HhCCcEEEEccC
Confidence 999999999875 555554332 4699999999999854211 0111 11110 011236999999
Q ss_pred cCCCChHHHHHHHHHHhhh
Q 030429 157 KDSINIDAVIDWLIKHSKT 175 (177)
Q Consensus 157 ~~~~~i~~l~~~l~~~~~~ 175 (177)
++|.|++++|+++.+.+..
T Consensus 156 ~~~~~v~~~f~~l~~~~~~ 174 (187)
T cd04129 156 LTGEGVDDVFEAATRAALL 174 (187)
T ss_pred CCCCCHHHHHHHHHHHHhc
Confidence 9999999999999987654
|
Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors). |
| >KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.1e-29 Score=162.19 Aligned_cols=156 Identities=23% Similarity=0.398 Sum_probs=133.3
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEE----e---------CCEEEEEEecCCchhhHHhHHHH
Q 030429 11 QEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVT----K---------GNVTIKLWDLGGQRRFRTMWERY 77 (177)
Q Consensus 11 ~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~----~---------~~~~~~~~D~~g~~~~~~~~~~~ 77 (177)
.-+|.+.+|++|+||||++.++..+.|.+...+|.++++.+.. . ..+.+++|||+|+++|+++...+
T Consensus 8 ylikfLaLGDSGVGKTs~Ly~YTD~~F~~qFIsTVGIDFreKrvvY~s~gp~g~gr~~rihLQlWDTAGQERFRSLTTAF 87 (219)
T KOG0081|consen 8 YLIKFLALGDSGVGKTSFLYQYTDGKFNTQFISTVGIDFREKRVVYNSSGPGGGGRGQRIHLQLWDTAGQERFRSLTTAF 87 (219)
T ss_pred HHHHHHhhccCCCCceEEEEEecCCcccceeEEEeecccccceEEEeccCCCCCCcceEEEEeeeccccHHHHHHHHHHH
Confidence 4468889999999999999999999999999999998887622 1 13789999999999999999999
Q ss_pred hcCCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccCH-----HHHHHHhCcccccCCceeEE
Q 030429 78 CRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSK-----QALVDQLGLESITDREVCCY 152 (177)
Q Consensus 78 ~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~-----~~~~~~~~~~~~~~~~~~~~ 152 (177)
++++-.+++++|+++..||.+.+.|+..+..+....+.-+++++||+|+.+.... ..+.+++ .+|||
T Consensus 88 fRDAMGFlLiFDlT~eqSFLnvrnWlSQL~~hAYcE~PDivlcGNK~DL~~~R~Vs~~qa~~La~ky--------glPYf 159 (219)
T KOG0081|consen 88 FRDAMGFLLIFDLTSEQSFLNVRNWLSQLQTHAYCENPDIVLCGNKADLEDQRVVSEDQAAALADKY--------GLPYF 159 (219)
T ss_pred HHhhccceEEEeccchHHHHHHHHHHHHHHHhhccCCCCEEEEcCccchhhhhhhhHHHHHHHHHHh--------CCCee
Confidence 9999999999999999999999999999988887788889999999999765332 2233333 34899
Q ss_pred EeeecCCCChHHHHHHHHHHhh
Q 030429 153 MISCKDSINIDAVIDWLIKHSK 174 (177)
Q Consensus 153 ~~Sa~~~~~i~~l~~~l~~~~~ 174 (177)
++||-+|.|+++..+.|...+-
T Consensus 160 ETSA~tg~Nv~kave~LldlvM 181 (219)
T KOG0081|consen 160 ETSACTGTNVEKAVELLLDLVM 181 (219)
T ss_pred eeccccCcCHHHHHHHHHHHHH
Confidence 9999999999998888877654
|
|
| >cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.6e-27 Score=158.35 Aligned_cols=153 Identities=18% Similarity=0.132 Sum_probs=107.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCC--CCCccceeEEEEEeCCEEEEEEecCCchhh----H-----HhHHHHhcCCC
Q 030429 14 ELSLIGLQNAGKTSLVNTIATGGYSED--MIPTVGFNMRKVTKGNVTIKLWDLGGQRRF----R-----TMWERYCRGVS 82 (177)
Q Consensus 14 ~i~i~G~~~~GKSsli~~l~~~~~~~~--~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~----~-----~~~~~~~~~~d 82 (177)
+|+++|.+|+|||||++++.+..+... ...|..........++..+.+|||||+... + .........+|
T Consensus 2 ~i~~~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~d 81 (168)
T cd01897 2 TLVIAGYPNVGKSSLVNKLTRAKPEVAPYPFTTKSLFVGHFDYKYLRWQVIDTPGLLDRPLEERNTIEMQAITALAHLRA 81 (168)
T ss_pred eEEEEcCCCCCHHHHHHHHhcCCCccCCCCCcccceeEEEEccCceEEEEEECCCcCCccccCCchHHHHHHHHHHhccC
Confidence 799999999999999999998766432 223444555555667789999999997321 0 11111123368
Q ss_pred EEEEEEeCCCCCCH--HHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccCHHHHHHHhCcccccCCceeEEEeeecCCC
Q 030429 83 AILYVVDAADRDSV--PIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCKDSI 160 (177)
Q Consensus 83 ~~i~v~d~~~~~~~--~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 160 (177)
++++|+|+++..++ +....|+..+.... .+.|+++|+||+|+.+.....+ .+.+. .....+++++||++|.
T Consensus 82 ~~l~v~d~~~~~~~~~~~~~~~~~~l~~~~--~~~pvilv~NK~Dl~~~~~~~~-~~~~~----~~~~~~~~~~Sa~~~~ 154 (168)
T cd01897 82 AVLFLFDPSETCGYSLEEQLSLFEEIKPLF--KNKPVIVVLNKIDLLTFEDLSE-IEEEE----ELEGEEVLKISTLTEE 154 (168)
T ss_pred cEEEEEeCCcccccchHHHHHHHHHHHhhc--CcCCeEEEEEccccCchhhHHH-HHHhh----hhccCceEEEEecccC
Confidence 99999999987653 55556666554332 3789999999999976543333 11211 2234579999999999
Q ss_pred ChHHHHHHHHHHh
Q 030429 161 NIDAVIDWLIKHS 173 (177)
Q Consensus 161 ~i~~l~~~l~~~~ 173 (177)
|++++++++.+.+
T Consensus 155 gi~~l~~~l~~~~ 167 (168)
T cd01897 155 GVDEVKNKACELL 167 (168)
T ss_pred CHHHHHHHHHHHh
Confidence 9999999999876
|
NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins. |
| >cd01898 Obg Obg subfamily | Back alignment and domain information |
|---|
Probab=99.95 E-value=6.1e-27 Score=158.01 Aligned_cols=157 Identities=23% Similarity=0.220 Sum_probs=109.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCC--CCCccceeEEEEEeCCE-EEEEEecCCchh----hHHhHH---HHhcCCCE
Q 030429 14 ELSLIGLQNAGKTSLVNTIATGGYSED--MIPTVGFNMRKVTKGNV-TIKLWDLGGQRR----FRTMWE---RYCRGVSA 83 (177)
Q Consensus 14 ~i~i~G~~~~GKSsli~~l~~~~~~~~--~~~t~~~~~~~~~~~~~-~~~~~D~~g~~~----~~~~~~---~~~~~~d~ 83 (177)
+|+++|.+|||||||++++.+...... ...|.......+..++. .+.+|||||... ...... ..+..+|+
T Consensus 2 ~v~ivG~~~~GKStl~~~l~~~~~~v~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~d~ 81 (170)
T cd01898 2 DVGLVGLPNAGKSTLLSAISNAKPKIADYPFTTLVPNLGVVRVDDGRSFVVADIPGLIEGASEGKGLGHRFLRHIERTRL 81 (170)
T ss_pred CeEEECCCCCCHHHHHHHHhcCCccccCCCccccCCcceEEEcCCCCeEEEEecCcccCcccccCCchHHHHHHHHhCCE
Confidence 689999999999999999986543211 22343444444555555 899999999632 111222 23456999
Q ss_pred EEEEEeCCCC-CCHHHHHHHHHHHHcCCC-CCCCcEEEEeeCCCcccccCHHHHHHHhCcccccCCceeEEEeeecCCCC
Q 030429 84 ILYVVDAADR-DSVPIARSELHELLMKPS-LSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCKDSIN 161 (177)
Q Consensus 84 ~i~v~d~~~~-~~~~~~~~~~~~~~~~~~-~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 161 (177)
+++|+|++++ .+++....|...+..... ...+|+++|+||+|+.+.....+..+.+.... ...+++++||+++.|
T Consensus 82 vi~v~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~---~~~~~~~~Sa~~~~g 158 (170)
T cd01898 82 LLHVIDLSGDDDPVEDYKTIRNELELYNPELLEKPRIVVLNKIDLLDEEELFELLKELLKEL---WGKPVFPISALTGEG 158 (170)
T ss_pred EEEEEecCCCCCHHHHHHHHHHHHHHhCccccccccEEEEEchhcCCchhhHHHHHHHHhhC---CCCCEEEEecCCCCC
Confidence 9999999998 788888877776654321 23689999999999976544433333221111 234789999999999
Q ss_pred hHHHHHHHHHHh
Q 030429 162 IDAVIDWLIKHS 173 (177)
Q Consensus 162 i~~l~~~l~~~~ 173 (177)
++++++++.+.+
T Consensus 159 i~~l~~~i~~~~ 170 (170)
T cd01898 159 LDELLRKLAELL 170 (170)
T ss_pred HHHHHHHHHhhC
Confidence 999999998753
|
The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain. |
| >cd04102 RabL3 RabL3 (Rab-like3) subfamily | Back alignment and domain information |
|---|
Probab=99.95 E-value=6.4e-27 Score=161.22 Aligned_cols=117 Identities=28% Similarity=0.394 Sum_probs=99.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEE--EEEe-------CCEEEEEEecCCchhhHHhHHHHhcCCCE
Q 030429 13 MELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMR--KVTK-------GNVTIKLWDLGGQRRFRTMWERYCRGVSA 83 (177)
Q Consensus 13 ~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~--~~~~-------~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ 83 (177)
+||+++|++|||||||+++++++.+...+.+|.+.... .+.. ..+.+++||++|++++......+++++|+
T Consensus 1 vKIvlvGd~gVGKTSLi~~~~~~~f~~~~~~Tig~~~~~k~~~~~~~~~~~~~~~l~IwDtaG~e~~~~l~~~~yr~ad~ 80 (202)
T cd04102 1 VRVLVVGDSGVGKSSLVHLICKNQVLGRPSWTVGCSVDVKHHTYKEGTPEEKTFFVELWDVGGSESVKSTRAVFYNQVNG 80 (202)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCCCcceeeeEEEEEEEEcCCCCCCcEEEEEEEecCCchhHHHHHHHHhCcCCE
Confidence 58999999999999999999999988888888874432 2332 35789999999999999999999999999
Q ss_pred EEEEEeCCCCCCHHHHHHHHHHHHcCC------------------CCCCCcEEEEeeCCCcccc
Q 030429 84 ILYVVDAADRDSVPIARSELHELLMKP------------------SLSGIPLLVLGNKIDKSEA 129 (177)
Q Consensus 84 ~i~v~d~~~~~~~~~~~~~~~~~~~~~------------------~~~~~~~iiv~nK~D~~~~ 129 (177)
+++|||++++.+++++..|+..+.... ...+.|+++|+||+|+.+.
T Consensus 81 iIlVyDvtn~~Sf~~l~~W~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~PiilVGnK~Dl~~~ 144 (202)
T cd04102 81 IILVHDLTNRKSSQNLQRWSLEALNKDTFPTGLLVTNGDYDSEQFGGNQIPLLVIGTKLDQIPE 144 (202)
T ss_pred EEEEEECcChHHHHHHHHHHHHHHHhhccccccccccccccccccCCCCceEEEEEECccchhh
Confidence 999999999999999999998886531 2246899999999999654
|
RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown. |
| >cd04171 SelB SelB subfamily | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.6e-26 Score=154.94 Aligned_cols=153 Identities=18% Similarity=0.170 Sum_probs=103.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCC---CCCC--CCCccceeEEEEEeC-CEEEEEEecCCchhhHHhHHHHhcCCCEEEE
Q 030429 13 MELSLIGLQNAGKTSLVNTIATGG---YSED--MIPTVGFNMRKVTKG-NVTIKLWDLGGQRRFRTMWERYCRGVSAILY 86 (177)
Q Consensus 13 ~~i~i~G~~~~GKSsli~~l~~~~---~~~~--~~~t~~~~~~~~~~~-~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~ 86 (177)
+.|+++|.+|||||||++++.+.. +... ...|.+.....+... +..+.+|||||++++......++.++|++++
T Consensus 1 ~~i~i~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~ad~ii~ 80 (164)
T cd04171 1 MIIGTAGHIDHGKTTLIKALTGIETDRLPEEKKRGITIDLGFAYLDLPSGKRLGFIDVPGHEKFIKNMLAGAGGIDLVLL 80 (164)
T ss_pred CEEEEEecCCCCHHHHHHHHhCcccccchhhhccCceEEeeeEEEEecCCcEEEEEECCChHHHHHHHHhhhhcCCEEEE
Confidence 368999999999999999998532 2211 123444444445554 7799999999999998777778889999999
Q ss_pred EEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccCH----HHHHHHhCcccccCCceeEEEeeecCCCCh
Q 030429 87 VVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSK----QALVDQLGLESITDREVCCYMISCKDSINI 162 (177)
Q Consensus 87 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i 162 (177)
|+|+++... ......+..+ ... ...|+++|+||+|+.+.... +++.+.+... .....+++++||+++.|+
T Consensus 81 V~d~~~~~~-~~~~~~~~~~-~~~--~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~Sa~~~~~v 154 (164)
T cd04171 81 VVAADEGIM-PQTREHLEIL-ELL--GIKRGLVVLTKADLVDEDWLELVEEEIRELLAGT--FLADAPIFPVSAVTGEGI 154 (164)
T ss_pred EEECCCCcc-HhHHHHHHHH-HHh--CCCcEEEEEECccccCHHHHHHHHHHHHHHHHhc--CcCCCcEEEEeCCCCcCH
Confidence 999976321 2222222211 111 12489999999999764321 2222332211 113458999999999999
Q ss_pred HHHHHHHHH
Q 030429 163 DAVIDWLIK 171 (177)
Q Consensus 163 ~~l~~~l~~ 171 (177)
+++++.+.+
T Consensus 155 ~~l~~~l~~ 163 (164)
T cd04171 155 EELKEYLDE 163 (164)
T ss_pred HHHHHHHhh
Confidence 999998864
|
SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo |
| >KOG0395 consensus Ras-related GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.4e-27 Score=162.30 Aligned_cols=160 Identities=25% Similarity=0.357 Sum_probs=132.7
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEE---EEeCCEEEEEEecCCchhhHHhHHHHhcCCCEEEEE
Q 030429 11 QEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRK---VTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYV 87 (177)
Q Consensus 11 ~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~---~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v 87 (177)
..+||+++|.+|+|||+|+.++..+.|...+.+|++..+.. +....+.+.++||+|+..+..+...++...|++++|
T Consensus 2 ~~~kvvvlG~~gVGKSal~~qf~~~~f~~~y~ptied~y~k~~~v~~~~~~l~ilDt~g~~~~~~~~~~~~~~~~gF~lV 81 (196)
T KOG0395|consen 2 REYKVVVLGAGGVGKSALTIQFLTGRFVEDYDPTIEDSYRKELTVDGEVCMLEILDTAGQEEFSAMRDLYIRNGDGFLLV 81 (196)
T ss_pred CceEEEEECCCCCCcchheeeecccccccccCCCccccceEEEEECCEEEEEEEEcCCCcccChHHHHHhhccCcEEEEE
Confidence 46799999999999999999999999999999999843333 334557888999999999999999999999999999
Q ss_pred EeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccC--HHHHHHHhCcccccCCceeEEEeeecCCCChHHH
Q 030429 88 VDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALS--KQALVDQLGLESITDREVCCYMISCKDSINIDAV 165 (177)
Q Consensus 88 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l 165 (177)
|+++++.||+....++..+.........|+++|+||+|+..... .++-. .+ ...-.++|+++||+.+.+++++
T Consensus 82 ysitd~~SF~~~~~l~~~I~r~~~~~~~PivlVGNK~Dl~~~R~V~~eeg~-~l----a~~~~~~f~E~Sak~~~~v~~~ 156 (196)
T KOG0395|consen 82 YSITDRSSFEEAKQLREQILRVKGRDDVPIILVGNKCDLERERQVSEEEGK-AL----ARSWGCAFIETSAKLNYNVDEV 156 (196)
T ss_pred EECCCHHHHHHHHHHHHHHHHhhCcCCCCEEEEEEcccchhccccCHHHHH-HH----HHhcCCcEEEeeccCCcCHHHH
Confidence 99999999999999999996666656789999999999976322 22211 11 2223346999999999999999
Q ss_pred HHHHHHHhhh
Q 030429 166 IDWLIKHSKT 175 (177)
Q Consensus 166 ~~~l~~~~~~ 175 (177)
|..|.+.+..
T Consensus 157 F~~L~r~~~~ 166 (196)
T KOG0395|consen 157 FYELVREIRL 166 (196)
T ss_pred HHHHHHHHHh
Confidence 9999998765
|
|
| >PRK12299 obgE GTPase CgtA; Reviewed | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.4e-26 Score=169.04 Aligned_cols=169 Identities=20% Similarity=0.216 Sum_probs=122.5
Q ss_pred eecccccceeEEEEEcCCCCCHHHHHHHHhcCCCC--CCCCCccceeEEEEEe-CCEEEEEEecCCchh-------hHHh
Q 030429 4 HISLFFKQEMELSLIGLQNAGKTSLVNTIATGGYS--EDMIPTVGFNMRKVTK-GNVTIKLWDLGGQRR-------FRTM 73 (177)
Q Consensus 4 ~~~~~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~--~~~~~t~~~~~~~~~~-~~~~~~~~D~~g~~~-------~~~~ 73 (177)
...++.+--..|+++|.|+||||||++++.+.... .....|.......+.. +...+.+||+||... ....
T Consensus 150 ~~~lelk~~adVglVG~PNaGKSTLln~ls~a~~~va~ypfTT~~p~~G~v~~~~~~~~~i~D~PGli~ga~~~~gLg~~ 229 (335)
T PRK12299 150 WLRLELKLLADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLHPNLGVVRVDDYKSFVIADIPGLIEGASEGAGLGHR 229 (335)
T ss_pred EEEEEEcccCCEEEEcCCCCCHHHHHHHHHcCCCccCCCCCceeCceEEEEEeCCCcEEEEEeCCCccCCCCccccHHHH
Confidence 45566777789999999999999999999865432 2233455666666666 557899999999632 1222
Q ss_pred HHHHhcCCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCC-CCCCcEEEEeeCCCcccccCHH-HHHHHhCcccccCCceeE
Q 030429 74 WERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPS-LSGIPLLVLGNKIDKSEALSKQ-ALVDQLGLESITDREVCC 151 (177)
Q Consensus 74 ~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~~iiv~nK~D~~~~~~~~-~~~~~~~~~~~~~~~~~~ 151 (177)
...+++.++++++|+|+++.++++....|..++..+.. ..++|+++|+||+|+.+..... +..+.. ......++
T Consensus 230 flrhie~a~vlI~ViD~s~~~s~e~~~~~~~EL~~~~~~L~~kp~IIV~NKiDL~~~~~~~~~~~~~~----~~~~~~~i 305 (335)
T PRK12299 230 FLKHIERTRLLLHLVDIEAVDPVEDYKTIRNELEKYSPELADKPRILVLNKIDLLDEEEEREKRAALE----LAALGGPV 305 (335)
T ss_pred HHHHhhhcCEEEEEEcCCCCCCHHHHHHHHHHHHHhhhhcccCCeEEEEECcccCCchhHHHHHHHHH----HHhcCCCE
Confidence 33456789999999999988889888888887765422 2468999999999997643322 111111 01123479
Q ss_pred EEeeecCCCChHHHHHHHHHHhhhc
Q 030429 152 YMISCKDSINIDAVIDWLIKHSKTA 176 (177)
Q Consensus 152 ~~~Sa~~~~~i~~l~~~l~~~~~~~ 176 (177)
+++||+++.|+++++++|.+.+.+.
T Consensus 306 ~~iSAktg~GI~eL~~~L~~~l~~~ 330 (335)
T PRK12299 306 FLISAVTGEGLDELLRALWELLEEA 330 (335)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHhh
Confidence 9999999999999999999988654
|
|
| >KOG0083 consensus GTPase Rab26/Rab37, small G protein superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.4e-28 Score=152.90 Aligned_cols=151 Identities=28% Similarity=0.465 Sum_probs=125.8
Q ss_pred EEcCCCCCHHHHHHHHhcCCCC-CCCCCccceeEEE----EEeCCEEEEEEecCCchhhHHhHHHHhcCCCEEEEEEeCC
Q 030429 17 LIGLQNAGKTSLVNTIATGGYS-EDMIPTVGFNMRK----VTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAA 91 (177)
Q Consensus 17 i~G~~~~GKSsli~~l~~~~~~-~~~~~t~~~~~~~----~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~ 91 (177)
++|++++|||+|+-++..+.|- ....+|.++++.. +....+.+++|||+||++|++....|++++|+++++||+.
T Consensus 2 llgds~~gktcllir~kdgafl~~~fistvgid~rnkli~~~~~kvklqiwdtagqerfrsvt~ayyrda~allllydia 81 (192)
T KOG0083|consen 2 LLGDSCTGKTCLLIRFKDGAFLAGNFISTVGIDFRNKLIDMDDKKVKLQIWDTAGQERFRSVTHAYYRDADALLLLYDIA 81 (192)
T ss_pred ccccCccCceEEEEEeccCceecCceeeeeeeccccceeccCCcEEEEEEeeccchHHHhhhhHhhhcccceeeeeeecc
Confidence 6899999999999999877654 3455677777665 3345688999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccc-----cCHHHHHHHhCcccccCCceeEEEeeecCCCChHHHH
Q 030429 92 DRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEA-----LSKQALVDQLGLESITDREVCCYMISCKDSINIDAVI 166 (177)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~ 166 (177)
+..||++++.|+.++-++.. ..+.+++++||+|+..+ ++-+.+.+.++. |++++||++|.|++..|
T Consensus 82 nkasfdn~~~wlsei~ey~k-~~v~l~llgnk~d~a~er~v~~ddg~kla~~y~i--------pfmetsaktg~nvd~af 152 (192)
T KOG0083|consen 82 NKASFDNCQAWLSEIHEYAK-EAVALMLLGNKCDLAHERAVKRDDGEKLAEAYGI--------PFMETSAKTGFNVDLAF 152 (192)
T ss_pred cchhHHHHHHHHHHHHHHHH-hhHhHhhhccccccchhhccccchHHHHHHHHCC--------CceeccccccccHhHHH
Confidence 99999999999999977633 45788999999999552 233555555554 89999999999999999
Q ss_pred HHHHHHhhhc
Q 030429 167 DWLIKHSKTA 176 (177)
Q Consensus 167 ~~l~~~~~~~ 176 (177)
-.|.+.+++.
T Consensus 153 ~~ia~~l~k~ 162 (192)
T KOG0083|consen 153 LAIAEELKKL 162 (192)
T ss_pred HHHHHHHHHh
Confidence 9999988764
|
|
| >cd01878 HflX HflX subfamily | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.9e-26 Score=158.03 Aligned_cols=154 Identities=22% Similarity=0.279 Sum_probs=108.8
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcCCCCC--CCCCccceeEEEEEeCC-EEEEEEecCCchh---------hHHhHHHH
Q 030429 10 KQEMELSLIGLQNAGKTSLVNTIATGGYSE--DMIPTVGFNMRKVTKGN-VTIKLWDLGGQRR---------FRTMWERY 77 (177)
Q Consensus 10 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~--~~~~t~~~~~~~~~~~~-~~~~~~D~~g~~~---------~~~~~~~~ 77 (177)
+..++|+++|++|||||||++++++..+.. ...+|.......+..++ ..+.+|||||... +.... ..
T Consensus 39 ~~~~~I~iiG~~g~GKStLl~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~-~~ 117 (204)
T cd01878 39 SGIPTVALVGYTNAGKSTLFNALTGADVYAEDQLFATLDPTTRRLRLPDGREVLLTDTVGFIRDLPHQLVEAFRSTL-EE 117 (204)
T ss_pred cCCCeEEEECCCCCCHHHHHHHHhcchhccCCccceeccceeEEEEecCCceEEEeCCCccccCCCHHHHHHHHHHH-HH
Confidence 445899999999999999999999775332 23344444444555444 4899999999622 22211 23
Q ss_pred hcCCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccCHHHHHHHhCcccccCCceeEEEeeec
Q 030429 78 CRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCK 157 (177)
Q Consensus 78 ~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 157 (177)
+..+|++++|+|++++.+......+...+ ......++|+++|+||+|+.+..... +. ......+++++||+
T Consensus 118 ~~~~d~ii~v~D~~~~~~~~~~~~~~~~l-~~~~~~~~~viiV~NK~Dl~~~~~~~---~~-----~~~~~~~~~~~Sa~ 188 (204)
T cd01878 118 VAEADLLLHVVDASDPDYEEQIETVEKVL-KELGAEDIPMILVLNKIDLLDDEELE---ER-----LEAGRPDAVFISAK 188 (204)
T ss_pred HhcCCeEEEEEECCCCChhhHHHHHHHHH-HHcCcCCCCEEEEEEccccCChHHHH---HH-----hhcCCCceEEEEcC
Confidence 56799999999999988877665544443 32233468999999999997653322 11 11234479999999
Q ss_pred CCCChHHHHHHHHHHh
Q 030429 158 DSINIDAVIDWLIKHS 173 (177)
Q Consensus 158 ~~~~i~~l~~~l~~~~ 173 (177)
++.|+++++++|.+.+
T Consensus 189 ~~~gi~~l~~~L~~~~ 204 (204)
T cd01878 189 TGEGLDELLEAIEELL 204 (204)
T ss_pred CCCCHHHHHHHHHhhC
Confidence 9999999999998754
|
A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms. |
| >cd01890 LepA LepA subfamily | Back alignment and domain information |
|---|
Probab=99.95 E-value=5.6e-26 Score=154.60 Aligned_cols=151 Identities=19% Similarity=0.288 Sum_probs=106.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC-------CCCCCCCcc------cee----EEEE-----EeCCEEEEEEecCCchhhH
Q 030429 14 ELSLIGLQNAGKTSLVNTIATGG-------YSEDMIPTV------GFN----MRKV-----TKGNVTIKLWDLGGQRRFR 71 (177)
Q Consensus 14 ~i~i~G~~~~GKSsli~~l~~~~-------~~~~~~~t~------~~~----~~~~-----~~~~~~~~~~D~~g~~~~~ 71 (177)
+|+++|+++||||||+++|++.. +...+.++. +.. .... ...++.+++|||||+.++.
T Consensus 2 ni~~vG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~ 81 (179)
T cd01890 2 NFSIIAHIDHGKSTLADRLLELTGTVSKREMKEQVLDSMDLERERGITIKAQTVRLNYKAKDGQEYLLNLIDTPGHVDFS 81 (179)
T ss_pred cEEEEeecCCCHHHHHHHHHHHhCCCCcCCCceEeccCChhHHHCCCeEecceEEEEEecCCCCcEEEEEEECCCChhhH
Confidence 78999999999999999998632 111111111 111 1112 3356889999999999999
Q ss_pred HhHHHHhcCCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccCH---HHHHHHhCcccccCCc
Q 030429 72 TMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSK---QALVDQLGLESITDRE 148 (177)
Q Consensus 72 ~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~---~~~~~~~~~~~~~~~~ 148 (177)
..+..++.++|++++|+|+++..+......+.. ... .++|+++|+||+|+.+.... +++.+.++. ..
T Consensus 82 ~~~~~~~~~ad~~i~v~D~~~~~~~~~~~~~~~-~~~----~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~-----~~ 151 (179)
T cd01890 82 YEVSRSLAACEGALLLVDATQGVEAQTLANFYL-ALE----NNLEIIPVINKIDLPSADPERVKQQIEDVLGL-----DP 151 (179)
T ss_pred HHHHHHHHhcCeEEEEEECCCCccHhhHHHHHH-HHH----cCCCEEEEEECCCCCcCCHHHHHHHHHHHhCC-----Cc
Confidence 999999999999999999998766665544432 222 36899999999998653211 222222221 12
Q ss_pred eeEEEeeecCCCChHHHHHHHHHHhh
Q 030429 149 VCCYMISCKDSINIDAVIDWLIKHSK 174 (177)
Q Consensus 149 ~~~~~~Sa~~~~~i~~l~~~l~~~~~ 174 (177)
..++++||++|.|+++++++|.+.+.
T Consensus 152 ~~~~~~Sa~~g~gi~~l~~~l~~~~~ 177 (179)
T cd01890 152 SEAILVSAKTGLGVEDLLEAIVERIP 177 (179)
T ss_pred ccEEEeeccCCCCHHHHHHHHHhhCC
Confidence 35899999999999999999988763
|
LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype. |
| >PRK15494 era GTPase Era; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.4e-25 Score=165.94 Aligned_cols=158 Identities=20% Similarity=0.243 Sum_probs=110.7
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcCCCC---CCCCCccceeEEEEEeCCEEEEEEecCCchhh-HHh-------HHHHh
Q 030429 10 KQEMELSLIGLQNAGKTSLVNTIATGGYS---EDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRF-RTM-------WERYC 78 (177)
Q Consensus 10 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~---~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~-~~~-------~~~~~ 78 (177)
++..+|+++|.+|||||||+|+|++..+. +....|.......+..++.++.+|||||.... ... ....+
T Consensus 50 ~k~~kV~ivG~~nvGKSTLin~l~~~k~~ivs~k~~tTr~~~~~~~~~~~~qi~~~DTpG~~~~~~~l~~~~~r~~~~~l 129 (339)
T PRK15494 50 QKTVSVCIIGRPNSGKSTLLNRIIGEKLSIVTPKVQTTRSIITGIITLKDTQVILYDTPGIFEPKGSLEKAMVRCAWSSL 129 (339)
T ss_pred cceeEEEEEcCCCCCHHHHHHHHhCCceeeccCCCCCccCcEEEEEEeCCeEEEEEECCCcCCCcccHHHHHHHHHHHHh
Confidence 45679999999999999999999987654 33334545555556778889999999997432 111 11246
Q ss_pred cCCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccCHHHHHHHhCcccccCCceeEEEeeecC
Q 030429 79 RGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCKD 158 (177)
Q Consensus 79 ~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 158 (177)
.++|++++|+|.++ ++.....++...+.. .+.|.++|+||+|+.+. ...+..+.+... .....++++||++
T Consensus 130 ~~aDvil~VvD~~~--s~~~~~~~il~~l~~---~~~p~IlViNKiDl~~~-~~~~~~~~l~~~---~~~~~i~~iSAkt 200 (339)
T PRK15494 130 HSADLVLLIIDSLK--SFDDITHNILDKLRS---LNIVPIFLLNKIDIESK-YLNDIKAFLTEN---HPDSLLFPISALS 200 (339)
T ss_pred hhCCEEEEEEECCC--CCCHHHHHHHHHHHh---cCCCEEEEEEhhcCccc-cHHHHHHHHHhc---CCCcEEEEEeccC
Confidence 78999999999755 455554444443332 24677889999998653 333344433221 1234799999999
Q ss_pred CCChHHHHHHHHHHhhhc
Q 030429 159 SINIDAVIDWLIKHSKTA 176 (177)
Q Consensus 159 ~~~i~~l~~~l~~~~~~~ 176 (177)
|.|+++++++|.+.+...
T Consensus 201 g~gv~eL~~~L~~~l~~~ 218 (339)
T PRK15494 201 GKNIDGLLEYITSKAKIS 218 (339)
T ss_pred ccCHHHHHHHHHHhCCCC
Confidence 999999999999887653
|
|
| >cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.5e-25 Score=150.92 Aligned_cols=156 Identities=22% Similarity=0.246 Sum_probs=109.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCCCC--ccceeEEEEEe---CCEEEEEEecCCchhhHHhHHHHhcCCCEEEEEE
Q 030429 14 ELSLIGLQNAGKTSLVNTIATGGYSEDMIP--TVGFNMRKVTK---GNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVV 88 (177)
Q Consensus 14 ~i~i~G~~~~GKSsli~~l~~~~~~~~~~~--t~~~~~~~~~~---~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~ 88 (177)
.|+++|.+|+|||||+++|.++.+...... +.......+.. .+..+.+|||||+..+...+..++..+|++++|+
T Consensus 2 ~i~iiG~~~~GKtsli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~il~v~ 81 (168)
T cd01887 2 VVTVMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAFEVPAEVLKIPGITFIDTPGHEAFTNMRARGASLTDIAILVV 81 (168)
T ss_pred EEEEEecCCCCHHHHHHHHHhcccccccCCCeEEeeccEEEecccCCcceEEEEeCCCcHHHHHHHHHHHhhcCEEEEEE
Confidence 489999999999999999997776554322 22233333444 3688999999999999888888889999999999
Q ss_pred eCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccCHHHHHH---HhCccc--ccCCceeEEEeeecCCCChH
Q 030429 89 DAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVD---QLGLES--ITDREVCCYMISCKDSINID 163 (177)
Q Consensus 89 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~---~~~~~~--~~~~~~~~~~~Sa~~~~~i~ 163 (177)
|+++...... ...+..+.. .++|+++|+||+|+.+.. .+...+ .+.... ......+++++|+++|.|++
T Consensus 82 d~~~~~~~~~-~~~~~~~~~----~~~p~ivv~NK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 155 (168)
T cd01887 82 AADDGVMPQT-IEAIKLAKA----ANVPFIVALNKIDKPNAN-PERVKNELSELGLQGEDEWGGDVQIVPTSAKTGEGID 155 (168)
T ss_pred ECCCCccHHH-HHHHHHHHH----cCCCEEEEEEceeccccc-HHHHHHHHHHhhccccccccCcCcEEEeecccCCCHH
Confidence 9987543222 222222222 368999999999987532 222222 221111 12245689999999999999
Q ss_pred HHHHHHHHHhhh
Q 030429 164 AVIDWLIKHSKT 175 (177)
Q Consensus 164 ~l~~~l~~~~~~ 175 (177)
+++++|.+...+
T Consensus 156 ~l~~~l~~~~~~ 167 (168)
T cd01887 156 DLLEAILLLAEK 167 (168)
T ss_pred HHHHHHHHhhhc
Confidence 999999987654
|
IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s. |
| >PRK03003 GTP-binding protein Der; Reviewed | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.1e-25 Score=170.84 Aligned_cols=161 Identities=21% Similarity=0.180 Sum_probs=113.0
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcCCCC---CCCCCccceeEEEEEeCCEEEEEEecCCch----------hhHHhH-H
Q 030429 10 KQEMELSLIGLQNAGKTSLVNTIATGGYS---EDMIPTVGFNMRKVTKGNVTIKLWDLGGQR----------RFRTMW-E 75 (177)
Q Consensus 10 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~---~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~----------~~~~~~-~ 75 (177)
...++|+++|.+|||||||+++|++..+. .....|.......+..++..+.+|||||.. .+.... .
T Consensus 209 ~~~~kI~iiG~~nvGKSSLin~l~~~~~~~~s~~~gtT~d~~~~~~~~~~~~~~l~DTaG~~~~~~~~~~~e~~~~~~~~ 288 (472)
T PRK03003 209 GGPRRVALVGKPNVGKSSLLNKLAGEERSVVDDVAGTTVDPVDSLIELGGKTWRFVDTAGLRRRVKQASGHEYYASLRTH 288 (472)
T ss_pred ccceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCccCCcceEEEEECCEEEEEEECCCccccccccchHHHHHHHHHH
Confidence 35689999999999999999999977542 222334334444566778889999999952 222221 2
Q ss_pred HHhcCCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccCHHHHHHHhCcccccCCceeEEEee
Q 030429 76 RYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMIS 155 (177)
Q Consensus 76 ~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 155 (177)
.+++.+|++++|+|++++.+..... ++..+.. .++|+++|+||+|+.+........+............+++++|
T Consensus 289 ~~i~~ad~vilV~Da~~~~s~~~~~-~~~~~~~----~~~piIiV~NK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~~~S 363 (472)
T PRK03003 289 AAIEAAEVAVVLIDASEPISEQDQR-VLSMVIE----AGRALVLAFNKWDLVDEDRRYYLEREIDRELAQVPWAPRVNIS 363 (472)
T ss_pred HHHhcCCEEEEEEeCCCCCCHHHHH-HHHHHHH----cCCCEEEEEECcccCChhHHHHHHHHHHHhcccCCCCCEEEEE
Confidence 3578899999999999988777653 3343333 3689999999999976433222222222112222345789999
Q ss_pred ecCCCChHHHHHHHHHHhhh
Q 030429 156 CKDSINIDAVIDWLIKHSKT 175 (177)
Q Consensus 156 a~~~~~i~~l~~~l~~~~~~ 175 (177)
|++|.|++++|+.+.+.+.+
T Consensus 364 Ak~g~gv~~lf~~i~~~~~~ 383 (472)
T PRK03003 364 AKTGRAVDKLVPALETALES 383 (472)
T ss_pred CCCCCCHHHHHHHHHHHHHH
Confidence 99999999999999987753
|
|
| >TIGR00436 era GTP-binding protein Era | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.8e-25 Score=160.09 Aligned_cols=154 Identities=20% Similarity=0.165 Sum_probs=103.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCC--C-CCCccceeEEEEEeCCEEEEEEecCCchhhH--------HhHHHHhcCCC
Q 030429 14 ELSLIGLQNAGKTSLVNTIATGGYSE--D-MIPTVGFNMRKVTKGNVTIKLWDLGGQRRFR--------TMWERYCRGVS 82 (177)
Q Consensus 14 ~i~i~G~~~~GKSsli~~l~~~~~~~--~-~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~--------~~~~~~~~~~d 82 (177)
+|+++|.||||||||+|+|++..+.. . ...|..........++.++.+|||||..... .....++.++|
T Consensus 2 ~V~liG~pnvGKSTLln~L~~~~~~~vs~~~~TTr~~i~~i~~~~~~qii~vDTPG~~~~~~~l~~~~~~~~~~~l~~aD 81 (270)
T TIGR00436 2 FVAILGRPNVGKSTLLNQLHGQKISITSPKAQTTRNRISGIHTTGASQIIFIDTPGFHEKKHSLNRLMMKEARSAIGGVD 81 (270)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcEeecCCCCCcccCcEEEEEEcCCcEEEEEECcCCCCCcchHHHHHHHHHHHHHhhCC
Confidence 68999999999999999999876431 2 2223222222334566789999999964321 11234578999
Q ss_pred EEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccCHHHHHHHhCcccccCCceeEEEeeecCCCCh
Q 030429 83 AILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCKDSINI 162 (177)
Q Consensus 83 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i 162 (177)
++++|+|+++..+.. . ++...+.. .+.|+++|+||+|+.+........+.+... ....+++++||++|.|+
T Consensus 82 vvl~VvD~~~~~~~~--~-~i~~~l~~---~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~---~~~~~v~~iSA~~g~gi 152 (270)
T TIGR00436 82 LILFVVDSDQWNGDG--E-FVLTKLQN---LKRPVVLTRNKLDNKFKDKLLPLIDKYAIL---EDFKDIVPISALTGDNT 152 (270)
T ss_pred EEEEEEECCCCCchH--H-HHHHHHHh---cCCCEEEEEECeeCCCHHHHHHHHHHHHhh---cCCCceEEEecCCCCCH
Confidence 999999998876654 2 22333222 368999999999997533222222222111 11226899999999999
Q ss_pred HHHHHHHHHHhhhc
Q 030429 163 DAVIDWLIKHSKTA 176 (177)
Q Consensus 163 ~~l~~~l~~~~~~~ 176 (177)
++++++|.+.+...
T Consensus 153 ~~L~~~l~~~l~~~ 166 (270)
T TIGR00436 153 SFLAAFIEVHLPEG 166 (270)
T ss_pred HHHHHHHHHhCCCC
Confidence 99999999887643
|
Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein. |
| >TIGR00231 small_GTP small GTP-binding protein domain | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.5e-25 Score=147.87 Aligned_cols=154 Identities=23% Similarity=0.328 Sum_probs=115.6
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEE--EEeCC--EEEEEEecCCchhhHHhHHHHhcCCCEEEEE
Q 030429 12 EMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRK--VTKGN--VTIKLWDLGGQRRFRTMWERYCRGVSAILYV 87 (177)
Q Consensus 12 ~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~--~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v 87 (177)
.+||+++|.+|+|||||++++..+.+.....++.+..... +..++ +.+.+||+||+..+...+......++.++.+
T Consensus 1 ~~ki~~~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~~ 80 (161)
T TIGR00231 1 EIKIVIVGDPNVGKSTLLNRLLGNKFITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQEDYRAIRRLYYRAVESSLRV 80 (161)
T ss_pred CeEEEEECCCCCCHHHHHHHHhCCCCcCcCCCCceeeeeEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhhhEEEEE
Confidence 3699999999999999999999888666665655554444 55666 8899999999999988888888899999999
Q ss_pred EeCCCC-CCHHHHH-HHHHHHHcCCCCCCCcEEEEeeCCCcccccCHHHHHHHhCcccccCCceeEEEeeecCCCChHHH
Q 030429 88 VDAADR-DSVPIAR-SELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCKDSINIDAV 165 (177)
Q Consensus 88 ~d~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l 165 (177)
+|.... .++.... .+...+..... .+.|+++++||+|+............+.. ....+++++||+++.|++++
T Consensus 81 ~d~~~~v~~~~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~----~~~~~~~~~sa~~~~gv~~~ 155 (161)
T TIGR00231 81 FDIVILVLDVEEILEKQTKEIIHHAE-SNVPIILVGNKIDLRDAKLKTHVAFLFAK----LNGEPIIPLSAETGKNIDSA 155 (161)
T ss_pred EEEeeeehhhhhHhHHHHHHHHHhcc-cCCcEEEEEEcccCCcchhhHHHHHHHhh----ccCCceEEeecCCCCCHHHH
Confidence 999776 5555554 44444444332 27899999999999765422333333222 12236999999999999999
Q ss_pred HHHHH
Q 030429 166 IDWLI 170 (177)
Q Consensus 166 ~~~l~ 170 (177)
+++|.
T Consensus 156 ~~~l~ 160 (161)
T TIGR00231 156 FKIVE 160 (161)
T ss_pred HHHhh
Confidence 99874
|
This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model. |
| >PRK04213 GTP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.9e-26 Score=158.19 Aligned_cols=162 Identities=25% Similarity=0.286 Sum_probs=105.3
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEeCCEEEEEEecCC-----------chhhHHhHHHH
Q 030429 9 FKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGG-----------QRRFRTMWERY 77 (177)
Q Consensus 9 ~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g-----------~~~~~~~~~~~ 77 (177)
....++|+++|.+|+|||||++++.+..+.....++.......+..+ .+.+||||| ++.++..+..+
T Consensus 6 ~~~~~~i~i~G~~~~GKSsLin~l~~~~~~~~~~~~~t~~~~~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~ 83 (201)
T PRK04213 6 PDRKPEIVFVGRSNVGKSTLVRELTGKKVRVGKRPGVTRKPNHYDWG--DFILTDLPGFGFMSGVPKEVQEKIKDEIVRY 83 (201)
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCceeeCceEEeec--ceEEEeCCccccccccCHHHHHHHHHHHHHH
Confidence 34568999999999999999999998776544444333333333333 689999999 56666655555
Q ss_pred hc----CCCEEEEEEeCCCCCCHHH---------HHHHHHHHHcCCCCCCCcEEEEeeCCCccccc--CHHHHHHHhCcc
Q 030429 78 CR----GVSAILYVVDAADRDSVPI---------ARSELHELLMKPSLSGIPLLVLGNKIDKSEAL--SKQALVDQLGLE 142 (177)
Q Consensus 78 ~~----~~d~~i~v~d~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~--~~~~~~~~~~~~ 142 (177)
+. .++++++|+|.++...... ....+...... .++|+++|+||+|+.+.. ..+++.+.++..
T Consensus 84 ~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~ 160 (201)
T PRK04213 84 IEDNADRILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFLRE---LGIPPIVAVNKMDKIKNRDEVLDEIAERLGLY 160 (201)
T ss_pred HHhhhhhheEEEEEEeCccccccccccccCCCcHHHHHHHHHHHH---cCCCeEEEEECccccCcHHHHHHHHHHHhcCC
Confidence 43 4678889999865322100 01111222222 368999999999986543 223444444421
Q ss_pred ccc-CCceeEEEeeecCCCChHHHHHHHHHHhhhc
Q 030429 143 SIT-DREVCCYMISCKDSINIDAVIDWLIKHSKTA 176 (177)
Q Consensus 143 ~~~-~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~ 176 (177)
... ....+++++||++| |+++++++|.+.+.+.
T Consensus 161 ~~~~~~~~~~~~~SA~~g-gi~~l~~~l~~~~~~~ 194 (201)
T PRK04213 161 PPWRQWQDIIAPISAKKG-GIEELKEAIRKRLHEA 194 (201)
T ss_pred ccccccCCcEEEEecccC-CHHHHHHHHHHhhcCc
Confidence 111 11136899999999 9999999999987653
|
|
| >KOG0076 consensus GTP-binding ADP-ribosylation factor-like protein yARL3 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.4e-26 Score=149.90 Aligned_cols=171 Identities=31% Similarity=0.591 Sum_probs=147.4
Q ss_pred cccccceeEEEEEcCCCCCHHHHHHHHhcC-------CCCCCCCCccceeEEEEEeCCEEEEEEecCCchhhHHhHHHHh
Q 030429 6 SLFFKQEMELSLIGLQNAGKTSLVNTIATG-------GYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTMWERYC 78 (177)
Q Consensus 6 ~~~~~~~~~i~i~G~~~~GKSsli~~l~~~-------~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~ 78 (177)
.++.+..+.|+|+|..++|||||+.+.... --.....+|.+.+...+..++..+.+||.+|++..+++|..|+
T Consensus 11 ~~~~Ke~y~vlIlgldnAGKttfLe~~Kt~~~~~~~~l~~~ki~~tvgLnig~i~v~~~~l~fwdlgGQe~lrSlw~~yY 90 (197)
T KOG0076|consen 11 YMFKKEDYSVLILGLDNAGKTTFLEALKTDFSKAYGGLNPSKITPTVGLNIGTIEVCNAPLSFWDLGGQESLRSLWKKYY 90 (197)
T ss_pred HHhhhhhhhheeeccccCCchhHHHHHHHHHHhhhcCCCHHHeecccceeecceeeccceeEEEEcCChHHHHHHHHHHH
Confidence 356678899999999999999999998631 1234466788899999888899999999999999999999999
Q ss_pred cCCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccCHHHHHHHhCc-ccccCCceeEEEeeec
Q 030429 79 RGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGL-ESITDREVCCYMISCK 157 (177)
Q Consensus 79 ~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~Sa~ 157 (177)
..++++++++|+++++.++.....+..+.......+.|+++.+||.|+.+..+..++...++. .....+..++.++||.
T Consensus 91 ~~~H~ii~viDa~~~eR~~~~~t~~~~v~~~E~leg~p~L~lankqd~q~~~~~~El~~~~~~~e~~~~rd~~~~pvSal 170 (197)
T KOG0076|consen 91 WLAHGIIYVIDATDRERFEESKTAFEKVVENEKLEGAPVLVLANKQDLQNAMEAAELDGVFGLAELIPRRDNPFQPVSAL 170 (197)
T ss_pred HHhceeEEeecCCCHHHHHHHHHHHHHHHHHHHhcCCchhhhcchhhhhhhhhHHHHHHHhhhhhhcCCccCccccchhh
Confidence 999999999999999999999999999988877788999999999999988777777776663 2333456789999999
Q ss_pred CCCChHHHHHHHHHHhhhc
Q 030429 158 DSINIDAVIDWLIKHSKTA 176 (177)
Q Consensus 158 ~~~~i~~l~~~l~~~~~~~ 176 (177)
+|+||++-.+|++..+.+.
T Consensus 171 ~gegv~egi~w~v~~~~kn 189 (197)
T KOG0076|consen 171 TGEGVKEGIEWLVKKLEKN 189 (197)
T ss_pred hcccHHHHHHHHHHHHhhc
Confidence 9999999999999987764
|
|
| >TIGR02729 Obg_CgtA Obg family GTPase CgtA | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.5e-25 Score=162.18 Aligned_cols=166 Identities=20% Similarity=0.200 Sum_probs=119.7
Q ss_pred eecccccceeEEEEEcCCCCCHHHHHHHHhcCCCC--CCCCCccceeEEEEEeCC-EEEEEEecCCchhh-------HHh
Q 030429 4 HISLFFKQEMELSLIGLQNAGKTSLVNTIATGGYS--EDMIPTVGFNMRKVTKGN-VTIKLWDLGGQRRF-------RTM 73 (177)
Q Consensus 4 ~~~~~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~--~~~~~t~~~~~~~~~~~~-~~~~~~D~~g~~~~-------~~~ 73 (177)
...++.+.-..|+++|.|++|||||++++.+.... ....+|.......+..++ ..+.+||+||.... ...
T Consensus 149 ~~~lelk~~adV~lvG~pnaGKSTLl~~lt~~~~~va~y~fTT~~p~ig~v~~~~~~~~~i~D~PGli~~a~~~~gLg~~ 228 (329)
T TIGR02729 149 WLRLELKLLADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLVPNLGVVRVDDGRSFVIADIPGLIEGASEGAGLGHR 228 (329)
T ss_pred EEEEEeeccccEEEEcCCCCCHHHHHHHHhcCCccccCCCCCccCCEEEEEEeCCceEEEEEeCCCcccCCcccccHHHH
Confidence 45667777889999999999999999999976432 122345555666666666 89999999996421 122
Q ss_pred HHHHhcCCCEEEEEEeCCCC---CCHHHHHHHHHHHHcCC-CCCCCcEEEEeeCCCcccccCHHHHHHHhCcccccCCce
Q 030429 74 WERYCRGVSAILYVVDAADR---DSVPIARSELHELLMKP-SLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREV 149 (177)
Q Consensus 74 ~~~~~~~~d~~i~v~d~~~~---~~~~~~~~~~~~~~~~~-~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~ 149 (177)
...++..++++++|+|+++. ++++....|..++.... ....+|+++|+||+|+.+....++..+.+... ...
T Consensus 229 flrhierad~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~~~l~~kp~IIV~NK~DL~~~~~~~~~~~~l~~~----~~~ 304 (329)
T TIGR02729 229 FLKHIERTRVLLHLIDISPLDGRDPIEDYEIIRNELKKYSPELAEKPRIVVLNKIDLLDEEELAELLKELKKA----LGK 304 (329)
T ss_pred HHHHHHhhCEEEEEEcCccccccCHHHHHHHHHHHHHHhhhhhccCCEEEEEeCccCCChHHHHHHHHHHHHH----cCC
Confidence 23345679999999999976 67777777766664432 12468999999999997654444444333211 124
Q ss_pred eEEEeeecCCCChHHHHHHHHHHh
Q 030429 150 CCYMISCKDSINIDAVIDWLIKHS 173 (177)
Q Consensus 150 ~~~~~Sa~~~~~i~~l~~~l~~~~ 173 (177)
+++++||+++.|+++++++|.+.+
T Consensus 305 ~vi~iSAktg~GI~eL~~~I~~~l 328 (329)
T TIGR02729 305 PVFPISALTGEGLDELLYALAELL 328 (329)
T ss_pred cEEEEEccCCcCHHHHHHHHHHHh
Confidence 699999999999999999998865
|
This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal. |
| >KOG0097 consensus GTPase Rab14, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.2e-25 Score=141.29 Aligned_cols=160 Identities=21% Similarity=0.309 Sum_probs=129.4
Q ss_pred cccceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCcccee----EEEEEeCCEEEEEEecCCchhhHHhHHHHhcCCCE
Q 030429 8 FFKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFN----MRKVTKGNVTIKLWDLGGQRRFRTMWERYCRGVSA 83 (177)
Q Consensus 8 ~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~----~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ 83 (177)
....-+|-+++|+-|+|||+|+.++....|..+...|++.. ..++....+.+++|||+|+++|+...+.+++++..
T Consensus 7 nysyifkyiiigdmgvgkscllhqftekkfmadcphtigvefgtriievsgqkiklqiwdtagqerfravtrsyyrgaag 86 (215)
T KOG0097|consen 7 NYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAG 86 (215)
T ss_pred chhheEEEEEEccccccHHHHHHHHHHHHHhhcCCcccceecceeEEEecCcEEEEEEeecccHHHHHHHHHHHhccccc
Confidence 34567899999999999999999999999888877777643 34456677999999999999999999999999999
Q ss_pred EEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccC--HHHHHHHhCcccccCCceeEEEeeecCCCC
Q 030429 84 ILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALS--KQALVDQLGLESITDREVCCYMISCKDSIN 161 (177)
Q Consensus 84 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 161 (177)
+++|+|++.+..+..+..|+.+..... .++.-+++++||.|+....+ .++..+... ..+..++++||++|.|
T Consensus 87 almvyditrrstynhlsswl~dar~lt-npnt~i~lignkadle~qrdv~yeeak~fae-----engl~fle~saktg~n 160 (215)
T KOG0097|consen 87 ALMVYDITRRSTYNHLSSWLTDARNLT-NPNTVIFLIGNKADLESQRDVTYEEAKEFAE-----ENGLMFLEASAKTGQN 160 (215)
T ss_pred eeEEEEehhhhhhhhHHHHHhhhhccC-CCceEEEEecchhhhhhcccCcHHHHHHHHh-----hcCeEEEEecccccCc
Confidence 999999999999999999999885543 36677889999999975432 333333322 2334789999999999
Q ss_pred hHHHHHHHHHHh
Q 030429 162 IDAVIDWLIKHS 173 (177)
Q Consensus 162 i~~l~~~l~~~~ 173 (177)
+++.|-...+.+
T Consensus 161 vedafle~akki 172 (215)
T KOG0097|consen 161 VEDAFLETAKKI 172 (215)
T ss_pred HHHHHHHHHHHH
Confidence 999887666554
|
|
| >KOG0072 consensus GTP-binding ADP-ribosylation factor-like protein ARL1 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.5e-26 Score=145.40 Aligned_cols=171 Identities=35% Similarity=0.598 Sum_probs=151.6
Q ss_pred ccccc-ceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEeCCEEEEEEecCCchhhHHhHHHHhcCCCEE
Q 030429 6 SLFFK-QEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAI 84 (177)
Q Consensus 6 ~~~~~-~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~ 84 (177)
.++++ +..+|+++|--|+||+|++.++.-+ .....-|++++....+..++..+++||.+|+...+..|+.|+.+.|++
T Consensus 11 ~L~g~e~e~rililgldGaGkttIlyrlqvg-evvttkPtigfnve~v~yKNLk~~vwdLggqtSirPyWRcYy~dt~av 89 (182)
T KOG0072|consen 11 ALQGPEREMRILILGLDGAGKTTILYRLQVG-EVVTTKPTIGFNVETVPYKNLKFQVWDLGGQTSIRPYWRCYYADTDAV 89 (182)
T ss_pred HhcCCccceEEEEeeccCCCeeEEEEEcccC-cccccCCCCCcCccccccccccceeeEccCcccccHHHHHHhcccceE
Confidence 44555 8899999999999999999998533 333455888999999999999999999999999999999999999999
Q ss_pred EEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccCHHHHHHHhCcccccCCceeEEEeeecCCCChHH
Q 030429 85 LYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCKDSINIDA 164 (177)
Q Consensus 85 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 164 (177)
|+|+|.+|.+........+..++......+-.++++.||.|........+....++......+.+.+|.+||..|+|+++
T Consensus 90 IyVVDssd~dris~a~~el~~mL~E~eLq~a~llv~anKqD~~~~~t~~E~~~~L~l~~Lk~r~~~Iv~tSA~kg~Gld~ 169 (182)
T KOG0072|consen 90 IYVVDSSDRDRISIAGVELYSMLQEEELQHAKLLVFANKQDYSGALTRSEVLKMLGLQKLKDRIWQIVKTSAVKGEGLDP 169 (182)
T ss_pred EEEEeccchhhhhhhHHHHHHHhccHhhcCceEEEEeccccchhhhhHHHHHHHhChHHHhhheeEEEeeccccccCCcH
Confidence 99999999999998888888888887767777888899999988888888888898888888889999999999999999
Q ss_pred HHHHHHHHhhhcC
Q 030429 165 VIDWLIKHSKTAK 177 (177)
Q Consensus 165 l~~~l~~~~~~~~ 177 (177)
..+||.+.++.++
T Consensus 170 ~~DWL~~~l~~~~ 182 (182)
T KOG0072|consen 170 AMDWLQRPLKSRQ 182 (182)
T ss_pred HHHHHHHHHhccC
Confidence 9999999987653
|
|
| >cd00881 GTP_translation_factor GTP translation factor family | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.1e-24 Score=149.14 Aligned_cols=156 Identities=19% Similarity=0.207 Sum_probs=113.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCC------------------CCccceeEEEEEeCCEEEEEEecCCchhhHHhHH
Q 030429 14 ELSLIGLQNAGKTSLVNTIATGGYSEDM------------------IPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTMWE 75 (177)
Q Consensus 14 ~i~i~G~~~~GKSsli~~l~~~~~~~~~------------------~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~ 75 (177)
+|+++|.+|+|||||++++.+....... ..+...........+..+.+||+||+..+...+.
T Consensus 1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~ 80 (189)
T cd00881 1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFEWPDRRVNFIDTPGHEDFSSEVI 80 (189)
T ss_pred CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEEeeCCEEEEEEeCCCcHHHHHHHH
Confidence 5899999999999999999876554332 1222333344556678999999999998888888
Q ss_pred HHhcCCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccCHH----HHHHHhCcccc-------
Q 030429 76 RYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQ----ALVDQLGLESI------- 144 (177)
Q Consensus 76 ~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~----~~~~~~~~~~~------- 144 (177)
.++..+|++++|+|++++..... ..++..... .+.|+++|+||+|+....... ...+.++....
T Consensus 81 ~~~~~~d~~i~v~d~~~~~~~~~-~~~~~~~~~----~~~~i~iv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (189)
T cd00881 81 RGLSVSDGAILVVDANEGVQPQT-REHLRIARE----GGLPIIVAINKIDRVGEEDLEEVLREIKELLGLIGFISTKEEG 155 (189)
T ss_pred HHHHhcCEEEEEEECCCCCcHHH-HHHHHHHHH----CCCCeEEEEECCCCcchhcHHHHHHHHHHHHccccccchhhhh
Confidence 88999999999999987654332 233333322 478999999999998643332 23333332221
Q ss_pred --cCCceeEEEeeecCCCChHHHHHHHHHHhh
Q 030429 145 --TDREVCCYMISCKDSINIDAVIDWLIKHSK 174 (177)
Q Consensus 145 --~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~ 174 (177)
.....+++++||++|.|++++++++.+.+.
T Consensus 156 ~~~~~~~~v~~~Sa~~g~gi~~l~~~l~~~l~ 187 (189)
T cd00881 156 TRNGLLVPIVPGSALTGIGVEELLEAIVEHLP 187 (189)
T ss_pred cccCCcceEEEEecccCcCHHHHHHHHHhhCC
Confidence 224578999999999999999999998875
|
This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function. |
| >TIGR03156 GTP_HflX GTP-binding protein HflX | Back alignment and domain information |
|---|
Probab=99.93 E-value=9.4e-25 Score=161.82 Aligned_cols=151 Identities=23% Similarity=0.268 Sum_probs=109.4
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhcCCCC--CCCCCccceeEEEEEe-CCEEEEEEecCCc---------hhhHHhHHHHh
Q 030429 11 QEMELSLIGLQNAGKTSLVNTIATGGYS--EDMIPTVGFNMRKVTK-GNVTIKLWDLGGQ---------RRFRTMWERYC 78 (177)
Q Consensus 11 ~~~~i~i~G~~~~GKSsli~~l~~~~~~--~~~~~t~~~~~~~~~~-~~~~~~~~D~~g~---------~~~~~~~~~~~ 78 (177)
..++|+++|.+|+|||||+|+|++.... ....+|.......+.. ++..+.+|||||. +.|...+ ..+
T Consensus 188 ~~~~ValvG~~NvGKSSLln~L~~~~~~v~~~~~tT~d~~~~~i~~~~~~~i~l~DT~G~~~~l~~~lie~f~~tl-e~~ 266 (351)
T TIGR03156 188 DVPTVALVGYTNAGKSTLFNALTGADVYAADQLFATLDPTTRRLDLPDGGEVLLTDTVGFIRDLPHELVAAFRATL-EEV 266 (351)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCceeeccCCccccCCEEEEEEeCCCceEEEEecCcccccCCHHHHHHHHHHH-HHH
Confidence 4489999999999999999999987643 2334566666677766 5689999999996 2233322 347
Q ss_pred cCCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccCHHHHHHHhCcccccCCceeEEEeeecC
Q 030429 79 RGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCKD 158 (177)
Q Consensus 79 ~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 158 (177)
.++|++++|+|++++.+.+....+...+ ......++|+++|+||+|+.+..... .... ...+++++||++
T Consensus 267 ~~ADlil~VvD~s~~~~~~~~~~~~~~L-~~l~~~~~piIlV~NK~Dl~~~~~v~---~~~~------~~~~~i~iSAkt 336 (351)
T TIGR03156 267 READLLLHVVDASDPDREEQIEAVEKVL-EELGAEDIPQLLVYNKIDLLDEPRIE---RLEE------GYPEAVFVSAKT 336 (351)
T ss_pred HhCCEEEEEEECCCCchHHHHHHHHHHH-HHhccCCCCEEEEEEeecCCChHhHH---HHHh------CCCCEEEEEccC
Confidence 7899999999999988777665443332 33233468999999999997542221 1111 112589999999
Q ss_pred CCChHHHHHHHHHH
Q 030429 159 SINIDAVIDWLIKH 172 (177)
Q Consensus 159 ~~~i~~l~~~l~~~ 172 (177)
|.|+++++++|.+.
T Consensus 337 g~GI~eL~~~I~~~ 350 (351)
T TIGR03156 337 GEGLDLLLEAIAER 350 (351)
T ss_pred CCCHHHHHHHHHhh
Confidence 99999999999765
|
This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like). |
| >cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.5e-24 Score=149.51 Aligned_cols=148 Identities=24% Similarity=0.278 Sum_probs=101.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHhc--CCCCCCC----------------CCccceeEEEEEeCCEEEEEEecCCchhhHHhH
Q 030429 13 MELSLIGLQNAGKTSLVNTIAT--GGYSEDM----------------IPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTMW 74 (177)
Q Consensus 13 ~~i~i~G~~~~GKSsli~~l~~--~~~~~~~----------------~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~ 74 (177)
-+|+++|.+++|||||+++|++ +.+.... ..+.......+..++..+++|||||+.+|...+
T Consensus 3 r~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~ 82 (194)
T cd01891 3 RNIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVTYKDTKINIVDTPGHADFGGEV 82 (194)
T ss_pred cEEEEEecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeEEEECCEEEEEEECCCcHHHHHHH
Confidence 4899999999999999999996 4443321 112223334466778999999999999999999
Q ss_pred HHHhcCCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccC---HHHHHHHhCccc--ccCCce
Q 030429 75 ERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALS---KQALVDQLGLES--ITDREV 149 (177)
Q Consensus 75 ~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~---~~~~~~~~~~~~--~~~~~~ 149 (177)
..+++.+|++++|+|+++.. ......++..... .++|+++|+||+|+.+... .++..+.+.... ......
T Consensus 83 ~~~~~~~d~~ilV~d~~~~~-~~~~~~~~~~~~~----~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (194)
T cd01891 83 ERVLSMVDGVLLLVDASEGP-MPQTRFVLKKALE----LGLKPIVVINKIDRPDARPEEVVDEVFDLFIELGATEEQLDF 157 (194)
T ss_pred HHHHHhcCEEEEEEECCCCc-cHHHHHHHHHHHH----cCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHhCCccccCcc
Confidence 99999999999999998742 3333334443322 3689999999999965322 122222221111 112256
Q ss_pred eEEEeeecCCCChHHH
Q 030429 150 CCYMISCKDSINIDAV 165 (177)
Q Consensus 150 ~~~~~Sa~~~~~i~~l 165 (177)
+++++||++|.|+.++
T Consensus 158 ~iv~~Sa~~g~~~~~~ 173 (194)
T cd01891 158 PVLYASAKNGWASLNL 173 (194)
T ss_pred CEEEeehhcccccccc
Confidence 8999999999776433
|
BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co |
| >KOG0074 consensus GTP-binding ADP-ribosylation factor-like protein ARL3 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.5e-25 Score=140.54 Aligned_cols=165 Identities=30% Similarity=0.538 Sum_probs=149.7
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEeCC-EEEEEEecCCchhhHHhHHHHhcCCCEEEEE
Q 030429 9 FKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTKGN-VTIKLWDLGGQRRFRTMWERYCRGVSAILYV 87 (177)
Q Consensus 9 ~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v 87 (177)
.++.+||+++|-.++|||||+..|. +.-.+...+|.++.+..++..+ ..+++||++|+...+..|..|+...|.+|+|
T Consensus 14 t~rEirilllGldnAGKTT~LKqL~-sED~~hltpT~GFn~k~v~~~g~f~LnvwDiGGqr~IRpyWsNYyenvd~lIyV 92 (185)
T KOG0074|consen 14 TRREIRILLLGLDNAGKTTFLKQLK-SEDPRHLTPTNGFNTKKVEYDGTFHLNVWDIGGQRGIRPYWSNYYENVDGLIYV 92 (185)
T ss_pred CcceEEEEEEecCCCcchhHHHHHc-cCChhhccccCCcceEEEeecCcEEEEEEecCCccccchhhhhhhhccceEEEE
Confidence 4788999999999999999999997 4445567789999999998766 9999999999999999999999999999999
Q ss_pred EeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccCHHHHHHHhCcccccCCceeEEEeeecCCCChHHHHH
Q 030429 88 VDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCKDSINIDAVID 167 (177)
Q Consensus 88 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~ 167 (177)
+|.+|...|+++...+.++++.......|+++..||.|+.-....++....+.......+.+.+.+|||..++|+.+-.+
T Consensus 93 IDS~D~krfeE~~~el~ELleeeKl~~vpvlIfankQdlltaa~~eeia~klnl~~lrdRswhIq~csals~eg~~dg~~ 172 (185)
T KOG0074|consen 93 IDSTDEKRFEEISEELVELLEEEKLAEVPVLIFANKQDLLTAAKVEEIALKLNLAGLRDRSWHIQECSALSLEGSTDGSD 172 (185)
T ss_pred EeCCchHhHHHHHHHHHHHhhhhhhhccceeehhhhhHHHhhcchHHHHHhcchhhhhhceEEeeeCccccccCccCcch
Confidence 99999999999999999999988888899999999999988878888888888888888899999999999999999999
Q ss_pred HHHHHhh
Q 030429 168 WLIKHSK 174 (177)
Q Consensus 168 ~l~~~~~ 174 (177)
|+.....
T Consensus 173 wv~sn~~ 179 (185)
T KOG0074|consen 173 WVQSNPE 179 (185)
T ss_pred hhhcCCC
Confidence 8887654
|
|
| >TIGR02528 EutP ethanolamine utilization protein, EutP | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.6e-25 Score=145.96 Aligned_cols=134 Identities=22% Similarity=0.223 Sum_probs=91.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEeCCEEEEEEecCCch-----hhHHhHHHHhcCCCEEEEEE
Q 030429 14 ELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQR-----RFRTMWERYCRGVSAILYVV 88 (177)
Q Consensus 14 ~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~-----~~~~~~~~~~~~~d~~i~v~ 88 (177)
||+++|++|||||||++++.+..+. +.+|.+ .+... .+|||||+. .+.... ..++++|++++|+
T Consensus 2 kv~liG~~~vGKSsL~~~l~~~~~~--~~~t~~-----~~~~~---~~iDt~G~~~~~~~~~~~~~-~~~~~ad~vilv~ 70 (142)
T TIGR02528 2 RIMFIGSVGCGKTTLTQALQGEEIL--YKKTQA-----VEYND---GAIDTPGEYVENRRLYSALI-VTAADADVIALVQ 70 (142)
T ss_pred eEEEECCCCCCHHHHHHHHcCCccc--ccccee-----EEEcC---eeecCchhhhhhHHHHHHHH-HHhhcCCEEEEEe
Confidence 8999999999999999999876542 222322 22222 689999972 333333 3478999999999
Q ss_pred eCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccc-CHHHHHHHhCcccccCCceeEEEeeecCCCChHHHHH
Q 030429 89 DAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEAL-SKQALVDQLGLESITDREVCCYMISCKDSINIDAVID 167 (177)
Q Consensus 89 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~ 167 (177)
|++++.++... .| .... ..|+++|+||+|+.+.. ..++..+..... ...+++++||++|.|++++|+
T Consensus 71 d~~~~~s~~~~-~~-~~~~------~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~----~~~~~~~~Sa~~~~gi~~l~~ 138 (142)
T TIGR02528 71 SATDPESRFPP-GF-ASIF------VKPVIGLVTKIDLAEADVDIERAKELLETA----GAEPIFEISSVDEQGLEALVD 138 (142)
T ss_pred cCCCCCcCCCh-hH-HHhc------cCCeEEEEEeeccCCcccCHHHHHHHHHHc----CCCcEEEEecCCCCCHHHHHH
Confidence 99999887552 22 2221 24999999999986532 222222222111 112689999999999999999
Q ss_pred HHH
Q 030429 168 WLI 170 (177)
Q Consensus 168 ~l~ 170 (177)
++.
T Consensus 139 ~l~ 141 (142)
T TIGR02528 139 YLN 141 (142)
T ss_pred HHh
Confidence 874
|
This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site. |
| >cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.4e-24 Score=143.29 Aligned_cols=144 Identities=19% Similarity=0.183 Sum_probs=106.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCC---CCCCCccceeEEEEEeCCEEEEEEecCCchhhHH--------hHHHHhcCC
Q 030429 13 MELSLIGLQNAGKTSLVNTIATGGYS---EDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRT--------MWERYCRGV 81 (177)
Q Consensus 13 ~~i~i~G~~~~GKSsli~~l~~~~~~---~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~--------~~~~~~~~~ 81 (177)
++|+++|++|+|||||++++.+.... .....+.......+...+..+.+|||||...+.. .....+..+
T Consensus 2 ~~i~l~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~ 81 (157)
T cd04164 2 IKVVIVGKPNVGKSSLLNALAGRDRAIVSDIAGTTRDVIEESIDIGGIPVRLIDTAGIRETEDEIEKIGIERAREAIEEA 81 (157)
T ss_pred cEEEEECCCCCCHHHHHHHHHCCceEeccCCCCCccceEEEEEEeCCEEEEEEECCCcCCCcchHHHHHHHHHHHHHhhC
Confidence 68999999999999999999976532 1222233344445666788999999999654432 122456789
Q ss_pred CEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccCHHHHHHHhCcccccCCceeEEEeeecCCCC
Q 030429 82 SAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCKDSIN 161 (177)
Q Consensus 82 d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 161 (177)
|++++|+|++++.+......+.. ..+.|+++|+||+|+.+.... .......+++++||+++.|
T Consensus 82 ~~~v~v~d~~~~~~~~~~~~~~~-------~~~~~vi~v~nK~D~~~~~~~----------~~~~~~~~~~~~Sa~~~~~ 144 (157)
T cd04164 82 DLVLFVIDASRGLDEEDLEILEL-------PADKPIIVVLNKSDLLPDSEL----------LSLLAGKPIIAISAKTGEG 144 (157)
T ss_pred CEEEEEEECCCCCCHHHHHHHHh-------hcCCCEEEEEEchhcCCcccc----------ccccCCCceEEEECCCCCC
Confidence 99999999998877766544332 247899999999999765432 1122244799999999999
Q ss_pred hHHHHHHHHHHh
Q 030429 162 IDAVIDWLIKHS 173 (177)
Q Consensus 162 i~~l~~~l~~~~ 173 (177)
+++++++|.+.+
T Consensus 145 v~~l~~~l~~~~ 156 (157)
T cd04164 145 LDELKEALLELA 156 (157)
T ss_pred HHHHHHHHHHhh
Confidence 999999998765
|
It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance. |
| >PLN00023 GTP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=8.9e-25 Score=157.77 Aligned_cols=123 Identities=21% Similarity=0.363 Sum_probs=104.0
Q ss_pred ccccceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEE--EEEe---------------CCEEEEEEecCCchh
Q 030429 7 LFFKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMR--KVTK---------------GNVTIKLWDLGGQRR 69 (177)
Q Consensus 7 ~~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~--~~~~---------------~~~~~~~~D~~g~~~ 69 (177)
......+||+++|..|||||||++++.++.+...+.+|++.... .+.. ..+.+++|||+|+++
T Consensus 16 ~~~~~~iKIVLLGdsGVGKTSLI~rf~~g~F~~~~~pTIG~d~~ik~I~~~~~~~~~~~ik~d~~k~v~LqIWDTAGqEr 95 (334)
T PLN00023 16 GPPCGQVRVLVVGDSGVGKSSLVHLIVKGSSIARPPQTIGCTVGVKHITYGSPGSSSNSIKGDSERDFFVELWDVSGHER 95 (334)
T ss_pred CCCccceEEEEECCCCCcHHHHHHHHhcCCcccccCCceeeeEEEEEEEECCcccccccccccCCceEEEEEEECCCChh
Confidence 44567799999999999999999999999888888888876543 2332 247799999999999
Q ss_pred hHHhHHHHhcCCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCC-----------CCCCcEEEEeeCCCcccc
Q 030429 70 FRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPS-----------LSGIPLLVLGNKIDKSEA 129 (177)
Q Consensus 70 ~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~iiv~nK~D~~~~ 129 (177)
|..++..++++++++|+|||++++.+++++..|+..+..... ...+|+++|+||+|+.+.
T Consensus 96 frsL~~~yyr~AdgiILVyDITdr~SFenL~kWl~eI~~~~~~s~p~~s~~~~~~~ipIILVGNK~DL~~~ 166 (334)
T PLN00023 96 YKDCRSLFYSQINGVIFVHDLSQRRTKTSLQKWASEVAATGTFSAPLGSGGPGGLPVPYIVIGNKADIAPK 166 (334)
T ss_pred hhhhhHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcccccccccccccCCCCcEEEEEECcccccc
Confidence 999999999999999999999999999999999998876421 135899999999998653
|
|
| >cd01889 SelB_euk SelB subfamily | Back alignment and domain information |
|---|
Probab=99.93 E-value=8.3e-25 Score=150.49 Aligned_cols=157 Identities=18% Similarity=0.125 Sum_probs=104.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcC----CCCCC-----CCCccceeEEEEEeC--------------CEEEEEEecCCchh
Q 030429 13 MELSLIGLQNAGKTSLVNTIATG----GYSED-----MIPTVGFNMRKVTKG--------------NVTIKLWDLGGQRR 69 (177)
Q Consensus 13 ~~i~i~G~~~~GKSsli~~l~~~----~~~~~-----~~~t~~~~~~~~~~~--------------~~~~~~~D~~g~~~ 69 (177)
+||+++|++++|||||+++|++. .+... ...|.+.....+... +..+.+|||||+..
T Consensus 1 ~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~ 80 (192)
T cd01889 1 VNVGVLGHVDSGKTSLAKALSEIASTAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQITLVDCPGHAS 80 (192)
T ss_pred CeEEEEecCCCCHHHHHHHHHhccchhhhccCHHHHHcCCeeeecceEEEecccccccccccccccCceEEEEECCCcHH
Confidence 58999999999999999999862 11111 123444443333322 68999999999977
Q ss_pred hHHhHHHHhcCCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccCHH----HHHHHhCccc--
Q 030429 70 FRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQ----ALVDQLGLES-- 143 (177)
Q Consensus 70 ~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~----~~~~~~~~~~-- 143 (177)
+..........+|++++|+|+++.........+. +... .+.|+++|+||+|+......+ +..+.+....
T Consensus 81 ~~~~~~~~~~~~d~vi~VvD~~~~~~~~~~~~~~--~~~~---~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~l~~~~~~ 155 (192)
T cd01889 81 LIRTIIGGAQIIDLMLLVVDATKGIQTQTAECLV--IGEI---LCKKLIVVLNKIDLIPEEERERKIEKMKKKLQKTLEK 155 (192)
T ss_pred HHHHHHHHHhhCCEEEEEEECCCCccHHHHHHHH--HHHH---cCCCEEEEEECcccCCHHHHHHHHHHHHHHHHHHHHh
Confidence 6555545567789999999998754433322221 1121 256999999999987543322 2222221111
Q ss_pred ccCCceeEEEeeecCCCChHHHHHHHHHHhh
Q 030429 144 ITDREVCCYMISCKDSINIDAVIDWLIKHSK 174 (177)
Q Consensus 144 ~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~ 174 (177)
....+.+++++||++|.|+++|++.|.+.+.
T Consensus 156 ~~~~~~~vi~iSa~~g~gi~~L~~~l~~~~~ 186 (192)
T cd01889 156 TRFKNSPIIPVSAKPGGGEAELGKDLNNLIV 186 (192)
T ss_pred cCcCCCCEEEEeccCCCCHHHHHHHHHhccc
Confidence 1124568999999999999999999988764
|
SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk |
| >cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1 | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.6e-25 Score=150.09 Aligned_cols=153 Identities=25% Similarity=0.261 Sum_probs=107.0
Q ss_pred EEcCCCCCHHHHHHHHhcCCC--CCCCCCccceeEEEEEeC-CEEEEEEecCCchhh----HH---hHHHHhcCCCEEEE
Q 030429 17 LIGLQNAGKTSLVNTIATGGY--SEDMIPTVGFNMRKVTKG-NVTIKLWDLGGQRRF----RT---MWERYCRGVSAILY 86 (177)
Q Consensus 17 i~G~~~~GKSsli~~l~~~~~--~~~~~~t~~~~~~~~~~~-~~~~~~~D~~g~~~~----~~---~~~~~~~~~d~~i~ 86 (177)
++|++|||||||++++.+... ......|.......+..+ +..+.+|||||.... .. .....+..+|++++
T Consensus 1 iiG~~~~GKStll~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~d~ii~ 80 (176)
T cd01881 1 LVGLPNVGKSTLLNALTNAKPKVANYPFTTLEPNLGVVEVPDGARIQVADIPGLIEGASEGRGLGNQFLAHIRRADAILH 80 (176)
T ss_pred CCCCCCCcHHHHHHHHhcCCccccCCCceeecCcceEEEcCCCCeEEEEeccccchhhhcCCCccHHHHHHHhccCEEEE
Confidence 589999999999999997754 222233444444555566 889999999996321 11 22345778999999
Q ss_pred EEeCCCC------CCHHHHHHHHHHHHcCCC------CCCCcEEEEeeCCCcccccCHHHHHHHhCcccccCCceeEEEe
Q 030429 87 VVDAADR------DSVPIARSELHELLMKPS------LSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMI 154 (177)
Q Consensus 87 v~d~~~~------~~~~~~~~~~~~~~~~~~------~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (177)
|+|++++ .++.....+...+..... ..++|+++|+||+|+.......+.... ........+++++
T Consensus 81 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~---~~~~~~~~~~~~~ 157 (176)
T cd01881 81 VVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTAKPVIYVLNKIDLDDAEELEEELVR---ELALEEGAEVVPI 157 (176)
T ss_pred EEeccCCccccccCHHHHHHHHHHHHHHhhhhhHHHHHhhCCeEEEEEchhcCchhHHHHHHHH---HHhcCCCCCEEEE
Confidence 9999988 467777667666654432 146899999999999765443332111 1112234469999
Q ss_pred eecCCCChHHHHHHHHHH
Q 030429 155 SCKDSINIDAVIDWLIKH 172 (177)
Q Consensus 155 Sa~~~~~i~~l~~~l~~~ 172 (177)
||+++.|++++++++...
T Consensus 158 Sa~~~~gl~~l~~~l~~~ 175 (176)
T cd01881 158 SAKTEEGLDELIRAIYEL 175 (176)
T ss_pred ehhhhcCHHHHHHHHHhh
Confidence 999999999999998764
|
Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to |
| >PRK05291 trmE tRNA modification GTPase TrmE; Reviewed | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.3e-24 Score=165.95 Aligned_cols=147 Identities=19% Similarity=0.218 Sum_probs=110.2
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcCCC---CCCCCCccceeEEEEEeCCEEEEEEecCCchhhHHh--------HHHHh
Q 030429 10 KQEMELSLIGLQNAGKTSLVNTIATGGY---SEDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTM--------WERYC 78 (177)
Q Consensus 10 ~~~~~i~i~G~~~~GKSsli~~l~~~~~---~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~--------~~~~~ 78 (177)
+..++|+++|.+|+|||||+|++++... ......|.......+..++..+.+|||||...+... ...++
T Consensus 213 ~~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g~~i~l~DT~G~~~~~~~ie~~gi~~~~~~~ 292 (449)
T PRK05291 213 REGLKVVIAGRPNVGKSSLLNALLGEERAIVTDIAGTTRDVIEEHINLDGIPLRLIDTAGIRETDDEVEKIGIERSREAI 292 (449)
T ss_pred hcCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcccccEEEEEEECCeEEEEEeCCCCCCCccHHHHHHHHHHHHHH
Confidence 4568999999999999999999997653 222333444555667778899999999997654332 22357
Q ss_pred cCCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccCHHHHHHHhCcccccCCceeEEEeeecC
Q 030429 79 RGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCKD 158 (177)
Q Consensus 79 ~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 158 (177)
..+|++++|+|++++.+.+....| .. ..+.|+++|+||+|+.+..... .....+++++||++
T Consensus 293 ~~aD~il~VvD~s~~~s~~~~~~l-~~------~~~~piiiV~NK~DL~~~~~~~-----------~~~~~~~i~iSAkt 354 (449)
T PRK05291 293 EEADLVLLVLDASEPLTEEDDEIL-EE------LKDKPVIVVLNKADLTGEIDLE-----------EENGKPVIRISAKT 354 (449)
T ss_pred HhCCEEEEEecCCCCCChhHHHHH-Hh------cCCCCcEEEEEhhhccccchhh-----------hccCCceEEEEeeC
Confidence 889999999999998877654332 22 2468999999999997643221 11233689999999
Q ss_pred CCChHHHHHHHHHHhh
Q 030429 159 SINIDAVIDWLIKHSK 174 (177)
Q Consensus 159 ~~~i~~l~~~l~~~~~ 174 (177)
|.|+++++++|.+.+.
T Consensus 355 g~GI~~L~~~L~~~l~ 370 (449)
T PRK05291 355 GEGIDELREAIKELAF 370 (449)
T ss_pred CCCHHHHHHHHHHHHh
Confidence 9999999999998765
|
|
| >TIGR03594 GTPase_EngA ribosome-associated GTPase EngA | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.7e-24 Score=165.60 Aligned_cols=160 Identities=19% Similarity=0.155 Sum_probs=111.8
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcCCC---CCCCCCccceeEEEEEeCCEEEEEEecCCchhhHHh-----------HH
Q 030429 10 KQEMELSLIGLQNAGKTSLVNTIATGGY---SEDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTM-----------WE 75 (177)
Q Consensus 10 ~~~~~i~i~G~~~~GKSsli~~l~~~~~---~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~-----------~~ 75 (177)
...++|+++|.+|+|||||++++++... ......|.......+..++..+.+|||||..++... ..
T Consensus 170 ~~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~e~~~~~~~~ 249 (429)
T TIGR03594 170 DGPIKIAIIGRPNVGKSTLVNALLGEERVIVSDIAGTTRDSIDIPFERNGKKYLLIDTAGIRRKGKVTEGVEKYSVLRTL 249 (429)
T ss_pred CCceEEEEECCCCCCHHHHHHHHHCCCeeecCCCCCceECcEeEEEEECCcEEEEEECCCccccccchhhHHHHHHHHHH
Confidence 3458999999999999999999997652 222223333344455667779999999996543211 12
Q ss_pred HHhcCCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcc-cccCHHHHHHHhCcccccCCceeEEEe
Q 030429 76 RYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKS-EALSKQALVDQLGLESITDREVCCYMI 154 (177)
Q Consensus 76 ~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (177)
.+++.+|++++|+|++++.+.... ..+..... .+.|+++|+||+|+. +....++..+.+..........+++++
T Consensus 250 ~~~~~ad~~ilV~D~~~~~~~~~~-~~~~~~~~----~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vi~~ 324 (429)
T TIGR03594 250 KAIERADVVLLVLDATEGITEQDL-RIAGLILE----AGKALVIVVNKWDLVKDEKTREEFKKELRRKLPFLDFAPIVFI 324 (429)
T ss_pred HHHHhCCEEEEEEECCCCccHHHH-HHHHHHHH----cCCcEEEEEECcccCCCHHHHHHHHHHHHHhcccCCCCceEEE
Confidence 357889999999999987665543 23333322 368999999999997 333334444444333333345789999
Q ss_pred eecCCCChHHHHHHHHHHhh
Q 030429 155 SCKDSINIDAVIDWLIKHSK 174 (177)
Q Consensus 155 Sa~~~~~i~~l~~~l~~~~~ 174 (177)
||++|.|++++|+++.+...
T Consensus 325 SA~~g~~v~~l~~~i~~~~~ 344 (429)
T TIGR03594 325 SALTGQGVDKLLDAIDEVYE 344 (429)
T ss_pred eCCCCCCHHHHHHHHHHHHH
Confidence 99999999999999988654
|
EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability. |
| >cd00882 Ras_like_GTPase Ras-like GTPase superfamily | Back alignment and domain information |
|---|
Probab=99.93 E-value=8.5e-25 Score=144.10 Aligned_cols=151 Identities=28% Similarity=0.458 Sum_probs=112.9
Q ss_pred EEcCCCCCHHHHHHHHhcCCC-CCCCCCccceeEEEEEeC----CEEEEEEecCCchhhHHhHHHHhcCCCEEEEEEeCC
Q 030429 17 LIGLQNAGKTSLVNTIATGGY-SEDMIPTVGFNMRKVTKG----NVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAA 91 (177)
Q Consensus 17 i~G~~~~GKSsli~~l~~~~~-~~~~~~t~~~~~~~~~~~----~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~ 91 (177)
++|++|+|||||++++.+... .....++. ......... +..+.+||+||+..+.......++.+|++++|+|++
T Consensus 1 iiG~~~~GKStl~~~l~~~~~~~~~~~~t~-~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~ 79 (157)
T cd00882 1 VVGDSGVGKTSLLNRLLGGEFVPEEYETTI-IDFYSKTIEVDGKKVKLQIWDTAGQERFRSLRRLYYRGADGIILVYDVT 79 (157)
T ss_pred CCCcCCCcHHHHHHHHHhCCcCCcccccch-hheeeEEEEECCEEEEEEEEecCChHHHHhHHHHHhcCCCEEEEEEECc
Confidence 589999999999999997766 34444444 444443333 688999999999988887788899999999999999
Q ss_pred CCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccCHHHHHHHhCcccccCCceeEEEeeecCCCChHHHHHHHH
Q 030429 92 DRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCKDSINIDAVIDWLI 170 (177)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~ 170 (177)
++.+......++..........+.|+++++||+|.......+..... .........+++++|+.++.|+++++++|.
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nk~D~~~~~~~~~~~~~--~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~ 156 (157)
T cd00882 80 DRESFENVKEWLLLILINKEGENIPIILVGNKIDLPEERVVSEEELA--EQLAKELGVPYFETSAKTGENVEELFEELA 156 (157)
T ss_pred CHHHHHHHHHHHHHHHHhhccCCCcEEEEEeccccccccchHHHHHH--HHHHhhcCCcEEEEecCCCCChHHHHHHHh
Confidence 98888888777444444444567999999999999765443332100 011122345799999999999999999986
|
The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb |
| >TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE | Back alignment and domain information |
|---|
Probab=99.93 E-value=4.3e-24 Score=162.42 Aligned_cols=151 Identities=23% Similarity=0.296 Sum_probs=109.0
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHhcCCC--CCCC-CCccceeEEEEEeCCEEEEEEecCCchhhHHh--------HHHH
Q 030429 9 FKQEMELSLIGLQNAGKTSLVNTIATGGY--SEDM-IPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTM--------WERY 77 (177)
Q Consensus 9 ~~~~~~i~i~G~~~~GKSsli~~l~~~~~--~~~~-~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~--------~~~~ 77 (177)
.+..++|+++|++|+|||||+|+|++... .... ..|.......+..++..+.+|||||...+... ...+
T Consensus 200 ~~~g~kVvIvG~~nvGKSSLiN~L~~~~~aivs~~pgtTrd~~~~~i~~~g~~v~l~DTaG~~~~~~~ie~~gi~~~~~~ 279 (442)
T TIGR00450 200 LDDGFKLAIVGSPNVGKSSLLNALLKQDRAIVSDIKGTTRDVVEGDFELNGILIKLLDTAGIREHADFVERLGIEKSFKA 279 (442)
T ss_pred hhcCCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcEEEEEEEEEEECCEEEEEeeCCCcccchhHHHHHHHHHHHHH
Confidence 35678999999999999999999997642 2222 22334444556778899999999998654432 2346
Q ss_pred hcCCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccCHHHHHHHhCcccccCCceeEEEeeec
Q 030429 78 CRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCK 157 (177)
Q Consensus 78 ~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 157 (177)
++.+|++++|+|++++.+.+.. |+..+.. .+.|+++|+||+|+.+. +.+.+.+.+ +.+++++||+
T Consensus 280 ~~~aD~il~V~D~s~~~s~~~~--~l~~~~~----~~~piIlV~NK~Dl~~~-~~~~~~~~~--------~~~~~~vSak 344 (442)
T TIGR00450 280 IKQADLVIYVLDASQPLTKDDF--LIIDLNK----SKKPFILVLNKIDLKIN-SLEFFVSSK--------VLNSSNLSAK 344 (442)
T ss_pred HhhCCEEEEEEECCCCCChhHH--HHHHHhh----CCCCEEEEEECccCCCc-chhhhhhhc--------CCceEEEEEe
Confidence 7889999999999998877664 5554422 36899999999999654 222222111 2368899999
Q ss_pred CCCChHHHHHHHHHHhhh
Q 030429 158 DSINIDAVIDWLIKHSKT 175 (177)
Q Consensus 158 ~~~~i~~l~~~l~~~~~~ 175 (177)
+ .|++++++.|.+.+.+
T Consensus 345 ~-~gI~~~~~~L~~~i~~ 361 (442)
T TIGR00450 345 Q-LKIKALVDLLTQKINA 361 (442)
T ss_pred c-CCHHHHHHHHHHHHHH
Confidence 8 6899999998887653
|
TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer. |
| >PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.8e-24 Score=141.07 Aligned_cols=142 Identities=26% Similarity=0.318 Sum_probs=103.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCC--CCCCccceeEEEEEeCCEEEEEEecCCchh------hHHhHHHHh--cCCC
Q 030429 13 MELSLIGLQNAGKTSLVNTIATGGYSE--DMIPTVGFNMRKVTKGNVTIKLWDLGGQRR------FRTMWERYC--RGVS 82 (177)
Q Consensus 13 ~~i~i~G~~~~GKSsli~~l~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~------~~~~~~~~~--~~~d 82 (177)
++|+++|.|+||||||+|+|++..... ..+.|.+.....+..++..+.++|+||.-. .......++ .+.|
T Consensus 1 i~ialvG~PNvGKStLfN~Ltg~~~~v~n~pG~Tv~~~~g~~~~~~~~~~lvDlPG~ysl~~~s~ee~v~~~~l~~~~~D 80 (156)
T PF02421_consen 1 IRIALVGNPNVGKSTLFNALTGAKQKVGNWPGTTVEKKEGIFKLGDQQVELVDLPGIYSLSSKSEEERVARDYLLSEKPD 80 (156)
T ss_dssp -EEEEEESTTSSHHHHHHHHHTTSEEEEESTTSSSEEEEEEEEETTEEEEEEE----SSSSSSSHHHHHHHHHHHHTSSS
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCceecCCCCCCeeeeeEEEEecCceEEEEECCCcccCCCCCcHHHHHHHHHhhcCCC
Confidence 589999999999999999999776432 244566677777888899999999999321 122333343 6899
Q ss_pred EEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccC----HHHHHHHhCcccccCCceeEEEeeecC
Q 030429 83 AILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALS----KQALVDQLGLESITDREVCCYMISCKD 158 (177)
Q Consensus 83 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 158 (177)
+++.|+|+++ ++........+.+. ++|+++|+||+|...... .+.+.+.++. +++++||++
T Consensus 81 ~ii~VvDa~~---l~r~l~l~~ql~e~----g~P~vvvlN~~D~a~~~g~~id~~~Ls~~Lg~--------pvi~~sa~~ 145 (156)
T PF02421_consen 81 LIIVVVDATN---LERNLYLTLQLLEL----GIPVVVVLNKMDEAERKGIEIDAEKLSERLGV--------PVIPVSART 145 (156)
T ss_dssp EEEEEEEGGG---HHHHHHHHHHHHHT----TSSEEEEEETHHHHHHTTEEE-HHHHHHHHTS---------EEEEBTTT
T ss_pred EEEEECCCCC---HHHHHHHHHHHHHc----CCCEEEEEeCHHHHHHcCCEECHHHHHHHhCC--------CEEEEEeCC
Confidence 9999999976 44444455555544 799999999999876433 4566666653 799999999
Q ss_pred CCChHHHHHHH
Q 030429 159 SINIDAVIDWL 169 (177)
Q Consensus 159 ~~~i~~l~~~l 169 (177)
+.|++++++.|
T Consensus 146 ~~g~~~L~~~I 156 (156)
T PF02421_consen 146 GEGIDELKDAI 156 (156)
T ss_dssp TBTHHHHHHHH
T ss_pred CcCHHHHHhhC
Confidence 99999999875
|
FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B .... |
| >cd01895 EngA2 EngA2 subfamily | Back alignment and domain information |
|---|
Probab=99.93 E-value=9e-24 Score=142.65 Aligned_cols=156 Identities=19% Similarity=0.130 Sum_probs=105.5
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCC---CCCCCccceeEEEEEeCCEEEEEEecCCchhh----------H-HhHHHH
Q 030429 12 EMELSLIGLQNAGKTSLVNTIATGGYS---EDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRF----------R-TMWERY 77 (177)
Q Consensus 12 ~~~i~i~G~~~~GKSsli~~l~~~~~~---~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~----------~-~~~~~~ 77 (177)
.++|+++|.+|+|||||++++++.... .....+.......+..++..+.+||+||..+. . ......
T Consensus 2 ~~~i~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~e~~~~~~~~~~ 81 (174)
T cd01895 2 PIRIAIIGRPNVGKSSLVNALLGEERVIVSDIAGTTRDSIDVPFEYDGKKYTLIDTAGIRRKGKVEEGIEKYSVLRTLKA 81 (174)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCccceeccCCCCCccCceeeEEEECCeeEEEEECCCCccccchhccHHHHHHHHHHHH
Confidence 578999999999999999999876432 11122223333445567778999999995432 1 111234
Q ss_pred hcCCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccc--cCHHHHHHHhCcccccCCceeEEEee
Q 030429 78 CRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEA--LSKQALVDQLGLESITDREVCCYMIS 155 (177)
Q Consensus 78 ~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~S 155 (177)
+..+|++++|+|++++.+.... ..+..... .+.|+++++||+|+.+. ...+...+.+..........+++++|
T Consensus 82 ~~~~d~vi~v~d~~~~~~~~~~-~~~~~~~~----~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 156 (174)
T cd01895 82 IERADVVLLVIDATEGITEQDL-RIAGLILE----EGKALVIVVNKWDLVEKDSKTMKEFKKEIRRKLPFLDYAPIVFIS 156 (174)
T ss_pred HhhcCeEEEEEeCCCCcchhHH-HHHHHHHh----cCCCEEEEEeccccCCccHHHHHHHHHHHHhhcccccCCceEEEe
Confidence 6789999999999988765443 22222222 36899999999999765 33333334433222222345799999
Q ss_pred ecCCCChHHHHHHHHHH
Q 030429 156 CKDSINIDAVIDWLIKH 172 (177)
Q Consensus 156 a~~~~~i~~l~~~l~~~ 172 (177)
|+++.|++++++++.+.
T Consensus 157 a~~~~~i~~~~~~l~~~ 173 (174)
T cd01895 157 ALTGQGVDKLFDAIDEV 173 (174)
T ss_pred ccCCCCHHHHHHHHHHh
Confidence 99999999999998764
|
This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability. |
| >cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.7e-24 Score=144.34 Aligned_cols=147 Identities=24% Similarity=0.255 Sum_probs=102.6
Q ss_pred EEcCCCCCHHHHHHHHhcCCCCCCCC--CccceeEEEEEeCCEEEEEEecCCchhhHH------hHHHHh--cCCCEEEE
Q 030429 17 LIGLQNAGKTSLVNTIATGGYSEDMI--PTVGFNMRKVTKGNVTIKLWDLGGQRRFRT------MWERYC--RGVSAILY 86 (177)
Q Consensus 17 i~G~~~~GKSsli~~l~~~~~~~~~~--~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~------~~~~~~--~~~d~~i~ 86 (177)
++|.+|+|||||++++.+........ .|.......+..++..+.+|||||+..+.. ....++ +.+|++++
T Consensus 1 l~G~~~~GKssl~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~vi~ 80 (158)
T cd01879 1 LVGNPNVGKTTLFNALTGARQKVGNWPGVTVEKKEGRFKLGGKEIEIVDLPGTYSLSPYSEDEKVARDFLLGEKPDLIVN 80 (158)
T ss_pred CCCCCCCCHHHHHHHHhcCcccccCCCCcccccceEEEeeCCeEEEEEECCCccccCCCChhHHHHHHHhcCCCCcEEEE
Confidence 58999999999999999775433322 244455555667778999999999876543 234445 48999999
Q ss_pred EEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccCHHHHHHHhCcccccCCceeEEEeeecCCCChHHHH
Q 030429 87 VVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCKDSINIDAVI 166 (177)
Q Consensus 87 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~ 166 (177)
|+|+++++... .++..+.. .++|+++|+||+|+.+........+.+... .+.+++++||+++.|+++++
T Consensus 81 v~d~~~~~~~~---~~~~~~~~----~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~----~~~~~~~iSa~~~~~~~~l~ 149 (158)
T cd01879 81 VVDATNLERNL---YLTLQLLE----LGLPVVVALNMIDEAEKRGIKIDLDKLSEL----LGVPVVPTSARKGEGIDELK 149 (158)
T ss_pred EeeCCcchhHH---HHHHHHHH----cCCCEEEEEehhhhcccccchhhHHHHHHh----hCCCeEEEEccCCCCHHHHH
Confidence 99998754432 33333332 268999999999997653322212222111 12479999999999999999
Q ss_pred HHHHHHhh
Q 030429 167 DWLIKHSK 174 (177)
Q Consensus 167 ~~l~~~~~ 174 (177)
+++.+.+.
T Consensus 150 ~~l~~~~~ 157 (158)
T cd01879 150 DAIAELAE 157 (158)
T ss_pred HHHHHHhc
Confidence 99988764
|
E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent. |
| >PRK03003 GTP-binding protein Der; Reviewed | Back alignment and domain information |
|---|
Probab=99.93 E-value=5.2e-24 Score=164.13 Aligned_cols=154 Identities=19% Similarity=0.189 Sum_probs=106.7
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcCCCC---CCCCCccceeEEEEEeCCEEEEEEecCCchh--------hHHhHHHHh
Q 030429 10 KQEMELSLIGLQNAGKTSLVNTIATGGYS---EDMIPTVGFNMRKVTKGNVTIKLWDLGGQRR--------FRTMWERYC 78 (177)
Q Consensus 10 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~---~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~--------~~~~~~~~~ 78 (177)
....+|+++|.+|||||||+|++++.... .....|..........++..+.+|||||... +......++
T Consensus 36 ~~~~~V~IvG~~nvGKSSL~nrl~~~~~~~v~~~~gvT~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~ 115 (472)
T PRK03003 36 GPLPVVAVVGRPNVGKSTLVNRILGRREAVVEDVPGVTRDRVSYDAEWNGRRFTVVDTGGWEPDAKGLQASVAEQAEVAM 115 (472)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCcCcccccCCCCCCEeeEEEEEEECCcEEEEEeCCCcCCcchhHHHHHHHHHHHHH
Confidence 34578999999999999999999976532 1222233344444566788899999999652 334455678
Q ss_pred cCCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccCHHHHHHHhCcccccCCceeEEEeeecC
Q 030429 79 RGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCKD 158 (177)
Q Consensus 79 ~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 158 (177)
+.+|++++|+|+++..+... ..+...+.. .++|+++|+||+|+..... +..+.+.. .. -..+++||++
T Consensus 116 ~~aD~il~VvD~~~~~s~~~--~~i~~~l~~---~~~piilV~NK~Dl~~~~~--~~~~~~~~-g~----~~~~~iSA~~ 183 (472)
T PRK03003 116 RTADAVLFVVDATVGATATD--EAVARVLRR---SGKPVILAANKVDDERGEA--DAAALWSL-GL----GEPHPVSALH 183 (472)
T ss_pred HhCCEEEEEEECCCCCCHHH--HHHHHHHHH---cCCCEEEEEECccCCccch--hhHHHHhc-CC----CCeEEEEcCC
Confidence 89999999999998766543 222333332 4789999999999864321 11111111 11 1247999999
Q ss_pred CCChHHHHHHHHHHhhh
Q 030429 159 SINIDAVIDWLIKHSKT 175 (177)
Q Consensus 159 ~~~i~~l~~~l~~~~~~ 175 (177)
|.|+++++++|.+.+.+
T Consensus 184 g~gi~eL~~~i~~~l~~ 200 (472)
T PRK03003 184 GRGVGDLLDAVLAALPE 200 (472)
T ss_pred CCCcHHHHHHHHhhccc
Confidence 99999999999987754
|
|
| >PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.4e-24 Score=146.97 Aligned_cols=159 Identities=24% Similarity=0.288 Sum_probs=115.3
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcCCCC--------------------CCCCCccceeEEEEE--eCCEEEEEEecCCc
Q 030429 10 KQEMELSLIGLQNAGKTSLVNTIATGGYS--------------------EDMIPTVGFNMRKVT--KGNVTIKLWDLGGQ 67 (177)
Q Consensus 10 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~--------------------~~~~~t~~~~~~~~~--~~~~~~~~~D~~g~ 67 (177)
++..+|+++|+.++|||||+++|+..... ....-|.......+. ..+..++++|+||+
T Consensus 1 k~~~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~~~~~~~~~~~~~i~~iDtPG~ 80 (188)
T PF00009_consen 1 KNIRNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDLSFISFEKNENNRKITLIDTPGH 80 (188)
T ss_dssp STEEEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSEEEEEEBTESSEEEEEEEESSS
T ss_pred CCEEEEEEECCCCCCcEeechhhhhhccccccccccccccccccccchhhhcccccccccccccccccccceeecccccc
Confidence 35689999999999999999999843211 112345666667777 88999999999999
Q ss_pred hhhHHhHHHHhcCCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccCHHHHHHHhC-----cc
Q 030429 68 RRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLG-----LE 142 (177)
Q Consensus 68 ~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~-----~~ 142 (177)
..|.......+..+|++++|+|+.+.-. ......+..... .++|+++|+||+|+... ..++..+++. ..
T Consensus 81 ~~f~~~~~~~~~~~D~ailvVda~~g~~-~~~~~~l~~~~~----~~~p~ivvlNK~D~~~~-~~~~~~~~~~~~l~~~~ 154 (188)
T PF00009_consen 81 EDFIKEMIRGLRQADIAILVVDANDGIQ-PQTEEHLKILRE----LGIPIIVVLNKMDLIEK-ELEEIIEEIKEKLLKEY 154 (188)
T ss_dssp HHHHHHHHHHHTTSSEEEEEEETTTBST-HHHHHHHHHHHH----TT-SEEEEEETCTSSHH-HHHHHHHHHHHHHHHHT
T ss_pred cceeecccceecccccceeeeecccccc-cccccccccccc----cccceEEeeeeccchhh-hHHHHHHHHHHHhcccc
Confidence 9999888888999999999999976532 223333333333 37889999999999832 2222222222 11
Q ss_pred cccC-CceeEEEeeecCCCChHHHHHHHHHHhh
Q 030429 143 SITD-REVCCYMISCKDSINIDAVIDWLIKHSK 174 (177)
Q Consensus 143 ~~~~-~~~~~~~~Sa~~~~~i~~l~~~l~~~~~ 174 (177)
.... ...+++++||.+|.|+++|++.|.+.+.
T Consensus 155 ~~~~~~~~~vi~~Sa~~g~gi~~Ll~~l~~~~P 187 (188)
T PF00009_consen 155 GENGEEIVPVIPISALTGDGIDELLEALVELLP 187 (188)
T ss_dssp TSTTTSTEEEEEEBTTTTBTHHHHHHHHHHHS-
T ss_pred ccCccccceEEEEecCCCCCHHHHHHHHHHhCc
Confidence 1111 3579999999999999999999998764
|
The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C .... |
| >PRK12296 obgE GTPase CgtA; Reviewed | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.9e-24 Score=163.07 Aligned_cols=168 Identities=22% Similarity=0.233 Sum_probs=117.5
Q ss_pred eecccccceeEEEEEcCCCCCHHHHHHHHhcCCCC--CCCCCccceeEEEEEeCCEEEEEEecCCchh----hHH---hH
Q 030429 4 HISLFFKQEMELSLIGLQNAGKTSLVNTIATGGYS--EDMIPTVGFNMRKVTKGNVTIKLWDLGGQRR----FRT---MW 74 (177)
Q Consensus 4 ~~~~~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~----~~~---~~ 74 (177)
...++.+.-..|+|+|.|+||||||+++|.+.... .....|.......+..++..+.+||+||... ... ..
T Consensus 151 ~~~leLk~~adV~LVG~PNAGKSTLln~Ls~akpkIadypfTTl~P~lGvv~~~~~~f~laDtPGliegas~g~gLg~~f 230 (500)
T PRK12296 151 DLVLELKSVADVGLVGFPSAGKSSLISALSAAKPKIADYPFTTLVPNLGVVQAGDTRFTVADVPGLIPGASEGKGLGLDF 230 (500)
T ss_pred EEEEEecccceEEEEEcCCCCHHHHHHHHhcCCccccccCcccccceEEEEEECCeEEEEEECCCCccccchhhHHHHHH
Confidence 45567777889999999999999999999865432 2234566667777888889999999999532 111 12
Q ss_pred HHHhcCCCEEEEEEeCCCC----CCHHHHHHHHHHHHcCC----------CCCCCcEEEEeeCCCcccccCHHH-HHHHh
Q 030429 75 ERYCRGVSAILYVVDAADR----DSVPIARSELHELLMKP----------SLSGIPLLVLGNKIDKSEALSKQA-LVDQL 139 (177)
Q Consensus 75 ~~~~~~~d~~i~v~d~~~~----~~~~~~~~~~~~~~~~~----------~~~~~~~iiv~nK~D~~~~~~~~~-~~~~~ 139 (177)
..++..+|++++|+|+++. +.+.....+..++..+. ....+|+++|+||+|+.+.....+ +.+.+
T Consensus 231 LrhieradvLv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~l~~~~~~~~l~~kP~IVVlNKiDL~da~el~e~l~~~l 310 (500)
T PRK12296 231 LRHIERCAVLVHVVDCATLEPGRDPLSDIDALEAELAAYAPALDGDLGLGDLAERPRLVVLNKIDVPDARELAEFVRPEL 310 (500)
T ss_pred HHHHHhcCEEEEEECCcccccccCchhhHHHHHHHHHHhhhcccccchhhhhcCCCEEEEEECccchhhHHHHHHHHHHH
Confidence 2346779999999999863 34444444433333222 224689999999999975433222 22222
Q ss_pred CcccccCCceeEEEeeecCCCChHHHHHHHHHHhhhc
Q 030429 140 GLESITDREVCCYMISCKDSINIDAVIDWLIKHSKTA 176 (177)
Q Consensus 140 ~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~ 176 (177)
. ...++++++||+++.|+++++++|.+.+.+.
T Consensus 311 ~-----~~g~~Vf~ISA~tgeGLdEL~~~L~ell~~~ 342 (500)
T PRK12296 311 E-----ARGWPVFEVSAASREGLRELSFALAELVEEA 342 (500)
T ss_pred H-----HcCCeEEEEECCCCCCHHHHHHHHHHHHHhh
Confidence 1 1245799999999999999999999987653
|
|
| >cd01894 EngA1 EngA1 subfamily | Back alignment and domain information |
|---|
Probab=99.93 E-value=4.6e-24 Score=141.99 Aligned_cols=146 Identities=23% Similarity=0.216 Sum_probs=101.0
Q ss_pred EEEcCCCCCHHHHHHHHhcCCC---CCCCCCccceeEEEEEeCCEEEEEEecCCchhhHH--------hHHHHhcCCCEE
Q 030429 16 SLIGLQNAGKTSLVNTIATGGY---SEDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRT--------MWERYCRGVSAI 84 (177)
Q Consensus 16 ~i~G~~~~GKSsli~~l~~~~~---~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~--------~~~~~~~~~d~~ 84 (177)
+++|.+|+|||||++++++... ......|...........+..+.+|||||...+.. .....+..+|++
T Consensus 1 ~l~G~~~~GKssl~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~d~i 80 (157)
T cd01894 1 AIVGRPNVGKSTLFNRLTGRRDAIVEDTPGVTRDRIYGEAEWGGREFILIDTGGIEPDDEGISKEIREQAELAIEEADVI 80 (157)
T ss_pred CccCCCCCCHHHHHHHHhCCcEEeecCCCCceeCceeEEEEECCeEEEEEECCCCCCchhHHHHHHHHHHHHHHHhCCEE
Confidence 4789999999999999997642 12222233444555667788999999999876543 334567889999
Q ss_pred EEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccCHHHHHHHhCcccccCCceeEEEeeecCCCChHH
Q 030429 85 LYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCKDSINIDA 164 (177)
Q Consensus 85 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 164 (177)
++|+|++++.+.... ++...... .+.|+++|+||+|+.+..........++ ..+++++|++++.|+++
T Consensus 81 i~v~d~~~~~~~~~~--~~~~~~~~---~~~piiiv~nK~D~~~~~~~~~~~~~~~-------~~~~~~~Sa~~~~gv~~ 148 (157)
T cd01894 81 LFVVDGREGLTPADE--EIAKYLRK---SKKPVILVVNKVDNIKEEDEAAEFYSLG-------FGEPIPISAEHGRGIGD 148 (157)
T ss_pred EEEEeccccCCccHH--HHHHHHHh---cCCCEEEEEECcccCChHHHHHHHHhcC-------CCCeEEEecccCCCHHH
Confidence 999999775444332 22233222 3589999999999977533211111111 11578999999999999
Q ss_pred HHHHHHHHh
Q 030429 165 VIDWLIKHS 173 (177)
Q Consensus 165 l~~~l~~~~ 173 (177)
++++|.+.+
T Consensus 149 l~~~l~~~~ 157 (157)
T cd01894 149 LLDAILELL 157 (157)
T ss_pred HHHHHHhhC
Confidence 999998753
|
This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability. |
| >PRK12297 obgE GTPase CgtA; Reviewed | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.2e-23 Score=158.42 Aligned_cols=165 Identities=20% Similarity=0.241 Sum_probs=116.1
Q ss_pred eecccccceeEEEEEcCCCCCHHHHHHHHhcCCCC--CCCCCccceeEEEEEeC-CEEEEEEecCCchh----hHHhHH-
Q 030429 4 HISLFFKQEMELSLIGLQNAGKTSLVNTIATGGYS--EDMIPTVGFNMRKVTKG-NVTIKLWDLGGQRR----FRTMWE- 75 (177)
Q Consensus 4 ~~~~~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~--~~~~~t~~~~~~~~~~~-~~~~~~~D~~g~~~----~~~~~~- 75 (177)
...++.+--..|+++|.|+||||||++++++.... .....|.......+..+ +..+.+||+||... ...+..
T Consensus 150 ~~~lelk~~adVglVG~pNaGKSTLLn~Lt~ak~kIa~ypfTTl~PnlG~v~~~~~~~~~laD~PGliega~~~~gLg~~ 229 (424)
T PRK12297 150 ELRLELKLLADVGLVGFPNVGKSTLLSVVSNAKPKIANYHFTTLVPNLGVVETDDGRSFVMADIPGLIEGASEGVGLGHQ 229 (424)
T ss_pred EEEEeecccCcEEEEcCCCCCHHHHHHHHHcCCCccccCCcceeceEEEEEEEeCCceEEEEECCCCcccccccchHHHH
Confidence 34566666779999999999999999999976532 22334555555556655 78899999999532 112222
Q ss_pred --HHhcCCCEEEEEEeCCCC---CCHHHHHHHHHHHHcCCC-CCCCcEEEEeeCCCcccccC-HHHHHHHhCcccccCCc
Q 030429 76 --RYCRGVSAILYVVDAADR---DSVPIARSELHELLMKPS-LSGIPLLVLGNKIDKSEALS-KQALVDQLGLESITDRE 148 (177)
Q Consensus 76 --~~~~~~d~~i~v~d~~~~---~~~~~~~~~~~~~~~~~~-~~~~~~iiv~nK~D~~~~~~-~~~~~~~~~~~~~~~~~ 148 (177)
.++..++++++|+|+++. ++++....|...+..+.. ...+|+++|+||+|+.+... .+++.+.+.
T Consensus 230 fLrhier~~llI~VID~s~~~~~dp~e~~~~i~~EL~~y~~~L~~kP~IVV~NK~DL~~~~e~l~~l~~~l~-------- 301 (424)
T PRK12297 230 FLRHIERTRVIVHVIDMSGSEGRDPIEDYEKINKELKLYNPRLLERPQIVVANKMDLPEAEENLEEFKEKLG-------- 301 (424)
T ss_pred HHHHHhhCCEEEEEEeCCccccCChHHHHHHHHHHHhhhchhccCCcEEEEEeCCCCcCCHHHHHHHHHHhC--------
Confidence 345669999999999865 567777666666654322 24689999999999844311 122222222
Q ss_pred eeEEEeeecCCCChHHHHHHHHHHhhhc
Q 030429 149 VCCYMISCKDSINIDAVIDWLIKHSKTA 176 (177)
Q Consensus 149 ~~~~~~Sa~~~~~i~~l~~~l~~~~~~~ 176 (177)
.+++++||+++.|+++++++|.+.+.+.
T Consensus 302 ~~i~~iSA~tgeGI~eL~~~L~~~l~~~ 329 (424)
T PRK12297 302 PKVFPISALTGQGLDELLYAVAELLEET 329 (424)
T ss_pred CcEEEEeCCCCCCHHHHHHHHHHHHHhC
Confidence 3689999999999999999999887653
|
|
| >COG1100 GTPase SAR1 and related small G proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.92 E-value=7.1e-24 Score=148.66 Aligned_cols=162 Identities=28% Similarity=0.429 Sum_probs=120.9
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEE--eC--CEEEEEEecCCchhhHHhHHHHhcCCCEEEEE
Q 030429 12 EMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVT--KG--NVTIKLWDLGGQRRFRTMWERYCRGVSAILYV 87 (177)
Q Consensus 12 ~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~--~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v 87 (177)
.+||+++|++|||||||++++.++.+...+.++.+....... .. .+.+.+|||+|+++++..+..+..+++++++|
T Consensus 5 ~~kivv~G~~g~GKTtl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~gq~~~~~~~~~y~~~~~~~l~~ 84 (219)
T COG1100 5 EFKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPYRRNIKLQLWDTAGQEEYRSLRPEYYRGANGILIV 84 (219)
T ss_pred eEEEEEEcCCCccHHHHHHHHhcCcCcccCCCceeeeeEEEEEEeCCCEEEEEeecCCCHHHHHHHHHHHhcCCCEEEEE
Confidence 489999999999999999999999999888887665554432 22 57799999999999999999999999999999
Q ss_pred EeCCCCCCHHHH-HHHHHHHHcCCCCCCCcEEEEeeCCCcccccCHHH-HHHHh----------Cccccc-CCceeEEEe
Q 030429 88 VDAADRDSVPIA-RSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQA-LVDQL----------GLESIT-DREVCCYMI 154 (177)
Q Consensus 88 ~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~-~~~~~----------~~~~~~-~~~~~~~~~ 154 (177)
+|.++..++.+. ..|...+... .....|+++|+||+|+........ ....+ ...... .....++++
T Consensus 85 ~d~~~~~~~~~~~~~~~~~l~~~-~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (219)
T COG1100 85 YDSTLRESSDELTEEWLEELREL-APDDVPILLVGNKIDLFDEQSSSEEILNQLNREVVLLVLAPKAVLPEVANPALLET 163 (219)
T ss_pred EecccchhhhHHHHHHHHHHHHh-CCCCceEEEEecccccccchhHHHHHHhhhhcCcchhhhHhHHhhhhhcccceeEe
Confidence 999995555555 4555454443 324689999999999977543211 11110 000000 112238999
Q ss_pred eec--CCCChHHHHHHHHHHhh
Q 030429 155 SCK--DSINIDAVIDWLIKHSK 174 (177)
Q Consensus 155 Sa~--~~~~i~~l~~~l~~~~~ 174 (177)
|++ .+.+++++|..+...+.
T Consensus 164 s~~~~~~~~v~~~~~~~~~~~~ 185 (219)
T COG1100 164 SAKSLTGPNVNELFKELLRKLL 185 (219)
T ss_pred ecccCCCcCHHHHHHHHHHHHH
Confidence 999 99999999999998775
|
|
| >cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2) | Back alignment and domain information |
|---|
Probab=99.92 E-value=3.1e-24 Score=148.68 Aligned_cols=160 Identities=17% Similarity=0.160 Sum_probs=102.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCC-----CCCccceeEEEEE---------------------------------e
Q 030429 13 MELSLIGLQNAGKTSLVNTIATGGYSED-----MIPTVGFNMRKVT---------------------------------K 54 (177)
Q Consensus 13 ~~i~i~G~~~~GKSsli~~l~~~~~~~~-----~~~t~~~~~~~~~---------------------------------~ 54 (177)
++|+++|+.|+|||||++.+.+...... ...+......... .
T Consensus 1 ~~i~~~g~~~~GKttL~~~l~~~~~~~~~~e~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (203)
T cd01888 1 INIGTIGHVAHGKSTLVKALSGVWTVRFKEELERNITIKLGYANAKIYKCPNCGCPRPYCYRSKEDSPECECPGCGGETK 80 (203)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCCeeEEcCCceeecccccccccccCcCCCCccccccccccccccccccCCccc
Confidence 4799999999999999999974311110 0111111111100 0
Q ss_pred CCEEEEEEecCCchhhHHhHHHHhcCCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccCHHH
Q 030429 55 GNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQA 134 (177)
Q Consensus 55 ~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~ 134 (177)
....+.+|||||+..+.......+..+|++++|+|++++.........+..+... ...|+++|+||+|+.+......
T Consensus 81 ~~~~i~~iDtPG~~~~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l~~~~~~---~~~~iiivvNK~Dl~~~~~~~~ 157 (203)
T cd01888 81 LVRHVSFVDCPGHEILMATMLSGAAVMDGALLLIAANEPCPQPQTSEHLAALEIM---GLKHIIIVQNKIDLVKEEQALE 157 (203)
T ss_pred cccEEEEEECCChHHHHHHHHHhhhcCCEEEEEEECCCCCCCcchHHHHHHHHHc---CCCcEEEEEEchhccCHHHHHH
Confidence 1268999999999998887778888899999999998743222222233322222 2357999999999976433222
Q ss_pred HHHHhCcc--cccCCceeEEEeeecCCCChHHHHHHHHHHhhh
Q 030429 135 LVDQLGLE--SITDREVCCYMISCKDSINIDAVIDWLIKHSKT 175 (177)
Q Consensus 135 ~~~~~~~~--~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~ 175 (177)
..+.+... .......+++++||++|.|+++++++|.+.+..
T Consensus 158 ~~~~i~~~~~~~~~~~~~i~~vSA~~g~gi~~L~~~l~~~l~~ 200 (203)
T cd01888 158 NYEQIKKFVKGTIAENAPIIPISAQLKYNIDVLLEYIVKKIPT 200 (203)
T ss_pred HHHHHHHHHhccccCCCcEEEEeCCCCCCHHHHHHHHHHhCCC
Confidence 22222111 111234579999999999999999999987754
|
eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel |
| >PRK00454 engB GTP-binding protein YsxC; Reviewed | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.3e-23 Score=145.00 Aligned_cols=162 Identities=20% Similarity=0.224 Sum_probs=105.5
Q ss_pred cccceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEE-EEeCCEEEEEEecCCc----------hhhHHhHHH
Q 030429 8 FFKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRK-VTKGNVTIKLWDLGGQ----------RRFRTMWER 76 (177)
Q Consensus 8 ~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~-~~~~~~~~~~~D~~g~----------~~~~~~~~~ 76 (177)
..+...+|+++|.+|+|||||++++++..+.....++.+.+... ...-+..+.+|||||. ..+......
T Consensus 20 ~~~~~~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~~~~~~ 99 (196)
T PRK00454 20 PPDDGPEIAFAGRSNVGKSSLINALTNRKNLARTSKTPGRTQLINFFEVNDKLRLVDLPGYGYAKVSKEEKEKWQKLIEE 99 (196)
T ss_pred CCCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCceeEEEEEecCCeEEEeCCCCCCCcCCCchHHHHHHHHHHH
Confidence 34566899999999999999999999765444433333322111 1112478999999994 334444444
Q ss_pred HhcC---CCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccCHHHHHHHhCcccccCCceeEEE
Q 030429 77 YCRG---VSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYM 153 (177)
Q Consensus 77 ~~~~---~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (177)
++.. .+++++|+|++++..... .++...+.. .+.|+++++||+|+.+..+.+...+.+.... .....++++
T Consensus 100 ~~~~~~~~~~~~~v~d~~~~~~~~~--~~i~~~l~~---~~~~~iiv~nK~Dl~~~~~~~~~~~~i~~~l-~~~~~~~~~ 173 (196)
T PRK00454 100 YLRTRENLKGVVLLIDSRHPLKELD--LQMIEWLKE---YGIPVLIVLTKADKLKKGERKKQLKKVRKAL-KFGDDEVIL 173 (196)
T ss_pred HHHhCccceEEEEEEecCCCCCHHH--HHHHHHHHH---cCCcEEEEEECcccCCHHHHHHHHHHHHHHH-HhcCCceEE
Confidence 5544 467888899877544332 222233222 3689999999999976544433332222111 111457899
Q ss_pred eeecCCCChHHHHHHHHHHhhh
Q 030429 154 ISCKDSINIDAVIDWLIKHSKT 175 (177)
Q Consensus 154 ~Sa~~~~~i~~l~~~l~~~~~~ 175 (177)
+||+++.|++++++.|.+.+++
T Consensus 174 ~Sa~~~~gi~~l~~~i~~~~~~ 195 (196)
T PRK00454 174 FSSLKKQGIDELRAAIAKWLAE 195 (196)
T ss_pred EEcCCCCCHHHHHHHHHHHhcC
Confidence 9999999999999999988875
|
|
| >KOG0393 consensus Ras-related small GTPase, Rho type [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.92 E-value=4.4e-25 Score=148.41 Aligned_cols=163 Identities=21% Similarity=0.293 Sum_probs=124.8
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEE---EEE-eCCEEEEEEecCCchhhHHhHHHHhcCCCEEEE
Q 030429 11 QEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMR---KVT-KGNVTIKLWDLGGQRRFRTMWERYCRGVSAILY 86 (177)
Q Consensus 11 ~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~---~~~-~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~ 86 (177)
..+|++++|+..+|||+|+..+..+.|+..+.+|.--++. .+. ...+.+.+|||+||++|..+.+..+.++|++++
T Consensus 3 ~~~K~VvVGDga~GKT~ll~~~t~~~fp~~yvPTVFdnys~~v~V~dg~~v~L~LwDTAGqedYDrlRplsY~~tdvfl~ 82 (198)
T KOG0393|consen 3 RRIKCVVVGDGAVGKTCLLISYTTNAFPEEYVPTVFDNYSANVTVDDGKPVELGLWDTAGQEDYDRLRPLSYPQTDVFLL 82 (198)
T ss_pred eeeEEEEECCCCcCceEEEEEeccCcCcccccCeEEccceEEEEecCCCEEEEeeeecCCCcccccccccCCCCCCEEEE
Confidence 5689999999999999999999999999999887763332 232 456889999999999998877778999999999
Q ss_pred EEeCCCCCCHHHH-HHHHHHHHcCCCCCCCcEEEEeeCCCcccccCHHHHHHHhCccc----------ccCCceeEEEee
Q 030429 87 VVDAADRDSVPIA-RSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLES----------ITDREVCCYMIS 155 (177)
Q Consensus 87 v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~S 155 (177)
||+++++.++++. ..|+.++.... ++.|+++|++|.|+.+.....+..+..+... .......|++||
T Consensus 83 cfsv~~p~S~~nv~~kW~pEi~~~c--p~vpiiLVGtk~DLr~d~~~~~~l~~~~~~~Vt~~~g~~lA~~iga~~y~EcS 160 (198)
T KOG0393|consen 83 CFSVVSPESFENVKSKWIPEIKHHC--PNVPIILVGTKADLRDDPSTLEKLQRQGLEPVTYEQGLELAKEIGAVKYLECS 160 (198)
T ss_pred EEEcCChhhHHHHHhhhhHHHHhhC--CCCCEEEEeehHHhhhCHHHHHHHHhccCCcccHHHHHHHHHHhCcceeeeeh
Confidence 9999999999997 45555554443 6899999999999985432111111111000 011235799999
Q ss_pred ecCCCChHHHHHHHHHHhhh
Q 030429 156 CKDSINIDAVIDWLIKHSKT 175 (177)
Q Consensus 156 a~~~~~i~~l~~~l~~~~~~ 175 (177)
|++..|++++|+..+..+..
T Consensus 161 a~tq~~v~~vF~~a~~~~l~ 180 (198)
T KOG0393|consen 161 ALTQKGVKEVFDEAIRAALR 180 (198)
T ss_pred hhhhCCcHHHHHHHHHHHhc
Confidence 99999999999999887654
|
|
| >PRK15467 ethanolamine utilization protein EutP; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.1e-23 Score=140.52 Aligned_cols=142 Identities=20% Similarity=0.231 Sum_probs=94.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEeCCEEEEEEecCCch----hhHHhHHHHhcCCCEEEEEEe
Q 030429 14 ELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQR----RFRTMWERYCRGVSAILYVVD 89 (177)
Q Consensus 14 ~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~----~~~~~~~~~~~~~d~~i~v~d 89 (177)
+|+++|.+|+|||||++++.+.. .. ...+ ..+..... .+|||||.. ++.......+.++|++++|+|
T Consensus 3 ~i~~iG~~~~GKstl~~~l~~~~-~~-~~~~-----~~v~~~~~--~~iDtpG~~~~~~~~~~~~~~~~~~ad~il~v~d 73 (158)
T PRK15467 3 RIAFVGAVGAGKTTLFNALQGNY-TL-ARKT-----QAVEFNDK--GDIDTPGEYFSHPRWYHALITTLQDVDMLIYVHG 73 (158)
T ss_pred EEEEECCCCCCHHHHHHHHcCCC-cc-Cccc-----eEEEECCC--CcccCCccccCCHHHHHHHHHHHhcCCEEEEEEe
Confidence 79999999999999999987432 11 1111 22222221 369999962 222222344789999999999
Q ss_pred CCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccCHHHHHHHhCcccccCCceeEEEeeecCCCChHHHHHHH
Q 030429 90 AADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCKDSINIDAVIDWL 169 (177)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l 169 (177)
+++.+++.. .|+..+ ....|+++++||+|+.+. ..+.+.+.+..... ..+++++||++|.|++++|+.+
T Consensus 74 ~~~~~s~~~--~~~~~~-----~~~~~ii~v~nK~Dl~~~-~~~~~~~~~~~~~~---~~p~~~~Sa~~g~gi~~l~~~l 142 (158)
T PRK15467 74 ANDPESRLP--AGLLDI-----GVSKRQIAVISKTDMPDA-DVAATRKLLLETGF---EEPIFELNSHDPQSVQQLVDYL 142 (158)
T ss_pred CCCcccccC--HHHHhc-----cCCCCeEEEEEccccCcc-cHHHHHHHHHHcCC---CCCEEEEECCCccCHHHHHHHH
Confidence 998876532 333332 135789999999998653 33333333222111 1489999999999999999999
Q ss_pred HHHhhh
Q 030429 170 IKHSKT 175 (177)
Q Consensus 170 ~~~~~~ 175 (177)
.+.+.+
T Consensus 143 ~~~~~~ 148 (158)
T PRK15467 143 ASLTKQ 148 (158)
T ss_pred HHhchh
Confidence 987653
|
|
| >cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta) | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.7e-23 Score=144.92 Aligned_cols=157 Identities=23% Similarity=0.290 Sum_probs=112.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEe----CCEEEEEEecCCchhhHHhHHHHhcCC-CEEEEEE
Q 030429 14 ELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTK----GNVTIKLWDLGGQRRFRTMWERYCRGV-SAILYVV 88 (177)
Q Consensus 14 ~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~----~~~~~~~~D~~g~~~~~~~~~~~~~~~-d~~i~v~ 88 (177)
+|+++|++|||||||+++|..+.+.....++ ......... .+..+.+||+||+.+++..+..+++.+ +++|+|+
T Consensus 2 ~vll~G~~~sGKTsL~~~l~~~~~~~t~~s~-~~~~~~~~~~~~~~~~~~~l~D~pG~~~~~~~~~~~~~~~~~~vV~Vv 80 (203)
T cd04105 2 TVLLLGPSDSGKTALFTKLTTGKYRSTVTSI-EPNVATFILNSEGKGKKFRLVDVPGHPKLRDKLLETLKNSAKGIVFVV 80 (203)
T ss_pred eEEEEcCCCCCHHHHHHHHhcCCCCCccCcE-eecceEEEeecCCCCceEEEEECCCCHHHHHHHHHHHhccCCEEEEEE
Confidence 6899999999999999999987765554443 223333222 367899999999999998888889998 9999999
Q ss_pred eCCCC-CCHHHHHHHHHHHHcCC--CCCCCcEEEEeeCCCcccccCHHHHHHHhC-----------c-------------
Q 030429 89 DAADR-DSVPIARSELHELLMKP--SLSGIPLLVLGNKIDKSEALSKQALVDQLG-----------L------------- 141 (177)
Q Consensus 89 d~~~~-~~~~~~~~~~~~~~~~~--~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~-----------~------------- 141 (177)
|+++. .++.....++..++... ....+|+++++||+|+......+.+.+.+. .
T Consensus 81 D~~~~~~~~~~~~~~l~~il~~~~~~~~~~pvliv~NK~Dl~~a~~~~~i~~~le~ei~~~~~~r~~~l~~~~~~~~~~~ 160 (203)
T cd04105 81 DSATFQKNLKDVAEFLYDILTDLEKVKNKIPVLIACNKQDLFTAKPAKKIKEQLEKELNTLRESRSKSLSSLDGDEGSKE 160 (203)
T ss_pred ECccchhHHHHHHHHHHHHHHHHhhccCCCCEEEEecchhhcccCCHHHHHHHHHHHHHHHHHHHhcccccccccccccc
Confidence 99987 66777776766654432 124789999999999876433221111110 0
Q ss_pred ---------cccc--CCceeEEEeeecCCC-ChHHHHHHHHH
Q 030429 142 ---------ESIT--DREVCCYMISCKDSI-NIDAVIDWLIK 171 (177)
Q Consensus 142 ---------~~~~--~~~~~~~~~Sa~~~~-~i~~l~~~l~~ 171 (177)
..+. ...+.+.++|++.+. |++.+.+||.+
T Consensus 161 ~~~~~~~~~f~f~~~~~~v~~~~~s~~~~~~~~~~~~~w~~~ 202 (203)
T cd04105 161 SLGDKGGKSFEFDQLEGKVEFLEGSVKVDGGGIDGWEEWIDE 202 (203)
T ss_pred ccccccCcceeeccCceeEEEEEeEEecCCCChHhHHHHHhh
Confidence 0000 125678899998876 69999999864
|
SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ |
| >KOG4252 consensus GTP-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.9e-25 Score=145.55 Aligned_cols=156 Identities=25% Similarity=0.416 Sum_probs=133.3
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEE----EEeCCEEEEEEecCCchhhHHhHHHHhcCCCEEE
Q 030429 10 KQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRK----VTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAIL 85 (177)
Q Consensus 10 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~----~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i 85 (177)
+.-+|++++|..++||||++++++.+-|..++..+++.++.. +...++...+||++|++.|......|++++.+.+
T Consensus 18 e~aiK~vivGng~VGKssmiqryCkgifTkdykktIgvdflerqi~v~~Edvr~mlWdtagqeEfDaItkAyyrgaqa~v 97 (246)
T KOG4252|consen 18 ERAIKFVIVGNGSVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIKVLIEDVRSMLWDTAGQEEFDAITKAYYRGAQASV 97 (246)
T ss_pred hhhEEEEEECCCccchHHHHHHHhccccccccccccchhhhhHHHHhhHHHHHHHHHHhccchhHHHHHHHHhccccceE
Confidence 456899999999999999999999999999999988866655 4566788899999999999999999999999999
Q ss_pred EEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccCH-----HHHHHHhCcccccCCceeEEEeeecCCC
Q 030429 86 YVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSK-----QALVDQLGLESITDREVCCYMISCKDSI 160 (177)
Q Consensus 86 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 160 (177)
+||+-+|..+|+....|...+.... ..+|.++|-||+|+.+.... +-+.+.+.. .++-+|++...
T Consensus 98 LVFSTTDr~SFea~~~w~~kv~~e~--~~IPtV~vqNKIDlveds~~~~~evE~lak~l~~--------RlyRtSvked~ 167 (246)
T KOG4252|consen 98 LVFSTTDRYSFEATLEWYNKVQKET--ERIPTVFVQNKIDLVEDSQMDKGEVEGLAKKLHK--------RLYRTSVKEDF 167 (246)
T ss_pred EEEecccHHHHHHHHHHHHHHHHHh--ccCCeEEeeccchhhHhhhcchHHHHHHHHHhhh--------hhhhhhhhhhh
Confidence 9999999999999999999986664 47999999999999875332 223333332 47789999999
Q ss_pred ChHHHHHHHHHHhhh
Q 030429 161 NIDAVIDWLIKHSKT 175 (177)
Q Consensus 161 ~i~~l~~~l~~~~~~ 175 (177)
|+..+|..|.+.+.+
T Consensus 168 NV~~vF~YLaeK~~q 182 (246)
T KOG4252|consen 168 NVMHVFAYLAEKLTQ 182 (246)
T ss_pred hhHHHHHHHHHHHHH
Confidence 999999999988764
|
|
| >PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed | Back alignment and domain information |
|---|
Probab=99.91 E-value=4.8e-23 Score=165.43 Aligned_cols=161 Identities=17% Similarity=0.115 Sum_probs=113.1
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcCCC---CCCCCCccceeEEEEEeCCEEEEEEecCCchh----------hHHh-HH
Q 030429 10 KQEMELSLIGLQNAGKTSLVNTIATGGY---SEDMIPTVGFNMRKVTKGNVTIKLWDLGGQRR----------FRTM-WE 75 (177)
Q Consensus 10 ~~~~~i~i~G~~~~GKSsli~~l~~~~~---~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~----------~~~~-~~ 75 (177)
+...+|+++|.+|||||||+|++++... ......|.......+..++..+.+|||||..+ +... ..
T Consensus 448 ~~~~kI~ivG~~nvGKSSLin~l~~~~~~~v~~~~gtT~d~~~~~~~~~~~~~~liDTaG~~~~~~~~~~~e~~~~~r~~ 527 (712)
T PRK09518 448 SGLRRVALVGRPNVGKSSLLNQLTHEERAVVNDLAGTTRDPVDEIVEIDGEDWLFIDTAGIKRRQHKLTGAEYYSSLRTQ 527 (712)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCccccccCCCCCCCcCcceeEEEECCCEEEEEECCCcccCcccchhHHHHHHHHHH
Confidence 3458999999999999999999997763 22223344444445667788899999999531 2111 12
Q ss_pred HHhcCCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccCHHHHHHHhCcccccCCceeEEEee
Q 030429 76 RYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMIS 155 (177)
Q Consensus 76 ~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 155 (177)
.+++.+|++++|+|+++..+..... ++..+.. .++|+++|+||+|+.+....+.+.+.+..........+++++|
T Consensus 528 ~~i~~advvilViDat~~~s~~~~~-i~~~~~~----~~~piIiV~NK~DL~~~~~~~~~~~~~~~~l~~~~~~~ii~iS 602 (712)
T PRK09518 528 AAIERSELALFLFDASQPISEQDLK-VMSMAVD----AGRALVLVFNKWDLMDEFRRQRLERLWKTEFDRVTWARRVNLS 602 (712)
T ss_pred HHhhcCCEEEEEEECCCCCCHHHHH-HHHHHHH----cCCCEEEEEEchhcCChhHHHHHHHHHHHhccCCCCCCEEEEE
Confidence 3478899999999999987776654 3333333 3689999999999976543333333333222223445789999
Q ss_pred ecCCCChHHHHHHHHHHhhh
Q 030429 156 CKDSINIDAVIDWLIKHSKT 175 (177)
Q Consensus 156 a~~~~~i~~l~~~l~~~~~~ 175 (177)
|++|.|++++++.+.+...+
T Consensus 603 Aktg~gv~~L~~~i~~~~~~ 622 (712)
T PRK09518 603 AKTGWHTNRLAPAMQEALES 622 (712)
T ss_pred CCCCCCHHHHHHHHHHHHHH
Confidence 99999999999999987754
|
|
| >PRK00089 era GTPase Era; Reviewed | Back alignment and domain information |
|---|
Probab=99.91 E-value=7.1e-23 Score=149.40 Aligned_cols=157 Identities=23% Similarity=0.237 Sum_probs=105.5
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhcCCCCCC--CCCccceeEE-EEEeCCEEEEEEecCCchhhH--------HhHHHHhc
Q 030429 11 QEMELSLIGLQNAGKTSLVNTIATGGYSED--MIPTVGFNMR-KVTKGNVTIKLWDLGGQRRFR--------TMWERYCR 79 (177)
Q Consensus 11 ~~~~i~i~G~~~~GKSsli~~l~~~~~~~~--~~~t~~~~~~-~~~~~~~~~~~~D~~g~~~~~--------~~~~~~~~ 79 (177)
+.-.|+++|.+|||||||+|++++...... ...|...... ....++.++.+|||||..... ......+.
T Consensus 4 ~~g~V~iiG~pn~GKSTLin~L~g~~~~~vs~~~~tt~~~i~~i~~~~~~qi~~iDTPG~~~~~~~l~~~~~~~~~~~~~ 83 (292)
T PRK00089 4 KSGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRHRIRGIVTEDDAQIIFVDTPGIHKPKRALNRAMNKAAWSSLK 83 (292)
T ss_pred eeEEEEEECCCCCCHHHHHHHHhCCceeecCCCCCcccccEEEEEEcCCceEEEEECCCCCCchhHHHHHHHHHHHHHHh
Confidence 345699999999999999999997664321 2222222222 233456899999999964332 22234578
Q ss_pred CCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccc-ccCHHHHHHHhCcccccCCceeEEEeeecC
Q 030429 80 GVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSE-ALSKQALVDQLGLESITDREVCCYMISCKD 158 (177)
Q Consensus 80 ~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 158 (177)
++|++++|+|++++ +.....++...+.. .+.|+++|+||+|+.. ........+.+... ....+++++||++
T Consensus 84 ~~D~il~vvd~~~~--~~~~~~~i~~~l~~---~~~pvilVlNKiDl~~~~~~l~~~~~~l~~~---~~~~~i~~iSA~~ 155 (292)
T PRK00089 84 DVDLVLFVVDADEK--IGPGDEFILEKLKK---VKTPVILVLNKIDLVKDKEELLPLLEELSEL---MDFAEIVPISALK 155 (292)
T ss_pred cCCEEEEEEeCCCC--CChhHHHHHHHHhh---cCCCEEEEEECCcCCCCHHHHHHHHHHHHhh---CCCCeEEEecCCC
Confidence 89999999999873 22233333333332 3689999999999973 33333334443321 1245799999999
Q ss_pred CCChHHHHHHHHHHhhh
Q 030429 159 SINIDAVIDWLIKHSKT 175 (177)
Q Consensus 159 ~~~i~~l~~~l~~~~~~ 175 (177)
+.|+++++++|.+.+..
T Consensus 156 ~~gv~~L~~~L~~~l~~ 172 (292)
T PRK00089 156 GDNVDELLDVIAKYLPE 172 (292)
T ss_pred CCCHHHHHHHHHHhCCC
Confidence 99999999999988754
|
|
| >PRK12298 obgE GTPase CgtA; Reviewed | Back alignment and domain information |
|---|
Probab=99.91 E-value=7.3e-23 Score=153.38 Aligned_cols=170 Identities=20% Similarity=0.214 Sum_probs=117.3
Q ss_pred ecccccceeEEEEEcCCCCCHHHHHHHHhcCCCC--CCCCCccceeEEEEEeCC-EEEEEEecCCchhhH-------HhH
Q 030429 5 ISLFFKQEMELSLIGLQNAGKTSLVNTIATGGYS--EDMIPTVGFNMRKVTKGN-VTIKLWDLGGQRRFR-------TMW 74 (177)
Q Consensus 5 ~~~~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~--~~~~~t~~~~~~~~~~~~-~~~~~~D~~g~~~~~-------~~~ 74 (177)
..++.+.-..|+|+|.||||||||+|++++.... .....|.......+...+ ..+.++||||..... ...
T Consensus 152 ~~lelk~iadValVG~PNaGKSTLln~Lt~~k~~vs~~p~TT~~p~~Giv~~~~~~~i~~vDtPGi~~~a~~~~~Lg~~~ 231 (390)
T PRK12298 152 LKLELKLLADVGLLGLPNAGKSTFIRAVSAAKPKVADYPFTTLVPNLGVVRVDDERSFVVADIPGLIEGASEGAGLGIRF 231 (390)
T ss_pred EEEeeeccccEEEEcCCCCCHHHHHHHHhCCcccccCCCCCccCcEEEEEEeCCCcEEEEEeCCCccccccchhhHHHHH
Confidence 4455666678999999999999999999965532 223345556666666654 469999999964311 112
Q ss_pred HHHhcCCCEEEEEEeCC---CCCCHHHHHHHHHHHHcCC-CCCCCcEEEEeeCCCcccccCHHHHHHHhCcccccCCcee
Q 030429 75 ERYCRGVSAILYVVDAA---DRDSVPIARSELHELLMKP-SLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVC 150 (177)
Q Consensus 75 ~~~~~~~d~~i~v~d~~---~~~~~~~~~~~~~~~~~~~-~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (177)
..++..+|++++|+|++ +.+.++....+...+.... ....+|+++|+||+|+.+.....+..+.+.... ....+
T Consensus 232 l~~i~radvlL~VVD~s~~~~~d~~e~~~~l~~eL~~~~~~L~~kP~IlVlNKiDl~~~~el~~~l~~l~~~~--~~~~~ 309 (390)
T PRK12298 232 LKHLERCRVLLHLIDIAPIDGSDPVENARIIINELEKYSPKLAEKPRWLVFNKIDLLDEEEAEERAKAIVEAL--GWEGP 309 (390)
T ss_pred HHHHHhCCEEEEEeccCcccccChHHHHHHHHHHHHhhhhhhcCCCEEEEEeCCccCChHHHHHHHHHHHHHh--CCCCC
Confidence 24578899999999998 4556666666666665431 123589999999999976543333333322111 11125
Q ss_pred EEEeeecCCCChHHHHHHHHHHhhhc
Q 030429 151 CYMISCKDSINIDAVIDWLIKHSKTA 176 (177)
Q Consensus 151 ~~~~Sa~~~~~i~~l~~~l~~~~~~~ 176 (177)
++++||+++.|++++++.|.+.+.+.
T Consensus 310 Vi~ISA~tg~GIdeLl~~I~~~L~~~ 335 (390)
T PRK12298 310 VYLISAASGLGVKELCWDLMTFIEEN 335 (390)
T ss_pred EEEEECCCCcCHHHHHHHHHHHhhhC
Confidence 89999999999999999999988653
|
|
| >COG1159 Era GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.91 E-value=5.4e-23 Score=145.04 Aligned_cols=158 Identities=23% Similarity=0.200 Sum_probs=111.9
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhcCCC---CCCCCCccceeEEEEEeCCEEEEEEecCCchhh--------HHhHHHHhc
Q 030429 11 QEMELSLIGLQNAGKTSLVNTIATGGY---SEDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRF--------RTMWERYCR 79 (177)
Q Consensus 11 ~~~~i~i~G~~~~GKSsli~~l~~~~~---~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~--------~~~~~~~~~ 79 (177)
+.-.|+++|.|++|||||+|++++... .+....|-......+..++.++.++||||...- .......+.
T Consensus 5 ksGfVaIiGrPNvGKSTLlN~l~G~KisIvS~k~QTTR~~I~GI~t~~~~QiIfvDTPGih~pk~~l~~~m~~~a~~sl~ 84 (298)
T COG1159 5 KSGFVAIIGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIVTTDNAQIIFVDTPGIHKPKHALGELMNKAARSALK 84 (298)
T ss_pred eEEEEEEEcCCCCcHHHHHHHHhcCceEeecCCcchhhhheeEEEEcCCceEEEEeCCCCCCcchHHHHHHHHHHHHHhc
Confidence 455789999999999999999998764 333334444444556778999999999993322 222234578
Q ss_pred CCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccC-HHHHHHHhCcccccCCceeEEEeeecC
Q 030429 80 GVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALS-KQALVDQLGLESITDREVCCYMISCKD 158 (177)
Q Consensus 80 ~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 158 (177)
++|++++|+|++.+..- ...+..+.+.. .+.|+++++||+|...... ...+.+.+.. ...+..++++||++
T Consensus 85 dvDlilfvvd~~~~~~~--~d~~il~~lk~---~~~pvil~iNKID~~~~~~~l~~~~~~~~~---~~~f~~ivpiSA~~ 156 (298)
T COG1159 85 DVDLILFVVDADEGWGP--GDEFILEQLKK---TKTPVILVVNKIDKVKPKTVLLKLIAFLKK---LLPFKEIVPISALK 156 (298)
T ss_pred cCcEEEEEEeccccCCc--cHHHHHHHHhh---cCCCeEEEEEccccCCcHHHHHHHHHHHHh---hCCcceEEEeeccc
Confidence 89999999999774322 22333333333 4689999999999987755 2334443332 22334799999999
Q ss_pred CCChHHHHHHHHHHhhhc
Q 030429 159 SINIDAVIDWLIKHSKTA 176 (177)
Q Consensus 159 ~~~i~~l~~~l~~~~~~~ 176 (177)
|.|++.|.+.+...+.+.
T Consensus 157 g~n~~~L~~~i~~~Lpeg 174 (298)
T COG1159 157 GDNVDTLLEIIKEYLPEG 174 (298)
T ss_pred cCCHHHHHHHHHHhCCCC
Confidence 999999999999988653
|
|
| >PTZ00099 rab6; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=7.4e-24 Score=143.46 Aligned_cols=136 Identities=21% Similarity=0.366 Sum_probs=105.9
Q ss_pred CCCCCCCCCccceeEEE--EE--eCCEEEEEEecCCchhhHHhHHHHhcCCCEEEEEEeCCCCCCHHHHHHHHHHHHcCC
Q 030429 35 GGYSEDMIPTVGFNMRK--VT--KGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKP 110 (177)
Q Consensus 35 ~~~~~~~~~t~~~~~~~--~~--~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~ 110 (177)
+.|...+.+|.+..+.. +. .+.+.+.+|||||++++...+..+++++|++++|||++++.+++....|+..+....
T Consensus 3 ~~F~~~~~~Tig~~~~~~~~~~~~~~v~l~iwDt~G~e~~~~~~~~~~~~ad~~ilv~D~t~~~sf~~~~~w~~~i~~~~ 82 (176)
T PTZ00099 3 DTFDNNYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNER 82 (176)
T ss_pred CCcCCCCCCccceEEEEEEEEECCEEEEEEEEECCChHHhhhccHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhc
Confidence 35667778888866643 23 345889999999999999999999999999999999999999999999988886653
Q ss_pred CCCCCcEEEEeeCCCccccc--CHHHHHHHhCcccccCCceeEEEeeecCCCChHHHHHHHHHHhhhc
Q 030429 111 SLSGIPLLVLGNKIDKSEAL--SKQALVDQLGLESITDREVCCYMISCKDSINIDAVIDWLIKHSKTA 176 (177)
Q Consensus 111 ~~~~~~~iiv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~ 176 (177)
. ...|+++|+||+|+.+.. ..++..... ......++++||++|.|++++|++|.+.+.+.
T Consensus 83 ~-~~~piilVgNK~DL~~~~~v~~~e~~~~~-----~~~~~~~~e~SAk~g~nV~~lf~~l~~~l~~~ 144 (176)
T PTZ00099 83 G-KDVIIALVGNKTDLGDLRKVTYEEGMQKA-----QEYNTMFHETSAKAGHNIKVLFKKIAAKLPNL 144 (176)
T ss_pred C-CCCeEEEEEECcccccccCCCHHHHHHHH-----HHcCCEEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 2 568999999999986432 222222221 11234689999999999999999999988653
|
|
| >PRK00093 GTP-binding protein Der; Reviewed | Back alignment and domain information |
|---|
Probab=99.91 E-value=8.4e-23 Score=156.52 Aligned_cols=160 Identities=18% Similarity=0.144 Sum_probs=110.8
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcCCCC---CCCCCccceeEEEEEeCCEEEEEEecCCchhhH---------H--hHH
Q 030429 10 KQEMELSLIGLQNAGKTSLVNTIATGGYS---EDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRFR---------T--MWE 75 (177)
Q Consensus 10 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~---~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~---------~--~~~ 75 (177)
...++|+++|.+|+|||||++++++.... .....|.......+..++..+.+|||||..+.. . ...
T Consensus 171 ~~~~~v~ivG~~n~GKStlin~ll~~~~~~~~~~~gtt~~~~~~~~~~~~~~~~lvDT~G~~~~~~~~~~~e~~~~~~~~ 250 (435)
T PRK00093 171 DEPIKIAIIGRPNVGKSSLINALLGEERVIVSDIAGTTRDSIDTPFERDGQKYTLIDTAGIRRKGKVTEGVEKYSVIRTL 250 (435)
T ss_pred ccceEEEEECCCCCCHHHHHHHHhCCCceeecCCCCceEEEEEEEEEECCeeEEEEECCCCCCCcchhhHHHHHHHHHHH
Confidence 45799999999999999999999965421 112223333334455678889999999953221 1 112
Q ss_pred HHhcCCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccCHHHHHHHhCcccccCCceeEEEee
Q 030429 76 RYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMIS 155 (177)
Q Consensus 76 ~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 155 (177)
.++..+|++++|+|++++.+.... ..+..+.. .+.|+++|+||+|+.+....++..+.+..........+++++|
T Consensus 251 ~~~~~ad~~ilViD~~~~~~~~~~-~i~~~~~~----~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~l~~~~~~~i~~~S 325 (435)
T PRK00093 251 KAIERADVVLLVIDATEGITEQDL-RIAGLALE----AGRALVIVVNKWDLVDEKTMEEFKKELRRRLPFLDYAPIVFIS 325 (435)
T ss_pred HHHHHCCEEEEEEeCCCCCCHHHH-HHHHHHHH----cCCcEEEEEECccCCCHHHHHHHHHHHHHhcccccCCCEEEEe
Confidence 357789999999999987665543 22222222 3689999999999985444444444443333333557899999
Q ss_pred ecCCCChHHHHHHHHHHhh
Q 030429 156 CKDSINIDAVIDWLIKHSK 174 (177)
Q Consensus 156 a~~~~~i~~l~~~l~~~~~ 174 (177)
|++|.|++++++.+.+...
T Consensus 326 A~~~~gv~~l~~~i~~~~~ 344 (435)
T PRK00093 326 ALTGQGVDKLLEAIDEAYE 344 (435)
T ss_pred CCCCCCHHHHHHHHHHHHH
Confidence 9999999999999887654
|
|
| >PRK11058 GTPase HflX; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=1e-22 Score=154.18 Aligned_cols=153 Identities=24% Similarity=0.264 Sum_probs=105.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCC--CCCCccceeEEEEEeCCE-EEEEEecCCchhh--HHhH------HHHhcCC
Q 030429 13 MELSLIGLQNAGKTSLVNTIATGGYSE--DMIPTVGFNMRKVTKGNV-TIKLWDLGGQRRF--RTMW------ERYCRGV 81 (177)
Q Consensus 13 ~~i~i~G~~~~GKSsli~~l~~~~~~~--~~~~t~~~~~~~~~~~~~-~~~~~D~~g~~~~--~~~~------~~~~~~~ 81 (177)
.+|+++|.+|+|||||+|+|++..+.. ....|.......+...+. .+.+|||||..+. ...+ ...+..+
T Consensus 198 p~ValVG~~NaGKSSLlN~Lt~~~~~v~~~~~tTld~~~~~i~l~~~~~~~l~DTaG~~r~lp~~lve~f~~tl~~~~~A 277 (426)
T PRK11058 198 PTVSLVGYTNAGKSTLFNRITEARVYAADQLFATLDPTLRRIDVADVGETVLADTVGFIRHLPHDLVAAFKATLQETRQA 277 (426)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCceeeccCCCCCcCCceEEEEeCCCCeEEEEecCcccccCCHHHHHHHHHHHHHhhcC
Confidence 589999999999999999999765432 234555555556655543 8899999997331 1222 2346789
Q ss_pred CEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccCHHHHHHHhCcccccCCcee-EEEeeecCCC
Q 030429 82 SAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVC-CYMISCKDSI 160 (177)
Q Consensus 82 d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~ 160 (177)
|++++|+|++++.+......+...+ ......++|+++|+||+|+.+.... .. .... .+.+ ++++||++|.
T Consensus 278 DlIL~VvDaS~~~~~e~l~~v~~iL-~el~~~~~pvIiV~NKiDL~~~~~~-~~-~~~~------~~~~~~v~ISAktG~ 348 (426)
T PRK11058 278 TLLLHVVDAADVRVQENIEAVNTVL-EEIDAHEIPTLLVMNKIDMLDDFEP-RI-DRDE------ENKPIRVWLSAQTGA 348 (426)
T ss_pred CEEEEEEeCCCccHHHHHHHHHHHH-HHhccCCCCEEEEEEcccCCCchhH-HH-HHHh------cCCCceEEEeCCCCC
Confidence 9999999999988777654332222 2222246899999999999653211 11 1110 1112 5789999999
Q ss_pred ChHHHHHHHHHHhh
Q 030429 161 NIDAVIDWLIKHSK 174 (177)
Q Consensus 161 ~i~~l~~~l~~~~~ 174 (177)
|+++++++|.+.+.
T Consensus 349 GIdeL~e~I~~~l~ 362 (426)
T PRK11058 349 GIPLLFQALTERLS 362 (426)
T ss_pred CHHHHHHHHHHHhh
Confidence 99999999998874
|
|
| >cd04163 Era Era subfamily | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.4e-22 Score=135.83 Aligned_cols=154 Identities=23% Similarity=0.211 Sum_probs=102.7
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCCCCCC---CccceeEEEEEeCCEEEEEEecCCchhhHH--------hHHHHhcC
Q 030429 12 EMELSLIGLQNAGKTSLVNTIATGGYSEDMI---PTVGFNMRKVTKGNVTIKLWDLGGQRRFRT--------MWERYCRG 80 (177)
Q Consensus 12 ~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~---~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~--------~~~~~~~~ 80 (177)
..+|+++|++|+|||||++++.+........ .+...........+..+.+||+||...... .....+..
T Consensus 3 ~~~i~~~G~~g~GKttl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~ 82 (168)
T cd04163 3 SGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIYTDDDAQIIFVDTPGIHKPKKKLGERMVKAAWSALKD 82 (168)
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCceEeccCCCCceeceEEEEEEcCCeEEEEEECCCCCcchHHHHHHHHHHHHHHHHh
Confidence 5789999999999999999998664322111 111122222345568899999999643322 23345778
Q ss_pred CCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccc-ccCHHHHHHHhCcccccCCceeEEEeeecCC
Q 030429 81 VSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSE-ALSKQALVDQLGLESITDREVCCYMISCKDS 159 (177)
Q Consensus 81 ~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 159 (177)
+|++++|+|++++. .....++...... .+.|+++|+||+|+.. .....+..+.+... ....+++++|++++
T Consensus 83 ~d~i~~v~d~~~~~--~~~~~~~~~~~~~---~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~---~~~~~~~~~s~~~~ 154 (168)
T cd04163 83 VDLVLFVVDASEPI--GEGDEFILELLKK---SKTPVILVLNKIDLVKDKEDLLPLLEKLKEL---GPFAEIFPISALKG 154 (168)
T ss_pred CCEEEEEEECCCcc--CchHHHHHHHHHH---hCCCEEEEEEchhccccHHHHHHHHHHHHhc---cCCCceEEEEeccC
Confidence 99999999998872 2222233333222 2589999999999973 33333444443322 22347899999999
Q ss_pred CChHHHHHHHHHHh
Q 030429 160 INIDAVIDWLIKHS 173 (177)
Q Consensus 160 ~~i~~l~~~l~~~~ 173 (177)
.|++++++.|.+.+
T Consensus 155 ~~~~~l~~~l~~~~ 168 (168)
T cd04163 155 ENVDELLEEIVKYL 168 (168)
T ss_pred CChHHHHHHHHhhC
Confidence 99999999998753
|
Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA. |
| >TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB | Back alignment and domain information |
|---|
Probab=99.90 E-value=1e-22 Score=138.68 Aligned_cols=149 Identities=21% Similarity=0.283 Sum_probs=94.5
Q ss_pred cccccceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeE--EEEEeCCEEEEEEecCCch----------hhHHh
Q 030429 6 SLFFKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNM--RKVTKGNVTIKLWDLGGQR----------RFRTM 73 (177)
Q Consensus 6 ~~~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~--~~~~~~~~~~~~~D~~g~~----------~~~~~ 73 (177)
.+...+..+|+++|.+|+|||||++++++..+.....++.+.+. ..+..++ .+.+|||||.. .+...
T Consensus 12 ~~~~~~~~~i~ivG~~~~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~-~~~liDtpG~~~~~~~~~~~~~~~~~ 90 (179)
T TIGR03598 12 QLPPDDGPEIAFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLINFFEVND-GFRLVDLPGYGYAKVSKEEKEKWQKL 90 (179)
T ss_pred hCCCCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCcceEEEEEEeCC-cEEEEeCCCCccccCChhHHHHHHHH
Confidence 34457789999999999999999999997653333333332211 1122222 68999999942 23333
Q ss_pred HHHHhc---CCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccCHH----HHHHHhCcccccC
Q 030429 74 WERYCR---GVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQ----ALVDQLGLESITD 146 (177)
Q Consensus 74 ~~~~~~---~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~----~~~~~~~~~~~~~ 146 (177)
...+++ .++++++|+|++++-+.... .+...+.. .+.|+++++||+|+.+..+.+ ++.+.+... .
T Consensus 91 ~~~~l~~~~~~~~ii~vvd~~~~~~~~~~--~~~~~~~~---~~~pviiv~nK~D~~~~~~~~~~~~~i~~~l~~~---~ 162 (179)
T TIGR03598 91 IEEYLEKRENLKGVVLLMDIRHPLKELDL--EMLEWLRE---RGIPVLIVLTKADKLKKSELNKQLKKIKKALKKD---A 162 (179)
T ss_pred HHHHHHhChhhcEEEEEecCCCCCCHHHH--HHHHHHHH---cCCCEEEEEECcccCCHHHHHHHHHHHHHHHhhc---c
Confidence 344444 36899999999875444333 22233332 368999999999997643332 233333221 1
Q ss_pred CceeEEEeeecCCCChH
Q 030429 147 REVCCYMISCKDSINID 163 (177)
Q Consensus 147 ~~~~~~~~Sa~~~~~i~ 163 (177)
...+++++||++|+|++
T Consensus 163 ~~~~v~~~Sa~~g~gi~ 179 (179)
T TIGR03598 163 DDPSVQLFSSLKKTGID 179 (179)
T ss_pred CCCceEEEECCCCCCCC
Confidence 23479999999999974
|
Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes. |
| >TIGR03594 GTPase_EngA ribosome-associated GTPase EngA | Back alignment and domain information |
|---|
Probab=99.90 E-value=2e-22 Score=154.22 Aligned_cols=149 Identities=22% Similarity=0.242 Sum_probs=105.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCC---CCCCCccceeEEEEEeCCEEEEEEecCCc--------hhhHHhHHHHhcCCC
Q 030429 14 ELSLIGLQNAGKTSLVNTIATGGYS---EDMIPTVGFNMRKVTKGNVTIKLWDLGGQ--------RRFRTMWERYCRGVS 82 (177)
Q Consensus 14 ~i~i~G~~~~GKSsli~~l~~~~~~---~~~~~t~~~~~~~~~~~~~~~~~~D~~g~--------~~~~~~~~~~~~~~d 82 (177)
+|+++|.+|||||||+|++++.... .....|..........++..+.+|||||. ..+......+++.+|
T Consensus 1 ~i~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~t~d~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ad 80 (429)
T TIGR03594 1 VVAIVGRPNVGKSTLFNRLTGKRDAIVSDTPGVTRDRKYGDAEWGGREFILIDTGGIEEDDDGLDKQIREQAEIAIEEAD 80 (429)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCcceecCCCCcccCceEEEEEECCeEEEEEECCCCCCcchhHHHHHHHHHHHHHhhCC
Confidence 5899999999999999999976531 22233444555666778889999999995 344455566788999
Q ss_pred EEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccCHHHHHHHhCcccccCCceeEEEeeecCCCCh
Q 030429 83 AILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCKDSINI 162 (177)
Q Consensus 83 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i 162 (177)
++++|+|+.+..+... ..+...+.. .++|+++|+||+|..+..... .+... .....++++||++|.|+
T Consensus 81 ~vl~vvD~~~~~~~~d--~~i~~~l~~---~~~piilVvNK~D~~~~~~~~--~~~~~-----lg~~~~~~vSa~~g~gv 148 (429)
T TIGR03594 81 VILFVVDGREGLTPED--EEIAKWLRK---SGKPVILVANKIDGKKEDAVA--AEFYS-----LGFGEPIPISAEHGRGI 148 (429)
T ss_pred EEEEEEeCCCCCCHHH--HHHHHHHHH---hCCCEEEEEECccCCcccccH--HHHHh-----cCCCCeEEEeCCcCCCh
Confidence 9999999977533322 223333332 368999999999987643211 11111 11225899999999999
Q ss_pred HHHHHHHHHHhh
Q 030429 163 DAVIDWLIKHSK 174 (177)
Q Consensus 163 ~~l~~~l~~~~~ 174 (177)
+++++++.+.+.
T Consensus 149 ~~ll~~i~~~l~ 160 (429)
T TIGR03594 149 GDLLDAILELLP 160 (429)
T ss_pred HHHHHHHHHhcC
Confidence 999999998764
|
EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability. |
| >TIGR00487 IF-2 translation initiation factor IF-2 | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.2e-22 Score=157.43 Aligned_cols=157 Identities=21% Similarity=0.281 Sum_probs=110.7
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCC--ccceeEEEEEeCCE-EEEEEecCCchhhHHhHHHHhcCCCEEE
Q 030429 9 FKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIP--TVGFNMRKVTKGNV-TIKLWDLGGQRRFRTMWERYCRGVSAIL 85 (177)
Q Consensus 9 ~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~--t~~~~~~~~~~~~~-~~~~~D~~g~~~~~~~~~~~~~~~d~~i 85 (177)
..+..+|+++|++++|||||++++.+..+.....+ |.......+..++. .+.+|||||+..|..++...+..+|+++
T Consensus 84 ~~r~p~V~I~Ghvd~GKTSLl~~l~~~~v~~~e~~GIT~~ig~~~v~~~~~~~i~~iDTPGhe~F~~~r~rga~~aDiaI 163 (587)
T TIGR00487 84 VERPPVVTIMGHVDHGKTSLLDSIRKTKVAQGEAGGITQHIGAYHVENEDGKMITFLDTPGHEAFTSMRARGAKVTDIVV 163 (587)
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHhCCcccccCCceeecceEEEEEECCCcEEEEEECCCCcchhhHHHhhhccCCEEE
Confidence 45678999999999999999999997766554332 33333334444444 8999999999999998888899999999
Q ss_pred EEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccCHHHHHHHhCcccc----cCCceeEEEeeecCCCC
Q 030429 86 YVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESI----TDREVCCYMISCKDSIN 161 (177)
Q Consensus 86 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~Sa~~~~~ 161 (177)
+|+|+++....... ..+... ...++|+++++||+|+.+. ..++..+.+..... +....+++++||++|.|
T Consensus 164 LVVda~dgv~~qT~-e~i~~~----~~~~vPiIVviNKiDl~~~-~~e~v~~~L~~~g~~~~~~~~~~~~v~iSAktGeG 237 (587)
T TIGR00487 164 LVVAADDGVMPQTI-EAISHA----KAANVPIIVAINKIDKPEA-NPDRVKQELSEYGLVPEDWGGDTIFVPVSALTGDG 237 (587)
T ss_pred EEEECCCCCCHhHH-HHHHHH----HHcCCCEEEEEECcccccC-CHHHHHHHHHHhhhhHHhcCCCceEEEEECCCCCC
Confidence 99999775322222 222222 1246899999999999653 23333333321111 11235799999999999
Q ss_pred hHHHHHHHHH
Q 030429 162 IDAVIDWLIK 171 (177)
Q Consensus 162 i~~l~~~l~~ 171 (177)
+++++++|..
T Consensus 238 I~eLl~~I~~ 247 (587)
T TIGR00487 238 IDELLDMILL 247 (587)
T ss_pred hHHHHHhhhh
Confidence 9999999865
|
This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU. |
| >TIGR00475 selB selenocysteine-specific elongation factor SelB | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.8e-22 Score=158.36 Aligned_cols=158 Identities=20% Similarity=0.173 Sum_probs=110.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCC---CCCCC--CCccceeEEEEEeCCEEEEEEecCCchhhHHhHHHHhcCCCEEEEE
Q 030429 13 MELSLIGLQNAGKTSLVNTIATGG---YSEDM--IPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYV 87 (177)
Q Consensus 13 ~~i~i~G~~~~GKSsli~~l~~~~---~~~~~--~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v 87 (177)
+.|+++|++++|||||+++|.+.. +.... ..|.......+..++..+.+||+||+++|...+...+.++|++++|
T Consensus 1 ~~I~iiG~~d~GKTTLi~aLtg~~~d~~~eE~~rGiTid~~~~~~~~~~~~v~~iDtPGhe~f~~~~~~g~~~aD~aILV 80 (581)
T TIGR00475 1 MIIATAGHVDHGKTTLLKALTGIAADRLPEEKKRGMTIDLGFAYFPLPDYRLGFIDVPGHEKFISNAIAGGGGIDAALLV 80 (581)
T ss_pred CEEEEECCCCCCHHHHHHHHhCccCcCChhHhcCCceEEeEEEEEEeCCEEEEEEECCCHHHHHHHHHhhhccCCEEEEE
Confidence 479999999999999999998532 22222 2344455555667779999999999999988888889999999999
Q ss_pred EeCCCCCCHHHHHHHHHHHHcCCCCCCCc-EEEEeeCCCcccccCHHHHHHHhCcc--cc-cCCceeEEEeeecCCCChH
Q 030429 88 VDAADRDSVPIARSELHELLMKPSLSGIP-LLVLGNKIDKSEALSKQALVDQLGLE--SI-TDREVCCYMISCKDSINID 163 (177)
Q Consensus 88 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-~iiv~nK~D~~~~~~~~~~~~~~~~~--~~-~~~~~~~~~~Sa~~~~~i~ 163 (177)
+|+++... ......+..+ .. .++| +++|+||+|+.+....+...+.+... .. .....+++++||++|.|++
T Consensus 81 VDa~~G~~-~qT~ehl~il-~~---lgi~~iIVVlNK~Dlv~~~~~~~~~~ei~~~l~~~~~~~~~~ii~vSA~tG~GI~ 155 (581)
T TIGR00475 81 VDADEGVM-TQTGEHLAVL-DL---LGIPHTIVVITKADRVNEEEIKRTEMFMKQILNSYIFLKNAKIFKTSAKTGQGIG 155 (581)
T ss_pred EECCCCCc-HHHHHHHHHH-HH---cCCCeEEEEEECCCCCCHHHHHHHHHHHHHHHHHhCCCCCCcEEEEeCCCCCCch
Confidence 99987432 2222222222 22 2567 99999999997654322222222110 11 1124689999999999999
Q ss_pred HHHHHHHHHhhh
Q 030429 164 AVIDWLIKHSKT 175 (177)
Q Consensus 164 ~l~~~l~~~~~~ 175 (177)
++++.|.+.+..
T Consensus 156 eL~~~L~~l~~~ 167 (581)
T TIGR00475 156 ELKKELKNLLES 167 (581)
T ss_pred hHHHHHHHHHHh
Confidence 999999877653
|
In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes. |
| >cd00880 Era_like Era (E | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.1e-22 Score=133.89 Aligned_cols=152 Identities=25% Similarity=0.172 Sum_probs=105.5
Q ss_pred EEcCCCCCHHHHHHHHhcCCCCC---CCCCccceeEEEEEeC-CEEEEEEecCCchhhH-------HhHHHHhcCCCEEE
Q 030429 17 LIGLQNAGKTSLVNTIATGGYSE---DMIPTVGFNMRKVTKG-NVTIKLWDLGGQRRFR-------TMWERYCRGVSAIL 85 (177)
Q Consensus 17 i~G~~~~GKSsli~~l~~~~~~~---~~~~t~~~~~~~~~~~-~~~~~~~D~~g~~~~~-------~~~~~~~~~~d~~i 85 (177)
++|++|||||||++++.+..... ....+........... ...+.+||+||...+. .....++..+|+++
T Consensus 1 i~G~~gsGKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~~~~~d~il 80 (163)
T cd00880 1 LFGRTNAGKSSLLNALLGQEVAIVSPVPGTTTDPVEYVWELGPLGPVVLIDTPGIDEAGGLGREREELARRVLERADLIL 80 (163)
T ss_pred CcCCCCCCHHHHHHHHhCccccccCCCCCcEECCeEEEEEecCCCcEEEEECCCCCccccchhhHHHHHHHHHHhCCEEE
Confidence 58999999999999998654431 1112222333333333 6789999999965543 23445778899999
Q ss_pred EEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccCHHHHHHHhCcccccCCceeEEEeeecCCCChHHH
Q 030429 86 YVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCKDSINIDAV 165 (177)
Q Consensus 86 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l 165 (177)
+|+|+++........ +..... ..+.|+++|+||+|+..........+............+++++|++++.|++++
T Consensus 81 ~v~~~~~~~~~~~~~-~~~~~~----~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~v~~l 155 (163)
T cd00880 81 FVVDADLRADEEEEK-LLELLR----ERGKPVLLVLNKIDLLPEEEEEELLELRLLILLLLLGLPVIAVSALTGEGIDEL 155 (163)
T ss_pred EEEeCCCCCCHHHHH-HHHHHH----hcCCeEEEEEEccccCChhhHHHHHHHHHhhcccccCCceEEEeeeccCCHHHH
Confidence 999999887766654 223322 247899999999999876554444322222233345668999999999999999
Q ss_pred HHHHHHHh
Q 030429 166 IDWLIKHS 173 (177)
Q Consensus 166 ~~~l~~~~ 173 (177)
++++.+.+
T Consensus 156 ~~~l~~~~ 163 (163)
T cd00880 156 REALIEAL 163 (163)
T ss_pred HHHHHhhC
Confidence 99998753
|
coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se |
| >TIGR01393 lepA GTP-binding protein LepA | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.6e-22 Score=157.59 Aligned_cols=156 Identities=19% Similarity=0.197 Sum_probs=108.8
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCC-------CCCCC----------CCccceeEEEEEe-----CCEEEEEEecCCchh
Q 030429 12 EMELSLIGLQNAGKTSLVNTIATGG-------YSEDM----------IPTVGFNMRKVTK-----GNVTIKLWDLGGQRR 69 (177)
Q Consensus 12 ~~~i~i~G~~~~GKSsli~~l~~~~-------~~~~~----------~~t~~~~~~~~~~-----~~~~~~~~D~~g~~~ 69 (177)
--||+++|+.++|||||+++|+... +.... ..|.......+.+ ..+.+++|||||+.+
T Consensus 3 iRNi~IIGh~d~GKTTL~~rLl~~~g~i~~~~~~~~~~D~~~~ErerGiTi~~~~v~~~~~~~~g~~~~l~liDTPG~~d 82 (595)
T TIGR01393 3 IRNFSIIAHIDHGKSTLADRLLEYTGAISEREMREQVLDSMDLERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVD 82 (595)
T ss_pred eeEEEEECCCCCCHHHHHHHHHHHcCCCccccccccccCCChHHHhcCCCeeeeEEEEEEEcCCCCEEEEEEEECCCcHH
Confidence 3489999999999999999998542 11111 1122222222222 238899999999999
Q ss_pred hHHhHHHHhcCCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccCHHHHHHHhCcccccCCce
Q 030429 70 FRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREV 149 (177)
Q Consensus 70 ~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~ 149 (177)
|...+..++..+|++++|+|+++..+......|+... . .+.|+++|+||+|+.+.. .++..+.+... ......
T Consensus 83 F~~~v~~~l~~aD~aILVvDat~g~~~qt~~~~~~~~-~----~~ipiIiViNKiDl~~~~-~~~~~~el~~~-lg~~~~ 155 (595)
T TIGR01393 83 FSYEVSRSLAACEGALLLVDAAQGIEAQTLANVYLAL-E----NDLEIIPVINKIDLPSAD-PERVKKEIEEV-IGLDAS 155 (595)
T ss_pred HHHHHHHHHHhCCEEEEEecCCCCCCHhHHHHHHHHH-H----cCCCEEEEEECcCCCccC-HHHHHHHHHHH-hCCCcc
Confidence 9999999999999999999999877776655554433 2 267999999999986532 22222222111 111122
Q ss_pred eEEEeeecCCCChHHHHHHHHHHhh
Q 030429 150 CCYMISCKDSINIDAVIDWLIKHSK 174 (177)
Q Consensus 150 ~~~~~Sa~~~~~i~~l~~~l~~~~~ 174 (177)
.++++||++|.|+++++++|.+.+.
T Consensus 156 ~vi~vSAktG~GI~~Lle~I~~~lp 180 (595)
T TIGR01393 156 EAILASAKTGIGIEEILEAIVKRVP 180 (595)
T ss_pred eEEEeeccCCCCHHHHHHHHHHhCC
Confidence 5899999999999999999998765
|
LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown. |
| >PRK00093 GTP-binding protein Der; Reviewed | Back alignment and domain information |
|---|
Probab=99.90 E-value=3.1e-22 Score=153.41 Aligned_cols=148 Identities=22% Similarity=0.228 Sum_probs=102.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCC---CCCCCCccceeEEEEEeCCEEEEEEecCCchh--------hHHhHHHHhcCC
Q 030429 13 MELSLIGLQNAGKTSLVNTIATGGY---SEDMIPTVGFNMRKVTKGNVTIKLWDLGGQRR--------FRTMWERYCRGV 81 (177)
Q Consensus 13 ~~i~i~G~~~~GKSsli~~l~~~~~---~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~--------~~~~~~~~~~~~ 81 (177)
.+|+++|.+|||||||+|++.+... ......|..........++..+.+|||||... .......++..+
T Consensus 2 ~~I~ivG~~~vGKStL~n~l~~~~~~~v~~~~~~t~d~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~a 81 (435)
T PRK00093 2 PVVAIVGRPNVGKSTLFNRLTGKRDAIVADTPGVTRDRIYGEAEWLGREFILIDTGGIEPDDDGFEKQIREQAELAIEEA 81 (435)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceeeCCCCCCcccceEEEEEECCcEEEEEECCCCCCcchhHHHHHHHHHHHHHHhC
Confidence 4799999999999999999997653 22222344455556677789999999999876 223344567899
Q ss_pred CEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccCHHHHHHHhCcccccCCceeEEEeeecCCCC
Q 030429 82 SAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCKDSIN 161 (177)
Q Consensus 82 d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 161 (177)
|++++|+|++++.+... .++..++.. .+.|+++|+||+|..+.. ....+.... ....++++||++|.|
T Consensus 82 d~il~vvd~~~~~~~~~--~~~~~~l~~---~~~piilv~NK~D~~~~~--~~~~~~~~l-----g~~~~~~iSa~~g~g 149 (435)
T PRK00093 82 DVILFVVDGRAGLTPAD--EEIAKILRK---SNKPVILVVNKVDGPDEE--ADAYEFYSL-----GLGEPYPISAEHGRG 149 (435)
T ss_pred CEEEEEEECCCCCCHHH--HHHHHHHHH---cCCcEEEEEECccCccch--hhHHHHHhc-----CCCCCEEEEeeCCCC
Confidence 99999999987533322 222232222 268999999999975421 122222111 111378999999999
Q ss_pred hHHHHHHHHHH
Q 030429 162 IDAVIDWLIKH 172 (177)
Q Consensus 162 i~~l~~~l~~~ 172 (177)
++++++.+.+.
T Consensus 150 v~~l~~~I~~~ 160 (435)
T PRK00093 150 IGDLLDAILEE 160 (435)
T ss_pred HHHHHHHHHhh
Confidence 99999999873
|
|
| >PRK05306 infB translation initiation factor IF-2; Validated | Back alignment and domain information |
|---|
Probab=99.90 E-value=3.6e-22 Score=159.70 Aligned_cols=158 Identities=21% Similarity=0.279 Sum_probs=113.5
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCC--ccceeEEEEEeCCEEEEEEecCCchhhHHhHHHHhcCCCEEEE
Q 030429 9 FKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIP--TVGFNMRKVTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILY 86 (177)
Q Consensus 9 ~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~--t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~ 86 (177)
..+...|+++|..++|||||+++|.+..+...... |..+....+..++..+++|||||+..|..++...+..+|++++
T Consensus 287 ~~R~pvV~ImGhvd~GKTSLl~~Lr~~~v~~~e~~GIT~~iga~~v~~~~~~ItfiDTPGhe~F~~m~~rga~~aDiaIL 366 (787)
T PRK05306 287 VPRPPVVTIMGHVDHGKTSLLDAIRKTNVAAGEAGGITQHIGAYQVETNGGKITFLDTPGHEAFTAMRARGAQVTDIVVL 366 (787)
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHhCCccccccCceeeeccEEEEEECCEEEEEEECCCCccchhHHHhhhhhCCEEEE
Confidence 56788999999999999999999987665443222 3333444566677899999999999999988888999999999
Q ss_pred EEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccCHHHHHHHhCcccc----cCCceeEEEeeecCCCCh
Q 030429 87 VVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESI----TDREVCCYMISCKDSINI 162 (177)
Q Consensus 87 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~Sa~~~~~i 162 (177)
|+|+++...-.. ...+... ...++|+++++||+|+.+. ..+++...+..... +...++++++||++|.|+
T Consensus 367 VVdAddGv~~qT-~e~i~~a----~~~~vPiIVviNKiDl~~a-~~e~V~~eL~~~~~~~e~~g~~vp~vpvSAktG~GI 440 (787)
T PRK05306 367 VVAADDGVMPQT-IEAINHA----KAAGVPIIVAINKIDKPGA-NPDRVKQELSEYGLVPEEWGGDTIFVPVSAKTGEGI 440 (787)
T ss_pred EEECCCCCCHhH-HHHHHHH----HhcCCcEEEEEECcccccc-CHHHHHHHHHHhcccHHHhCCCceEEEEeCCCCCCc
Confidence 999987532222 2222222 2246899999999999653 22333332211111 123468999999999999
Q ss_pred HHHHHHHHHH
Q 030429 163 DAVIDWLIKH 172 (177)
Q Consensus 163 ~~l~~~l~~~ 172 (177)
++++++|...
T Consensus 441 ~eLle~I~~~ 450 (787)
T PRK05306 441 DELLEAILLQ 450 (787)
T ss_pred hHHHHhhhhh
Confidence 9999998753
|
|
| >PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.2e-23 Score=134.00 Aligned_cols=110 Identities=25% Similarity=0.512 Sum_probs=80.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCC--C----CCCccceeEEEEEeCCEEEEEEecCCchhhHHhHHHHhcCCCEEEEE
Q 030429 14 ELSLIGLQNAGKTSLVNTIATGGYSE--D----MIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYV 87 (177)
Q Consensus 14 ~i~i~G~~~~GKSsli~~l~~~~~~~--~----~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v 87 (177)
||+++|++|||||||+++|.++.+.. . ...+..............+.+||++|+..+...+...+..+|++++|
T Consensus 1 kI~V~G~~g~GKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~ilv 80 (119)
T PF08477_consen 1 KIVVLGDSGVGKTSLIRRLCGGEFPDNSVPEETSEITIGVDVIVVDGDRQSLQFWDFGGQEEFYSQHQFFLKKADAVILV 80 (119)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS--------SSTTSCEEEEEEEETTEEEEEEEEEESSSHCHHCTSHHHHHHSCEEEEE
T ss_pred CEEEECcCCCCHHHHHHHHhcCCCcccccccccCCCcEEEEEEEecCCceEEEEEecCccceecccccchhhcCcEEEEE
Confidence 79999999999999999999877661 1 11222223333334445699999999988887777778899999999
Q ss_pred EeCCCCCCHHHHHHH---HHHHHcCCCCCCCcEEEEeeCCC
Q 030429 88 VDAADRDSVPIARSE---LHELLMKPSLSGIPLLVLGNKID 125 (177)
Q Consensus 88 ~d~~~~~~~~~~~~~---~~~~~~~~~~~~~~~iiv~nK~D 125 (177)
||+++++++..+..+ +..+... ..+.|+++|+||.|
T Consensus 81 ~D~s~~~s~~~~~~~~~~l~~~~~~--~~~~piilv~nK~D 119 (119)
T PF08477_consen 81 YDLSDPESLEYLSQLLKWLKNIRKR--DKNIPIILVGNKSD 119 (119)
T ss_dssp EECCGHHHHHHHHHHHHHHHHHHHH--SSCSEEEEEEE-TC
T ss_pred EcCCChHHHHHHHHHHHHHHHHHcc--CCCCCEEEEEeccC
Confidence 999999999887444 4444332 24599999999998
|
They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A. |
| >COG1160 Predicted GTPases [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.90 E-value=4.8e-22 Score=147.40 Aligned_cols=159 Identities=19% Similarity=0.204 Sum_probs=123.0
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhcCC---CCCCCCCccceeEEEEEeCCEEEEEEecCCchh----------hH-HhHHH
Q 030429 11 QEMELSLIGLQNAGKTSLVNTIATGG---YSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQRR----------FR-TMWER 76 (177)
Q Consensus 11 ~~~~i~i~G~~~~GKSsli~~l~~~~---~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~----------~~-~~~~~ 76 (177)
..++|+++|.|++|||||+|++++.. .....+.|.......++.++..+.++||+|.++ |. .....
T Consensus 177 ~~ikiaiiGrPNvGKSsLiN~ilgeeR~Iv~~~aGTTRD~I~~~~e~~~~~~~liDTAGiRrk~ki~e~~E~~Sv~rt~~ 256 (444)
T COG1160 177 DPIKIAIIGRPNVGKSSLINAILGEERVIVSDIAGTTRDSIDIEFERDGRKYVLIDTAGIRRKGKITESVEKYSVARTLK 256 (444)
T ss_pred CceEEEEEeCCCCCchHHHHHhccCceEEecCCCCccccceeeeEEECCeEEEEEECCCCCcccccccceEEEeehhhHh
Confidence 56999999999999999999999665 344455677777778889999999999999432 21 11123
Q ss_pred HhcCCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccc--cCHHHHHHHhCcccccCCceeEEEe
Q 030429 77 YCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEA--LSKQALVDQLGLESITDREVCCYMI 154 (177)
Q Consensus 77 ~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (177)
.+..+|++++|+|++.+ +.+....+..+... .+.++++|+||+|+.+. ...++..+.+.........++.+++
T Consensus 257 aI~~a~vvllviDa~~~--~~~qD~~ia~~i~~---~g~~~vIvvNKWDl~~~~~~~~~~~k~~i~~~l~~l~~a~i~~i 331 (444)
T COG1160 257 AIERADVVLLVIDATEG--ISEQDLRIAGLIEE---AGRGIVIVVNKWDLVEEDEATMEEFKKKLRRKLPFLDFAPIVFI 331 (444)
T ss_pred HHhhcCEEEEEEECCCC--chHHHHHHHHHHHH---cCCCeEEEEEccccCCchhhHHHHHHHHHHHHhccccCCeEEEE
Confidence 46779999999999775 45555555555554 57899999999999875 4456666666665566678899999
Q ss_pred eecCCCChHHHHHHHHHHhh
Q 030429 155 SCKDSINIDAVIDWLIKHSK 174 (177)
Q Consensus 155 Sa~~~~~i~~l~~~l~~~~~ 174 (177)
||++|.+++++|+.+.....
T Consensus 332 SA~~~~~i~~l~~~i~~~~~ 351 (444)
T COG1160 332 SALTGQGLDKLFEAIKEIYE 351 (444)
T ss_pred EecCCCChHHHHHHHHHHHH
Confidence 99999999999999987654
|
|
| >CHL00189 infB translation initiation factor 2; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.3e-21 Score=155.35 Aligned_cols=159 Identities=19% Similarity=0.273 Sum_probs=111.8
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCC--CccceeEEE--EEe--CCEEEEEEecCCchhhHHhHHHHhcCCC
Q 030429 9 FKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMI--PTVGFNMRK--VTK--GNVTIKLWDLGGQRRFRTMWERYCRGVS 82 (177)
Q Consensus 9 ~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~--~t~~~~~~~--~~~--~~~~~~~~D~~g~~~~~~~~~~~~~~~d 82 (177)
.++..+|+++|.+++|||||++++....+..... .|....... +.. .+..+.+|||||+..|..++..++..+|
T Consensus 241 ~~r~p~V~IvGhvdvGKTSLld~L~~~~~~~~e~~GiTq~i~~~~v~~~~~~~~~kItfiDTPGhe~F~~mr~rg~~~aD 320 (742)
T CHL00189 241 INRPPIVTILGHVDHGKTTLLDKIRKTQIAQKEAGGITQKIGAYEVEFEYKDENQKIVFLDTPGHEAFSSMRSRGANVTD 320 (742)
T ss_pred cccCCEEEEECCCCCCHHHHHHHHHhccCccccCCccccccceEEEEEEecCCceEEEEEECCcHHHHHHHHHHHHHHCC
Confidence 4577899999999999999999998766543322 222222222 222 4589999999999999999988999999
Q ss_pred EEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccCHHHHHHHhCcccc----cCCceeEEEeeecC
Q 030429 83 AILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESI----TDREVCCYMISCKD 158 (177)
Q Consensus 83 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~Sa~~ 158 (177)
++++|+|+++....... ..+..+ . ..++|+++++||+|+.+. ..++..+.+..... ....++++++||++
T Consensus 321 iaILVVDA~dGv~~QT~-E~I~~~-k---~~~iPiIVViNKiDl~~~-~~e~v~~eL~~~~ll~e~~g~~vpvv~VSAkt 394 (742)
T CHL00189 321 IAILIIAADDGVKPQTI-EAINYI-Q---AANVPIIVAINKIDKANA-NTERIKQQLAKYNLIPEKWGGDTPMIPISASQ 394 (742)
T ss_pred EEEEEEECcCCCChhhH-HHHHHH-H---hcCceEEEEEECCCcccc-CHHHHHHHHHHhccchHhhCCCceEEEEECCC
Confidence 99999999875433222 222222 1 246899999999999763 23333333321110 12246899999999
Q ss_pred CCChHHHHHHHHHHh
Q 030429 159 SINIDAVIDWLIKHS 173 (177)
Q Consensus 159 ~~~i~~l~~~l~~~~ 173 (177)
|.|+++|+++|...+
T Consensus 395 G~GIdeLle~I~~l~ 409 (742)
T CHL00189 395 GTNIDKLLETILLLA 409 (742)
T ss_pred CCCHHHHHHhhhhhh
Confidence 999999999998754
|
|
| >COG1160 Predicted GTPases [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.89 E-value=5.2e-22 Score=147.24 Aligned_cols=149 Identities=22% Similarity=0.203 Sum_probs=109.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCC---CCCCCCccceeEEEEEeCCEEEEEEecCCchhh---------HHhHHHHhcC
Q 030429 13 MELSLIGLQNAGKTSLVNTIATGGY---SEDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRF---------RTMWERYCRG 80 (177)
Q Consensus 13 ~~i~i~G~~~~GKSsli~~l~~~~~---~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~---------~~~~~~~~~~ 80 (177)
..|+++|.||||||||+|||++... ....+-|..-.+......+..|.++||+|-+.. .......+..
T Consensus 4 ~~VAIVGRPNVGKSTLFNRL~g~r~AIV~D~pGvTRDr~y~~~~~~~~~f~lIDTgGl~~~~~~~l~~~i~~Qa~~Ai~e 83 (444)
T COG1160 4 PVVAIVGRPNVGKSTLFNRLTGRRIAIVSDTPGVTRDRIYGDAEWLGREFILIDTGGLDDGDEDELQELIREQALIAIEE 83 (444)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCeeeEeecCCCCccCCccceeEEcCceEEEEECCCCCcCCchHHHHHHHHHHHHHHHh
Confidence 5799999999999999999997663 444555666777778888889999999995422 2233446788
Q ss_pred CCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccCHHHHHHHhCcccccCCceeEEEeeecCCC
Q 030429 81 VSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCKDSI 160 (177)
Q Consensus 81 ~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 160 (177)
||++++|+|+.. ........+..++.. .++|+++|+||+|....+ ....+.+.+ ..-..+++||.+|.
T Consensus 84 ADvilfvVD~~~--Git~~D~~ia~~Lr~---~~kpviLvvNK~D~~~~e--~~~~efysl-----G~g~~~~ISA~Hg~ 151 (444)
T COG1160 84 ADVILFVVDGRE--GITPADEEIAKILRR---SKKPVILVVNKIDNLKAE--ELAYEFYSL-----GFGEPVPISAEHGR 151 (444)
T ss_pred CCEEEEEEeCCC--CCCHHHHHHHHHHHh---cCCCEEEEEEcccCchhh--hhHHHHHhc-----CCCCceEeehhhcc
Confidence 999999999944 344444455555443 469999999999987432 222222221 12258999999999
Q ss_pred ChHHHHHHHHHHh
Q 030429 161 NIDAVIDWLIKHS 173 (177)
Q Consensus 161 ~i~~l~~~l~~~~ 173 (177)
|+.+|++.+.+.+
T Consensus 152 Gi~dLld~v~~~l 164 (444)
T COG1160 152 GIGDLLDAVLELL 164 (444)
T ss_pred CHHHHHHHHHhhc
Confidence 9999999999886
|
|
| >PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.1e-21 Score=157.74 Aligned_cols=157 Identities=20% Similarity=0.192 Sum_probs=106.5
Q ss_pred ccccceeEEEEEcCCCCCHHHHHHHHhcCCC---CCCCCCccceeEEEEEeCCEEEEEEecCCchh--------hHHhHH
Q 030429 7 LFFKQEMELSLIGLQNAGKTSLVNTIATGGY---SEDMIPTVGFNMRKVTKGNVTIKLWDLGGQRR--------FRTMWE 75 (177)
Q Consensus 7 ~~~~~~~~i~i~G~~~~GKSsli~~l~~~~~---~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~--------~~~~~~ 75 (177)
+.+....+|+++|.+|||||||+|++++... ......|........+.++..+.+|||||... +.....
T Consensus 270 ~~~~~~~~V~IvG~~nvGKSSL~n~l~~~~~~iv~~~pGvT~d~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~ 349 (712)
T PRK09518 270 AGPKAVGVVAIVGRPNVGKSTLVNRILGRREAVVEDTPGVTRDRVSYDAEWAGTDFKLVDTGGWEADVEGIDSAIASQAQ 349 (712)
T ss_pred cccccCcEEEEECCCCCCHHHHHHHHhCCCceeecCCCCeeEEEEEEEEEECCEEEEEEeCCCcCCCCccHHHHHHHHHH
Confidence 3445567899999999999999999997643 11122233333334556788999999999653 334445
Q ss_pred HHhcCCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccCHHHHHHHhCcccccCCceeEEEee
Q 030429 76 RYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMIS 155 (177)
Q Consensus 76 ~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 155 (177)
.++..+|++++|+|+++. +......+...+.. .++|+++|+||+|+.+... ...+.+.. .. ...+++|
T Consensus 350 ~~~~~aD~iL~VvDa~~~--~~~~d~~i~~~Lr~---~~~pvIlV~NK~D~~~~~~--~~~~~~~l-g~----~~~~~iS 417 (712)
T PRK09518 350 IAVSLADAVVFVVDGQVG--LTSTDERIVRMLRR---AGKPVVLAVNKIDDQASEY--DAAEFWKL-GL----GEPYPIS 417 (712)
T ss_pred HHHHhCCEEEEEEECCCC--CCHHHHHHHHHHHh---cCCCEEEEEECcccccchh--hHHHHHHc-CC----CCeEEEE
Confidence 578899999999999764 33333333333333 4789999999999865321 12222211 11 1357899
Q ss_pred ecCCCChHHHHHHHHHHhhh
Q 030429 156 CKDSINIDAVIDWLIKHSKT 175 (177)
Q Consensus 156 a~~~~~i~~l~~~l~~~~~~ 175 (177)
|++|.|+++++++|.+.+.+
T Consensus 418 A~~g~GI~eLl~~i~~~l~~ 437 (712)
T PRK09518 418 AMHGRGVGDLLDEALDSLKV 437 (712)
T ss_pred CCCCCCchHHHHHHHHhccc
Confidence 99999999999999987743
|
|
| >KOG1673 consensus Ras GTPases [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.89 E-value=4.2e-23 Score=131.60 Aligned_cols=162 Identities=23% Similarity=0.401 Sum_probs=130.9
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEE----EEeCCEEEEEEecCCchhhHHhHHHHhcCCCEEEEE
Q 030429 12 EMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRK----VTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYV 87 (177)
Q Consensus 12 ~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~----~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v 87 (177)
.+||.++|++..|||||+-.++++.+...+.++.+.+... +..-.+.+.+||++|++++..+.+....++-+++++
T Consensus 20 slkv~llGD~qiGKTs~mvkYV~~~~de~~~q~~GvN~mdkt~~i~~t~IsfSIwdlgG~~~~~n~lPiac~dsvaIlFm 99 (205)
T KOG1673|consen 20 SLKVGLLGDAQIGKTSLMVKYVQNEYDEEYTQTLGVNFMDKTVSIRGTDISFSIWDLGGQREFINMLPIACKDSVAILFM 99 (205)
T ss_pred EEEEEeecccccCceeeehhhhcchhHHHHHHHhCccceeeEEEecceEEEEEEEecCCcHhhhccCceeecCcEEEEEE
Confidence 5899999999999999999999998888888888866655 234457899999999999999999999999999999
Q ss_pred EeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccc--cCHHHHHHHhCcccccCCceeEEEeeecCCCChHHH
Q 030429 88 VDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEA--LSKQALVDQLGLESITDREVCCYMISCKDSINIDAV 165 (177)
Q Consensus 88 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l 165 (177)
+|++.++++..+..|+...... +...+|++ |+||-|..-. .+.++.............+++.|+||+.++.|++.+
T Consensus 100 FDLt~r~TLnSi~~WY~QAr~~-NktAiPil-vGTKyD~fi~lp~e~Q~~I~~qar~YAk~mnAsL~F~Sts~sINv~KI 177 (205)
T KOG1673|consen 100 FDLTRRSTLNSIKEWYRQARGL-NKTAIPIL-VGTKYDLFIDLPPELQETISRQARKYAKVMNASLFFCSTSHSINVQKI 177 (205)
T ss_pred EecCchHHHHHHHHHHHHHhcc-CCccceEE-eccchHhhhcCCHHHHHHHHHHHHHHHHHhCCcEEEeeccccccHHHH
Confidence 9999999999999999988554 33557765 5999996432 223333333334444556678999999999999999
Q ss_pred HHHHHHHhhh
Q 030429 166 IDWLIKHSKT 175 (177)
Q Consensus 166 ~~~l~~~~~~ 175 (177)
|..+..++.+
T Consensus 178 FK~vlAklFn 187 (205)
T KOG1673|consen 178 FKIVLAKLFN 187 (205)
T ss_pred HHHHHHHHhC
Confidence 9999887754
|
|
| >cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.7e-21 Score=137.41 Aligned_cols=151 Identities=22% Similarity=0.242 Sum_probs=102.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCC--CCCccceeEEEEEeCCEEEEEEecCCchhhH-------HhHHHHhcCCCEE
Q 030429 14 ELSLIGLQNAGKTSLVNTIATGGYSED--MIPTVGFNMRKVTKGNVTIKLWDLGGQRRFR-------TMWERYCRGVSAI 84 (177)
Q Consensus 14 ~i~i~G~~~~GKSsli~~l~~~~~~~~--~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~-------~~~~~~~~~~d~~ 84 (177)
+|+++|++|||||||++++.+...... ...|.......+..++..+++||+||..+.. ......++.+|++
T Consensus 2 ~v~lvG~~~~GKStLl~~Ltg~~~~v~~~~~tT~~~~~g~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~~~~ad~i 81 (233)
T cd01896 2 RVALVGFPSVGKSTLLSKLTNTKSEVAAYEFTTLTCVPGVLEYKGAKIQLLDLPGIIEGAADGKGRGRQVIAVARTADLI 81 (233)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccccCCCCccccceEEEEEECCeEEEEEECCCcccccccchhHHHHHHHhhccCCEE
Confidence 789999999999999999997653222 2234445555566788999999999964322 2234568899999
Q ss_pred EEEEeCCCCCC-HHHHHHHHHH----------------------------------------HHc---------------
Q 030429 85 LYVVDAADRDS-VPIARSELHE----------------------------------------LLM--------------- 108 (177)
Q Consensus 85 i~v~d~~~~~~-~~~~~~~~~~----------------------------------------~~~--------------- 108 (177)
++|+|++++.. ...+...+.. ++.
T Consensus 82 l~V~D~t~~~~~~~~~~~~l~~~gi~l~~~~~~v~~~~~~~ggi~~~~~~~~~~~~~~~v~~~l~~~~i~~~~v~~~~~~ 161 (233)
T cd01896 82 LMVLDATKPEGHREILERELEGVGIRLNKRPPNITIKKKKKGGINITSTVPLTKLDEKTIKAILREYKIHNADVLIREDI 161 (233)
T ss_pred EEEecCCcchhHHHHHHHHHHHcCceecCCCCeEEEEEEecCCEEEeccCCCCCCCHHHHHHHHHHhCeeeEEEEEccCC
Confidence 99999987542 2222222210 000
Q ss_pred ---------CCCCCCCcEEEEeeCCCcccccCHHHHHHHhCcccccCCceeEEEeeecCCCChHHHHHHHHHHhh
Q 030429 109 ---------KPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCKDSINIDAVIDWLIKHSK 174 (177)
Q Consensus 109 ---------~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~ 174 (177)
......+|+++|+||+|+.+.++.+. +.. ...++++||+++.|++++++.+.+.+.
T Consensus 162 ~~~~~~~~~~~~~~y~p~iiV~NK~Dl~~~~~~~~----~~~------~~~~~~~SA~~g~gi~~l~~~i~~~L~ 226 (233)
T cd01896 162 TVDDLIDVIEGNRVYIPCLYVYNKIDLISIEELDL----LAR------QPNSVVISAEKGLNLDELKERIWDKLG 226 (233)
T ss_pred CHHHHHHHHhCCceEeeEEEEEECccCCCHHHHHH----Hhc------CCCEEEEcCCCCCCHHHHHHHHHHHhC
Confidence 00113469999999999976533221 111 124889999999999999999998764
|
GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding. |
| >PRK12317 elongation factor 1-alpha; Reviewed | Back alignment and domain information |
|---|
Probab=99.89 E-value=6.3e-22 Score=151.08 Aligned_cols=155 Identities=19% Similarity=0.153 Sum_probs=103.5
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHhcCC--C-------------------------------CCCCCCccceeEEEEEeC
Q 030429 9 FKQEMELSLIGLQNAGKTSLVNTIATGG--Y-------------------------------SEDMIPTVGFNMRKVTKG 55 (177)
Q Consensus 9 ~~~~~~i~i~G~~~~GKSsli~~l~~~~--~-------------------------------~~~~~~t~~~~~~~~~~~ 55 (177)
.+..++|+++|++++|||||+++|+... . .+....|.......++.+
T Consensus 3 ~k~~~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~~~~~~ 82 (425)
T PRK12317 3 EKPHLNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHKKFETD 82 (425)
T ss_pred CCCEEEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeEEEecC
Confidence 3567999999999999999999998321 0 012334555666667778
Q ss_pred CEEEEEEecCCchhhHHhHHHHhcCCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccC--H-
Q 030429 56 NVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALS--K- 132 (177)
Q Consensus 56 ~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~--~- 132 (177)
++.+.+|||||+++|.......+..+|++++|+|++++........+...+.... ...|+++++||+|+.+... .
T Consensus 83 ~~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~~~~~~~~~~~--~~~~iivviNK~Dl~~~~~~~~~ 160 (425)
T PRK12317 83 KYYFTIVDCPGHRDFVKNMITGASQADAAVLVVAADDAGGVMPQTREHVFLARTL--GINQLIVAINKMDAVNYDEKRYE 160 (425)
T ss_pred CeEEEEEECCCcccchhhHhhchhcCCEEEEEEEcccCCCCCcchHHHHHHHHHc--CCCeEEEEEEccccccccHHHHH
Confidence 8999999999998887655566788999999999987322222222222222221 1246999999999975211 1
Q ss_pred ---HHHHHHhCcccccCCceeEEEeeecCCCChHHH
Q 030429 133 ---QALVDQLGLESITDREVCCYMISCKDSINIDAV 165 (177)
Q Consensus 133 ---~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l 165 (177)
+++.+.+....+.....+++++||++|.|++++
T Consensus 161 ~~~~~i~~~l~~~g~~~~~~~ii~iSA~~g~gi~~~ 196 (425)
T PRK12317 161 EVKEEVSKLLKMVGYKPDDIPFIPVSAFEGDNVVKK 196 (425)
T ss_pred HHHHHHHHHHHhhCCCcCcceEEEeecccCCCcccc
Confidence 122222222222223468999999999999873
|
|
| >COG0486 ThdF Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.7e-21 Score=144.89 Aligned_cols=153 Identities=20% Similarity=0.236 Sum_probs=113.8
Q ss_pred cccceeEEEEEcCCCCCHHHHHHHHhcCC---CCCCCCCccceeEEEEEeCCEEEEEEecCCchhhHHhH--------HH
Q 030429 8 FFKQEMELSLIGLQNAGKTSLVNTIATGG---YSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTMW--------ER 76 (177)
Q Consensus 8 ~~~~~~~i~i~G~~~~GKSsli~~l~~~~---~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~--------~~ 76 (177)
..++.++++++|.||+|||||+|.|++.. +....+.|-......++.+++.+.++||+|.+...... ..
T Consensus 213 ilr~G~kvvIiG~PNvGKSSLLNaL~~~d~AIVTdI~GTTRDviee~i~i~G~pv~l~DTAGiRet~d~VE~iGIeRs~~ 292 (454)
T COG0486 213 ILREGLKVVIIGRPNVGKSSLLNALLGRDRAIVTDIAGTTRDVIEEDINLNGIPVRLVDTAGIRETDDVVERIGIERAKK 292 (454)
T ss_pred hhhcCceEEEECCCCCcHHHHHHHHhcCCceEecCCCCCccceEEEEEEECCEEEEEEecCCcccCccHHHHHHHHHHHH
Confidence 34678999999999999999999999765 34445567777888899999999999999966543333 23
Q ss_pred HhcCCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccCHHHHHHHhCcccccCCceeEEEeee
Q 030429 77 YCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISC 156 (177)
Q Consensus 77 ~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 156 (177)
.++.||.+++|+|++.+.+-.... +.. ....++|+++|.||.|+......... .+ ....+++.+|+
T Consensus 293 ~i~~ADlvL~v~D~~~~~~~~d~~--~~~----~~~~~~~~i~v~NK~DL~~~~~~~~~--~~------~~~~~~i~iSa 358 (454)
T COG0486 293 AIEEADLVLFVLDASQPLDKEDLA--LIE----LLPKKKPIIVVLNKADLVSKIELESE--KL------ANGDAIISISA 358 (454)
T ss_pred HHHhCCEEEEEEeCCCCCchhhHH--HHH----hcccCCCEEEEEechhcccccccchh--hc------cCCCceEEEEe
Confidence 478899999999998863222211 111 22247899999999999876543222 11 11226899999
Q ss_pred cCCCChHHHHHHHHHHhh
Q 030429 157 KDSINIDAVIDWLIKHSK 174 (177)
Q Consensus 157 ~~~~~i~~l~~~l~~~~~ 174 (177)
++++|++.|.+.|.+...
T Consensus 359 ~t~~Gl~~L~~~i~~~~~ 376 (454)
T COG0486 359 KTGEGLDALREAIKQLFG 376 (454)
T ss_pred cCccCHHHHHHHHHHHHh
Confidence 999999999999988764
|
|
| >cd04166 CysN_ATPS CysN_ATPS subfamily | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.1e-21 Score=136.48 Aligned_cols=148 Identities=16% Similarity=0.100 Sum_probs=94.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCC-C--------------------------------CCCCccceeEEEEEeCCEEEE
Q 030429 14 ELSLIGLQNAGKTSLVNTIATGGYS-E--------------------------------DMIPTVGFNMRKVTKGNVTIK 60 (177)
Q Consensus 14 ~i~i~G~~~~GKSsli~~l~~~~~~-~--------------------------------~~~~t~~~~~~~~~~~~~~~~ 60 (177)
||+++|.+|+|||||+++|+...-. . ....|.......+..++..+.
T Consensus 1 ~i~iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~ 80 (208)
T cd04166 1 RFLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFSTPKRKFI 80 (208)
T ss_pred CEEEEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEEecCCceEE
Confidence 6899999999999999999742210 0 022233344444566788999
Q ss_pred EEecCCchhhHHhHHHHhcCCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccC--HHHHHHH
Q 030429 61 LWDLGGQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALS--KQALVDQ 138 (177)
Q Consensus 61 ~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~--~~~~~~~ 138 (177)
+|||||+.+|.......+..+|++++|+|++++..-. .... ..+.... ...++++|+||+|+.+... .....+.
T Consensus 81 liDTpG~~~~~~~~~~~~~~ad~~llVvD~~~~~~~~-~~~~-~~~~~~~--~~~~iIvviNK~D~~~~~~~~~~~i~~~ 156 (208)
T cd04166 81 IADTPGHEQYTRNMVTGASTADLAILLVDARKGVLEQ-TRRH-SYILSLL--GIRHVVVAVNKMDLVDYSEEVFEEIVAD 156 (208)
T ss_pred EEECCcHHHHHHHHHHhhhhCCEEEEEEECCCCccHh-HHHH-HHHHHHc--CCCcEEEEEEchhcccCCHHHHHHHHHH
Confidence 9999999988776677788999999999998753221 1121 2222221 1245788999999875321 1122222
Q ss_pred hCcc--cccCCceeEEEeeecCCCChHHH
Q 030429 139 LGLE--SITDREVCCYMISCKDSINIDAV 165 (177)
Q Consensus 139 ~~~~--~~~~~~~~~~~~Sa~~~~~i~~l 165 (177)
+... .......+++++||++|.|+++.
T Consensus 157 ~~~~~~~~~~~~~~ii~iSA~~g~ni~~~ 185 (208)
T cd04166 157 YLAFAAKLGIEDITFIPISALDGDNVVSR 185 (208)
T ss_pred HHHHHHHcCCCCceEEEEeCCCCCCCccC
Confidence 2110 11112356999999999998753
|
CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN. |
| >TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha | Back alignment and domain information |
|---|
Probab=99.88 E-value=5.2e-22 Score=151.50 Aligned_cols=154 Identities=18% Similarity=0.139 Sum_probs=102.7
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHhc--CCCC-------------------------------CCCCCccceeEEEEEeC
Q 030429 9 FKQEMELSLIGLQNAGKTSLVNTIAT--GGYS-------------------------------EDMIPTVGFNMRKVTKG 55 (177)
Q Consensus 9 ~~~~~~i~i~G~~~~GKSsli~~l~~--~~~~-------------------------------~~~~~t~~~~~~~~~~~ 55 (177)
.+..++|+++|+.++|||||+.+|+. +... +....|.......+..+
T Consensus 4 ~~~~~~v~i~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~~~~~~~~ 83 (426)
T TIGR00483 4 EKEHINVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAHWKFETD 83 (426)
T ss_pred CCceeEEEEEeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEEEEEEccC
Confidence 35679999999999999999999984 2111 11223444555556678
Q ss_pred CEEEEEEecCCchhhHHhHHHHhcCCCEEEEEEeCCCCCCHHHHHH-HHHHHHcCCCCCCCcEEEEeeCCCcccccC--H
Q 030429 56 NVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARS-ELHELLMKPSLSGIPLLVLGNKIDKSEALS--K 132 (177)
Q Consensus 56 ~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~--~ 132 (177)
++.+.+||+||+++|.......+..+|++++|+|+++.++...... +...+.... ...|+++|+||+|+.+... .
T Consensus 84 ~~~i~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~t~~~~~~~~~~--~~~~iIVviNK~Dl~~~~~~~~ 161 (426)
T TIGR00483 84 KYEVTIVDCPGHRDFIKNMITGASQADAAVLVVAVGDGEFEVQPQTREHAFLARTL--GINQLIVAINKMDSVNYDEEEF 161 (426)
T ss_pred CeEEEEEECCCHHHHHHHHHhhhhhCCEEEEEEECCCCCcccCCchHHHHHHHHHc--CCCeEEEEEEChhccCccHHHH
Confidence 8999999999999987766667788999999999998753321111 111122221 2357999999999974211 1
Q ss_pred ----HHHHHHhCcccccCCceeEEEeeecCCCChHH
Q 030429 133 ----QALVDQLGLESITDREVCCYMISCKDSINIDA 164 (177)
Q Consensus 133 ----~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 164 (177)
+++.+.+.........++++++||++|.|+++
T Consensus 162 ~~~~~ei~~~~~~~g~~~~~~~~i~iSA~~g~ni~~ 197 (426)
T TIGR00483 162 EAIKKEVSNLIKKVGYNPDTVPFIPISAWNGDNVIK 197 (426)
T ss_pred HHHHHHHHHHHHHcCCCcccceEEEeeccccccccc
Confidence 12222222222222346899999999999986
|
This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels. |
| >cd01884 EF_Tu EF-Tu subfamily | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.3e-21 Score=133.10 Aligned_cols=146 Identities=18% Similarity=0.137 Sum_probs=97.8
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCC------------------CCCCCCccceeEEEEEeCCEEEEEEecCCchhhHHh
Q 030429 12 EMELSLIGLQNAGKTSLVNTIATGGY------------------SEDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTM 73 (177)
Q Consensus 12 ~~~i~i~G~~~~GKSsli~~l~~~~~------------------~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~ 73 (177)
.++|+++|..++|||||+++|+.... ......|.......++.++.++.++||||+..|...
T Consensus 2 ~~ni~iiGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~~~~~ 81 (195)
T cd01884 2 HVNVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITINTAHVEYETANRHYAHVDCPGHADYIKN 81 (195)
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHHhcccccccccccccCChhhhhcCccEEeeeeEecCCCeEEEEEECcCHHHHHHH
Confidence 57999999999999999999984310 001222333333345567788999999999998887
Q ss_pred HHHHhcCCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCc-EEEEeeCCCcccccCH-H----HHHHHhCcccccCC
Q 030429 74 WERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIP-LLVLGNKIDKSEALSK-Q----ALVDQLGLESITDR 147 (177)
Q Consensus 74 ~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-~iiv~nK~D~~~~~~~-~----~~~~~~~~~~~~~~ 147 (177)
....+..+|++++|+|++..-. ......+..+... ++| +++++||+|+....+. + ++.+.+....+...
T Consensus 82 ~~~~~~~~D~~ilVvda~~g~~-~~~~~~~~~~~~~----~~~~iIvviNK~D~~~~~~~~~~~~~~i~~~l~~~g~~~~ 156 (195)
T cd01884 82 MITGAAQMDGAILVVSATDGPM-PQTREHLLLARQV----GVPYIVVFLNKADMVDDEELLELVEMEVRELLSKYGFDGD 156 (195)
T ss_pred HHHHhhhCCEEEEEEECCCCCc-HHHHHHHHHHHHc----CCCcEEEEEeCCCCCCcHHHHHHHHHHHHHHHHHhccccc
Confidence 7888899999999999976422 2223333333222 466 7788999998643221 1 23333332223334
Q ss_pred ceeEEEeeecCCCCh
Q 030429 148 EVCCYMISCKDSINI 162 (177)
Q Consensus 148 ~~~~~~~Sa~~~~~i 162 (177)
.++++++||.+|.|+
T Consensus 157 ~v~iipiSa~~g~n~ 171 (195)
T cd01884 157 NTPIVRGSALKALEG 171 (195)
T ss_pred CCeEEEeeCccccCC
Confidence 679999999999875
|
This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation. |
| >cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.4e-21 Score=136.99 Aligned_cols=147 Identities=18% Similarity=0.124 Sum_probs=97.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC--C-------------------------------CCCCCCccceeEEEEEeCCEEEE
Q 030429 14 ELSLIGLQNAGKTSLVNTIATGG--Y-------------------------------SEDMIPTVGFNMRKVTKGNVTIK 60 (177)
Q Consensus 14 ~i~i~G~~~~GKSsli~~l~~~~--~-------------------------------~~~~~~t~~~~~~~~~~~~~~~~ 60 (177)
+|+++|++++|||||+.+|+... . ......|.......+..++..+.
T Consensus 1 nv~i~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~~~~~~~~~~~~i~ 80 (219)
T cd01883 1 NLVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKFETEKYRFT 80 (219)
T ss_pred CEEEecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeecceEEEeeCCeEEE
Confidence 58999999999999999996210 0 00112233444555677889999
Q ss_pred EEecCCchhhHHhHHHHhcCCCEEEEEEeCCCCCC------HHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccc----c
Q 030429 61 LWDLGGQRRFRTMWERYCRGVSAILYVVDAADRDS------VPIARSELHELLMKPSLSGIPLLVLGNKIDKSEA----L 130 (177)
Q Consensus 61 ~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~~------~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~----~ 130 (177)
+|||||+..|.......+..+|++++|+|+++... .......+... ... ...|+++|+||+|+... .
T Consensus 81 liDtpG~~~~~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~iiivvNK~Dl~~~~~~~~ 157 (219)
T cd01883 81 ILDAPGHRDFVPNMITGASQADVAVLVVDARKGEFEAGFEKGGQTREHALLA-RTL--GVKQLIVAVNKMDDVTVNWSEE 157 (219)
T ss_pred EEECCChHHHHHHHHHHhhhCCEEEEEEECCCCccccccccccchHHHHHHH-HHc--CCCeEEEEEEccccccccccHH
Confidence 99999998888777777888999999999987421 11222222222 211 23689999999999732 1
Q ss_pred CHHHHHHHh----CcccccCCceeEEEeeecCCCChH
Q 030429 131 SKQALVDQL----GLESITDREVCCYMISCKDSINID 163 (177)
Q Consensus 131 ~~~~~~~~~----~~~~~~~~~~~~~~~Sa~~~~~i~ 163 (177)
..+++.+.+ .........++++++||++|.|++
T Consensus 158 ~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~tg~gi~ 194 (219)
T cd01883 158 RYDEIKKELSPFLKKVGYNPKDVPFIPISGLTGDNLI 194 (219)
T ss_pred HHHHHHHHHHHHHHHcCCCcCCceEEEeecCcCCCCC
Confidence 123333322 222223345789999999999986
|
EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in |
| >TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma | Back alignment and domain information |
|---|
Probab=99.88 E-value=2e-21 Score=147.18 Aligned_cols=162 Identities=15% Similarity=0.156 Sum_probs=105.3
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcCCCCCC-----CCCccceeEEE----------------E----Ee------CCEE
Q 030429 10 KQEMELSLIGLQNAGKTSLVNTIATGGYSED-----MIPTVGFNMRK----------------V----TK------GNVT 58 (177)
Q Consensus 10 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~-----~~~t~~~~~~~----------------~----~~------~~~~ 58 (177)
...++|+++|.+++|||||+++|.+...... ..-|....+.. . +. .+..
T Consensus 2 ~~~~~i~iiG~~~~GKSTL~~~Lt~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (406)
T TIGR03680 2 QPEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELKRGISIRLGYADAEIYKCPECDGPECYTTEPVCPNCGSETELLRR 81 (406)
T ss_pred CceEEEEEEccCCCCHHHHHHHHhCeecccCHhHHHcCceeEecccccccccccccCccccccccccccccccccccccE
Confidence 3578999999999999999999974321110 01111111100 0 01 2468
Q ss_pred EEEEecCCchhhHHhHHHHhcCCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccCHHHHHHH
Q 030429 59 IKLWDLGGQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQ 138 (177)
Q Consensus 59 ~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~ 138 (177)
+.+||+||+++|...+...+..+|++++|+|+++..........+..+... ...|+++++||+|+.+.+...+..+.
T Consensus 82 i~liDtPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~~~~qt~e~l~~l~~~---gi~~iIVvvNK~Dl~~~~~~~~~~~~ 158 (406)
T TIGR03680 82 VSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTKEHLMALEII---GIKNIVIVQNKIDLVSKEKALENYEE 158 (406)
T ss_pred EEEEECCCHHHHHHHHHHHHHHCCEEEEEEECCCCccccchHHHHHHHHHc---CCCeEEEEEEccccCCHHHHHHHHHH
Confidence 999999999999888888888899999999998753122223333322111 23578999999999764332222222
Q ss_pred hCc--ccccCCceeEEEeeecCCCChHHHHHHHHHHhh
Q 030429 139 LGL--ESITDREVCCYMISCKDSINIDAVIDWLIKHSK 174 (177)
Q Consensus 139 ~~~--~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~ 174 (177)
+.. .......++++++||++|.|+++++++|...+.
T Consensus 159 i~~~l~~~~~~~~~ii~vSA~~g~gi~~L~e~L~~~l~ 196 (406)
T TIGR03680 159 IKEFVKGTVAENAPIIPVSALHNANIDALLEAIEKFIP 196 (406)
T ss_pred HHhhhhhcccCCCeEEEEECCCCCChHHHHHHHHHhCC
Confidence 211 111123568999999999999999999998653
|
eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA. |
| >PRK05433 GTP-binding protein LepA; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=6.2e-21 Score=150.04 Aligned_cols=157 Identities=19% Similarity=0.201 Sum_probs=108.4
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhcCC--CCC---------------CCCCccceeEEEEE-----eCCEEEEEEecCCch
Q 030429 11 QEMELSLIGLQNAGKTSLVNTIATGG--YSE---------------DMIPTVGFNMRKVT-----KGNVTIKLWDLGGQR 68 (177)
Q Consensus 11 ~~~~i~i~G~~~~GKSsli~~l~~~~--~~~---------------~~~~t~~~~~~~~~-----~~~~~~~~~D~~g~~ 68 (177)
+--+++++|+.++|||||+.+|+... ... ....|.......+. ..++.+++|||||+.
T Consensus 6 ~iRNi~IiGhvd~GKTTL~~rLl~~tg~i~~~~~~~~~lD~~~~ErerGiTi~~~~v~~~~~~~dg~~~~lnLiDTPGh~ 85 (600)
T PRK05433 6 NIRNFSIIAHIDHGKSTLADRLIELTGTLSEREMKAQVLDSMDLERERGITIKAQAVRLNYKAKDGETYILNLIDTPGHV 85 (600)
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHhcCCCcccccccccccCchHHhhcCCcccccEEEEEEEccCCCcEEEEEEECCCcH
Confidence 44589999999999999999998521 110 11122222222232 236889999999999
Q ss_pred hhHHhHHHHhcCCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccCHHHHHHHhCcccccCCc
Q 030429 69 RFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDRE 148 (177)
Q Consensus 69 ~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~ 148 (177)
+|...+..++..+|++++|+|+++.........|.. ... .+.|+++|+||+|+.+.. .++..+.+... .....
T Consensus 86 dF~~~v~~sl~~aD~aILVVDas~gv~~qt~~~~~~-~~~----~~lpiIvViNKiDl~~a~-~~~v~~ei~~~-lg~~~ 158 (600)
T PRK05433 86 DFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYL-ALE----NDLEIIPVLNKIDLPAAD-PERVKQEIEDV-IGIDA 158 (600)
T ss_pred HHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHH-HHH----CCCCEEEEEECCCCCccc-HHHHHHHHHHH-hCCCc
Confidence 999989999999999999999988765554444332 222 368999999999986532 22222222111 11112
Q ss_pred eeEEEeeecCCCChHHHHHHHHHHhh
Q 030429 149 VCCYMISCKDSINIDAVIDWLIKHSK 174 (177)
Q Consensus 149 ~~~~~~Sa~~~~~i~~l~~~l~~~~~ 174 (177)
..++++||++|.|+++++++|.+.+.
T Consensus 159 ~~vi~iSAktG~GI~~Ll~~I~~~lp 184 (600)
T PRK05433 159 SDAVLVSAKTGIGIEEVLEAIVERIP 184 (600)
T ss_pred ceEEEEecCCCCCHHHHHHHHHHhCc
Confidence 24899999999999999999998765
|
|
| >cd04168 TetM_like Tet(M)-like subfamily | Back alignment and domain information |
|---|
Probab=99.88 E-value=7.1e-21 Score=134.47 Aligned_cols=156 Identities=19% Similarity=0.199 Sum_probs=110.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCC--------C------------CCCCCccceeEEEEEeCCEEEEEEecCCchhhHHh
Q 030429 14 ELSLIGLQNAGKTSLVNTIATGGY--------S------------EDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTM 73 (177)
Q Consensus 14 ~i~i~G~~~~GKSsli~~l~~~~~--------~------------~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~ 73 (177)
+|+++|++|+|||||+++++...- . .....+.......+..++.++++|||||+.+|...
T Consensus 1 ni~i~G~~~~GKTtL~~~ll~~~g~i~~~g~v~~~~~~~D~~~~e~~rg~ti~~~~~~~~~~~~~i~liDTPG~~~f~~~ 80 (237)
T cd04168 1 NIGILAHVDAGKTTLTESLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSAVASFQWEDTKVNLIDTPGHMDFIAE 80 (237)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCccccccccCCcccCCCchhHhhCCCceeeeeEEEEECCEEEEEEeCCCccchHHH
Confidence 589999999999999999984211 0 01111333444556788899999999999999988
Q ss_pred HHHHhcCCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccc---CHHHHHHHhCc---------
Q 030429 74 WERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEAL---SKQALVDQLGL--------- 141 (177)
Q Consensus 74 ~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~---~~~~~~~~~~~--------- 141 (177)
+..+++.+|++++|+|+++.... ....++..... .++|+++++||+|+.... ..+++.+.++.
T Consensus 81 ~~~~l~~aD~~IlVvd~~~g~~~-~~~~~~~~~~~----~~~P~iivvNK~D~~~a~~~~~~~~i~~~~~~~~~~~~~p~ 155 (237)
T cd04168 81 VERSLSVLDGAILVISAVEGVQA-QTRILWRLLRK----LNIPTIIFVNKIDRAGADLEKVYQEIKEKLSSDIVPMQKVG 155 (237)
T ss_pred HHHHHHHhCeEEEEEeCCCCCCH-HHHHHHHHHHH----cCCCEEEEEECccccCCCHHHHHHHHHHHHCCCeEEEECCc
Confidence 88899999999999999876433 33344444332 368999999999987421 11222222211
Q ss_pred -----------------------------------------------ccccCCceeEEEeeecCCCChHHHHHHHHHHhh
Q 030429 142 -----------------------------------------------ESITDREVCCYMISCKDSINIDAVIDWLIKHSK 174 (177)
Q Consensus 142 -----------------------------------------------~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~ 174 (177)
.......+|++..||.++.|++.|++.+.+.+.
T Consensus 156 ~~~~~~~~~~~~~~l~e~vae~dd~l~e~yl~~~~~~~~el~~~l~~~~~~~~~~Pv~~gsa~~~~Gv~~ll~~~~~~~p 235 (237)
T cd04168 156 LAPNICETNEIDDEFWETLAEGDDELLEKYLEGGPIEELELDNELSARIAKRKVFPVYHGSALKGIGIEELLEGITKLFP 235 (237)
T ss_pred EeeeeeeeeeccHHHHHHHhcCCHHHHHHHhCCCCCCHHHHHHHHHHHHHhCCeEEEEEccccCCcCHHHHHHHHHHhcC
Confidence 000122578888999999999999999998764
|
Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB. |
| >PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways | Back alignment and domain information |
|---|
Probab=99.87 E-value=4.7e-21 Score=123.22 Aligned_cols=134 Identities=20% Similarity=0.266 Sum_probs=93.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEeCCEEEEEEecCC----chhhHHhHHHHhcCCCEEEEEEe
Q 030429 14 ELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGG----QRRFRTMWERYCRGVSAILYVVD 89 (177)
Q Consensus 14 ~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g----~~~~~~~~~~~~~~~d~~i~v~d 89 (177)
||+++|+.|||||||+++|.+.... +..|..+.+. + .++|||| +..+...+.....++|++++|.|
T Consensus 3 rimliG~~g~GKTTL~q~L~~~~~~--~~KTq~i~~~-----~---~~IDTPGEyiE~~~~y~aLi~ta~dad~V~ll~d 72 (143)
T PF10662_consen 3 RIMLIGPSGSGKTTLAQALNGEEIR--YKKTQAIEYY-----D---NTIDTPGEYIENPRFYHALIVTAQDADVVLLLQD 72 (143)
T ss_pred eEEEECCCCCCHHHHHHHHcCCCCC--cCccceeEec-----c---cEEECChhheeCHHHHHHHHHHHhhCCEEEEEec
Confidence 7999999999999999999854332 2222222221 1 3469999 45566656666778999999999
Q ss_pred CCCCCC-HHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcc-cccCHHHHHHHhCcccccCCceeEEEeeecCCCChHHHHH
Q 030429 90 AADRDS-VPIARSELHELLMKPSLSGIPLLVLGNKIDKS-EALSKQALVDQLGLESITDREVCCYMISCKDSINIDAVID 167 (177)
Q Consensus 90 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~ 167 (177)
++++.+ ++.- + ...-..|+|-|+||+|+. +....+...+.+...... .+|++|+.+|+|+++|.+
T Consensus 73 at~~~~~~pP~---f------a~~f~~pvIGVITK~Dl~~~~~~i~~a~~~L~~aG~~----~if~vS~~~~eGi~eL~~ 139 (143)
T PF10662_consen 73 ATEPRSVFPPG---F------ASMFNKPVIGVITKIDLPSDDANIERAKKWLKNAGVK----EIFEVSAVTGEGIEELKD 139 (143)
T ss_pred CCCCCccCCch---h------hcccCCCEEEEEECccCccchhhHHHHHHHHHHcCCC----CeEEEECCCCcCHHHHHH
Confidence 998643 3221 1 111357999999999998 444555555555443332 369999999999999999
Q ss_pred HHH
Q 030429 168 WLI 170 (177)
Q Consensus 168 ~l~ 170 (177)
+|.
T Consensus 140 ~L~ 142 (143)
T PF10662_consen 140 YLE 142 (143)
T ss_pred HHh
Confidence 874
|
Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process |
| >PRK04000 translation initiation factor IF-2 subunit gamma; Validated | Back alignment and domain information |
|---|
Probab=99.87 E-value=6.2e-21 Score=144.52 Aligned_cols=165 Identities=16% Similarity=0.163 Sum_probs=104.8
Q ss_pred ccccceeEEEEEcCCCCCHHHHHHHHhcCCCCC-----CCCCccceeEEE--------------E--E----e-C-----
Q 030429 7 LFFKQEMELSLIGLQNAGKTSLVNTIATGGYSE-----DMIPTVGFNMRK--------------V--T----K-G----- 55 (177)
Q Consensus 7 ~~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~-----~~~~t~~~~~~~--------------~--~----~-~----- 55 (177)
...+..++|+++|+.++|||||+.+|.+.-... ....|....... + . . +
T Consensus 4 ~~~~~~~ni~v~Gh~d~GKSTL~~~L~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (411)
T PRK04000 4 EKVQPEVNIGMVGHVDHGKTTLVQALTGVWTDRHSEELKRGITIRLGYADATIRKCPDCEEPEAYTTEPKCPNCGSETEL 83 (411)
T ss_pred ccCCCcEEEEEEccCCCCHHHHHHHhhCeecccCHhHHhcCcEEEecccccccccccccCcccccccccccccccccccc
Confidence 345677999999999999999999996421111 111222221110 0 0 0 1
Q ss_pred CEEEEEEecCCchhhHHhHHHHhcCCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccCHHHH
Q 030429 56 NVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQAL 135 (177)
Q Consensus 56 ~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~ 135 (177)
...+++|||||+.+|.......+..+|++++|+|++++.........+..+... ...|+++|+||+|+.+.....+.
T Consensus 84 ~~~i~liDtPG~~~f~~~~~~~~~~~D~~llVVDa~~~~~~~~t~~~l~~l~~~---~i~~iiVVlNK~Dl~~~~~~~~~ 160 (411)
T PRK04000 84 LRRVSFVDAPGHETLMATMLSGAALMDGAILVIAANEPCPQPQTKEHLMALDII---GIKNIVIVQNKIDLVSKERALEN 160 (411)
T ss_pred ccEEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCCChhHHHHHHHHHHc---CCCcEEEEEEeeccccchhHHHH
Confidence 368999999999988776666677789999999998753212222222222111 22478999999999765332221
Q ss_pred HHHhCcc--cccCCceeEEEeeecCCCChHHHHHHHHHHhh
Q 030429 136 VDQLGLE--SITDREVCCYMISCKDSINIDAVIDWLIKHSK 174 (177)
Q Consensus 136 ~~~~~~~--~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~ 174 (177)
.+.+... .......+++++||++|.|+++|++.|.+.+.
T Consensus 161 ~~~i~~~l~~~~~~~~~ii~vSA~~g~gI~~L~~~L~~~l~ 201 (411)
T PRK04000 161 YEQIKEFVKGTVAENAPIIPVSALHKVNIDALIEAIEEEIP 201 (411)
T ss_pred HHHHHHHhccccCCCCeEEEEECCCCcCHHHHHHHHHHhCC
Confidence 2221111 11123468999999999999999999998654
|
|
| >TIGR01394 TypA_BipA GTP-binding protein TypA/BipA | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.2e-20 Score=147.97 Aligned_cols=156 Identities=22% Similarity=0.307 Sum_probs=113.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhc--CCCCC----------------CCCCccceeEEEEEeCCEEEEEEecCCchhhHHhHH
Q 030429 14 ELSLIGLQNAGKTSLVNTIAT--GGYSE----------------DMIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTMWE 75 (177)
Q Consensus 14 ~i~i~G~~~~GKSsli~~l~~--~~~~~----------------~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~ 75 (177)
+|+++|+.++|||||+++|+. +.+.. ....|+......+..+++.+++|||||+.+|...+.
T Consensus 3 NIaIiGHvd~GKTTLv~~LL~~sg~~~~~~~v~~~~~D~~~~ErerGiTI~~~~~~v~~~~~kinlIDTPGh~DF~~ev~ 82 (594)
T TIGR01394 3 NIAIIAHVDHGKTTLVDALLKQSGTFRANEAVAERVMDSNDLERERGITILAKNTAIRYNGTKINIVDTPGHADFGGEVE 82 (594)
T ss_pred EEEEEcCCCCCHHHHHHHHHHhcCCCcccccceeecccCchHHHhCCccEEeeeEEEEECCEEEEEEECCCHHHHHHHHH
Confidence 799999999999999999985 22211 112344444455778899999999999999998889
Q ss_pred HHhcCCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccC---HHHHHHHhCcccc--cCCcee
Q 030429 76 RYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALS---KQALVDQLGLESI--TDREVC 150 (177)
Q Consensus 76 ~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~---~~~~~~~~~~~~~--~~~~~~ 150 (177)
.++..+|++++|+|+++. .......++...... ++|+++|+||+|+.+... .+++.+.+..... ....++
T Consensus 83 ~~l~~aD~alLVVDa~~G-~~~qT~~~l~~a~~~----~ip~IVviNKiD~~~a~~~~v~~ei~~l~~~~g~~~e~l~~p 157 (594)
T TIGR01394 83 RVLGMVDGVLLLVDASEG-PMPQTRFVLKKALEL----GLKPIVVINKIDRPSARPDEVVDEVFDLFAELGADDEQLDFP 157 (594)
T ss_pred HHHHhCCEEEEEEeCCCC-CcHHHHHHHHHHHHC----CCCEEEEEECCCCCCcCHHHHHHHHHHHHHhhccccccccCc
Confidence 999999999999999764 345555666665443 689999999999865321 1222222221111 112468
Q ss_pred EEEeeecCCC----------ChHHHHHHHHHHhh
Q 030429 151 CYMISCKDSI----------NIDAVIDWLIKHSK 174 (177)
Q Consensus 151 ~~~~Sa~~~~----------~i~~l~~~l~~~~~ 174 (177)
++++||++|. |++.+|+.+.+.+.
T Consensus 158 vl~~SA~~g~~~~~~~~~~~gi~~Lld~Iv~~lP 191 (594)
T TIGR01394 158 IVYASGRAGWASLDLDDPSDNMAPLFDAIVRHVP 191 (594)
T ss_pred EEechhhcCcccccCcccccCHHHHHHHHHHhCC
Confidence 9999999995 79999999998764
|
This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown. |
| >PRK09554 feoB ferrous iron transport protein B; Reviewed | Back alignment and domain information |
|---|
Probab=99.87 E-value=8.7e-21 Score=152.38 Aligned_cols=152 Identities=23% Similarity=0.250 Sum_probs=104.7
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhcCCCCCC--CCCccceeEEEEEeCCEEEEEEecCCchhhHHh----------HHHHh
Q 030429 11 QEMELSLIGLQNAGKTSLVNTIATGGYSED--MIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTM----------WERYC 78 (177)
Q Consensus 11 ~~~~i~i~G~~~~GKSsli~~l~~~~~~~~--~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~----------~~~~~ 78 (177)
+.++|+++|+||||||||+|++.+...... ...|.+.....+..++..+++||+||..++... ...++
T Consensus 2 ~~~~IaLvG~pNvGKSTLfN~Ltg~~~~vgn~pGvTve~k~g~~~~~~~~i~lvDtPG~ysl~~~~~~~s~~E~i~~~~l 81 (772)
T PRK09554 2 KKLTIGLIGNPNSGKTTLFNQLTGARQRVGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIACHYI 81 (772)
T ss_pred CceEEEEECCCCCCHHHHHHHHhCCCCccCCCCCceEeeEEEEEEcCceEEEEEECCCccccccccccccHHHHHHHHHH
Confidence 357899999999999999999987654221 222333444446677889999999997655321 12232
Q ss_pred --cCCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccCHHHHHHHhCcccccCCceeEEEeee
Q 030429 79 --RGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISC 156 (177)
Q Consensus 79 --~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 156 (177)
..+|++++|+|+++.+. ...++..+.+ .++|+++|+||+|..+........+.+... .+.+++++|+
T Consensus 82 ~~~~aD~vI~VvDat~ler---~l~l~~ql~e----~giPvIvVlNK~Dl~~~~~i~id~~~L~~~----LG~pVvpiSA 150 (772)
T PRK09554 82 LSGDADLLINVVDASNLER---NLYLTLQLLE----LGIPCIVALNMLDIAEKQNIRIDIDALSAR----LGCPVIPLVS 150 (772)
T ss_pred hccCCCEEEEEecCCcchh---hHHHHHHHHH----cCCCEEEEEEchhhhhccCcHHHHHHHHHH----hCCCEEEEEe
Confidence 47899999999987543 2334444433 368999999999987543322222222111 1247999999
Q ss_pred cCCCChHHHHHHHHHHh
Q 030429 157 KDSINIDAVIDWLIKHS 173 (177)
Q Consensus 157 ~~~~~i~~l~~~l~~~~ 173 (177)
++|+|++++++.+.+..
T Consensus 151 ~~g~GIdeL~~~I~~~~ 167 (772)
T PRK09554 151 TRGRGIEALKLAIDRHQ 167 (772)
T ss_pred ecCCCHHHHHHHHHHhh
Confidence 99999999999998764
|
|
| >TIGR00437 feoB ferrous iron transporter FeoB | Back alignment and domain information |
|---|
Probab=99.87 E-value=5.2e-21 Score=150.34 Aligned_cols=140 Identities=25% Similarity=0.277 Sum_probs=97.7
Q ss_pred cCCCCCHHHHHHHHhcCCCCCCCCC--ccceeEEEEEeCCEEEEEEecCCchhhHHh------HHHHh--cCCCEEEEEE
Q 030429 19 GLQNAGKTSLVNTIATGGYSEDMIP--TVGFNMRKVTKGNVTIKLWDLGGQRRFRTM------WERYC--RGVSAILYVV 88 (177)
Q Consensus 19 G~~~~GKSsli~~l~~~~~~~~~~~--t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~------~~~~~--~~~d~~i~v~ 88 (177)
|.+|||||||+|++.+........+ |.+.....+..++..+++|||||+.++... .+.++ .++|++++|+
T Consensus 1 G~pNvGKSSL~N~Ltg~~~~v~n~pG~Tv~~~~~~i~~~~~~i~lvDtPG~~~~~~~s~~e~v~~~~l~~~~aDvvI~Vv 80 (591)
T TIGR00437 1 GNPNVGKSTLFNALTGANQTVGNWPGVTVEKKEGKLGFQGEDIEIVDLPGIYSLTTFSLEEEVARDYLLNEKPDLVVNVV 80 (591)
T ss_pred CCCCCCHHHHHHHHhCCCCeecCCCCeEEEEEEEEEEECCeEEEEEECCCccccCccchHHHHHHHHHhhcCCCEEEEEe
Confidence 8999999999999997765333333 333333445667888999999998766432 23333 4789999999
Q ss_pred eCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccCH----HHHHHHhCcccccCCceeEEEeeecCCCChHH
Q 030429 89 DAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSK----QALVDQLGLESITDREVCCYMISCKDSINIDA 164 (177)
Q Consensus 89 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 164 (177)
|+++.+ ....+..++.+ .++|+++|+||+|+.+.... +++.+.+ +.+++++||++|.|+++
T Consensus 81 Dat~le---r~l~l~~ql~~----~~~PiIIVlNK~Dl~~~~~i~~d~~~L~~~l--------g~pvv~tSA~tg~Gi~e 145 (591)
T TIGR00437 81 DASNLE---RNLYLTLQLLE----LGIPMILALNLVDEAEKKGIRIDEEKLEERL--------GVPVVPTSATEGRGIER 145 (591)
T ss_pred cCCcch---hhHHHHHHHHh----cCCCEEEEEehhHHHHhCCChhhHHHHHHHc--------CCCEEEEECCCCCCHHH
Confidence 998743 22233333332 36899999999998654322 2222222 24799999999999999
Q ss_pred HHHHHHHHh
Q 030429 165 VIDWLIKHS 173 (177)
Q Consensus 165 l~~~l~~~~ 173 (177)
+++++.+.+
T Consensus 146 L~~~i~~~~ 154 (591)
T TIGR00437 146 LKDAIRKAI 154 (591)
T ss_pred HHHHHHHHh
Confidence 999998754
|
FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum. |
| >cd04165 GTPBP1_like GTPBP1-like | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.1e-20 Score=130.96 Aligned_cols=154 Identities=21% Similarity=0.263 Sum_probs=101.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCCC----------------Cc-------ccee-----------------EEEEE
Q 030429 14 ELSLIGLQNAGKTSLVNTIATGGYSEDMI----------------PT-------VGFN-----------------MRKVT 53 (177)
Q Consensus 14 ~i~i~G~~~~GKSsli~~l~~~~~~~~~~----------------~t-------~~~~-----------------~~~~~ 53 (177)
||+++|+.++|||||++++..+.+..... .+ .++. .....
T Consensus 1 ~v~~~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~E~~~g~t~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 80 (224)
T cd04165 1 RVAVVGNVDAGKSTLLGVLTQGELDNGRGKARLNLFRHKHEVESGRTSSVSNEILGFDSDGEVVNYPDNHLSESDIEICE 80 (224)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCcCCCCCeEEeehhhhhhhhhcCchhhhhhhhcccCCCCceecCCCCccccccceeee
Confidence 58999999999999999999654432111 01 1111 01233
Q ss_pred eCCEEEEEEecCCchhhHHhHHHHhc--CCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccC
Q 030429 54 KGNVTIKLWDLGGQRRFRTMWERYCR--GVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALS 131 (177)
Q Consensus 54 ~~~~~~~~~D~~g~~~~~~~~~~~~~--~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~ 131 (177)
.++..+.++|+||+++|.......+. .+|++++|+|+..... ......+..+ .. .++|+++|+||+|+.+...
T Consensus 81 ~~~~~i~liDtpG~~~~~~~~~~~~~~~~~D~~llVvda~~g~~-~~d~~~l~~l-~~---~~ip~ivvvNK~D~~~~~~ 155 (224)
T cd04165 81 KSSKLVTFIDLAGHERYLKTTLFGLTGYAPDYAMLVVAANAGII-GMTKEHLGLA-LA---LNIPVFVVVTKIDLAPANI 155 (224)
T ss_pred eCCcEEEEEECCCcHHHHHHHHHhhcccCCCEEEEEEECCCCCc-HHHHHHHHHH-HH---cCCCEEEEEECccccCHHH
Confidence 45678999999999998766555554 6899999999876532 2223333333 22 3689999999999876533
Q ss_pred HHHHH----HHhCccc---------------------ccCCceeEEEeeecCCCChHHHHHHHHHH
Q 030429 132 KQALV----DQLGLES---------------------ITDREVCCYMISCKDSINIDAVIDWLIKH 172 (177)
Q Consensus 132 ~~~~~----~~~~~~~---------------------~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~ 172 (177)
..+.. +.+.... ......++|.+|+.+|.|+++|.+.|...
T Consensus 156 ~~~~~~~l~~~L~~~g~~~~p~~~~~~~~~~~~~~~~~~~~~~pi~~vSavtg~Gi~~L~~~L~~l 221 (224)
T cd04165 156 LQETLKDLKRILKVPGVRKLPVPVKSDDDVVLAASNFSSERIVPIFQVSNVTGEGLDLLHAFLNLL 221 (224)
T ss_pred HHHHHHHHHHHhcCCCccccceeeecccceeehhhcCCccccCcEEEeeCCCccCHHHHHHHHHhc
Confidence 33322 2332111 11234589999999999999999988653
|
Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and |
| >COG2229 Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.87 E-value=3.8e-20 Score=121.67 Aligned_cols=157 Identities=25% Similarity=0.348 Sum_probs=122.0
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHhcCCCCC------------CCCCccceeEEEEEeCC-EEEEEEecCCchhhHHhHH
Q 030429 9 FKQEMELSLIGLQNAGKTSLVNTIATGGYSE------------DMIPTVGFNMRKVTKGN-VTIKLWDLGGQRRFRTMWE 75 (177)
Q Consensus 9 ~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~------------~~~~t~~~~~~~~~~~~-~~~~~~D~~g~~~~~~~~~ 75 (177)
.-...||+++|+.++||||+++++....... ....|...++......+ ..+.+++||||++|..+|.
T Consensus 7 k~~~~KIvv~G~~~agKtTfv~~~s~k~~v~t~~~~~~~s~k~kr~tTva~D~g~~~~~~~~~v~LfgtPGq~RF~fm~~ 86 (187)
T COG2229 7 KMIETKIVVIGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMDFGSIELDEDTGVHLFGTPGQERFKFMWE 86 (187)
T ss_pred cccceeEEEEcccccchhhHHHHhhccccceeeccccccccccccceeEeecccceEEcCcceEEEecCCCcHHHHHHHH
Confidence 3456899999999999999999998655211 11234455555555554 8899999999999999999
Q ss_pred HHhcCCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccCHHHHHHHhCcccccCCceeEEEee
Q 030429 76 RYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMIS 155 (177)
Q Consensus 76 ~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 155 (177)
.+++++..+++++|.+.+..+ .....+ .+.... ..+|++++.||.|+.+....+++.+.+.... ...+.++++
T Consensus 87 ~l~~ga~gaivlVDss~~~~~-~a~~ii-~f~~~~--~~ip~vVa~NK~DL~~a~ppe~i~e~l~~~~---~~~~vi~~~ 159 (187)
T COG2229 87 ILSRGAVGAIVLVDSSRPITF-HAEEII-DFLTSR--NPIPVVVAINKQDLFDALPPEKIREALKLEL---LSVPVIEID 159 (187)
T ss_pred HHhCCcceEEEEEecCCCcch-HHHHHH-HHHhhc--cCCCEEEEeeccccCCCCCHHHHHHHHHhcc---CCCceeeee
Confidence 999999999999999998777 333333 332331 1299999999999999888888888776543 345899999
Q ss_pred ecCCCChHHHHHHHHHH
Q 030429 156 CKDSINIDAVIDWLIKH 172 (177)
Q Consensus 156 a~~~~~i~~l~~~l~~~ 172 (177)
|.++++..+.++.+...
T Consensus 160 a~e~~~~~~~L~~ll~~ 176 (187)
T COG2229 160 ATEGEGARDQLDVLLLK 176 (187)
T ss_pred cccchhHHHHHHHHHhh
Confidence 99999999999888765
|
|
| >cd01876 YihA_EngB The YihA (EngB) subfamily | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.3e-20 Score=126.56 Aligned_cols=154 Identities=21% Similarity=0.256 Sum_probs=97.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEE--EEEeCCEEEEEEecCCchh----------hHHhHHHHhc--
Q 030429 14 ELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMR--KVTKGNVTIKLWDLGGQRR----------FRTMWERYCR-- 79 (177)
Q Consensus 14 ~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~--~~~~~~~~~~~~D~~g~~~----------~~~~~~~~~~-- 79 (177)
.|+++|.+|+|||||++.++++.+.....++.+.+.. ....+. .+.+|||||... +......++.
T Consensus 1 ~i~l~G~~g~GKTtL~~~l~~~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (170)
T cd01876 1 EIAFAGRSNVGKSSLINALTNRKKLARTSKTPGKTQLINFFNVND-KFRLVDLPGYGYAKVSKEVKEKWGKLIEEYLENR 79 (170)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCceeeecCCCCcceeEEEEEccC-eEEEecCCCccccccCHHHHHHHHHHHHHHHHhC
Confidence 4899999999999999999965554444444332222 122222 889999999432 3333344443
Q ss_pred -CCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccCHHHHHHHhCcccc-cCCceeEEEeeec
Q 030429 80 -GVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESI-TDREVCCYMISCK 157 (177)
Q Consensus 80 -~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Sa~ 157 (177)
..+++++++|.+...+.... .+...+.. .+.|+++++||+|+.................. .....+++++|++
T Consensus 80 ~~~~~~~~v~d~~~~~~~~~~--~~~~~l~~---~~~~vi~v~nK~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Sa~ 154 (170)
T cd01876 80 ENLKGVVLLIDSRHGPTEIDL--EMLDWLEE---LGIPFLVVLTKADKLKKSELAKALKEIKKELKLFEIDPPIILFSSL 154 (170)
T ss_pred hhhhEEEEEEEcCcCCCHhHH--HHHHHHHH---cCCCEEEEEEchhcCChHHHHHHHHHHHHHHHhccCCCceEEEecC
Confidence 35788999998765322221 11122222 25899999999999655433322222221111 2334578999999
Q ss_pred CCCChHHHHHHHHHHh
Q 030429 158 DSINIDAVIDWLIKHS 173 (177)
Q Consensus 158 ~~~~i~~l~~~l~~~~ 173 (177)
++.|+++++++|.+.+
T Consensus 155 ~~~~~~~l~~~l~~~~ 170 (170)
T cd01876 155 KGQGIDELRALIEKWL 170 (170)
T ss_pred CCCCHHHHHHHHHHhC
Confidence 9999999999998753
|
This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target. |
| >TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2 | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.7e-20 Score=146.63 Aligned_cols=156 Identities=19% Similarity=0.203 Sum_probs=103.0
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCCCCC----CCccceeEEEEEe----------------CCEEEEEEecCCchhhH
Q 030429 12 EMELSLIGLQNAGKTSLVNTIATGGYSEDM----IPTVGFNMRKVTK----------------GNVTIKLWDLGGQRRFR 71 (177)
Q Consensus 12 ~~~i~i~G~~~~GKSsli~~l~~~~~~~~~----~~t~~~~~~~~~~----------------~~~~~~~~D~~g~~~~~ 71 (177)
..-|+++|++++|||||++++.+..+.... .++.+........ ....+.+|||||++.|.
T Consensus 4 ~piV~IiG~~d~GKTSLln~l~~~~v~~~e~ggiTq~iG~~~v~~~~~~~~~~~~~~~~~v~~~~~~l~~iDTpG~e~f~ 83 (590)
T TIGR00491 4 SPIVSVLGHVDHGKTTLLDKIRGSAVAKREAGGITQHIGATEIPMDVIEGICGDLLKKFKIRLKIPGLLFIDTPGHEAFT 83 (590)
T ss_pred CCEEEEECCCCCCHHHHHHHHhccccccccCCceecccCeeEeeeccccccccccccccccccccCcEEEEECCCcHhHH
Confidence 346999999999999999999977654332 2233322222111 11238899999999999
Q ss_pred HhHHHHhcCCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccC--------------HHHHH-
Q 030429 72 TMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALS--------------KQALV- 136 (177)
Q Consensus 72 ~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~--------------~~~~~- 136 (177)
.++..++..+|++++|+|+++....... ..+. +... .+.|+++++||+|+.+... ..+..
T Consensus 84 ~l~~~~~~~aD~~IlVvD~~~g~~~qt~-e~i~-~l~~---~~vpiIVv~NK~Dl~~~~~~~~~~~f~e~sak~~~~v~~ 158 (590)
T TIGR00491 84 NLRKRGGALADLAILIVDINEGFKPQTQ-EALN-ILRM---YKTPFVVAANKIDRIPGWRSHEGRPFMESFSKQEIQVQQ 158 (590)
T ss_pred HHHHHHHhhCCEEEEEEECCcCCCHhHH-HHHH-HHHH---cCCCEEEEEECCCccchhhhccCchHHHHHHhhhHHHHH
Confidence 9888889999999999999874322221 1112 2222 3689999999999964210 00010
Q ss_pred ----------HHhCcccc----------cCCceeEEEeeecCCCChHHHHHHHHHH
Q 030429 137 ----------DQLGLESI----------TDREVCCYMISCKDSINIDAVIDWLIKH 172 (177)
Q Consensus 137 ----------~~~~~~~~----------~~~~~~~~~~Sa~~~~~i~~l~~~l~~~ 172 (177)
.++....+ .....+++++||++|+|+++|+++|...
T Consensus 159 ~~~~~~~~lv~~l~~~G~~~e~~~~i~~~~~~v~iVpVSA~tGeGideLl~~l~~l 214 (590)
T TIGR00491 159 NLDTKVYNLVIKLHEEGFEAERFDRVTDFTKTVAIIPISAITGEGIPELLTMLAGL 214 (590)
T ss_pred HHHHHHHHHHHHHHhcCccHHhhhhhhhcCCCceEEEeecCCCCChhHHHHHHHHH
Confidence 01111111 1235789999999999999999998754
|
This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region. |
| >PRK10218 GTP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.6e-20 Score=146.11 Aligned_cols=159 Identities=21% Similarity=0.253 Sum_probs=111.6
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhc--CCCCCC----------------CCCccceeEEEEEeCCEEEEEEecCCchhhHH
Q 030429 11 QEMELSLIGLQNAGKTSLVNTIAT--GGYSED----------------MIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRT 72 (177)
Q Consensus 11 ~~~~i~i~G~~~~GKSsli~~l~~--~~~~~~----------------~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~ 72 (177)
+--||+++|+.++|||||+++|+. +.+... ...|.......+..+++.+++|||||+.+|..
T Consensus 4 ~iRnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~v~D~~~~E~erGiTi~~~~~~i~~~~~~inliDTPG~~df~~ 83 (607)
T PRK10218 4 KLRNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIKWNDYRINIVDTPGHADFGG 83 (607)
T ss_pred CceEEEEECCCCCcHHHHHHHHHHhcCCcccccccceeeeccccccccCceEEEEEEEEEecCCEEEEEEECCCcchhHH
Confidence 446899999999999999999996 323221 11122233334567889999999999999999
Q ss_pred hHHHHhcCCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccC---HHHHHHHhCcccc--cCC
Q 030429 73 MWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALS---KQALVDQLGLESI--TDR 147 (177)
Q Consensus 73 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~---~~~~~~~~~~~~~--~~~ 147 (177)
.+..+++.+|++++|+|+++... .....++..... .++|.++++||+|...... .+++.+.+..... ...
T Consensus 84 ~v~~~l~~aDg~ILVVDa~~G~~-~qt~~~l~~a~~----~gip~IVviNKiD~~~a~~~~vl~ei~~l~~~l~~~~~~~ 158 (607)
T PRK10218 84 EVERVMSMVDSVLLVVDAFDGPM-PQTRFVTKKAFA----YGLKPIVVINKVDRPGARPDWVVDQVFDLFVNLDATDEQL 158 (607)
T ss_pred HHHHHHHhCCEEEEEEecccCcc-HHHHHHHHHHHH----cCCCEEEEEECcCCCCCchhHHHHHHHHHHhccCcccccc
Confidence 99999999999999999977532 233444444433 3688999999999865322 2233333321111 123
Q ss_pred ceeEEEeeecCCC----------ChHHHHHHHHHHhh
Q 030429 148 EVCCYMISCKDSI----------NIDAVIDWLIKHSK 174 (177)
Q Consensus 148 ~~~~~~~Sa~~~~----------~i~~l~~~l~~~~~ 174 (177)
.++++++||.+|. |+..|++.|.+.+.
T Consensus 159 ~~PVi~~SA~~G~~~~~~~~~~~~i~~Lld~Ii~~iP 195 (607)
T PRK10218 159 DFPIVYASALNGIAGLDHEDMAEDMTPLYQAIVDHVP 195 (607)
T ss_pred CCCEEEeEhhcCcccCCccccccchHHHHHHHHHhCC
Confidence 4689999999998 58899998887764
|
|
| >PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.9e-20 Score=146.50 Aligned_cols=156 Identities=20% Similarity=0.236 Sum_probs=105.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC---CCCC--CCCccceeEEEEEe-CCEEEEEEecCCchhhHHhHHHHhcCCCEEEEE
Q 030429 14 ELSLIGLQNAGKTSLVNTIATGG---YSED--MIPTVGFNMRKVTK-GNVTIKLWDLGGQRRFRTMWERYCRGVSAILYV 87 (177)
Q Consensus 14 ~i~i~G~~~~GKSsli~~l~~~~---~~~~--~~~t~~~~~~~~~~-~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v 87 (177)
-|+++|+.++|||||+++|.+.. +... ...|+...+..+.. ++..+.+||+||+++|...+...+.++|++++|
T Consensus 2 ii~~~GhvdhGKTtLi~aLtg~~~dr~~eE~~rGiTI~l~~~~~~~~~g~~i~~IDtPGhe~fi~~m~~g~~~~D~~lLV 81 (614)
T PRK10512 2 IIATAGHVDHGKTTLLQAITGVNADRLPEEKKRGMTIDLGYAYWPQPDGRVLGFIDVPGHEKFLSNMLAGVGGIDHALLV 81 (614)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCccchhcccCCceEEeeeEEEecCCCcEEEEEECCCHHHHHHHHHHHhhcCCEEEEE
Confidence 58999999999999999998532 2222 23444444444432 456789999999999987777788999999999
Q ss_pred EeCCCCCCHHHHHHHHHHHHcCCCCCCCc-EEEEeeCCCcccccCHHHHHHHhCccc--ccCCceeEEEeeecCCCChHH
Q 030429 88 VDAADRDSVPIARSELHELLMKPSLSGIP-LLVLGNKIDKSEALSKQALVDQLGLES--ITDREVCCYMISCKDSINIDA 164 (177)
Q Consensus 88 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-~iiv~nK~D~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~Sa~~~~~i~~ 164 (177)
+|+++... +.....+. ++.. .++| +++|+||+|+.+.+..+...+.+.... ......+++++||++|.|+++
T Consensus 82 Vda~eg~~-~qT~ehl~-il~~---lgi~~iIVVlNKiDlv~~~~~~~v~~ei~~~l~~~~~~~~~ii~VSA~tG~gI~~ 156 (614)
T PRK10512 82 VACDDGVM-AQTREHLA-ILQL---TGNPMLTVALTKADRVDEARIAEVRRQVKAVLREYGFAEAKLFVTAATEGRGIDA 156 (614)
T ss_pred EECCCCCc-HHHHHHHH-HHHH---cCCCeEEEEEECCccCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEeCCCCCCCHH
Confidence 99976422 22222222 2222 2345 579999999976433333333332111 111345799999999999999
Q ss_pred HHHHHHHHhh
Q 030429 165 VIDWLIKHSK 174 (177)
Q Consensus 165 l~~~l~~~~~ 174 (177)
|++.|.+...
T Consensus 157 L~~~L~~~~~ 166 (614)
T PRK10512 157 LREHLLQLPE 166 (614)
T ss_pred HHHHHHHhhc
Confidence 9999987654
|
|
| >PRK12736 elongation factor Tu; Reviewed | Back alignment and domain information |
|---|
Probab=99.86 E-value=3.4e-20 Score=140.03 Aligned_cols=169 Identities=17% Similarity=0.116 Sum_probs=111.6
Q ss_pred CceeecccccceeEEEEEcCCCCCHHHHHHHHhcCCCC------------------CCCCCccceeEEEEEeCCEEEEEE
Q 030429 1 MYLHISLFFKQEMELSLIGLQNAGKTSLVNTIATGGYS------------------EDMIPTVGFNMRKVTKGNVTIKLW 62 (177)
Q Consensus 1 m~~~~~~~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~------------------~~~~~t~~~~~~~~~~~~~~~~~~ 62 (177)
|.+...-..+..++|+++|+.++|||||+++|++.... ....-|.......+..++..+.++
T Consensus 1 ~~~~~~~~~k~~~ni~i~Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~~~~~~~~~~~~~~i~~i 80 (394)
T PRK12736 1 MAKEKFDRSKPHVNIGTIGHVDHGKTTLTAAITKVLAERGLNQAKDYDSIDAAPEEKERGITINTAHVEYETEKRHYAHV 80 (394)
T ss_pred CchhhhccCCCeeEEEEEccCCCcHHHHHHHHHhhhhhhccccccchhhhcCCHHHHhcCccEEEEeeEecCCCcEEEEE
Confidence 44444455677899999999999999999999852110 012223333333444567889999
Q ss_pred ecCCchhhHHhHHHHhcCCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCc-EEEEeeCCCcccccCHH-----HHH
Q 030429 63 DLGGQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIP-LLVLGNKIDKSEALSKQ-----ALV 136 (177)
Q Consensus 63 D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-~iiv~nK~D~~~~~~~~-----~~~ 136 (177)
||||+.+|.......+..+|++++|+|+++... ......+..+.. .++| +++++||+|+.+.++.. ++.
T Consensus 81 DtPGh~~f~~~~~~~~~~~d~~llVvd~~~g~~-~~t~~~~~~~~~----~g~~~~IvviNK~D~~~~~~~~~~i~~~i~ 155 (394)
T PRK12736 81 DCPGHADYVKNMITGAAQMDGAILVVAATDGPM-PQTREHILLARQ----VGVPYLVVFLNKVDLVDDEELLELVEMEVR 155 (394)
T ss_pred ECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCc-hhHHHHHHHHHH----cCCCEEEEEEEecCCcchHHHHHHHHHHHH
Confidence 999999988777777888999999999976422 222333333322 2577 67889999997533221 222
Q ss_pred HHhCcccccCCceeEEEeeecCCC--------ChHHHHHHHHHHhh
Q 030429 137 DQLGLESITDREVCCYMISCKDSI--------NIDAVIDWLIKHSK 174 (177)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~Sa~~~~--------~i~~l~~~l~~~~~ 174 (177)
+.+....+.....+++++||.+|. +++++++.|.+.+.
T Consensus 156 ~~l~~~~~~~~~~~ii~vSa~~g~~~~~~~~~~i~~Ll~~l~~~lp 201 (394)
T PRK12736 156 ELLSEYDFPGDDIPVIRGSALKALEGDPKWEDAIMELMDAVDEYIP 201 (394)
T ss_pred HHHHHhCCCcCCccEEEeeccccccCCCcchhhHHHHHHHHHHhCC
Confidence 222222222235689999999983 68889888887653
|
|
| >KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.8e-20 Score=131.29 Aligned_cols=164 Identities=21% Similarity=0.237 Sum_probs=111.1
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHhcCCCCCC---CCCccceeEEEEEeCCEEEEEEecCCc------hhhHH------h
Q 030429 9 FKQEMELSLIGLQNAGKTSLVNTIATGGYSED---MIPTVGFNMRKVTKGNVTIKLWDLGGQ------RRFRT------M 73 (177)
Q Consensus 9 ~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~---~~~t~~~~~~~~~~~~~~~~~~D~~g~------~~~~~------~ 73 (177)
..+.++|+++|.|++|||||.|.+.+...... ...|.......+..+..++.++||||. .+..- -
T Consensus 69 ~~k~L~vavIG~PNvGKStLtN~mig~kv~~vS~K~~TTr~~ilgi~ts~eTQlvf~DTPGlvs~~~~r~~~l~~s~lq~ 148 (379)
T KOG1423|consen 69 AQKSLYVAVIGAPNVGKSTLTNQMIGQKVSAVSRKVHTTRHRILGIITSGETQLVFYDTPGLVSKKMHRRHHLMMSVLQN 148 (379)
T ss_pred cceEEEEEEEcCCCcchhhhhhHhhCCccccccccccceeeeeeEEEecCceEEEEecCCcccccchhhhHHHHHHhhhC
Confidence 46779999999999999999999998775433 334555566667788999999999992 12211 1
Q ss_pred HHHHhcCCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccC-----------------HHHHH
Q 030429 74 WERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALS-----------------KQALV 136 (177)
Q Consensus 74 ~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~-----------------~~~~~ 136 (177)
....+..+|.+++|+|+++...... .+.+..+..+ .++|-++|+||+|...... ..++.
T Consensus 149 ~~~a~q~AD~vvVv~Das~tr~~l~-p~vl~~l~~y---s~ips~lvmnkid~~k~k~~Ll~l~~~Lt~g~l~~~kl~v~ 224 (379)
T KOG1423|consen 149 PRDAAQNADCVVVVVDASATRTPLH-PRVLHMLEEY---SKIPSILVMNKIDKLKQKRLLLNLKDLLTNGELAKLKLEVQ 224 (379)
T ss_pred HHHHHhhCCEEEEEEeccCCcCccC-hHHHHHHHHH---hcCCceeeccchhcchhhhHHhhhHHhccccccchhhhhHH
Confidence 1234677999999999987432221 1222222222 4689999999999764321 12233
Q ss_pred HHhCccc---------ccCCceeEEEeeecCCCChHHHHHHHHHHhhhc
Q 030429 137 DQLGLES---------ITDREVCCYMISCKDSINIDAVIDWLIKHSKTA 176 (177)
Q Consensus 137 ~~~~~~~---------~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~ 176 (177)
+.....- .+..+-.+|.+||+.|+|++++.++|...+...
T Consensus 225 ~~f~~~p~~~~~~~~~gwshfe~vF~vSaL~G~GikdlkqyLmsqa~~g 273 (379)
T KOG1423|consen 225 EKFTDVPSDEKWRTICGWSHFERVFMVSALYGEGIKDLKQYLMSQAPPG 273 (379)
T ss_pred HHhccCCcccccccccCcccceeEEEEecccccCHHHHHHHHHhcCCCC
Confidence 3332111 122244689999999999999999999887643
|
|
| >PRK12735 elongation factor Tu; Reviewed | Back alignment and domain information |
|---|
Probab=99.85 E-value=4.1e-20 Score=139.70 Aligned_cols=168 Identities=18% Similarity=0.121 Sum_probs=111.3
Q ss_pred CceeecccccceeEEEEEcCCCCCHHHHHHHHhcC-------CC-----------CCCCCCccceeEEEEEeCCEEEEEE
Q 030429 1 MYLHISLFFKQEMELSLIGLQNAGKTSLVNTIATG-------GY-----------SEDMIPTVGFNMRKVTKGNVTIKLW 62 (177)
Q Consensus 1 m~~~~~~~~~~~~~i~i~G~~~~GKSsli~~l~~~-------~~-----------~~~~~~t~~~~~~~~~~~~~~~~~~ 62 (177)
|.+.+.-..+..++|+++|.+++|||||+++|++. .+ .....-|.......++.++.++.++
T Consensus 1 ~~~~~~~~~~~~~~i~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rGiT~~~~~~~~~~~~~~i~~i 80 (396)
T PRK12735 1 MAKEKFERTKPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGGEAKAYDQIDNAPEEKARGITINTSHVEYETANRHYAHV 80 (396)
T ss_pred CchhhcCCCCCeEEEEEECcCCCCHHHHHHHHHHhhhhcCCcccchhhhccCChhHHhcCceEEEeeeEEcCCCcEEEEE
Confidence 55566667788899999999999999999999852 00 0011123333333355567789999
Q ss_pred ecCCchhhHHhHHHHhcCCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEE-EEeeCCCcccccCH-H----HHH
Q 030429 63 DLGGQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLL-VLGNKIDKSEALSK-Q----ALV 136 (177)
Q Consensus 63 D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i-iv~nK~D~~~~~~~-~----~~~ 136 (177)
||||+.+|.......+..+|++++|+|+.+... ......+..+.. .++|.+ +++||+|+.+.++. + ++.
T Consensus 81 DtPGh~~f~~~~~~~~~~aD~~llVvda~~g~~-~qt~e~l~~~~~----~gi~~iivvvNK~Dl~~~~~~~~~~~~ei~ 155 (396)
T PRK12735 81 DCPGHADYVKNMITGAAQMDGAILVVSAADGPM-PQTREHILLARQ----VGVPYIVVFLNKCDMVDDEELLELVEMEVR 155 (396)
T ss_pred ECCCHHHHHHHHHhhhccCCEEEEEEECCCCCc-hhHHHHHHHHHH----cCCCeEEEEEEecCCcchHHHHHHHHHHHH
Confidence 999999887777777889999999999976432 222233333322 357755 57999999753222 1 222
Q ss_pred HHhCcccccCCceeEEEeeecCCC----------ChHHHHHHHHHHh
Q 030429 137 DQLGLESITDREVCCYMISCKDSI----------NIDAVIDWLIKHS 173 (177)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~Sa~~~~----------~i~~l~~~l~~~~ 173 (177)
+.+....+.....+++++||.+|. ++.+|++.|.+.+
T Consensus 156 ~~l~~~~~~~~~~~ii~~Sa~~g~n~~~~~~w~~~~~~Ll~~l~~~~ 202 (396)
T PRK12735 156 ELLSKYDFPGDDTPIIRGSALKALEGDDDEEWEAKILELMDAVDSYI 202 (396)
T ss_pred HHHHHcCCCcCceeEEecchhccccCCCCCcccccHHHHHHHHHhcC
Confidence 222221122234789999999984 6788988888764
|
|
| >COG0218 Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.1e-19 Score=122.05 Aligned_cols=160 Identities=23% Similarity=0.325 Sum_probs=107.3
Q ss_pred ccccceeEEEEEcCCCCCHHHHHHHHhcCCC----CCCCCCccceeEEEEEeCCEEEEEEecCC----------chhhHH
Q 030429 7 LFFKQEMELSLIGLQNAGKTSLVNTIATGGY----SEDMIPTVGFNMRKVTKGNVTIKLWDLGG----------QRRFRT 72 (177)
Q Consensus 7 ~~~~~~~~i~i~G~~~~GKSsli~~l~~~~~----~~~~~~t~~~~~~~~~~~~~~~~~~D~~g----------~~~~~~ 72 (177)
+.......|+++|.+++|||||+|++++..- ...++.|..+++..+... +.++|.|| .+....
T Consensus 19 ~P~~~~~EIaF~GRSNVGKSSlIN~l~~~k~LArtSktPGrTq~iNff~~~~~---~~lVDlPGYGyAkv~k~~~e~w~~ 95 (200)
T COG0218 19 YPEDDLPEIAFAGRSNVGKSSLINALTNQKNLARTSKTPGRTQLINFFEVDDE---LRLVDLPGYGYAKVPKEVKEKWKK 95 (200)
T ss_pred CCCCCCcEEEEEccCcccHHHHHHHHhCCcceeecCCCCCccceeEEEEecCc---EEEEeCCCcccccCCHHHHHHHHH
Confidence 3445667999999999999999999998552 233334544555554432 78889999 222333
Q ss_pred hHHHHhcC---CCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccCHH----HHHHHhCccccc
Q 030429 73 MWERYCRG---VSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQ----ALVDQLGLESIT 145 (177)
Q Consensus 73 ~~~~~~~~---~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~----~~~~~~~~~~~~ 145 (177)
+...|++. ..++++++|+..+ .........+++.. .++|+++++||+|+....+.. ...+.+......
T Consensus 96 ~i~~YL~~R~~L~~vvlliD~r~~--~~~~D~em~~~l~~---~~i~~~vv~tK~DKi~~~~~~k~l~~v~~~l~~~~~~ 170 (200)
T COG0218 96 LIEEYLEKRANLKGVVLLIDARHP--PKDLDREMIEFLLE---LGIPVIVVLTKADKLKKSERNKQLNKVAEELKKPPPD 170 (200)
T ss_pred HHHHHHhhchhheEEEEEEECCCC--CcHHHHHHHHHHHH---cCCCeEEEEEccccCChhHHHHHHHHHHHHhcCCCCc
Confidence 34445543 5789999998443 44444444555444 589999999999998865543 333334332222
Q ss_pred CCceeEEEeeecCCCChHHHHHHHHHHhhhc
Q 030429 146 DREVCCYMISCKDSINIDAVIDWLIKHSKTA 176 (177)
Q Consensus 146 ~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~ 176 (177)
... ++..|+..+.|++++.+.|.+.+...
T Consensus 171 ~~~--~~~~ss~~k~Gi~~l~~~i~~~~~~~ 199 (200)
T COG0218 171 DQW--VVLFSSLKKKGIDELKAKILEWLKEA 199 (200)
T ss_pred cce--EEEEecccccCHHHHHHHHHHHhhcc
Confidence 221 77889999999999999999887654
|
|
| >cd04169 RF3 RF3 subfamily | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.6e-19 Score=128.50 Aligned_cols=112 Identities=25% Similarity=0.297 Sum_probs=80.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCC--CCC---------------C-------CCCccceeEEEEEeCCEEEEEEecCCch
Q 030429 13 MELSLIGLQNAGKTSLVNTIATGG--YSE---------------D-------MIPTVGFNMRKVTKGNVTIKLWDLGGQR 68 (177)
Q Consensus 13 ~~i~i~G~~~~GKSsli~~l~~~~--~~~---------------~-------~~~t~~~~~~~~~~~~~~~~~~D~~g~~ 68 (177)
-+|+++|++|+|||||+++++... ..+ + ...+.......++.++..+++|||||+.
T Consensus 3 Rni~ivGh~~~GKTTL~e~ll~~~g~i~~~g~v~~~~~~~~t~~D~~~~e~~rg~si~~~~~~~~~~~~~i~liDTPG~~ 82 (267)
T cd04169 3 RTFAIISHPDAGKTTLTEKLLLFGGAIREAGAVKARKSRKHATSDWMEIEKQRGISVTSSVMQFEYRDCVINLLDTPGHE 82 (267)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhcCCcccCceecccccCCCccCCCcHHHHhCCCCeEEEEEEEeeCCEEEEEEECCCch
Confidence 479999999999999999997321 000 0 1112223444577889999999999999
Q ss_pred hhHHhHHHHhcCCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccc
Q 030429 69 RFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEA 129 (177)
Q Consensus 69 ~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~ 129 (177)
+|.......++.+|++++|+|+++.... ....++... .. .++|+++++||+|+...
T Consensus 83 df~~~~~~~l~~aD~~IlVvda~~g~~~-~~~~i~~~~-~~---~~~P~iivvNK~D~~~a 138 (267)
T cd04169 83 DFSEDTYRTLTAVDSAVMVIDAAKGVEP-QTRKLFEVC-RL---RGIPIITFINKLDREGR 138 (267)
T ss_pred HHHHHHHHHHHHCCEEEEEEECCCCccH-HHHHHHHHH-Hh---cCCCEEEEEECCccCCC
Confidence 9888777788999999999999875432 223333322 22 46899999999998653
|
Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts. |
| >cd04104 p47_IIGP_like p47 (47-kDa) family | Back alignment and domain information |
|---|
Probab=99.84 E-value=3.7e-20 Score=127.76 Aligned_cols=158 Identities=14% Similarity=0.212 Sum_probs=96.0
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccce---e--EEEEE-eCCEEEEEEecCCchhhHHhHH-----HHhcC
Q 030429 12 EMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGF---N--MRKVT-KGNVTIKLWDLGGQRRFRTMWE-----RYCRG 80 (177)
Q Consensus 12 ~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~---~--~~~~~-~~~~~~~~~D~~g~~~~~~~~~-----~~~~~ 80 (177)
+++|+++|.+|+|||||+|++.+.........+.+. + ...+. .....+.+||+||......... ..+.+
T Consensus 1 ~~kI~i~G~~g~GKSSLin~L~g~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~l~~~~~~~ 80 (197)
T cd04104 1 PLNIAVTGESGAGKSSFINALRGVGHEEEGAAPTGVVETTMKRTPYPHPKFPNVTLWDLPGIGSTAFPPDDYLEEMKFSE 80 (197)
T ss_pred CeEEEEECCCCCCHHHHHHHHhccCCCCCCccccCccccccCceeeecCCCCCceEEeCCCCCcccCCHHHHHHHhCccC
Confidence 478999999999999999999975443222222121 0 01111 1124689999999653322122 22567
Q ss_pred CCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccC---------HHHHHHHhCcccc------c
Q 030429 81 VSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALS---------KQALVDQLGLESI------T 145 (177)
Q Consensus 81 ~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~---------~~~~~~~~~~~~~------~ 145 (177)
+|+++++.+. .+......+...+.. .+.|+++|+||+|+..... .++..+.+..... .
T Consensus 81 ~d~~l~v~~~----~~~~~d~~~~~~l~~---~~~~~ilV~nK~D~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~~ 153 (197)
T cd04104 81 YDFFIIISST----RFSSNDVKLAKAIQC---MGKKFYFVRTKVDRDLSNEQRSKPRSFNREQVLQEIRDNCLENLQEAG 153 (197)
T ss_pred cCEEEEEeCC----CCCHHHHHHHHHHHH---hCCCEEEEEecccchhhhhhccccccccHHHHHHHHHHHHHHHHHHcC
Confidence 8998887442 344444444444443 2579999999999853211 2222222221111 1
Q ss_pred CCceeEEEeeec--CCCChHHHHHHHHHHhhhc
Q 030429 146 DREVCCYMISCK--DSINIDAVIDWLIKHSKTA 176 (177)
Q Consensus 146 ~~~~~~~~~Sa~--~~~~i~~l~~~l~~~~~~~ 176 (177)
....++|.+|+. .+.++..+.+.+...+.++
T Consensus 154 ~~~p~v~~vS~~~~~~~~~~~l~~~~~~~l~~~ 186 (197)
T cd04104 154 VSEPPVFLVSNFDPSDYDFPKLRETLLKDLPAH 186 (197)
T ss_pred CCCCCEEEEeCCChhhcChHHHHHHHHHHhhHH
Confidence 223478899998 5799999999999988754
|
The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei |
| >TIGR00485 EF-Tu translation elongation factor TU | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.2e-19 Score=137.16 Aligned_cols=167 Identities=18% Similarity=0.127 Sum_probs=106.0
Q ss_pred CceeecccccceeEEEEEcCCCCCHHHHHHHHhcC------C-C-----------CCCCCCccceeEEEEEeCCEEEEEE
Q 030429 1 MYLHISLFFKQEMELSLIGLQNAGKTSLVNTIATG------G-Y-----------SEDMIPTVGFNMRKVTKGNVTIKLW 62 (177)
Q Consensus 1 m~~~~~~~~~~~~~i~i~G~~~~GKSsli~~l~~~------~-~-----------~~~~~~t~~~~~~~~~~~~~~~~~~ 62 (177)
|....--..++.++|+++|..++|||||+++|++. . . ......|.......+..++..+.+|
T Consensus 1 ~~~~~~~~~~~~~~i~i~Ghvd~GKStL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rG~Ti~~~~~~~~~~~~~~~li 80 (394)
T TIGR00485 1 MAKEKFERTKPHVNIGTIGHVDHGKTTLTAAITTVLAKEGGAAARAYDQIDNAPEEKARGITINTAHVEYETENRHYAHV 80 (394)
T ss_pred CchhhhcCCCceEEEEEEeecCCCHHHHHHHHHhhHHHhhcccccccccccCCHHHHhcCcceeeEEEEEcCCCEEEEEE
Confidence 34334445677899999999999999999999732 0 0 0112234444444455667889999
Q ss_pred ecCCchhhHHhHHHHhcCCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEE-EEeeCCCcccccCH-H----HHH
Q 030429 63 DLGGQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLL-VLGNKIDKSEALSK-Q----ALV 136 (177)
Q Consensus 63 D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i-iv~nK~D~~~~~~~-~----~~~ 136 (177)
||||+++|.......+..+|++++|+|+++... ......+..+.. .++|.+ +++||+|+.+.++. + ++.
T Consensus 81 DtpGh~~f~~~~~~~~~~~D~~ilVvda~~g~~-~qt~e~l~~~~~----~gi~~iIvvvNK~Dl~~~~~~~~~~~~~i~ 155 (394)
T TIGR00485 81 DCPGHADYVKNMITGAAQMDGAILVVSATDGPM-PQTREHILLARQ----VGVPYIVVFLNKCDMVDDEELLELVEMEVR 155 (394)
T ss_pred ECCchHHHHHHHHHHHhhCCEEEEEEECCCCCc-HHHHHHHHHHHH----cCCCEEEEEEEecccCCHHHHHHHHHHHHH
Confidence 999999998766667788999999999976422 222233333322 256655 68999999754321 1 222
Q ss_pred HHhCcccccCCceeEEEeeecCCC--------ChHHHHHHHHHH
Q 030429 137 DQLGLESITDREVCCYMISCKDSI--------NIDAVIDWLIKH 172 (177)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~Sa~~~~--------~i~~l~~~l~~~ 172 (177)
+.+....+....++++++||.+|. ++.++++.|.+.
T Consensus 156 ~~l~~~~~~~~~~~ii~vSa~~g~~g~~~~~~~~~~ll~~l~~~ 199 (394)
T TIGR00485 156 ELLSEYDFPGDDTPIIRGSALKALEGDAEWEAKILELMDAVDEY 199 (394)
T ss_pred HHHHhcCCCccCccEEECccccccccCCchhHhHHHHHHHHHhc
Confidence 233222222234789999999874 345566655543
|
This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation. |
| >CHL00071 tufA elongation factor Tu | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.2e-19 Score=137.70 Aligned_cols=168 Identities=17% Similarity=0.121 Sum_probs=109.6
Q ss_pred CceeecccccceeEEEEEcCCCCCHHHHHHHHhcCCCC------------------CCCCCccceeEEEEEeCCEEEEEE
Q 030429 1 MYLHISLFFKQEMELSLIGLQNAGKTSLVNTIATGGYS------------------EDMIPTVGFNMRKVTKGNVTIKLW 62 (177)
Q Consensus 1 m~~~~~~~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~------------------~~~~~t~~~~~~~~~~~~~~~~~~ 62 (177)
|.++..-..+..++|+++|.+++|||||+++|++.... .....|.......+..++.++.++
T Consensus 1 ~~~~~~~~~~~~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~~i 80 (409)
T CHL00071 1 MAREKFERKKPHVNIGTIGHVDHGKTTLTAAITMTLAAKGGAKAKKYDEIDSAPEEKARGITINTAHVEYETENRHYAHV 80 (409)
T ss_pred CchhhccCCCCeEEEEEECCCCCCHHHHHHHHHHHhCccccccccccccccCChhhhcCCEeEEccEEEEccCCeEEEEE
Confidence 44444455677899999999999999999999853110 001112223333355567889999
Q ss_pred ecCCchhhHHhHHHHhcCCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCc-EEEEeeCCCcccccCH-H----HHH
Q 030429 63 DLGGQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIP-LLVLGNKIDKSEALSK-Q----ALV 136 (177)
Q Consensus 63 D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-~iiv~nK~D~~~~~~~-~----~~~ 136 (177)
||||+.+|.......+..+|++++|+|+..... ......+..+ .. .++| +++++||+|+.+..+. + ++.
T Consensus 81 DtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~~-~qt~~~~~~~-~~---~g~~~iIvvvNK~D~~~~~~~~~~~~~~l~ 155 (409)
T CHL00071 81 DCPGHADYVKNMITGAAQMDGAILVVSAADGPM-PQTKEHILLA-KQ---VGVPNIVVFLNKEDQVDDEELLELVELEVR 155 (409)
T ss_pred ECCChHHHHHHHHHHHHhCCEEEEEEECCCCCc-HHHHHHHHHH-HH---cCCCEEEEEEEccCCCCHHHHHHHHHHHHH
Confidence 999999888777777889999999999975422 2223333333 22 2577 7788999999764322 2 223
Q ss_pred HHhCcccccCCceeEEEeeecCCCC------------------hHHHHHHHHHHh
Q 030429 137 DQLGLESITDREVCCYMISCKDSIN------------------IDAVIDWLIKHS 173 (177)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~Sa~~~~~------------------i~~l~~~l~~~~ 173 (177)
+.+....+.....+++++||.+|.+ +..+++.|...+
T Consensus 156 ~~l~~~~~~~~~~~ii~~Sa~~g~n~~~~~~~~~~~~~~w~~~~~~ll~~l~~~~ 210 (409)
T CHL00071 156 ELLSKYDFPGDDIPIVSGSALLALEALTENPKIKRGENKWVDKIYNLMDAVDSYI 210 (409)
T ss_pred HHHHHhCCCCCcceEEEcchhhcccccccCccccccCCchhhhHHHHHHHHHhhC
Confidence 3332222222347899999998863 466777766543
|
|
| >PRK04004 translation initiation factor IF-2; Validated | Back alignment and domain information |
|---|
Probab=99.84 E-value=3.5e-19 Score=139.80 Aligned_cols=158 Identities=19% Similarity=0.224 Sum_probs=101.1
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCC----CccceeEEEEEe------CC-----E-----EEEEEecCCchh
Q 030429 10 KQEMELSLIGLQNAGKTSLVNTIATGGYSEDMI----PTVGFNMRKVTK------GN-----V-----TIKLWDLGGQRR 69 (177)
Q Consensus 10 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~----~t~~~~~~~~~~------~~-----~-----~~~~~D~~g~~~ 69 (177)
.++..|+++|++++|||||++++.+........ ++.+........ .. . .+.+|||||++.
T Consensus 4 ~R~p~V~i~Gh~~~GKTSLl~~l~~~~v~~~~~g~itq~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iDTPG~e~ 83 (586)
T PRK04004 4 LRQPIVVVLGHVDHGKTTLLDKIRGTAVAAKEAGGITQHIGATEVPIDVIEKIAGPLKKPLPIKLKIPGLLFIDTPGHEA 83 (586)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCcccccCCCCceEEeeceeeccccccccccceeccccccccccCCEEEEECCChHH
Confidence 355679999999999999999997554322221 223322221110 00 1 268999999999
Q ss_pred hHHhHHHHhcCCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccCH--------------H--
Q 030429 70 FRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSK--------------Q-- 133 (177)
Q Consensus 70 ~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~--------------~-- 133 (177)
|...+...+..+|++++|+|+++..... ....+..+ .. .++|+++++||+|+...... .
T Consensus 84 f~~~~~~~~~~aD~~IlVvDa~~g~~~q-t~e~i~~~-~~---~~vpiIvviNK~D~~~~~~~~~~~~~~e~~~~~~~~v 158 (586)
T PRK04004 84 FTNLRKRGGALADIAILVVDINEGFQPQ-TIEAINIL-KR---RKTPFVVAANKIDRIPGWKSTEDAPFLESIEKQSQRV 158 (586)
T ss_pred HHHHHHHhHhhCCEEEEEEECCCCCCHh-HHHHHHHH-HH---cCCCEEEEEECcCCchhhhhhcCchHHHHHhhhhHHH
Confidence 9988888888999999999998732111 11112222 22 36899999999998532110 0
Q ss_pred ---------HHHHHhCcccc----------cCCceeEEEeeecCCCChHHHHHHHHHH
Q 030429 134 ---------ALVDQLGLESI----------TDREVCCYMISCKDSINIDAVIDWLIKH 172 (177)
Q Consensus 134 ---------~~~~~~~~~~~----------~~~~~~~~~~Sa~~~~~i~~l~~~l~~~ 172 (177)
++...+....+ .....+++++||.+|.|++++++.+...
T Consensus 159 ~~~f~~~l~ev~~~L~~~g~~~e~~~~~~~~~~~v~ivpiSA~tGeGi~dLl~~i~~~ 216 (586)
T PRK04004 159 QQELEEKLYELIGQLSELGFSADRFDRVKDFTKTVAIVPVSAKTGEGIPDLLMVLAGL 216 (586)
T ss_pred HHHHHHHHHHHHHHHHhcCCChhhhhhhhccCCCceEeeccCCCCCChHHHHHHHHHH
Confidence 01112221111 1235789999999999999999988653
|
|
| >KOG0077 consensus Vesicle coat complex COPII, GTPase subunit SAR1 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.83 E-value=3.7e-20 Score=119.41 Aligned_cols=164 Identities=33% Similarity=0.533 Sum_probs=136.6
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEeCCEEEEEEecCCchhhHHhHHHHhcCCCEEEEEE
Q 030429 9 FKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVV 88 (177)
Q Consensus 9 ~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~ 88 (177)
.++.-|++++|--++|||||++-+.+++ -....||...+..+...++..|+-+|.+|+...+..|..++..+|++++.+
T Consensus 17 ~kK~gKllFlGLDNAGKTTLLHMLKdDr-l~qhvPTlHPTSE~l~Ig~m~ftt~DLGGH~qArr~wkdyf~~v~~iv~lv 95 (193)
T KOG0077|consen 17 YKKFGKLLFLGLDNAGKTTLLHMLKDDR-LGQHVPTLHPTSEELSIGGMTFTTFDLGGHLQARRVWKDYFPQVDAIVYLV 95 (193)
T ss_pred hccCceEEEEeecCCchhhHHHHHcccc-ccccCCCcCCChHHheecCceEEEEccccHHHHHHHHHHHHhhhceeEeee
Confidence 3566799999999999999999997444 445667888888888999999999999999999999999999999999999
Q ss_pred eCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccCHHHHHHHhCcc------------cccCCceeEEEeee
Q 030429 89 DAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLE------------SITDREVCCYMISC 156 (177)
Q Consensus 89 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~Sa 156 (177)
|+-|.+.+.+.+..+..++........|+++.+||+|.+.....++....++.. ....+...+|.||.
T Consensus 96 da~d~er~~es~~eld~ll~~e~la~vp~lilgnKId~p~a~se~~l~~~l~l~~~t~~~~~v~~~~~~~rp~evfmcsi 175 (193)
T KOG0077|consen 96 DAYDQERFAESKKELDALLSDESLATVPFLILGNKIDIPYAASEDELRFHLGLSNFTTGKGKVNLTDSNVRPLEVFMCSI 175 (193)
T ss_pred ehhhHHHhHHHHHHHHHHHhHHHHhcCcceeecccccCCCcccHHHHHHHHHHHHHhcccccccccCCCCCeEEEEEEEE
Confidence 999999999999999988887766789999999999998876555554444321 12235677889999
Q ss_pred cCCCChHHHHHHHHHHh
Q 030429 157 KDSINIDAVIDWLIKHS 173 (177)
Q Consensus 157 ~~~~~i~~l~~~l~~~~ 173 (177)
..+.+-.+.|.|+.+++
T Consensus 176 ~~~~gy~e~fkwl~qyi 192 (193)
T KOG0077|consen 176 VRKMGYGEGFKWLSQYI 192 (193)
T ss_pred EccCccceeeeehhhhc
Confidence 99999888888887654
|
|
| >PRK00049 elongation factor Tu; Reviewed | Back alignment and domain information |
|---|
Probab=99.83 E-value=3.6e-19 Score=134.50 Aligned_cols=168 Identities=17% Similarity=0.109 Sum_probs=111.7
Q ss_pred CceeecccccceeEEEEEcCCCCCHHHHHHHHhcCCCC------------------CCCCCccceeEEEEEeCCEEEEEE
Q 030429 1 MYLHISLFFKQEMELSLIGLQNAGKTSLVNTIATGGYS------------------EDMIPTVGFNMRKVTKGNVTIKLW 62 (177)
Q Consensus 1 m~~~~~~~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~------------------~~~~~t~~~~~~~~~~~~~~~~~~ 62 (177)
|.+......+..++|+++|..++|||||+++|++.... .....|.......+..++.++.++
T Consensus 1 ~~~~~~~~~~~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~i 80 (396)
T PRK00049 1 MAKEKFERTKPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGAEAKAYDQIDKAPEEKARGITINTAHVEYETEKRHYAHV 80 (396)
T ss_pred CchhhccCCCCEEEEEEEeECCCCHHHHHHHHHHhhhhccCCcccchhhccCChHHHhcCeEEeeeEEEEcCCCeEEEEE
Confidence 44455555678899999999999999999999852110 012223333333455567889999
Q ss_pred ecCCchhhHHhHHHHhcCCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEE-EEeeCCCcccccC-HH----HHH
Q 030429 63 DLGGQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLL-VLGNKIDKSEALS-KQ----ALV 136 (177)
Q Consensus 63 D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i-iv~nK~D~~~~~~-~~----~~~ 136 (177)
||||+.+|.......+..+|++++|+|+..... ......+..+ .. .++|.+ +++||+|+.+..+ .+ ++.
T Consensus 81 DtPG~~~f~~~~~~~~~~aD~~llVVDa~~g~~-~qt~~~~~~~-~~---~g~p~iiVvvNK~D~~~~~~~~~~~~~~i~ 155 (396)
T PRK00049 81 DCPGHADYVKNMITGAAQMDGAILVVSAADGPM-PQTREHILLA-RQ---VGVPYIVVFLNKCDMVDDEELLELVEMEVR 155 (396)
T ss_pred ECCCHHHHHHHHHhhhccCCEEEEEEECCCCCc-hHHHHHHHHH-HH---cCCCEEEEEEeecCCcchHHHHHHHHHHHH
Confidence 999999888777777899999999999976422 2223333333 22 257876 5799999975322 11 222
Q ss_pred HHhCcccccCCceeEEEeeecCCC----------ChHHHHHHHHHHh
Q 030429 137 DQLGLESITDREVCCYMISCKDSI----------NIDAVIDWLIKHS 173 (177)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~Sa~~~~----------~i~~l~~~l~~~~ 173 (177)
+.+....+.....+++++||.++. ++..+++.|.+.+
T Consensus 156 ~~l~~~~~~~~~~~iv~iSa~~g~~~~~~~~w~~~~~~ll~~l~~~~ 202 (396)
T PRK00049 156 ELLSKYDFPGDDTPIIRGSALKALEGDDDEEWEKKILELMDAVDSYI 202 (396)
T ss_pred HHHHhcCCCccCCcEEEeecccccCCCCcccccccHHHHHHHHHhcC
Confidence 333222222345789999999875 5778888888754
|
|
| >cd04167 Snu114p Snu114p subfamily | Back alignment and domain information |
|---|
Probab=99.83 E-value=2e-19 Score=125.66 Aligned_cols=155 Identities=15% Similarity=0.196 Sum_probs=98.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCC---------------------CCCccceeEEEEE-----eCCEEEEEEecCCc
Q 030429 14 ELSLIGLQNAGKTSLVNTIATGGYSED---------------------MIPTVGFNMRKVT-----KGNVTIKLWDLGGQ 67 (177)
Q Consensus 14 ~i~i~G~~~~GKSsli~~l~~~~~~~~---------------------~~~t~~~~~~~~~-----~~~~~~~~~D~~g~ 67 (177)
+|+++|+.|+|||||+++|+....... ...+.......+. ...+.+++|||||+
T Consensus 2 nv~iiG~~~~GKTtL~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~giti~~~~~~~~~~~~~~~~~~i~iiDtpG~ 81 (213)
T cd04167 2 NVAIAGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPDSKGKSYLFNIIDTPGH 81 (213)
T ss_pred cEEEEcCCCCCHHHHHHHHHHhcCCCcccccccCCceeECCCCHHHHHcCccccccceeEEEEcCCCCEEEEEEEECCCC
Confidence 689999999999999999985432211 0011111111121 23488999999999
Q ss_pred hhhHHhHHHHhcCCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccc-------ccCH---HHHHH
Q 030429 68 RRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSE-------ALSK---QALVD 137 (177)
Q Consensus 68 ~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~-------~~~~---~~~~~ 137 (177)
.+|......++..+|++++|+|+++..+... ..++..... .+.|+++|+||+|+.. .+.. .+..+
T Consensus 82 ~~f~~~~~~~~~~aD~~llVvD~~~~~~~~~-~~~~~~~~~----~~~p~iiviNK~D~~~~~~~l~~~~~~~~l~~~i~ 156 (213)
T cd04167 82 VNFMDEVAAALRLSDGVVLVVDVVEGVTSNT-ERLIRHAIL----EGLPIVLVINKIDRLILELKLPPNDAYFKLRHIID 156 (213)
T ss_pred cchHHHHHHHHHhCCEEEEEEECCCCCCHHH-HHHHHHHHH----cCCCEEEEEECcccCcccccCCHHHHHHHHHHHHH
Confidence 9998888888999999999999987765533 333333322 2589999999999752 1111 11222
Q ss_pred HhCc----ccc------cCCceeEEEeeecCCCChH--------HHHHHHHHHh
Q 030429 138 QLGL----ESI------TDREVCCYMISCKDSINID--------AVIDWLIKHS 173 (177)
Q Consensus 138 ~~~~----~~~------~~~~~~~~~~Sa~~~~~i~--------~l~~~l~~~~ 173 (177)
.+.. ... .-.+..+++.|++.+.++. +|++.|.+.+
T Consensus 157 ~~n~~~~~~~~~~~~~~~p~~~nv~~~s~~~~w~~~~~~~~~~~~~~~~~~~~~ 210 (213)
T cd04167 157 EVNNIIASFSTTLSFLFSPENGNVCFASSKFGFCFTLESFAKKYGLVDSIVSNI 210 (213)
T ss_pred HHHHHHHHhcCCCceEeccCCCeEEEEecCCCeEEecHHHHhhhhHHHHHHhhC
Confidence 2211 101 0012347789999988776 6777666544
|
Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs. |
| >cd04170 EF-G_bact Elongation factor G (EF-G) subfamily | Back alignment and domain information |
|---|
Probab=99.82 E-value=2.2e-18 Score=124.32 Aligned_cols=111 Identities=23% Similarity=0.241 Sum_probs=80.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCC--C------------------CCCCccceeEEEEEeCCEEEEEEecCCchhhHHh
Q 030429 14 ELSLIGLQNAGKTSLVNTIATGGYS--E------------------DMIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTM 73 (177)
Q Consensus 14 ~i~i~G~~~~GKSsli~~l~~~~~~--~------------------~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~ 73 (177)
+|+++|.+|+|||||+++++..... + ....+.......+..+++.+++|||||+.++...
T Consensus 1 ni~ivG~~gsGKStL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~~f~~~ 80 (268)
T cd04170 1 NIALVGHSGSGKTTLAEALLYATGAIDRLGSVEDGTTVSDYDPEEIKRKMSISTSVAPLEWKGHKINLIDTPGYADFVGE 80 (268)
T ss_pred CEEEECCCCCCHHHHHHHHHHhcCCCccCCeecCCcccCCCCHHHHhhcccccceeEEEEECCEEEEEEECcCHHHHHHH
Confidence 5899999999999999999742110 0 0112333344456678899999999999988888
Q ss_pred HHHHhcCCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccc
Q 030429 74 WERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEA 129 (177)
Q Consensus 74 ~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~ 129 (177)
+..++..+|++++|+|+++....... ..+..+.. .++|.++++||+|....
T Consensus 81 ~~~~l~~aD~~i~Vvd~~~g~~~~~~-~~~~~~~~----~~~p~iivvNK~D~~~~ 131 (268)
T cd04170 81 TRAALRAADAALVVVSAQSGVEVGTE-KLWEFADE----AGIPRIIFINKMDRERA 131 (268)
T ss_pred HHHHHHHCCEEEEEEeCCCCCCHHHH-HHHHHHHH----cCCCEEEEEECCccCCC
Confidence 88889999999999999876544332 22222222 36899999999998653
|
Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group |
| >cd01886 EF-G Elongation factor G (EF-G) subfamily | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.1e-18 Score=125.41 Aligned_cols=111 Identities=20% Similarity=0.182 Sum_probs=81.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC--C------------------CCCCCCccceeEEEEEeCCEEEEEEecCCchhhHHh
Q 030429 14 ELSLIGLQNAGKTSLVNTIATGG--Y------------------SEDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTM 73 (177)
Q Consensus 14 ~i~i~G~~~~GKSsli~~l~~~~--~------------------~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~ 73 (177)
+|+++|++|+|||||+++++... . ......|.......+..++.++.+|||||+.++...
T Consensus 1 nv~ivGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~df~~~ 80 (270)
T cd01886 1 NIGIIAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERGITIQSAATTCFWKDHRINIIDTPGHVDFTIE 80 (270)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCCcccccccCCccccCCCccccCCCcCeeccEEEEEECCEEEEEEECCCcHHHHHH
Confidence 58999999999999999997311 0 011222444445556778999999999999999888
Q ss_pred HHHHhcCCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccc
Q 030429 74 WERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEA 129 (177)
Q Consensus 74 ~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~ 129 (177)
+..+++.+|++++|+|+.+...-. ....+..... .++|+++++||+|+.+.
T Consensus 81 ~~~~l~~aD~ailVVDa~~g~~~~-t~~~~~~~~~----~~~p~ivviNK~D~~~a 131 (270)
T cd01886 81 VERSLRVLDGAVAVFDAVAGVEPQ-TETVWRQADR----YNVPRIAFVNKMDRTGA 131 (270)
T ss_pred HHHHHHHcCEEEEEEECCCCCCHH-HHHHHHHHHH----cCCCEEEEEECCCCCCC
Confidence 888999999999999997754322 2233333322 36899999999998753
|
Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta |
| >KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.82 E-value=2.7e-19 Score=126.95 Aligned_cols=161 Identities=24% Similarity=0.306 Sum_probs=115.1
Q ss_pred ecccccceeEEEEEcCCCCCHHHHHHHHhcCCCC--CCCCCccceeEEEEEeCC-EEEEEEecCCchhhHHhH-------
Q 030429 5 ISLFFKQEMELSLIGLQNAGKTSLVNTIATGGYS--EDMIPTVGFNMRKVTKGN-VTIKLWDLGGQRRFRTMW------- 74 (177)
Q Consensus 5 ~~~~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~--~~~~~t~~~~~~~~~~~~-~~~~~~D~~g~~~~~~~~------- 74 (177)
+.++.+.-..|.++|.|++|||||++++...... .....|.......+.+++ .++.+-|+||.-+...+.
T Consensus 189 ~~lELKsiadvGLVG~PNAGKSTLL~als~AKpkVa~YaFTTL~P~iG~v~yddf~q~tVADiPGiI~GAh~nkGlG~~F 268 (366)
T KOG1489|consen 189 IELELKSIADVGLVGFPNAGKSTLLNALSRAKPKVAHYAFTTLRPHIGTVNYDDFSQITVADIPGIIEGAHMNKGLGYKF 268 (366)
T ss_pred EEEEeeeecccceecCCCCcHHHHHHHhhccCCcccccceeeeccccceeeccccceeEeccCccccccccccCcccHHH
Confidence 4456667788999999999999999999865532 223334445555555554 349999999954332222
Q ss_pred HHHhcCCCEEEEEEeCCCC---CCHHHHHHHHHHHHcC-CCCCCCcEEEEeeCCCcccccCH--HHHHHHhCcccccCCc
Q 030429 75 ERYCRGVSAILYVVDAADR---DSVPIARSELHELLMK-PSLSGIPLLVLGNKIDKSEALSK--QALVDQLGLESITDRE 148 (177)
Q Consensus 75 ~~~~~~~d~~i~v~d~~~~---~~~~~~~~~~~~~~~~-~~~~~~~~iiv~nK~D~~~~~~~--~~~~~~~~~~~~~~~~ 148 (177)
-.+++.|+.+++|+|++.+ ..++.+...+.++-.+ ....+.|.++|+||+|+.+.+.. .++.+.++..
T Consensus 269 LrHiER~~~l~fVvD~s~~~~~~p~~~~~lL~~ELe~yek~L~~rp~liVaNKiD~~eae~~~l~~L~~~lq~~------ 342 (366)
T KOG1489|consen 269 LRHIERCKGLLFVVDLSGKQLRNPWQQLQLLIEELELYEKGLADRPALIVANKIDLPEAEKNLLSSLAKRLQNP------ 342 (366)
T ss_pred HHHHHhhceEEEEEECCCcccCCHHHHHHHHHHHHHHHhhhhccCceEEEEeccCchhHHHHHHHHHHHHcCCC------
Confidence 2346779999999999998 7788877777776554 23356899999999999654322 3444444332
Q ss_pred eeEEEeeecCCCChHHHHHHHHHH
Q 030429 149 VCCYMISCKDSINIDAVIDWLIKH 172 (177)
Q Consensus 149 ~~~~~~Sa~~~~~i~~l~~~l~~~ 172 (177)
.++++||+.++|+.++++.|.+.
T Consensus 343 -~V~pvsA~~~egl~~ll~~lr~~ 365 (366)
T KOG1489|consen 343 -HVVPVSAKSGEGLEELLNGLREL 365 (366)
T ss_pred -cEEEeeeccccchHHHHHHHhhc
Confidence 48999999999999999987653
|
|
| >PLN03126 Elongation factor Tu; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.5e-18 Score=133.21 Aligned_cols=147 Identities=16% Similarity=0.147 Sum_probs=98.8
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHhcCC------C------------CCCCCCccceeEEEEEeCCEEEEEEecCCchhh
Q 030429 9 FKQEMELSLIGLQNAGKTSLVNTIATGG------Y------------SEDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRF 70 (177)
Q Consensus 9 ~~~~~~i~i~G~~~~GKSsli~~l~~~~------~------------~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~ 70 (177)
.+..++|+++|++++|||||+++|+... . .....-|.......+..++..+.++|+||+.+|
T Consensus 78 ~k~~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~~~~i~liDtPGh~~f 157 (478)
T PLN03126 78 KKPHVNIGTIGHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHADY 157 (478)
T ss_pred cCCeeEEEEECCCCCCHHHHHHHHHHhhhhhccccccccccccCChhHHhCCeeEEEEEEEEecCCcEEEEEECCCHHHH
Confidence 3567999999999999999999998421 1 111112333333345567889999999999999
Q ss_pred HHhHHHHhcCCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCc-EEEEeeCCCcccccCH-H----HHHHHhCcccc
Q 030429 71 RTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIP-LLVLGNKIDKSEALSK-Q----ALVDQLGLESI 144 (177)
Q Consensus 71 ~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-~iiv~nK~D~~~~~~~-~----~~~~~~~~~~~ 144 (177)
.......+..+|++++|+|+.+... .....++...... ++| +++++||+|+.+.++. + ++.+.+....+
T Consensus 158 ~~~~~~g~~~aD~ailVVda~~G~~-~qt~e~~~~~~~~----gi~~iIvvvNK~Dl~~~~~~~~~i~~~i~~~l~~~g~ 232 (478)
T PLN03126 158 VKNMITGAAQMDGAILVVSGADGPM-PQTKEHILLAKQV----GVPNMVVFLNKQDQVDDEELLELVELEVRELLSSYEF 232 (478)
T ss_pred HHHHHHHHhhCCEEEEEEECCCCCc-HHHHHHHHHHHHc----CCCeEEEEEecccccCHHHHHHHHHHHHHHHHHhcCC
Confidence 8877777889999999999976532 2223344333222 567 7788999999764321 2 22233322223
Q ss_pred cCCceeEEEeeecCCC
Q 030429 145 TDREVCCYMISCKDSI 160 (177)
Q Consensus 145 ~~~~~~~~~~Sa~~~~ 160 (177)
.....+++++|+.++.
T Consensus 233 ~~~~~~~vp~Sa~~g~ 248 (478)
T PLN03126 233 PGDDIPIISGSALLAL 248 (478)
T ss_pred CcCcceEEEEEccccc
Confidence 3346789999998874
|
|
| >PTZ00141 elongation factor 1- alpha; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=5.2e-19 Score=135.14 Aligned_cols=152 Identities=17% Similarity=0.159 Sum_probs=102.9
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHhcC--CCC-------------------------------CCCCCccceeEEEEEeC
Q 030429 9 FKQEMELSLIGLQNAGKTSLVNTIATG--GYS-------------------------------EDMIPTVGFNMRKVTKG 55 (177)
Q Consensus 9 ~~~~~~i~i~G~~~~GKSsli~~l~~~--~~~-------------------------------~~~~~t~~~~~~~~~~~ 55 (177)
.+..++|+++|+.++|||||+.+|+.. ... .....|.......+..+
T Consensus 4 ~k~~~nv~i~Ghvd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~s~~~a~~~D~~~~Er~rGiTid~~~~~~~~~ 83 (446)
T PTZ00141 4 EKTHINLVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETP 83 (446)
T ss_pred CCceEEEEEEecCCCCHHHHHHHHHHHcCCcChHHHHHHhhHHHhhCCcchhhhhhhcCChHHHhcCEeEEeeeEEEccC
Confidence 356789999999999999999999741 111 11122444445556678
Q ss_pred CEEEEEEecCCchhhHHhHHHHhcCCCEEEEEEeCCCCCC---H---HHHHHHHHHHHcCCCCCCCc-EEEEeeCCCccc
Q 030429 56 NVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAADRDS---V---PIARSELHELLMKPSLSGIP-LLVLGNKIDKSE 128 (177)
Q Consensus 56 ~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~~---~---~~~~~~~~~~~~~~~~~~~~-~iiv~nK~D~~~ 128 (177)
+..++++|+||+.+|.......+..+|++++|+|++.... + ......+..... .++| +++++||+|...
T Consensus 84 ~~~i~lIDtPGh~~f~~~~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~~~~~----~gi~~iiv~vNKmD~~~ 159 (446)
T PTZ00141 84 KYYFTIIDAPGHRDFIKNMITGTSQADVAILVVASTAGEFEAGISKDGQTREHALLAFT----LGVKQMIVCINKMDDKT 159 (446)
T ss_pred CeEEEEEECCChHHHHHHHHHhhhhcCEEEEEEEcCCCceecccCCCccHHHHHHHHHH----cCCCeEEEEEEcccccc
Confidence 8999999999999998888888899999999999976431 1 222333333322 2555 678999999532
Q ss_pred ----ccCHH----HHHHHhCcccccCCceeEEEeeecCCCChHH
Q 030429 129 ----ALSKQ----ALVDQLGLESITDREVCCYMISCKDSINIDA 164 (177)
Q Consensus 129 ----~~~~~----~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 164 (177)
....+ ++.+.+....+....++++++|+.+|.|+.+
T Consensus 160 ~~~~~~~~~~i~~~i~~~l~~~g~~~~~~~~ipiSa~~g~ni~~ 203 (446)
T PTZ00141 160 VNYSQERYDEIKKEVSAYLKKVGYNPEKVPFIPISGWQGDNMIE 203 (446)
T ss_pred chhhHHHHHHHHHHHHHHHHhcCCCcccceEEEeecccCCCccc
Confidence 12222 3333333333333457999999999999864
|
|
| >PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=6e-19 Score=135.71 Aligned_cols=153 Identities=13% Similarity=0.090 Sum_probs=98.6
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHhcCCC--CC---------------------------------CCCCccceeEEEEE
Q 030429 9 FKQEMELSLIGLQNAGKTSLVNTIATGGY--SE---------------------------------DMIPTVGFNMRKVT 53 (177)
Q Consensus 9 ~~~~~~i~i~G~~~~GKSsli~~l~~~~~--~~---------------------------------~~~~t~~~~~~~~~ 53 (177)
.+..++|+++|++++|||||+++|+...- .. ...-|+......+.
T Consensus 24 ~~~~~~i~iiGhvdaGKSTL~~~LL~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr~rgiTid~~~~~~~ 103 (474)
T PRK05124 24 HKSLLRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFS 103 (474)
T ss_pred ccCceEEEEECCCCCChHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhccCChHHhhcCCCeEeeEEEec
Confidence 46779999999999999999999983211 10 01112334444455
Q ss_pred eCCEEEEEEecCCchhhHHhHHHHhcCCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccC--
Q 030429 54 KGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALS-- 131 (177)
Q Consensus 54 ~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~-- 131 (177)
.++.++.+|||||+.+|.......+..+|++++|+|++..-.-.. ...+... ... ...|+++++||+|+.+...
T Consensus 104 ~~~~~i~~iDTPGh~~f~~~~~~~l~~aD~allVVDa~~G~~~qt-~~~~~l~-~~l--g~~~iIvvvNKiD~~~~~~~~ 179 (474)
T PRK05124 104 TEKRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLDQT-RRHSFIA-TLL--GIKHLVVAVNKMDLVDYSEEV 179 (474)
T ss_pred cCCcEEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccccc-hHHHHHH-HHh--CCCceEEEEEeeccccchhHH
Confidence 677899999999999887666666899999999999976422111 1111111 111 1247899999999974321
Q ss_pred HHHHHHHhCcc--ccc-CCceeEEEeeecCCCChHHH
Q 030429 132 KQALVDQLGLE--SIT-DREVCCYMISCKDSINIDAV 165 (177)
Q Consensus 132 ~~~~~~~~~~~--~~~-~~~~~~~~~Sa~~~~~i~~l 165 (177)
..+..+.+... ... ....+++++||++|.|++++
T Consensus 180 ~~~i~~~l~~~~~~~~~~~~~~iipvSA~~g~ni~~~ 216 (474)
T PRK05124 180 FERIREDYLTFAEQLPGNLDIRFVPLSALEGDNVVSQ 216 (474)
T ss_pred HHHHHHHHHHHHHhcCCCCCceEEEEEeecCCCcccc
Confidence 22233322110 011 23568999999999999764
|
|
| >PLN00043 elongation factor 1-alpha; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.4e-18 Score=132.78 Aligned_cols=150 Identities=14% Similarity=0.145 Sum_probs=102.1
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcCC--C-------------------------------CCCCCCccceeEEEEEeCC
Q 030429 10 KQEMELSLIGLQNAGKTSLVNTIATGG--Y-------------------------------SEDMIPTVGFNMRKVTKGN 56 (177)
Q Consensus 10 ~~~~~i~i~G~~~~GKSsli~~l~~~~--~-------------------------------~~~~~~t~~~~~~~~~~~~ 56 (177)
+..++|+++|+.++|||||+.+|+... . .+...-|+......++.++
T Consensus 5 k~~~ni~i~Ghvd~GKSTL~g~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~a~~~D~~~~Er~rGiTi~~~~~~~~~~~ 84 (447)
T PLN00043 5 KVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTK 84 (447)
T ss_pred CceEEEEEEecCCCCHHHHHHHHHHHhCCCcHHHHHHHhhhhhhhcccchhhhhhhcCCHhHHhcCceEEEEEEEecCCC
Confidence 567999999999999999999997311 0 0111224444455566778
Q ss_pred EEEEEEecCCchhhHHhHHHHhcCCCEEEEEEeCCCCCCH-------HHHHHHHHHHHcCCCCCCC-cEEEEeeCCCccc
Q 030429 57 VTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAADRDSV-------PIARSELHELLMKPSLSGI-PLLVLGNKIDKSE 128 (177)
Q Consensus 57 ~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~-------~~~~~~~~~~~~~~~~~~~-~~iiv~nK~D~~~ 128 (177)
..++++|+||+.+|.......+..+|++++|+|+++. .+ ......+..... .++ ++++++||+|+.+
T Consensus 85 ~~i~liDtPGh~df~~~~~~g~~~aD~aIlVVda~~G-~~e~g~~~~~qT~eh~~~~~~----~gi~~iIV~vNKmD~~~ 159 (447)
T PLN00043 85 YYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTG-GFEAGISKDGQTREHALLAFT----LGVKQMICCCNKMDATT 159 (447)
T ss_pred EEEEEEECCCHHHHHHHHHhhhhhccEEEEEEEcccC-ceecccCCCchHHHHHHHHHH----cCCCcEEEEEEcccCCc
Confidence 8999999999999999888889999999999999763 22 233333332222 255 5788899999862
Q ss_pred c----cCH----HHHHHHhCcccccCCceeEEEeeecCCCChHH
Q 030429 129 A----LSK----QALVDQLGLESITDREVCCYMISCKDSINIDA 164 (177)
Q Consensus 129 ~----~~~----~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 164 (177)
. ... +++.+.+....+....++++++||.+|.|+.+
T Consensus 160 ~~~~~~~~~~i~~ei~~~l~~~g~~~~~~~~ipiSa~~G~ni~~ 203 (447)
T PLN00043 160 PKYSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIE 203 (447)
T ss_pred hhhhHHHHHHHHHHHHHHHHHcCCCcccceEEEEeccccccccc
Confidence 1 112 23333333223333457899999999999853
|
|
| >PRK00741 prfC peptide chain release factor 3; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=3.7e-18 Score=132.54 Aligned_cols=116 Identities=23% Similarity=0.279 Sum_probs=83.4
Q ss_pred cccceeEEEEEcCCCCCHHHHHHHHhc--CCC------C---------CC-------CCCccceeEEEEEeCCEEEEEEe
Q 030429 8 FFKQEMELSLIGLQNAGKTSLVNTIAT--GGY------S---------ED-------MIPTVGFNMRKVTKGNVTIKLWD 63 (177)
Q Consensus 8 ~~~~~~~i~i~G~~~~GKSsli~~l~~--~~~------~---------~~-------~~~t~~~~~~~~~~~~~~~~~~D 63 (177)
+..+..+|+++|++++|||||+++|+. +.. . .+ ...+.......+..+++.+++||
T Consensus 6 ~~~~~Rni~IiGh~daGKTTL~e~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rgiSi~~~~~~~~~~~~~inliD 85 (526)
T PRK00741 6 EVAKRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGISVTSSVMQFPYRDCLINLLD 85 (526)
T ss_pred hhhcCCEEEEECCCCCCHHHHHHHHHHhCCCccccceeeccccCccccCCCcHHHHhhCCceeeeeEEEEECCEEEEEEE
Confidence 445667999999999999999999972 110 0 00 01122233345677889999999
Q ss_pred cCCchhhHHhHHHHhcCCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccc
Q 030429 64 LGGQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSE 128 (177)
Q Consensus 64 ~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~ 128 (177)
|||+.+|......++..+|++++|+|+++.... ....++... . ..++|+++++||+|+..
T Consensus 86 TPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~-~t~~l~~~~-~---~~~iPiiv~iNK~D~~~ 145 (526)
T PRK00741 86 TPGHEDFSEDTYRTLTAVDSALMVIDAAKGVEP-QTRKLMEVC-R---LRDTPIFTFINKLDRDG 145 (526)
T ss_pred CCCchhhHHHHHHHHHHCCEEEEEEecCCCCCH-HHHHHHHHH-H---hcCCCEEEEEECCcccc
Confidence 999999988778889999999999999875322 223333332 2 24789999999999865
|
|
| >COG1084 Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.81 E-value=4.8e-18 Score=121.35 Aligned_cols=157 Identities=20% Similarity=0.209 Sum_probs=114.5
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcCCCC--CCCCCccceeEEEEEeCCEEEEEEecCCch--hhHH----hHH---HHh
Q 030429 10 KQEMELSLIGLQNAGKTSLVNTIATGGYS--EDMIPTVGFNMRKVTKGNVTIKLWDLGGQR--RFRT----MWE---RYC 78 (177)
Q Consensus 10 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~--~~~~----~~~---~~~ 78 (177)
+....|++.|.||||||||++.+.+.... +....|.++....+..+..+++++||||.. .... ..+ +.-
T Consensus 166 p~~pTivVaG~PNVGKSSlv~~lT~AkpEvA~YPFTTK~i~vGhfe~~~~R~QvIDTPGlLDRPl~ErN~IE~qAi~AL~ 245 (346)
T COG1084 166 PDLPTIVVAGYPNVGKSSLVRKLTTAKPEVAPYPFTTKGIHVGHFERGYLRIQVIDTPGLLDRPLEERNEIERQAILALR 245 (346)
T ss_pred CCCCeEEEecCCCCcHHHHHHHHhcCCCccCCCCccccceeEeeeecCCceEEEecCCcccCCChHHhcHHHHHHHHHHH
Confidence 45678999999999999999999977654 444458889999999999999999999932 1111 111 122
Q ss_pred cCCCEEEEEEeCCCCC--CHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccCHHHHHHHhCcccccCCceeEEEeee
Q 030429 79 RGVSAILYVVDAADRD--SVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISC 156 (177)
Q Consensus 79 ~~~d~~i~v~d~~~~~--~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 156 (177)
+-.+++++++|.|..+ +.+.....+.++.... ..|+++|.||+|..+.+..++....+...... ....+++
T Consensus 246 hl~~~IlF~~D~Se~cgy~lE~Q~~L~~eIk~~f---~~p~v~V~nK~D~~~~e~~~~~~~~~~~~~~~----~~~~~~~ 318 (346)
T COG1084 246 HLAGVILFLFDPSETCGYSLEEQISLLEEIKELF---KAPIVVVINKIDIADEEKLEEIEASVLEEGGE----EPLKISA 318 (346)
T ss_pred HhcCeEEEEEcCccccCCCHHHHHHHHHHHHHhc---CCCeEEEEecccccchhHHHHHHHHHHhhccc----cccceee
Confidence 3368999999998654 5667777788876653 38999999999998776665555544332221 2567888
Q ss_pred cCCCChHHHHHHHHHHh
Q 030429 157 KDSINIDAVIDWLIKHS 173 (177)
Q Consensus 157 ~~~~~i~~l~~~l~~~~ 173 (177)
..+.+++.+-+.+...+
T Consensus 319 ~~~~~~d~~~~~v~~~a 335 (346)
T COG1084 319 TKGCGLDKLREEVRKTA 335 (346)
T ss_pred eehhhHHHHHHHHHHHh
Confidence 88888888887776653
|
|
| >TIGR02034 CysN sulfate adenylyltransferase, large subunit | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.2e-18 Score=132.18 Aligned_cols=148 Identities=14% Similarity=0.091 Sum_probs=95.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCC--CCC---------------------------------CCCCccceeEEEEEeCCE
Q 030429 13 MELSLIGLQNAGKTSLVNTIATGG--YSE---------------------------------DMIPTVGFNMRKVTKGNV 57 (177)
Q Consensus 13 ~~i~i~G~~~~GKSsli~~l~~~~--~~~---------------------------------~~~~t~~~~~~~~~~~~~ 57 (177)
++|+++|+.++|||||+++|+... ... ...-|.......+..++.
T Consensus 1 ~~~~~vGhvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid~~~~~~~~~~~ 80 (406)
T TIGR02034 1 LRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITIDVAYRYFSTDKR 80 (406)
T ss_pred CeEEEECCCCCCchhhhHHHHHHcCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeEeeeEEEccCCe
Confidence 589999999999999999997321 100 011133444444566788
Q ss_pred EEEEEecCCchhhHHhHHHHhcCCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccC--HHHH
Q 030429 58 TIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALS--KQAL 135 (177)
Q Consensus 58 ~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~--~~~~ 135 (177)
++.++||||+.+|.......+..+|++++|+|++....-.. ...+... ... ...++++++||+|+.+... .++.
T Consensus 81 ~~~liDtPGh~~f~~~~~~~~~~aD~allVVda~~G~~~qt-~~~~~~~-~~~--~~~~iivviNK~D~~~~~~~~~~~i 156 (406)
T TIGR02034 81 KFIVADTPGHEQYTRNMATGASTADLAVLLVDARKGVLEQT-RRHSYIA-SLL--GIRHVVLAVNKMDLVDYDEEVFENI 156 (406)
T ss_pred EEEEEeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCCcccc-HHHHHHH-HHc--CCCcEEEEEEecccccchHHHHHHH
Confidence 99999999999997767777889999999999976532211 1122222 221 1346889999999975321 1222
Q ss_pred HHHhCc--ccccCCceeEEEeeecCCCChHH
Q 030429 136 VDQLGL--ESITDREVCCYMISCKDSINIDA 164 (177)
Q Consensus 136 ~~~~~~--~~~~~~~~~~~~~Sa~~~~~i~~ 164 (177)
.+.+.. ........+++++||++|.|+++
T Consensus 157 ~~~~~~~~~~~~~~~~~iipiSA~~g~ni~~ 187 (406)
T TIGR02034 157 KKDYLAFAEQLGFRDVTFIPLSALKGDNVVS 187 (406)
T ss_pred HHHHHHHHHHcCCCCccEEEeecccCCCCcc
Confidence 222211 01112345799999999999986
|
Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase). |
| >COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.80 E-value=4.1e-18 Score=131.95 Aligned_cols=148 Identities=22% Similarity=0.247 Sum_probs=110.1
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCCCC--CCCccceeEEEEEeCCEEEEEEecCCchh------hHHhHHHHh--cCC
Q 030429 12 EMELSLIGLQNAGKTSLVNTIATGGYSED--MIPTVGFNMRKVTKGNVTIKLWDLGGQRR------FRTMWERYC--RGV 81 (177)
Q Consensus 12 ~~~i~i~G~~~~GKSsli~~l~~~~~~~~--~~~t~~~~~~~~~~~~~~~~~~D~~g~~~------~~~~~~~~~--~~~ 81 (177)
..+|+++|+||||||||.|++++.+.... .+-|.+-....+..++.++++.|+||.-. -....+.++ .+.
T Consensus 3 ~~~valvGNPNvGKTtlFN~LTG~~q~VgNwpGvTVEkkeg~~~~~~~~i~ivDLPG~YSL~~~S~DE~Var~~ll~~~~ 82 (653)
T COG0370 3 KLTVALVGNPNVGKTTLFNALTGANQKVGNWPGVTVEKKEGKLKYKGHEIEIVDLPGTYSLTAYSEDEKVARDFLLEGKP 82 (653)
T ss_pred cceEEEecCCCccHHHHHHHHhccCceecCCCCeeEEEEEEEEEecCceEEEEeCCCcCCCCCCCchHHHHHHHHhcCCC
Confidence 45799999999999999999997664433 33355556666778888999999999321 122233333 357
Q ss_pred CEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccc----CHHHHHHHhCcccccCCceeEEEeeec
Q 030429 82 SAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEAL----SKQALVDQLGLESITDREVCCYMISCK 157 (177)
Q Consensus 82 d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 157 (177)
|+++-|+|+++ .+.......++.+. +.|++++.|++|..+.. +.+++.+.++- |++++||+
T Consensus 83 D~ivnVvDAtn---LeRnLyltlQLlE~----g~p~ilaLNm~D~A~~~Gi~ID~~~L~~~LGv--------PVv~tvA~ 147 (653)
T COG0370 83 DLIVNVVDATN---LERNLYLTLQLLEL----GIPMILALNMIDEAKKRGIRIDIEKLSKLLGV--------PVVPTVAK 147 (653)
T ss_pred CEEEEEcccch---HHHHHHHHHHHHHc----CCCeEEEeccHhhHHhcCCcccHHHHHHHhCC--------CEEEEEee
Confidence 99999999988 44444455555554 78999999999987643 34566666664 89999999
Q ss_pred CCCChHHHHHHHHHHhh
Q 030429 158 DSINIDAVIDWLIKHSK 174 (177)
Q Consensus 158 ~~~~i~~l~~~l~~~~~ 174 (177)
+|.|++++++.+.+...
T Consensus 148 ~g~G~~~l~~~i~~~~~ 164 (653)
T COG0370 148 RGEGLEELKRAIIELAE 164 (653)
T ss_pred cCCCHHHHHHHHHHhcc
Confidence 99999999999987544
|
|
| >KOG0096 consensus GTPase Ran/TC4/GSP1 (nuclear protein transport pathway), small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.6e-19 Score=118.98 Aligned_cols=158 Identities=22% Similarity=0.374 Sum_probs=131.3
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEE----eCCEEEEEEecCCchhhHHhHHHHhcCCCEEEE
Q 030429 11 QEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVT----KGNVTIKLWDLGGQRRFRTMWERYCRGVSAILY 86 (177)
Q Consensus 11 ~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~----~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~ 86 (177)
..++++++|..|.||||+.++.+.+.+...+.+|.+....... .+.++|..|||.|++.+-.....++-+..++++
T Consensus 9 ~~fklvlvGdgg~gKtt~vkr~ltgeFe~~y~at~Gv~~~pl~f~tn~g~irf~~wdtagqEk~gglrdgyyI~~qcAii 88 (216)
T KOG0096|consen 9 LTFKLVLVGDGGTGKTTFVKRHLTGEFEKTYPATLGVEVHPLLFDTNRGQIRFNVWDTAGQEKKGGLRDGYYIQGQCAII 88 (216)
T ss_pred ceEEEEEecCCcccccchhhhhhcccceecccCcceeEEeeeeeecccCcEEEEeeecccceeecccccccEEecceeEE
Confidence 3689999999999999999999999999999999997776643 234899999999999998877788888999999
Q ss_pred EEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccCHHHHHHHhCcccccCCceeEEEeeecCCCChHHHH
Q 030429 87 VVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCKDSINIDAVI 166 (177)
Q Consensus 87 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~ 166 (177)
++|++.+-.+.+...|..++..... ++|+++++||.|........+.. .....++..++++|++.+.|.+.-|
T Consensus 89 mFdVtsr~t~~n~~rwhrd~~rv~~--NiPiv~cGNKvDi~~r~~k~k~v-----~~~rkknl~y~~iSaksn~NfekPF 161 (216)
T KOG0096|consen 89 MFDVTSRFTYKNVPRWHRDLVRVRE--NIPIVLCGNKVDIKARKVKAKPV-----SFHRKKNLQYYEISAKSNYNFERPF 161 (216)
T ss_pred EeeeeehhhhhcchHHHHHHHHHhc--CCCeeeeccceeccccccccccc-----eeeecccceeEEeecccccccccch
Confidence 9999999999999999999877654 69999999999987654221111 2222345679999999999999999
Q ss_pred HHHHHHhhh
Q 030429 167 DWLIKHSKT 175 (177)
Q Consensus 167 ~~l~~~~~~ 175 (177)
-++.+.+..
T Consensus 162 l~LarKl~G 170 (216)
T KOG0096|consen 162 LWLARKLTG 170 (216)
T ss_pred HHHhhhhcC
Confidence 999988753
|
|
| >COG2262 HflX GTPases [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.80 E-value=7.8e-18 Score=123.57 Aligned_cols=155 Identities=24% Similarity=0.313 Sum_probs=112.8
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhcCCC--CCCCCCccceeEEEEEeC-CEEEEEEecCC---------chhhHHhHHHHh
Q 030429 11 QEMELSLIGLQNAGKTSLVNTIATGGY--SEDMIPTVGFNMRKVTKG-NVTIKLWDLGG---------QRRFRTMWERYC 78 (177)
Q Consensus 11 ~~~~i~i~G~~~~GKSsli~~l~~~~~--~~~~~~t~~~~~~~~~~~-~~~~~~~D~~g---------~~~~~~~~~~~~ 78 (177)
.-..|.++|-+++|||||+|++++... ......|...++..+... +..+.+-||.| .+.|++...+ .
T Consensus 191 ~~p~vaLvGYTNAGKSTL~N~LT~~~~~~~d~LFATLdpttR~~~l~~g~~vlLtDTVGFI~~LP~~LV~AFksTLEE-~ 269 (411)
T COG2262 191 GIPLVALVGYTNAGKSTLFNALTGADVYVADQLFATLDPTTRRIELGDGRKVLLTDTVGFIRDLPHPLVEAFKSTLEE-V 269 (411)
T ss_pred CCCeEEEEeeccccHHHHHHHHhccCeeccccccccccCceeEEEeCCCceEEEecCccCcccCChHHHHHHHHHHHH-h
Confidence 446899999999999999999996554 334456777778877765 57788889999 2345554444 5
Q ss_pred cCCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccCHHHHHHHhCcccccCCceeEEEeeecC
Q 030429 79 RGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCKD 158 (177)
Q Consensus 79 ~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 158 (177)
..+|+++.|+|+++|.....+......+ .......+|+++|+||+|+..+... ...+.... . ..+++||++
T Consensus 270 ~~aDlllhVVDaSdp~~~~~~~~v~~vL-~el~~~~~p~i~v~NKiD~~~~~~~---~~~~~~~~----~-~~v~iSA~~ 340 (411)
T COG2262 270 KEADLLLHVVDASDPEILEKLEAVEDVL-AEIGADEIPIILVLNKIDLLEDEEI---LAELERGS----P-NPVFISAKT 340 (411)
T ss_pred hcCCEEEEEeecCChhHHHHHHHHHHHH-HHcCCCCCCEEEEEecccccCchhh---hhhhhhcC----C-CeEEEEecc
Confidence 6799999999999996555554444433 4444456999999999998776441 11111111 1 488999999
Q ss_pred CCChHHHHHHHHHHhhh
Q 030429 159 SINIDAVIDWLIKHSKT 175 (177)
Q Consensus 159 ~~~i~~l~~~l~~~~~~ 175 (177)
|.|+++|.+.|.+.+..
T Consensus 341 ~~gl~~L~~~i~~~l~~ 357 (411)
T COG2262 341 GEGLDLLRERIIELLSG 357 (411)
T ss_pred CcCHHHHHHHHHHHhhh
Confidence 99999999999988763
|
|
| >PRK13351 elongation factor G; Reviewed | Back alignment and domain information |
|---|
Probab=99.80 E-value=5.7e-18 Score=136.18 Aligned_cols=116 Identities=24% Similarity=0.206 Sum_probs=88.1
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHhcCC-------------CCC-------CCCCccceeEEEEEeCCEEEEEEecCCch
Q 030429 9 FKQEMELSLIGLQNAGKTSLVNTIATGG-------------YSE-------DMIPTVGFNMRKVTKGNVTIKLWDLGGQR 68 (177)
Q Consensus 9 ~~~~~~i~i~G~~~~GKSsli~~l~~~~-------------~~~-------~~~~t~~~~~~~~~~~~~~~~~~D~~g~~ 68 (177)
..+..||+++|+.|+|||||+++|+... +.. ....|.......+..++..+++|||||+.
T Consensus 5 ~~~irni~iiG~~~~GKTtL~~~ll~~~g~~~~~~~v~~~~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~ 84 (687)
T PRK13351 5 LMQIRNIGILAHIDAGKTTLTERILFYTGKIHKMGEVEDGTTVTDWMPQEQERGITIESAATSCDWDNHRINLIDTPGHI 84 (687)
T ss_pred cccccEEEEECCCCCcchhHHHHHHHhcCCccccccccCCcccCCCCHHHHhcCCCcccceEEEEECCEEEEEEECCCcH
Confidence 3456799999999999999999998421 000 12335555555677789999999999999
Q ss_pred hhHHhHHHHhcCCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccc
Q 030429 69 RFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEA 129 (177)
Q Consensus 69 ~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~ 129 (177)
+|...+..+++.+|++++|+|+++........ .+..+.. .++|+++|+||+|+...
T Consensus 85 df~~~~~~~l~~aD~~ilVvd~~~~~~~~~~~-~~~~~~~----~~~p~iiviNK~D~~~~ 140 (687)
T PRK13351 85 DFTGEVERSLRVLDGAVVVFDAVTGVQPQTET-VWRQADR----YGIPRLIFINKMDRVGA 140 (687)
T ss_pred HHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHH-HHHHHHh----cCCCEEEEEECCCCCCC
Confidence 99888888999999999999998876655433 3333322 36899999999998753
|
|
| >COG1163 DRG Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.80 E-value=2.1e-18 Score=122.82 Aligned_cols=155 Identities=21% Similarity=0.211 Sum_probs=109.9
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcCCCCCC--CCCccceeEEEEEeCCEEEEEEecCCchhhH-------HhHHHHhcC
Q 030429 10 KQEMELSLIGLQNAGKTSLVNTIATGGYSED--MIPTVGFNMRKVTKGNVTIKLWDLGGQRRFR-------TMWERYCRG 80 (177)
Q Consensus 10 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~--~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~-------~~~~~~~~~ 80 (177)
.-...++++|.|++|||||++.+.+...... ...|....-..+++++.++++.|+||.-... .......+.
T Consensus 61 sGda~v~lVGfPsvGKStLL~~LTnt~seva~y~FTTl~~VPG~l~Y~ga~IQild~Pgii~gas~g~grG~~vlsv~R~ 140 (365)
T COG1163 61 SGDATVALVGFPSVGKSTLLNKLTNTKSEVADYPFTTLEPVPGMLEYKGAQIQLLDLPGIIEGASSGRGRGRQVLSVARN 140 (365)
T ss_pred cCCeEEEEEcCCCccHHHHHHHHhCCCccccccCceecccccceEeecCceEEEEcCcccccCcccCCCCcceeeeeecc
Confidence 3458999999999999999999997654333 3345555556688999999999999832221 222345788
Q ss_pred CCEEEEEEeCCCCCC-HHHHHHHHHHHHcC--------------------------------------------------
Q 030429 81 VSAILYVVDAADRDS-VPIARSELHELLMK-------------------------------------------------- 109 (177)
Q Consensus 81 ~d~~i~v~d~~~~~~-~~~~~~~~~~~~~~-------------------------------------------------- 109 (177)
||++++|+|+..... .+.+...+...--.
T Consensus 141 ADlIiiVld~~~~~~~~~~i~~ELe~~GIrlnk~~p~V~I~kk~~gGI~i~~t~~l~~~d~~~ir~iL~Ey~I~nA~V~I 220 (365)
T COG1163 141 ADLIIIVLDVFEDPHHRDIIERELEDVGIRLNKRPPDVTIKKKESGGIRINGTGPLTHLDEDTVRAILREYRIHNADVLI 220 (365)
T ss_pred CCEEEEEEecCCChhHHHHHHHHHHhcCeEecCCCCceEEEEeccCCEEEecccccccCCHHHHHHHHHHhCcccceEEE
Confidence 999999999975443 33333333321000
Q ss_pred --------------CCCCCCcEEEEeeCCCcccccCHHHHHHHhCcccccCCceeEEEeeecCCCChHHHHHHHHHHhh
Q 030429 110 --------------PSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCKDSINIDAVIDWLIKHSK 174 (177)
Q Consensus 110 --------------~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~ 174 (177)
.+...+|+++|.||+|+...+....+.+.. .++++||+.+.|+++|.+.|.+.+.
T Consensus 221 r~dvTlDd~id~l~~nrvY~p~l~v~NKiD~~~~e~~~~l~~~~----------~~v~isa~~~~nld~L~e~i~~~L~ 289 (365)
T COG1163 221 REDVTLDDLIDALEGNRVYKPALYVVNKIDLPGLEELERLARKP----------NSVPISAKKGINLDELKERIWDVLG 289 (365)
T ss_pred ecCCcHHHHHHHHhhcceeeeeEEEEecccccCHHHHHHHHhcc----------ceEEEecccCCCHHHHHHHHHHhhC
Confidence 000357999999999998865554444444 4899999999999999999999864
|
|
| >KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.80 E-value=2.1e-19 Score=136.13 Aligned_cols=163 Identities=18% Similarity=0.200 Sum_probs=123.9
Q ss_pred cccceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEE--EEeCCEEEEEEecCCchhhHHhHHHHhcCCCEEE
Q 030429 8 FFKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRK--VTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAIL 85 (177)
Q Consensus 8 ~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~--~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i 85 (177)
..++.+||+++|+.|||||||+-+++...+.....+..+..... +....+..+++|++...+.+......++.+|+++
T Consensus 5 ~t~kdVRIvliGD~G~GKtSLImSL~~eef~~~VP~rl~~i~IPadvtPe~vpt~ivD~ss~~~~~~~l~~EirkA~vi~ 84 (625)
T KOG1707|consen 5 ETLKDVRIVLIGDEGVGKTSLIMSLLEEEFVDAVPRRLPRILIPADVTPENVPTSIVDTSSDSDDRLCLRKEIRKADVIC 84 (625)
T ss_pred cCccceEEEEECCCCccHHHHHHHHHhhhccccccccCCccccCCccCcCcCceEEEecccccchhHHHHHHHhhcCEEE
Confidence 45678999999999999999999999888877766655433333 4566777999999988777777778899999999
Q ss_pred EEEeCCCCCCHHHHHHHHHHHHcCCC--CCCCcEEEEeeCCCcccccCH--HH-HHHHhCcccccCCceeEEEeeecCCC
Q 030429 86 YVVDAADRDSVPIARSELHELLMKPS--LSGIPLLVLGNKIDKSEALSK--QA-LVDQLGLESITDREVCCYMISCKDSI 160 (177)
Q Consensus 86 ~v~d~~~~~~~~~~~~~~~~~~~~~~--~~~~~~iiv~nK~D~~~~~~~--~~-~~~~~~~~~~~~~~~~~~~~Sa~~~~ 160 (177)
++|+.+++++++.+...|..++.+.. ..++|+|+|+||+|..+.... +. ....+... ..--.+++|||++-.
T Consensus 85 lvyavd~~~T~D~ist~WLPlir~~~~~~~~~PVILvGNK~d~~~~~~~s~e~~~~pim~~f---~EiEtciecSA~~~~ 161 (625)
T KOG1707|consen 85 LVYAVDDESTVDRISTKWLPLIRQLFGDYHETPVILVGNKSDNGDNENNSDEVNTLPIMIAF---AEIETCIECSALTLA 161 (625)
T ss_pred EEEecCChHHhhhhhhhhhhhhhcccCCCccCCEEEEeeccCCccccccchhHHHHHHHHHh---HHHHHHHhhhhhhhh
Confidence 99999999999999888887766633 246899999999998765432 21 11111110 011157899999999
Q ss_pred ChHHHHHHHHHHh
Q 030429 161 NIDAVIDWLIKHS 173 (177)
Q Consensus 161 ~i~~l~~~l~~~~ 173 (177)
++.++|-...+.+
T Consensus 162 n~~e~fYyaqKaV 174 (625)
T KOG1707|consen 162 NVSELFYYAQKAV 174 (625)
T ss_pred hhHhhhhhhhhee
Confidence 9999998776654
|
|
| >PLN03127 Elongation factor Tu; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=5.3e-18 Score=129.49 Aligned_cols=161 Identities=18% Similarity=0.159 Sum_probs=105.5
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHhcC------CC------------CCCCCCccceeEEEEEeCCEEEEEEecCCchhh
Q 030429 9 FKQEMELSLIGLQNAGKTSLVNTIATG------GY------------SEDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRF 70 (177)
Q Consensus 9 ~~~~~~i~i~G~~~~GKSsli~~l~~~------~~------------~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~ 70 (177)
.+..++|+++|..++|||||+++|.+. .. .....-|.......++.++.++.++||||+.+|
T Consensus 58 ~k~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~~iDtPGh~~f 137 (447)
T PLN03127 58 TKPHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAPEEKARGITIATAHVEYETAKRHYAHVDCPGHADY 137 (447)
T ss_pred CCceEEEEEECcCCCCHHHHHHHHHhHHHHhhcccceeeccccCChhHhhcCceeeeeEEEEcCCCeEEEEEECCCccch
Confidence 467799999999999999999999621 10 111223444445556667789999999999998
Q ss_pred HHhHHHHhcCCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCc-EEEEeeCCCcccccCH-HHH----HHHhCcccc
Q 030429 71 RTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIP-LLVLGNKIDKSEALSK-QAL----VDQLGLESI 144 (177)
Q Consensus 71 ~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-~iiv~nK~D~~~~~~~-~~~----~~~~~~~~~ 144 (177)
.......+..+|++++|+|+++... ......+..+ .. .++| +++++||+|+.+.... +.+ .+.+....+
T Consensus 138 ~~~~~~g~~~aD~allVVda~~g~~-~qt~e~l~~~-~~---~gip~iIvviNKiDlv~~~~~~~~i~~~i~~~l~~~~~ 212 (447)
T PLN03127 138 VKNMITGAAQMDGGILVVSAPDGPM-PQTKEHILLA-RQ---VGVPSLVVFLNKVDVVDDEELLELVEMELRELLSFYKF 212 (447)
T ss_pred HHHHHHHHhhCCEEEEEEECCCCCc-hhHHHHHHHH-HH---cCCCeEEEEEEeeccCCHHHHHHHHHHHHHHHHHHhCC
Confidence 7777777778999999999876432 2223333333 22 3578 5778999999753222 112 222221122
Q ss_pred cCCceeEEEeeec---CCCC-------hHHHHHHHHHHhh
Q 030429 145 TDREVCCYMISCK---DSIN-------IDAVIDWLIKHSK 174 (177)
Q Consensus 145 ~~~~~~~~~~Sa~---~~~~-------i~~l~~~l~~~~~ 174 (177)
....++++++|+. +|.| +.+|++.|.+.+.
T Consensus 213 ~~~~vpiip~Sa~sa~~g~n~~~~~~~i~~Ll~~l~~~lp 252 (447)
T PLN03127 213 PGDEIPIIRGSALSALQGTNDEIGKNAILKLMDAVDEYIP 252 (447)
T ss_pred CCCcceEEEeccceeecCCCcccccchHHHHHHHHHHhCC
Confidence 2235688888875 4544 7888888887653
|
|
| >PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=2.6e-18 Score=136.83 Aligned_cols=153 Identities=14% Similarity=0.070 Sum_probs=97.9
Q ss_pred cccceeEEEEEcCCCCCHHHHHHHHhcCCC--CC---------------------------------CCCCccceeEEEE
Q 030429 8 FFKQEMELSLIGLQNAGKTSLVNTIATGGY--SE---------------------------------DMIPTVGFNMRKV 52 (177)
Q Consensus 8 ~~~~~~~i~i~G~~~~GKSsli~~l~~~~~--~~---------------------------------~~~~t~~~~~~~~ 52 (177)
..+..++|+++|++++|||||+++|+...- .. ...-|.......+
T Consensus 20 ~~~~~~~i~iiGh~~~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~Tid~~~~~~ 99 (632)
T PRK05506 20 ERKSLLRFITCGSVDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGITIDVAYRYF 99 (632)
T ss_pred cCCCeeEEEEECCCCCChHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCcCceeeeeEE
Confidence 346679999999999999999999984221 10 0111233334445
Q ss_pred EeCCEEEEEEecCCchhhHHhHHHHhcCCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccc--
Q 030429 53 TKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEAL-- 130 (177)
Q Consensus 53 ~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~-- 130 (177)
..++.++.++||||+++|.......+..+|++++|+|++....-. ....+..+ ... ...++++++||+|+.+..
T Consensus 100 ~~~~~~~~liDtPG~~~f~~~~~~~~~~aD~~llVvda~~g~~~~-t~e~~~~~-~~~--~~~~iivvvNK~D~~~~~~~ 175 (632)
T PRK05506 100 ATPKRKFIVADTPGHEQYTRNMVTGASTADLAIILVDARKGVLTQ-TRRHSFIA-SLL--GIRHVVLAVNKMDLVDYDQE 175 (632)
T ss_pred ccCCceEEEEECCChHHHHHHHHHHHHhCCEEEEEEECCCCcccc-CHHHHHHH-HHh--CCCeEEEEEEecccccchhH
Confidence 567788999999999988766666788999999999997643211 11111111 111 235788999999997521
Q ss_pred CHHHHHHHhCc--ccccCCceeEEEeeecCCCChHH
Q 030429 131 SKQALVDQLGL--ESITDREVCCYMISCKDSINIDA 164 (177)
Q Consensus 131 ~~~~~~~~~~~--~~~~~~~~~~~~~Sa~~~~~i~~ 164 (177)
..++....+.. ........+++++||++|.|+++
T Consensus 176 ~~~~i~~~i~~~~~~~~~~~~~iipiSA~~g~ni~~ 211 (632)
T PRK05506 176 VFDEIVADYRAFAAKLGLHDVTFIPISALKGDNVVT 211 (632)
T ss_pred HHHHHHHHHHHHHHHcCCCCccEEEEecccCCCccc
Confidence 12222222211 01112345799999999999874
|
|
| >KOG3883 consensus Ras family small GTPase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.79 E-value=3.6e-18 Score=108.95 Aligned_cols=161 Identities=17% Similarity=0.262 Sum_probs=116.3
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcCCC--CCCCCCccceeE-EEEEe---CCEEEEEEecCCchhh-HHhHHHHhcCCC
Q 030429 10 KQEMELSLIGLQNAGKTSLVNTIATGGY--SEDMIPTVGFNM-RKVTK---GNVTIKLWDLGGQRRF-RTMWERYCRGVS 82 (177)
Q Consensus 10 ~~~~~i~i~G~~~~GKSsli~~l~~~~~--~~~~~~t~~~~~-~~~~~---~~~~~~~~D~~g~~~~-~~~~~~~~~~~d 82 (177)
-+.-||+++|..++|||+++++++-++. .....+|++-.+ ..++. ..-.+.++||.|-..+ ..+-+.++.-+|
T Consensus 7 Gk~~kVvVcG~k~VGKTaileQl~yg~~~~~~e~~pTiEDiY~~svet~rgarE~l~lyDTaGlq~~~~eLprhy~q~aD 86 (198)
T KOG3883|consen 7 GKVCKVVVCGMKSVGKTAILEQLLYGNHVPGTELHPTIEDIYVASVETDRGAREQLRLYDTAGLQGGQQELPRHYFQFAD 86 (198)
T ss_pred CcceEEEEECCccccHHHHHHHHHhccCCCCCccccchhhheeEeeecCCChhheEEEeecccccCchhhhhHhHhccCc
Confidence 3567999999999999999999985443 333445555222 22332 2246889999998777 455567888999
Q ss_pred EEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccCHH-HHHHHhCcccccCCceeEEEeeecCCCC
Q 030429 83 AILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQ-ALVDQLGLESITDREVCCYMISCKDSIN 161 (177)
Q Consensus 83 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 161 (177)
++++||+..|++||......-..+-.......+|+++.+||+|..++.+.+ +..+.+ .....+..+++++.+...
T Consensus 87 afVLVYs~~d~eSf~rv~llKk~Idk~KdKKEvpiVVLaN~rdr~~p~~vd~d~A~~W----a~rEkvkl~eVta~dR~s 162 (198)
T KOG3883|consen 87 AFVLVYSPMDPESFQRVELLKKEIDKHKDKKEVPIVVLANKRDRAEPREVDMDVAQIW----AKREKVKLWEVTAMDRPS 162 (198)
T ss_pred eEEEEecCCCHHHHHHHHHHHHHHhhccccccccEEEEechhhcccchhcCHHHHHHH----HhhhheeEEEEEeccchh
Confidence 999999999999998876555555444444568999999999997654332 222222 223345789999999999
Q ss_pred hHHHHHHHHHHhh
Q 030429 162 IDAVIDWLIKHSK 174 (177)
Q Consensus 162 i~~l~~~l~~~~~ 174 (177)
+-|.|..+...+.
T Consensus 163 L~epf~~l~~rl~ 175 (198)
T KOG3883|consen 163 LYEPFTYLASRLH 175 (198)
T ss_pred hhhHHHHHHHhcc
Confidence 9999999988765
|
|
| >COG3596 Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.4e-18 Score=121.45 Aligned_cols=166 Identities=19% Similarity=0.257 Sum_probs=111.3
Q ss_pred cccccceeEEEEEcCCCCCHHHHHHHHhcCCCCCCC--CCccceeEEE-EEeCCEEEEEEecCCchh-------hHHhHH
Q 030429 6 SLFFKQEMELSLIGLQNAGKTSLVNTIATGGYSEDM--IPTVGFNMRK-VTKGNVTIKLWDLGGQRR-------FRTMWE 75 (177)
Q Consensus 6 ~~~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~--~~t~~~~~~~-~~~~~~~~~~~D~~g~~~-------~~~~~~ 75 (177)
.+....+++|+++|.+|+|||||+|+++++...+.. ..+..+..+. ...+.-.+.+||+||-.+ ++....
T Consensus 33 ~l~~~~pvnvLi~G~TG~GKSSliNALF~~~~~~v~~vg~~t~~~~~~~~~~~~~~l~lwDtPG~gdg~~~D~~~r~~~~ 112 (296)
T COG3596 33 QLTEKEPVNVLLMGATGAGKSSLINALFQGEVKEVSKVGVGTDITTRLRLSYDGENLVLWDTPGLGDGKDKDAEHRQLYR 112 (296)
T ss_pred hhcccCceeEEEecCCCCcHHHHHHHHHhccCceeeecccCCCchhhHHhhccccceEEecCCCcccchhhhHHHHHHHH
Confidence 344668899999999999999999999976544333 2233333222 234556789999999544 556667
Q ss_pred HHhcCCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccc----------C--H-HHHHHHhCc-
Q 030429 76 RYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEAL----------S--K-QALVDQLGL- 141 (177)
Q Consensus 76 ~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~----------~--~-~~~~~~~~~- 141 (177)
.++...|.+++++++.|+.--.. ...+.++.... .+.++++++|.+|..... + . +...++...
T Consensus 113 d~l~~~DLvL~l~~~~draL~~d-~~f~~dVi~~~--~~~~~i~~VtQ~D~a~p~~~W~~~~~~p~~a~~qfi~~k~~~~ 189 (296)
T COG3596 113 DYLPKLDLVLWLIKADDRALGTD-EDFLRDVIILG--LDKRVLFVVTQADRAEPGREWDSAGHQPSPAIKQFIEEKAEAL 189 (296)
T ss_pred HHhhhccEEEEeccCCCccccCC-HHHHHHHHHhc--cCceeEEEEehhhhhccccccccccCCCCHHHHHHHHHHHHHH
Confidence 78899999999999988753333 33334443332 248999999999986541 0 0 111111111
Q ss_pred ccccCCceeEEEeeecCCCChHHHHHHHHHHhh
Q 030429 142 ESITDREVCCYMISCKDSINIDAVIDWLIKHSK 174 (177)
Q Consensus 142 ~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~ 174 (177)
.....+-.|++..|.+.+.|++++...+++.+.
T Consensus 190 ~~~~q~V~pV~~~~~r~~wgl~~l~~ali~~lp 222 (296)
T COG3596 190 GRLFQEVKPVVAVSGRLPWGLKELVRALITALP 222 (296)
T ss_pred HHHHhhcCCeEEeccccCccHHHHHHHHHHhCc
Confidence 111223457888999999999999999998764
|
|
| >PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1 | Back alignment and domain information |
|---|
Probab=99.79 E-value=9.3e-19 Score=122.26 Aligned_cols=159 Identities=19% Similarity=0.276 Sum_probs=100.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCC---CCccceeEEEEE-eCCEEEEEEecCCchhhHHh-----HHHHhcCCCEE
Q 030429 14 ELSLIGLQNAGKTSLVNTIATGGYSEDM---IPTVGFNMRKVT-KGNVTIKLWDLGGQRRFRTM-----WERYCRGVSAI 84 (177)
Q Consensus 14 ~i~i~G~~~~GKSsli~~l~~~~~~~~~---~~t~~~~~~~~~-~~~~~~~~~D~~g~~~~~~~-----~~~~~~~~d~~ 84 (177)
||+++|+.||||||+.+.+.++..+.+. .+|.......+. .+...+++||+||+..+... ....++.++++
T Consensus 1 KiLLmG~~~SGKTSi~~vIF~~~~p~dT~~L~~T~~ve~~~v~~~~~~~l~iwD~pGq~~~~~~~~~~~~~~if~~v~~L 80 (232)
T PF04670_consen 1 KILLMGPRRSGKTSIRSVIFHKYSPRDTLRLEPTIDVEKSHVRFLSFLPLNIWDCPGQDDFMENYFNSQREEIFSNVGVL 80 (232)
T ss_dssp EEEEEESTTSSHHHHHHHHHS---GGGGGG-----SEEEEEEECTTSCEEEEEEE-SSCSTTHTTHTCCHHHHHCTESEE
T ss_pred CEEEEcCCCCChhhHHHHHHcCCCchhccccCCcCCceEEEEecCCCcEEEEEEcCCccccccccccccHHHHHhccCEE
Confidence 7999999999999999999866554443 367777766665 56789999999998766443 45678999999
Q ss_pred EEEEeCCCCCCHHHHHHHHHHHHcC--CCCCCCcEEEEeeCCCcccccCHHHHHH----HhCccccc--CCceeEEEeee
Q 030429 85 LYVVDAADRDSVPIARSELHELLMK--PSLSGIPLLVLGNKIDKSEALSKQALVD----QLGLESIT--DREVCCYMISC 156 (177)
Q Consensus 85 i~v~d~~~~~~~~~~~~~~~~~~~~--~~~~~~~~iiv~nK~D~~~~~~~~~~~~----~~~~~~~~--~~~~~~~~~Sa 156 (177)
|+|+|+.+.+ +.+....+...+.. ...++..+.+.++|+|+..+...++..+ .+...... ...+.++.||.
T Consensus 81 IyV~D~qs~~-~~~~l~~~~~~i~~l~~~sp~~~v~vfiHK~D~l~~~~r~~~~~~~~~~i~~~~~~~~~~~~~~~~TSI 159 (232)
T PF04670_consen 81 IYVFDAQSDD-YDEDLAYLSDCIEALRQYSPNIKVFVFIHKMDLLSEDEREEIFRDIQQRIRDELEDLGIEDITFFLTSI 159 (232)
T ss_dssp EEEEETT-ST-CHHHHHHHHHHHHHHHHHSTT-EEEEEEE-CCCS-HHHHHHHHHHHHHHHHHHHHHTT-TSEEEEEE-T
T ss_pred EEEEEccccc-HHHHHHHHHHHHHHHHHhCCCCeEEEEEeecccCCHHHHHHHHHHHHHHHHHHhhhccccceEEEeccC
Confidence 9999998554 44433333333222 1235788999999999976544332222 22111111 11478999999
Q ss_pred cCCCChHHHHHHHHHHhh
Q 030429 157 KDSINIDAVIDWLIKHSK 174 (177)
Q Consensus 157 ~~~~~i~~l~~~l~~~~~ 174 (177)
.+. .+-+.|..+++.+.
T Consensus 160 ~D~-Sly~A~S~Ivq~Li 176 (232)
T PF04670_consen 160 WDE-SLYEAWSKIVQKLI 176 (232)
T ss_dssp TST-HHHHHHHHHHHTTS
T ss_pred cCc-HHHHHHHHHHHHHc
Confidence 984 68888888887654
|
RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A. |
| >PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=6.7e-18 Score=128.86 Aligned_cols=163 Identities=15% Similarity=0.140 Sum_probs=105.6
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHhcCCCCCC-----CCCccceeEEEE-----------------Ee------------
Q 030429 9 FKQEMELSLIGLQNAGKTSLVNTIATGGYSED-----MIPTVGFNMRKV-----------------TK------------ 54 (177)
Q Consensus 9 ~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~-----~~~t~~~~~~~~-----------------~~------------ 54 (177)
....++|+++|+...|||||+.+|.+....+- ..-|+...+... ..
T Consensus 31 ~~~~~~ig~~GHVDhGKTtLv~aLtg~~~~r~~~E~~rGiTi~lGfa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (460)
T PTZ00327 31 RQATINIGTIGHVAHGKSTVVKALSGVKTVRFKREKVRNITIKLGYANAKIYKCPKCPRPTCYQSYGSSKPDNPPCPGCG 110 (460)
T ss_pred CCCcEEEEEEccCCCCHHHHHHHHhCCCcccchhhHHhCCchhccccccccccCcccCCcccccccCCCccccccccccc
Confidence 35678999999999999999999985332111 111111111100 00
Q ss_pred ----CCEEEEEEecCCchhhHHhHHHHhcCCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccc
Q 030429 55 ----GNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEAL 130 (177)
Q Consensus 55 ----~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~ 130 (177)
-...+.++|+||+++|...+...+..+|++++|+|++...........+... ... .-.++++|+||+|+.+.+
T Consensus 111 ~~~~~~~~i~~IDtPGH~~fi~~m~~g~~~~D~alLVVda~~g~~~~qT~ehl~i~-~~l--gi~~iIVvlNKiDlv~~~ 187 (460)
T PTZ00327 111 HKMTLKRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAANESCPQPQTSEHLAAV-EIM--KLKHIIILQNKIDLVKEA 187 (460)
T ss_pred ccccccceEeeeeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCccchhhHHHHHHH-HHc--CCCcEEEEEecccccCHH
Confidence 0246889999999999877777788999999999998642222223333222 221 124789999999997643
Q ss_pred CHHHHHHHhCcc--cccCCceeEEEeeecCCCChHHHHHHHHHHhh
Q 030429 131 SKQALVDQLGLE--SITDREVCCYMISCKDSINIDAVIDWLIKHSK 174 (177)
Q Consensus 131 ~~~~~~~~~~~~--~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~ 174 (177)
..++..+.+... .......+++++||++|.|+++|++.|.+.+.
T Consensus 188 ~~~~~~~ei~~~l~~~~~~~~~iipVSA~~G~nI~~Ll~~L~~~lp 233 (460)
T PTZ00327 188 QAQDQYEEIRNFVKGTIADNAPIIPISAQLKYNIDVVLEYICTQIP 233 (460)
T ss_pred HHHHHHHHHHHHHHhhccCCCeEEEeeCCCCCCHHHHHHHHHhhCC
Confidence 333332222211 11224568999999999999999999987554
|
|
| >KOG4423 consensus GTP-binding protein-like, RAS superfamily [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.78 E-value=4.9e-21 Score=125.72 Aligned_cols=162 Identities=22% Similarity=0.269 Sum_probs=125.9
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEE--EEeC---CEEEEEEecCCchhhHHhHHHHhcCCCEEEE
Q 030429 12 EMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRK--VTKG---NVTIKLWDLGGQRRFRTMWERYCRGVSAILY 86 (177)
Q Consensus 12 ~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~--~~~~---~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~ 86 (177)
-++++++|..|+||||++.++++..+...+..|++..... ...+ -+++++||+.||++|-.+..-+++.+++.++
T Consensus 25 L~k~lVig~~~vgkts~i~ryv~~nfs~~yRAtIgvdfalkVl~wdd~t~vRlqLwdIagQerfg~mtrVyykea~~~~i 104 (229)
T KOG4423|consen 25 LFKVLVIGDLGVGKTSSIKRYVHQNFSYHYRATIGVDFALKVLQWDDKTIVRLQLWDIAGQERFGNMTRVYYKEAHGAFI 104 (229)
T ss_pred hhhhheeeeccccchhHHHHHHHHHHHHHHHHHHhHHHHHHHhccChHHHHHHHHhcchhhhhhcceEEEEecCCcceEE
Confidence 4789999999999999999999888887777777754443 2222 3678999999999999999999999999999
Q ss_pred EEeCCCCCCHHHHHHHHHHHHcCCCC---CCCcEEEEeeCCCcccccCHHHHHHHhCcccccCCceeEEEeeecCCCChH
Q 030429 87 VVDAADRDSVPIARSELHELLMKPSL---SGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCKDSINID 163 (177)
Q Consensus 87 v~d~~~~~~~~~~~~~~~~~~~~~~~---~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 163 (177)
|||++....|+....|..++...... .-.|+++..||||.......+ .-..+......+.....+++|++.+.+++
T Consensus 105 Vfdvt~s~tfe~~skwkqdldsk~qLpng~Pv~~vllankCd~e~~a~~~-~~~~~d~f~kengf~gwtets~Kenkni~ 183 (229)
T KOG4423|consen 105 VFDVTRSLTFEPVSKWKQDLDSKLQLPNGTPVPCVLLANKCDQEKSAKNE-ATRQFDNFKKENGFEGWTETSAKENKNIP 183 (229)
T ss_pred EEEccccccccHHHHHHHhccCcccCCCCCcchheeccchhccChHhhhh-hHHHHHHHHhccCccceeeeccccccChh
Confidence 99999999999999999887655333 346889999999986542221 11112112222344568999999999999
Q ss_pred HHHHHHHHHhh
Q 030429 164 AVIDWLIKHSK 174 (177)
Q Consensus 164 ~l~~~l~~~~~ 174 (177)
|.-..+++++.
T Consensus 184 Ea~r~lVe~~l 194 (229)
T KOG4423|consen 184 EAQRELVEKIL 194 (229)
T ss_pred HHHHHHHHHHH
Confidence 99999998764
|
|
| >TIGR00503 prfC peptide chain release factor 3 | Back alignment and domain information |
|---|
Probab=99.78 E-value=2.1e-17 Score=128.39 Aligned_cols=116 Identities=20% Similarity=0.260 Sum_probs=82.4
Q ss_pred cccceeEEEEEcCCCCCHHHHHHHHhc-CCCCCC-----------------------CCCccceeEEEEEeCCEEEEEEe
Q 030429 8 FFKQEMELSLIGLQNAGKTSLVNTIAT-GGYSED-----------------------MIPTVGFNMRKVTKGNVTIKLWD 63 (177)
Q Consensus 8 ~~~~~~~i~i~G~~~~GKSsli~~l~~-~~~~~~-----------------------~~~t~~~~~~~~~~~~~~~~~~D 63 (177)
+..+..+|+++|.+++|||||+++++. ...... ...+.......++.+++.+++||
T Consensus 7 ~~~~~RniaiiGh~~aGKTTL~e~Ll~~~g~i~~~g~v~~~g~~~~t~~D~~~~E~~rgisi~~~~~~~~~~~~~inliD 86 (527)
T TIGR00503 7 EVDKRRTFAIISHPDAGKTTITEKVLLYGGAIQTAGAVKGRGSQRHAKSDWMEMEKQRGISITTSVMQFPYRDCLVNLLD 86 (527)
T ss_pred hhccCCEEEEEcCCCCCHHHHHHHHHHhCCCccccceeccccccccccCCCCHHHHhcCCcEEEEEEEEeeCCeEEEEEE
Confidence 456678999999999999999999862 111100 01122233345667889999999
Q ss_pred cCCchhhHHhHHHHhcCCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccc
Q 030429 64 LGGQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSE 128 (177)
Q Consensus 64 ~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~ 128 (177)
|||+.+|.......+..+|++++|+|+++.. ......++. .... .++|+++++||+|+..
T Consensus 87 TPG~~df~~~~~~~l~~aD~aIlVvDa~~gv-~~~t~~l~~-~~~~---~~~PiivviNKiD~~~ 146 (527)
T TIGR00503 87 TPGHEDFSEDTYRTLTAVDNCLMVIDAAKGV-ETRTRKLME-VTRL---RDTPIFTFMNKLDRDI 146 (527)
T ss_pred CCChhhHHHHHHHHHHhCCEEEEEEECCCCC-CHHHHHHHH-HHHh---cCCCEEEEEECccccC
Confidence 9999988877777889999999999997742 122233333 3332 4689999999999853
|
This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus. |
| >cd00066 G-alpha G protein alpha subunit | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.3e-17 Score=122.64 Aligned_cols=134 Identities=20% Similarity=0.270 Sum_probs=103.2
Q ss_pred CCccceeEEEEEeCCEEEEEEecCCchhhHHhHHHHhcCCCEEEEEEeCCCC----------CCHHHHHHHHHHHHcCCC
Q 030429 42 IPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAADR----------DSVPIARSELHELLMKPS 111 (177)
Q Consensus 42 ~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~----------~~~~~~~~~~~~~~~~~~ 111 (177)
.+|.|+....+..++..+.+||++|+...+..|..++.+++++++|+|+++. ..+.+....+..++....
T Consensus 146 ~~T~Gi~~~~f~~~~~~~~~~DvgGq~~~R~kW~~~f~~v~~iifvv~lsd~d~~~~e~~~~nrl~esl~~f~~i~~~~~ 225 (317)
T cd00066 146 VKTTGIVETKFTIKNLKFRMFDVGGQRSERKKWIHCFEDVTAIIFVVALSEYDQVLFEDESTNRMQESLNLFDSICNSRW 225 (317)
T ss_pred cccCCeeEEEEEecceEEEEECCCCCcccchhHHHHhCCCCEEEEEEEchhcccccccCCcchHHHHHHHHHHHHHhCcc
Confidence 4577777777888899999999999999999999999999999999999874 356777888888888777
Q ss_pred CCCCcEEEEeeCCCcccc------------------cCHHHHHHHhCccc-----ccCCceeEEEeeecCCCChHHHHHH
Q 030429 112 LSGIPLLVLGNKIDKSEA------------------LSKQALVDQLGLES-----ITDREVCCYMISCKDSINIDAVIDW 168 (177)
Q Consensus 112 ~~~~~~iiv~nK~D~~~~------------------~~~~~~~~~~~~~~-----~~~~~~~~~~~Sa~~~~~i~~l~~~ 168 (177)
..+.|+++++||.|+... ...++..+.+...+ ...+.+..+.++|.+-.+++.+|+.
T Consensus 226 ~~~~pill~~NK~D~f~~ki~~~~l~~~fp~y~g~~~~~~~~~~~i~~~F~~~~~~~~~~~~~~~t~a~Dt~~i~~vf~~ 305 (317)
T cd00066 226 FANTSIILFLNKKDLFEEKIKKSPLTDYFPDYTGPPNDYEEAAKFIRKKFLDLNRNPNKEIYPHFTCATDTENIRFVFDA 305 (317)
T ss_pred ccCCCEEEEccChHHHHHhhcCCCccccCCCCCCCCCCHHHHHHHHHHHHHHhhcCCCCeEEEEeccccchHHHHHHHHH
Confidence 778999999999996432 11222222221111 1234566678999999999999999
Q ss_pred HHHHhhh
Q 030429 169 LIKHSKT 175 (177)
Q Consensus 169 l~~~~~~ 175 (177)
+.+.+..
T Consensus 306 v~~~i~~ 312 (317)
T cd00066 306 VKDIILQ 312 (317)
T ss_pred HHHHHHH
Confidence 9887764
|
The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute. |
| >COG0536 Obg Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.9e-17 Score=118.86 Aligned_cols=171 Identities=22% Similarity=0.240 Sum_probs=116.3
Q ss_pred eeecccccceeEEEEEcCCCCCHHHHHHHHhcCCC--CCCCCCccceeEEEEEe-CCEEEEEEecCCchhhHH-------
Q 030429 3 LHISLFFKQEMELSLIGLQNAGKTSLVNTIATGGY--SEDMIPTVGFNMRKVTK-GNVTIKLWDLGGQRRFRT------- 72 (177)
Q Consensus 3 ~~~~~~~~~~~~i~i~G~~~~GKSsli~~l~~~~~--~~~~~~t~~~~~~~~~~-~~~~~~~~D~~g~~~~~~------- 72 (177)
+...++.+--..|.++|.|++|||||++.+...+. ......|.......+.. ..-.|.+-|+||.-...+
T Consensus 150 r~v~LELKllADVGLVG~PNaGKSTlls~vS~AkPKIadYpFTTL~PnLGvV~~~~~~sfv~ADIPGLIEGAs~G~GLG~ 229 (369)
T COG0536 150 RDLRLELKLLADVGLVGLPNAGKSTLLSAVSAAKPKIADYPFTTLVPNLGVVRVDGGESFVVADIPGLIEGASEGVGLGL 229 (369)
T ss_pred EEEEEEEeeecccccccCCCCcHHHHHHHHhhcCCcccCCccccccCcccEEEecCCCcEEEecCcccccccccCCCccH
Confidence 34567777788899999999999999999986553 23333455555555553 455699999999322211
Q ss_pred hHHHHhcCCCEEEEEEeCCCCC---CHHHHHHHHHHHHcC-CCCCCCcEEEEeeCCCcccc-cCHHHHHHHhCcccccCC
Q 030429 73 MWERYCRGVSAILYVVDAADRD---SVPIARSELHELLMK-PSLSGIPLLVLGNKIDKSEA-LSKQALVDQLGLESITDR 147 (177)
Q Consensus 73 ~~~~~~~~~d~~i~v~d~~~~~---~~~~~~~~~~~~~~~-~~~~~~~~iiv~nK~D~~~~-~~~~~~~~~~~~~~~~~~ 147 (177)
..-.+++.|.+++.|+|++..+ ..+.......++..+ .....+|.++|+||+|+... ++.+++.+.+.....+.
T Consensus 230 ~FLrHIERt~vL~hviD~s~~~~~dp~~~~~~i~~EL~~Y~~~L~~K~~ivv~NKiD~~~~~e~~~~~~~~l~~~~~~~- 308 (369)
T COG0536 230 RFLRHIERTRVLLHVIDLSPIDGRDPIEDYQTIRNELEKYSPKLAEKPRIVVLNKIDLPLDEEELEELKKALAEALGWE- 308 (369)
T ss_pred HHHHHHHhhheeEEEEecCcccCCCHHHHHHHHHHHHHHhhHHhccCceEEEEeccCCCcCHHHHHHHHHHHHHhcCCC-
Confidence 1123467799999999998654 355555555555444 33457899999999996543 44445555554322222
Q ss_pred ceeEEEeeecCCCChHHHHHHHHHHhhhc
Q 030429 148 EVCCYMISCKDSINIDAVIDWLIKHSKTA 176 (177)
Q Consensus 148 ~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~ 176 (177)
..+++|+.++.|++++...+.+.+.+.
T Consensus 309 --~~~~ISa~t~~g~~~L~~~~~~~l~~~ 335 (369)
T COG0536 309 --VFYLISALTREGLDELLRALAELLEET 335 (369)
T ss_pred --cceeeehhcccCHHHHHHHHHHHHHHh
Confidence 122299999999999999999987754
|
|
| >COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.76 E-value=4.1e-17 Score=123.28 Aligned_cols=157 Identities=22% Similarity=0.259 Sum_probs=113.4
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCC--ccceeEEEEEe---CCEEEEEEecCCchhhHHhHHHHhcCCCEEE
Q 030429 11 QEMELSLIGLQNAGKTSLVNTIATGGYSEDMIP--TVGFNMRKVTK---GNVTIKLWDLGGQRRFRTMWERYCRGVSAIL 85 (177)
Q Consensus 11 ~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~--t~~~~~~~~~~---~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i 85 (177)
+..-|++||+...|||||+..+-.........- |..+.-+.+.. +...+.++|||||+-|..+...-..-+|.++
T Consensus 4 R~PvVtimGHVDHGKTtLLD~IR~t~Va~~EaGGITQhIGA~~v~~~~~~~~~itFiDTPGHeAFt~mRaRGa~vtDIaI 83 (509)
T COG0532 4 RPPVVTIMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAYQVPLDVIKIPGITFIDTPGHEAFTAMRARGASVTDIAI 83 (509)
T ss_pred CCCEEEEeCcccCCccchhhhHhcCccccccCCceeeEeeeEEEEeccCCCceEEEEcCCcHHHHHHHHhcCCccccEEE
Confidence 456789999999999999999986665433222 33333444443 3468889999999999998888888899999
Q ss_pred EEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccCHHHHHHHhCcccc----cCCceeEEEeeecCCCC
Q 030429 86 YVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESI----TDREVCCYMISCKDSIN 161 (177)
Q Consensus 86 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~Sa~~~~~ 161 (177)
+|++++|.-.-+.... . .+....+.|++++.||+|+++. .++....++..... +.+...++++||++|+|
T Consensus 84 LVVa~dDGv~pQTiEA--I---~hak~a~vP~iVAiNKiDk~~~-np~~v~~el~~~gl~~E~~gg~v~~VpvSA~tg~G 157 (509)
T COG0532 84 LVVAADDGVMPQTIEA--I---NHAKAAGVPIVVAINKIDKPEA-NPDKVKQELQEYGLVPEEWGGDVIFVPVSAKTGEG 157 (509)
T ss_pred EEEEccCCcchhHHHH--H---HHHHHCCCCEEEEEecccCCCC-CHHHHHHHHHHcCCCHhhcCCceEEEEeeccCCCC
Confidence 9999987543333222 1 2223358999999999999854 34444444433222 34567899999999999
Q ss_pred hHHHHHHHHHHh
Q 030429 162 IDAVIDWLIKHS 173 (177)
Q Consensus 162 i~~l~~~l~~~~ 173 (177)
+++|++.+.-.+
T Consensus 158 i~eLL~~ill~a 169 (509)
T COG0532 158 IDELLELILLLA 169 (509)
T ss_pred HHHHHHHHHHHH
Confidence 999999887654
|
|
| >PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse | Back alignment and domain information |
|---|
Probab=99.76 E-value=5.9e-17 Score=102.65 Aligned_cols=104 Identities=24% Similarity=0.248 Sum_probs=71.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCC---CCCCCCccceeEEEEEeCCEEEEEEecCCchhh---------HHhHHHHhcCC
Q 030429 14 ELSLIGLQNAGKTSLVNTIATGGY---SEDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRF---------RTMWERYCRGV 81 (177)
Q Consensus 14 ~i~i~G~~~~GKSsli~~l~~~~~---~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~---------~~~~~~~~~~~ 81 (177)
+|+++|.+|+|||||+|+|++... ......|.......+..++..+.++||||.... .......+..+
T Consensus 1 ~V~iiG~~~~GKSTlin~l~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~vDtpG~~~~~~~~~~~~~~~~~~~~~~~~ 80 (116)
T PF01926_consen 1 RVAIIGRPNVGKSTLINALTGKKLAKVSNIPGTTRDPVYGQFEYNNKKFILVDTPGINDGESQDNDGKEIRKFLEQISKS 80 (116)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSTSSEESSSTTSSSSEEEEEEEETTEEEEEEESSSCSSSSHHHHHHHHHHHHHHHHCTE
T ss_pred CEEEECCCCCCHHHHHHHHhccccccccccccceeeeeeeeeeeceeeEEEEeCCCCcccchhhHHHHHHHHHHHHHHHC
Confidence 689999999999999999997532 222334555555566778899999999994321 11223345889
Q ss_pred CEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeC
Q 030429 82 SAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNK 123 (177)
Q Consensus 82 d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK 123 (177)
|++++|+|++++ .-+.....+..+ . .++|+++|+||
T Consensus 81 d~ii~vv~~~~~-~~~~~~~~~~~l-~----~~~~~i~v~NK 116 (116)
T PF01926_consen 81 DLIIYVVDASNP-ITEDDKNILREL-K----NKKPIILVLNK 116 (116)
T ss_dssp SEEEEEEETTSH-SHHHHHHHHHHH-H----TTSEEEEEEES
T ss_pred CEEEEEEECCCC-CCHHHHHHHHHH-h----cCCCEEEEEcC
Confidence 999999997662 112223333333 2 47999999998
|
These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A .... |
| >smart00275 G_alpha G protein alpha subunit | Back alignment and domain information |
|---|
Probab=99.76 E-value=2.7e-17 Score=121.85 Aligned_cols=134 Identities=19% Similarity=0.284 Sum_probs=102.3
Q ss_pred CCccceeEEEEEeCCEEEEEEecCCchhhHHhHHHHhcCCCEEEEEEeCCCC----------CCHHHHHHHHHHHHcCCC
Q 030429 42 IPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAADR----------DSVPIARSELHELLMKPS 111 (177)
Q Consensus 42 ~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~----------~~~~~~~~~~~~~~~~~~ 111 (177)
.+|.|+....+..++..+.+||++|+...+..|..++.+++++++|+|+++. ..+.+....+..++....
T Consensus 169 ~~T~Gi~~~~f~~~~~~~~~~DvgGqr~~R~kW~~~f~~v~~IiFvvdlSd~d~~~~Ed~~~nrl~esl~~f~~l~~~~~ 248 (342)
T smart00275 169 VPTTGIQETAFIVKKLFFRMFDVGGQRSERKKWIHCFDNVTAIIFCVALSEYDQVLEEDESTNRMQESLNLFESICNSRW 248 (342)
T ss_pred CCccceEEEEEEECCeEEEEEecCCchhhhhhHHHHhCCCCEEEEEEECcccccchhccCcchHHHHHHHHHHHHHcCcc
Confidence 3566777777888899999999999999999999999999999999999974 357777888888888777
Q ss_pred CCCCcEEEEeeCCCccccc-----------------CHHHHHHHhCc----ccc--cCCceeEEEeeecCCCChHHHHHH
Q 030429 112 LSGIPLLVLGNKIDKSEAL-----------------SKQALVDQLGL----ESI--TDREVCCYMISCKDSINIDAVIDW 168 (177)
Q Consensus 112 ~~~~~~iiv~nK~D~~~~~-----------------~~~~~~~~~~~----~~~--~~~~~~~~~~Sa~~~~~i~~l~~~ 168 (177)
..+.|+++++||.|+.... +.+...+.+.. ... ..+.+-.+.+||.+-.++..+|+.
T Consensus 249 ~~~~piil~~NK~D~~~~Kl~~~~l~~~fp~y~g~~~~~~~~~yi~~~F~~~~~~~~~r~~y~h~t~a~Dt~~~~~v~~~ 328 (342)
T smart00275 249 FANTSIILFLNKIDLFEEKIKKVPLVDYFPDYKGPNDYEAAAKFIKQKFLRLNRNSSRKSIYHHFTCATDTRNIRVVFDA 328 (342)
T ss_pred ccCCcEEEEEecHHhHHHHhCCCchhccCCCCCCCCCHHHHHHHHHHHHHHhccCCCCceEEEEEeeecccHHHHHHHHH
Confidence 7789999999999975421 11222222111 111 224456678999999999999999
Q ss_pred HHHHhhh
Q 030429 169 LIKHSKT 175 (177)
Q Consensus 169 l~~~~~~ 175 (177)
+.+.+.+
T Consensus 329 v~~~I~~ 335 (342)
T smart00275 329 VKDIILQ 335 (342)
T ss_pred HHHHHHH
Confidence 8887654
|
Subunit of G proteins that contains the guanine nucleotide binding site |
| >COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.5e-17 Score=122.09 Aligned_cols=154 Identities=21% Similarity=0.157 Sum_probs=105.8
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHhcC---------------------------------CCCCCCCCccceeEEEEEeC
Q 030429 9 FKQEMELSLIGLQNAGKTSLVNTIATG---------------------------------GYSEDMIPTVGFNMRKVTKG 55 (177)
Q Consensus 9 ~~~~~~i~i~G~~~~GKSsli~~l~~~---------------------------------~~~~~~~~t~~~~~~~~~~~ 55 (177)
.+..++++++|+..+|||||+-+|+-. ...+...-|+......++.+
T Consensus 4 ~Kph~nl~~iGHVD~GKSTl~GrLly~~G~id~~tmeK~~~ea~~~gK~sf~fawvlD~tkeERerGvTi~~~~~~fet~ 83 (428)
T COG5256 4 EKPHLNLVFIGHVDAGKSTLVGRLLYDLGEIDKRTMEKLEKEAKELGKESFKFAWVLDKTKEERERGVTIDVAHSKFETD 83 (428)
T ss_pred CCCceEEEEEcCCCCCchhhhhhhHHHhCCCCHHHHHHHHHHHHhcCCCceEEEEEecCChhHHhcceEEEEEEEEeecC
Confidence 466799999999999999999999810 11233444666666667788
Q ss_pred CEEEEEEecCCchhhHHhHHHHhcCCCEEEEEEeCCCCC---CH--HHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccc
Q 030429 56 NVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAADRD---SV--PIARSELHELLMKPSLSGIPLLVLGNKIDKSEAL 130 (177)
Q Consensus 56 ~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~---~~--~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~ 130 (177)
.+.+.++|+||+++|-..+.....+||++++|+|+++.+ ++ ....+.-.-+.... .-...|+++||+|..+..
T Consensus 84 k~~~tIiDaPGHrdFvknmItGasqAD~aVLVV~a~~~efE~g~~~~gQtrEH~~La~tl--Gi~~lIVavNKMD~v~wd 161 (428)
T COG5256 84 KYNFTIIDAPGHRDFVKNMITGASQADVAVLVVDARDGEFEAGFGVGGQTREHAFLARTL--GIKQLIVAVNKMDLVSWD 161 (428)
T ss_pred CceEEEeeCCchHHHHHHhhcchhhccEEEEEEECCCCccccccccCCchhHHHHHHHhc--CCceEEEEEEcccccccC
Confidence 899999999999999988888889999999999998763 11 11111111111221 234688889999998743
Q ss_pred C--HHH----HHHHhCcccccCCceeEEEeeecCCCChHH
Q 030429 131 S--KQA----LVDQLGLESITDREVCCYMISCKDSINIDA 164 (177)
Q Consensus 131 ~--~~~----~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 164 (177)
+ .++ +...+....+.....+|+++|+..|.|+.+
T Consensus 162 e~rf~ei~~~v~~l~k~~G~~~~~v~FIPiSg~~G~Nl~~ 201 (428)
T COG5256 162 EERFEEIVSEVSKLLKMVGYNPKDVPFIPISGFKGDNLTK 201 (428)
T ss_pred HHHHHHHHHHHHHHHHHcCCCccCCeEEecccccCCcccc
Confidence 2 222 222222233334467899999999998754
|
|
| >cd01852 AIG1 AIG1 (avrRpt2-induced gene 1) | Back alignment and domain information |
|---|
Probab=99.76 E-value=5.6e-17 Score=111.91 Aligned_cols=161 Identities=17% Similarity=0.050 Sum_probs=98.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCC----CCccceeEEEEEeCCEEEEEEecCCchhhH-------HhHH----HH
Q 030429 13 MELSLIGLQNAGKTSLVNTIATGGYSEDM----IPTVGFNMRKVTKGNVTIKLWDLGGQRRFR-------TMWE----RY 77 (177)
Q Consensus 13 ~~i~i~G~~~~GKSsli~~l~~~~~~~~~----~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~-------~~~~----~~ 77 (177)
++|+++|.+|+|||||+|++++....... ..|..........++..+.++||||-.... .... ..
T Consensus 1 ~~i~lvG~~g~GKSsl~N~ilg~~~~~~~~~~~~~T~~~~~~~~~~~~~~i~viDTPG~~d~~~~~~~~~~~i~~~~~~~ 80 (196)
T cd01852 1 LRLVLVGKTGAGKSATGNTILGREVFESKLSASSVTKTCQKESAVWDGRRVNVIDTPGLFDTSVSPEQLSKEIVRCLSLS 80 (196)
T ss_pred CEEEEECCCCCCHHHHHHHhhCCCccccccCCCCcccccceeeEEECCeEEEEEECcCCCCccCChHHHHHHHHHHHHhc
Confidence 47999999999999999999976543222 345555666666788999999999943321 1111 12
Q ss_pred hcCCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCC-CCCcEEEEeeCCCcccccCHHHHHHHhCc------ccccCCcee
Q 030429 78 CRGVSAILYVVDAADRDSVPIARSELHELLMKPSL-SGIPLLVLGNKIDKSEALSKQALVDQLGL------ESITDREVC 150 (177)
Q Consensus 78 ~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~-~~~~~iiv~nK~D~~~~~~~~~~~~~~~~------~~~~~~~~~ 150 (177)
..+.|++++|+++... + ......+..+...... .-.+++++.|++|.......++....... .....+.+.
T Consensus 81 ~~g~~~illVi~~~~~-t-~~d~~~l~~l~~~fg~~~~~~~ivv~T~~d~l~~~~~~~~~~~~~~~l~~l~~~c~~r~~~ 158 (196)
T cd01852 81 APGPHAFLLVVPLGRF-T-EEEEQAVETLQELFGEKVLDHTIVLFTRGDDLEGGTLEDYLENSCEALKRLLEKCGGRYVA 158 (196)
T ss_pred CCCCEEEEEEEECCCc-C-HHHHHHHHHHHHHhChHhHhcEEEEEECccccCCCcHHHHHHhccHHHHHHHHHhCCeEEE
Confidence 4578999999998762 2 2222223333222121 12578999999998765443332222110 001111111
Q ss_pred EEEe--eecCCCChHHHHHHHHHHhhh
Q 030429 151 CYMI--SCKDSINIDAVIDWLIKHSKT 175 (177)
Q Consensus 151 ~~~~--Sa~~~~~i~~l~~~l~~~~~~ 175 (177)
+-.. |+..+.++++|++.|.+++.+
T Consensus 159 f~~~~~~~~~~~q~~~Ll~~i~~~~~~ 185 (196)
T cd01852 159 FNNKAKGEEQEQQVKELLAKVESMVKE 185 (196)
T ss_pred EeCCCCcchhHHHHHHHHHHHHHHHHh
Confidence 1112 367788999999999998875
|
This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins). |
| >KOG0462 consensus Elongation factor-type GTP-binding protein [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.75 E-value=2.5e-17 Score=124.36 Aligned_cols=158 Identities=18% Similarity=0.217 Sum_probs=116.5
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcCC-----------------CCCCCCCccceeEEEEEeCC---EEEEEEecCCchh
Q 030429 10 KQEMELSLIGLQNAGKTSLVNTIATGG-----------------YSEDMIPTVGFNMRKVTKGN---VTIKLWDLGGQRR 69 (177)
Q Consensus 10 ~~~~~i~i~G~~~~GKSsli~~l~~~~-----------------~~~~~~~t~~~~~~~~~~~~---~~~~~~D~~g~~~ 69 (177)
.+--|+.|+-+-..|||||..+++... ..+..+-|+..++..+.+.+ +.++++|||||.+
T Consensus 58 ~~iRNfsIIAHVDHGKSTLaDrLLe~tg~i~~~~~q~q~LDkl~vERERGITIkaQtasify~~~~~ylLNLIDTPGHvD 137 (650)
T KOG0462|consen 58 ENIRNFSIIAHVDHGKSTLADRLLELTGTIDNNIGQEQVLDKLQVERERGITIKAQTASIFYKDGQSYLLNLIDTPGHVD 137 (650)
T ss_pred hhccceEEEEEecCCcchHHHHHHHHhCCCCCCCchhhhhhhhhhhhhcCcEEEeeeeEEEEEcCCceEEEeecCCCccc
Confidence 556789999999999999999998321 12333445555555555555 9999999999999
Q ss_pred hHHhHHHHhcCCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccCHHHHHHHhCcccccCCce
Q 030429 70 FRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREV 149 (177)
Q Consensus 70 ~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~ 149 (177)
|.......+.-|+++++|+|++..-.-+.....+..+ + .+..+|.|+||+|++.. +.+++..++. ..+.....
T Consensus 138 Fs~EVsRslaac~G~lLvVDA~qGvqAQT~anf~lAf-e----~~L~iIpVlNKIDlp~a-dpe~V~~q~~-~lF~~~~~ 210 (650)
T KOG0462|consen 138 FSGEVSRSLAACDGALLVVDASQGVQAQTVANFYLAF-E----AGLAIIPVLNKIDLPSA-DPERVENQLF-ELFDIPPA 210 (650)
T ss_pred ccceehehhhhcCceEEEEEcCcCchHHHHHHHHHHH-H----cCCeEEEeeeccCCCCC-CHHHHHHHHH-HHhcCCcc
Confidence 9988888899999999999997754333333333333 2 36789999999999875 3445444443 23334445
Q ss_pred eEEEeeecCCCChHHHHHHHHHHhh
Q 030429 150 CCYMISCKDSINIDAVIDWLIKHSK 174 (177)
Q Consensus 150 ~~~~~Sa~~~~~i~~l~~~l~~~~~ 174 (177)
.++.+||++|.|+++++++|++.+.
T Consensus 211 ~~i~vSAK~G~~v~~lL~AII~rVP 235 (650)
T KOG0462|consen 211 EVIYVSAKTGLNVEELLEAIIRRVP 235 (650)
T ss_pred ceEEEEeccCccHHHHHHHHHhhCC
Confidence 7999999999999999999999764
|
|
| >cd01885 EF2 EF2 (for archaea and eukarya) | Back alignment and domain information |
|---|
Probab=99.75 E-value=2.8e-17 Score=114.82 Aligned_cols=109 Identities=24% Similarity=0.241 Sum_probs=77.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCC--CC----------------CCCCccceeEE--EEE--------eCCEEEEEEecC
Q 030429 14 ELSLIGLQNAGKTSLVNTIATGGY--SE----------------DMIPTVGFNMR--KVT--------KGNVTIKLWDLG 65 (177)
Q Consensus 14 ~i~i~G~~~~GKSsli~~l~~~~~--~~----------------~~~~t~~~~~~--~~~--------~~~~~~~~~D~~ 65 (177)
+|+++|+.++|||||+.+|+...- .. ...-|+..... .+. ..++.+++||||
T Consensus 2 NvaiiGhvd~GKTTL~d~Ll~~~g~i~~~~~g~~~~~D~~~~E~~RgiTi~~~~~~~~~~~~~~~~~~~~~~~i~iiDTP 81 (222)
T cd01885 2 NICIIAHVDHGKTTLSDSLLASAGIISEKLAGKARYMDSREDEQERGITMKSSAISLYFEYEEEDKADGNEYLINLIDSP 81 (222)
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCCCccccCCceeeccCCHHHHHhccccccceEEEEEecCcccccCCCceEEEEECCC
Confidence 799999999999999999974321 00 01112222111 122 227889999999
Q ss_pred CchhhHHhHHHHhcCCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcc
Q 030429 66 GQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKS 127 (177)
Q Consensus 66 g~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~ 127 (177)
|+.+|......++..+|++++|+|+++...... ...+..... .++|+++|+||+|+.
T Consensus 82 G~~~f~~~~~~~l~~aD~~ilVvD~~~g~~~~t-~~~l~~~~~----~~~p~ilviNKiD~~ 138 (222)
T cd01885 82 GHVDFSSEVTAALRLCDGALVVVDAVEGVCVQT-ETVLRQALK----ERVKPVLVINKIDRL 138 (222)
T ss_pred CccccHHHHHHHHHhcCeeEEEEECCCCCCHHH-HHHHHHHHH----cCCCEEEEEECCCcc
Confidence 999999999999999999999999987654443 233333322 357999999999975
|
Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco |
| >KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.75 E-value=6.8e-17 Score=120.69 Aligned_cols=166 Identities=19% Similarity=0.169 Sum_probs=110.3
Q ss_pred cccceeEEEEEcCCCCCHHHHHHHHhcCCC---CCCCCCccceeEEEEEeCCEEEEEEecCCchhhH---------HhHH
Q 030429 8 FFKQEMELSLIGLQNAGKTSLVNTIATGGY---SEDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRFR---------TMWE 75 (177)
Q Consensus 8 ~~~~~~~i~i~G~~~~GKSsli~~l~~~~~---~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~---------~~~~ 75 (177)
..+..++|+++|+||+|||||+|.|.+... .+..+.|-......++.+++.+.+.||+|.++-. ....
T Consensus 264 ~lq~gl~iaIvGrPNvGKSSLlNaL~~~drsIVSpv~GTTRDaiea~v~~~G~~v~L~DTAGiRe~~~~~iE~~gI~rA~ 343 (531)
T KOG1191|consen 264 RLQSGLQIAIVGRPNVGKSSLLNALSREDRSIVSPVPGTTRDAIEAQVTVNGVPVRLSDTAGIREESNDGIEALGIERAR 343 (531)
T ss_pred HhhcCCeEEEEcCCCCCHHHHHHHHhcCCceEeCCCCCcchhhheeEeecCCeEEEEEeccccccccCChhHHHhHHHHH
Confidence 346679999999999999999999997653 4445556666677788999999999999965511 1112
Q ss_pred HHhcCCCEEEEEEeC--CCCCCHHHHHHHHHHHHcC-----CCCCCCcEEEEeeCCCccccc--CHHHHHHHhCcccccC
Q 030429 76 RYCRGVSAILYVVDA--ADRDSVPIARSELHELLMK-----PSLSGIPLLVLGNKIDKSEAL--SKQALVDQLGLESITD 146 (177)
Q Consensus 76 ~~~~~~d~~i~v~d~--~~~~~~~~~~~~~~~~~~~-----~~~~~~~~iiv~nK~D~~~~~--~~~~~~~~~~~~~~~~ 146 (177)
..+..+|++++|+|+ ++-++-..+...+...... ....+.|++++.||.|+...- .........+. ....
T Consensus 344 k~~~~advi~~vvda~~~~t~sd~~i~~~l~~~~~g~~~~~~~~~~~~~i~~~nk~D~~s~~~~~~~~~~~~~~~-~~~~ 422 (531)
T KOG1191|consen 344 KRIERADVILLVVDAEESDTESDLKIARILETEGVGLVVIVNKMEKQRIILVANKSDLVSKIPEMTKIPVVYPSA-EGRS 422 (531)
T ss_pred HHHhhcCEEEEEecccccccccchHHHHHHHHhccceEEEeccccccceEEEechhhccCccccccCCceecccc-ccCc
Confidence 347789999999999 4433333333333332111 222357999999999987651 11111111111 1111
Q ss_pred CceeEEEeeecCCCChHHHHHHHHHHhh
Q 030429 147 REVCCYMISCKDSINIDAVIDWLIKHSK 174 (177)
Q Consensus 147 ~~~~~~~~Sa~~~~~i~~l~~~l~~~~~ 174 (177)
..-...++|+++++|+++|.+.+...+.
T Consensus 423 ~~~i~~~vs~~tkeg~~~L~~all~~~~ 450 (531)
T KOG1191|consen 423 VFPIVVEVSCTTKEGCERLSTALLNIVE 450 (531)
T ss_pred ccceEEEeeechhhhHHHHHHHHHHHHH
Confidence 2224556999999999999999987654
|
|
| >TIGR00484 EF-G translation elongation factor EF-G | Back alignment and domain information |
|---|
Probab=99.75 E-value=6.1e-17 Score=130.14 Aligned_cols=116 Identities=20% Similarity=0.165 Sum_probs=85.2
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHhcCC--C------CC------------CCCCccceeEEEEEeCCEEEEEEecCCch
Q 030429 9 FKQEMELSLIGLQNAGKTSLVNTIATGG--Y------SE------------DMIPTVGFNMRKVTKGNVTIKLWDLGGQR 68 (177)
Q Consensus 9 ~~~~~~i~i~G~~~~GKSsli~~l~~~~--~------~~------------~~~~t~~~~~~~~~~~~~~~~~~D~~g~~ 68 (177)
..+-.+|+++|.+++|||||+++|+... . .. ....|.......+..++.++.+|||||+.
T Consensus 7 ~~~irni~iiG~~~~GKsTL~~~ll~~~g~~~~~~~~~~g~~~~D~~~~e~~rgiti~~~~~~~~~~~~~i~liDTPG~~ 86 (689)
T TIGR00484 7 LNRFRNIGISAHIDAGKTTTTERILFYTGRIHKIGEVHDGAATMDWMEQEKERGITITSAATTVFWKGHRINIIDTPGHV 86 (689)
T ss_pred cccccEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCCHHHHhcCCCEecceEEEEECCeEEEEEECCCCc
Confidence 3455699999999999999999997311 1 00 12224444555677789999999999999
Q ss_pred hhHHhHHHHhcCCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccc
Q 030429 69 RFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEA 129 (177)
Q Consensus 69 ~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~ 129 (177)
++......++..+|++++|+|+++...... ...+..... .++|+++++||+|+...
T Consensus 87 ~~~~~~~~~l~~~D~~ilVvda~~g~~~~~-~~~~~~~~~----~~~p~ivviNK~D~~~~ 142 (689)
T TIGR00484 87 DFTVEVERSLRVLDGAVAVLDAVGGVQPQS-ETVWRQANR----YEVPRIAFVNKMDKTGA 142 (689)
T ss_pred chhHHHHHHHHHhCEEEEEEeCCCCCChhH-HHHHHHHHH----cCCCEEEEEECCCCCCC
Confidence 888888888999999999999987544432 233333322 36899999999999764
|
After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G. |
| >PRK12739 elongation factor G; Reviewed | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.6e-16 Score=127.64 Aligned_cols=117 Identities=20% Similarity=0.176 Sum_probs=86.1
Q ss_pred cccceeEEEEEcCCCCCHHHHHHHHhcCC--------CC------------CCCCCccceeEEEEEeCCEEEEEEecCCc
Q 030429 8 FFKQEMELSLIGLQNAGKTSLVNTIATGG--------YS------------EDMIPTVGFNMRKVTKGNVTIKLWDLGGQ 67 (177)
Q Consensus 8 ~~~~~~~i~i~G~~~~GKSsli~~l~~~~--------~~------------~~~~~t~~~~~~~~~~~~~~~~~~D~~g~ 67 (177)
...+-.+|+++|.+++|||||+++|+... .. ....-|.......+..++.+++++||||+
T Consensus 4 ~~~~irni~iiGh~~~GKsTL~~~ll~~~g~~~~~~~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~ 83 (691)
T PRK12739 4 PLEKTRNIGIMAHIDAGKTTTTERILYYTGKSHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKGHRINIIDTPGH 83 (691)
T ss_pred CccCeeEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCChhHhhcCCCccceeEEEEECCEEEEEEcCCCH
Confidence 34566799999999999999999997321 01 12233555555667778999999999999
Q ss_pred hhhHHhHHHHhcCCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccc
Q 030429 68 RRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEA 129 (177)
Q Consensus 68 ~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~ 129 (177)
.+|...+...+..+|++++|+|+.+...... ...+..... .++|+++++||+|+...
T Consensus 84 ~~f~~e~~~al~~~D~~ilVvDa~~g~~~qt-~~i~~~~~~----~~~p~iv~iNK~D~~~~ 140 (691)
T PRK12739 84 VDFTIEVERSLRVLDGAVAVFDAVSGVEPQS-ETVWRQADK----YGVPRIVFVNKMDRIGA 140 (691)
T ss_pred HHHHHHHHHHHHHhCeEEEEEeCCCCCCHHH-HHHHHHHHH----cCCCEEEEEECCCCCCC
Confidence 9888888888999999999999977533222 233333322 36899999999998753
|
|
| >KOG0090 consensus Signal recognition particle receptor, beta subunit (small G protein superfamily) [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.75 E-value=6.7e-17 Score=108.81 Aligned_cols=163 Identities=26% Similarity=0.373 Sum_probs=112.9
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEeCCEEEEEEecCCchhhHHhHHHHhc---CCCEEE
Q 030429 9 FKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTMWERYCR---GVSAIL 85 (177)
Q Consensus 9 ~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~---~~d~~i 85 (177)
..+.-.|+++|+.+||||+|.-+|..+.. +.....++.+...+..++...+++|.||+.+.+.....++. .+-+++
T Consensus 35 rs~~~~Vll~Gl~dSGKT~LF~qL~~gs~-~~TvtSiepn~a~~r~gs~~~~LVD~PGH~rlR~kl~e~~~~~~~akaiV 113 (238)
T KOG0090|consen 35 RSKQNAVLLVGLSDSGKTSLFTQLITGSH-RGTVTSIEPNEATYRLGSENVTLVDLPGHSRLRRKLLEYLKHNYSAKAIV 113 (238)
T ss_pred hccCCcEEEEecCCCCceeeeeehhcCCc-cCeeeeeccceeeEeecCcceEEEeCCCcHHHHHHHHHHccccccceeEE
Confidence 34456899999999999999999987743 34444555566666677777899999999999988888877 688999
Q ss_pred EEEeCCC-CCCHHHHHHHHHHHHcCC--CCCCCcEEEEeeCCCcccccCHHHHHHHhCc---------------------
Q 030429 86 YVVDAAD-RDSVPIARSELHELLMKP--SLSGIPLLVLGNKIDKSEALSKQALVDQLGL--------------------- 141 (177)
Q Consensus 86 ~v~d~~~-~~~~~~~~~~~~~~~~~~--~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~--------------------- 141 (177)
+|+|... ..........+-.++... ....+|++++.||.|+.-....+.+.+.++.
T Consensus 114 FVVDSa~f~k~vrdvaefLydil~~~~~~~~~~~vLIaCNKqDl~tAkt~~~Ir~~LEkEi~~lr~sRsa~~~~~~ed~~ 193 (238)
T KOG0090|consen 114 FVVDSATFLKNVRDVAEFLYDILLDSRVKKNKPPVLIACNKQDLFTAKTAEKIRQQLEKEIHKLRESRSALRSISDEDIA 193 (238)
T ss_pred EEEeccccchhhHHHHHHHHHHHHhhccccCCCCEEEEecchhhhhcCcHHHHHHHHHHHHHHHHHHHhhhhcccccccc
Confidence 9999854 223334444444443433 2346899999999998765443222222210
Q ss_pred ----------c----cccCCceeEEEeeecCCCChHHHHHHHHHHh
Q 030429 142 ----------E----SITDREVCCYMISCKDSINIDAVIDWLIKHS 173 (177)
Q Consensus 142 ----------~----~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~ 173 (177)
. ......+.|.++|++++ +++++-+|+.+.+
T Consensus 194 ~~~tlg~~g~dF~fs~l~~~~V~F~e~S~~~~-~i~~~~~wi~~~l 238 (238)
T KOG0090|consen 194 KDFTLGKEGEDFKFSHLEDQKVTFAEASAKTG-EIDQWESWIREAL 238 (238)
T ss_pred ccccccccccccchhhcccceeEEeecccCcC-ChHHHHHHHHHhC
Confidence 0 01112467889999999 7999999998753
|
|
| >cd01899 Ygr210 Ygr210 subfamily | Back alignment and domain information |
|---|
Probab=99.75 E-value=2.1e-16 Score=115.73 Aligned_cols=155 Identities=23% Similarity=0.273 Sum_probs=95.2
Q ss_pred EEEEcCCCCCHHHHHHHHhcCCCCCCC--CCccceeEEEEE------------------------eCCEEEEEEecCCc-
Q 030429 15 LSLIGLQNAGKTSLVNTIATGGYSEDM--IPTVGFNMRKVT------------------------KGNVTIKLWDLGGQ- 67 (177)
Q Consensus 15 i~i~G~~~~GKSsli~~l~~~~~~~~~--~~t~~~~~~~~~------------------------~~~~~~~~~D~~g~- 67 (177)
|+++|.|+||||||++++++....... ..|...+..... ...+.+++||+||.
T Consensus 1 i~ivG~pnvGKStLfn~lt~~~~~~~~~pftT~~p~~g~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~v~i~l~D~aGlv 80 (318)
T cd01899 1 IGLVGKPNAGKSTFFNAATLADVEIANYPFTTIDPNVGVGYVRVECPCKELGVSCNPRYGKCIDGKRYVPVELIDVAGLV 80 (318)
T ss_pred CEEECCCCCCHHHHHHHHhCCCCcccCCCCccccceeEEEEEecCCCchhhhhhhcccccccccCcCcceEEEEECCCCC
Confidence 589999999999999999977643211 122222222111 13368999999996
Q ss_pred ---hhhHHhHHH---HhcCCCEEEEEEeCCCC-------------CCHHHH---HHHHH---------------------
Q 030429 68 ---RRFRTMWER---YCRGVSAILYVVDAADR-------------DSVPIA---RSELH--------------------- 104 (177)
Q Consensus 68 ---~~~~~~~~~---~~~~~d~~i~v~d~~~~-------------~~~~~~---~~~~~--------------------- 104 (177)
.++..+... .++++|++++|+|++.. +....+ ...+.
T Consensus 81 ~ga~~~~glg~~fL~~ir~aD~ii~Vvd~~~~~d~~~~~~~~~~~dp~~d~~~i~~El~~~d~~~~~~~~~~~~~~~~~~ 160 (318)
T cd01899 81 PGAHEGKGLGNKFLDDLRDADALIHVVDASGGTDAEGNGVETGGHDPLEDIEFLENEIDMWIYGILEKNWEKIVRKADAE 160 (318)
T ss_pred CCccchhhHHHHHHHHHHHCCEEEEEEeCCCCcccccccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 344443333 58899999999999731 111111 00000
Q ss_pred -----------------------HHHcCC---------------------CCCCCcEEEEeeCCCcccccCHHHHHHHhC
Q 030429 105 -----------------------ELLMKP---------------------SLSGIPLLVLGNKIDKSEALSKQALVDQLG 140 (177)
Q Consensus 105 -----------------------~~~~~~---------------------~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~ 140 (177)
.++... ....+|+++|+||+|+..... ..+.+.
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~v~~~L~~~~~~~~~~~~~~~~~~~~~~~~llt~KPvI~VlNK~Dl~~~~~---~~~~l~ 237 (318)
T cd01899 161 KTDIVEALSEQLSGFGVNEKDVIEALEELELPEDLSKWTDEDLLRLARALRKRSKPMVIAANKADIPDAEN---NISKLR 237 (318)
T ss_pred CccHHHHHHHHHhhccccHHHHHHHHHhCCCCCcccCCCHHHHHHHHHHHHhcCCcEEEEEEHHHccChHH---HHHHHH
Confidence 000000 013579999999999854322 222222
Q ss_pred cccccCCceeEEEeeecCCCChHHHHH-HHHHHhhh
Q 030429 141 LESITDREVCCYMISCKDSINIDAVID-WLIKHSKT 175 (177)
Q Consensus 141 ~~~~~~~~~~~~~~Sa~~~~~i~~l~~-~l~~~~~~ 175 (177)
. ......++++||+.+.+++++.+ .+.+.+.+
T Consensus 238 ~---~~~~~~iI~iSA~~e~~L~~L~~~~i~~~lPe 270 (318)
T cd01899 238 L---KYPDEIVVPTSAEAELALRRAAKQGLIKYDPG 270 (318)
T ss_pred h---hCCCCeEEEEeCcccccHHHHHHhhHHHhCCC
Confidence 1 11234799999999999999998 68888754
|
Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi. |
| >PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ] | Back alignment and domain information |
|---|
Probab=99.74 E-value=4.7e-18 Score=114.05 Aligned_cols=119 Identities=22% Similarity=0.316 Sum_probs=72.4
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEe---CCEEEEEEecCCchhhHHhHHH---HhcCCCEEE
Q 030429 12 EMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTK---GNVTIKLWDLGGQRRFRTMWER---YCRGVSAIL 85 (177)
Q Consensus 12 ~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~---~~~~~~~~D~~g~~~~~~~~~~---~~~~~d~~i 85 (177)
.-.|+++|++|+|||+|..+|..+...+...+. .... .... .+..+.++|+||+.+.+..... +...+.++|
T Consensus 3 ~~~vlL~Gps~SGKTaLf~~L~~~~~~~T~tS~-e~n~-~~~~~~~~~~~~~lvD~PGH~rlr~~~~~~~~~~~~~k~II 80 (181)
T PF09439_consen 3 RPTVLLVGPSGSGKTALFSQLVNGKTVPTVTSM-ENNI-AYNVNNSKGKKLRLVDIPGHPRLRSKLLDELKYLSNAKGII 80 (181)
T ss_dssp --EEEEE-STTSSHHHHHHHHHHSS---B---S-SEEE-ECCGSSTCGTCECEEEETT-HCCCHHHHHHHHHHGGEEEEE
T ss_pred CceEEEEcCCCCCHHHHHHHHhcCCcCCeeccc-cCCc-eEEeecCCCCEEEEEECCCcHHHHHHHHHhhhchhhCCEEE
Confidence 457899999999999999999988554444443 2222 2222 4467889999999988765554 478899999
Q ss_pred EEEeCCC-CCCHHHHHHHHHHHHcC--CCCCCCcEEEEeeCCCcccccCH
Q 030429 86 YVVDAAD-RDSVPIARSELHELLMK--PSLSGIPLLVLGNKIDKSEALSK 132 (177)
Q Consensus 86 ~v~d~~~-~~~~~~~~~~~~~~~~~--~~~~~~~~iiv~nK~D~~~~~~~ 132 (177)
+|+|++. +....+....+-.++.. .....+|++++.||.|+......
T Consensus 81 fvvDSs~~~~~~~~~Ae~Ly~iL~~~~~~~~~~piLIacNK~Dl~~A~~~ 130 (181)
T PF09439_consen 81 FVVDSSTDQKELRDVAEYLYDILSDTEVQKNKPPILIACNKQDLFTAKPP 130 (181)
T ss_dssp EEEETTTHHHHHHHHHHHHHHHHHHHHCCTT--EEEEEEE-TTSTT---H
T ss_pred EEEeCccchhhHHHHHHHHHHHHHhhhhccCCCCEEEEEeCccccccCCH
Confidence 9999874 22333333333333332 12356899999999998775443
|
SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B. |
| >KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.71 E-value=4.8e-16 Score=117.54 Aligned_cols=162 Identities=22% Similarity=0.257 Sum_probs=117.3
Q ss_pred ccccceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCC--CccceeEEEEE-eCCEEEEEEecCCchhhHHhHHHHhcCCCE
Q 030429 7 LFFKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMI--PTVGFNMRKVT-KGNVTIKLWDLGGQRRFRTMWERYCRGVSA 83 (177)
Q Consensus 7 ~~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~--~t~~~~~~~~~-~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ 83 (177)
+..+++.-|-+||....|||||+..|-+........ -|..+.-..+. .++-.+++.||||+.-|..+........|.
T Consensus 148 ~l~~RpPVVTiMGHVDHGKTTLLD~lRks~VAA~E~GGITQhIGAF~V~~p~G~~iTFLDTPGHaAF~aMRaRGA~vtDI 227 (683)
T KOG1145|consen 148 LLEPRPPVVTIMGHVDHGKTTLLDALRKSSVAAGEAGGITQHIGAFTVTLPSGKSITFLDTPGHAAFSAMRARGANVTDI 227 (683)
T ss_pred hcCCCCCeEEEeecccCChhhHHHHHhhCceehhhcCCccceeceEEEecCCCCEEEEecCCcHHHHHHHHhccCccccE
Confidence 344577789999999999999999997655433221 12222222222 256889999999999999988888889999
Q ss_pred EEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccCHHHHHHHhCccccc----CCceeEEEeeecCC
Q 030429 84 ILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESIT----DREVCCYMISCKDS 159 (177)
Q Consensus 84 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~Sa~~~ 159 (177)
+++|+.+.|.-.-+. .+.+.+....+.|+++++||+|.++. .+++..+++...... .....++++||++|
T Consensus 228 vVLVVAadDGVmpQT-----~EaIkhAk~A~VpiVvAinKiDkp~a-~pekv~~eL~~~gi~~E~~GGdVQvipiSAl~g 301 (683)
T KOG1145|consen 228 VVLVVAADDGVMPQT-----LEAIKHAKSANVPIVVAINKIDKPGA-NPEKVKRELLSQGIVVEDLGGDVQVIPISALTG 301 (683)
T ss_pred EEEEEEccCCccHhH-----HHHHHHHHhcCCCEEEEEeccCCCCC-CHHHHHHHHHHcCccHHHcCCceeEEEeecccC
Confidence 999999977543332 22334444468999999999998754 455555555433322 24578999999999
Q ss_pred CChHHHHHHHHHHhh
Q 030429 160 INIDAVIDWLIKHSK 174 (177)
Q Consensus 160 ~~i~~l~~~l~~~~~ 174 (177)
.|++.|.+.+.-.+.
T Consensus 302 ~nl~~L~eaill~Ae 316 (683)
T KOG1145|consen 302 ENLDLLEEAILLLAE 316 (683)
T ss_pred CChHHHHHHHHHHHH
Confidence 999999999876543
|
|
| >PRK09602 translation-associated GTPase; Reviewed | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.3e-15 Score=114.63 Aligned_cols=79 Identities=23% Similarity=0.324 Sum_probs=53.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCC-C-CCccceeEEEEE------------------------eCCEEEEEEecCC
Q 030429 13 MELSLIGLQNAGKTSLVNTIATGGYSED-M-IPTVGFNMRKVT------------------------KGNVTIKLWDLGG 66 (177)
Q Consensus 13 ~~i~i~G~~~~GKSsli~~l~~~~~~~~-~-~~t~~~~~~~~~------------------------~~~~~~~~~D~~g 66 (177)
++|+++|.|++|||||+|++++...... + ..|......... .....+++||+||
T Consensus 2 ~kigivG~pnvGKSTlfn~Lt~~~~~~~~y~f~t~~p~~g~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~~~i~i~D~aG 81 (396)
T PRK09602 2 ITIGLVGKPNVGKSTFFNAATLADVEIANYPFTTIDPNVGVAYVRVECPCKELGVKCNPRNGKCIDGTRFIPVELIDVAG 81 (396)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCcccccCCCCcceeeeeeeeeeccCCchhhhhhhhccccccccCCcceeeEEEEEcCC
Confidence 5899999999999999999997765432 1 123222222211 1236789999999
Q ss_pred c----hhhHHhHH---HHhcCCCEEEEEEeCC
Q 030429 67 Q----RRFRTMWE---RYCRGVSAILYVVDAA 91 (177)
Q Consensus 67 ~----~~~~~~~~---~~~~~~d~~i~v~d~~ 91 (177)
. ..+..+-. ..++.+|++++|+|+.
T Consensus 82 l~~ga~~g~glg~~fL~~ir~ad~ll~Vvd~~ 113 (396)
T PRK09602 82 LVPGAHEGRGLGNQFLDDLRQADALIHVVDAS 113 (396)
T ss_pred cCCCccchhhHHHHHHHHHHHCCEEEEEEeCC
Confidence 4 22333222 3478899999999997
|
|
| >PRK12740 elongation factor G; Reviewed | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.2e-15 Score=122.53 Aligned_cols=106 Identities=22% Similarity=0.204 Sum_probs=78.2
Q ss_pred EcCCCCCHHHHHHHHhcCCC--------C------------CCCCCccceeEEEEEeCCEEEEEEecCCchhhHHhHHHH
Q 030429 18 IGLQNAGKTSLVNTIATGGY--------S------------EDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTMWERY 77 (177)
Q Consensus 18 ~G~~~~GKSsli~~l~~~~~--------~------------~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~ 77 (177)
+|++++|||||+++|+...- . .....|.+.....+..+++.+++|||||+.++...+..+
T Consensus 1 ig~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~i~liDtPG~~~~~~~~~~~ 80 (668)
T PRK12740 1 VGHSGAGKTTLTEAILFYTGAIHRIGEVEDGTTTMDFMPEERERGISITSAATTCEWKGHKINLIDTPGHVDFTGEVERA 80 (668)
T ss_pred CCCCCCcHHHHHHHHHHhcCCCccCccccCCcccCCCChHHHhcCCCeeeceEEEEECCEEEEEEECCCcHHHHHHHHHH
Confidence 59999999999999963211 0 012234445555677889999999999999888878888
Q ss_pred hcCCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccc
Q 030429 78 CRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSE 128 (177)
Q Consensus 78 ~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~ 128 (177)
+..+|++++|+|+++....... ..+..... .++|+++|+||+|...
T Consensus 81 l~~aD~vllvvd~~~~~~~~~~-~~~~~~~~----~~~p~iiv~NK~D~~~ 126 (668)
T PRK12740 81 LRVLDGAVVVVCAVGGVEPQTE-TVWRQAEK----YGVPRIIFVNKMDRAG 126 (668)
T ss_pred HHHhCeEEEEEeCCCCcCHHHH-HHHHHHHH----cCCCEEEEEECCCCCC
Confidence 9999999999999886544432 23333322 3689999999999864
|
|
| >COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.69 E-value=4e-16 Score=96.44 Aligned_cols=138 Identities=17% Similarity=0.157 Sum_probs=91.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEeCCEEEEEEecCC----chhhHHhHHHHhcCCCEEEEEEe
Q 030429 14 ELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGG----QRRFRTMWERYCRGVSAILYVVD 89 (177)
Q Consensus 14 ~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g----~~~~~~~~~~~~~~~d~~i~v~d 89 (177)
|+.++|..|||||||.+++-+...--...+ -+++++- -.+|||| +......+.....++|++++|-.
T Consensus 3 ri~~vG~~gcGKTtL~q~L~G~~~lykKTQ-------Ave~~d~--~~IDTPGEy~~~~~~Y~aL~tt~~dadvi~~v~~ 73 (148)
T COG4917 3 RIAFVGQVGCGKTTLFQSLYGNDTLYKKTQ-------AVEFNDK--GDIDTPGEYFEHPRWYHALITTLQDADVIIYVHA 73 (148)
T ss_pred eeEEecccccCchhHHHHhhcchhhhcccc-------eeeccCc--cccCCchhhhhhhHHHHHHHHHhhccceeeeeec
Confidence 789999999999999999974432221111 1222111 1349999 33333444455788999999999
Q ss_pred CCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccCHHHHHHHhCcccccCCceeEEEeeecCCCChHHHHHHH
Q 030429 90 AADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCKDSINIDAVIDWL 169 (177)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l 169 (177)
++++++.-.. . .......|+|-|++|+|+.+....+...+.+.... ..++|.+|+.++.|++++++.|
T Consensus 74 and~~s~f~p--~------f~~~~~k~vIgvVTK~DLaed~dI~~~~~~L~eaG----a~~IF~~s~~d~~gv~~l~~~L 141 (148)
T COG4917 74 ANDPESRFPP--G------FLDIGVKKVIGVVTKADLAEDADISLVKRWLREAG----AEPIFETSAVDNQGVEELVDYL 141 (148)
T ss_pred ccCccccCCc--c------cccccccceEEEEecccccchHhHHHHHHHHHHcC----CcceEEEeccCcccHHHHHHHH
Confidence 9998543210 0 11113457999999999998666554444443322 1269999999999999999998
Q ss_pred HHH
Q 030429 170 IKH 172 (177)
Q Consensus 170 ~~~ 172 (177)
...
T Consensus 142 ~~~ 144 (148)
T COG4917 142 ASL 144 (148)
T ss_pred Hhh
Confidence 764
|
|
| >PRK00007 elongation factor G; Reviewed | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.5e-15 Score=122.09 Aligned_cols=145 Identities=18% Similarity=0.140 Sum_probs=94.1
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHhc--CCC------C------------CCCCCccceeEEEEEeCCEEEEEEecCCch
Q 030429 9 FKQEMELSLIGLQNAGKTSLVNTIAT--GGY------S------------EDMIPTVGFNMRKVTKGNVTIKLWDLGGQR 68 (177)
Q Consensus 9 ~~~~~~i~i~G~~~~GKSsli~~l~~--~~~------~------------~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~ 68 (177)
.++-.+|+++|.+++|||||+++|+. +.. . .....|.......+..++..++++||||+.
T Consensus 7 ~~~Irni~iiG~~~~GKsTL~~~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rg~ti~~~~~~~~~~~~~~~liDTPG~~ 86 (693)
T PRK00007 7 LERYRNIGIMAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKDHRINIIDTPGHV 86 (693)
T ss_pred ccceeEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCcccCCCCHHHHhCCCCEeccEEEEEECCeEEEEEeCCCcH
Confidence 44567999999999999999999973 111 1 112224444445566788999999999999
Q ss_pred hhHHhHHHHhcCCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccCHHHHHHHhCcccccCCc
Q 030429 69 RFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDRE 148 (177)
Q Consensus 69 ~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~ 148 (177)
+|.......+..+|++++|+|+...-.... ...+..+.. .++|.++++||+|+.+.. ..+..+.+.........
T Consensus 87 ~f~~ev~~al~~~D~~vlVvda~~g~~~qt-~~~~~~~~~----~~~p~iv~vNK~D~~~~~-~~~~~~~i~~~l~~~~~ 160 (693)
T PRK00007 87 DFTIEVERSLRVLDGAVAVFDAVGGVEPQS-ETVWRQADK----YKVPRIAFVNKMDRTGAD-FYRVVEQIKDRLGANPV 160 (693)
T ss_pred HHHHHHHHHHHHcCEEEEEEECCCCcchhh-HHHHHHHHH----cCCCEEEEEECCCCCCCC-HHHHHHHHHHHhCCCee
Confidence 888777778899999999999876532222 223333322 368999999999998643 33333333221111122
Q ss_pred eeEEEeeecCC
Q 030429 149 VCCYMISCKDS 159 (177)
Q Consensus 149 ~~~~~~Sa~~~ 159 (177)
...+++|+..+
T Consensus 161 ~~~ipisa~~~ 171 (693)
T PRK00007 161 PIQLPIGAEDD 171 (693)
T ss_pred eEEecCccCCc
Confidence 23455565544
|
|
| >PRK09866 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.69 E-value=3.1e-15 Score=116.15 Aligned_cols=113 Identities=19% Similarity=0.190 Sum_probs=73.2
Q ss_pred EEEEEEecCCchh-----hHHhHHHHhcCCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccC
Q 030429 57 VTIKLWDLGGQRR-----FRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALS 131 (177)
Q Consensus 57 ~~~~~~D~~g~~~-----~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~ 131 (177)
.++.++||||... ....+...+..+|++++|+|++..-+..+ ..+...+.... ...|+++|+||+|..+...
T Consensus 230 ~QIIFVDTPGIhk~~~~~L~k~M~eqL~eADvVLFVVDat~~~s~~D--eeIlk~Lkk~~-K~~PVILVVNKIDl~dree 306 (741)
T PRK09866 230 GQLTLLDTPGPNEAGQPHLQKMLNQQLARASAVLAVLDYTQLKSISD--EEVREAILAVG-QSVPLYVLVNKFDQQDRNS 306 (741)
T ss_pred CCEEEEECCCCCCccchHHHHHHHHHHhhCCEEEEEEeCCCCCChhH--HHHHHHHHhcC-CCCCEEEEEEcccCCCccc
Confidence 5678899999543 22234457899999999999976433332 22333333211 1359999999999864322
Q ss_pred --HHHHHHHhCcc--cccCCceeEEEeeecCCCChHHHHHHHHHH
Q 030429 132 --KQALVDQLGLE--SITDREVCCYMISCKDSINIDAVIDWLIKH 172 (177)
Q Consensus 132 --~~~~~~~~~~~--~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~ 172 (177)
.+.+.+..... ........++++||+.|.|++++++.|...
T Consensus 307 ddkE~Lle~V~~~L~q~~i~f~eIfPVSAlkG~nid~LLdeI~~~ 351 (741)
T PRK09866 307 DDADQVRALISGTLMKGCITPQQIFPVSSMWGYLANRARHELANN 351 (741)
T ss_pred chHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHHHhC
Confidence 33443432211 112234579999999999999999999873
|
|
| >KOG0082 consensus G-protein alpha subunit (small G protein superfamily) [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.5e-15 Score=110.96 Aligned_cols=135 Identities=18% Similarity=0.294 Sum_probs=104.9
Q ss_pred CCCccceeEEEEEeCCEEEEEEecCCchhhHHhHHHHhcCCCEEEEEEeCCCCC----------CHHHHHHHHHHHHcCC
Q 030429 41 MIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAADRD----------SVPIARSELHELLMKP 110 (177)
Q Consensus 41 ~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~----------~~~~~~~~~~~~~~~~ 110 (177)
..+|.|+....++.++..+.++|+|||+.-+..|...+.+++++++|+++|+.+ .+.+....+..++...
T Consensus 179 R~~T~GI~e~~F~~k~~~f~~~DvGGQRseRrKWihcFe~v~aviF~vslSeYdq~l~ED~~~NRM~eS~~LF~sI~n~~ 258 (354)
T KOG0082|consen 179 RVPTTGIVEVEFTIKGLKFRMFDVGGQRSERKKWIHCFEDVTAVIFCVSLSEYDQVLEEDETTNRMHESLKLFESICNNK 258 (354)
T ss_pred ccCcCCeeEEEEEeCCCceEEEeCCCcHHHhhhHHHhhcCCCEEEEEEehhhhhhhcccccchhHHHHHHHHHHHHhcCc
Confidence 456888999999999999999999999999999999999999999999998633 2445677788888887
Q ss_pred CCCCCcEEEEeeCCCccccc-----------------CHHHHHHHhCc-----ccccCCceeEEEeeecCCCChHHHHHH
Q 030429 111 SLSGIPLLVLGNKIDKSEAL-----------------SKQALVDQLGL-----ESITDREVCCYMISCKDSINIDAVIDW 168 (177)
Q Consensus 111 ~~~~~~~iiv~nK~D~~~~~-----------------~~~~~~~~~~~-----~~~~~~~~~~~~~Sa~~~~~i~~l~~~ 168 (177)
-..+.++|+++||.|+.++. ..++....+.. .....+.+-++.++|.+-.+|+.+|..
T Consensus 259 ~F~~tsiiLFLNK~DLFeEKi~~~~~~~~Fpdy~G~~~~~~a~~yI~~kF~~l~~~~~k~iy~h~T~AtDT~nv~~vf~a 338 (354)
T KOG0082|consen 259 WFANTSIILFLNKKDLFEEKIKKVPLTDCFPDYKGVNTYEEAAKYIRKKFEELNKNKDKKIYVHFTCATDTQNVQFVFDA 338 (354)
T ss_pred ccccCcEEEEeecHHHHHHHhccCchhhhCcCCCCCCChHHHHHHHHHHHHHHhcccCCcceEEEEeeccHHHHHHHHHH
Confidence 88889999999999986531 11222222211 111124556678899999999999999
Q ss_pred HHHHhhh
Q 030429 169 LIKHSKT 175 (177)
Q Consensus 169 l~~~~~~ 175 (177)
+.+.+..
T Consensus 339 v~d~Ii~ 345 (354)
T KOG0082|consen 339 VTDTIIQ 345 (354)
T ss_pred HHHHHHH
Confidence 9988764
|
|
| >COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.68 E-value=5.2e-16 Score=115.70 Aligned_cols=156 Identities=21% Similarity=0.253 Sum_probs=110.7
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHhcCC-----------------CCCCCCCccceeEEEEE-----eCCEEEEEEecCC
Q 030429 9 FKQEMELSLIGLQNAGKTSLVNTIATGG-----------------YSEDMIPTVGFNMRKVT-----KGNVTIKLWDLGG 66 (177)
Q Consensus 9 ~~~~~~i~i~G~~~~GKSsli~~l~~~~-----------------~~~~~~~t~~~~~~~~~-----~~~~~~~~~D~~g 66 (177)
.++--|..++-+-..|||||..|+++.. ..+..+-|+..+...+. .+.+.++++||||
T Consensus 6 ~~~IRNFsIIAHIDHGKSTLaDRlle~t~~~~~Rem~~Q~LDsMdiERERGITIKaq~v~l~Yk~~~g~~Y~lnlIDTPG 85 (603)
T COG0481 6 QKNIRNFSIIAHIDHGKSTLADRLLELTGGLSEREMRAQVLDSMDIERERGITIKAQAVRLNYKAKDGETYVLNLIDTPG 85 (603)
T ss_pred hhhccceEEEEEecCCcchHHHHHHHHhcCcChHHHHHHhhhhhhhHhhcCceEEeeEEEEEEEeCCCCEEEEEEcCCCC
Confidence 3445678899999999999999998321 22233334443333322 2559999999999
Q ss_pred chhhHHhHHHHhcCCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccC---HHHHHHHhCccc
Q 030429 67 QRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALS---KQALVDQLGLES 143 (177)
Q Consensus 67 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~---~~~~~~~~~~~~ 143 (177)
|-+|.-.....+..|.++++|+|++..-.-+.+...+..+ + .+.-++-|+||+|++.... .+++.+.++...
T Consensus 86 HVDFsYEVSRSLAACEGalLvVDAsQGveAQTlAN~YlAl-e----~~LeIiPViNKIDLP~Adpervk~eIe~~iGid~ 160 (603)
T COG0481 86 HVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLAL-E----NNLEIIPVLNKIDLPAADPERVKQEIEDIIGIDA 160 (603)
T ss_pred ccceEEEehhhHhhCCCcEEEEECccchHHHHHHHHHHHH-H----cCcEEEEeeecccCCCCCHHHHHHHHHHHhCCCc
Confidence 9999877777788899999999998864444444444443 2 2577899999999987532 233444444322
Q ss_pred ccCCceeEEEeeecCCCChHHHHHHHHHHhh
Q 030429 144 ITDREVCCYMISCKDSINIDAVIDWLIKHSK 174 (177)
Q Consensus 144 ~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~ 174 (177)
-..+.+||++|.||+++++.|++.+.
T Consensus 161 -----~dav~~SAKtG~gI~~iLe~Iv~~iP 186 (603)
T COG0481 161 -----SDAVLVSAKTGIGIEDVLEAIVEKIP 186 (603)
T ss_pred -----chheeEecccCCCHHHHHHHHHhhCC
Confidence 25789999999999999999999875
|
|
| >cd01850 CDC_Septin CDC/Septin | Back alignment and domain information |
|---|
Probab=99.67 E-value=3.3e-15 Score=107.86 Aligned_cols=113 Identities=17% Similarity=0.259 Sum_probs=70.4
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCCCC----------CCCccceeEEE--EEeCC--EEEEEEecCCchhh-------
Q 030429 12 EMELSLIGLQNAGKTSLVNTIATGGYSED----------MIPTVGFNMRK--VTKGN--VTIKLWDLGGQRRF------- 70 (177)
Q Consensus 12 ~~~i~i~G~~~~GKSsli~~l~~~~~~~~----------~~~t~~~~~~~--~~~~~--~~~~~~D~~g~~~~------- 70 (177)
.++|+++|++|+|||||+|++++..+... ..+|....... +..++ +.+.+|||||...+
T Consensus 4 ~f~I~vvG~sg~GKSTliN~L~~~~~~~~~~~~~~~~~~~~~T~~i~~~~~~i~~~g~~~~l~iiDTpGfgd~~~~~~~~ 83 (276)
T cd01850 4 QFNIMVVGESGLGKSTFINTLFNTKLIPSDYPPDPAEEHIDKTVEIKSSKAEIEENGVKLKLTVIDTPGFGDNINNSDCW 83 (276)
T ss_pred EEEEEEEcCCCCCHHHHHHHHHcCCCccccCCCCccccccCCceEEEEEEEEEEECCEEEEEEEEecCCccccccchhhH
Confidence 58999999999999999999998765433 23343333332 33344 67999999993221
Q ss_pred -----------HHhHH--------HHhc--CCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccc
Q 030429 71 -----------RTMWE--------RYCR--GVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEA 129 (177)
Q Consensus 71 -----------~~~~~--------~~~~--~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~ 129 (177)
..... ..+. .+|+++++++.+.....+.-...+..+ .. .+|+++|+||+|+...
T Consensus 84 ~~i~~yi~~q~~~~l~~e~~~~r~~~~~d~rvh~~ly~i~~~~~~l~~~D~~~lk~l-~~----~v~vi~VinK~D~l~~ 158 (276)
T cd01850 84 KPIVDYIDDQFDQYLREESRIKRNPRIPDTRVHACLYFIEPTGHGLKPLDIEFMKRL-SK----RVNIIPVIAKADTLTP 158 (276)
T ss_pred HHHHHHHHHHHHHHHHHHhhhcccccCCCCceEEEEEEEeCCCCCCCHHHHHHHHHH-hc----cCCEEEEEECCCcCCH
Confidence 11000 1122 367888888876532212213333333 22 5899999999999664
|
Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities. |
| >PRK13768 GTPase; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=2.3e-15 Score=107.51 Aligned_cols=117 Identities=19% Similarity=0.118 Sum_probs=73.7
Q ss_pred EEEEEEecCCchhhH---HhHHH---HhcC--CCEEEEEEeCCCCCCHHHH-HHHHHHHHcCCCCCCCcEEEEeeCCCcc
Q 030429 57 VTIKLWDLGGQRRFR---TMWER---YCRG--VSAILYVVDAADRDSVPIA-RSELHELLMKPSLSGIPLLVLGNKIDKS 127 (177)
Q Consensus 57 ~~~~~~D~~g~~~~~---~~~~~---~~~~--~d~~i~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~iiv~nK~D~~ 127 (177)
.++.+||+||+.... ..+.. ++.. .+++++|+|++........ ..++........ .++|+++|+||+|+.
T Consensus 97 ~~~~~~d~~g~~~~~~~~~~~~~~~~~l~~~~~~~ii~liD~~~~~~~~d~~~~~~l~~~~~~~-~~~~~i~v~nK~D~~ 175 (253)
T PRK13768 97 ADYVLVDTPGQMELFAFRESGRKLVERLSGSSKSVVVFLIDAVLAKTPSDFVSLLLLALSVQLR-LGLPQIPVLNKADLL 175 (253)
T ss_pred CCEEEEeCCcHHHHHhhhHHHHHHHHHHHhcCCeEEEEEechHHhCCHHHHHHHHHHHHHHHHH-cCCCEEEEEEhHhhc
Confidence 368999999976543 22222 2333 8999999999764433332 222222111111 368999999999998
Q ss_pred cccCHHHHHHHhCc----------c---------------cccCCceeEEEeeecCCCChHHHHHHHHHHhh
Q 030429 128 EALSKQALVDQLGL----------E---------------SITDREVCCYMISCKDSINIDAVIDWLIKHSK 174 (177)
Q Consensus 128 ~~~~~~~~~~~~~~----------~---------------~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~ 174 (177)
+..+.++..+.+.. . .......+++++|++++.|+++++++|.+.+.
T Consensus 176 ~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~vi~iSa~~~~gl~~L~~~I~~~l~ 247 (253)
T PRK13768 176 SEEELERILKWLEDPEYLLEELKLEKGLQGLLSLELLRALEETGLPVRVIPVSAKTGEGFDELYAAIQEVFC 247 (253)
T ss_pred CchhHHHHHHHHhCHHHHHHHHhcccchHHHHHHHHHHHHHHHCCCCcEEEEECCCCcCHHHHHHHHHHHcC
Confidence 76555444443321 0 00012347899999999999999999988763
|
|
| >COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.9e-15 Score=107.79 Aligned_cols=162 Identities=19% Similarity=0.194 Sum_probs=114.1
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcCCCCC-------------------------CCCCccceeEEE-EEeC------CE
Q 030429 10 KQEMELSLIGLQNAGKTSLVNTIATGGYSE-------------------------DMIPTVGFNMRK-VTKG------NV 57 (177)
Q Consensus 10 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~-------------------------~~~~t~~~~~~~-~~~~------~~ 57 (177)
...++|..+|....|||||..++.+--..+ .+.+ ....... .... -.
T Consensus 8 Qp~vNIG~vGHVdHGKtTlv~AlsGvwT~~hseElkRgitIkLGYAd~~i~kC~~c~~~-~~y~~~~~C~~cg~~~~l~R 86 (415)
T COG5257 8 QPEVNIGMVGHVDHGKTTLTKALSGVWTDRHSEELKRGITIKLGYADAKIYKCPECYRP-ECYTTEPKCPNCGAETELVR 86 (415)
T ss_pred CcceEeeeeeecccchhhheehhhceeeechhHHHhcCcEEEeccccCceEeCCCCCCC-cccccCCCCCCCCCCccEEE
Confidence 457999999999999999999998421100 0100 0000000 0001 14
Q ss_pred EEEEEecCCchhhHHhHHHHhcCCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccCHHHHHH
Q 030429 58 TIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVD 137 (177)
Q Consensus 58 ~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~ 137 (177)
.+.++|.||++-....+-....-.|++++|++++.++.-+.....+..+-.. .-..++++.||+|+...+...+-.+
T Consensus 87 ~VSfVDaPGHe~LMATMLsGAAlMDgAlLvIaANEpcPQPQT~EHl~AleIi---gik~iiIvQNKIDlV~~E~AlE~y~ 163 (415)
T COG5257 87 RVSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTREHLMALEII---GIKNIIIVQNKIDLVSRERALENYE 163 (415)
T ss_pred EEEEeeCCchHHHHHHHhcchhhhcceEEEEecCCCCCCCchHHHHHHHhhh---ccceEEEEecccceecHHHHHHHHH
Confidence 6889999999988776666666689999999999998888777777766333 3467899999999988755433333
Q ss_pred HhCc--ccccCCceeEEEeeecCCCChHHHHHHHHHHhhh
Q 030429 138 QLGL--ESITDREVCCYMISCKDSINIDAVIDWLIKHSKT 175 (177)
Q Consensus 138 ~~~~--~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~ 175 (177)
+... ......+.|++++||..+.||+.|+++|.+.+..
T Consensus 164 qIk~FvkGt~Ae~aPIIPiSA~~~~NIDal~e~i~~~Ipt 203 (415)
T COG5257 164 QIKEFVKGTVAENAPIIPISAQHKANIDALIEAIEKYIPT 203 (415)
T ss_pred HHHHHhcccccCCCceeeehhhhccCHHHHHHHHHHhCCC
Confidence 3321 2233567899999999999999999999998753
|
|
| >PRK09435 membrane ATPase/protein kinase; Provisional | Back alignment and domain information |
|---|
Probab=99.64 E-value=2e-15 Score=110.79 Aligned_cols=108 Identities=14% Similarity=0.048 Sum_probs=68.0
Q ss_pred CCEEEEEEecCCchhhHHhHHHHhcCCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccCHH-
Q 030429 55 GNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQ- 133 (177)
Q Consensus 55 ~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~- 133 (177)
.++.+.++||+|..+.... ....+|.++++.+... .+.+.......++. .-++|+||+|+.+.....
T Consensus 147 ~g~d~viieT~Gv~qs~~~---i~~~aD~vlvv~~p~~---gd~iq~~k~gi~E~------aDIiVVNKaDl~~~~~a~~ 214 (332)
T PRK09435 147 AGYDVILVETVGVGQSETA---VAGMVDFFLLLQLPGA---GDELQGIKKGIMEL------ADLIVINKADGDNKTAARR 214 (332)
T ss_pred cCCCEEEEECCCCccchhH---HHHhCCEEEEEecCCc---hHHHHHHHhhhhhh------hheEEeehhcccchhHHHH
Confidence 3578999999997644433 3556999999976333 33333322222222 238999999987654332
Q ss_pred ---HHHHHhCccccc--CCceeEEEeeecCCCChHHHHHHHHHHhh
Q 030429 134 ---ALVDQLGLESIT--DREVCCYMISCKDSINIDAVIDWLIKHSK 174 (177)
Q Consensus 134 ---~~~~~~~~~~~~--~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~ 174 (177)
++.+.+...... ....+++.+||+++.|+++|++.|.+.+.
T Consensus 215 ~~~el~~~L~l~~~~~~~w~~pVi~vSA~~g~GIdeL~~~I~~~~~ 260 (332)
T PRK09435 215 AAAEYRSALRLLRPKDPGWQPPVLTCSALEGEGIDEIWQAIEDHRA 260 (332)
T ss_pred HHHHHHHHHhcccccccCCCCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 233333221111 11147999999999999999999998653
|
|
| >cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts) | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.9e-14 Score=102.23 Aligned_cols=122 Identities=15% Similarity=0.085 Sum_probs=75.8
Q ss_pred cccceeEEEEEcCCCCCHHHHHHHHhcCCCCCC---CCCccceeEEEEEeCCEEEEEEecCCchhhH-----H-----hH
Q 030429 8 FFKQEMELSLIGLQNAGKTSLVNTIATGGYSED---MIPTVGFNMRKVTKGNVTIKLWDLGGQRRFR-----T-----MW 74 (177)
Q Consensus 8 ~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~---~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~-----~-----~~ 74 (177)
.....++|+++|.+|+|||||+|++++...... ...|..........++..+.+|||||-.... . ..
T Consensus 27 ~~~~~~~IllvG~tGvGKSSliNaLlg~~~~~v~~~~~~T~~~~~~~~~~~g~~i~vIDTPGl~~~~~~~~~~~~~~~~I 106 (249)
T cd01853 27 ELDFSLTILVLGKTGVGKSSTINSIFGERKAATSAFQSETLRVREVSGTVDGFKLNIIDTPGLLESVMDQRVNRKILSSI 106 (249)
T ss_pred hccCCeEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECCeEEEEEECCCcCcchhhHHHHHHHHHHH
Confidence 345679999999999999999999997654222 1234444444555678899999999954331 0 11
Q ss_pred HHHhc--CCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCC-CCCcEEEEeeCCCcccc
Q 030429 75 ERYCR--GVSAILYVVDAADRDSVPIARSELHELLMKPSL-SGIPLLVLGNKIDKSEA 129 (177)
Q Consensus 75 ~~~~~--~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~-~~~~~iiv~nK~D~~~~ 129 (177)
..++. ..|++++|..++....-......+..+...... --.++++|.||+|...+
T Consensus 107 ~~~l~~~~idvIL~V~rlD~~r~~~~d~~llk~I~e~fG~~i~~~~ivV~T~~d~~~p 164 (249)
T cd01853 107 KRYLKKKTPDVVLYVDRLDMYRRDYLDLPLLRAITDSFGPSIWRNAIVVLTHAASSPP 164 (249)
T ss_pred HHHHhccCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhChhhHhCEEEEEeCCccCCC
Confidence 22332 578888887775443222222333333222211 12579999999998653
|
This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon. |
| >cd01882 BMS1 Bms1 | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.4e-14 Score=101.86 Aligned_cols=143 Identities=13% Similarity=0.114 Sum_probs=86.4
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEeCCEEEEEEecCCchhhHHhHHHHhcCCCEEEEEE
Q 030429 9 FKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVV 88 (177)
Q Consensus 9 ~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~ 88 (177)
...+..|+++|.+|+|||||++.+.+...........+. .......+.++.++||||.. .. ....++.+|++++|+
T Consensus 36 ~~~~~~i~ivG~~~~GKstl~~~l~~~~~~~~~~~~~g~-i~i~~~~~~~i~~vDtPg~~--~~-~l~~ak~aDvVllvi 111 (225)
T cd01882 36 EPPPLVVAVVGPPGVGKTTLIKSLVKNYTKQNISDIKGP-ITVVTGKKRRLTFIECPNDI--NA-MIDIAKVADLVLLLI 111 (225)
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHhhcccCcccccccc-EEEEecCCceEEEEeCCchH--HH-HHHHHHhcCEEEEEE
Confidence 355678999999999999999999854222111111221 11233467788999999864 22 234467899999999
Q ss_pred eCCCCCCHHHHHHHHHHHHcCCCCCCCcE-EEEeeCCCcccccC-HHHHHHHhCcccc--cCCceeEEEeeecCCC
Q 030429 89 DAADRDSVPIARSELHELLMKPSLSGIPL-LVLGNKIDKSEALS-KQALVDQLGLESI--TDREVCCYMISCKDSI 160 (177)
Q Consensus 89 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~-iiv~nK~D~~~~~~-~~~~~~~~~~~~~--~~~~~~~~~~Sa~~~~ 160 (177)
|++....... ..+...... .+.|. ++|+||+|+.+... .++..+.+..... ...+.+++++||+++.
T Consensus 112 Da~~~~~~~~--~~i~~~l~~---~g~p~vi~VvnK~D~~~~~~~~~~~~~~l~~~~~~~~~~~~ki~~iSa~~~~ 182 (225)
T cd01882 112 DASFGFEMET--FEFLNILQV---HGFPRVMGVLTHLDLFKKNKTLRKTKKRLKHRFWTEVYQGAKLFYLSGIVHG 182 (225)
T ss_pred ecCcCCCHHH--HHHHHHHHH---cCCCeEEEEEeccccCCcHHHHHHHHHHHHHHHHHhhCCCCcEEEEeeccCC
Confidence 9976433222 222333222 24664 55999999974322 2333333322111 2245689999998873
|
Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes. |
| >KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.8e-15 Score=105.88 Aligned_cols=119 Identities=18% Similarity=0.093 Sum_probs=71.2
Q ss_pred EEEEEEecCCchhhHH------hHHHHh--cCCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccc
Q 030429 57 VTIKLWDLGGQRRFRT------MWERYC--RGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSE 128 (177)
Q Consensus 57 ~~~~~~D~~g~~~~~~------~~~~~~--~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~ 128 (177)
.+..++|||||-.... .+...+ ...-++++|+|.....+...........+......+.|+|+|.||+|+.+
T Consensus 116 ~~~~liDTPGQIE~FtWSAsGsIIte~lass~ptvv~YvvDt~rs~~p~tFMSNMlYAcSilyktklp~ivvfNK~Dv~d 195 (366)
T KOG1532|consen 116 FDYVLIDTPGQIEAFTWSASGSIITETLASSFPTVVVYVVDTPRSTSPTTFMSNMLYACSILYKTKLPFIVVFNKTDVSD 195 (366)
T ss_pred cCEEEEcCCCceEEEEecCCccchHhhHhhcCCeEEEEEecCCcCCCchhHHHHHHHHHHHHHhccCCeEEEEecccccc
Confidence 4688999999743211 111112 23568888998744332222222222222222235789999999999987
Q ss_pred ccCHHH-------HHHHhCc--cc--------------ccCCceeEEEeeecCCCChHHHHHHHHHHhhh
Q 030429 129 ALSKQA-------LVDQLGL--ES--------------ITDREVCCYMISCKDSINIDAVIDWLIKHSKT 175 (177)
Q Consensus 129 ~~~~~~-------~~~~~~~--~~--------------~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~ 175 (177)
.....+ +.+.++. .. ....+...+.+|+.+|.|.+++|..+.+.+.+
T Consensus 196 ~~fa~eWm~DfE~FqeAl~~~~~~y~s~l~~SmSL~leeFY~~lrtv~VSs~tG~G~ddf~~av~~~vdE 265 (366)
T KOG1532|consen 196 SEFALEWMTDFEAFQEALNEAESSYMSNLTRSMSLMLEEFYRSLRTVGVSSVTGEGFDDFFTAVDESVDE 265 (366)
T ss_pred cHHHHHHHHHHHHHHHHHHhhccchhHHhhhhHHHHHHHHHhhCceEEEecccCCcHHHHHHHHHHHHHH
Confidence 644322 2222221 00 01235678999999999999999999887754
|
|
| >PRK14845 translation initiation factor IF-2; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=2e-14 Score=118.26 Aligned_cols=146 Identities=17% Similarity=0.151 Sum_probs=91.5
Q ss_pred CCHHHHHHHHhcCCCCCCCC--CccceeEEEEEeC------------------CEEEEEEecCCchhhHHhHHHHhcCCC
Q 030429 23 AGKTSLVNTIATGGYSEDMI--PTVGFNMRKVTKG------------------NVTIKLWDLGGQRRFRTMWERYCRGVS 82 (177)
Q Consensus 23 ~GKSsli~~l~~~~~~~~~~--~t~~~~~~~~~~~------------------~~~~~~~D~~g~~~~~~~~~~~~~~~d 82 (177)
++||||+.++.+........ -|..+....+..+ ...+.+|||||++.|..+....+..+|
T Consensus 472 ~~KTtLLD~iR~t~v~~~EaGGITQ~IGa~~v~~~~~~~~~~~~~~~~~~~~~~p~i~fiDTPGhe~F~~lr~~g~~~aD 551 (1049)
T PRK14845 472 VHNTTLLDKIRKTRVAKKEAGGITQHIGATEIPIDVIKKICGPLLKLLKAEIKIPGLLFIDTPGHEAFTSLRKRGGSLAD 551 (1049)
T ss_pred cccccHHHHHhCCCcccccCCCceeccceEEEEecccccccccccccccccCCcCcEEEEECCCcHHHHHHHHhhcccCC
Confidence 34999999998766543321 1222222222211 113899999999999888777788899
Q ss_pred EEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccC--------------HHHHHHH----------
Q 030429 83 AILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALS--------------KQALVDQ---------- 138 (177)
Q Consensus 83 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~--------------~~~~~~~---------- 138 (177)
++++|+|+++.-.-.. ...+. .+.. .++|+++|+||+|+.+... .++..+.
T Consensus 552 ivlLVVDa~~Gi~~qT-~e~I~-~lk~---~~iPiIVViNKiDL~~~~~~~~~~~~~~~~~~q~~~~~~el~~~l~~v~~ 626 (1049)
T PRK14845 552 LAVLVVDINEGFKPQT-IEAIN-ILRQ---YKTPFVVAANKIDLIPGWNISEDEPFLLNFNEQDQHALTELEIKLYELIG 626 (1049)
T ss_pred EEEEEEECcccCCHhH-HHHHH-HHHH---cCCCEEEEEECCCCccccccccchhhhhhhhhhHHHHHHHHHHHHHHHhh
Confidence 9999999986422111 11222 2222 3689999999999864321 0111111
Q ss_pred -hCccc----------ccCCceeEEEeeecCCCChHHHHHHHHHHh
Q 030429 139 -LGLES----------ITDREVCCYMISCKDSINIDAVIDWLIKHS 173 (177)
Q Consensus 139 -~~~~~----------~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~ 173 (177)
+.... -.....+++++||++|.|+++|++.|....
T Consensus 627 ~L~~~G~~~e~~~~~~d~~~~v~iVpVSA~tGeGId~Ll~~l~~l~ 672 (1049)
T PRK14845 627 KLYELGFDADRFDRVQDFTRTVAIVPVSAKTGEGIPELLMMVAGLA 672 (1049)
T ss_pred HHHhcCcchhhhhhhhhcCCCceEEEEEcCCCCCHHHHHHHHHHhh
Confidence 11111 013467999999999999999999886543
|
|
| >TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase) | Back alignment and domain information |
|---|
Probab=99.61 E-value=4.4e-14 Score=102.05 Aligned_cols=122 Identities=16% Similarity=0.098 Sum_probs=74.1
Q ss_pred ccccceeEEEEEcCCCCCHHHHHHHHhcCCCCC--CCCC-ccceeEEEEEeCCEEEEEEecCCchhhHHh-------HHH
Q 030429 7 LFFKQEMELSLIGLQNAGKTSLVNTIATGGYSE--DMIP-TVGFNMRKVTKGNVTIKLWDLGGQRRFRTM-------WER 76 (177)
Q Consensus 7 ~~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~--~~~~-t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~-------~~~ 76 (177)
-...+.++|+++|.+|+||||++|++++..... ...+ +..........++..+.+|||||..+.... ...
T Consensus 33 ~~~~~~~rIllvGktGVGKSSliNsIlG~~v~~vs~f~s~t~~~~~~~~~~~G~~l~VIDTPGL~d~~~~~e~~~~~ik~ 112 (313)
T TIGR00991 33 EEDVSSLTILVMGKGGVGKSSTVNSIIGERIATVSAFQSEGLRPMMVSRTRAGFTLNIIDTPGLIEGGYINDQAVNIIKR 112 (313)
T ss_pred cccccceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEECCeEEEEEECCCCCchHHHHHHHHHHHHH
Confidence 345678999999999999999999999765321 1111 122222334457889999999996543221 111
Q ss_pred Hh--cCCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCC-CCCCcEEEEeeCCCccc
Q 030429 77 YC--RGVSAILYVVDAADRDSVPIARSELHELLMKPS-LSGIPLLVLGNKIDKSE 128 (177)
Q Consensus 77 ~~--~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~~iiv~nK~D~~~ 128 (177)
++ ...|++++|..++.....+.....+..+...++ .--.+.++++|++|..+
T Consensus 113 ~l~~~g~DvVLyV~rLD~~R~~~~DkqlLk~Iqe~FG~~iw~~~IVVfTh~d~~~ 167 (313)
T TIGR00991 113 FLLGKTIDVLLYVDRLDAYRVDTLDGQVIRAITDSFGKDIWRKSLVVLTHAQFSP 167 (313)
T ss_pred HhhcCCCCEEEEEeccCcccCCHHHHHHHHHHHHHhhhhhhccEEEEEECCccCC
Confidence 12 258999999766533222222333333322221 11257899999999764
|
|
| >KOG1490 consensus GTP-binding protein CRFG/NOG1 (ODN superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.4e-15 Score=114.05 Aligned_cols=165 Identities=18% Similarity=0.122 Sum_probs=112.7
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHhcCCCCCC--CCCccceeEEEEEeCCEEEEEEecCCchhh----HH--hHH---HH
Q 030429 9 FKQEMELSLIGLQNAGKTSLVNTIATGGYSED--MIPTVGFNMRKVTKGNVTIKLWDLGGQRRF----RT--MWE---RY 77 (177)
Q Consensus 9 ~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~--~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~----~~--~~~---~~ 77 (177)
.++.-.++++|-|++|||||++.+........ ..+|.++-...+..+-..+++.||||..+- ++ .+. ..
T Consensus 165 Dp~trTlllcG~PNVGKSSf~~~vtradvevqpYaFTTksL~vGH~dykYlrwQViDTPGILD~plEdrN~IEmqsITAL 244 (620)
T KOG1490|consen 165 DPNTRTLLVCGYPNVGKSSFNNKVTRADDEVQPYAFTTKLLLVGHLDYKYLRWQVIDTPGILDRPEEDRNIIEMQIITAL 244 (620)
T ss_pred CCCcCeEEEecCCCCCcHhhcccccccccccCCcccccchhhhhhhhhheeeeeecCCccccCcchhhhhHHHHHHHHHH
Confidence 35567899999999999999999986654433 334555666667777889999999993221 11 111 11
Q ss_pred hcCCCEEEEEEeCCCCC--CHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccCHHHHHHHhCcccccCCceeEEEee
Q 030429 78 CRGVSAILYVVDAADRD--SVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMIS 155 (177)
Q Consensus 78 ~~~~d~~i~v~d~~~~~--~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 155 (177)
.+--.+|+|+.|+|..+ +.......+..+... +.+.|+|+|+||+|....+...+-.+.+-.......+++++.+|
T Consensus 245 AHLraaVLYfmDLSe~CGySva~QvkLfhsIKpL--FaNK~~IlvlNK~D~m~~edL~~~~~~ll~~~~~~~~v~v~~tS 322 (620)
T KOG1490|consen 245 AHLRSAVLYFMDLSEMCGYSVAAQVKLYHSIKPL--FANKVTILVLNKIDAMRPEDLDQKNQELLQTIIDDGNVKVVQTS 322 (620)
T ss_pred HHhhhhheeeeechhhhCCCHHHHHHHHHHhHHH--hcCCceEEEeecccccCccccCHHHHHHHHHHHhccCceEEEec
Confidence 22236899999998654 566666667766443 35899999999999977655433332222222333457899999
Q ss_pred ecCCCChHHHHHHHHHHhhh
Q 030429 156 CKDSINIDAVIDWLIKHSKT 175 (177)
Q Consensus 156 a~~~~~i~~l~~~l~~~~~~ 175 (177)
+.+.+|+-++.....+.+..
T Consensus 323 ~~~eegVm~Vrt~ACe~LLa 342 (620)
T KOG1490|consen 323 CVQEEGVMDVRTTACEALLA 342 (620)
T ss_pred ccchhceeeHHHHHHHHHHH
Confidence 99999999888777766554
|
|
| >KOG0458 consensus Elongation factor 1 alpha [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.61 E-value=5e-15 Score=112.73 Aligned_cols=159 Identities=19% Similarity=0.107 Sum_probs=110.2
Q ss_pred eecccccceeEEEEEcCCCCCHHHHHHHHhc---------------------------------CCCCCCCCCccceeEE
Q 030429 4 HISLFFKQEMELSLIGLQNAGKTSLVNTIAT---------------------------------GGYSEDMIPTVGFNMR 50 (177)
Q Consensus 4 ~~~~~~~~~~~i~i~G~~~~GKSsli~~l~~---------------------------------~~~~~~~~~t~~~~~~ 50 (177)
.....++..++.+++|...+|||||+.+++. ....+..+-|+.....
T Consensus 169 ~~q~~~k~~l~lvv~GhVdaGKSTLmG~lLydLg~i~~~~m~kl~~es~~~Gk~Sf~yawiLDeT~eERerGvTm~v~~~ 248 (603)
T KOG0458|consen 169 DEQSDPKDHLNLVVLGHVDAGKSTLMGHLLYDLGEISSRSMHKLERESKNLGKSSFAYAWILDETKEERERGVTMDVKTT 248 (603)
T ss_pred ccccCCccceEEEEEeccccchhhhhhHHHHHhcCccHHHHHHHHHHHHhcCCcceeeeEEeccchhhhhcceeEEeeeE
Confidence 3445566789999999999999999999982 1122334445555666
Q ss_pred EEEeCCEEEEEEecCCchhhHHhHHHHhcCCCEEEEEEeCCCCC---CHH--HHHHHHHHHHcCCCCCCCcEEEEeeCCC
Q 030429 51 KVTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAADRD---SVP--IARSELHELLMKPSLSGIPLLVLGNKID 125 (177)
Q Consensus 51 ~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~---~~~--~~~~~~~~~~~~~~~~~~~~iiv~nK~D 125 (177)
.++.....+.+.|.||+..|..-+......+|++++|+|++..+ .|+ ...+....++...+ -.-.+|++||+|
T Consensus 249 ~fes~~~~~tliDaPGhkdFi~nmi~g~sqaD~avLvvd~s~~~FE~gfd~~gQtrEha~llr~Lg--i~qlivaiNKmD 326 (603)
T KOG0458|consen 249 WFESKSKIVTLIDAPGHKDFIPNMISGASQADVAVLVVDASTGEFESGFDPGGQTREHALLLRSLG--ISQLIVAINKMD 326 (603)
T ss_pred EEecCceeEEEecCCCccccchhhhccccccceEEEEEECCcchhhhccCCCCchHHHHHHHHHcC--cceEEEEeeccc
Confidence 67778899999999999999887888888899999999997532 222 11222233333322 456889999999
Q ss_pred cccccC--HHH----HHHHh-CcccccCCceeEEEeeecCCCChHH
Q 030429 126 KSEALS--KQA----LVDQL-GLESITDREVCCYMISCKDSINIDA 164 (177)
Q Consensus 126 ~~~~~~--~~~----~~~~~-~~~~~~~~~~~~~~~Sa~~~~~i~~ 164 (177)
..++.+ .++ +...+ ....+....+.|++||+..|+|+-.
T Consensus 327 ~V~Wsq~RF~eIk~~l~~fL~~~~gf~es~v~FIPiSGl~GeNL~k 372 (603)
T KOG0458|consen 327 LVSWSQDRFEEIKNKLSSFLKESCGFKESSVKFIPISGLSGENLIK 372 (603)
T ss_pred ccCccHHHHHHHHHHHHHHHHHhcCcccCCcceEecccccCCcccc
Confidence 988643 222 23333 2334445667899999999998643
|
|
| >KOG3905 consensus Dynein light intermediate chain [Cell motility] | Back alignment and domain information |
|---|
Probab=99.59 E-value=3.6e-14 Score=101.60 Aligned_cols=168 Identities=15% Similarity=0.191 Sum_probs=115.0
Q ss_pred cccccceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEeC----CEEEEEEecCCchhhHHhHHHHhcCC
Q 030429 6 SLFFKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTKG----NVTIKLWDLGGQRRFRTMWERYCRGV 81 (177)
Q Consensus 6 ~~~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~----~~~~~~~D~~g~~~~~~~~~~~~~~~ 81 (177)
+-..+..-+|+++|+.|+||||||.++-+. ......+..++.+..+..+ -.++.+|-+.|+.....++...+...
T Consensus 46 ~sklpsgk~VlvlGdn~sGKtsLi~klqg~-e~~KkgsgLeY~yl~V~de~RDd~tr~~VWiLDGd~~h~~LLk~al~at 124 (473)
T KOG3905|consen 46 RSKLPSGKNVLVLGDNGSGKTSLISKLQGS-ETVKKGSGLEYLYLHVHDEDRDDLTRCNVWILDGDLYHKGLLKFALPAT 124 (473)
T ss_pred cccCCCCCeEEEEccCCCchhHHHHHhhcc-cccCCCCCcceEEEecccccchhhhhcceEEecCchhhhhHHhhccccc
Confidence 334456789999999999999999999643 3556666666666665433 35788999999877777766655432
Q ss_pred ----CEEEEEEeCCCCCCHHHHHHHHHHHHcCCCC---------------------------------------------
Q 030429 82 ----SAILYVVDAADRDSVPIARSELHELLMKPSL--------------------------------------------- 112 (177)
Q Consensus 82 ----d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~--------------------------------------------- 112 (177)
..+|++.|+++|+..-+..+.|..++.....
T Consensus 125 s~aetlviltasms~Pw~~lesLqkWa~Vl~ehidkl~i~~ee~ka~rqk~~k~wQeYvep~e~~pgsp~~r~t~~~~~~ 204 (473)
T KOG3905|consen 125 SLAETLVILTASMSNPWTLLESLQKWASVLREHIDKLKIPPEEMKAGRQKLEKDWQEYVEPGEDQPGSPQRRTTVVGSSA 204 (473)
T ss_pred CccceEEEEEEecCCcHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcCccccCCCCcccccccccCcc
Confidence 5889999999996655443333332221100
Q ss_pred ----------------CCCcEEEEeeCCCcccccCH-----H---HHHHHhCcccccCCceeEEEeeecCCCChHHHHHH
Q 030429 113 ----------------SGIPLLVLGNKIDKSEALSK-----Q---ALVDQLGLESITDREVCCYMISCKDSINIDAVIDW 168 (177)
Q Consensus 113 ----------------~~~~~iiv~nK~D~~~~~~~-----~---~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~ 168 (177)
-++|+++|.||||.....++ + .+.+.+-+.++...+...+++|+++..|++-|..+
T Consensus 205 de~~llPL~~dtLt~NlGi~vlVV~TK~D~~s~leke~eyrDehfdfiq~~lRkFCLr~GaaLiyTSvKE~KNidllyKY 284 (473)
T KOG3905|consen 205 DEHVLLPLGQDTLTHNLGIPVLVVCTKCDAVSVLEKEHEYRDEHFDFIQSHLRKFCLRYGAALIYTSVKETKNIDLLYKY 284 (473)
T ss_pred ccccccccCCcchhhcCCCcEEEEEeccchhhHhhhcchhhHHHHHHHHHHHHHHHHHcCceeEEeecccccchHHHHHH
Confidence 36799999999998542211 1 12222222333445668999999999999999999
Q ss_pred HHHHhh
Q 030429 169 LIKHSK 174 (177)
Q Consensus 169 l~~~~~ 174 (177)
|++.+.
T Consensus 285 ivhr~y 290 (473)
T KOG3905|consen 285 IVHRSY 290 (473)
T ss_pred HHHHhc
Confidence 998753
|
|
| >PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.5e-14 Score=106.97 Aligned_cols=157 Identities=15% Similarity=0.245 Sum_probs=82.2
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcCCCCCC------CCC-ccceeEEEEEeCCEEEEEEecCCchhhHHhHHHH-----
Q 030429 10 KQEMELSLIGLQNAGKTSLVNTIATGGYSED------MIP-TVGFNMRKVTKGNVTIKLWDLGGQRRFRTMWERY----- 77 (177)
Q Consensus 10 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~------~~~-t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~----- 77 (177)
..+++|+|+|++|+|||||+|+|.+-+-... ... |.....+ ...+.-.+.+||+||..........|
T Consensus 33 ~~~l~IaV~G~sGsGKSSfINalrGl~~~d~~aA~tGv~etT~~~~~Y-~~p~~pnv~lWDlPG~gt~~f~~~~Yl~~~~ 111 (376)
T PF05049_consen 33 NAPLNIAVTGESGSGKSSFINALRGLGHEDEGAAPTGVVETTMEPTPY-PHPKFPNVTLWDLPGIGTPNFPPEEYLKEVK 111 (376)
T ss_dssp H--EEEEEEESTTSSHHHHHHHHTT--TTSTTS--SSSHSCCTS-EEE-E-SS-TTEEEEEE--GGGSS--HHHHHHHTT
T ss_pred cCceEEEEECCCCCCHHHHHHHHhCCCCCCcCcCCCCCCcCCCCCeeC-CCCCCCCCeEEeCCCCCCCCCCHHHHHHHcc
Confidence 4578999999999999999999974221111 111 2222222 22333468999999954333223333
Q ss_pred hcCCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcc--cc-------cCHHH--------HHHHhC
Q 030429 78 CRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKS--EA-------LSKQA--------LVDQLG 140 (177)
Q Consensus 78 ~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~--~~-------~~~~~--------~~~~~~ 140 (177)
+...|.+|++.+- .|....-++...+.. .++|+.+|.||+|.. +. ...++ ..+.+.
T Consensus 112 ~~~yD~fiii~s~----rf~~ndv~La~~i~~---~gK~fyfVRTKvD~Dl~~~~~~~p~~f~~e~~L~~IR~~c~~~L~ 184 (376)
T PF05049_consen 112 FYRYDFFIIISSE----RFTENDVQLAKEIQR---MGKKFYFVRTKVDSDLYNERRRKPRTFNEEKLLQEIRENCLENLQ 184 (376)
T ss_dssp GGG-SEEEEEESS----S--HHHHHHHHHHHH---TT-EEEEEE--HHHHHHHHHCC-STT--HHTHHHHHHHHHHHHHH
T ss_pred ccccCEEEEEeCC----CCchhhHHHHHHHHH---cCCcEEEEEecccccHhhhhccCCcccCHHHHHHHHHHHHHHHHH
Confidence 4568988887663 455555555554444 378999999999951 11 11112 233333
Q ss_pred cccccCCceeEEEeeecCC--CChHHHHHHHHHHhhhc
Q 030429 141 LESITDREVCCYMISCKDS--INIDAVIDWLIKHSKTA 176 (177)
Q Consensus 141 ~~~~~~~~~~~~~~Sa~~~--~~i~~l~~~l~~~~~~~ 176 (177)
.... ..-++|.+|+.+- .....|.+.|.+-+..+
T Consensus 185 k~gv--~~P~VFLVS~~dl~~yDFp~L~~tL~~dLp~~ 220 (376)
T PF05049_consen 185 KAGV--SEPQVFLVSSFDLSKYDFPKLEETLEKDLPAH 220 (376)
T ss_dssp CTT---SS--EEEB-TTTTTSTTHHHHHHHHHHHS-GG
T ss_pred HcCC--CcCceEEEeCCCcccCChHHHHHHHHHHhHHH
Confidence 2222 2336888998764 56888999888876654
|
IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A. |
| >PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity | Back alignment and domain information |
|---|
Probab=99.58 E-value=5e-15 Score=104.55 Aligned_cols=115 Identities=18% Similarity=0.103 Sum_probs=59.9
Q ss_pred EEEEEecCCchhhHHhHHHHh--------cCCCEEEEEEeCCCCCCHHHH-HHHHHHHHcCCCCCCCcEEEEeeCCCccc
Q 030429 58 TIKLWDLGGQRRFRTMWERYC--------RGVSAILYVVDAADRDSVPIA-RSELHELLMKPSLSGIPLLVLGNKIDKSE 128 (177)
Q Consensus 58 ~~~~~D~~g~~~~~~~~~~~~--------~~~d~~i~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~iiv~nK~D~~~ 128 (177)
.+.++|||||.++...+.... ...-++++++|+.-....... ...+...... ..-..|.+.|+||+|+.+
T Consensus 92 ~y~l~DtPGQiElf~~~~~~~~i~~~L~~~~~~~~v~LvD~~~~~~~~~f~s~~L~s~s~~-~~~~lP~vnvlsK~Dl~~ 170 (238)
T PF03029_consen 92 DYLLFDTPGQIELFTHSDSGRKIVERLQKNGRLVVVFLVDSSFCSDPSKFVSSLLLSLSIM-LRLELPHVNVLSKIDLLS 170 (238)
T ss_dssp SEEEEE--SSHHHHHHSHHHHHHHHTSSS----EEEEEE-GGG-SSHHHHHHHHHHHHHHH-HHHTSEEEEEE--GGGS-
T ss_pred cEEEEeCCCCEEEEEechhHHHHHHHHhhhcceEEEEEEecccccChhhHHHHHHHHHHHH-hhCCCCEEEeeeccCccc
Confidence 688999999988766554432 334588999998654432222 2222221111 012689999999999987
Q ss_pred ccC--------------------HHHHHHHhCcccccCCce-eEEEeeecCCCChHHHHHHHHHHh
Q 030429 129 ALS--------------------KQALVDQLGLESITDREV-CCYMISCKDSINIDAVIDWLIKHS 173 (177)
Q Consensus 129 ~~~--------------------~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~l~~~l~~~~ 173 (177)
... ...+.+.+.......... .++++|+++++|+++++..+.+.+
T Consensus 171 ~~~~~~l~~~~d~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~f~pls~~~~~~~~~L~~~id~a~ 236 (238)
T PF03029_consen 171 KYLEFILEWFEDPDSLEDLLESDYKKLNEEIAELLDDFGLVIRFIPLSSKDGEGMEELLAAIDKAN 236 (238)
T ss_dssp HHHHHHHHHHHSHHHHHHHHHT-HHHHHHHHHHHCCCCSSS---EE-BTTTTTTHHHHHHHHHHHH
T ss_pred chhHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEECCChHHHHHHHHHHHHHh
Confidence 220 011111221111112233 799999999999999999988764
|
; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A. |
| >PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria | Back alignment and domain information |
|---|
Probab=99.57 E-value=5e-14 Score=98.25 Aligned_cols=159 Identities=16% Similarity=0.108 Sum_probs=90.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCC----CCccceeEEEEEeCCEEEEEEecCCchh-------hHHhHHH----H
Q 030429 13 MELSLIGLQNAGKTSLVNTIATGGYSEDM----IPTVGFNMRKVTKGNVTIKLWDLGGQRR-------FRTMWER----Y 77 (177)
Q Consensus 13 ~~i~i~G~~~~GKSsli~~l~~~~~~~~~----~~t~~~~~~~~~~~~~~~~~~D~~g~~~-------~~~~~~~----~ 77 (177)
++|+++|.+||||||++|.+++....... ..|..........++..+.++||||-.+ ....+.. .
T Consensus 1 l~IlllG~tGsGKSs~~N~ilg~~~f~~~~~~~~~t~~~~~~~~~~~g~~v~VIDTPGl~d~~~~~~~~~~~i~~~l~~~ 80 (212)
T PF04548_consen 1 LRILLLGKTGSGKSSLGNSILGKEVFKSGSSAKSVTQECQKYSGEVDGRQVTVIDTPGLFDSDGSDEEIIREIKRCLSLC 80 (212)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSS-SS--TTTSS--SS-EEEEEEETTEEEEEEE--SSEETTEEHHHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHhcccceeeccccCCcccccceeeeeecceEEEEEeCCCCCCCcccHHHHHHHHHHHHHhc
Confidence 58999999999999999999977654332 2355566666678999999999999211 1111111 2
Q ss_pred hcCCCEEEEEEeCCCCCC-HHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccCHHHHHHH-----hCc--ccccCCce
Q 030429 78 CRGVSAILYVVDAADRDS-VPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQ-----LGL--ESITDREV 149 (177)
Q Consensus 78 ~~~~d~~i~v~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~-----~~~--~~~~~~~~ 149 (177)
..+.|++++|++++.... -.....++..+.... --..+++|.|..|.......++..+. +.. .....
T Consensus 81 ~~g~ha~llVi~~~r~t~~~~~~l~~l~~~FG~~--~~k~~ivvfT~~d~~~~~~~~~~l~~~~~~~l~~li~~c~~--- 155 (212)
T PF04548_consen 81 SPGPHAFLLVIPLGRFTEEDREVLELLQEIFGEE--IWKHTIVVFTHADELEDDSLEDYLKKESNEALQELIEKCGG--- 155 (212)
T ss_dssp TT-ESEEEEEEETTB-SHHHHHHHHHHHHHHCGG--GGGGEEEEEEEGGGGTTTTHHHHHHHHHHHHHHHHHHHTTT---
T ss_pred cCCCeEEEEEEecCcchHHHHHHHHHHHHHccHH--HHhHhhHHhhhccccccccHHHHHhccCchhHhHHhhhcCC---
Confidence 456899999999973211 112222333332221 12468999999998776554333331 110 11111
Q ss_pred eEEEeeec------CCCChHHHHHHHHHHhhhc
Q 030429 150 CCYMISCK------DSINIDAVIDWLIKHSKTA 176 (177)
Q Consensus 150 ~~~~~Sa~------~~~~i~~l~~~l~~~~~~~ 176 (177)
.++..+.+ +...+.+|++.+-+++.+.
T Consensus 156 R~~~f~n~~~~~~~~~~qv~~Ll~~ie~mv~~n 188 (212)
T PF04548_consen 156 RYHVFNNKTKDKEKDESQVSELLEKIEEMVQEN 188 (212)
T ss_dssp CEEECCTTHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred EEEEEeccccchhhhHHHHHHHHHHHHHHHHHc
Confidence 23333333 3456888998888877653
|
The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C .... |
| >COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.56 E-value=5.8e-14 Score=103.97 Aligned_cols=117 Identities=21% Similarity=0.283 Sum_probs=87.4
Q ss_pred ccccceeEEEEEcCCCCCHHHHHHHHhc--C------CC----------------CCCCCCccceeEEEEEeCCEEEEEE
Q 030429 7 LFFKQEMELSLIGLQNAGKTSLVNTIAT--G------GY----------------SEDMIPTVGFNMRKVTKGNVTIKLW 62 (177)
Q Consensus 7 ~~~~~~~~i~i~G~~~~GKSsli~~l~~--~------~~----------------~~~~~~t~~~~~~~~~~~~~~~~~~ 62 (177)
-+..+.-..+|+-.|.+|||||...|+- + .+ ..+.+-+.......+.+++..+++.
T Consensus 7 ~Ev~rRRTFAIISHPDAGKTTlTEkLLlfGgaIq~AG~Vk~rk~~~~a~SDWM~iEkqRGISVtsSVMqF~Y~~~~iNLL 86 (528)
T COG4108 7 QEVARRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGKHAKSDWMEIEKQRGISVTSSVMQFDYADCLVNLL 86 (528)
T ss_pred HHHhhhcceeEEecCCCCcccHHHHHHHhcchhhhcceeeeccCCcccccHHHHHHHhcCceEEeeEEEeccCCeEEecc
Confidence 3456667789999999999999999971 0 00 1111123334455577889999999
Q ss_pred ecCCchhhHHhHHHHhcCCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccc
Q 030429 63 DLGGQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSE 128 (177)
Q Consensus 63 D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~ 128 (177)
||||+++|..-....+..+|.+++|+|+.. ..+.....+.+++.. +++|++-++||.|...
T Consensus 87 DTPGHeDFSEDTYRtLtAvDsAvMVIDaAK--GiE~qT~KLfeVcrl---R~iPI~TFiNKlDR~~ 147 (528)
T COG4108 87 DTPGHEDFSEDTYRTLTAVDSAVMVIDAAK--GIEPQTLKLFEVCRL---RDIPIFTFINKLDREG 147 (528)
T ss_pred CCCCccccchhHHHHHHhhheeeEEEeccc--CccHHHHHHHHHHhh---cCCceEEEeecccccc
Confidence 999999999888888899999999999944 455555555555444 7899999999999754
|
|
| >TIGR00490 aEF-2 translation elongation factor aEF-2 | Back alignment and domain information |
|---|
Probab=99.56 E-value=4e-14 Score=114.35 Aligned_cols=114 Identities=21% Similarity=0.235 Sum_probs=79.1
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcC---------------CCCCC---CCCccceeEE----EEEeCCEEEEEEecCCc
Q 030429 10 KQEMELSLIGLQNAGKTSLVNTIATG---------------GYSED---MIPTVGFNMR----KVTKGNVTIKLWDLGGQ 67 (177)
Q Consensus 10 ~~~~~i~i~G~~~~GKSsli~~l~~~---------------~~~~~---~~~t~~~~~~----~~~~~~~~~~~~D~~g~ 67 (177)
.+..||+++|+.++|||||+++|+.. .+... ...|+..... ..+.+++.+++|||||+
T Consensus 17 ~~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~~~~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~i~liDTPG~ 96 (720)
T TIGR00490 17 KFIRNIGIVAHIDHGKTTLSDNLLAGAGMISEELAGQQLYLDFDEQEQERGITINAANVSMVHEYEGNEYLINLIDTPGH 96 (720)
T ss_pred ccccEEEEEEeCCCCHHHHHHHHHHHcCCCchhcCCceeecCCCHHHHhhcchhhcccceeEEeecCCceEEEEEeCCCc
Confidence 34579999999999999999999742 11110 1123332221 24567799999999999
Q ss_pred hhhHHhHHHHhcCCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccc
Q 030429 68 RRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSE 128 (177)
Q Consensus 68 ~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~ 128 (177)
.+|......++..+|++++|+|+.+...... ...+..... .+.|.++++||+|...
T Consensus 97 ~~f~~~~~~al~~aD~~llVvda~~g~~~~t-~~~~~~~~~----~~~p~ivviNKiD~~~ 152 (720)
T TIGR00490 97 VDFGGDVTRAMRAVDGAIVVVCAVEGVMPQT-ETVLRQALK----ENVKPVLFINKVDRLI 152 (720)
T ss_pred cccHHHHHHHHHhcCEEEEEEecCCCCCccH-HHHHHHHHH----cCCCEEEEEEChhccc
Confidence 9998888888999999999999976432222 222222222 3578889999999864
|
This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD. |
| >TIGR00101 ureG urease accessory protein UreG | Back alignment and domain information |
|---|
Probab=99.54 E-value=3.1e-13 Score=93.23 Aligned_cols=101 Identities=22% Similarity=0.282 Sum_probs=62.8
Q ss_pred EEEEEEecCCchhhHHhHHHHhcCCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcE--EEEeeCCCcccc--cCH
Q 030429 57 VTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPL--LVLGNKIDKSEA--LSK 132 (177)
Q Consensus 57 ~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~--iiv~nK~D~~~~--~~~ 132 (177)
.+..++++.|..-....... + +|.++.|+|+.+.+.... ... ..+.. ++++||+|+.+. ...
T Consensus 92 ~D~iiIEt~G~~l~~~~~~~-l--~~~~i~vvD~~~~~~~~~---~~~--------~qi~~ad~~~~~k~d~~~~~~~~~ 157 (199)
T TIGR00101 92 LEMVFIESGGDNLSATFSPE-L--ADLTIFVIDVAAGDKIPR---KGG--------PGITRSDLLVINKIDLAPMVGADL 157 (199)
T ss_pred CCEEEEECCCCCcccccchh-h--hCcEEEEEEcchhhhhhh---hhH--------hHhhhccEEEEEhhhccccccccH
Confidence 45556677773211111111 1 578999999976544221 100 12233 889999999853 334
Q ss_pred HHHHHHhCcccccCCceeEEEeeecCCCChHHHHHHHHHHhh
Q 030429 133 QALVDQLGLESITDREVCCYMISCKDSINIDAVIDWLIKHSK 174 (177)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~ 174 (177)
+...+.+... +...+++++||++|.|++++++++.+.+.
T Consensus 158 ~~~~~~~~~~---~~~~~i~~~Sa~~g~gi~el~~~i~~~~~ 196 (199)
T TIGR00101 158 GVMERDAKKM---RGEKPFIFTNLKTKEGLDTVIDWIEHYAL 196 (199)
T ss_pred HHHHHHHHHh---CCCCCEEEEECCCCCCHHHHHHHHHhhcC
Confidence 4444444322 33568999999999999999999998764
|
This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel. |
| >COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.54 E-value=2.8e-13 Score=100.56 Aligned_cols=155 Identities=16% Similarity=0.106 Sum_probs=115.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCC-----CCCCCccceeEEEEEeCCEEEEEEecCCchhhHHhHHHHhcCCCEEEEEE
Q 030429 14 ELSLIGLQNAGKTSLVNTIATGGYS-----EDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVV 88 (177)
Q Consensus 14 ~i~i~G~~~~GKSsli~~l~~~~~~-----~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~ 88 (177)
.|+..|.--.|||||++.+.+.... ...+.|+.+.+.....++....++|.||++++-..+...+...|.+++|+
T Consensus 2 ii~t~GhidHgkT~L~~altg~~~d~l~EekKRG~TiDlg~~y~~~~d~~~~fIDvpgh~~~i~~miag~~~~d~alLvV 81 (447)
T COG3276 2 IIGTAGHIDHGKTTLLKALTGGVTDRLPEEKKRGITIDLGFYYRKLEDGVMGFIDVPGHPDFISNLLAGLGGIDYALLVV 81 (447)
T ss_pred eEEEeeeeeccchhhhhhhcccccccchhhhhcCceEeeeeEeccCCCCceEEeeCCCcHHHHHHHHhhhcCCceEEEEE
Confidence 4778899999999999999865432 23445777777777778889999999999999888888888999999999
Q ss_pred eCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccCHHHHHHHhCcccccCCceeEEEeeecCCCChHHHHHH
Q 030429 89 DAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCKDSINIDAVIDW 168 (177)
Q Consensus 89 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~ 168 (177)
|+++.- ......-..++... .....++|+||+|..++...++..+++..... .+..++|.+|+.+|.||++|.+.
T Consensus 82 ~~deGl--~~qtgEhL~iLdll--gi~~giivltk~D~~d~~r~e~~i~~Il~~l~-l~~~~i~~~s~~~g~GI~~Lk~~ 156 (447)
T COG3276 82 AADEGL--MAQTGEHLLILDLL--GIKNGIIVLTKADRVDEARIEQKIKQILADLS-LANAKIFKTSAKTGRGIEELKNE 156 (447)
T ss_pred eCccCc--chhhHHHHHHHHhc--CCCceEEEEeccccccHHHHHHHHHHHHhhcc-cccccccccccccCCCHHHHHHH
Confidence 996532 22222222222322 13456899999999987655555555432222 55667899999999999999999
Q ss_pred HHHHh
Q 030429 169 LIKHS 173 (177)
Q Consensus 169 l~~~~ 173 (177)
|.+.+
T Consensus 157 l~~L~ 161 (447)
T COG3276 157 LIDLL 161 (447)
T ss_pred HHHhh
Confidence 99987
|
|
| >COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.9e-13 Score=98.81 Aligned_cols=151 Identities=16% Similarity=0.101 Sum_probs=99.2
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHhcCC-----------------------------------CCCCCCCccceeEEEEE
Q 030429 9 FKQEMELSLIGLQNAGKTSLVNTIATGG-----------------------------------YSEDMIPTVGFNMRKVT 53 (177)
Q Consensus 9 ~~~~~~i~i~G~~~~GKSsli~~l~~~~-----------------------------------~~~~~~~t~~~~~~~~~ 53 (177)
.+..++++-+|...-||||||-||+... .++..+-|+..-++.+.
T Consensus 3 ~k~lLRfiTcGSVDDGKSTLIGRLL~Dtk~i~eDQla~l~~dS~~~~t~g~~~D~ALLvDGL~AEREQGITIDVAYRyFs 82 (431)
T COG2895 3 HKSLLRFITCGSVDDGKSTLIGRLLYDTKAIYEDQLASLERDSKRKGTQGEKIDLALLVDGLEAEREQGITIDVAYRYFS 82 (431)
T ss_pred cccceeEEEeccccCcchhhhhhhhhcchhhhHHHHHHHhcccccccCCCCccchhhhhhhhHHHHhcCceEEEEeeecc
Confidence 3567899999999999999999998321 01122335555555566
Q ss_pred eCCEEEEEEecCCchhhHHhHHHHhcCCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccC--
Q 030429 54 KGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALS-- 131 (177)
Q Consensus 54 ~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~-- 131 (177)
.+...|.+.||||+++|..-+.....-||++|+++|+ +....+....=..+.... .-..+++++||+|+.+..+
T Consensus 83 T~KRkFIiADTPGHeQYTRNMaTGASTadlAIlLVDA--R~Gvl~QTrRHs~I~sLL--GIrhvvvAVNKmDLvdy~e~~ 158 (431)
T COG2895 83 TEKRKFIIADTPGHEQYTRNMATGASTADLAILLVDA--RKGVLEQTRRHSFIASLL--GIRHVVVAVNKMDLVDYSEEV 158 (431)
T ss_pred cccceEEEecCCcHHHHhhhhhcccccccEEEEEEec--chhhHHHhHHHHHHHHHh--CCcEEEEEEeeecccccCHHH
Confidence 7788999999999999987776667779999999999 433433322211221111 1345788899999987532
Q ss_pred HHHHHHHhCccc--ccCCceeEEEeeecCCCChH
Q 030429 132 KQALVDQLGLES--ITDREVCCYMISCKDSINID 163 (177)
Q Consensus 132 ~~~~~~~~~~~~--~~~~~~~~~~~Sa~~~~~i~ 163 (177)
.+++.+.+.... .......++|+||..|.|+-
T Consensus 159 F~~I~~dy~~fa~~L~~~~~~~IPiSAl~GDNV~ 192 (431)
T COG2895 159 FEAIVADYLAFAAQLGLKDVRFIPISALLGDNVV 192 (431)
T ss_pred HHHHHHHHHHHHHHcCCCcceEEechhccCCccc
Confidence 233333222111 11233479999999998864
|
|
| >KOG0461 consensus Selenocysteine-specific elongation factor [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.52 E-value=4e-13 Score=97.10 Aligned_cols=160 Identities=18% Similarity=0.196 Sum_probs=101.9
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcCC----CCCCCCC-----ccceeEEEE---------EeCCEEEEEEecCCchhhH
Q 030429 10 KQEMELSLIGLQNAGKTSLVNTIATGG----YSEDMIP-----TVGFNMRKV---------TKGNVTIKLWDLGGQRRFR 71 (177)
Q Consensus 10 ~~~~~i~i~G~~~~GKSsli~~l~~~~----~~~~~~~-----t~~~~~~~~---------~~~~~~~~~~D~~g~~~~~ 71 (177)
+-+++++++|...||||||.+++..-. |.....+ |....+..+ +.+..++.++|+||+...-
T Consensus 5 p~n~N~GiLGHvDSGKTtLarals~~~STaAFDk~pqS~eRgiTLDLGFS~~~v~~parLpq~e~lq~tlvDCPGHasLI 84 (522)
T KOG0461|consen 5 PSNLNLGILGHVDSGKTTLARALSELGSTAAFDKHPQSTERGITLDLGFSTMTVLSPARLPQGEQLQFTLVDCPGHASLI 84 (522)
T ss_pred CceeeeeeEeeccCchHHHHHHHHhhccchhhccCCcccccceeEeecceeeecccccccCccccceeEEEeCCCcHHHH
Confidence 456999999999999999999997422 2222222 222111111 2345788999999998777
Q ss_pred HhHHHHhcCCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccCH----HHHHHHhCc--ccc-
Q 030429 72 TMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSK----QALVDQLGL--ESI- 144 (177)
Q Consensus 72 ~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~----~~~~~~~~~--~~~- 144 (177)
.......+-.|..++|+|+..........-.+..- ......++|+||+|...+... ++....+++ ...
T Consensus 85 RtiiggaqiiDlm~lviDv~kG~QtQtAEcLiig~-----~~c~klvvvinkid~lpE~qr~ski~k~~kk~~KtLe~t~ 159 (522)
T KOG0461|consen 85 RTIIGGAQIIDLMILVIDVQKGKQTQTAECLIIGE-----LLCKKLVVVINKIDVLPENQRASKIEKSAKKVRKTLESTG 159 (522)
T ss_pred HHHHhhhheeeeeeEEEehhcccccccchhhhhhh-----hhccceEEEEeccccccchhhhhHHHHHHHHHHHHHHhcC
Confidence 66666667789999999996543222222222111 123457888999997665332 222222221 122
Q ss_pred cCCceeEEEeeecCC----CChHHHHHHHHHHhh
Q 030429 145 TDREVCCYMISCKDS----INIDAVIDWLIKHSK 174 (177)
Q Consensus 145 ~~~~~~~~~~Sa~~~----~~i~~l~~~l~~~~~ 174 (177)
...+.|++++||++| +++.+|.+.|.+.+.
T Consensus 160 f~g~~PI~~vsa~~G~~~~~~i~eL~e~l~s~if 193 (522)
T KOG0461|consen 160 FDGNSPIVEVSAADGYFKEEMIQELKEALESRIF 193 (522)
T ss_pred cCCCCceeEEecCCCccchhHHHHHHHHHHHhhc
Confidence 234579999999999 889999888887764
|
|
| >COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.51 E-value=3.3e-13 Score=100.80 Aligned_cols=157 Identities=22% Similarity=0.342 Sum_probs=107.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCC--CCCC-------CCC-----ccceeEE----EEEeCCEEEEEEecCCchhhHHhH
Q 030429 13 MELSLIGLQNAGKTSLVNTIATGG--YSED-------MIP-----TVGFNMR----KVTKGNVTIKLWDLGGQRRFRTMW 74 (177)
Q Consensus 13 ~~i~i~G~~~~GKSsli~~l~~~~--~~~~-------~~~-----t~~~~~~----~~~~~~~~~~~~D~~g~~~~~~~~ 74 (177)
-+|+|+-+...|||||+..|+..+ |... ..+ .-+++.. .+.++++.++++||||+.+|-...
T Consensus 6 RNIAIIAHVDHGKTTLVD~LLkQSGtf~~~e~v~ERvMDSnDlEkERGITILaKnTav~~~~~~INIvDTPGHADFGGEV 85 (603)
T COG1217 6 RNIAIIAHVDHGKTTLVDALLKQSGTFREREEVAERVMDSNDLEKERGITILAKNTAVNYNGTRINIVDTPGHADFGGEV 85 (603)
T ss_pred ceeEEEEEecCCcchHHHHHHhhccccccccchhhhhcCccchhhhcCcEEEeccceeecCCeEEEEecCCCcCCccchh
Confidence 489999999999999999998432 1110 111 1122222 256788999999999999998888
Q ss_pred HHHhcCCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccCHHHHHHHhCc---ccc--cCCce
Q 030429 75 ERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGL---ESI--TDREV 149 (177)
Q Consensus 75 ~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~---~~~--~~~~~ 149 (177)
...+.=.|.+++++|+.+.. ++..+..+...+.. +.+-|+|+||+|.+.....+-+.+.+.+ ... .+-.+
T Consensus 86 ERvl~MVDgvlLlVDA~EGp-MPQTrFVlkKAl~~----gL~PIVVvNKiDrp~Arp~~Vvd~vfDLf~~L~A~deQLdF 160 (603)
T COG1217 86 ERVLSMVDGVLLLVDASEGP-MPQTRFVLKKALAL----GLKPIVVINKIDRPDARPDEVVDEVFDLFVELGATDEQLDF 160 (603)
T ss_pred hhhhhhcceEEEEEEcccCC-CCchhhhHHHHHHc----CCCcEEEEeCCCCCCCCHHHHHHHHHHHHHHhCCChhhCCC
Confidence 88888899999999997653 44445555555554 5566788999999875332222222211 111 12346
Q ss_pred eEEEeeecCC----------CChHHHHHHHHHHhh
Q 030429 150 CCYMISCKDS----------INIDAVIDWLIKHSK 174 (177)
Q Consensus 150 ~~~~~Sa~~~----------~~i~~l~~~l~~~~~ 174 (177)
|++..|++.| .++.-||+.|.+.+.
T Consensus 161 PivYAS~~~G~a~~~~~~~~~~m~pLfe~I~~hvp 195 (603)
T COG1217 161 PIVYASARNGTASLDPEDEADDMAPLFETILDHVP 195 (603)
T ss_pred cEEEeeccCceeccCccccccchhHHHHHHHHhCC
Confidence 8999999876 468889999988764
|
|
| >TIGR00750 lao LAO/AO transport system ATPase | Back alignment and domain information |
|---|
Probab=99.51 E-value=6.7e-13 Score=97.19 Aligned_cols=157 Identities=15% Similarity=0.095 Sum_probs=92.4
Q ss_pred ecccccceeEEEEEcCCCCCHHHHHHHHhcC----CC-------CCCCCC-----------------ccceeEEEE----
Q 030429 5 ISLFFKQEMELSLIGLQNAGKTSLVNTIATG----GY-------SEDMIP-----------------TVGFNMRKV---- 52 (177)
Q Consensus 5 ~~~~~~~~~~i~i~G~~~~GKSsli~~l~~~----~~-------~~~~~~-----------------t~~~~~~~~---- 52 (177)
..........|+++|++|+|||||++.+... +. ...... ..+......
T Consensus 27 ~~~~~~~~~~i~i~G~~G~GKttl~~~l~~~~~~~~~~v~~i~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 106 (300)
T TIGR00750 27 IMPYTGNAHRVGITGTPGAGKSTLLEALGMELRRRGLKVAVIAVDPSSPFTGGSILGDRTRMQRLATDPGAFIRSMPTRG 106 (300)
T ss_pred CCcccCCceEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCCCcchhhhcccchhhhhcccCCCceeeecCccc
Confidence 3445567789999999999999999998631 00 000000 001111111
Q ss_pred ----------------EeCCEEEEEEecCCchhhHHhHHHHhcCCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCc
Q 030429 53 ----------------TKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIP 116 (177)
Q Consensus 53 ----------------~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (177)
+..++++.++||+|...... ..+..+|.++++... .+.+++......+ ..+|
T Consensus 107 ~~~~~~~~~~~~~~~l~~~g~D~viidT~G~~~~e~---~i~~~aD~i~vv~~~---~~~~el~~~~~~l------~~~~ 174 (300)
T TIGR00750 107 HLGGLSQATRELILLLDAAGYDVIIVETVGVGQSEV---DIANMADTFVVVTIP---GTGDDLQGIKAGL------MEIA 174 (300)
T ss_pred cccchhHHHHHHHHHHHhCCCCEEEEeCCCCchhhh---HHHHhhceEEEEecC---CccHHHHHHHHHH------hhhc
Confidence 12367889999998543221 245567888887543 3334443333322 2567
Q ss_pred EEEEeeCCCcccccCHHHHHH----HhCccccc--CCceeEEEeeecCCCChHHHHHHHHHHh
Q 030429 117 LLVLGNKIDKSEALSKQALVD----QLGLESIT--DREVCCYMISCKDSINIDAVIDWLIKHS 173 (177)
Q Consensus 117 ~iiv~nK~D~~~~~~~~~~~~----~~~~~~~~--~~~~~~~~~Sa~~~~~i~~l~~~l~~~~ 173 (177)
.++|+||+|+........... .+...... ....+++++||+++.|++++++++.+..
T Consensus 175 ~ivv~NK~Dl~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~v~~iSA~~g~Gi~~L~~~i~~~~ 237 (300)
T TIGR00750 175 DIYVVNKADGEGATNVTIARLMLALALEEIRRREDGWRPPVLTTSAVEGRGIDELWDAIEEHK 237 (300)
T ss_pred cEEEEEcccccchhHHHHHHHHHHHHHhhccccccCCCCCEEEEEccCCCCHHHHHHHHHHHH
Confidence 899999999976543221111 11110000 1113589999999999999999998864
|
Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however. |
| >PF00503 G-alpha: G-protein alpha subunit; InterPro: IPR001019 Guanine nucleotide binding proteins (G proteins) are membrane-associated, heterotrimeric proteins composed of three subunits: alpha (IPR001019 from INTERPRO), beta (IPR001632 from INTERPRO) and gamma (IPR001770 from INTERPRO) [] | Back alignment and domain information |
|---|
Probab=99.51 E-value=8.2e-14 Score=105.52 Aligned_cols=132 Identities=21% Similarity=0.327 Sum_probs=96.9
Q ss_pred CCccceeEEEEEe-CCEEEEEEecCCchhhHHhHHHHhcCCCEEEEEEeCCCCC----------CHHHHHHHHHHHHcCC
Q 030429 42 IPTVGFNMRKVTK-GNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAADRD----------SVPIARSELHELLMKP 110 (177)
Q Consensus 42 ~~t~~~~~~~~~~-~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~----------~~~~~~~~~~~~~~~~ 110 (177)
..|.|+....+.. ++..+.++|++|++..+..|..++.+.+++++|+++++.+ .+.+....+..++...
T Consensus 220 ~~T~Gi~e~~f~~~~~~~~~~~DvGGqr~eRkKW~~~F~~v~~vif~vsls~ydq~~~ed~~~nrl~esl~lF~~i~~~~ 299 (389)
T PF00503_consen 220 VKTTGITEIDFNFSGSRKFRLIDVGGQRSERKKWIHCFEDVTAVIFVVSLSEYDQTLYEDPNTNRLHESLNLFESICNNP 299 (389)
T ss_dssp ---SSEEEEEEEE-TTEEEEEEEETSSGGGGGGGGGGGTTESEEEEEEEGGGGGSBESSSTTSBHHHHHHHHHHHHHTSG
T ss_pred CCCCCeeEEEEEeecccccceecCCCCchhhhhHHHHhccccEEEEeecccchhhhhcccchHHHHHHHHHHHHHHHhCc
Confidence 3577788778888 9999999999999999999999999999999999997522 2666678888888876
Q ss_pred CCCCCcEEEEeeCCCcccc--------------------cCHHHHHHHhCc----ccccC---CceeEEEeeecCCCChH
Q 030429 111 SLSGIPLLVLGNKIDKSEA--------------------LSKQALVDQLGL----ESITD---REVCCYMISCKDSINID 163 (177)
Q Consensus 111 ~~~~~~~iiv~nK~D~~~~--------------------~~~~~~~~~~~~----~~~~~---~~~~~~~~Sa~~~~~i~ 163 (177)
...+.|+++++||.|+... ...+...+.+.. ..... +.+.++.++|.+..+++
T Consensus 300 ~~~~~~iil~lnK~D~f~~Kl~~~~~l~~~fp~y~g~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~h~t~a~d~~~~~ 379 (389)
T PF00503_consen 300 WFKNTPIILFLNKIDLFEEKLKKGPKLSKYFPDYTGDRPNDVDSAIKFIKNKFLRLNRNNSPSRRIYVHFTCATDTENIR 379 (389)
T ss_dssp GGTTSEEEEEEE-HHHHHHHTTTSSCGGGTSTTGGSH-TSSHHHHHHHHHHHHHCTHSTTTTCS-EEEEEESTTSHHHHH
T ss_pred ccccCceEEeeecHHHHHHHccCCCchHhhCCCCCCCcccCHHHHHHHHHHHHHHhccCCCCCcceEEEEeeecccHHHH
Confidence 7778999999999996431 122333332221 11111 55567789999999999
Q ss_pred HHHHHHHHHh
Q 030429 164 AVIDWLIKHS 173 (177)
Q Consensus 164 ~l~~~l~~~~ 173 (177)
.+|+.+.+.+
T Consensus 380 ~v~~~v~~~i 389 (389)
T PF00503_consen 380 KVFNAVKDII 389 (389)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHhcCcC
Confidence 9999988754
|
G proteins and their receptors (GPCRs) form one of the most prevalent signalling systems in mammalian cells, regulating systems as diverse as sensory perception, cell growth and hormonal regulation []. At the cell surface, the binding of ligands such as hormones and neurotransmitters to a GPCR activates the receptor by causing a conformational change, which in turn activates the bound G protein on the intracellular-side of the membrane. The activated receptor promotes the exchange of bound GDP for GTP on the G protein alpha subunit. GTP binding changes the conformation of switch regions within the alpha subunit, which allows the bound trimeric G protein (inactive) to be released from the receptor, and to dissociate into active alpha subunit (GTP-bound) and beta/gamma dimer. The alpha subunit and the beta/gamma dimer go on to activate distinct downstream effectors, such as adenylyl cyclase, phosphodiesterases, phospholipase C, and ion channels. These effectors in turn regulate the intracellular concentrations of secondary messengers, such as cAMP, diacylglycerol, sodium or calcium cations, which ultimately lead to a physiological response, usually via the downstream regulation of gene transcription. The cycle is completed by the hydrolysis of alpha subunit-bound GTP to GDP, resulting in the re-association of the alpha and beta/gamma subunits and their binding to the receptor, which terminates the signal []. The length of the G protein signal is controlled by the duration of the GTP-bound alpha subunit, which can be regulated by RGS (regulator of G protein signalling) proteins (IPR000342 from INTERPRO) or by covalent modifications []. There are several isoforms of each subunit, many of which have splice variants, which together can make up hundreds of combinations of G proteins. The specific combination of subunits in heterotrimeric G proteins affects not only which receptor it can bind to, but also which downstream target is affected, providing the means to target specific physiological processes in response to specific external stimuli [, ]. G proteins carry lipid modifications on one or more of their subunits to target them to the plasma membrane and to contribute to protein interactions. This family consists of the G protein alpha subunit, which acts as a weak GTPase. G protein classes are defined based on the sequence and function of their alpha subunits, which in mammals fall into four main categories: G(S)alpha, G(Q)alpha, G(I)alpha and G(12)alpha; there are also fungal and plant classes of alpha subunits. The alpha subunit consists of two domains: a GTP-binding domain and a helical insertion domain (IPR011025 from INTERPRO). The GTP-binding domain is homologous to Ras-like small GTPases, and includes switch regions I and II, which change conformation during activation. The switch regions are loops of alpha-helices with conformations sensitive to guanine nucleotides. The helical insertion domain is inserted into the GTP-binding domain before switch region I and is unique to heterotrimeric G proteins. This helical insertion domain functions to sequester the guanine nucleotide at the interface with the GTP-binding domain and must be displaced to enable nucleotide dissociation.; GO: 0004871 signal transducer activity, 0019001 guanyl nucleotide binding, 0007186 G-protein coupled receptor protein signaling pathway; PDB: 3QI2_B 3QE0_A 2IK8_A 2OM2_A 2GTP_B 2XNS_B 3ONW_B 1KJY_A 2EBC_A 1Y3A_B .... |
| >PRK07560 elongation factor EF-2; Reviewed | Back alignment and domain information |
|---|
Probab=99.50 E-value=5.9e-13 Score=107.91 Aligned_cols=113 Identities=25% Similarity=0.269 Sum_probs=76.3
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcCCC--CC---------C-------CCCccceeEEEE----EeCCEEEEEEecCCc
Q 030429 10 KQEMELSLIGLQNAGKTSLVNTIATGGY--SE---------D-------MIPTVGFNMRKV----TKGNVTIKLWDLGGQ 67 (177)
Q Consensus 10 ~~~~~i~i~G~~~~GKSsli~~l~~~~~--~~---------~-------~~~t~~~~~~~~----~~~~~~~~~~D~~g~ 67 (177)
.+.-+|+++|+.++|||||+++++...- .. + ..-|+......+ ...+..++++||||+
T Consensus 18 ~~iRni~iigh~d~GKTTL~e~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~ 97 (731)
T PRK07560 18 EQIRNIGIIAHIDHGKTTLSDNLLAGAGMISEELAGEQLALDFDEEEQARGITIKAANVSMVHEYEGKEYLINLIDTPGH 97 (731)
T ss_pred hcccEEEEEEeCCCCHHHHHHHHHHHcCCcchhhcCcceecCccHHHHHhhhhhhccceEEEEEecCCcEEEEEEcCCCc
Confidence 3446899999999999999999974211 00 0 001121111111 224788999999999
Q ss_pred hhhHHhHHHHhcCCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcc
Q 030429 68 RRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKS 127 (177)
Q Consensus 68 ~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~ 127 (177)
.+|.......+..+|++++|+|+....... ....+...... +.|.++++||+|..
T Consensus 98 ~df~~~~~~~l~~~D~avlVvda~~g~~~~-t~~~~~~~~~~----~~~~iv~iNK~D~~ 152 (731)
T PRK07560 98 VDFGGDVTRAMRAVDGAIVVVDAVEGVMPQ-TETVLRQALRE----RVKPVLFINKVDRL 152 (731)
T ss_pred cChHHHHHHHHHhcCEEEEEEECCCCCCcc-HHHHHHHHHHc----CCCeEEEEECchhh
Confidence 999888888899999999999987653222 22233332222 46789999999976
|
|
| >PTZ00258 GTP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.3e-12 Score=97.82 Aligned_cols=82 Identities=21% Similarity=0.306 Sum_probs=56.2
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcCCCCCC--CCCccceeEEEEEeC-----------------CEEEEEEecCCchhh
Q 030429 10 KQEMELSLIGLQNAGKTSLVNTIATGGYSED--MIPTVGFNMRKVTKG-----------------NVTIKLWDLGGQRRF 70 (177)
Q Consensus 10 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~--~~~t~~~~~~~~~~~-----------------~~~~~~~D~~g~~~~ 70 (177)
...++|+++|.||||||||+|++.+...... ...|.......+... ..++.++|+||-...
T Consensus 19 ~~~~kvgIVG~PNvGKSTLfnaLt~~~~~v~n~pftTi~p~~g~v~~~d~r~~~l~~~~~~~~~~~aqi~lvDtpGLv~g 98 (390)
T PTZ00258 19 GNNLKMGIVGLPNVGKSTTFNALCKQQVPAENFPFCTIDPNTARVNVPDERFDWLCKHFKPKSIVPAQLDITDIAGLVKG 98 (390)
T ss_pred CCCcEEEEECCCCCChHHHHHHHhcCcccccCCCCCcccceEEEEecccchhhHHHHHcCCcccCCCCeEEEECCCcCcC
Confidence 4568999999999999999999986654332 223444444444332 345899999994321
Q ss_pred -------HHhHHHHhcCCCEEEEEEeCC
Q 030429 71 -------RTMWERYCRGVSAILYVVDAA 91 (177)
Q Consensus 71 -------~~~~~~~~~~~d~~i~v~d~~ 91 (177)
.......++.+|++++|+|+.
T Consensus 99 a~~g~gLg~~fL~~Ir~aD~il~VVd~f 126 (390)
T PTZ00258 99 ASEGEGLGNAFLSHIRAVDGIYHVVRAF 126 (390)
T ss_pred CcchhHHHHHHHHHHHHCCEEEEEEeCC
Confidence 112233577899999999984
|
|
| >PLN00116 translation elongation factor EF-2 subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.49 E-value=3.8e-13 Score=110.29 Aligned_cols=114 Identities=21% Similarity=0.189 Sum_probs=79.5
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHhcCCCC--C---------C-------CCCccceeEEEEEe----------------
Q 030429 9 FKQEMELSLIGLQNAGKTSLVNTIATGGYS--E---------D-------MIPTVGFNMRKVTK---------------- 54 (177)
Q Consensus 9 ~~~~~~i~i~G~~~~GKSsli~~l~~~~~~--~---------~-------~~~t~~~~~~~~~~---------------- 54 (177)
..+-.+|+++|+.++|||||+++|+...-. . + ...|+......+..
T Consensus 16 ~~~Irni~iiGhvd~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (843)
T PLN00116 16 KHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDESLKDFKGERDG 95 (843)
T ss_pred ccCccEEEEEcCCCCCHHHHHHHHHHhcCCcccccCCceeeccCcHHHHHhCCceecceeEEEeecccccccccccccCC
Confidence 445679999999999999999999843210 0 0 11111111111211
Q ss_pred CCEEEEEEecCCchhhHHhHHHHhcCCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcc
Q 030429 55 GNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKS 127 (177)
Q Consensus 55 ~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~ 127 (177)
.+..++++||||+.+|.......+..+|++++|+|+...-.... ...+..... .++|+++++||+|..
T Consensus 96 ~~~~inliDtPGh~dF~~e~~~al~~~D~ailVvda~~Gv~~~t-~~~~~~~~~----~~~p~i~~iNK~D~~ 163 (843)
T PLN00116 96 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQT-ETVLRQALG----ERIRPVLTVNKMDRC 163 (843)
T ss_pred CceEEEEECCCCHHHHHHHHHHHHhhcCEEEEEEECCCCCcccH-HHHHHHHHH----CCCCEEEEEECCccc
Confidence 36788999999999999888888999999999999976543332 223333333 378999999999987
|
|
| >COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.49 E-value=9.5e-13 Score=93.21 Aligned_cols=169 Identities=18% Similarity=0.129 Sum_probs=109.4
Q ss_pred CceeecccccceeEEEEEcCCCCCHHHHHHHHhcC------C----C--------CCCCCCccceeEEEEEeCCEEEEEE
Q 030429 1 MYLHISLFFKQEMELSLIGLQNAGKTSLVNTIATG------G----Y--------SEDMIPTVGFNMRKVTKGNVTIKLW 62 (177)
Q Consensus 1 m~~~~~~~~~~~~~i~i~G~~~~GKSsli~~l~~~------~----~--------~~~~~~t~~~~~~~~~~~~~~~~~~ 62 (177)
|.+...--.+..+||+.+|.-..|||||..++..- . + .....-|+......++..+..+..+
T Consensus 1 mak~kf~r~kphVNigtiGHvdHGKTTLtaAit~~la~~~~~~~~~y~~id~aPeEk~rGITIntahveyet~~rhyahV 80 (394)
T COG0050 1 MAKEKFERTKPHVNVGTIGHVDHGKTTLTAAITTVLAKKGGAEAKAYDQIDNAPEEKARGITINTAHVEYETANRHYAHV 80 (394)
T ss_pred CchhhhcCCCCeeEEEEeccccCchhhHHHHHHHHHHhhccccccchhhhccCchHhhcCceeccceeEEecCCceEEec
Confidence 44444455677899999999999999998888620 0 1 1112223434444466678888999
Q ss_pred ecCCchhhHHhHHHHhcCCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCc-EEEEeeCCCcccccCH-----HHHH
Q 030429 63 DLGGQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIP-LLVLGNKIDKSEALSK-----QALV 136 (177)
Q Consensus 63 D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-~iiv~nK~D~~~~~~~-----~~~~ 136 (177)
|+||+.+|-.-+.....++|.+|+|+.++|...-+. +..+.-..+ -..| +++++||+|+.++.+. .++.
T Consensus 81 DcPGHaDYvKNMItgAaqmDgAILVVsA~dGpmPqT-rEHiLlarq----vGvp~ivvflnK~Dmvdd~ellelVemEvr 155 (394)
T COG0050 81 DCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQT-REHILLARQ----VGVPYIVVFLNKVDMVDDEELLELVEMEVR 155 (394)
T ss_pred cCCChHHHHHHHhhhHHhcCccEEEEEcCCCCCCcc-hhhhhhhhh----cCCcEEEEEEecccccCcHHHHHHHHHHHH
Confidence 999999998777777778999999999988543322 222222212 2454 6777899999885443 3444
Q ss_pred HHhCcccccCCceeEEEeeecCC-C-------ChHHHHHHHHHHhh
Q 030429 137 DQLGLESITDREVCCYMISCKDS-I-------NIDAVIDWLIKHSK 174 (177)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~Sa~~~-~-------~i~~l~~~l~~~~~ 174 (177)
+-+....+.....|++.-||..- + .|.+|++.+.+++.
T Consensus 156 eLLs~y~f~gd~~Pii~gSal~ale~~~~~~~~i~eLm~avd~yip 201 (394)
T COG0050 156 ELLSEYGFPGDDTPIIRGSALKALEGDAKWEAKIEELMDAVDSYIP 201 (394)
T ss_pred HHHHHcCCCCCCcceeechhhhhhcCCcchHHHHHHHHHHHHhcCC
Confidence 44544555555667887777532 2 35667766666543
|
|
| >TIGR00073 hypB hydrogenase accessory protein HypB | Back alignment and domain information |
|---|
Probab=99.49 E-value=1e-13 Score=96.45 Aligned_cols=57 Identities=19% Similarity=0.184 Sum_probs=40.8
Q ss_pred CCcEEEEeeCCCccccc--CHHHHHHHhCcccccCCceeEEEeeecCCCChHHHHHHHHHHh
Q 030429 114 GIPLLVLGNKIDKSEAL--SKQALVDQLGLESITDREVCCYMISCKDSINIDAVIDWLIKHS 173 (177)
Q Consensus 114 ~~~~iiv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~ 173 (177)
..|.++++||+|+.+.. ...+..+.+... .+..+++++||+++.|++++++++.+..
T Consensus 148 ~~a~iiv~NK~Dl~~~~~~~~~~~~~~l~~~---~~~~~i~~~Sa~~g~gv~~l~~~i~~~~ 206 (207)
T TIGR00073 148 KEADLIVINKADLAEAVGFDVEKMKADAKKI---NPEAEIILMSLKTGEGLDEWLEFLEGQV 206 (207)
T ss_pred hhCCEEEEEHHHccccchhhHHHHHHHHHHh---CCCCCEEEEECCCCCCHHHHHHHHHHhh
Confidence 45789999999997532 223333333221 2346899999999999999999998754
|
HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases. |
| >PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.6e-13 Score=96.13 Aligned_cols=152 Identities=15% Similarity=0.190 Sum_probs=90.8
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcC----------------------CCCCC------CCCccceeEEEEE--------
Q 030429 10 KQEMELSLIGLQNAGKTSLVNTIATG----------------------GYSED------MIPTVGFNMRKVT-------- 53 (177)
Q Consensus 10 ~~~~~i~i~G~~~~GKSsli~~l~~~----------------------~~~~~------~~~t~~~~~~~~~-------- 53 (177)
.+...|+|.|+||+|||||++.|... ..-.+ .....+.-.+...
T Consensus 27 g~a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSSp~tGGAlLGDRiRM~~~~~d~~vfIRS~atRG~lGGl 106 (266)
T PF03308_consen 27 GRAHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDPSSPFTGGALLGDRIRMQELSRDPGVFIRSMATRGSLGGL 106 (266)
T ss_dssp T-SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGGGCC---SS--GGGCHHHHTSTTEEEEEE---SSHHHH
T ss_pred CCceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCCCCCCCcccccHHHhcCcCCCCCEEEeecCcCCCCCCc
Confidence 35689999999999999999999720 00000 0011122222221
Q ss_pred ------------eCCEEEEEEecCCchhhHHhHHHHhcCCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEe
Q 030429 54 ------------KGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLG 121 (177)
Q Consensus 54 ------------~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~ 121 (177)
..++++.+++|.|-.+..... ..-+|.+++|......+..+.++.-+.++ .=++|+
T Consensus 107 s~~t~~~v~ll~aaG~D~IiiETVGvGQsE~~I---~~~aD~~v~v~~Pg~GD~iQ~~KaGimEi---------aDi~vV 174 (266)
T PF03308_consen 107 SRATRDAVRLLDAAGFDVIIIETVGVGQSEVDI---ADMADTVVLVLVPGLGDEIQAIKAGIMEI---------ADIFVV 174 (266)
T ss_dssp HHHHHHHHHHHHHTT-SEEEEEEESSSTHHHHH---HTTSSEEEEEEESSTCCCCCTB-TTHHHH----------SEEEE
T ss_pred cHhHHHHHHHHHHcCCCEEEEeCCCCCccHHHH---HHhcCeEEEEecCCCccHHHHHhhhhhhh---------ccEEEE
Confidence 135789999999865554333 44489999999887666666555544444 337999
Q ss_pred eCCCcccccC-HHHHHHHhCcccccCC--ceeEEEeeecCCCChHHHHHHHHHHh
Q 030429 122 NKIDKSEALS-KQALVDQLGLESITDR--EVCCYMISCKDSINIDAVIDWLIKHS 173 (177)
Q Consensus 122 nK~D~~~~~~-~~~~~~~~~~~~~~~~--~~~~~~~Sa~~~~~i~~l~~~l~~~~ 173 (177)
||+|....+. ..++...+........ ..+++.+||.++.|+++|++.|.+.-
T Consensus 175 NKaD~~gA~~~~~~l~~~l~l~~~~~~~W~ppV~~tsA~~~~Gi~eL~~~i~~~~ 229 (266)
T PF03308_consen 175 NKADRPGADRTVRDLRSMLHLLREREDGWRPPVLKTSALEGEGIDELWEAIDEHR 229 (266)
T ss_dssp E--SHHHHHHHHHHHHHHHHHCSTSCTSB--EEEEEBTTTTBSHHHHHHHHHHHH
T ss_pred eCCChHHHHHHHHHHHHHHhhccccccCCCCCEEEEEeCCCCCHHHHHHHHHHHH
Confidence 9999655432 2333333322211111 24899999999999999999998753
|
In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A. |
| >PTZ00416 elongation factor 2; Provisional | Back alignment and domain information |
|---|
Probab=99.49 E-value=4.7e-13 Score=109.58 Aligned_cols=113 Identities=23% Similarity=0.225 Sum_probs=78.0
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcCCC--CC---------C-------CCCccceeEEEEEeC----------CEEEEE
Q 030429 10 KQEMELSLIGLQNAGKTSLVNTIATGGY--SE---------D-------MIPTVGFNMRKVTKG----------NVTIKL 61 (177)
Q Consensus 10 ~~~~~i~i~G~~~~GKSsli~~l~~~~~--~~---------~-------~~~t~~~~~~~~~~~----------~~~~~~ 61 (177)
++..+|+++|+.++|||||+++|+...- .. + ...|+.......... +..+++
T Consensus 17 ~~irni~iiGh~d~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~i~l 96 (836)
T PTZ00416 17 DQIRNMSVIAHVDHGKSTLTDSLVCKAGIISSKNAGDARFTDTRADEQERGITIKSTGISLYYEHDLEDGDDKQPFLINL 96 (836)
T ss_pred cCcCEEEEECCCCCCHHHHHHHHHHhcCCcccccCCceeecccchhhHhhcceeeccceEEEeecccccccCCCceEEEE
Confidence 4456999999999999999999985211 00 0 001111111112221 577999
Q ss_pred EecCCchhhHHhHHHHhcCCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcc
Q 030429 62 WDLGGQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKS 127 (177)
Q Consensus 62 ~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~ 127 (177)
+||||+.+|.......+..+|++++|+|+.+.-.... ...+..+.. .++|+++++||+|+.
T Consensus 97 iDtPG~~~f~~~~~~al~~~D~ailVvda~~g~~~~t-~~~~~~~~~----~~~p~iv~iNK~D~~ 157 (836)
T PTZ00416 97 IDSPGHVDFSSEVTAALRVTDGALVVVDCVEGVCVQT-ETVLRQALQ----ERIRPVLFINKVDRA 157 (836)
T ss_pred EcCCCHHhHHHHHHHHHhcCCeEEEEEECCCCcCccH-HHHHHHHHH----cCCCEEEEEEChhhh
Confidence 9999999998888888999999999999977533332 333444433 368999999999987
|
|
| >KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.47 E-value=3.2e-13 Score=105.59 Aligned_cols=158 Identities=18% Similarity=0.195 Sum_probs=103.9
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCCCCCC----CccceeEEEEE----------------eCCEEEEEEecCCchhhH
Q 030429 12 EMELSLIGLQNAGKTSLVNTIATGGYSEDMI----PTVGFNMRKVT----------------KGNVTIKLWDLGGQRRFR 71 (177)
Q Consensus 12 ~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~----~t~~~~~~~~~----------------~~~~~~~~~D~~g~~~~~ 71 (177)
..-+||+|+..+|||-|+..+.+.++....- +.++-++.... .+-.-+.++||||++.|.
T Consensus 475 SPIcCilGHVDTGKTKlld~ir~tNVqegeaggitqqIgAt~fp~~ni~e~tk~~~~~~K~~~kvPg~lvIdtpghEsFt 554 (1064)
T KOG1144|consen 475 SPICCILGHVDTGKTKLLDKIRGTNVQEGEAGGITQQIGATYFPAENIREKTKELKKDAKKRLKVPGLLVIDTPGHESFT 554 (1064)
T ss_pred CceEEEeecccccchHHHHHhhccccccccccceeeeccccccchHHHHHHHHHHHhhhhhhcCCCeeEEecCCCchhhh
Confidence 4568999999999999999998655433322 22222222211 122346788999999999
Q ss_pred HhHHHHhcCCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccC------H------------H
Q 030429 72 TMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALS------K------------Q 133 (177)
Q Consensus 72 ~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~------~------------~ 133 (177)
++......-||.+|+|+|+... +.......+...+.++.|+|+++||+|....+. . .
T Consensus 555 nlRsrgsslC~~aIlvvdImhG-----lepqtiESi~lLR~rktpFivALNKiDRLYgwk~~p~~~i~~~lkkQ~k~v~~ 629 (1064)
T KOG1144|consen 555 NLRSRGSSLCDLAILVVDIMHG-----LEPQTIESINLLRMRKTPFIVALNKIDRLYGWKSCPNAPIVEALKKQKKDVQN 629 (1064)
T ss_pred hhhhccccccceEEEEeehhcc-----CCcchhHHHHHHHhcCCCeEEeehhhhhhcccccCCCchHHHHHHHhhHHHHH
Confidence 9988888899999999999543 211112222223336899999999999754211 0 1
Q ss_pred HHHHHh----------Cc---cccc----CCceeEEEeeecCCCChHHHHHHHHHHhh
Q 030429 134 ALVDQL----------GL---ESIT----DREVCCYMISCKDSINIDAVIDWLIKHSK 174 (177)
Q Consensus 134 ~~~~~~----------~~---~~~~----~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~ 174 (177)
++..++ ++ .++. ...+.++++||..|+||.+|+-+|++...
T Consensus 630 EF~~R~~~ii~efaEQgLN~~LyykNk~~~~~vsiVPTSA~sGeGipdLl~llv~ltQ 687 (1064)
T KOG1144|consen 630 EFKERLNNIIVEFAEQGLNAELYYKNKEMGETVSIVPTSAISGEGIPDLLLLLVQLTQ 687 (1064)
T ss_pred HHHHHHHHHHHHHHHcccchhheeecccccceEEeeecccccCCCcHHHHHHHHHHHH
Confidence 111111 11 1111 13578899999999999999999988654
|
|
| >PF05783 DLIC: Dynein light intermediate chain (DLIC); InterPro: IPR022780 This entry consists of several eukaryotic dynein light intermediate chain proteins | Back alignment and domain information |
|---|
Probab=99.47 E-value=8.9e-13 Score=100.90 Aligned_cols=165 Identities=18% Similarity=0.231 Sum_probs=106.4
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEeC----CEEEEEEecCCchhhHHhHHHHhcC----C
Q 030429 10 KQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTKG----NVTIKLWDLGGQRRFRTMWERYCRG----V 81 (177)
Q Consensus 10 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~----~~~~~~~D~~g~~~~~~~~~~~~~~----~ 81 (177)
...-.|+|+|..++|||||+.+|.+. .........++.+..+..+ -.++++|.+.|...+..++...+.. -
T Consensus 23 ~~~k~vlvlG~~~~GKttli~~L~~~-e~~~~~~aLeYty~~v~d~~~dd~~rl~vw~L~g~~~~~~LLk~~lt~~~l~~ 101 (472)
T PF05783_consen 23 PSEKSVLVLGDKGSGKTTLIARLQGI-EDPKKGLALEYTYLDVKDEDRDDLARLNVWELDGDPSHSDLLKFALTPENLPN 101 (472)
T ss_pred CCCceEEEEeCCCCchHHHHHHhhcc-CCCCCCcccceEEEeeccCcCCcCceeeEEEcCCCcchHhHhcccCCcccccc
Confidence 34568999999999999999998643 2222333344444444322 2578999999877777777665553 2
Q ss_pred CEEEEEEeCCCCCCHH-HHHHHHHHH----------------------------HcC---C-----------C-------
Q 030429 82 SAILYVVDAADRDSVP-IARSELHEL----------------------------LMK---P-----------S------- 111 (177)
Q Consensus 82 d~~i~v~d~~~~~~~~-~~~~~~~~~----------------------------~~~---~-----------~------- 111 (177)
-++++|+|++.|+.+- .+..|+..+ .+. . .
T Consensus 102 t~vvIvlDlS~PW~~~esL~~W~~vl~~~i~~L~~~~e~~~e~~~kl~~~~q~Y~ep~~~~~~~s~~~~~~~~~~~~~~~ 181 (472)
T PF05783_consen 102 TLVVIVLDLSKPWNIMESLEKWLSVLREHIEKLKSDPEEREELRQKLERQWQEYVEPGDSSDSGSPNRRSPSSSSSDDES 181 (472)
T ss_pred eEEEEEecCCChHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHhhhccccccccCccccccccccccccc
Confidence 5899999999886543 222222210 000 0 0
Q ss_pred ------------CCCCcEEEEeeCCCcccccCH--------HHHHHHhCcccccCCceeEEEeeecCCCChHHHHHHHHH
Q 030429 112 ------------LSGIPLLVLGNKIDKSEALSK--------QALVDQLGLESITDREVCCYMISCKDSINIDAVIDWLIK 171 (177)
Q Consensus 112 ------------~~~~~~iiv~nK~D~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~ 171 (177)
.-++|++||.+|+|.....+. -.+..++-+......++..+.||++...+++.|...|.+
T Consensus 182 ~~lpl~~g~l~~nlGipi~VV~tksD~~~~Lek~~~~~~e~~DfIqq~LR~~cL~yGAsL~yts~~~~~n~~~L~~yi~h 261 (472)
T PF05783_consen 182 VLLPLGEGVLTENLGIPIVVVCTKSDKIETLEKETDWKEEHFDFIQQYLRTFCLKYGASLIYTSVKEEKNLDLLYKYILH 261 (472)
T ss_pred ccCCCCCcccccccCcceEEEEecccHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCeEEEeeccccccHHHHHHHHHH
Confidence 014799999999997542111 112222223334445678999999999999999999988
Q ss_pred Hhhh
Q 030429 172 HSKT 175 (177)
Q Consensus 172 ~~~~ 175 (177)
.+..
T Consensus 262 ~l~~ 265 (472)
T PF05783_consen 262 RLYG 265 (472)
T ss_pred Hhcc
Confidence 7754
|
The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin [, ]. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo []. |
| >KOG1486 consensus GTP-binding protein DRG2 (ODN superfamily) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.44 E-value=2e-12 Score=89.76 Aligned_cols=155 Identities=23% Similarity=0.280 Sum_probs=101.8
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcCCCCCC--CCCccceeEEEEEeCCEEEEEEecCCchhhHHhH-------HHHhcC
Q 030429 10 KQEMELSLIGLQNAGKTSLVNTIATGGYSED--MIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTMW-------ERYCRG 80 (177)
Q Consensus 10 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~--~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~-------~~~~~~ 80 (177)
.-..+|+++|.|.+|||||+..+........ ...|.......+.+++..+++.|.||.-...+.- ....+-
T Consensus 60 sGdaRValIGfPSVGKStlLs~iT~T~SeaA~yeFTTLtcIpGvi~y~ga~IQllDLPGIieGAsqgkGRGRQviavArt 139 (364)
T KOG1486|consen 60 SGDARVALIGFPSVGKSTLLSKITSTHSEAASYEFTTLTCIPGVIHYNGANIQLLDLPGIIEGASQGKGRGRQVIAVART 139 (364)
T ss_pred cCCeEEEEecCCCccHHHHHHHhhcchhhhhceeeeEEEeecceEEecCceEEEecCcccccccccCCCCCceEEEEeec
Confidence 3458999999999999999999974332222 2223333334467888999999999954332221 223566
Q ss_pred CCEEEEEEeCCCCCCHH-HHHHHHHHHHcCC-------------------------------------------------
Q 030429 81 VSAILYVVDAADRDSVP-IARSELHELLMKP------------------------------------------------- 110 (177)
Q Consensus 81 ~d~~i~v~d~~~~~~~~-~~~~~~~~~~~~~------------------------------------------------- 110 (177)
+|.+++|.|++..+.-. .+...+..+-...
T Consensus 140 aDlilMvLDatk~e~qr~~le~ELe~vGiRLNk~~Pniy~k~kk~gGi~f~~T~~lT~~~ek~i~~ILheykI~Naevl~ 219 (364)
T KOG1486|consen 140 ADLILMVLDATKSEDQREILEKELEAVGIRLNKRKPNIYFKKKKTGGISFNTTVPLTHCDEKLIYTILHEYKIHNAEVLF 219 (364)
T ss_pred ccEEEEEecCCcchhHHHHHHHHHHHhceeccCCCCCeEEEeeccCCeEEeeeeccccccHHHHHHHHHHHeeccceEEE
Confidence 89999999997533211 1122222111000
Q ss_pred ---------------CCCCCcEEEEeeCCCcccccCHHHHHHHhCcccccCCceeEEEeeecCCCChHHHHHHHHHHhh
Q 030429 111 ---------------SLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCKDSINIDAVIDWLIKHSK 174 (177)
Q Consensus 111 ---------------~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~ 174 (177)
....++++.|.||+|...-++.+.+.++.+ -+-+|+.-..|++.+++.+.+.+.
T Consensus 220 ReD~t~DdfIDvi~gnr~Y~~ClYvYnKID~vs~eevdrlAr~Pn----------svViSC~m~lnld~lle~iWe~l~ 288 (364)
T KOG1486|consen 220 REDCTVDDFIDVIEGNRVYIKCLYVYNKIDQVSIEEVDRLARQPN----------SVVISCNMKLNLDRLLERIWEELN 288 (364)
T ss_pred ecCCChHHHHHHHhccceEEEEEEEeeccceecHHHHHHHhcCCC----------cEEEEeccccCHHHHHHHHHHHhc
Confidence 003468999999999988766655555443 456899999999999999998765
|
|
| >PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another | Back alignment and domain information |
|---|
Probab=99.42 E-value=6.3e-12 Score=84.57 Aligned_cols=63 Identities=19% Similarity=0.162 Sum_probs=42.8
Q ss_pred EEEEEecCCchh----hHHhHHHHhcCCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCC
Q 030429 58 TIKLWDLGGQRR----FRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKI 124 (177)
Q Consensus 58 ~~~~~D~~g~~~----~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~ 124 (177)
.+.++|+||... ....+..+++.+|++++|.+++....-.....+.... .. ....+++|.||+
T Consensus 102 ~~~lvDtPG~~~~~~~~~~~~~~~~~~~d~vi~V~~~~~~~~~~~~~~l~~~~-~~---~~~~~i~V~nk~ 168 (168)
T PF00350_consen 102 NLTLVDTPGLNSTNSEHTEITEEYLPKADVVIFVVDANQDLTESDMEFLKQML-DP---DKSRTIFVLNKA 168 (168)
T ss_dssp SEEEEEEEEBHSSHTTTSHHHHHHHSTTEEEEEEEETTSTGGGHHHHHHHHHH-TT---TCSSEEEEEE-G
T ss_pred ceEEEeCCccccchhhhHHHHHHhhccCCEEEEEeccCcccchHHHHHHHHHh-cC---CCCeEEEEEcCC
Confidence 478999999532 2356777889999999999998865544444333333 33 244589999985
|
Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D .... |
| >COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.41 E-value=1.1e-12 Score=93.16 Aligned_cols=108 Identities=17% Similarity=0.145 Sum_probs=69.9
Q ss_pred CCEEEEEEecCCchhhHHhHHHHhcCCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccC-HH
Q 030429 55 GNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALS-KQ 133 (177)
Q Consensus 55 ~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~-~~ 133 (177)
.++++.+++|.|-.+....... -+|.+++|.-..-.+..+.++.-+.++ -=++|+||.|....+. ..
T Consensus 142 aG~DvIIVETVGvGQsev~I~~---~aDt~~~v~~pg~GD~~Q~iK~GimEi---------aDi~vINKaD~~~A~~a~r 209 (323)
T COG1703 142 AGYDVIIVETVGVGQSEVDIAN---MADTFLVVMIPGAGDDLQGIKAGIMEI---------ADIIVINKADRKGAEKAAR 209 (323)
T ss_pred cCCCEEEEEecCCCcchhHHhh---hcceEEEEecCCCCcHHHHHHhhhhhh---------hheeeEeccChhhHHHHHH
Confidence 3578899999986666543333 388888888765555555555444444 2379999999654322 22
Q ss_pred HHHHHhCccc--ccC--CceeEEEeeecCCCChHHHHHHHHHHhh
Q 030429 134 ALVDQLGLES--ITD--REVCCYMISCKDSINIDAVIDWLIKHSK 174 (177)
Q Consensus 134 ~~~~~~~~~~--~~~--~~~~~~~~Sa~~~~~i~~l~~~l~~~~~ 174 (177)
++...+.... ... -..+++.+||..|+|+++|++.+.+...
T Consensus 210 ~l~~al~~~~~~~~~~~W~ppv~~t~A~~g~Gi~~L~~ai~~h~~ 254 (323)
T COG1703 210 ELRSALDLLREVWRENGWRPPVVTTSALEGEGIDELWDAIEDHRK 254 (323)
T ss_pred HHHHHHHhhcccccccCCCCceeEeeeccCCCHHHHHHHHHHHHH
Confidence 3333333221 111 1347899999999999999999988654
|
|
| >PRK09601 GTP-binding protein YchF; Reviewed | Back alignment and domain information |
|---|
Probab=99.38 E-value=2e-11 Score=90.55 Aligned_cols=79 Identities=27% Similarity=0.358 Sum_probs=53.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCC--CCCccceeEEEEEeCC-----------------EEEEEEecCCchhh---
Q 030429 13 MELSLIGLQNAGKTSLVNTIATGGYSED--MIPTVGFNMRKVTKGN-----------------VTIKLWDLGGQRRF--- 70 (177)
Q Consensus 13 ~~i~i~G~~~~GKSsli~~l~~~~~~~~--~~~t~~~~~~~~~~~~-----------------~~~~~~D~~g~~~~--- 70 (177)
++|+++|.|++|||||+|++++...... ...|.......+...+ .++.++|+||-...
T Consensus 3 ~~vgIVG~PNvGKSTLfnaLt~~~~~v~nypftTi~p~~G~~~v~d~r~~~l~~~~~p~~~~~a~i~lvD~pGL~~~a~~ 82 (364)
T PRK09601 3 LKCGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGVVPVPDPRLDKLAEIVKPKKIVPATIEFVDIAGLVKGASK 82 (364)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCeecccccccccceEEEEEeccccchhhHHhcCCccccCceEEEEECCCCCCCCCh
Confidence 6899999999999999999997663222 3334444444433222 35899999994321
Q ss_pred -HH---hHHHHhcCCCEEEEEEeCC
Q 030429 71 -RT---MWERYCRGVSAILYVVDAA 91 (177)
Q Consensus 71 -~~---~~~~~~~~~d~~i~v~d~~ 91 (177)
.. .....++.+|++++|+|+.
T Consensus 83 g~glg~~fL~~i~~aD~li~VVd~f 107 (364)
T PRK09601 83 GEGLGNQFLANIREVDAIVHVVRCF 107 (364)
T ss_pred HHHHHHHHHHHHHhCCEEEEEEeCC
Confidence 11 2223467899999999985
|
|
| >smart00010 small_GTPase Small GTPase of the Ras superfamily; ill-defined subfamily | Back alignment and domain information |
|---|
Probab=99.37 E-value=1.3e-12 Score=83.38 Aligned_cols=114 Identities=20% Similarity=0.176 Sum_probs=76.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCCC-CccceeEEEEEeCCEEEEEEecCCchhhHHhHHHHhcCCCEEEEEEeCC
Q 030429 13 MELSLIGLQNAGKTSLVNTIATGGYSEDMI-PTVGFNMRKVTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAA 91 (177)
Q Consensus 13 ~~i~i~G~~~~GKSsli~~l~~~~~~~~~~-~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~ 91 (177)
+|++++|..|+|||+|+.++....+...+. ++.+ +........+.++.+++||+.+
T Consensus 1 ~kvv~~G~~gvGKt~l~~~~~~~~~~~~~~~~t~~-----------------------~~~~~~~~~~s~~~~~~v~~~~ 57 (124)
T smart00010 1 FKVVGIGDSGVGKVGKSARFVQFPFDYVPTVFTIG-----------------------IDVYDPTSYESFDVVLQCWRVD 57 (124)
T ss_pred CEEEEECCCChhHHHHHHHHhcCCccccCceehhh-----------------------hhhccccccCCCCEEEEEEEcc
Confidence 489999999999999999998666654433 3333 2222234566789999999999
Q ss_pred CCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccCHHHHHHHhCcccccCCceeEEEeeecCCCChH
Q 030429 92 DRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCKDSINID 163 (177)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 163 (177)
+..+++.. |...+... ...+.|.++++||.|+.+... +.+... ..++++|++++.|+.
T Consensus 58 ~~~s~~~~--~~~~i~~~-~k~dl~~~~~~nk~dl~~~~~---~~~~~~--------~~~~~~s~~~~~~~~ 115 (124)
T smart00010 58 DRDSADNK--NVPEVLVG-NKSDLPILVGGNRDVLEEERQ---VATEEG--------LEFAETSAKTPEEGE 115 (124)
T ss_pred CHHHHHHH--hHHHHHhc-CCCCCcEEEEeechhhHhhCc---CCHHHH--------HHHHHHhCCCcchhh
Confidence 88887655 55444433 234688999999999844221 111111 135678899998874
|
SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily. |
| >KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.37 E-value=2.1e-11 Score=93.41 Aligned_cols=157 Identities=18% Similarity=0.190 Sum_probs=106.7
Q ss_pred ecccccceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccc----eeEEEEEeCCEEEEEEecCCchhhHHhHHHHhcC
Q 030429 5 ISLFFKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVG----FNMRKVTKGNVTIKLWDLGGQRRFRTMWERYCRG 80 (177)
Q Consensus 5 ~~~~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~----~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~ 80 (177)
..-..++-++..++|+.++|||.++++++++.+......+.. ++...+......+.+-|.+-. ........- ..
T Consensus 418 ~~~~~R~Vf~C~V~G~k~~GKs~lL~sflgr~~~~~~~~~~~~~~avn~v~~~g~~k~LiL~ei~~~-~~~~l~~ke-~~ 495 (625)
T KOG1707|consen 418 KKQTDRKVFQCFVVGPKNCGKSALLQSFLGRSMSDNNTGTTKPRYAVNSVEVKGQQKYLILREIGED-DQDFLTSKE-AA 495 (625)
T ss_pred cccccceeeeEEEEcCCcCchHHHHHHHhccccccccccCCCCceeeeeeeeccccceEEEeecCcc-ccccccCcc-ce
Confidence 344556779999999999999999999998877664333222 222233334455666677653 111111111 56
Q ss_pred CCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccc-----CHHHHHHHhCcccccCCceeEEEee
Q 030429 81 VSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEAL-----SKQALVDQLGLESITDREVCCYMIS 155 (177)
Q Consensus 81 ~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~S 155 (177)
||+++++||.+++.++..+...+...... ...|+++|++|+|+.+.. ...+++.+++... -...|
T Consensus 496 cDv~~~~YDsS~p~sf~~~a~v~~~~~~~---~~~Pc~~va~K~dlDe~~Q~~~iqpde~~~~~~i~~-------P~~~S 565 (625)
T KOG1707|consen 496 CDVACLVYDSSNPRSFEYLAEVYNKYFDL---YKIPCLMVATKADLDEVPQRYSIQPDEFCRQLGLPP-------PIHIS 565 (625)
T ss_pred eeeEEEecccCCchHHHHHHHHHHHhhhc---cCCceEEEeeccccchhhhccCCChHHHHHhcCCCC-------Ceeec
Confidence 99999999999999999887777665444 579999999999997643 2366666666542 34456
Q ss_pred ecCCCChHHHHHHHHHHhh
Q 030429 156 CKDSINIDAVIDWLIKHSK 174 (177)
Q Consensus 156 a~~~~~i~~l~~~l~~~~~ 174 (177)
.+.... .++|..|..++.
T Consensus 566 ~~~~~s-~~lf~kL~~~A~ 583 (625)
T KOG1707|consen 566 SKTLSS-NELFIKLATMAQ 583 (625)
T ss_pred cCCCCC-chHHHHHHHhhh
Confidence 554333 899999988764
|
|
| >COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.37 E-value=2.2e-12 Score=102.75 Aligned_cols=127 Identities=22% Similarity=0.236 Sum_probs=89.2
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHhcC--------CCC------------CCCCCccceeEEEEEeCC-EEEEEEecCCc
Q 030429 9 FKQEMELSLIGLQNAGKTSLVNTIATG--------GYS------------EDMIPTVGFNMRKVTKGN-VTIKLWDLGGQ 67 (177)
Q Consensus 9 ~~~~~~i~i~G~~~~GKSsli~~l~~~--------~~~------------~~~~~t~~~~~~~~~~~~-~~~~~~D~~g~ 67 (177)
..+.-||+++|+-.+|||||..+++-. ... ....-|+.........++ +.++++|||||
T Consensus 7 ~~~~RNigI~aHidaGKTTltE~lL~~tG~i~k~G~v~~g~~~~D~~e~EqeRGITI~saa~s~~~~~~~~iNlIDTPGH 86 (697)
T COG0480 7 LERIRNIGIVAHIDAGKTTLTERILFYTGIISKIGEVHDGAATMDWMEQEQERGITITSAATTLFWKGDYRINLIDTPGH 86 (697)
T ss_pred cccceEEEEEeccCCChHHHHHHHHHHcCCcCCCccccCCCccCCCcHHHHhcCCEEeeeeeEEEEcCceEEEEeCCCCc
Confidence 566789999999999999999999821 011 011123333333455674 99999999999
Q ss_pred hhhHHhHHHHhcCCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccC---HHHHHHHhC
Q 030429 68 RRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALS---KQALVDQLG 140 (177)
Q Consensus 68 ~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~---~~~~~~~~~ 140 (177)
-+|.......++-+|++++|+|+...-... ....|..... .++|.++++||+|....+. .+++...+.
T Consensus 87 VDFt~EV~rslrvlDgavvVvdaveGV~~Q-TEtv~rqa~~----~~vp~i~fiNKmDR~~a~~~~~~~~l~~~l~ 157 (697)
T COG0480 87 VDFTIEVERSLRVLDGAVVVVDAVEGVEPQ-TETVWRQADK----YGVPRILFVNKMDRLGADFYLVVEQLKERLG 157 (697)
T ss_pred cccHHHHHHHHHhhcceEEEEECCCCeeec-HHHHHHHHhh----cCCCeEEEEECccccccChhhhHHHHHHHhC
Confidence 999999999999999999999996643222 2333344433 4899999999999865432 344444443
|
|
| >PRK10463 hydrogenase nickel incorporation protein HypB; Provisional | Back alignment and domain information |
|---|
Probab=99.37 E-value=1.4e-12 Score=93.69 Aligned_cols=57 Identities=21% Similarity=0.273 Sum_probs=41.6
Q ss_pred CCcEEEEeeCCCccccc--CHHHHHHHhCcccccCCceeEEEeeecCCCChHHHHHHHHHHh
Q 030429 114 GIPLLVLGNKIDKSEAL--SKQALVDQLGLESITDREVCCYMISCKDSINIDAVIDWLIKHS 173 (177)
Q Consensus 114 ~~~~iiv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~ 173 (177)
..+-++|+||+|+.+.. +.+...+.+.. ..+..+++++|+++|+|++++.++|.+..
T Consensus 230 ~~ADIVVLNKiDLl~~~~~dle~~~~~lr~---lnp~a~I~~vSA~tGeGld~L~~~L~~~~ 288 (290)
T PRK10463 230 AAASLMLLNKVDLLPYLNFDVEKCIACARE---VNPEIEIILISATSGEGMDQWLNWLETQR 288 (290)
T ss_pred hcCcEEEEEhHHcCcccHHHHHHHHHHHHh---hCCCCcEEEEECCCCCCHHHHHHHHHHhh
Confidence 35679999999997632 33444444432 23456899999999999999999998753
|
|
| >TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains | Back alignment and domain information |
|---|
Probab=99.37 E-value=3.5e-11 Score=94.32 Aligned_cols=118 Identities=14% Similarity=0.119 Sum_probs=74.2
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhcCCCC-CCC--CCccceeEEEEEeCCEEEEEEecCCchhhH-------Hh---HHHH
Q 030429 11 QEMELSLIGLQNAGKTSLVNTIATGGYS-EDM--IPTVGFNMRKVTKGNVTIKLWDLGGQRRFR-------TM---WERY 77 (177)
Q Consensus 11 ~~~~i~i~G~~~~GKSsli~~l~~~~~~-~~~--~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~-------~~---~~~~ 77 (177)
..++|+++|.+|+||||++|++++.... ... ..|..........++..+.++||||-.... .. ...+
T Consensus 117 fslrIvLVGKTGVGKSSLINSILGekvf~vss~~~~TTr~~ei~~~idG~~L~VIDTPGL~dt~~dq~~neeILk~Ik~~ 196 (763)
T TIGR00993 117 FSLNILVLGKSGVGKSATINSIFGEVKFSTDAFGMGTTSVQEIEGLVQGVKIRVIDTPGLKSSASDQSKNEKILSSVKKF 196 (763)
T ss_pred cceEEEEECCCCCCHHHHHHHHhccccccccCCCCCceEEEEEEEEECCceEEEEECCCCCccccchHHHHHHHHHHHHH
Confidence 4578999999999999999999976532 221 233333333334567889999999954321 11 1123
Q ss_pred hc--CCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCC-CCcEEEEeeCCCccc
Q 030429 78 CR--GVSAILYVVDAADRDSVPIARSELHELLMKPSLS-GIPLLVLGNKIDKSE 128 (177)
Q Consensus 78 ~~--~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~-~~~~iiv~nK~D~~~ 128 (177)
+. ..|++++|..++......+....+..+...++.. -..+|||.|+.|..+
T Consensus 197 Lsk~gpDVVLlV~RLd~~~~D~eD~~aLr~Iq~lFG~~Iwk~tIVVFThgD~lp 250 (763)
T TIGR00993 197 IKKNPPDIVLYVDRLDMQTRDSNDLPLLRTITDVLGPSIWFNAIVTLTHAASAP 250 (763)
T ss_pred HhcCCCCEEEEEEeCCCccccHHHHHHHHHHHHHhCHHhHcCEEEEEeCCccCC
Confidence 33 4799999998764433323334444443333311 146899999999875
|
The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M. |
| >TIGR00157 ribosome small subunit-dependent GTPase A | Back alignment and domain information |
|---|
Probab=99.37 E-value=3.2e-12 Score=90.92 Aligned_cols=95 Identities=18% Similarity=0.130 Sum_probs=72.3
Q ss_pred hhhHHhHHHHhcCCCEEEEEEeCCCCC-CHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccCHH-HHHHHhCccccc
Q 030429 68 RRFRTMWERYCRGVSAILYVVDAADRD-SVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQ-ALVDQLGLESIT 145 (177)
Q Consensus 68 ~~~~~~~~~~~~~~d~~i~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~-~~~~~~~~~~~~ 145 (177)
+++..+.+.++.++|.+++|+|++++. ++..+..|+..+.. .++|+++|+||+|+.+..... +..+.+.
T Consensus 24 eR~~~L~r~~~~n~D~viiV~d~~~p~~s~~~l~r~l~~~~~----~~i~~vIV~NK~DL~~~~~~~~~~~~~~~----- 94 (245)
T TIGR00157 24 ERKNELTRPIVANIDQIVIVSSAVLPELSLNQLDRFLVVAEA----QNIEPIIVLNKIDLLDDEDMEKEQLDIYR----- 94 (245)
T ss_pred cccceEECcccccCCEEEEEEECCCCCCCHHHHHHHHHHHHH----CCCCEEEEEECcccCCCHHHHHHHHHHHH-----
Confidence 566666777899999999999999887 88888888875533 478999999999997543222 2222222
Q ss_pred CCceeEEEeeecCCCChHHHHHHHHH
Q 030429 146 DREVCCYMISCKDSINIDAVIDWLIK 171 (177)
Q Consensus 146 ~~~~~~~~~Sa~~~~~i~~l~~~l~~ 171 (177)
..+.+++++||++|.|++++++.+..
T Consensus 95 ~~g~~v~~~SAktg~gi~eLf~~l~~ 120 (245)
T TIGR00157 95 NIGYQVLMTSSKNQDGLKELIEALQN 120 (245)
T ss_pred HCCCeEEEEecCCchhHHHHHhhhcC
Confidence 13357999999999999999998764
|
The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option). |
| >PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments [] | Back alignment and domain information |
|---|
Probab=99.37 E-value=3.2e-11 Score=87.26 Aligned_cols=117 Identities=18% Similarity=0.281 Sum_probs=66.2
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCCCCC----------CCccceeEEE--EEeC--CEEEEEEecCCch---------
Q 030429 12 EMELSLIGLQNAGKTSLVNTIATGGYSEDM----------IPTVGFNMRK--VTKG--NVTIKLWDLGGQR--------- 68 (177)
Q Consensus 12 ~~~i~i~G~~~~GKSsli~~l~~~~~~~~~----------~~t~~~~~~~--~~~~--~~~~~~~D~~g~~--------- 68 (177)
.++|+++|++|+|||||+|.|++....... ..+..+.... +..+ .+.+.++||||-.
T Consensus 4 ~fnImVvG~sG~GKTTFIntL~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~l~LtiiDTpGfGd~i~n~~~~ 83 (281)
T PF00735_consen 4 NFNIMVVGESGLGKTTFINTLFNSDIISEDSSIPPPSASISRTLEIEERTVELEENGVKLNLTIIDTPGFGDNIDNSDCW 83 (281)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHTSS---------S------SCEEEEEEEEEEEETCEEEEEEEEEEC-CSSSSTHCHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHHhcccccccccccccccccccccceeeEEEEeccCCcceEEEEEeCCCccccccchhhh
Confidence 589999999999999999999975543321 1122222222 2223 3678899999921
Q ss_pred ---------hhHHhHHHHh---------cCCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccc
Q 030429 69 ---------RFRTMWERYC---------RGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEAL 130 (177)
Q Consensus 69 ---------~~~~~~~~~~---------~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~ 130 (177)
+|......-. ...|+++|.++.+...--+.-...+..+ . ...++|-|+.|+|.....
T Consensus 84 ~~I~~yI~~qf~~~l~eE~~~~R~~~~D~RVH~cLYfI~pt~~~L~~~Di~~mk~L-s----~~vNvIPvIaKaD~lt~~ 158 (281)
T PF00735_consen 84 EPIVDYIESQFDSYLEEESKINRPRIEDTRVHACLYFIPPTGHGLKPLDIEFMKRL-S----KRVNVIPVIAKADTLTPE 158 (281)
T ss_dssp HHHHHHHHHHHHHHHHHHTSSS-TTS----EEEEEEEE-TTSSSS-HHHHHHHHHH-T----TTSEEEEEESTGGGS-HH
T ss_pred HHHHHHHHHHHHHHHHHhhcccccCcCCCCcceEEEEEcCCCccchHHHHHHHHHh-c----ccccEEeEEecccccCHH
Confidence 1111111111 1258999999986643222222333333 2 258899999999987765
Q ss_pred CHH
Q 030429 131 SKQ 133 (177)
Q Consensus 131 ~~~ 133 (177)
+..
T Consensus 159 el~ 161 (281)
T PF00735_consen 159 ELQ 161 (281)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
|
Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C. |
| >TIGR02836 spore_IV_A stage IV sporulation protein A | Back alignment and domain information |
|---|
Probab=99.34 E-value=1.6e-10 Score=86.31 Aligned_cols=150 Identities=17% Similarity=0.197 Sum_probs=83.5
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcC----CCC--------------CCCC---CccceeE---EEEE-----eCCEEEE
Q 030429 10 KQEMELSLIGLQNAGKTSLVNTIATG----GYS--------------EDMI---PTVGFNM---RKVT-----KGNVTIK 60 (177)
Q Consensus 10 ~~~~~i~i~G~~~~GKSsli~~l~~~----~~~--------------~~~~---~t~~~~~---~~~~-----~~~~~~~ 60 (177)
.-.+.|+++|+.++|||||+|+|.+. ... ...+ .|++..+ ..++ .-...+.
T Consensus 15 ~G~IyIGvvGpvrtGKSTfIn~fm~q~VlP~i~~~~~k~Ra~DELpqs~~GktItTTePkfvP~kAvEI~~~~~~~~~Vr 94 (492)
T TIGR02836 15 QGDIYIGVVGPVRTGKSTFIKKFMELLVLPNISNEYDKERAQDELPQSAAGKTIMTTEPKFVPNEAVEININEGTKFKVR 94 (492)
T ss_pred CCcEEEEEEcCCCCChHHHHHHHHhhhccccccchhHHhHHHhccCcCCCCCCcccCCCccccCcceEEeccCCCcccEE
Confidence 34588999999999999999999976 211 1111 2333222 2222 1236788
Q ss_pred EEecCCch-----------h--------------hHH----hHHHHhc-CCCEEEEEE-eCC----CCCCHHHH-HHHHH
Q 030429 61 LWDLGGQR-----------R--------------FRT----MWERYCR-GVSAILYVV-DAA----DRDSVPIA-RSELH 104 (177)
Q Consensus 61 ~~D~~g~~-----------~--------------~~~----~~~~~~~-~~d~~i~v~-d~~----~~~~~~~~-~~~~~ 104 (177)
++||+|-. + |.. -.+..+. ++|..++|. |.+ .++.+... ..++.
T Consensus 95 lIDcvG~~v~GalG~~r~~k~RmV~TPW~d~~IPF~~AAeiGT~kVI~dhstIgivVtTDgsi~dI~Re~y~~aEe~~i~ 174 (492)
T TIGR02836 95 LVDCVGYTVKGALGYMEEDKPRMVSTPWYDYEIPFEEAAEIGTRKVIQEHSTIGVVVTTDGTITDIPREDYVEAEERVIE 174 (492)
T ss_pred EEECCCcccCCCccceeccccccccCCcccccCchhhhhhhhHHHHHHhcCcEEEEEEcCCCccccccccchHHHHHHHH
Confidence 99999911 0 000 0123345 789999998 764 12234443 34444
Q ss_pred HHHcCCCCCCCcEEEEeeCCCcccccCHHHHHHHhCcccccCCceeEEEeeecCC--CChHHHHHH
Q 030429 105 ELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCKDS--INIDAVIDW 168 (177)
Q Consensus 105 ~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~--~~i~~l~~~ 168 (177)
.+.. .++|+++++||+|-...+. .++.+.+.. .+ ..+++++|+.+- ..|..+++.
T Consensus 175 eLk~----~~kPfiivlN~~dp~~~et-~~l~~~l~e-ky---~vpvl~v~c~~l~~~DI~~il~~ 231 (492)
T TIGR02836 175 ELKE----LNKPFIILLNSTHPYHPET-EALRQELEE-KY---DVPVLAMDVESMRESDILSVLEE 231 (492)
T ss_pred HHHh----cCCCEEEEEECcCCCCchh-HHHHHHHHH-Hh---CCceEEEEHHHcCHHHHHHHHHH
Confidence 4433 4899999999999432222 223333311 11 136777777543 334444443
|
A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis. |
| >KOG3887 consensus Predicted small GTPase involved in nuclear protein import [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.33 E-value=1e-11 Score=85.81 Aligned_cols=159 Identities=23% Similarity=0.337 Sum_probs=103.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCCC---CccceeEEEEEeCCEEEEEEecCCchhhHH---hHHHHhcCCCEEEE
Q 030429 13 MELSLIGLQNAGKTSLVNTIATGGYSEDMI---PTVGFNMRKVTKGNVTIKLWDLGGQRRFRT---MWERYCRGVSAILY 86 (177)
Q Consensus 13 ~~i~i~G~~~~GKSsli~~l~~~~~~~~~~---~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~---~~~~~~~~~d~~i~ 86 (177)
.+|+++|...|||||+.....+...+.... +|..+....+...-+.+.+||.|||-.+.. -....++++.++++
T Consensus 28 p~ilLMG~rRsGKsSI~KVVFhkMsPneTlflESTski~~d~is~sfinf~v~dfPGQ~~~Fd~s~D~e~iF~~~gALif 107 (347)
T KOG3887|consen 28 PRILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTSKITRDHISNSFINFQVWDFPGQMDFFDPSFDYEMIFRGVGALIF 107 (347)
T ss_pred ceEEEEeecccCcchhhheeeeccCCCceeEeeccCcccHhhhhhhhcceEEeecCCccccCCCccCHHHHHhccCeEEE
Confidence 569999999999999998887665444422 233333334444558899999999865532 12456889999999
Q ss_pred EEeCCCCCCHHHHHHHHHHHHcC--CCCCCCcEEEEeeCCCcccccCH----HHHH----HHhCcccccCCceeEEEeee
Q 030429 87 VVDAADRDSVPIARSELHELLMK--PSLSGIPLLVLGNKIDKSEALSK----QALV----DQLGLESITDREVCCYMISC 156 (177)
Q Consensus 87 v~d~~~~~~~~~~~~~~~~~~~~--~~~~~~~~iiv~nK~D~~~~~~~----~~~~----~~~~~~~~~~~~~~~~~~Sa 156 (177)
|+|+.+. +.+....+...... .-.+++.+-+.+.|+|...++-+ ..+. +.+.......-.+.++.+|.
T Consensus 108 vIDaQdd--y~eala~L~~~v~raykvNp~in~EVfiHKvDGLsdd~kietqrdI~qr~~d~l~d~gle~v~vsf~LTSI 185 (347)
T KOG3887|consen 108 VIDAQDD--YMEALARLHMTVERAYKVNPNINFEVFIHKVDGLSDDFKIETQRDIHQRTNDELADAGLEKVQVSFYLTSI 185 (347)
T ss_pred EEechHH--HHHHHHHHHHHhhheeecCCCceEEEEEEeccCCchhhhhhhHHHHHHHhhHHHHhhhhccceEEEEEeee
Confidence 9999543 44444444443333 22356778889999997654332 1222 22222222234567888888
Q ss_pred cCCCChHHHHHHHHHHhh
Q 030429 157 KDSINIDAVIDWLIKHSK 174 (177)
Q Consensus 157 ~~~~~i~~l~~~l~~~~~ 174 (177)
.+-. |-|.|..+++.+.
T Consensus 186 yDHS-IfEAFSkvVQkLi 202 (347)
T KOG3887|consen 186 YDHS-IFEAFSKVVQKLI 202 (347)
T ss_pred cchH-HHHHHHHHHHHHh
Confidence 7755 8888888888764
|
|
| >smart00053 DYNc Dynamin, GTPase | Back alignment and domain information |
|---|
Probab=99.33 E-value=1.8e-10 Score=81.26 Aligned_cols=69 Identities=20% Similarity=0.182 Sum_probs=43.6
Q ss_pred EEEEEEecCCchh-------------hHHhHHHHhc-CCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEee
Q 030429 57 VTIKLWDLGGQRR-------------FRTMWERYCR-GVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGN 122 (177)
Q Consensus 57 ~~~~~~D~~g~~~-------------~~~~~~~~~~-~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~n 122 (177)
..+.++|+||-.. ...+...|++ ..+.+++|+|++..-.-.........+ .. ...|+++|+|
T Consensus 125 ~~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~~~~~IIL~Vvda~~d~~~~d~l~ia~~l-d~---~~~rti~ViT 200 (240)
T smart00053 125 LNLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISKEECLILAVTPANVDLANSDALKLAKEV-DP---QGERTIGVIT 200 (240)
T ss_pred CceEEEeCCCccccccCCccHHHHHHHHHHHHHHHhCccCeEEEEEECCCCCCchhHHHHHHHH-HH---cCCcEEEEEE
Confidence 5788999999532 1234455677 456999999986532222222222222 22 4689999999
Q ss_pred CCCcccc
Q 030429 123 KIDKSEA 129 (177)
Q Consensus 123 K~D~~~~ 129 (177)
|+|..+.
T Consensus 201 K~D~~~~ 207 (240)
T smart00053 201 KLDLMDE 207 (240)
T ss_pred CCCCCCc
Confidence 9998764
|
Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event. |
| >COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription] | Back alignment and domain information |
|---|
Probab=99.32 E-value=1.3e-11 Score=82.75 Aligned_cols=79 Identities=14% Similarity=0.208 Sum_probs=50.3
Q ss_pred CEEEEEEeCCCCCCHHHHHHHHHHHHc-CCCCCCCcEEEEeeCCCcccccCH--HHHHHHhCcccccCCceeEEEeeecC
Q 030429 82 SAILYVVDAADRDSVPIARSELHELLM-KPSLSGIPLLVLGNKIDKSEALSK--QALVDQLGLESITDREVCCYMISCKD 158 (177)
Q Consensus 82 d~~i~v~d~~~~~~~~~~~~~~~~~~~-~~~~~~~~~iiv~nK~D~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~Sa~~ 158 (177)
+.-++|+|.+..+..+. . +.... ..=++|+||.|+.+.... +...+.... -.+..+++++|+++
T Consensus 119 ~~~v~VidvteGe~~P~---------K~gP~i~-~aDllVInK~DLa~~v~~dlevm~~da~~---~np~~~ii~~n~kt 185 (202)
T COG0378 119 HLRVVVIDVTEGEDIPR---------KGGPGIF-KADLLVINKTDLAPYVGADLEVMARDAKE---VNPEAPIIFTNLKT 185 (202)
T ss_pred ceEEEEEECCCCCCCcc---------cCCCcee-EeeEEEEehHHhHHHhCccHHHHHHHHHH---hCCCCCEEEEeCCC
Confidence 37778888766432211 1 11111 145889999999875433 333333221 13456899999999
Q ss_pred CCChHHHHHHHHHHh
Q 030429 159 SINIDAVIDWLIKHS 173 (177)
Q Consensus 159 ~~~i~~l~~~l~~~~ 173 (177)
|+|++++++++...+
T Consensus 186 g~G~~~~~~~i~~~~ 200 (202)
T COG0378 186 GEGLDEWLRFIEPQA 200 (202)
T ss_pred CcCHHHHHHHHHhhc
Confidence 999999999987654
|
|
| >KOG0085 consensus G protein subunit Galphaq/Galphay, small G protein superfamily [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.31 E-value=5.7e-12 Score=86.62 Aligned_cols=135 Identities=19% Similarity=0.266 Sum_probs=94.9
Q ss_pred CCCccceeEEEEEeCCEEEEEEecCCchhhHHhHHHHhcCCCEEEEEEeCC----------CCCCHHHHHHHHHHHHcCC
Q 030429 41 MIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAA----------DRDSVPIARSELHELLMKP 110 (177)
Q Consensus 41 ~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~----------~~~~~~~~~~~~~~~~~~~ 110 (177)
..||.++..+.++..++.|.++|++|+...+..|...+.....+++++.++ +...+++....+..++...
T Consensus 183 RvPTTGi~eypfdl~~iifrmvDvGGqrserrKWIHCFEnvtsi~fLvaLSEYDQvL~E~dnENRMeESkALFrTIi~yP 262 (359)
T KOG0085|consen 183 RVPTTGIIEYPFDLQKIIFRMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQVLVESDNENRMEESKALFRTIITYP 262 (359)
T ss_pred ecCcccceecCcchhhheeeeeecCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHhccc
Confidence 446777777778888899999999999988888887777666555555443 3445777788888888887
Q ss_pred CCCCCcEEEEeeCCCcccccCH------------------HHHHHHh----Ccccc-cCCceeEEEeeecCCCChHHHHH
Q 030429 111 SLSGIPLLVLGNKIDKSEALSK------------------QALVDQL----GLESI-TDREVCCYMISCKDSINIDAVID 167 (177)
Q Consensus 111 ~~~~~~~iiv~nK~D~~~~~~~------------------~~~~~~~----~~~~~-~~~~~~~~~~Sa~~~~~i~~l~~ 167 (177)
-..+.++|+++||-|+.++... +...+.. ..... ..+-.--.+++|.+-+||.-+|.
T Consensus 263 WF~nssVIlFLNKkDlLEekI~ySHl~~YFPe~~GP~qDa~AAreFILkm~~d~nPd~dKii~SHfTcATDT~NIRfVFa 342 (359)
T KOG0085|consen 263 WFQNSSVILFLNKKDLLEEKILYSHLADYFPEFDGPKQDAQAAREFILKMYVDMNPDSDKIIYSHFTCATDTENIRFVFA 342 (359)
T ss_pred cccCCceEEEechhhhhhhhhhHHHHHHhCcccCCCcccHHHHHHHHHHHHHhhCCCccceeeeeeeecccchhHHHHHH
Confidence 7788999999999998765321 1111111 00011 11223446799999999999999
Q ss_pred HHHHHhhh
Q 030429 168 WLIKHSKT 175 (177)
Q Consensus 168 ~l~~~~~~ 175 (177)
.+.+.+.+
T Consensus 343 aVkDtiLq 350 (359)
T KOG0085|consen 343 AVKDTILQ 350 (359)
T ss_pred HHHHHHHH
Confidence 88876543
|
|
| >KOG0099 consensus G protein subunit Galphas, small G protein superfamily [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.28 E-value=2.1e-11 Score=85.18 Aligned_cols=132 Identities=20% Similarity=0.214 Sum_probs=90.1
Q ss_pred ccceeEEEEEeCCEEEEEEecCCchhhHHhHHHHhcCCCEEEEEEeCCCCC----------CHHHHHHHHHHHHcCCCCC
Q 030429 44 TVGFNMRKVTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAADRD----------SVPIARSELHELLMKPSLS 113 (177)
Q Consensus 44 t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~----------~~~~~~~~~~~~~~~~~~~ 113 (177)
|.|+-...+..+.+.|+++|++|+++-+..|...+.+..++++|+..|... .+.+....+..++...-..
T Consensus 189 TsGIfet~FqVdkv~FhMfDVGGQRDeRrKWIQcFndvtAiifv~acSsyn~vlrED~~qNRL~EaL~LFksiWnNRwL~ 268 (379)
T KOG0099|consen 189 TSGIFETKFQVDKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVACSSYNMVLREDNQQNRLQEALNLFKSIWNNRWLR 268 (379)
T ss_pred ccceeeEEEeccccceeeeccCCchhhhhhHHHHhcCccEEEEEEeccchhhhhhcCCchhHHHHHHHHHHHHHhhhHHh
Confidence 555666667778899999999999999999999999999999999987522 2334455555665554445
Q ss_pred CCcEEEEeeCCCcccccCH------------------------------HHHHHHh-------C--cccccC-CceeEEE
Q 030429 114 GIPLLVLGNKIDKSEALSK------------------------------QALVDQL-------G--LESITD-REVCCYM 153 (177)
Q Consensus 114 ~~~~iiv~nK~D~~~~~~~------------------------------~~~~~~~-------~--~~~~~~-~~~~~~~ 153 (177)
.+.+|+++||.|+..+... .-..+.+ . ...... ..+-..+
T Consensus 269 tisvIlFLNKqDllaeKi~Agk~~i~dyFpEf~~y~~p~da~~es~~d~~v~raK~fird~FlRiSta~~Dg~h~CYpHF 348 (379)
T KOG0099|consen 269 TISVILFLNKQDLLAEKILAGKSKIEDYFPEFARYTTPEDATPESGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHF 348 (379)
T ss_pred hhheeEEecHHHHHHHHHHcchhhHHHhChHHhccCCccccCCCCCCChhhHHHHHhhhhhHhhhccccCCCceecccce
Confidence 7899999999997543110 0000000 0 000011 1234567
Q ss_pred eeecCCCChHHHHHHHHHHhhh
Q 030429 154 ISCKDSINIDAVIDWLIKHSKT 175 (177)
Q Consensus 154 ~Sa~~~~~i~~l~~~l~~~~~~ 175 (177)
++|.+-++|..+|....+.+..
T Consensus 349 TcAvDTenIrrVFnDcrdiIqr 370 (379)
T KOG0099|consen 349 TCAVDTENIRRVFNDCRDIIQR 370 (379)
T ss_pred eEeechHHHHHHHHHHHHHHHH
Confidence 9999999999999988776643
|
|
| >KOG0410 consensus Predicted GTP binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.24 E-value=4.1e-11 Score=86.06 Aligned_cols=152 Identities=17% Similarity=0.193 Sum_probs=98.4
Q ss_pred cccceeEEEEEcCCCCCHHHHHHHHhcCCCCCC--CCCccceeEEEEEe-CCEEEEEEecCCc---------hhhHHhHH
Q 030429 8 FFKQEMELSLIGLQNAGKTSLVNTIATGGYSED--MIPTVGFNMRKVTK-GNVTIKLWDLGGQ---------RRFRTMWE 75 (177)
Q Consensus 8 ~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~--~~~t~~~~~~~~~~-~~~~~~~~D~~g~---------~~~~~~~~ 75 (177)
......-|.++|-+++|||||+++|......+. ...|...+...... .+..+-+-||-|- ..|.....
T Consensus 174 ~~~s~pviavVGYTNaGKsTLikaLT~Aal~p~drLFATLDpT~h~a~Lpsg~~vlltDTvGFisdLP~~LvaAF~ATLe 253 (410)
T KOG0410|consen 174 EGESSPVIAVVGYTNAGKSTLIKALTKAALYPNDRLFATLDPTLHSAHLPSGNFVLLTDTVGFISDLPIQLVAAFQATLE 253 (410)
T ss_pred ccCCCceEEEEeecCccHHHHHHHHHhhhcCccchhheeccchhhhccCCCCcEEEEeechhhhhhCcHHHHHHHHHHHH
Confidence 345566899999999999999999985443222 22344444444433 3455666699882 23333332
Q ss_pred HHhcCCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCC----cEEEEeeCCCcccccCHHHHHHHhCcccccCCceeE
Q 030429 76 RYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGI----PLLVLGNKIDKSEALSKQALVDQLGLESITDREVCC 151 (177)
Q Consensus 76 ~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~----~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (177)
....+|+++.|.|+|.|..-......+..+ .....+.. .++-|-||+|..+.....+ + -..
T Consensus 254 -eVaeadlllHvvDiShP~ae~q~e~Vl~vL-~~igv~~~pkl~~mieVdnkiD~e~~~~e~E------------~-n~~ 318 (410)
T KOG0410|consen 254 -EVAEADLLLHVVDISHPNAEEQRETVLHVL-NQIGVPSEPKLQNMIEVDNKIDYEEDEVEEE------------K-NLD 318 (410)
T ss_pred -HHhhcceEEEEeecCCccHHHHHHHHHHHH-HhcCCCcHHHHhHHHhhccccccccccCccc------------c-CCc
Confidence 356799999999999997555555554444 33332222 3567788888765422100 0 025
Q ss_pred EEeeecCCCChHHHHHHHHHHhh
Q 030429 152 YMISCKDSINIDAVIDWLIKHSK 174 (177)
Q Consensus 152 ~~~Sa~~~~~i~~l~~~l~~~~~ 174 (177)
+.+||++|.|++++.+.+-..+.
T Consensus 319 v~isaltgdgl~el~~a~~~kv~ 341 (410)
T KOG0410|consen 319 VGISALTGDGLEELLKAEETKVA 341 (410)
T ss_pred cccccccCccHHHHHHHHHHHhh
Confidence 78999999999999999887654
|
|
| >COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.18 E-value=1.5e-09 Score=79.80 Aligned_cols=81 Identities=23% Similarity=0.359 Sum_probs=55.1
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCCCC--CCCccceeEEEEEe------------------CCEEEEEEecCCchh--
Q 030429 12 EMELSLIGLQNAGKTSLVNTIATGGYSED--MIPTVGFNMRKVTK------------------GNVTIKLWDLGGQRR-- 69 (177)
Q Consensus 12 ~~~i~i~G~~~~GKSsli~~l~~~~~~~~--~~~t~~~~~~~~~~------------------~~~~~~~~D~~g~~~-- 69 (177)
.++++|+|.|++|||||.|+++....... +..|++.+...+.. -...+.++|++|--.
T Consensus 2 ~l~~GIVGlPNVGKSTlFnAlT~~~a~~aNYPF~TIePN~Giv~v~d~rl~~L~~~~~c~~k~~~~~ve~vDIAGLV~GA 81 (372)
T COG0012 2 SLKIGIVGLPNVGKSTLFNALTKAGAEIANYPFCTIEPNVGVVYVPDCRLDELAEIVKCPPKIRPAPVEFVDIAGLVKGA 81 (372)
T ss_pred CceeEEecCCCCcHHHHHHHHHcCCccccCCCcccccCCeeEEecCchHHHHHHHhcCCCCcEEeeeeEEEEecccCCCc
Confidence 47899999999999999999997664322 22355555444321 125688999998321
Q ss_pred -----hHHhHHHHhcCCCEEEEEEeCCC
Q 030429 70 -----FRTMWERYCRGVSAILYVVDAAD 92 (177)
Q Consensus 70 -----~~~~~~~~~~~~d~~i~v~d~~~ 92 (177)
.-+..-..++++|+++.|++++.
T Consensus 82 s~GeGLGNkFL~~IRevdaI~hVVr~f~ 109 (372)
T COG0012 82 SKGEGLGNKFLDNIREVDAIIHVVRCFG 109 (372)
T ss_pred ccCCCcchHHHHhhhhcCeEEEEEEecC
Confidence 11222344778999999999963
|
|
| >KOG3886 consensus GTP-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.18 E-value=1.4e-10 Score=79.71 Aligned_cols=118 Identities=25% Similarity=0.380 Sum_probs=77.0
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCC---CCCCCCccceeEEEEE-eCCEEEEEEecCCchhhHHh-----HHHHhcCCC
Q 030429 12 EMELSLIGLQNAGKTSLVNTIATGGY---SEDMIPTVGFNMRKVT-KGNVTIKLWDLGGQRRFRTM-----WERYCRGVS 82 (177)
Q Consensus 12 ~~~i~i~G~~~~GKSsli~~l~~~~~---~~~~~~t~~~~~~~~~-~~~~~~~~~D~~g~~~~~~~-----~~~~~~~~d 82 (177)
.-||+++|.+||||||+=..+..... ....+.|+++....+. .++..+++||++|++.+... ....+...+
T Consensus 4 ~kKvlLMGrsGsGKsSmrsiiF~ny~a~D~~rlg~tidveHsh~RflGnl~LnlwDcGgqe~fmen~~~~q~d~iF~nV~ 83 (295)
T KOG3886|consen 4 KKKVLLMGRSGSGKSSMRSIIFANYIARDTRRLGATIDVEHSHVRFLGNLVLNLWDCGGQEEFMENYLSSQEDNIFRNVQ 83 (295)
T ss_pred cceEEEeccCCCCccccchhhhhhhhhhhhhccCCcceeeehhhhhhhhheeehhccCCcHHHHHHHHhhcchhhheehe
Confidence 45899999999999997555543222 2334445555554454 45689999999999866432 223577789
Q ss_pred EEEEEEeCCCCCCHHHH---HHHHHHHHcCCCCCCCcEEEEeeCCCcccccC
Q 030429 83 AILYVVDAADRDSVPIA---RSELHELLMKPSLSGIPLLVLGNKIDKSEALS 131 (177)
Q Consensus 83 ~~i~v~d~~~~~~~~~~---~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~ 131 (177)
++++|+|++..+.-.++ +.-+..++.. .+.-.+....+|.|+.....
T Consensus 84 vli~vFDves~e~~~D~~~yqk~Le~ll~~--SP~AkiF~l~hKmDLv~~d~ 133 (295)
T KOG3886|consen 84 VLIYVFDVESREMEKDFHYYQKCLEALLQN--SPEAKIFCLLHKMDLVQEDA 133 (295)
T ss_pred eeeeeeeccchhhhhhHHHHHHHHHHHHhc--CCcceEEEEEeechhcccch
Confidence 99999999876533333 3333333333 23455777799999976533
|
|
| >KOG0460 consensus Mitochondrial translation elongation factor Tu [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.16 E-value=5.3e-10 Score=80.98 Aligned_cols=161 Identities=18% Similarity=0.166 Sum_probs=103.5
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHhc----CC------C------CCCCCCccceeEEE--EEeCCEEEEEEecCCchhh
Q 030429 9 FKQEMELSLIGLQNAGKTSLVNTIAT----GG------Y------SEDMIPTVGFNMRK--VTKGNVTIKLWDLGGQRRF 70 (177)
Q Consensus 9 ~~~~~~i~i~G~~~~GKSsli~~l~~----~~------~------~~~~~~t~~~~~~~--~~~~~~~~~~~D~~g~~~~ 70 (177)
.+...||+-+|....|||||..++.. .. + +...-..+.++... ++.....+-..|+||+.+|
T Consensus 51 ~KPHvNVGTIGHVDHGKTTLTaAITkila~~g~A~~~kydeID~APEEkaRGITIn~aHveYeTa~RhYaH~DCPGHADY 130 (449)
T KOG0460|consen 51 DKPHVNVGTIGHVDHGKTTLTAAITKILAEKGGAKFKKYDEIDKAPEEKARGITINAAHVEYETAKRHYAHTDCPGHADY 130 (449)
T ss_pred CCCcccccccccccCCchhHHHHHHHHHHhccccccccHhhhhcChhhhhccceEeeeeeeeeccccccccCCCCchHHH
Confidence 45668999999999999999887761 10 1 11111222233333 3445567778899999999
Q ss_pred HHhHHHHhcCCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccCH-----HHHHHHhCccccc
Q 030429 71 RTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSK-----QALVDQLGLESIT 145 (177)
Q Consensus 71 ~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~-----~~~~~~~~~~~~~ 145 (177)
-.-+.....+.|++|+|+.++|.. ++..+..+.-..+- .-..+++++||.|..++.+. .+..+.+....+.
T Consensus 131 IKNMItGaaqMDGaILVVaatDG~-MPQTrEHlLLArQV---GV~~ivvfiNKvD~V~d~e~leLVEmE~RElLse~gf~ 206 (449)
T KOG0460|consen 131 IKNMITGAAQMDGAILVVAATDGP-MPQTREHLLLARQV---GVKHIVVFINKVDLVDDPEMLELVEMEIRELLSEFGFD 206 (449)
T ss_pred HHHhhcCccccCceEEEEEcCCCC-CcchHHHHHHHHHc---CCceEEEEEecccccCCHHHHHHHHHHHHHHHHHcCCC
Confidence 877777778899999999998864 33334443333232 12457777899999854432 3455566666666
Q ss_pred CCceeEEEeeec---CCCC-------hHHHHHHHHHHh
Q 030429 146 DREVCCYMISCK---DSIN-------IDAVIDWLIKHS 173 (177)
Q Consensus 146 ~~~~~~~~~Sa~---~~~~-------i~~l~~~l~~~~ 173 (177)
....|++.-||. +|.+ |..|++.+..++
T Consensus 207 Gd~~PvI~GSAL~ALeg~~peig~~aI~kLldavDsyi 244 (449)
T KOG0460|consen 207 GDNTPVIRGSALCALEGRQPEIGLEAIEKLLDAVDSYI 244 (449)
T ss_pred CCCCCeeecchhhhhcCCCccccHHHHHHHHHHHhccC
Confidence 677888876664 4422 555555555443
|
|
| >cd01855 YqeH YqeH | Back alignment and domain information |
|---|
Probab=99.15 E-value=3.2e-10 Score=77.90 Aligned_cols=101 Identities=19% Similarity=0.194 Sum_probs=65.2
Q ss_pred chhhHHhHHHHhcCCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccCHHH-HHHHh---Ccc
Q 030429 67 QRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQA-LVDQL---GLE 142 (177)
Q Consensus 67 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~-~~~~~---~~~ 142 (177)
...+...+..+++.+|++++|+|++++..... ..+... ..++|+++|+||+|+.+.....+ ..... ...
T Consensus 21 ~~~~~~~l~~~~~~ad~il~VvD~~~~~~~~~-----~~l~~~--~~~~~~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~ 93 (190)
T cd01855 21 EDFILNLLSSISPKKALVVHVVDIFDFPGSLI-----PRLRLF--GGNNPVILVGNKIDLLPKDKNLVRIKNWLRAKAAA 93 (190)
T ss_pred HHHHHHHHHhcccCCcEEEEEEECccCCCccc-----hhHHHh--cCCCcEEEEEEchhcCCCCCCHHHHHHHHHHHHHh
Confidence 34467888889999999999999987542111 111111 13579999999999975433221 11111 101
Q ss_pred cccCCceeEEEeeecCCCChHHHHHHHHHHhh
Q 030429 143 SITDREVCCYMISCKDSINIDAVIDWLIKHSK 174 (177)
Q Consensus 143 ~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~ 174 (177)
........++++||+++.|++++++.|.+.+.
T Consensus 94 ~~~~~~~~i~~vSA~~~~gi~eL~~~l~~~l~ 125 (190)
T cd01855 94 GLGLKPKDVILISAKKGWGVEELINAIKKLAK 125 (190)
T ss_pred hcCCCcccEEEEECCCCCCHHHHHHHHHHHhh
Confidence 11111235899999999999999999988763
|
YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. |
| >cd01900 YchF YchF subfamily | Back alignment and domain information |
|---|
Probab=99.15 E-value=3.1e-10 Score=81.62 Aligned_cols=77 Identities=27% Similarity=0.350 Sum_probs=52.0
Q ss_pred EEEEcCCCCCHHHHHHHHhcCCCCCC--CCCccceeEEEEEeCC-----------------EEEEEEecCCchhh----H
Q 030429 15 LSLIGLQNAGKTSLVNTIATGGYSED--MIPTVGFNMRKVTKGN-----------------VTIKLWDLGGQRRF----R 71 (177)
Q Consensus 15 i~i~G~~~~GKSsli~~l~~~~~~~~--~~~t~~~~~~~~~~~~-----------------~~~~~~D~~g~~~~----~ 71 (177)
|+++|.|+||||||+|++++...... ...|.......+...+ ..+.++|+||-... .
T Consensus 1 igivG~PN~GKSTLfn~Lt~~~~~~~n~pftTi~p~~g~v~v~d~r~~~l~~~~~~~k~~~~~i~lvD~pGl~~~a~~~~ 80 (274)
T cd01900 1 IGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGIVPVPDERLDKLAEIVKPKKIVPATIEFVDIAGLVKGASKGE 80 (274)
T ss_pred CeEeCCCCCcHHHHHHHHhCCCCccccccccchhceeeeEEeccchhhhHHHHhCCceeeeeEEEEEECCCcCCCCchhh
Confidence 57999999999999999997665332 2334454444443332 25899999994321 1
Q ss_pred H---hHHHHhcCCCEEEEEEeCC
Q 030429 72 T---MWERYCRGVSAILYVVDAA 91 (177)
Q Consensus 72 ~---~~~~~~~~~d~~i~v~d~~ 91 (177)
. ..-..++.+|++++|+|+.
T Consensus 81 glg~~fL~~i~~~D~li~VV~~f 103 (274)
T cd01900 81 GLGNKFLSHIREVDAIAHVVRCF 103 (274)
T ss_pred HHHHHHHHHHHhCCEEEEEEeCc
Confidence 1 1223467899999999984
|
YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor. |
| >KOG0466 consensus Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.14 E-value=3.9e-11 Score=85.63 Aligned_cols=115 Identities=17% Similarity=0.148 Sum_probs=83.1
Q ss_pred EEEEEEecCCchhhHHhHHHHhcCCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccCHHHHH
Q 030429 57 VTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALV 136 (177)
Q Consensus 57 ~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~ 136 (177)
..+.++|+||++-....+-....-.|++++++.++.++.-+.....+..+-.. .-+.++++.||+|+..++...+..
T Consensus 125 RHVSfVDCPGHDiLMaTMLnGaAvmDaalLlIA~NEsCPQPQTsEHLaaveiM---~LkhiiilQNKiDli~e~~A~eq~ 201 (466)
T KOG0466|consen 125 RHVSFVDCPGHDILMATMLNGAAVMDAALLLIAGNESCPQPQTSEHLAAVEIM---KLKHIIILQNKIDLIKESQALEQH 201 (466)
T ss_pred EEEEeccCCchHHHHHHHhcchHHhhhhhhhhhcCCCCCCCchhhHHHHHHHh---hhceEEEEechhhhhhHHHHHHHH
Confidence 35778999999877766655555579999999998776666555555544222 235688889999998876554444
Q ss_pred HHhCccc--ccCCceeEEEeeecCCCChHHHHHHHHHHhh
Q 030429 137 DQLGLES--ITDREVCCYMISCKDSINIDAVIDWLIKHSK 174 (177)
Q Consensus 137 ~~~~~~~--~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~ 174 (177)
++..... ....+.|++++||.-..|++.+.++|+..+.
T Consensus 202 e~I~kFi~~t~ae~aPiiPisAQlkyNId~v~eyivkkIP 241 (466)
T KOG0466|consen 202 EQIQKFIQGTVAEGAPIIPISAQLKYNIDVVCEYIVKKIP 241 (466)
T ss_pred HHHHHHHhccccCCCceeeehhhhccChHHHHHHHHhcCC
Confidence 4433221 2235679999999999999999999998764
|
|
| >KOG0468 consensus U5 snRNP-specific protein [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.14 E-value=1.1e-10 Score=90.89 Aligned_cols=114 Identities=17% Similarity=0.234 Sum_probs=79.7
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHhcCCCCCC---------CCC--------ccceeEE-------EEEeCCEEEEEEec
Q 030429 9 FKQEMELSLIGLQNAGKTSLVNTIATGGYSED---------MIP--------TVGFNMR-------KVTKGNVTIKLWDL 64 (177)
Q Consensus 9 ~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~---------~~~--------t~~~~~~-------~~~~~~~~~~~~D~ 64 (177)
.....+|+++|+-++|||+|+..|....-+.. +.. ..++... ..+.+.+-+++.||
T Consensus 125 p~~irnV~l~GhLhhGKT~l~D~Lv~~tHp~~~~~~e~~lrytD~l~~E~eRg~sIK~~p~Tl~l~D~~~KS~l~nilDT 204 (971)
T KOG0468|consen 125 PERIRNVGLVGHLHHGKTALMDLLVEQTHPDFSKNTEADLRYTDTLFYEQERGCSIKSTPVTLVLSDSKGKSYLMNILDT 204 (971)
T ss_pred cceEEEEEEeeccccChhHHHHhhceeccccccccccccccccccchhhHhcCceEeecceEEEEecCcCceeeeeeecC
Confidence 45568999999999999999999984322111 000 0001110 12235678999999
Q ss_pred CCchhhHHhHHHHhcCCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcc
Q 030429 65 GGQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKS 127 (177)
Q Consensus 65 ~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~ 127 (177)
||+-.|.......+..+|++++++|+...-++.. ...+....+ .+.|+.+|+||+|..
T Consensus 205 PGHVnF~DE~ta~l~~sDgvVlvvDv~EGVmlnt-Er~ikhaiq----~~~~i~vviNKiDRL 262 (971)
T KOG0468|consen 205 PGHVNFSDETTASLRLSDGVVLVVDVAEGVMLNT-ERIIKHAIQ----NRLPIVVVINKVDRL 262 (971)
T ss_pred CCcccchHHHHHHhhhcceEEEEEEcccCceeeH-HHHHHHHHh----ccCcEEEEEehhHHH
Confidence 9999999999999999999999999966544433 333333333 479999999999964
|
|
| >cd01859 MJ1464 MJ1464 | Back alignment and domain information |
|---|
Probab=99.13 E-value=5.1e-10 Score=74.46 Aligned_cols=93 Identities=17% Similarity=0.212 Sum_probs=61.5
Q ss_pred HhHHHHhcCCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccCHHHHHHHhCcccccCCceeE
Q 030429 72 TMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCC 151 (177)
Q Consensus 72 ~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (177)
.+.+..+.++|++++|+|++++..... ..+...... .++|+++|+||+|+.+.....++. .+. .....++
T Consensus 4 ~~~~~i~~~aD~vl~V~D~~~~~~~~~--~~l~~~~~~---~~~p~iiv~NK~Dl~~~~~~~~~~-~~~----~~~~~~~ 73 (156)
T cd01859 4 RLVRRIIKESDVVLEVLDARDPELTRS--RKLERYVLE---LGKKLLIVLNKADLVPKEVLEKWK-SIK----ESEGIPV 73 (156)
T ss_pred HHHHHHHhhCCEEEEEeeCCCCcccCC--HHHHHHHHh---CCCcEEEEEEhHHhCCHHHHHHHH-HHH----HhCCCcE
Confidence 455667778999999999987643222 122222222 358999999999986532222221 111 1122468
Q ss_pred EEeeecCCCChHHHHHHHHHHhh
Q 030429 152 YMISCKDSINIDAVIDWLIKHSK 174 (177)
Q Consensus 152 ~~~Sa~~~~~i~~l~~~l~~~~~ 174 (177)
+++||+++.|++++++.+.+.+.
T Consensus 74 ~~iSa~~~~gi~~L~~~l~~~~~ 96 (156)
T cd01859 74 VYVSAKERLGTKILRRTIKELAK 96 (156)
T ss_pred EEEEccccccHHHHHHHHHHHHh
Confidence 99999999999999999988764
|
This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus. |
| >COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.12 E-value=9.8e-10 Score=84.58 Aligned_cols=145 Identities=11% Similarity=0.148 Sum_probs=90.2
Q ss_pred ecccccceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEeCCEEEEEEecCCchhhHHhHHHHhcCCCEE
Q 030429 5 ISLFFKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAI 84 (177)
Q Consensus 5 ~~~~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~ 84 (177)
..-..+.++-++++|+||+|||||+++++.. +.......+.-.+..+..+..++++.++|.+ ... +....+-+|++
T Consensus 62 tp~d~PPPfIvavvGPpGtGKsTLirSlVrr-~tk~ti~~i~GPiTvvsgK~RRiTflEcp~D--l~~-miDvaKIaDLV 137 (1077)
T COG5192 62 TPKDLPPPFIVAVVGPPGTGKSTLIRSLVRR-FTKQTIDEIRGPITVVSGKTRRITFLECPSD--LHQ-MIDVAKIADLV 137 (1077)
T ss_pred CcccCCCCeEEEeecCCCCChhHHHHHHHHH-HHHhhhhccCCceEEeecceeEEEEEeChHH--HHH-HHhHHHhhhee
Confidence 3445567889999999999999999999832 2222222222333445677789999999943 322 23345568999
Q ss_pred EEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccC-HHHHHHHhCcccc--cCCceeEEEeeec
Q 030429 85 LYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALS-KQALVDQLGLESI--TDREVCCYMISCK 157 (177)
Q Consensus 85 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~-~~~~~~~~~~~~~--~~~~~~~~~~Sa~ 157 (177)
++++|.+-. |+.-.-.+..++...+ -..++-|+|..|+..... .....+++...+. ...++.+|..|.-
T Consensus 138 lLlIdgnfG--fEMETmEFLnil~~HG--mPrvlgV~ThlDlfk~~stLr~~KKrlkhRfWtEiyqGaKlFylsgV 209 (1077)
T COG5192 138 LLLIDGNFG--FEMETMEFLNILISHG--MPRVLGVVTHLDLFKNPSTLRSIKKRLKHRFWTEIYQGAKLFYLSGV 209 (1077)
T ss_pred EEEeccccC--ceehHHHHHHHHhhcC--CCceEEEEeecccccChHHHHHHHHHHhhhHHHHHcCCceEEEeccc
Confidence 999999553 4444445555555533 234778899999976433 3334444432211 1345567777654
|
|
| >KOG1487 consensus GTP-binding protein DRG1 (ODN superfamily) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.08 E-value=8e-10 Score=77.34 Aligned_cols=152 Identities=19% Similarity=0.161 Sum_probs=92.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCC--ccceeEEEEEeCCEEEEEEecCCchhhH-------HhHHHHhcCCCE
Q 030429 13 MELSLIGLQNAGKTSLVNTIATGGYSEDMIP--TVGFNMRKVTKGNVTIKLWDLGGQRRFR-------TMWERYCRGVSA 83 (177)
Q Consensus 13 ~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~--t~~~~~~~~~~~~~~~~~~D~~g~~~~~-------~~~~~~~~~~d~ 83 (177)
.++.++|.|.+||||++..+.+...+..... +.-.......+++..+++.|.||.-... .......+-|+.
T Consensus 60 a~vg~vgFPSvGksTl~~~l~g~~s~vasyefttl~~vpG~~~y~gaKiqlldlpgiiegakdgkgrg~qviavartcnl 139 (358)
T KOG1487|consen 60 ARVGFVGFPSVGKSTLLSKLTGTFSEVAAYEFTTLTTVPGVIRYKGAKIQLLDLPGIIEGAKDGKGRGKQVIAVARTCNL 139 (358)
T ss_pred eeeeEEecCccchhhhhhhhcCCCCccccccceeEEEecceEeccccceeeecCcchhcccccCCCCccEEEEEeecccE
Confidence 4899999999999999999984432222221 1111111234677889999999943221 111223456888
Q ss_pred EEEEEeCCCCCCH-----------------------------------------HHHHHHHHHHHcC-------------
Q 030429 84 ILYVVDAADRDSV-----------------------------------------PIARSELHELLMK------------- 109 (177)
Q Consensus 84 ~i~v~d~~~~~~~-----------------------------------------~~~~~~~~~~~~~------------- 109 (177)
+++|.|+.-|-+. +..+..+.+....
T Consensus 140 i~~vld~~kp~~hk~~ie~eleg~girlnk~pp~i~~kkKdkgGInlt~~~LdlD~~rsil~eyR~hsAdi~Lr~DaT~D 219 (358)
T KOG1487|consen 140 IFIVLDVLKPLSHKKIIEKELEGFGIRLNKQPPNIGTKKKDKGGINLTGTHLDLDLQRSILSEYRIHSADIALRFDATAD 219 (358)
T ss_pred EEEEeeccCcccHHHHHHHhhhcceeeccCCCCCccccccccCceeeecchhhHHHHHHHHHHhhhcchheeeecCcchh
Confidence 8888887432111 1111111111111
Q ss_pred -------CCCCCCcEEEEeeCCCcccccCHHHHHHHhCcccccCCceeEEEeeecCCCChHHHHHHHHHHhh
Q 030429 110 -------PSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCKDSINIDAVIDWLIKHSK 174 (177)
Q Consensus 110 -------~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~ 174 (177)
.....+|++.+.||+|...-++.+-. .+....+++||.++.|++++++.+.+.+.
T Consensus 220 dLIdvVegnr~yVp~iyvLNkIdsISiEELdii----------~~iphavpISA~~~wn~d~lL~~mweyL~ 281 (358)
T KOG1487|consen 220 DLIDVVEGNRIYVPCIYVLNKIDSISIEELDII----------YTIPHAVPISAHTGWNFDKLLEKMWEYLK 281 (358)
T ss_pred hhhhhhccCceeeeeeeeecccceeeeecccee----------eeccceeecccccccchHHHHHHHhhcch
Confidence 11135799999999998765432211 12225789999999999999999988765
|
|
| >PRK12289 GTPase RsgA; Reviewed | Back alignment and domain information |
|---|
Probab=99.07 E-value=8.1e-10 Score=82.27 Aligned_cols=89 Identities=19% Similarity=0.138 Sum_probs=63.4
Q ss_pred HHHHhcCCCEEEEEEeCCCCC-CHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccCHHHHHHHhCcccccCCceeEE
Q 030429 74 WERYCRGVSAILYVVDAADRD-SVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCY 152 (177)
Q Consensus 74 ~~~~~~~~d~~i~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (177)
.+..+.++|.+++|+|+.++. ....+..++..... .++|+++|+||+|+.+....+.+.+.+.. .+..++
T Consensus 83 ~R~~~aNvD~vLlV~d~~~p~~~~~~LdR~L~~a~~----~~ip~ILVlNK~DLv~~~~~~~~~~~~~~-----~g~~v~ 153 (352)
T PRK12289 83 DRPPVANADQILLVFALAEPPLDPWQLSRFLVKAES----TGLEIVLCLNKADLVSPTEQQQWQDRLQQ-----WGYQPL 153 (352)
T ss_pred echhhhcCCEEEEEEECCCCCCCHHHHHHHHHHHHH----CCCCEEEEEEchhcCChHHHHHHHHHHHh-----cCCeEE
Confidence 344578899999999998876 33344555554422 46899999999999765333344443322 223689
Q ss_pred EeeecCCCChHHHHHHHHH
Q 030429 153 MISCKDSINIDAVIDWLIK 171 (177)
Q Consensus 153 ~~Sa~~~~~i~~l~~~l~~ 171 (177)
++||+++.|+++|++.+..
T Consensus 154 ~iSA~tg~GI~eL~~~L~~ 172 (352)
T PRK12289 154 FISVETGIGLEALLEQLRN 172 (352)
T ss_pred EEEcCCCCCHHHHhhhhcc
Confidence 9999999999999998864
|
|
| >COG5258 GTPBP1 GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.03 E-value=7.9e-09 Score=76.20 Aligned_cols=163 Identities=19% Similarity=0.226 Sum_probs=103.3
Q ss_pred ecccccceeEEEEEcCCCCCHHHHHHHHhcCCCCCC------------------CCCccceeEEEEEe------------
Q 030429 5 ISLFFKQEMELSLIGLQNAGKTSLVNTIATGGYSED------------------MIPTVGFNMRKVTK------------ 54 (177)
Q Consensus 5 ~~~~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~------------------~~~t~~~~~~~~~~------------ 54 (177)
.....+..+.|+..|....|||||+-.|..+..... ..+...+..+.+..
T Consensus 110 ~~~~~~~hv~Vg~aGhVdhGKSTlvG~LvtG~~DDG~G~tR~~ldv~kHEverGlsa~iS~~v~Gf~dgk~~rlknPld~ 189 (527)
T COG5258 110 KTEEAPEHVLVGVAGHVDHGKSTLVGVLVTGRLDDGDGATRSYLDVQKHEVERGLSADISLRVYGFDDGKVVRLKNPLDE 189 (527)
T ss_pred cccCCCceEEEEEeccccCCcceEEEEEEecCCCCCCcchhhhhhhhhHHHhhccccceeEEEEEecCCceEeecCcccH
Confidence 344578889999999999999999999885543222 11222222222221
Q ss_pred ---------CCEEEEEEecCCchhhHHhHHH-H-hcCCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeC
Q 030429 55 ---------GNVTIKLWDLGGQRRFRTMWER-Y-CRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNK 123 (177)
Q Consensus 55 ---------~~~~~~~~D~~g~~~~~~~~~~-~-~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK 123 (177)
.+.-+.++|+.|++.+-..... . -++.|..++++.+++.-+-. .+..+.-.+- -..|++++.||
T Consensus 190 aE~~~vv~~aDklVsfVDtvGHEpwLrTtirGL~gqk~dYglLvVaAddG~~~~-tkEHLgi~~a----~~lPviVvvTK 264 (527)
T COG5258 190 AEKAAVVKRADKLVSFVDTVGHEPWLRTTIRGLLGQKVDYGLLVVAADDGVTKM-TKEHLGIALA----MELPVIVVVTK 264 (527)
T ss_pred HHHhHhhhhcccEEEEEecCCccHHHHHHHHHHhccccceEEEEEEccCCcchh-hhHhhhhhhh----hcCCEEEEEEe
Confidence 1245788999999988654433 2 35689999999997753221 1223322222 26899999999
Q ss_pred CCcccccCHHHHHHH----h---Ccc----------------cccCC-ceeEEEeeecCCCChHHHHHHHHHH
Q 030429 124 IDKSEALSKQALVDQ----L---GLE----------------SITDR-EVCCYMISCKDSINIDAVIDWLIKH 172 (177)
Q Consensus 124 ~D~~~~~~~~~~~~~----~---~~~----------------~~~~~-~~~~~~~Sa~~~~~i~~l~~~l~~~ 172 (177)
+|+.+++..+...+. + +.. ....+ -.|+|.+|+-+|+|++-|.+.+...
T Consensus 265 ~D~~~ddr~~~v~~ei~~~Lk~v~Rip~~vk~~~d~v~aa~a~k~~~~vvPi~~tSsVTg~GldlL~e~f~~L 337 (527)
T COG5258 265 IDMVPDDRFQGVVEEISALLKRVGRIPLIVKDTDDVVLAAKAMKAGRGVVPIFYTSSVTGEGLDLLDEFFLLL 337 (527)
T ss_pred cccCcHHHHHHHHHHHHHHHHHhcccceeeeccchhHHhhhhhhcCCceEEEEEEecccCccHHHHHHHHHhC
Confidence 999876544322222 1 110 01112 4799999999999998887766543
|
|
| >cd01858 NGP_1 NGP-1 | Back alignment and domain information |
|---|
Probab=99.00 E-value=2.6e-09 Score=71.13 Aligned_cols=91 Identities=20% Similarity=0.193 Sum_probs=60.2
Q ss_pred HHhcCCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccCHHHHHHHhCcccccCCceeEEEee
Q 030429 76 RYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMIS 155 (177)
Q Consensus 76 ~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 155 (177)
..++++|++++|+|++++... ....+...+... ..+.|+++|+||+|+.+.+....+.+.+.... . ...+++|
T Consensus 4 ~~l~~aD~il~VvD~~~p~~~--~~~~i~~~l~~~-~~~~p~ilVlNKiDl~~~~~~~~~~~~~~~~~---~-~~~~~iS 76 (157)
T cd01858 4 KVIDSSDVVIQVLDARDPMGT--RCKHVEEYLKKE-KPHKHLIFVLNKCDLVPTWVTARWVKILSKEY---P-TIAFHAS 76 (157)
T ss_pred HhhhhCCEEEEEEECCCCccc--cCHHHHHHHHhc-cCCCCEEEEEEchhcCCHHHHHHHHHHHhcCC---c-EEEEEee
Confidence 347789999999999886321 112222222221 23589999999999976543344444443221 1 2257899
Q ss_pred ecCCCChHHHHHHHHHHh
Q 030429 156 CKDSINIDAVIDWLIKHS 173 (177)
Q Consensus 156 a~~~~~i~~l~~~l~~~~ 173 (177)
|+.+.|++++++.+.+.+
T Consensus 77 a~~~~~~~~L~~~l~~~~ 94 (157)
T cd01858 77 INNPFGKGSLIQLLRQFS 94 (157)
T ss_pred ccccccHHHHHHHHHHHH
Confidence 999999999999998764
|
Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus. |
| >COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.99 E-value=1.9e-08 Score=73.82 Aligned_cols=116 Identities=19% Similarity=0.367 Sum_probs=69.1
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhcCCCCCC----------CCCccceeEEEEE--eCC--EEEEEEecCCchhh---HHh
Q 030429 11 QEMELSLIGLQNAGKTSLVNTIATGGYSED----------MIPTVGFNMRKVT--KGN--VTIKLWDLGGQRRF---RTM 73 (177)
Q Consensus 11 ~~~~i~i~G~~~~GKSsli~~l~~~~~~~~----------~~~t~~~~~~~~~--~~~--~~~~~~D~~g~~~~---~~~ 73 (177)
-.++|.++|+.|+|||||+|+|++...... ..++..+...... .++ .+++++||||-.++ ...
T Consensus 22 i~f~im~~G~sG~GKttfiNtL~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~~~l~vIDtpGfGD~idNs~~ 101 (373)
T COG5019 22 IDFTIMVVGESGLGKTTFINTLFGTSLVDETEIDDIRAEGTSPTLEIKITKAELEEDGFHLNLTVIDTPGFGDFIDNSKC 101 (373)
T ss_pred CceEEEEecCCCCchhHHHHhhhHhhccCCCCccCcccccCCcceEEEeeeeeeecCCeEEEEEEeccCCcccccccccc
Confidence 458999999999999999999997633222 1233334444322 233 67889999992211 011
Q ss_pred H-----------HHH------------hc--CCCEEEEEEeCCCCCCHHHHH-HHHHHHHcCCCCCCCcEEEEeeCCCcc
Q 030429 74 W-----------ERY------------CR--GVSAILYVVDAADRDSVPIAR-SELHELLMKPSLSGIPLLVLGNKIDKS 127 (177)
Q Consensus 74 ~-----------~~~------------~~--~~d~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~iiv~nK~D~~ 127 (177)
| ..| +. ..|+++|.+..+... +..+. ..+..+ . ..+.+|-|+.|+|..
T Consensus 102 we~I~~yI~~q~d~yl~~E~~~~R~~~~~D~RVH~cLYFI~Ptgh~-l~~~DIe~Mk~l-s----~~vNlIPVI~KaD~l 175 (373)
T COG5019 102 WEPIVDYIDDQFDQYLDEEQKIKRNPKFKDTRVHACLYFIRPTGHG-LKPLDIEAMKRL-S----KRVNLIPVIAKADTL 175 (373)
T ss_pred HHHHHHHHHHHHHHHHHHhhccccccccccCceEEEEEEecCCCCC-CCHHHHHHHHHH-h----cccCeeeeeeccccC
Confidence 1 111 11 258999999865432 22222 222222 2 357788899999987
Q ss_pred cccCH
Q 030429 128 EALSK 132 (177)
Q Consensus 128 ~~~~~ 132 (177)
...+.
T Consensus 176 T~~El 180 (373)
T COG5019 176 TDDEL 180 (373)
T ss_pred CHHHH
Confidence 65544
|
|
| >KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.98 E-value=8.4e-10 Score=84.33 Aligned_cols=158 Identities=23% Similarity=0.370 Sum_probs=109.6
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccce-eEEEE-EeCCEEEEEEecCCchhhHHhHHHHhcCCCEEEEEEe
Q 030429 12 EMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGF-NMRKV-TKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVD 89 (177)
Q Consensus 12 ~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~-~~~~~-~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d 89 (177)
.+|++|+|..++|||+|+.+++.+.+.....+.-+- ....+ ......+.+.|.+|.... .+....|++|+|+.
T Consensus 30 elk~givg~~~sgktalvhr~ltgty~~~e~~e~~~~kkE~vv~gqs~lLlirdeg~~~~a-----Qft~wvdavIfvf~ 104 (749)
T KOG0705|consen 30 ELKLGIVGTSQSGKTALVHRYLTGTYTQDESPEGGRFKKEVVVDGQSHLLLIRDEGGHPDA-----QFCQWVDAVVFVFS 104 (749)
T ss_pred hhheeeeecccCCceeeeeeeccceeccccCCcCccceeeEEeeccceEeeeecccCCchh-----hhhhhccceEEEEE
Confidence 589999999999999999999988887776665442 22222 334455666688873322 33556899999999
Q ss_pred CCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccCHHHHHHHhCcccccCCceeEEEeeecCCCChHHHHHHH
Q 030429 90 AADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCKDSINIDAVIDWL 169 (177)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l 169 (177)
..+..+++........+..+.....+|.++++++--.............-.........+.+|++++..|.++...|+.+
T Consensus 105 ~~d~~s~q~v~~l~~~l~~~r~r~~i~l~lvgtqd~iS~~~~rv~~da~~r~l~~~~krcsy~et~atyGlnv~rvf~~~ 184 (749)
T KOG0705|consen 105 VEDEQSFQAVQALAHEMSSYRNISDLPLILVGTQDHISAKRPRVITDDRARQLSAQMKRCSYYETCATYGLNVERVFQEV 184 (749)
T ss_pred eccccCHHHHHHHHhhcccccccccchHHhhcCcchhhcccccccchHHHHHHHHhcCccceeecchhhhhhHHHHHHHH
Confidence 99999999998888888766655668888888876432211110001111111122334579999999999999999999
Q ss_pred HHHhh
Q 030429 170 IKHSK 174 (177)
Q Consensus 170 ~~~~~ 174 (177)
...+.
T Consensus 185 ~~k~i 189 (749)
T KOG0705|consen 185 AQKIV 189 (749)
T ss_pred HHHHH
Confidence 87754
|
|
| >KOG1143 consensus Predicted translation elongation factor [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.97 E-value=4.2e-09 Score=77.40 Aligned_cols=155 Identities=21% Similarity=0.278 Sum_probs=96.9
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhcCCCCCCC----------------CC-------ccceeEEE--EE------------
Q 030429 11 QEMELSLIGLQNAGKTSLVNTIATGGYSEDM----------------IP-------TVGFNMRK--VT------------ 53 (177)
Q Consensus 11 ~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~----------------~~-------t~~~~~~~--~~------------ 53 (177)
-.++++++|...+|||||+--|.++...... .. +.+++... ++
T Consensus 166 ievRvAVlGg~D~GKSTLlGVLTQgeLDnG~GrARln~FRh~HEiqsGrTSsis~evlGFd~~g~vVNY~~~~taEEi~e 245 (591)
T KOG1143|consen 166 IEVRVAVLGGCDVGKSTLLGVLTQGELDNGNGRARLNIFRHPHEIQSGRTSSISNEVLGFDNRGKVVNYAQNMTAEEIVE 245 (591)
T ss_pred eEEEEEEecCcccCcceeeeeeecccccCCCCeeeeehhcchhhhccCcccccchhcccccccccccchhhcccHHHHHh
Confidence 4689999999999999999988854432211 11 11111111 11
Q ss_pred eCCEEEEEEecCCchhhHHhHHHHhcC--CCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccC
Q 030429 54 KGNVTIKLWDLGGQRRFRTMWERYCRG--VSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALS 131 (177)
Q Consensus 54 ~~~~~~~~~D~~g~~~~~~~~~~~~~~--~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~ 131 (177)
....-+.++|.+|+.+|.......+.+ .|.+++|++++....... +..+.-+.. -++|++++++|+|+.+...
T Consensus 246 ~SSKlvTfiDLAGh~kY~~TTi~gLtgY~Ph~A~LvVsA~~Gi~~tT-rEHLgl~~A----L~iPfFvlvtK~Dl~~~~~ 320 (591)
T KOG1143|consen 246 KSSKLVTFIDLAGHAKYQKTTIHGLTGYTPHFACLVVSADRGITWTT-REHLGLIAA----LNIPFFVLVTKMDLVDRQG 320 (591)
T ss_pred hhcceEEEeecccchhhheeeeeecccCCCceEEEEEEcCCCCcccc-HHHHHHHHH----hCCCeEEEEEeeccccchh
Confidence 123457899999999998766555554 488889998866533322 222222222 3799999999999987643
Q ss_pred HHH----HHHHhCc---------------------ccccCCceeEEEeeecCCCChHHHHHHHH
Q 030429 132 KQA----LVDQLGL---------------------ESITDREVCCYMISCKDSINIDAVIDWLI 170 (177)
Q Consensus 132 ~~~----~~~~~~~---------------------~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~ 170 (177)
.+. +...+.. ......-.|+|.+|+-+|+|++-+-..|.
T Consensus 321 ~~~tv~~l~nll~~~Gc~kvp~~Vt~~ddAv~Aaq~~~s~nivPif~vSsVsGegl~ll~~fLn 384 (591)
T KOG1143|consen 321 LKKTVKDLSNLLAKAGCTKVPKRVTTKDDAVKAAQELCSGNIVPIFAVSSVSGEGLRLLRTFLN 384 (591)
T ss_pred HHHHHHHHHHHHhhcCccccceEeechHHHHHHHHHhccCCceeEEEEeecCccchhHHHHHHh
Confidence 322 2222211 11112246889999999999988776654
|
|
| >cd01854 YjeQ_engC YjeQ/EngC | Back alignment and domain information |
|---|
Probab=98.97 E-value=3.8e-09 Score=76.99 Aligned_cols=88 Identities=14% Similarity=0.111 Sum_probs=63.4
Q ss_pred HHHhcCCCEEEEEEeCCCCC-CHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccCHHHHHHHhCcccccCCceeEEE
Q 030429 75 ERYCRGVSAILYVVDAADRD-SVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYM 153 (177)
Q Consensus 75 ~~~~~~~d~~i~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (177)
+..+.++|.+++|+|+.++. ++..+..|+..+.. .++|+++|+||+|+.+........... ...+.++++
T Consensus 73 ~~i~anvD~vllV~d~~~p~~s~~~ldr~L~~~~~----~~ip~iIVlNK~DL~~~~~~~~~~~~~-----~~~g~~v~~ 143 (287)
T cd01854 73 QVIAANVDQLVIVVSLNEPFFNPRLLDRYLVAAEA----AGIEPVIVLTKADLLDDEEEELELVEA-----LALGYPVLA 143 (287)
T ss_pred eeEEEeCCEEEEEEEcCCCCCCHHHHHHHHHHHHH----cCCCEEEEEEHHHCCChHHHHHHHHHH-----HhCCCeEEE
Confidence 33477899999999999887 77777777765543 368999999999997642211111111 112347899
Q ss_pred eeecCCCChHHHHHHHHH
Q 030429 154 ISCKDSINIDAVIDWLIK 171 (177)
Q Consensus 154 ~Sa~~~~~i~~l~~~l~~ 171 (177)
+||+++.|+++|++.|..
T Consensus 144 vSA~~g~gi~~L~~~L~~ 161 (287)
T cd01854 144 VSAKTGEGLDELREYLKG 161 (287)
T ss_pred EECCCCccHHHHHhhhcc
Confidence 999999999999988753
|
YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation. |
| >PRK00098 GTPase RsgA; Reviewed | Back alignment and domain information |
|---|
Probab=98.97 E-value=3.1e-09 Score=77.90 Aligned_cols=85 Identities=20% Similarity=0.160 Sum_probs=59.5
Q ss_pred HhcCCCEEEEEEeCCCCCCHHHH-HHHHHHHHcCCCCCCCcEEEEeeCCCccccc-CHHHHHHHhCcccccCCceeEEEe
Q 030429 77 YCRGVSAILYVVDAADRDSVPIA-RSELHELLMKPSLSGIPLLVLGNKIDKSEAL-SKQALVDQLGLESITDREVCCYMI 154 (177)
Q Consensus 77 ~~~~~d~~i~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 154 (177)
.+.++|.+++|+|++++...... ..|+... .. .++|+++|+||+|+.+.. ..+++.+.+.. .+.+++++
T Consensus 77 iaaniD~vllV~d~~~p~~~~~~idr~L~~~-~~---~~ip~iIVlNK~DL~~~~~~~~~~~~~~~~-----~g~~v~~v 147 (298)
T PRK00098 77 IAANVDQAVLVFAAKEPDFSTDLLDRFLVLA-EA---NGIKPIIVLNKIDLLDDLEEARELLALYRA-----IGYDVLEL 147 (298)
T ss_pred eeecCCEEEEEEECCCCCCCHHHHHHHHHHH-HH---CCCCEEEEEEhHHcCCCHHHHHHHHHHHHH-----CCCeEEEE
Confidence 35789999999999888766655 4444443 32 468999999999996321 11222222211 12478999
Q ss_pred eecCCCChHHHHHHHH
Q 030429 155 SCKDSINIDAVIDWLI 170 (177)
Q Consensus 155 Sa~~~~~i~~l~~~l~ 170 (177)
||+++.|++++++.+.
T Consensus 148 SA~~g~gi~~L~~~l~ 163 (298)
T PRK00098 148 SAKEGEGLDELKPLLA 163 (298)
T ss_pred eCCCCccHHHHHhhcc
Confidence 9999999999998874
|
|
| >KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.96 E-value=2.1e-08 Score=73.67 Aligned_cols=117 Identities=22% Similarity=0.272 Sum_probs=76.0
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhcCCCCCC---CCCccc-eeEEE--------------EEe----------C-------
Q 030429 11 QEMELSLIGLQNAGKTSLVNTIATGGYSED---MIPTVG-FNMRK--------------VTK----------G------- 55 (177)
Q Consensus 11 ~~~~i~i~G~~~~GKSsli~~l~~~~~~~~---~~~t~~-~~~~~--------------~~~----------~------- 55 (177)
.+.=|+++|+...|||||++.|++..++.. ..+|.. +.... ++. +
T Consensus 57 ~KPmill~GqyStGKTtfi~yLle~dypg~riGpEPTtd~Fi~vM~G~~e~~ipGnal~vd~~~pF~gL~~FG~aflnRf 136 (532)
T KOG1954|consen 57 AKPMILLVGQYSTGKTTFIRYLLEQDYPGLRIGPEPTTDRFIAVMHGDEEGSIPGNALVVDAKKPFRGLNKFGNAFLNRF 136 (532)
T ss_pred cCceEEEEeccccchhHHHHHHHhCCCCccccCCCCCcceeEEEEecCcccccCCceeeecCCCchhhhhhhHHHHHHHH
Confidence 345689999999999999999998776533 112222 11111 000 0
Q ss_pred ------C---EEEEEEecCCchh-----------hHHhHHHHhcCCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCC
Q 030429 56 ------N---VTIKLWDLGGQRR-----------FRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGI 115 (177)
Q Consensus 56 ------~---~~~~~~D~~g~~~-----------~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (177)
+ -.++++||||... |....+=+...+|.++++||+.--+--++....+..+..+ .-
T Consensus 137 ~csqmp~~vLe~vtiVdtPGILsgeKQrisR~ydF~~v~~WFaeR~D~IiLlfD~hKLDIsdEf~~vi~aLkG~----Ed 212 (532)
T KOG1954|consen 137 MCSQLPNQVLESVTIVDTPGILSGEKQRISRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFKRVIDALKGH----ED 212 (532)
T ss_pred HHhcCChhhhhheeeeccCcccccchhcccccCChHHHHHHHHHhccEEEEEechhhccccHHHHHHHHHhhCC----cc
Confidence 0 2588999999432 2333344567899999999997666556666666655443 33
Q ss_pred cEEEEeeCCCcccccC
Q 030429 116 PLLVLGNKIDKSEALS 131 (177)
Q Consensus 116 ~~iiv~nK~D~~~~~~ 131 (177)
.+-+|+||+|.++.++
T Consensus 213 kiRVVLNKADqVdtqq 228 (532)
T KOG1954|consen 213 KIRVVLNKADQVDTQQ 228 (532)
T ss_pred eeEEEeccccccCHHH
Confidence 5667899999988743
|
|
| >KOG0467 consensus Translation elongation factor 2/ribosome biogenesis protein RIA1 and related proteins [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.95 E-value=1.9e-09 Score=85.04 Aligned_cols=113 Identities=21% Similarity=0.286 Sum_probs=76.8
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHhcCCC--------------CCCCCCccceeEEE----EEeCCEEEEEEecCCchhh
Q 030429 9 FKQEMELSLIGLQNAGKTSLVNTIATGGY--------------SEDMIPTVGFNMRK----VTKGNVTIKLWDLGGQRRF 70 (177)
Q Consensus 9 ~~~~~~i~i~G~~~~GKSsli~~l~~~~~--------------~~~~~~t~~~~~~~----~~~~~~~~~~~D~~g~~~~ 70 (177)
.+.--+++++-+...|||||..+|+..+- .+...++-+++... ...+++.++++|.||+-+|
T Consensus 6 ~~~irn~~~vahvdhgktsladsl~asngvis~rlagkirfld~redeq~rgitmkss~is~~~~~~~~nlidspghvdf 85 (887)
T KOG0467|consen 6 SEGIRNICLVAHVDHGKTSLADSLVASNGVISSRLAGKIRFLDTREDEQTRGITMKSSAISLLHKDYLINLIDSPGHVDF 85 (887)
T ss_pred CCceeEEEEEEEecCCccchHHHHHhhccEechhhccceeeccccchhhhhceeeeccccccccCceEEEEecCCCccch
Confidence 34456899999999999999999983221 11111233333332 3347899999999999999
Q ss_pred HHhHHHHhcCCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCc
Q 030429 71 RTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDK 126 (177)
Q Consensus 71 ~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~ 126 (177)
.+.......-+|.+++++|+...---. ....+...+. .+...++|+||+|.
T Consensus 86 ~sevssas~l~d~alvlvdvvegv~~q-t~~vlrq~~~----~~~~~~lvinkidr 136 (887)
T KOG0467|consen 86 SSEVSSASRLSDGALVLVDVVEGVCSQ-TYAVLRQAWI----EGLKPILVINKIDR 136 (887)
T ss_pred hhhhhhhhhhcCCcEEEEeeccccchh-HHHHHHHHHH----ccCceEEEEehhhh
Confidence 999999999999999999995431111 1122222222 35667888999993
|
|
| >cd01858 NGP_1 NGP-1 | Back alignment and domain information |
|---|
Probab=98.94 E-value=3.4e-09 Score=70.59 Aligned_cols=53 Identities=26% Similarity=0.346 Sum_probs=34.1
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhcCCCCCC---CCCccceeEEEEEeCCEEEEEEecCC
Q 030429 11 QEMELSLIGLQNAGKTSLVNTIATGGYSED---MIPTVGFNMRKVTKGNVTIKLWDLGG 66 (177)
Q Consensus 11 ~~~~i~i~G~~~~GKSsli~~l~~~~~~~~---~~~t~~~~~~~~~~~~~~~~~~D~~g 66 (177)
...+|+++|.||+|||||+|++.+...... .+.|..... +.. +-.+.++||||
T Consensus 101 ~~~~v~~~G~~nvGKStliN~l~~~~~~~~~~~~g~T~~~~~--~~~-~~~~~liDtPG 156 (157)
T cd01858 101 KQISVGFIGYPNVGKSSIINTLRSKKVCKVAPIPGETKVWQY--ITL-MKRIYLIDCPG 156 (157)
T ss_pred cceEEEEEeCCCCChHHHHHHHhcCCceeeCCCCCeeEeEEE--EEc-CCCEEEEECcC
Confidence 467899999999999999999986543211 111221111 111 22467889998
|
Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus. |
| >cd01857 HSR1_MMR1 HSR1/MMR1 | Back alignment and domain information |
|---|
Probab=98.93 E-value=4e-09 Score=68.96 Aligned_cols=53 Identities=26% Similarity=0.347 Sum_probs=34.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCCC-CccceeEEEEEeCCEEEEEEecCCc
Q 030429 14 ELSLIGLQNAGKTSLVNTIATGGYSEDMI-PTVGFNMRKVTKGNVTIKLWDLGGQ 67 (177)
Q Consensus 14 ~i~i~G~~~~GKSsli~~l~~~~~~~~~~-~t~~~~~~~~~~~~~~~~~~D~~g~ 67 (177)
+++++|.+|+|||||+|++.+........ +........+..++ .+.+|||||-
T Consensus 85 ~~~~~G~~~vGKstlin~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~DtpG~ 138 (141)
T cd01857 85 TIGLVGYPNVGKSSLINALVGKKKVSVSATPGKTKHFQTIFLTP-TITLCDCPGL 138 (141)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCceeeCCCCCcccceEEEEeCC-CEEEEECCCc
Confidence 89999999999999999999765432111 11111222233333 5789999994
|
Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus. |
| >cd01849 YlqF_related_GTPase YlqF-related GTPases | Back alignment and domain information |
|---|
Probab=98.92 E-value=9.8e-09 Score=68.22 Aligned_cols=82 Identities=21% Similarity=0.198 Sum_probs=54.8
Q ss_pred CEEEEEEeCCCCCCHHHHHHHHH-HHHcCCCCCCCcEEEEeeCCCcccccCHHHHHHHhCcccccCCceeEEEeeecCCC
Q 030429 82 SAILYVVDAADRDSVPIARSELH-ELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCKDSI 160 (177)
Q Consensus 82 d~~i~v~d~~~~~~~~~~~~~~~-~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 160 (177)
|++++|+|+.++.+... .++. ..... .++|+++|+||+|+.+.+...++...+... ....++++||+++.
T Consensus 1 Dvvl~VvD~~~p~~~~~--~~i~~~~~~~---~~~p~IiVlNK~Dl~~~~~~~~~~~~~~~~----~~~~ii~vSa~~~~ 71 (155)
T cd01849 1 DVILEVLDARDPLGTRS--PDIERVLIKE---KGKKLILVLNKADLVPKEVLRKWLAYLRHS----YPTIPFKISATNGQ 71 (155)
T ss_pred CEEEEEEeccCCccccC--HHHHHHHHhc---CCCCEEEEEechhcCCHHHHHHHHHHHHhh----CCceEEEEeccCCc
Confidence 78999999988754432 2222 22222 468999999999997653333333222211 12358899999999
Q ss_pred ChHHHHHHHHHH
Q 030429 161 NIDAVIDWLIKH 172 (177)
Q Consensus 161 ~i~~l~~~l~~~ 172 (177)
|++++.+.+.+.
T Consensus 72 gi~~L~~~i~~~ 83 (155)
T cd01849 72 GIEKKESAFTKQ 83 (155)
T ss_pred ChhhHHHHHHHH
Confidence 999999998764
|
These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases. |
| >cd01856 YlqF YlqF | Back alignment and domain information |
|---|
Probab=98.92 E-value=8.7e-09 Score=69.59 Aligned_cols=98 Identities=14% Similarity=0.126 Sum_probs=64.6
Q ss_pred cCCc-hhhHHhHHHHhcCCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccCHHHHHHHhCcc
Q 030429 64 LGGQ-RRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLE 142 (177)
Q Consensus 64 ~~g~-~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~ 142 (177)
.||+ .+........++.+|++++|+|++++...... .+.... .+.|.++|+||+|+.+.....++.+.+..
T Consensus 2 ~~~~~~~~~~~~~~~i~~aD~il~v~D~~~~~~~~~~--~i~~~~-----~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~- 73 (171)
T cd01856 2 FPGHMAKALRQIKEKLKLVDLVIEVRDARIPLSSRNP--LLEKIL-----GNKPRIIVLNKADLADPKKTKKWLKYFES- 73 (171)
T ss_pred CchHHHHHHHHHHHHHhhCCEEEEEeeccCccCcCCh--hhHhHh-----cCCCEEEEEehhhcCChHHHHHHHHHHHh-
Confidence 3443 34556667778999999999999876432221 111111 24789999999999654322222222221
Q ss_pred cccCCceeEEEeeecCCCChHHHHHHHHHHh
Q 030429 143 SITDREVCCYMISCKDSINIDAVIDWLIKHS 173 (177)
Q Consensus 143 ~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~ 173 (177)
....++.+||+++.|++++.+.+...+
T Consensus 74 ----~~~~vi~iSa~~~~gi~~L~~~l~~~l 100 (171)
T cd01856 74 ----KGEKVLFVNAKSGKGVKKLLKAAKKLL 100 (171)
T ss_pred ----cCCeEEEEECCCcccHHHHHHHHHHHH
Confidence 123578999999999999999998865
|
Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes. |
| >KOG2486 consensus Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.91 E-value=4.8e-09 Score=74.14 Aligned_cols=157 Identities=17% Similarity=0.162 Sum_probs=91.8
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCC-ccc-eeEEEEEeCCEEEEEEecCC----------chhhHHhHHH
Q 030429 9 FKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIP-TVG-FNMRKVTKGNVTIKLWDLGG----------QRRFRTMWER 76 (177)
Q Consensus 9 ~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~-t~~-~~~~~~~~~~~~~~~~D~~g----------~~~~~~~~~~ 76 (177)
..+..++++.|..++|||||+|.++.......... ..+ .+......-+..+.++|.|| ..+...+...
T Consensus 133 k~~~pe~~~~g~SNVGKSSLln~~~r~k~~~~t~k~K~g~Tq~in~f~v~~~~~~vDlPG~~~a~y~~~~~~d~~~~t~~ 212 (320)
T KOG2486|consen 133 KDKRPELAFYGRSNVGKSSLLNDLVRVKNIADTSKSKNGKTQAINHFHVGKSWYEVDLPGYGRAGYGFELPADWDKFTKS 212 (320)
T ss_pred CCCCceeeeecCCcccHHHHHhhhhhhhhhhhhcCCCCccceeeeeeeccceEEEEecCCcccccCCccCcchHhHhHHH
Confidence 45678999999999999999999996655444333 211 22222333455778889999 1222333334
Q ss_pred Hhc---CCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccC--H----HHHHH---HhCcccc
Q 030429 77 YCR---GVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALS--K----QALVD---QLGLESI 144 (177)
Q Consensus 77 ~~~---~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~--~----~~~~~---~~~~~~~ 144 (177)
|+. .--.+++++|++-+ +.........++.. .+.|.-+|.||||...... . ..... .+. ...
T Consensus 213 Y~leR~nLv~~FLLvd~sv~--i~~~D~~~i~~~ge---~~VP~t~vfTK~DK~k~~~~~~kKp~~~i~~~f~~l~-~~~ 286 (320)
T KOG2486|consen 213 YLLERENLVRVFLLVDASVP--IQPTDNPEIAWLGE---NNVPMTSVFTKCDKQKKVKRTGKKPGLNIKINFQGLI-RGV 286 (320)
T ss_pred HHHhhhhhheeeeeeeccCC--CCCCChHHHHHHhh---cCCCeEEeeehhhhhhhccccccCccccceeehhhcc-ccc
Confidence 432 23356677777643 22222222333333 4799999999999754321 0 11111 111 111
Q ss_pred cCCceeEEEeeecCCCChHHHHHHHHH
Q 030429 145 TDREVCCYMISCKDSINIDAVIDWLIK 171 (177)
Q Consensus 145 ~~~~~~~~~~Sa~~~~~i~~l~~~l~~ 171 (177)
.....+++.+|+.++.|+++|+=.+.+
T Consensus 287 f~~~~Pw~~~Ssvt~~Grd~Ll~~i~q 313 (320)
T KOG2486|consen 287 FLVDLPWIYVSSVTSLGRDLLLLHIAQ 313 (320)
T ss_pred eeccCCceeeecccccCceeeeeehhh
Confidence 122346778999999999998766554
|
|
| >PRK12288 GTPase RsgA; Reviewed | Back alignment and domain information |
|---|
Probab=98.90 E-value=1.3e-08 Score=75.86 Aligned_cols=89 Identities=19% Similarity=0.175 Sum_probs=63.7
Q ss_pred hcCCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccCHHHHHHHhCcccccCCceeEEEeeec
Q 030429 78 CRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCK 157 (177)
Q Consensus 78 ~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 157 (177)
....|.+++|++.+...++..+..|+..... .++|.++|+||+|+.+....+...+.... +...+.+++++||+
T Consensus 118 aANvD~vlIV~s~~p~~s~~~Ldr~L~~a~~----~~i~~VIVlNK~DL~~~~~~~~~~~~~~~--y~~~g~~v~~vSA~ 191 (347)
T PRK12288 118 AANIDQIVIVSAVLPELSLNIIDRYLVACET----LGIEPLIVLNKIDLLDDEGRAFVNEQLDI--YRNIGYRVLMVSSH 191 (347)
T ss_pred EEEccEEEEEEeCCCCCCHHHHHHHHHHHHh----cCCCEEEEEECccCCCcHHHHHHHHHHHH--HHhCCCeEEEEeCC
Confidence 4558999999999888888888888775432 36899999999999765322222221111 11123479999999
Q ss_pred CCCChHHHHHHHHHH
Q 030429 158 DSINIDAVIDWLIKH 172 (177)
Q Consensus 158 ~~~~i~~l~~~l~~~ 172 (177)
++.|+++|++.|...
T Consensus 192 tg~GideL~~~L~~k 206 (347)
T PRK12288 192 TGEGLEELEAALTGR 206 (347)
T ss_pred CCcCHHHHHHHHhhC
Confidence 999999999998753
|
|
| >cd04178 Nucleostemin_like Nucleostemin-like | Back alignment and domain information |
|---|
Probab=98.90 E-value=5.4e-09 Score=70.50 Aligned_cols=52 Identities=23% Similarity=0.332 Sum_probs=35.2
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCCCC---CCCccceeEEEEEeCCEEEEEEecCC
Q 030429 12 EMELSLIGLQNAGKTSLVNTIATGGYSED---MIPTVGFNMRKVTKGNVTIKLWDLGG 66 (177)
Q Consensus 12 ~~~i~i~G~~~~GKSsli~~l~~~~~~~~---~~~t~~~~~~~~~~~~~~~~~~D~~g 66 (177)
.++++++|.||+|||||+|++.+...... .+.|...... .. +..+.++||||
T Consensus 117 ~~~~~~vG~pnvGKSslin~l~~~~~~~~~~~pg~T~~~~~~--~~-~~~~~l~DtPG 171 (172)
T cd04178 117 SITVGVVGFPNVGKSSLINSLKRSRACNVGATPGVTKSMQEV--HL-DKKVKLLDSPG 171 (172)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCcccceecCCCCeEcceEEE--Ee-CCCEEEEECcC
Confidence 47999999999999999999996543211 1122222222 22 23678999998
|
Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the |
| >TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF | Back alignment and domain information |
|---|
Probab=98.90 E-value=1.4e-08 Score=73.75 Aligned_cols=100 Identities=18% Similarity=0.177 Sum_probs=67.1
Q ss_pred cCCch-hhHHhHHHHhcCCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccCHHHHHHHhCcc
Q 030429 64 LGGQR-RFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLE 142 (177)
Q Consensus 64 ~~g~~-~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~ 142 (177)
.|||- +........+..+|++++|+|+.++.+... ..+.... .+.|+++|+||+|+.+.....++.+.+..
T Consensus 4 fpgHm~k~~~~~~~~l~~aDvVl~V~Dar~p~~~~~--~~i~~~l-----~~kp~IiVlNK~DL~~~~~~~~~~~~~~~- 75 (276)
T TIGR03596 4 FPGHMAKARREIKEKLKLVDVVIEVLDARIPLSSRN--PMIDEIR-----GNKPRLIVLNKADLADPAVTKQWLKYFEE- 75 (276)
T ss_pred ChHHHHHHHHHHHHHHhhCCEEEEEEeCCCCCCCCC--hhHHHHH-----CCCCEEEEEEccccCCHHHHHHHHHHHHH-
Confidence 45643 344556677889999999999977644322 1222222 25799999999999754323333333321
Q ss_pred cccCCceeEEEeeecCCCChHHHHHHHHHHhhh
Q 030429 143 SITDREVCCYMISCKDSINIDAVIDWLIKHSKT 175 (177)
Q Consensus 143 ~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~ 175 (177)
.+.+++++||+++.|++++.+.+.+.+.+
T Consensus 76 ----~~~~vi~iSa~~~~gi~~L~~~i~~~~~~ 104 (276)
T TIGR03596 76 ----KGIKALAINAKKGKGVKKIIKAAKKLLKE 104 (276)
T ss_pred ----cCCeEEEEECCCcccHHHHHHHHHHHHHH
Confidence 12368999999999999999999887643
|
Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members. |
| >TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH | Back alignment and domain information |
|---|
Probab=98.88 E-value=5.3e-09 Score=78.53 Aligned_cols=99 Identities=24% Similarity=0.307 Sum_probs=63.7
Q ss_pred chhhHHhHHHHhcCCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccc-CHHHHHHHhCc--cc
Q 030429 67 QRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEAL-SKQALVDQLGL--ES 143 (177)
Q Consensus 67 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~-~~~~~~~~~~~--~~ 143 (177)
+++|......+...++++++|+|+.+...- |...+.... ...|+++|+||+|+.+.. ..++..+.+.. ..
T Consensus 50 ~e~f~~~l~~~~~~~~~Il~VvD~~d~~~s-----~~~~l~~~~--~~~piilV~NK~DLl~k~~~~~~~~~~l~~~~k~ 122 (360)
T TIGR03597 50 DDDFLNLLNSLGDSNALIVYVVDIFDFEGS-----LIPELKRFV--GGNPVLLVGNKIDLLPKSVNLSKIKEWMKKRAKE 122 (360)
T ss_pred HHHHHHHHhhcccCCcEEEEEEECcCCCCC-----ccHHHHHHh--CCCCEEEEEEchhhCCCCCCHHHHHHHHHHHHHH
Confidence 567888888888899999999999775311 112221111 257999999999987543 22222221110 00
Q ss_pred ccCCceeEEEeeecCCCChHHHHHHHHHH
Q 030429 144 ITDREVCCYMISCKDSINIDAVIDWLIKH 172 (177)
Q Consensus 144 ~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~ 172 (177)
.......++++||++|.|++++++.|.+.
T Consensus 123 ~g~~~~~i~~vSAk~g~gv~eL~~~l~~~ 151 (360)
T TIGR03597 123 LGLKPVDIILVSAKKGNGIDELLDKIKKA 151 (360)
T ss_pred cCCCcCcEEEecCCCCCCHHHHHHHHHHH
Confidence 00111248899999999999999999764
|
This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli. |
| >COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.87 E-value=2.4e-07 Score=60.62 Aligned_cols=147 Identities=21% Similarity=0.240 Sum_probs=79.5
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEeCC--EEEEEEecCC---------------------
Q 030429 10 KQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTKGN--VTIKLWDLGG--------------------- 66 (177)
Q Consensus 10 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~--~~~~~~D~~g--------------------- 66 (177)
+..+||.+.|+|||||||++.++.+.- .......-++.+.++..++ .-|.+.|+..
T Consensus 3 ~~~mki~ITG~PGvGKtTl~~ki~e~L-~~~g~kvgGf~t~EVR~gGkR~GF~Ivdl~tg~~~~la~~~~~~~rvGkY~V 81 (179)
T COG1618 3 KMAMKIFITGRPGVGKTTLVLKIAEKL-REKGYKVGGFITPEVREGGKRIGFKIVDLATGEEGILARVGFSRPRVGKYGV 81 (179)
T ss_pred CcceEEEEeCCCCccHHHHHHHHHHHH-HhcCceeeeEEeeeeecCCeEeeeEEEEccCCceEEEEEcCCCCcccceEEe
Confidence 456899999999999999999987321 1111223334444443332 3355555552
Q ss_pred -ch----hhHHhHHHHhcCCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccCHHHHHHHhCc
Q 030429 67 -QR----RFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGL 141 (177)
Q Consensus 67 -~~----~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~ 141 (177)
.+ -.....+.+++.+|++++ |= --.++.....+...+........|.+.++.+.+..+- .+++. ....
T Consensus 82 ~v~~le~i~~~al~rA~~~aDvIII--DE--IGpMElks~~f~~~ve~vl~~~kpliatlHrrsr~P~--v~~ik-~~~~ 154 (179)
T COG1618 82 NVEGLEEIAIPALRRALEEADVIII--DE--IGPMELKSKKFREAVEEVLKSGKPLIATLHRRSRHPL--VQRIK-KLGG 154 (179)
T ss_pred eHHHHHHHhHHHHHHHhhcCCEEEE--ec--ccchhhccHHHHHHHHHHhcCCCcEEEEEecccCChH--HHHhh-hcCC
Confidence 01 112233445666787664 32 2234433444444444433357888888887765222 11111 1111
Q ss_pred ccccCCceeEEEeeecCCCChHHHHHHHHHHhhh
Q 030429 142 ESITDREVCCYMISCKDSINIDAVIDWLIKHSKT 175 (177)
Q Consensus 142 ~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~ 175 (177)
.+++ .+.+|=+.++..+.+.+..
T Consensus 155 --------v~v~---lt~~NR~~i~~~Il~~L~~ 177 (179)
T COG1618 155 --------VYVF---LTPENRNRILNEILSVLKG 177 (179)
T ss_pred --------EEEE---EccchhhHHHHHHHHHhcc
Confidence 1333 5556666888888887764
|
|
| >KOG2655 consensus Septin family protein (P-loop GTPase) [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.87 E-value=5.5e-08 Score=71.82 Aligned_cols=116 Identities=18% Similarity=0.290 Sum_probs=68.2
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCCCC---------CCCccceeEEEEE--eCC--EEEEEEecCCchhh--------
Q 030429 12 EMELSLIGLQNAGKTSLVNTIATGGYSED---------MIPTVGFNMRKVT--KGN--VTIKLWDLGGQRRF-------- 70 (177)
Q Consensus 12 ~~~i~i~G~~~~GKSsli~~l~~~~~~~~---------~~~t~~~~~~~~~--~~~--~~~~~~D~~g~~~~-------- 70 (177)
.+.+.++|+.|.|||||+|+|+....... ...+..+...... .++ .+++++||||-.+.
T Consensus 21 ~ftlmvvG~sGlGKsTfiNsLf~~~l~~~~~~~~~~~~~~~t~~i~~~~~~iee~g~~l~LtvidtPGfGD~vdns~~w~ 100 (366)
T KOG2655|consen 21 DFTLMVVGESGLGKSTFINSLFLTDLSGNREVPGASERIKETVEIESTKVEIEENGVKLNLTVIDTPGFGDAVDNSNCWR 100 (366)
T ss_pred ceEEEEecCCCccHHHHHHHHHhhhccCCcccCCcccCccccceeeeeeeeecCCCeEEeeEEeccCCCcccccccccch
Confidence 48999999999999999999986643322 1123333333332 233 67889999992111
Q ss_pred ------HHhHHHH-----------hc--CCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccC
Q 030429 71 ------RTMWERY-----------CR--GVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALS 131 (177)
Q Consensus 71 ------~~~~~~~-----------~~--~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~ 131 (177)
.+....| +. ..|+++|.+..+... +..+.-.+..-+. ..+.+|-|+.|+|.....+
T Consensus 101 pi~~yi~~q~~~yl~~E~~~~R~~~~D~RVH~cLYFI~P~ghg-L~p~Di~~Mk~l~----~~vNiIPVI~KaD~lT~~E 175 (366)
T KOG2655|consen 101 PIVNYIDSQFDQYLDEESRLNRSKIKDNRVHCCLYFISPTGHG-LKPLDIEFMKKLS----KKVNLIPVIAKADTLTKDE 175 (366)
T ss_pred hhhHHHHHHHHHHHhhhccCCcccccCCceEEEEEEeCCCCCC-CcHhhHHHHHHHh----ccccccceeeccccCCHHH
Confidence 0111111 22 358999999865432 2222222222212 3678888999999876544
Q ss_pred H
Q 030429 132 K 132 (177)
Q Consensus 132 ~ 132 (177)
.
T Consensus 176 l 176 (366)
T KOG2655|consen 176 L 176 (366)
T ss_pred H
Confidence 3
|
|
| >KOG0448 consensus Mitofusin 1 GTPase, involved in mitochondrila biogenesis [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.85 E-value=1.1e-07 Score=74.75 Aligned_cols=145 Identities=17% Similarity=0.321 Sum_probs=81.8
Q ss_pred cccceeEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCCccc----------------------------------------
Q 030429 8 FFKQEMELSLIGLQNAGKTSLVNTIATGGY-SEDMIPTVG---------------------------------------- 46 (177)
Q Consensus 8 ~~~~~~~i~i~G~~~~GKSsli~~l~~~~~-~~~~~~t~~---------------------------------------- 46 (177)
..+...||+|.|..+.||||++|+++.... +...++++.
T Consensus 105 l~r~~mKV~ifGrts~GKSt~iNAmL~~klLP~g~gh~TncF~~VegadG~e~vl~~~~s~ek~d~~ti~~~~haL~~~~ 184 (749)
T KOG0448|consen 105 LARRHMKVAIFGRTSAGKSTVINAMLHKKLLPSGIGHTTNCFLEVEGADGAEAVLATEGSEEKIDMKTINQLAHALKPDK 184 (749)
T ss_pred HhhcccEEEEeCCCCCcHHHHHHHHHHHhhCcccccccceeeeeecccCCcceeeccCCCcccccHHHHhHHHHhcCccc
Confidence 356788999999999999999999984321 111111000
Q ss_pred -----eeEEEEEeCC------EEEEEEecCCch---hhHHhHHHHhcCCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCC
Q 030429 47 -----FNMRKVTKGN------VTIKLWDLGGQR---RFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSL 112 (177)
Q Consensus 47 -----~~~~~~~~~~------~~~~~~D~~g~~---~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~ 112 (177)
.-...+-.++ -++.++|.||-. ...+....+..++|++|+|.++.+. +......+......
T Consensus 185 ~~~~~sLlrV~~p~~~csLLrnDivliDsPGld~~se~tswid~~cldaDVfVlV~NaEnt--lt~sek~Ff~~vs~--- 259 (749)
T KOG0448|consen 185 DLGAGSLLRVFWPDDKCSLLRNDIVLIDSPGLDVDSELTSWIDSFCLDADVFVLVVNAENT--LTLSEKQFFHKVSE--- 259 (749)
T ss_pred ccCcceEEEEEecCccchhhhccceeccCCCCCCchhhhHHHHHHhhcCCeEEEEecCccH--hHHHHHHHHHHhhc---
Confidence 0000000011 257788999943 3344445677889999999998553 33333333332222
Q ss_pred CCCcEEEEeeCCCcccc--cCHHHHHHHhC---cccccCCceeEEEeeec
Q 030429 113 SGIPLLVLGNKIDKSEA--LSKQALVDQLG---LESITDREVCCYMISCK 157 (177)
Q Consensus 113 ~~~~~iiv~nK~D~~~~--~~~~~~~~~~~---~~~~~~~~~~~~~~Sa~ 157 (177)
.+..++|+.||+|.... +..+.+.++.. -.....-.-.+|++|++
T Consensus 260 ~KpniFIlnnkwDasase~ec~e~V~~Qi~eL~v~~~~eA~DrvfFVS~~ 309 (749)
T KOG0448|consen 260 EKPNIFILNNKWDASASEPECKEDVLKQIHELSVVTEKEAADRVFFVSAK 309 (749)
T ss_pred cCCcEEEEechhhhhcccHHHHHHHHHHHHhcCcccHhhhcCeeEEEecc
Confidence 24456667799998654 23344444422 11111223357889965
|
|
| >cd01856 YlqF YlqF | Back alignment and domain information |
|---|
Probab=98.82 E-value=1.4e-08 Score=68.53 Aligned_cols=57 Identities=21% Similarity=0.303 Sum_probs=37.5
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcCCCCCC-CCCccceeEEEEEeCCEEEEEEecCCc
Q 030429 10 KQEMELSLIGLQNAGKTSLVNTIATGGYSED-MIPTVGFNMRKVTKGNVTIKLWDLGGQ 67 (177)
Q Consensus 10 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~D~~g~ 67 (177)
+..++++++|.+|+|||||+|++.+..+... ..+........+..+ ..+.+|||||.
T Consensus 113 ~~~~~~~~~G~~~vGKstlin~l~~~~~~~~~~~~~~T~~~~~~~~~-~~~~~iDtpG~ 170 (171)
T cd01856 113 PRGIRAMVVGIPNVGKSTLINRLRGKKVAKVGNKPGVTKGIQWIKIS-PGIYLLDTPGI 170 (171)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHhCCCceeecCCCCEEeeeEEEEec-CCEEEEECCCC
Confidence 4557999999999999999999997665321 111111222223332 45789999993
|
Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes. |
| >TIGR00092 GTP-binding protein YchF | Back alignment and domain information |
|---|
Probab=98.82 E-value=4.6e-08 Score=72.91 Aligned_cols=80 Identities=21% Similarity=0.202 Sum_probs=56.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCC-CCC--CCCccceeEEEEEeCC-----------------EEEEEEecCCchhh--
Q 030429 13 MELSLIGLQNAGKTSLVNTIATGGY-SED--MIPTVGFNMRKVTKGN-----------------VTIKLWDLGGQRRF-- 70 (177)
Q Consensus 13 ~~i~i~G~~~~GKSsli~~l~~~~~-~~~--~~~t~~~~~~~~~~~~-----------------~~~~~~D~~g~~~~-- 70 (177)
++++++|.|++|||||++.+++... ... ...|.......+...+ ..+.+.|+||....
T Consensus 3 lk~GivGlPn~GKSTlfnaLT~~~~~~~a~ypftTi~p~~g~v~v~d~r~d~L~~~~~~~~~~~a~i~~~DiaGlv~gAs 82 (368)
T TIGR00092 3 LSGGIVGLPNVGKSTLFAATTNLLGNEAANPPFTTIEPNAGVVNPSDPRLDLLAIYIKPEKVPPTTTEFVDIAGLVGGAS 82 (368)
T ss_pred ceEEEECCCCCChHHHHHHHhCCCccccCCCCCCCCCCceeEEEechhHHHHHHHHhCCcCcCCceEEEEeccccccchh
Confidence 7899999999999999999997765 332 2234454444443322 46889999994332
Q ss_pred -----HHhHHHHhcCCCEEEEEEeCCC
Q 030429 71 -----RTMWERYCRGVSAILYVVDAAD 92 (177)
Q Consensus 71 -----~~~~~~~~~~~d~~i~v~d~~~ 92 (177)
-...-..++.+|+++.|+++.+
T Consensus 83 ~g~Glgn~fL~~ir~~d~l~hVvr~f~ 109 (368)
T TIGR00092 83 KGEGLGNQFLANIREVDIIQHVVRCFE 109 (368)
T ss_pred cccCcchHHHHHHHhCCEEEEEEeCCC
Confidence 1233446788999999999854
|
This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor. |
| >KOG1547 consensus Septin CDC10 and related P-loop GTPases [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms; Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.81 E-value=1.4e-07 Score=65.64 Aligned_cols=125 Identities=15% Similarity=0.251 Sum_probs=70.0
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcCCCCCC---------CCCccceeEEE--EEeCC--EEEEEEecCCc---------
Q 030429 10 KQEMELSLIGLQNAGKTSLVNTIATGGYSED---------MIPTVGFNMRK--VTKGN--VTIKLWDLGGQ--------- 67 (177)
Q Consensus 10 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~---------~~~t~~~~~~~--~~~~~--~~~~~~D~~g~--------- 67 (177)
--.++|.++|.+|.|||||+|.+........ ...|.++.... +.-++ .+++++||||-
T Consensus 44 GF~FNIMVVgqSglgkstlinTlf~s~v~~~s~~~~~~~p~pkT~eik~~thvieE~gVklkltviDTPGfGDqInN~nc 123 (336)
T KOG1547|consen 44 GFDFNIMVVGQSGLGKSTLINTLFKSHVSDSSSSDNSAEPIPKTTEIKSITHVIEEKGVKLKLTVIDTPGFGDQINNDNC 123 (336)
T ss_pred cCceEEEEEecCCCCchhhHHHHHHHHHhhccCCCcccCcccceEEEEeeeeeeeecceEEEEEEecCCCcccccCccch
Confidence 3468999999999999999999985433221 22233333332 33344 46778999992
Q ss_pred ---------hhhHHhHHH--------HhcC--CCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccc
Q 030429 68 ---------RRFRTMWER--------YCRG--VSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSE 128 (177)
Q Consensus 68 ---------~~~~~~~~~--------~~~~--~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~ 128 (177)
+++...++. .+.+ .+++++.+..+..+--.-....+..+.+ -..++-|+.|+|...
T Consensus 124 WePI~kyIneQye~yL~eElni~R~kripDTRVHcclyFi~ptGhsLrplDieflkrLt~-----vvNvvPVIakaDtlT 198 (336)
T KOG1547|consen 124 WEPIEKYINEQYEQYLREELNIAREKRIPDTRVHCCLYFIPPTGHSLRPLDIEFLKRLTE-----VVNVVPVIAKADTLT 198 (336)
T ss_pred hHHHHHHHHHHHHHHHHHHHhHHhhhcCCCceEEEEEEEeCCCCCccCcccHHHHHHHhh-----hheeeeeEeeccccc
Confidence 112111111 1222 4788888877653321111222223222 356778889999876
Q ss_pred ccCHHHHHHHh
Q 030429 129 ALSKQALVDQL 139 (177)
Q Consensus 129 ~~~~~~~~~~~ 139 (177)
-++..++.++.
T Consensus 199 leEr~~FkqrI 209 (336)
T KOG1547|consen 199 LEERSAFKQRI 209 (336)
T ss_pred HHHHHHHHHHH
Confidence 55544444433
|
|
| >cd01855 YqeH YqeH | Back alignment and domain information |
|---|
Probab=98.81 E-value=1.1e-08 Score=70.35 Aligned_cols=26 Identities=23% Similarity=0.501 Sum_probs=22.8
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhcCC
Q 030429 11 QEMELSLIGLQNAGKTSLVNTIATGG 36 (177)
Q Consensus 11 ~~~~i~i~G~~~~GKSsli~~l~~~~ 36 (177)
+..+++++|.+|+|||||+|++.+..
T Consensus 126 ~~~~~~~~G~~nvGKStliN~l~~~~ 151 (190)
T cd01855 126 KGGDVYVVGATNVGKSTLINALLKKD 151 (190)
T ss_pred cCCcEEEEcCCCCCHHHHHHHHHHhc
Confidence 45689999999999999999999654
|
YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. |
| >KOG0447 consensus Dynamin-like GTP binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.79 E-value=7.3e-07 Score=68.94 Aligned_cols=99 Identities=17% Similarity=0.230 Sum_probs=68.0
Q ss_pred EEEEEecCCc-------------hhhHHhHHHHhcCCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCC
Q 030429 58 TIKLWDLGGQ-------------RRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKI 124 (177)
Q Consensus 58 ~~~~~D~~g~-------------~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~ 124 (177)
+..++|+||. +....+...++...+++|+|+--. +.+.-+....++.....-.+...|+|+||+
T Consensus 413 RMVLVDLPGvIsTvT~dMA~dTKd~I~~msKayM~NPNAIILCIQDG---SVDAERSnVTDLVsq~DP~GrRTIfVLTKV 489 (980)
T KOG0447|consen 413 RMVLVDLPGVINTVTSGMAPDTKETIFSISKAYMQNPNAIILCIQDG---SVDAERSIVTDLVSQMDPHGRRTIFVLTKV 489 (980)
T ss_pred eeEEecCCchhhhhcccccccchHHHHHHHHHHhcCCCeEEEEeccC---CcchhhhhHHHHHHhcCCCCCeeEEEEeec
Confidence 4567899992 233455667899999999999532 344445555555555555678899999999
Q ss_pred Ccccc--cCHHHHHHHhCcccccCCceeEEEeeecCC
Q 030429 125 DKSEA--LSKQALVDQLGLESITDREVCCYMISCKDS 159 (177)
Q Consensus 125 D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 159 (177)
|+.+. ..+..+.+.+.-..+.-+...||.+-.-.|
T Consensus 490 DlAEknlA~PdRI~kIleGKLFPMKALGYfaVVTGrG 526 (980)
T KOG0447|consen 490 DLAEKNVASPSRIQQIIEGKLFPMKALGYFAVVTGKG 526 (980)
T ss_pred chhhhccCCHHHHHHHHhcCccchhhcceeEEEecCC
Confidence 99875 456777777766666556666776655444
|
|
| >TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF | Back alignment and domain information |
|---|
Probab=98.77 E-value=2.8e-08 Score=72.15 Aligned_cols=55 Identities=22% Similarity=0.301 Sum_probs=37.1
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcCCCCCC---CCCccceeEEEEEeCCEEEEEEecCCc
Q 030429 10 KQEMELSLIGLQNAGKTSLVNTIATGGYSED---MIPTVGFNMRKVTKGNVTIKLWDLGGQ 67 (177)
Q Consensus 10 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~---~~~t~~~~~~~~~~~~~~~~~~D~~g~ 67 (177)
...++++++|.||+|||||+|++.+...... ...|.... .+..+ -.+.++||||.
T Consensus 116 ~~~~~~~~vG~~nvGKSslin~l~~~~~~~~~~~~g~T~~~~--~~~~~-~~~~l~DtPG~ 173 (276)
T TIGR03596 116 NRPIRAMIVGIPNVGKSTLINRLAGKKVAKVGNRPGVTKGQQ--WIKLS-DGLELLDTPGI 173 (276)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHhCCCccccCCCCCeecceE--EEEeC-CCEEEEECCCc
Confidence 3468999999999999999999986543222 11222222 22232 25789999995
|
Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members. |
| >PRK09563 rbgA GTPase YlqF; Reviewed | Back alignment and domain information |
|---|
Probab=98.76 E-value=5.7e-08 Score=70.94 Aligned_cols=100 Identities=16% Similarity=0.170 Sum_probs=66.9
Q ss_pred cCCch-hhHHhHHHHhcCCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccCHHHHHHHhCcc
Q 030429 64 LGGQR-RFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLE 142 (177)
Q Consensus 64 ~~g~~-~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~ 142 (177)
.|||- +........+..+|++++|+|+.++.+... .++..... +.|+++|+||+|+.+....+.+.+.+..
T Consensus 7 fpgHm~k~~~~l~~~l~~aDvIL~VvDar~p~~~~~--~~l~~~~~-----~kp~iiVlNK~DL~~~~~~~~~~~~~~~- 78 (287)
T PRK09563 7 FPGHMAKARREIKENLKLVDVVIEVLDARIPLSSEN--PMIDKIIG-----NKPRLLILNKSDLADPEVTKKWIEYFEE- 78 (287)
T ss_pred cHHHHHHHHHHHHHHhhhCCEEEEEEECCCCCCCCC--hhHHHHhC-----CCCEEEEEEchhcCCHHHHHHHHHHHHH-
Confidence 56653 334555667889999999999977644322 22333321 5799999999999654323333333321
Q ss_pred cccCCceeEEEeeecCCCChHHHHHHHHHHhhh
Q 030429 143 SITDREVCCYMISCKDSINIDAVIDWLIKHSKT 175 (177)
Q Consensus 143 ~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~ 175 (177)
...+++.+|++++.|++++.+.+.+.+.+
T Consensus 79 ----~~~~vi~vSa~~~~gi~~L~~~l~~~l~~ 107 (287)
T PRK09563 79 ----QGIKALAINAKKGQGVKKILKAAKKLLKE 107 (287)
T ss_pred ----cCCeEEEEECCCcccHHHHHHHHHHHHHH
Confidence 12367899999999999999998887643
|
|
| >PRK09563 rbgA GTPase YlqF; Reviewed | Back alignment and domain information |
|---|
Probab=98.76 E-value=3.2e-08 Score=72.23 Aligned_cols=55 Identities=22% Similarity=0.293 Sum_probs=37.1
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcCCCCCC-C--CCccceeEEEEEeCCEEEEEEecCCc
Q 030429 10 KQEMELSLIGLQNAGKTSLVNTIATGGYSED-M--IPTVGFNMRKVTKGNVTIKLWDLGGQ 67 (177)
Q Consensus 10 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~-~--~~t~~~~~~~~~~~~~~~~~~D~~g~ 67 (177)
+..++++++|.||+|||||+|++.+...... . ..|.... .+.. +..+.++||||.
T Consensus 119 ~~~~~~~~~G~pnvGKSsliN~l~~~~~~~~~~~~g~T~~~~--~~~~-~~~~~l~DtPGi 176 (287)
T PRK09563 119 PRAIRAMIIGIPNVGKSTLINRLAGKKIAKTGNRPGVTKAQQ--WIKL-GKGLELLDTPGI 176 (287)
T ss_pred cCceEEEEECCCCCCHHHHHHHHhcCCccccCCCCCeEEEEE--EEEe-CCcEEEEECCCc
Confidence 4568999999999999999999997553221 1 1122222 2222 235789999994
|
|
| >cd01859 MJ1464 MJ1464 | Back alignment and domain information |
|---|
Probab=98.75 E-value=4.3e-08 Score=65.17 Aligned_cols=55 Identities=25% Similarity=0.434 Sum_probs=36.8
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEE-EEEeCCEEEEEEecCC
Q 030429 11 QEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMR-KVTKGNVTIKLWDLGG 66 (177)
Q Consensus 11 ~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~D~~g 66 (177)
...+++++|.+|+|||||+|++.+... ....++.+.+.. ..-..+..+.+|||||
T Consensus 100 ~~~~~~~ig~~~~Gkssl~~~l~~~~~-~~~~~~~~~t~~~~~~~~~~~~~~~DtpG 155 (156)
T cd01859 100 KEGKVGVVGYPNVGKSSIINALKGRHS-ASTSPSPGYTKGEQLVKITSKIYLLDTPG 155 (156)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCc-cccCCCCCeeeeeEEEEcCCCEEEEECcC
Confidence 467899999999999999999985442 222333333221 1111234789999998
|
This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus. |
| >cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain | Back alignment and domain information |
|---|
Probab=98.75 E-value=4.4e-07 Score=63.89 Aligned_cols=84 Identities=20% Similarity=0.126 Sum_probs=55.0
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcC--CCCCC---CCCccceeEEEEEe---CCEEEEEEecCCchhhH------HhHH
Q 030429 10 KQEMELSLIGLQNAGKTSLVNTIATG--GYSED---MIPTVGFNMRKVTK---GNVTIKLWDLGGQRRFR------TMWE 75 (177)
Q Consensus 10 ~~~~~i~i~G~~~~GKSsli~~l~~~--~~~~~---~~~t~~~~~~~~~~---~~~~~~~~D~~g~~~~~------~~~~ 75 (177)
.+..-|.++|++++|||+|+|++++. .+... ...|.++-...... .+..+.++||+|..... ....
T Consensus 5 ~~v~vvsv~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~gi~~~~~~~~~~~~~~v~~lDteG~~~~~~~~~~~~~~~ 84 (224)
T cd01851 5 FPVAVVSVFGPQSSGKSFLLNHLFGTLSGFDVMDTSQQTTKGIWMWSVPFKLGKEHAVLLLDTEGTDGRERGEFEDDARL 84 (224)
T ss_pred CCEEEEEEECCCCCCHHHHHHHHhCCCCCeEecCCCCCCccceEEEeccccCCCcceEEEEecCCcCccccCchhhhhHH
Confidence 34567899999999999999999987 54322 23345544444333 35789999999954321 1112
Q ss_pred HHhcC--CCEEEEEEeCCCC
Q 030429 76 RYCRG--VSAILYVVDAADR 93 (177)
Q Consensus 76 ~~~~~--~d~~i~v~d~~~~ 93 (177)
..+.. ++++++..+.+..
T Consensus 85 ~~l~~llss~~i~n~~~~~~ 104 (224)
T cd01851 85 FALATLLSSVLIYNSWETIL 104 (224)
T ss_pred HHHHHHHhCEEEEeccCccc
Confidence 22333 7899988887554
|
Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein |
| >KOG0463 consensus GTP-binding protein GP-1 [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.74 E-value=8.4e-08 Score=70.86 Aligned_cols=154 Identities=19% Similarity=0.250 Sum_probs=95.5
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCC------------------CCCCCccceeEEEEE--------------------
Q 030429 12 EMELSLIGLQNAGKTSLVNTIATGGYS------------------EDMIPTVGFNMRKVT-------------------- 53 (177)
Q Consensus 12 ~~~i~i~G~~~~GKSsli~~l~~~~~~------------------~~~~~t~~~~~~~~~-------------------- 53 (177)
.++|+++|...+|||||+-.|.++... ....+..+-++..++
T Consensus 133 E~RVAVVGNVDAGKSTLLGVLTHgeLDnGRG~ARqkLFRHKHEiESGRTSSVGNDILGFD~~GNvVNKPD~Hg~~LdWvk 212 (641)
T KOG0463|consen 133 EARVAVVGNVDAGKSTLLGVLTHGELDNGRGAARQKLFRHKHEIESGRTSSVGNDILGFDVHGNVVNKPDPHGHNLDWVK 212 (641)
T ss_pred eEEEEEEecccCCcceeEeeeeecccccCccHHHHHHhhhhhhcccCccccccccceeeccccccccCCCCCCCccccee
Confidence 589999999999999999888754321 111222222222211
Q ss_pred ---eCCEEEEEEecCCchhhHHhHHHHhcC--CCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccc
Q 030429 54 ---KGNVTIKLWDLGGQRRFRTMWERYCRG--VSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSE 128 (177)
Q Consensus 54 ---~~~~~~~~~D~~g~~~~~~~~~~~~~~--~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~ 128 (177)
....-+.++|++|+++|-......+.+ .|...+++-++..- ....+..+.-.+ ....|+++|+||+|..+
T Consensus 213 Ice~saKviTFIDLAGHEkYLKTTvFGMTGH~PDf~MLMiGaNaGI-iGmTKEHLgLAL----aL~VPVfvVVTKIDMCP 287 (641)
T KOG0463|consen 213 ICEDSAKVITFIDLAGHEKYLKTTVFGMTGHMPDFTMLMIGANAGI-IGMTKEHLGLAL----ALHVPVFVVVTKIDMCP 287 (641)
T ss_pred eccccceeEEEEeccchhhhhheeeeccccCCCCceEEEecccccc-eeccHHhhhhhh----hhcCcEEEEEEeeccCc
Confidence 112357789999999997655444433 57888888765431 111122222221 23799999999999988
Q ss_pred ccCHHHHHHHhCc-------------------------ccccCCceeEEEeeecCCCChHHHHHHHH
Q 030429 129 ALSKQALVDQLGL-------------------------ESITDREVCCYMISCKDSINIDAVIDWLI 170 (177)
Q Consensus 129 ~~~~~~~~~~~~~-------------------------~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~ 170 (177)
....++..+.+.. .+...+-+|+|.+|--+|.|++.|..+|.
T Consensus 288 ANiLqEtmKll~rllkS~gcrK~PvlVrs~DDVv~~A~NF~Ser~CPIFQvSNVtG~NL~LLkmFLN 354 (641)
T KOG0463|consen 288 ANILQETMKLLTRLLKSPGCRKLPVLVRSMDDVVHAAVNFPSERVCPIFQVSNVTGTNLPLLKMFLN 354 (641)
T ss_pred HHHHHHHHHHHHHHhcCCCcccCcEEEecccceEEeeccCccccccceEEeccccCCChHHHHHHHh
Confidence 6555443333211 11223467899999999999988876654
|
|
| >KOG0459 consensus Polypeptide release factor 3 [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.74 E-value=6.1e-09 Score=77.06 Aligned_cols=160 Identities=18% Similarity=0.164 Sum_probs=101.7
Q ss_pred cccceeEEEEEcCCCCCHHHHHHHHhc---------------------------------CCCCCCCCCccceeEEEEEe
Q 030429 8 FFKQEMELSLIGLQNAGKTSLVNTIAT---------------------------------GGYSEDMIPTVGFNMRKVTK 54 (177)
Q Consensus 8 ~~~~~~~i~i~G~~~~GKSsli~~l~~---------------------------------~~~~~~~~~t~~~~~~~~~~ 54 (177)
.++..++++++|....||||+-..+.. ..-.+....|.+.....++.
T Consensus 75 ~pk~hvn~vfighVdagkstigg~il~ltg~Vd~Rt~ekyereake~~rEswylsW~ldtn~EeR~kgKtvEvGrA~FEt 154 (501)
T KOG0459|consen 75 YPKEHVNAVFIGHVDAGKSTIGGNILFLTGMVDKRTLEKYEREAKEKNRESWYLSWALDTNGEERDKGKTVEVGRAYFET 154 (501)
T ss_pred CCCCCceEEEEEEEeccccccCCeeEEEEeeecHHHHHHHHHHHHhhccccceEEEEEcCchhhhhccceeeeeeEEEEe
Confidence 457889999999999999999877761 01123333466666666777
Q ss_pred CCEEEEEEecCCchhhHHhHHHHhcCCCEEEEEEeCCC---CCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccc-
Q 030429 55 GNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAAD---RDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEAL- 130 (177)
Q Consensus 55 ~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~---~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~- 130 (177)
...++++.|.||+..|...+..-..++|..++|+++-- ...|+.--+............-...++++||+|-+...
T Consensus 155 e~~~ftiLDApGHk~fv~nmI~GasqAD~~vLvisar~gefetgFerGgQTREha~Lakt~gv~~lVv~vNKMddPtvnW 234 (501)
T KOG0459|consen 155 ENKRFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGVKHLIVLINKMDDPTVNW 234 (501)
T ss_pred cceeEEeeccCcccccchhhccccchhhhhhhhhhhhhchhhcccccccchhHHHHHHHhhccceEEEEEEeccCCccCc
Confidence 88899999999999998877777888999999999822 11222110000001011111235678889999975421
Q ss_pred ---CH----HHHHHHhCccccc-CCceeEEEeeecCCCChHHHHH
Q 030429 131 ---SK----QALVDQLGLESIT-DREVCCYMISCKDSINIDAVID 167 (177)
Q Consensus 131 ---~~----~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~~i~~l~~ 167 (177)
.. +++...+....+. .....++++|..+|.++++..+
T Consensus 235 s~eRy~E~~~k~~~fLr~~g~n~~~d~~f~p~sg~tG~~~k~~~~ 279 (501)
T KOG0459|consen 235 SNERYEECKEKLQPFLRKLGFNPKPDKHFVPVSGLTGANVKDRTD 279 (501)
T ss_pred chhhHHHHHHHHHHHHHHhcccCCCCceeeecccccccchhhccc
Confidence 11 2333333322222 2345789999999999987653
|
|
| >KOG1491 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.72 E-value=8.8e-08 Score=69.65 Aligned_cols=83 Identities=23% Similarity=0.373 Sum_probs=56.6
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCC--ccceeEEEEEeC-----------------CEEEEEEecCCchhh
Q 030429 10 KQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIP--TVGFNMRKVTKG-----------------NVTIKLWDLGGQRRF 70 (177)
Q Consensus 10 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~--t~~~~~~~~~~~-----------------~~~~~~~D~~g~~~~ 70 (177)
.++++++|+|.|+||||||+|.+..........| |++.....+... ...++++|++|--+.
T Consensus 18 ~~~lkiGIVGlPNvGKST~fnalT~~~a~~~NfPF~TIdPn~a~V~v~d~Rfd~l~~~Y~~~~~vpa~l~v~DIAGLvkG 97 (391)
T KOG1491|consen 18 GNNLKIGIVGLPNVGKSTFFNALTKSKAGAANFPFCTIDPNEARVEVPDSRFDLLCPIYGPKSKVPAFLTVYDIAGLVKG 97 (391)
T ss_pred CCcceeeEeeCCCCchHHHHHHHhcCCCCccCCCcceeccccceeecCchHHHHHHHhcCCcceeeeeEEEEeecccccC
Confidence 3678999999999999999999997665544333 444444443321 256889999983221
Q ss_pred -------HHhHHHHhcCCCEEEEEEeCCC
Q 030429 71 -------RTMWERYCRGVSAILYVVDAAD 92 (177)
Q Consensus 71 -------~~~~~~~~~~~d~~i~v~d~~~ 92 (177)
-+..-..++.+|+++.|+++..
T Consensus 98 As~G~GLGN~FLs~iR~vDaifhVVr~f~ 126 (391)
T KOG1491|consen 98 ASAGEGLGNKFLSHIRHVDAIFHVVRAFE 126 (391)
T ss_pred cccCcCchHHHHHhhhhccceeEEEEecC
Confidence 1222334777999999998854
|
|
| >cd01857 HSR1_MMR1 HSR1/MMR1 | Back alignment and domain information |
|---|
Probab=98.72 E-value=8.8e-08 Score=62.62 Aligned_cols=79 Identities=15% Similarity=0.116 Sum_probs=49.9
Q ss_pred HHHhcCCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccCHHHHHHHhCcccccCCceeEEEe
Q 030429 75 ERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMI 154 (177)
Q Consensus 75 ~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (177)
...+..+|++++|+|+.++.+... ..+...+.... .++|+++|+||+|+.+.+...++.+.+... ...++++
T Consensus 6 ~~~i~~aD~vl~ViD~~~p~~~~~--~~l~~~l~~~~-~~k~~iivlNK~DL~~~~~~~~~~~~~~~~-----~~~ii~i 77 (141)
T cd01857 6 WRVVERSDIVVQIVDARNPLLFRP--PDLERYVKEVD-PRKKNILLLNKADLLTEEQRKAWAEYFKKE-----GIVVVFF 77 (141)
T ss_pred HHHHhhCCEEEEEEEccCCcccCC--HHHHHHHHhcc-CCCcEEEEEechhcCCHHHHHHHHHHHHhc-----CCeEEEE
Confidence 456788999999999988754331 12222222211 468999999999997644333333333221 2368899
Q ss_pred eecCCCC
Q 030429 155 SCKDSIN 161 (177)
Q Consensus 155 Sa~~~~~ 161 (177)
||+++.+
T Consensus 78 Sa~~~~~ 84 (141)
T cd01857 78 SALKENA 84 (141)
T ss_pred EecCCCc
Confidence 9988764
|
Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus. |
| >KOG0465 consensus Mitochondrial elongation factor [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.71 E-value=1.1e-08 Score=79.21 Aligned_cols=113 Identities=19% Similarity=0.171 Sum_probs=76.3
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhcC--------CC------------CCCCCCccceeEEEEEeCCEEEEEEecCCchhh
Q 030429 11 QEMELSLIGLQNAGKTSLVNTIATG--------GY------------SEDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRF 70 (177)
Q Consensus 11 ~~~~i~i~G~~~~GKSsli~~l~~~--------~~------------~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~ 70 (177)
+.-+|.+.-.-.+||||+.++.+-- .+ .+...-|+..--..+.+.+++++++||||+-+|
T Consensus 38 k~RNIgi~AhidsgKTT~tEr~Lyy~G~~~~i~ev~~~~a~md~m~~er~rgITiqSAAt~~~w~~~~iNiIDTPGHvDF 117 (721)
T KOG0465|consen 38 KIRNIGISAHIDAGKTTLTERMLYYTGRIKHIGEVRGGGATMDSMELERQRGITIQSAATYFTWRDYRINIIDTPGHVDF 117 (721)
T ss_pred hhcccceEEEEecCCceeeheeeeecceeeeccccccCceeeehHHHHHhcCceeeeceeeeeeccceeEEecCCCceeE
Confidence 4567888889999999999998710 00 011111222222224456899999999999999
Q ss_pred HHhHHHHhcCCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccc
Q 030429 71 RTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSE 128 (177)
Q Consensus 71 ~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~ 128 (177)
.......++-.|.+++|+|+...-.- .....|..+.. .++|.+.++||.|...
T Consensus 118 T~EVeRALrVlDGaVlvl~aV~GVqs-Qt~tV~rQ~~r----y~vP~i~FiNKmDRmG 170 (721)
T KOG0465|consen 118 TFEVERALRVLDGAVLVLDAVAGVES-QTETVWRQMKR----YNVPRICFINKMDRMG 170 (721)
T ss_pred EEEehhhhhhccCeEEEEEcccceeh-hhHHHHHHHHh----cCCCeEEEEehhhhcC
Confidence 88888889999999999998543211 11223333333 4899999999999643
|
|
| >PRK14974 cell division protein FtsY; Provisional | Back alignment and domain information |
|---|
Probab=98.70 E-value=7.5e-08 Score=71.37 Aligned_cols=140 Identities=17% Similarity=0.231 Sum_probs=75.2
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhc----CCCC-----CCCC------------CccceeEEEE-----------------
Q 030429 11 QEMELSLIGLQNAGKTSLVNTIAT----GGYS-----EDMI------------PTVGFNMRKV----------------- 52 (177)
Q Consensus 11 ~~~~i~i~G~~~~GKSsli~~l~~----~~~~-----~~~~------------~t~~~~~~~~----------------- 52 (177)
++..|+++|++|+||||++..+.. .... .+.. ...+......
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~~l~~~g~~V~li~~Dt~R~~a~eqL~~~a~~lgv~v~~~~~g~dp~~v~~~ai~~~ 218 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAYYLKKNGFSVVIAAGDTFRAGAIEQLEEHAERLGVKVIKHKYGADPAAVAYDAIEHA 218 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcCcHHHHHHHHHHHHHcCCceecccCCCCHHHHHHHHHHHH
Confidence 467899999999999998777762 1110 0000 0111111110
Q ss_pred EeCCEEEEEEecCCchhhH----HhHHHH--hcCCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCc
Q 030429 53 TKGNVTIKLWDLGGQRRFR----TMWERY--CRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDK 126 (177)
Q Consensus 53 ~~~~~~~~~~D~~g~~~~~----~~~~~~--~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~ 126 (177)
...++++.++||+|..... ..+... ....|.+++|+|++.... .......+... -..--+++||.|.
T Consensus 219 ~~~~~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~g~d---~~~~a~~f~~~----~~~~giIlTKlD~ 291 (336)
T PRK14974 219 KARGIDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALAGND---AVEQAREFNEA----VGIDGVILTKVDA 291 (336)
T ss_pred HhCCCCEEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEeeccccchh---HHHHHHHHHhc----CCCCEEEEeeecC
Confidence 1134678999999954322 222222 235788999999965422 22222222111 1224577999998
Q ss_pred ccccC-HHHHHHHhCcccccCCceeEEEeeecCCCChHHHHH
Q 030429 127 SEALS-KQALVDQLGLESITDREVCCYMISCKDSINIDAVID 167 (177)
Q Consensus 127 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~ 167 (177)
....- .-.+....+ .|+.+++ +|.+++++..
T Consensus 292 ~~~~G~~ls~~~~~~--------~Pi~~i~--~Gq~v~Dl~~ 323 (336)
T PRK14974 292 DAKGGAALSIAYVIG--------KPILFLG--VGQGYDDLIP 323 (336)
T ss_pred CCCccHHHHHHHHHC--------cCEEEEe--CCCChhhccc
Confidence 65322 222333322 2677776 6888877653
|
|
| >cd01849 YlqF_related_GTPase YlqF-related GTPases | Back alignment and domain information |
|---|
Probab=98.69 E-value=6.1e-08 Score=64.40 Aligned_cols=54 Identities=28% Similarity=0.329 Sum_probs=37.4
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcCCC-C--CCCCCccceeEEEEEeCCEEEEEEecCC
Q 030429 10 KQEMELSLIGLQNAGKTSLVNTIATGGY-S--EDMIPTVGFNMRKVTKGNVTIKLWDLGG 66 (177)
Q Consensus 10 ~~~~~i~i~G~~~~GKSsli~~l~~~~~-~--~~~~~t~~~~~~~~~~~~~~~~~~D~~g 66 (177)
....+++++|.+|+|||||+|++.+... . .....|........ + ..+.++||||
T Consensus 98 ~~~~~~~~~G~~~~GKstlin~l~~~~~~~~~~~~~~t~~~~~~~~--~-~~~~liDtPG 154 (155)
T cd01849 98 KKSITVGVIGYPNVGKSSVINALLNKLKLKVGNVPGTTTSQQEVKL--D-NKIKLLDTPG 154 (155)
T ss_pred ccCcEEEEEccCCCCHHHHHHHHHccccccccCCCCcccceEEEEe--c-CCEEEEECCC
Confidence 4568899999999999999999996542 1 22233433333322 2 3578899998
|
These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases. |
| >PRK10416 signal recognition particle-docking protein FtsY; Provisional | Back alignment and domain information |
|---|
Probab=98.68 E-value=1.2e-07 Score=70.05 Aligned_cols=140 Identities=18% Similarity=0.206 Sum_probs=76.2
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcCCC---------CCCCC------------CccceeEEEE----------------
Q 030429 10 KQEMELSLIGLQNAGKTSLVNTIATGGY---------SEDMI------------PTVGFNMRKV---------------- 52 (177)
Q Consensus 10 ~~~~~i~i~G~~~~GKSsli~~l~~~~~---------~~~~~------------~t~~~~~~~~---------------- 52 (177)
+..-.++++|++|+||||++..+...-. ..+.. ...+......
T Consensus 112 ~~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~~r~~a~eql~~~a~~~~i~~~~~~~~~dpa~~v~~~l~~ 191 (318)
T PRK10416 112 KKPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTFRAAAIEQLQVWGERVGVPVIAQKEGADPASVAFDAIQA 191 (318)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecCccchhhHHHHHHHHHHcCceEEEeCCCCCHHHHHHHHHHH
Confidence 3567899999999999999999873100 00000 0111111110
Q ss_pred -EeCCEEEEEEecCCchhhHH----hHHHH---h-----cCCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEE
Q 030429 53 -TKGNVTIKLWDLGGQRRFRT----MWERY---C-----RGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLV 119 (177)
Q Consensus 53 -~~~~~~~~~~D~~g~~~~~~----~~~~~---~-----~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii 119 (177)
...++++.++||||...... .+... + ...+..++|+|++.. ...+.+ ....... -.+.-+
T Consensus 192 ~~~~~~D~ViIDTaGr~~~~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g--~~~~~~-a~~f~~~----~~~~gi 264 (318)
T PRK10416 192 AKARGIDVLIIDTAGRLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDATTG--QNALSQ-AKAFHEA----VGLTGI 264 (318)
T ss_pred HHhCCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCC--hHHHHH-HHHHHhh----CCCCEE
Confidence 12457899999999543221 11111 1 246788999999753 222222 2222111 134467
Q ss_pred EeeCCCccccc-CHHHHHHHhCcccccCCceeEEEeeecCCCChHHHH
Q 030429 120 LGNKIDKSEAL-SKQALVDQLGLESITDREVCCYMISCKDSINIDAVI 166 (177)
Q Consensus 120 v~nK~D~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~ 166 (177)
|+||.|..... ..-.+....+ .|+.+++ +|++++++-
T Consensus 265 IlTKlD~t~~~G~~l~~~~~~~--------~Pi~~v~--~Gq~~~Dl~ 302 (318)
T PRK10416 265 ILTKLDGTAKGGVVFAIADELG--------IPIKFIG--VGEGIDDLQ 302 (318)
T ss_pred EEECCCCCCCccHHHHHHHHHC--------CCEEEEe--CCCChhhCc
Confidence 89999954332 1233333333 2677777 667777664
|
|
| >COG1161 Predicted GTPases [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.68 E-value=4.5e-08 Score=72.42 Aligned_cols=54 Identities=24% Similarity=0.374 Sum_probs=37.1
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhcCCCC---CCCCCccceeEEEEEeCCEEEEEEecCCc
Q 030429 11 QEMELSLIGLQNAGKTSLVNTIATGGYS---EDMIPTVGFNMRKVTKGNVTIKLWDLGGQ 67 (177)
Q Consensus 11 ~~~~i~i~G~~~~GKSsli~~l~~~~~~---~~~~~t~~~~~~~~~~~~~~~~~~D~~g~ 67 (177)
...+++++|-|++|||||||+|.+.... ...+.|.+.+....+. .+.++||||.
T Consensus 131 ~~~~v~vvG~PNVGKSslIN~L~~k~~~~~s~~PG~Tk~~q~i~~~~---~i~LlDtPGi 187 (322)
T COG1161 131 RKIRVGVVGYPNVGKSTLINRLLGKKVAKTSNRPGTTKGIQWIKLDD---GIYLLDTPGI 187 (322)
T ss_pred cceEEEEEcCCCCcHHHHHHHHhcccceeeCCCCceecceEEEEcCC---CeEEecCCCc
Confidence 4588999999999999999999976542 1122233333333322 3788999994
|
|
| >TIGR00064 ftsY signal recognition particle-docking protein FtsY | Back alignment and domain information |
|---|
Probab=98.67 E-value=1.5e-07 Score=68.12 Aligned_cols=141 Identities=16% Similarity=0.190 Sum_probs=76.5
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcC------CC---CCCCC------------CccceeEEEE----------------
Q 030429 10 KQEMELSLIGLQNAGKTSLVNTIATG------GY---SEDMI------------PTVGFNMRKV---------------- 52 (177)
Q Consensus 10 ~~~~~i~i~G~~~~GKSsli~~l~~~------~~---~~~~~------------~t~~~~~~~~---------------- 52 (177)
...-.|+++|++|+||||.+..+... .. ..+.. ...+......
T Consensus 70 ~~~~vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li~~D~~r~~a~~ql~~~~~~~~i~~~~~~~~~dp~~~~~~~l~~ 149 (272)
T TIGR00064 70 NKPNVILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAAGDTFRAAAIEQLEEWAKRLGVDVIKQKEGADPAAVAFDAIQK 149 (272)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeCCCCCHHHHHHHHHHHHhCCeEEEeCCCCCCHHHHHHHHHHH
Confidence 34567889999999999998888621 00 00000 0111111110
Q ss_pred -EeCCEEEEEEecCCchhhHHhH----HH---Hh-----cCCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEE
Q 030429 53 -TKGNVTIKLWDLGGQRRFRTMW----ER---YC-----RGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLV 119 (177)
Q Consensus 53 -~~~~~~~~~~D~~g~~~~~~~~----~~---~~-----~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii 119 (177)
...++++.++||||........ .. .. ..+|.+++|+|++.. .+... ....+.... .+.-+
T Consensus 150 ~~~~~~D~ViIDT~G~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~~--~~~~~-~~~~f~~~~----~~~g~ 222 (272)
T TIGR00064 150 AKARNIDVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTG--QNALE-QAKVFNEAV----GLTGI 222 (272)
T ss_pred HHHCCCCEEEEeCCCCCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCC--HHHHH-HHHHHHhhC----CCCEE
Confidence 1245789999999955432221 11 11 237999999999643 33322 223332221 23467
Q ss_pred EeeCCCcccccC-HHHHHHHhCcccccCCceeEEEeeecCCCChHHHHH
Q 030429 120 LGNKIDKSEALS-KQALVDQLGLESITDREVCCYMISCKDSINIDAVID 167 (177)
Q Consensus 120 v~nK~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~ 167 (177)
|+||.|...... .-.+....+ .|+.+++ +|++++++..
T Consensus 223 IlTKlDe~~~~G~~l~~~~~~~--------~Pi~~~~--~Gq~~~dl~~ 261 (272)
T TIGR00064 223 ILTKLDGTAKGGIILSIAYELK--------LPIKFIG--VGEKIDDLAP 261 (272)
T ss_pred EEEccCCCCCccHHHHHHHHHC--------cCEEEEe--CCCChHhCcc
Confidence 799999755422 233333333 2666666 6666776643
|
There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein. |
| >PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis | Back alignment and domain information |
|---|
Probab=98.65 E-value=2.5e-08 Score=65.99 Aligned_cols=23 Identities=30% Similarity=0.491 Sum_probs=21.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcC
Q 030429 13 MELSLIGLQNAGKTSLVNTIATG 35 (177)
Q Consensus 13 ~~i~i~G~~~~GKSsli~~l~~~ 35 (177)
-.++++|++|||||||+|.|.+.
T Consensus 36 k~~vl~G~SGvGKSSLiN~L~~~ 58 (161)
T PF03193_consen 36 KTSVLLGQSGVGKSSLINALLPE 58 (161)
T ss_dssp SEEEEECSTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 57899999999999999999965
|
RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B. |
| >PRK12288 GTPase RsgA; Reviewed | Back alignment and domain information |
|---|
Probab=98.59 E-value=1.2e-07 Score=70.77 Aligned_cols=54 Identities=24% Similarity=0.330 Sum_probs=34.0
Q ss_pred EEEEcCCCCCHHHHHHHHhcCCCCC----------CCCCccceeEEEEEeCCEEEEEEecCCchhhH
Q 030429 15 LSLIGLQNAGKTSLVNTIATGGYSE----------DMIPTVGFNMRKVTKGNVTIKLWDLGGQRRFR 71 (177)
Q Consensus 15 i~i~G~~~~GKSsli~~l~~~~~~~----------~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~ 71 (177)
++|+|.+|||||||+|+|++..... ....|.......+..++ .++||||...+.
T Consensus 208 ~~~vG~sgVGKSTLiN~Ll~~~~~~t~~is~~~~rGrHTT~~~~l~~l~~~~---~liDTPGir~~~ 271 (347)
T PRK12288 208 SIFVGQSGVGKSSLINALLPEAEILVGDVSDNSGLGQHTTTAARLYHFPHGG---DLIDSPGVREFG 271 (347)
T ss_pred EEEECCCCCCHHHHHHHhccccceeeccccCcCCCCcCceeeEEEEEecCCC---EEEECCCCCccc
Confidence 7899999999999999998643211 11123333333332232 478999965543
|
|
| >PRK13796 GTPase YqeH; Provisional | Back alignment and domain information |
|---|
Probab=98.57 E-value=3.3e-07 Score=69.08 Aligned_cols=99 Identities=23% Similarity=0.270 Sum_probs=58.2
Q ss_pred hhhHHhHHHHhcCCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccC-HHHHHHHhCcc--cc
Q 030429 68 RRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALS-KQALVDQLGLE--SI 144 (177)
Q Consensus 68 ~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~-~~~~~~~~~~~--~~ 144 (177)
+.|...........+++++|+|+.|... .....+..+. .+.|+++|+||+|+.+... .++..+.+... ..
T Consensus 57 ~~~~~~l~~i~~~~~lIv~VVD~~D~~~--s~~~~L~~~~-----~~kpviLViNK~DLl~~~~~~~~i~~~l~~~~k~~ 129 (365)
T PRK13796 57 DDFLKLLNGIGDSDALVVNVVDIFDFNG--SWIPGLHRFV-----GNNPVLLVGNKADLLPKSVKKNKVKNWLRQEAKEL 129 (365)
T ss_pred HHHHHHHHhhcccCcEEEEEEECccCCC--chhHHHHHHh-----CCCCEEEEEEchhhCCCccCHHHHHHHHHHHHHhc
Confidence 4555544443333449999999977431 1122222221 2578999999999975322 22222111100 00
Q ss_pred cCCceeEEEeeecCCCChHHHHHHHHHHh
Q 030429 145 TDREVCCYMISCKDSINIDAVIDWLIKHS 173 (177)
Q Consensus 145 ~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~ 173 (177)
......++.+||+++.|++++++.+.+..
T Consensus 130 g~~~~~v~~vSAk~g~gI~eL~~~I~~~~ 158 (365)
T PRK13796 130 GLRPVDVVLISAQKGHGIDELLEAIEKYR 158 (365)
T ss_pred CCCcCcEEEEECCCCCCHHHHHHHHHHhc
Confidence 11122588999999999999999997754
|
|
| >cd03112 CobW_like The function of this protein family is unkown | Back alignment and domain information |
|---|
Probab=98.56 E-value=6.3e-07 Score=59.73 Aligned_cols=21 Identities=48% Similarity=0.612 Sum_probs=18.8
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q 030429 15 LSLIGLQNAGKTSLVNTIATG 35 (177)
Q Consensus 15 i~i~G~~~~GKSsli~~l~~~ 35 (177)
++++|..|+|||||++++...
T Consensus 3 ~~l~G~~GsGKTtl~~~l~~~ 23 (158)
T cd03112 3 TVLTGFLGAGKTTLLNHILTE 23 (158)
T ss_pred EEEEECCCCCHHHHHHHHHhc
Confidence 579999999999999999854
|
The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K. |
| >KOG0464 consensus Elongation factor G [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.54 E-value=2.6e-08 Score=74.39 Aligned_cols=128 Identities=23% Similarity=0.216 Sum_probs=88.5
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHhc--------CCCC------------CCCCCccceeEEEEEeCCEEEEEEecCCch
Q 030429 9 FKQEMELSLIGLQNAGKTSLVNTIAT--------GGYS------------EDMIPTVGFNMRKVTKGNVTIKLWDLGGQR 68 (177)
Q Consensus 9 ~~~~~~i~i~G~~~~GKSsli~~l~~--------~~~~------------~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~ 68 (177)
+.+--+|+++..-.+||||...|++- +.+. +..+-|+..--..+++++.+++++||||+-
T Consensus 34 ~akirnigiiahidagktttterily~ag~~~s~g~vddgdtvtdfla~erergitiqsaav~fdwkg~rinlidtpghv 113 (753)
T KOG0464|consen 34 IAKIRNIGIIAHIDAGKTTTTERILYLAGAIHSAGDVDDGDTVTDFLAIERERGITIQSAAVNFDWKGHRINLIDTPGHV 113 (753)
T ss_pred hhhhhcceeEEEecCCCchhHHHHHHHhhhhhcccccCCCchHHHHHHHHHhcCceeeeeeeecccccceEeeecCCCcc
Confidence 34456899999999999999999871 1111 111122222333456789999999999999
Q ss_pred hhHHhHHHHhcCCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccc---CHHHHHHHhCc
Q 030429 69 RFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEAL---SKQALVDQLGL 141 (177)
Q Consensus 69 ~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~---~~~~~~~~~~~ 141 (177)
+|+-.....++-.|+++.|+|++..-.-..+.- +.+....++|.+.++||+|+.... ..+.+.+.++.
T Consensus 114 df~leverclrvldgavav~dasagve~qtltv-----wrqadk~~ip~~~finkmdk~~anfe~avdsi~ekl~a 184 (753)
T KOG0464|consen 114 DFRLEVERCLRVLDGAVAVFDASAGVEAQTLTV-----WRQADKFKIPAHCFINKMDKLAANFENAVDSIEEKLGA 184 (753)
T ss_pred eEEEEHHHHHHHhcCeEEEEeccCCcccceeee-----ehhccccCCchhhhhhhhhhhhhhhhhHHHHHHHHhCC
Confidence 998888888888999999999987543333322 244444578999999999986532 23455555553
|
|
| >TIGR01425 SRP54_euk signal recognition particle protein SRP54 | Back alignment and domain information |
|---|
Probab=98.51 E-value=1.2e-06 Score=66.84 Aligned_cols=111 Identities=17% Similarity=0.195 Sum_probs=62.3
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhc------CC---CCCCC------------CCccceeEEEEE----------------
Q 030429 11 QEMELSLIGLQNAGKTSLVNTIAT------GG---YSEDM------------IPTVGFNMRKVT---------------- 53 (177)
Q Consensus 11 ~~~~i~i~G~~~~GKSsli~~l~~------~~---~~~~~------------~~t~~~~~~~~~---------------- 53 (177)
.+-.|+++|++||||||++..+.. .. ...+. ....+..+....
T Consensus 99 ~~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~R~aA~eQLk~~a~~~~vp~~~~~~~~dp~~i~~~~l~~~ 178 (429)
T TIGR01425 99 KQNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTFRAGAFDQLKQNATKARIPFYGSYTESDPVKIASEGVEKF 178 (429)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcccchhHHHHHHHHhhccCCeEEeecCCCCHHHHHHHHHHHH
Confidence 356799999999999999999862 11 01111 111122222111
Q ss_pred -eCCEEEEEEecCCchhhHH-h---HHHH--hcCCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCc
Q 030429 54 -KGNVTIKLWDLGGQRRFRT-M---WERY--CRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDK 126 (177)
Q Consensus 54 -~~~~~~~~~D~~g~~~~~~-~---~~~~--~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~ 126 (177)
..++++.++||||...... . +..+ ....+.+++|+|++....-.+....+.. . -.+.-+|+||.|.
T Consensus 179 ~~~~~DvViIDTaGr~~~d~~lm~El~~i~~~~~p~e~lLVlda~~Gq~a~~~a~~F~~---~----~~~~g~IlTKlD~ 251 (429)
T TIGR01425 179 KKENFDIIIVDTSGRHKQEDSLFEEMLQVAEAIQPDNIIFVMDGSIGQAAEAQAKAFKD---S----VDVGSVIITKLDG 251 (429)
T ss_pred HhCCCCEEEEECCCCCcchHHHHHHHHHHhhhcCCcEEEEEeccccChhHHHHHHHHHh---c----cCCcEEEEECccC
Confidence 1257899999999543322 1 1221 2346889999998653222222222221 1 2345677999997
Q ss_pred cc
Q 030429 127 SE 128 (177)
Q Consensus 127 ~~ 128 (177)
..
T Consensus 252 ~a 253 (429)
T TIGR01425 252 HA 253 (429)
T ss_pred CC
Confidence 54
|
This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model. |
| >TIGR03348 VI_IcmF type VI secretion protein IcmF | Back alignment and domain information |
|---|
Probab=98.51 E-value=1e-06 Score=75.45 Aligned_cols=112 Identities=20% Similarity=0.176 Sum_probs=65.3
Q ss_pred EEEEcCCCCCHHHHHHHHhcCCCCCCC--CC--ccc---eeEEEEEeCCEEEEEEecCC----ch----hhHHhHHHHh-
Q 030429 15 LSLIGLQNAGKTSLVNTIATGGYSEDM--IP--TVG---FNMRKVTKGNVTIKLWDLGG----QR----RFRTMWERYC- 78 (177)
Q Consensus 15 i~i~G~~~~GKSsli~~l~~~~~~~~~--~~--t~~---~~~~~~~~~~~~~~~~D~~g----~~----~~~~~~~~~~- 78 (177)
.+++|++|+||||++++- +-.++-.. .. +.+ ......-.. -+-.++||+| ++ .....|..++
T Consensus 114 YlviG~~gsGKtt~l~~s-gl~~pl~~~~~~~~~~~~~~t~~c~wwf~-~~avliDtaG~y~~~~~~~~~~~~~W~~fL~ 191 (1169)
T TIGR03348 114 YLVIGPPGSGKTTLLQNS-GLKFPLAERLGAAALRGVGGTRNCDWWFT-DEAVLIDTAGRYTTQDSDPEEDAAAWLGFLG 191 (1169)
T ss_pred EEEECCCCCchhHHHHhC-CCCCcCchhhccccccCCCCCcccceEec-CCEEEEcCCCccccCCCcccccHHHHHHHHH
Confidence 489999999999999987 33332211 00 101 010111111 2445889999 11 2233344432
Q ss_pred --------cCCCEEEEEEeCCCCCC--H-------HHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccc
Q 030429 79 --------RGVSAILYVVDAADRDS--V-------PIARSELHELLMKPSLSGIPLLVLGNKIDKSEA 129 (177)
Q Consensus 79 --------~~~d~~i~v~d~~~~~~--~-------~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~ 129 (177)
+..++||+++|+++--. - ..++..+.++..... ...|+.+++||+|+...
T Consensus 192 ~L~k~R~r~plnGvil~vs~~~Ll~~~~~~~~~~a~~lR~rl~el~~~lg-~~~PVYvv~Tk~Dll~G 258 (1169)
T TIGR03348 192 LLRKHRRRQPLNGVVVTVSLADLLTADPAERKAHARAIRQRLQELREQLG-ARFPVYLVLTKADLLAG 258 (1169)
T ss_pred HHHHhCCCCCCCeEEEEEEHHHHhCCCHHHHHHHHHHHHHHHHHHHHHhC-CCCCEEEEEecchhhcC
Confidence 34799999999965321 1 233445555544433 47999999999999864
|
Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems. |
| >PRK12289 GTPase RsgA; Reviewed | Back alignment and domain information |
|---|
Probab=98.48 E-value=3.2e-07 Score=68.57 Aligned_cols=22 Identities=27% Similarity=0.416 Sum_probs=19.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 030429 14 ELSLIGLQNAGKTSLVNTIATG 35 (177)
Q Consensus 14 ~i~i~G~~~~GKSsli~~l~~~ 35 (177)
.++|+|++|+|||||+|+|.+.
T Consensus 174 i~v~iG~SgVGKSSLIN~L~~~ 195 (352)
T PRK12289 174 ITVVAGPSGVGKSSLINRLIPD 195 (352)
T ss_pred eEEEEeCCCCCHHHHHHHHcCc
Confidence 3799999999999999999854
|
|
| >KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=98.45 E-value=1.2e-06 Score=62.38 Aligned_cols=122 Identities=15% Similarity=0.210 Sum_probs=72.1
Q ss_pred cccccceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCC----ccceeEEE--EEeCC--EEEEEEecCC-----------
Q 030429 6 SLFFKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIP----TVGFNMRK--VTKGN--VTIKLWDLGG----------- 66 (177)
Q Consensus 6 ~~~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~----t~~~~~~~--~~~~~--~~~~~~D~~g----------- 66 (177)
+...--.++|+.+|.+|.|||||++.|.+..+.....+ +......+ +.-.+ ..+.++||.|
T Consensus 36 sv~~GF~FNilCvGETg~GKsTLmdtLFNt~f~~~p~~H~~~~V~L~~~TyelqEsnvrlKLtiv~tvGfGDQinK~~Sy 115 (406)
T KOG3859|consen 36 SVSQGFCFNILCVGETGLGKSTLMDTLFNTKFESEPSTHTLPNVKLQANTYELQESNVRLKLTIVDTVGFGDQINKEDSY 115 (406)
T ss_pred HHhcCceEEEEEeccCCccHHHHHHHHhccccCCCCCccCCCCceeecchhhhhhcCeeEEEEEEeecccccccCccccc
Confidence 33444568999999999999999999998887666544 33322222 22334 4677899998
Q ss_pred -------chhhHHhHHH---------HhcC--CCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccc
Q 030429 67 -------QRRFRTMWER---------YCRG--VSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSE 128 (177)
Q Consensus 67 -------~~~~~~~~~~---------~~~~--~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~ 128 (177)
+.+|..-... .+++ .++++|.+..+.- ++..+.-....-+. .+..+|-|+.|+|...
T Consensus 116 k~iVdyidaQFEaYLQEELKi~Rsl~~~hDsRiH~CLYFI~PTGH-~LKslDLvtmk~Ld----skVNIIPvIAKaDtis 190 (406)
T KOG3859|consen 116 KPIVDYIDAQFEAYLQEELKIRRSLFTYHDSRIHVCLYFISPTGH-SLKSLDLVTMKKLD----SKVNIIPVIAKADTIS 190 (406)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHhccCceEEEEEEecCCCc-chhHHHHHHHHHHh----hhhhhHHHHHHhhhhh
Confidence 1122211111 1233 4678888776432 23332222222112 3567788889999876
Q ss_pred ccCH
Q 030429 129 ALSK 132 (177)
Q Consensus 129 ~~~~ 132 (177)
..+.
T Consensus 191 K~eL 194 (406)
T KOG3859|consen 191 KEEL 194 (406)
T ss_pred HHHH
Confidence 5443
|
|
| >TIGR00157 ribosome small subunit-dependent GTPase A | Back alignment and domain information |
|---|
Probab=98.45 E-value=6e-07 Score=64.07 Aligned_cols=54 Identities=19% Similarity=0.175 Sum_probs=35.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCC----------CCCCccceeEEEEEeCCEEEEEEecCCchhh
Q 030429 13 MELSLIGLQNAGKTSLVNTIATGGYSE----------DMIPTVGFNMRKVTKGNVTIKLWDLGGQRRF 70 (177)
Q Consensus 13 ~~i~i~G~~~~GKSsli~~l~~~~~~~----------~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~ 70 (177)
-.++++|++|+|||||+|++.+..... ....|........ .+ ..++||||-..+
T Consensus 121 ~~~~~~G~sgvGKStLiN~L~~~~~~~t~~i~~~~~~G~hTT~~~~l~~l--~~--~~liDtPG~~~~ 184 (245)
T TIGR00157 121 RISVFAGQSGVGKSSLINALDPSVKQQVNDISSKLGLGKHTTTHVELFHF--HG--GLIADTPGFNEF 184 (245)
T ss_pred CEEEEECCCCCCHHHHHHHHhhhhhccccceeccCCCCCCcCCceEEEEc--CC--cEEEeCCCcccc
Confidence 367999999999999999998643211 1123444444444 22 267899995443
|
The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option). |
| >KOG1534 consensus Putative transcription factor FET5 [Transcription] | Back alignment and domain information |
|---|
Probab=98.45 E-value=2.3e-06 Score=58.57 Aligned_cols=112 Identities=17% Similarity=0.199 Sum_probs=61.2
Q ss_pred EEEEEecCCchhhHH------hHHHHhcC---CCEEEEEEeCCCC-CC---HHHHHHHHHHHHcCCCCCCCcEEEEeeCC
Q 030429 58 TIKLWDLGGQRRFRT------MWERYCRG---VSAILYVVDAADR-DS---VPIARSELHELLMKPSLSGIPLLVLGNKI 124 (177)
Q Consensus 58 ~~~~~D~~g~~~~~~------~~~~~~~~---~d~~i~v~d~~~~-~~---~~~~~~~~~~~~~~~~~~~~~~iiv~nK~ 124 (177)
.+.++|+|||-.... ....++++ --++++++|..-- ++ +..+..-+..+... ..|.|=|++|.
T Consensus 99 dylifDcPGQIELytH~pVm~~iv~hl~~~~F~~c~Vylldsqf~vD~~KfiSG~lsAlsAMi~l----E~P~INvlsKM 174 (273)
T KOG1534|consen 99 DYLIFDCPGQIELYTHLPVMPQIVEHLKQWNFNVCVVYLLDSQFLVDSTKFISGCLSALSAMISL----EVPHINVLSKM 174 (273)
T ss_pred CEEEEeCCCeeEEeecChhHHHHHHHHhcccCceeEEEEeccchhhhHHHHHHHHHHHHHHHHHh----cCcchhhhhHH
Confidence 577889999754322 12223333 2356667765210 11 22223333333333 68999999999
Q ss_pred CcccccCHHHHHHHhCccccc---------------------------CCceeEEEeeecCCCChHHHHHHHHHHh
Q 030429 125 DKSEALSKQALVDQLGLESIT---------------------------DREVCCYMISCKDSINIDAVIDWLIKHS 173 (177)
Q Consensus 125 D~~~~~~~~~~~~~~~~~~~~---------------------------~~~~~~~~~Sa~~~~~i~~l~~~l~~~~ 173 (177)
|+.....++++.+.+.-.... ..-+.|++....+.+.++.++..|-..+
T Consensus 175 DLlk~~~k~~l~~Fl~~d~~~l~~~~~~~~~s~Kf~~L~~~i~~~v~d~~Mv~FlPl~~~~eeSi~~iL~~ID~ai 250 (273)
T KOG1534|consen 175 DLLKDKNKKELERFLNPDEYLLLEDSEINLRSPKFKKLTKCIAQLVDDYSMVNFLPLDSSDEESINIILSYIDDAI 250 (273)
T ss_pred HHhhhhhHHHHHHhcCCchhhhhcccccccccHHHHHHHHHHHHHhccccceeeeecCCCCHHHHHHHHHHHHHHH
Confidence 998775555544444311110 0124566666667777777777766544
|
|
| >PRK01889 GTPase RsgA; Reviewed | Back alignment and domain information |
|---|
Probab=98.44 E-value=2.4e-06 Score=64.21 Aligned_cols=84 Identities=17% Similarity=0.180 Sum_probs=55.7
Q ss_pred hcCCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccCHHHHHHHhCcccccCCceeEEEeeec
Q 030429 78 CRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCK 157 (177)
Q Consensus 78 ~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 157 (177)
..+.|.+++|+++..+-....+...+..... .+++.++|+||+|+.+.. ++..+.+... ..+.+++.+|++
T Consensus 110 aANvD~vliV~s~~p~~~~~~ldr~L~~a~~----~~i~piIVLNK~DL~~~~--~~~~~~~~~~---~~g~~Vi~vSa~ 180 (356)
T PRK01889 110 AANVDTVFIVCSLNHDFNLRRIERYLALAWE----SGAEPVIVLTKADLCEDA--EEKIAEVEAL---APGVPVLAVSAL 180 (356)
T ss_pred EEeCCEEEEEEecCCCCChhHHHHHHHHHHH----cCCCEEEEEEChhcCCCH--HHHHHHHHHh---CCCCcEEEEECC
Confidence 5678999999999643333344444444333 366778899999997642 2222222211 234578999999
Q ss_pred CCCChHHHHHHHH
Q 030429 158 DSINIDAVIDWLI 170 (177)
Q Consensus 158 ~~~~i~~l~~~l~ 170 (177)
++.|+++|.++|.
T Consensus 181 ~g~gl~~L~~~L~ 193 (356)
T PRK01889 181 DGEGLDVLAAWLS 193 (356)
T ss_pred CCccHHHHHHHhh
Confidence 9999999998874
|
|
| >COG1162 Predicted GTPases [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.43 E-value=4.8e-07 Score=65.36 Aligned_cols=54 Identities=20% Similarity=0.274 Sum_probs=34.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC----------CCCCCCCccceeEEEEEeCCEEEEEEecCCchhh
Q 030429 14 ELSLIGLQNAGKTSLVNTIATGG----------YSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRF 70 (177)
Q Consensus 14 ~i~i~G~~~~GKSsli~~l~~~~----------~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~ 70 (177)
..+++|++|+|||||+|+|.... .......|.......+..++ .++||||...+
T Consensus 166 ~svl~GqSGVGKSSLiN~L~p~~~~~t~eIS~~~~rGkHTTt~~~l~~l~~gG---~iiDTPGf~~~ 229 (301)
T COG1162 166 ITVLLGQSGVGKSTLINALLPELNQKTGEISEKLGRGRHTTTHVELFPLPGGG---WIIDTPGFRSL 229 (301)
T ss_pred eEEEECCCCCcHHHHHHhhCchhhhhhhhhcccCCCCCCccceEEEEEcCCCC---EEEeCCCCCcc
Confidence 56899999999999999998532 11223334444444443333 35699995544
|
|
| >cd03114 ArgK-like The function of this protein family is unkown | Back alignment and domain information |
|---|
Probab=98.43 E-value=6.1e-07 Score=59.09 Aligned_cols=58 Identities=14% Similarity=0.178 Sum_probs=34.5
Q ss_pred CEEEEEEecCCchhhHHhHHHHhcCCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCC
Q 030429 56 NVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKID 125 (177)
Q Consensus 56 ~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D 125 (177)
++++.++||+|..... ..++..+|.++++...+--+.+.-.+ ..+. ...-++++||+|
T Consensus 91 ~~D~iiIDtaG~~~~~---~~~~~~Ad~~ivv~tpe~~D~y~~~k---~~~~------~~~~~~~~~k~~ 148 (148)
T cd03114 91 GFDVIIVETVGVGQSE---VDIASMADTTVVVMAPGAGDDIQAIK---AGIM------EIADIVVVNKAD 148 (148)
T ss_pred CCCEEEEECCccChhh---hhHHHhCCEEEEEECCCchhHHHHhh---hhHh------hhcCEEEEeCCC
Confidence 5788999998854322 23677799888888764211121111 1111 233478899997
|
The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems. |
| >PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ] | Back alignment and domain information |
|---|
Probab=98.38 E-value=1.7e-07 Score=64.61 Aligned_cols=110 Identities=16% Similarity=0.187 Sum_probs=58.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcC----C----------CCCC-------CCCccceeEEEE-----------------Ee
Q 030429 13 MELSLIGLQNAGKTSLVNTIATG----G----------YSED-------MIPTVGFNMRKV-----------------TK 54 (177)
Q Consensus 13 ~~i~i~G~~~~GKSsli~~l~~~----~----------~~~~-------~~~t~~~~~~~~-----------------~~ 54 (177)
..|+++|++||||||.+-++... . +... +....++..... ..
T Consensus 2 ~vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~~~~~~~~~~~~~l~~~~~ 81 (196)
T PF00448_consen 2 KVIALVGPTGVGKTTTIAKLAARLKLKGKKVALISADTYRIGAVEQLKTYAEILGVPFYVARTESDPAEIAREALEKFRK 81 (196)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEESTSSTHHHHHHHHHHHHHTEEEEESSTTSCHHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCchHhHHHHHHHHHhhccccceeecCCCCCccHHHHHHHHHHHhccccchhhcchhhHHHHHHHHHHHhh
Confidence 36899999999999999888621 0 0000 001112222211 12
Q ss_pred CCEEEEEEecCCchhhHH----hHHHH--hcCCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccc
Q 030429 55 GNVTIKLWDLGGQRRFRT----MWERY--CRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSE 128 (177)
Q Consensus 55 ~~~~~~~~D~~g~~~~~~----~~~~~--~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~ 128 (177)
+++++.++||+|...... .+..+ ....+-+++|.+++.. .+.+. ......... + +-=+++||.|-..
T Consensus 82 ~~~D~vlIDT~Gr~~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~--~~~~~-~~~~~~~~~---~-~~~lIlTKlDet~ 154 (196)
T PF00448_consen 82 KGYDLVLIDTAGRSPRDEELLEELKKLLEALNPDEVHLVLSATMG--QEDLE-QALAFYEAF---G-IDGLILTKLDETA 154 (196)
T ss_dssp TTSSEEEEEE-SSSSTHHHHHHHHHHHHHHHSSSEEEEEEEGGGG--GHHHH-HHHHHHHHS---S-TCEEEEESTTSSS
T ss_pred cCCCEEEEecCCcchhhHHHHHHHHHHhhhcCCccceEEEecccC--hHHHH-HHHHHhhcc---c-CceEEEEeecCCC
Confidence 347789999999443321 22221 1257889999999664 22322 222222221 1 2235699999755
Q ss_pred c
Q 030429 129 A 129 (177)
Q Consensus 129 ~ 129 (177)
.
T Consensus 155 ~ 155 (196)
T PF00448_consen 155 R 155 (196)
T ss_dssp T
T ss_pred C
Confidence 3
|
SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A .... |
| >PRK13796 GTPase YqeH; Provisional | Back alignment and domain information |
|---|
Probab=98.37 E-value=8e-07 Score=67.03 Aligned_cols=24 Identities=29% Similarity=0.602 Sum_probs=21.4
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcC
Q 030429 12 EMELSLIGLQNAGKTSLVNTIATG 35 (177)
Q Consensus 12 ~~~i~i~G~~~~GKSsli~~l~~~ 35 (177)
..++.++|.+|||||||+|++...
T Consensus 160 ~~~v~vvG~~NvGKSTLiN~L~~~ 183 (365)
T PRK13796 160 GRDVYVVGVTNVGKSTLINRIIKE 183 (365)
T ss_pred CCeEEEEcCCCCcHHHHHHHHHhh
Confidence 458999999999999999999853
|
|
| >KOG1424 consensus Predicted GTP-binding protein MMR1 [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.33 E-value=7.6e-07 Score=68.07 Aligned_cols=53 Identities=23% Similarity=0.288 Sum_probs=40.3
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhcCCC---CCCCCCccceeEEEEEeCCEEEEEEecCC
Q 030429 11 QEMELSLIGLQNAGKTSLVNTIATGGY---SEDMIPTVGFNMRKVTKGNVTIKLWDLGG 66 (177)
Q Consensus 11 ~~~~i~i~G~~~~GKSsli~~l~~~~~---~~~~~~t~~~~~~~~~~~~~~~~~~D~~g 66 (177)
..+.|+++|-|+|||||+||+|.+.+. ....+.|..+++..++ -.+.++||||
T Consensus 313 ~~vtVG~VGYPNVGKSSTINaLvG~KkVsVS~TPGkTKHFQTi~ls---~~v~LCDCPG 368 (562)
T KOG1424|consen 313 DVVTVGFVGYPNVGKSSTINALVGRKKVSVSSTPGKTKHFQTIFLS---PSVCLCDCPG 368 (562)
T ss_pred ceeEEEeecCCCCchhHHHHHHhcCceeeeecCCCCcceeEEEEcC---CCceecCCCC
Confidence 358999999999999999999997763 3334445556666544 3567889999
|
|
| >TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH | Back alignment and domain information |
|---|
Probab=98.33 E-value=9.6e-07 Score=66.49 Aligned_cols=24 Identities=29% Similarity=0.623 Sum_probs=21.7
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcC
Q 030429 12 EMELSLIGLQNAGKTSLVNTIATG 35 (177)
Q Consensus 12 ~~~i~i~G~~~~GKSsli~~l~~~ 35 (177)
..++.++|.+|+|||||+|++.+.
T Consensus 154 ~~~v~~vG~~nvGKStliN~l~~~ 177 (360)
T TIGR03597 154 KKDVYVVGVTNVGKSSLINKLLKQ 177 (360)
T ss_pred CCeEEEECCCCCCHHHHHHHHHhh
Confidence 358999999999999999999864
|
This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli. |
| >cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes | Back alignment and domain information |
|---|
Probab=98.33 E-value=1.6e-06 Score=58.56 Aligned_cols=67 Identities=19% Similarity=0.185 Sum_probs=38.7
Q ss_pred CEEEEEEecCCchhhH----HhHHHH--hcCCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccc
Q 030429 56 NVTIKLWDLGGQRRFR----TMWERY--CRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEA 129 (177)
Q Consensus 56 ~~~~~~~D~~g~~~~~----~~~~~~--~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~ 129 (177)
+..+.++|+||..... ...... ....+.+++|+|+.... ........+.... + ..-+|.||.|....
T Consensus 82 ~~d~viiDt~g~~~~~~~~l~~l~~l~~~~~~~~~~lVv~~~~~~---~~~~~~~~~~~~~---~-~~~viltk~D~~~~ 154 (173)
T cd03115 82 NFDVVIVDTAGRLQIDENLMEELKKIKRVVKPDEVLLVVDAMTGQ---DAVNQAKAFNEAL---G-ITGVILTKLDGDAR 154 (173)
T ss_pred CCCEEEEECcccchhhHHHHHHHHHHHhhcCCCeEEEEEECCCCh---HHHHHHHHHHhhC---C-CCEEEEECCcCCCC
Confidence 4668889999964322 111221 23489999999986432 2223333332221 1 24567799997654
|
SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain. |
| >PF02492 cobW: CobW/HypB/UreG, nucleotide-binding domain; InterPro: IPR003495 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt | Back alignment and domain information |
|---|
Probab=98.33 E-value=6.4e-07 Score=60.89 Aligned_cols=119 Identities=18% Similarity=0.248 Sum_probs=63.3
Q ss_pred EEEEcCCCCCHHHHHHHHhc-C---C--------CCCC-----CCCccceeEEEEEe---------------------C-
Q 030429 15 LSLIGLQNAGKTSLVNTIAT-G---G--------YSED-----MIPTVGFNMRKVTK---------------------G- 55 (177)
Q Consensus 15 i~i~G~~~~GKSsli~~l~~-~---~--------~~~~-----~~~t~~~~~~~~~~---------------------~- 55 (177)
+++.|..|||||||+++++. . . +... .....+.....+.. .
T Consensus 3 ~ii~GfLGsGKTTli~~ll~~~~~~~~~~vI~ne~g~~~iD~~~l~~~~~~v~~l~~gcicc~~~~~~~~~l~~l~~~~~ 82 (178)
T PF02492_consen 3 IIITGFLGSGKTTLINHLLKRNRQGERVAVIVNEFGEVNIDAELLQEDGVPVVELNNGCICCTLRDDLVEALRRLLREYE 82 (178)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHTTTS-EEEEECSTTSTHHHHHHHHTTT-EEEEECTTTESS-TTS-HHHHHHHHCCCCH
T ss_pred EEEEcCCCCCHHHHHHHHHHHhcCCceeEEEEccccccccchhhhcccceEEEEecCCCcccccHHHHHHHHHHHHHhcC
Confidence 68899999999999999993 1 0 0000 00111222333221 2
Q ss_pred -CEEEEEEecCCchhhHHhH--H---HHhcCCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccc
Q 030429 56 -NVTIKLWDLGGQRRFRTMW--E---RYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEA 129 (177)
Q Consensus 56 -~~~~~~~D~~g~~~~~~~~--~---~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~ 129 (177)
..+..++++.|...-.... . ...-..+.++.|+|+.+-.........+...+... =++++||+|+.+.
T Consensus 83 ~~~d~IiIE~sG~a~p~~l~~~~~~~~~~~~~~~iI~vVDa~~~~~~~~~~~~~~~Qi~~A------DvIvlnK~D~~~~ 156 (178)
T PF02492_consen 83 ERPDRIIIETSGLADPAPLILQDPPLKEDFRLDSIITVVDATNFDELENIPELLREQIAFA------DVIVLNKIDLVSD 156 (178)
T ss_dssp GC-SEEEEEEECSSGGGGHHHHSHHHHHHESESEEEEEEEGTTHGGHTTHCHHHHHHHCT-------SEEEEE-GGGHHH
T ss_pred CCcCEEEECCccccccchhhhccccccccccccceeEEeccccccccccchhhhhhcchhc------CEEEEeccccCCh
Confidence 3466777888844433331 0 01223689999999965322333333444443332 2788999999887
Q ss_pred cCH-HHHHHHh
Q 030429 130 LSK-QALVDQL 139 (177)
Q Consensus 130 ~~~-~~~~~~~ 139 (177)
+.. +.+.+.+
T Consensus 157 ~~~i~~~~~~i 167 (178)
T PF02492_consen 157 EQKIERVREMI 167 (178)
T ss_dssp H--HHHHHHHH
T ss_pred hhHHHHHHHHH
Confidence 532 4444433
|
Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents CobW-like proteins, including P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [], and urease accessory protein UreG, which acts as a chaperone in the activation of urease upon insertion of nickel into the active site [].; PDB: 2WSM_B 1NIJ_A 2HF9_A 2HF8_B. |
| >PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=98.32 E-value=4.4e-06 Score=62.79 Aligned_cols=121 Identities=15% Similarity=0.136 Sum_probs=64.1
Q ss_pred cccceeEEEEEcCCCCCHHHHHHHHhcCCCCC---C--------CC------------CccceeEEEEE-----------
Q 030429 8 FFKQEMELSLIGLQNAGKTSLVNTIATGGYSE---D--------MI------------PTVGFNMRKVT----------- 53 (177)
Q Consensus 8 ~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~---~--------~~------------~t~~~~~~~~~----------- 53 (177)
...+.-.++++|++|+||||++..+....... . .. ...+.......
T Consensus 133 ~~~~g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l~~ 212 (374)
T PRK14722 133 LMERGGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLALAE 212 (374)
T ss_pred cccCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHHHHH
Confidence 44556789999999999999999997421100 0 00 00112222211
Q ss_pred eCCEEEEEEecCCchhhHHhHH---HHh---cCCCEEEEEEeCCCC-CCHHHHHHHHHHHHcCCCCC-CCcEEEEeeCCC
Q 030429 54 KGNVTIKLWDLGGQRRFRTMWE---RYC---RGVSAILYVVDAADR-DSVPIARSELHELLMKPSLS-GIPLLVLGNKID 125 (177)
Q Consensus 54 ~~~~~~~~~D~~g~~~~~~~~~---~~~---~~~d~~i~v~d~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~iiv~nK~D 125 (177)
..+..+.++||+|......... ..+ ....-.++|++++.. +...+....+.......... ..+-=+|+||.|
T Consensus 213 l~~~DlVLIDTaG~~~~d~~l~e~La~L~~~~~~~~~lLVLsAts~~~~l~evi~~f~~~~~~p~~~~~~~~~~I~TKlD 292 (374)
T PRK14722 213 LRNKHMVLIDTIGMSQRDRTVSDQIAMLHGADTPVQRLLLLNATSHGDTLNEVVQAYRSAAGQPKAALPDLAGCILTKLD 292 (374)
T ss_pred hcCCCEEEEcCCCCCcccHHHHHHHHHHhccCCCCeEEEEecCccChHHHHHHHHHHHHhhcccccccCCCCEEEEeccc
Confidence 2356889999999553322221 122 224566889998764 33333333343332111000 012346689999
Q ss_pred ccc
Q 030429 126 KSE 128 (177)
Q Consensus 126 ~~~ 128 (177)
-..
T Consensus 293 Et~ 295 (374)
T PRK14722 293 EAS 295 (374)
T ss_pred cCC
Confidence 754
|
|
| >PRK10867 signal recognition particle protein; Provisional | Back alignment and domain information |
|---|
Probab=98.31 E-value=2.6e-06 Score=65.33 Aligned_cols=24 Identities=38% Similarity=0.580 Sum_probs=19.6
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHh
Q 030429 10 KQEMELSLIGLQNAGKTSLVNTIA 33 (177)
Q Consensus 10 ~~~~~i~i~G~~~~GKSsli~~l~ 33 (177)
..+..|+++|++||||||++-.+.
T Consensus 98 ~~p~vI~~vG~~GsGKTTtaakLA 121 (433)
T PRK10867 98 KPPTVIMMVGLQGAGKTTTAGKLA 121 (433)
T ss_pred CCCEEEEEECCCCCcHHHHHHHHH
Confidence 346789999999999999766665
|
|
| >COG0523 Putative GTPases (G3E family) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.31 E-value=2.9e-05 Score=57.48 Aligned_cols=133 Identities=17% Similarity=0.143 Sum_probs=74.0
Q ss_pred EEEEcCCCCCHHHHHHHHhcCCC----------------C-CCCCCccceeEEEEEe----------------------C
Q 030429 15 LSLIGLQNAGKTSLVNTIATGGY----------------S-EDMIPTVGFNMRKVTK----------------------G 55 (177)
Q Consensus 15 i~i~G~~~~GKSsli~~l~~~~~----------------~-~~~~~t~~~~~~~~~~----------------------~ 55 (177)
.++.|.=|||||||+++++...- . .......+....++.. +
T Consensus 4 tvitGFLGsGKTTlL~~lL~~~~g~kiAVIVNEfGEvgID~~~~l~~~~e~~~El~nGCICCT~r~dl~~~~~~L~~~~~ 83 (323)
T COG0523 4 TVITGFLGSGKTTLLNHLLANRDGKKIAVIVNEFGEVGIDGGALLSDTGEEVVELTNGCICCTVRDDLLPALERLLRRRD 83 (323)
T ss_pred EEEeecCCCCHHHHHHHHHhccCCCcEEEEEecCccccccCCCccccCCccEEEeCCceEEEeccchhHHHHHHHHhccC
Confidence 47889999999999999984321 1 1112222222333221 2
Q ss_pred CEEEEEEecCCchhhHHhHHHHhc--------CCCEEEEEEeCCCCCCHHH-HHHHHHHHHcCCCCCCCcEEEEeeCCCc
Q 030429 56 NVTIKLWDLGGQRRFRTMWERYCR--------GVSAILYVVDAADRDSVPI-ARSELHELLMKPSLSGIPLLVLGNKIDK 126 (177)
Q Consensus 56 ~~~~~~~D~~g~~~~~~~~~~~~~--------~~d~~i~v~d~~~~~~~~~-~~~~~~~~~~~~~~~~~~~iiv~nK~D~ 126 (177)
.....++++.|-..-......+.. ..|.++-|+|+..-..... .......-+.. -=++++||.|+
T Consensus 84 ~~D~ivIEtTGlA~P~pv~~t~~~~~~l~~~~~ld~vvtvVDa~~~~~~~~~~~~~~~~Qia~------AD~ivlNK~Dl 157 (323)
T COG0523 84 RPDRLVIETTGLADPAPVIQTFLTDPELADGVRLDGVVTVVDAAHFLEGLDAIAELAEDQLAF------ADVIVLNKTDL 157 (323)
T ss_pred CCCEEEEeCCCCCCCHHHHHHhccccccccceeeceEEEEEeHHHhhhhHHHHHHHHHHHHHh------CcEEEEecccC
Confidence 245667788885544333333322 2478999999866322221 22222222222 23788999999
Q ss_pred ccccCHHHHHHHhCcccccCCceeEEEeee
Q 030429 127 SEALSKQALVDQLGLESITDREVCCYMISC 156 (177)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 156 (177)
.+.+..+.+.+.++. .++.++++.+|.
T Consensus 158 v~~~~l~~l~~~l~~---lnp~A~i~~~~~ 184 (323)
T COG0523 158 VDAEELEALEARLRK---LNPRARIIETSY 184 (323)
T ss_pred CCHHHHHHHHHHHHH---hCCCCeEEEccc
Confidence 987654444444432 234446777776
|
|
| >TIGR00959 ffh signal recognition particle protein | Back alignment and domain information |
|---|
Probab=98.27 E-value=3.4e-06 Score=64.62 Aligned_cols=79 Identities=16% Similarity=0.071 Sum_probs=42.0
Q ss_pred CCEEEEEEecCCchhh----HHhHHH--HhcCCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccc
Q 030429 55 GNVTIKLWDLGGQRRF----RTMWER--YCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSE 128 (177)
Q Consensus 55 ~~~~~~~~D~~g~~~~----~~~~~~--~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~ 128 (177)
.++++.++||||.... ...... ..-..+.+++|+|++.. .+.......+.... ...=+|+||.|...
T Consensus 181 ~~~DvVIIDTaGr~~~d~~l~~eL~~i~~~~~p~e~lLVvda~tg---q~~~~~a~~f~~~v----~i~giIlTKlD~~~ 253 (428)
T TIGR00959 181 NGFDVVIVDTAGRLQIDEELMEELAAIKEILNPDEILLVVDAMTG---QDAVNTAKTFNERL----GLTGVVLTKLDGDA 253 (428)
T ss_pred cCCCEEEEeCCCccccCHHHHHHHHHHHHhhCCceEEEEEeccch---HHHHHHHHHHHhhC----CCCEEEEeCccCcc
Confidence 3467899999994322 111111 12347889999998643 33333333332221 12346699999543
Q ss_pred -ccCHHHHHHHhC
Q 030429 129 -ALSKQALVDQLG 140 (177)
Q Consensus 129 -~~~~~~~~~~~~ 140 (177)
.-....+....+
T Consensus 254 ~~G~~lsi~~~~~ 266 (428)
T TIGR00959 254 RGGAALSVRSVTG 266 (428)
T ss_pred cccHHHHHHHHHC
Confidence 222344444444
|
This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle. |
| >PRK00098 GTPase RsgA; Reviewed | Back alignment and domain information |
|---|
Probab=98.22 E-value=3.6e-06 Score=61.85 Aligned_cols=24 Identities=29% Similarity=0.380 Sum_probs=21.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCC
Q 030429 13 MELSLIGLQNAGKTSLVNTIATGG 36 (177)
Q Consensus 13 ~~i~i~G~~~~GKSsli~~l~~~~ 36 (177)
..++++|++|+|||||+|++.+..
T Consensus 165 k~~~~~G~sgvGKStlin~l~~~~ 188 (298)
T PRK00098 165 KVTVLAGQSGVGKSTLLNALAPDL 188 (298)
T ss_pred ceEEEECCCCCCHHHHHHHHhCCc
Confidence 468999999999999999998543
|
|
| >PRK11537 putative GTP-binding protein YjiA; Provisional | Back alignment and domain information |
|---|
Probab=98.22 E-value=1.9e-05 Score=58.44 Aligned_cols=21 Identities=38% Similarity=0.490 Sum_probs=18.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 030429 14 ELSLIGLQNAGKTSLVNTIAT 34 (177)
Q Consensus 14 ~i~i~G~~~~GKSsli~~l~~ 34 (177)
-.++.|.-|||||||+|+++.
T Consensus 6 v~iltGFLGaGKTTll~~ll~ 26 (318)
T PRK11537 6 VTLLTGFLGAGKTTLLRHILN 26 (318)
T ss_pred EEEEEECCCCCHHHHHHHHHh
Confidence 357889999999999999984
|
|
| >cd01854 YjeQ_engC YjeQ/EngC | Back alignment and domain information |
|---|
Probab=98.21 E-value=4.1e-06 Score=61.24 Aligned_cols=24 Identities=25% Similarity=0.416 Sum_probs=21.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCC
Q 030429 13 MELSLIGLQNAGKTSLVNTIATGG 36 (177)
Q Consensus 13 ~~i~i~G~~~~GKSsli~~l~~~~ 36 (177)
-.++++|++|+|||||+|.+.+..
T Consensus 162 k~~~~~G~sg~GKSTlin~l~~~~ 185 (287)
T cd01854 162 KTSVLVGQSGVGKSTLINALLPDL 185 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHhchh
Confidence 578999999999999999998643
|
YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation. |
| >COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion] | Back alignment and domain information |
|---|
Probab=98.21 E-value=1.2e-05 Score=60.44 Aligned_cols=111 Identities=15% Similarity=0.190 Sum_probs=63.1
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccc-----------------------eeEEEE-----------EeCC
Q 030429 11 QEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVG-----------------------FNMRKV-----------TKGN 56 (177)
Q Consensus 11 ~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~-----------------------~~~~~~-----------~~~~ 56 (177)
+.-.|.++||+||||||-+-.|...-.........+ .+...+ ...+
T Consensus 202 ~~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~vv~~~~el~~ai~~l~~ 281 (407)
T COG1419 202 QKRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAVEQLKTYADIMGVPLEVVYSPKELAEAIEALRD 281 (407)
T ss_pred cCcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhhHHHHHHHHHHHhCCceEEecCHHHHHHHHHHhhc
Confidence 366889999999999999888863222111112222 111111 1245
Q ss_pred EEEEEEecCCchhh----HHhHHHHhcC--CCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccc
Q 030429 57 VTIKLWDLGGQRRF----RTMWERYCRG--VSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSE 128 (177)
Q Consensus 57 ~~~~~~D~~g~~~~----~~~~~~~~~~--~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~ 128 (177)
+++.++||.|...+ ...+..++.. ..-+.+|++++.. ...+...+..+... ... =+++||.|-..
T Consensus 282 ~d~ILVDTaGrs~~D~~~i~el~~~~~~~~~i~~~Lvlsat~K--~~dlkei~~~f~~~----~i~-~~I~TKlDET~ 352 (407)
T COG1419 282 CDVILVDTAGRSQYDKEKIEELKELIDVSHSIEVYLVLSATTK--YEDLKEIIKQFSLF----PID-GLIFTKLDETT 352 (407)
T ss_pred CCEEEEeCCCCCccCHHHHHHHHHHHhccccceEEEEEecCcc--hHHHHHHHHHhccC----Ccc-eeEEEcccccC
Confidence 78999999995433 2333444433 3566777887653 45555555544222 222 24589999644
|
|
| >PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=98.17 E-value=4.9e-06 Score=62.69 Aligned_cols=112 Identities=18% Similarity=0.123 Sum_probs=61.1
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhcC----CC-----CCCCC------------CccceeEEEEE--------------eC
Q 030429 11 QEMELSLIGLQNAGKTSLVNTIATG----GY-----SEDMI------------PTVGFNMRKVT--------------KG 55 (177)
Q Consensus 11 ~~~~i~i~G~~~~GKSsli~~l~~~----~~-----~~~~~------------~t~~~~~~~~~--------------~~ 55 (177)
..-.|+++|++||||||++..|... .. ..+.. ...++...... ..
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aDt~RiaAvEQLk~yae~lgipv~v~~d~~~L~~aL~~lk~~~ 319 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEA 319 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHhhhcCCcEEecCCHHHHHHHHHHHHhcc
Confidence 3468999999999999999999621 00 01000 01122222110 01
Q ss_pred CEEEEEEecCCchhhH----HhHHHHh--cCCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccc
Q 030429 56 NVTIKLWDLGGQRRFR----TMWERYC--RGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEA 129 (177)
Q Consensus 56 ~~~~~~~D~~g~~~~~----~~~~~~~--~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~ 129 (177)
++++.++||+|..... ..+...+ ...+.+++|+|++.. ...+......+.. -..-=+++||.|-...
T Consensus 320 ~~DvVLIDTaGRs~kd~~lm~EL~~~lk~~~PdevlLVLsATtk--~~d~~~i~~~F~~-----~~idglI~TKLDET~k 392 (436)
T PRK11889 320 RVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMK--SKDMIEIITNFKD-----IHIDGIVFTKFDETAS 392 (436)
T ss_pred CCCEEEEeCccccCcCHHHHHHHHHHHhhcCCCeEEEEECCccC--hHHHHHHHHHhcC-----CCCCEEEEEcccCCCC
Confidence 4688999999953321 1122222 235778999988543 2333333333321 1123466999997553
|
|
| >PF09547 Spore_IV_A: Stage IV sporulation protein A (spore_IV_A); InterPro: IPR014201 This entry is designated stage IV sporulation protein A | Back alignment and domain information |
|---|
Probab=98.17 E-value=0.00014 Score=55.14 Aligned_cols=23 Identities=13% Similarity=0.479 Sum_probs=20.7
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhc
Q 030429 12 EMELSLIGLQNAGKTSLVNTIAT 34 (177)
Q Consensus 12 ~~~i~i~G~~~~GKSsli~~l~~ 34 (177)
.+=|+++||..+|||||++||..
T Consensus 17 dIYiGVVGPVRTGKSTFIKRFMe 39 (492)
T PF09547_consen 17 DIYIGVVGPVRTGKSTFIKRFME 39 (492)
T ss_pred ceEEEeecCcccCchhHHHHHHH
Confidence 46689999999999999999973
|
It acts in the mother cell compartment and plays a role in spore coat morphogenesis []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species. |
| >PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=98.13 E-value=1.5e-05 Score=60.86 Aligned_cols=112 Identities=16% Similarity=0.108 Sum_probs=60.1
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcCCC-----CC------CC------------CCccceeEEEE-----------EeC
Q 030429 10 KQEMELSLIGLQNAGKTSLVNTIATGGY-----SE------DM------------IPTVGFNMRKV-----------TKG 55 (177)
Q Consensus 10 ~~~~~i~i~G~~~~GKSsli~~l~~~~~-----~~------~~------------~~t~~~~~~~~-----------~~~ 55 (177)
...-.++++|++|+||||++..+.+... .. +. ....++..... ...
T Consensus 189 ~~g~vi~lvGpnG~GKTTtlakLA~~~~~~~~~~~v~~i~~d~~rigalEQL~~~a~ilGvp~~~v~~~~dl~~al~~l~ 268 (420)
T PRK14721 189 EQGGVYALIGPTGVGKTTTTAKLAARAVIRHGADKVALLTTDSYRIGGHEQLRIYGKLLGVSVRSIKDIADLQLMLHELR 268 (420)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecCCcchhHHHHHHHHHHHcCCceecCCCHHHHHHHHHHhc
Confidence 3456899999999999999998864210 00 00 00111111110 123
Q ss_pred CEEEEEEecCCchhhH----HhHHHHh--cCCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccc
Q 030429 56 NVTIKLWDLGGQRRFR----TMWERYC--RGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSE 128 (177)
Q Consensus 56 ~~~~~~~D~~g~~~~~----~~~~~~~--~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~ 128 (177)
+..+.++||+|..... .....+. ....-.++|+|++.. ...+......+.. -..-=+++||.|-..
T Consensus 269 ~~d~VLIDTaGrsqrd~~~~~~l~~l~~~~~~~~~~LVl~at~~--~~~~~~~~~~f~~-----~~~~~~I~TKlDEt~ 340 (420)
T PRK14721 269 GKHMVLIDTVGMSQRDQMLAEQIAMLSQCGTQVKHLLLLNATSS--GDTLDEVISAYQG-----HGIHGCIITKVDEAA 340 (420)
T ss_pred CCCEEEecCCCCCcchHHHHHHHHHHhccCCCceEEEEEcCCCC--HHHHHHHHHHhcC-----CCCCEEEEEeeeCCC
Confidence 4678899999954322 2222221 224567899998643 3344443333311 112335689999654
|
|
| >PRK12727 flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=98.11 E-value=2.9e-05 Score=60.70 Aligned_cols=112 Identities=18% Similarity=0.230 Sum_probs=60.8
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcC--------CC---CCCCC------------CccceeEEEEE-----------eC
Q 030429 10 KQEMELSLIGLQNAGKTSLVNTIATG--------GY---SEDMI------------PTVGFNMRKVT-----------KG 55 (177)
Q Consensus 10 ~~~~~i~i~G~~~~GKSsli~~l~~~--------~~---~~~~~------------~t~~~~~~~~~-----------~~ 55 (177)
+..-.|+|+|++|+||||++..|... .+ ..+.. ...++.+.... ..
T Consensus 348 ~~G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDtyRigA~EQLk~ya~iLgv~v~~a~d~~~L~~aL~~l~ 427 (559)
T PRK12727 348 ERGGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVGGREQLHSYGRQLGIAVHEADSAESLLDLLERLR 427 (559)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEecccccccHHHHHHHhhcccCceeEecCcHHHHHHHHHHhc
Confidence 45668899999999999999888631 00 00000 01112222211 23
Q ss_pred CEEEEEEecCCchhhHHhHHH---Hhc--CCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccc
Q 030429 56 NVTIKLWDLGGQRRFRTMWER---YCR--GVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSE 128 (177)
Q Consensus 56 ~~~~~~~D~~g~~~~~~~~~~---~~~--~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~ 128 (177)
++++.++||+|.......... .+. .....++|++.+. +.......+..+.. ..+.-+|+||+|...
T Consensus 428 ~~DLVLIDTaG~s~~D~~l~eeL~~L~aa~~~a~lLVLpAts--s~~Dl~eii~~f~~-----~~~~gvILTKlDEt~ 498 (559)
T PRK12727 428 DYKLVLIDTAGMGQRDRALAAQLNWLRAARQVTSLLVLPANA--HFSDLDEVVRRFAH-----AKPQGVVLTKLDETG 498 (559)
T ss_pred cCCEEEecCCCcchhhHHHHHHHHHHHHhhcCCcEEEEECCC--ChhHHHHHHHHHHh-----hCCeEEEEecCcCcc
Confidence 578899999995432211110 011 1235677777753 34444444433322 235668899999744
|
|
| >PRK12726 flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=98.07 E-value=9.7e-05 Score=55.65 Aligned_cols=26 Identities=27% Similarity=0.364 Sum_probs=22.0
Q ss_pred cccceeEEEEEcCCCCCHHHHHHHHh
Q 030429 8 FFKQEMELSLIGLQNAGKTSLVNTIA 33 (177)
Q Consensus 8 ~~~~~~~i~i~G~~~~GKSsli~~l~ 33 (177)
.....-.++++|+.||||||++..+.
T Consensus 202 ~~~~~~ii~lvGptGvGKTTt~akLA 227 (407)
T PRK12726 202 DLSNHRIISLIGQTGVGKTTTLVKLG 227 (407)
T ss_pred eecCCeEEEEECCCCCCHHHHHHHHH
Confidence 34456678999999999999999987
|
|
| >PRK13695 putative NTPase; Provisional | Back alignment and domain information |
|---|
Probab=98.04 E-value=0.00032 Score=47.47 Aligned_cols=21 Identities=43% Similarity=0.639 Sum_probs=19.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHh
Q 030429 13 MELSLIGLQNAGKTSLVNTIA 33 (177)
Q Consensus 13 ~~i~i~G~~~~GKSsli~~l~ 33 (177)
++|+++|++|+|||||+..+.
T Consensus 1 ~~i~ltG~~G~GKTTll~~i~ 21 (174)
T PRK13695 1 MKIGITGPPGVGKTTLVLKIA 21 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 489999999999999999865
|
|
| >PRK12723 flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=98.03 E-value=9e-05 Score=56.27 Aligned_cols=111 Identities=14% Similarity=0.153 Sum_probs=61.8
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhcCCC-------------CCC------------CCCccceeEEEE-----------Ee
Q 030429 11 QEMELSLIGLQNAGKTSLVNTIATGGY-------------SED------------MIPTVGFNMRKV-----------TK 54 (177)
Q Consensus 11 ~~~~i~i~G~~~~GKSsli~~l~~~~~-------------~~~------------~~~t~~~~~~~~-----------~~ 54 (177)
.+-.|+++|++|+||||.+..+...-. ..+ +....+..+... ..
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~~~~~~~~l~~~L~~~ 252 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEITQS 252 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceEeeCcHHHHHHHHHHh
Confidence 346899999999999999988863100 000 001112222211 12
Q ss_pred CCEEEEEEecCCchhhH----HhHHHHhcC---CCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcc
Q 030429 55 GNVTIKLWDLGGQRRFR----TMWERYCRG---VSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKS 127 (177)
Q Consensus 55 ~~~~~~~~D~~g~~~~~----~~~~~~~~~---~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~ 127 (177)
.++.+.++||+|..... ......+.. ..-.++|+|++.. ...+...+...... .+-=+++||.|-.
T Consensus 253 ~~~DlVLIDTaGr~~~~~~~l~el~~~l~~~~~~~e~~LVlsat~~--~~~~~~~~~~~~~~-----~~~~~I~TKlDet 325 (388)
T PRK12723 253 KDFDLVLVDTIGKSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTK--TSDVKEIFHQFSPF-----SYKTVIFTKLDET 325 (388)
T ss_pred CCCCEEEEcCCCCCccCHHHHHHHHHHHHhcCCCCeEEEEEcCCCC--HHHHHHHHHHhcCC-----CCCEEEEEeccCC
Confidence 45789999999943321 122233332 2368899999764 34444444443211 1234669999975
Q ss_pred c
Q 030429 128 E 128 (177)
Q Consensus 128 ~ 128 (177)
.
T Consensus 326 ~ 326 (388)
T PRK12723 326 T 326 (388)
T ss_pred C
Confidence 4
|
|
| >PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems | Back alignment and domain information |
|---|
Probab=98.02 E-value=5.2e-06 Score=53.80 Aligned_cols=32 Identities=25% Similarity=0.443 Sum_probs=28.6
Q ss_pred eeecccccceeEEEEEcCCCCCHHHHHHHHhc
Q 030429 3 LHISLFFKQEMELSLIGLQNAGKTSLVNTIAT 34 (177)
Q Consensus 3 ~~~~~~~~~~~~i~i~G~~~~GKSsli~~l~~ 34 (177)
.+.++..+..-.++|+|+.|||||||++.+.+
T Consensus 2 ~~v~~~i~~g~~~~i~G~nGsGKStLl~~l~g 33 (137)
T PF00005_consen 2 KNVSLEIKPGEIVAIVGPNGSGKSTLLKALAG 33 (137)
T ss_dssp EEEEEEEETTSEEEEEESTTSSHHHHHHHHTT
T ss_pred CceEEEEcCCCEEEEEccCCCccccceeeecc
Confidence 46778888889999999999999999999973
|
ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D .... |
| >COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.01 E-value=8e-06 Score=56.29 Aligned_cols=31 Identities=26% Similarity=0.394 Sum_probs=27.8
Q ss_pred eeecccccceeEEEEEcCCCCCHHHHHHHHh
Q 030429 3 LHISLFFKQEMELSLIGLQNAGKTSLVNTIA 33 (177)
Q Consensus 3 ~~~~~~~~~~~~i~i~G~~~~GKSsli~~l~ 33 (177)
+.+++...+.-.++++|++|||||||++.+.
T Consensus 19 kgi~l~v~~Gevv~iiGpSGSGKSTlLRclN 49 (240)
T COG1126 19 KGISLSVEKGEVVVIIGPSGSGKSTLLRCLN 49 (240)
T ss_pred cCcceeEcCCCEEEEECCCCCCHHHHHHHHH
Confidence 4567788888899999999999999999997
|
|
| >PRK00771 signal recognition particle protein Srp54; Provisional | Back alignment and domain information |
|---|
Probab=98.01 E-value=1.6e-05 Score=61.22 Aligned_cols=24 Identities=33% Similarity=0.538 Sum_probs=21.0
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHh
Q 030429 10 KQEMELSLIGLQNAGKTSLVNTIA 33 (177)
Q Consensus 10 ~~~~~i~i~G~~~~GKSsli~~l~ 33 (177)
..+..|+++|++|+||||++..+.
T Consensus 93 ~~p~vI~lvG~~GsGKTTtaakLA 116 (437)
T PRK00771 93 LKPQTIMLVGLQGSGKTTTAAKLA 116 (437)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHH
Confidence 356789999999999999998886
|
|
| >PRK12724 flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=98.01 E-value=2.3e-05 Score=59.68 Aligned_cols=110 Identities=16% Similarity=0.180 Sum_probs=59.4
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCC-C---------CCCCC------------CccceeEEEE----------EeCCEEE
Q 030429 12 EMELSLIGLQNAGKTSLVNTIATGG-Y---------SEDMI------------PTVGFNMRKV----------TKGNVTI 59 (177)
Q Consensus 12 ~~~i~i~G~~~~GKSsli~~l~~~~-~---------~~~~~------------~t~~~~~~~~----------~~~~~~~ 59 (177)
...++++|++||||||++.+|.... . ..+.. ...+...... ...++++
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt~R~aA~eQLk~yAe~lgvp~~~~~~~~~l~~~l~~~~~D~ 302 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYRIAAIEQLKRYADTMGMPFYPVKDIKKFKETLARDGSEL 302 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccchhhhHHHHHHHHHHhcCCCeeehHHHHHHHHHHHhCCCCE
Confidence 4568899999999999999997311 0 00000 0111222211 1146788
Q ss_pred EEEecCCchhh-H---HhHHHHhc-----CCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccc
Q 030429 60 KLWDLGGQRRF-R---TMWERYCR-----GVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSE 128 (177)
Q Consensus 60 ~~~D~~g~~~~-~---~~~~~~~~-----~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~ 128 (177)
.++||+|.... . ..+..++. ...-.++|+|++.. ...+....... .. -.+-=+|+||.|-..
T Consensus 303 VLIDTaGr~~rd~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~--~~~~~~~~~~f-~~----~~~~glIlTKLDEt~ 373 (432)
T PRK12724 303 ILIDTAGYSHRNLEQLERMQSFYSCFGEKDSVENLLVLSSTSS--YHHTLTVLKAY-ES----LNYRRILLTKLDEAD 373 (432)
T ss_pred EEEeCCCCCccCHHHHHHHHHHHHhhcCCCCCeEEEEEeCCCC--HHHHHHHHHHh-cC----CCCCEEEEEcccCCC
Confidence 99999995321 1 12222222 23468899998664 33333333332 21 122346699999754
|
|
| >cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain | Back alignment and domain information |
|---|
Probab=98.00 E-value=0.00011 Score=44.31 Aligned_cols=69 Identities=14% Similarity=0.097 Sum_probs=44.8
Q ss_pred EEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEeCCEEEEEEecCCchhhHHh-HHHHhcCCCEEEEEEeCCCC
Q 030429 15 LSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTM-WERYCRGVSAILYVVDAADR 93 (177)
Q Consensus 15 i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~-~~~~~~~~d~~i~v~d~~~~ 93 (177)
+++.|.+|+||||+...+...-.. .+.....++ ++.++|+++....... .......+|.++++++.+..
T Consensus 2 ~~~~g~~G~Gktt~~~~l~~~l~~------~g~~v~~~~----d~iivD~~~~~~~~~~~~~~~~~~~~~vi~v~~~~~~ 71 (99)
T cd01983 2 IVVTGKGGVGKTTLAANLAAALAK------RGKRVLLID----DYVLIDTPPGLGLLVLLCLLALLAADLVIIVTTPEAL 71 (99)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH------CCCeEEEEC----CEEEEeCCCCccchhhhhhhhhhhCCEEEEecCCchh
Confidence 678899999999999888732111 111222222 7888899986543321 14456678999999987544
|
Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion. |
| >KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.97 E-value=1.2e-05 Score=59.83 Aligned_cols=97 Identities=19% Similarity=0.306 Sum_probs=55.1
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhc----CC----------CCCC-CC------CccceeEEE-----------------
Q 030429 10 KQEMELSLIGLQNAGKTSLVNTIAT----GG----------YSED-MI------PTVGFNMRK----------------- 51 (177)
Q Consensus 10 ~~~~~i~i~G~~~~GKSsli~~l~~----~~----------~~~~-~~------~t~~~~~~~----------------- 51 (177)
.++--|.++|-.|+||||.+-.+.. .. |... .. .-..+.++.
T Consensus 99 ~kpsVimfVGLqG~GKTTtc~KlA~y~kkkG~K~~LvcaDTFRagAfDQLkqnA~k~~iP~ygsyte~dpv~ia~egv~~ 178 (483)
T KOG0780|consen 99 GKPSVIMFVGLQGSGKTTTCTKLAYYYKKKGYKVALVCADTFRAGAFDQLKQNATKARVPFYGSYTEADPVKIASEGVDR 178 (483)
T ss_pred CCCcEEEEEeccCCCcceeHHHHHHHHHhcCCceeEEeecccccchHHHHHHHhHhhCCeeEecccccchHHHHHHHHHH
Confidence 4456789999999999999988872 11 1000 00 000111111
Q ss_pred EEeCCEEEEEEecCCchh-hHHhHHH-----HhcCCCEEEEEEeCCCCCCHHHHHHHHHHH
Q 030429 52 VTKGNVTIKLWDLGGQRR-FRTMWER-----YCRGVSAILYVVDAADRDSVPIARSELHEL 106 (177)
Q Consensus 52 ~~~~~~~~~~~D~~g~~~-~~~~~~~-----~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~ 106 (177)
+..+++++.++||.|-.. ..++..+ -.-..|-+++|.|++-.-.-+....-+.+.
T Consensus 179 fKke~fdvIIvDTSGRh~qe~sLfeEM~~v~~ai~Pd~vi~VmDasiGQaae~Qa~aFk~~ 239 (483)
T KOG0780|consen 179 FKKENFDVIIVDTSGRHKQEASLFEEMKQVSKAIKPDEIIFVMDASIGQAAEAQARAFKET 239 (483)
T ss_pred HHhcCCcEEEEeCCCchhhhHHHHHHHHHHHhhcCCCeEEEEEeccccHhHHHHHHHHHHh
Confidence 223578999999999322 2222222 133579999999997654444444444433
|
|
| >KOG2484 consensus GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.96 E-value=8.4e-06 Score=60.74 Aligned_cols=56 Identities=27% Similarity=0.416 Sum_probs=38.6
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeE--EEEEeCCEEEEEEecCC
Q 030429 9 FKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNM--RKVTKGNVTIKLWDLGG 66 (177)
Q Consensus 9 ~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~--~~~~~~~~~~~~~D~~g 66 (177)
.++.++++|+|-|++||||+||+|......... .+.+++. ..+ .-+..+.+.|.||
T Consensus 249 lk~sIrvGViG~PNVGKSSvINsL~~~k~C~vg-~~pGvT~smqeV-~Ldk~i~llDsPg 306 (435)
T KOG2484|consen 249 LKTSIRVGIIGYPNVGKSSVINSLKRRKACNVG-NVPGVTRSMQEV-KLDKKIRLLDSPG 306 (435)
T ss_pred cCcceEeeeecCCCCChhHHHHHHHHhccccCC-CCccchhhhhhe-eccCCceeccCCc
Confidence 477899999999999999999999866553221 2222222 222 2234677889999
|
|
| >PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A | Back alignment and domain information |
|---|
Probab=97.95 E-value=8.4e-06 Score=51.66 Aligned_cols=21 Identities=24% Similarity=0.452 Sum_probs=19.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 030429 14 ELSLIGLQNAGKTSLVNTIAT 34 (177)
Q Consensus 14 ~i~i~G~~~~GKSsli~~l~~ 34 (177)
.|+|.|++||||||+.+.|..
T Consensus 1 vI~I~G~~gsGKST~a~~La~ 21 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAE 21 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 489999999999999999984
|
... |
| >TIGR02475 CobW cobalamin biosynthesis protein CobW | Back alignment and domain information |
|---|
Probab=97.95 E-value=0.00013 Score=54.67 Aligned_cols=20 Identities=30% Similarity=0.507 Sum_probs=18.3
Q ss_pred EEEEcCCCCCHHHHHHHHhc
Q 030429 15 LSLIGLQNAGKTSLVNTIAT 34 (177)
Q Consensus 15 i~i~G~~~~GKSsli~~l~~ 34 (177)
.++.|.-|+|||||+++++.
T Consensus 7 ~iltGFLGaGKTTll~~ll~ 26 (341)
T TIGR02475 7 TIVTGFLGAGKTTLIRHLLQ 26 (341)
T ss_pred EEEEECCCCCHHHHHHHHHh
Confidence 57889999999999999984
|
A broader CobW family is delineated by two PFAM models which identify the N- and C-terminal domains (pfam02492 and pfam07683). |
| >COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.94 E-value=8.4e-06 Score=57.34 Aligned_cols=32 Identities=25% Similarity=0.382 Sum_probs=28.1
Q ss_pred eeecccccceeEEEEEcCCCCCHHHHHHHHhc
Q 030429 3 LHISLFFKQEMELSLIGLQNAGKTSLVNTIAT 34 (177)
Q Consensus 3 ~~~~~~~~~~~~i~i~G~~~~GKSsli~~l~~ 34 (177)
..+++.....--|+++|++|||||||++-+.+
T Consensus 20 ~~i~L~v~~GEfvsilGpSGcGKSTLLriiAG 51 (248)
T COG1116 20 EDINLSVEKGEFVAILGPSGCGKSTLLRLIAG 51 (248)
T ss_pred ccceeEECCCCEEEEECCCCCCHHHHHHHHhC
Confidence 45677788888899999999999999999985
|
|
| >COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=97.94 E-value=2.5e-05 Score=59.06 Aligned_cols=28 Identities=32% Similarity=0.465 Sum_probs=23.5
Q ss_pred cccccceeEEEEEcCCCCCHHHHHHHHh
Q 030429 6 SLFFKQEMELSLIGLQNAGKTSLVNTIA 33 (177)
Q Consensus 6 ~~~~~~~~~i~i~G~~~~GKSsli~~l~ 33 (177)
.+..+.+..|+++|-.|+||||.+-.|.
T Consensus 94 ~l~~~~P~vImmvGLQGsGKTTt~~KLA 121 (451)
T COG0541 94 NLAKKPPTVILMVGLQGSGKTTTAGKLA 121 (451)
T ss_pred ccCCCCCeEEEEEeccCCChHhHHHHHH
Confidence 3445677899999999999999988776
|
|
| >PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1) | Back alignment and domain information |
|---|
Probab=97.94 E-value=1.7e-05 Score=42.75 Aligned_cols=46 Identities=26% Similarity=0.359 Sum_probs=29.2
Q ss_pred hcCCCEEEEEEeCCCCCC--HHHHHHHHHHHHcCCCCCCCcEEEEeeCCC
Q 030429 78 CRGVSAILYVVDAADRDS--VPIARSELHELLMKPSLSGIPLLVLGNKID 125 (177)
Q Consensus 78 ~~~~d~~i~v~d~~~~~~--~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D 125 (177)
.+-.+++++++|.|..+. .++....+.++.... .++|+++|.||+|
T Consensus 11 ~hL~~~ilfi~D~Se~CGysie~Q~~L~~~ik~~F--~~~P~i~V~nK~D 58 (58)
T PF06858_consen 11 AHLADAILFIIDPSEQCGYSIEEQLSLFKEIKPLF--PNKPVIVVLNKID 58 (58)
T ss_dssp GGT-SEEEEEE-TT-TTSS-HHHHHHHHHHHHHHT--TTS-EEEEE--TT
T ss_pred HhhcceEEEEEcCCCCCCCCHHHHHHHHHHHHHHc--CCCCEEEEEeccC
Confidence 344689999999997654 556566666665543 3799999999998
|
The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A. |
| >PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=97.93 E-value=5.4e-05 Score=61.70 Aligned_cols=23 Identities=30% Similarity=0.420 Sum_probs=20.2
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhc
Q 030429 12 EMELSLIGLQNAGKTSLVNTIAT 34 (177)
Q Consensus 12 ~~~i~i~G~~~~GKSsli~~l~~ 34 (177)
.--|+++|++|+||||++..+..
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~ 207 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAA 207 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHh
Confidence 45789999999999999999873
|
|
| >KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.93 E-value=3.9e-05 Score=59.56 Aligned_cols=31 Identities=13% Similarity=0.382 Sum_probs=28.3
Q ss_pred eeecccccceeEEEEEcCCCCCHHHHHHHHh
Q 030429 3 LHISLFFKQEMELSLIGLQNAGKTSLVNTIA 33 (177)
Q Consensus 3 ~~~~~~~~~~~~i~i~G~~~~GKSsli~~l~ 33 (177)
+-.++..++.-||+|+|.+||||||+++.++
T Consensus 369 ~gvsf~I~kGekVaIvG~nGsGKSTilr~Ll 399 (591)
T KOG0057|consen 369 KGVSFTIPKGEKVAIVGSNGSGKSTILRLLL 399 (591)
T ss_pred cceeEEecCCCEEEEECCCCCCHHHHHHHHH
Confidence 3467889999999999999999999999998
|
|
| >COG1162 Predicted GTPases [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.92 E-value=0.00014 Score=52.89 Aligned_cols=88 Identities=18% Similarity=0.168 Sum_probs=61.8
Q ss_pred HhcCCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccCHHH--HHHHhCcccccCCceeEEEe
Q 030429 77 YCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQA--LVDQLGLESITDREVCCYMI 154 (177)
Q Consensus 77 ~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 154 (177)
-..+.|-+++|+.+.+|+.-......+..+... .++.-++++||+|+.+.+.... ....+ ..-+.+.+.+
T Consensus 76 ~v~n~d~~iiIvs~~~P~~~~~~ldR~Lv~ae~---~gi~pvIvlnK~DL~~~~~~~~~~~~~~y-----~~~gy~v~~~ 147 (301)
T COG1162 76 PVANNDQAIIVVSLVDPDFNTNLLDRYLVLAEA---GGIEPVIVLNKIDLLDDEEAAVKELLREY-----EDIGYPVLFV 147 (301)
T ss_pred cccccceEEEEEeccCCCCCHHHHHHHHHHHHH---cCCcEEEEEEccccCcchHHHHHHHHHHH-----HhCCeeEEEe
Confidence 344578889999998887666665555555554 4566677799999988765542 22222 2234478999
Q ss_pred eecCCCChHHHHHHHHHH
Q 030429 155 SCKDSINIDAVIDWLIKH 172 (177)
Q Consensus 155 Sa~~~~~i~~l~~~l~~~ 172 (177)
|++++.+++++.+.+...
T Consensus 148 s~~~~~~~~~l~~~l~~~ 165 (301)
T COG1162 148 SAKNGDGLEELAELLAGK 165 (301)
T ss_pred cCcCcccHHHHHHHhcCC
Confidence 999999999999887543
|
|
| >PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated | Back alignment and domain information |
|---|
Probab=97.91 E-value=0.00014 Score=52.66 Aligned_cols=111 Identities=18% Similarity=0.125 Sum_probs=62.0
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCC----C-----CCC------------CCCccceeEEEE--------------EeCC
Q 030429 12 EMELSLIGLQNAGKTSLVNTIATGG----Y-----SED------------MIPTVGFNMRKV--------------TKGN 56 (177)
Q Consensus 12 ~~~i~i~G~~~~GKSsli~~l~~~~----~-----~~~------------~~~t~~~~~~~~--------------~~~~ 56 (177)
.-+++++|++|+||||++..+...- . ..+ +....++..... ...+
T Consensus 75 ~~~i~~~G~~g~GKTtl~~~l~~~l~~~~~~v~~i~~D~~ri~~~~ql~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~ 154 (270)
T PRK06731 75 VQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEAR 154 (270)
T ss_pred CCEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHHhhhcCceEEecCCHHHHHHHHHHHHhcCC
Confidence 3699999999999999988876320 0 000 111122222211 0125
Q ss_pred EEEEEEecCCchhhH----HhHHHHh--cCCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccc
Q 030429 57 VTIKLWDLGGQRRFR----TMWERYC--RGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEA 129 (177)
Q Consensus 57 ~~~~~~D~~g~~~~~----~~~~~~~--~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~ 129 (177)
+++.++||||..... ..+...+ ...+.+++|+|++.. ..........+.. -.+-=+++||.|-...
T Consensus 155 ~D~ViIDt~Gr~~~~~~~l~el~~~~~~~~~~~~~LVl~a~~~--~~d~~~~~~~f~~-----~~~~~~I~TKlDet~~ 226 (270)
T PRK06731 155 VDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMK--SKDMIEIITNFKD-----IHIDGIVFTKFDETAS 226 (270)
T ss_pred CCEEEEECCCCCcCCHHHHHHHHHHHhhhCCCeEEEEEcCccC--HHHHHHHHHHhCC-----CCCCEEEEEeecCCCC
Confidence 788999999954321 1122222 245678999998642 3344444444321 1233466999997653
|
|
| >COG3523 IcmF Type VI protein secretion system component VasK [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.91 E-value=9.1e-05 Score=62.91 Aligned_cols=113 Identities=22% Similarity=0.267 Sum_probs=62.8
Q ss_pred EEEEcCCCCCHHHHHHHHhcCCCC--CCC--CCccceeEEEEE-eCCEEEEEEecCC----c----hhhHHhHHHH----
Q 030429 15 LSLIGLQNAGKTSLVNTIATGGYS--EDM--IPTVGFNMRKVT-KGNVTIKLWDLGG----Q----RRFRTMWERY---- 77 (177)
Q Consensus 15 i~i~G~~~~GKSsli~~l~~~~~~--~~~--~~t~~~~~~~~~-~~~~~~~~~D~~g----~----~~~~~~~~~~---- 77 (177)
-+++|++|+||||++..-- ..|+ ... ....+..+...+ .-.-+-.++||.| + +.....|..+
T Consensus 128 y~viG~pgsGKTtal~~sg-l~Fpl~~~~~~~~~~~~gT~~cdwwf~deaVlIDtaGry~~q~s~~~~~~~~W~~fL~lL 206 (1188)
T COG3523 128 YMVIGPPGSGKTTALLNSG-LQFPLAEQMGALGLAGPGTRNCDWWFTDEAVLIDTAGRYITQDSADEVDRAEWLGFLGLL 206 (1188)
T ss_pred eEEecCCCCCcchHHhccc-ccCcchhhhccccccCCCCcccCcccccceEEEcCCcceecccCcchhhHHHHHHHHHHH
Confidence 3789999999999977642 2221 111 011111122211 1122455779988 2 1223344432
Q ss_pred -----hcCCCEEEEEEeCCCCCC---HH------HHHHHHHHHHcCCCCCCCcEEEEeeCCCcccc
Q 030429 78 -----CRGVSAILYVVDAADRDS---VP------IARSELHELLMKPSLSGIPLLVLGNKIDKSEA 129 (177)
Q Consensus 78 -----~~~~d~~i~v~d~~~~~~---~~------~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~ 129 (177)
.+..++||+.+|+++--+ -+ .++..+.++.... ....|+.+++||.|+...
T Consensus 207 kk~R~~~piNGiiltlsv~~L~~~~~~~~~~~~~~LR~RL~El~~tL-~~~~PVYl~lTk~Dll~G 271 (1188)
T COG3523 207 KKYRRRRPLNGIILTLSVSDLLTADPAEREALARTLRARLQELRETL-HARLPVYLVLTKADLLPG 271 (1188)
T ss_pred HHhccCCCCceEEEEEEHHHHcCCCHHHHHHHHHHHHHHHHHHHHhh-ccCCceEEEEeccccccc
Confidence 345799999999965211 11 2334444543332 246899999999999874
|
|
| >PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated | Back alignment and domain information |
|---|
Probab=97.90 E-value=8.9e-05 Score=57.68 Aligned_cols=24 Identities=25% Similarity=0.387 Sum_probs=20.8
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhc
Q 030429 11 QEMELSLIGLQNAGKTSLVNTIAT 34 (177)
Q Consensus 11 ~~~~i~i~G~~~~GKSsli~~l~~ 34 (177)
+.--++++|++||||||++..|..
T Consensus 255 ~g~Vi~LvGpnGvGKTTTiaKLA~ 278 (484)
T PRK06995 255 RGGVFALMGPTGVGKTTTTAKLAA 278 (484)
T ss_pred CCcEEEEECCCCccHHHHHHHHHH
Confidence 345789999999999999999873
|
|
| >COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.90 E-value=1.1e-05 Score=55.56 Aligned_cols=31 Identities=26% Similarity=0.391 Sum_probs=26.9
Q ss_pred eeecccccceeEEEEEcCCCCCHHHHHHHHh
Q 030429 3 LHISLFFKQEMELSLIGLQNAGKTSLVNTIA 33 (177)
Q Consensus 3 ~~~~~~~~~~~~i~i~G~~~~GKSsli~~l~ 33 (177)
..+++..+++--.+++||+|||||||++.+.
T Consensus 24 ~~i~l~i~~~~VTAlIGPSGcGKST~LR~lN 54 (253)
T COG1117 24 KDINLDIPKNKVTALIGPSGCGKSTLLRCLN 54 (253)
T ss_pred ccCceeccCCceEEEECCCCcCHHHHHHHHH
Confidence 4567778888888999999999999999986
|
|
| >COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Probab=97.90 E-value=6.1e-05 Score=52.61 Aligned_cols=48 Identities=27% Similarity=0.350 Sum_probs=31.0
Q ss_pred HHhcCCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcc
Q 030429 76 RYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKS 127 (177)
Q Consensus 76 ~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~ 127 (177)
...+++|.+++|+|.|-+ ++... ..+..+..... -.++.+|.||+|-.
T Consensus 151 g~~~~vD~vivVvDpS~~-sl~ta-eri~~L~~elg--~k~i~~V~NKv~e~ 198 (255)
T COG3640 151 GTIEGVDLVIVVVDPSYK-SLRTA-ERIKELAEELG--IKRIFVVLNKVDEE 198 (255)
T ss_pred ccccCCCEEEEEeCCcHH-HHHHH-HHHHHHHHHhC--CceEEEEEeeccch
Confidence 346679999999998543 23332 23334433322 37899999999965
|
|
| >TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal | Back alignment and domain information |
|---|
Probab=97.90 E-value=0.00011 Score=52.68 Aligned_cols=19 Identities=32% Similarity=0.615 Sum_probs=17.8
Q ss_pred EEEEcCCCCCHHHHHHHHh
Q 030429 15 LSLIGLQNAGKTSLVNTIA 33 (177)
Q Consensus 15 i~i~G~~~~GKSsli~~l~ 33 (177)
|+++|.|||||||+.+.+.
T Consensus 2 Ivl~G~pGSGKST~a~~La 20 (249)
T TIGR03574 2 IILTGLPGVGKSTFSKELA 20 (249)
T ss_pred EEEEcCCCCCHHHHHHHHH
Confidence 6899999999999999986
|
Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity. |
| >COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=97.89 E-value=1.2e-05 Score=56.22 Aligned_cols=31 Identities=19% Similarity=0.398 Sum_probs=27.3
Q ss_pred eeecccccceeEEEEEcCCCCCHHHHHHHHh
Q 030429 3 LHISLFFKQEMELSLIGLQNAGKTSLVNTIA 33 (177)
Q Consensus 3 ~~~~~~~~~~~~i~i~G~~~~GKSsli~~l~ 33 (177)
...++..++.--++|+|++|||||||++-+.
T Consensus 22 ~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig 52 (226)
T COG1136 22 KDVNLEIEAGEFVAIVGPSGSGKSTLLNLLG 52 (226)
T ss_pred ccceEEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence 3567778888889999999999999999996
|
|
| >cd03110 Fer4_NifH_child This protein family's function is unkown | Back alignment and domain information |
|---|
Probab=97.88 E-value=0.00048 Score=46.76 Aligned_cols=67 Identities=18% Similarity=0.103 Sum_probs=47.0
Q ss_pred CCEEEEEEecCCchhhHHhHHHHhcCCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccc
Q 030429 55 GNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSE 128 (177)
Q Consensus 55 ~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~ 128 (177)
+.+++.++|+|+.... .....+..+|.+++++..+ ..+.......+..+... +.|+.+|+||+|...
T Consensus 91 ~~~d~viiDtpp~~~~--~~~~~l~~aD~vliv~~~~-~~~~~~~~~~~~~l~~~----~~~~~vV~N~~~~~~ 157 (179)
T cd03110 91 EGAELIIIDGPPGIGC--PVIASLTGADAALLVTEPT-PSGLHDLERAVELVRHF----GIPVGVVINKYDLND 157 (179)
T ss_pred cCCCEEEEECcCCCcH--HHHHHHHcCCEEEEEecCC-cccHHHHHHHHHHHHHc----CCCEEEEEeCCCCCc
Confidence 5688999999975432 2345577899999999986 34566666655544332 467889999999754
|
It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion. |
| >KOG0469 consensus Elongation factor 2 [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.87 E-value=9.1e-06 Score=62.46 Aligned_cols=113 Identities=20% Similarity=0.297 Sum_probs=70.8
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcCC------------CCCC--CCCccceeEEE--------------------EEeC
Q 030429 10 KQEMELSLIGLQNAGKTSLVNTIATGG------------YSED--MIPTVGFNMRK--------------------VTKG 55 (177)
Q Consensus 10 ~~~~~i~i~G~~~~GKSsli~~l~~~~------------~~~~--~~~t~~~~~~~--------------------~~~~ 55 (177)
++--++-++-....|||||..+|+... |... -.+..+++... -+.+
T Consensus 17 ~NiRNmSVIAHVDHGKSTLTDsLV~kAgIis~akaGe~Rf~DtRkDEQeR~iTIKStAISl~~e~~~~dl~~~k~~~d~~ 96 (842)
T KOG0469|consen 17 KNIRNMSVIAHVDHGKSTLTDSLVQKAGIISAAKAGETRFTDTRKDEQERGITIKSTAISLFFEMSDDDLKFIKQEGDGN 96 (842)
T ss_pred cccccceEEEEecCCcchhhHHHHHhhceeeecccCCccccccccchhhcceEeeeeeeeehhhhhHhHHHHhcCCCCCc
Confidence 344578889999999999999998321 1100 00111111111 1123
Q ss_pred CEEEEEEecCCchhhHHhHHHHhcCCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcc
Q 030429 56 NVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKS 127 (177)
Q Consensus 56 ~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~ 127 (177)
+.-++++|.||+-+|.+..-.+++-.|++++|+|.-+.--.+. ...+...+.. +-+| ++++||.|..
T Consensus 97 ~FLiNLIDSPGHVDFSSEVTAALRVTDGALVVVDcv~GvCVQT-ETVLrQA~~E---RIkP-vlv~NK~DRA 163 (842)
T KOG0469|consen 97 GFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQT-ETVLRQAIAE---RIKP-VLVMNKMDRA 163 (842)
T ss_pred ceeEEeccCCCcccchhhhhheeEeccCcEEEEEccCceEech-HHHHHHHHHh---hccc-eEEeehhhHH
Confidence 5678999999999999999999999999999999855321211 1222222222 2345 4569999953
|
|
| >PF13555 AAA_29: P-loop containing region of AAA domain | Back alignment and domain information |
|---|
Probab=97.87 E-value=1.6e-05 Score=43.91 Aligned_cols=20 Identities=25% Similarity=0.478 Sum_probs=18.3
Q ss_pred EEEEEcCCCCCHHHHHHHHh
Q 030429 14 ELSLIGLQNAGKTSLVNTIA 33 (177)
Q Consensus 14 ~i~i~G~~~~GKSsli~~l~ 33 (177)
..+|.|+.|+|||||+.++.
T Consensus 25 ~tli~G~nGsGKSTllDAi~ 44 (62)
T PF13555_consen 25 VTLITGPNGSGKSTLLDAIQ 44 (62)
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 58999999999999999886
|
|
| >PRK08118 topology modulation protein; Reviewed | Back alignment and domain information |
|---|
Probab=97.86 E-value=1.4e-05 Score=53.78 Aligned_cols=21 Identities=29% Similarity=0.566 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 030429 14 ELSLIGLQNAGKTSLVNTIAT 34 (177)
Q Consensus 14 ~i~i~G~~~~GKSsli~~l~~ 34 (177)
+|+|+|++|||||||.+.+..
T Consensus 3 rI~I~G~~GsGKSTlak~L~~ 23 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGE 23 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 799999999999999999973
|
|
| >cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion | Back alignment and domain information |
|---|
Probab=97.85 E-value=1.6e-05 Score=53.83 Aligned_cols=31 Identities=19% Similarity=0.332 Sum_probs=28.1
Q ss_pred eeecccccceeEEEEEcCCCCCHHHHHHHHh
Q 030429 3 LHISLFFKQEMELSLIGLQNAGKTSLVNTIA 33 (177)
Q Consensus 3 ~~~~~~~~~~~~i~i~G~~~~GKSsli~~l~ 33 (177)
.+.++..+..-.++++|+.|||||||++.+.
T Consensus 12 ~~isl~i~~G~~~~l~G~nG~GKSTLl~~il 42 (176)
T cd03238 12 QNLDVSIPLNVLVVVTGVSGSGKSTLVNEGL 42 (176)
T ss_pred cceEEEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence 4677888899999999999999999999886
|
Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases. |
| >KOG1533 consensus Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.85 E-value=3.2e-05 Score=53.92 Aligned_cols=21 Identities=24% Similarity=0.457 Sum_probs=17.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHh
Q 030429 13 MELSLIGLQNAGKTSLVNTIA 33 (177)
Q Consensus 13 ~~i~i~G~~~~GKSsli~~l~ 33 (177)
+-.+++|||||||||.++-..
T Consensus 3 fgqvVIGPPgSGKsTYc~g~~ 23 (290)
T KOG1533|consen 3 FGQVVIGPPGSGKSTYCNGMS 23 (290)
T ss_pred cceEEEcCCCCCccchhhhHH
Confidence 345899999999999987665
|
|
| >PRK07261 topology modulation protein; Provisional | Back alignment and domain information |
|---|
Probab=97.85 E-value=1.5e-05 Score=53.81 Aligned_cols=20 Identities=25% Similarity=0.690 Sum_probs=19.1
Q ss_pred EEEEEcCCCCCHHHHHHHHh
Q 030429 14 ELSLIGLQNAGKTSLVNTIA 33 (177)
Q Consensus 14 ~i~i~G~~~~GKSsli~~l~ 33 (177)
+|+|+|++|||||||.+.+.
T Consensus 2 ri~i~G~~GsGKSTla~~l~ 21 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLS 21 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHH
Confidence 79999999999999999986
|
|
| >COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=97.84 E-value=4.4e-05 Score=55.99 Aligned_cols=111 Identities=19% Similarity=0.270 Sum_probs=62.8
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcC----C----------CCCC-------CCCccceeEEE---------E-------
Q 030429 10 KQEMELSLIGLQNAGKTSLVNTIATG----G----------YSED-------MIPTVGFNMRK---------V------- 52 (177)
Q Consensus 10 ~~~~~i~i~G~~~~GKSsli~~l~~~----~----------~~~~-------~~~t~~~~~~~---------~------- 52 (177)
.++.-|+++|-.|+||||-+-.+... + |... .....+..... +
T Consensus 137 ~~p~Vil~vGVNG~GKTTTIaKLA~~l~~~g~~VllaA~DTFRAaAiEQL~~w~er~gv~vI~~~~G~DpAaVafDAi~~ 216 (340)
T COG0552 137 KKPFVILFVGVNGVGKTTTIAKLAKYLKQQGKSVLLAAGDTFRAAAIEQLEVWGERLGVPVISGKEGADPAAVAFDAIQA 216 (340)
T ss_pred CCcEEEEEEecCCCchHhHHHHHHHHHHHCCCeEEEEecchHHHHHHHHHHHHHHHhCCeEEccCCCCCcHHHHHHHHHH
Confidence 45889999999999999999888720 0 0000 00011111111 0
Q ss_pred -EeCCEEEEEEecCCchhhH-HhH------HHHhcCC-----CEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEE
Q 030429 53 -TKGNVTIKLWDLGGQRRFR-TMW------ERYCRGV-----SAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLV 119 (177)
Q Consensus 53 -~~~~~~~~~~D~~g~~~~~-~~~------~~~~~~~-----d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii 119 (177)
...++++.++||+|-.... .++ ...+... +-+++++|++....--+..+.+.+.... -=+
T Consensus 217 Akar~~DvvliDTAGRLhnk~nLM~EL~KI~rV~~k~~~~ap~e~llvlDAttGqnal~QAk~F~eav~l-------~Gi 289 (340)
T COG0552 217 AKARGIDVVLIDTAGRLHNKKNLMDELKKIVRVIKKDDPDAPHEILLVLDATTGQNALSQAKIFNEAVGL-------DGI 289 (340)
T ss_pred HHHcCCCEEEEeCcccccCchhHHHHHHHHHHHhccccCCCCceEEEEEEcccChhHHHHHHHHHHhcCC-------ceE
Confidence 1246889999999933221 111 1223333 3488999998754444445555555333 136
Q ss_pred EeeCCCcc
Q 030429 120 LGNKIDKS 127 (177)
Q Consensus 120 v~nK~D~~ 127 (177)
++||+|..
T Consensus 290 IlTKlDgt 297 (340)
T COG0552 290 ILTKLDGT 297 (340)
T ss_pred EEEecccC
Confidence 79999954
|
|
| >COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.83 E-value=1.8e-05 Score=52.63 Aligned_cols=32 Identities=25% Similarity=0.390 Sum_probs=29.1
Q ss_pred ceeecccccceeEEEEEcCCCCCHHHHHHHHh
Q 030429 2 YLHISLFFKQEMELSLIGLQNAGKTSLVNTIA 33 (177)
Q Consensus 2 ~~~~~~~~~~~~~i~i~G~~~~GKSsli~~l~ 33 (177)
..++++.....-.++++|++|||||||++.++
T Consensus 19 l~~isl~v~~Ge~iaitGPSG~GKStllk~va 50 (223)
T COG4619 19 LNNISLSVRAGEFIAITGPSGCGKSTLLKIVA 50 (223)
T ss_pred ecceeeeecCCceEEEeCCCCccHHHHHHHHH
Confidence 35778888999999999999999999999997
|
|
| >COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=97.83 E-value=1.8e-05 Score=56.46 Aligned_cols=32 Identities=19% Similarity=0.326 Sum_probs=28.0
Q ss_pred eeecccccceeEEEEEcCCCCCHHHHHHHHhc
Q 030429 3 LHISLFFKQEMELSLIGLQNAGKTSLVNTIAT 34 (177)
Q Consensus 3 ~~~~~~~~~~~~i~i~G~~~~GKSsli~~l~~ 34 (177)
...++..+..--++++|+.|||||||++.+.+
T Consensus 19 ~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g 50 (258)
T COG1120 19 DDLSFSIPKGEITGILGPNGSGKSTLLKCLAG 50 (258)
T ss_pred ecceEEecCCcEEEEECCCCCCHHHHHHHHhc
Confidence 45677788888899999999999999999984
|
|
| >COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.83 E-value=1.7e-05 Score=53.88 Aligned_cols=23 Identities=30% Similarity=0.579 Sum_probs=20.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcC
Q 030429 13 MELSLIGLQNAGKTSLVNTIATG 35 (177)
Q Consensus 13 ~~i~i~G~~~~GKSsli~~l~~~ 35 (177)
.||+|+|+|||||||+..++...
T Consensus 1 ~riiilG~pGaGK~T~A~~La~~ 23 (178)
T COG0563 1 MRILILGPPGAGKSTLAKKLAKK 23 (178)
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 37999999999999999999844
|
|
| >PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated | Back alignment and domain information |
|---|
Probab=97.82 E-value=0.00017 Score=55.57 Aligned_cols=110 Identities=15% Similarity=0.144 Sum_probs=58.8
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcC------CCC-----CCCCC------------ccceeEEEE-----------EeCCE
Q 030429 12 EMELSLIGLQNAGKTSLVNTIATG------GYS-----EDMIP------------TVGFNMRKV-----------TKGNV 57 (177)
Q Consensus 12 ~~~i~i~G~~~~GKSsli~~l~~~------~~~-----~~~~~------------t~~~~~~~~-----------~~~~~ 57 (177)
.-.++++|++||||||++-.|... ... .+... ..++..... ...++
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~~r~~a~eqL~~~a~~~~vp~~~~~~~~~l~~~l~~~~~~ 300 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDTYRIGAVEQLKTYAKIMGIPVEVVYDPKELAKALEQLRDC 300 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCccHHHHHHHHHHHHHHhCCceEccCCHHhHHHHHHHhCCC
Confidence 347899999999999988777521 110 00000 011111110 12357
Q ss_pred EEEEEecCCchhhH----HhHHHHhc---CCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccc
Q 030429 58 TIKLWDLGGQRRFR----TMWERYCR---GVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSE 128 (177)
Q Consensus 58 ~~~~~D~~g~~~~~----~~~~~~~~---~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~ 128 (177)
++.++||||..... ..+..++. ...-+.+|++++.. ...+...+..+... . +--+++||.|-..
T Consensus 301 DlVlIDt~G~~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~~~--~~~l~~~~~~f~~~----~-~~~vI~TKlDet~ 371 (424)
T PRK05703 301 DVILIDTAGRSQRDKRLIEELKALIEFSGEPIDVYLVLSATTK--YEDLKDIYKHFSRL----P-LDGLIFTKLDETS 371 (424)
T ss_pred CEEEEeCCCCCCCCHHHHHHHHHHHhccCCCCeEEEEEECCCC--HHHHHHHHHHhCCC----C-CCEEEEecccccc
Confidence 88999999954332 22333333 23467788888542 33444433333111 1 2247799999754
|
|
| >PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B | Back alignment and domain information |
|---|
Probab=97.80 E-value=1.9e-05 Score=51.53 Aligned_cols=19 Identities=32% Similarity=0.566 Sum_probs=18.0
Q ss_pred EEEEcCCCCCHHHHHHHHh
Q 030429 15 LSLIGLQNAGKTSLVNTIA 33 (177)
Q Consensus 15 i~i~G~~~~GKSsli~~l~ 33 (177)
|+++|+||||||||++.+.
T Consensus 2 ii~~G~pgsGKSt~a~~l~ 20 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLA 20 (143)
T ss_dssp EEEEESTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 6899999999999999997
|
... |
| >cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Probab=97.80 E-value=1.9e-05 Score=55.08 Aligned_cols=32 Identities=34% Similarity=0.387 Sum_probs=27.0
Q ss_pred eeecccccceeEEEEEcCCCCCHHHHHHHHhcC
Q 030429 3 LHISLFFKQEMELSLIGLQNAGKTSLVNTIATG 35 (177)
Q Consensus 3 ~~~~~~~~~~~~i~i~G~~~~GKSsli~~l~~~ 35 (177)
.+.++..+.. .++++|+.|+|||||++.+.+-
T Consensus 17 ~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl 48 (211)
T cd03264 17 DGVSLTLGPG-MYGLLGPNGAGKTTLMRILATL 48 (211)
T ss_pred cceeEEEcCC-cEEEECCCCCCHHHHHHHHhCC
Confidence 3456777778 9999999999999999999843
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.0006 Score=44.39 Aligned_cols=105 Identities=12% Similarity=0.084 Sum_probs=58.0
Q ss_pred EEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEE-EEEeCCEEEEEEecCCchhhHHhHHHHhcCCCEEEEEEeCCCCCC
Q 030429 17 LIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMR-KVTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAADRDS 95 (177)
Q Consensus 17 i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~~ 95 (177)
.-|.+|+||||+.-.+...-.. ...++.-++.. ....-.+++.++|+|+... ......+..+|.++++.+.+. .+
T Consensus 5 ~~~kgg~gkt~~~~~~a~~~~~-~~~~~~~vd~D~~~~~~~yd~VIiD~p~~~~--~~~~~~l~~aD~vviv~~~~~-~s 80 (139)
T cd02038 5 TSGKGGVGKTNISANLALALAK-LGKRVLLLDADLGLANLDYDYIIIDTGAGIS--DNVLDFFLAADEVIVVTTPEP-TS 80 (139)
T ss_pred EcCCCCCcHHHHHHHHHHHHHH-CCCcEEEEECCCCCCCCCCCEEEEECCCCCC--HHHHHHHHhCCeEEEEcCCCh-hH
Confidence 4468999999997776521000 00000000000 0000017889999997433 223456888999999999743 33
Q ss_pred HHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcc
Q 030429 96 VPIARSELHELLMKPSLSGIPLLVLGNKIDKS 127 (177)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~ 127 (177)
.......+..+.... ...++.+|+|+++..
T Consensus 81 ~~~~~~~l~~l~~~~--~~~~~~lVvN~~~~~ 110 (139)
T cd02038 81 ITDAYALIKKLAKQL--RVLNFRVVVNRAESP 110 (139)
T ss_pred HHHHHHHHHHHHHhc--CCCCEEEEEeCCCCH
Confidence 444444444443221 345778999999743
|
It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity. |
| >cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis | Back alignment and domain information |
|---|
Probab=97.78 E-value=3.2e-05 Score=47.73 Aligned_cols=30 Identities=17% Similarity=0.176 Sum_probs=25.3
Q ss_pred eecccccceeEEEEEcCCCCCHHHHHHHHh
Q 030429 4 HISLFFKQEMELSLIGLQNAGKTSLVNTIA 33 (177)
Q Consensus 4 ~~~~~~~~~~~i~i~G~~~~GKSsli~~l~ 33 (177)
..++..+..-.++++|++|||||||++.+.
T Consensus 7 ~vsl~i~~ge~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 7 GVLVDVYGKVGVLITGDSGIGKTELALELI 36 (107)
T ss_pred eeEEEEcCCEEEEEEcCCCCCHHHHHHHhh
Confidence 455666777788999999999999999985
|
It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural |
| >cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.0004 Score=44.85 Aligned_cols=25 Identities=36% Similarity=0.454 Sum_probs=21.6
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhcC
Q 030429 11 QEMELSLIGLQNAGKTSLVNTIATG 35 (177)
Q Consensus 11 ~~~~i~i~G~~~~GKSsli~~l~~~ 35 (177)
..-.+++.|++|+|||++++.+...
T Consensus 18 ~~~~v~i~G~~G~GKT~l~~~i~~~ 42 (151)
T cd00009 18 PPKNLLLYGPPGTGKTTLARAIANE 42 (151)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHH
Confidence 3557999999999999999999844
|
The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases. |
| >cd04178 Nucleostemin_like Nucleostemin-like | Back alignment and domain information |
|---|
Probab=97.77 E-value=3.6e-05 Score=51.98 Aligned_cols=56 Identities=23% Similarity=0.234 Sum_probs=34.4
Q ss_pred CEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccCHHHHHHHhC
Q 030429 82 SAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLG 140 (177)
Q Consensus 82 d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~ 140 (177)
|++++|+|+.++.+..+ ..+..... ....+.|+++|+||+|+.+.+...++.+.+.
T Consensus 1 DvVl~VvDar~p~~~~~--~~i~~~~~-l~~~~kp~IlVlNK~DL~~~~~l~~~~~~~~ 56 (172)
T cd04178 1 DVILEVLDARDPLGCRC--PQVEEAVL-QAGGNKKLVLVLNKIDLVPKENVEKWLKYLR 56 (172)
T ss_pred CEEEEEEECCCCCCCCC--HHHHHHHH-hccCCCCEEEEEehhhcCCHHHHHHHHHHHH
Confidence 78999999977633221 12222211 1113589999999999987655555555543
|
Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the |
| >PF05729 NACHT: NACHT domain | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.00034 Score=46.46 Aligned_cols=20 Identities=30% Similarity=0.517 Sum_probs=18.4
Q ss_pred EEEEcCCCCCHHHHHHHHhc
Q 030429 15 LSLIGLQNAGKTSLVNTIAT 34 (177)
Q Consensus 15 i~i~G~~~~GKSsli~~l~~ 34 (177)
++|.|++|+||||++.+++.
T Consensus 3 l~I~G~~G~GKStll~~~~~ 22 (166)
T PF05729_consen 3 LWISGEPGSGKSTLLRKLAQ 22 (166)
T ss_pred EEEECCCCCChHHHHHHHHH
Confidence 68999999999999999984
|
|
| >cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars | Back alignment and domain information |
|---|
Probab=97.74 E-value=3.3e-05 Score=43.94 Aligned_cols=20 Identities=20% Similarity=0.512 Sum_probs=18.4
Q ss_pred EEEEcCCCCCHHHHHHHHhc
Q 030429 15 LSLIGLQNAGKTSLVNTIAT 34 (177)
Q Consensus 15 i~i~G~~~~GKSsli~~l~~ 34 (177)
|+++|++||||||+.+.+..
T Consensus 2 i~i~G~~gsGKst~~~~l~~ 21 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAE 21 (69)
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 68999999999999999973
|
Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate. |
| >COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.74 E-value=3.1e-05 Score=54.32 Aligned_cols=33 Identities=24% Similarity=0.407 Sum_probs=29.5
Q ss_pred ceeecccccceeEEEEEcCCCCCHHHHHHHHhc
Q 030429 2 YLHISLFFKQEMELSLIGLQNAGKTSLVNTIAT 34 (177)
Q Consensus 2 ~~~~~~~~~~~~~i~i~G~~~~GKSsli~~l~~ 34 (177)
....++.....-.++++|++|||||||.+.+.+
T Consensus 23 l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~G 55 (252)
T COG1124 23 LNNVSLEIERGETLGIVGESGSGKSTLARLLAG 55 (252)
T ss_pred hcceeEEecCCCEEEEEcCCCCCHHHHHHHHhc
Confidence 356788889999999999999999999999984
|
|
| >COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.0013 Score=44.11 Aligned_cols=155 Identities=17% Similarity=0.149 Sum_probs=88.7
Q ss_pred ccccceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEeCCEEEEEE-ecCCchhhHHhH-------HHHh
Q 030429 7 LFFKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTKGNVTIKLW-DLGGQRRFRTMW-------ERYC 78 (177)
Q Consensus 7 ~~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~-D~~g~~~~~~~~-------~~~~ 78 (177)
+...+.+-|-+.|.+||||||+.+.+-.. ....+...+-.+.++++-.+. |.+-++.-+..+ ...+
T Consensus 18 ~~~~~~~viW~TGLSGsGKSTiA~ale~~------L~~~G~~~y~LDGDnvR~gL~~dLgFs~edR~eniRRvaevAkll 91 (197)
T COG0529 18 LKGQKGAVIWFTGLSGSGKSTIANALEEK------LFAKGYHVYLLDGDNVRHGLNRDLGFSREDRIENIRRVAEVAKLL 91 (197)
T ss_pred HhCCCCeEEEeecCCCCCHHHHHHHHHHH------HHHcCCeEEEecChhHhhcccCCCCCChHHHHHHHHHHHHHHHHH
Confidence 34566788999999999999999998622 233345666677777776666 666644333222 2245
Q ss_pred cCCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccc--ccCHHHHHHHhCcccc------c----C
Q 030429 79 RGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSE--ALSKQALVDQLGLESI------T----D 146 (177)
Q Consensus 79 ~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~--~~~~~~~~~~~~~~~~------~----~ 146 (177)
.++.++++|-=+|- +...++....++.. -+++=|.-.+++.. ..++.-+.++...-.. . .
T Consensus 92 ~daG~iviva~ISP---~r~~R~~aR~~~~~-----~~FiEVyV~~pl~vce~RDpKGLYkKAr~GeI~~fTGid~pYE~ 163 (197)
T COG0529 92 ADAGLIVIVAFISP---YREDRQMARELLGE-----GEFIEVYVDTPLEVCERRDPKGLYKKARAGEIKNFTGIDSPYEA 163 (197)
T ss_pred HHCCeEEEEEeeCc---cHHHHHHHHHHhCc-----CceEEEEeCCCHHHHHhcCchHHHHHHHcCCCCCCcCCCCCCCC
Confidence 56677666655432 56666655555443 26777777777643 2333334433221110 0 1
Q ss_pred CceeEEEeeecCCCChHHHHHHHHHHhhhc
Q 030429 147 REVCCYMISCKDSINIDAVIDWLIKHSKTA 176 (177)
Q Consensus 147 ~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~ 176 (177)
+..|-+-+. .+...+++..+.|.+.+...
T Consensus 164 P~~Pel~l~-t~~~~vee~v~~i~~~l~~~ 192 (197)
T COG0529 164 PENPELHLD-TDRNSVEECVEQILDLLKER 192 (197)
T ss_pred CCCCeeEec-cccCCHHHHHHHHHHHHHhc
Confidence 111222222 12356888888888887653
|
|
| >cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE) | Back alignment and domain information |
|---|
Probab=97.72 E-value=3.7e-05 Score=53.93 Aligned_cols=32 Identities=22% Similarity=0.381 Sum_probs=27.5
Q ss_pred eecccccceeEEEEEcCCCCCHHHHHHHHhcC
Q 030429 4 HISLFFKQEMELSLIGLQNAGKTSLVNTIATG 35 (177)
Q Consensus 4 ~~~~~~~~~~~i~i~G~~~~GKSsli~~l~~~ 35 (177)
..++..+..-.++++|+.|+|||||++.+.+-
T Consensus 22 ~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl 53 (218)
T cd03255 22 GVSLSIEKGEFVAIVGPSGSGKSTLLNILGGL 53 (218)
T ss_pred eeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCC
Confidence 45677778888999999999999999999853
|
They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. |
| >TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein | Back alignment and domain information |
|---|
Probab=97.72 E-value=3.6e-05 Score=53.88 Aligned_cols=32 Identities=19% Similarity=0.332 Sum_probs=27.5
Q ss_pred eecccccceeEEEEEcCCCCCHHHHHHHHhcC
Q 030429 4 HISLFFKQEMELSLIGLQNAGKTSLVNTIATG 35 (177)
Q Consensus 4 ~~~~~~~~~~~i~i~G~~~~GKSsli~~l~~~ 35 (177)
..++..+..-.++++|+.|+|||||++.+.+-
T Consensus 21 ~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 52 (216)
T TIGR00960 21 NLNFHITKGEMVFLVGHSGAGKSTFLKLILGI 52 (216)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 45667777888999999999999999999853
|
|
| >PF13521 AAA_28: AAA domain; PDB: 1LW7_A | Back alignment and domain information |
|---|
Probab=97.72 E-value=2.1e-05 Score=52.61 Aligned_cols=22 Identities=27% Similarity=0.533 Sum_probs=17.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 030429 14 ELSLIGLQNAGKTSLVNTIATG 35 (177)
Q Consensus 14 ~i~i~G~~~~GKSsli~~l~~~ 35 (177)
||+|+|.+++|||||++.|...
T Consensus 1 rI~i~G~~stGKTTL~~~L~~~ 22 (163)
T PF13521_consen 1 RIVITGGPSTGKTTLIEALAAR 22 (163)
T ss_dssp -EEEE--TTSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHc
Confidence 7999999999999999999843
|
|
| >PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency [] | Back alignment and domain information |
|---|
Probab=97.72 E-value=3.3e-05 Score=51.97 Aligned_cols=20 Identities=25% Similarity=0.501 Sum_probs=18.0
Q ss_pred EEEEEcCCCCCHHHHHHHHh
Q 030429 14 ELSLIGLQNAGKTSLVNTIA 33 (177)
Q Consensus 14 ~i~i~G~~~~GKSsli~~l~ 33 (177)
||.+.|++|+|||||+++++
T Consensus 1 ~i~iTG~pG~GKTTll~k~i 20 (168)
T PF03266_consen 1 HIFITGPPGVGKTTLLKKVI 20 (168)
T ss_dssp EEEEES-TTSSHHHHHHHHH
T ss_pred CEEEECcCCCCHHHHHHHHH
Confidence 68999999999999999987
|
It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A. |
| >COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=97.71 E-value=3.4e-05 Score=54.14 Aligned_cols=32 Identities=31% Similarity=0.442 Sum_probs=29.3
Q ss_pred ceeecccccceeEEEEEcCCCCCHHHHHHHHh
Q 030429 2 YLHISLFFKQEMELSLIGLQNAGKTSLVNTIA 33 (177)
Q Consensus 2 ~~~~~~~~~~~~~i~i~G~~~~GKSsli~~l~ 33 (177)
.+++++...+.-+|+++|.+|+|||||++-+.
T Consensus 43 L~disf~i~~Ge~vGiiG~NGaGKSTLlklia 74 (249)
T COG1134 43 LKDISFEIYKGERVGIIGHNGAGKSTLLKLIA 74 (249)
T ss_pred ecCceEEEeCCCEEEEECCCCCcHHHHHHHHh
Confidence 35788899999999999999999999999997
|
|
| >cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules | Back alignment and domain information |
|---|
Probab=97.71 E-value=3.8e-05 Score=54.49 Aligned_cols=33 Identities=24% Similarity=0.330 Sum_probs=28.4
Q ss_pred eeecccccceeEEEEEcCCCCCHHHHHHHHhcC
Q 030429 3 LHISLFFKQEMELSLIGLQNAGKTSLVNTIATG 35 (177)
Q Consensus 3 ~~~~~~~~~~~~i~i~G~~~~GKSsli~~l~~~ 35 (177)
...++..+..-.++++|+.|+|||||++.+.+-
T Consensus 17 ~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~ 49 (235)
T cd03261 17 KGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGL 49 (235)
T ss_pred eeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 356777888889999999999999999999843
|
The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids | Back alignment and domain information |
|---|
Probab=97.71 E-value=4.1e-05 Score=53.84 Aligned_cols=33 Identities=33% Similarity=0.422 Sum_probs=28.2
Q ss_pred eeecccccceeEEEEEcCCCCCHHHHHHHHhcC
Q 030429 3 LHISLFFKQEMELSLIGLQNAGKTSLVNTIATG 35 (177)
Q Consensus 3 ~~~~~~~~~~~~i~i~G~~~~GKSsli~~l~~~ 35 (177)
.+.++..+..-.++++|+.|||||||++.+.+-
T Consensus 17 ~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 49 (222)
T cd03224 17 FGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGL 49 (222)
T ss_pred eeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCC
Confidence 356677788889999999999999999999743
|
The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. |
| >cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=97.71 E-value=3.9e-05 Score=53.28 Aligned_cols=33 Identities=30% Similarity=0.286 Sum_probs=28.2
Q ss_pred eeecccccceeEEEEEcCCCCCHHHHHHHHhcC
Q 030429 3 LHISLFFKQEMELSLIGLQNAGKTSLVNTIATG 35 (177)
Q Consensus 3 ~~~~~~~~~~~~i~i~G~~~~GKSsli~~l~~~ 35 (177)
...++..+..-.++++|+.|||||||++.+.+-
T Consensus 17 ~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 49 (205)
T cd03226 17 DDLSLDLYAGEIIALTGKNGAGKTTLAKILAGL 49 (205)
T ss_pred eeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 345677778889999999999999999999853
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >TIGR02673 FtsE cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Probab=97.71 E-value=3.7e-05 Score=53.75 Aligned_cols=33 Identities=30% Similarity=0.377 Sum_probs=28.0
Q ss_pred eeecccccceeEEEEEcCCCCCHHHHHHHHhcC
Q 030429 3 LHISLFFKQEMELSLIGLQNAGKTSLVNTIATG 35 (177)
Q Consensus 3 ~~~~~~~~~~~~i~i~G~~~~GKSsli~~l~~~ 35 (177)
...++..+..-.++++|+.|+|||||++.+.+-
T Consensus 19 ~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl 51 (214)
T TIGR02673 19 HDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGA 51 (214)
T ss_pred cceeEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 345677778888999999999999999999853
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein. |
| >COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.70 E-value=3.6e-05 Score=57.04 Aligned_cols=31 Identities=26% Similarity=0.398 Sum_probs=26.7
Q ss_pred eecccccceeEEEEEcCCCCCHHHHHHHHhc
Q 030429 4 HISLFFKQEMELSLIGLQNAGKTSLVNTIAT 34 (177)
Q Consensus 4 ~~~~~~~~~~~i~i~G~~~~GKSsli~~l~~ 34 (177)
..++..+..--++++||+|||||||++.+.+
T Consensus 21 ~i~l~i~~Gef~vllGPSGcGKSTlLr~IAG 51 (338)
T COG3839 21 DVNLDIEDGEFVVLLGPSGCGKSTLLRMIAG 51 (338)
T ss_pred cceEEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 4567777777789999999999999999984
|
|
| >TIGR01166 cbiO cobalt transport protein ATP-binding subunit | Back alignment and domain information |
|---|
Probab=97.70 E-value=4e-05 Score=52.62 Aligned_cols=33 Identities=21% Similarity=0.291 Sum_probs=28.2
Q ss_pred eeecccccceeEEEEEcCCCCCHHHHHHHHhcC
Q 030429 3 LHISLFFKQEMELSLIGLQNAGKTSLVNTIATG 35 (177)
Q Consensus 3 ~~~~~~~~~~~~i~i~G~~~~GKSsli~~l~~~ 35 (177)
...++..+..-.++++|+.|+|||||++.+.+-
T Consensus 9 ~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~ 41 (190)
T TIGR01166 9 KGLNFAAERGEVLALLGANGAGKSTLLLHLNGL 41 (190)
T ss_pred cceeEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 356777788888999999999999999999743
|
This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux. |
| >cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment | Back alignment and domain information |
|---|
Probab=97.70 E-value=4.5e-05 Score=51.83 Aligned_cols=33 Identities=27% Similarity=0.356 Sum_probs=28.2
Q ss_pred eeecccccceeEEEEEcCCCCCHHHHHHHHhcC
Q 030429 3 LHISLFFKQEMELSLIGLQNAGKTSLVNTIATG 35 (177)
Q Consensus 3 ~~~~~~~~~~~~i~i~G~~~~GKSsli~~l~~~ 35 (177)
...++..+..-.++++|+.|+|||||++.+.+-
T Consensus 17 ~~i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~ 49 (178)
T cd03229 17 NDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGL 49 (178)
T ss_pred eeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 345677788889999999999999999999843
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group | Back alignment and domain information |
|---|
Probab=97.70 E-value=4e-05 Score=53.24 Aligned_cols=33 Identities=24% Similarity=0.359 Sum_probs=28.1
Q ss_pred eeecccccceeEEEEEcCCCCCHHHHHHHHhcC
Q 030429 3 LHISLFFKQEMELSLIGLQNAGKTSLVNTIATG 35 (177)
Q Consensus 3 ~~~~~~~~~~~~i~i~G~~~~GKSsli~~l~~~ 35 (177)
...++..+..-.++++|++|+|||||++.+.+-
T Consensus 15 ~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~ 47 (206)
T TIGR03608 15 DDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLL 47 (206)
T ss_pred eceEEEEeCCcEEEEECCCCCCHHHHHHHHhcC
Confidence 345677778888999999999999999999853
|
A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins. |
| >PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional | Back alignment and domain information |
|---|
Probab=97.69 E-value=4.3e-05 Score=53.48 Aligned_cols=33 Identities=12% Similarity=0.206 Sum_probs=29.2
Q ss_pred eeecccccceeEEEEEcCCCCCHHHHHHHHhcC
Q 030429 3 LHISLFFKQEMELSLIGLQNAGKTSLVNTIATG 35 (177)
Q Consensus 3 ~~~~~~~~~~~~i~i~G~~~~GKSsli~~l~~~ 35 (177)
...++..++.-.++++|+.|+|||||++.+.+-
T Consensus 4 ~~vs~~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl 36 (213)
T PRK15177 4 DKTDFVMGYHEHIGILAAPGSGKTTLTRLLCGL 36 (213)
T ss_pred eeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 467788888999999999999999999999853
|
|
| >cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Probab=97.69 E-value=4.2e-05 Score=53.42 Aligned_cols=33 Identities=24% Similarity=0.227 Sum_probs=28.2
Q ss_pred eeecccccceeEEEEEcCCCCCHHHHHHHHhcC
Q 030429 3 LHISLFFKQEMELSLIGLQNAGKTSLVNTIATG 35 (177)
Q Consensus 3 ~~~~~~~~~~~~i~i~G~~~~GKSsli~~l~~~ 35 (177)
.+.++..+..-.++++|+.|+|||||++.+.+-
T Consensus 17 ~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~ 49 (213)
T cd03301 17 DDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGL 49 (213)
T ss_pred eceEEEEcCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 455677778888999999999999999999854
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. |
| >cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively | Back alignment and domain information |
|---|
Probab=97.69 E-value=4.1e-05 Score=53.80 Aligned_cols=32 Identities=31% Similarity=0.404 Sum_probs=27.7
Q ss_pred eecccccceeEEEEEcCCCCCHHHHHHHHhcC
Q 030429 4 HISLFFKQEMELSLIGLQNAGKTSLVNTIATG 35 (177)
Q Consensus 4 ~~~~~~~~~~~i~i~G~~~~GKSsli~~l~~~ 35 (177)
+.++..+..-.++++|+.|+|||||++.+.+-
T Consensus 22 ~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl 53 (220)
T cd03293 22 DISLSVEEGEFVALVGPSGCGKSTLLRIIAGL 53 (220)
T ss_pred ceeEEEeCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 45677778888999999999999999999854
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup | Back alignment and domain information |
|---|
Probab=97.69 E-value=4.2e-05 Score=53.46 Aligned_cols=33 Identities=33% Similarity=0.349 Sum_probs=28.2
Q ss_pred eeecccccceeEEEEEcCCCCCHHHHHHHHhcC
Q 030429 3 LHISLFFKQEMELSLIGLQNAGKTSLVNTIATG 35 (177)
Q Consensus 3 ~~~~~~~~~~~~i~i~G~~~~GKSsli~~l~~~ 35 (177)
.+.++..+..-.++++|+.|+|||||++.+.+-
T Consensus 17 ~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~ 49 (213)
T cd03259 17 DDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGL 49 (213)
T ss_pred cceeEEEcCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 346777788888999999999999999999853
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >KOG2485 consensus Conserved ATP/GTP binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.69 E-value=9.3e-05 Score=53.72 Aligned_cols=25 Identities=32% Similarity=0.672 Sum_probs=22.2
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhc
Q 030429 10 KQEMELSLIGLQNAGKTSLVNTIAT 34 (177)
Q Consensus 10 ~~~~~i~i~G~~~~GKSsli~~l~~ 34 (177)
+...++.++|-||+|||||+|++..
T Consensus 141 ~~~~~vmVvGvPNVGKSsLINa~r~ 165 (335)
T KOG2485|consen 141 NSEYNVMVVGVPNVGKSSLINALRN 165 (335)
T ss_pred CCceeEEEEcCCCCChHHHHHHHHH
Confidence 3678999999999999999998864
|
|
| >cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin | Back alignment and domain information |
|---|
Probab=97.69 E-value=4.1e-05 Score=53.78 Aligned_cols=33 Identities=24% Similarity=0.341 Sum_probs=28.2
Q ss_pred eeecccccceeEEEEEcCCCCCHHHHHHHHhcC
Q 030429 3 LHISLFFKQEMELSLIGLQNAGKTSLVNTIATG 35 (177)
Q Consensus 3 ~~~~~~~~~~~~i~i~G~~~~GKSsli~~l~~~ 35 (177)
...++.....-.++++|+.|+|||||++.+.+-
T Consensus 17 ~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~ 49 (220)
T cd03265 17 RGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTL 49 (220)
T ss_pred eceeEEECCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 356677778888999999999999999999853
|
In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.69 E-value=4.7e-05 Score=53.23 Aligned_cols=32 Identities=25% Similarity=0.427 Sum_probs=28.2
Q ss_pred eeecccccceeEEEEEcCCCCCHHHHHHHHhc
Q 030429 3 LHISLFFKQEMELSLIGLQNAGKTSLVNTIAT 34 (177)
Q Consensus 3 ~~~~~~~~~~~~i~i~G~~~~GKSsli~~l~~ 34 (177)
..+++..+..--|+++|+.|+|||||++.+.+
T Consensus 21 ~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lng 52 (258)
T COG3638 21 KDVNLEINQGEMVAIIGPSGAGKSTLLRSLNG 52 (258)
T ss_pred eeEeEEeCCCcEEEEECCCCCcHHHHHHHHhc
Confidence 35678888888999999999999999999974
|
|
| >cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane | Back alignment and domain information |
|---|
Probab=97.69 E-value=4.5e-05 Score=53.31 Aligned_cols=32 Identities=25% Similarity=0.317 Sum_probs=27.4
Q ss_pred eecccccceeEEEEEcCCCCCHHHHHHHHhcC
Q 030429 4 HISLFFKQEMELSLIGLQNAGKTSLVNTIATG 35 (177)
Q Consensus 4 ~~~~~~~~~~~i~i~G~~~~GKSsli~~l~~~ 35 (177)
..++..+..-.++++|+.|||||||++.+.+-
T Consensus 19 ~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~ 50 (214)
T cd03292 19 GINISISAGEFVFLVGPSGAGKSTLLKLIYKE 50 (214)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 45667777788999999999999999999853
|
The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. |
| >PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.00016 Score=48.68 Aligned_cols=23 Identities=22% Similarity=0.332 Sum_probs=20.3
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhc
Q 030429 12 EMELSLIGLQNAGKTSLVNTIAT 34 (177)
Q Consensus 12 ~~~i~i~G~~~~GKSsli~~l~~ 34 (177)
..-+.|+|.+|||||||++++..
T Consensus 6 ~~ii~ivG~sgsGKTTLi~~li~ 28 (173)
T PRK10751 6 IPLLAIAAWSGTGKTTLLKKLIP 28 (173)
T ss_pred ceEEEEECCCCChHHHHHHHHHH
Confidence 44689999999999999999983
|
|
| >cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos) | Back alignment and domain information |
|---|
Probab=97.68 E-value=4.9e-05 Score=50.90 Aligned_cols=33 Identities=24% Similarity=0.315 Sum_probs=28.5
Q ss_pred eeecccccceeEEEEEcCCCCCHHHHHHHHhcC
Q 030429 3 LHISLFFKQEMELSLIGLQNAGKTSLVNTIATG 35 (177)
Q Consensus 3 ~~~~~~~~~~~~i~i~G~~~~GKSsli~~l~~~ 35 (177)
.+.++..+..-.++++|+.|+|||||++.+.+-
T Consensus 17 ~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~ 49 (163)
T cd03216 17 DGVSLSVRRGEVHALLGENGAGKSTLMKILSGL 49 (163)
T ss_pred eeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 356677888889999999999999999999854
|
The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. |
| >cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=97.68 E-value=4.5e-05 Score=53.21 Aligned_cols=32 Identities=25% Similarity=0.357 Sum_probs=27.4
Q ss_pred eecccccceeEEEEEcCCCCCHHHHHHHHhcC
Q 030429 4 HISLFFKQEMELSLIGLQNAGKTSLVNTIATG 35 (177)
Q Consensus 4 ~~~~~~~~~~~i~i~G~~~~GKSsli~~l~~~ 35 (177)
..++..+..-.++++|+.|+|||||++.+.+-
T Consensus 19 ~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~ 50 (211)
T cd03225 19 DISLTIKKGEFVLIVGPNGSGKSTLLRLLNGL 50 (211)
T ss_pred ceEEEEcCCcEEEEECCCCCCHHHHHHHHhcC
Confidence 45667777888999999999999999999853
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity | Back alignment and domain information |
|---|
Probab=97.68 E-value=4.9e-05 Score=53.01 Aligned_cols=33 Identities=27% Similarity=0.290 Sum_probs=28.3
Q ss_pred eeecccccceeEEEEEcCCCCCHHHHHHHHhcC
Q 030429 3 LHISLFFKQEMELSLIGLQNAGKTSLVNTIATG 35 (177)
Q Consensus 3 ~~~~~~~~~~~~i~i~G~~~~GKSsli~~l~~~ 35 (177)
...++.....-.++++|+.|||||||++.+.+.
T Consensus 17 ~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~ 49 (210)
T cd03269 17 DDISFSVEKGEIFGLLGPNGAGKTTTIRMILGI 49 (210)
T ss_pred eeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 345677778888999999999999999999854
|
In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.0002 Score=61.85 Aligned_cols=33 Identities=24% Similarity=0.367 Sum_probs=30.0
Q ss_pred eeecccccceeEEEEEcCCCCCHHHHHHHHhcC
Q 030429 3 LHISLFFKQEMELSLIGLQNAGKTSLVNTIATG 35 (177)
Q Consensus 3 ~~~~~~~~~~~~i~i~G~~~~GKSsli~~l~~~ 35 (177)
+.+++..++.-.++++|+.|||||||+.++++.
T Consensus 538 ~dIn~~i~~G~lvaVvG~vGsGKSSLL~AiLGE 570 (1381)
T KOG0054|consen 538 KDINFEIKKGQLVAVVGPVGSGKSSLLSAILGE 570 (1381)
T ss_pred cceeEEecCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 467888999999999999999999999999954
|
|
| >cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively | Back alignment and domain information |
|---|
Probab=97.67 E-value=4.4e-05 Score=53.32 Aligned_cols=32 Identities=28% Similarity=0.366 Sum_probs=27.4
Q ss_pred eecccccceeEEEEEcCCCCCHHHHHHHHhcC
Q 030429 4 HISLFFKQEMELSLIGLQNAGKTSLVNTIATG 35 (177)
Q Consensus 4 ~~~~~~~~~~~i~i~G~~~~GKSsli~~l~~~ 35 (177)
..++..+..-.++++|+.|||||||++.+.+-
T Consensus 18 ~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~ 49 (213)
T cd03262 18 GIDLTVKKGEVVVIIGPSGSGKSTLLRCINLL 49 (213)
T ss_pred CceEEECCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 45667777888999999999999999999853
|
Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM |
| >PRK11248 tauB taurine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=97.67 E-value=4.8e-05 Score=54.75 Aligned_cols=33 Identities=33% Similarity=0.378 Sum_probs=28.7
Q ss_pred eeecccccceeEEEEEcCCCCCHHHHHHHHhcC
Q 030429 3 LHISLFFKQEMELSLIGLQNAGKTSLVNTIATG 35 (177)
Q Consensus 3 ~~~~~~~~~~~~i~i~G~~~~GKSsli~~l~~~ 35 (177)
...++..+..-.++++|+.|+|||||++.+.+-
T Consensus 18 ~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 50 (255)
T PRK11248 18 EDINLTLESGELLVVLGPSGCGKTTLLNLIAGF 50 (255)
T ss_pred eeeeEEECCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 456777888889999999999999999999854
|
|
| >cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth | Back alignment and domain information |
|---|
Probab=97.66 E-value=5.4e-05 Score=49.63 Aligned_cols=32 Identities=34% Similarity=0.495 Sum_probs=27.3
Q ss_pred eecccccceeEEEEEcCCCCCHHHHHHHHhcC
Q 030429 4 HISLFFKQEMELSLIGLQNAGKTSLVNTIATG 35 (177)
Q Consensus 4 ~~~~~~~~~~~i~i~G~~~~GKSsli~~l~~~ 35 (177)
..++..+..-.++++|++|+|||||++.+.+.
T Consensus 18 ~~~~~~~~Ge~~~i~G~nGsGKStLl~~l~G~ 49 (144)
T cd03221 18 DISLTINPGDRIGLVGRNGAGKSTLLKLIAGE 49 (144)
T ss_pred eeEEEECCCCEEEEECCCCCCHHHHHHHHcCC
Confidence 45667777888999999999999999999744
|
EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions. |
| >cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds | Back alignment and domain information |
|---|
Probab=97.66 E-value=4.9e-05 Score=53.37 Aligned_cols=33 Identities=24% Similarity=0.302 Sum_probs=28.0
Q ss_pred eeecccccceeEEEEEcCCCCCHHHHHHHHhcC
Q 030429 3 LHISLFFKQEMELSLIGLQNAGKTSLVNTIATG 35 (177)
Q Consensus 3 ~~~~~~~~~~~~i~i~G~~~~GKSsli~~l~~~ 35 (177)
.+.++..+..-.++++|+.|+|||||++.+.+-
T Consensus 19 ~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 51 (220)
T cd03263 19 DDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGE 51 (220)
T ss_pred cceEEEEcCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 345677777888999999999999999999854
|
Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. |
| >cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient | Back alignment and domain information |
|---|
Probab=97.66 E-value=5.2e-05 Score=53.54 Aligned_cols=33 Identities=27% Similarity=0.295 Sum_probs=28.4
Q ss_pred eeecccccceeEEEEEcCCCCCHHHHHHHHhcC
Q 030429 3 LHISLFFKQEMELSLIGLQNAGKTSLVNTIATG 35 (177)
Q Consensus 3 ~~~~~~~~~~~~i~i~G~~~~GKSsli~~l~~~ 35 (177)
...++.....-.++++|+.|+|||||++.+.+-
T Consensus 17 ~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~ 49 (227)
T cd03260 17 KDISLDIPKGEITALIGPSGCGKSTLLRLLNRL 49 (227)
T ss_pred eeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 356677788889999999999999999999854
|
The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). |
| >cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.00049 Score=42.29 Aligned_cols=81 Identities=12% Similarity=0.071 Sum_probs=47.7
Q ss_pred EEEEc-CCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEE-eCCEEEEEEecCCchhhHHhHHHHhcCCCEEEEEEeCCC
Q 030429 15 LSLIG-LQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVT-KGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAAD 92 (177)
Q Consensus 15 i~i~G-~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~-~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~ 92 (177)
|.+.| ..|+||||+...+...- ... +....-++ ...+.+.++|+|+...... ...+..+|.++++.+.+
T Consensus 2 i~~~~~kgG~Gkst~~~~la~~~-~~~-----~~~vl~~d~d~~~d~viiD~p~~~~~~~--~~~l~~ad~viv~~~~~- 72 (104)
T cd02042 2 IAVANQKGGVGKTTTAVNLAAAL-ARR-----GKRVLLIDLDPQYDYIIIDTPPSLGLLT--RNALAAADLVLIPVQPS- 72 (104)
T ss_pred EEEEeCCCCcCHHHHHHHHHHHH-HhC-----CCcEEEEeCCCCCCEEEEeCcCCCCHHH--HHHHHHCCEEEEeccCC-
Confidence 56667 67899999987776211 111 11111111 1126788999998643332 35677799999999874
Q ss_pred CCCHHHHHHHHH
Q 030429 93 RDSVPIARSELH 104 (177)
Q Consensus 93 ~~~~~~~~~~~~ 104 (177)
..+.......+.
T Consensus 73 ~~s~~~~~~~~~ 84 (104)
T cd02042 73 PLDLDGLEKLLE 84 (104)
T ss_pred HHHHHHHHHHHH
Confidence 334444444433
|
ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition. |
| >PRK13539 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=97.65 E-value=5.3e-05 Score=52.77 Aligned_cols=33 Identities=30% Similarity=0.328 Sum_probs=28.6
Q ss_pred eeecccccceeEEEEEcCCCCCHHHHHHHHhcC
Q 030429 3 LHISLFFKQEMELSLIGLQNAGKTSLVNTIATG 35 (177)
Q Consensus 3 ~~~~~~~~~~~~i~i~G~~~~GKSsli~~l~~~ 35 (177)
.+.++..++.-.++++|+.|+|||||++.+.+.
T Consensus 19 ~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~ 51 (207)
T PRK13539 19 SGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGL 51 (207)
T ss_pred eceEEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 356777888889999999999999999999854
|
|
| >TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein | Back alignment and domain information |
|---|
Probab=97.65 E-value=5.4e-05 Score=53.19 Aligned_cols=32 Identities=19% Similarity=0.338 Sum_probs=27.5
Q ss_pred eecccccceeEEEEEcCCCCCHHHHHHHHhcC
Q 030429 4 HISLFFKQEMELSLIGLQNAGKTSLVNTIATG 35 (177)
Q Consensus 4 ~~~~~~~~~~~i~i~G~~~~GKSsli~~l~~~ 35 (177)
..++..+..-.++++|+.|+|||||++.+.+-
T Consensus 23 ~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~ 54 (221)
T TIGR02211 23 GVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGL 54 (221)
T ss_pred eeEEEEcCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 45677777888999999999999999999854
|
This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina. |
| >PRK13540 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=97.65 E-value=5.6e-05 Score=52.33 Aligned_cols=33 Identities=36% Similarity=0.360 Sum_probs=28.5
Q ss_pred eeecccccceeEEEEEcCCCCCHHHHHHHHhcC
Q 030429 3 LHISLFFKQEMELSLIGLQNAGKTSLVNTIATG 35 (177)
Q Consensus 3 ~~~~~~~~~~~~i~i~G~~~~GKSsli~~l~~~ 35 (177)
...++..++.-.++++|+.|+|||||++.+.+-
T Consensus 18 ~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~ 50 (200)
T PRK13540 18 QQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGL 50 (200)
T ss_pred eeeeEEECCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 456777888889999999999999999999853
|
|
| >TIGR00235 udk uridine kinase | Back alignment and domain information |
|---|
Probab=97.65 E-value=5.7e-05 Score=52.62 Aligned_cols=26 Identities=19% Similarity=0.256 Sum_probs=23.0
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHhc
Q 030429 9 FKQEMELSLIGLQNAGKTSLVNTIAT 34 (177)
Q Consensus 9 ~~~~~~i~i~G~~~~GKSsli~~l~~ 34 (177)
+++..-|+|+|++|||||||++.+.+
T Consensus 3 ~~~g~vi~I~G~sGsGKSTl~~~l~~ 28 (207)
T TIGR00235 3 KPKGIIIGIGGGSGSGKTTVARKIYE 28 (207)
T ss_pred CCCeEEEEEECCCCCCHHHHHHHHHH
Confidence 45677899999999999999999974
|
Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below |
| >PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=97.65 E-value=5.5e-05 Score=53.64 Aligned_cols=33 Identities=15% Similarity=0.334 Sum_probs=27.9
Q ss_pred eeecccccceeEEEEEcCCCCCHHHHHHHHhcC
Q 030429 3 LHISLFFKQEMELSLIGLQNAGKTSLVNTIATG 35 (177)
Q Consensus 3 ~~~~~~~~~~~~i~i~G~~~~GKSsli~~l~~~ 35 (177)
...++..+..-.++++|+.|+|||||++.+.+-
T Consensus 26 ~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl 58 (233)
T PRK11629 26 HNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGL 58 (233)
T ss_pred EeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcC
Confidence 345677777888999999999999999999854
|
|
| >cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity | Back alignment and domain information |
|---|
Probab=97.65 E-value=5.9e-05 Score=51.01 Aligned_cols=33 Identities=33% Similarity=0.356 Sum_probs=28.1
Q ss_pred eeecccccceeEEEEEcCCCCCHHHHHHHHhcC
Q 030429 3 LHISLFFKQEMELSLIGLQNAGKTSLVNTIATG 35 (177)
Q Consensus 3 ~~~~~~~~~~~~i~i~G~~~~GKSsli~~l~~~ 35 (177)
...++.....-.++++|+.|+|||||++.+.+-
T Consensus 17 ~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~ 49 (173)
T cd03230 17 DDISLTVEKGEIYGLLGPNGAGKTTLIKIILGL 49 (173)
T ss_pred eeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 356677778889999999999999999999853
|
In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids | Back alignment and domain information |
|---|
Probab=97.64 E-value=5.2e-05 Score=53.70 Aligned_cols=33 Identities=33% Similarity=0.290 Sum_probs=28.0
Q ss_pred eeecccccceeEEEEEcCCCCCHHHHHHHHhcC
Q 030429 3 LHISLFFKQEMELSLIGLQNAGKTSLVNTIATG 35 (177)
Q Consensus 3 ~~~~~~~~~~~~i~i~G~~~~GKSsli~~l~~~ 35 (177)
...++..+..-.++++|+.|||||||++.+.+-
T Consensus 17 ~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl 49 (232)
T cd03218 17 NGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGL 49 (232)
T ss_pred ccceeEecCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 345677778888999999999999999999853
|
The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. |
| >TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=97.64 E-value=5.2e-05 Score=54.09 Aligned_cols=32 Identities=28% Similarity=0.380 Sum_probs=27.2
Q ss_pred eecccccceeEEEEEcCCCCCHHHHHHHHhcC
Q 030429 4 HISLFFKQEMELSLIGLQNAGKTSLVNTIATG 35 (177)
Q Consensus 4 ~~~~~~~~~~~i~i~G~~~~GKSsli~~l~~~ 35 (177)
..++..+..-.++++|+.|||||||++.+.+-
T Consensus 20 ~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl 51 (243)
T TIGR02315 20 NINLNINPGEFVAIIGPSGAGKSTLLRCINRL 51 (243)
T ss_pred cceEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 45667777788999999999999999999843
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates. |
| >TIGR01978 sufC FeS assembly ATPase SufC | Back alignment and domain information |
|---|
Probab=97.64 E-value=5.3e-05 Score=54.03 Aligned_cols=33 Identities=27% Similarity=0.361 Sum_probs=28.4
Q ss_pred eeecccccceeEEEEEcCCCCCHHHHHHHHhcC
Q 030429 3 LHISLFFKQEMELSLIGLQNAGKTSLVNTIATG 35 (177)
Q Consensus 3 ~~~~~~~~~~~~i~i~G~~~~GKSsli~~l~~~ 35 (177)
...++..+..-.++++|+.|||||||++.+.+-
T Consensus 17 ~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 49 (243)
T TIGR01978 17 KGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGH 49 (243)
T ss_pred eccceEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 345677788889999999999999999999854
|
SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA. |
| >KOG0781 consensus Signal recognition particle receptor, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.00034 Score=53.68 Aligned_cols=119 Identities=19% Similarity=0.222 Sum_probs=68.0
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHh----cCCC----------CCC---------------CCCccceeEEE---------
Q 030429 10 KQEMELSLIGLQNAGKTSLVNTIA----TGGY----------SED---------------MIPTVGFNMRK--------- 51 (177)
Q Consensus 10 ~~~~~i~i~G~~~~GKSsli~~l~----~~~~----------~~~---------------~~~t~~~~~~~--------- 51 (177)
++++-|.++|-.|+||||-+-.++ +..+ ... .....++-...
T Consensus 376 krPYVi~fvGVNGVGKSTNLAKIayWLlqNkfrVLIAACDTFRsGAvEQLrtHv~rl~~l~~~~v~lfekGYgkd~a~va 455 (587)
T KOG0781|consen 376 KRPYVISFVGVNGVGKSTNLAKIAYWLLQNKFRVLIAACDTFRSGAVEQLRTHVERLSALHGTMVELFEKGYGKDAAGVA 455 (587)
T ss_pred CCCeEEEEEeecCccccchHHHHHHHHHhCCceEEEEeccchhhhHHHHHHHHHHHHHHhccchhHHHhhhcCCChHHHH
Confidence 478999999999999999887776 1111 000 00000000000
Q ss_pred ------EEeCCEEEEEEecCCchhhH-HhH---HHH--hcCCCEEEEEEeCC-CCCCHHHHHHHHHHHHcCCCCCCCcEE
Q 030429 52 ------VTKGNVTIKLWDLGGQRRFR-TMW---ERY--CRGVSAILYVVDAA-DRDSVPIARSELHELLMKPSLSGIPLL 118 (177)
Q Consensus 52 ------~~~~~~~~~~~D~~g~~~~~-~~~---~~~--~~~~d~~i~v~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i 118 (177)
-...+.++.++||+|-.... .++ ..+ ....|.+++|-.+- ..++.+.+...-..+... ..++.---
T Consensus 456 k~AI~~a~~~gfDVvLiDTAGR~~~~~~lm~~l~k~~~~~~pd~i~~vgealvg~dsv~q~~~fn~al~~~-~~~r~id~ 534 (587)
T KOG0781|consen 456 KEAIQEARNQGFDVVLIDTAGRMHNNAPLMTSLAKLIKVNKPDLILFVGEALVGNDSVDQLKKFNRALADH-STPRLIDG 534 (587)
T ss_pred HHHHHHHHhcCCCEEEEeccccccCChhHHHHHHHHHhcCCCceEEEehhhhhCcHHHHHHHHHHHHHhcC-CCccccce
Confidence 01246789999999943221 122 222 45689999998763 234566655544444333 33333345
Q ss_pred EEeeCCCcccc
Q 030429 119 VLGNKIDKSEA 129 (177)
Q Consensus 119 iv~nK~D~~~~ 129 (177)
++++|+|..+.
T Consensus 535 ~~ltk~dtv~d 545 (587)
T KOG0781|consen 535 ILLTKFDTVDD 545 (587)
T ss_pred EEEEeccchhh
Confidence 67999998774
|
|
| >cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE) | Back alignment and domain information |
|---|
Probab=97.63 E-value=5.2e-05 Score=53.48 Aligned_cols=32 Identities=28% Similarity=0.416 Sum_probs=27.8
Q ss_pred eecccccceeEEEEEcCCCCCHHHHHHHHhcC
Q 030429 4 HISLFFKQEMELSLIGLQNAGKTSLVNTIATG 35 (177)
Q Consensus 4 ~~~~~~~~~~~i~i~G~~~~GKSsli~~l~~~ 35 (177)
..++..+..-.++++|+.|+|||||++.+.+-
T Consensus 23 ~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~ 54 (228)
T cd03257 23 DVSFSIKKGETLGLVGESGSGKSTLARAILGL 54 (228)
T ss_pred CceeEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 45677778889999999999999999999853
|
The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. |
| >TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA | Back alignment and domain information |
|---|
Probab=97.63 E-value=6.4e-05 Score=51.95 Aligned_cols=33 Identities=24% Similarity=0.298 Sum_probs=28.4
Q ss_pred eeecccccceeEEEEEcCCCCCHHHHHHHHhcC
Q 030429 3 LHISLFFKQEMELSLIGLQNAGKTSLVNTIATG 35 (177)
Q Consensus 3 ~~~~~~~~~~~~i~i~G~~~~GKSsli~~l~~~ 35 (177)
...++.....-.++++|+.|+|||||++.+.+.
T Consensus 17 ~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~ 49 (198)
T TIGR01189 17 EGLSFTLNAGEALQVTGPNGIGKTTLLRILAGL 49 (198)
T ss_pred eeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 346777788889999999999999999999853
|
This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c. |
| >cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport | Back alignment and domain information |
|---|
Probab=97.63 E-value=5.6e-05 Score=53.57 Aligned_cols=32 Identities=28% Similarity=0.386 Sum_probs=27.3
Q ss_pred eecccccceeEEEEEcCCCCCHHHHHHHHhcC
Q 030429 4 HISLFFKQEMELSLIGLQNAGKTSLVNTIATG 35 (177)
Q Consensus 4 ~~~~~~~~~~~i~i~G~~~~GKSsli~~l~~~ 35 (177)
..++..+..-.++++|+.|+|||||++.+.+-
T Consensus 23 ~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~ 54 (233)
T cd03258 23 DVSLSVPKGEIFGIIGRSGAGKSTLIRCINGL 54 (233)
T ss_pred cceEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 45667777889999999999999999999843
|
Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine | Back alignment and domain information |
|---|
Probab=97.63 E-value=5.2e-05 Score=53.82 Aligned_cols=32 Identities=34% Similarity=0.371 Sum_probs=27.2
Q ss_pred eecccccceeEEEEEcCCCCCHHHHHHHHhcC
Q 030429 4 HISLFFKQEMELSLIGLQNAGKTSLVNTIATG 35 (177)
Q Consensus 4 ~~~~~~~~~~~i~i~G~~~~GKSsli~~l~~~ 35 (177)
..++..+..-.++++|+.|||||||++.+.+-
T Consensus 18 ~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl 49 (236)
T cd03219 18 DVSFSVRPGEIHGLIGPNGAGKTTLFNLISGF 49 (236)
T ss_pred CceEEecCCcEEEEECCCCCCHHHHHHHHcCC
Confidence 45677777788999999999999999999843
|
MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 177 | ||||
| 2h18_A | 193 | Structure Of Human Adp-Ribosylation Factor-Like 10b | 1e-65 | ||
| 2al7_A | 186 | Structure Of Human Adp-Ribosylation Factor-Like 10c | 2e-65 | ||
| 1zd9_A | 188 | Structure Of Human Adp-Ribosylation Factor-Like 10b | 2e-64 | ||
| 1r4a_A | 165 | Crystal Structure Of Gtp-Bound Adp-Ribosylation Fac | 3e-26 | ||
| 3rd1_A | 178 | Structure Of An Adp Ribosylation Factor From Entamo | 5e-26 | ||
| 3aq4_A | 184 | Molecular Insights Into Plant Cell Proliferation Di | 9e-26 | ||
| 4dcn_A | 166 | Crystal Structure Analysis Of The Arfaptin2 Bar Dom | 2e-25 | ||
| 2a5d_A | 175 | Structural Basis For The Activation Of Cholera Toxi | 5e-25 | ||
| 1e0s_A | 174 | Small G Protein Arf6-Gdp Length = 174 | 5e-25 | ||
| 1rrg_A | 181 | Non-Myristoylated Rat Adp-Ribosylation Factor-1 Com | 2e-24 | ||
| 1hur_A | 180 | Human Adp-Ribosylation Factor 1 Complexed With Gdp, | 2e-24 | ||
| 3lvr_E | 497 | The Crystal Structure Of Asap3 In Complex With Arf6 | 4e-24 | ||
| 2a5g_A | 175 | Cholera Toxin A1 Subunit Bound To Arf6(Q67l) Length | 5e-24 | ||
| 3o47_A | 329 | Crystal Structure Of Arfgap1-Arf1 Fusion Protein Le | 6e-24 | ||
| 2k5u_A | 181 | Solution Structure Of Myirstoylated Yeast Arf1 Prot | 7e-24 | ||
| 4fme_C | 160 | Espg-Rab1-Arf6 Complex Length = 160 | 1e-23 | ||
| 3n5c_A | 162 | Crystal Structure Of Arf6delta13 Complexed With Gdp | 1e-23 | ||
| 3lrp_A | 181 | Crystal Structure Of Plasmodium Falciparum Adp-Ribo | 1e-23 | ||
| 1mr3_F | 181 | Saccharomyces Cerevisiae Adp-Ribosylation Factor 2 | 2e-23 | ||
| 2w83_A | 165 | Crystal Structure Of The Arf6 Gtpase In Complex Wit | 3e-23 | ||
| 3vhx_A | 172 | The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesi | 3e-23 | ||
| 3doe_A | 192 | Complex Of Arl2 And Bart, Crystal Form 1 Length = 1 | 4e-23 | ||
| 1z6x_A | 180 | Structure Of Human Adp-Ribosylation Factor 4 Length | 7e-23 | ||
| 2h57_A | 190 | Crystal Structure Of Human Adp-Ribosylation Factor- | 7e-23 | ||
| 2ksq_A | 181 | The Myristoylated Yeast Arf1 In A Gtp And Bicelle B | 1e-22 | ||
| 2b6h_A | 192 | Structure Of Human Adp-Ribosylation Factor 5 Length | 3e-22 | ||
| 3pcr_B | 162 | Structure Of Espg-Arf6 Complex Length = 162 | 3e-22 | ||
| 1re0_A | 164 | Structure Of Arf1-Gdp Bound To Sec7 Domain Complexe | 4e-22 | ||
| 3tjz_A | 164 | Crystal Structure Of Arf1 Bound To The GammaZETA-Co | 5e-22 | ||
| 1moz_A | 183 | Adp-Ribosylation Factor-Like 1 (Arl1) From Saccharo | 1e-21 | ||
| 1ksh_A | 186 | Complex Of Arl2 And Pde Delta, Crystal Form 2 (Nati | 1e-21 | ||
| 1ksg_A | 186 | Complex Of Arl2 And Pde Delta, Crystal Form 1 Lengt | 3e-21 | ||
| 1j2j_A | 166 | Crystal Structure Of Gga1 Gat N-terminal Region In | 5e-21 | ||
| 1upt_A | 171 | Structure Of A Complex Of The Golgin-245 Grip Domai | 7e-21 | ||
| 2x77_A | 189 | Crystal Structure Of Leishmania Major Adp Ribosylat | 2e-19 | ||
| 4gok_B | 169 | The Crystal Structure Of Arl2gppnhp In Complex With | 2e-19 | ||
| 1z6y_A | 179 | Structure Of Human Adp-Ribosylation Factor-Like 5 L | 2e-19 | ||
| 1zj6_A | 187 | Crystal Structure Of Human Arl5 Length = 187 | 3e-19 | ||
| 1ksj_A | 186 | Complex Of Arl2 And Pde Delta, Crystal Form 2 (Seme | 7e-19 | ||
| 1fzq_A | 181 | Crystal Structure Of Murine Arl3-Gdp Length = 181 | 1e-18 | ||
| 4goj_A | 189 | The Crystal Structure Of Full Length Arl3gppnhp In | 1e-18 | ||
| 1f6b_A | 198 | Crystal Structure Of Sar1-Gdp Complex Length = 198 | 1e-18 | ||
| 2gao_A | 208 | Crystal Structure Of Human Sar1a In Complex With Gd | 1e-18 | ||
| 2fmx_A | 195 | An Open Conformation Of Switch I Revealed By Sar1-g | 1e-18 | ||
| 4bas_A | 199 | Structure Of The Arl6 Bbs3 Small Gtpase From Trypan | 3e-18 | ||
| 2h16_A | 183 | Structure Of Human Adp-Ribosylation Factor-Like 5 ( | 4e-18 | ||
| 2fa9_A | 189 | The Crystal Structure Of Sar1[h79g]-gdp Provides In | 4e-18 | ||
| 2h17_A | 181 | Structure Of Human Adp-Ribosylation Factor-Like 5 ( | 4e-18 | ||
| 1yzg_A | 179 | Structure Of Human Adp-ribosylation Factor-like 8 L | 4e-18 | ||
| 3bh7_A | 164 | Crystal Structure Of The Rp2-Arl3 Complex Bound To | 6e-18 | ||
| 3bh6_A | 164 | Crystal Structure Of The Rp2-Arl3 Complex Bound To | 6e-17 | ||
| 2qtv_B | 167 | Structure Of Sec23-Sar1 Complexed With The Active F | 2e-16 | ||
| 1m2o_B | 190 | Crystal Structure Of The Sec23-Sar1 Complex Length | 3e-16 | ||
| 2rhd_A | 175 | Crystal Structure Of Cryptosporidium Parvum Small G | 6e-14 | ||
| 4i1o_A | 181 | Crystal Structure Of The Legionella Pneumophila Gap | 2e-12 | ||
| 3jza_A | 175 | Crystal Structure Of Human Rab1b In Complex With Th | 2e-12 | ||
| 1ky2_A | 182 | Gppnhp-Bound Ypt7p At 1.6 A Resolution Length = 182 | 3e-12 | ||
| 4fmc_B | 171 | Espg-Rab1 Complex Length = 171 | 3e-12 | ||
| 4fmb_B | 171 | Vira-Rab1 Complex Structure Length = 171 | 3e-12 | ||
| 4fmd_F | 164 | Espg-Rab1 Complex Structure At 3.05 A Length = 164 | 4e-12 | ||
| 3l0i_B | 199 | Complex Structure Of Sidm/drra With The Wild Type R | 4e-12 | ||
| 2fol_A | 191 | Crystal Structure Of Human Rab1a In Complex With Gd | 4e-12 | ||
| 3sfv_A | 181 | Crystal Structure Of The Gdp-Bound Rab1a S25n Mutan | 5e-12 | ||
| 3tkl_A | 196 | Crystal Structure Of The Gtp-Bound Rab1a In Complex | 6e-12 | ||
| 2hup_A | 201 | Crystal Structure Of Human Rab43 In Complex With Gd | 6e-12 | ||
| 4fmc_F | 117 | Espg-Rab1 Complex Length = 117 | 2e-11 | ||
| 2wwx_A | 175 | Crystal Structure Of The SidmDRRA(GEFGDF DOMAIN)-Ra | 5e-11 | ||
| 1ek0_A | 170 | Gppnhp-Bound Ypt51 At 1.48 A Resolution Length = 17 | 5e-11 | ||
| 2gf9_A | 189 | Crystal Structure Of Human Rab3d In Complex With Gd | 8e-11 | ||
| 2bcg_Y | 206 | Structure Of Doubly Prenylated Ypt1:gdi Complex Len | 8e-11 | ||
| 1ukv_Y | 206 | Structure Of Rabgdp-Dissociation Inhibitor In Compl | 1e-10 | ||
| 1yzn_A | 185 | Gppnhp-Bound Ypt1p Gtpase Length = 185 | 1e-10 | ||
| 1n6p_A | 170 | Crystal Structure Of Human Rab5a A30e Mutant Comple | 1e-10 | ||
| 1n6o_A | 170 | Crystal Structure Of Human Rab5a A30k Mutant Comple | 1e-10 | ||
| 1n6n_A | 170 | Crystal Structure Of Human Rab5a A30r Mutant Comple | 2e-10 | ||
| 1tu3_A | 171 | Crystal Structure Of Rab5 Complex With Rabaptin5 C- | 2e-10 | ||
| 1n6h_A | 170 | Crystal Structure Of Human Rab5a Length = 170 | 2e-10 | ||
| 1n6i_A | 170 | Crystal Structure Of Human Rab5a A30p Mutant Comple | 3e-10 | ||
| 1n6r_A | 170 | Crystal Structure Of Human Rab5a A30l Mutant Comple | 4e-10 | ||
| 2g77_B | 198 | Crystal Structure Of Gyp1 Tbc Domain In Complex Wit | 4e-10 | ||
| 3rab_A | 169 | Gppnhp-bound Rab3a At 2.0 A Resolution Length = 169 | 5e-10 | ||
| 1huq_A | 164 | 1.8a Crystal Structure Of The Monomeric Gtpase Rab5 | 6e-10 | ||
| 3tw8_B | 181 | Gef Domain Of Dennd 1b In Complex With Rab Gtpase R | 6e-10 | ||
| 2g6b_A | 180 | Crystal Structure Of Human Rab26 In Complex With A | 7e-10 | ||
| 2hei_A | 179 | Crystal Structure Of Human Rab5b In Complex With Gd | 7e-10 | ||
| 1z06_A | 189 | Gppnhp-Bound Rab33 Gtpase Length = 189 | 1e-09 | ||
| 1tu4_A | 171 | Crystal Structure Of Rab5-Gdp Complex Length = 171 | 1e-09 | ||
| 1vg1_A | 185 | Gdp-bound Rab7 Length = 185 | 1e-09 | ||
| 3law_A | 207 | Structure Of Gtp-Bound L129f Mutant Rab7 Length = 2 | 1e-09 | ||
| 1vg0_B | 207 | The Crystal Structures Of The Rep-1 Protein In Comp | 1e-09 | ||
| 3qbt_A | 174 | Crystal Structure Of Ocrl1 540-678 In Complex With | 1e-09 | ||
| 1s8f_A | 177 | Crystal Structure Of Rab9 Complexed To Gdp Reveals | 2e-09 | ||
| 1wms_A | 177 | High Resolution Crystal Structure Of Human Rab9 Gtp | 2e-09 | ||
| 1x3s_A | 195 | Crystal Structure Of Human Rab18 In Complex With Gp | 2e-09 | ||
| 3mjh_A | 168 | Crystal Structure Of Human Rab5a In Complex With Th | 2e-09 | ||
| 1z07_A | 166 | Gppnhp-Bound Rab5c G55q Mutant Gtpase Length = 166 | 3e-09 | ||
| 1zbd_A | 203 | Structural Basis Of Rab Effector Specificity: Cryst | 3e-09 | ||
| 2fu5_C | 183 | Structure Of Rab8 In Complex With Mss4 Length = 183 | 4e-09 | ||
| 2ocb_A | 180 | Crystal Structure Of Human Rab9b In Complex With A | 4e-09 | ||
| 1yzl_A | 179 | Gppnhp-Bound Rab9 Gtpase Length = 179 | 7e-09 | ||
| 1z0d_A | 167 | Gdp-bound Rab5c Gtpase Length = 167 | 7e-09 | ||
| 3tso_A | 178 | Structure Of The Cancer Associated Rab25 Protein In | 1e-08 | ||
| 2ew1_A | 201 | Crystal Structure Of Rab30 In Complex With A Gtp An | 1e-08 | ||
| 1z22_A | 168 | Gdp-Bound Rab23 Gtpase Crystallized In C222(1) Spac | 1e-08 | ||
| 1t91_A | 207 | Crystal Structure Of Human Small Gtpase Rab7(Gtp) L | 2e-08 | ||
| 3dz8_A | 191 | Crystal Structure Of Human Rab3b Gtpase Bound With | 2e-08 | ||
| 2fg5_A | 192 | Crystal Structure Of Human Rab31 In Complex With A | 2e-08 | ||
| 2oil_A | 193 | Crystal Structure Of Human Rab25 In Complex With Gd | 2e-08 | ||
| 1d5c_A | 162 | Crystal Structure Of Plasmodium Falciparum Rab6 Com | 3e-08 | ||
| 2eqb_A | 174 | Crystal Structure Of The Rab Gtpase Sec4p, The Sec2 | 5e-08 | ||
| 3cph_A | 213 | Crystal Structure Of Sec4 In Complex With Rab-Gdi L | 7e-08 | ||
| 2ocy_C | 170 | Complex Of The Guanine Exchange Factor Sec2p And Th | 8e-08 | ||
| 2bku_A | 177 | Kap95p:rangtp Complex Length = 177 | 8e-08 | ||
| 1g17_A | 170 | Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma) | 1e-07 | ||
| 2il1_A | 192 | Crystal Structure Of A Predicted Human Gtpase In Co | 1e-07 | ||
| 1byu_A | 216 | Canine Gdp-Ran Length = 216 | 1e-07 | ||
| 1g16_A | 170 | Crystal Structure Of Sec4-Gdp Length = 170 | 2e-07 | ||
| 1z08_A | 170 | Gppnhp-Bound Rab21 Q53g Mutant Gtpase Length = 170 | 2e-07 | ||
| 1yvd_A | 169 | Gppnhp-Bound Rab22 Gtpase Length = 169 | 2e-07 | ||
| 2o52_A | 200 | Crystal Structure Of Human Rab4b In Complex With Gd | 3e-07 | ||
| 2bmd_A | 186 | High Resolution Structure Of Gdp-Bound Human Rab4a | 5e-07 | ||
| 1wa5_A | 176 | Crystal Structure Of The Exportin Cse1p Complexed W | 9e-07 | ||
| 1yu9_A | 175 | Gppnhp-Bound Rab4a Length = 175 | 9e-07 | ||
| 1yzu_A | 170 | Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution Leng | 1e-06 | ||
| 1rrp_A | 204 | Structure Of The Ran-Gppnhp-Ranbd1 Complex Length = | 1e-06 | ||
| 2hxs_A | 178 | Crystal Structure Of Rab28a Gtpase In The Inactive | 1e-06 | ||
| 2efc_B | 181 | Ara7-GdpATVPS9A Length = 181 | 1e-06 | ||
| 2p5s_A | 199 | Rab Domain Of Human Rasef In Complex With Gdp Lengt | 1e-06 | ||
| 3gj0_A | 221 | Crystal Structure Of Human Rangdp Length = 221 | 1e-06 | ||
| 1a2k_C | 216 | Gdpran-Ntf2 Complex Length = 216 | 1e-06 | ||
| 1yzt_A | 184 | Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution Leng | 1e-06 | ||
| 3bc1_A | 195 | Crystal Structure Of The Complex Rab27a-slp2a Lengt | 1e-06 | ||
| 3ea5_A | 216 | Kap95p Binding Induces The Switch Loops Of Rangdp T | 2e-06 | ||
| 1qg2_A | 216 | Canine Gdp-Ran R76e Mutant Length = 216 | 2e-06 | ||
| 1qbk_C | 216 | Structure Of The Karyopherin Beta2-ran Gppnhp Nucle | 2e-06 | ||
| 1yzq_A | 170 | Gppnhp-Bound Rab6 Gtpase Length = 170 | 2e-06 | ||
| 2y8e_A | 179 | Crystal Structure Of D. Melanogaster Rab6 Gtpase Bo | 2e-06 | ||
| 3bfk_A | 181 | Crystal Structure Of Plasmodium Falciparum Rab11a I | 2e-06 | ||
| 2nty_C | 180 | Rop4-Gdp-Prone8 Length = 180 | 2e-06 | ||
| 2fe4_A | 171 | The Crystal Structure Of Human Neuronal Rab6b In It | 3e-06 | ||
| 2gil_A | 162 | Structure Of The Extremely Slow Gtpase Rab6a In The | 3e-06 | ||
| 1qg4_A | 216 | Canine Gdp-Ran F72y Mutant Length = 216 | 4e-06 | ||
| 2wbl_C | 180 | Three-Dimensional Structure Of A Binary Rop-Prone C | 4e-06 | ||
| 1z0j_A | 170 | Structure Of Gtp-Bound Rab22q64l Gtpase In Complex | 6e-06 | ||
| 3gj4_A | 221 | Crystal Structure Of Human Rangdp-Nup153znf3 Comple | 7e-06 | ||
| 1z0k_A | 172 | Structure Of Gtp-Bound Rab4q67l Gtpase In Complex W | 7e-06 | ||
| 3nby_C | 176 | Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclea | 8e-06 | ||
| 3nc1_C | 182 | Crystal Structure Of The Crm1-Rangtp Complex Length | 9e-06 | ||
| 2erx_A | 172 | Crystal Structure Of Diras2 In Complex With Gdp And | 1e-05 | ||
| 1yzk_A | 184 | Gppnhp Bound Rab11 Gtpase Length = 184 | 1e-05 | ||
| 2x19_A | 172 | Crystal Structure Of Importin13 - Rangtp Complex Le | 1e-05 | ||
| 3icq_B | 171 | Karyopherin Nuclear State Length = 171 | 1e-05 | ||
| 1oiv_A | 191 | X-Ray Structure Of The Small G Protein Rab11a In Co | 1e-05 | ||
| 3ran_A | 216 | Canine Gdp-Ran Q69l Mutant Length = 216 | 1e-05 | ||
| 1z0f_A | 179 | Gdp-Bound Rab14 Gtpase Length = 179 | 1e-05 | ||
| 2f7s_A | 217 | The Crystal Structure Of Human Rab27b Bound To Gdp | 1e-05 | ||
| 3m1i_A | 219 | Crystal Structure Of Yeast Crm1 (Xpo1p) In Complex | 2e-05 | ||
| 2f9l_A | 199 | 3d Structure Of Inactive Human Rab11b Gtpase Length | 2e-05 | ||
| 3bwd_D | 182 | Crystal Structure Of The Plant Rho Protein Rop5 Len | 2e-05 | ||
| 4djt_A | 218 | Crystal Structure Of A Nuclear Gtp-Binding Protein | 2e-05 | ||
| 3oes_A | 201 | Crystal Structure Of The Small Gtpase Rhebl1 Length | 3e-05 | ||
| 4dkx_A | 216 | Crystal Structure Of The Rab 6a'(Q72l) Length = 216 | 3e-05 | ||
| 2ke5_A | 174 | Solution Structure And Dynamics Of The Small Gtpase | 3e-05 | ||
| 4drz_A | 196 | Crystal Structure Of Human Rab14 Length = 196 | 3e-05 | ||
| 1z0a_A | 174 | Gdp-Bound Rab2a Gtpase Length = 174 | 3e-05 | ||
| 2kwi_A | 178 | Ralb-Rlip76 (Ralbp1) Complex Length = 178 | 3e-05 | ||
| 3cwz_A | 188 | Strucure Of Rab6(Gtp)-R6ip1 Complex Length = 188 | 5e-05 | ||
| 3cpj_B | 223 | Crystal Structure Of Ypt31 In Complex With Yeast Ra | 8e-05 | ||
| 2hv8_A | 172 | Crystal Structure Of Gtp-Bound Rab11 In Complex Wit | 8e-05 | ||
| 3clv_A | 208 | Crystal Structure Of Rab5a From Plasmodium Falcipar | 9e-05 | ||
| 2a5j_A | 191 | Crystal Structure Of Human Rab2b Length = 191 | 1e-04 | ||
| 3bbp_A | 211 | Rab6-Gtp:gcc185 Rab Binding Domain Complex Length = | 1e-04 | ||
| 3rwm_B | 185 | Crystal Structure Of Ypt32 In Complex With Gppnhp L | 1e-04 | ||
| 2if0_A | 200 | Crystal Structure Of Mouse Rab27b Bound To Gdp In M | 1e-04 | ||
| 1oiw_A | 191 | X-ray Structure Of The Small G Protein Rab11a In Co | 2e-04 | ||
| 1svk_A | 353 | Structure Of The K180p Mutant Of Gi Alpha Subunit B | 2e-04 | ||
| 2iez_A | 220 | Crystal Structure Of Mouse Rab27b Bound To Gdp In M | 2e-04 | ||
| 2d7c_A | 167 | Crystal Structure Of Human Rab11 In Complex With Fi | 2e-04 | ||
| 2gzd_A | 173 | Crystal Structure Of Rab11 In Complex With Rab11-Fi | 2e-04 | ||
| 2iey_A | 195 | Crystal Structure Of Mouse Rab27b Bound To Gdp In H | 2e-04 | ||
| 1shz_A | 340 | Crystal Structure Of The P115rhogef Rgrgs Domain In | 2e-04 | ||
| 2zet_A | 203 | Crystal Structure Of The Small Gtpase Rab27b Comple | 3e-04 | ||
| 2a78_A | 187 | Crystal Structure Of The C3bot-Rala Complex Reveals | 4e-04 | ||
| 1uad_A | 175 | Crystal Structure Of The Rala-gppnhp-sec5 Ral-bindi | 4e-04 | ||
| 2ery_A | 172 | The Crystal Structure Of The Ras Related Protein Rr | 5e-04 | ||
| 2j1l_A | 214 | Crystal Structure Of Human Rho-Related Gtp-Binding | 5e-04 | ||
| 2bov_A | 206 | Molecular Recognition Of An Adp-Ribosylating Clostr | 5e-04 | ||
| 2gf0_A | 199 | The Crystal Structure Of The Human Diras1 Gtpase In | 7e-04 | ||
| 3ihw_A | 184 | Crystal Structure Of The Ras-Like Domain Of Centg3 | 7e-04 | ||
| 1u8y_A | 168 | Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal | 7e-04 | ||
| 3c7k_A | 333 | Molecular Architecture Of Galphao And The Structura | 8e-04 |
| >pdb|2H18|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10b (Arl10b) Length = 193 | Back alignment and structure |
|
| >pdb|2AL7|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10c Length = 186 | Back alignment and structure |
|
| >pdb|1ZD9|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10b Length = 188 | Back alignment and structure |
|
| >pdb|1R4A|A Chain A, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor Like Protein 1 (Arl1) And Grip Domain Of Golgin245 Complex Length = 165 | Back alignment and structure |
|
| >pdb|3RD1|A Chain A, Structure Of An Adp Ribosylation Factor From Entamoeba Histolytica Hm- 1:imss Bound To Mg-Gdp Length = 178 | Back alignment and structure |
|
| >pdb|3AQ4|A Chain A, Molecular Insights Into Plant Cell Proliferation Disturbance By Agrobacterium Protein 6b Length = 184 | Back alignment and structure |
|
| >pdb|4DCN|A Chain A, Crystal Structure Analysis Of The Arfaptin2 Bar Domain In Complex With Arl1 Length = 166 | Back alignment and structure |
|
| >pdb|2A5D|A Chain A, Structural Basis For The Activation Of Cholera Toxin By Human Arf6-Gtp Length = 175 | Back alignment and structure |
|
| >pdb|1E0S|A Chain A, Small G Protein Arf6-Gdp Length = 174 | Back alignment and structure |
|
| >pdb|1RRG|A Chain A, Non-Myristoylated Rat Adp-Ribosylation Factor-1 Complexed With Gdp, Dimeric Crystal Form Length = 181 | Back alignment and structure |
|
| >pdb|1HUR|A Chain A, Human Adp-Ribosylation Factor 1 Complexed With Gdp, Full Length = 180 | Back alignment and structure |
|
| >pdb|3LVR|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In Trans State Soaked With Calcium Length = 497 | Back alignment and structure |
|
| >pdb|2A5G|A Chain A, Cholera Toxin A1 Subunit Bound To Arf6(Q67l) Length = 175 | Back alignment and structure |
|
| >pdb|3O47|A Chain A, Crystal Structure Of Arfgap1-Arf1 Fusion Protein Length = 329 | Back alignment and structure |
|
| >pdb|2K5U|A Chain A, Solution Structure Of Myirstoylated Yeast Arf1 Protein, Gdp- Bound Length = 181 | Back alignment and structure |
|
| >pdb|4FME|C Chain C, Espg-Rab1-Arf6 Complex Length = 160 | Back alignment and structure |
|
| >pdb|3N5C|A Chain A, Crystal Structure Of Arf6delta13 Complexed With Gdp Length = 162 | Back alignment and structure |
|
| >pdb|3LRP|A Chain A, Crystal Structure Of Plasmodium Falciparum Adp-Ribosylation Factor 1 Length = 181 | Back alignment and structure |
|
| >pdb|1MR3|F Chain F, Saccharomyces Cerevisiae Adp-Ribosylation Factor 2 (Scarf2) Complexed With Gdp-3'p At 1.6a Resolution Length = 181 | Back alignment and structure |
|
| >pdb|2W83|A Chain A, Crystal Structure Of The Arf6 Gtpase In Complex With A Specific Effector, Jip4 Length = 165 | Back alignment and structure |
|
| >pdb|3VHX|A Chain A, The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesin-Like Protein 1) Complex Length = 172 | Back alignment and structure |
|
| >pdb|3DOE|A Chain A, Complex Of Arl2 And Bart, Crystal Form 1 Length = 192 | Back alignment and structure |
|
| >pdb|1Z6X|A Chain A, Structure Of Human Adp-Ribosylation Factor 4 Length = 180 | Back alignment and structure |
|
| >pdb|2H57|A Chain A, Crystal Structure Of Human Adp-Ribosylation Factor-Like 6 Length = 190 | Back alignment and structure |
|
| >pdb|2KSQ|A Chain A, The Myristoylated Yeast Arf1 In A Gtp And Bicelle Bound Conformation Length = 181 | Back alignment and structure |
|
| >pdb|2B6H|A Chain A, Structure Of Human Adp-Ribosylation Factor 5 Length = 192 | Back alignment and structure |
|
| >pdb|3PCR|B Chain B, Structure Of Espg-Arf6 Complex Length = 162 | Back alignment and structure |
|
| >pdb|1RE0|A Chain A, Structure Of Arf1-Gdp Bound To Sec7 Domain Complexed With Brefeldin A Length = 164 | Back alignment and structure |
|
| >pdb|3TJZ|A Chain A, Crystal Structure Of Arf1 Bound To The GammaZETA-Cop Core Complex Length = 164 | Back alignment and structure |
|
| >pdb|1MOZ|A Chain A, Adp-Ribosylation Factor-Like 1 (Arl1) From Saccharomyces Cerevisiae Length = 183 | Back alignment and structure |
|
| >pdb|1KSH|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 2 (Native) Length = 186 | Back alignment and structure |
|
| >pdb|1KSG|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 1 Length = 186 | Back alignment and structure |
|
| >pdb|1J2J|A Chain A, Crystal Structure Of Gga1 Gat N-terminal Region In Complex With Arf1 Gtp Form Length = 166 | Back alignment and structure |
|
| >pdb|1UPT|A Chain A, Structure Of A Complex Of The Golgin-245 Grip Domain With Arl1 Length = 171 | Back alignment and structure |
|
| >pdb|2X77|A Chain A, Crystal Structure Of Leishmania Major Adp Ribosylation Factor-Like 1. Length = 189 | Back alignment and structure |
|
| >pdb|4GOK|B Chain B, The Crystal Structure Of Arl2gppnhp In Complex With Unc119a Length = 169 | Back alignment and structure |
|
| >pdb|1Z6Y|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5 Length = 179 | Back alignment and structure |
|
| >pdb|1ZJ6|A Chain A, Crystal Structure Of Human Arl5 Length = 187 | Back alignment and structure |
|
| >pdb|1KSJ|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 2 (Semet) Length = 186 | Back alignment and structure |
|
| >pdb|1FZQ|A Chain A, Crystal Structure Of Murine Arl3-Gdp Length = 181 | Back alignment and structure |
|
| >pdb|4GOJ|A Chain A, The Crystal Structure Of Full Length Arl3gppnhp In Complex With Unc119a Length = 189 | Back alignment and structure |
|
| >pdb|1F6B|A Chain A, Crystal Structure Of Sar1-Gdp Complex Length = 198 | Back alignment and structure |
|
| >pdb|2GAO|A Chain A, Crystal Structure Of Human Sar1a In Complex With Gdp Length = 208 | Back alignment and structure |
|
| >pdb|2FMX|A Chain A, An Open Conformation Of Switch I Revealed By Sar1-gdp Crystal Structure At Low Mg(2+) Length = 195 | Back alignment and structure |
|
| >pdb|4BAS|A Chain A, Structure Of The Arl6 Bbs3 Small Gtpase From Trypanosoma Brucei With Bound Nucleotide Analogue Gppnp Length = 199 | Back alignment and structure |
|
| >pdb|2H16|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5) Length = 183 | Back alignment and structure |
|
| >pdb|2FA9|A Chain A, The Crystal Structure Of Sar1[h79g]-gdp Provides Insight Into The Coat-controlled Gtp Hydrolysis In The Disassembly Of Cop Ii Length = 189 | Back alignment and structure |
|
| >pdb|2H17|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5) (Casp Target) Length = 181 | Back alignment and structure |
|
| >pdb|1YZG|A Chain A, Structure Of Human Adp-ribosylation Factor-like 8 Length = 179 | Back alignment and structure |
|
| >pdb|3BH7|A Chain A, Crystal Structure Of The Rp2-Arl3 Complex Bound To Gdp-Alf4 Length = 164 | Back alignment and structure |
|
| >pdb|3BH6|A Chain A, Crystal Structure Of The Rp2-Arl3 Complex Bound To Gppnhp Length = 164 | Back alignment and structure |
|
| >pdb|2QTV|B Chain B, Structure Of Sec23-Sar1 Complexed With The Active Fragment Of Sec31 Length = 167 | Back alignment and structure |
|
| >pdb|1M2O|B Chain B, Crystal Structure Of The Sec23-Sar1 Complex Length = 190 | Back alignment and structure |
|
| >pdb|2RHD|A Chain A, Crystal Structure Of Cryptosporidium Parvum Small Gtpase Rab1a Length = 175 | Back alignment and structure |
|
| >pdb|4I1O|A Chain A, Crystal Structure Of The Legionella Pneumophila Gap Domain Of Lepb In Complex With Rab1b Bound To Gdp And Bef3 Length = 181 | Back alignment and structure |
|
| >pdb|3JZA|A Chain A, Crystal Structure Of Human Rab1b In Complex With The Gef Domain Of DrraSIDM FROM LEGIONELLA PNEUMOPHILA Length = 175 | Back alignment and structure |
|
| >pdb|1KY2|A Chain A, Gppnhp-Bound Ypt7p At 1.6 A Resolution Length = 182 | Back alignment and structure |
|
| >pdb|4FMC|B Chain B, Espg-Rab1 Complex Length = 171 | Back alignment and structure |
|
| >pdb|4FMB|B Chain B, Vira-Rab1 Complex Structure Length = 171 | Back alignment and structure |
|
| >pdb|4FMD|F Chain F, Espg-Rab1 Complex Structure At 3.05 A Length = 164 | Back alignment and structure |
|
| >pdb|3L0I|B Chain B, Complex Structure Of Sidm/drra With The Wild Type Rab1 Length = 199 | Back alignment and structure |
|
| >pdb|2FOL|A Chain A, Crystal Structure Of Human Rab1a In Complex With Gdp Length = 191 | Back alignment and structure |
|
| >pdb|3SFV|A Chain A, Crystal Structure Of The Gdp-Bound Rab1a S25n Mutant In Complex With The Coiled-Coil Domain Of Lida From Legionella Pneumophila Length = 181 | Back alignment and structure |
|
| >pdb|3TKL|A Chain A, Crystal Structure Of The Gtp-Bound Rab1a In Complex With The Coiled- Coil Domain Of Lida From Legionella Pneumophila Length = 196 | Back alignment and structure |
|
| >pdb|2HUP|A Chain A, Crystal Structure Of Human Rab43 In Complex With Gdp Length = 201 | Back alignment and structure |
|
| >pdb|4FMC|F Chain F, Espg-Rab1 Complex Length = 117 | Back alignment and structure |
|
| >pdb|2WWX|A Chain A, Crystal Structure Of The SidmDRRA(GEFGDF DOMAIN)-Rab1 (Gtpase Domain) Complex Length = 175 | Back alignment and structure |
|
| >pdb|1EK0|A Chain A, Gppnhp-Bound Ypt51 At 1.48 A Resolution Length = 170 | Back alignment and structure |
|
| >pdb|2GF9|A Chain A, Crystal Structure Of Human Rab3d In Complex With Gdp Length = 189 | Back alignment and structure |
|
| >pdb|2BCG|Y Chain Y, Structure Of Doubly Prenylated Ypt1:gdi Complex Length = 206 | Back alignment and structure |
|
| >pdb|1UKV|Y Chain Y, Structure Of Rabgdp-Dissociation Inhibitor In Complex With Prenylated Ypt1 Gtpase Length = 206 | Back alignment and structure |
|
| >pdb|1YZN|A Chain A, Gppnhp-Bound Ypt1p Gtpase Length = 185 | Back alignment and structure |
|
| >pdb|1N6P|A Chain A, Crystal Structure Of Human Rab5a A30e Mutant Complex With Gppnhp Length = 170 | Back alignment and structure |
|
| >pdb|1N6O|A Chain A, Crystal Structure Of Human Rab5a A30k Mutant Complex With Gppnhp Length = 170 | Back alignment and structure |
|
| >pdb|1N6N|A Chain A, Crystal Structure Of Human Rab5a A30r Mutant Complex With Gppnhp Length = 170 | Back alignment and structure |
|
| >pdb|1TU3|A Chain A, Crystal Structure Of Rab5 Complex With Rabaptin5 C-Terminal Domain Length = 171 | Back alignment and structure |
|
| >pdb|1N6H|A Chain A, Crystal Structure Of Human Rab5a Length = 170 | Back alignment and structure |
|
| >pdb|1N6I|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With Gdp Length = 170 | Back alignment and structure |
|
| >pdb|1N6R|A Chain A, Crystal Structure Of Human Rab5a A30l Mutant Complex With Gppnhp Length = 170 | Back alignment and structure |
|
| >pdb|2G77|B Chain B, Crystal Structure Of Gyp1 Tbc Domain In Complex With Rab33 Gtpase Bound To Gdp And Alf3 Length = 198 | Back alignment and structure |
|
| >pdb|3RAB|A Chain A, Gppnhp-bound Rab3a At 2.0 A Resolution Length = 169 | Back alignment and structure |
|
| >pdb|1HUQ|A Chain A, 1.8a Crystal Structure Of The Monomeric Gtpase Rab5c (Mouse) Length = 164 | Back alignment and structure |
|
| >pdb|3TW8|B Chain B, Gef Domain Of Dennd 1b In Complex With Rab Gtpase Rab35 Length = 181 | Back alignment and structure |
|
| >pdb|2G6B|A Chain A, Crystal Structure Of Human Rab26 In Complex With A Gtp Analogue Length = 180 | Back alignment and structure |
|
| >pdb|2HEI|A Chain A, Crystal Structure Of Human Rab5b In Complex With Gdp Length = 179 | Back alignment and structure |
|
| >pdb|1Z06|A Chain A, Gppnhp-Bound Rab33 Gtpase Length = 189 | Back alignment and structure |
|
| >pdb|1TU4|A Chain A, Crystal Structure Of Rab5-Gdp Complex Length = 171 | Back alignment and structure |
|
| >pdb|1VG1|A Chain A, Gdp-bound Rab7 Length = 185 | Back alignment and structure |
|
| >pdb|3LAW|A Chain A, Structure Of Gtp-Bound L129f Mutant Rab7 Length = 207 | Back alignment and structure |
|
| >pdb|1VG0|B Chain B, The Crystal Structures Of The Rep-1 Protein In Complex With Monoprenylated Rab7 Protein Length = 207 | Back alignment and structure |
|
| >pdb|3QBT|A Chain A, Crystal Structure Of Ocrl1 540-678 In Complex With Rab8a:gppnhp Length = 174 | Back alignment and structure |
|
| >pdb|1S8F|A Chain A, Crystal Structure Of Rab9 Complexed To Gdp Reveals A Dimer With An Active Conformation Of Switch Ii Length = 177 | Back alignment and structure |
|
| >pdb|1WMS|A Chain A, High Resolution Crystal Structure Of Human Rab9 Gtpase: A Novel Antiviral Drug Target Length = 177 | Back alignment and structure |
|
| >pdb|1X3S|A Chain A, Crystal Structure Of Human Rab18 In Complex With Gppnhp Length = 195 | Back alignment and structure |
|
| >pdb|3MJH|A Chain A, Crystal Structure Of Human Rab5a In Complex With The C2h2 Zinc Finger Of Eea1 Length = 168 | Back alignment and structure |
|
| >pdb|1Z07|A Chain A, Gppnhp-Bound Rab5c G55q Mutant Gtpase Length = 166 | Back alignment and structure |
|
| >pdb|1ZBD|A Chain A, Structural Basis Of Rab Effector Specificity: Crystal Structure Of The Small G Protein Rab3a Complexed With The Effector Domain Of Rabphilin-3a Length = 203 | Back alignment and structure |
|
| >pdb|2FU5|C Chain C, Structure Of Rab8 In Complex With Mss4 Length = 183 | Back alignment and structure |
|
| >pdb|2OCB|A Chain A, Crystal Structure Of Human Rab9b In Complex With A Gtp Analogue Length = 180 | Back alignment and structure |
|
| >pdb|1YZL|A Chain A, Gppnhp-Bound Rab9 Gtpase Length = 179 | Back alignment and structure |
|
| >pdb|1Z0D|A Chain A, Gdp-bound Rab5c Gtpase Length = 167 | Back alignment and structure |
|
| >pdb|3TSO|A Chain A, Structure Of The Cancer Associated Rab25 Protein In Complex With Fip2 Length = 178 | Back alignment and structure |
|
| >pdb|2EW1|A Chain A, Crystal Structure Of Rab30 In Complex With A Gtp Analogue Length = 201 | Back alignment and structure |
|
| >pdb|1Z22|A Chain A, Gdp-Bound Rab23 Gtpase Crystallized In C222(1) Space Group Length = 168 | Back alignment and structure |
|
| >pdb|1T91|A Chain A, Crystal Structure Of Human Small Gtpase Rab7(Gtp) Length = 207 | Back alignment and structure |
|
| >pdb|3DZ8|A Chain A, Crystal Structure Of Human Rab3b Gtpase Bound With Gdp Length = 191 | Back alignment and structure |
|
| >pdb|2FG5|A Chain A, Crystal Structure Of Human Rab31 In Complex With A Gtp Analogue Length = 192 | Back alignment and structure |
|
| >pdb|2OIL|A Chain A, Crystal Structure Of Human Rab25 In Complex With Gdp Length = 193 | Back alignment and structure |
|
| >pdb|1D5C|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab6 Complexed With Gdp Length = 162 | Back alignment and structure |
|
| >pdb|2EQB|A Chain A, Crystal Structure Of The Rab Gtpase Sec4p, The Sec2p Gef Domain, And Phosphate Complex Length = 174 | Back alignment and structure |
|
| >pdb|3CPH|A Chain A, Crystal Structure Of Sec4 In Complex With Rab-Gdi Length = 213 | Back alignment and structure |
|
| >pdb|2OCY|C Chain C, Complex Of The Guanine Exchange Factor Sec2p And The Rab Gtpase Sec4p Length = 170 | Back alignment and structure |
|
| >pdb|2BKU|A Chain A, Kap95p:rangtp Complex Length = 177 | Back alignment and structure |
|
| >pdb|1G17|A Chain A, Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)- Imidotriphosphate Length = 170 | Back alignment and structure |
|
| >pdb|2IL1|A Chain A, Crystal Structure Of A Predicted Human Gtpase In Complex With Gdp Length = 192 | Back alignment and structure |
|
| >pdb|1BYU|A Chain A, Canine Gdp-Ran Length = 216 | Back alignment and structure |
|
| >pdb|1G16|A Chain A, Crystal Structure Of Sec4-Gdp Length = 170 | Back alignment and structure |
|
| >pdb|1Z08|A Chain A, Gppnhp-Bound Rab21 Q53g Mutant Gtpase Length = 170 | Back alignment and structure |
|
| >pdb|1YVD|A Chain A, Gppnhp-Bound Rab22 Gtpase Length = 169 | Back alignment and structure |
|
| >pdb|2O52|A Chain A, Crystal Structure Of Human Rab4b In Complex With Gdp Length = 200 | Back alignment and structure |
|
| >pdb|2BMD|A Chain A, High Resolution Structure Of Gdp-Bound Human Rab4a Length = 186 | Back alignment and structure |
|
| >pdb|1WA5|A Chain A, Crystal Structure Of The Exportin Cse1p Complexed With Its Cargo (Kap60p) And Rangtp Length = 176 | Back alignment and structure |
|
| >pdb|1YU9|A Chain A, Gppnhp-Bound Rab4a Length = 175 | Back alignment and structure |
|
| >pdb|1YZU|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution Length = 170 | Back alignment and structure |
|
| >pdb|1RRP|A Chain A, Structure Of The Ran-Gppnhp-Ranbd1 Complex Length = 204 | Back alignment and structure |
|
| >pdb|2HXS|A Chain A, Crystal Structure Of Rab28a Gtpase In The Inactive (Gdp-3'p- Bound) Form Length = 178 | Back alignment and structure |
|
| >pdb|2EFC|B Chain B, Ara7-GdpATVPS9A Length = 181 | Back alignment and structure |
|
| >pdb|2P5S|A Chain A, Rab Domain Of Human Rasef In Complex With Gdp Length = 199 | Back alignment and structure |
|
| >pdb|3GJ0|A Chain A, Crystal Structure Of Human Rangdp Length = 221 | Back alignment and structure |
|
| >pdb|1A2K|C Chain C, Gdpran-Ntf2 Complex Length = 216 | Back alignment and structure |
|
| >pdb|1YZT|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution Length = 184 | Back alignment and structure |
|
| >pdb|3BC1|A Chain A, Crystal Structure Of The Complex Rab27a-slp2a Length = 195 | Back alignment and structure |
|
| >pdb|3EA5|A Chain A, Kap95p Binding Induces The Switch Loops Of Rangdp To Adopt The Gtp- Bound Conformation: Implications For Nuclear Import Complex Assembly Dynamics Length = 216 | Back alignment and structure |
|
| >pdb|1QG2|A Chain A, Canine Gdp-Ran R76e Mutant Length = 216 | Back alignment and structure |
|
| >pdb|1QBK|C Chain C, Structure Of The Karyopherin Beta2-ran Gppnhp Nuclear Transport Complex Length = 216 | Back alignment and structure |
|
| >pdb|1YZQ|A Chain A, Gppnhp-Bound Rab6 Gtpase Length = 170 | Back alignment and structure |
|
| >pdb|2Y8E|A Chain A, Crystal Structure Of D. Melanogaster Rab6 Gtpase Bound To Gmppnp Length = 179 | Back alignment and structure |
|
| >pdb|3BFK|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab11a In Complex With Gdp Length = 181 | Back alignment and structure |
|
| >pdb|2NTY|C Chain C, Rop4-Gdp-Prone8 Length = 180 | Back alignment and structure |
|
| >pdb|2FE4|A Chain A, The Crystal Structure Of Human Neuronal Rab6b In Its Inactive Gdp-Bound Form Length = 171 | Back alignment and structure |
|
| >pdb|2GIL|A Chain A, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp Bound Form At 1.8 Resolution Length = 162 | Back alignment and structure |
|
| >pdb|1QG4|A Chain A, Canine Gdp-Ran F72y Mutant Length = 216 | Back alignment and structure |
|
| >pdb|2WBL|C Chain C, Three-Dimensional Structure Of A Binary Rop-Prone Complex Length = 180 | Back alignment and structure |
|
| >pdb|1Z0J|A Chain A, Structure Of Gtp-Bound Rab22q64l Gtpase In Complex With The Minimal Rab Binding Domain Of Rabenosyn-5 Length = 170 | Back alignment and structure |
|
| >pdb|3GJ4|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf3 Complex Length = 221 | Back alignment and structure |
|
| >pdb|1Z0K|A Chain A, Structure Of Gtp-Bound Rab4q67l Gtpase In Complex With The Central Rab Binding Domain Of Rabenosyn-5 Length = 172 | Back alignment and structure |
|
| >pdb|3NBY|C Chain C, Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclear Export Complex Length = 176 | Back alignment and structure |
|
| >pdb|3NC1|C Chain C, Crystal Structure Of The Crm1-Rangtp Complex Length = 182 | Back alignment and structure |
|
| >pdb|2ERX|A Chain A, Crystal Structure Of Diras2 In Complex With Gdp And Inorganic Phosphate Length = 172 | Back alignment and structure |
|
| >pdb|1YZK|A Chain A, Gppnhp Bound Rab11 Gtpase Length = 184 | Back alignment and structure |
|
| >pdb|2X19|A Chain A, Crystal Structure Of Importin13 - Rangtp Complex Length = 172 | Back alignment and structure |
|
| >pdb|3ICQ|B Chain B, Karyopherin Nuclear State Length = 171 | Back alignment and structure |
|
| >pdb|1OIV|A Chain A, X-Ray Structure Of The Small G Protein Rab11a In Complex With Gdp Length = 191 | Back alignment and structure |
|
| >pdb|3RAN|A Chain A, Canine Gdp-Ran Q69l Mutant Length = 216 | Back alignment and structure |
|
| >pdb|1Z0F|A Chain A, Gdp-Bound Rab14 Gtpase Length = 179 | Back alignment and structure |
|
| >pdb|2F7S|A Chain A, The Crystal Structure Of Human Rab27b Bound To Gdp Length = 217 | Back alignment and structure |
|
| >pdb|3M1I|A Chain A, Crystal Structure Of Yeast Crm1 (Xpo1p) In Complex With Yeas (Yrb1p) And Yeast Rangtp (Gsp1pgtp) Length = 219 | Back alignment and structure |
|
| >pdb|2F9L|A Chain A, 3d Structure Of Inactive Human Rab11b Gtpase Length = 199 | Back alignment and structure |
|
| >pdb|3BWD|D Chain D, Crystal Structure Of The Plant Rho Protein Rop5 Length = 182 | Back alignment and structure |
|
| >pdb|4DJT|A Chain A, Crystal Structure Of A Nuclear Gtp-Binding Protein From Encephalitozoon Cuniculi Bound To Gdp-Mg2+ Length = 218 | Back alignment and structure |
|
| >pdb|3OES|A Chain A, Crystal Structure Of The Small Gtpase Rhebl1 Length = 201 | Back alignment and structure |
|
| >pdb|4DKX|A Chain A, Crystal Structure Of The Rab 6a'(Q72l) Length = 216 | Back alignment and structure |
|
| >pdb|2KE5|A Chain A, Solution Structure And Dynamics Of The Small Gtpase Ralb In Its Active Conformation: Significance For Effector Protein Binding Length = 174 | Back alignment and structure |
|
| >pdb|4DRZ|A Chain A, Crystal Structure Of Human Rab14 Length = 196 | Back alignment and structure |
|
| >pdb|1Z0A|A Chain A, Gdp-Bound Rab2a Gtpase Length = 174 | Back alignment and structure |
|
| >pdb|2KWI|A Chain A, Ralb-Rlip76 (Ralbp1) Complex Length = 178 | Back alignment and structure |
|
| >pdb|3CWZ|A Chain A, Strucure Of Rab6(Gtp)-R6ip1 Complex Length = 188 | Back alignment and structure |
|
| >pdb|3CPJ|B Chain B, Crystal Structure Of Ypt31 In Complex With Yeast Rab-Gdi Length = 223 | Back alignment and structure |
|
| >pdb|2HV8|A Chain A, Crystal Structure Of Gtp-Bound Rab11 In Complex With Fip3 Length = 172 | Back alignment and structure |
|
| >pdb|3CLV|A Chain A, Crystal Structure Of Rab5a From Plasmodium Falciparum, Pfb0500c Length = 208 | Back alignment and structure |
|
| >pdb|2A5J|A Chain A, Crystal Structure Of Human Rab2b Length = 191 | Back alignment and structure |
|
| >pdb|3BBP|A Chain A, Rab6-Gtp:gcc185 Rab Binding Domain Complex Length = 211 | Back alignment and structure |
|
| >pdb|3RWM|B Chain B, Crystal Structure Of Ypt32 In Complex With Gppnhp Length = 185 | Back alignment and structure |
|
| >pdb|2IF0|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In Monoclinic Space Group Length = 200 | Back alignment and structure |
|
| >pdb|1OIW|A Chain A, X-ray Structure Of The Small G Protein Rab11a In Complex With Gtpgammas Length = 191 | Back alignment and structure |
|
| >pdb|1SVK|A Chain A, Structure Of The K180p Mutant Of Gi Alpha Subunit Bound To Alf4 And Gdp Length = 353 | Back alignment and structure |
|
| >pdb|2IEZ|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In Monoclinic Space Group Length = 220 | Back alignment and structure |
|
| >pdb|2D7C|A Chain A, Crystal Structure Of Human Rab11 In Complex With Fip3 Rab- Binding Domain Length = 167 | Back alignment and structure |
|
| >pdb|2GZD|A Chain A, Crystal Structure Of Rab11 In Complex With Rab11-Fip2 Length = 173 | Back alignment and structure |
|
| >pdb|2IEY|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In Hexagonal Space Group Length = 195 | Back alignment and structure |
|
| >pdb|1SHZ|A Chain A, Crystal Structure Of The P115rhogef Rgrgs Domain In A Complex With Galpha(13):galpha(i1) Chimera Length = 340 | Back alignment and structure |
|
| >pdb|2ZET|A Chain A, Crystal Structure Of The Small Gtpase Rab27b Complexed With The Slp Homology Domain Of Slac2-AMELANOPHILIN Length = 203 | Back alignment and structure |
|
| >pdb|2A78|A Chain A, Crystal Structure Of The C3bot-Rala Complex Reveals A Novel Type Of Action Of A Bacterial Exoenzyme Length = 187 | Back alignment and structure |
|
| >pdb|1UAD|A Chain A, Crystal Structure Of The Rala-gppnhp-sec5 Ral-binding Domain Complex Length = 175 | Back alignment and structure |
|
| >pdb|2ERY|A Chain A, The Crystal Structure Of The Ras Related Protein Rras2 (Rras2) In The Gdp Bound State Length = 172 | Back alignment and structure |
|
| >pdb|2J1L|A Chain A, Crystal Structure Of Human Rho-Related Gtp-Binding Protein Rhod Length = 214 | Back alignment and structure |
|
| >pdb|2BOV|A Chain A, Molecular Recognition Of An Adp-Ribosylating Clostridium Botulinum C3 Exoenzyme By Rala Gtpase Length = 206 | Back alignment and structure |
|
| >pdb|2GF0|A Chain A, The Crystal Structure Of The Human Diras1 Gtpase In The Inactive Gdp Bound State Length = 199 | Back alignment and structure |
|
| >pdb|3IHW|A Chain A, Crystal Structure Of The Ras-Like Domain Of Centg3 Length = 184 | Back alignment and structure |
|
| >pdb|1U8Y|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two Novel Binding Sites That Are Also Present In Ras And Rap Length = 168 | Back alignment and structure |
|
| >pdb|3C7K|A Chain A, Molecular Architecture Of Galphao And The Structural Basis For Rgs16-Mediated Deactivation Length = 333 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A* Length = 188 | Back alignment and structure |
|---|
Score = 233 bits (597), Expect = 1e-79
Identities = 107/172 (62%), Positives = 140/172 (81%)
Query: 6 SLFFKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLG 65
K+EMEL+L+GLQ +GKT+ VN IA+G ++EDMIPTVGFNMRK+TKGNVTIKLWD+G
Sbjct: 16 PRGSKEEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRKITKGNVTIKLWDIG 75
Query: 66 GQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKID 125
GQ RFR+MWERYCRGVSAI+Y+VDAAD++ + +++ELH LL KP L GIP+LVLGNK D
Sbjct: 76 GQPRFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRD 135
Query: 126 KSEALSKQALVDQLGLESITDREVCCYMISCKDSINIDAVIDWLIKHSKTAK 177
AL ++ L++++ L +I DRE+CCY ISCK+ NID + WLI+HSK+ +
Sbjct: 136 LPGALDEKELIEKMNLSAIQDREICCYSISCKEKDNIDITLQWLIQHSKSRR 187
|
| >1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A* Length = 171 | Back alignment and structure |
|---|
Score = 217 bits (556), Expect = 1e-73
Identities = 56/171 (32%), Positives = 94/171 (54%), Gaps = 1/171 (0%)
Query: 7 LFFKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGG 66
+EM + ++GL AGKT+++ + G IPT+GFN+ VT N+ ++WDLGG
Sbjct: 2 SHMTREMRILILGLDGAGKTTILYRLQVGEVVT-TIPTIGFNVETVTYKNLKFQVWDLGG 60
Query: 67 QRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDK 126
R W Y A++YVVD+ DRD + I++SEL +L + L L+V NK D
Sbjct: 61 LTSIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDM 120
Query: 127 SEALSKQALVDQLGLESITDREVCCYMISCKDSINIDAVIDWLIKHSKTAK 177
+A++ + + LGL ++ DR+ + S +D ++WL++ K+ +
Sbjct: 121 EQAMTSSEMANSLGLPALKDRKWQIFKTSATKGTGLDEAMEWLVETLKSRQ 171
|
| >2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major} Length = 189 | Back alignment and structure |
|---|
Score = 208 bits (532), Expect = 9e-70
Identities = 57/169 (33%), Positives = 93/169 (55%), Gaps = 1/169 (0%)
Query: 6 SLFFKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLG 65
L +++ + ++GL NAGKTS++ + G +PTVG N+ + N++ ++WDLG
Sbjct: 16 LLPADRKIRVLMLGLDNAGKTSILYRLHLGDVVT-TVPTVGVNLETLQYKNISFEVWDLG 74
Query: 66 GQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKID 125
GQ R W Y A++YVVD+ DRD + +A+ EL+ LL + L LL+ NK D
Sbjct: 75 GQTGVRPYWRCYFSDTDAVIYVVDSTDRDRMGVAKHELYALLDEDELRKSLLLIFANKQD 134
Query: 126 KSEALSKQALVDQLGLESITDREVCCYMISCKDSINIDAVIDWLIKHSK 174
+A S+ + +QLG+ SI +R S K + +DWL++ +
Sbjct: 135 LPDAASEAEIAEQLGVSSIMNRTWTIVKSSSKTGDGLVEGMDWLVERLR 183
|
| >2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens} Length = 190 | Back alignment and structure |
|---|
Score = 203 bits (518), Expect = 2e-67
Identities = 51/171 (29%), Positives = 96/171 (56%), Gaps = 3/171 (1%)
Query: 10 KQEMELSLIGLQNAGKTSLVNTIATGG-YSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQR 68
+E+ + +GL N+GKT+++N + S++++PT+GF++ K +++ ++D+ GQ
Sbjct: 19 SKEVHVLCLGLDNSGKTTIINKLKPSNAQSQNILPTIGFSIEKFKSSSLSFTVFDMSGQG 78
Query: 69 RFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSG--IPLLVLGNKIDK 126
R+R +WE Y + AI++V+D++DR + +A+ EL LL P + IP+L NK+D
Sbjct: 79 RYRNLWEHYYKEGQAIIFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFANKMDL 138
Query: 127 SEALSKQALVDQLGLESITDREVCCYMISCKDSINIDAVIDWLIKHSKTAK 177
+A++ + L LE+I D+ + +DWL +T K
Sbjct: 139 RDAVTSVKVSQLLCLENIKDKPWHICASDAIKGEGLQEGVDWLQDQIQTVK 189
|
| >1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B* Length = 190 | Back alignment and structure |
|---|
Score = 196 bits (501), Expect = 6e-65
Identities = 53/172 (30%), Positives = 84/172 (48%), Gaps = 8/172 (4%)
Query: 8 FFKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQ 67
+ + +L +GL NAGKT+L++ + + + PT ++ GN+ +DLGG
Sbjct: 19 LWNKHGKLLFLGLDNAGKTTLLHMLKNDRLAT-LQPTWHPTSEELAIGNIKFTTFDLGGH 77
Query: 68 RRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKS 127
+ R +W+ Y V+ I+++VDAAD + AR EL L L +P ++LGNKID
Sbjct: 78 IQARRLWKDYFPEVNGIVFLVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAP 137
Query: 128 EALSKQALVDQLGLESIT-------DREVCCYMISCKDSINIDAVIDWLIKH 172
A+S+ L LGL + T R V +M S WL ++
Sbjct: 138 NAVSEAELRSALGLLNTTGSQRIEGQRPVEVFMCSVVMRNGYLEAFQWLSQY 189
|
| >1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A* Length = 181 | Back alignment and structure |
|---|
Score = 193 bits (494), Expect = 5e-64
Identities = 55/170 (32%), Positives = 84/170 (49%), Gaps = 1/170 (0%)
Query: 8 FFKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQ 67
QE+ + L+GL NAGKT+L+ +A + PT GFN++ V + +WD+GGQ
Sbjct: 12 APDQEVRILLLGLDNAGKTTLLKQLA-SEDISHITPTQGFNIKSVQSQGFKLNVWDIGGQ 70
Query: 68 RRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKS 127
R+ R W Y ++YV+D+ADR EL ELL + LS +P+L+ NK D
Sbjct: 71 RKIRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLL 130
Query: 128 EALSKQALVDQLGLESITDREVCCYMISCKDSINIDAVIDWLIKHSKTAK 177
A + + L L +I DR S + ++W+ K+ K
Sbjct: 131 TAAPASEIAEGLNLHTIRDRVWQIQSCSALTGEGVQDGMNWVCKNVNAKK 180
|
| >1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 183 | Back alignment and structure |
|---|
Score = 192 bits (490), Expect = 2e-63
Identities = 58/183 (31%), Positives = 89/183 (48%), Gaps = 7/183 (3%)
Query: 1 MYLHISLFF------KQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTK 54
M S F +E+ + ++GL AGKT+++ + G PT+GFN+ ++
Sbjct: 1 MGNIFSSMFDKLWGSNKELRILILGLDGAGKTTILYRLQ-IGEVVTTKPTIGFNVETLSY 59
Query: 55 GNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSG 114
N+ + +WDLGGQ R W Y +A+++VVD+ D+D + A ELH +L + L
Sbjct: 60 KNLKLNVWDLGGQTSIRPYWRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQD 119
Query: 115 IPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCKDSINIDAVIDWLIKHSK 174
LLV NK D+ ALS + +L L + DR S I +DWLI K
Sbjct: 120 AALLVFANKQDQPGALSASEVSKELNLVELKDRSWSIVASSAIKGEGITEGLDWLIDVIK 179
Query: 175 TAK 177
+
Sbjct: 180 EEQ 182
|
| >2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A* Length = 192 | Back alignment and structure |
|---|
Score = 191 bits (488), Expect = 4e-63
Identities = 52/169 (30%), Positives = 85/169 (50%), Gaps = 1/169 (0%)
Query: 6 SLFFKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLG 65
+F K++M + ++GL AGKT+++ + G IPT+GFN+ V N+ +WD+G
Sbjct: 23 RIFGKKQMRILMVGLDAAGKTTILYKLK-LGEIVTTIPTIGFNVETVEYKNICFTVWDVG 81
Query: 66 GQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKID 125
GQ + R +W Y + +++VVD+ DR+ V + EL ++L + L LLV NK D
Sbjct: 82 GQDKIRPLWRHYFQNTQGLIFVVDSNDRERVQESADELQKMLQEDELRDAVLLVFANKQD 141
Query: 126 KSEALSKQALVDQLGLESITDREVCCYMISCKDSINIDAVIDWLIKHSK 174
A+ L D+LGL+ + R + +DWL
Sbjct: 142 MPNAMPVSELTDKLGLQHLRSRTWYVQATCATQGTGLYDGLDWLSHELS 190
|
| >1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A* Length = 186 | Back alignment and structure |
|---|
Score = 190 bits (484), Expect = 2e-62
Identities = 53/170 (31%), Positives = 89/170 (52%), Gaps = 2/170 (1%)
Query: 6 SLFF-KQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDL 64
+ ++E+ L ++GL NAGKT+++ G + + PT+GFN++ + + +WD+
Sbjct: 11 KMKQKERELRLLMLGLDNAGKTTILKKFN-GEDVDTISPTLGFNIKTLEHRGFKLNIWDV 69
Query: 65 GGQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKI 124
GGQ+ R+ W Y +++VVD+ADR + + EL LL++ L+G LL+ NK
Sbjct: 70 GGQKSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQ 129
Query: 125 DKSEALSKQALVDQLGLESITDREVCCYMISCKDSINIDAVIDWLIKHSK 174
D ALS A+ + L L+SI S ++ IDWL+
Sbjct: 130 DLPGALSCNAIQEALELDSIRSHHWRIQGCSAVTGEDLLPGIDWLLDDIS 179
|
| >1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A* Length = 198 | Back alignment and structure |
|---|
Score = 189 bits (481), Expect = 7e-62
Identities = 47/177 (26%), Positives = 93/177 (52%), Gaps = 13/177 (7%)
Query: 8 FFKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQ 67
+K+ +L +GL NAGKT+L++ + + +PT+ ++T +T +DLGG
Sbjct: 21 LYKKTGKLVFLGLDNAGKTTLLHMLKDDRLGQH-VPTLHPTSEELTIAGMTFTTFDLGGH 79
Query: 68 RRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKS 127
+ R +W+ Y ++ I+++VD AD + + ++ EL L+ +++ +P+L+LGNKID+
Sbjct: 80 IQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRP 139
Query: 128 EALSKQALVDQLG------------LESITDREVCCYMISCKDSINIDAVIDWLIKH 172
EA+S++ L + G L+ + R + +M S W+ ++
Sbjct: 140 EAISEERLREMFGLYGQTTGKGSVSLKELNARPLEVFMCSVLKRQGYGEGFRWMAQY 196
|
| >1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ... Length = 164 | Back alignment and structure |
|---|
Score = 186 bits (474), Expect = 3e-61
Identities = 53/165 (32%), Positives = 84/165 (50%), Gaps = 1/165 (0%)
Query: 13 MELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRT 72
M + ++GL AGKT+++ + G IPT+GFN+ V N++ +WD+GGQ + R
Sbjct: 1 MRILMVGLDAAGKTTILYKLK-LGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRP 59
Query: 73 MWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSK 132
+W Y + +++VVD+ DR+ V AR EL +L + L LLV NK D A++
Sbjct: 60 LWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNA 119
Query: 133 QALVDQLGLESITDREVCCYMISCKDSINIDAVIDWLIKHSKTAK 177
+ D+LGL S+ R + +DWL + K
Sbjct: 120 AEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQLRNQK 164
|
| >1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8 Length = 187 | Back alignment and structure |
|---|
Score = 186 bits (474), Expect = 7e-61
Identities = 48/178 (26%), Positives = 84/178 (47%), Gaps = 5/178 (2%)
Query: 1 MYLHIS----LFFKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTKGN 56
M + + LF QE ++ ++GL NAGKT+++ + PT+G N+ ++ N
Sbjct: 1 MGILFTRIWRLFNHQEHKVIIVGLDNAGKTTILYQFS-MNEVVHTSPTIGSNVEEIVINN 59
Query: 57 VTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIP 116
+WD+GGQ R+ W Y ++ VVD+ DR+ + + R EL+++L L
Sbjct: 60 TRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAG 119
Query: 117 LLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCKDSINIDAVIDWLIKHSK 174
LL+ NK D E ++ + L L SI D + + ++W++ K
Sbjct: 120 LLIFANKQDVKECMTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWMMSRLK 177
|
| >2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A* Length = 181 | Back alignment and structure |
|---|
Score = 175 bits (447), Expect = 6e-57
Identities = 44/163 (26%), Positives = 78/163 (47%), Gaps = 1/163 (0%)
Query: 10 KQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQRR 69
QE ++ ++GL NAGKT+++ + PT+G N+ ++ N +WD+GGQ
Sbjct: 19 SQEHKVIIVGLDNAGKTTILYQFS-MNEVVHTSPTIGSNVEEIVINNTRFLMWDIGGQES 77
Query: 70 FRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEA 129
R+ W Y ++ VVD+ DR+ + + R EL+++L L LL+ NK D E
Sbjct: 78 LRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKEC 137
Query: 130 LSKQALVDQLGLESITDREVCCYMISCKDSINIDAVIDWLIKH 172
++ + L L SI D + + ++W++
Sbjct: 138 MTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWMMSR 180
|
| >3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens} Length = 329 | Back alignment and structure |
|---|
Score = 150 bits (381), Expect = 3e-45
Identities = 57/177 (32%), Positives = 89/177 (50%), Gaps = 1/177 (0%)
Query: 1 MYLHISLFFKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTKGNVTIK 60
LF K+EM + ++GL AGKT+++ + G IPT+GFN+ V N++
Sbjct: 154 PPQPRGLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVETVEYKNISFT 212
Query: 61 LWDLGGQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVL 120
+WD+GGQ + R +W Y + +++VVD+ DR+ V AR EL +L + L LLV
Sbjct: 213 VWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVF 272
Query: 121 GNKIDKSEALSKQALVDQLGLESITDREVCCYMISCKDSINIDAVIDWLIKHSKTAK 177
NK D A++ + D+LGL S+ R + +DWL + K
Sbjct: 273 ANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQLRNQK 329
|
| >2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2 Length = 214 | Back alignment and structure |
|---|
Score = 124 bits (312), Expect = 4e-36
Identities = 36/146 (24%), Positives = 63/146 (43%), Gaps = 8/146 (5%)
Query: 10 KQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTKGN---VTIKLWDLGG 66
+ + +GL ++GKT L + TG Y + ++ + N ++ L DL G
Sbjct: 5 SSQRAVLFVGLCDSGKTLLFVRLLTGQYRD-TQTSITDSSAIYKVNNNRGNSLTLIDLPG 63
Query: 67 QRRFR-TMWERYCRGVSAILYVVDAADRD-SVPIARSELHELLMKPSLS--GIPLLVLGN 122
R + +R+ A+++VVD+A V L+++L+ LL+ N
Sbjct: 64 HESLRFQLLDRFKSSARAVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACN 123
Query: 123 KIDKSEALSKQALVDQLGLESITDRE 148
K D + A S + + QL E T R
Sbjct: 124 KQDIAMAKSAKLIQQQLEKELNTLRV 149
|
| >1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 218 | Back alignment and structure |
|---|
Score = 122 bits (309), Expect = 1e-35
Identities = 32/148 (21%), Positives = 57/148 (38%), Gaps = 13/148 (8%)
Query: 6 SLFFKQ---EMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTKGNVTIKLW 62
+ KQ + + + G QN+GKTSL+ + T + + + + L
Sbjct: 3 HMGIKQKSYQPSIIIAGPQNSGKTSLLTLLTTDSVRPT-VVSQE-PLSAADYDGSGVTLV 60
Query: 63 DLGGQRRFRTMWERY----CRGVSAILYVVDAA-DRDSVPIARSELHELLMKPSLS---G 114
D G + R Y + V ++++VD+ D + L ++L S G
Sbjct: 61 DFPGHVKLRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENG 120
Query: 115 IPLLVLGNKIDKSEALSKQALVDQLGLE 142
I +L+ NK + A + D L E
Sbjct: 121 IDILIACNKSELFTARPPSKIKDALESE 148
|
| >2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae} Length = 193 | Back alignment and structure |
|---|
Score = 120 bits (304), Expect = 3e-35
Identities = 30/141 (21%), Positives = 54/141 (38%), Gaps = 10/141 (7%)
Query: 10 KQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQRR 69
+ + + G QN+GKTSL+ + T + + + + L D G +
Sbjct: 46 SYQPSIIIAGPQNSGKTSLLTLLTTDSVRP-TVVSQE-PLSAADYDGSGVTLVDFPGHVK 103
Query: 70 FRTMWERY----CRGVSAILYVVDAA-DRDSVPIARSELHELLMKPSLS---GIPLLVLG 121
R Y + V ++++VD+ D + L ++L S GI +L+
Sbjct: 104 LRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIAC 163
Query: 122 NKIDKSEALSKQALVDQLGLE 142
NK + A + D L E
Sbjct: 164 NKSELFTARPPSKIKDALESE 184
|
| >3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A* Length = 198 | Back alignment and structure |
|---|
Score = 117 bits (295), Expect = 8e-34
Identities = 27/187 (14%), Positives = 63/187 (33%), Gaps = 27/187 (14%)
Query: 8 FFKQEMELSLI--GLQNAGKTSLVNTIATGGYSEDM----------IPTVGFNM-----R 50
F +E+ ++ G +GKT+ + I + T+ F+
Sbjct: 8 FANREINFKIVYYGPGLSGKTTNLKWIYSKVPEGRKGEMVSLATEDERTLFFDFLPLDIG 67
Query: 51 KVTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLM-- 108
+V L+ + GQ + + RGV I++V D+A + +
Sbjct: 68 EVKGFKTRFHLYTVPGQVFYNASRKLILRGVDGIVFVADSAPNRLRA-NAESMRNMRENL 126
Query: 109 ---KPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCKDSINIDAV 165
+L +P+++ NK D +AL + + + + + + +
Sbjct: 127 AEYGLTLDDVPIVIQVNKRDLPDALPVEMVRAVVDP----EGKFPVLEAVATEGKGVFET 182
Query: 166 IDWLIKH 172
+ + +
Sbjct: 183 LKEVSRL 189
|
| >3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A* Length = 196 | Back alignment and structure |
|---|
Score = 101 bits (254), Expect = 8e-28
Identities = 35/168 (20%), Positives = 60/168 (35%), Gaps = 15/168 (8%)
Query: 6 SLFFKQEMELSLIGLQNAGKTSLVNTIATGGYSED---MIPTVGFNMRKVT-KGNVTIKL 61
F + + L+GL+ +GK+S+ + + + T ++ V ++
Sbjct: 14 LYFQGSKPRILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTNKIYKDDISNSSFVNFQI 73
Query: 62 WDLGGQRRFRTMW---ERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLL 118
WD GQ F E RG A++YV+DA D + R + +
Sbjct: 74 WDFPGQMDFFDPTFDYEMIFRGTGALIYVIDAQDDYMEALTRLHITVSKAYKVNPDMNFE 133
Query: 119 VLGNKID------KSEALS--KQALVDQLGLESITDREVCCYMISCKD 158
V +K+D K E Q D L + + Y+ S D
Sbjct: 134 VFIHKVDGLSDDHKIETQRDIHQRANDDLADAGLEKLHLSFYLTSIYD 181
|
| >1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 170 | Back alignment and structure |
|---|
Score = 85.6 bits (212), Expect = 1e-21
Identities = 46/161 (28%), Positives = 76/161 (47%), Gaps = 9/161 (5%)
Query: 9 FKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVG--FNMRKVTKGNVTIKL--WDL 64
K L L+G GK+S+V + ++E+ PT+G F ++VT T+K WD
Sbjct: 4 IK----LVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDT 59
Query: 65 GGQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKI 124
GQ RF ++ Y R A L V D S AR + EL + S I + ++GNKI
Sbjct: 60 AGQERFASLAPXYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQAS-KDIIIALVGNKI 118
Query: 125 DKSEALSKQALVDQLGLESITDREVCCYMISCKDSINIDAV 165
D + ++ + + G + ++ + + S K N++ V
Sbjct: 119 DXLQEGGERKVAREEGEKLAEEKGLLFFETSAKTGENVNDV 159
|
| >3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 1qg4_A* 3ea5_A* 1qg2_A* 1byu_A* 3ran_A* 3gjx_C* ... Length = 221 | Back alignment and structure |
|---|
Score = 86.6 bits (215), Expect = 1e-21
Identities = 39/171 (22%), Positives = 65/171 (38%), Gaps = 23/171 (13%)
Query: 9 FKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVG--FNMRKVTKGNVTIKL--WDL 64
FK L L+G GKT+ V TG + + + T+G + IK WD
Sbjct: 16 FK----LVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDT 71
Query: 65 GGQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKI 124
GQ +F + + Y + + D R + + +L+ IP+++ GNK+
Sbjct: 72 AGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVC--ENIPIVLCGNKV 129
Query: 125 DKSEALSK---QALVDQLGLESITDREVCCYM-ISCKDSINIDAVIDWLIK 171
D + K + L+ Y IS K + N + WL +
Sbjct: 130 DIKDRKVKAKSIVFHRKKNLQ---------YYDISAKSNYNFEKPFLWLAR 171
|
| >3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} Length = 307 | Back alignment and structure |
|---|
Score = 86.6 bits (214), Expect = 5e-21
Identities = 32/179 (17%), Positives = 65/179 (36%), Gaps = 21/179 (11%)
Query: 17 LIGLQNAGKTSLVNTIATGGYSED---MIPTVGFNMRKVT-KGNVTIKLWDLGGQRRF-- 70
L+G +GK+S+ + I + + D + T+ + GN+T+ LWD GGQ F
Sbjct: 8 LMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHSHLRFLGNMTLNLWDCGGQDVFME 67
Query: 71 ---RTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSL--SGIPLLVLGNKID 125
+ + V +++V D + + + L + + VL +K+D
Sbjct: 68 NYFTKQKDHIFQMVQVLIHVFDVESTEVLK-DIEIFAKALKQLRKYSPDAKIFVLLHKMD 126
Query: 126 KSEALSKQALVDQL------GLESITDREVCCYMISCKDSINIDA---VIDWLIKHSKT 175
+ ++ L + + + S D A ++ LI +
Sbjct: 127 LVQLDKREELFQIMMKNLSETSSEFGFPNLIGFPTSIWDESLYKAWSQIVCSLIPNMSN 185
|
| >1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B* Length = 207 | Back alignment and structure |
|---|
Score = 84.6 bits (210), Expect = 5e-21
Identities = 38/157 (24%), Positives = 65/157 (41%), Gaps = 12/157 (7%)
Query: 17 LIGLQNAGKTSLVNTIATGGYSEDMIPTVG--FNMRKVTKGNVTIKL--WDLGGQRRFRT 72
++G GKTSL+N +S T+G F ++V + + + WD GQ RF++
Sbjct: 13 ILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQS 72
Query: 73 MWERYCRGVSAILYVVDAADRDS---VPIARSELHELLMKPSLSGIPLLVLGNKIDKSEA 129
+ + RG + V D ++ + R E P +VLGNKID
Sbjct: 73 LGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKID---- 128
Query: 130 LSKQALVDQLGLESITDREVCCYM-ISCKDSINIDAV 165
L + + + + Y S K++IN++
Sbjct: 129 LENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQA 165
|
| >1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8 Length = 195 | Back alignment and structure |
|---|
Score = 81.9 bits (203), Expect = 4e-20
Identities = 40/157 (25%), Positives = 67/157 (42%), Gaps = 16/157 (10%)
Query: 17 LIGLQNAGKTSLVNTIATGGYSEDMIPTVG--FNMRKVTKGNVTIKL--WDLGGQRRFRT 72
+IG GK+SL+ + ++ T+G F ++ ++ KL WD GQ RFRT
Sbjct: 20 IIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRT 79
Query: 73 MWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSE-ALS 131
+ Y RG ++ V D RD+ + L+EL + + I +++GNKIDK +
Sbjct: 80 LTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKENREVD 139
Query: 132 K---QALVDQLGLESITDREVCCYMISCKDSINIDAV 165
+ + + I E S K +
Sbjct: 140 RNEGLKFARKHSMLFI---EA-----SAKTCDGVQCA 168
|
| >2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A* Length = 178 | Back alignment and structure |
|---|
Score = 80.3 bits (199), Expect = 1e-19
Identities = 39/160 (24%), Positives = 66/160 (41%), Gaps = 22/160 (13%)
Query: 17 LIGLQNAGKTSLVNTIATGGYSEDMIPTVG--FNMRKVT-KGNVTIKL--WDLGGQRRFR 71
++G +GKTSL A + + T+G F +R++T GN+ + L WD+GGQ
Sbjct: 11 VLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQTIGG 70
Query: 72 TMWERYCRGVSAILYVVDAADRDS---VPIARSELHELLMKPSLSGIPLLVLGNKIDKSE 128
M ++Y G +L V D + S + + + ++ + + LV GNKID
Sbjct: 71 KMLDKYIYGAQGVLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALV-GNKIDLEH 129
Query: 129 --ALSK---QALVDQLGLESITDREVCCYMISCKDSINID 163
+ + G S V S K ++
Sbjct: 130 MRTIKPEKHLRFCQENGFSSH---FV-----SAKTGDSVF 161
|
| >4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi} Length = 218 | Back alignment and structure |
|---|
Score = 81.2 bits (201), Expect = 1e-19
Identities = 38/180 (21%), Positives = 62/180 (34%), Gaps = 37/180 (20%)
Query: 9 FKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVG---FNMRKVTKGNVTIKL--WD 63
+K + LIG GKT+ +N + G + ++ TVG + + IK WD
Sbjct: 12 YK----ICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWD 67
Query: 64 LGGQRRFRTMWERYCRGVSAILYVVDAADRDS---VPIARSELHELLMKPSLSGIPLLVL 120
GQ + + + Y G S + D R + + E + + P++V
Sbjct: 68 TAGQEKKAVLKDVYYIGASGAILFFDVTSRITCQNLARWVKEFQAV----VGNEAPIVVC 123
Query: 121 GNKID--------KSEALSKQALVDQLGLESITDREVCCYM-ISCKDSINIDAVIDWLIK 171
NKID K ++ E Y IS K + N L +
Sbjct: 124 ANKIDIKNRQKISKKLV---MEVLKGKNYE---------YFEISAKTAHNFGLPFLHLAR 171
|
| >3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} Length = 191 | Back alignment and structure |
|---|
Score = 79.6 bits (197), Expect = 3e-19
Identities = 41/164 (25%), Positives = 73/164 (44%), Gaps = 18/164 (10%)
Query: 17 LIGLQNAGKTSLVNTIATGGYSEDMIPTVG--FNMRKVTKGNVTIKL--WDLGGQRRFRT 72
+IG + GKTS + A ++ + TVG F ++ V + +KL WD GQ R+RT
Sbjct: 28 IIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQERYRT 87
Query: 73 MWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSE--AL 130
+ Y RG + + D + +S + ++ ++++GNK D E +
Sbjct: 88 ITTAYYRGAMGFILMYDITNEESFNAVQDWATQIKTYSW-DNAQVILVGNKCDMEEERVV 146
Query: 131 SK---QALVDQLGLESITDREVCCYMISCKDSINIDAVIDWLIK 171
Q L +QLG + E S K++I++ + L+
Sbjct: 147 PTEKGQLLAEQLGFDFF---EA-----SAKENISVRQAFERLVD 182
|
| >2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A* Length = 199 | Back alignment and structure |
|---|
Score = 79.6 bits (197), Expect = 3e-19
Identities = 48/172 (27%), Positives = 73/172 (42%), Gaps = 25/172 (14%)
Query: 1 MYLHISLFFKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVG--FNMRKVTKGNVT 58
MY ++ FK + LIG GK++L++ ++ + T+G F R + T
Sbjct: 1 MYDYL---FK----VVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKT 53
Query: 59 IKL--WDLGGQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIP 116
IK WD GQ R+R + Y RG L V D A + L EL S I
Sbjct: 54 IKAQIWDTAGQERYRRITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHAD-SNIV 112
Query: 117 LLVLGNKIDKSE--ALSK---QALVDQLGLESITDREVCCYMISCKDSINID 163
++++GNK D A+ +A ++ L I E S DS N++
Sbjct: 113 IMLVGNKSDLRHLRAVPTDEARAFAEKNNLSFI---ET-----SALDSTNVE 156
|
| >1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A* Length = 182 | Back alignment and structure |
|---|
Score = 78.8 bits (195), Expect = 4e-19
Identities = 46/161 (28%), Positives = 74/161 (45%), Gaps = 21/161 (13%)
Query: 17 LIGLQNAGKTSLVNTIATGGYSEDMIPTVG--FNMRKVT-KGNVTIKL--WDLGGQRRFR 71
++G GKTSL++ YS+ T+G F ++VT G+ + WD GQ RF+
Sbjct: 13 ILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQ 72
Query: 72 TMWERYCRGVSAILYVVDAADRDS---VPIARSELHELLMKPSLSGIPLLVLGNKIDKSE 128
++ + RG + V D + S + R E S P ++LGNKID E
Sbjct: 73 SLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEE 132
Query: 129 ---ALSK---QALVDQLGLESITDREVCCYMISCKDSINID 163
+S+ Q L LG ++ ++ S K++IN+D
Sbjct: 133 SKKIVSEKSAQELAKSLG-------DIPLFLTSAKNAINVD 166
|
| >1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A Length = 170 | Back alignment and structure |
|---|
Score = 78.7 bits (195), Expect = 4e-19
Identities = 45/163 (27%), Positives = 70/163 (42%), Gaps = 17/163 (10%)
Query: 17 LIGLQNAGKTSLVNTIATGGYSEDMIPTVG--FNMRKVTKGNVTIKL--WDLGGQRRFRT 72
LIG GK+ L+ ++ I T+G F ++ V +KL WD GQ RFRT
Sbjct: 8 LIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRT 67
Query: 73 MWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSE-ALS 131
+ Y RG I+ V D D + + + + LL++GNK D ++
Sbjct: 68 ITTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHAN-DEAQLLLVGNKSDMETRVVT 126
Query: 132 K---QALVDQLGLESITDREVCCYMISCKDSINIDAVIDWLIK 171
+AL +LG+ I E S K+ N++ + L K
Sbjct: 127 ADQGEALAKELGIPFI---ES-----SAKNDDNVNEIFFTLAK 161
|
| >1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A* Length = 177 | Back alignment and structure |
|---|
Score = 78.7 bits (195), Expect = 5e-19
Identities = 42/159 (26%), Positives = 62/159 (38%), Gaps = 20/159 (12%)
Query: 17 LIGLQNAGKTSLVNTIATGGYSEDMIPTVG--FNMRKVTKGNVTIKL--WDLGGQRRFRT 72
L+G GK+SL+N T + + T+G F + + + + WD GQ RFR+
Sbjct: 12 LLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRS 71
Query: 73 MWERYCRGVSAILYVVDAADRDS---VPIARSELHELLMKPSLSGIPLLVLGNKIDKSE- 128
+ + RG L D S + + E P ++LGNKID SE
Sbjct: 72 LRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDISER 131
Query: 129 ALSK---QALVDQLGLESITDREVCCYM-ISCKDSINID 163
+S QA G Y S KD+ N+
Sbjct: 132 QVSTEEAQAWCRDNGD--------YPYFETSAKDATNVA 162
|
| >1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B* Length = 191 | Back alignment and structure |
|---|
Score = 78.4 bits (194), Expect = 8e-19
Identities = 42/160 (26%), Positives = 66/160 (41%), Gaps = 14/160 (8%)
Query: 9 FKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVG--FNMRKVTKGNVTIKL--WDL 64
FK + LIG GK++L++ ++ + T+G F R + TIK WD
Sbjct: 30 FK----VVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDT 85
Query: 65 GGQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKI 124
G R+R + Y RG L V D A + L EL S I ++++GNK
Sbjct: 86 AGLERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHAD-SNIVIMLVGNKS 144
Query: 125 DKSEALSKQALVDQLGLESITDREVCCYM-ISCKDSINID 163
D L V + ++ ++ S DS N++
Sbjct: 145 D----LRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVE 180
|
| >2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A* Length = 183 | Back alignment and structure |
|---|
Score = 78.0 bits (193), Expect = 1e-18
Identities = 43/154 (27%), Positives = 70/154 (45%), Gaps = 10/154 (6%)
Query: 17 LIGLQNAGKTSLVNTIATGGYSEDMIPTVG--FNMRKVTKGNVTIKL--WDLGGQRRFRT 72
LIG GKT ++ + ++ I T+G F +R + IKL WD GQ RFRT
Sbjct: 13 LIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRT 72
Query: 73 MWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSK 132
+ Y RG I+ V D + S R+ + + S + + ++LGNK D ++
Sbjct: 73 ITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHAS-ADVEKMILGNKCD----VND 127
Query: 133 QALVDQLGLESITDREVCCYM-ISCKDSINIDAV 165
+ V + E + +M S K +IN++
Sbjct: 128 KRQVSKERGEKLALDYGIKFMETSAKANINVENA 161
|
| >2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A* Length = 189 | Back alignment and structure |
|---|
Score = 78.0 bits (193), Expect = 1e-18
Identities = 46/164 (28%), Positives = 76/164 (46%), Gaps = 18/164 (10%)
Query: 17 LIGLQNAGKTSLVNTIATGGYSEDMIPTVG--FNMRKVTKGNVTIKL--WDLGGQRRFRT 72
LIG + GKTS + A ++ + TVG F ++ V + + IKL WD GQ R+RT
Sbjct: 27 LIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERYRT 86
Query: 73 MWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSE--AL 130
+ Y RG L + D A+++S + ++ ++++GNK D + +
Sbjct: 87 ITTAYYRGAMGFLLMYDIANQESFAAVQDWATQIKTYSW-DNAQVILVGNKCDLEDERVV 145
Query: 131 SK---QALVDQLGLESITDREVCCYMISCKDSINIDAVIDWLIK 171
+ L D LG E E S K++IN+ V + L+
Sbjct: 146 PAEDGRRLADDLGFEFF---EA-----SAKENINVKQVFERLVD 181
|
| >1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A* Length = 168 | Back alignment and structure |
|---|
Score = 77.1 bits (191), Expect = 1e-18
Identities = 38/154 (24%), Positives = 69/154 (44%), Gaps = 11/154 (7%)
Query: 17 LIGLQNAGKTSLVNTIATGGYSEDMIPTVG--FNMRKVTKGNVTIKL--WDLGGQRRFRT 72
++G GK+S++ G +++D T+G F R++ + ++L WD GQ F
Sbjct: 10 VVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDA 69
Query: 73 MWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSK 132
+ + Y RG A + V DR+S S +++ + IP ++ NKID L
Sbjct: 70 ITKAYYRGAQACVLVFSTTDRESFEAISSWREKVVAEV--GDIPTALVQNKID----LLD 123
Query: 133 QALVDQLGLESITDREVCCYM-ISCKDSINIDAV 165
+ + E + R + S K+ +N+ V
Sbjct: 124 DSCIKNEEAEGLAKRLKLRFYRTSVKEDLNVSEV 157
|
| >2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens} Length = 193 | Back alignment and structure |
|---|
Score = 77.7 bits (192), Expect = 2e-18
Identities = 45/164 (27%), Positives = 69/164 (42%), Gaps = 22/164 (13%)
Query: 9 FKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVG--FNMRKVTKGNVTIKL--WDL 64
FK + LIG GKT+L++ +S D T+G F+ R V G +K WD
Sbjct: 26 FK----VVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDT 81
Query: 65 GGQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKI 124
G R+R + Y RG L V D + + L EL + I ++++GNK
Sbjct: 82 AGLERYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAE-ATIVVMLVGNKS 140
Query: 125 DKSE--ALSK---QALVDQLGLESITDREVCCYMISCKDSINID 163
D S+ + + + GL + E S DS N++
Sbjct: 141 DLSQAREVPTEEARMFAENNGLLFL---ET-----SALDSTNVE 176
|
| >3bbp_A RAB-6, RAS-related protein RAB-6A; golgi complex, GRIP domain, RAB GTPase, ARL GTPase, golgin, RAB effector, clAsp protein; HET: GTP; 3.00A {Homo sapiens} Length = 211 | Back alignment and structure |
|---|
Score = 78.1 bits (193), Expect = 2e-18
Identities = 38/166 (22%), Positives = 71/166 (42%), Gaps = 22/166 (13%)
Query: 9 FKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVG--FNMRKVTKGNVTIKL--WDL 64
FK L +G Q+ GKTSL+ + T+G F + + + T++L WD
Sbjct: 17 FK----LVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDT 72
Query: 65 GGQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKI 124
G RFR++ Y R + + V D + +S + ++ + S + ++++GNK
Sbjct: 73 AGLERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERG-SDVIIMLVGNKT 131
Query: 125 DKSE--ALSK---QALVDQLGLESITDREVCCYMISCKDSINIDAV 165
D ++ +S + +L + I E S K N+ +
Sbjct: 132 DLADKRQVSIEEGERKAKELNVMFI---ET-----SAKAGYNVKQL 169
|
| >3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae} Length = 223 | Back alignment and structure |
|---|
Score = 78.2 bits (193), Expect = 2e-18
Identities = 39/154 (25%), Positives = 62/154 (40%), Gaps = 10/154 (6%)
Query: 17 LIGLQNAGKTSLVNTIATGGYSEDMIPTVG--FNMRKVTKGNVTIKL--WDLGGQRRFRT 72
LIG GK++L++ ++ D T+G F R + IK WD GQ R+R
Sbjct: 18 LIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQERYRA 77
Query: 73 MWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSK 132
+ Y RG L V D + S L E L + + + + ++GNK D L+
Sbjct: 78 ITSAYYRGAVGALIVYDISKSSSYENCNHWLSE-LRENADDNVAVGLIGNKSD----LAH 132
Query: 133 QALVDQLGLESITDREVCCYM-ISCKDSINIDAV 165
V ++ + S +S N+D
Sbjct: 133 LRAVPTEESKTFAQENQLLFTETSALNSENVDKA 166
|
| >3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 213 | Back alignment and structure |
|---|
Score = 77.8 bits (192), Expect = 2e-18
Identities = 45/163 (27%), Positives = 70/163 (42%), Gaps = 17/163 (10%)
Query: 17 LIGLQNAGKTSLVNTIATGGYSEDMIPTVG--FNMRKVTKGNVTIKL--WDLGGQRRFRT 72
LIG GK+ L+ ++ I T+G F ++ V +KL WD GQ RFRT
Sbjct: 25 LIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRT 84
Query: 73 MWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSE-ALS 131
+ Y RG I+ V D D + + + + LL++GNK D ++
Sbjct: 85 ITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHAN-DEAQLLLVGNKSDMETRVVT 143
Query: 132 K---QALVDQLGLESITDREVCCYMISCKDSINIDAVIDWLIK 171
+AL +LG+ I E S K+ N++ + L K
Sbjct: 144 ADQGEALAKELGIPFI---ES-----SAKNDDNVNEIFFTLAK 178
|
| >2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 Length = 201 | Back alignment and structure |
|---|
Score = 77.7 bits (192), Expect = 2e-18
Identities = 42/158 (26%), Positives = 71/158 (44%), Gaps = 18/158 (11%)
Query: 17 LIGLQNAGKTSLVNTIATGGYSEDMIPTVG--FNMRKVTKGNVTIKL--WDLGGQRRFRT 72
LIG GKT LV G + T+G F ++ V +KL WD GQ RFR+
Sbjct: 31 LIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRS 90
Query: 73 MWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSE--AL 130
+ + Y R +A++ D +S L E+ S + + +++GNKID +E +
Sbjct: 91 ITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYAS-NKVITVLVGNKIDLAERREV 149
Query: 131 SK---QALVDQLGLESITDREVCCYMISCKDSINIDAV 165
S+ + + + + E S K+S N++ +
Sbjct: 150 SQQRAEEFSEAQDMYYL---ET-----SAKESDNVEKL 179
|
| >1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8 Length = 203 | Back alignment and structure |
|---|
Score = 77.3 bits (191), Expect = 3e-18
Identities = 43/164 (26%), Positives = 73/164 (44%), Gaps = 18/164 (10%)
Query: 17 LIGLQNAGKTSLVNTIATGGYSEDMIPTVG--FNMRKVTKGNVTIKL--WDLGGQRRFRT 72
+IG + GKTS + A ++ + TVG F ++ + + + IKL WD G R+RT
Sbjct: 13 IIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLERYRT 72
Query: 73 MWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSE--AL 130
+ Y RG + + D + +S + ++ +L++GNK D + +
Sbjct: 73 ITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSW-DNAQVLLVGNKCDMEDERVV 131
Query: 131 SK---QALVDQLGLESITDREVCCYMISCKDSINIDAVIDWLIK 171
S + L D LG E E S KD+IN+ + L+
Sbjct: 132 SSERGRQLADHLGFEFF---EA-----SAKDNINVKQTFERLVD 167
|
| >2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B* Length = 184 | Back alignment and structure |
|---|
Score = 77.0 bits (190), Expect = 3e-18
Identities = 33/172 (19%), Positives = 70/172 (40%), Gaps = 23/172 (13%)
Query: 12 EMELSLIGLQNAGKTSLVNTIATGGYSEDM--IPTVG--FNMRKVT---KGNVTIKL--W 62
M+L ++G +GKT+L+ + S+ TVG + K + L W
Sbjct: 2 RMKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVW 61
Query: 63 DLGGQRRFRTMWERYCRGVSAILYVVDAADRDS-VPIARSELHELLMKPSLSGIPLLVLG 121
D G+ F + + + L V D + + V + L + K S P++++G
Sbjct: 62 DFAGREEFYSTHPHFMTQRALYLAVYDLSKGQAEVDAMKPWLFNI--KARASSSPVILVG 119
Query: 122 NKIDKSE--------ALSKQALVDQLGLESITDREVCCYMISCKDSINIDAV 165
+D S+ + + L+++ G +I D ++ + ++S + +
Sbjct: 120 THLDVSDEKQRKACMSKITKELLNKRGFPAIRD---YHFVNATEESDALAKL 168
|
| >3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens} Length = 199 | Back alignment and structure |
|---|
Score = 76.9 bits (190), Expect = 3e-18
Identities = 49/164 (29%), Positives = 74/164 (45%), Gaps = 18/164 (10%)
Query: 17 LIGLQNAGKTSLVNTIATGGYSEDMIPTVG--FNMRKVTKGNVTIKL--WDLGGQRRFRT 72
LIG GK+ L+ A Y+E I T+G F +R + TIKL WD GQ RFRT
Sbjct: 38 LIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRT 97
Query: 73 MWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSE--AL 130
+ Y RG I+ V D D++S + L E+ S + L++GNK D + +
Sbjct: 98 ITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYAS-ENVNKLLVGNKCDLTTKKVV 156
Query: 131 SK---QALVDQLGLESITDREVCCYMISCKDSINIDAVIDWLIK 171
+ D LG+ + E S K++ N++ +
Sbjct: 157 DYTTAKEFADSLGIPFL---ET-----SAKNATNVEQSFMTMAA 192
|
| >1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A* Length = 170 | Back alignment and structure |
|---|
Score = 76.0 bits (188), Expect = 4e-18
Identities = 47/162 (29%), Positives = 71/162 (43%), Gaps = 14/162 (8%)
Query: 9 FKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVG--FNMRKVTKGNVTIKL--WDL 64
FK + L+G GKTSLV +++ I T+G F +K+ G + L WD
Sbjct: 7 FK----VVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDT 62
Query: 65 GGQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKI 124
GQ RF + Y R + + V D D DS ++ + EL + I L ++GNKI
Sbjct: 63 AGQERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLG-NEICLCIVGNKI 121
Query: 125 DKSEALSKQALVDQLGLESITDREVCCYM-ISCKDSINIDAV 165
D L K+ V ES + + S K + I+ +
Sbjct: 122 D----LEKERHVSIQEAESYAESVGAKHYHTSAKQNKGIEEL 159
|
| >3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens} Length = 196 | Back alignment and structure |
|---|
Score = 76.5 bits (189), Expect = 4e-18
Identities = 49/158 (31%), Positives = 73/158 (46%), Gaps = 18/158 (11%)
Query: 17 LIGLQNAGKTSLVNTIATGGYSEDMIPTVG--FNMRKVTKGNVTIKL--WDLGGQRRFRT 72
LIG GK+ L+ A Y+E I T+G F +R + TIKL WD GQ RFRT
Sbjct: 21 LIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRT 80
Query: 73 MWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSE--AL 130
+ Y RG I+ V D D++S + L E+ S + L++GNK D + +
Sbjct: 81 ITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYAS-ENVNKLLVGNKCDLTTKKVV 139
Query: 131 SK---QALVDQLGLESITDREVCCYMISCKDSINIDAV 165
+ D LG+ + E S K++ N++
Sbjct: 140 DYTTAKEFADSLGIPFL---ET-----SAKNATNVEQS 169
|
| >2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A* Length = 179 | Back alignment and structure |
|---|
Score = 76.1 bits (188), Expect = 5e-18
Identities = 40/166 (24%), Positives = 72/166 (43%), Gaps = 22/166 (13%)
Query: 9 FKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVG--FNMRKVTKGNVTIKL--WDL 64
FK L +G Q+ GKTSL+ + T+G F + + + T++L WD
Sbjct: 15 FK----LVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDT 70
Query: 65 GGQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKI 124
GQ RFR++ Y R + + V D + +S + ++ + S + ++++GNK
Sbjct: 71 AGQERFRSLIPSYIRDSTVAVVVYDITNTNSFHQTSKWIDDVRTERG-SDVIIMLVGNKT 129
Query: 125 DKSE--ALSK---QALVDQLGLESITDREVCCYMISCKDSINIDAV 165
D S+ +S + +L + I E S K N+ +
Sbjct: 130 DLSDKRQVSTEEGERKAKELNVMFI---ET-----SAKAGYNVKQL 167
|
| >1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A* Length = 179 | Back alignment and structure |
|---|
Score = 75.7 bits (187), Expect = 6e-18
Identities = 39/152 (25%), Positives = 61/152 (40%), Gaps = 10/152 (6%)
Query: 17 LIGLQNAGKTSLVNTIATGGYSEDMIPTVG--FNMRKVTKGNVTIKL--WDLGGQRRFRT 72
+IG GK+ L++ + D T+G F R + IKL WD GQ RFR
Sbjct: 20 IIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRA 79
Query: 73 MWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSK 132
+ Y RG + L V D R + S L + + ++++GNK D L
Sbjct: 80 VTRSYYRGAAGALMVYDITRRSTYNHLSSWLTD-ARNLTNPNTVIILIGNKAD----LEA 134
Query: 133 QALVDQLGLESITDREVCCYM-ISCKDSINID 163
Q V + + ++ S K N++
Sbjct: 135 QRDVTYEEAKQFAEENGLLFLEASAKTGENVE 166
|
| >2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens} Length = 199 | Back alignment and structure |
|---|
Score = 76.2 bits (188), Expect = 7e-18
Identities = 37/162 (22%), Positives = 61/162 (37%), Gaps = 24/162 (14%)
Query: 17 LIGLQNAGKTSLVNTIATGGYSEDMIPTVG--FNMRKVTKGNVTIKL--WDLGGQRRFRT 72
L G GK+S + + + E++ T+G F M+ + L WD GQ RFR+
Sbjct: 33 LAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQERFRS 92
Query: 73 MWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSK 132
+ + Y R +L + D S R + + +P++++GNK D + +
Sbjct: 93 IAKSYFRKADGVLLLYDVTCEKSFLNIREWVDMIEDAAH-ETVPIMLVGNKADIRDTAAT 151
Query: 133 -----------QALVDQLGLESITDREVCCYMISCKDSINID 163
+ L G E S KD NI
Sbjct: 152 EGQKCVPGHFGEKLAMTYGALFC---ET-----SAKDGSNIV 185
|
| >3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens} Length = 181 | Back alignment and structure |
|---|
Score = 75.7 bits (187), Expect = 7e-18
Identities = 44/158 (27%), Positives = 72/158 (45%), Gaps = 19/158 (12%)
Query: 17 LIGLQNAGKTSLVNTIATGGYSEDMIPTVG--FNMRKVTKGNVTIKL--WDLGGQRRFRT 72
+IG GK+SL+ A +S I T+G F +R V +KL WD GQ RFRT
Sbjct: 14 IIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFRT 73
Query: 73 MWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSE--AL 130
+ Y RG ++ V D +S + LHE+ + + +++GNK D E +
Sbjct: 74 ITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEI--NQNCDDVCRILVGNKNDDPERKVV 131
Query: 131 SK---QALVDQLGLESITDREVCCYMISCKDSINIDAV 165
Q+G++ E S K+++N++ +
Sbjct: 132 ETEDAYKFAGQMGIQLF---ET-----SAKENVNVEEM 161
|
| >2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8 Length = 192 | Back alignment and structure |
|---|
Score = 76.1 bits (188), Expect = 7e-18
Identities = 44/169 (26%), Positives = 71/169 (42%), Gaps = 28/169 (16%)
Query: 9 FKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVG--FNMRKVTKGNVTIKL--WDL 64
K + L+G GK+S+V + ++ PT+G F + V GN K WD
Sbjct: 24 LK----VCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDT 79
Query: 65 GGQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKI 124
GQ RF ++ Y RG +A + V D +DS + + EL I + + GNK
Sbjct: 80 AGQERFHSLAPMYYRGSAAAVIVYDITKQDSFYTLKKWVKELKEHGP-ENIVMAIAGNKC 138
Query: 125 D--------KSEALSKQALVDQLGLESITDREVCCYMISCKDSINIDAV 165
D +A + + +G + E S K++INI+ +
Sbjct: 139 DLSDIREVPLKDA---KEYAESIGAIVV---ET-----SAKNAINIEEL 176
|
| >1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A* Length = 170 | Back alignment and structure |
|---|
Score = 75.2 bits (186), Expect = 8e-18
Identities = 49/160 (30%), Positives = 75/160 (46%), Gaps = 14/160 (8%)
Query: 9 FKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVG--FNMRKVTKGNVTIKL--WDL 64
FK L L+G GK+SLV G + E T+G F + V + T+K WD
Sbjct: 7 FK----LVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDT 62
Query: 65 GGQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKI 124
GQ R+ ++ Y RG A + V D + +S A++ + EL + S I + + GNK
Sbjct: 63 AGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQAS-PNIVIALSGNKA 121
Query: 125 DKSEALSKQALVDQLGLESITDREVCCYM-ISCKDSINID 163
D L+ + VD +S D +M S K S+N++
Sbjct: 122 D----LANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVN 157
|
| >2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens} Length = 201 | Back alignment and structure |
|---|
Score = 75.8 bits (187), Expect = 9e-18
Identities = 49/167 (29%), Positives = 73/167 (43%), Gaps = 23/167 (13%)
Query: 9 FKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVG--FNMRKVTKGNVTIKL--WDL 64
FK L L+G + GKT +V TG +SE T+G F M+ + +KL WD
Sbjct: 30 FK----LVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDT 85
Query: 65 GGQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKI 124
GQ RFRT+ + Y R + + D R S + ++ S I L++GNK
Sbjct: 86 AGQERFRTITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYAG-SNIVQLLIGNKS 144
Query: 125 DKSE--ALSK---QALVDQLGLESITDREVCCYM-ISCKDSINIDAV 165
D SE +S Q+L + + + S KDS N++
Sbjct: 145 DLSELREVSLAEAQSLAEHYDILC--------AIETSAKDSSNVEEA 183
|
| >1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A* Length = 170 | Back alignment and structure |
|---|
Score = 74.8 bits (185), Expect = 1e-17
Identities = 39/166 (23%), Positives = 70/166 (42%), Gaps = 22/166 (13%)
Query: 9 FKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVG--FNMRKVTKGNVTIKL--WDL 64
K + L+G GK+S++ + ++ PT+G F + V N K WD
Sbjct: 7 LK----VCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDT 62
Query: 65 GGQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKI 124
G RFR + Y RG +A + V D ++ ++ + EL I + + GNK
Sbjct: 63 AGLERFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGP-PSIVVAIAGNKC 121
Query: 125 DKSE--ALSK---QALVDQLGLESITDREVCCYMISCKDSINIDAV 165
D ++ + + + D + + E S K++INI+ +
Sbjct: 122 DLTDVREVMERDAKDYADSIHAIFV---ET-----SAKNAININEL 159
|
| >2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A* Length = 206 | Back alignment and structure |
|---|
Score = 75.0 bits (185), Expect = 2e-17
Identities = 46/164 (28%), Positives = 73/164 (44%), Gaps = 18/164 (10%)
Query: 17 LIGLQNAGKTSLVNTIATGGYSEDMIPTVG--FNMRKVTKGNVTIKL--WDLGGQRRFRT 72
LIG GK+ L+ + Y+ D I T+G F ++ V T+KL WD GQ RFRT
Sbjct: 13 LIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRT 72
Query: 73 MWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSE--AL 130
+ Y RG I+ V D D++S + L E+ + S + L++GNK D + +
Sbjct: 73 ITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYAT-STVLKLLVGNKCDLKDKRVV 131
Query: 131 SK---QALVDQLGLESITDREVCCYMISCKDSINIDAVIDWLIK 171
+ D + + E S DS N++ + +
Sbjct: 132 EYDVAKEFADANKMPFL---ET-----SALDSTNVEDAFLTMAR 167
|
| >2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A* Length = 186 | Back alignment and structure |
|---|
Score = 73.4 bits (181), Expect = 6e-17
Identities = 39/154 (25%), Positives = 63/154 (40%), Gaps = 10/154 (6%)
Query: 17 LIGLQNAGKTSLVNTIATGGYSEDMIPTVG--FNMRKVTKGNVTIKL--WDLGGQRRFRT 72
+IG GK+ L++ + +D T+G F + + G +KL WD GQ RFR+
Sbjct: 15 VIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRS 74
Query: 73 MWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSK 132
+ Y RG + L V D R++ + L + M S I +++ GNK D L
Sbjct: 75 VTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLAS-QNIVIILCGNKKD----LDA 129
Query: 133 QALVDQLGLESITDREVCCYM-ISCKDSINIDAV 165
V L ++ S N++
Sbjct: 130 DREVTFLEASRFAQENELMFLETSALTGENVEEA 163
|
| >2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens} Length = 200 | Back alignment and structure |
|---|
Score = 73.4 bits (181), Expect = 7e-17
Identities = 40/157 (25%), Positives = 65/157 (41%), Gaps = 16/157 (10%)
Query: 17 LIGLQNAGKTSLVNTIATGGYSEDMIPTVG--FNMRKVTKGNVTIKL--WDLGGQRRFRT 72
+IG GK+ L++ + +D T+G F R V G T+KL WD GQ RFR+
Sbjct: 30 VIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERFRS 89
Query: 73 MWERYCRGVSAILYVVDAADRDS---VPIARSELHELLMKPSLSGIPLLVLGNKIDKSEA 129
+ Y RG + L V D R++ + ++ L + I +++ GNK D
Sbjct: 90 VTRSYYRGAAGALLVYDITSRETYNSLAAWLTDARTL----ASPNIVVILCGNKKD---- 141
Query: 130 LSKQALVDQLGLESITDREVCCYM-ISCKDSINIDAV 165
L + V L ++ S N++
Sbjct: 142 LDPEREVTFLEASRFAQENELMFLETSALTGENVEEA 178
|
| >2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 Length = 199 | Back alignment and structure |
|---|
Score = 73.4 bits (181), Expect = 7e-17
Identities = 35/162 (21%), Positives = 64/162 (39%), Gaps = 22/162 (13%)
Query: 15 LSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTK-GNVTIKL--WDLGGQRRFR 71
+ + G GK+SLV G + + IPT+ R+V L D G +F
Sbjct: 11 VVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDTYRQVISCDKSVCTLQITDTTGSHQFP 70
Query: 72 TMWERYCRGVSAILYVVDAADRDS---VPIARSELHELLMKPSLSGIPLLVLGNKIDKSE 128
M A + V + S + + + +K S+ IP++++GNK D+++
Sbjct: 71 AMQRLSISKGHAFILVFSVTSKQSLEELGPIYKLIVQ--IKGSVEDIPVMLVGNKCDETQ 128
Query: 129 -ALSK---QALVDQLGLESITDREVCCYM-ISCKDSINIDAV 165
+ QA+ + C +M S K + N+ +
Sbjct: 129 REVDTREAQAVAQEWK---------CAFMETSAKMNYNVKEL 161
|
| >1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B* Length = 189 | Back alignment and structure |
|---|
Score = 73.0 bits (180), Expect = 7e-17
Identities = 37/117 (31%), Positives = 54/117 (46%), Gaps = 5/117 (4%)
Query: 17 LIGLQNAGKTSLVNTIATGGYSEDMIPTVG--FNMRKVTKGNVTIKL--WDLGGQRRFR- 71
+IG N GKT L G + + T+G F R V IK+ WD GQ RFR
Sbjct: 25 VIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRK 84
Query: 72 TMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSE 128
+M + Y R V A+++V D + S + + E + IP +++GNK D
Sbjct: 85 SMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRS 141
|
| >2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B* Length = 181 | Back alignment and structure |
|---|
Score = 73.0 bits (180), Expect = 8e-17
Identities = 41/160 (25%), Positives = 68/160 (42%), Gaps = 14/160 (8%)
Query: 9 FKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVG--FNMRKVTKGNVTIKL--WDL 64
K L L+G AGK+SLV + E T+G F + + + T+K WD
Sbjct: 13 AK----LVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDT 68
Query: 65 GGQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKI 124
GQ R+ ++ Y RG +A + V D ++ S A+ + EL + + + + + GNK
Sbjct: 69 AGQERYHSLAPMYYRGAAAAIIVFDVTNQASFERAKKWVQELQAQGN-PNMVMALAGNKS 127
Query: 125 DKSEALSKQALVDQLGLESITDREVCCYM-ISCKDSINID 163
D L V ++ +M S K + N+
Sbjct: 128 D----LLDARKVTAEDAQTYAQENGLFFMETSAKTATNVK 163
|
| >2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens} Length = 192 | Back alignment and structure |
|---|
Score = 72.6 bits (179), Expect = 1e-16
Identities = 40/154 (25%), Positives = 66/154 (42%), Gaps = 9/154 (5%)
Query: 17 LIGLQNAGKTSLVNTIATGGYSEDMIPTVG--FNMRKVTKGNVTIKL--WDLGGQRRFRT 72
+IG + GKTSL+ + E TVG F ++ V I+L WD GQ RF +
Sbjct: 31 IIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQERFNS 90
Query: 73 MWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSK 132
+ Y R I+ V D +++ + + S LL++GNK+D +
Sbjct: 91 ITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYAS-EDAELLLVGNKLDCE---TD 146
Query: 133 QALVDQLGLESITDREVCCYM-ISCKDSINIDAV 165
+ + Q G + + S KD+ N+D +
Sbjct: 147 REITRQQGEKFAQQITGMRFCEASAKDNFNVDEI 180
|
| >3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} Length = 331 | Back alignment and structure |
|---|
Score = 74.7 bits (183), Expect = 2e-16
Identities = 32/158 (20%), Positives = 61/158 (38%), Gaps = 19/158 (12%)
Query: 17 LIGLQNAGKTSLVNTIATGGYSED---MIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTM 73
L+G++ GK+S+ + D + T ++ + + + +L GQ +
Sbjct: 4 LMGVRRCGKSSICKVVFHNMQPLDTLYLESTSNPSLEHF-STLIDLAVMELPGQLNYFEP 62
Query: 74 W---ERYCRGVSAILYVVDAADRDSVPIARSELHELLMKP--SLSGIPLLVLGNKIDKSE 128
ER + V A++YV+D+ D I L ++ I + VL +K+D
Sbjct: 63 SYDSERLFKSVGALVYVIDSQDEYINAITN--LAMIIEYAYKVNPSINIEVLIHKVDGLS 120
Query: 129 ALSK--------QALVDQLGLESITDREVCCYMISCKD 158
K Q ++L + +V Y+ S D
Sbjct: 121 EDFKVDAQRDIMQRTGEELLELGLDGVQVSFYLTSIFD 158
|
| >2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A* Length = 191 | Back alignment and structure |
|---|
Score = 72.2 bits (178), Expect = 2e-16
Identities = 39/157 (24%), Positives = 64/157 (40%), Gaps = 16/157 (10%)
Query: 17 LIGLQNAGKTSLVNTIATGGYSEDMIPTVG--FNMRKVTKGNVTIKL--WDLGGQRRFRT 72
+IG GK+ L+ + T+G F R V IKL WD GQ FR+
Sbjct: 26 IIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRS 85
Query: 73 MWERYCRGVSAILYVVDAADRDS---VPIARSELHELLMKPSLSGIPLLVLGNKIDKSEA 129
+ Y RG + L V D R++ + + + S S + ++++GNK D
Sbjct: 86 ITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQH----SSSNMVIMLIGNKSD---- 137
Query: 130 LSKQALVDQLGLESITDREVCCYM-ISCKDSINIDAV 165
L + V + E+ +M S K + N++
Sbjct: 138 LESRRDVKREEGEAFAREHGLIFMETSAKTACNVEEA 174
|
| >2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 Length = 172 | Back alignment and structure |
|---|
Score = 70.6 bits (174), Expect = 4e-16
Identities = 39/163 (23%), Positives = 63/163 (38%), Gaps = 23/163 (14%)
Query: 15 LSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTK-GNVTIKL--WDLGGQRRFR 71
+++ G GK+SLV G + E IPTV R+V L D G +F
Sbjct: 6 VAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQVISCDKSICTLQITDTTGSHQFP 65
Query: 72 TMWERYCRGVSAILYVVDAADRDS---VPIARSELHELLMKPSLSGIPLLVLGNKIDKSE 128
M A + V R S + ++ E +K + IP++++GNK D+S
Sbjct: 66 AMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICE--IKGDVESIPIMLVGNKCDESP 123
Query: 129 --ALSK---QALVDQLGLESITDREVCCYM-ISCKDSINIDAV 165
+ +AL C +M S K + N+ +
Sbjct: 124 SREVQSSEAEALARTWK---------CAFMETSAKLNHNVKEL 157
|
| >2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 Length = 180 | Back alignment and structure |
|---|
Score = 70.3 bits (173), Expect = 7e-16
Identities = 44/157 (28%), Positives = 71/157 (45%), Gaps = 19/157 (12%)
Query: 17 LIGLQNAGKTSLVNTIATGGYSED-MIPTVG--FNMRKVTKGNVTIKL--WDLGGQRRFR 71
L+G GKT L+ G + I TVG F + + V +KL WD GQ RFR
Sbjct: 15 LVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFR 74
Query: 72 TMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSE--A 129
++ Y R A+L + D ++ S ++ L E+ + L++LGNK+D +
Sbjct: 75 SVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQ-HDVALMLLGNKVDSAHERV 133
Query: 130 LSK---QALVDQLGLESITDREVCCYMISCKDSINID 163
+ + + L + GL + E S K +N+D
Sbjct: 134 VKREDGEKLAKEYGLPFM---ET-----SAKTGLNVD 162
|
| >3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum} Length = 535 | Back alignment and structure |
|---|
Score = 73.1 bits (179), Expect = 8e-16
Identities = 34/173 (19%), Positives = 63/173 (36%), Gaps = 20/173 (11%)
Query: 11 QEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVT------------KGNVT 58
QE+++ LIG AGKTSL+ + + T G N+
Sbjct: 40 QEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECL 99
Query: 59 IKLWDLGGQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLL 118
WD GGQ + + S + ++D+ + + + P++
Sbjct: 100 FHFWDFGGQEIMHASHQFFMTRSSVYMLLLDSRTDSNKHYWLRHIEKY-----GGKSPVI 154
Query: 119 VLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCKDSINIDAVIDWLIK 171
V+ NKID++ + + E E + ISCK+ ++++ L
Sbjct: 155 VVMNKIDENP---SYNIEQKKINERFPAIENRFHRISCKNGDGVESIAKSLKS 204
|
| >2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A* Length = 217 | Back alignment and structure |
|---|
Score = 70.1 bits (172), Expect = 2e-15
Identities = 35/174 (20%), Positives = 67/174 (38%), Gaps = 27/174 (15%)
Query: 17 LIGLQNAGKTSLVNTIATGGYSEDMIPTVG--FNMRKVT----------KGNVTIKL--W 62
+G GKT+ + ++ I TVG F ++V + L W
Sbjct: 30 ALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLW 89
Query: 63 DLGGQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGN 122
D GQ RFR++ + R L + D + S R+ + +L ++++GN
Sbjct: 90 DTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGN 149
Query: 123 KIDKSE--ALSK---QALVDQLGLESITDREVCCYMISCKDSINIDAVIDWLIK 171
K D + +++ + L D+ G+ E S N++ ++ L+
Sbjct: 150 KADLPDQREVNERQARELADKYGIPYF---ET-----SAATGQNVEKAVETLLD 195
|
| >2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ... Length = 166 | Back alignment and structure |
|---|
Score = 67.9 bits (167), Expect = 5e-15
Identities = 31/159 (19%), Positives = 57/159 (35%), Gaps = 17/159 (10%)
Query: 15 LSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTK-GNVTIKL--WDLGGQRRFR 71
L ++G GK++L + + ++ PT+ + RK T L D GQ +
Sbjct: 6 LVVVGAGGVGKSALTIQLIQNHFVDECDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYS 65
Query: 72 TMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSE-AL 130
M ++Y R L V + S ++ +P++++GNK D + +
Sbjct: 66 AMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDLAARTV 125
Query: 131 SK---QALVDQLGLESITDREVCCYM-ISCKDSINIDAV 165
Q L G Y+ S K ++
Sbjct: 126 ESRQAQDLARSYG---------IPYIETSAKTRQGVEDA 155
|
| >3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens} Length = 227 | Back alignment and structure |
|---|
Score = 68.9 bits (168), Expect = 6e-15
Identities = 20/122 (16%), Positives = 40/122 (32%), Gaps = 9/122 (7%)
Query: 62 WDLGGQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLM---KPSLSGIPLL 118
G + ++ C V +YV +A H + M SG PLL
Sbjct: 107 DQQGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHEWQDEFSHIMAMTDPAFGSSGRPLL 166
Query: 119 VLG-NKIDKSEALSKQALVDQLGLESITDREVCCYMISC--KDSINIDAVIDWLIKHSKT 175
VL + + L +L L + + + + I+W+++ ++
Sbjct: 167 VLSCISQGDVKRMPCFYLAHELHLNLL-NHP--WLVQDTEAETLTGFLNGIEWILEEVES 223
Query: 176 AK 177
+
Sbjct: 224 KR 225
|
| >3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A* Length = 195 | Back alignment and structure |
|---|
Score = 68.4 bits (168), Expect = 6e-15
Identities = 40/174 (22%), Positives = 68/174 (39%), Gaps = 27/174 (15%)
Query: 17 LIGLQNAGKTSLVNTIATGGYSEDMIPTVG--FNMRKVT----------KGNVTIKL--W 62
+G GKTS++ G ++ I TVG F ++V I L W
Sbjct: 16 ALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLW 75
Query: 63 DLGGQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGN 122
D G RFR++ + R L + D + S R+ + +L M +++ GN
Sbjct: 76 DTAGLERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPDIVLCGN 135
Query: 123 KIDKSE--ALSK---QALVDQLGLESITDREVCCYMISCKDSINIDAVIDWLIK 171
K D + A+ + + L ++ G+ E S + NI I+ L+
Sbjct: 136 KSDLEDQRAVKEEEARELAEKYGIPYF---ET-----SAANGTNISHAIEMLLD 181
|
| >3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A* Length = 190 | Back alignment and structure |
|---|
Score = 67.6 bits (166), Expect = 1e-14
Identities = 30/159 (18%), Positives = 56/159 (35%), Gaps = 17/159 (10%)
Query: 15 LSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRK-VTKGNVTIKL--WDLGGQRRFR 71
L ++G GK++L + + ++ PT+ + RK V T L D GQ +
Sbjct: 24 LVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYS 83
Query: 72 TMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSE-AL 130
M ++Y R L V + S ++ +P++++GNK D +
Sbjct: 84 AMRDQYMRTGEGFLCVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDLPTRTV 143
Query: 131 SK---QALVDQLGLESITDREVCCYM-ISCKDSINIDAV 165
L G ++ S K ++
Sbjct: 144 DTKQAHELAKSYG---------IPFIETSAKTRQGVEDA 173
|
| >3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens} Length = 195 | Back alignment and structure |
|---|
Score = 67.6 bits (166), Expect = 1e-14
Identities = 30/162 (18%), Positives = 53/162 (32%), Gaps = 20/162 (12%)
Query: 15 LSLIGLQNAGKTSLVNTIATGGYSEDMIPTVG--FNMRKVTKGNVTIKL--WDLGGQRRF 70
+ L+G GK++L T P R++ + L +D+ Q
Sbjct: 26 VMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTLVVYDIWEQGDA 85
Query: 71 R-TMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSE- 128
+ + + A L V DR S L L +P++++GNK D +
Sbjct: 86 GGWLRDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARS 145
Query: 129 -ALSK---QALVDQLGLESITDREVCCYM-ISCKDSINIDAV 165
+S + L L C ++ S N +
Sbjct: 146 REVSLEEGRHLAGTLS---------CKHIETSAALHHNTREL 178
|
| >2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A* Length = 181 | Back alignment and structure |
|---|
Score = 67.2 bits (165), Expect = 1e-14
Identities = 34/160 (21%), Positives = 55/160 (34%), Gaps = 18/160 (11%)
Query: 15 LSLIGLQNAGKTSLVNTIATGGYSEDMIPTVG-FNMRKVTKGNVTIKL--WDLGGQRRFR 71
L ++G GK++L + D PT+ + + + +L D GQ F
Sbjct: 12 LVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYTKICSVDGIPARLDILDTAGQEEFG 71
Query: 72 TMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSE--A 129
M E+Y R L V DR S ++L P++++GNK D
Sbjct: 72 AMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQRQ 131
Query: 130 LSK---QALVDQLGLESITDREVCCYM-ISCKDSINIDAV 165
+ + A Y S K +N+D
Sbjct: 132 VPRSEASAFGASHH---------VAYFEASAKLRLNVDEA 162
|
| >1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R* Length = 167 | Back alignment and structure |
|---|
Score = 66.3 bits (163), Expect = 2e-14
Identities = 32/160 (20%), Positives = 67/160 (41%), Gaps = 18/160 (11%)
Query: 15 LSLIGLQNAGKTSLVNTIATGGYSEDMIPTVG-FNMRKVTKGNVTIKL--WDLGGQRRFR 71
+ ++G GK++L TG + E PT+ F +++ + L D G +F
Sbjct: 6 VVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFA 65
Query: 72 TMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSE--A 129
+M + Y + + V ++ S + +++ +P++++GNK+D
Sbjct: 66 SMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESERE 125
Query: 130 LSK---QALVDQLGLESITDREVCCYM-ISCKDSINIDAV 165
+S +AL ++ G C +M S K +D +
Sbjct: 126 VSSSEGRALAEEWG---------CPFMETSAKSKTMVDEL 156
|
| >3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} Length = 184 | Back alignment and structure |
|---|
Score = 66.8 bits (164), Expect = 2e-14
Identities = 32/165 (19%), Positives = 66/165 (40%), Gaps = 23/165 (13%)
Query: 11 QEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTKGNVTIKL--WDLGGQR 68
E+++ ++G ++GK++LV+ TG Y ++ P G +++ + L D GG
Sbjct: 19 PELKVGIVGNLSSGKSALVHRYLTGTYVQEESPEGGRFKKEIVVDGQSYLLLIRDEGGPP 78
Query: 69 RFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSE 128
++ V A+++V D S + L + S +P++++G + S
Sbjct: 79 EL-----QFAAWVDAVVFVFSLEDEISFQTVYNYFLRLCSFRNASEVPMVLVGTQDAISA 133
Query: 129 ALSK-------QALVDQLGLESITDREVCCYM-ISCKDSINIDAV 165
A + + L L C Y +N++ V
Sbjct: 134 ANPRVIDDSRARKLSTDLK--------RCTYYETCATYGLNVERV 170
|
| >3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} Length = 169 | Back alignment and structure |
|---|
Score = 66.4 bits (163), Expect = 2e-14
Identities = 29/165 (17%), Positives = 50/165 (30%), Gaps = 26/165 (15%)
Query: 15 LSLIGLQNAGKTSLVNTIATGGYSEDMIPTVG--FNMRKVTKGNVTIKL--WDLGGQRRF 70
+ L+G GK++L T R++ + L +D+ Q
Sbjct: 5 VMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQGDA 64
Query: 71 R-TMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKID---- 125
+ + + A L V DR S L L +P++++GNK D
Sbjct: 65 GGWLQDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARS 124
Query: 126 ----KSEALSKQALVDQLGLESITDREVCCYM-ISCKDSINIDAV 165
E + L L C ++ S N +
Sbjct: 125 REVSLEEG---RHLAGTLS---------CKHIETSAALHHNTREL 157
|
| >4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A* Length = 189 | Back alignment and structure |
|---|
Score = 65.7 bits (161), Expect = 5e-14
Identities = 31/159 (19%), Positives = 56/159 (35%), Gaps = 17/159 (10%)
Query: 15 LSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTK-GNVTIKL--WDLGGQRRFR 71
L ++G GK++L + + ++ PT+ + RK T L D GQ +
Sbjct: 7 LVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYS 66
Query: 72 TMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSE-AL 130
M ++Y R L V + S ++ +P++++GNK D +
Sbjct: 67 AMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLPSRTV 126
Query: 131 SK---QALVDQLGLESITDREVCCYM-ISCKDSINIDAV 165
Q L G ++ S K +D
Sbjct: 127 DTKQAQDLARSYG---------IPFIETSAKTRQGVDDA 156
|
| >2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C Length = 208 | Back alignment and structure |
|---|
Score = 65.8 bits (161), Expect = 6e-14
Identities = 23/119 (19%), Positives = 47/119 (39%), Gaps = 10/119 (8%)
Query: 17 LIGLQNAGKTSLVN--TIATGGYSEDMIPTVG--FNMRKVTKGNVTIKL----WDLGGQR 68
++G GK++L++ T + +D T G + VT + T+ + D G
Sbjct: 25 VVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTAGSD 84
Query: 69 RFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHEL--LMKPSLSGIPLLVLGNKID 125
++ +Y GV + V D + +S ++ L + +++ NK D
Sbjct: 85 LYKEQISQYWNGVYYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLVANKTD 143
|
| >3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* Length = 181 | Back alignment and structure |
|---|
Score = 65.2 bits (160), Expect = 6e-14
Identities = 30/160 (18%), Positives = 60/160 (37%), Gaps = 18/160 (11%)
Query: 15 LSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTK-GNVTIKL--WDLGGQRRFR 71
++++G ++ GK+SL G + + PT+ K+ L D GQ +
Sbjct: 9 IAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITVNGQEYHLQLVDTAGQDEYS 68
Query: 72 TMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSE--A 129
+ Y ++ + V S + + +LL IP++++GNK D
Sbjct: 69 IFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHMERV 128
Query: 130 LSK---QALVDQLGLESITDREVCCYM-ISCKDSINIDAV 165
+S +AL + ++ S K++ V
Sbjct: 129 ISYEEGKALAESWN---------AAFLESSAKENQTAVDV 159
|
| >3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens} Length = 201 | Back alignment and structure |
|---|
Score = 65.7 bits (161), Expect = 6e-14
Identities = 36/160 (22%), Positives = 62/160 (38%), Gaps = 18/160 (11%)
Query: 15 LSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRK-VTKGNVTIKL--WDLGGQRRFR 71
+ ++G + GKTSL + G +SE PTV K VT G L D GQ +
Sbjct: 27 VVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTYSKIVTLGKDEFHLHLVDTAGQDEYS 86
Query: 72 TMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSE--A 129
+ + GV + V S + S +L + +P++++GNK D S
Sbjct: 87 ILPYSFIIGVHGYVLVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVGNKADLSPERE 146
Query: 130 LSK---QALVDQLGLESITDREVCCYM-ISCKDSINIDAV 165
+ + L + G +M S +++ +
Sbjct: 147 VQAVEGKKLAESWG---------ATFMESSARENQLTQGI 177
|
| >2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A* Length = 187 | Back alignment and structure |
|---|
Score = 64.9 bits (159), Expect = 1e-13
Identities = 34/163 (20%), Positives = 58/163 (35%), Gaps = 24/163 (14%)
Query: 15 LSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTK-GNVTIKL--WDLGGQRRFR 71
+ ++G GK++L + ED PT + RK +++ D GQ +
Sbjct: 21 VIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYA 80
Query: 72 TMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKID------ 125
+ + Y R L V + +S ++L +P L++GNK D
Sbjct: 81 AIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQ 140
Query: 126 --KSEALSKQALVDQLGLESITDREVCCYM-ISCKDSINIDAV 165
EA + +Q Y+ S K N+D V
Sbjct: 141 VSVEEA---KNRAEQWN---------VNYVETSAKTRANVDKV 171
|
| >1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A* Length = 168 | Back alignment and structure |
|---|
Score = 64.0 bits (157), Expect = 1e-13
Identities = 35/163 (21%), Positives = 58/163 (35%), Gaps = 24/163 (14%)
Query: 15 LSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTK-GNVTIKL--WDLGGQRRFR 71
+ ++G GK++L + ED PT + RK +++ D GQ +
Sbjct: 7 VIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYA 66
Query: 72 TMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKID------ 125
+ + Y R L V + +S ++L +P L++GNK D
Sbjct: 67 AIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQ 126
Query: 126 --KSEALSKQALVDQLGLESITDREVCCYM-ISCKDSINIDAV 165
EA + DQ Y+ S K N+D V
Sbjct: 127 VSVEEA---KNRADQWN---------VNYVETSAKTRANVDKV 157
|
| >2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens} Length = 206 | Back alignment and structure |
|---|
Score = 64.2 bits (157), Expect = 3e-13
Identities = 34/163 (20%), Positives = 58/163 (35%), Gaps = 24/163 (14%)
Query: 15 LSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTK-GNVTIKL--WDLGGQRRFR 71
+ ++G GK++L + ED PT + RK +++ D GQ +
Sbjct: 17 VIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYA 76
Query: 72 TMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKID------ 125
+ + Y R L V + +S ++L +P L++GNK D
Sbjct: 77 AIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQ 136
Query: 126 --KSEALSKQALVDQLGLESITDREVCCYM-ISCKDSINIDAV 165
EA + +Q Y+ S K N+D V
Sbjct: 137 VSVEEA---KNRAEQWN---------VNYVETSAKTRANVDKV 167
|
| >3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A* Length = 166 | Back alignment and structure |
|---|
Score = 62.1 bits (152), Expect = 8e-13
Identities = 29/160 (18%), Positives = 51/160 (31%), Gaps = 19/160 (11%)
Query: 15 LSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTK-GNVTIKL--WDLGGQRRFR 71
+ L+G GK++L I G G + L +D+ Q R
Sbjct: 5 VLLLGAPGVGKSALA-RIFGGVEDGPEAEAAGHTYDRSIVVDGEEASLMVYDIWEQDGGR 63
Query: 72 TMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSE--A 129
+ A + V D+ S A +L +P++++GNK D
Sbjct: 64 WLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSRE 123
Query: 130 LSK---QALVDQLGLESITDREVCCYM-ISCKDSINIDAV 165
+S +A C ++ S N+ A+
Sbjct: 124 VSVDEGRACAVVFD---------CKFIETSAALHHNVQAL 154
|
| >3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A* Length = 183 | Back alignment and structure |
|---|
Score = 62.2 bits (152), Expect = 1e-12
Identities = 33/164 (20%), Positives = 58/164 (35%), Gaps = 25/164 (15%)
Query: 15 LSLIGLQNAGKTSLVNTIATGGYSEDMIPTVG-FNMRKVTKGNVTIKL--WDLGGQRRFR 71
L ++G GK++L + +D PT+ ++ N L D GQ F
Sbjct: 21 LVVVGDGGVGKSALTIQFFQKIFVDDYDPTIEDSYLKHTEIDNQWAILDVLDTAGQEEFS 80
Query: 72 TMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKID------ 125
M E+Y R L V D+ S +L P++++ NK+D
Sbjct: 81 AMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRK 140
Query: 126 --KSEALSKQALVDQLGLESITDREVCCYM-ISCKDS-INIDAV 165
+ + + + + Y+ S KD +N+D
Sbjct: 141 VTRDQG---KEMATKYN---------IPYIETSAKDPPLNVDKT 172
|
| >3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens} Length = 312 | Back alignment and structure |
|---|
Score = 62.0 bits (150), Expect = 5e-12
Identities = 18/87 (20%), Positives = 28/87 (32%), Gaps = 4/87 (4%)
Query: 63 DLGGQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLM---KPSLSGIPLLV 119
G + ++ C V +YV +A H + M SG PLLV
Sbjct: 193 QQGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHEWQDEFSHIMAMTDPAFGSSGRPLLV 252
Query: 120 LG-NKIDKSEALSKQALVDQLGLESIT 145
L + + L +L L +
Sbjct: 253 LSCISQGDVKRMPCFYLAHELHLNLLN 279
|
| >1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D* Length = 167 | Back alignment and structure |
|---|
Score = 59.8 bits (146), Expect = 5e-12
Identities = 34/160 (21%), Positives = 61/160 (38%), Gaps = 17/160 (10%)
Query: 15 LSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRK-VTKGNVTIKL--WDLGGQRRFR 71
L ++G GK++L G + E PT+ + RK V L D G +F
Sbjct: 6 LVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDCQQCMLEILDTAGTEQFT 65
Query: 72 TMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSE--A 129
M + Y + V + + + ++L +P++++GNK D +
Sbjct: 66 AMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERV 125
Query: 130 LSK---QALVDQLGLESITDREVCCYM-ISCKDSINIDAV 165
+ K Q L Q C ++ S K IN++ +
Sbjct: 126 VGKEQGQNLARQWCN--------CAFLESSAKSKINVNEI 157
|
| >2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens} Length = 175 | Back alignment and structure |
|---|
Score = 58.3 bits (142), Expect = 2e-11
Identities = 33/165 (20%), Positives = 52/165 (31%), Gaps = 26/165 (15%)
Query: 15 LSLIGLQNAGKTSLVNTIATGGYSEDMIPT-VGFNMRKVTKGNVTIKL--WDLGGQRRFR 71
+ L+G GKTSL + A + R +T L D +
Sbjct: 7 VVLLGDPGVGKTSLASLFAGKQERDLHEQLGEDVYERTLTVDGEDTTLVVVDTWEAEKLD 66
Query: 72 --TMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKID---- 125
E +G SA + V ADR S A +L +P++++GNK D
Sbjct: 67 KSWSQESCLQGGSAYVIVYSIADRGSFESASELRIQLRRTHQADHVPIILVGNKADLARC 126
Query: 126 ----KSEALSKQALVDQLGLESITDREVCCYM-ISCKDSINIDAV 165
E +A C ++ S N+ +
Sbjct: 127 REVSVEEG---RACAVVFD---------CKFIETSATLQHNVAEL 159
|
| >3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens} Length = 187 | Back alignment and structure |
|---|
Score = 58.0 bits (141), Expect = 3e-11
Identities = 43/177 (24%), Positives = 68/177 (38%), Gaps = 30/177 (16%)
Query: 6 SLFFKQEME--LSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTK-GNVTIKL- 61
+L+F+ +E L+++G + AGK++L T + + P + + + L
Sbjct: 13 NLYFQGPLEVNLAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTYSSEETVDHQPVHLR 72
Query: 62 -WDLGGQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARS--ELHELLMKPSLSGIPLL 118
D R ERY A L V R S + S EL L K + IP L
Sbjct: 73 VMDTADLDTPRNC-ERYLNWAHAFLVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPAL 131
Query: 119 VLGNKID--------KSEALSKQALVDQLGLESITDREVCCYM-ISCKDSI-NIDAV 165
+LGNK+D K+E AL + G C + +S ++ V
Sbjct: 132 LLGNKLDMAQYRQVTKAEG---VALAGRFG---------CLFFEVSACLDFEHVQHV 176
|
| >2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 Length = 196 | Back alignment and structure |
|---|
Score = 56.9 bits (138), Expect = 1e-10
Identities = 34/167 (20%), Positives = 57/167 (34%), Gaps = 26/167 (15%)
Query: 12 EMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTK-GNVTIKL--WDLGGQR 68
E++L++ G GK++LV T + + PT+ R + + + D GQ
Sbjct: 28 EVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQATIDDEVVSMEILDTAGQE 87
Query: 69 RFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKID--- 125
E + R + V D DR S + L + L+++GNK D
Sbjct: 88 DTI-QREGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDH 146
Query: 126 -----KSEALSKQALVDQLGLESITDREVCCYM-ISCKDS-INIDAV 165
E + L +L C + S NI +
Sbjct: 147 SRQVSTEEG---EKLATELA---------CAFYECSACTGEGNITEI 181
|
| >3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum} Length = 208 | Back alignment and structure |
|---|
Score = 56.8 bits (137), Expect = 1e-10
Identities = 37/191 (19%), Positives = 74/191 (38%), Gaps = 50/191 (26%)
Query: 17 LIGLQNAGKTSLVNTIATGGYSEDMIPTVG--FNMRKVTKGNVTIK-------------- 60
L+G + GK+S+V + + E+ T+G F V ++ IK
Sbjct: 12 LLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEKNNNINSI 71
Query: 61 -------------------------LWDLGGQRRFRTMWERYCRGVSAILYVVDAADRDS 95
+WD GQ R+ ++ Y RG + + V D ++ ++
Sbjct: 72 NDDNNVIITNQHNNYNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISNSNT 131
Query: 96 VPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYM-I 154
+ A++ +++L + ++++ NKID +K VD L ++ ++
Sbjct: 132 LDRAKTWVNQLKISS---NYIIILVANKID----KNKFQ-VDILEVQKYAQDNNLLFIQT 183
Query: 155 SCKDSINIDAV 165
S K NI +
Sbjct: 184 SAKTGTNIKNI 194
|
| >1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B* Length = 184 | Back alignment and structure |
|---|
Score = 55.9 bits (135), Expect = 2e-10
Identities = 23/113 (20%), Positives = 48/113 (42%), Gaps = 6/113 (5%)
Query: 17 LIGLQNAGKTSLVNTIATGGYSEDMIPTVGFN---MRKVTKGNVTIKLWDLGGQRRFRTM 73
++G GKT+L++ A + E+ +PTV N ++ + + LWD G + +
Sbjct: 12 VVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNV 71
Query: 74 WERYCRGVSAILYVVDAADRDSVPIARSE-LHELLMKPSLSGIPLLVLGNKID 125
A+L D + +++ + E+ + +L++G K D
Sbjct: 72 RPLSYPDSDAVLICFDISRPETLDSVLKKWKGEI--QEFCPNTKMLLVGCKSD 122
|
| >2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A Length = 178 | Back alignment and structure |
|---|
Score = 54.9 bits (133), Expect = 4e-10
Identities = 31/164 (18%), Positives = 61/164 (37%), Gaps = 17/164 (10%)
Query: 10 KQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRK-VTKGNVTIKL--WDLGG 66
E+ L ++G +GK+SL++ TG Y + + T +K + T + + G
Sbjct: 5 IPELRLGVLGDARSGKSSLIHRFLTGSY-QVLEKTESEQYKKEMLVDGQTHLVLIREEAG 63
Query: 67 QRRFRTMWERYCRGVSAILYVVDAADRDS---VPIARSELHELLMKPSLSG-IPLLVLGN 122
+ + A+++V D +S V +L L + + L+ +
Sbjct: 64 APDAK-----FSGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQD 118
Query: 123 KIDKSEALSKQALVDQLGLESITDREVCCYM-ISCKDSINIDAV 165
+I S + + D D + C Y +N+D V
Sbjct: 119 RISASS---PRVVGDARARALXADMKRCSYYETXATYGLNVDRV 159
|
| >3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* Length = 194 | Back alignment and structure |
|---|
Score = 53.9 bits (130), Expect = 1e-09
Identities = 33/175 (18%), Positives = 64/175 (36%), Gaps = 22/175 (12%)
Query: 9 FKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRK---VTKGNVTIKLWDLG 65
K+ +++ ++G GKT L+ + G +PTV N + LWD
Sbjct: 20 GKKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFSHVMKYKNEEFILHLWDTA 79
Query: 66 GQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSE-LHELLMKPSLSGIPLLVLGNKI 124
GQ + + +L +R S ++ E+ K + +++G K+
Sbjct: 80 GQEEYDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEI--KHYIDTAKTVLVGLKV 137
Query: 125 D----KSEALSK---QALVDQLGLESITDREVCCYM-ISCKDSINIDAVIDWLIK 171
D S+ ++K L +LG Y+ S I ++ V + +
Sbjct: 138 DLRKDGSDDVTKQEGDDLCQKLGC--------VAYIEASSVAKIGLNEVFEKSVD 184
|
| >3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A* Length = 214 | Back alignment and structure |
|---|
Score = 52.2 bits (125), Expect = 6e-09
Identities = 26/113 (23%), Positives = 46/113 (40%), Gaps = 6/113 (5%)
Query: 17 LIGLQNAGKTSLVNTIATGGYSEDMIPTVGFN---MRKVTKGNVTIKLWDLGGQRRFRTM 73
L+G GKT+++ +A Y E +PTV N + + V + LWD G + +
Sbjct: 32 LVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTACLETEEQRVELSLWDTSGSPYYDNV 91
Query: 74 WERYCRGVSAILYVVDAADRDSVP-IARSELHELLMKPSLSGIPLLVLGNKID 125
A+L D + ++V + E+ +L++G K D
Sbjct: 92 RPLCYSDSDAVLLCFDISRPETVDSALKKWRTEI--LDYCPSTRVLLIGCKTD 142
|
| >3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C Length = 182 | Back alignment and structure |
|---|
Score = 51.2 bits (123), Expect = 1e-08
Identities = 41/175 (23%), Positives = 69/175 (39%), Gaps = 18/175 (10%)
Query: 11 QEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFN---MRKVTKGNVTIKLWDLGGQ 67
+ ++ +G GKT L+ + + + D +PTV N V V + LWD GQ
Sbjct: 7 RFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGATVNLGLWDTAGQ 66
Query: 68 RRFRTMWERYCRGVSAILYVVDAADRDSVPIARSE-LHELLMKPSLSGIPLLVLGNKIDK 126
+ + RG + + S + + EL K G+P++++G K+D
Sbjct: 67 EDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPEL--KHYAPGVPIVLVGTKLDL 124
Query: 127 SEALSKQALVDQLGLESITDRE---------VCCYM-ISCKDSINIDAVIDWLIK 171
+ KQ +D G IT + Y+ S K N+ V D I+
Sbjct: 125 RD--DKQFFIDHPGAVPITTVQGEELKKLIGAPAYIECSSKSQENVKGVFDAAIR 177
|
| >3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens} Length = 204 | Back alignment and structure |
|---|
Score = 51.3 bits (123), Expect = 1e-08
Identities = 35/183 (19%), Positives = 60/183 (32%), Gaps = 26/183 (14%)
Query: 10 KQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMR---KVTKGNVTIKLWDLGG 66
Q ++ ++G GKT L+ + T + + IPTV N V V + LWD G
Sbjct: 28 GQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAG 87
Query: 67 QRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMK--PSLS----GIPLLVL 120
Q + + L S + K P + P++++
Sbjct: 88 QEDYDRLRPLSYPQTDVFLICFSLVSPAS-------FENVRAKWYPEVRHHCPNTPIILV 140
Query: 121 GNKIDKSEALSKQALVDQLGLESITDREV---------CCYM-ISCKDSINIDAVIDWLI 170
G K+D + + + L IT + Y+ S + V D I
Sbjct: 141 GTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAI 200
Query: 171 KHS 173
+
Sbjct: 201 RAV 203
|
| >2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8 Length = 194 | Back alignment and structure |
|---|
Score = 51.0 bits (122), Expect = 1e-08
Identities = 31/174 (17%), Positives = 57/174 (32%), Gaps = 26/174 (14%)
Query: 17 LIGLQNAGKTSLVNTIATGGYSEDMIPTVGFN---MRKVTKGNVTIKLWDLGGQRRFRTM 73
++G GKT L+ + A + E+ +PTV + V + L+D GQ + +
Sbjct: 23 VVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRL 82
Query: 74 WERYCRGVSAILYVVDAADRDSVPIARSELHELLMK--PSLS----GIPLLVLGNKIDKS 127
L + S + + P L +P L++G +ID
Sbjct: 83 RPLSYPMTDVFLICFSVVNPAS-------FQNVKEEWVPELKEYAPNVPFLLIGTQIDLR 135
Query: 128 EALSKQALVDQLGLESITDRE----------VCCYMISCKDSINIDAVIDWLIK 171
+ A ++ + + I + C S + V D I
Sbjct: 136 DDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVECSALTQKGLKTVFDEAII 189
|
| >2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ... Length = 201 | Back alignment and structure |
|---|
Score = 50.5 bits (121), Expect = 2e-08
Identities = 28/113 (24%), Positives = 46/113 (40%), Gaps = 6/113 (5%)
Query: 17 LIGLQNAGKTSLVNTIATGGYSEDMIPTVGFN---MRKVTKGNVTIKLWDLGGQRRFRTM 73
++G GKT L+ + + E +PTV N +V V + LWD GQ + +
Sbjct: 30 IVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYIADIEVDGKQVELALWDTAGQEDYDRL 89
Query: 74 WERYCRGVSAILYVVDAADRDSVPIARSE-LHELLMKPSLSGIPLLVLGNKID 125
IL DS+ + E+ K +P++++GNK D
Sbjct: 90 RPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEV--KHFCPNVPIILVGNKKD 140
|
| >1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ... Length = 186 | Back alignment and structure |
|---|
Score = 49.8 bits (119), Expect = 3e-08
Identities = 27/120 (22%), Positives = 47/120 (39%), Gaps = 6/120 (5%)
Query: 10 KQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFN---MRKVTKGNVTIKLWDLGG 66
Q ++ ++G GKT L+ + T + + IPTV N V V + LWD G
Sbjct: 3 PQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAG 62
Query: 67 QRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSE-LHELLMKPSLSGIPLLVLGNKID 125
Q + + L S R++ E+ + P++++G K+D
Sbjct: 63 QEDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEV--RHHCPNTPIILVGTKLD 120
|
| >2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens} Length = 214 | Back alignment and structure |
|---|
Score = 49.4 bits (118), Expect = 6e-08
Identities = 29/119 (24%), Positives = 50/119 (42%), Gaps = 6/119 (5%)
Query: 11 QEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFN---MRKVTKGNVTIKLWDLGGQ 67
+ +++ L+G GKTSL+ A G + E PTV +V V + +WD GQ
Sbjct: 33 RSVKVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFERYMVNLQVKGKPVHLHIWDTAGQ 92
Query: 68 RRFRTMWERYCRGVSAILYVVDAADRDSVPIARSE-LHELLMKPSLSGIPLLVLGNKID 125
+ + + S +L D +S + E+ +P++V+G K D
Sbjct: 93 DDYDRLRPLFYPDASVLLLCFDVTSPNSFDNIFNRWYPEV--NHFCKKVPIIVVGCKTD 149
|
| >1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8 Length = 205 | Back alignment and structure |
|---|
Score = 49.0 bits (117), Expect = 8e-08
Identities = 23/113 (20%), Positives = 48/113 (42%), Gaps = 6/113 (5%)
Query: 17 LIGLQNAGKTSLVNTIATGGYSEDMIPTVGFN---MRKVTKGNVTIKLWDLGGQRRFRTM 73
++G GKT+L++ A + E+ +PTV N ++ + + LWD G + +
Sbjct: 33 VVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNV 92
Query: 74 WERYCRGVSAILYVVDAADRDSVPIARSE-LHELLMKPSLSGIPLLVLGNKID 125
A+L D + +++ + E+ + +L++G K D
Sbjct: 93 RPLSYPDSDAVLICFDISRPETLDSVLKKWKGEI--QEFCPNTKMLLVGCKSD 143
|
| >2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens} Length = 201 | Back alignment and structure |
|---|
Score = 49.0 bits (117), Expect = 9e-08
Identities = 36/171 (21%), Positives = 59/171 (34%), Gaps = 16/171 (9%)
Query: 17 LIGLQNAGKTSLVNTIATGGYSEDMIPTVGFN---MRKVTKGNVTIKLWDLGGQRRFRTM 73
L+G GKTSLV + T GY + IPT N + V V ++L D GQ F +
Sbjct: 25 LVGDGAVGKTSLVVSYTTNGYPTEYIPTAFDNFSAVVSVDGRPVRLQLCDTAGQDEFDKL 84
Query: 74 WERYCRGVSAILYVVDAADRDSVPIARSE-LHELLMKPSLSGIPLLVLGNKIDKSEALSK 132
L S + + E+ P++++G + D E +
Sbjct: 85 RPLCYTNTDIFLLCFSVVSPSSFQNVSEKWVPEIRCH--CPKAPIILVGTQSDLREDVKV 142
Query: 133 QALVDQLGLESITDREV---------CCYM-ISCKDSINIDAVIDWLIKHS 173
+D+ + + + Y+ S N+ V D I
Sbjct: 143 LIELDKCKEKPVPEEAAKLLAEEIKAASYIECSALTQKNLKEVFDAAIVAG 193
|
| >2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 Length = 207 | Back alignment and structure |
|---|
Score = 48.6 bits (116), Expect = 1e-07
Identities = 27/113 (23%), Positives = 46/113 (40%), Gaps = 6/113 (5%)
Query: 17 LIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMR---KVTKGNVTIKLWDLGGQRRFRTM 73
++G GKT L+ + + E +PTV N +V V + LWD GQ + +
Sbjct: 30 VVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRL 89
Query: 74 WERYCRGVSAILYVVDAADRDSVPIARSE-LHELLMKPSLSGIPLLVLGNKID 125
IL DS+ + + E+ K +P++++ NK D
Sbjct: 90 RPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEV--KHFCPNVPIILVANKKD 140
|
| >2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A* Length = 192 | Back alignment and structure |
|---|
Score = 47.7 bits (114), Expect = 2e-07
Identities = 31/160 (19%), Positives = 53/160 (33%), Gaps = 15/160 (9%)
Query: 15 LSLIGLQNAGKTSLVN--TIATGGYSEDMIPTVGFNMRKVT----KGNVTIKL--WDLGG 66
+ LIG Q GK++L N D + + I L W+ G
Sbjct: 9 VVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIILLDMWENKG 68
Query: 67 QRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDK 126
+ + + + + A L V DR S A +L IP++++GNK D
Sbjct: 69 ENEW--LHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSD- 125
Query: 127 SEALSKQALVDQLGLESITDREVCCYM-ISCKDSINIDAV 165
L + V + ++ S N+ +
Sbjct: 126 ---LVRXREVSVSEGRAXAVVFDXKFIETSAAVQHNVKEL 162
|
| >2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8 Length = 211 | Back alignment and structure |
|---|
Score = 47.7 bits (114), Expect = 2e-07
Identities = 33/168 (19%), Positives = 54/168 (32%), Gaps = 31/168 (18%)
Query: 15 LSLIGLQNAGKTSLVN--TIATGGYSEDMIPTVGFNMRKVT----KGNVTIKL--WDLGG 66
+ LIG Q GK++L N D + + I L W+ G
Sbjct: 40 VVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWENKG 99
Query: 67 QRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKID- 125
+ + + + + A L V DR S A +L IP++++GNK D
Sbjct: 100 ENEW--LHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDL 157
Query: 126 -------KSEALSKQALVDQLGLESITDREVCCYM-ISCKDSINIDAV 165
SE +A C ++ S N+ +
Sbjct: 158 VRCREVSVSEG---RACAVVFD---------CKFIETSAAVQHNVKEL 193
|
| >2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii} Length = 357 | Back alignment and structure |
|---|
Score = 48.3 bits (115), Expect = 3e-07
Identities = 33/174 (18%), Positives = 64/174 (36%), Gaps = 28/174 (16%)
Query: 15 LSLIGLQNAGKTSLVNTIATGGYSEDMIP--TVGFNMRKVTKGNVTIKLWDLGG------ 66
+ + G N GK++L+ + T P T G N+ + G ++ D G
Sbjct: 170 VVIAGHPNVGKSTLLKALTTAKPEIASYPFTTRGINVGQFEDGYFRYQIIDTPGLLDRPI 229
Query: 67 -------QRRFRTMWERYCRGVSAILYVVDAADRDSVPIA--RSELHELLMKPSLSGIPL 117
++ + + I+Y+ D ++ P+ E+ +P
Sbjct: 230 SERNEIEKQAILALRYL----GNLIIYIFDPSEHCGFPLEEQIHLFEEV--HGEFKDLPF 283
Query: 118 LVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCKDSINIDAVIDWLIK 171
LV+ NKID ++ + + L + + + IS ID V + +IK
Sbjct: 284 LVVINKIDVADEENIKRLEKFVKEKGLN-----PIKISALKGTGIDLVKEEIIK 332
|
| >2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum} Length = 228 | Back alignment and structure |
|---|
Score = 46.3 bits (110), Expect = 9e-07
Identities = 26/173 (15%), Positives = 59/173 (34%), Gaps = 19/173 (10%)
Query: 15 LSLIGLQNAGKTSLVNTIATGGYSEDM---IPTVGFNMRKVTKGNVTIKLWDLGG--QRR 69
+ L G N GK+S +N + + + T + ++ D G R
Sbjct: 32 IILSGAPNVGKSSFMNIV-SRANVDVQSYSFTTKNLYVGHFDHKLNKYQIIDTPGLLDRA 90
Query: 70 FRTMWERYCRGVSA-------ILYVVDAADRDSVPIA--RSELHELLMKPSLSGIPLLVL 120
F ++A IL+++D +++ + I + + + K S +++
Sbjct: 91 FENRNTIEMTTITALAHINGVILFIIDISEQCGLTIKEQINLFYSI--KSVFSNKSIVIG 148
Query: 121 GNKID--KSEALSKQALVDQLGLESITDREVCCYMISCKDSINIDAVIDWLIK 171
NKID ++LS + + + S + ++ +
Sbjct: 149 FNKIDKCNMDSLSIDNKLLIKQILDNVKNPIKFSSFSTLTGVGVEQAKITACE 201
|
| >2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A Length = 364 | Back alignment and structure |
|---|
Score = 46.5 bits (111), Expect = 1e-06
Identities = 38/168 (22%), Positives = 65/168 (38%), Gaps = 28/168 (16%)
Query: 16 SLIGLQNAGKTSLVNTIATGG-YSEDMI-----PTVGFNMRKVTKGNVTIKLWDLGGQRR 69
++G N+GKTSL N++ + + P + N I L D G R
Sbjct: 183 GIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKR----YAIPINNRKIMLVDTVGFIR 238
Query: 70 ---------FR-TMWERYCRGVSAILYVVDAADRDSVPIARSEL---HELLMKPSLSGIP 116
F T+ E + A++ V+D+ + + L E+L + +SG P
Sbjct: 239 GIPPQIVDAFFVTLSE--AKYSDALILVIDSTFSE--NLLIETLQSSFEILREIGVSGKP 294
Query: 117 LLVLGNKIDKSEALSKQAL-VDQLGLESITDREVCCYMISCKDSINID 163
+LV NKIDK + L + + + + IS N++
Sbjct: 295 ILVTLNKIDKINGDLYKKLDLVEKLSKELYSPIFDVIPISALKRTNLE 342
|
| >2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana} Length = 212 | Back alignment and structure |
|---|
Score = 45.0 bits (107), Expect = 2e-06
Identities = 36/159 (22%), Positives = 58/159 (36%), Gaps = 10/159 (6%)
Query: 24 GKTSLVNTIATGGYSEDMIPTVGFNMRK---VTKGNVTIKLWDLGGQRRFRTMWERYCRG 80
GKT ++ + + D IPTV N V V + LWD GQ + + RG
Sbjct: 21 GKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGQIVNLGLWDTAGQEDYSRLRPLSYRG 80
Query: 81 VSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKID----KSEALSKQALV 136
+ + S + L + + +P++++G K+D K ++
Sbjct: 81 ADIFVLAFSLISKASYENVLKKWMPELRRFA-PNVPIVLVGTKLDLRDDKGYLADHTNVI 139
Query: 137 D-QLGLESITDREVCCYM-ISCKDSINIDAVIDWLIKHS 173
G E Y+ S K N+ AV D IK
Sbjct: 140 TSTQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVV 178
|
| >1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ... Length = 353 | Back alignment and structure |
|---|
Score = 44.7 bits (105), Expect = 4e-06
Identities = 32/134 (23%), Positives = 53/134 (39%), Gaps = 13/134 (9%)
Query: 41 MIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAADRDSVPI-- 98
+ T G T ++ K++D+GGQR R W GV+AI++ V +D D V
Sbjct: 177 RVKTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAED 236
Query: 99 -ARSELHELLM-------KPSLSGIPLLVLGNKIDK-SEALSKQALVDQL--GLESITDR 147
+ +HE + + +++ NK D E + K L S T
Sbjct: 237 EEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTICYPEYAGSNTYE 296
Query: 148 EVCCYMISCKDSIN 161
E Y+ + +N
Sbjct: 297 EAAAYIQCQFEDLN 310
|
| >3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A* Length = 327 | Back alignment and structure |
|---|
Score = 43.9 bits (103), Expect = 9e-06
Identities = 21/95 (22%), Positives = 39/95 (41%), Gaps = 10/95 (10%)
Query: 41 MIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAADRDSVPI-- 98
+PT G +V ++ D+GGQR R W V++I+++V ++ D V +
Sbjct: 151 RVPTTGIIEYPFDLQSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVES 210
Query: 99 -ARSELHELLM-------KPSLSGIPLLVLGNKID 125
+ + E P +++ NK D
Sbjct: 211 DNENRMEESKALFRTIITYPWFQNSSVILFLNKKD 245
|
| >1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A* Length = 402 | Back alignment and structure |
|---|
Score = 42.9 bits (100), Expect = 2e-05
Identities = 25/98 (25%), Positives = 41/98 (41%), Gaps = 10/98 (10%)
Query: 41 MIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAADRDSVPIAR 100
+ T G K V ++D+GGQR R W + V+AI++VV ++ + V
Sbjct: 201 RVLTSGIFETKFQVDKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIRED 260
Query: 101 SE---LHELLM-------KPSLSGIPLLVLGNKIDKSE 128
++ L E L L I +++ NK D
Sbjct: 261 NQTNRLQEALNLFKSIWNNRWLRTISVILFLNKQDLLA 298
|
| >1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A* Length = 362 | Back alignment and structure |
|---|
Score = 42.4 bits (99), Expect = 2e-05
Identities = 26/95 (27%), Positives = 42/95 (44%), Gaps = 10/95 (10%)
Query: 41 MIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAADRDSVPI-- 98
PT G + NV K+ D+GGQR R W V++IL++V +++ D V +
Sbjct: 185 RRPTKGIHEYDFEIKNVPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMED 244
Query: 99 -ARSELHELLM-------KPSLSGIPLLVLGNKID 125
+ L E L S + +++ NK D
Sbjct: 245 RQTNRLTESLNIFETIVNNRVFSNVSIILFLNKTD 279
|
| >1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1 Length = 301 | Back alignment and structure |
|---|
Score = 41.7 bits (99), Expect = 4e-05
Identities = 20/95 (21%), Positives = 42/95 (44%), Gaps = 10/95 (10%)
Query: 79 RGVSAILYVVDAADRDSVPIARSELHEL-LMKPSLSGIPLLVLGNKIDKSEALSKQALVD 137
V+A+++VVD P + +KP + +P+L++GNK+D ++ + +
Sbjct: 85 ADVNAVVWVVDL----RHPPTPEDELVARALKPLVGKVPILLVGNKLDAAK--YPEEAMK 138
Query: 138 QLGLESITDREVCCYMISCKDSINIDAVIDWLIKH 172
E + + E M+S D + + L+
Sbjct: 139 AYH-ELLPEAEP--RMLSALDERQVAELKADLLAL 170
|
| >3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana} Length = 423 | Back alignment and structure |
|---|
Score = 41.6 bits (98), Expect = 5e-05
Identities = 34/173 (19%), Positives = 59/173 (34%), Gaps = 33/173 (19%)
Query: 16 SLIGLQNAGKTSLVNTIA---------TGGYSEDMIPTVGFNMRKVTKGNVTI------- 59
+ G +N GK+S +N + G + D + M G VT+
Sbjct: 38 VVAGRRNVGKSSFMNALVGQNVSIVSDYAGTTTDPVYKS---MELHPIGPVTLVDTPGLD 94
Query: 60 KLWDLGGQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLV 119
+ +LG R + R + V D+A ++ L + IP +V
Sbjct: 95 DVGELGRLRVEKA--RRVFYRADCGILVTDSAP----TPYEDDVVNLFKE---MEIPFVV 145
Query: 120 LGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCKDSINIDAVIDWLIKH 172
+ NKID K + L ES + +V +S D + + +
Sbjct: 146 VVNKIDVLGE--KAEELKGL-YESRYEAKVLL--VSALQKKGFDDIGKTISEI 193
|
| >1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B* Length = 482 | Back alignment and structure |
|---|
Score = 40.2 bits (95), Expect = 1e-04
Identities = 19/88 (21%), Positives = 42/88 (47%), Gaps = 13/88 (14%)
Query: 84 ILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLES 143
+L+V+DA+ E ++L + LV+ NK+D E ++++ + ++LG
Sbjct: 327 VLFVLDASSPLD-----EEDRKIL--ERIKNKRYLVVINKVDVVEKINEEEIKNKLG--- 376
Query: 144 ITDREVCCYMISCKDSINIDAVIDWLIK 171
TDR + IS ++ + + + +
Sbjct: 377 -TDRHMVK--ISALKGEGLEKLEESIYR 401
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 40.2 bits (93), Expect = 2e-04
Identities = 24/166 (14%), Positives = 49/166 (29%), Gaps = 28/166 (16%)
Query: 10 KQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGF--NMRKVTKGNVTIK-LWDLGG 66
+ + + G+ +GKT + + + + F N++ ++ L L
Sbjct: 148 RPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKL-- 205
Query: 67 QRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDK 126
+ W S I + + ++EL LL LLVL N +
Sbjct: 206 LYQIDPNWTSRSDHSSNIKLRIHS--------IQAELRRLLKSKPYE-NCLLVLLNVQNA 256
Query: 127 SEALSKQALVDQLGLESITDREVCCYMISCKDSINIDAVIDWLIKH 172
+ L C +++ + D + H
Sbjct: 257 K-------AWNAFNLS-------CKILLTTRFKQVTDFLSAATTTH 288
|
| >2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana} Length = 354 | Back alignment and structure |
|---|
Score = 39.7 bits (92), Expect = 2e-04
Identities = 23/104 (22%), Positives = 40/104 (38%), Gaps = 14/104 (13%)
Query: 32 IATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAA 91
+ T G E VG N + +L+D+GGQR R W GV+A+++ +
Sbjct: 162 VRTTGVVEIQFSPVGENKKS----GEVYRLFDVGGQRNERRKWIHLFEGVTAVIFCAAIS 217
Query: 92 DRDSVPI---ARSELHELLM-------KPSLSGIPLLVLGNKID 125
+ D ++ + E +P ++ NK D
Sbjct: 218 EYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKFD 261
|
| >3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A* Length = 476 | Back alignment and structure |
|---|
Score = 39.1 bits (92), Expect = 4e-04
Identities = 19/88 (21%), Positives = 31/88 (35%), Gaps = 9/88 (10%)
Query: 84 ILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLES 143
ILY++D +E+ EL + L + NK+D + A +
Sbjct: 316 ILYLLDLGTERLDDE-LTEIRELK--AAHPAAKFLTVANKLD----RAANADALIRAIAD 368
Query: 144 ITDREVCCYMISCKDSINIDAVIDWLIK 171
T EV IS + ID + +
Sbjct: 369 GTGTEVIG--ISALNGDGIDTLKQHMGD 394
|
| >3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP} Length = 462 | Back alignment and structure |
|---|
Score = 39.0 bits (92), Expect = 4e-04
Identities = 16/88 (18%), Positives = 33/88 (37%), Gaps = 14/88 (15%)
Query: 84 ILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLES 143
+L +DAA + + E+ + PL+++ NKID E +L +
Sbjct: 307 VLLTIDAATGWT-----TGDQEIY--EQVKHRPLILVMNKIDLVEKQLITSLEYPENITQ 359
Query: 144 ITDREVCCYMISCKDSINIDAVIDWLIK 171
I + ID++ +++
Sbjct: 360 I-------VHTAAAQKQGIDSLETAILE 380
|
| >1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A* Length = 413 | Back alignment and structure |
|---|
Score = 38.1 bits (88), Expect = 7e-04
Identities = 23/149 (15%), Positives = 47/149 (31%), Gaps = 18/149 (12%)
Query: 10 KQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTK--------GNVTIKL 61
+ +++ G +GK+S +NT+ G E+ G + +VT +
Sbjct: 67 SSVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTG--VVEVTMERHPYKHPNIPNVVF 124
Query: 62 WDLGGQRRFRTMWERYCRGVSAILY---VVDAADRDSVPIARSELHELLMKPSLSGIPLL 118
WDL G + Y + Y ++ +A R + ++ S+
Sbjct: 125 WDLPGIGSTNFPPDTYLEKMKFYEYDFFIIISATR-----FKKNDIDIAKAISMMKKEFY 179
Query: 119 VLGNKIDKSEALSKQALVDQLGLESITDR 147
+ K+D E +
Sbjct: 180 FVRTKVDSDITNEADGEPQTFDKEKVLQD 208
|
| >3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A* Length = 308 | Back alignment and structure |
|---|
Score = 37.8 bits (89), Expect = 8e-04
Identities = 18/97 (18%), Positives = 39/97 (40%), Gaps = 11/97 (11%)
Query: 79 RGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQAL--- 135
IL+++DA + + P++V+ NKIDK + +
Sbjct: 91 EEADVILFMIDA----TEGWRPRDEEIYQNFIKPLNKPVIVVINKIDKIG--PAKNVLPL 144
Query: 136 VDQLGLESITDREVCCYMISCKDSINIDAVIDWLIKH 172
+D++ + E+ IS N+D ++ ++K+
Sbjct: 145 IDEIHKKHPELTEI--VPISALKGANLDELVKTILKY 179
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 177 | |||
| 1zd9_A | 188 | ADP-ribosylation factor-like 10B; transport protei | 100.0 | |
| 1r8s_A | 164 | ADP-ribosylation factor 1; protein transport/excha | 100.0 | |
| 1upt_A | 171 | ARL1, ADP-ribosylation factor-like protein 1; hydr | 100.0 | |
| 1ksh_A | 186 | ARF-like protein 2; small GTPase, small GTP-bindin | 100.0 | |
| 1fzq_A | 181 | ADP-ribosylation factor-like protein 3; protein-GD | 100.0 | |
| 2b6h_A | 192 | ADP-ribosylation factor 5; membrane trafficking, G | 100.0 | |
| 1zj6_A | 187 | ADP-ribosylation factor-like protein 5; ARL, GTP-b | 100.0 | |
| 4bas_A | 199 | ADP-ribosylation factor, putative (small GTPase, p | 100.0 | |
| 4dkx_A | 216 | RAS-related protein RAB-6A; GTP binding fold, memb | 100.0 | |
| 2x77_A | 189 | ADP-ribosylation factor; GTP-binding protein, smal | 100.0 | |
| 1moz_A | 183 | ARL1, ADP-ribosylation factor-like protein 1; GTP- | 100.0 | |
| 2h17_A | 181 | ADP-ribosylation factor-like protein 5A; GDP, GTPa | 100.0 | |
| 2h57_A | 190 | ADP-ribosylation factor-like protein 6; GTP, GTPas | 100.0 | |
| 1m2o_B | 190 | GTP-binding protein SAR1, GTP binding protein; zin | 100.0 | |
| 1f6b_A | 198 | SAR1; gtpases, N-terminal helix, Mg-containing com | 100.0 | |
| 3o47_A | 329 | ADP-ribosylation factor GTPase-activating protein | 100.0 | |
| 3ihw_A | 184 | Centg3; RAS, centaurin, GTPase, structural genomic | 100.0 | |
| 3q72_A | 166 | GTP-binding protein RAD; G-domain, CAV2 beta, sign | 100.0 | |
| 1ek0_A | 170 | Protein (GTP-binding protein YPT51); vesicular tra | 100.0 | |
| 3oes_A | 201 | GTPase rhebl1; small GTPase, structural genomics, | 100.0 | |
| 3lvq_E | 497 | ARF-GAP with SH3 domain, ANK repeat and PH domain | 100.0 | |
| 2hup_A | 201 | RAS-related protein RAB-43; G-protein, GDP, struct | 100.0 | |
| 3bc1_A | 195 | RAS-related protein RAB-27A; RAB27, GTPase, RAB, s | 100.0 | |
| 4dsu_A | 189 | GTPase KRAS, isoform 2B; small G-protein, signalin | 100.0 | |
| 3t5g_A | 181 | GTP-binding protein RHEB; immunoglobulin-like beta | 100.0 | |
| 1u8z_A | 168 | RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH | 100.0 | |
| 1r2q_A | 170 | RAS-related protein RAB-5A; GTPase, GNP, atomic re | 100.0 | |
| 1c1y_A | 167 | RAS-related protein RAP-1A; GTP-binding proteins, | 100.0 | |
| 3kkq_A | 183 | RAS-related protein M-RAS; GTP-binding, GTPase, si | 100.0 | |
| 1x3s_A | 195 | RAS-related protein RAB-18; GTPase, GNP, structura | 100.0 | |
| 1wms_A | 177 | RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p | 100.0 | |
| 2fg5_A | 192 | RAB-22B, RAS-related protein RAB-31; G-protein, GT | 100.0 | |
| 3tkl_A | 196 | RAS-related protein RAB-1A; vesicle trafficking, p | 100.0 | |
| 2ew1_A | 201 | RAS-related protein RAB-30; G-protein, GTP analogu | 100.0 | |
| 1kao_A | 167 | RAP2A; GTP-binding protein, small G protein, GDP, | 100.0 | |
| 2fn4_A | 181 | P23, RAS-related protein R-RAS; GDP/GTP binding, G | 99.98 | |
| 1z2a_A | 168 | RAS-related protein RAB-23; RAB GTPase, vesicular | 99.98 | |
| 2hxs_A | 178 | RAB-26, RAS-related protein RAB-28; GTPase, signal | 99.98 | |
| 2oil_A | 193 | CATX-8, RAS-related protein RAB-25; G-protein, GDP | 99.98 | |
| 3q85_A | 169 | GTP-binding protein REM 2; G-domain, CAV2 beta, si | 99.98 | |
| 2bov_A | 206 | RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, | 99.98 | |
| 2a9k_A | 187 | RAS-related protein RAL-A; bacterial ADP-ribosyltr | 99.98 | |
| 3reg_A | 194 | RHO-like small GTPase; cytoskeleton, nucleotide-bi | 99.98 | |
| 1z06_A | 189 | RAS-related protein RAB-33B; RAB GTPase, RAB33B GT | 99.98 | |
| 2y8e_A | 179 | RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti | 99.98 | |
| 2f7s_A | 217 | C25KG, RAS-related protein RAB-27B; G-protein, str | 99.98 | |
| 2bme_A | 186 | RAB4A, RAS-related protein RAB4A; GTP-binding prot | 99.98 | |
| 1z0f_A | 179 | RAB14, member RAS oncogene family; RAB GTPase, ves | 99.98 | |
| 3tw8_B | 181 | RAS-related protein RAB-35; longin domain, RAB GTP | 99.98 | |
| 3clv_A | 208 | RAB5 protein, putative; malaria, GTPase, structura | 99.98 | |
| 2efe_B | 181 | Small GTP-binding protein-like; GEF, GTPase, VPS9, | 99.98 | |
| 1z0j_A | 170 | RAB-22, RAS-related protein RAB-22A; RAB GTPase, R | 99.98 | |
| 3dz8_A | 191 | RAS-related protein RAB-3B; GDP, GTPase, structura | 99.98 | |
| 2a5j_A | 191 | RAS-related protein RAB-2B; GTPase, signal transdu | 99.98 | |
| 1g16_A | 170 | RAS-related protein SEC4; G protein RAB, signaling | 99.97 | |
| 2nzj_A | 175 | GTP-binding protein REM 1; GDP/GTP binding, GTP hy | 99.97 | |
| 1zbd_A | 203 | Rabphilin-3A; G protein, effector, RABCDR, synapti | 99.97 | |
| 2p5s_A | 199 | RAS and EF-hand domain containing; G-protein, RAB, | 99.97 | |
| 2fu5_C | 183 | RAS-related protein RAB-8A; MSS4:RAB8 protein comp | 99.97 | |
| 2atv_A | 196 | RERG, RAS-like estrogen-regulated growth inhibitor | 99.97 | |
| 3t1o_A | 198 | Gliding protein MGLA; G domain containing protein, | 99.97 | |
| 2il1_A | 192 | RAB12; G-protein, GDP, GTPase, predicted, structur | 99.97 | |
| 3q3j_B | 214 | RHO-related GTP-binding protein RHO6; RAS-binding | 99.97 | |
| 2g6b_A | 180 | RAS-related protein RAB-26; G-protein, GTP analogu | 99.97 | |
| 2gf9_A | 189 | RAS-related protein RAB-3D; G-protein, structural | 99.97 | |
| 2iwr_A | 178 | Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi | 99.97 | |
| 2erx_A | 172 | GTP-binding protein DI-RAS2; GTP hydrolysis, trans | 99.97 | |
| 1z08_A | 170 | RAS-related protein RAB-21; RAB GTPase, vesicular | 99.97 | |
| 2ce2_X | 166 | GTPase HRAS; signaling protein, guanine nucleotide | 99.97 | |
| 3cbq_A | 195 | GTP-binding protein REM 2; FLJ38964A, structural g | 99.97 | |
| 2yc2_C | 208 | IFT27, small RAB-related GTPase; transport protein | 99.97 | |
| 1ky3_A | 182 | GTP-binding protein YPT7P; vesicular traffic, GTP | 99.97 | |
| 2o52_A | 200 | RAS-related protein RAB-4B; G-protein, GDP, struct | 99.97 | |
| 3con_A | 190 | GTPase NRAS; structural genomics consortium, SGC, | 99.97 | |
| 3c5c_A | 187 | RAS-like protein 12; GDP, GTPase, structural genom | 99.97 | |
| 2j1l_A | 214 | RHO-related GTP-binding protein RHOD; GTPase, memb | 99.97 | |
| 1vg8_A | 207 | RAS-related protein RAB-7; GTP-binding protein, pr | 99.97 | |
| 2bcg_Y | 206 | Protein YP2, GTP-binding protein YPT1; RABGTPase, | 99.97 | |
| 2fv8_A | 207 | H6, RHO-related GTP-binding protein RHOB; GDP/GTP | 99.97 | |
| 4djt_A | 218 | GTP-binding nuclear protein GSP1; structural genom | 99.97 | |
| 3cph_A | 213 | RAS-related protein SEC4; RAB GTPase, prenylation, | 99.97 | |
| 3cpj_B | 223 | GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl | 99.97 | |
| 1mh1_A | 186 | RAC1; GTP-binding, GTPase, small G-protein, RHO fa | 99.97 | |
| 4gzl_A | 204 | RAS-related C3 botulinum toxin substrate 1; rossma | 99.97 | |
| 2fh5_B | 214 | SR-beta, signal recognition particle receptor beta | 99.97 | |
| 2j0v_A | 212 | RAC-like GTP-binding protein ARAC7; nucleotide-bin | 99.97 | |
| 2gf0_A | 199 | GTP-binding protein DI-RAS1; GDP/GTP binding, GTP | 99.97 | |
| 3bwd_D | 182 | RAC-like GTP-binding protein ARAC6; G domain, cyto | 99.97 | |
| 2atx_A | 194 | Small GTP binding protein TC10; GTPase, P-loop, al | 99.97 | |
| 1m7b_A | 184 | RND3/RHOE small GTP-binding protein; small GTPase, | 99.97 | |
| 2q3h_A | 201 | RAS homolog gene family, member U; GTPase, structu | 99.97 | |
| 3gj0_A | 221 | GTP-binding nuclear protein RAN; G protein, GDP, a | 99.97 | |
| 2gco_A | 201 | H9, RHO-related GTP-binding protein RHOC; GTPase,s | 99.97 | |
| 2zej_A | 184 | Dardarin, leucine-rich repeat kinase 2; parkinson' | 99.97 | |
| 2g3y_A | 211 | GTP-binding protein GEM; small GTPase, GDP, inacti | 99.97 | |
| 1gwn_A | 205 | RHO-related GTP-binding protein RHOE; GTPase, inac | 99.97 | |
| 2lkc_A | 178 | Translation initiation factor IF-2; NMR {Geobacill | 99.97 | |
| 3l0i_B | 199 | RAS-related protein RAB-1A; GEF-GDF-RAB complex, G | 99.96 | |
| 3llu_A | 196 | RAS-related GTP-binding protein C; structural geno | 99.96 | |
| 1svi_A | 195 | GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro | 99.96 | |
| 2wji_A | 165 | Ferrous iron transport protein B homolog; membrane | 99.96 | |
| 2qu8_A | 228 | Putative nucleolar GTP-binding protein 1; GTPase, | 99.96 | |
| 3th5_A | 204 | RAS-related C3 botulinum toxin substrate 1; rossma | 99.93 | |
| 2gj8_A | 172 | MNME, tRNA modification GTPase TRME; G-domain dime | 99.96 | |
| 2cjw_A | 192 | GTP-binding protein GEM; nucleotide-binding, small | 99.96 | |
| 3pqc_A | 195 | Probable GTP-binding protein ENGB; rossmann fold, | 99.96 | |
| 2dyk_A | 161 | GTP-binding protein; GTPase, ribosome-binding prot | 99.96 | |
| 3r7w_A | 307 | Gtpase1, GTP-binding protein GTR1; RAG gtpases, GT | 99.96 | |
| 2cxx_A | 190 | Probable GTP-binding protein ENGB; structural geno | 99.96 | |
| 3r7w_B | 331 | Gtpase2, GTP-binding protein GTR2; RAG gtpases, GT | 99.95 | |
| 3iev_A | 308 | GTP-binding protein ERA; ERA, GTPase, KH domain, a | 99.95 | |
| 2wkq_A | 332 | NPH1-1, RAS-related C3 botulinum toxin substrate 1 | 99.95 | |
| 4dhe_A | 223 | Probable GTP-binding protein ENGB; melioidosis, RA | 99.95 | |
| 1wf3_A | 301 | GTP-binding protein; GTPase, riken structural geno | 99.95 | |
| 2wjg_A | 188 | FEOB, ferrous iron transport protein B homolog; me | 99.95 | |
| 3c5h_A | 255 | Glucocorticoid receptor DNA-binding factor 1; RAS, | 99.95 | |
| 3a1s_A | 258 | Iron(II) transport protein B; FEOB, iron transport | 99.95 | |
| 2f9l_A | 199 | RAB11B, member RAS oncogene family; RAB11B GTPase, | 99.94 | |
| 2hjg_A | 436 | GTP-binding protein ENGA; GTPase ENGA KH-domain, h | 99.94 | |
| 3b1v_A | 272 | Ferrous iron uptake transporter protein B; G prote | 99.94 | |
| 3i8s_A | 274 | Ferrous iron transport protein B; GTPase, GPCR, ir | 99.94 | |
| 3iby_A | 256 | Ferrous iron transport protein B; G protein, G dom | 99.94 | |
| 3gee_A | 476 | MNME, tRNA modification GTPase MNME; G protein, cy | 99.94 | |
| 3k53_A | 271 | Ferrous iron transport protein B; GTPase fold, hel | 99.93 | |
| 3dpu_A | 535 | RAB family protein; roccor, G-domain, COR, GTP-bin | 99.93 | |
| 1lnz_A | 342 | SPO0B-associated GTP-binding protein; GTPase, OBG, | 99.93 | |
| 3ohm_A | 327 | Guanine nucleotide-binding protein G(Q) subunit A; | 99.93 | |
| 1oix_A | 191 | RAS-related protein RAB-11A; small G protein, intr | 99.93 | |
| 4dcu_A | 456 | GTP-binding protein ENGA; GTPase, GDP, protein bin | 99.93 | |
| 1cip_A | 353 | Protein (guanine nucleotide-binding protein alpha- | 99.93 | |
| 3sjy_A | 403 | Translation initiation factor 2 subunit gamma; zin | 99.93 | |
| 1xzp_A | 482 | Probable tRNA modification GTPase TRME; GTP-bindin | 99.93 | |
| 4fid_A | 340 | G protein alpha subunit; RAS-like domain, all-heli | 99.92 | |
| 2e87_A | 357 | Hypothetical protein PH1320; GTP-binding, GTPase, | 99.92 | |
| 1mky_A | 439 | Probable GTP-binding protein ENGA; GTPase, DER, KH | 99.92 | |
| 1s0u_A | 408 | EIF-2-gamma, translation initiation factor 2 gamma | 99.92 | |
| 1wb1_A | 482 | Translation elongation factor SELB; selenocysteine | 99.92 | |
| 1nrj_B | 218 | SR-beta, signal recognition particle receptor beta | 99.92 | |
| 3geh_A | 462 | MNME, tRNA modification GTPase MNME; G protein, U3 | 99.92 | |
| 1mky_A | 439 | Probable GTP-binding protein ENGA; GTPase, DER, KH | 99.92 | |
| 1zcb_A | 362 | G alpha I/13; GTP-binding, lipoprotein, membrane, | 99.92 | |
| 1kk1_A | 410 | EIF2gamma; initiation of translation; HET: GNP; 1. | 99.92 | |
| 1ega_A | 301 | Protein (GTP-binding protein ERA); GTPase, RNA-bin | 99.92 | |
| 2hjg_A | 436 | GTP-binding protein ENGA; GTPase ENGA KH-domain, h | 99.91 | |
| 3qq5_A | 423 | Small GTP-binding protein; hydrogenase, H-cluster, | 99.91 | |
| 3j2k_7 | 439 | ERF3, eukaryotic polypeptide chain release factor | 99.91 | |
| 3p26_A | 483 | Elongation factor 1 alpha-like protein; GTP/GDP bi | 99.91 | |
| 2elf_A | 370 | Protein translation elongation factor 1A; tRNA, py | 99.91 | |
| 2c78_A | 405 | Elongation factor TU-A; hydrolase, GTPase, transla | 99.9 | |
| 2qtf_A | 364 | Protein HFLX, GTP-binding protein; beta-alpha-barr | 99.9 | |
| 2xtp_A | 260 | GTPase IMAP family member 2; immune system, G prot | 99.9 | |
| 2ywe_A | 600 | GTP-binding protein LEPA; G domain, beta-barrel, f | 99.9 | |
| 2xtz_A | 354 | Guanine nucleotide-binding protein alpha-1 subuni; | 99.9 | |
| 1azs_C | 402 | GS-alpha; complex (lyase/hydrolase), hydrolase, si | 99.9 | |
| 1zun_B | 434 | Sulfate adenylate transferase, subunit 1/adenylyls | 99.9 | |
| 3cb4_D | 599 | GTP-binding protein LEPA; GTPase, OB-fold, membran | 99.9 | |
| 3tr5_A | 528 | RF-3, peptide chain release factor 3; protein synt | 99.9 | |
| 1jny_A | 435 | EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF- | 99.9 | |
| 1d2e_A | 397 | Elongation factor TU (EF-TU); G-protein, beta-barr | 99.9 | |
| 3izy_P | 537 | Translation initiation factor IF-2, mitochondrial; | 99.9 | |
| 4dcu_A | 456 | GTP-binding protein ENGA; GTPase, GDP, protein bin | 99.89 | |
| 2ged_A | 193 | SR-beta, signal recognition particle receptor beta | 99.89 | |
| 2aka_B | 299 | Dynamin-1; fusion protein, GTPase domain, myosin, | 99.89 | |
| 3lxw_A | 247 | GTPase IMAP family member 1; immunity, structural | 99.89 | |
| 3t5d_A | 274 | Septin-7; GTP-binding protein, cytoskeleton, signa | 99.89 | |
| 3lxx_A | 239 | GTPase IMAP family member 4; structural genomics c | 99.89 | |
| 3avx_A | 1289 | Elongation factor TS, elongation factor TU, linke | 99.88 | |
| 3izq_1 | 611 | HBS1P, elongation factor 1 alpha-like protein; NO- | 99.88 | |
| 1g7s_A | 594 | Translation initiation factor IF2/EIF5B; translati | 99.88 | |
| 1f60_A | 458 | Elongation factor EEF1A; protein-protein complex, | 99.87 | |
| 1zo1_I | 501 | IF2, translation initiation factor 2; E. coli, rib | 99.87 | |
| 1pui_A | 210 | ENGB, probable GTP-binding protein ENGB; structura | 99.87 | |
| 1dar_A | 691 | EF-G, elongation factor G; ribosomal translocase, | 99.87 | |
| 2h5e_A | 529 | Peptide chain release factor RF-3; beta barrel, tr | 99.87 | |
| 1r5b_A | 467 | Eukaryotic peptide chain release factor GTP-bindi | 99.87 | |
| 2j69_A | 695 | Bacterial dynamin-like protein; FZO, FZL, GTPase, | 99.86 | |
| 1jwy_B | 315 | Dynamin A GTPase domain; dynamin, GTPase, GDP, myo | 99.86 | |
| 3mca_A | 592 | HBS1, elongation factor 1 alpha-like protein; prot | 99.86 | |
| 2dy1_A | 665 | Elongation factor G; translocation, GTP complex, s | 99.85 | |
| 2qag_A | 361 | Septin-2, protein NEDD5; cell cycle, cell division | 99.85 | |
| 1udx_A | 416 | The GTP-binding protein OBG; TGS domain, riken str | 99.84 | |
| 2xex_A | 693 | Elongation factor G; GTPase, translation, biosynth | 99.83 | |
| 3def_A | 262 | T7I23.11 protein; chloroplast, TOC33, GTPase, hydr | 99.83 | |
| 2rdo_7 | 704 | EF-G, elongation factor G; elongation factor G, EF | 99.83 | |
| 1h65_A | 270 | Chloroplast outer envelope protein OEP34; GTPase, | 99.81 | |
| 3vqt_A | 548 | RF-3, peptide chain release factor 3; translation, | 99.81 | |
| 2x2e_A | 353 | Dynamin-1; nitration, hydrolase, membrane fission, | 99.81 | |
| 3t34_A | 360 | Dynamin-related protein 1A, linker, dynamin-relat | 99.8 | |
| 3p32_A | 355 | Probable GTPase RV1496/MT1543; structural genomics | 99.79 | |
| 1wxq_A | 397 | GTP-binding protein; structural genomics, riken st | 99.77 | |
| 2qpt_A | 550 | EH domain-containing protein-2; protein-nucleotide | 99.76 | |
| 2qnr_A | 301 | Septin-2, protein NEDD5; structural genomics conso | 99.76 | |
| 1n0u_A | 842 | EF-2, elongation factor 2; G-protein, CIS-proline, | 99.75 | |
| 3zvr_A | 772 | Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mito | 99.74 | |
| 1yrb_A | 262 | ATP(GTP)binding protein; GTPase, P-loop, rossman f | 99.74 | |
| 2www_A | 349 | Methylmalonic aciduria type A protein, mitochondri | 99.73 | |
| 1u0l_A | 301 | Probable GTPase ENGC; permutation, OB-fold, zinc-f | 99.73 | |
| 2wsm_A | 221 | Hydrogenase expression/formation protein (HYPB); m | 99.73 | |
| 2p67_A | 341 | LAO/AO transport system kinase; ARGK, structural G | 99.73 | |
| 2qag_C | 418 | Septin-7; cell cycle, cell division, GTP-binding, | 99.71 | |
| 3l82_B | 227 | F-box only protein 4; TRFH domain, helix, GTPase d | 99.7 | |
| 1jal_A | 363 | YCHF protein; nucleotide-binding fold, structural | 99.7 | |
| 4a9a_A | 376 | Ribosome-interacting GTPase 1; DRG-DFRP complex, r | 99.69 | |
| 3j25_A | 638 | Tetracycline resistance protein TETM; antibiotic r | 99.69 | |
| 4fn5_A | 709 | EF-G 1, elongation factor G 1; translation, transl | 99.66 | |
| 2hf9_A | 226 | Probable hydrogenase nickel incorporation protein | 99.65 | |
| 2qm8_A | 337 | GTPase/ATPase; G protein, G3E, metallochaperone, c | 99.62 | |
| 2dby_A | 368 | GTP-binding protein; GDP, structural genomics, NPP | 99.61 | |
| 3l2o_B | 312 | F-box only protein 4; small G protein fold, UBL co | 99.59 | |
| 2ohf_A | 396 | Protein OLA1, GTP-binding protein 9; ATPase, GTPas | 99.43 | |
| 2yv5_A | 302 | YJEQ protein; hydrolase, GTPase, permutation, stru | 99.34 | |
| 2j37_W | 504 | Signal recognition particle 54 kDa protein (SRP54) | 99.23 | |
| 1ni3_A | 392 | YCHF GTPase, YCHF GTP-binding protein; structural | 99.19 | |
| 1tq4_A | 413 | IIGP1, interferon-inducible GTPase; interferon gam | 99.17 | |
| 2qag_B | 427 | Septin-6, protein NEDD5; cell cycle, cell division | 99.13 | |
| 3h2y_A | 368 | GTPase family protein; GTP-binding protein YQEH, p | 99.11 | |
| 3sop_A | 270 | Neuronal-specific septin-3; hydrolase; HET: GDP; 2 | 99.1 | |
| 1puj_A | 282 | YLQF, conserved hypothetical protein YLQF; structu | 99.09 | |
| 3ec1_A | 369 | YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase | 99.07 | |
| 3ec1_A | 369 | YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase | 99.07 | |
| 3h2y_A | 368 | GTPase family protein; GTP-binding protein YQEH, p | 99.01 | |
| 2v3c_C | 432 | SRP54, signal recognition 54 kDa protein; nucleoti | 98.82 | |
| 1puj_A | 282 | YLQF, conserved hypothetical protein YLQF; structu | 98.77 | |
| 3szr_A | 608 | Interferon-induced GTP-binding protein MX1; interf | 98.73 | |
| 3cnl_A | 262 | YLQF, putative uncharacterized protein; circular p | 98.68 | |
| 3dm5_A | 443 | SRP54, signal recognition 54 kDa protein; protein- | 98.67 | |
| 1f5n_A | 592 | Interferon-induced guanylate-binding protein 1; GB | 98.62 | |
| 3cnl_A | 262 | YLQF, putative uncharacterized protein; circular p | 98.51 | |
| 3kl4_A | 433 | SRP54, signal recognition 54 kDa protein; signal r | 98.49 | |
| 1j8m_F | 297 | SRP54, signal recognition 54 kDa protein; signalin | 98.43 | |
| 1t9h_A | 307 | YLOQ, probable GTPase ENGC; N-terminal beta-barrel | 98.38 | |
| 1bif_A | 469 | 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; | 98.15 | |
| 2rcn_A | 358 | Probable GTPase ENGC; YJEQ, circularly permuted, G | 98.1 | |
| 2xxa_A | 433 | Signal recognition particle protein; protein trans | 98.09 | |
| 3q5d_A | 447 | Atlastin-1; G protein, GTPase, GDP/GTP binding, hy | 97.93 | |
| 1ye8_A | 178 | Protein THEP1, hypothetical UPF0334 kinase-like pr | 97.9 | |
| 1np6_A | 174 | Molybdopterin-guanine dinucleotide biosynthesis pr | 97.89 | |
| 4gp7_A | 171 | Metallophosphoesterase; polynucleotide kinase phos | 97.89 | |
| 1z6g_A | 218 | Guanylate kinase; structural genomics, SGC, struct | 97.88 | |
| 3tif_A | 235 | Uncharacterized ABC transporter ATP-binding prote; | 97.85 | |
| 2pcj_A | 224 | ABC transporter, lipoprotein-releasing system ATP- | 97.83 | |
| 2cbz_A | 237 | Multidrug resistance-associated protein 1; ABC pro | 97.8 | |
| 1mv5_A | 243 | LMRA, multidrug resistance ABC transporter ATP-bin | 97.8 | |
| 4eun_A | 200 | Thermoresistant glucokinase; putative sugar kinase | 97.79 | |
| 3gfo_A | 275 | Cobalt import ATP-binding protein CBIO 1; structur | 97.78 | |
| 2onk_A | 240 | Molybdate/tungstate ABC transporter, ATP-binding p | 97.78 | |
| 2ff7_A | 247 | Alpha-hemolysin translocation ATP-binding protein | 97.77 | |
| 1b0u_A | 262 | Histidine permease; ABC transporter, transport pro | 97.77 | |
| 2jeo_A | 245 | Uridine-cytidine kinase 1; UCK, transferase, ATP-b | 97.76 | |
| 1g6h_A | 257 | High-affinity branched-chain amino acid transport | 97.76 | |
| 2pze_A | 229 | Cystic fibrosis transmembrane conductance regulat; | 97.76 | |
| 4dzz_A | 206 | Plasmid partitioning protein PARF; deviant walker | 97.76 | |
| 1zp6_A | 191 | Hypothetical protein ATU3015; alpha-beta protein., | 97.75 | |
| 3vaa_A | 199 | Shikimate kinase, SK; structural genomics, center | 97.75 | |
| 2olj_A | 263 | Amino acid ABC transporter; ABC domain, ATPase, hy | 97.75 | |
| 1kgd_A | 180 | CASK, peripheral plasma membrane CASK; maguk, guan | 97.75 | |
| 4g1u_C | 266 | Hemin import ATP-binding protein HMUV; membrane tr | 97.75 | |
| 1sgw_A | 214 | Putative ABC transporter; structural genomics, P p | 97.75 | |
| 3tr0_A | 205 | Guanylate kinase, GMP kinase; purines, pyrimidines | 97.74 | |
| 2qi9_C | 249 | Vitamin B12 import ATP-binding protein BTUD; inner | 97.74 | |
| 2ihy_A | 279 | ABC transporter, ATP-binding protein; ATPase, ABC | 97.73 | |
| 1ji0_A | 240 | ABC transporter; ATP binding protein, structural g | 97.73 | |
| 2ghi_A | 260 | Transport protein; multidrug resistance protein, M | 97.73 | |
| 2zu0_C | 267 | Probable ATP-dependent transporter SUFC; iron-sulf | 97.72 | |
| 2d2e_A | 250 | SUFC protein; ABC-ATPase, SUF protein, 310-helix, | 97.72 | |
| 3c8u_A | 208 | Fructokinase; YP_612366.1, putative fructose trans | 97.72 | |
| 1vpl_A | 256 | ABC transporter, ATP-binding protein; TM0544, stru | 97.72 | |
| 2ixe_A | 271 | Antigen peptide transporter 1; ABC ATPase, hydrola | 97.72 | |
| 1y63_A | 184 | LMAJ004144AAA protein; structural genomics, protei | 97.7 | |
| 1lvg_A | 198 | Guanylate kinase, GMP kinase; transferase; HET: AD | 97.7 | |
| 1htw_A | 158 | HI0065; nucleotide-binding fold, structural genomi | 97.7 | |
| 2nq2_C | 253 | Hypothetical ABC transporter ATP-binding protein H | 97.69 | |
| 3lnc_A | 231 | Guanylate kinase, GMP kinase; ALS collaborative cr | 97.69 | |
| 2yz2_A | 266 | Putative ABC transporter ATP-binding protein TM_0; | 97.68 | |
| 2ffh_A | 425 | Protein (FFH); SRP54, signal recognition particle, | 97.68 | |
| 3ney_A | 197 | 55 kDa erythrocyte membrane protein; structural ge | 97.68 | |
| 2j41_A | 207 | Guanylate kinase; GMP, GMK, transferase, ATP-bindi | 97.67 | |
| 3a00_A | 186 | Guanylate kinase, GMP kinase; domain movement, dim | 97.66 | |
| 2v9p_A | 305 | Replication protein E1; AAA+ molecular motor, DNA | 97.65 | |
| 3asz_A | 211 | Uridine kinase; cytidine phosphorylation, transfer | 97.65 | |
| 2qor_A | 204 | Guanylate kinase; phosphotransferase, purine metab | 97.64 | |
| 1znw_A | 207 | Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans | 97.64 | |
| 3nh6_A | 306 | ATP-binding cassette SUB-family B member 6, mitoc; | 97.63 | |
| 2bbs_A | 290 | Cystic fibrosis transmembrane conductance regulato | 97.62 | |
| 3ec2_A | 180 | DNA replication protein DNAC; helicase loader, rep | 97.61 | |
| 2pjz_A | 263 | Hypothetical protein ST1066; ATP binding protein, | 97.6 | |
| 3fvq_A | 359 | Fe(3+) IONS import ATP-binding protein FBPC; nucle | 97.57 | |
| 3tui_C | 366 | Methionine import ATP-binding protein METN; ABC-tr | 97.57 | |
| 1kag_A | 173 | SKI, shikimate kinase I; transferase, structural g | 97.57 | |
| 2bbw_A | 246 | Adenylate kinase 4, AK4; nucleotide kinase, nucleo | 97.55 | |
| 3lw7_A | 179 | Adenylate kinase related protein (ADKA-like); AMP, | 97.55 | |
| 3cm0_A | 186 | Adenylate kinase; ATP-binding, cytoplasm, nucleoti | 97.55 | |
| 3rlf_A | 381 | Maltose/maltodextrin import ATP-binding protein M; | 97.54 | |
| 1z47_A | 355 | CYSA, putative ABC-transporter ATP-binding protein | 97.54 | |
| 2yyz_A | 359 | Sugar ABC transporter, ATP-binding protein; sugar | 97.54 | |
| 1s96_A | 219 | Guanylate kinase, GMP kinase; E.coli, dimer, SAD, | 97.54 | |
| 1ly1_A | 181 | Polynucleotide kinase; PNK, phosphatase, transfera | 97.54 | |
| 2it1_A | 362 | 362AA long hypothetical maltose/maltodextrin trans | 97.54 | |
| 3kb2_A | 173 | SPBC2 prophage-derived uncharacterized protein YOR | 97.52 | |
| 2x8a_A | 274 | Nuclear valosin-containing protein-like; nuclear p | 97.52 | |
| 3fb4_A | 216 | Adenylate kinase; psychrophIle, phosphotransferase | 97.51 | |
| 1v43_A | 372 | Sugar-binding transport ATP-binding protein; ATPas | 97.51 | |
| 2bdt_A | 189 | BH3686; alpha-beta protein, structural genomics, P | 97.51 | |
| 3dl0_A | 216 | Adenylate kinase; phosphotransferase, zinc coordin | 97.5 | |
| 3tau_A | 208 | Guanylate kinase, GMP kinase; structural genomics, | 97.5 | |
| 3gd7_A | 390 | Fusion complex of cystic fibrosis transmembrane co | 97.49 | |
| 1ex7_A | 186 | Guanylate kinase; substrate-induced FIT, domain mo | 97.49 | |
| 1g29_1 | 372 | MALK, maltose transport protein MALK; ATPase, acti | 97.48 | |
| 1cke_A | 227 | CK, MSSA, protein (cytidine monophosphate kinase); | 97.48 | |
| 2rcn_A | 358 | Probable GTPase ENGC; YJEQ, circularly permuted, G | 97.48 | |
| 2rhm_A | 193 | Putative kinase; P-loop containing nucleoside trip | 97.47 | |
| 3tlx_A | 243 | Adenylate kinase 2; structural genomics, structura | 97.46 | |
| 2if2_A | 204 | Dephospho-COA kinase; alpha-beta protein, structur | 97.46 | |
| 3uie_A | 200 | Adenylyl-sulfate kinase 1, chloroplastic; rossmann | 97.46 | |
| 1knq_A | 175 | Gluconate kinase; ALFA/beta structure, transferase | 97.45 | |
| 2cdn_A | 201 | Adenylate kinase; phosphoryl transfer, associative | 97.45 | |
| 1aky_A | 220 | Adenylate kinase; ATP:AMP phosphotransferase, myok | 97.45 | |
| 2i3b_A | 189 | HCR-ntpase, human cancer-related ntpase; AAA, ross | 97.45 | |
| 3sr0_A | 206 | Adenylate kinase; phosphoryl transfer analogue, AL | 97.45 | |
| 3aez_A | 312 | Pantothenate kinase; transferase, homodimer, COA b | 97.44 | |
| 1kht_A | 192 | Adenylate kinase; phosphotransferase, signaling pr | 97.44 | |
| 3d31_A | 348 | Sulfate/molybdate ABC transporter, ATP-binding pro | 97.44 | |
| 2qt1_A | 207 | Nicotinamide riboside kinase 1; non-protein kinase | 97.44 | |
| 2eyu_A | 261 | Twitching motility protein PILT; pilus retraction | 97.43 | |
| 1jjv_A | 206 | Dephospho-COA kinase; P-loop nucleotide-binding fo | 97.43 | |
| 3b85_A | 208 | Phosphate starvation-inducible protein; PHOH2, ATP | 97.42 | |
| 3t61_A | 202 | Gluconokinase; PSI-biology, structural genomics, p | 97.42 | |
| 1tev_A | 196 | UMP-CMP kinase; ploop, NMP binding region, LID reg | 97.42 | |
| 1nks_A | 194 | Adenylate kinase; thermophilic, transferase; HET: | 97.41 | |
| 2jaq_A | 205 | Deoxyguanosine kinase; transferase, deoxyribonucle | 97.41 | |
| 2ehv_A | 251 | Hypothetical protein PH0186; KAIC, RECA ATPase, un | 97.4 | |
| 1qhx_A | 178 | CPT, protein (chloramphenicol phosphotransferase); | 97.39 | |
| 1ukz_A | 203 | Uridylate kinase; transferase; HET: ADP AMP; 1.90A | 97.39 | |
| 1e4v_A | 214 | Adenylate kinase; transferase(phosphotransferase); | 97.39 | |
| 1ixz_A | 254 | ATP-dependent metalloprotease FTSH; AAA domain fol | 97.39 | |
| 2plr_A | 213 | DTMP kinase, probable thymidylate kinase; TMP-bind | 97.38 | |
| 3end_A | 307 | Light-independent protochlorophyllide reductase ir | 97.38 | |
| 1zd8_A | 227 | GTP:AMP phosphotransferase mitochondrial; ATP:AMP | 97.38 | |
| 1oxx_K | 353 | GLCV, glucose, ABC transporter, ATP binding protei | 97.38 | |
| 1lw7_A | 365 | Transcriptional regulator NADR; NMN, NMN adenylyl | 97.37 | |
| 2v54_A | 204 | DTMP kinase, thymidylate kinase; nucleotide biosyn | 97.37 | |
| 2c95_A | 196 | Adenylate kinase 1; transferase, AP4A, nucleotide | 97.37 | |
| 2gza_A | 361 | Type IV secretion system protein VIRB11; ATPase, h | 97.36 | |
| 3b9q_A | 302 | Chloroplast SRP receptor homolog, alpha subunit CP | 97.36 | |
| 3trf_A | 185 | Shikimate kinase, SK; amino acid biosynthesis, tra | 97.35 | |
| 2yvu_A | 186 | Probable adenylyl-sulfate kinase; transferase, str | 97.34 | |
| 1nn5_A | 215 | Similar to deoxythymidylate kinase (thymidylate K; | 97.34 | |
| 4a74_A | 231 | DNA repair and recombination protein RADA; hydrola | 97.33 | |
| 1t9h_A | 307 | YLOQ, probable GTPase ENGC; N-terminal beta-barrel | 97.33 | |
| 1u0l_A | 301 | Probable GTPase ENGC; permutation, OB-fold, zinc-f | 97.33 | |
| 2yv5_A | 302 | YJEQ protein; hydrolase, GTPase, permutation, stru | 97.33 | |
| 2wwf_A | 212 | Thymidilate kinase, putative; transferase, malaria | 97.33 | |
| 1zak_A | 222 | Adenylate kinase; ATP:AMP-phosphotransferase, tran | 97.32 | |
| 3tqc_A | 321 | Pantothenate kinase; biosynthesis of cofactors, pr | 97.32 | |
| 1via_A | 175 | Shikimate kinase; structural genomics, transferase | 97.32 | |
| 1rz3_A | 201 | Hypothetical protein rbstp0775; MCSG, structural g | 97.31 | |
| 2pt5_A | 168 | Shikimate kinase, SK; aromatic amino acid biosynth | 97.31 | |
| 1uf9_A | 203 | TT1252 protein; P-loop, nucleotide binding domain, | 97.31 | |
| 3be4_A | 217 | Adenylate kinase; malaria, cryptosporidium parvum | 97.29 | |
| 1iy2_A | 278 | ATP-dependent metalloprotease FTSH; AAA domain fol | 97.29 | |
| 2bwj_A | 199 | Adenylate kinase 5; phosphoryl transfer reaction, | 97.29 | |
| 1qf9_A | 194 | UMP/CMP kinase, protein (uridylmonophosphate/cytid | 97.28 | |
| 1gvn_B | 287 | Zeta; postsegregational killing system, plasmid; 1 | 97.28 | |
| 4e22_A | 252 | Cytidylate kinase; P-loop, CMP/ATP binding, transf | 97.28 | |
| 2xb4_A | 223 | Adenylate kinase; ATP-binding, nucleotide-binding, | 97.28 | |
| 3iij_A | 180 | Coilin-interacting nuclear ATPase protein; alpha a | 97.28 | |
| 1sq5_A | 308 | Pantothenate kinase; P-loop, transferase; HET: PAU | 97.28 | |
| 3b60_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 97.27 | |
| 2pez_A | 179 | Bifunctional 3'-phosphoadenosine 5'- phosphosulfat | 97.26 | |
| 3jvv_A | 356 | Twitching mobility protein; hexameric P-loop ATPas | 97.26 | |
| 2oap_1 | 511 | GSPE-2, type II secretion system protein; hexameri | 97.26 | |
| 2vli_A | 183 | Antibiotic resistance protein; transferase, tunica | 97.26 | |
| 2yhs_A | 503 | FTSY, cell division protein FTSY; cell cycle, prot | 97.25 | |
| 2kjq_A | 149 | DNAA-related protein; solution structure, NESG, st | 97.25 | |
| 1odf_A | 290 | YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser | 97.24 | |
| 2pt7_A | 330 | CAG-ALFA; ATPase, protein-protein complex, type IV | 97.24 | |
| 1vht_A | 218 | Dephospho-COA kinase; structural genomics, transfe | 97.23 | |
| 1uj2_A | 252 | Uridine-cytidine kinase 2; alpha/beta mononucleoti | 97.23 | |
| 2og2_A | 359 | Putative signal recognition particle receptor; nuc | 97.23 | |
| 2pbr_A | 195 | DTMP kinase, thymidylate kinase; transferase, nucl | 97.23 | |
| 2p5t_B | 253 | PEZT; postsegregational killing system, phosphoryl | 97.22 | |
| 1ak2_A | 233 | Adenylate kinase isoenzyme-2; nucleoside monophosp | 97.22 | |
| 3b5x_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 97.21 | |
| 3cwq_A | 209 | Para family chromosome partitioning protein; alpha | 97.21 | |
| 2yl4_A | 595 | ATP-binding cassette SUB-family B member 10, mitoc | 97.2 | |
| 2vp4_A | 230 | Deoxynucleoside kinase; ATP-binding, DNA synthesis | 97.2 | |
| 3kta_A | 182 | Chromosome segregation protein SMC; structural mai | 97.19 | |
| 2z0h_A | 197 | DTMP kinase, thymidylate kinase; ATP-binding, nucl | 97.18 | |
| 2ze6_A | 253 | Isopentenyl transferase; crown GALL tumor, cytokin | 97.18 | |
| 2f1r_A | 171 | Molybdopterin-guanine dinucleotide biosynthesis pr | 97.18 | |
| 1jbk_A | 195 | CLPB protein; beta barrel, chaperone; 1.80A {Esche | 97.18 | |
| 3nwj_A | 250 | ATSK2; P loop, shikimate, nucleoside monophosphate | 97.18 | |
| 3r20_A | 233 | Cytidylate kinase; structural genomics, seattle st | 97.18 | |
| 1zuh_A | 168 | Shikimate kinase; alpha-beta protein, transferase; | 97.18 | |
| 3qf4_B | 598 | Uncharacterized ABC transporter ATP-binding prote | 97.17 | |
| 3a4m_A | 260 | L-seryl-tRNA(SEC) kinase; P-loop motif, walker A m | 97.17 | |
| 2npi_A | 460 | Protein CLP1; CLP1-PCF11 complex, ATP binding, ter | 97.17 | |
| 1e6c_A | 173 | Shikimate kinase; phosphoryl transfer, ADP, shikim | 97.15 | |
| 2f6r_A | 281 | COA synthase, bifunctional coenzyme A synthase; 18 | 97.15 | |
| 4a82_A | 578 | Cystic fibrosis transmembrane conductance regulat; | 97.14 | |
| 1rj9_A | 304 | FTSY, signal recognition protein; SRP-GTPase domai | 97.14 | |
| 2iyv_A | 184 | Shikimate kinase, SK; transferase, aromatic amino | 97.13 | |
| 2ewv_A | 372 | Twitching motility protein PILT; pilus retraction | 97.12 | |
| 3umf_A | 217 | Adenylate kinase; rossmann fold, transferase; 2.05 | 97.11 | |
| 3e70_C | 328 | DPA, signal recognition particle receptor; FTSY, S | 97.11 | |
| 3qf4_A | 587 | ABC transporter, ATP-binding protein; multidrug tr | 97.1 | |
| 1p9r_A | 418 | General secretion pathway protein E; bacterial typ | 97.1 | |
| 1m7g_A | 211 | Adenylylsulfate kinase; APS kinase, transferase, s | 97.09 | |
| 3euj_A | 483 | Chromosome partition protein MUKB, linker; MUKB, M | 97.09 | |
| 2w0m_A | 235 | SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus | 97.09 | |
| 3qf7_A | 365 | RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1. | 97.08 | |
| 1xjc_A | 169 | MOBB protein homolog; structural genomics, midwest | 97.08 | |
| 4eaq_A | 229 | DTMP kinase, thymidylate kinase; structural genomi | 97.08 | |
| 1gtv_A | 214 | TMK, thymidylate kinase; transferase, transferase | 97.07 | |
| 1in4_A | 334 | RUVB, holliday junction DNA helicase RUVB; AAA+-cl | 97.07 | |
| 1svm_A | 377 | Large T antigen; AAA+ fold, viral protein; HET: AT | 97.02 | |
| 2p65_A | 187 | Hypothetical protein PF08_0063; CLPB, malaria, str | 97.02 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 97.0 | |
| 2grj_A | 192 | Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosp | 97.0 | |
| 3bos_A | 242 | Putative DNA replication factor; P-loop containing | 96.99 | |
| 1f2t_A | 149 | RAD50 ABC-ATPase; DNA double-strand break repair, | 96.97 | |
| 1lv7_A | 257 | FTSH; alpha/beta domain, four helix bundle, hydrol | 96.97 | |
| 1cr0_A | 296 | DNA primase/helicase; RECA-type protein fold, tran | 96.96 | |
| 2cvh_A | 220 | DNA repair and recombination protein RADB; filamen | 96.95 | |
| 3n70_A | 145 | Transport activator; sigma-54, ntpase, PSI, MCSG, | 96.94 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 96.94 | |
| 2w58_A | 202 | DNAI, primosome component (helicase loader); ATP-b | 96.93 | |
| 1n0w_A | 243 | DNA repair protein RAD51 homolog 1; DNA repair, ho | 96.92 | |
| 3t15_A | 293 | Ribulose bisphosphate carboxylase/oxygenase activ | 96.92 | |
| 2obl_A | 347 | ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O | 96.92 | |
| 1ltq_A | 301 | Polynucleotide kinase; phosphatase, alpha/beta, P- | 96.91 | |
| 1q3t_A | 236 | Cytidylate kinase; nucleotide monophosphate kinase | 96.9 | |
| 4f4c_A | 1321 | Multidrug resistance protein PGP-1; ABC transporte | 96.9 | |
| 3gmt_A | 230 | Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucle | 96.86 | |
| 4aby_A | 415 | DNA repair protein RECN; hydrolase, double strand | 96.84 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 96.83 | |
| 1nij_A | 318 | Hypothetical protein YJIA; structural genomics, P- | 96.82 | |
| 1tue_A | 212 | Replication protein E1; helicase, replication, E1E | 96.81 | |
| 2chg_A | 226 | Replication factor C small subunit; DNA-binding pr | 96.81 | |
| 2dpy_A | 438 | FLII, flagellum-specific ATP synthase; beta barrel | 96.81 | |
| 3h4m_A | 285 | Proteasome-activating nucleotidase; ATPase, PAN, A | 96.81 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 96.81 | |
| 2qz4_A | 262 | Paraplegin; AAA+, SPG7, protease, ADP, structural | 96.81 | |
| 1njg_A | 250 | DNA polymerase III subunit gamma; rossman-like fol | 96.8 | |
| 3b9p_A | 297 | CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc | 96.79 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 96.78 | |
| 4f4c_A | 1321 | Multidrug resistance protein PGP-1; ABC transporte | 96.77 | |
| 3cf0_A | 301 | Transitional endoplasmic reticulum ATPase; AAA, P9 | 96.77 | |
| 3syl_A | 309 | Protein CBBX; photosynthesis, rubisco activase, AA | 96.77 | |
| 1nlf_A | 279 | Regulatory protein REPA; replicative DNA helicase | 96.75 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 96.74 | |
| 1vma_A | 306 | Cell division protein FTSY; TM0570, structural gen | 96.74 | |
| 3qkt_A | 339 | DNA double-strand break repair RAD50 ATPase; RECA- | 96.74 | |
| 3ake_A | 208 | Cytidylate kinase; CMP kinase, CMP complex, open c | 96.73 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 96.71 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 96.71 | |
| 1d2n_A | 272 | N-ethylmaleimide-sensitive fusion protein; hexamer | 96.69 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 96.69 | |
| 3g5u_A | 1284 | MCG1178, multidrug resistance protein 1A; P-glycop | 96.69 | |
| 2dhr_A | 499 | FTSH; AAA+ protein, hexameric Zn metalloprotease, | 96.69 | |
| 2dr3_A | 247 | UPF0273 protein PH0284; RECA superfamily ATPase, h | 96.68 | |
| 1l8q_A | 324 | Chromosomal replication initiator protein DNAA; AA | 96.67 | |
| 1c9k_A | 180 | COBU, adenosylcobinamide kinase; alpha/beta struct | 96.65 | |
| 3co5_A | 143 | Putative two-component system transcriptional RES | 96.64 | |
| 2o5v_A | 359 | DNA replication and repair protein RECF; ABC ATPas | 96.64 | |
| 3zvl_A | 416 | Bifunctional polynucleotide phosphatase/kinase; hy | 96.63 | |
| 3ux8_A | 670 | Excinuclease ABC, A subunit; UVRA, nucleotide exci | 96.61 | |
| 4b4t_K | 428 | 26S protease regulatory subunit 6B homolog; hydrol | 96.61 | |
| 4b4t_M | 434 | 26S protease regulatory subunit 6A; hydrolase, AAA | 96.61 | |
| 1zu4_A | 320 | FTSY; GTPase, signal recognition particle, SRP, re | 96.59 | |
| 1pzn_A | 349 | RAD51, DNA repair and recombination protein RAD51, | 96.59 | |
| 2ocp_A | 241 | DGK, deoxyguanosine kinase; protein-nucleotide com | 96.58 | |
| 2h92_A | 219 | Cytidylate kinase; rossmann fold, transferase; HET | 96.58 | |
| 2qmh_A | 205 | HPR kinase/phosphorylase; V267F mutation, ATP-bind | 96.58 | |
| 1ofh_A | 310 | ATP-dependent HSL protease ATP-binding subunit HSL | 96.57 | |
| 4ido_A | 457 | Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HE | 96.57 | |
| 1p5z_B | 263 | DCK, deoxycytidine kinase; nucleoside kinase, P-lo | 96.56 | |
| 1a7j_A | 290 | Phosphoribulokinase; transferase, calvin cycle; 2. | 96.55 | |
| 1xwi_A | 322 | SKD1 protein; VPS4B, AAA ATPase, protein transport | 96.55 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 96.54 | |
| 2qby_A | 386 | CDC6 homolog 1, cell division control protein 6 ho | 96.54 | |
| 3qks_A | 203 | DNA double-strand break repair RAD50 ATPase; RECA- | 96.53 | |
| 2ga8_A | 359 | Hypothetical 39.9 kDa protein; YFR007W, YFH7, unkn | 96.53 | |
| 3cr8_A | 552 | Sulfate adenylyltranferase, adenylylsulfate kinase | 96.52 | |
| 2px0_A | 296 | Flagellar biosynthesis protein FLHF; SRP GTPase, f | 96.51 | |
| 1fnn_A | 389 | CDC6P, cell division control protein 6; ORC1, AAA | 96.51 | |
| 3eie_A | 322 | Vacuolar protein sorting-associated protein 4; AAA | 96.51 | |
| 3crm_A | 323 | TRNA delta(2)-isopentenylpyrophosphate transferase | 96.51 | |
| 1sxj_E | 354 | Activator 1 40 kDa subunit; clamp loader, processi | 96.5 | |
| 4fcw_A | 311 | Chaperone protein CLPB; AAA domain; HET: ADP; 2.35 | 96.5 | |
| 3g5u_A | 1284 | MCG1178, multidrug resistance protein 1A; P-glycop | 96.5 | |
| 4b4t_J | 405 | 26S protease regulatory subunit 8 homolog; hydrola | 96.48 | |
| 3d3q_A | 340 | TRNA delta(2)-isopentenylpyrophosphate transferase | 96.48 | |
| 4b4t_L | 437 | 26S protease subunit RPT4; hydrolase, AAA-atpases, | 96.47 | |
| 1sxj_C | 340 | Activator 1 40 kDa subunit; clamp loader, processi | 96.45 | |
| 2ce7_A | 476 | Cell division protein FTSH; metalloprotease; HET: | 96.45 | |
| 2r62_A | 268 | Cell division protease FTSH homolog; ATPase domain | 96.41 | |
| 3ux8_A | 670 | Excinuclease ABC, A subunit; UVRA, nucleotide exci | 96.41 | |
| 2v1u_A | 387 | Cell division control protein 6 homolog; DNA repli | 96.4 | |
| 3lda_A | 400 | DNA repair protein RAD51; DNA binding protein, ATP | 96.4 |
| >1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-36 Score=205.28 Aligned_cols=172 Identities=62% Similarity=1.097 Sum_probs=147.7
Q ss_pred cccccceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEeCCEEEEEEecCCchhhHHhHHHHhcCCCEEE
Q 030429 6 SLFFKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAIL 85 (177)
Q Consensus 6 ~~~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i 85 (177)
....++.+||+++|++|||||||++++.++.+.....+|.+.....+...++.+.+||+||++++...+..++..+|+++
T Consensus 16 ~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii 95 (188)
T 1zd9_A 16 PRGSKEEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRKITKGNVTIKLWDIGGQPRFRSMWERYCRGVSAIV 95 (188)
T ss_dssp ---CCEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEETTEEEEEEEECCSHHHHTTHHHHHTTCSEEE
T ss_pred ccCCCCccEEEEECCCCCCHHHHHHHHHcCCCCCccCCCCceeEEEEEeCCEEEEEEECCCCHhHHHHHHHHHccCCEEE
Confidence 34556789999999999999999999999888888888999888888889999999999999999999999999999999
Q ss_pred EEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccCHHHHHHHhCcccccCCceeEEEeeecCCCChHHH
Q 030429 86 YVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCKDSINIDAV 165 (177)
Q Consensus 86 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l 165 (177)
+|+|++++.++.....|+..+.......+.|+++|+||+|+.+....+++.+.++.........+++++||++|.|++++
T Consensus 96 ~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~l 175 (188)
T 1zd9_A 96 YMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGALDEKELIEKMNLSAIQDREICCYSISCKEKDNIDIT 175 (188)
T ss_dssp EEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHhCcccCCCCEEEEEECCCCccCCCHHHHHHHhChhhhccCCeeEEEEECCCCCCHHHH
Confidence 99999999999999999998877544467999999999999876666777777765545556778999999999999999
Q ss_pred HHHHHHHhhhcC
Q 030429 166 IDWLIKHSKTAK 177 (177)
Q Consensus 166 ~~~l~~~~~~~~ 177 (177)
|++|.+.+.+++
T Consensus 176 ~~~l~~~~~~~~ 187 (188)
T 1zd9_A 176 LQWLIQHSKSRR 187 (188)
T ss_dssp HHHHHHTCC---
T ss_pred HHHHHHHHHhhc
Confidence 999999887653
|
| >1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ... | Back alignment and structure |
|---|
Probab=100.00 E-value=8.1e-36 Score=199.00 Aligned_cols=164 Identities=32% Similarity=0.620 Sum_probs=140.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEeCCEEEEEEecCCchhhHHhHHHHhcCCCEEEEEEeCCC
Q 030429 13 MELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAAD 92 (177)
Q Consensus 13 ~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~ 92 (177)
+||+++|++|||||||++++.++.+.. ..+|.+.....+..+++.+.+||+||++++...+..+++++|++++|+|+++
T Consensus 1 ~ki~~~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~ 79 (164)
T 1r8s_A 1 MRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSND 79 (164)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHCSSC-CCCCSSCCEEEEECSSCEEEEEECCCCGGGHHHHHHHTTTCSEEEEEEETTC
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCcCc-ccCcCceeEEEEEECCEEEEEEEcCCChhhHHHHHHHhccCCEEEEEEECCC
Confidence 589999999999999999999877654 4667777777788889999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccCHHHHHHHhCcccccCCceeEEEeeecCCCChHHHHHHHHHH
Q 030429 93 RDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCKDSINIDAVIDWLIKH 172 (177)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~ 172 (177)
+.++.....|+..+.......+.|+++|+||+|+.+....+++.+.++........++++++||++|.|+++++++|.+.
T Consensus 80 ~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~ 159 (164)
T 1r8s_A 80 RERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQ 159 (164)
T ss_dssp GGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCSSCCEEEEECBTTTTBTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhchhhcCCeEEEEEECcCCcCCCCHHHHHHHhCcccccCccEEEEEcccCCCcCHHHHHHHHHHH
Confidence 99999999999888776445679999999999998776667777777655555566789999999999999999999998
Q ss_pred hhhcC
Q 030429 173 SKTAK 177 (177)
Q Consensus 173 ~~~~~ 177 (177)
+.+++
T Consensus 160 i~~~k 164 (164)
T 1r8s_A 160 LRNQK 164 (164)
T ss_dssp C----
T ss_pred HhhcC
Confidence 87654
|
| >1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-35 Score=197.31 Aligned_cols=167 Identities=34% Similarity=0.658 Sum_probs=145.4
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEeCCEEEEEEecCCchhhHHhHHHHhcCCCEEEEEEe
Q 030429 10 KQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVD 89 (177)
Q Consensus 10 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d 89 (177)
++.++|+++|++|||||||++++.++.+. ...+|.+.....+..++..+.+|||||++++...+..+++.+|++++|+|
T Consensus 5 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d 83 (171)
T 1upt_A 5 TREMRILILGLDGAGKTTILYRLQVGEVV-TTIPTIGFNVETVTYKNLKFQVWDLGGLTSIRPYWRCYYSNTDAVIYVVD 83 (171)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHSSCC-CCCCCSSEEEEEEEETTEEEEEEEECCCGGGGGGGGGGCTTCSEEEEEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCC-CcCCcCccceEEEEECCEEEEEEECCCChhhhHHHHHHhccCCEEEEEEE
Confidence 46799999999999999999999987765 35667788877888889999999999999999988999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccCHHHHHHHhCcccccCCceeEEEeeecCCCChHHHHHHH
Q 030429 90 AADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCKDSINIDAVIDWL 169 (177)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l 169 (177)
++++.++.....++..+.......+.|+++|+||+|+.+....+++.+.++........++++++||++|.|+++++++|
T Consensus 84 ~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l 163 (171)
T 1upt_A 84 SCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMTSSEMANSLGLPALKDRKWQIFKTSATKGTGLDEAMEWL 163 (171)
T ss_dssp TTCCTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTGGGCTTSCEEEEECCTTTCTTHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHhchhhCCCEEEEEEECCCCcCCCCHHHHHHHhCchhccCCceEEEECcCCCCcCHHHHHHHH
Confidence 99999999999999888776444679999999999998876677777777655555567789999999999999999999
Q ss_pred HHHhhhcC
Q 030429 170 IKHSKTAK 177 (177)
Q Consensus 170 ~~~~~~~~ 177 (177)
.+.+.+++
T Consensus 164 ~~~i~~~q 171 (171)
T 1upt_A 164 VETLKSRQ 171 (171)
T ss_dssp HHHHHTCC
T ss_pred HHHHhhcC
Confidence 99987653
|
| >1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-35 Score=201.05 Aligned_cols=166 Identities=31% Similarity=0.600 Sum_probs=145.0
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEeCCEEEEEEecCCchhhHHhHHHHhcCCCEEEEEEe
Q 030429 10 KQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVD 89 (177)
Q Consensus 10 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d 89 (177)
++.++|+++|++|||||||++++.++. .....+|.+.....+..++..+.+|||||++++...+..+++.+|++++|+|
T Consensus 16 ~~~~~i~v~G~~~~GKssl~~~l~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d 94 (186)
T 1ksh_A 16 ERELRLLMLGLDNAGKTTILKKFNGED-VDTISPTLGFNIKTLEHRGFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVD 94 (186)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHTTCC-CSSCCCCSSEEEEEEEETTEEEEEEEECCSHHHHTTGGGGCTTCSEEEEEEE
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhcCC-CCcccccCccceEEEEECCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEE
Confidence 678999999999999999999999877 6667788888888888889999999999999999888899999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccCHHHHHHHhCcccccCCceeEEEeeecCCCChHHHHHHH
Q 030429 90 AADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCKDSINIDAVIDWL 169 (177)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l 169 (177)
++++.+++....|+..+.......+.|+++|+||+|+.+....++..+.++........++++++||++|.|+++++++|
T Consensus 95 ~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l 174 (186)
T 1ksh_A 95 SADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGALSCNAIQEALELDSIRSHHWRIQGCSAVTGEDLLPGIDWL 174 (186)
T ss_dssp TTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHHHHhChhcCCCcEEEEEeCccCCCCCCHHHHHHHhChhhccCCceEEEEeeCCCCCCHHHHHHHH
Confidence 99999999999999988776444679999999999998876777777777654444567789999999999999999999
Q ss_pred HHHhhhc
Q 030429 170 IKHSKTA 176 (177)
Q Consensus 170 ~~~~~~~ 176 (177)
.+.+.++
T Consensus 175 ~~~i~~~ 181 (186)
T 1ksh_A 175 LDDISSR 181 (186)
T ss_dssp HHHHHTC
T ss_pred HHHHHhc
Confidence 9988653
|
| >1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-35 Score=201.29 Aligned_cols=166 Identities=33% Similarity=0.601 Sum_probs=140.4
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEeCCEEEEEEecCCchhhHHhHHHHhcCCCEEEEEEe
Q 030429 10 KQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVD 89 (177)
Q Consensus 10 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d 89 (177)
++.++|+++|++|||||||++++.++.+ ....+|.+.....+..+++.+.+|||||++.+...+..++..+|++++|+|
T Consensus 14 ~~~~ki~ivG~~~vGKSsL~~~l~~~~~-~~~~~t~g~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d 92 (181)
T 1fzq_A 14 DQEVRILLLGLDNAGKTTLLKQLASEDI-SHITPTQGFNIKSVQSQGFKLNVWDIGGQRKIRPYWRSYFENTDILIYVID 92 (181)
T ss_dssp SSCEEEEEEESTTSSHHHHHHHHCCSCC-EEEEEETTEEEEEEEETTEEEEEEECSSCGGGHHHHHHHHTTCSEEEEEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHhcCCC-CcccCcCCeEEEEEEECCEEEEEEECCCCHHHHHHHHHHhCCCCEEEEEEE
Confidence 5789999999999999999999987644 345567777777778889999999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccCHHHHHHHhCcccccCCceeEEEeeecCCCChHHHHHHH
Q 030429 90 AADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCKDSINIDAVIDWL 169 (177)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l 169 (177)
++++.++.....|+..+.......+.|+++|+||+|+.+....+++.+.++........++++++||++|.|++++|++|
T Consensus 93 ~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l 172 (181)
T 1fzq_A 93 SADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAAPASEIAEGLNLHTIRDRVWQIQSCSALTGEGVQDGMNWV 172 (181)
T ss_dssp TTCGGGHHHHHHHHHHHTTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcCcccCCCHHHHHHHhCchhccCCceEEEEccCCCCCCHHHHHHHH
Confidence 99999999999998888665444678999999999998776666777776654444566789999999999999999999
Q ss_pred HHHhhhc
Q 030429 170 IKHSKTA 176 (177)
Q Consensus 170 ~~~~~~~ 176 (177)
.+.+.++
T Consensus 173 ~~~~~~~ 179 (181)
T 1fzq_A 173 CKNVNAK 179 (181)
T ss_dssp HHTC---
T ss_pred HHHHHhc
Confidence 9987654
|
| >2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-35 Score=203.25 Aligned_cols=169 Identities=31% Similarity=0.605 Sum_probs=141.6
Q ss_pred ccccceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEeCCEEEEEEecCCchhhHHhHHHHhcCCCEEEE
Q 030429 7 LFFKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILY 86 (177)
Q Consensus 7 ~~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~ 86 (177)
+..++.+||+++|++|||||||+++++++.+. ...+|.+.....+..+++.+.+|||||++++...+..++..+|++++
T Consensus 24 ~~~~~~~ki~v~G~~~vGKSsLi~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~iil 102 (192)
T 2b6h_A 24 IFGKKQMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVETVEYKNICFTVWDVGGQDKIRPLWRHYFQNTQGLIF 102 (192)
T ss_dssp TTTTSCEEEEEEESTTSSHHHHHHHHCSSCCE-EEEEETTEEEEEEEETTEEEEEEECC-----CTTHHHHHHTCCEEEE
T ss_pred hccCCccEEEEECCCCCCHHHHHHHHHhCCcc-ccCCcCceeEEEEEECCEEEEEEECCCCHhHHHHHHHHhccCCEEEE
Confidence 45678899999999999999999999977765 34567777777788889999999999999999989999999999999
Q ss_pred EEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccCHHHHHHHhCcccccCCceeEEEeeecCCCChHHHH
Q 030429 87 VVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCKDSINIDAVI 166 (177)
Q Consensus 87 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~ 166 (177)
|+|++++.+++....|+..+.......+.|+++|+||+|+.+....+++.+.++........++++++||++|.|+++++
T Consensus 103 v~D~~~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~ 182 (192)
T 2b6h_A 103 VVDSNDRERVQESADELQKMLQEDELRDAVLLVFANKQDMPNAMPVSELTDKLGLQHLRSRTWYVQATCATQGTGLYDGL 182 (192)
T ss_dssp EEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCSSCCEEEEECBTTTTBTHHHHH
T ss_pred EEECCCHHHHHHHHHHHHHHhcccccCCCeEEEEEECCCCCCCCCHHHHHHHhCcccccCCceEEEECcCCCcCCHHHHH
Confidence 99999999999999999988776544679999999999998776677777777765555567789999999999999999
Q ss_pred HHHHHHhhhc
Q 030429 167 DWLIKHSKTA 176 (177)
Q Consensus 167 ~~l~~~~~~~ 176 (177)
++|.+.+.++
T Consensus 183 ~~l~~~i~~q 192 (192)
T 2b6h_A 183 DWLSHELSKR 192 (192)
T ss_dssp HHHHHHTTTC
T ss_pred HHHHHHHhcC
Confidence 9999988653
|
| >1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-35 Score=201.07 Aligned_cols=168 Identities=28% Similarity=0.521 Sum_probs=141.1
Q ss_pred ccccceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEeCCEEEEEEecCCchhhHHhHHHHhcCCCEEEE
Q 030429 7 LFFKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILY 86 (177)
Q Consensus 7 ~~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~ 86 (177)
+..++.++|+++|.+|||||||++++.++.+. ...+|.+.....+..+++.+.+|||||++++...+..+++.+|++++
T Consensus 11 ~~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~ 89 (187)
T 1zj6_A 11 LFNHQEHKVIIVGLDNAGKTTILYQFSMNEVV-HTSPTIGSNVEEIVINNTRFLMWDIGGQESLRSSWNTYYTNTEFVIV 89 (187)
T ss_dssp HHTTSCEEEEEEESTTSSHHHHHHHHHTTSCE-EEECCSCSSCEEEEETTEEEEEEECCC----CGGGHHHHTTCCEEEE
T ss_pred hcCCCccEEEEECCCCCCHHHHHHHHhcCCCC-cCcCCCccceEEEEECCEEEEEEECCCCHhHHHHHHHHhcCCCEEEE
Confidence 34578899999999999999999999987776 56677777777888889999999999999999888999999999999
Q ss_pred EEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccCHHHHHHHhCcccccCCceeEEEeeecCCCChHHHH
Q 030429 87 VVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCKDSINIDAVI 166 (177)
Q Consensus 87 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~ 166 (177)
|+|++++++++....|+..+.......+.|+++|+||+|+.+....+++.+.++........++++++||++|.|+++++
T Consensus 90 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~ 169 (187)
T 1zj6_A 90 VVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQGL 169 (187)
T ss_dssp EEETTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTGGGCCSSCEEEEECBTTTTBTHHHHH
T ss_pred EEeCCCHHHHHHHHHHHHHHHhchhhCCCeEEEEEECCCCcCCCCHHHHHHHhChhhhcCCCcEEEEccCCCCcCHHHHH
Confidence 99999999999999999988775434579999999999998766667777776654344556789999999999999999
Q ss_pred HHHHHHhhh
Q 030429 167 DWLIKHSKT 175 (177)
Q Consensus 167 ~~l~~~~~~ 175 (177)
++|.+.+.+
T Consensus 170 ~~l~~~~~~ 178 (187)
T 1zj6_A 170 EWMMSRLKI 178 (187)
T ss_dssp HHHHHHHCC
T ss_pred HHHHHHHHH
Confidence 999998754
|
| >4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-35 Score=203.19 Aligned_cols=170 Identities=26% Similarity=0.564 Sum_probs=143.5
Q ss_pred ccccceeEEEEEcCCCCCHHHHHHHHhcCCCCC-CCCCccceeEEEEEeCCEEEEEEecCCchhhHHhHHHHhcCCCEEE
Q 030429 7 LFFKQEMELSLIGLQNAGKTSLVNTIATGGYSE-DMIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAIL 85 (177)
Q Consensus 7 ~~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i 85 (177)
-......+|+++|.+|||||||+++|.++.+.. .+.+|.+.....+...++.+.+|||||++++...+..+++.+|+++
T Consensus 12 ~~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii 91 (199)
T 4bas_A 12 GQSKTKLQVVMCGLDNSGKTTIINQVKPAQSSSKHITATVGYNVETFEKGRVAFTVFDMGGAKKFRGLWETYYDNIDAVI 91 (199)
T ss_dssp ----CEEEEEEECCTTSCHHHHHHHHSCCC----CCCCCSSEEEEEEEETTEEEEEEEECCSGGGGGGGGGGCTTCSEEE
T ss_pred cCCCCCcEEEEECCCCCCHHHHHHHHhcCCCcccccccccceeEEEEEeCCEEEEEEECCCCHhHHHHHHHHHhcCCEEE
Confidence 345678999999999999999999999988887 7788999888888899999999999999999999999999999999
Q ss_pred EEEeCCCCCCHHHHHHHHHHHHcCCCC-------CCCcEEEEeeCCCcccccCHHHHHHHhCcccc-cCCceeEEEeeec
Q 030429 86 YVVDAADRDSVPIARSELHELLMKPSL-------SGIPLLVLGNKIDKSEALSKQALVDQLGLESI-TDREVCCYMISCK 157 (177)
Q Consensus 86 ~v~d~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Sa~ 157 (177)
+|+|++++.++.....|+..+...... .+.|+++|+||+|+.+....+++.+.++.... ....++++++||+
T Consensus 92 ~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 171 (199)
T 4bas_A 92 FVVDSSDHLRLCVVKSEIQAMLKHEDIRRELPGGGRVPFLFFANKMDAAGAKTAAELVEILDLTTLMGDHPFVIFASNGL 171 (199)
T ss_dssp EEEETTCGGGHHHHHHHHHHHHTSHHHHSBCTTSCBCCEEEEEECTTSTTCCCHHHHHHHHTHHHHHTTSCEEEEECBTT
T ss_pred EEEECCcHHHHHHHHHHHHHHHhChhhhhcccccCCCCEEEEEECcCCCCCCCHHHHHHHhcchhhccCCeeEEEEeeCC
Confidence 999999999999999999888665221 27899999999999888777777777765443 4466789999999
Q ss_pred CCCChHHHHHHHHHHhhhc
Q 030429 158 DSINIDAVIDWLIKHSKTA 176 (177)
Q Consensus 158 ~~~~i~~l~~~l~~~~~~~ 176 (177)
+|.|++++|++|.+.+.++
T Consensus 172 ~g~gv~~l~~~l~~~~~~~ 190 (199)
T 4bas_A 172 KGTGVHEGFSWLQETASRQ 190 (199)
T ss_dssp TTBTHHHHHHHHHHHHHHH
T ss_pred CccCHHHHHHHHHHHHHHH
Confidence 9999999999999987653
|
| >4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.5e-36 Score=208.60 Aligned_cols=157 Identities=22% Similarity=0.383 Sum_probs=121.5
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEE--EE--eCCEEEEEEecCCchhhHHhHHHHhcCCCEEE
Q 030429 10 KQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRK--VT--KGNVTIKLWDLGGQRRFRTMWERYCRGVSAIL 85 (177)
Q Consensus 10 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~--~~--~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i 85 (177)
.+.+||+++|++|||||||+++|+.+.+...+.+|.+..... +. ...+.+++|||+|+++|..+...+++++++++
T Consensus 11 ~k~~KivlvGd~~VGKTsLi~r~~~~~f~~~~~~Tig~d~~~k~~~~~~~~v~l~iwDtaGqe~~~~l~~~~~~~a~~~i 90 (216)
T 4dkx_A 11 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGLERFRSLIPSYIRDSAAAV 90 (216)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHHSCCC----------CEEEEEECSSCEEEEEEECCSCTTTCGGGHHHHHTTCSEEE
T ss_pred CCcEEEEEECcCCcCHHHHHHHHHhCCCCCCcCCccceEEEEEEEEecceEEEEEEEECCCchhhhhHHHHHhccccEEE
Confidence 457999999999999999999999999999989988855443 33 34588999999999999999999999999999
Q ss_pred EEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccc--CHH---HHHHHhCcccccCCceeEEEeeecCCC
Q 030429 86 YVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEAL--SKQ---ALVDQLGLESITDREVCCYMISCKDSI 160 (177)
Q Consensus 86 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~--~~~---~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 160 (177)
+|||++++.+|+++..|+..+..... .+.|+++|+||+|+.+.. ..+ ++.+.+ +++|++|||++|.
T Consensus 91 lv~di~~~~Sf~~i~~~~~~i~~~~~-~~~piilVgNK~Dl~~~r~V~~~e~~~~a~~~--------~~~~~e~SAktg~ 161 (216)
T 4dkx_A 91 VVYDITNVNSFQQTTKWIDDVRTERG-SDVIIMLVGNKTDLADKRQVSIEEGERKAKEL--------NVMFIETSAKAGY 161 (216)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHHT-TSSEEEEEEECTTCGGGCCSCHHHHHHHHHHH--------TCEEEEEBTTTTB
T ss_pred EEeecchhHHHHHHHHHHHHHHHhcC-CCCeEEEEeeccchHhcCcccHHHHhhHHHHh--------CCeeEEEeCCCCc
Confidence 99999999999999999998865432 578999999999997643 222 233333 2479999999999
Q ss_pred ChHHHHHHHHHHhhh
Q 030429 161 NIDAVIDWLIKHSKT 175 (177)
Q Consensus 161 ~i~~l~~~l~~~~~~ 175 (177)
||+++|+.|++.+.+
T Consensus 162 nV~e~F~~i~~~i~~ 176 (216)
T 4dkx_A 162 NVKQLFRRVAAALPG 176 (216)
T ss_dssp SHHHHHHHHHHHC--
T ss_pred CHHHHHHHHHHHHHh
Confidence 999999999987753
|
| >2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-35 Score=200.18 Aligned_cols=166 Identities=34% Similarity=0.601 Sum_probs=144.9
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEeCCEEEEEEecCCchhhHHhHHHHhcCCCEEEEEEe
Q 030429 10 KQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVD 89 (177)
Q Consensus 10 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d 89 (177)
++.+||+++|++|||||||++++.++.+.. ..+|.+.....+..++..+.+|||||++++...+..+++.+|++++|+|
T Consensus 20 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d 98 (189)
T 2x77_A 20 DRKIRVLMLGLDNAGKTSILYRLHLGDVVT-TVPTVGVNLETLQYKNISFEVWDLGGQTGVRPYWRCYFSDTDAVIYVVD 98 (189)
T ss_dssp TSCEEEEEEEETTSSHHHHHHHTCCSCCEE-ECSSTTCCEEEEEETTEEEEEEEECCSSSSCCCCSSSSTTCCEEEEEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHcCCCCC-cCCCCceEEEEEEECCEEEEEEECCCCHhHHHHHHHHhhcCCEEEEEEe
Confidence 688999999999999999999998776653 5567777777888889999999999999988888888999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccCHHHHHHHhCcccccCCceeEEEeeecCCCChHHHHHHH
Q 030429 90 AADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCKDSINIDAVIDWL 169 (177)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l 169 (177)
+++++++.....++..+.......+.|+++|+||+|+.+....+++.+.++........++++++||++|.|+++++++|
T Consensus 99 ~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l 178 (189)
T 2x77_A 99 STDRDRMGVAKHELYALLDEDELRKSLLLIFANKQDLPDAASEAEIAEQLGVSSIMNRTWTIVKSSSKTGDGLVEGMDWL 178 (189)
T ss_dssp TTCCTTHHHHHHHHHHHHTCSTTTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHhhhhcCCCeEEEEEECCCCcCCCCHHHHHHHhChhhccCCceEEEEccCCCccCHHHHHHHH
Confidence 99999999999999988776555689999999999998876667777777655555567789999999999999999999
Q ss_pred HHHhhhc
Q 030429 170 IKHSKTA 176 (177)
Q Consensus 170 ~~~~~~~ 176 (177)
.+.+.++
T Consensus 179 ~~~i~~~ 185 (189)
T 2x77_A 179 VERLREQ 185 (189)
T ss_dssp HHHHHHT
T ss_pred HHHHHhc
Confidence 9988764
|
| >1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-35 Score=198.97 Aligned_cols=166 Identities=33% Similarity=0.599 Sum_probs=141.0
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEeCCEEEEEEecCCchhhHHhHHHHhcCCCEEEEEEe
Q 030429 10 KQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVD 89 (177)
Q Consensus 10 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d 89 (177)
++.++|+++|++|||||||++++.++.+ ....+|.+.....+..++..+.+||+||+.++...+..++..+|++++|+|
T Consensus 16 ~~~~~i~v~G~~~~GKssli~~l~~~~~-~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d 94 (183)
T 1moz_A 16 NKELRILILGLDGAGKTTILYRLQIGEV-VTTKPTIGFNVETLSYKNLKLNVWDLGGQTSIRPYWRCYYADTAAVIFVVD 94 (183)
T ss_dssp SSCEEEEEEEETTSSHHHHHHHTCCSEE-EEECSSTTCCEEEEEETTEEEEEEEEC----CCTTGGGTTTTEEEEEEEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCc-CccCCcCccceEEEEECCEEEEEEECCCCHhHHHHHHHHhccCCEEEEEEE
Confidence 7889999999999999999999997766 556677787777888889999999999999988888889999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccCHHHHHHHhCcccccCCceeEEEeeecCCCChHHHHHHH
Q 030429 90 AADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCKDSINIDAVIDWL 169 (177)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l 169 (177)
++++.+++....|+..+.......+.|+++|+||+|+.+....+++.+.++........++++++||++|.|+++++++|
T Consensus 95 ~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l 174 (183)
T 1moz_A 95 STDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPGALSASEVSKELNLVELKDRSWSIVASSAIKGEGITEGLDWL 174 (183)
T ss_dssp TTCTTTHHHHHHHHHHHTTSSTTSSCEEEEEEECTTSTTCCCHHHHHHHTTTTTCCSSCEEEEEEBGGGTBTHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHcChhhCCCeEEEEEECCCCCCCCCHHHHHHHhCcccccCCceEEEEccCCCCcCHHHHHHHH
Confidence 99999999999999998776545689999999999998776677777777655455566789999999999999999999
Q ss_pred HHHhhhc
Q 030429 170 IKHSKTA 176 (177)
Q Consensus 170 ~~~~~~~ 176 (177)
.+.+.++
T Consensus 175 ~~~~~~~ 181 (183)
T 1moz_A 175 IDVIKEE 181 (183)
T ss_dssp HHHHHHH
T ss_pred HHHHHhc
Confidence 9988653
|
| >2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.9e-35 Score=198.52 Aligned_cols=164 Identities=27% Similarity=0.497 Sum_probs=139.6
Q ss_pred cccceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEeCCEEEEEEecCCchhhHHhHHHHhcCCCEEEEE
Q 030429 8 FFKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYV 87 (177)
Q Consensus 8 ~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v 87 (177)
...+.+||+++|.+|||||||++++.++.+ ....+|.+.....+..++..+.+||+||++++...+..+++.+|++++|
T Consensus 17 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~-~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v 95 (181)
T 2h17_A 17 RGSQEHKVIIVGLDNAGKTTILYQFSMNEV-VHTSPTIGSNVEEIVINNTRFLMWDIGGQESLRSSWNTYYTNTEFVIVV 95 (181)
T ss_dssp ----CEEEEEEEETTSSHHHHHHHHHTTSC-EEEECCSSSSCEEEEETTEEEEEEEESSSGGGTCGGGGGGTTCCEEEEE
T ss_pred CCCceeEEEEECCCCCCHHHHHHHHhcCCC-CccCCcCceeeEEEEECCEEEEEEECCCCHhHHHHHHHHhccCCEEEEE
Confidence 455779999999999999999999998877 5566777777777888899999999999999998888999999999999
Q ss_pred EeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccCHHHHHHHhCcccccCCceeEEEeeecCCCChHHHHH
Q 030429 88 VDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCKDSINIDAVID 167 (177)
Q Consensus 88 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~ 167 (177)
+|++++.++.....|+..+.......+.|+++|+||+|+.+....+++.+.++........++++++||++|.|++++|+
T Consensus 96 ~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~ 175 (181)
T 2h17_A 96 VDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQGLE 175 (181)
T ss_dssp EETTCTTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECBTTTTBTHHHHHH
T ss_pred EECCCHHHHHHHHHHHHHHHhChhhCCCeEEEEEECCCcccCCCHHHHHHHhCcccccCCceEEEEccCCCCcCHHHHHH
Confidence 99999999999999999887754346799999999999987666677777776554455667899999999999999999
Q ss_pred HHHHH
Q 030429 168 WLIKH 172 (177)
Q Consensus 168 ~l~~~ 172 (177)
+|.+.
T Consensus 176 ~l~~~ 180 (181)
T 2h17_A 176 WMMSR 180 (181)
T ss_dssp HHHTC
T ss_pred HHHhh
Confidence 99864
|
| >2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=8e-35 Score=198.85 Aligned_cols=169 Identities=30% Similarity=0.594 Sum_probs=141.3
Q ss_pred cccceeEEEEEcCCCCCHHHHHHHHhcCC-CCCCCCCccceeEEEEEeCCEEEEEEecCCchhhHHhHHHHhcCCCEEEE
Q 030429 8 FFKQEMELSLIGLQNAGKTSLVNTIATGG-YSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILY 86 (177)
Q Consensus 8 ~~~~~~~i~i~G~~~~GKSsli~~l~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~ 86 (177)
...+.+||+++|.+|||||||++++.++. +.....+|.+.....+..++..+.+|||||++++...+..++..+|++++
T Consensus 17 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~ 96 (190)
T 2h57_A 17 RGSKEVHVLCLGLDNSGKTTIINKLKPSNAQSQNILPTIGFSIEKFKSSSLSFTVFDMSGQGRYRNLWEHYYKEGQAIIF 96 (190)
T ss_dssp ----CEEEEEEECTTSSHHHHHHHTSCGGGCCSSCCCCSSEEEEEEECSSCEEEEEEECCSTTTGGGGGGGGGGCSEEEE
T ss_pred CCCCccEEEEECCCCCCHHHHHHHHhcCCCCCCCcCCccceeEEEEEECCEEEEEEECCCCHHHHHHHHHHHhcCCEEEE
Confidence 34567999999999999999999999877 56667788888888888889999999999999999988899999999999
Q ss_pred EEeCCCCCCHHHHHHHHHHHHcCCCC--CCCcEEEEeeCCCcccccCHHHHHHHhCcccccCCceeEEEeeecCCCChHH
Q 030429 87 VVDAADRDSVPIARSELHELLMKPSL--SGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCKDSINIDA 164 (177)
Q Consensus 87 v~d~~~~~~~~~~~~~~~~~~~~~~~--~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 164 (177)
|+|++++.++.....|+..+...... .+.|+++|+||+|+.+....++..+.+.........++++++||++|.|+++
T Consensus 97 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 176 (190)
T 2h57_A 97 VIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFANKMDLRDAVTSVKVSQLLCLENIKDKPWHICASDAIKGEGLQE 176 (190)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHSTTTTTSCCCEEEEEECTTSTTCCCHHHHHHHHTGGGCCSSCEEEEECBTTTTBTHHH
T ss_pred EEECCCHHHHHHHHHHHHHHHhChhhccCCCeEEEEEeCcCcccCCCHHHHHHHhChhhccCCceEEEEccCCCCcCHHH
Confidence 99999998999999999888776544 5789999999999987666667776665444334567899999999999999
Q ss_pred HHHHHHHHhhhc
Q 030429 165 VIDWLIKHSKTA 176 (177)
Q Consensus 165 l~~~l~~~~~~~ 176 (177)
++++|.+.+.+.
T Consensus 177 l~~~l~~~i~~~ 188 (190)
T 2h57_A 177 GVDWLQDQIQTV 188 (190)
T ss_dssp HHHHHHHHC---
T ss_pred HHHHHHHHHHHh
Confidence 999999988654
|
| >1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.1e-34 Score=195.03 Aligned_cols=162 Identities=32% Similarity=0.527 Sum_probs=135.8
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEeCCEEEEEEecCCchhhHHhHHHHhcCCCEEEEEEe
Q 030429 10 KQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVD 89 (177)
Q Consensus 10 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d 89 (177)
.+.++|+++|++|||||||++++.++.+. .+.+|.+.....+..+++.+.+|||||++.++..+..+++.+|++++|+|
T Consensus 21 ~~~~ki~~vG~~~vGKSsli~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d 99 (190)
T 1m2o_B 21 NKHGKLLFLGLDNAGKTTLLHMLKNDRLA-TLQPTWHPTSEELAIGNIKFTTFDLGGHIQARRLWKDYFPEVNGIVFLVD 99 (190)
T ss_dssp ---CEEEEEESTTSSHHHHHHHHHHSCCC-CCCCCCSCEEEEEEETTEEEEEEECCCSGGGTTSGGGGCTTCCEEEEEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCC-ccccCCCCCeEEEEECCEEEEEEECCCCHHHHHHHHHHHhcCCEEEEEEE
Confidence 45689999999999999999999987765 45677777777888889999999999999998888889999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccCHHHHHHHhCccc-------ccCCceeEEEeeecCCCCh
Q 030429 90 AADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLES-------ITDREVCCYMISCKDSINI 162 (177)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~Sa~~~~~i 162 (177)
++++.+++....|+..+.......+.|+++|+||+|+.+....++..+.++... .....++++++||++|.|+
T Consensus 100 ~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi 179 (190)
T 1m2o_B 100 AADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPNAVSEAELRSALGLLNTTGSQRIEGQRPVEVFMCSVVMRNGY 179 (190)
T ss_dssp TTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTTCSSCCC---CCSSCCEEEEECBTTTTBSH
T ss_pred CCChHHHHHHHHHHHHHHcchhhcCCCEEEEEECCCCcCCCCHHHHHHHhCCccccccccccccceEEEEEeECCcCCCH
Confidence 999999999999999887654446799999999999987656666766665432 1234578999999999999
Q ss_pred HHHHHHHHHH
Q 030429 163 DAVIDWLIKH 172 (177)
Q Consensus 163 ~~l~~~l~~~ 172 (177)
+++|++|.+.
T Consensus 180 ~~l~~~l~~~ 189 (190)
T 1m2o_B 180 LEAFQWLSQY 189 (190)
T ss_dssp HHHHHHHHTT
T ss_pred HHHHHHHHhh
Confidence 9999999865
|
| >1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.2e-34 Score=196.64 Aligned_cols=163 Identities=29% Similarity=0.565 Sum_probs=129.5
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEeCCEEEEEEecCCchhhHHhHHHHhcCCCEEEEEEe
Q 030429 10 KQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVD 89 (177)
Q Consensus 10 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d 89 (177)
.+.++|+++|++|||||||++++.++.+. .+.+|.+.....+..+++.+.+|||||++.++..+..+++++|++++|+|
T Consensus 23 ~~~~ki~lvG~~~vGKSsLi~~l~~~~~~-~~~~t~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D 101 (198)
T 1f6b_A 23 KKTGKLVFLGLDNAGKTTLLHMLKDDRLG-QHVPTLHPTSEELTIAGMTFTTFDLGGHIQARRVWKNYLPAINGIVFLVD 101 (198)
T ss_dssp TCCEEEEEEEETTSSHHHHHHHHSCC-------CCCCCSCEEEEETTEEEEEEEECC----CCGGGGGGGGCSEEEEEEE
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhcCCCC-ccCCCCCceeEEEEECCEEEEEEECCCcHhhHHHHHHHHhcCCEEEEEEE
Confidence 45689999999999999999999977664 45567777777788888999999999999998888889999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccCHHHHHHHhCccc---------c---cCCceeEEEeeec
Q 030429 90 AADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLES---------I---TDREVCCYMISCK 157 (177)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~---------~---~~~~~~~~~~Sa~ 157 (177)
++++.++.....|+..+.......+.|+++|+||+|+.+....++..+.++... . ....+++++|||+
T Consensus 102 ~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~ 181 (198)
T 1f6b_A 102 CADHERLLESKEELDSLMTDETIANVPILILGNKIDRPEAISEERLREMFGLYGQTTGKGSVSLKELNARPLEVFMCSVL 181 (198)
T ss_dssp TTCGGGHHHHHHHHHHHHTCGGGTTSCEEEEEECTTSTTCCCHHHHHHHHTCTTTCCCSSCCCTTTCCSCCEEEEECBTT
T ss_pred CCCHHHHHHHHHHHHHHHhCcccCCCcEEEEEECCCccccCCHHHHHHHhCcccccccccccccccccCceEEEEEEECC
Confidence 999999999999999887654446799999999999987555666666654321 1 1245789999999
Q ss_pred CCCChHHHHHHHHHHh
Q 030429 158 DSINIDAVIDWLIKHS 173 (177)
Q Consensus 158 ~~~~i~~l~~~l~~~~ 173 (177)
+|.|++++|++|.+.+
T Consensus 182 ~g~gv~~l~~~l~~~l 197 (198)
T 1f6b_A 182 KRQGYGEGFRWMAQYI 197 (198)
T ss_dssp TTBSHHHHHHHHHTTC
T ss_pred CCCCHHHHHHHHHHhc
Confidence 9999999999998764
|
| >3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.4e-34 Score=208.67 Aligned_cols=169 Identities=33% Similarity=0.623 Sum_probs=143.4
Q ss_pred cccceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEeCCEEEEEEecCCchhhHHhHHHHhcCCCEEEEE
Q 030429 8 FFKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYV 87 (177)
Q Consensus 8 ~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v 87 (177)
..++.+||+++|.+|||||||+++|.++.+... .+|.+.....+...++.+.+|||||++.+...+..+++.+|++++|
T Consensus 161 ~~~~~~kI~ivG~~~vGKSsLl~~l~~~~~~~~-~pT~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~vilV 239 (329)
T 3o47_A 161 FGKKEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFV 239 (329)
T ss_dssp --CCSEEEEEEESTTSSHHHHHHHTCSSCCEEE-EEETTEEEEEEEETTEEEEEEECC-----CCSHHHHHTTEEEEEEE
T ss_pred cccCcceEEEECCCCccHHHHHHHHhCCCCCCc-ccccceEEEEEecCcEEEEEEECCCCHhHHHHHHHHhccCCEEEEE
Confidence 345678999999999999999999998776544 3688888888889999999999999999999999999999999999
Q ss_pred EeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccCHHHHHHHhCcccccCCceeEEEeeecCCCChHHHHH
Q 030429 88 VDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCKDSINIDAVID 167 (177)
Q Consensus 88 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~ 167 (177)
+|++++.++.....++..+.......++|+++|+||+|+.+....+++.+.++........++++++||++|.|++++|+
T Consensus 240 ~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~vSAk~g~gi~el~~ 319 (329)
T 3o47_A 240 VDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLD 319 (329)
T ss_dssp EETTCSSSHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTCTTCCSSCEEEEECBTTTTBTHHHHHH
T ss_pred EECCchHHHHHHHHHHHHHHhhhccCCCeEEEEEECccCCcccCHHHHHHHhchhhhhcCCCEEEEEECCCCcCHHHHHH
Confidence 99999999999999999987775556899999999999998877888888888766666788999999999999999999
Q ss_pred HHHHHhhhcC
Q 030429 168 WLIKHSKTAK 177 (177)
Q Consensus 168 ~l~~~~~~~~ 177 (177)
+|.+.+.+++
T Consensus 320 ~l~~~l~~~k 329 (329)
T 3o47_A 320 WLSNQLRNQK 329 (329)
T ss_dssp HHHHHHTC--
T ss_pred HHHHHHHhcC
Confidence 9999987654
|
| >3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=4.1e-33 Score=189.60 Aligned_cols=160 Identities=18% Similarity=0.277 Sum_probs=125.6
Q ss_pred cccceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEeCC--EEEEEEecCCchhhHHhHHHHhcCCCEEE
Q 030429 8 FFKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTKGN--VTIKLWDLGGQRRFRTMWERYCRGVSAIL 85 (177)
Q Consensus 8 ~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~~i 85 (177)
...+.+||+++|++|||||||+++++++.+...+.++.+.....+..++ +.+.+|||+|++.+. ++..+|+++
T Consensus 16 ~~~~~~ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~-----~~~~~~~~i 90 (184)
T 3ihw_A 16 FQGPELKVGIVGNLSSGKSALVHRYLTGTYVQEESPEGGRFKKEIVVDGQSYLLLIRDEGGPPELQ-----FAAWVDAVV 90 (184)
T ss_dssp CCCCEEEEEEECCTTSCHHHHHHHHHHSSCCCCCCTTCEEEEEEEEETTEEEEEEEEECSSSCCHH-----HHHHCSEEE
T ss_pred CCCCeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCCcceEEEEEEECCEEEEEEEEECCCChhhh-----eecCCCEEE
Confidence 4467899999999999999999999999888777777554444555555 678889999998877 567799999
Q ss_pred EEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccc----cCHHHHHHHhCcccccCCceeEEEeeecCCCC
Q 030429 86 YVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEA----LSKQALVDQLGLESITDREVCCYMISCKDSIN 161 (177)
Q Consensus 86 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 161 (177)
+|||++++.+++.+..|+..+.......+.|+++|+||+|+.+. ...++..+.... ....+++++||++|.|
T Consensus 91 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~----~~~~~~~e~Sa~~~~g 166 (184)
T 3ihw_A 91 FVFSLEDEISFQTVYNYFLRLCSFRNASEVPMVLVGTQDAISAANPRVIDDSRARKLSTD----LKRCTYYETCATYGLN 166 (184)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHTTSCGGGSCEEEEEECTTCBTTBCCCSCHHHHHHHHHH----TTTCEEEEEBTTTTBT
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccccCHHHHHHHHHH----cCCCeEEEecCCCCCC
Confidence 99999999999999999998877654467899999999998521 122222222111 1124799999999999
Q ss_pred hHHHHHHHHHHhhhc
Q 030429 162 IDAVIDWLIKHSKTA 176 (177)
Q Consensus 162 i~~l~~~l~~~~~~~ 176 (177)
++++|++|.+.+.++
T Consensus 167 v~~lf~~l~~~i~~~ 181 (184)
T 3ihw_A 167 VERVFQDVAQKVVAL 181 (184)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999987754
|
| >3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.7e-33 Score=185.90 Aligned_cols=160 Identities=15% Similarity=0.138 Sum_probs=105.5
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEE-E--EEeCCEEEEEEecCCchhhHHhHHHHhcCCCEEEEEE
Q 030429 12 EMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMR-K--VTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVV 88 (177)
Q Consensus 12 ~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~--~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~ 88 (177)
.+||+++|++|||||||++++.+...... .++.+.... . +....+.+.+||+||++.+...+..++..+|++++|+
T Consensus 2 ~~ki~~vG~~~~GKSsli~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~ 80 (166)
T 3q72_A 2 VYKVLLLGAPGVGKSALARIFGGVEDGPE-AEAAGHTYDRSIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIVY 80 (166)
T ss_dssp CCEEEEEESTTSSHHHHHHHHCCC-----------CEEEEEEEETTEEEEEEEEECC---------------CCEEEEEE
T ss_pred eEEEEEECCCCCCHHHHHHHHcCccccCC-CCccccceEEEEEECCEEEEEEEEECCCCccchhhhhhhhhhCCEEEEEE
Confidence 57999999999999999999986554322 222222221 2 3334578899999999999999999999999999999
Q ss_pred eCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccC--HHHHHHHhCcccccCCceeEEEeeecCCCChHHHH
Q 030429 89 DAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALS--KQALVDQLGLESITDREVCCYMISCKDSINIDAVI 166 (177)
Q Consensus 89 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~ 166 (177)
|++++.+++....|+..+.......+.|+++|+||+|+.+... .++..+... ..+++++++||++|.|++++|
T Consensus 81 d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~gi~~l~ 155 (166)
T 3q72_A 81 SVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSREVSVDEGRACAV-----VFDCKFIETSAALHHNVQALF 155 (166)
T ss_dssp ETTCHHHHHHHHHHHHHHHHCC---CCCEEEEEECTTCCSSCCSCHHHHHHHHH-----HTTCEEEECBGGGTBSHHHHH
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccccccccccCHHHHHHHHH-----HhCCcEEEeccCCCCCHHHHH
Confidence 9999999999999999988766557899999999999975432 222211111 122479999999999999999
Q ss_pred HHHHHHhhhcC
Q 030429 167 DWLIKHSKTAK 177 (177)
Q Consensus 167 ~~l~~~~~~~~ 177 (177)
++|.+.+.++|
T Consensus 156 ~~l~~~~~~~r 166 (166)
T 3q72_A 156 EGVVRQIRLRR 166 (166)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHHHHhcC
Confidence 99999988765
|
| >1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-33 Score=188.33 Aligned_cols=159 Identities=26% Similarity=0.374 Sum_probs=126.3
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEE--EEEeC--CEEEEEEecCCchhhHHhHHHHhcCCCEEEE
Q 030429 11 QEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMR--KVTKG--NVTIKLWDLGGQRRFRTMWERYCRGVSAILY 86 (177)
Q Consensus 11 ~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~--~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~ 86 (177)
..+||+++|++|||||||++++.++.+.....++.+.... .+..+ .+.+.+||+||+..+...+..+++.+|++++
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i~ 81 (170)
T 1ek0_A 2 TSIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLAPXYYRNAQAALV 81 (170)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEE
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCChhhhhhhhhhhccCcEEEE
Confidence 3589999999999999999999988887777777764443 33343 4689999999999999999999999999999
Q ss_pred EEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccc---C--HHHHHHHhCcccccCCceeEEEeeecCCCC
Q 030429 87 VVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEAL---S--KQALVDQLGLESITDREVCCYMISCKDSIN 161 (177)
Q Consensus 87 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~---~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 161 (177)
|+|++++.++.....|+..+.... ..+.|+++|+||+|+.+.. . .++..+... ..+++++++||++|.|
T Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~-----~~~~~~~~~Sa~~~~g 155 (170)
T 1ek0_A 82 VYDVTKPQSFIKARHWVKELHEQA-SKDIIIALVGNKIDXLQEGGERKVAREEGEKLAE-----EKGLLFFETSAKTGEN 155 (170)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHS-CTTCEEEEEEECGGGGGSSCCCCSCHHHHHHHHH-----HHTCEEEECCTTTCTT
T ss_pred EEecCChHHHHHHHHHHHHHHHhc-CCCCcEEEEEECCCccccccccCCCHHHHHHHHH-----HcCCEEEEEeCCCCCC
Confidence 999999999999988888876543 2578999999999987542 1 112111111 1124799999999999
Q ss_pred hHHHHHHHHHHhhh
Q 030429 162 IDAVIDWLIKHSKT 175 (177)
Q Consensus 162 i~~l~~~l~~~~~~ 175 (177)
++++|++|.+.+.+
T Consensus 156 i~~l~~~l~~~i~~ 169 (170)
T 1ek0_A 156 VNDVFLGIGEKIPL 169 (170)
T ss_dssp HHHHHHHHHTTSCC
T ss_pred HHHHHHHHHHHHhh
Confidence 99999999987754
|
| >3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-32 Score=190.05 Aligned_cols=164 Identities=20% Similarity=0.279 Sum_probs=127.1
Q ss_pred ecccccceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEE---EEeCCEEEEEEecCCchhhHHhHHHHhcCC
Q 030429 5 ISLFFKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRK---VTKGNVTIKLWDLGGQRRFRTMWERYCRGV 81 (177)
Q Consensus 5 ~~~~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~---~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~ 81 (177)
..+...+.+||+++|.+|||||||+++|.++.+...+.++.+..... .....+.+.+|||||++.+...+..++..+
T Consensus 17 q~~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~ 96 (201)
T 3oes_A 17 QGMPLVRYRKVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTYSKIVTLGKDEFHLHLVDTAGQDEYSILPYSFIIGV 96 (201)
T ss_dssp ------CEEEEEEEESTTSSHHHHHHHHHHSCCCSCCCCCSEEEEEEEEC----CEEEEEEEECCCCTTCCCCGGGTTTC
T ss_pred CCCCCCCcEEEEEECCCCcCHHHHHHHHHhCCCCCCCCCccceEEEEEEEECCEEEEEEEEECCCccchHHHHHHHHhcC
Confidence 34556788999999999999999999999998887777777754432 334568899999999999988888999999
Q ss_pred CEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccCH--H---HHHHHhCcccccCCceeEEEeee
Q 030429 82 SAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSK--Q---ALVDQLGLESITDREVCCYMISC 156 (177)
Q Consensus 82 d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~--~---~~~~~~~~~~~~~~~~~~~~~Sa 156 (177)
|++++|+|++++.+++.+..|+..+.......++|+++|+||+|+.+.... . ++.+.. +++++++||
T Consensus 97 d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~--------~~~~~~~Sa 168 (201)
T 3oes_A 97 HGYVLVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVGNKADLSPEREVQAVEGKKLAESW--------GATFMESSA 168 (201)
T ss_dssp CEEEEEEETTCHHHHHHHHHHHHHHHC-----CCCEEEEEECTTCGGGCCSCHHHHHHHHHHH--------TCEEEECCT
T ss_pred CEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCccccccCHHHHHHHHHHh--------CCeEEEEeC
Confidence 999999999999999999999999877766567999999999998754321 2 222222 237999999
Q ss_pred cCCCChHHHHHHHHHHhhhc
Q 030429 157 KDSINIDAVIDWLIKHSKTA 176 (177)
Q Consensus 157 ~~~~~i~~l~~~l~~~~~~~ 176 (177)
++|.|++++|++|.+.+.+.
T Consensus 169 ~~~~~v~~l~~~l~~~i~~~ 188 (201)
T 3oes_A 169 RENQLTQGIFTKVIQEIARV 188 (201)
T ss_dssp TCHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCHHHHHHHHHHHHHhh
Confidence 99999999999999987654
|
| >2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.9e-32 Score=185.65 Aligned_cols=163 Identities=27% Similarity=0.385 Sum_probs=123.3
Q ss_pred cccceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCcccee--EEEEEeCC--EEEEEEecCCchhhHHhHHHHhcCCCE
Q 030429 8 FFKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFN--MRKVTKGN--VTIKLWDLGGQRRFRTMWERYCRGVSA 83 (177)
Q Consensus 8 ~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~--~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ 83 (177)
..++.+||+++|++|||||||++++.++.+...+.+|.+.. ...+..++ +.+.+||+||++++...+..+++.+|+
T Consensus 25 ~~~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ 104 (201)
T 2hup_A 25 QYDFLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQERFRTITQSYYRSANG 104 (201)
T ss_dssp -CCEEEEEEEEECTTSSHHHHHHHHHHSCC----------CEEEEEEEETTEEEEEEEECCTTCGGGHHHHHHHHTTCSE
T ss_pred ccccceEEEEECcCCCCHHHHHHHHhhCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHHhhCCE
Confidence 34567999999999999999999999888877777776643 34455554 789999999999999999999999999
Q ss_pred EEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccc--CHHHHHHHhCcccccCCce-eEEEeeecCCC
Q 030429 84 ILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEAL--SKQALVDQLGLESITDREV-CCYMISCKDSI 160 (177)
Q Consensus 84 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~ 160 (177)
+++|+|++++.+++.+..|+..+.... ..+.|+++|+||+|+.+.. ..++..+.... .++ +++++||++|.
T Consensus 105 iilv~D~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~-----~~~~~~~~~SA~~g~ 178 (201)
T 2hup_A 105 AILAYDITKRSSFLSVPHWIEDVRKYA-GSNIVQLLIGNKSDLSELREVSLAEAQSLAEH-----YDILCAIETSAKDSS 178 (201)
T ss_dssp EEEEEETTBHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECTTCGGGCCSCHHHHHHHHHH-----TTCSEEEECBTTTTB
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECCccccccccCHHHHHHHHHH-----cCCCEEEEEeCCCCC
Confidence 999999999999999888888876543 2578999999999997632 22333222211 123 79999999999
Q ss_pred ChHHHHHHHHHHhhhc
Q 030429 161 NIDAVIDWLIKHSKTA 176 (177)
Q Consensus 161 ~i~~l~~~l~~~~~~~ 176 (177)
|++++|++|.+.+.++
T Consensus 179 gi~~l~~~l~~~i~~~ 194 (201)
T 2hup_A 179 NVEEAFLRVATELIMR 194 (201)
T ss_dssp SHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHh
Confidence 9999999999987653
|
| >3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=9.7e-32 Score=183.63 Aligned_cols=162 Identities=22% Similarity=0.380 Sum_probs=131.1
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEE---EEEeC-----------CEEEEEEecCCchhhHHhH
Q 030429 9 FKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMR---KVTKG-----------NVTIKLWDLGGQRRFRTMW 74 (177)
Q Consensus 9 ~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~---~~~~~-----------~~~~~~~D~~g~~~~~~~~ 74 (177)
.+..+||+++|++|||||||++++.++.+.....++.+.... .+..+ .+.+.+||+||++.+...+
T Consensus 8 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~ 87 (195)
T 3bc1_A 8 YDYLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGLERFRSLT 87 (195)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEECTTSCCCSSCCCEEEEEEEEEECCSGGGHHHH
T ss_pred cceeEEEEEECCCCCCHHHHHHHHhcCCCCcCcccccceeeeeEEEEEecCCcccccccCcEEEEEEEeCCCcHHHHHHH
Confidence 456799999999999999999999998888777788776654 33333 4789999999999999999
Q ss_pred HHHhcCCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccC--HHHHHHHhCcccccCCceeEE
Q 030429 75 ERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALS--KQALVDQLGLESITDREVCCY 152 (177)
Q Consensus 75 ~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 152 (177)
..+++.+|++++|+|++++.++.....|+..+.......+.|+++|+||+|+.+... .++..+.... .+++++
T Consensus 88 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~-----~~~~~~ 162 (195)
T 3bc1_A 88 TAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPDIVLCGNKSDLEDQRAVKEEEARELAEK-----YGIPYF 162 (195)
T ss_dssp HHTTTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSSSSSCCEEEEEECTTCGGGCCSCHHHHHHHHHH-----HTCCEE
T ss_pred HHHHcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHH-----cCCCEE
Confidence 999999999999999999999999888888887655446799999999999976322 2222222111 123799
Q ss_pred EeeecCCCChHHHHHHHHHHhhh
Q 030429 153 MISCKDSINIDAVIDWLIKHSKT 175 (177)
Q Consensus 153 ~~Sa~~~~~i~~l~~~l~~~~~~ 175 (177)
++||++|.|+++++++|.+.+.+
T Consensus 163 ~~Sa~~~~~v~~l~~~l~~~~~~ 185 (195)
T 3bc1_A 163 ETSAANGTNISHAIEMLLDLIMK 185 (195)
T ss_dssp ECCTTTCTTHHHHHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHHHHHH
Confidence 99999999999999999988764
|
| >4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-32 Score=187.04 Aligned_cols=162 Identities=18% Similarity=0.288 Sum_probs=126.1
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEE-EEEeCC--EEEEEEecCCchhhHHhHHHHhcCCCEEEE
Q 030429 10 KQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMR-KVTKGN--VTIKLWDLGGQRRFRTMWERYCRGVSAILY 86 (177)
Q Consensus 10 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~ 86 (177)
++.+||+++|++|||||||++++.++.+...+.++...... .+..++ +.+.+||+||++.+...+..++..+|++++
T Consensus 2 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~ 81 (189)
T 4dsu_A 2 STEYKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLC 81 (189)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHHSSCCCCCCTTCCEEEEEEEEETTEEEEEEEEECCCC---CTTHHHHHHHCSEEEE
T ss_pred CcEEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCchheEEEEEEECCcEEEEEEEECCCcHHHHHHHHHHHhcCCEEEE
Confidence 56799999999999999999999988877776666653333 233443 568889999999999999999999999999
Q ss_pred EEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccCHHHHHHHhCcccccCCceeEEEeeecCCCChHHHH
Q 030429 87 VVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCKDSINIDAVI 166 (177)
Q Consensus 87 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~ 166 (177)
|+|++++.++.....|+..+.......+.|+++|+||+|+.+.....+..+.+... .+++++++||++|.|++++|
T Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~----~~~~~~~~Sa~~g~gi~~l~ 157 (189)
T 4dsu_A 82 VFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLPSRTVDTKQAQDLARS----YGIPFIETSAKTRQGVDDAF 157 (189)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTSSSCSSCHHHHHHHHHH----HTCCEEECCTTTCTTHHHHH
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccCcccccCHHHHHHHHHH----cCCeEEEEeCCCCCCHHHHH
Confidence 99999999999999998888776555689999999999997543222222222111 12379999999999999999
Q ss_pred HHHHHHhhh
Q 030429 167 DWLIKHSKT 175 (177)
Q Consensus 167 ~~l~~~~~~ 175 (177)
++|.+.+.+
T Consensus 158 ~~l~~~~~~ 166 (189)
T 4dsu_A 158 YTLVREIRK 166 (189)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999998764
|
| >3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-32 Score=185.17 Aligned_cols=163 Identities=18% Similarity=0.247 Sum_probs=129.3
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEE-EEeCC--EEEEEEecCCchhhHHhHHHHhcCCCEEE
Q 030429 9 FKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRK-VTKGN--VTIKLWDLGGQRRFRTMWERYCRGVSAIL 85 (177)
Q Consensus 9 ~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~-~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~~i 85 (177)
..+.+||+++|++|||||||++++.++.+...+.++.+..... +..++ +.+.+||+||++.+...+..+++.+|+++
T Consensus 3 ~~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~i 82 (181)
T 3t5g_A 3 QSKSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDINGYI 82 (181)
T ss_dssp CEEEEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCCTTCCCCGGGTTTCSEEE
T ss_pred CCceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCCccccEEEEEEECCEEEEEEEEeCCCchhhhHHHHHHHhcCCEEE
Confidence 4568999999999999999999999888887777777755432 34444 78899999999999888888999999999
Q ss_pred EEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccC--HHHHHHHhCcccccCCceeEEEeeecCCCChH
Q 030429 86 YVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALS--KQALVDQLGLESITDREVCCYMISCKDSINID 163 (177)
Q Consensus 86 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 163 (177)
+|+|++++++++.+..|+..+.......+.|+++|+||+|+.+... .++..+.... .+++++++||++|.|++
T Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~-----~~~~~~~~Sa~~~~~v~ 157 (181)
T 3t5g_A 83 LVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHMERVISYEEGKALAES-----WNAAFLESSAKENQTAV 157 (181)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHC----CCEEEEEECTTCTTTCCSCHHHHHHHHHH-----TTCEEEECCTTSHHHHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcceecHHHHHHHHHH-----hCCcEEEEecCCCCCHH
Confidence 9999999999999999998887766556799999999999865322 2222222211 13379999999999999
Q ss_pred HHHHHHHHHhhhc
Q 030429 164 AVIDWLIKHSKTA 176 (177)
Q Consensus 164 ~l~~~l~~~~~~~ 176 (177)
++|++|.+.+.+.
T Consensus 158 ~l~~~l~~~~~~~ 170 (181)
T 3t5g_A 158 DVFRRIILEAEKM 170 (181)
T ss_dssp HHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHh
Confidence 9999999988754
|
| >1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.2e-32 Score=181.27 Aligned_cols=160 Identities=22% Similarity=0.306 Sum_probs=126.2
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEE-EEeC--CEEEEEEecCCchhhHHhHHHHhcCCCEEEEE
Q 030429 11 QEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRK-VTKG--NVTIKLWDLGGQRRFRTMWERYCRGVSAILYV 87 (177)
Q Consensus 11 ~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~-~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v 87 (177)
+.+||+++|++|||||||++++.++.+...+.++.+..... +..+ .+.+.+||+||+.++...+..++..+|++++|
T Consensus 3 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v 82 (168)
T 1u8z_A 3 ALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCV 82 (168)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC---CHHHHHHHHHHCSEEEEE
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCccCCCCCCCcceEEEEEEEECCEEEEEEEEECCCcchhHHHHHHHhhcCCEEEEE
Confidence 46899999999999999999999888877776766644432 3333 36899999999999999999999999999999
Q ss_pred EeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccC--HHHHHHHhCcccccCCceeEEEeeecCCCChHHH
Q 030429 88 VDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALS--KQALVDQLGLESITDREVCCYMISCKDSINIDAV 165 (177)
Q Consensus 88 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l 165 (177)
+|++++.+++....|+..+.......+.|+++|+||+|+.+... .++..+.... .+++++++||++|.|++++
T Consensus 83 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~-----~~~~~~~~Sa~~~~gi~~l 157 (168)
T 1u8z_A 83 FSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRADQ-----WNVNYVETSAKTRANVDKV 157 (168)
T ss_dssp EETTCHHHHHHHHHHHHHHHHHHCCTTSCEEEEEECGGGGGGCCSCHHHHHHHHHH-----HTCEEEECCTTTCTTHHHH
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccccccCccCHHHHHHHHHH-----cCCeEEEeCCCCCCCHHHH
Confidence 99999999999988888887655545799999999999976422 2333322211 1237999999999999999
Q ss_pred HHHHHHHhhh
Q 030429 166 IDWLIKHSKT 175 (177)
Q Consensus 166 ~~~l~~~~~~ 175 (177)
|++|.+.+.+
T Consensus 158 ~~~l~~~i~~ 167 (168)
T 1u8z_A 158 FFDLMREIRA 167 (168)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHHh
Confidence 9999998865
|
| >1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-31 Score=179.78 Aligned_cols=160 Identities=26% Similarity=0.370 Sum_probs=128.2
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEE--EEEe--CCEEEEEEecCCchhhHHhHHHHhcCCCEEE
Q 030429 10 KQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMR--KVTK--GNVTIKLWDLGGQRRFRTMWERYCRGVSAIL 85 (177)
Q Consensus 10 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~--~~~~--~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i 85 (177)
.+.+||+++|++|||||||++++.++.+.....++.+.... .+.. ..+.+.+||+||++++...+..++..+|+++
T Consensus 4 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i 83 (170)
T 1r2q_A 4 ICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAI 83 (170)
T ss_dssp EEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEE
T ss_pred CceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHhhhhhHHhccCCCEEE
Confidence 46799999999999999999999988887777777665443 3333 3578999999999999999999999999999
Q ss_pred EEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccC--HHHHHHHhCcccccCCceeEEEeeecCCCChH
Q 030429 86 YVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALS--KQALVDQLGLESITDREVCCYMISCKDSINID 163 (177)
Q Consensus 86 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 163 (177)
+|+|++++.+++....|+..+..... +..|+++|+||+|+.+... .++..+... ...++++++||++|.|++
T Consensus 84 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~g~gi~ 157 (170)
T 1r2q_A 84 VVYDITNEESFARAKNWVKELQRQAS-PNIVIALSGNKADLANKRAVDFQEAQSYAD-----DNSLLFMETSAKTSMNVN 157 (170)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHSC-TTCEEEEEEECGGGGGGCCSCHHHHHHHHH-----HTTCEEEECCTTTCTTHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcC-CCCcEEEEEECccCccccccCHHHHHHHHH-----HcCCeEEEEeCCCCCCHH
Confidence 99999999999999888888765432 5789999999999865322 223222211 123479999999999999
Q ss_pred HHHHHHHHHhhh
Q 030429 164 AVIDWLIKHSKT 175 (177)
Q Consensus 164 ~l~~~l~~~~~~ 175 (177)
+++++|.+.+.+
T Consensus 158 ~l~~~i~~~~~~ 169 (170)
T 1r2q_A 158 EIFMAIAKKLPK 169 (170)
T ss_dssp HHHHHHHHTSCC
T ss_pred HHHHHHHHHHhh
Confidence 999999987754
|
| >1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-32 Score=182.22 Aligned_cols=160 Identities=19% Similarity=0.290 Sum_probs=127.3
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEE-EE--eCCEEEEEEecCCchhhHHhHHHHhcCCCEEEEE
Q 030429 11 QEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRK-VT--KGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYV 87 (177)
Q Consensus 11 ~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~-~~--~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v 87 (177)
+.+||+++|++|||||||++++.++.+...+.++.+..... +. ...+.+.+||+||+.++...+..++..+|++++|
T Consensus 2 ~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v 81 (167)
T 1c1y_A 2 REYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALV 81 (167)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHCCCCCSCCCCSEEEEEEEEESSSCEEEEEEEEECSSCSSTTHHHHHHHHCSEEEEE
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccceEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEEE
Confidence 46899999999999999999999988877777776644432 22 3457899999999999999889999999999999
Q ss_pred EeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccC--HHHHHHHhCcccccCCceeEEEeeecCCCChHHH
Q 030429 88 VDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALS--KQALVDQLGLESITDREVCCYMISCKDSINIDAV 165 (177)
Q Consensus 88 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l 165 (177)
+|++++.+++....|+..+.......+.|+++|+||+|+.+... .++..+.... ....+++++||++|.|++++
T Consensus 82 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~----~~~~~~~~~Sa~~~~gi~~l 157 (167)
T 1c1y_A 82 YSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQ----WCNCAFLESSAKSKINVNEI 157 (167)
T ss_dssp EETTCHHHHHTHHHHHHHHHHHHCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHH----TTSCEEEECBTTTTBSHHHH
T ss_pred EECCCHHHHHHHHHHHHHHHHhhCcCCCcEEEEEECccccccccCCHHHHHHHHHH----ccCCcEEEecCCCCCCHHHH
Confidence 99999998998888887776644446799999999999976432 2222222111 12457999999999999999
Q ss_pred HHHHHHHhh
Q 030429 166 IDWLIKHSK 174 (177)
Q Consensus 166 ~~~l~~~~~ 174 (177)
+++|.+.+.
T Consensus 158 ~~~l~~~i~ 166 (167)
T 1c1y_A 158 FYDLVRQIN 166 (167)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHh
Confidence 999998774
|
| >3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-32 Score=184.80 Aligned_cols=163 Identities=20% Similarity=0.251 Sum_probs=129.6
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEE-EEeCC--EEEEEEecCCchhhHHhHHHHhcCCCEEE
Q 030429 9 FKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRK-VTKGN--VTIKLWDLGGQRRFRTMWERYCRGVSAIL 85 (177)
Q Consensus 9 ~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~-~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~~i 85 (177)
..+.+||+++|++|||||||++++.++.+...+.++.+..... ...++ +.+.+||+||++.+...+..+++.+|+++
T Consensus 15 ~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i 94 (183)
T 3kkq_A 15 NLPTYKLVVVGDGGVGKSALTIQFFQKIFVDDYDPTIEDSYLKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTGDGFL 94 (183)
T ss_dssp CCCEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCSCGGGCSSHHHHHHHCSEEE
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccceeEEEEEeCCcEEEEEEEECCCchhhHHHHHHHHhcCCEEE
Confidence 4567999999999999999999999888887777777644432 33343 56778999999999999999999999999
Q ss_pred EEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccc--CHHHHHHHhCcccccCCceeEEEeeec-CCCCh
Q 030429 86 YVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEAL--SKQALVDQLGLESITDREVCCYMISCK-DSINI 162 (177)
Q Consensus 86 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~-~~~~i 162 (177)
+|+|++++.+++.+..|+..+.......+.|+++|+||+|+.+.. ..++..+..... +++++++||+ ++.|+
T Consensus 95 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~~-----~~~~~~~Sa~~~~~~v 169 (183)
T 3kkq_A 95 IVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEMATKY-----NIPYIETSAKDPPLNV 169 (183)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHHTSSCCCEEEEEECTTCSTTCCSCHHHHHHHHHHH-----TCCEEEEBCSSSCBSH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCCchhccCcCHHHHHHHHHHh-----CCeEEEeccCCCCCCH
Confidence 999999999999999998888665444678999999999987532 222222221111 2479999999 99999
Q ss_pred HHHHHHHHHHhhhc
Q 030429 163 DAVIDWLIKHSKTA 176 (177)
Q Consensus 163 ~~l~~~l~~~~~~~ 176 (177)
+++|++|.+.+.++
T Consensus 170 ~~l~~~l~~~i~~q 183 (183)
T 3kkq_A 170 DKTFHDLVRVIRQQ 183 (183)
T ss_dssp HHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhhC
Confidence 99999999988753
|
| >1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=100.00 E-value=5.9e-32 Score=184.96 Aligned_cols=164 Identities=22% Similarity=0.368 Sum_probs=131.4
Q ss_pred cccceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEE--EEEe--CCEEEEEEecCCchhhHHhHHHHhcCCCE
Q 030429 8 FFKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMR--KVTK--GNVTIKLWDLGGQRRFRTMWERYCRGVSA 83 (177)
Q Consensus 8 ~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~--~~~~--~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ 83 (177)
...+.++|+++|++|||||||++++.+..+.....++.+.... .+.. ..+.+.+|||||++.+...+..+++.+|+
T Consensus 11 ~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ 90 (195)
T 1x3s_A 11 DVLTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRGAQG 90 (195)
T ss_dssp TEEEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCCSHHHHHTTCCE
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHHcCCCCccCCCccceEEEEEEEEECCeEEEEEEEeCCCchhhhhhhHHHhccCCE
Confidence 3456799999999999999999999998888777777665443 3333 34789999999999999999999999999
Q ss_pred EEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccC-HHHHHHHhCcccccCCceeEEEeeecCCCCh
Q 030429 84 ILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALS-KQALVDQLGLESITDREVCCYMISCKDSINI 162 (177)
Q Consensus 84 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i 162 (177)
+++|+|++++.++..+..|+..+.........|+++|+||+|+.+... .++..+.... ..++++++||+++.|+
T Consensus 91 ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~Sa~~~~gi 165 (195)
T 1x3s_A 91 VILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKENREVDRNEGLKFARK-----HSMLFIEASAKTCDGV 165 (195)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHTTCCSCSCCEEEEEEECTTSSSCCSCHHHHHHHHHH-----TTCEEEECCTTTCTTH
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCcEEEEEECCcCcccccCHHHHHHHHHH-----cCCEEEEecCCCCCCH
Confidence 999999999999999998888887665556789999999999965322 2222222211 2347999999999999
Q ss_pred HHHHHHHHHHhhhc
Q 030429 163 DAVIDWLIKHSKTA 176 (177)
Q Consensus 163 ~~l~~~l~~~~~~~ 176 (177)
+++|++|.+.+.+.
T Consensus 166 ~~l~~~l~~~~~~~ 179 (195)
T 1x3s_A 166 QCAFEELVEKIIQT 179 (195)
T ss_dssp HHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHhh
Confidence 99999999987653
|
| >1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-31 Score=180.29 Aligned_cols=164 Identities=24% Similarity=0.402 Sum_probs=126.5
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEE--EEEeCC--EEEEEEecCCchhhHHhHHHHhcCCCEE
Q 030429 9 FKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMR--KVTKGN--VTIKLWDLGGQRRFRTMWERYCRGVSAI 84 (177)
Q Consensus 9 ~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~--~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~~ 84 (177)
....++|+++|++|||||||++++.++.+.....++.+.... .+..++ +.+.+||+||++.+...+..+++.+|++
T Consensus 4 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ 83 (177)
T 1wms_A 4 KSSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDCC 83 (177)
T ss_dssp CEEEEEEEEECCTTSSHHHHHHHHHHSCCCC----CCSEEEEEEEEEETTEEEEEEEEECCCCGGGHHHHGGGGTTCSEE
T ss_pred ccceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEeCCCchhhhhhHHHHHhcCCEE
Confidence 346799999999999999999999988887777777775543 344444 6899999999999999999999999999
Q ss_pred EEEEeCCCCCCHHHHHHHHHHHHcCC---CCCCCcEEEEeeCCCccccc-CHHHHHHHhCcccccCCceeEEEeeecCCC
Q 030429 85 LYVVDAADRDSVPIARSELHELLMKP---SLSGIPLLVLGNKIDKSEAL-SKQALVDQLGLESITDREVCCYMISCKDSI 160 (177)
Q Consensus 85 i~v~d~~~~~~~~~~~~~~~~~~~~~---~~~~~~~iiv~nK~D~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 160 (177)
++|+|++++.++.....|+..+.... ...+.|+++|+||+|+.+.. ..++..+... .....+++++||++|.
T Consensus 84 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~----~~~~~~~~~~Sa~~~~ 159 (177)
T 1wms_A 84 LLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDISERQVSTEEAQAWCR----DNGDYPYFETSAKDAT 159 (177)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCSSCSSCHHHHHHHHH----HTTCCCEEECCTTTCT
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHHccccccCCCcEEEEEECCcccccccCHHHHHHHHH----hcCCceEEEEeCCCCC
Confidence 99999999988888888877765432 22568999999999997432 2233322221 0234579999999999
Q ss_pred ChHHHHHHHHHHhhhc
Q 030429 161 NIDAVIDWLIKHSKTA 176 (177)
Q Consensus 161 ~i~~l~~~l~~~~~~~ 176 (177)
|++++|++|.+.+.+.
T Consensus 160 gi~~l~~~l~~~~~~~ 175 (177)
T 1wms_A 160 NVAAAFEEAVRRVLAT 175 (177)
T ss_dssp THHHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHHhh
Confidence 9999999999988654
|
| >2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-31 Score=181.67 Aligned_cols=162 Identities=23% Similarity=0.351 Sum_probs=129.2
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEE--EE--eCCEEEEEEecCCchhhHHhHHHHhcCCCEE
Q 030429 9 FKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRK--VT--KGNVTIKLWDLGGQRRFRTMWERYCRGVSAI 84 (177)
Q Consensus 9 ~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~--~~--~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~ 84 (177)
..+.+||+++|++|||||||+++++++.+.....++.+..... +. ...+.+.+||+||++++...+..++..+|++
T Consensus 20 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~i 99 (192)
T 2fg5_A 20 AIRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQERFHSLAPMYYRGSAAA 99 (192)
T ss_dssp -CEEEEEEEEECTTSSHHHHHHHHHHCCCCTTCCCCSSEEEEEEEEECSSSEEEEEEEEECCSGGGGGGTHHHHTTCSEE
T ss_pred cCCceEEEEECcCCCCHHHHHHHHhcCCCCCCcCCCcceeEEEEEEEeCCEEEEEEEEcCCCchhhHhhhHHhhccCCEE
Confidence 3567999999999999999999999988877777777755443 22 3468899999999999999999999999999
Q ss_pred EEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccc--CHHHHHHHhCcccccCCceeEEEeeecCCCCh
Q 030429 85 LYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEAL--SKQALVDQLGLESITDREVCCYMISCKDSINI 162 (177)
Q Consensus 85 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i 162 (177)
++|+|++++.++.....|+..+.... ..+.|+++|+||+|+.+.. ..++..+... ..+++++++||++|.|+
T Consensus 100 ilV~d~~~~~s~~~~~~~~~~i~~~~-~~~~piiiv~NK~Dl~~~~~v~~~~~~~~~~-----~~~~~~~~~Sa~~~~gi 173 (192)
T 2fg5_A 100 VIVYDITKQDSFYTLKKWVKELKEHG-PENIVMAIAGNKCDLSDIREVPLKDAKEYAE-----SIGAIVVETSAKNAINI 173 (192)
T ss_dssp EEEEETTCTHHHHHHHHHHHHHHHHS-CTTCEEEEEEECGGGGGGCCSCHHHHHHHHH-----TTTCEEEECBTTTTBSH
T ss_pred EEEEeCCCHHHHHHHHHHHHHHHHhC-CCCCcEEEEEECcccccccccCHHHHHHHHH-----HcCCEEEEEeCCCCcCH
Confidence 99999999999999988888775543 3478999999999997532 2333333221 12357999999999999
Q ss_pred HHHHHHHHHHhhhc
Q 030429 163 DAVIDWLIKHSKTA 176 (177)
Q Consensus 163 ~~l~~~l~~~~~~~ 176 (177)
++++++|.+.+.+.
T Consensus 174 ~~l~~~l~~~i~~~ 187 (192)
T 2fg5_A 174 EELFQGISRQIPPL 187 (192)
T ss_dssp HHHHHHHHHTCC--
T ss_pred HHHHHHHHHHHHhh
Confidence 99999999987643
|
| >3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-31 Score=182.03 Aligned_cols=159 Identities=27% Similarity=0.448 Sum_probs=129.5
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEE--EEEeCC--EEEEEEecCCchhhHHhHHHHhcCCCEE
Q 030429 9 FKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMR--KVTKGN--VTIKLWDLGGQRRFRTMWERYCRGVSAI 84 (177)
Q Consensus 9 ~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~--~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~~ 84 (177)
.+..+||+++|++|||||||++++.++.+.....++.+.... .+..++ +.+.+||+||++.+...+..+++.+|++
T Consensus 13 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ 92 (196)
T 3tkl_A 13 YDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGI 92 (196)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGCTTHHHHHTTCSEE
T ss_pred cccceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHHhhCCEE
Confidence 456799999999999999999999998888777777664443 445555 7899999999999999999999999999
Q ss_pred EEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccCH--H---HHHHHhCcccccCCceeEEEeeecCC
Q 030429 85 LYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSK--Q---ALVDQLGLESITDREVCCYMISCKDS 159 (177)
Q Consensus 85 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~--~---~~~~~~~~~~~~~~~~~~~~~Sa~~~ 159 (177)
++|+|++++.+++....|+..+..... .+.|+++|+||+|+.+.... + ++.+.+ +++++++||++|
T Consensus 93 i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~--------~~~~~~~Sa~~g 163 (196)
T 3tkl_A 93 IVVYDVTDQESFNNVKQWLQEIDRYAS-ENVNKLLVGNKCDLTTKKVVDYTTAKEFADSL--------GIPFLETSAKNA 163 (196)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHSC-TTCEEEEEEECTTCTTTCCSCHHHHHHHHHHT--------TCCEEEECTTTC
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhcC-CCCCEEEEEECcccccccccCHHHHHHHHHHc--------CCcEEEEeCCCC
Confidence 999999999999999888877755432 57899999999999754322 2 222222 237999999999
Q ss_pred CChHHHHHHHHHHhhhc
Q 030429 160 INIDAVIDWLIKHSKTA 176 (177)
Q Consensus 160 ~~i~~l~~~l~~~~~~~ 176 (177)
.|++++|++|.+.+.++
T Consensus 164 ~gv~~l~~~l~~~i~~~ 180 (196)
T 3tkl_A 164 TNVEQSFMTMAAEIKKR 180 (196)
T ss_dssp TTHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHH
Confidence 99999999999987653
|
| >2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-32 Score=188.35 Aligned_cols=161 Identities=24% Similarity=0.354 Sum_probs=128.4
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEE--EEEeCC--EEEEEEecCCchhhHHhHHHHhcCCCEE
Q 030429 9 FKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMR--KVTKGN--VTIKLWDLGGQRRFRTMWERYCRGVSAI 84 (177)
Q Consensus 9 ~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~--~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~~ 84 (177)
.++.+||+++|++|||||||+++++++.+.....+|.+.... .+..++ +.+.+|||||++++...+..+++.+|++
T Consensus 23 ~~~~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~ 102 (201)
T 2ew1_A 23 YDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSANAL 102 (201)
T ss_dssp CSEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHGGGSTTCSEE
T ss_pred cccceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHHhcCCEE
Confidence 456799999999999999999999998888777777775543 344444 6899999999999999999999999999
Q ss_pred EEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccC--HHHHHHHhCcccccCCceeEEEeeecCCCCh
Q 030429 85 LYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALS--KQALVDQLGLESITDREVCCYMISCKDSINI 162 (177)
Q Consensus 85 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i 162 (177)
++|+|++++.++..+..|+..+.... ..+.|+++|+||+|+.+... .++..+... ..+++++++||++|.|+
T Consensus 103 i~v~D~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~-----~~~~~~~~~Sa~~g~gv 176 (201)
T 2ew1_A 103 ILTYDITCEESFRCLPEWLREIEQYA-SNKVITVLVGNKIDLAERREVSQQRAEEFSE-----AQDMYYLETSAKESDNV 176 (201)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECGGGGGGCSSCHHHHHHHHH-----HHTCCEEECCTTTCTTH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECCCCccccccCHHHHHHHHH-----HcCCEEEEEeCCCCCCH
Confidence 99999999999988888888775532 25689999999999975322 222222111 11247999999999999
Q ss_pred HHHHHHHHHHhhh
Q 030429 163 DAVIDWLIKHSKT 175 (177)
Q Consensus 163 ~~l~~~l~~~~~~ 175 (177)
+++|++|.+.+.+
T Consensus 177 ~~l~~~l~~~i~~ 189 (201)
T 2ew1_A 177 EKLFLDLACRLIS 189 (201)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999987754
|
| >1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.1e-32 Score=179.71 Aligned_cols=160 Identities=16% Similarity=0.272 Sum_probs=127.1
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeE-EEEEeCC--EEEEEEecCCchhhHHhHHHHhcCCCEEEEE
Q 030429 11 QEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNM-RKVTKGN--VTIKLWDLGGQRRFRTMWERYCRGVSAILYV 87 (177)
Q Consensus 11 ~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v 87 (177)
+.+||+++|++|||||||++++.++.+...+.++.+... ..+..++ +.+.+||+||++.+...+..++..+|++++|
T Consensus 2 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~~~~i~v 81 (167)
T 1kao_A 2 REYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFILV 81 (167)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEEE
T ss_pred cEEEEEEECCCCCCHHHHHHHHHcCCCcccCCCCcceeEEEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEEEEE
Confidence 468999999999999999999998887776666655332 3334443 5699999999999999999999999999999
Q ss_pred EeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccC--HHHHHHHhCcccccCCceeEEEeeecCCCChHHH
Q 030429 88 VDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALS--KQALVDQLGLESITDREVCCYMISCKDSINIDAV 165 (177)
Q Consensus 88 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l 165 (177)
+|++++.+++....|+..+.......+.|+++|+||+|+.+... .++..+.... .+++++++||++|.|++++
T Consensus 82 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~-----~~~~~~~~Sa~~~~gi~~l 156 (167)
T 1kao_A 82 YSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESEREVSSSEGRALAEE-----WGCPFMETSAKSKTMVDEL 156 (167)
T ss_dssp EETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHH-----HTSCEEEECTTCHHHHHHH
T ss_pred EeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcccccccCCHHHHHHHHHH-----hCCCEEEecCCCCcCHHHH
Confidence 99999999999999988887765556799999999999865432 2222221111 1237999999999999999
Q ss_pred HHHHHHHhhh
Q 030429 166 IDWLIKHSKT 175 (177)
Q Consensus 166 ~~~l~~~~~~ 175 (177)
+++|.+.+.+
T Consensus 157 ~~~l~~~~~~ 166 (167)
T 1kao_A 157 FAEIVRQMNY 166 (167)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhh
Confidence 9999998765
|
| >2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A* | Back alignment and structure |
|---|
Probab=99.98 E-value=1.6e-32 Score=185.52 Aligned_cols=164 Identities=21% Similarity=0.329 Sum_probs=131.3
Q ss_pred cccceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEE-EEeCC--EEEEEEecCCchhhHHhHHHHhcCCCEE
Q 030429 8 FFKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRK-VTKGN--VTIKLWDLGGQRRFRTMWERYCRGVSAI 84 (177)
Q Consensus 8 ~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~-~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~~ 84 (177)
...+.++|+++|.+|||||||++++.++.+...+.++.+..... +..++ +.+.+||+||++++...+..++..+|++
T Consensus 5 ~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~ 84 (181)
T 2fn4_A 5 PPSETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYTKICSVDGIPARLDILDTAGQEEFGAMREQYMRAGHGF 84 (181)
T ss_dssp CSSCEEEEEEEECTTSSHHHHHHHHHHSSCCSSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTTTSCCHHHHHHHCSEE
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHHhCcCccccCCCcCceEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhhCCEE
Confidence 34567999999999999999999999988887777777755443 44443 6889999999999998889999999999
Q ss_pred EEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccC--HHHHHHHhCcccccCCceeEEEeeecCCCCh
Q 030429 85 LYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALS--KQALVDQLGLESITDREVCCYMISCKDSINI 162 (177)
Q Consensus 85 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i 162 (177)
++|+|++++.++.....|+..+.......+.|+++|+||+|+.+... .++..+ +.. ..+++++++||++|.|+
T Consensus 85 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~-~~~----~~~~~~~~~Sa~~~~gv 159 (181)
T 2fn4_A 85 LLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQRQVPRSEASA-FGA----SHHVAYFEASAKLRLNV 159 (181)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHHTSSCCCEEEEEECGGGGGGCCSCHHHHHH-HHH----HTTCEEEECBTTTTBSH
T ss_pred EEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHH-HHH----HcCCeEEEecCCCCCCH
Confidence 99999999999999999888886554446789999999999976432 222222 111 12347999999999999
Q ss_pred HHHHHHHHHHhhhc
Q 030429 163 DAVIDWLIKHSKTA 176 (177)
Q Consensus 163 ~~l~~~l~~~~~~~ 176 (177)
++++++|.+.+.+.
T Consensus 160 ~~l~~~l~~~~~~~ 173 (181)
T 2fn4_A 160 DEAFEQLVRAVRKY 173 (181)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999987653
|
| >1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A* | Back alignment and structure |
|---|
Probab=99.98 E-value=5.2e-32 Score=180.99 Aligned_cols=159 Identities=23% Similarity=0.415 Sum_probs=126.5
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEE--EEEeC--CEEEEEEecCCchhhHHhHHHHhcCCCEEE
Q 030429 10 KQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMR--KVTKG--NVTIKLWDLGGQRRFRTMWERYCRGVSAIL 85 (177)
Q Consensus 10 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~--~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i 85 (177)
++.+||+++|++|||||||++++.++.+...+.++.+.... .+..+ .+.+.+||+||+..+...+..++..+|+++
T Consensus 3 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 82 (168)
T 1z2a_A 3 EVAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQACV 82 (168)
T ss_dssp -CEEEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTCCCHHHHTTCCEEE
T ss_pred ceeEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceEEEEEEEEEEECCEEEEEEEEcCCCcHhHHHHHHHHhcCCCEEE
Confidence 46799999999999999999999998887777777664443 34433 468999999999999888889999999999
Q ss_pred EEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccC--HHHHHHHhCcccccCCceeEEEeeecCCCChH
Q 030429 86 YVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALS--KQALVDQLGLESITDREVCCYMISCKDSINID 163 (177)
Q Consensus 86 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 163 (177)
+|+|++++.+++....|+..+.... .+.|+++|+||+|+.+... .++..+.... .+.+++++||++|.|++
T Consensus 83 ~v~d~~~~~s~~~~~~~~~~i~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~-----~~~~~~~~Sa~~~~~i~ 155 (168)
T 1z2a_A 83 LVFSTTDRESFEAISSWREKVVAEV--GDIPTALVQNKIDLLDDSCIKNEEAEGLAKR-----LKLRFYRTSVKEDLNVS 155 (168)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHH--CSCCEEEEEECGGGGGGCSSCHHHHHHHHHH-----HTCEEEECBTTTTBSSH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhC--CCCCEEEEEECcccCcccccCHHHHHHHHHH-----cCCeEEEEecCCCCCHH
Confidence 9999999988888888887775543 4789999999999876322 2222222111 12379999999999999
Q ss_pred HHHHHHHHHhhh
Q 030429 164 AVIDWLIKHSKT 175 (177)
Q Consensus 164 ~l~~~l~~~~~~ 175 (177)
+++++|.+.+.+
T Consensus 156 ~l~~~l~~~~~~ 167 (168)
T 1z2a_A 156 EVFKYLAEKHLQ 167 (168)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHHhh
Confidence 999999998764
|
| >2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A* | Back alignment and structure |
|---|
Probab=99.98 E-value=8.4e-32 Score=181.74 Aligned_cols=162 Identities=21% Similarity=0.313 Sum_probs=125.1
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccc--eeEEEEEeCC---EEEEEEecCCchhhHHhHHHHhcCCCEE
Q 030429 10 KQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVG--FNMRKVTKGN---VTIKLWDLGGQRRFRTMWERYCRGVSAI 84 (177)
Q Consensus 10 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~--~~~~~~~~~~---~~~~~~D~~g~~~~~~~~~~~~~~~d~~ 84 (177)
.+.+||+++|++|||||||++++.++.+...+.+|.+ .....+..++ +.+.+||+||++.+...+..+++.+|++
T Consensus 4 ~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~ 83 (178)
T 2hxs_A 4 MRQLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQTIGGKMLDKYIYGAQGV 83 (178)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHGGGTTHHHHHTTTSSEEEEEEEETTTEEEEEEEEECTTCCTTCTTHHHHHTTCSEE
T ss_pred CceEEEEEECcCCCCHHHHHHHHHhCcCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCCccccchhhHHHhhCCEE
Confidence 4679999999999999999999998877666556665 3344455554 8999999999999999999999999999
Q ss_pred EEEEeCCCCCCHHHHHHHHHHHHcCCC-CCCCc-EEEEeeCCCcccccC--HHHHHHHhCcccccCCceeEEEeeecCCC
Q 030429 85 LYVVDAADRDSVPIARSELHELLMKPS-LSGIP-LLVLGNKIDKSEALS--KQALVDQLGLESITDREVCCYMISCKDSI 160 (177)
Q Consensus 85 i~v~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~iiv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 160 (177)
++|+|++++.+++.+..|+..+..... ....| +++|+||+|+.+... .++..+.... .+++++++||++|.
T Consensus 84 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~-----~~~~~~~~Sa~~~~ 158 (178)
T 2hxs_A 84 LLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKIDLEHMRTIKPEKHLRFCQE-----NGFSSHFVSAKTGD 158 (178)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHHHHHTCCCEEEEEEECGGGGGGCSSCHHHHHHHHHH-----HTCEEEEECTTTCT
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCeEEEEEEccccccccccCHHHHHHHHHH-----cCCcEEEEeCCCCC
Confidence 999999999889888888777654211 01344 899999999975322 2222221111 12479999999999
Q ss_pred ChHHHHHHHHHHhhhc
Q 030429 161 NIDAVIDWLIKHSKTA 176 (177)
Q Consensus 161 ~i~~l~~~l~~~~~~~ 176 (177)
|++++|++|.+.+.+.
T Consensus 159 gi~~l~~~l~~~~~~~ 174 (178)
T 2hxs_A 159 SVFLCFQKVAAEILGI 174 (178)
T ss_dssp THHHHHHHHHHHHTTC
T ss_pred CHHHHHHHHHHHHHhh
Confidence 9999999999988654
|
| >2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.98 E-value=3.3e-31 Score=181.24 Aligned_cols=164 Identities=24% Similarity=0.363 Sum_probs=129.9
Q ss_pred cccccceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEE--EEe--CCEEEEEEecCCchhhHHhHHHHhcCC
Q 030429 6 SLFFKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRK--VTK--GNVTIKLWDLGGQRRFRTMWERYCRGV 81 (177)
Q Consensus 6 ~~~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~--~~~--~~~~~~~~D~~g~~~~~~~~~~~~~~~ 81 (177)
.....+.+||+++|.+|||||||+++|.+..+.....++.+..... +.. ..+.+.+||+||+.++...+..++..+
T Consensus 19 ~~~~~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~ 98 (193)
T 2oil_A 19 SEDYNFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLERYRAITSAYYRGA 98 (193)
T ss_dssp -CCCSEEEEEEEESSTTSSHHHHHHHHHHSCCCSSCCCCSSEEEEEEEEEETTEEEEEEEEEESCCCTTCTTHHHHHTTC
T ss_pred ccccCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhccC
Confidence 3445677999999999999999999999988877777776654433 333 457899999999999999999999999
Q ss_pred CEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccC--HHHHHHHhCcccccCCceeEEEeeecCC
Q 030429 82 SAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALS--KQALVDQLGLESITDREVCCYMISCKDS 159 (177)
Q Consensus 82 d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 159 (177)
|++++|+|++++.++.....|+..+.... ..+.|+++|+||+|+.+... .++..+... ..+++++++||++|
T Consensus 99 d~vi~v~D~~~~~s~~~~~~~l~~i~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~ 172 (193)
T 2oil_A 99 VGALLVFDLTKHQTYAVVERWLKELYDHA-EATIVVMLVGNKSDLSQAREVPTEEARMFAE-----NNGLLFLETSALDS 172 (193)
T ss_dssp CEEEEEEETTCHHHHHTHHHHHHHHHTTS-CTTCEEEEEEECGGGGGGCCSCHHHHHHHHH-----HTTCEEEEECTTTC
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHhc-CCCCeEEEEEECCCcccccccCHHHHHHHHH-----HcCCEEEEEeCCCC
Confidence 99999999999988888888888876543 35789999999999976422 222222211 12347999999999
Q ss_pred CChHHHHHHHHHHhhh
Q 030429 160 INIDAVIDWLIKHSKT 175 (177)
Q Consensus 160 ~~i~~l~~~l~~~~~~ 175 (177)
.|++++|++|.+.+.+
T Consensus 173 ~gi~~l~~~l~~~i~~ 188 (193)
T 2oil_A 173 TNVELAFETVLKEIFA 188 (193)
T ss_dssp TTHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHH
Confidence 9999999999988764
|
| >3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A* | Back alignment and structure |
|---|
Probab=99.98 E-value=6.2e-33 Score=185.83 Aligned_cols=161 Identities=17% Similarity=0.169 Sum_probs=114.4
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCc--cceeEEEEEeC--CEEEEEEecCCchhhHH-hHHHHhcCCCEEEE
Q 030429 12 EMELSLIGLQNAGKTSLVNTIATGGYSEDMIPT--VGFNMRKVTKG--NVTIKLWDLGGQRRFRT-MWERYCRGVSAILY 86 (177)
Q Consensus 12 ~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t--~~~~~~~~~~~--~~~~~~~D~~g~~~~~~-~~~~~~~~~d~~i~ 86 (177)
.+||+++|++|||||||++++.+........++ .......+..+ .+.+.+||+||+.++.. ....+++.+|++++
T Consensus 2 ~~ki~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~ 81 (169)
T 3q85_A 2 VFKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQGDAGGWLQDHCLQTGDAFLI 81 (169)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCC------------CEEEEEEEETTEEEEEEEECCCCC--------CHHHHHCSEEEE
T ss_pred cEEEEEECCCCCCHHHHHHHHHhccCcccccCCCcCCeeeEEEEECCeEEEEEEEECCCccccchhhhhhhhccCCEEEE
Confidence 579999999999999999999866554443332 33333334444 47888999999988876 55566888999999
Q ss_pred EEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccC--HHHHHHHhCcccccCCceeEEEeeecCCCChHH
Q 030429 87 VVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALS--KQALVDQLGLESITDREVCCYMISCKDSINIDA 164 (177)
Q Consensus 87 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 164 (177)
|+|++++++++....|+..+.......+.|+++|+||+|+.+... .++..+... ..+++++++||++|.|+++
T Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~v~~ 156 (169)
T 3q85_A 82 VFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLAG-----TLSCKHIETSAALHHNTRE 156 (169)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCGGGCCSCHHHHHHHHH-----HTTCEEEECBTTTTBSHHH
T ss_pred EEECCChHHHHHHHHHHHHHHhcccCCCCCEEEEeeCcchhhcccCCHHHHHHHHH-----HcCCcEEEecCccCCCHHH
Confidence 999999999999999999887765555799999999999875322 222222111 1134799999999999999
Q ss_pred HHHHHHHHhhhcC
Q 030429 165 VIDWLIKHSKTAK 177 (177)
Q Consensus 165 l~~~l~~~~~~~~ 177 (177)
+|+++.+.+..+|
T Consensus 157 l~~~l~~~i~~~r 169 (169)
T 3q85_A 157 LFEGAVRQIRLRR 169 (169)
T ss_dssp HHHHHHHHHHHTC
T ss_pred HHHHHHHHHHhcC
Confidence 9999999988765
|
| >2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.98 E-value=1.5e-31 Score=184.52 Aligned_cols=163 Identities=21% Similarity=0.278 Sum_probs=130.9
Q ss_pred cccceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeE-EEEEeCC--EEEEEEecCCchhhHHhHHHHhcCCCEE
Q 030429 8 FFKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNM-RKVTKGN--VTIKLWDLGGQRRFRTMWERYCRGVSAI 84 (177)
Q Consensus 8 ~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~~ 84 (177)
...+.++|+++|++|||||||++++.++.+...+.++.+... ..+..++ +.+.+||+||+..+...+..++..+|++
T Consensus 10 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~ 89 (206)
T 2bov_A 10 NSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGF 89 (206)
T ss_dssp -CCCEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEE
T ss_pred CCCceEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEECCEEEEEEEEcCCChhhhHHHHHHHHhhCCEE
Confidence 345679999999999999999999998888777777766443 2344444 6899999999999999999999999999
Q ss_pred EEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccC--HHHHHHHhCcccccCCceeEEEeeecCCCCh
Q 030429 85 LYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALS--KQALVDQLGLESITDREVCCYMISCKDSINI 162 (177)
Q Consensus 85 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i 162 (177)
++|+|++++.++.....|+..+.......+.|+++|+||+|+.+... .++..+.... .+.+++++||++|.|+
T Consensus 90 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~-----~~~~~~~~Sa~~g~gi 164 (206)
T 2bov_A 90 LCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQ-----WNVNYVETSAKTRANV 164 (206)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHH-----HTCEEEEECTTTCTTH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccCccccccccHHHHHHHHHH-----hCCeEEEEeCCCCCCH
Confidence 99999999999999999988887765556799999999999976422 2333322211 1237999999999999
Q ss_pred HHHHHHHHHHhhh
Q 030429 163 DAVIDWLIKHSKT 175 (177)
Q Consensus 163 ~~l~~~l~~~~~~ 175 (177)
+++|++|.+.+.+
T Consensus 165 ~~l~~~l~~~i~~ 177 (206)
T 2bov_A 165 DKVFFDLMREIRA 177 (206)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999988764
|
| >2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A* | Back alignment and structure |
|---|
Probab=99.98 E-value=1e-31 Score=182.45 Aligned_cols=162 Identities=22% Similarity=0.298 Sum_probs=130.1
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEE-EEeCC--EEEEEEecCCchhhHHhHHHHhcCCCEEEE
Q 030429 10 KQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRK-VTKGN--VTIKLWDLGGQRRFRTMWERYCRGVSAILY 86 (177)
Q Consensus 10 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~-~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~ 86 (177)
...+||+++|++|||||||++++.++.+...+.++.+..... +..++ +.+.+||+||+.++...+..++..+|++++
T Consensus 16 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~ 95 (187)
T 2a9k_A 16 LALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLC 95 (187)
T ss_dssp -CEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHhhCCCCCcCCCccceEEEEEEEECCEEEEEEEEECCCCcccHHHHHHHhccCCEEEE
Confidence 457999999999999999999999888877777766654432 34443 689999999999999999999999999999
Q ss_pred EEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccc--CHHHHHHHhCcccccCCceeEEEeeecCCCChHH
Q 030429 87 VVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEAL--SKQALVDQLGLESITDREVCCYMISCKDSINIDA 164 (177)
Q Consensus 87 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 164 (177)
|+|++++.++.....|+..+.......+.|+++|+||+|+.+.. ..++..+.... .+++++++||+++.|+++
T Consensus 96 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~-----~~~~~~~~Sa~~~~gi~~ 170 (187)
T 2a9k_A 96 VFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQ-----WNVNYVETSAKTRANVDK 170 (187)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHHCCTTCCEEEEEECGGGGGGCCSCHHHHHHHHHH-----TTCEEEECCTTTCTTHHH
T ss_pred EEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccCHHHHHHHHHH-----cCCeEEEeCCCCCCCHHH
Confidence 99999999999998888888766554579999999999997632 22333332211 234799999999999999
Q ss_pred HHHHHHHHhhhc
Q 030429 165 VIDWLIKHSKTA 176 (177)
Q Consensus 165 l~~~l~~~~~~~ 176 (177)
+|++|.+.+.++
T Consensus 171 l~~~l~~~i~~~ 182 (187)
T 2a9k_A 171 VFFDLMREIRAR 182 (187)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 999999987654
|
| >3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A* | Back alignment and structure |
|---|
Probab=99.98 E-value=2.1e-32 Score=187.37 Aligned_cols=162 Identities=18% Similarity=0.216 Sum_probs=125.0
Q ss_pred cccceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEE-EEe--CCEEEEEEecCCchhhHHhHHHHhcCCCEE
Q 030429 8 FFKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRK-VTK--GNVTIKLWDLGGQRRFRTMWERYCRGVSAI 84 (177)
Q Consensus 8 ~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~-~~~--~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~ 84 (177)
..++.+||+++|.+|||||||++++.++.+...+.+|.+..... +.. ..+.+.+|||||++.+...+..+++++|++
T Consensus 19 ~~~~~~ki~~vG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ 98 (194)
T 3reg_A 19 NGKKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFSHVMKYKNEEFILHLWDTAGQEEYDRLRPLSYADSDVV 98 (194)
T ss_dssp --CEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGTTTGGGGCTTCSEE
T ss_pred ccceeeEEEEECcCCCCHHHHHHHHhcCCCCCccCCeeeeeeEEEEEECCEEEEEEEEECCCcHHHHHHhHhhccCCcEE
Confidence 34567999999999999999999999998887777877755544 233 346779999999999999999999999999
Q ss_pred EEEEeCCCCCCHHHH-HHHHHHHHcCCCCCCCcEEEEeeCCCcccc----cCHHHHHHHhCcccccCCcee-EEEeeecC
Q 030429 85 LYVVDAADRDSVPIA-RSELHELLMKPSLSGIPLLVLGNKIDKSEA----LSKQALVDQLGLESITDREVC-CYMISCKD 158 (177)
Q Consensus 85 i~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~----~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~ 158 (177)
++|+|++++.++..+ ..|+..+... ..+.|+++|+||+|+.+. ...++..+..... ++. ++++||++
T Consensus 99 i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~Sa~~ 171 (194)
T 3reg_A 99 LLCFAVNNRTSFDNISTKWEPEIKHY--IDTAKTVLVGLKVDLRKDGSDDVTKQEGDDLCQKL-----GCVAYIEASSVA 171 (194)
T ss_dssp EEEEETTCHHHHHHHHHTHHHHHHHH--CTTSEEEEEEECGGGCCTTTTCCCHHHHHHHHHHH-----TCSCEEECBTTT
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEEChhhccCCCCcccHHHHHHHHHhc-----CCCEEEEeecCC
Confidence 999999999999987 4555544332 246899999999999753 1222222221111 123 99999999
Q ss_pred CCChHHHHHHHHHHhhhc
Q 030429 159 SINIDAVIDWLIKHSKTA 176 (177)
Q Consensus 159 ~~~i~~l~~~l~~~~~~~ 176 (177)
|.|++++|++|.+.+.++
T Consensus 172 ~~gi~~l~~~l~~~i~~~ 189 (194)
T 3reg_A 172 KIGLNEVFEKSVDCIFSN 189 (194)
T ss_dssp TBSHHHHHHHHHHHHHCS
T ss_pred CCCHHHHHHHHHHHHHhc
Confidence 999999999999988654
|
| >1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B* | Back alignment and structure |
|---|
Probab=99.98 E-value=4.6e-32 Score=184.98 Aligned_cols=163 Identities=26% Similarity=0.410 Sum_probs=125.2
Q ss_pred cccceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeE--EEEEeCC--EEEEEEecCCchhhH-HhHHHHhcCCC
Q 030429 8 FFKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNM--RKVTKGN--VTIKLWDLGGQRRFR-TMWERYCRGVS 82 (177)
Q Consensus 8 ~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~--~~~~~~~--~~~~~~D~~g~~~~~-~~~~~~~~~~d 82 (177)
...+.+||+++|.+|||||||+++++++.+.....++.+... ..+..++ +.+.+||+||++++. ..+..+++.+|
T Consensus 16 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~d 95 (189)
T 1z06_A 16 SRSRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQHYYRNVH 95 (189)
T ss_dssp ---CEEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCSHHHHTTTHHHHHTTCC
T ss_pred CCCceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCchhhhhhhhHHHhcCCC
Confidence 345679999999999999999999998888777777666443 3344444 789999999999998 78888999999
Q ss_pred EEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccC--HHHHHHHhCcccccCCceeEEEeeecCC-
Q 030429 83 AILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALS--KQALVDQLGLESITDREVCCYMISCKDS- 159 (177)
Q Consensus 83 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~- 159 (177)
++++|+|++++.++..+..|+..+.......+.|+++|+||+|+.+... .++..+ +.. ..+++++++||+++
T Consensus 96 ~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~-~~~----~~~~~~~~~Sa~~~~ 170 (189)
T 1z06_A 96 AVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRSAIQVPTDLAQK-FAD----THSMPLFETSAKNPN 170 (189)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHCCCSCCCEEEEEECTTCGGGCCSCHHHHHH-HHH----HTTCCEEECCSSSGG
T ss_pred EEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceeCHHHHHH-HHH----HcCCEEEEEeCCcCC
Confidence 9999999999999999998988887765456799999999999975422 222221 111 12247999999999
Q ss_pred --CChHHHHHHHHHHhhh
Q 030429 160 --INIDAVIDWLIKHSKT 175 (177)
Q Consensus 160 --~~i~~l~~~l~~~~~~ 175 (177)
.|++++|++|.+.+.+
T Consensus 171 ~~~~i~~l~~~l~~~i~~ 188 (189)
T 1z06_A 171 DNDHVEAIFMTLAHKLKS 188 (189)
T ss_dssp GGSCHHHHHHHHC-----
T ss_pred cccCHHHHHHHHHHHHhh
Confidence 9999999999887754
|
| >2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A* | Back alignment and structure |
|---|
Probab=99.98 E-value=1.7e-31 Score=180.21 Aligned_cols=162 Identities=21% Similarity=0.328 Sum_probs=127.3
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEE--EEEeCC--EEEEEEecCCchhhHHhHHHHhcCCCEE
Q 030429 9 FKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMR--KVTKGN--VTIKLWDLGGQRRFRTMWERYCRGVSAI 84 (177)
Q Consensus 9 ~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~--~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~~ 84 (177)
+.+.+||+++|++|||||||+++++++.+.....++.+.... .+..++ +.+.+|||||++.+...+..++..+|++
T Consensus 11 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~ 90 (179)
T 2y8e_A 11 PLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVA 90 (179)
T ss_dssp -CEEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGSHHHHHTCSEE
T ss_pred CCcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEECCCcHHHHHHHHHHhcCCCEE
Confidence 346699999999999999999999988888777777764443 344444 6899999999999999999999999999
Q ss_pred EEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccC--HHHHHHHhCcccccCCceeEEEeeecCCCCh
Q 030429 85 LYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALS--KQALVDQLGLESITDREVCCYMISCKDSINI 162 (177)
Q Consensus 85 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i 162 (177)
++|+|++++.++.....|+..+.... ..+.|+++|+||+|+.+... .++..+.... .+.+++++||++|.|+
T Consensus 91 i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~-----~~~~~~~~Sa~~~~~i 164 (179)
T 2y8e_A 91 VVVYDITNTNSFHQTSKWIDDVRTER-GSDVIIMLVGNKTDLSDKRQVSTEEGERKAKE-----LNVMFIETSAKAGYNV 164 (179)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHH-TTSSEEEEEEECGGGGGGCCSCHHHHHHHHHH-----HTCEEEEEBTTTTBSH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhc-CCCCcEEEEEECCcccccCcCCHHHHHHHHHH-----cCCeEEEEeCCCCCCH
Confidence 99999999988988888888775532 24689999999999975432 2222222211 1247999999999999
Q ss_pred HHHHHHHHHHhhhc
Q 030429 163 DAVIDWLIKHSKTA 176 (177)
Q Consensus 163 ~~l~~~l~~~~~~~ 176 (177)
++++++|.+.+.+.
T Consensus 165 ~~l~~~l~~~~~~~ 178 (179)
T 2y8e_A 165 KQLFRRVAAALPGM 178 (179)
T ss_dssp HHHHHHHHHTCC--
T ss_pred HHHHHHHHHHHhhc
Confidence 99999999987654
|
| >2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A* | Back alignment and structure |
|---|
Probab=99.98 E-value=1.4e-31 Score=186.33 Aligned_cols=162 Identities=20% Similarity=0.368 Sum_probs=127.8
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEE--EEeC------------CEEEEEEecCCchhhHHhH
Q 030429 9 FKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRK--VTKG------------NVTIKLWDLGGQRRFRTMW 74 (177)
Q Consensus 9 ~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~--~~~~------------~~~~~~~D~~g~~~~~~~~ 74 (177)
.++.+||+++|++|||||||+++|+++.+...+.++.+..... +..+ .+.+.+|||||++++...+
T Consensus 22 ~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~ 101 (217)
T 2f7s_A 22 YDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERFRSLT 101 (217)
T ss_dssp CSEEEEEEEESCTTSSHHHHHHHHHCSCCCCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHHHHHHHH
T ss_pred cceeEEEEEECcCCCCHHHHHHHHhcCCCCcCCCCceeEEEEEEEEEECCccccccccCceeEEEEEEECCCcHhHHhHH
Confidence 4567999999999999999999999888776666666544332 2222 5789999999999999999
Q ss_pred HHHhcCCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccC--HHHHHHHhCcccccCCceeEE
Q 030429 75 ERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALS--KQALVDQLGLESITDREVCCY 152 (177)
Q Consensus 75 ~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 152 (177)
..++..+|++++|+|++++.++..+..|+..+.......+.|+++|+||+|+.+... .++..+.... .+++++
T Consensus 102 ~~~~~~~d~iilV~D~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~-----~~~~~~ 176 (217)
T 2f7s_A 102 TAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLPDQREVNERQARELADK-----YGIPYF 176 (217)
T ss_dssp HHHHTTCCEEEEEEETTCHHHHHHHHHHHHTCCCCCTTTCCEEEEEEECTTCGGGCCSCHHHHHHHHHH-----TTCCEE
T ss_pred HHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCCEEEEEECCccccccccCHHHHHHHHHH-----CCCcEE
Confidence 999999999999999999999999888887775554446789999999999976422 2222222111 124799
Q ss_pred EeeecCCCChHHHHHHHHHHhhh
Q 030429 153 MISCKDSINIDAVIDWLIKHSKT 175 (177)
Q Consensus 153 ~~Sa~~~~~i~~l~~~l~~~~~~ 175 (177)
++||+++.|++++|++|.+.+.+
T Consensus 177 ~~Sa~~g~gi~~l~~~l~~~i~~ 199 (217)
T 2f7s_A 177 ETSAATGQNVEKAVETLLDLIMK 199 (217)
T ss_dssp EEBTTTTBTHHHHHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHHHHHH
Confidence 99999999999999999988754
|
| >2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A* | Back alignment and structure |
|---|
Probab=99.98 E-value=6.2e-31 Score=178.70 Aligned_cols=161 Identities=22% Similarity=0.352 Sum_probs=128.6
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeE--EEEEeCC--EEEEEEecCCchhhHHhHHHHhcCCCEE
Q 030429 9 FKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNM--RKVTKGN--VTIKLWDLGGQRRFRTMWERYCRGVSAI 84 (177)
Q Consensus 9 ~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~--~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~~ 84 (177)
.++.+||+++|++|||||||++++.++.+.....++.+... ..+..++ +.+.+||+||++.+...+..++..+|++
T Consensus 7 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 86 (186)
T 2bme_A 7 YDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAGA 86 (186)
T ss_dssp CSEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTSTTCSEE
T ss_pred cccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHHhcCCEE
Confidence 46679999999999999999999998888777777766443 3344444 7899999999999999999999999999
Q ss_pred EEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccC--HHHHHHHhCcccccCCceeEEEeeecCCCCh
Q 030429 85 LYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALS--KQALVDQLGLESITDREVCCYMISCKDSINI 162 (177)
Q Consensus 85 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i 162 (177)
++|+|++++.++.....|+..+..... .+.|+++|+||+|+.+... .++..+... ...++++++||++|.|+
T Consensus 87 i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~gi 160 (186)
T 2bme_A 87 LLVYDITSRETYNALTNWLTDARMLAS-QNIVIILCGNKKDLDADREVTFLEASRFAQ-----ENELMFLETSALTGENV 160 (186)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHSC-TTCEEEEEEECGGGGGGCCSCHHHHHHHHH-----HTTCEEEECCTTTCTTH
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhcC-CCCcEEEEEECcccccccccCHHHHHHHHH-----HcCCEEEEecCCCCCCH
Confidence 999999999999988888877654322 5789999999999965322 222222211 12347999999999999
Q ss_pred HHHHHHHHHHhhh
Q 030429 163 DAVIDWLIKHSKT 175 (177)
Q Consensus 163 ~~l~~~l~~~~~~ 175 (177)
+++|++|.+.+.+
T Consensus 161 ~~l~~~l~~~~~~ 173 (186)
T 2bme_A 161 EEAFVQCARKILN 173 (186)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999987754
|
| >1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A* | Back alignment and structure |
|---|
Probab=99.98 E-value=3e-31 Score=179.02 Aligned_cols=161 Identities=20% Similarity=0.304 Sum_probs=127.6
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeE--EEEEeC--CEEEEEEecCCchhhHHhHHHHhcCCCEE
Q 030429 9 FKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNM--RKVTKG--NVTIKLWDLGGQRRFRTMWERYCRGVSAI 84 (177)
Q Consensus 9 ~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~--~~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~~ 84 (177)
.++.+||+++|.+|||||||++++.++.+.....++.+... ..+..+ .+.+.+||+||++.+...+..+++.+|++
T Consensus 12 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 91 (179)
T 1z0f_A 12 YSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGA 91 (179)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGGTCHHHHHHHHTCSEE
T ss_pred cccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCChHhhhhHHHHhccCCEE
Confidence 45679999999999999999999999888777777666443 333443 47899999999999999999999999999
Q ss_pred EEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccC--HHHHHHHhCcccccCCceeEEEeeecCCCCh
Q 030429 85 LYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALS--KQALVDQLGLESITDREVCCYMISCKDSINI 162 (177)
Q Consensus 85 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i 162 (177)
++|+|++++.++.....|+..+..... .+.|+++|+||+|+.+... .++..+.... .+++++++||++|.|+
T Consensus 92 i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~-----~~~~~~~~Sa~~~~gi 165 (179)
T 1z0f_A 92 LMVYDITRRSTYNHLSSWLTDARNLTN-PNTVIILIGNKADLEAQRDVTYEEAKQFAEE-----NGLLFLEASAKTGENV 165 (179)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHSC-TTCEEEEEEECTTCGGGCCSCHHHHHHHHHH-----TTCEEEECCTTTCTTH
T ss_pred EEEEeCcCHHHHHHHHHHHHHHHHhcC-CCCcEEEEEECcccccccccCHHHHHHHHHH-----cCCEEEEEeCCCCCCH
Confidence 999999999889888888877755432 4789999999999965322 2333222211 2347999999999999
Q ss_pred HHHHHHHHHHhhh
Q 030429 163 DAVIDWLIKHSKT 175 (177)
Q Consensus 163 ~~l~~~l~~~~~~ 175 (177)
+++|++|.+.+.+
T Consensus 166 ~~l~~~l~~~i~~ 178 (179)
T 1z0f_A 166 EDAFLEAAKKIYQ 178 (179)
T ss_dssp HHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHhh
Confidence 9999999988754
|
| >3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.98 E-value=2.2e-31 Score=180.01 Aligned_cols=161 Identities=25% Similarity=0.433 Sum_probs=126.2
Q ss_pred cccceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeE--EEEEeCC--EEEEEEecCCchhhHHhHHHHhcCCCE
Q 030429 8 FFKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNM--RKVTKGN--VTIKLWDLGGQRRFRTMWERYCRGVSA 83 (177)
Q Consensus 8 ~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~--~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ 83 (177)
.....+||+++|++|||||||++++.++.+.....++.+... ..+..++ +.+.+||+||++.+...+..++..+|+
T Consensus 5 ~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ 84 (181)
T 3tw8_B 5 DYDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFRTITSTYYRGTHG 84 (181)
T ss_dssp -CCEEEEEEEECCTTSCHHHHHHHHCSCC---CCTTTBSEEEEEEEEEETTEEEEEEEEEETTGGGCSSCCGGGGTTCSE
T ss_pred ccCcceEEEEECCCCCCHHHHHHHHhcCCCCCccCCCceeEEEEEEEEECCEEEEEEEEcCCCchhhhhhHHHHhccCCE
Confidence 345779999999999999999999998887777667666444 3455555 789999999999998888899999999
Q ss_pred EEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccC--HHHHHHHhCcccccCCceeEEEeeecCCCC
Q 030429 84 ILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALS--KQALVDQLGLESITDREVCCYMISCKDSIN 161 (177)
Q Consensus 84 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 161 (177)
+++|+|++++.++..+..|+..+.... .+.|+++|+||+|+.+... .++..+.... .+++++++||++|.|
T Consensus 85 ~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~-----~~~~~~~~Sa~~~~g 157 (181)
T 3tw8_B 85 VIVVYDVTSAESFVNVKRWLHEINQNC--DDVCRILVGNKNDDPERKVVETEDAYKFAGQ-----MGIQLFETSAKENVN 157 (181)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHC--TTSEEEEEEECTTCGGGCCSCHHHHHHHHHH-----HTCCEEECBTTTTBS
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhC--CCCCEEEEEECCCCchhcccCHHHHHHHHHH-----cCCeEEEEECCCCCC
Confidence 999999999999999988888876543 4789999999999876432 2222221111 123799999999999
Q ss_pred hHHHHHHHHHHhhh
Q 030429 162 IDAVIDWLIKHSKT 175 (177)
Q Consensus 162 i~~l~~~l~~~~~~ 175 (177)
+++++++|.+.+.+
T Consensus 158 i~~l~~~l~~~~~~ 171 (181)
T 3tw8_B 158 VEEMFNCITELVLR 171 (181)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999998764
|
| >3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.98 E-value=4.2e-31 Score=181.83 Aligned_cols=160 Identities=21% Similarity=0.356 Sum_probs=127.8
Q ss_pred cccceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEE--EEeCC-----------------------------
Q 030429 8 FFKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRK--VTKGN----------------------------- 56 (177)
Q Consensus 8 ~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~--~~~~~----------------------------- 56 (177)
..+..+||+++|++|||||||+++|++..+.....++.+..... +..++
T Consensus 3 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (208)
T 3clv_A 3 EKKSSYKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEKNNNINSINDDNNVIITNQ 82 (208)
T ss_dssp CCCSSEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSCEEEEEEEETTC-----------------------------
T ss_pred CCCcceEEEEECCCCCCHHHHHHHHHhCcCCCCcCccccceeEEEEEEecCccccccccccccccccccccccccccccc
Confidence 34678999999999999999999999988887777777644433 33332
Q ss_pred ----------EEEEEEecCCchhhHHhHHHHhcCCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCc
Q 030429 57 ----------VTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDK 126 (177)
Q Consensus 57 ----------~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~ 126 (177)
..+.+||+||++.+...+..+++.+|++++|+|++++.++.....|+..+.... ..|+++|+||+|.
T Consensus 83 ~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~---~~piilv~NK~D~ 159 (208)
T 3clv_A 83 HNNYNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLKISS---NYIIILVANKIDK 159 (208)
T ss_dssp --CCCTTTCEEEEEEEECTTGGGCTTTHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHS---CCEEEEEEECTTC
T ss_pred cccccCccceeEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhhC---CCcEEEEEECCCc
Confidence 789999999999999999999999999999999999999999888888886642 3899999999994
Q ss_pred cc-ccCHHHHHHHhCcccccCCceeEEEeeecCCCChHHHHHHHHHHhhh
Q 030429 127 SE-ALSKQALVDQLGLESITDREVCCYMISCKDSINIDAVIDWLIKHSKT 175 (177)
Q Consensus 127 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~ 175 (177)
.+ ....++..+.... .+++++++||++|.|+++++++|.+.+.+
T Consensus 160 ~~~~~~~~~~~~~~~~-----~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~ 204 (208)
T 3clv_A 160 NKFQVDILEVQKYAQD-----NNLLFIQTSAKTGTNIKNIFYMLAEEIYK 204 (208)
T ss_dssp C-CCSCHHHHHHHHHH-----TTCEEEEECTTTCTTHHHHHHHHHHHHHH
T ss_pred ccccCCHHHHHHHHHH-----cCCcEEEEecCCCCCHHHHHHHHHHHHHH
Confidence 32 2223333333221 23489999999999999999999988764
|
| >2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B* | Back alignment and structure |
|---|
Probab=99.98 E-value=3e-31 Score=179.45 Aligned_cols=162 Identities=22% Similarity=0.300 Sum_probs=127.8
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEE--EEEeC--CEEEEEEecCCchhhHHhHHHHhcCCCEE
Q 030429 9 FKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMR--KVTKG--NVTIKLWDLGGQRRFRTMWERYCRGVSAI 84 (177)
Q Consensus 9 ~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~--~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~~ 84 (177)
....+||+++|++|||||||++++.++.+.....++.+.... .+..+ .+.+.+||+||+.++...+..+++.+|++
T Consensus 9 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ 88 (181)
T 2efe_B 9 KSINAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAA 88 (181)
T ss_dssp -CEEEEEEEECCTTSCHHHHHHHHHHCCCTTTSCCCSCCSEEEEEEEETTEEEEEEEEECCCSGGGGGGTHHHHTTCSEE
T ss_pred CccceEEEEECcCCCCHHHHHHHHHcCCCCCcCCCCceeEEEEEEEEECCEEEEEEEEeCCCChhhhhhhHHHhccCCEE
Confidence 456799999999999999999999988887776666664433 33333 57899999999999999999999999999
Q ss_pred EEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccC--HHHHHHHhCcccccCCceeEEEeeecCCCCh
Q 030429 85 LYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALS--KQALVDQLGLESITDREVCCYMISCKDSINI 162 (177)
Q Consensus 85 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i 162 (177)
++|+|++++.+++....|+..+.... ..+.|+++|+||+|+.+... .++..+.... .+++++++||++|.|+
T Consensus 89 i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~-----~~~~~~~~Sa~~g~gi 162 (181)
T 2efe_B 89 IIVFDVTNQASFERAKKWVQELQAQG-NPNMVMALAGNKSDLLDARKVTAEDAQTYAQE-----NGLFFMETSAKTATNV 162 (181)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHS-CTTCEEEEEEECTTCTTTCCSCHHHHHHHHHH-----TTCEEEECCSSSCTTH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhc-CCCCcEEEEEECCcccccccCCHHHHHHHHHH-----cCCEEEEEECCCCCCH
Confidence 99999999999999998888876643 25789999999999965332 2333222211 2347999999999999
Q ss_pred HHHHHHHHHHhhhc
Q 030429 163 DAVIDWLIKHSKTA 176 (177)
Q Consensus 163 ~~l~~~l~~~~~~~ 176 (177)
++++++|.+.+.+.
T Consensus 163 ~~l~~~l~~~~~~~ 176 (181)
T 2efe_B 163 KEIFYEIARRLPRV 176 (181)
T ss_dssp HHHHHHHHHTCC--
T ss_pred HHHHHHHHHHHHhc
Confidence 99999999887653
|
| >1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A* | Back alignment and structure |
|---|
Probab=99.98 E-value=4.2e-32 Score=181.79 Aligned_cols=159 Identities=22% Similarity=0.356 Sum_probs=126.7
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEE--EEEeC--CEEEEEEecCCchhhHHhHHHHhcCCCEEE
Q 030429 10 KQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMR--KVTKG--NVTIKLWDLGGQRRFRTMWERYCRGVSAIL 85 (177)
Q Consensus 10 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~--~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i 85 (177)
.+.+||+++|++|||||||++++.++.+.....++.+.... ..... ...+.+||+||++++...+..++..+|+++
T Consensus 4 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i 83 (170)
T 1z0j_A 4 LRELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRALAPMYYRGSAAAI 83 (170)
T ss_dssp EEEEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGTHHHHTTCSEEE
T ss_pred CcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCeEEEEEEEcCCCchhhhcccHhhCcCCCEEE
Confidence 45799999999999999999999998887777777765443 33333 478999999999999998899999999999
Q ss_pred EEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccC--HHHHHHHhCcccccCCceeEEEeeecCCCChH
Q 030429 86 YVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALS--KQALVDQLGLESITDREVCCYMISCKDSINID 163 (177)
Q Consensus 86 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 163 (177)
+|+|++++.++.....|+..+... ..+..|+++|+||+|+.+... .++..+... ..+.+++++||++|.|++
T Consensus 84 ~v~d~~~~~s~~~~~~~~~~l~~~-~~~~~~iilv~nK~Dl~~~~~v~~~~~~~~~~-----~~~~~~~~~Sa~~~~~i~ 157 (170)
T 1z0j_A 84 IVYDITKEETFSTLKNWVRELRQH-GPPSIVVAIAGNKCDLTDVREVMERDAKDYAD-----SIHAIFVETSAKNAININ 157 (170)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHH-SCTTSEEEEEEECTTCGGGCCSCHHHHHHHHH-----HTTCEEEECBTTTTBSHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHh-CCCCCcEEEEEECCccccccccCHHHHHHHHH-----HcCCEEEEEeCCCCcCHH
Confidence 999999999999888888777553 235789999999999976432 222222111 123479999999999999
Q ss_pred HHHHHHHHHhh
Q 030429 164 AVIDWLIKHSK 174 (177)
Q Consensus 164 ~l~~~l~~~~~ 174 (177)
+++++|.+.+.
T Consensus 158 ~l~~~i~~~i~ 168 (170)
T 1z0j_A 158 ELFIEISRRIP 168 (170)
T ss_dssp HHHHHHHHHCC
T ss_pred HHHHHHHHHHh
Confidence 99999998765
|
| >3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.98 E-value=1.1e-31 Score=183.49 Aligned_cols=159 Identities=24% Similarity=0.438 Sum_probs=128.3
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEE--E--EeCCEEEEEEecCCchhhHHhHHHHhcCCCEE
Q 030429 9 FKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRK--V--TKGNVTIKLWDLGGQRRFRTMWERYCRGVSAI 84 (177)
Q Consensus 9 ~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~--~--~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~ 84 (177)
.+..+||+++|++|||||||+++|.++.+.....++.+..... + ....+.+.+||+||++.+...+..+++.+|++
T Consensus 20 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ 99 (191)
T 3dz8_A 20 FDYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQERYRTITTAYYRGAMGF 99 (191)
T ss_dssp EEECEEEEEEESTTSSHHHHHHHHHHHTTCCCEEEEETTTEEEEEEEETTTTEEEEEECHHHHHHCHHHHHHHHTTCCEE
T ss_pred cCeeeEEEEECCCCcCHHHHHHHHhcCCCCcccCCCeeeEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHccCCEE
Confidence 4567999999999999999999999888777766665533332 3 34578999999999999999999999999999
Q ss_pred EEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccC--HHH---HHHHhCcccccCCceeEEEeeecCC
Q 030429 85 LYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALS--KQA---LVDQLGLESITDREVCCYMISCKDS 159 (177)
Q Consensus 85 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~--~~~---~~~~~~~~~~~~~~~~~~~~Sa~~~ 159 (177)
++|+|++++.+++.+..|+..+.... ..+.|+++|+||+|+.+... .++ +.+.. +++++++||++|
T Consensus 100 i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~--------~~~~~~~Sa~~~ 170 (191)
T 3dz8_A 100 ILMYDITNEESFNAVQDWATQIKTYS-WDNAQVILVGNKCDMEEERVVPTEKGQLLAEQL--------GFDFFEASAKEN 170 (191)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHH--------TCEEEECBTTTT
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECCCCccccccCHHHHHHHHHHc--------CCeEEEEECCCC
Confidence 99999999999999888888776532 35789999999999865422 222 22222 237999999999
Q ss_pred CChHHHHHHHHHHhhhc
Q 030429 160 INIDAVIDWLIKHSKTA 176 (177)
Q Consensus 160 ~~i~~l~~~l~~~~~~~ 176 (177)
.|++++|++|.+.+.++
T Consensus 171 ~gi~~l~~~l~~~i~~~ 187 (191)
T 3dz8_A 171 ISVRQAFERLVDAICDK 187 (191)
T ss_dssp BSHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHh
Confidence 99999999999987653
|
| >2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A* | Back alignment and structure |
|---|
Probab=99.98 E-value=3.7e-31 Score=180.81 Aligned_cols=162 Identities=20% Similarity=0.277 Sum_probs=124.7
Q ss_pred cccceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCcccee--EEEEEeCC--EEEEEEecCCchhhHHhHHHHhcCCCE
Q 030429 8 FFKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFN--MRKVTKGN--VTIKLWDLGGQRRFRTMWERYCRGVSA 83 (177)
Q Consensus 8 ~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~--~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ 83 (177)
.....+||+++|++|||||||++++.++.+.....++.+.. ...+..++ +.+.+||+||++++...+..+++.+|+
T Consensus 17 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ 96 (191)
T 2a5j_A 17 RGSYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGAAG 96 (191)
T ss_dssp TTCEEEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEETTEEEEEEEECCTTGGGTSCCCHHHHTTCSE
T ss_pred ccCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCchhhhhhHHHHhccCCE
Confidence 45667999999999999999999999888877666665533 33444444 789999999999999888899999999
Q ss_pred EEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccC--HHHHHHHhCcccccCCceeEEEeeecCCCC
Q 030429 84 ILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALS--KQALVDQLGLESITDREVCCYMISCKDSIN 161 (177)
Q Consensus 84 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 161 (177)
+++|+|++++.++..+..|+..+.... ..+.|+++|+||+|+.+... .++..+... ..+++++++||++|.|
T Consensus 97 ii~v~d~~~~~s~~~~~~~l~~i~~~~-~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~-----~~~~~~~~~Sa~~~~g 170 (191)
T 2a5j_A 97 ALLVYDITRRETFNHLTSWLEDARQHS-SSNMVIMLIGNKSDLESRRDVKREEGEAFAR-----EHGLIFMETSAKTACN 170 (191)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECTTCGGGCCSCHHHHHHHHH-----HHTCEEEEECTTTCTT
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECcccCCccccCHHHHHHHHH-----HcCCEEEEEeCCCCCC
Confidence 999999999999999888888776542 25789999999999975322 222222211 1124799999999999
Q ss_pred hHHHHHHHHHHhhh
Q 030429 162 IDAVIDWLIKHSKT 175 (177)
Q Consensus 162 i~~l~~~l~~~~~~ 175 (177)
++++|++|.+.+.+
T Consensus 171 i~~l~~~l~~~i~~ 184 (191)
T 2a5j_A 171 VEEAFINTAKEIYR 184 (191)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999988754
|
| >1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A | Back alignment and structure |
|---|
Probab=99.97 E-value=8.5e-32 Score=180.28 Aligned_cols=160 Identities=24% Similarity=0.351 Sum_probs=120.9
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeE--EEEEeC--CEEEEEEecCCchhhHHhHHHHhcCCCEEEE
Q 030429 11 QEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNM--RKVTKG--NVTIKLWDLGGQRRFRTMWERYCRGVSAILY 86 (177)
Q Consensus 11 ~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~--~~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~ 86 (177)
..+||+++|++|||||||++++.++.+.....++.+... ..+..+ .+.+.+||+||++.+...+..+++.+|++++
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~ 81 (170)
T 1g16_A 2 SIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRGAMGIIL 81 (170)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHCCCCC-------CCEEEEEEESSSCEEEEEEECCTTGGGTSCCCHHHHTTEEEEEE
T ss_pred CceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCChhhhhhHHHHhccCCEEEE
Confidence 468999999999999999999998888776666666443 334443 4789999999999998888899999999999
Q ss_pred EEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccC-HHHHHHHhCcccccCCceeEEEeeecCCCChHHH
Q 030429 87 VVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALS-KQALVDQLGLESITDREVCCYMISCKDSINIDAV 165 (177)
Q Consensus 87 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l 165 (177)
|+|++++.++.....|+..+.... ..+.|+++|+||+|+.+... .++..+.... .+++++++||++|.|++++
T Consensus 82 v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~Sa~~~~gv~~l 155 (170)
T 1g16_A 82 VYDITDERTFTNIKQWFKTVNEHA-NDEAQLLLVGNKSDMETRVVTADQGEALAKE-----LGIPFIESSAKNDDNVNEI 155 (170)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECTTCTTCCSCHHHHHHHHHH-----HTCCEEECBTTTTBSHHHH
T ss_pred EEECCCHHHHHHHHHHHHHHHHhc-CCCCcEEEEEECccCCcCccCHHHHHHHHHH-----cCCeEEEEECCCCCCHHHH
Confidence 999999988888888887776543 24789999999999954322 2222211111 1237999999999999999
Q ss_pred HHHHHHHhhhc
Q 030429 166 IDWLIKHSKTA 176 (177)
Q Consensus 166 ~~~l~~~~~~~ 176 (177)
+++|.+.+.++
T Consensus 156 ~~~l~~~~~~~ 166 (170)
T 1g16_A 156 FFTLAKLIQEK 166 (170)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHHH
Confidence 99999988653
|
| >2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=3.3e-31 Score=178.30 Aligned_cols=161 Identities=19% Similarity=0.141 Sum_probs=112.9
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCcccee--EEEEEeC--CEEEEEEecCCchh--hHHhHHHHhcCCCE
Q 030429 10 KQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFN--MRKVTKG--NVTIKLWDLGGQRR--FRTMWERYCRGVSA 83 (177)
Q Consensus 10 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~--~~~~~~~--~~~~~~~D~~g~~~--~~~~~~~~~~~~d~ 83 (177)
.+.+||+++|++|||||||++++.+..+..... +.+.+ ...+..+ .+.+.+||+||+.. +......+++.+|+
T Consensus 2 ~~~~ki~i~G~~~vGKSsl~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~~ 80 (175)
T 2nzj_A 2 MALYRVVLLGDPGVGKTSLASLFAGKQERDLHE-QLGEDVYERTLTVDGEDTTLVVVDTWEAEKLDKSWSQESCLQGGSA 80 (175)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHCC-----CC-CSSSSEEEEEEEETTEEEEEEEECCC-------CHHHHHTTTSCSE
T ss_pred ceEEEEEEECCCCccHHHHHHHHhcCCCccccC-ccccceeEEEEEECCEEEEEEEEecCCCCccchhhhHHhhcccCCE
Confidence 357899999999999999999999776644332 23322 3334444 36889999999887 55666778889999
Q ss_pred EEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccC--HHHHHHHhCcccccCCceeEEEeeecCCCC
Q 030429 84 ILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALS--KQALVDQLGLESITDREVCCYMISCKDSIN 161 (177)
Q Consensus 84 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 161 (177)
+++|+|++++.+++....|+..+.......+.|+++|+||+|+.+... .++..+... ..+++++++||++|.|
T Consensus 81 ~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~-----~~~~~~~~~Sa~~g~g 155 (175)
T 2nzj_A 81 YVIVYSIADRGSFESASELRIQLRRTHQADHVPIILVGNKADLARCREVSVEEGRACAV-----VFDCKFIETSATLQHN 155 (175)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHCC----CCEEEEEECTTCTTTCCSCHHHHHHHHH-----HHTSEEEECBTTTTBS
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhhccCCCCEEEEEEChhhccccccCHHHHHHHHH-----HcCCeEEEEecCCCCC
Confidence 999999999999999998888887654445799999999999976432 222211111 1124799999999999
Q ss_pred hHHHHHHHHHHhhhc
Q 030429 162 IDAVIDWLIKHSKTA 176 (177)
Q Consensus 162 i~~l~~~l~~~~~~~ 176 (177)
++++|++|.+.+.++
T Consensus 156 i~~l~~~l~~~~~~~ 170 (175)
T 2nzj_A 156 VAELFEGVVRQLRLR 170 (175)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999999987643
|
| >1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.97 E-value=1e-30 Score=180.07 Aligned_cols=158 Identities=23% Similarity=0.448 Sum_probs=127.7
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEE--EEEeC--CEEEEEEecCCchhhHHhHHHHhcCCCEE
Q 030429 9 FKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMR--KVTKG--NVTIKLWDLGGQRRFRTMWERYCRGVSAI 84 (177)
Q Consensus 9 ~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~--~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~~ 84 (177)
....+||+++|++|||||||+++++++.+.....++.+.... .+..+ .+.+.+||+||++++...+..+++.+|++
T Consensus 5 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~i 84 (203)
T 1zbd_A 5 FDYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLERYRTITTAYYRGAMGF 84 (203)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHTCCCCSCCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTGGGCSEE
T ss_pred cceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEEECCeEEEEEEEECCCchhhcchHHHhhcCCCEE
Confidence 356799999999999999999999998887777777765443 33333 57899999999999999999999999999
Q ss_pred EEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccC--HH---HHHHHhCcccccCCceeEEEeeecCC
Q 030429 85 LYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALS--KQ---ALVDQLGLESITDREVCCYMISCKDS 159 (177)
Q Consensus 85 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~--~~---~~~~~~~~~~~~~~~~~~~~~Sa~~~ 159 (177)
++|+|++++.++.....|+..+.... ..+.|+++|+||+|+.+... .+ ++.+.+ +++++++||++|
T Consensus 85 i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~--------~~~~~~~Sa~~~ 155 (203)
T 1zbd_A 85 ILMYDITNEESFNAVQDWSTQIKTYS-WDNAQVLLVGNKCDMEDERVVSSERGRQLADHL--------GFEFFEASAKDN 155 (203)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHS-CSSCEEEEEEECTTCTTSCCSCHHHHHHHHHHH--------TCEEEECBTTTT
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECcccCcccccCHHHHHHHHHHC--------CCeEEEEECCCC
Confidence 99999999999999888888775542 34789999999999976422 22 222222 237999999999
Q ss_pred CChHHHHHHHHHHhhh
Q 030429 160 INIDAVIDWLIKHSKT 175 (177)
Q Consensus 160 ~~i~~l~~~l~~~~~~ 175 (177)
.|++++|++|.+.+.+
T Consensus 156 ~gi~~l~~~l~~~i~~ 171 (203)
T 1zbd_A 156 INVKQTFERLVDVICE 171 (203)
T ss_dssp BSSHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHH
Confidence 9999999999987754
|
| >2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.2e-31 Score=184.40 Aligned_cols=165 Identities=22% Similarity=0.350 Sum_probs=116.4
Q ss_pred ecccccceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeE--EEEEeC--CEEEEEEecCCchhhHHhHHHHhcC
Q 030429 5 ISLFFKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNM--RKVTKG--NVTIKLWDLGGQRRFRTMWERYCRG 80 (177)
Q Consensus 5 ~~~~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~--~~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~ 80 (177)
.+...++.+||+++|++|||||||+++++++.+.....++.+... ..+..+ .+.+.+||+||++++...+..++..
T Consensus 21 ~~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ 100 (199)
T 2p5s_A 21 KSFSSQKAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQERFRSIAKSYFRK 100 (199)
T ss_dssp -------CEEEEEESSTTSSHHHHHHHHHHCCCC----------CEEEEEEETTEEEEEEEEECTTCTTCHHHHHHHHHH
T ss_pred CCcCcCCCeEEEEECcCCCCHHHHHHHHHhCCCCccCCCCccceeEEEEEEECCEEEEEEEEECCCCcchhhhHHHHHhh
Confidence 345567789999999999999999999998887766666665433 334444 4789999999999999999999999
Q ss_pred CCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccc------c--CHHHHHHHhCcccccCCceeEE
Q 030429 81 VSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEA------L--SKQALVDQLGLESITDREVCCY 152 (177)
Q Consensus 81 ~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~------~--~~~~~~~~~~~~~~~~~~~~~~ 152 (177)
+|++++|+|++++.++..+..|+..+.... ..+.|+++|+||+|+.+. . ..++.. .+.. ..+++++
T Consensus 101 ~d~iilv~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~NK~Dl~~~~~~~~~~~v~~~~~~-~~~~----~~~~~~~ 174 (199)
T 2p5s_A 101 ADGVLLLYDVTCEKSFLNIREWVDMIEDAA-HETVPIMLVGNKADIRDTAATEGQKCVPGHFGE-KLAM----TYGALFC 174 (199)
T ss_dssp CSEEEEEEETTCHHHHHTHHHHHHHHHHHC----CCEEEEEECGGGHHHHHHTTCCCCCHHHHH-HHHH----HHTCEEE
T ss_pred CCEEEEEEECCChHHHHHHHHHHHHHHHhc-CCCCCEEEEEECcccccccccccccccCHHHHH-HHHH----HcCCeEE
Confidence 999999999999999998888877665432 246899999999998631 1 111111 1111 1134799
Q ss_pred EeeecCCCChHHHHHHHHHHhhh
Q 030429 153 MISCKDSINIDAVIDWLIKHSKT 175 (177)
Q Consensus 153 ~~Sa~~~~~i~~l~~~l~~~~~~ 175 (177)
++||++|.|++++|++|.+.+.+
T Consensus 175 ~~SA~~g~gv~el~~~l~~~i~~ 197 (199)
T 2p5s_A 175 ETSAKDGSNIVEAVLHLAREVKK 197 (199)
T ss_dssp ECCTTTCTTHHHHHHHHHHHHTC
T ss_pred EeeCCCCCCHHHHHHHHHHHHHh
Confidence 99999999999999999998865
|
| >2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=5.5e-32 Score=183.54 Aligned_cols=161 Identities=24% Similarity=0.392 Sum_probs=99.6
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeE--EEEEeCC--EEEEEEecCCchhhHHhHHHHhcCCCEE
Q 030429 9 FKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNM--RKVTKGN--VTIKLWDLGGQRRFRTMWERYCRGVSAI 84 (177)
Q Consensus 9 ~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~--~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~~ 84 (177)
.+..+||+++|++|||||||++++.++.+.....++.+... ..+..++ +.+.+||+||++.+...+..+++.+|++
T Consensus 5 ~~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 84 (183)
T 2fu5_C 5 YDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGI 84 (183)
T ss_dssp CSEEEEEEEECCCCC----------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC---------CCTTTTTCSEE
T ss_pred cCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcccceeEEEEEEECCEEEEEEEEcCCCChhhhhhHHHHHhcCCEE
Confidence 35679999999999999999999998877766666666443 3445555 8899999999999988888889999999
Q ss_pred EEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccC--HHHHHHHhCcccccCCceeEEEeeecCCCCh
Q 030429 85 LYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALS--KQALVDQLGLESITDREVCCYMISCKDSINI 162 (177)
Q Consensus 85 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i 162 (177)
++|+|++++.+++....|+..+.... ..+.|+++|+||+|+.+... .++..+.... .+++++++||++|.|+
T Consensus 85 i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~-----~~~~~~~~Sa~~~~~i 158 (183)
T 2fu5_C 85 MLVYDITNEKSFDNIRNWIRNIEEHA-SADVEKMILGNKCDVNDKRQVSKERGEKLALD-----YGIKFMETSAKANINV 158 (183)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHS-CTTCEEEEEEEC--CCSCCCSCHHHHHHHHHH-----HTCEEEECCC---CCH
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECccCCccCcCCHHHHHHHHHH-----cCCeEEEEeCCCCCCH
Confidence 99999999999999988888776542 24789999999999975322 2222222111 1247999999999999
Q ss_pred HHHHHHHHHHhhh
Q 030429 163 DAVIDWLIKHSKT 175 (177)
Q Consensus 163 ~~l~~~l~~~~~~ 175 (177)
+++|++|.+.+.+
T Consensus 159 ~~l~~~l~~~i~~ 171 (183)
T 2fu5_C 159 ENAFFTLARDIKA 171 (183)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999988754
|
| >2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.97 E-value=1.3e-31 Score=183.85 Aligned_cols=164 Identities=21% Similarity=0.198 Sum_probs=126.7
Q ss_pred ccccceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEE-EEeC--CEEEEEEecCCchhhHHhHHHHhcCCCE
Q 030429 7 LFFKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRK-VTKG--NVTIKLWDLGGQRRFRTMWERYCRGVSA 83 (177)
Q Consensus 7 ~~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~-~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~ 83 (177)
+...+.+||+++|.+|||||||++++.++.+...+.++.+..... +..+ .+.+.+||+||+.. ...+..++..+|+
T Consensus 23 ~~~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~-~~~~~~~~~~~d~ 101 (196)
T 2atv_A 23 MAKSAEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQATIDDEVVSMEILDTAGQED-TIQREGHMRWGEG 101 (196)
T ss_dssp ----CCEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCCC-CHHHHHHHHHCSE
T ss_pred cCCCCceEEEEECCCCCCHHHHHHHHHhCCCCcccCCCCCceEEEEEEECCEEEEEEEEECCCCCc-ccchhhhhccCCE
Confidence 345678999999999999999999999988877777777655433 3333 47899999999887 6677788899999
Q ss_pred EEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccC--HHHHHHHhCcccccCCceeEEEeeecCCC-
Q 030429 84 ILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALS--KQALVDQLGLESITDREVCCYMISCKDSI- 160 (177)
Q Consensus 84 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~- 160 (177)
+++|+|++++.+++.+..|+..+.......+.|+++|+||+|+.+... .++..+.... .+++++++||++|.
T Consensus 102 iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~-----~~~~~~~~Sa~~g~~ 176 (196)
T 2atv_A 102 FVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDHSRQVSTEEGEKLATE-----LACAFYECSACTGEG 176 (196)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHHTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHH-----HTSEEEECCTTTCTT
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhhCCCCCcEEEEEECcccccccccCHHHHHHHHHH-----hCCeEEEECCCcCCc
Confidence 999999999999999888888776644445789999999999976322 2222221111 13479999999999
Q ss_pred ChHHHHHHHHHHhhhc
Q 030429 161 NIDAVIDWLIKHSKTA 176 (177)
Q Consensus 161 ~i~~l~~~l~~~~~~~ 176 (177)
|++++|++|.+.+.++
T Consensus 177 gi~~l~~~l~~~i~~~ 192 (196)
T 2atv_A 177 NITEIFYELCREVRRR 192 (196)
T ss_dssp CHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhh
Confidence 9999999999987653
|
| >3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=2.1e-31 Score=182.42 Aligned_cols=166 Identities=19% Similarity=0.181 Sum_probs=125.5
Q ss_pred eeecccccceeEEEEEcCCCCCHHHHHHHHhcCCCCCCC-----------CCccceeEEE-----EEeCCEEEEEEecCC
Q 030429 3 LHISLFFKQEMELSLIGLQNAGKTSLVNTIATGGYSEDM-----------IPTVGFNMRK-----VTKGNVTIKLWDLGG 66 (177)
Q Consensus 3 ~~~~~~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~-----------~~t~~~~~~~-----~~~~~~~~~~~D~~g 66 (177)
.......+..+||+++|++|||||||++.+. +.+...+ .+|.+..... +....+.+++|||||
T Consensus 5 ~~~~~~~~~~~ki~vvG~~~~GKssL~~~l~-~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~Dt~G 83 (198)
T 3t1o_A 5 TINFANREINFKIVYYGPGLSGKTTNLKWIY-SKVPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKTRFHLYTVPG 83 (198)
T ss_dssp EEETTTTEEEEEEEEECSTTSSHHHHHHHHH-HTSCGGGBCCCEEEECSSCEEEEEEECCSSCCCSSSCEEEEEEEECCS
T ss_pred ccchhccccccEEEEECCCCCCHHHHHHHHH-hhccccccccccccccccccceeeeecccccccccCCceEEEEEeCCC
Confidence 3334455678999999999999999997665 4444332 2233333322 122457899999999
Q ss_pred chhhHHhHHHHhcCCCEEEEEEeCC------CCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccCHHHHHHHhC
Q 030429 67 QRRFRTMWERYCRGVSAILYVVDAA------DRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLG 140 (177)
Q Consensus 67 ~~~~~~~~~~~~~~~d~~i~v~d~~------~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~ 140 (177)
++++...+..+++.+|++++|+|++ +.+++..+..|+..+. ....+.|+++|+||+|+.+....++..+...
T Consensus 84 ~~~~~~~~~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~--~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~ 161 (198)
T 3t1o_A 84 QVFYNASRKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYG--LTLDDVPIVIQVNKRDLPDALPVEMVRAVVD 161 (198)
T ss_dssp CCSCSHHHHHHTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTT--CCTTSSCEEEEEECTTSTTCCCHHHHHHHHC
T ss_pred hHHHHHHHHHHHhcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhhc--cccCCCCEEEEEEchhcccccCHHHHHHHHH
Confidence 9999999999999999999999999 4456667777777662 2335789999999999988766666666554
Q ss_pred cccccCCce-eEEEeeecCCCChHHHHHHHHHHhhhc
Q 030429 141 LESITDREV-CCYMISCKDSINIDAVIDWLIKHSKTA 176 (177)
Q Consensus 141 ~~~~~~~~~-~~~~~Sa~~~~~i~~l~~~l~~~~~~~ 176 (177)
.. ++ +++++||++|.|++++|++|.+.+.++
T Consensus 162 ~~-----~~~~~~~~Sa~~~~gv~~l~~~l~~~i~~~ 193 (198)
T 3t1o_A 162 PE-----GKFPVLEAVATEGKGVFETLKEVSRLVLAR 193 (198)
T ss_dssp TT-----CCSCEEECBGGGTBTHHHHHHHHHHHHHHH
T ss_pred hc-----CCceEEEEecCCCcCHHHHHHHHHHHHHHH
Confidence 32 23 799999999999999999999987653
|
| >2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=3.9e-31 Score=180.90 Aligned_cols=163 Identities=22% Similarity=0.346 Sum_probs=121.8
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeE--EEEEeCC--EEEEEEecCCchhhHHhHHHHhcCCCEE
Q 030429 9 FKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNM--RKVTKGN--VTIKLWDLGGQRRFRTMWERYCRGVSAI 84 (177)
Q Consensus 9 ~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~--~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~~ 84 (177)
....+||+++|.+|||||||+++|.++.+.....++.+... ..+..++ +.+.+||+||++++...+..+++.+|++
T Consensus 23 ~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~i 102 (192)
T 2il1_A 23 ADFKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGI 102 (192)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHCC--------CCTTEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHHHHHHCSEE
T ss_pred cCCceEEEEECCCCCCHHHHHHHHhcCCCCcCCCCccceeEEEEEEEECCeEEEEEEEeCCCcHHHHHHHHHHhcCCCEE
Confidence 35679999999999999999999998887766666666443 3344444 7899999999999999999999999999
Q ss_pred EEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccC--HHHHHHHhCcccccCCceeEEEeeecCCCCh
Q 030429 85 LYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALS--KQALVDQLGLESITDREVCCYMISCKDSINI 162 (177)
Q Consensus 85 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i 162 (177)
++|+|++++.+++.+..|+..+... ...+.|+++|+||+|+.+... .++..+... . ....+++++||++|.|+
T Consensus 103 ilV~D~~~~~s~~~~~~~~~~i~~~-~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~-~---~~~~~~~~~SA~~g~gi 177 (192)
T 2il1_A 103 ILVYDITKKETFDDLPKWMKMIDKY-ASEDAELLLVGNKLDCETDREITRQQGEKFAQ-Q---ITGMRFCEASAKDNFNV 177 (192)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHH-SCTTCEEEEEEECGGGGGGCCSCHHHHHHHHH-T---STTCEEEECBTTTTBSH
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHh-cCCCCcEEEEEECcccccccccCHHHHHHHHH-h---cCCCeEEEEeCCCCCCH
Confidence 9999999998998888877666443 225789999999999976432 222222211 1 12457999999999999
Q ss_pred HHHHHHHHHHhhhc
Q 030429 163 DAVIDWLIKHSKTA 176 (177)
Q Consensus 163 ~~l~~~l~~~~~~~ 176 (177)
+++|++|.+.+.++
T Consensus 178 ~~l~~~l~~~i~~~ 191 (192)
T 2il1_A 178 DEIFLKLVDDILKK 191 (192)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999987653
|
| >3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=1.7e-31 Score=185.74 Aligned_cols=161 Identities=20% Similarity=0.222 Sum_probs=125.6
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEE---EEeCCEEEEEEecCCchhhHHhHHHHhcCCCEEE
Q 030429 9 FKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRK---VTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAIL 85 (177)
Q Consensus 9 ~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~---~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i 85 (177)
....+||+++|.+|||||||+++|.++.+...+.+|.+..... +....+.+.+|||||++++...+..++..+|+++
T Consensus 24 ~~~~~ki~vvG~~~vGKSsL~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i 103 (214)
T 3q3j_B 24 VVARCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTACLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDAVL 103 (214)
T ss_dssp ---CEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEEC--CEEEEEEEEECCSGGGTTTGGGGCTTCSEEE
T ss_pred ccceEEEEEECcCCCCHHHHHHHHhcCCCCCCcCCeeeeeEEEEEEECCEEEEEEEEECCCCHhHHHHHHHHcCCCeEEE
Confidence 4567999999999999999999999999888888887765542 2345588999999999999999999999999999
Q ss_pred EEEeCCCCCCHHH-HHHHHHHHHcCCCCCCCcEEEEeeCCCcccc--------------cCHHHHHHHhCcccccCCce-
Q 030429 86 YVVDAADRDSVPI-ARSELHELLMKPSLSGIPLLVLGNKIDKSEA--------------LSKQALVDQLGLESITDREV- 149 (177)
Q Consensus 86 ~v~d~~~~~~~~~-~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~--------------~~~~~~~~~~~~~~~~~~~~- 149 (177)
+|||++++.++.. ...|+..+.... .+.|+++|+||+|+.+. ...++..+... ..++
T Consensus 104 ~v~d~~~~~s~~~~~~~~~~~i~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~-----~~~~~ 176 (214)
T 3q3j_B 104 LCFDISRPETVDSALKKWRTEILDYC--PSTRVLLIGCKTDLRTDLSTLMELSHQKQAPISYEQGCAIAK-----QLGAE 176 (214)
T ss_dssp EEEETTCTHHHHHHHTHHHHHHHHHC--TTSEEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHH-----HHTCS
T ss_pred EEEECcCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEEChhhccchhhhhhhcccccCccCHHHHHHHHH-----HcCCC
Confidence 9999999999998 577777765542 47899999999999753 11222111111 1123
Q ss_pred eEEEeeecCCCC-hHHHHHHHHHHhhhc
Q 030429 150 CCYMISCKDSIN-IDAVIDWLIKHSKTA 176 (177)
Q Consensus 150 ~~~~~Sa~~~~~-i~~l~~~l~~~~~~~ 176 (177)
++++|||++|.| ++++|+.|.+.+.+.
T Consensus 177 ~~~e~SA~~g~g~v~~lf~~l~~~~~~~ 204 (214)
T 3q3j_B 177 IYLEGSAFTSEKSIHSIFRTASMLCLNK 204 (214)
T ss_dssp EEEECCTTTCHHHHHHHHHHHHHHHHC-
T ss_pred EEEEeccCCCcccHHHHHHHHHHHHhcc
Confidence 799999999998 999999999987653
|
| >2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.97 E-value=2.5e-31 Score=179.70 Aligned_cols=162 Identities=25% Similarity=0.419 Sum_probs=119.1
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHhcCCCC-CCCCCccceeEEE--EEeC--CEEEEEEecCCchhhHHhHHHHhcCCCE
Q 030429 9 FKQEMELSLIGLQNAGKTSLVNTIATGGYS-EDMIPTVGFNMRK--VTKG--NVTIKLWDLGGQRRFRTMWERYCRGVSA 83 (177)
Q Consensus 9 ~~~~~~i~i~G~~~~GKSsli~~l~~~~~~-~~~~~t~~~~~~~--~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~ 83 (177)
.+..+||+++|++|||||||++++.++.+. ....++.+..... +..+ .+.+.+||+||++.+...+..++..+|+
T Consensus 7 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ 86 (180)
T 2g6b_A 7 YDVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHAYYRDAHA 86 (180)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC--------CCGGGCSE
T ss_pred CCcceEEEEECcCCCCHHHHHHHHHhCCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHccCCCE
Confidence 467899999999999999999999988874 3455666655443 3344 3689999999999999888899999999
Q ss_pred EEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccC--HHHHHHHhCcccccCCceeEEEeeecCCCC
Q 030429 84 ILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALS--KQALVDQLGLESITDREVCCYMISCKDSIN 161 (177)
Q Consensus 84 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 161 (177)
+++|+|++++.++..+..|+..+..... .+.|+++|+||+|+.+... .++..+.... .+++++++||++|.|
T Consensus 87 ii~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~-----~~~~~~~~Sa~~~~g 160 (180)
T 2g6b_A 87 LLLLYDVTNKASFDNIQAWLTEIHEYAQ-HDVALMLLGNKVDSAHERVVKREDGEKLAKE-----YGLPFMETSAKTGLN 160 (180)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHSC-TTCEEEEEEECCSTTSCCCSCHHHHHHHHHH-----HTCCEEECCTTTCTT
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhCC-CCCcEEEEEECcccCcccccCHHHHHHHHHH-----cCCeEEEEeCCCCCC
Confidence 9999999999888888888877765432 5789999999999976432 2222221111 123799999999999
Q ss_pred hHHHHHHHHHHhhhc
Q 030429 162 IDAVIDWLIKHSKTA 176 (177)
Q Consensus 162 i~~l~~~l~~~~~~~ 176 (177)
+++++++|.+.+.++
T Consensus 161 i~~l~~~l~~~~~~~ 175 (180)
T 2g6b_A 161 VDLAFTAIAKELKRR 175 (180)
T ss_dssp HHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999987653
|
| >2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=3.2e-31 Score=180.82 Aligned_cols=159 Identities=26% Similarity=0.451 Sum_probs=127.8
Q ss_pred cccceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEE--EEEe--CCEEEEEEecCCchhhHHhHHHHhcCCCE
Q 030429 8 FFKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMR--KVTK--GNVTIKLWDLGGQRRFRTMWERYCRGVSA 83 (177)
Q Consensus 8 ~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~--~~~~--~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ 83 (177)
..+..+||+++|++|||||||+++++++.+.....++.+.... .+.. ..+.+.+||+||++++...+..++..+|+
T Consensus 18 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 97 (189)
T 2gf9_A 18 GSDYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERYRTITTAYYRGAMG 97 (189)
T ss_dssp TCSEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCCCEEEEEEEEETTEEEEEEEEECCSCCSSCCSGGGGGTTCSE
T ss_pred ccCceeEEEEECCCCCCHHHHHHHHHcCCCCCCcCCceeEEEEEEEEEECCeEEEEEEEeCCCcHHHhhhHHHhccCCCE
Confidence 3456799999999999999999999998887777777665443 3333 35789999999999998888889999999
Q ss_pred EEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccC--HH---HHHHHhCcccccCCceeEEEeeecC
Q 030429 84 ILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALS--KQ---ALVDQLGLESITDREVCCYMISCKD 158 (177)
Q Consensus 84 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~--~~---~~~~~~~~~~~~~~~~~~~~~Sa~~ 158 (177)
+++|+|++++.+++....|+..+.... ..+.|+++|+||+|+.+... .+ ++.+.++ ++++++||++
T Consensus 98 ii~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~--------~~~~~~Sa~~ 168 (189)
T 2gf9_A 98 FLLMYDIANQESFAAVQDWATQIKTYS-WDNAQVILVGNKCDLEDERVVPAEDGRRLADDLG--------FEFFEASAKE 168 (189)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHT--------CEEEECBTTT
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECcccccccCCCHHHHHHHHHHcC--------CeEEEEECCC
Confidence 999999999989988888887775542 34789999999999976432 22 2222222 3799999999
Q ss_pred CCChHHHHHHHHHHhhh
Q 030429 159 SINIDAVIDWLIKHSKT 175 (177)
Q Consensus 159 ~~~i~~l~~~l~~~~~~ 175 (177)
|.|+++++++|.+.+.+
T Consensus 169 g~gi~~l~~~l~~~i~~ 185 (189)
T 2gf9_A 169 NINVKQVFERLVDVICE 185 (189)
T ss_dssp TBSHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHH
Confidence 99999999999998764
|
| >2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A | Back alignment and structure |
|---|
Probab=99.97 E-value=1.8e-31 Score=180.29 Aligned_cols=157 Identities=17% Similarity=0.241 Sum_probs=116.0
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeE-EEEEeC--CEEEEEEecCCchhhHHhHHHHhcCCCEEE
Q 030429 9 FKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNM-RKVTKG--NVTIKLWDLGGQRRFRTMWERYCRGVSAIL 85 (177)
Q Consensus 9 ~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i 85 (177)
..+.+||+++|++|||||||++++.++.+.. +.+|.+... ..+..+ .+.+.+|||||+++ ..+++++|+++
T Consensus 4 ~~~~~ki~~vG~~~vGKTsli~~l~~~~~~~-~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~-----~~~~~~~d~~i 77 (178)
T 2iwr_A 4 SIPELRLGVLGDARSGKSSLIHRFLTGSYQV-LEKTESEQYKKEMLVDGQTHLVLIREEAGAPD-----AKFSGWADAVI 77 (178)
T ss_dssp CCCEEEEEEECCGGGCHHHHHHHHHHSCCCC-CSSCSSSEEEEEEEETTEEEEEEEEECSSSCC-----HHHHHHCSEEE
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHhCCCCC-cCCCcceeEEEEEEECCEEEEEEEEECCCCch-----hHHHHhCCEEE
Confidence 4567999999999999999999999888876 556655332 234444 36789999999877 34577799999
Q ss_pred EEEeCCCCCCHHHHHHHHHHHHc--CCCCCCCcEEEEeeCCCccc--c--cCHHHHHHHhCcccccCCceeEEEeeecCC
Q 030429 86 YVVDAADRDSVPIARSELHELLM--KPSLSGIPLLVLGNKIDKSE--A--LSKQALVDQLGLESITDREVCCYMISCKDS 159 (177)
Q Consensus 86 ~v~d~~~~~~~~~~~~~~~~~~~--~~~~~~~~~iiv~nK~D~~~--~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 159 (177)
+|+|++++.++..+..|+..+.. .....+.|+++|+||+|+.+ . ...++..+.... ....+++++||++|
T Consensus 78 lv~D~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~----~~~~~~~~~Sa~~~ 153 (178)
T 2iwr_A 78 FVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPRVVGDARARALXAD----MKRCSYYETXATYG 153 (178)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHHCSSSCCCEEEEEEECTTCBTTBCCCSCHHHHHHHHHH----HSSEEEEEEBTTTT
T ss_pred EEEECcCHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccccCcCCHHHHHHHHHh----hcCCeEEEEecccc
Confidence 99999999999999886443322 22235789999999999842 1 122222221111 12357999999999
Q ss_pred CChHHHHHHHHHHhhh
Q 030429 160 INIDAVIDWLIKHSKT 175 (177)
Q Consensus 160 ~~i~~l~~~l~~~~~~ 175 (177)
.|++++|++|.+.+.+
T Consensus 154 ~~i~~lf~~l~~~~~~ 169 (178)
T 2iwr_A 154 LNVDRVFQEVAQKVVT 169 (178)
T ss_dssp BTHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHH
Confidence 9999999999988754
|
| >2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.97 E-value=2.2e-31 Score=178.45 Aligned_cols=161 Identities=21% Similarity=0.295 Sum_probs=124.4
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEE-EEe--CCEEEEEEecCCchhhHHhHHHHhcCCCEEEEE
Q 030429 11 QEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRK-VTK--GNVTIKLWDLGGQRRFRTMWERYCRGVSAILYV 87 (177)
Q Consensus 11 ~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~-~~~--~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v 87 (177)
+.+||+++|++|||||||++++.++.+.....++.+..... ... ..+.+.+|||||+.++...+..++..+|++++|
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i~v 81 (172)
T 2erx_A 2 NDYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQVISCDKSICTLQITDTTGSHQFPAMQRLSISKGHAFILV 81 (172)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEEEEEEEEETTEEEEEEEEECCSCSSCHHHHHHHHHHCSEEEEE
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccccEEEEEEECCEEEEEEEEECCCchhhHHHHHHhcccCCEEEEE
Confidence 46899999999999999999999888777777776655443 222 346899999999999999899999999999999
Q ss_pred EeCCCCCCHHHHHHHHHHHHcCC-CCCCCcEEEEeeCCCcccccCH--HHHHHHhCcccccCCceeEEEeeecCCCChHH
Q 030429 88 VDAADRDSVPIARSELHELLMKP-SLSGIPLLVLGNKIDKSEALSK--QALVDQLGLESITDREVCCYMISCKDSINIDA 164 (177)
Q Consensus 88 ~d~~~~~~~~~~~~~~~~~~~~~-~~~~~~~iiv~nK~D~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 164 (177)
+|++++.+++....|+..+.... ...+.|+++|+||+|+.+.... .+..+... ..+.+++++||++|.|+++
T Consensus 82 ~d~~~~~~~~~~~~~~~~i~~~~~~~~~~pii~v~nK~Dl~~~~~v~~~~~~~~~~-----~~~~~~~~~Sa~~~~gi~~ 156 (172)
T 2erx_A 82 YSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPSREVQSSEAEALAR-----TWKCAFMETSAKLNHNVKE 156 (172)
T ss_dssp EETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGGGCCSCHHHHHHHHH-----HHTCEEEECBTTTTBSHHH
T ss_pred EECcCHHHHHHHHHHHHHHHHHhCCCCCCCEEEEEEccccccccccCHHHHHHHHH-----HhCCeEEEecCCCCcCHHH
Confidence 99999888888888877665431 2246899999999998754322 22111111 1124799999999999999
Q ss_pred HHHHHHHHhhhc
Q 030429 165 VIDWLIKHSKTA 176 (177)
Q Consensus 165 l~~~l~~~~~~~ 176 (177)
++++|.+.+.++
T Consensus 157 l~~~l~~~~~~~ 168 (172)
T 2erx_A 157 LFQELLNLEKRR 168 (172)
T ss_dssp HHHHHHHTCCSS
T ss_pred HHHHHHHHHhhh
Confidence 999999987654
|
| >1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=1.6e-31 Score=179.02 Aligned_cols=160 Identities=27% Similarity=0.326 Sum_probs=120.5
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEE--EEEe--CCEEEEEEecCCchhhHHhHHHHhcCCCEEE
Q 030429 10 KQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMR--KVTK--GNVTIKLWDLGGQRRFRTMWERYCRGVSAIL 85 (177)
Q Consensus 10 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~--~~~~--~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i 85 (177)
++.+||+++|++|||||||++++.++.+.....++.+.... .+.. ..+.+.+||+||++++...+..+++.+|+++
T Consensus 4 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i 83 (170)
T 1z08_A 4 AYSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGAI 83 (170)
T ss_dssp CEEEEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC-------CCSSTTCSEEE
T ss_pred CcceEEEEECcCCCCHHHHHHHHHcCCCCcCCCCccceEEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHhccCCEEE
Confidence 56799999999999999999999988887777777765443 3433 3478999999999999888888899999999
Q ss_pred EEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccc--CHHHHHHHhCcccccCCceeEEEeeecCCCChH
Q 030429 86 YVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEAL--SKQALVDQLGLESITDREVCCYMISCKDSINID 163 (177)
Q Consensus 86 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 163 (177)
+|+|++++.++.....|+..+.... ..+.|+++|+||+|+.+.. ..++..+.... .+.+++++||++|.|++
T Consensus 84 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~-----~~~~~~~~Sa~~~~gi~ 157 (170)
T 1z08_A 84 LVYDITDEDSFQKVKNWVKELRKML-GNEICLCIVGNKIDLEKERHVSIQEAESYAES-----VGAKHYHTSAKQNKGIE 157 (170)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHH-GGGSEEEEEEECGGGGGGCCSCHHHHHHHHHH-----TTCEEEEEBTTTTBSHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhc-CCCCeEEEEEECcccccccccCHHHHHHHHHH-----cCCeEEEecCCCCCCHH
Confidence 9999999999999888877764432 1468999999999997632 22222222111 12479999999999999
Q ss_pred HHHHHHHHHhhh
Q 030429 164 AVIDWLIKHSKT 175 (177)
Q Consensus 164 ~l~~~l~~~~~~ 175 (177)
++|++|.+.+.+
T Consensus 158 ~l~~~l~~~~~~ 169 (170)
T 1z08_A 158 ELFLDLCKRMIE 169 (170)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHHhh
Confidence 999999998764
|
| >2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ... | Back alignment and structure |
|---|
Probab=99.97 E-value=3.1e-31 Score=176.58 Aligned_cols=159 Identities=18% Similarity=0.274 Sum_probs=125.0
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEE-EEEeC--CEEEEEEecCCchhhHHhHHHHhcCCCEEEEEE
Q 030429 12 EMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMR-KVTKG--NVTIKLWDLGGQRRFRTMWERYCRGVSAILYVV 88 (177)
Q Consensus 12 ~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~ 88 (177)
.++|+++|++|||||||++++.++.+.....++.+.... .+..+ .+.+.+||+||+.++...+..++..+|++++|+
T Consensus 3 ~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~ 82 (166)
T 2ce2_X 3 EYKLVVVGAGGVGKSALTIQLIQNHFVDECDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVF 82 (166)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCSSCCHHHHHHHHHCSEEEEEE
T ss_pred eeEEEEECCCCCCHHHHHHHHHhCcCccccCCccceEEEEEEEECCEEEEEEEEECCCchhhhHHHHHhhccCCEEEEEE
Confidence 579999999999999999999988877766666654332 23333 467899999999999888888999999999999
Q ss_pred eCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccC-HHHHHHHhCcccccCCceeEEEeeecCCCChHHHHH
Q 030429 89 DAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALS-KQALVDQLGLESITDREVCCYMISCKDSINIDAVID 167 (177)
Q Consensus 89 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~ 167 (177)
|++++.++.....|+..+.......+.|+++|+||+|+.+... .++..+.... .+++++++||++|.|++++++
T Consensus 83 d~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~Sa~~~~gi~~l~~ 157 (166)
T 2ce2_X 83 AINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDLAARTVESRQAQDLARS-----YGIPYIETSAKTRQGVEDAFY 157 (166)
T ss_dssp ETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSCCCSCHHHHHHHHHH-----HTCCEEEECTTTCTTHHHHHH
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEchhhhhcccCHHHHHHHHHH-----cCCeEEEecCCCCCCHHHHHH
Confidence 9999999998888888776654445789999999999876322 2222221111 123799999999999999999
Q ss_pred HHHHHhhh
Q 030429 168 WLIKHSKT 175 (177)
Q Consensus 168 ~l~~~~~~ 175 (177)
+|.+.+.+
T Consensus 158 ~l~~~~~~ 165 (166)
T 2ce2_X 158 TLVREIRQ 165 (166)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHh
Confidence 99998865
|
| >3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=2.7e-31 Score=182.20 Aligned_cols=163 Identities=18% Similarity=0.176 Sum_probs=120.4
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCcc--ceeEEEEEeC--CEEEEEEecCCchhhHH-hHHHHhcCCCE
Q 030429 9 FKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTV--GFNMRKVTKG--NVTIKLWDLGGQRRFRT-MWERYCRGVSA 83 (177)
Q Consensus 9 ~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~--~~~~~~~~~~--~~~~~~~D~~g~~~~~~-~~~~~~~~~d~ 83 (177)
....+||+++|++|||||||+++|.+........++. ......+..+ .+.+.+|||+|++.+.. ....+++.+|+
T Consensus 20 ~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~d~ 99 (195)
T 3cbq_A 20 KDGIFKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTLVVYDIWEQGDAGGWLRDHCLQTGDA 99 (195)
T ss_dssp --CEEEEEEECSTTSSHHHHHHHTCCEECCGGGTTTSCTTEEEEEEEETTEEEEEEEECCCCCSGGGHHHHHHHHHHCSE
T ss_pred CCcEEEEEEECCCCCCHHHHHHHHHhccCCccCCCCcccceEEEEEEECCEEEEEEEEecCCCccchhhhHHHhhccCCE
Confidence 3467999999999999999999997543322222222 2333334444 46789999999987765 66778889999
Q ss_pred EEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccc--CHHHHHHHhCcccccCCceeEEEeeecCCCC
Q 030429 84 ILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEAL--SKQALVDQLGLESITDREVCCYMISCKDSIN 161 (177)
Q Consensus 84 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 161 (177)
+++|+|++++.++..+..|+..+.........|+++|+||+|+.+.. ..++..+.... .+++++++||++|.|
T Consensus 100 ~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~a~~-----~~~~~~e~Sa~~~~~ 174 (195)
T 3cbq_A 100 FLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLAGT-----LSCKHIETSAALHHN 174 (195)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCTTTCCSCHHHHHHHHHH-----TTCEEEEEBTTTTBS
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeechhccccCCcCHHHHHHHHHH-----hCCEEEEEcCCCCCC
Confidence 99999999999999999999888665443578999999999997532 22222221111 124799999999999
Q ss_pred hHHHHHHHHHHhhhc
Q 030429 162 IDAVIDWLIKHSKTA 176 (177)
Q Consensus 162 i~~l~~~l~~~~~~~ 176 (177)
++++|++|.+.+.+.
T Consensus 175 v~~lf~~l~~~i~~~ 189 (195)
T 3cbq_A 175 TRELFEGAVRQIRLR 189 (195)
T ss_dssp HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999999988654
|
| >2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C | Back alignment and structure |
|---|
Probab=99.97 E-value=1e-31 Score=185.51 Aligned_cols=161 Identities=17% Similarity=0.201 Sum_probs=94.2
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcC--CCCCCCCCccc--eeEEEEEeC----CEEEEEEecCCchhhHHhHHHHhcCC
Q 030429 10 KQEMELSLIGLQNAGKTSLVNTIATG--GYSEDMIPTVG--FNMRKVTKG----NVTIKLWDLGGQRRFRTMWERYCRGV 81 (177)
Q Consensus 10 ~~~~~i~i~G~~~~GKSsli~~l~~~--~~~~~~~~t~~--~~~~~~~~~----~~~~~~~D~~g~~~~~~~~~~~~~~~ 81 (177)
...++|+++|++|||||||++++.++ .+...+.+|.+ .....+..+ .+.+.+|||||++.+...+..+++.+
T Consensus 18 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~ 97 (208)
T 2yc2_C 18 TLRCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTAGSDLYKEQISQYWNGV 97 (208)
T ss_dssp EEEEEEEEC----------------------------------CEEEECTTSSEEEEEEEEETTTTHHHHHHHSTTCCCC
T ss_pred ccceEEEEECCCCCCHHHHHHHHHhCCCcccCCCCCccceEEEEEEEEECCcccEEEEEEEECCCcHHHHHHHHHHHhhC
Confidence 56799999999999999999999987 66666667765 334445544 57899999999999999989999999
Q ss_pred CEEEEEEeCCCCCCHHHHHHHHHHHHcCCC--CCCCcEEEEeeCCCccc-cc--CHHHHHHHhCcccccCCceeEEEeee
Q 030429 82 SAILYVVDAADRDSVPIARSELHELLMKPS--LSGIPLLVLGNKIDKSE-AL--SKQALVDQLGLESITDREVCCYMISC 156 (177)
Q Consensus 82 d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~--~~~~~~iiv~nK~D~~~-~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa 156 (177)
|++++|+|++++.+++....|+..+..... ..+.|+++|+||+|+.+ .. ..++..+.... .+++++++||
T Consensus 98 d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~v~~~~~~~~~~~-----~~~~~~~~Sa 172 (208)
T 2yc2_C 98 YYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLVANKTDLPPQRHQVRLDMAQDWATT-----NTLDFFDVSA 172 (208)
T ss_dssp CEEEEEEETTCHHHHHHHHHHHHHHHHHCSCTTSCCEEEEEEECC-------CCCHHHHHHHHHH-----TTCEEEECCC
T ss_pred cEEEEEEECCCHHHHHHHHHHHHHHHHhhcccccCCcEEEEEECcccchhhccCCHHHHHHHHHH-----cCCEEEEecc
Confidence 999999999999999999988888866433 25789999999999976 22 22222222211 1247999999
Q ss_pred cC-CCChHHHHHHHHHHhhh
Q 030429 157 KD-SINIDAVIDWLIKHSKT 175 (177)
Q Consensus 157 ~~-~~~i~~l~~~l~~~~~~ 175 (177)
++ |.|++++|++|.+.+.+
T Consensus 173 ~~~~~gi~~l~~~i~~~~~~ 192 (208)
T 2yc2_C 173 NPPGKDADAPFLSIATTFYR 192 (208)
T ss_dssp -------CHHHHHHHHHHHH
T ss_pred CCCCcCHHHHHHHHHHHHHH
Confidence 99 99999999999987654
|
| >1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=1.7e-31 Score=180.67 Aligned_cols=163 Identities=26% Similarity=0.458 Sum_probs=115.4
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeE--EEEEeC---CEEEEEEecCCchhhHHhHHHHhcCCCE
Q 030429 9 FKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNM--RKVTKG---NVTIKLWDLGGQRRFRTMWERYCRGVSA 83 (177)
Q Consensus 9 ~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~--~~~~~~---~~~~~~~D~~g~~~~~~~~~~~~~~~d~ 83 (177)
.+..++|+++|++|||||||++++.++.+.....++.+... ..+..+ ...+.+||+||++.+...+..+++.+|+
T Consensus 5 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 84 (182)
T 1ky3_A 5 KKNILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAFYRGADC 84 (182)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC----------CCSTTCCE
T ss_pred cCceEEEEEECCCCCCHHHHHHHHHhCcCCcccCCccceEEEEEEEEEcCCcEEEEEEEECCCChHhhhhhHHHhhcCCE
Confidence 46679999999999999999999998888777767665433 334333 4789999999999999988899999999
Q ss_pred EEEEEeCCCCCCHHHHHHHHHHHHcCC---CCCCCcEEEEeeCCCccccc---CHHHHHHHhCcccccCCceeEEEeeec
Q 030429 84 ILYVVDAADRDSVPIARSELHELLMKP---SLSGIPLLVLGNKIDKSEAL---SKQALVDQLGLESITDREVCCYMISCK 157 (177)
Q Consensus 84 ~i~v~d~~~~~~~~~~~~~~~~~~~~~---~~~~~~~iiv~nK~D~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 157 (177)
+++|+|++++.+++....|+..+.... ...+.|+++|+||+|+.+.. ..++..+... .....+++++||+
T Consensus 85 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~v~~~~~~~~~~----~~~~~~~~~~Sa~ 160 (182)
T 1ky3_A 85 CVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKIVSEKSAQELAK----SLGDIPLFLTSAK 160 (182)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGCCSCHHHHHHHHH----HTTSCCEEEEBTT
T ss_pred EEEEEECCChHHHHHHHHHHHHHHHHhcccCcCCCcEEEEEECCccccccccCCHHHHHHHHH----hcCCCeEEEEecC
Confidence 999999999999988888887765532 22578999999999995432 2222222211 1234579999999
Q ss_pred CCCChHHHHHHHHHHhhh
Q 030429 158 DSINIDAVIDWLIKHSKT 175 (177)
Q Consensus 158 ~~~~i~~l~~~l~~~~~~ 175 (177)
+|.|++++|++|.+.+.+
T Consensus 161 ~~~gi~~l~~~l~~~~~~ 178 (182)
T 1ky3_A 161 NAINVDTAFEEIARSALQ 178 (182)
T ss_dssp TTBSHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHH
Confidence 999999999999998764
|
| >2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=5.5e-31 Score=181.26 Aligned_cols=161 Identities=22% Similarity=0.317 Sum_probs=119.5
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCcccee--EEEEEeCC--EEEEEEecCCchhhHHhHHHHhcCCCEE
Q 030429 9 FKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFN--MRKVTKGN--VTIKLWDLGGQRRFRTMWERYCRGVSAI 84 (177)
Q Consensus 9 ~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~--~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~~ 84 (177)
.++.+||+++|++|||||||+++++++.+.....++.+.. ...+..++ +.+.+|||||+..+...+..+++.+|++
T Consensus 22 ~~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~ 101 (200)
T 2o52_A 22 SDFLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGA 101 (200)
T ss_dssp CCEEEEEEEEESTTSSHHHHHHHHHC------------CCEEEEEEEETTEEEEEEEECCTTHHHHSCCCHHHHTTCSEE
T ss_pred cCcceEEEEECcCCCCHHHHHHHHHhCCCCccCCCcccceeEEEEEEECCeeeEEEEEcCCCcHhHHHHHHHHhccCCEE
Confidence 4667999999999999999999999888777666666533 33444554 7899999999999988888899999999
Q ss_pred EEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccC--HHHHHHHhCcccccCCceeEEEeeecCCCCh
Q 030429 85 LYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALS--KQALVDQLGLESITDREVCCYMISCKDSINI 162 (177)
Q Consensus 85 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i 162 (177)
++|+|++++.++..+..|+..+..... .+.|+++|+||+|+.+... .++..+... ..+++++++||++|.|+
T Consensus 102 i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~v~~~~~~~~~~-----~~~~~~~~~SA~~g~gi 175 (200)
T 2o52_A 102 LLVYDITSRETYNSLAAWLTDARTLAS-PNIVVILCGNKKDLDPEREVTFLEASRFAQ-----ENELMFLETSALTGENV 175 (200)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHTC-TTCEEEEEEECGGGGGGCCSCHHHHHHHHH-----HTTCEEEEECTTTCTTH
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhcC-CCCcEEEEEECCCcccccccCHHHHHHHHH-----HcCCEEEEEeCCCCCCH
Confidence 999999999999998888887755322 5789999999999965322 222222211 12347999999999999
Q ss_pred HHHHHHHHHHhhh
Q 030429 163 DAVIDWLIKHSKT 175 (177)
Q Consensus 163 ~~l~~~l~~~~~~ 175 (177)
+++|++|.+.+.+
T Consensus 176 ~~l~~~l~~~i~~ 188 (200)
T 2o52_A 176 EEAFLKCARTILN 188 (200)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999988754
|
| >3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=7.3e-31 Score=179.06 Aligned_cols=164 Identities=16% Similarity=0.238 Sum_probs=117.1
Q ss_pred cccceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEE-EEEeC--CEEEEEEecCCchhhHHhHHHHhcCCCEE
Q 030429 8 FFKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMR-KVTKG--NVTIKLWDLGGQRRFRTMWERYCRGVSAI 84 (177)
Q Consensus 8 ~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~~ 84 (177)
...+.++|+++|.+|||||||++++.++.+.....++.+.... .+..+ .+.+.+||+||+.++...+..++..+|++
T Consensus 17 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 96 (190)
T 3con_A 17 QGMTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGF 96 (190)
T ss_dssp --CEEEEEEEECSTTSSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC-----------CTTCSEE
T ss_pred cccceeEEEEECcCCCCHHHHHHHHHcCCCccccCCccceEEEEEEEECCEEEEEEEEECCChHHHHHHHHHhhCcCCEE
Confidence 4456799999999999999999999988877666666554432 33333 36799999999999999889999999999
Q ss_pred EEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccc-CHHHHHHHhCcccccCCceeEEEeeecCCCChH
Q 030429 85 LYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEAL-SKQALVDQLGLESITDREVCCYMISCKDSINID 163 (177)
Q Consensus 85 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 163 (177)
++|+|++++.++.....|+..+.......+.|+++|+||+|+.+.. ..++..+.... .+++++++||++|.|++
T Consensus 97 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~Sa~~~~gi~ 171 (190)
T 3con_A 97 LCVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDLPTRTVDTKQAHELAKS-----YGIPFIETSAKTRQGVE 171 (190)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSCCCSCHHHHHHHHHH-----HTCCEEECCTTTCTTHH
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCcCCcccCCHHHHHHHHHH-----cCCeEEEEeCCCCCCHH
Confidence 9999999999999888888777654433578999999999987632 22222222111 12369999999999999
Q ss_pred HHHHHHHHHhhhc
Q 030429 164 AVIDWLIKHSKTA 176 (177)
Q Consensus 164 ~l~~~l~~~~~~~ 176 (177)
+++++|.+.+.+.
T Consensus 172 ~l~~~l~~~~~~~ 184 (190)
T 3con_A 172 DAFYTLVREIRQY 184 (190)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999988754
|
| >3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.7e-31 Score=182.01 Aligned_cols=162 Identities=23% Similarity=0.277 Sum_probs=121.9
Q ss_pred cccceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEE-EEe--CCEEEEEEecCCchhhHHhHHHHhcCCCEE
Q 030429 8 FFKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRK-VTK--GNVTIKLWDLGGQRRFRTMWERYCRGVSAI 84 (177)
Q Consensus 8 ~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~-~~~--~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~ 84 (177)
...+.+||+++|.+|||||||+++++++.+...+.+|.+..... ... ..+.+.+|||||++.+... ..++..+|++
T Consensus 17 ~~~~~~ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~-~~~~~~~~~~ 95 (187)
T 3c5c_A 17 QGPLEVNLAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTYSSEETVDHQPVHLRVMDTADLDTPRNC-ERYLNWAHAF 95 (187)
T ss_dssp ---CEEEEEEECCTTSSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC---CCCT-HHHHTTCSEE
T ss_pred CCCceEEEEEECCCCCcHHHHHHHHHhCCCCcccCCCccceeeEEEEECCEEEEEEEEECCCCCcchhH-HHHHhhCCEE
Confidence 44677999999999999999999999988887777777755422 233 3478999999999888764 5688999999
Q ss_pred EEEEeCCCCCCHHHHHHHHHHHHcCCC--CCCCcEEEEeeCCCcccccC--HHHHHHHhCcccccCCceeEEEeee-cCC
Q 030429 85 LYVVDAADRDSVPIARSELHELLMKPS--LSGIPLLVLGNKIDKSEALS--KQALVDQLGLESITDREVCCYMISC-KDS 159 (177)
Q Consensus 85 i~v~d~~~~~~~~~~~~~~~~~~~~~~--~~~~~~iiv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa-~~~ 159 (177)
++|||++++.+++.+..|+..+..... ..+.|+++|+||+|+.+... .++..+.... .+++++++|| ++|
T Consensus 96 ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~-----~~~~~~e~Sa~~~g 170 (187)
T 3c5c_A 96 LVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLDMAQYRQVTKAEGVALAGR-----FGCLFFEVSACLDF 170 (187)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECGGGGGGCSSCHHHHHHHHHH-----HTCEEEECCSSSCS
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHhhccCCCCCEEEEEECcchhhcCccCHHHHHHHHHH-----cCCcEEEEeecCcc
Confidence 999999999999999988887765421 14789999999999965322 2222221111 1237999999 899
Q ss_pred CChHHHHHHHHHHhhh
Q 030429 160 INIDAVIDWLIKHSKT 175 (177)
Q Consensus 160 ~~i~~l~~~l~~~~~~ 175 (177)
.|++++|+.|.+.+.+
T Consensus 171 ~gv~~lf~~l~~~i~~ 186 (187)
T 3c5c_A 171 EHVQHVFHEAVREARR 186 (187)
T ss_dssp HHHHHHHHHHHHHHHC
T ss_pred ccHHHHHHHHHHHHhh
Confidence 9999999999998765
|
| >2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.5e-31 Score=185.96 Aligned_cols=166 Identities=22% Similarity=0.265 Sum_probs=105.2
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEE-EEEeC--CEEEEEEecCCchhhHHhHHHHhcCCCEEE
Q 030429 9 FKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMR-KVTKG--NVTIKLWDLGGQRRFRTMWERYCRGVSAIL 85 (177)
Q Consensus 9 ~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i 85 (177)
..+.+||+++|++|||||||+++++++.+...+.++...... .+..+ .+.+.+|||||++++...+..++..+|+++
T Consensus 31 ~~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i 110 (214)
T 2j1l_A 31 GVRSVKVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFERYMVNLQVKGKPVHLHIWDTAGQDDYDRLRPLFYPDASVLL 110 (214)
T ss_dssp -CCEEEEEEEECTTSSHHHHHHHHHC-------CCCCCEEEEEEEEETTEEEEEEEEEC---------------CEEEEE
T ss_pred CcceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEECCEEEEEEEEECCCchhhhHHHHHHhccCCEEE
Confidence 356799999999999999999999988877666666654332 23333 468999999999999998899999999999
Q ss_pred EEEeCCCCCCHHHHH-HHHHHHHcCCCCCCCcEEEEeeCCCcccccCHHHHHHHhCc---------cccc-CCceeEEEe
Q 030429 86 YVVDAADRDSVPIAR-SELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGL---------ESIT-DREVCCYMI 154 (177)
Q Consensus 86 ~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~---------~~~~-~~~~~~~~~ 154 (177)
+|+|++++.++..+. .|+..+.... .+.|+++|+||+|+.+.....+..+.... .... ....+++++
T Consensus 111 ~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 188 (214)
T 2j1l_A 111 LCFDVTSPNSFDNIFNRWYPEVNHFC--KKVPIIVVGCKTDLRKDKSLVNKLRRNGLEPVTYHRGQEMARSVGAVAYLEC 188 (214)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHC--SSCCEEEEEECGGGGSCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEEC
T ss_pred EEEECcCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEEChhhhccchhhhhhcccccCcccHHHHHHHHHhcCCCEEEEe
Confidence 999999999999886 5666554432 46899999999999765322111111000 0000 112379999
Q ss_pred eecCCCChHHHHHHHHHHhhhc
Q 030429 155 SCKDSINIDAVIDWLIKHSKTA 176 (177)
Q Consensus 155 Sa~~~~~i~~l~~~l~~~~~~~ 176 (177)
||++|.|++++|++|.+.+.+.
T Consensus 189 SA~~g~gi~el~~~l~~~~~~~ 210 (214)
T 2j1l_A 189 SARLHDNVHAVFQEAAEVALSS 210 (214)
T ss_dssp BTTTTBSHHHHHHHHHHHHHHC
T ss_pred cCCCCCCHHHHHHHHHHHHHHh
Confidence 9999999999999999988754
|
| >1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B* | Back alignment and structure |
|---|
Probab=99.97 E-value=3.1e-31 Score=183.10 Aligned_cols=163 Identities=25% Similarity=0.400 Sum_probs=127.1
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEE--EEeC--CEEEEEEecCCchhhHHhHHHHhcCCCEE
Q 030429 9 FKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRK--VTKG--NVTIKLWDLGGQRRFRTMWERYCRGVSAI 84 (177)
Q Consensus 9 ~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~--~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~~ 84 (177)
.+..++|+++|++|||||||++++.+..+...+.++.+..... +..+ .+.+.+||+||+..+...+..+++.+|++
T Consensus 5 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 84 (207)
T 1vg8_A 5 KKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCC 84 (207)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSCSCCGGGTTCSEE
T ss_pred cCcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHhHHHHHhCCcEE
Confidence 4677999999999999999999999988887777777655443 3333 47899999999999988888899999999
Q ss_pred EEEEeCCCCCCHHHHHHHHHHHHcCCC---CCCCcEEEEeeCCCcccccC-HHHHHHHhCcccccCCceeEEEeeecCCC
Q 030429 85 LYVVDAADRDSVPIARSELHELLMKPS---LSGIPLLVLGNKIDKSEALS-KQALVDQLGLESITDREVCCYMISCKDSI 160 (177)
Q Consensus 85 i~v~d~~~~~~~~~~~~~~~~~~~~~~---~~~~~~iiv~nK~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 160 (177)
++|+|++++.++.....|+..+..... ..+.|+++|+||+|+.+... .++..+... .....+++++||++|.
T Consensus 85 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~----~~~~~~~~~~Sa~~g~ 160 (207)
T 1vg8_A 85 VLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLENRQVATKRAQAWCY----SKNNIPYFETSAKEAI 160 (207)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSSCCCSCHHHHHHHHH----HTTSCCEEECBTTTTB
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhcccccCCCCcEEEEEECCCCcccccCHHHHHHHHH----hcCCceEEEEeCCCCC
Confidence 999999999888888888777654322 24689999999999974322 222222211 1234579999999999
Q ss_pred ChHHHHHHHHHHhhh
Q 030429 161 NIDAVIDWLIKHSKT 175 (177)
Q Consensus 161 ~i~~l~~~l~~~~~~ 175 (177)
|++++|++|.+.+.+
T Consensus 161 gi~~l~~~l~~~~~~ 175 (207)
T 1vg8_A 161 NVEQAFQTIARNALK 175 (207)
T ss_dssp SHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHH
Confidence 999999999988754
|
| >2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=6.6e-31 Score=181.53 Aligned_cols=161 Identities=27% Similarity=0.408 Sum_probs=128.6
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEE--EEEeCC--EEEEEEecCCchhhHHhHHHHhcCCCEE
Q 030429 9 FKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMR--KVTKGN--VTIKLWDLGGQRRFRTMWERYCRGVSAI 84 (177)
Q Consensus 9 ~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~--~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~~ 84 (177)
.+..+||+++|++|||||||+++|.++.+...+.++.+.... .+..++ +.+.+|||||++++...+..+++.+|++
T Consensus 5 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~v 84 (206)
T 2bcg_Y 5 YDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSHGI 84 (206)
T ss_dssp CSEEEEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGGTTCSEE
T ss_pred cCcceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEeCCChHHHHHHHHHhccCCCEE
Confidence 466799999999999999999999998888777777664443 344444 6899999999999988888999999999
Q ss_pred EEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccC--HHHHHHHhCcccccCCceeEEEeeecCCCCh
Q 030429 85 LYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALS--KQALVDQLGLESITDREVCCYMISCKDSINI 162 (177)
Q Consensus 85 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i 162 (177)
++|+|++++.++..+..|+..+.... ....|+++|+||+|+.+... .++..+... ..+++++++||++|.|+
T Consensus 85 ilv~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~g~gi 158 (206)
T 2bcg_Y 85 IIVYDVTDQESFNGVKMWLQEIDRYA-TSTVLKLLVGNKCDLKDKRVVEYDVAKEFAD-----ANKMPFLETSALDSTNV 158 (206)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHS-CTTCEEEEEEECTTCTTTCCSCHHHHHHHHH-----HTTCCEEECCTTTCTTH
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECCCCccccccCHHHHHHHHH-----HcCCeEEEEeCCCCCCH
Confidence 99999999999999988888775543 24789999999999976422 222222211 12347999999999999
Q ss_pred HHHHHHHHHHhhh
Q 030429 163 DAVIDWLIKHSKT 175 (177)
Q Consensus 163 ~~l~~~l~~~~~~ 175 (177)
+++|++|.+.+.+
T Consensus 159 ~~l~~~l~~~i~~ 171 (206)
T 2bcg_Y 159 EDAFLTMARQIKE 171 (206)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999998764
|
| >2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.97 E-value=1.5e-30 Score=180.00 Aligned_cols=168 Identities=18% Similarity=0.223 Sum_probs=121.1
Q ss_pred ccccceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEE-EEEeCC--EEEEEEecCCchhhHHhHHHHhcCCCE
Q 030429 7 LFFKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMR-KVTKGN--VTIKLWDLGGQRRFRTMWERYCRGVSA 83 (177)
Q Consensus 7 ~~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ 83 (177)
+-....+||+++|.+|||||||++++.++.+...+.++.+.... .+..++ +.+.+|||||++++...+..++..+|+
T Consensus 20 ~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ 99 (207)
T 2fv8_A 20 FQSMIRKKLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDV 99 (207)
T ss_dssp GGGSEEEEEEEEECTTSSHHHHHHHHHHSSCC-------CCEEEEEEEETTEEEEEEEEECTTCTTCTTTGGGGCTTCCE
T ss_pred cccccCcEEEEECcCCCCHHHHHHHHhcCCCCCcCCCcccceEEEEEEECCEEEEEEEEECCCcHHHHHHHHhhcCCCCE
Confidence 34456789999999999999999999988887766666654432 234443 789999999999998888889999999
Q ss_pred EEEEEeCCCCCCHHHH-HHHHHHHHcCCCCCCCcEEEEeeCCCcccccCHHHHHHHhCcccc----------cCCceeEE
Q 030429 84 ILYVVDAADRDSVPIA-RSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESI----------TDREVCCY 152 (177)
Q Consensus 84 ~i~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~----------~~~~~~~~ 152 (177)
+++|+|++++.++... ..|+..+.... .+.|+++|+||+|+.+.....+....+..... .....+++
T Consensus 100 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 177 (207)
T 2fv8_A 100 ILMCFSVDSPDSLENIPEKWVPEVKHFC--PNVPIILVANKKDLRSDEHVRTELARMKQEPVRTDDGRAMAVRIQAYDYL 177 (207)
T ss_dssp EEEEEETTCHHHHHHHHHTHHHHHHHHS--TTCCEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEE
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEEchhhhccccchhhhhhcccCCCCHHHHHHHHHhcCCCEEE
Confidence 9999999999888888 45555554322 47899999999999765322222222111100 01122799
Q ss_pred EeeecCCCChHHHHHHHHHHhhhc
Q 030429 153 MISCKDSINIDAVIDWLIKHSKTA 176 (177)
Q Consensus 153 ~~Sa~~~~~i~~l~~~l~~~~~~~ 176 (177)
++||++|.|+++++++|.+.+.+.
T Consensus 178 ~~SA~~g~gi~el~~~l~~~i~~~ 201 (207)
T 2fv8_A 178 ECSAKTKEGVREVFETATRAALQK 201 (207)
T ss_dssp ECCTTTCTTHHHHHHHHHHHHHSC
T ss_pred EeeCCCCCCHHHHHHHHHHHHHHH
Confidence 999999999999999999987654
|
| >4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=99.97 E-value=8.2e-32 Score=187.59 Aligned_cols=162 Identities=22% Similarity=0.311 Sum_probs=126.4
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEe--C-C--EEEEEEecCCchhhHHhHHHHhcCCCE
Q 030429 9 FKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTK--G-N--VTIKLWDLGGQRRFRTMWERYCRGVSA 83 (177)
Q Consensus 9 ~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~--~-~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ 83 (177)
....+||+++|.+|||||||+++++++.+.....++.+........ . + +.+.+|||||++.+...+..++..+|+
T Consensus 8 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 87 (218)
T 4djt_A 8 RELTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQEKKAVLKDVYYIGASG 87 (218)
T ss_dssp --CEEEEEEECCTTSSHHHHHCBCTTCSTTCEEETTTTEEEEEEEEEBTTSCEEEEEEEEECSGGGTSCCCHHHHTTCSE
T ss_pred ccCccEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeeEEEEEEeCCCcEEEEEEEecCCchhhchHHHHHhhcCCE
Confidence 3467999999999999999999999888877777777765555432 1 1 789999999999998888899999999
Q ss_pred EEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccC--HHHHHHHhCcccccCCceeEEEeeecCCCC
Q 030429 84 ILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALS--KQALVDQLGLESITDREVCCYMISCKDSIN 161 (177)
Q Consensus 84 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 161 (177)
+++|+|++++.++.....|+..+..... .+.|+++|+||+|+.+... .+...+... ..+++++++||++|.|
T Consensus 88 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~g~g 161 (218)
T 4djt_A 88 AILFFDVTSRITCQNLARWVKEFQAVVG-NEAPIVVCANKIDIKNRQKISKKLVMEVLK-----GKNYEYFEISAKTAHN 161 (218)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHHC-SSSCEEEEEECTTCC----CCHHHHHHHTT-----TCCCEEEEEBTTTTBT
T ss_pred EEEEEeCCCHHHHHHHHHHHHHHHHhcC-CCCCEEEEEECCCCccccccCHHHHHHHHH-----HcCCcEEEEecCCCCC
Confidence 9999999999999888888777755422 3589999999999976422 222222222 2345799999999999
Q ss_pred hHHHHHHHHHHhhhc
Q 030429 162 IDAVIDWLIKHSKTA 176 (177)
Q Consensus 162 i~~l~~~l~~~~~~~ 176 (177)
++++|++|.+.+.+.
T Consensus 162 v~~l~~~l~~~~~~~ 176 (218)
T 4djt_A 162 FGLPFLHLARIFTGR 176 (218)
T ss_dssp TTHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHhcc
Confidence 999999999988654
|
| >3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.97 E-value=8.6e-31 Score=181.63 Aligned_cols=158 Identities=27% Similarity=0.439 Sum_probs=125.1
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeE--EEEEeCC--EEEEEEecCCchhhHHhHHHHhcCCCEE
Q 030429 9 FKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNM--RKVTKGN--VTIKLWDLGGQRRFRTMWERYCRGVSAI 84 (177)
Q Consensus 9 ~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~--~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~~ 84 (177)
.+..++|+++|++|||||||++++++..+.....++.+... ..+..++ +.+.+|||||++.+...+..++..+|++
T Consensus 17 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~i 96 (213)
T 3cph_A 17 YDSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRTITTAYYRGAMGI 96 (213)
T ss_dssp ---CEEEEEECSTTSSHHHHHHHHHHCCCCCSSSCCCSCCEEEEEEEETTEEEEEEEECCTTGGGGTCCCHHHHTTCSEE
T ss_pred CCcceEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCCEE
Confidence 45679999999999999999999998888777777666443 3455555 7899999999999998888999999999
Q ss_pred EEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccC-HH---HHHHHhCcccccCCceeEEEeeecCCC
Q 030429 85 LYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALS-KQ---ALVDQLGLESITDREVCCYMISCKDSI 160 (177)
Q Consensus 85 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~-~~---~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 160 (177)
++|+|++++.++.....|+..+..... .+.|+++|+||+|+.+... .+ ++.+.+ +++++++||++|.
T Consensus 97 i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~--------~~~~~~~Sa~~~~ 167 (213)
T 3cph_A 97 ILVYDVTDERTFTNIKQWFKTVNEHAN-DEAQLLLVGNKSDMETRVVTADQGEALAKEL--------GIPFIESSAKNDD 167 (213)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHTT-TCSEEEEEEECTTCSSCCSCHHHHHHHHHHH--------TCCEEECBTTTTB
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCEEEEEECCCCcccccCHHHHHHHHHHc--------CCEEEEEeCCCCC
Confidence 999999999888888888877755432 4689999999999954322 22 222222 2369999999999
Q ss_pred ChHHHHHHHHHHhhh
Q 030429 161 NIDAVIDWLIKHSKT 175 (177)
Q Consensus 161 ~i~~l~~~l~~~~~~ 175 (177)
|++++|++|.+.+.+
T Consensus 168 gi~~l~~~l~~~~~~ 182 (213)
T 3cph_A 168 NVNEIFFTLAKLIQE 182 (213)
T ss_dssp SSHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHH
Confidence 999999999988754
|
| >3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.1e-30 Score=182.59 Aligned_cols=162 Identities=22% Similarity=0.340 Sum_probs=122.0
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCcccee--EEEEEeCC--EEEEEEecCCchhhHHhHHHHhcCCCEE
Q 030429 9 FKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFN--MRKVTKGN--VTIKLWDLGGQRRFRTMWERYCRGVSAI 84 (177)
Q Consensus 9 ~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~--~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~~ 84 (177)
.+..++|+++|++|||||||+++|.++.+...+.++.+.. ...+..++ +.+.+|||||++++...+..+++.+|++
T Consensus 10 ~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~v 89 (223)
T 3cpj_B 10 YDLLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQERYRAITSAYYRGAVGA 89 (223)
T ss_dssp CCEEEEEEEESCTTSSHHHHHHHHHHCCCCC------CCSEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGTTTCCEE
T ss_pred CCeeeEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCccchhhhHHHHhccCCEE
Confidence 4667999999999999999999999988877766666643 33455555 7899999999999998888999999999
Q ss_pred EEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccC--HHHHHHHhCcccccCCceeEEEeeecCCCCh
Q 030429 85 LYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALS--KQALVDQLGLESITDREVCCYMISCKDSINI 162 (177)
Q Consensus 85 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i 162 (177)
++|+|++++.+++.+..|+..+.... ..+.|+++|+||+|+.+... .++..+... ..+++++++||++|.|+
T Consensus 90 ilV~D~~~~~s~~~~~~~l~~i~~~~-~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~-----~~~~~~~~~Sa~~~~gi 163 (223)
T 3cpj_B 90 LIVYDISKSSSYENCNHWLSELRENA-DDNVAVGLIGNKSDLAHLRAVPTEESKTFAQ-----ENQLLFTETSALNSENV 163 (223)
T ss_dssp EEEEC-CCHHHHHHHHHHHHHHHHHC-C--CEEEEEECCGGGGGGCCSCHHHHHHHHH-----HTTCEEEECCCC-CCCH
T ss_pred EEEEeCCCHHHHHHHHHHHHHHHHhC-CCCCeEEEEEECcccccccccCHHHHHHHHH-----HcCCEEEEEeCCCCCCH
Confidence 99999999999999988888775543 25789999999999975322 222222211 12347999999999999
Q ss_pred HHHHHHHHHHhhhc
Q 030429 163 DAVIDWLIKHSKTA 176 (177)
Q Consensus 163 ~~l~~~l~~~~~~~ 176 (177)
+++|++|.+.+.++
T Consensus 164 ~~l~~~l~~~i~~~ 177 (223)
T 3cpj_B 164 DKAFEELINTIYQK 177 (223)
T ss_dssp HHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999987643
|
| >1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ... | Back alignment and structure |
|---|
Probab=99.97 E-value=3.3e-31 Score=179.91 Aligned_cols=165 Identities=20% Similarity=0.245 Sum_probs=123.5
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEE-EEEe--CCEEEEEEecCCchhhHHhHHHHhcCCCEEEE
Q 030429 10 KQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMR-KVTK--GNVTIKLWDLGGQRRFRTMWERYCRGVSAILY 86 (177)
Q Consensus 10 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~--~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~ 86 (177)
.+.+||+++|++|||||||++++.++.+...+.++.+.... .+.. ..+.+.+||+||++++...+..++..+|++++
T Consensus 3 ~~~~~i~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~ 82 (186)
T 1mh1_A 3 PQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSLI 82 (186)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHSSCCSSCCCCSCCEEEEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEEE
T ss_pred CcEEEEEEECCCCCCHHHHHHHHHcCCCCCCcCCcccceeEEEEEECCEEEEEEEEECCCCHhHHHHHHHhccCCcEEEE
Confidence 46789999999999999999999988887776666654332 2333 34678899999999998888889999999999
Q ss_pred EEeCCCCCCHHHHH-HHHHHHHcCCCCCCCcEEEEeeCCCcccccCHHHHHHHhCcc---------cccCCc-eeEEEee
Q 030429 87 VVDAADRDSVPIAR-SELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLE---------SITDRE-VCCYMIS 155 (177)
Q Consensus 87 v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~---------~~~~~~-~~~~~~S 155 (177)
|+|++++.++.... .|+..+.... .+.|+++|+||+|+.+.....+..+..... .....+ .+++++|
T Consensus 83 v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~S 160 (186)
T 1mh1_A 83 CFSLVSPASFENVRAKWYPEVRHHC--PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECS 160 (186)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHHS--TTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECC
T ss_pred EEECCChhhHHHHHHHHHHHHHHhC--CCCCEEEEeEcccccccchhhhhhcccccccCCHHHHHHHHHhcCCcEEEEec
Confidence 99999998898887 5665554432 378999999999997642211111111000 000112 3799999
Q ss_pred ecCCCChHHHHHHHHHHhhhc
Q 030429 156 CKDSINIDAVIDWLIKHSKTA 176 (177)
Q Consensus 156 a~~~~~i~~l~~~l~~~~~~~ 176 (177)
|++|.|++++|++|.+.+.+.
T Consensus 161 a~~g~gi~~l~~~l~~~~~~~ 181 (186)
T 1mh1_A 161 ALTQRGLKTVFDEAIRAVLCP 181 (186)
T ss_dssp TTTCTTHHHHHHHHHHHHSCC
T ss_pred CCCccCHHHHHHHHHHHHhcc
Confidence 999999999999999987653
|
| >4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=3.4e-31 Score=182.89 Aligned_cols=164 Identities=20% Similarity=0.249 Sum_probs=120.8
Q ss_pred cccceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEE-EEE--eCCEEEEEEecCCchhhHHhHHHHhcCCCEE
Q 030429 8 FFKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMR-KVT--KGNVTIKLWDLGGQRRFRTMWERYCRGVSAI 84 (177)
Q Consensus 8 ~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~--~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~ 84 (177)
...+.+||+++|.+|||||||++++.++.+...+.++.+.... .+. ...+.+.+|||||++++...+..++..+|++
T Consensus 26 ~~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ 105 (204)
T 4gzl_A 26 FQGQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVF 105 (204)
T ss_dssp ----CEEEEEEESTTSSHHHHHHHHHHSCCCC-CCCCSEEEEEEEEECC-CEEEEEEEEECCSGGGTTTGGGGCTTCSEE
T ss_pred hcCCeEEEEEECcCCCCHHHHHHHHHhCCCCCCcCCeecceeEEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEE
Confidence 3467799999999999999999999988887777666653333 223 3456777999999999998888899999999
Q ss_pred EEEEeCCCCCCHHHHH-HHHHHHHcCCCCCCCcEEEEeeCCCcccccCHHHHHHHhCccc----------ccCCceeEEE
Q 030429 85 LYVVDAADRDSVPIAR-SELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLES----------ITDREVCCYM 153 (177)
Q Consensus 85 i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~ 153 (177)
++|+|++++.++.... .|+..+.... .+.|+++|+||+|+.+.....+..+...... ......++++
T Consensus 106 i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 183 (204)
T 4gzl_A 106 LICFSLVSPASFENVRAKWYPEVRHHC--PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLE 183 (204)
T ss_dssp EEEEETTCHHHHHHHHHTHHHHHHHHC--SSCCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEE
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEechhhccchhhhhhhhccccccccHHHHHHHHHhcCCcEEEE
Confidence 9999999999999887 5555554432 5789999999999976533222222111100 0112236999
Q ss_pred eeecCCCChHHHHHHHHHHh
Q 030429 154 ISCKDSINIDAVIDWLIKHS 173 (177)
Q Consensus 154 ~Sa~~~~~i~~l~~~l~~~~ 173 (177)
+||++|.|++++|++|.+.+
T Consensus 184 ~SA~~g~gi~~l~~~l~~~~ 203 (204)
T 4gzl_A 184 CSALTQRGLKTVFDEAIRAV 203 (204)
T ss_dssp CCTTTCTTHHHHHHHHHHTT
T ss_pred eeCCCCCCHHHHHHHHHHHh
Confidence 99999999999999998864
|
| >2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2 | Back alignment and structure |
|---|
Probab=99.97 E-value=2.5e-30 Score=179.60 Aligned_cols=163 Identities=24% Similarity=0.313 Sum_probs=116.6
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEeC---CEEEEEEecCCchhhHH-hHHHHhcCCCEEE
Q 030429 10 KQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTKG---NVTIKLWDLGGQRRFRT-MWERYCRGVSAIL 85 (177)
Q Consensus 10 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~---~~~~~~~D~~g~~~~~~-~~~~~~~~~d~~i 85 (177)
++.+||+++|++|||||||+++|+++.+...+.++ ......+..+ .+.+.+|||||+.++.. .+..+++.+|+++
T Consensus 5 ~~~~ki~vvG~~~~GKTsli~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~i 83 (214)
T 2fh5_B 5 SSQRAVLFVGLCDSGKTLLFVRLLTGQYRDTQTSI-TDSSAIYKVNNNRGNSLTLIDLPGHESLRFQLLDRFKSSARAVV 83 (214)
T ss_dssp ---CEEEEECSTTSSHHHHHHHHHHSCCCCBCCCC-SCEEEEEECSSTTCCEEEEEECCCCHHHHHHHHHHHGGGEEEEE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCcccccCCc-ceeeEEEEecCCCccEEEEEECCCChhHHHHHHHHHHhhCCEEE
Confidence 56789999999999999999999988877666543 3444445555 68999999999999987 7788899999999
Q ss_pred EEEeCCCCC-CHHHHHHHHHHHHcC--CCCCCCcEEEEeeCCCcccccCHHHHHHHhCc---------------------
Q 030429 86 YVVDAADRD-SVPIARSELHELLMK--PSLSGIPLLVLGNKIDKSEALSKQALVDQLGL--------------------- 141 (177)
Q Consensus 86 ~v~d~~~~~-~~~~~~~~~~~~~~~--~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~--------------------- 141 (177)
+|+|+++.. ++.....++...+.. ....+.|+++|+||+|+.+....+...+.+..
T Consensus 84 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~s~~~~~~~ 163 (214)
T 2fh5_B 84 FVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAKSAKLIQQQLEKELNTLRVTRSAAPSTLDSSST 163 (214)
T ss_dssp EEEETTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHHHCC-----------
T ss_pred EEEECCCcCHHHHHHHHHHHHHHhhhhhcccCCCEEEEEECCCCCCcccHHHHHHHHHHHHHHHhccchhccccccCCcc
Confidence 999998742 344555555554332 12246899999999999876554333222210
Q ss_pred --cccc---------C--CceeEEEeeecCC------CChHHHHHHHHHHh
Q 030429 142 --ESIT---------D--REVCCYMISCKDS------INIDAVIDWLIKHS 173 (177)
Q Consensus 142 --~~~~---------~--~~~~~~~~Sa~~~------~~i~~l~~~l~~~~ 173 (177)
.... . ..+++++|||++| .|++++|++|.+.+
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~e~SAk~g~~~~~~~gv~~lf~~l~~~~ 214 (214)
T 2fh5_B 164 APAQLGKKGKEFEFSQLPLKVEFLECSAKGGRGDTGSADIQDLEKWLAKIA 214 (214)
T ss_dssp -CCCSSCTTSCCCGGGSSSCEEEEECBCC-------CCBCHHHHHHHHHHC
T ss_pred ccccccCCCCCcccccCCCcEEEEEeeccCCCccccccChHHHHHHHHHhC
Confidence 0000 1 1678999999999 99999999998753
|
| >2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.97 E-value=4.9e-31 Score=182.91 Aligned_cols=159 Identities=23% Similarity=0.318 Sum_probs=123.9
Q ss_pred cccceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEE-EEEe--CCEEEEEEecCCchhhHHhHHHHhcCCCEE
Q 030429 8 FFKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMR-KVTK--GNVTIKLWDLGGQRRFRTMWERYCRGVSAI 84 (177)
Q Consensus 8 ~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~--~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~ 84 (177)
.....+||+++|++|+|||||++++.++.+...+.+|.+.... .+.. ..+.+.+|||||++++...+..+++.+|++
T Consensus 5 ~~~~~~ki~i~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ 84 (212)
T 2j0v_A 5 SVSKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGQIVNLGLWDTAGQEDYSRLRPLSYRGADIF 84 (212)
T ss_dssp SCCCEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCSSCCCEEEEEECSSCEEEEEEECCCCCCCCCC--CGGGTTCSEE
T ss_pred CcCceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceeEEEEEEECCEEEEEEEEECCCcHHHHHHHHhhccCCCEE
Confidence 3457899999999999999999999988887777777764443 2333 347999999999999998888899999999
Q ss_pred EEEEeCCCCCCHHHHH-HHHHHHHcCCCCCCCcEEEEeeCCCccccc----------CHHH---HHHHhCcccccCCcee
Q 030429 85 LYVVDAADRDSVPIAR-SELHELLMKPSLSGIPLLVLGNKIDKSEAL----------SKQA---LVDQLGLESITDREVC 150 (177)
Q Consensus 85 i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~----------~~~~---~~~~~~~~~~~~~~~~ 150 (177)
++|+|++++.++.... .|+..+.... ++.|+++|+||+|+.+.. ..++ +.+.++ ..+
T Consensus 85 ilv~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~v~~~~~~~~~~~~~-------~~~ 155 (212)
T 2j0v_A 85 VLAFSLISKASYENVLKKWMPELRRFA--PNVPIVLVGTKLDLRDDKGYLADHTNVITSTQGEELRKQIG-------AAA 155 (212)
T ss_dssp EEEEETTCHHHHHHHHHTHHHHHHHHC--TTCCEEEEEECHHHHTCHHHHHTCSSCCCHHHHHHHHHHHT-------CSE
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEeCHHhhhCccccccccCCCCHHHHHHHHHHcC-------Cce
Confidence 9999999999999886 5666664432 378999999999986542 1222 222221 137
Q ss_pred EEEeeecCCCChHHHHHHHHHHhhh
Q 030429 151 CYMISCKDSINIDAVIDWLIKHSKT 175 (177)
Q Consensus 151 ~~~~Sa~~~~~i~~l~~~l~~~~~~ 175 (177)
++++||++|.|++++|++|.+.+.+
T Consensus 156 ~~~~Sa~~g~gi~~l~~~l~~~~~~ 180 (212)
T 2j0v_A 156 YIECSSKTQQNVKAVFDTAIKVVLQ 180 (212)
T ss_dssp EEECCTTTCTTHHHHHHHHHHHHHC
T ss_pred EEEccCCCCCCHHHHHHHHHHHHhh
Confidence 9999999999999999999998764
|
| >2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.97 E-value=4.6e-31 Score=181.15 Aligned_cols=162 Identities=18% Similarity=0.271 Sum_probs=125.0
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEE-EEe--CCEEEEEEecCCchhhHHhHHHHhcCCCEEEE
Q 030429 10 KQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRK-VTK--GNVTIKLWDLGGQRRFRTMWERYCRGVSAILY 86 (177)
Q Consensus 10 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~-~~~--~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~ 86 (177)
...++|+++|.+|||||||+++|.++.+...+.++.+..... ... ..+.+.+|||||+..+...+..++..+|++++
T Consensus 6 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~ 85 (199)
T 2gf0_A 6 SNDYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDTYRQVISCDKSVCTLQITDTTGSHQFPAMQRLSISKGHAFIL 85 (199)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHSCCCCTTSCCCCEEEEEEEEETTEEEEEEEEECCGGGSCHHHHHHHHHHCSEEEE
T ss_pred CCeeEEEEECCCCCcHHHHHHHHHcCCCCCcccCccccceeEEEEECCEEEEEEEEeCCChHHhHHHHHHhhccCCEEEE
Confidence 467999999999999999999999888877777776654443 222 34689999999999999989999999999999
Q ss_pred EEeCCCCCCHHHHHHHHHHHHcCCC-CCCCcEEEEeeCCCcccccC-HHHHHHHhCcccccCCceeEEEeeecCCCChHH
Q 030429 87 VVDAADRDSVPIARSELHELLMKPS-LSGIPLLVLGNKIDKSEALS-KQALVDQLGLESITDREVCCYMISCKDSINIDA 164 (177)
Q Consensus 87 v~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~~iiv~nK~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 164 (177)
|+|++++.+++....|+..+..... ..+.|+++|+||+|+.+... .++..+.... ..++++++||++|.|+++
T Consensus 86 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~Sa~~~~gi~~ 160 (199)
T 2gf0_A 86 VFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCDETQREVDTREAQAVAQE-----WKCAFMETSAKMNYNVKE 160 (199)
T ss_dssp EEETTCHHHHHTTHHHHHHHHHHHSCGGGSCEEEEEECTTCSSCSSCHHHHHHHHHH-----HTCEEEECBTTTTBSHHH
T ss_pred EEECcCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCCccccCHHHHHHHHHH-----hCCeEEEEecCCCCCHHH
Confidence 9999998888888777765544211 24689999999999976322 2222221111 123799999999999999
Q ss_pred HHHHHHHHhhhc
Q 030429 165 VIDWLIKHSKTA 176 (177)
Q Consensus 165 l~~~l~~~~~~~ 176 (177)
++++|.+.+.++
T Consensus 161 l~~~l~~~~~~~ 172 (199)
T 2gf0_A 161 LFQELLTLETRR 172 (199)
T ss_dssp HHHHHHHHCSSS
T ss_pred HHHHHHHHHhhh
Confidence 999999987543
|
| >3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C | Back alignment and structure |
|---|
Probab=99.97 E-value=1.9e-31 Score=180.62 Aligned_cols=160 Identities=22% Similarity=0.330 Sum_probs=111.4
Q ss_pred ccccceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEE---EEEeCCEEEEEEecCCchhhHHhHHHHhcCCCE
Q 030429 7 LFFKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMR---KVTKGNVTIKLWDLGGQRRFRTMWERYCRGVSA 83 (177)
Q Consensus 7 ~~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~---~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ 83 (177)
+..++.+||+++|++|+|||||++++.++.+...+.+|.+.... ......+.+.+||+||++++...+..+++.+|+
T Consensus 3 ~~~~~~~ki~v~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ 82 (182)
T 3bwd_D 3 MSASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGATVNLGLWDTAGQEDYNRLRPLSYRGADV 82 (182)
T ss_dssp ----CCCEEEEECSTTSSHHHHHHHHHHSCCC----------CBCCCC-------CEEECCCC-CTTTTTGGGGGTTCSE
T ss_pred CCCCceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCeeeeeEEEEEEECCEEEEEEEEECCCChhhhhhHHhhccCCCE
Confidence 34567899999999999999999999988877666666543222 123345778899999999999888899999999
Q ss_pred EEEEEeCCCCCCHHHHH-HHHHHHHcCCCCCCCcEEEEeeCCCcccccC------------HH---HHHHHhCcccccCC
Q 030429 84 ILYVVDAADRDSVPIAR-SELHELLMKPSLSGIPLLVLGNKIDKSEALS------------KQ---ALVDQLGLESITDR 147 (177)
Q Consensus 84 ~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~------------~~---~~~~~~~~~~~~~~ 147 (177)
+++|+|++++.+++... .|+..+.... .+.|+++|+||+|+.+... .+ ++.+.++
T Consensus 83 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~v~~~~~~~~~~~~~------- 153 (182)
T 3bwd_D 83 FILAFSLISKASYENVSKKWIPELKHYA--PGVPIVLVGTKLDLRDDKQFFIDHPGAVPITTVQGEELKKLIG------- 153 (182)
T ss_dssp EEEEEETTCHHHHHHHHHTHHHHHHHHC--TTCCEEEEEECHHHHTCHHHHHHC--CCCCCHHHHHHHHHHHT-------
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEechhhhcCcccccccccCCCCCHHHHHHHHHHcC-------
Confidence 99999999999999887 5666554432 3789999999999865422 11 1122221
Q ss_pred ceeEEEeeecCCCChHHHHHHHHHHhhh
Q 030429 148 EVCCYMISCKDSINIDAVIDWLIKHSKT 175 (177)
Q Consensus 148 ~~~~~~~Sa~~~~~i~~l~~~l~~~~~~ 175 (177)
..+++++||++|.|++++|++|.+.+.+
T Consensus 154 ~~~~~~~Sa~~~~gi~~l~~~l~~~i~~ 181 (182)
T 3bwd_D 154 APAYIECSSKSQENVKGVFDAAIRVVLQ 181 (182)
T ss_dssp CSEEEECCTTTCTTHHHHHHHHHHHHSC
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHhc
Confidence 1379999999999999999999987653
|
| >2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.97 E-value=3.1e-30 Score=176.54 Aligned_cols=161 Identities=19% Similarity=0.209 Sum_probs=124.6
Q ss_pred cccceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEE-EEEeCC--EEEEEEecCCchhhHHhHHHHhcCCCEE
Q 030429 8 FFKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMR-KVTKGN--VTIKLWDLGGQRRFRTMWERYCRGVSAI 84 (177)
Q Consensus 8 ~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~~ 84 (177)
..++.+||+++|++|||||||++++.++.+...+.+|.+.... .+..++ +.+.+||+||++++...+..+++.+|++
T Consensus 14 ~~~~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 93 (194)
T 2atx_A 14 PGALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVF 93 (194)
T ss_dssp CEEEEEEEEEEECTTSSHHHHHHHHHHSSCCCSCCCSSCCCEEEEEESSSCEEEEEEECCCCSSSSTTTGGGGCTTCSEE
T ss_pred CCCceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEECCEEEEEEEEECCCCcchhHHHHHhcCCCCEE
Confidence 3457799999999999999999999988887777777664442 344444 8899999999999998888999999999
Q ss_pred EEEEeCCCCCCHHHHH-HHHHHHHcCCCCCCCcEEEEeeCCCcccccC--------------HHHHHHHhCcccccCCce
Q 030429 85 LYVVDAADRDSVPIAR-SELHELLMKPSLSGIPLLVLGNKIDKSEALS--------------KQALVDQLGLESITDREV 149 (177)
Q Consensus 85 i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~--------------~~~~~~~~~~~~~~~~~~ 149 (177)
++|+|++++.++.... .|+..+.... .+.|+++|+||+|+.+... .++..+.... ....
T Consensus 94 i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~----~~~~ 167 (194)
T 2atx_A 94 LICFSVVNPASFQNVKEEWVPELKEYA--PNVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKE----IGAC 167 (194)
T ss_dssp EEEEETTCHHHHHHHHHTHHHHHHHHS--TTCCEEEEEECTTSTTCHHHHHHHTTTTCCCCCHHHHHHHHHH----HTCS
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEEChhhcccccchhhcccccCcccCHHHHHHHHHH----cCCc
Confidence 9999999999999887 5666665432 3789999999999976421 1111111100 0112
Q ss_pred eEEEeeecCCCChHHHHHHHHHHhh
Q 030429 150 CCYMISCKDSINIDAVIDWLIKHSK 174 (177)
Q Consensus 150 ~~~~~Sa~~~~~i~~l~~~l~~~~~ 174 (177)
+++++||++|.|++++|++|.+.+.
T Consensus 168 ~~~~~Sa~~g~gi~~l~~~l~~~i~ 192 (194)
T 2atx_A 168 CYVECSALTQKGLKTVFDEAIIAIL 192 (194)
T ss_dssp CEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred EEEEeeCCCCCCHHHHHHHHHHHHh
Confidence 6999999999999999999998765
|
| >1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B* | Back alignment and structure |
|---|
Probab=99.97 E-value=7.8e-31 Score=178.22 Aligned_cols=161 Identities=16% Similarity=0.195 Sum_probs=122.5
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEE-EEE--eCCEEEEEEecCCchhhHHhHHHHhcCCCEEE
Q 030429 9 FKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMR-KVT--KGNVTIKLWDLGGQRRFRTMWERYCRGVSAIL 85 (177)
Q Consensus 9 ~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~--~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i 85 (177)
.+..+||+++|++|||||||++++.++.+...+.+|.+.... .+. ...+.+.+||+||++.+...+..+++.+|+++
T Consensus 4 ~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i 83 (184)
T 1m7b_A 4 QNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVL 83 (184)
T ss_dssp --CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEECSSCEEEEEEEEECCSGGGTTTGGGGCTTCSEEE
T ss_pred CceEEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEECCEEEEEEEEECCCChhhhhhHHhhcCCCcEEE
Confidence 456799999999999999999999998887777777664443 233 34578999999999999888888999999999
Q ss_pred EEEeCCCCCCHHHH-HHHHHHHHcCCCCCCCcEEEEeeCCCccccc--------------CHHHHHHHhCcccccCCcee
Q 030429 86 YVVDAADRDSVPIA-RSELHELLMKPSLSGIPLLVLGNKIDKSEAL--------------SKQALVDQLGLESITDREVC 150 (177)
Q Consensus 86 ~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~--------------~~~~~~~~~~~~~~~~~~~~ 150 (177)
+|+|++++.++... ..|+..+.... ++.|+++|+||+|+.+.. ..++..+.... ....+
T Consensus 84 ~v~d~~~~~s~~~~~~~~~~~i~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~----~~~~~ 157 (184)
T 1m7b_A 84 ICFDISRPETLDSVLKKWKGEIQEFC--PNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQ----IGAAT 157 (184)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHC--TTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHH----HTCSE
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHHC--CCCCEEEEEEcchhhcchhhHhhhhhcccCCCCHHHHHHHHHH----cCCcE
Confidence 99999999999888 56665554432 478999999999997521 11111111100 01247
Q ss_pred EEEeeec-CCCChHHHHHHHHHHhhh
Q 030429 151 CYMISCK-DSINIDAVIDWLIKHSKT 175 (177)
Q Consensus 151 ~~~~Sa~-~~~~i~~l~~~l~~~~~~ 175 (177)
++++||+ ++.|++++|+.+.+.+.+
T Consensus 158 ~~e~Sa~~~~~gi~~l~~~i~~~~l~ 183 (184)
T 1m7b_A 158 YIECSALQSENSVRDIFHVATLACVN 183 (184)
T ss_dssp EEECBTTTBHHHHHHHHHHHHHHHHT
T ss_pred EEEeeecCCCcCHHHHHHHHHHHHhc
Confidence 9999999 689999999999998764
|
| >2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.9e-30 Score=178.55 Aligned_cols=163 Identities=21% Similarity=0.222 Sum_probs=116.4
Q ss_pred ccccceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEE-EEEeCC--EEEEEEecCCchhhHHhHHHHhcCCCE
Q 030429 7 LFFKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMR-KVTKGN--VTIKLWDLGGQRRFRTMWERYCRGVSA 83 (177)
Q Consensus 7 ~~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ 83 (177)
...+..+||+++|.+|||||||++++.++.+...+.+|.+.... .+..++ +.+.+|||||++++...+..++..+|+
T Consensus 15 ~~~~~~~ki~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ 94 (201)
T 2q3h_A 15 GAEGRGVKCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTAFDNFSAVVSVDGRPVRLQLCDTAGQDEFDKLRPLCYTNTDI 94 (201)
T ss_dssp -----CEEEEEECSTTSSHHHHHHHHHC--------CCSSEEEEEEEEETTEEEEEEEEECCCSTTCSSSGGGGGTTCSE
T ss_pred CCCCcceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcccceeEEEEEECCEEEEEEEEECCCCHHHHHHhHhhcCCCcE
Confidence 34567899999999999999999999988877777777664443 344444 678899999999998888889999999
Q ss_pred EEEEEeCCCCCCHHHHH-HHHHHHHcCCCCCCCcEEEEeeCCCccccc--------------CHHHHHHHhCcccccCCc
Q 030429 84 ILYVVDAADRDSVPIAR-SELHELLMKPSLSGIPLLVLGNKIDKSEAL--------------SKQALVDQLGLESITDRE 148 (177)
Q Consensus 84 ~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~--------------~~~~~~~~~~~~~~~~~~ 148 (177)
+++|+|++++.++.... .|+..+.... .+.|+++|+||+|+.+.. ..++..+.... ...
T Consensus 95 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~----~~~ 168 (201)
T 2q3h_A 95 FLLCFSVVSPSSFQNVSEKWVPEIRCHC--PKAPIILVGTQSDLREDVKVLIELDKCKEKPVPEEAAKLLAEE----IKA 168 (201)
T ss_dssp EEEEEETTCHHHHHHHHHTHHHHHHHHC--SSSCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHH----HTC
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEECHhhhhchhhhhhhcccccccCCHHHHHHHHHh----cCC
Confidence 99999999999999886 5666665432 378999999999997531 11111111100 012
Q ss_pred eeEEEeeecCCCChHHHHHHHHHHhhh
Q 030429 149 VCCYMISCKDSINIDAVIDWLIKHSKT 175 (177)
Q Consensus 149 ~~~~~~Sa~~~~~i~~l~~~l~~~~~~ 175 (177)
.+++++||++|.|++++|++|.+.+.+
T Consensus 169 ~~~~~~Sa~~g~gi~~l~~~l~~~~~~ 195 (201)
T 2q3h_A 169 ASYIECSALTQKNLKEVFDAAIVAGIQ 195 (201)
T ss_dssp SEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred cEEEEEecCCCCCHHHHHHHHHHHHhc
Confidence 379999999999999999999988754
|
| >3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ... | Back alignment and structure |
|---|
Probab=99.97 E-value=1.3e-31 Score=187.04 Aligned_cols=162 Identities=22% Similarity=0.392 Sum_probs=128.6
Q ss_pred cccceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEE----eCCEEEEEEecCCchhhHHhHHHHhcCCCE
Q 030429 8 FFKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVT----KGNVTIKLWDLGGQRRFRTMWERYCRGVSA 83 (177)
Q Consensus 8 ~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~----~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ 83 (177)
.....+||+++|.+|||||||+++++.+.+...+.++.+.+..... ...+.+.+|||||++.+...+..+++.+|+
T Consensus 11 ~~~~~~ki~v~G~~~~GKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ 90 (221)
T 3gj0_A 11 EPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQC 90 (221)
T ss_dssp CCCCEEEEEEEECTTSSHHHHHTTBHHHHHTCEEETTTTEEEEEEEEEETTEEEEEEEEEECSGGGTSCCCHHHHTTCCE
T ss_pred CcccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCChHHHhHHHHHHHhcCCE
Confidence 4566799999999999999999998777766666677665554432 345789999999999999888999999999
Q ss_pred EEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccCHHHHHHHhCcccccCCceeEEEeeecCCCChH
Q 030429 84 ILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCKDSINID 163 (177)
Q Consensus 84 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 163 (177)
+++|+|++++.++..+..|+..+.... .+.|+++|+||+|+.+.....+.. ......+++++++||++|.|++
T Consensus 91 ~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ilv~nK~Dl~~~~~~~~~~-----~~~~~~~~~~~~~Sa~~~~gi~ 163 (221)
T 3gj0_A 91 AIIMFDVTSRVTYKNVPNWHRDLVRVC--ENIPIVLCGNKVDIKDRKVKAKSI-----VFHRKKNLQYYDISAKSNYNFE 163 (221)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHS--TTCCEEEEEECTTSSSCSSCGGGC-----CHHHHHTCEEEECBGGGTBTTT
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhC--CCCCEEEEEECCccccccccHHHH-----HHHHHcCCEEEEEeCCCCCCHH
Confidence 999999999999999988888887653 378999999999997643221111 1111123579999999999999
Q ss_pred HHHHHHHHHhhhc
Q 030429 164 AVIDWLIKHSKTA 176 (177)
Q Consensus 164 ~l~~~l~~~~~~~ 176 (177)
++|++|.+.+.+.
T Consensus 164 ~l~~~l~~~l~~~ 176 (221)
T 3gj0_A 164 KPFLWLARKLIGD 176 (221)
T ss_dssp HHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhC
Confidence 9999999987653
|
| >2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ... | Back alignment and structure |
|---|
Probab=99.97 E-value=4.3e-30 Score=176.93 Aligned_cols=164 Identities=19% Similarity=0.249 Sum_probs=122.8
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeE-EEEEeC--CEEEEEEecCCchhhHHhHHHHhcCCCEEEE
Q 030429 10 KQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNM-RKVTKG--NVTIKLWDLGGQRRFRTMWERYCRGVSAILY 86 (177)
Q Consensus 10 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~ 86 (177)
...+||+++|.+|||||||++++.++.+...+.++.+... ..+..+ .+.+.+||+||++++...+..++..+|++++
T Consensus 23 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~ 102 (201)
T 2gco_A 23 AIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYIADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILM 102 (201)
T ss_dssp CEEEEEEEEESTTSSHHHHHHHHHHSSCCSSCCCSSCCCCEEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEEE
T ss_pred ccceEEEEECCCCCCHHHHHHHHHhCcCCcccCCcccceEEEEEEECCEEEEEEEEECCCchhHHHHHHHhcCCCCEEEE
Confidence 4578999999999999999999999888777767666443 223444 4689999999999998888889999999999
Q ss_pred EEeCCCCCCHHHH-HHHHHHHHcCCCCCCCcEEEEeeCCCcccccCHHHHHHHhCccc---------c-cCCceeEEEee
Q 030429 87 VVDAADRDSVPIA-RSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLES---------I-TDREVCCYMIS 155 (177)
Q Consensus 87 v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~---------~-~~~~~~~~~~S 155 (177)
|+|++++.++... ..|+..+.... .+.|+++|+||+|+.+.....+..+.+.... . .....+++++|
T Consensus 103 v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~S 180 (201)
T 2gco_A 103 CFSIDSPDSLENIPEKWTPEVKHFC--PNVPIILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECS 180 (201)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHHS--TTCCEEEEEECGGGTTCHHHHHHHHTTTCCCCCHHHHHHHHHHTTCSEEEECC
T ss_pred EEECCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEecHHhhcCccchhhhcccccCcCCHHHHHHHHHhCCCcEEEEee
Confidence 9999999899888 45555443322 4789999999999976532221111110000 0 01122799999
Q ss_pred ecCCCChHHHHHHHHHHhhh
Q 030429 156 CKDSINIDAVIDWLIKHSKT 175 (177)
Q Consensus 156 a~~~~~i~~l~~~l~~~~~~ 175 (177)
|++|.|+++++++|.+.+.+
T Consensus 181 A~~g~gi~~l~~~i~~~~l~ 200 (201)
T 2gco_A 181 AKTKEGVREVFEMATRAGLQ 200 (201)
T ss_dssp TTTCTTHHHHHHHHHHHHHC
T ss_pred CCCCCCHHHHHHHHHHHHhc
Confidence 99999999999999988753
|
| >2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B* | Back alignment and structure |
|---|
Probab=99.97 E-value=6.7e-31 Score=178.61 Aligned_cols=163 Identities=17% Similarity=0.296 Sum_probs=115.7
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcC--CCCCCCCCccceeEEEEE-------eCCEEEEEEecCCchhhHHhHHHHhcCCC
Q 030429 12 EMELSLIGLQNAGKTSLVNTIATG--GYSEDMIPTVGFNMRKVT-------KGNVTIKLWDLGGQRRFRTMWERYCRGVS 82 (177)
Q Consensus 12 ~~~i~i~G~~~~GKSsli~~l~~~--~~~~~~~~t~~~~~~~~~-------~~~~~~~~~D~~g~~~~~~~~~~~~~~~d 82 (177)
.+||+++|++|||||||++++++. .+...+.+|.+....... ...+.+.+|||+|++++......++.+++
T Consensus 2 ~~kv~ivG~~gvGKStLl~~l~~~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ 81 (184)
T 2zej_A 2 RMKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGREEFYSTHPHFMTQRA 81 (184)
T ss_dssp -CEEEEESCTTSSHHHHHHHHTCC-----------CSEEEEEEEC---------CEEEEEEECSHHHHHTTSHHHHHHSE
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCccCCCcceeccEEeEEeeeccccCCCCceEEEEEecCCCHHHHHhhHHHccCCc
Confidence 579999999999999999999974 344555677776655433 24678999999999999888888899999
Q ss_pred EEEEEEeCCCC-CCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccCHH----HHHHHhCcccccCCceeEEEeeec
Q 030429 83 AILYVVDAADR-DSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQ----ALVDQLGLESITDREVCCYMISCK 157 (177)
Q Consensus 83 ~~i~v~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~Sa~ 157 (177)
++++|+|++++ .++..+..|+..+.... .+.|+++|+||+|+.+..... +..+.+..........+++++||+
T Consensus 82 ~~i~v~d~~~~~~s~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 159 (184)
T 2zej_A 82 LYLAVYDLSKGQAEVDAMKPWLFNIKARA--SSSPVILVGTHLDVSDEKQRKACMSKITKELLNKRGFPAIRDYHFVNAT 159 (184)
T ss_dssp EEEEEEEGGGCHHHHHTHHHHHHHHHHHC--TTCEEEEEEECGGGCCHHHHHHHHHHHHHHTTTCTTSCEEEEEEECCTT
T ss_pred EEEEEEeCCcchhHHHHHHHHHHHHHhhC--CCCcEEEEEECCCcccchhhHHHHHHHHHHHHHhcCCcchhheEEEecc
Confidence 99999999997 57888888888775532 368999999999997643221 112222211111111248999999
Q ss_pred CCC-ChHHHHHHHHHHhhhc
Q 030429 158 DSI-NIDAVIDWLIKHSKTA 176 (177)
Q Consensus 158 ~~~-~i~~l~~~l~~~~~~~ 176 (177)
++. +++++++.|.+.+.+.
T Consensus 160 ~~~~~~~~l~~~i~~~~~~~ 179 (184)
T 2zej_A 160 EESDALAKLRKTIINESLNF 179 (184)
T ss_dssp SCCHHHHHHHHHHHHHHHCC
T ss_pred cCchhHHHHHHHHHHHHhcc
Confidence 997 9999999999887654
|
| >2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.97 E-value=2e-30 Score=179.62 Aligned_cols=162 Identities=20% Similarity=0.170 Sum_probs=116.0
Q ss_pred cccceeEEEEEcCCCCCHHHHHHHHhcCCC--CCCCCCcccee--EEEEEeCC--EEEEEEecCCchh-hHHhHHHHhcC
Q 030429 8 FFKQEMELSLIGLQNAGKTSLVNTIATGGY--SEDMIPTVGFN--MRKVTKGN--VTIKLWDLGGQRR-FRTMWERYCRG 80 (177)
Q Consensus 8 ~~~~~~~i~i~G~~~~GKSsli~~l~~~~~--~~~~~~t~~~~--~~~~~~~~--~~~~~~D~~g~~~-~~~~~~~~~~~ 80 (177)
.....+||+++|.+|||||||+++|++... ...+. +.+.+ ...+..++ +.+.+|||+|+.. +......+++.
T Consensus 33 ~~~~~~kVvlvG~~~vGKSSLl~r~~~~~~~~~~~~~-~~g~d~~~~~i~~~~~~~~l~~~Dt~g~~~~~~~l~~~~~~~ 111 (211)
T 2g3y_A 33 SGNTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCE-VLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQV 111 (211)
T ss_dssp --CCEEEEEEECCTTSSHHHHHHHHHCCCCTTCCC----CCTTEEEEEEEETTEEEEEEEECCTTTTHHHHHHHHCCCCC
T ss_pred cCCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCcCC-ccceeeEEEEEEECCeeeEEEEeecCCCcchhhhHHHHHHhh
Confidence 345569999999999999999999985432 33222 23322 23344443 5678999999877 45555667888
Q ss_pred CCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccC--HHHHHHHhCcccccCCceeEEEeeecC
Q 030429 81 VSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALS--KQALVDQLGLESITDREVCCYMISCKD 158 (177)
Q Consensus 81 ~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 158 (177)
+|++++|||++++.+|+....|+..+.......++|+++|+||+|+.+... .++.. .+.. ..++++++|||++
T Consensus 112 a~~~ilVydvt~~~sf~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~r~v~~~e~~-~~a~----~~~~~~~e~SAk~ 186 (211)
T 2g3y_A 112 GDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRCREVSVSEGR-ACAV----VFDCKFIETSAAV 186 (211)
T ss_dssp CSEEEEEEETTCHHHHHHHHHHHHHHHTSGGGTTSCEEEEEECTTCGGGCCSCHHHHH-HHHH----HHTCEEEECBTTT
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCcEEEEEEChHHhcCceEeHHHHH-HHHH----HcCCEEEEEeCCC
Confidence 999999999999999999998887775543334789999999999975322 22211 1110 1124799999999
Q ss_pred CCChHHHHHHHHHHhhh
Q 030429 159 SINIDAVIDWLIKHSKT 175 (177)
Q Consensus 159 ~~~i~~l~~~l~~~~~~ 175 (177)
|.|++++|++|.+.+..
T Consensus 187 g~~v~elf~~l~~~i~~ 203 (211)
T 2g3y_A 187 QHNVKELFEGIVRQVRL 203 (211)
T ss_dssp TBSHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHH
Confidence 99999999999998754
|
| >1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.97 E-value=1.4e-30 Score=179.94 Aligned_cols=161 Identities=16% Similarity=0.195 Sum_probs=123.0
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEE-EEE--eCCEEEEEEecCCchhhHHhHHHHhcCCCEEE
Q 030429 9 FKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMR-KVT--KGNVTIKLWDLGGQRRFRTMWERYCRGVSAIL 85 (177)
Q Consensus 9 ~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~--~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i 85 (177)
.+..+||+++|++|||||||+++|.++.+...+.+|.+.... .+. ...+.+.+|||||++.+...+..++..+|+++
T Consensus 25 ~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i 104 (205)
T 1gwn_A 25 QNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVL 104 (205)
T ss_dssp --CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEESSSSEEEEEEEEECCSGGGTTTGGGGCTTCSEEE
T ss_pred cceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEECCEEEEEEEEeCCCcHhhhHHHHhhccCCCEEE
Confidence 456799999999999999999999998887777777665443 233 33588999999999999888888999999999
Q ss_pred EEEeCCCCCCHHHH-HHHHHHHHcCCCCCCCcEEEEeeCCCccccc--------------CHHHHHHHhCcccccCCcee
Q 030429 86 YVVDAADRDSVPIA-RSELHELLMKPSLSGIPLLVLGNKIDKSEAL--------------SKQALVDQLGLESITDREVC 150 (177)
Q Consensus 86 ~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~--------------~~~~~~~~~~~~~~~~~~~~ 150 (177)
+|+|++++.++..+ ..|+..+.... .+.|+++|+||+|+.+.. ..++..+.... ....+
T Consensus 105 lv~D~~~~~s~~~~~~~~~~~i~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~----~~~~~ 178 (205)
T 1gwn_A 105 ICFDISRPETLDSVLKKWKGEIQEFC--PNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQ----IGAAT 178 (205)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHC--TTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHH----HTCSE
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHHC--CCCCEEEEEechhhccchhhhhhhcccccCCCCHHHHHHHHHH----cCCCE
Confidence 99999999999988 56666664432 478999999999997421 11111111100 01247
Q ss_pred EEEeeec-CCCChHHHHHHHHHHhhh
Q 030429 151 CYMISCK-DSINIDAVIDWLIKHSKT 175 (177)
Q Consensus 151 ~~~~Sa~-~~~~i~~l~~~l~~~~~~ 175 (177)
+++|||+ ++.|++++|+.|.+.+.+
T Consensus 179 ~~e~SAk~~~~gv~~lf~~l~~~~l~ 204 (205)
T 1gwn_A 179 YIECSALQSENSVRDIFHVATLACVN 204 (205)
T ss_dssp EEECCTTTCHHHHHHHHHHHHHHHHH
T ss_pred EEEeeeccCCcCHHHHHHHHHHHHhh
Confidence 9999999 689999999999998765
|
| >2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=1.7e-29 Score=170.33 Aligned_cols=162 Identities=20% Similarity=0.296 Sum_probs=121.1
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCc--cceeEEEEEeCCEEEEEEecCCchhhHHhHHHHhcCCCEEEE
Q 030429 9 FKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPT--VGFNMRKVTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILY 86 (177)
Q Consensus 9 ~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t--~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~ 86 (177)
.++.++|+++|++|||||||++++.++.+.....++ .......+..++..+.+|||||++++...+..++..+|++++
T Consensus 5 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~ 84 (178)
T 2lkc_A 5 VERPPVVTIMGHVDHGKTTLLDAIRHSKVTEQEAGGITQHIGAYQVTVNDKKITFLDTPGHEAFTTMRARGAQVTDIVIL 84 (178)
T ss_dssp CCCCCEEEEESCTTTTHHHHHHHHHTTCSSCSSCCSSSTTCCCCEEEETTEEEEESCCCSSSSSSCSCCSSCCCCCEEEE
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCCccccCCCCceeEeeeEEEEEeCCceEEEEECCCCHHHHHHHHHHHhhCCEEEE
Confidence 457899999999999999999999988776554443 334445567788899999999999998887788899999999
Q ss_pred EEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccCHHHHHHHhCcccc-c-C--CceeEEEeeecCCCCh
Q 030429 87 VVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESI-T-D--REVCCYMISCKDSINI 162 (177)
Q Consensus 87 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~-~-~--~~~~~~~~Sa~~~~~i 162 (177)
|+|++++..... ...+..+.. .+.|+++|+||+|+.+. ..++..+.+..... . . ...+++++||++|.|+
T Consensus 85 v~d~~~~~~~~~-~~~l~~~~~----~~~p~ilv~nK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv 158 (178)
T 2lkc_A 85 VVAADDGVMPQT-VEAINHAKA----ANVPIIVAINKMDKPEA-NPDRVMQELMEYNLVPEEWGGDTIFCKLSAKTKEGL 158 (178)
T ss_dssp EEETTCCCCHHH-HHHHHHHGG----GSCCEEEEEETTTSSCS-CHHHHHHHHTTTTCCBTTTTSSEEEEECCSSSSHHH
T ss_pred EEECCCCCcHHH-HHHHHHHHh----CCCCEEEEEECccCCcC-CHHHHHHHHHhcCcChhHcCCcccEEEEecCCCCCH
Confidence 999988654333 233333322 36899999999999764 33344433322111 1 1 2368999999999999
Q ss_pred HHHHHHHHHHhhhc
Q 030429 163 DAVIDWLIKHSKTA 176 (177)
Q Consensus 163 ~~l~~~l~~~~~~~ 176 (177)
++++++|.+.+...
T Consensus 159 ~~l~~~l~~~~~~~ 172 (178)
T 2lkc_A 159 DHLLEMILLVSEME 172 (178)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhhhhh
Confidence 99999999987654
|
| >3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.3e-31 Score=184.27 Aligned_cols=159 Identities=28% Similarity=0.467 Sum_probs=119.1
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccc--eeEEEEEeCC--EEEEEEecCCchhhHHhHHHHhcCCCEE
Q 030429 9 FKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVG--FNMRKVTKGN--VTIKLWDLGGQRRFRTMWERYCRGVSAI 84 (177)
Q Consensus 9 ~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~--~~~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~~ 84 (177)
.+..+||+++|.+|||||||+++|.++.+.....++.+ .....+..++ +.+.+|||||++.+...+..+++.+|++
T Consensus 30 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ 109 (199)
T 3l0i_B 30 YDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGI 109 (199)
T ss_dssp CSEEEEEEEECCTTSCCTTTTTSSBCCCCCCHHHHHHCCSEEEEEEEETTEEEEEEEECCTTCTTCCCCSCC--CCCSEE
T ss_pred cCcceEEEEECCCCCCHHHHHHHHhcCCCCCCcCCcccceEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhhcCCEE
Confidence 35679999999999999999999998777666555544 3344455555 7899999999999988888899999999
Q ss_pred EEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccc-----CHHHHHHHhCcccccCCceeEEEeeecCC
Q 030429 85 LYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEAL-----SKQALVDQLGLESITDREVCCYMISCKDS 159 (177)
Q Consensus 85 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 159 (177)
++|+|++++.+++.+..|+..+.... ..+.|+++|+||+|+.+.. ..+++.+.+ +++++++||++|
T Consensus 110 i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~~--------~~~~~~vSA~~g 180 (199)
T 3l0i_B 110 IVVYDVTDQESFNNVKQWLQEIDRYA-SENVNKLLVGNKCDLTTKKVVDYTTAKEFADSL--------GIPFLETSAKNA 180 (199)
T ss_dssp EECC-CCCSHHHHHHHHHHHHHHSCC--CCSEEEEC-CCSSCC--CCCCSCC-CHHHHTT--------TCCBCCCCC---
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhc-cCCCCEEEEEECccCCccccCCHHHHHHHHHHc--------CCeEEEEECCCC
Confidence 99999999999999998888875543 3578999999999986542 222333332 346899999999
Q ss_pred CChHHHHHHHHHHhhhc
Q 030429 160 INIDAVIDWLIKHSKTA 176 (177)
Q Consensus 160 ~~i~~l~~~l~~~~~~~ 176 (177)
.|++++|++|.+.+.++
T Consensus 181 ~gv~~l~~~l~~~l~~~ 197 (199)
T 3l0i_B 181 TNVEQSFMTMAAEIKKR 197 (199)
T ss_dssp HHHHHHHHHHTTTTTTT
T ss_pred CCHHHHHHHHHHHHHHh
Confidence 99999999999887654
|
| >3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=5.8e-30 Score=175.61 Aligned_cols=163 Identities=21% Similarity=0.310 Sum_probs=112.2
Q ss_pred ccccceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCcccee--EEE--EE-eCCEEEEEEecCCchhhHHhH---HHHh
Q 030429 7 LFFKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFN--MRK--VT-KGNVTIKLWDLGGQRRFRTMW---ERYC 78 (177)
Q Consensus 7 ~~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~--~~~--~~-~~~~~~~~~D~~g~~~~~~~~---~~~~ 78 (177)
...++.+||+++|.+|||||||++++.+. +........+.. ... +. ...+.+++||+||+++|.... ..++
T Consensus 15 ~~~~~~~ki~~vG~~~vGKTsLi~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~ 93 (196)
T 3llu_A 15 YFQGSKPRILLMGLRRSGKSSIQKVVFHK-MSPNETLFLESTNKIYKDDISNSSFVNFQIWDFPGQMDFFDPTFDYEMIF 93 (196)
T ss_dssp -----CCEEEEEESTTSSHHHHHHHHHSC-CCGGGGGGCCCCCSCEEEEECCTTSCCEEEEECCSSCCTTCTTCCHHHHH
T ss_pred cccCcceEEEEECCCCCCHHHHHHHHHhc-CCCcceeeeccccceeeeeccCCCeeEEEEEECCCCHHHHhhhhhccccc
Confidence 34567899999999999999999988753 332222212211 122 22 456899999999999987766 7889
Q ss_pred cCCCEEEEEEeCCCC--CCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccCH----HHH----HHHhCcccccCCc
Q 030429 79 RGVSAILYVVDAADR--DSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSK----QAL----VDQLGLESITDRE 148 (177)
Q Consensus 79 ~~~d~~i~v~d~~~~--~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~----~~~----~~~~~~~~~~~~~ 148 (177)
+++|++++|+|++++ +++.....|+..+... ..+.|+++|+||+|+.+.... ..+ .+.+........+
T Consensus 94 ~~~~~~i~v~d~~~~~~~~~~~~~~~l~~~~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 171 (196)
T 3llu_A 94 RGTGALIYVIDAQDDYMEALTRLHITVSKAYKV--NPDMNFEVFIHKVDGLSDDHKIETQRDIHQRANDDLADAGLEKLH 171 (196)
T ss_dssp HTCSEEEEEEETTSCCHHHHHHHHHHHHHHHHH--CTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHHTTCTTSC
T ss_pred ccCCEEEEEEECCCchHHHHHHHHHHHHHHHhc--CCCCcEEEEEeccccCchhhhhHHHhHHHHHHHHHHHHhhhhcCC
Confidence 999999999999997 4555556666665322 247899999999998763211 112 1222221122456
Q ss_pred eeEEEeeecCCCChHHHHHHHHHHh
Q 030429 149 VCCYMISCKDSINIDAVIDWLIKHS 173 (177)
Q Consensus 149 ~~~~~~Sa~~~~~i~~l~~~l~~~~ 173 (177)
+++++|||++ .|++++|+.|.+.+
T Consensus 172 ~~~~e~Sa~~-~~v~~~f~~l~~~l 195 (196)
T 3llu_A 172 LSFYLTSIYD-HSIFEAFSKVVQKL 195 (196)
T ss_dssp EEEEEECTTS-THHHHHHHHHHHHT
T ss_pred cceEEEEech-hhHHHHHHHHHHHh
Confidence 7899999999 99999999999865
|
| >1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=1.4e-28 Score=168.37 Aligned_cols=162 Identities=20% Similarity=0.173 Sum_probs=109.7
Q ss_pred ccccceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeE--EEEEeCCEEEEEEecCC----------chhhHHhH
Q 030429 7 LFFKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNM--RKVTKGNVTIKLWDLGG----------QRRFRTMW 74 (177)
Q Consensus 7 ~~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~--~~~~~~~~~~~~~D~~g----------~~~~~~~~ 74 (177)
+.....++|+++|++|||||||++++++..+.....++.+.+. .....+ ..+.+||||| ++.+...+
T Consensus 18 ~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~-~~~~l~Dt~G~~~~~~~~~~~~~~~~~~ 96 (195)
T 1svi_A 18 YPEGGLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYIIN-DELHFVDVPGYGFAKVSKSEREAWGRMI 96 (195)
T ss_dssp SCCSCCCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEEET-TTEEEEECCCBCCCSSCHHHHHHHHHHH
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHhCCCCccccCCCCCceeeEEEEEEC-CcEEEEECCCCCccccCHHHHHHHHHHH
Confidence 3445679999999999999999999998765444444333211 122222 3689999999 77777777
Q ss_pred HHHhcCC---CEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccCHHHHHHHhCcccccCCceeE
Q 030429 75 ERYCRGV---SAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCC 151 (177)
Q Consensus 75 ~~~~~~~---d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (177)
..++..+ |++++|+|++++.+..... +...+.. .+.|+++|+||+|+.+........+.+..........++
T Consensus 97 ~~~~~~~~~~~~~i~v~d~~~~~~~~~~~--~~~~~~~---~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (195)
T 1svi_A 97 ETYITTREELKAVVQIVDLRHAPSNDDVQ--MYEFLKY---YGIPVIVIATKADKIPKGKWDKHAKVVRQTLNIDPEDEL 171 (195)
T ss_dssp HHHHHHCTTEEEEEEEEETTSCCCHHHHH--HHHHHHH---TTCCEEEEEECGGGSCGGGHHHHHHHHHHHHTCCTTSEE
T ss_pred HHHHhhhhcCCEEEEEEECCCCCCHHHHH--HHHHHHH---cCCCEEEEEECcccCChHHHHHHHHHHHHHHcccCCCce
Confidence 7777666 9999999999987776542 1122222 468999999999998765443333332211112345689
Q ss_pred EEeeecCCCChHHHHHHHHHHhh
Q 030429 152 YMISCKDSINIDAVIDWLIKHSK 174 (177)
Q Consensus 152 ~~~Sa~~~~~i~~l~~~l~~~~~ 174 (177)
+++||++|.|+++++++|.+.+.
T Consensus 172 ~~~Sa~~~~gv~~l~~~l~~~l~ 194 (195)
T 1svi_A 172 ILFSSETKKGKDEAWGAIKKMIN 194 (195)
T ss_dssp EECCTTTCTTHHHHHHHHHHHHT
T ss_pred EEEEccCCCCHHHHHHHHHHHhc
Confidence 99999999999999999998775
|
| >2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=3.4e-28 Score=162.49 Aligned_cols=148 Identities=23% Similarity=0.260 Sum_probs=109.2
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCC--ccceeEEEEEeCCEEEEEEecCCchhhH------HhHHHHhc--CC
Q 030429 12 EMELSLIGLQNAGKTSLVNTIATGGYSEDMIP--TVGFNMRKVTKGNVTIKLWDLGGQRRFR------TMWERYCR--GV 81 (177)
Q Consensus 12 ~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~--t~~~~~~~~~~~~~~~~~~D~~g~~~~~------~~~~~~~~--~~ 81 (177)
.++|+++|++|||||||++++.+..+.....+ +.......+..++..+.+|||||+.++. .....++. ++
T Consensus 3 ~~~v~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~ 82 (165)
T 2wji_A 3 SYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNGEKFKVVDLPGVYSLTANSIDEIIARDYIINEKP 82 (165)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCCSSSCC-----CCCCCEEEEEETTEEEEEEECCCCSCSSSSSHHHHHHHHHHHHHCC
T ss_pred ccEEEEECCCCCCHHHHHHHHhCCCeeccCCCCcceeeeEEEEEECCcEEEEEECCCcccCCCcchhHHHHHHHHhcCCC
Confidence 57999999999999999999997665433333 3334445566778999999999987763 33345554 89
Q ss_pred CEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccc----CHHHHHHHhCcccccCCceeEEEeeec
Q 030429 82 SAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEAL----SKQALVDQLGLESITDREVCCYMISCK 157 (177)
Q Consensus 82 d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 157 (177)
|++++|+|+++ ++....|+..+... +.|+++|+||+|+.+.. +.+++.+.++ ++++++||+
T Consensus 83 ~~~i~v~D~~~---~~~~~~~~~~~~~~----~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~--------~~~~~~SA~ 147 (165)
T 2wji_A 83 DLVVNIVDATA---LERNLYLTLQLMEM----GANLLLALNKMDLAKSLGIEIDVDKLEKILG--------VKVVPLSAA 147 (165)
T ss_dssp SEEEEEEETTC---HHHHHHHHHHHHHT----TCCEEEEEECHHHHHHTTCCCCHHHHHHHHT--------SCEEECBGG
T ss_pred CEEEEEecCCc---hhHhHHHHHHHHhc----CCCEEEEEEchHhccccChhhHHHHHHHHhC--------CCEEEEEcC
Confidence 99999999977 34445566665442 68999999999986432 2334444443 369999999
Q ss_pred CCCChHHHHHHHHHHhh
Q 030429 158 DSINIDAVIDWLIKHSK 174 (177)
Q Consensus 158 ~~~~i~~l~~~l~~~~~ 174 (177)
+|.|++++|++|.+.++
T Consensus 148 ~~~~v~~l~~~l~~~~~ 164 (165)
T 2wji_A 148 KKMGIEELKKAISIAVK 164 (165)
T ss_dssp GTBSHHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHHhh
Confidence 99999999999998764
|
| >2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.3e-28 Score=172.56 Aligned_cols=162 Identities=17% Similarity=0.156 Sum_probs=111.8
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcCCCCCCC--CCccceeEEEEEeCCEEEEEEecCCc------hhh---HHhHHHHh
Q 030429 10 KQEMELSLIGLQNAGKTSLVNTIATGGYSEDM--IPTVGFNMRKVTKGNVTIKLWDLGGQ------RRF---RTMWERYC 78 (177)
Q Consensus 10 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~--~~t~~~~~~~~~~~~~~~~~~D~~g~------~~~---~~~~~~~~ 78 (177)
.+.++|+++|.+|||||||+++|++..+.... ..+..........++..+.+|||||+ +.. ...+..++
T Consensus 27 ~~~~kI~vvG~~~vGKSsLin~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~ 106 (228)
T 2qu8_A 27 PHKKTIILSGAPNVGKSSFMNIVSRANVDVQSYSFTTKNLYVGHFDHKLNKYQIIDTPGLLDRAFENRNTIEMTTITALA 106 (228)
T ss_dssp TTSEEEEEECSTTSSHHHHHHHHTTTCEEEECC-----CEEEEEEEETTEEEEEEECTTTTTSCGGGCCHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCcceeeeeeeeecCCCeEEEEECCCCcCcccchhhhHHHHHHHHhh
Confidence 46799999999999999999999977654221 22444555556667899999999998 331 12234457
Q ss_pred cCCCEEEEEEeCCCCCCHHH--HHHHHHHHHcCCCCCCCcEEEEeeCCCcccccCHHH----HHHHhCcccccCCceeEE
Q 030429 79 RGVSAILYVVDAADRDSVPI--ARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQA----LVDQLGLESITDREVCCY 152 (177)
Q Consensus 79 ~~~d~~i~v~d~~~~~~~~~--~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~----~~~~~~~~~~~~~~~~~~ 152 (177)
..+|++++|+|++++.++.. ...++..+... ..+.|+++|+||+|+.+...... ..+.+.. ......+++
T Consensus 107 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~--~~~~~~~~~ 182 (228)
T 2qu8_A 107 HINGVILFIIDISEQCGLTIKEQINLFYSIKSV--FSNKSIVIGFNKIDKCNMDSLSIDNKLLIKQILD--NVKNPIKFS 182 (228)
T ss_dssp TSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTC--C-CCCEEEEEECGGGCC--CCCHHHHHHHHHHHH--HCCSCEEEE
T ss_pred ccccEEEEEEecccccCcchHHHHHHHHHHHHh--hcCCcEEEEEeCcccCCchhhHHHHHHHHHHHHH--hcCCCceEE
Confidence 88999999999999888752 23455555332 24789999999999976433211 1111111 011225899
Q ss_pred EeeecCCCChHHHHHHHHHHhhh
Q 030429 153 MISCKDSINIDAVIDWLIKHSKT 175 (177)
Q Consensus 153 ~~Sa~~~~~i~~l~~~l~~~~~~ 175 (177)
++||++|.|++++|++|.+.+.+
T Consensus 183 ~~SA~~g~gi~~l~~~l~~~i~~ 205 (228)
T 2qu8_A 183 SFSTLTGVGVEQAKITACELLKN 205 (228)
T ss_dssp ECCTTTCTTHHHHHHHHHHHHHH
T ss_pred EEecccCCCHHHHHHHHHHHHHH
Confidence 99999999999999999998764
|
| >3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.93 E-value=2e-31 Score=183.85 Aligned_cols=165 Identities=21% Similarity=0.257 Sum_probs=121.5
Q ss_pred ccccceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEE---EEEeCCEEEEEEecCCchhhHHhHHHHhcCCCE
Q 030429 7 LFFKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMR---KVTKGNVTIKLWDLGGQRRFRTMWERYCRGVSA 83 (177)
Q Consensus 7 ~~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~---~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ 83 (177)
+..++.+||+++|.+|||||||++++.++.+.....++.+.... ......+.+.+|||||++++...+..+++.+|+
T Consensus 25 ~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ 104 (204)
T 3th5_A 25 YFQGQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDV 104 (204)
Confidence 45578899999999999999999999987776665555543222 123445778899999999999988999999999
Q ss_pred EEEEEeCCCCCCHHHHH-HHHHHHHcCCCCCCCcEEEEeeCCCcccccCHHHH---------HHHhCcccccCCce-eEE
Q 030429 84 ILYVVDAADRDSVPIAR-SELHELLMKPSLSGIPLLVLGNKIDKSEALSKQAL---------VDQLGLESITDREV-CCY 152 (177)
Q Consensus 84 ~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~---------~~~~~~~~~~~~~~-~~~ 152 (177)
+++|+|++++.++.... .|+..+.... .+.|+++|+||+|+.+.....+. ............+. +++
T Consensus 105 iilv~D~~~~~s~~~~~~~~~~~l~~~~--~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 182 (204)
T 3th5_A 105 FLICFSLVSPASFENVRAKWYPEVRHHC--PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYL 182 (204)
Confidence 99999999999999887 5555443322 37899999999999764321111 00111111112233 789
Q ss_pred EeeecCCCChHHHHHHHHHHh
Q 030429 153 MISCKDSINIDAVIDWLIKHS 173 (177)
Q Consensus 153 ~~Sa~~~~~i~~l~~~l~~~~ 173 (177)
++||++|.|++++|++|.+.+
T Consensus 183 ~vSA~~g~gi~~l~~~l~~~i 203 (204)
T 3th5_A 183 ECSALTQRGLKTVFDEAIRAV 203 (204)
Confidence 999999999999999998764
|
| >2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A | Back alignment and structure |
|---|
Probab=99.96 E-value=2e-28 Score=164.77 Aligned_cols=153 Identities=18% Similarity=0.211 Sum_probs=110.1
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcCCCC---CCCCCccceeEEEEEeCCEEEEEEecCCchhhHH--------hHHHHh
Q 030429 10 KQEMELSLIGLQNAGKTSLVNTIATGGYS---EDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRT--------MWERYC 78 (177)
Q Consensus 10 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~---~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~--------~~~~~~ 78 (177)
+...+|+++|++|||||||++++.+.... .....+.......+..++..+.+|||||+.++.. ....++
T Consensus 2 ~~~~ki~ivG~~g~GKStLl~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~ 81 (172)
T 2gj8_A 2 SHGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWQEI 81 (172)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEETTEEEEEEECCCCSCCSSHHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCcceeeCCCCceeceeeEEEEECCeEEEEEECCCcccchhHHHHHHHHHHHHHH
Confidence 45689999999999999999999976532 1222344445556777888899999999764311 112357
Q ss_pred cCCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccCHHHHHHHhCcccccCCceeEEEeeecC
Q 030429 79 RGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCKD 158 (177)
Q Consensus 79 ~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 158 (177)
+.+|++++|+|++++.++.. ..|+..+.... ..++|+++|+||+|+.+... ........+++++||++
T Consensus 82 ~~ad~~i~v~D~~~~~s~~~-~~~~~~~~~~~-~~~~p~ilv~NK~Dl~~~~~----------~~~~~~~~~~~~~SA~~ 149 (172)
T 2gj8_A 82 EQADRVLFMVDGTTTDAVDP-AEIWPEFIARL-PAKLPITVVRNKADITGETL----------GMSEVNGHALIRLSART 149 (172)
T ss_dssp HTCSEEEEEEETTTCCCCSH-HHHCHHHHHHS-CTTCCEEEEEECHHHHCCCC----------EEEEETTEEEEECCTTT
T ss_pred HhCCEEEEEEECCCCCCHHH-HHHHHHHHHhc-ccCCCEEEEEECccCCcchh----------hhhhccCCceEEEeCCC
Confidence 89999999999999888763 45555554432 24689999999999854311 11112346899999999
Q ss_pred CCChHHHHHHHHHHhh
Q 030429 159 SINIDAVIDWLIKHSK 174 (177)
Q Consensus 159 ~~~i~~l~~~l~~~~~ 174 (177)
|.|++++|++|.+.+.
T Consensus 150 g~gv~~l~~~l~~~~~ 165 (172)
T 2gj8_A 150 GEGVDVLRNHLKQSMG 165 (172)
T ss_dssp CTTHHHHHHHHHHHC-
T ss_pred CCCHHHHHHHHHHHhh
Confidence 9999999999998764
|
| >2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=1.4e-29 Score=173.31 Aligned_cols=159 Identities=20% Similarity=0.187 Sum_probs=111.3
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcCC--CCCCCCCcccee--EEEEEeCC--EEEEEEecCCchh-hHHhHHHHhcCCC
Q 030429 10 KQEMELSLIGLQNAGKTSLVNTIATGG--YSEDMIPTVGFN--MRKVTKGN--VTIKLWDLGGQRR-FRTMWERYCRGVS 82 (177)
Q Consensus 10 ~~~~~i~i~G~~~~GKSsli~~l~~~~--~~~~~~~t~~~~--~~~~~~~~--~~~~~~D~~g~~~-~~~~~~~~~~~~d 82 (177)
...+||+++|.+|||||||+++|++.. +...+. +.+.+ ...+..++ +.+.+|||+|+.. +......+++.+|
T Consensus 4 ~~~~kv~lvG~~~vGKSsL~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~Dt~~~~~~~~~~~~~~~~~~~ 82 (192)
T 2cjw_A 4 MTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDXE-VLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVGD 82 (192)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHHSCCC----G-GGCTTEEEEEEEETTEEEEEEEECCCCC----CTTGGGHHHHCS
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCcCCcCcccc-ccceeEEEEEEEECCeEEEEEEEEeccCcchhhhHHHhhcccCC
Confidence 456899999999999999999998532 333222 23322 23344444 5678999999766 3444556777899
Q ss_pred EEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccC--HHHHHHHhCcccccCCceeEEEeeecCCC
Q 030429 83 AILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALS--KQALVDQLGLESITDREVCCYMISCKDSI 160 (177)
Q Consensus 83 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 160 (177)
++++|||++++.+++....|+..+.......+.|+++|+||+|+.+... .++.. .+. ...++++++|||++|.
T Consensus 83 ~~i~v~dv~~~~s~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~r~v~~~~~~-~~a----~~~~~~~~e~SA~~g~ 157 (192)
T 2cjw_A 83 AYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRXREVSVSEGR-AXA----VVFDXKFIETSAAVQH 157 (192)
T ss_dssp EEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECTTCGGGCCSCHHHHH-HHH----HHTTCEEEECBTTTTB
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCeEEEEEechhhhccccccHHHHH-HHH----HHhCCceEEeccccCC
Confidence 9999999999999999988887765533335789999999999865322 12111 111 0112479999999999
Q ss_pred ChHHHHHHHHHHhh
Q 030429 161 NIDAVIDWLIKHSK 174 (177)
Q Consensus 161 ~i~~l~~~l~~~~~ 174 (177)
|++++|+++.+.+.
T Consensus 158 ~v~~lf~~l~~~~~ 171 (192)
T 2cjw_A 158 NVKELFEGIVRQVR 171 (192)
T ss_dssp SHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH
Confidence 99999999998774
|
| >3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A | Back alignment and structure |
|---|
Probab=99.96 E-value=5.2e-28 Score=165.22 Aligned_cols=163 Identities=18% Similarity=0.162 Sum_probs=110.6
Q ss_pred ccccceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEE-EEEeCCEEEEEEecCC----------chhhHHhHH
Q 030429 7 LFFKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMR-KVTKGNVTIKLWDLGG----------QRRFRTMWE 75 (177)
Q Consensus 7 ~~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~D~~g----------~~~~~~~~~ 75 (177)
......++|+++|++|||||||++++++.... ...++.+.+.. .....+..+.+||||| +..+...+.
T Consensus 18 ~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~~~~~t~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~ 96 (195)
T 3pqc_A 18 YPPPLKGEVAFVGRSNVGKSSLLNALFNRKIA-FVSKTPGKTRSINFYLVNSKYYFVDLPGYGYAKVSKKERMLWKRLVE 96 (195)
T ss_dssp CCCCTTCEEEEEEBTTSSHHHHHHHHHTSCCS-CCCSSCCCCCCEEEEEETTTEEEEECCCBSSSCCCHHHHHHHHHHHH
T ss_pred CCCCCCeEEEEECCCCCCHHHHHHHHHcCccc-cccCCCCCccCeEEEEECCcEEEEECCCCccccCChhhHHHHHHHHH
Confidence 34456789999999999999999999977632 22222221111 1122244688999999 666777666
Q ss_pred HHhcCC---CEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccCHHHHHHHhCcccccCCceeEE
Q 030429 76 RYCRGV---SAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCY 152 (177)
Q Consensus 76 ~~~~~~---d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (177)
.++..+ |++++|+|+++..+.... .+...+.. .+.|+++|+||+|+.+....+...+............+++
T Consensus 97 ~~~~~~~~~~~vi~v~d~~~~~~~~~~--~~~~~~~~---~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (195)
T 3pqc_A 97 DYFKNRWSLQMVFLLVDGRIPPQDSDL--MMVEWMKS---LNIPFTIVLTKMDKVKMSERAKKLEEHRKVFSKYGEYTII 171 (195)
T ss_dssp HHHHHCTTEEEEEEEEETTSCCCHHHH--HHHHHHHH---TTCCEEEEEECGGGSCGGGHHHHHHHHHHHHHSSCCSCEE
T ss_pred HHHhcCcCceEEEEEecCCCCCCHHHH--HHHHHHHH---cCCCEEEEEEChhcCChHHHHHHHHHHHHHHhhcCCCceE
Confidence 666554 999999999876544332 11112121 2689999999999987655444444433222222346899
Q ss_pred EeeecCCCChHHHHHHHHHHhhh
Q 030429 153 MISCKDSINIDAVIDWLIKHSKT 175 (177)
Q Consensus 153 ~~Sa~~~~~i~~l~~~l~~~~~~ 175 (177)
++||++|.|++++|++|.+.+.+
T Consensus 172 ~~Sa~~~~gv~~l~~~l~~~l~~ 194 (195)
T 3pqc_A 172 PTSSVTGEGISELLDLISTLLKE 194 (195)
T ss_dssp ECCTTTCTTHHHHHHHHHHHHC-
T ss_pred EEecCCCCCHHHHHHHHHHHhhc
Confidence 99999999999999999998865
|
| >2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.96 E-value=7.6e-28 Score=159.71 Aligned_cols=149 Identities=17% Similarity=0.205 Sum_probs=106.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCC---CCCCCccceeEEEEEeCCEEEEEEecCCchh-------hHHhHHHHhcCCC
Q 030429 13 MELSLIGLQNAGKTSLVNTIATGGYS---EDMIPTVGFNMRKVTKGNVTIKLWDLGGQRR-------FRTMWERYCRGVS 82 (177)
Q Consensus 13 ~~i~i~G~~~~GKSsli~~l~~~~~~---~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~-------~~~~~~~~~~~~d 82 (177)
.||+++|++|+|||||++++.+..+. .....+.......+..++..+.+|||||+.. +...+..++..+|
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~ 81 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKKRSAVVADVPGVTRDLKEGVVETDRGRFLLVDTGGLWSGDKWEKKIQEKVDRALEDAE 81 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHCCC-----------CCEEEEEEETTEEEEEEECGGGCSSSSCCHHHHHHHHHHTTTCS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCeeeccCCCCceecceEEEEEeCCceEEEEECCCCCCccchHHHHHHHHHHHHHhCC
Confidence 58999999999999999999977643 1222233455556677888999999999876 4555667889999
Q ss_pred EEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccCHHHHHHHhCcccccCCceeEEEeeecCCCCh
Q 030429 83 AILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCKDSINI 162 (177)
Q Consensus 83 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i 162 (177)
++++|+|++++.+.. ..++...... .+.|+++|+||+|+.+.. ++ .+.+ ......+++++||++|.|+
T Consensus 82 ~~i~v~d~~~~~~~~--~~~~~~~~~~---~~~p~ilv~nK~Dl~~~~--~~-~~~~----~~~~~~~~~~~Sa~~~~gv 149 (161)
T 2dyk_A 82 VVLFAVDGRAELTQA--DYEVAEYLRR---KGKPVILVATKVDDPKHE--LY-LGPL----YGLGFGDPIPTSSEHARGL 149 (161)
T ss_dssp EEEEEEESSSCCCHH--HHHHHHHHHH---HTCCEEEEEECCCSGGGG--GG-CGGG----GGGSSCSCEECBTTTTBSH
T ss_pred EEEEEEECCCcccHh--HHHHHHHHHh---cCCCEEEEEECcccccch--Hh-HHHH----HhCCCCCeEEEecccCCCh
Confidence 999999998864433 2334443333 468999999999997652 11 1111 1111126899999999999
Q ss_pred HHHHHHHHHHh
Q 030429 163 DAVIDWLIKHS 173 (177)
Q Consensus 163 ~~l~~~l~~~~ 173 (177)
+++|++|.+.+
T Consensus 150 ~~l~~~l~~~l 160 (161)
T 2dyk_A 150 EELLEAIWERL 160 (161)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHHHHHhC
Confidence 99999998865
|
| >3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=3.5e-28 Score=177.32 Aligned_cols=163 Identities=18% Similarity=0.209 Sum_probs=120.2
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcCCCC---CCCCCccceeEEEEEe-CCEEEEEEecCCchhh-----HHhHHHHhcC
Q 030429 10 KQEMELSLIGLQNAGKTSLVNTIATGGYS---EDMIPTVGFNMRKVTK-GNVTIKLWDLGGQRRF-----RTMWERYCRG 80 (177)
Q Consensus 10 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~---~~~~~t~~~~~~~~~~-~~~~~~~~D~~g~~~~-----~~~~~~~~~~ 80 (177)
+..+||+++|.+|||||||+++++++... ..+.+|.+.....+.. +++.+.+|||||++++ ...+..++++
T Consensus 1 ~~~~KI~lvG~~~vGKSSLi~~l~~~~~~~~~~~~~~Ti~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~ 80 (307)
T 3r7w_A 1 PLGSKLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHSHLRFLGNMTLNLWDCGGQDVFMENYFTKQKDHIFQM 80 (307)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHSCCCTGGGGGCCCCCSEEEEEEEETTTEEEEEEEECCSHHHHHHHHTTTHHHHHTT
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCccccCcCCccceEEEEEEeCCceEEEEEECCCcHHHhhhhhhhHHHHHhcc
Confidence 35689999999999999999999876322 2466788887777764 6799999999999988 5677788899
Q ss_pred CCEEEEEEeCCCCCCHHHHHHHHHHHHcC-CCCCCCcEEEEeeCCCcccccCHH----HHHHHhCcccccCC--ceeEEE
Q 030429 81 VSAILYVVDAADRDSVPIARSELHELLMK-PSLSGIPLLVLGNKIDKSEALSKQ----ALVDQLGLESITDR--EVCCYM 153 (177)
Q Consensus 81 ~d~~i~v~d~~~~~~~~~~~~~~~~~~~~-~~~~~~~~iiv~nK~D~~~~~~~~----~~~~~~~~~~~~~~--~~~~~~ 153 (177)
+|++++|+|++++.+++++..|...+... ...++.|+++|+||+|+.+..... ...+.......... .+++++
T Consensus 81 ad~vi~V~D~t~~~s~~~l~~~~~~l~~l~~~~~~~piilv~NK~Dl~~~~~r~~~~~v~~~~~~~~~~~~g~~~~~~~~ 160 (307)
T 3r7w_A 81 VQVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDAKIFVLLHKMDLVQLDKREELFQIMMKNLSETSSEFGFPNLIGFP 160 (307)
T ss_dssp CSEEEEEEETTCSCHHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHTTTCCSCEEEE
T ss_pred CCEEEEEEECCChhhHHHHHHHHHHHHHHHHhCCCCeEEEEEecccccchhhhhHHHHHHHHHHHHHHHHcCCCCeEEEE
Confidence 99999999999999999886654333221 012479999999999997632222 11111111111111 368999
Q ss_pred eeecCCCChHHHHHHHHHHh
Q 030429 154 ISCKDSINIDAVIDWLIKHS 173 (177)
Q Consensus 154 ~Sa~~~~~i~~l~~~l~~~~ 173 (177)
+||++ .++.++|..+.+.+
T Consensus 161 tSa~~-~~i~e~~~~iv~~l 179 (307)
T 3r7w_A 161 TSIWD-ESLYKAWSQIVCSL 179 (307)
T ss_dssp CCTTS-SHHHHHHHHHHHTT
T ss_pred eeecC-ChHHHHHHHHHHHH
Confidence 99999 88999999888754
|
| >2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.96 E-value=6.1e-29 Score=169.32 Aligned_cols=161 Identities=18% Similarity=0.208 Sum_probs=113.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEeCCEEEEEEecCC-----------chhhHHhHHHHhcC-
Q 030429 13 MELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGG-----------QRRFRTMWERYCRG- 80 (177)
Q Consensus 13 ~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g-----------~~~~~~~~~~~~~~- 80 (177)
+||+++|++|||||||++++.++.+.....++.......+... .+.+||||| ++.+...+..++..
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~t~~~~~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (190)
T 2cxx_A 2 ATIIFAGRSNVGKSTLIYRLTGKKVRRGKRPGVTRKIIEIEWK--NHKIIDMPGFGFMMGLPKEVQERIKDEIVHFIEDN 79 (190)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHSCCCSSSSSTTCTTSCEEEEET--TEEEEECCCBSCCTTSCHHHHHHHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhCcCCccCCCCCccceeEEEecC--CEEEEECCCccccccCCHHHHHHHHHHHHHHHHhh
Confidence 5899999999999999999998887766666555555555444 688999999 67777777777766
Q ss_pred CCEEEEEEeCCCCCCHHHH-HHHHHH--------HHcCCCCCCCcEEEEeeCCCccccc--CHHHHHHHhCcccccCCce
Q 030429 81 VSAILYVVDAADRDSVPIA-RSELHE--------LLMKPSLSGIPLLVLGNKIDKSEAL--SKQALVDQLGLESITDREV 149 (177)
Q Consensus 81 ~d~~i~v~d~~~~~~~~~~-~~~~~~--------~~~~~~~~~~~~iiv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~ 149 (177)
++++++|+++.|..++... ..|... +.......+.|+++|+||+|+.+.. ..+++.+.++... .....
T Consensus 80 ~~~~~~v~~v~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~ 158 (190)
T 2cxx_A 80 AKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELDIPTIVAVNKLDKIKNVQEVINFLAEKFEVPL-SEIDK 158 (190)
T ss_dssp GGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHHTTCCEEEEEECGGGCSCHHHHHHHHHHHHTCCG-GGHHH
T ss_pred hccCCEEEEEEcchhhhhHHHhhhccCccHHHHHHHHHHHhcCCceEEEeehHhccCcHHHHHHHHHHHhhhhh-hccCC
Confidence 6666666666666677766 333221 1111112478999999999997643 2334444444311 00123
Q ss_pred eEEEeeecCCCChHHHHHHHHHHhhhc
Q 030429 150 CCYMISCKDSINIDAVIDWLIKHSKTA 176 (177)
Q Consensus 150 ~~~~~Sa~~~~~i~~l~~~l~~~~~~~ 176 (177)
+++++||++|.|++++|++|.+.+.+.
T Consensus 159 ~~~~~Sa~~~~~v~~l~~~l~~~~~~~ 185 (190)
T 2cxx_A 159 VFIPISAKFGDNIERLKNRIFEVIRER 185 (190)
T ss_dssp HEEECCTTTCTTHHHHHHHHHHHHHHC
T ss_pred cEEEEecCCCCCHHHHHHHHHHhcchh
Confidence 689999999999999999999988754
|
| >3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B* | Back alignment and structure |
|---|
Probab=99.95 E-value=1.5e-28 Score=178.41 Aligned_cols=158 Identities=20% Similarity=0.263 Sum_probs=114.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCC---CCCCccceeEEEEEeCCEEEEEEecCCchhhHH---hHHHHhcCCCEEEEE
Q 030429 14 ELSLIGLQNAGKTSLVNTIATGGYSE---DMIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRT---MWERYCRGVSAILYV 87 (177)
Q Consensus 14 ~i~i~G~~~~GKSsli~~l~~~~~~~---~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~---~~~~~~~~~d~~i~v 87 (177)
||+++|..|||||||++++.++.... ...+|.+.....+. ..+.+++|||+|+++|+. ....++++++++++|
T Consensus 1 KIvllGdsgvGKTSLl~~~~~~~~~~~~~~~~~Tig~~~~~v~-~~v~LqIWDTAGQErf~~~~l~~~~yyr~a~~~IlV 79 (331)
T 3r7w_B 1 MVLLMGVRRCGKSSICKVVFHNMQPLDTLYLESTSNPSLEHFS-TLIDLAVMELPGQLNYFEPSYDSERLFKSVGALVYV 79 (331)
T ss_dssp CEEEECSTTSSTTHHHHHHHSCCCSGGGTTCCCCCSCCCEEEC-SSSCEEEEECCSCSSSCCCSHHHHHHHTTCSEEEEE
T ss_pred CEEEECCCCCCHHHHHHHHHcCCCCCccceecCeeeeeeEEEc-cEEEEEEEECCCchhccchhhhhhhhccCCCEEEEE
Confidence 68999999999999999987554332 25678887777663 458999999999999964 457899999999999
Q ss_pred EeCCCCCCHHHHHHHHHHHHcC--CCCCCCcEEEEeeCCCcccccCH----HHHHHHhCccccc----CCceeEEEeeec
Q 030429 88 VDAADRDSVPIARSELHELLMK--PSLSGIPLLVLGNKIDKSEALSK----QALVDQLGLESIT----DREVCCYMISCK 157 (177)
Q Consensus 88 ~d~~~~~~~~~~~~~~~~~~~~--~~~~~~~~iiv~nK~D~~~~~~~----~~~~~~~~~~~~~----~~~~~~~~~Sa~ 157 (177)
||++++ +.+...||..++.. ...++.|+++++||+|+.+.... +++....+..... ..+++|++|||+
T Consensus 80 ~Ditd~--~~~~~~~l~~~l~~~~~~~~~ipillvgNK~DL~~~~~R~~~~R~V~~~~~~~la~~~~~~~~i~f~eTSAk 157 (331)
T 3r7w_B 80 IDSQDE--YINAITNLAMIIEYAYKVNPSINIEVLIHKVDGLSEDFKVDAQRDIMQRTGEELLELGLDGVQVSFYLTSIF 157 (331)
T ss_dssp CCCSSC--TTHHHHHHHHHHHHHHHHCTTCEEEEECCCCCSSCSHHHHHHHHHHHHHHHHTTSSSSCSCCCEEEECCCSS
T ss_pred EECCch--HHHHHHHHHHHHHHHhhcCCCCcEEEEEECcccCchhhhhhHHHHhhHHHHHHHHhhcccccCceEEEeccC
Confidence 999987 44444454433221 11257999999999999765321 2233322222222 246899999999
Q ss_pred CCCChHHHHHHHHHHhhh
Q 030429 158 DSINIDAVIDWLIKHSKT 175 (177)
Q Consensus 158 ~~~~i~~l~~~l~~~~~~ 175 (177)
+ .+|.+.|..+++.+..
T Consensus 158 d-~nV~eAFs~iv~~li~ 174 (331)
T 3r7w_B 158 D-HSIYEAFSRIVQKLIP 174 (331)
T ss_dssp S-SHHHHHHHHHHTTSST
T ss_pred C-CcHHHHHHHHHHHHHh
Confidence 8 5899999999887643
|
| >3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=3.8e-27 Score=171.86 Aligned_cols=161 Identities=19% Similarity=0.140 Sum_probs=120.7
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHhcCCCCC---CCCCccceeEEEEEeC-CEEEEEEecCCchhh----------HHhH
Q 030429 9 FKQEMELSLIGLQNAGKTSLVNTIATGGYSE---DMIPTVGFNMRKVTKG-NVTIKLWDLGGQRRF----------RTMW 74 (177)
Q Consensus 9 ~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~---~~~~t~~~~~~~~~~~-~~~~~~~D~~g~~~~----------~~~~ 74 (177)
.+..-.|+++|.+|||||||+|+|++..+.. ....|..........+ +.++.+|||||+.++ ....
T Consensus 7 ~~~~g~v~ivG~~nvGKSTLin~l~g~~~~i~s~~~~tT~~~~~~~~~~~~~~~i~lvDTPG~~~~~~~~~l~~~~~~~~ 86 (308)
T 3iev_A 7 HMKVGYVAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNIPNEAQIIFLDTPGIYEPKKSDVLGHSMVEIA 86 (308)
T ss_dssp CCEEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETTTEEEEEEECCCCCCCCTTCHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCCcHHHHHHHHhCCCccccCCCCCceeeEEEEEEecCCCCeEEEEECcCCCccccchhHHHHHHHHH
Confidence 4566789999999999999999999877542 2233444445556677 899999999998443 3555
Q ss_pred HHHhcCCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcc-cccCHHHHHHHhCcccccCCceeEEE
Q 030429 75 ERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKS-EALSKQALVDQLGLESITDREVCCYM 153 (177)
Q Consensus 75 ~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (177)
..++..+|++++|+|++++.+......|+..+.. .+.|+++|+||+|+. +.....+..+.+.... ....++++
T Consensus 87 ~~~l~~aD~il~VvD~~~~~~~~~~~~~~~~l~~----~~~pvilV~NK~Dl~~~~~~~~~~~~~l~~~~--~~~~~i~~ 160 (308)
T 3iev_A 87 KQSLEEADVILFMIDATEGWRPRDEEIYQNFIKP----LNKPVIVVINKIDKIGPAKNVLPLIDEIHKKH--PELTEIVP 160 (308)
T ss_dssp HHHHHHCSEEEEEEETTTBSCHHHHHHHHHHTGG----GCCCEEEEEECGGGSSSGGGGHHHHHHHHHHC--TTCCCEEE
T ss_pred HHHhhcCCEEEEEEeCCCCCCchhHHHHHHHHHh----cCCCEEEEEECccCCCCHHHHHHHHHHHHHhc--cCCCeEEE
Confidence 6678899999999999998888877666666544 368999999999997 4433333333332211 12347999
Q ss_pred eeecCCCChHHHHHHHHHHhhh
Q 030429 154 ISCKDSINIDAVIDWLIKHSKT 175 (177)
Q Consensus 154 ~Sa~~~~~i~~l~~~l~~~~~~ 175 (177)
+||++|.|++++++.|.+.+.+
T Consensus 161 vSA~~g~gv~~L~~~l~~~l~~ 182 (308)
T 3iev_A 161 ISALKGANLDELVKTILKYLPE 182 (308)
T ss_dssp CBTTTTBSHHHHHHHHHHHSCB
T ss_pred EeCCCCCCHHHHHHHHHHhCcc
Confidence 9999999999999999988754
|
| >2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=2e-27 Score=174.81 Aligned_cols=166 Identities=19% Similarity=0.233 Sum_probs=123.1
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEE-EEeCC--EEEEEEecCCchhhHHhHHHHhcCCCEEE
Q 030429 9 FKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRK-VTKGN--VTIKLWDLGGQRRFRTMWERYCRGVSAIL 85 (177)
Q Consensus 9 ~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~-~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~~i 85 (177)
.+..++|+++|.+|+|||||++++.++.+...+.+|.+..... +..++ +.+.+|||||++.+...+..++..+|+++
T Consensus 152 ~~~~~~i~i~G~~~~GKssli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 231 (332)
T 2wkq_A 152 AKELIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFL 231 (332)
T ss_dssp HTTCEEEEEEESTTSSHHHHHHHHHHSCCCCSCCCCSEEEEEEEEEETTEEEEEEEEEECCCGGGTTTGGGGCTTCSEEE
T ss_pred ccceeEEEEECCCCCChHHHHHHHHhCCCCcccCCcccceeEEEEEECCEEEEEEEEeCCCchhhhHHHHHhccCCCEEE
Confidence 3567999999999999999999999888877777766544332 34444 56679999999999988888999999999
Q ss_pred EEEeCCCCCCHHHHH-HHHHHHHcCCCCCCCcEEEEeeCCCcccccCHHHHHHHhCccc---------cc-CCceeEEEe
Q 030429 86 YVVDAADRDSVPIAR-SELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLES---------IT-DREVCCYMI 154 (177)
Q Consensus 86 ~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~---------~~-~~~~~~~~~ 154 (177)
+|+|++++.++.... .|+..+.... .++|+++|+||+|+.+.....+......... .. ....+++++
T Consensus 232 ~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 309 (332)
T 2wkq_A 232 ICFSLVSPASFHHVRAKWYPEVRHHC--PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLEC 309 (332)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHC--TTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEEC
T ss_pred EEEeCCCHHHHHHHHHHHHHHHHhhC--CCCcEEEEEEchhcccccchhhhccccccccccHHHHHHHHHHcCCcEEEEe
Confidence 999999999998886 4555554432 3789999999999865422111111110000 00 112379999
Q ss_pred eecCCCChHHHHHHHHHHhhhc
Q 030429 155 SCKDSINIDAVIDWLIKHSKTA 176 (177)
Q Consensus 155 Sa~~~~~i~~l~~~l~~~~~~~ 176 (177)
||++|.|++++|+.|.+.+.+.
T Consensus 310 Sa~~~~gi~~l~~~l~~~~~~~ 331 (332)
T 2wkq_A 310 SALTQRGLKTVFDEAIRAVLCP 331 (332)
T ss_dssp CTTTCTTHHHHHHHHHHHHHC-
T ss_pred cCCCCcCHHHHHHHHHHHHhcC
Confidence 9999999999999999987654
|
| >4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.7e-27 Score=166.24 Aligned_cols=163 Identities=16% Similarity=0.162 Sum_probs=110.7
Q ss_pred cccceeEEEEEcCCCCCHHHHHHHHhcCCCCCC----CCCccceeEEEEE-eCCEEEEEEecCC----------chhhHH
Q 030429 8 FFKQEMELSLIGLQNAGKTSLVNTIATGGYSED----MIPTVGFNMRKVT-KGNVTIKLWDLGG----------QRRFRT 72 (177)
Q Consensus 8 ~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~----~~~t~~~~~~~~~-~~~~~~~~~D~~g----------~~~~~~ 72 (177)
.....++|+++|.+|||||||++++++...... ...|......... .++..+.+||||| ++.+..
T Consensus 25 ~~~~~~~i~v~G~~~~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~ 104 (223)
T 4dhe_A 25 PPTVQPEIAFAGRSNAGKSTAINVLCNQKRLAFASKTPGRTQHINYFSVGPAAEPVAHLVDLPGYGYAEVPGAAKAHWEQ 104 (223)
T ss_dssp CCCCSCEEEEEESCHHHHHHHHHHHTTCSSSSCTTCCCCSCCCEEEEEESCTTSCSEEEEECCCCCSSCCCSTHHHHHHH
T ss_pred CCCCCCEEEEEcCCCCCHHHHHHHHhCCCcceeecCCCCcccceEEEEecCCCCCcEEEEcCCCCCcccCChhhHHHHHH
Confidence 345678999999999999999999997752111 1223334444444 4568899999999 344555
Q ss_pred hHHHHhcC---CCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccCHHHHHHHhCccccc----
Q 030429 73 MWERYCRG---VSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESIT---- 145 (177)
Q Consensus 73 ~~~~~~~~---~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~---- 145 (177)
....++.. +|++++|+|++++.+. ....++..+ .. .+.|+++|+||+|+.+.....+..+.+......
T Consensus 105 ~~~~~~~~~~~~d~vi~v~d~~~~~~~-~~~~~~~~l-~~---~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~l~~~~~~ 179 (223)
T 4dhe_A 105 LLSSYLQTRPQLCGMILMMDARRPLTE-LDRRMIEWF-AP---TGKPIHSLLTKCDKLTRQESINALRATQKSLDAYRDA 179 (223)
T ss_dssp HHHHHHHHCTTEEEEEEEEETTSCCCH-HHHHHHHHH-GG---GCCCEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCcCcCEEEEEEeCCCCCCH-HHHHHHHHH-Hh---cCCCEEEEEeccccCChhhHHHHHHHHHHHHHhhhhc
Confidence 56566554 7889999999875442 223333333 32 468999999999998754432222222111111
Q ss_pred --CCceeEEEeeecCCCChHHHHHHHHHHhhh
Q 030429 146 --DREVCCYMISCKDSINIDAVIDWLIKHSKT 175 (177)
Q Consensus 146 --~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~ 175 (177)
....+++++||++|.|+++++++|.+.+..
T Consensus 180 ~~~~~~~~~~~SA~~g~gv~~l~~~l~~~~~~ 211 (223)
T 4dhe_A 180 GYAGKLTVQLFSALKRTGLDDAHALIESWLRP 211 (223)
T ss_dssp TCCSCEEEEEEBTTTTBSHHHHHHHHHHHHC-
T ss_pred ccCCCCeEEEeecCCCcCHHHHHHHHHHhcCc
Confidence 245689999999999999999999998754
|
| >1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1 | Back alignment and structure |
|---|
Probab=99.95 E-value=9.4e-27 Score=169.09 Aligned_cols=155 Identities=19% Similarity=0.183 Sum_probs=112.3
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhcCCCCC--C-CCCccceeEEEEEeCCEEEEEEecCCchh--------hHHhHHHHhc
Q 030429 11 QEMELSLIGLQNAGKTSLVNTIATGGYSE--D-MIPTVGFNMRKVTKGNVTIKLWDLGGQRR--------FRTMWERYCR 79 (177)
Q Consensus 11 ~~~~i~i~G~~~~GKSsli~~l~~~~~~~--~-~~~t~~~~~~~~~~~~~~~~~~D~~g~~~--------~~~~~~~~~~ 79 (177)
+..+|+++|.+|+|||||+|++++..+.. . ...|..........++.++.+|||||..+ +......+++
T Consensus 6 ~~g~V~ivG~~nvGKSTLln~l~g~~~~ivs~~~~tTr~~i~~i~~~~~~~l~l~DTpG~~~~~~~l~~~~~~~~~~~l~ 85 (301)
T 1wf3_A 6 YSGFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEGRRQIVFVDTPGLHKPMDALGEFMDQEVYEALA 85 (301)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETTEEEEEEECCCCCCCCSHHHHHHHHHHHHHTS
T ss_pred cCCEEEEECCCCCCHHHHHHHHhCCceeeecCCCCceeEEEEEEEEeCCcEEEEecCccccchhhHHHHHHHHHHHHHHh
Confidence 45679999999999999999999877642 1 22233333334556789999999999765 4555667889
Q ss_pred CCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccC-HHHHHHHhCcccccCCceeEEEeeecC
Q 030429 80 GVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALS-KQALVDQLGLESITDREVCCYMISCKD 158 (177)
Q Consensus 80 ~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 158 (177)
.+|++++|+|++++.+.. ..++...+.... .+.|+++|+||+|+.+... ..+..+.+ ....+++++||++
T Consensus 86 ~ad~il~VvD~~~~~~~~--~~~i~~~l~~~~-~~~p~ilV~NK~Dl~~~~~~~~~~~~~~------~~~~~~~~iSA~~ 156 (301)
T 1wf3_A 86 DVNAVVWVVDLRHPPTPE--DELVARALKPLV-GKVPILLVGNKLDAAKYPEEAMKAYHEL------LPEAEPRMLSALD 156 (301)
T ss_dssp SCSEEEEEEETTSCCCHH--HHHHHHHHGGGT-TTSCEEEEEECGGGCSSHHHHHHHHHHT------STTSEEEECCTTC
T ss_pred cCCEEEEEEECCCCCChH--HHHHHHHHHhhc-CCCCEEEEEECcccCCchHHHHHHHHHh------cCcCcEEEEeCCC
Confidence 999999999998875443 345444333321 3689999999999976433 22333333 2334789999999
Q ss_pred CCChHHHHHHHHHHhh
Q 030429 159 SINIDAVIDWLIKHSK 174 (177)
Q Consensus 159 ~~~i~~l~~~l~~~~~ 174 (177)
|.|++++++.|.+.+.
T Consensus 157 g~gv~~l~~~l~~~l~ 172 (301)
T 1wf3_A 157 ERQVAELKADLLALMP 172 (301)
T ss_dssp HHHHHHHHHHHHTTCC
T ss_pred CCCHHHHHHHHHHhcc
Confidence 9999999999988764
|
| >2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.95 E-value=6.9e-27 Score=159.00 Aligned_cols=151 Identities=23% Similarity=0.257 Sum_probs=113.9
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCC--ccceeEEEEEeCCEEEEEEecCCchhhH------HhHHHHhc--C
Q 030429 11 QEMELSLIGLQNAGKTSLVNTIATGGYSEDMIP--TVGFNMRKVTKGNVTIKLWDLGGQRRFR------TMWERYCR--G 80 (177)
Q Consensus 11 ~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~--t~~~~~~~~~~~~~~~~~~D~~g~~~~~------~~~~~~~~--~ 80 (177)
+.++|+++|++|||||||++++++..+.....+ +.......+..++..+.+|||||+..+. .....++. .
T Consensus 6 ~~~~i~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~ 85 (188)
T 2wjg_A 6 KSYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNGEKFKVVDLPGVYSLTANSIDEIIARDYIINEK 85 (188)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETTEEEEEEECCCCSCCSSSSHHHHHHHHHHHHHC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCccccCCCCeeccceEEEEEeCCcEEEEEECCCcCccccccHHHHHHHHHHhccC
Confidence 568999999999999999999997654333333 3334455567788999999999988763 34455553 5
Q ss_pred CCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccc----CHHHHHHHhCcccccCCceeEEEeee
Q 030429 81 VSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEAL----SKQALVDQLGLESITDREVCCYMISC 156 (177)
Q Consensus 81 ~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~Sa 156 (177)
+|++++|+|.++ ++....|+..+.. .+.|+++|+||+|+.+.. ..+++.+.++ .+++++||
T Consensus 86 ~~~~i~v~d~~~---~~~~~~~~~~~~~----~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~--------~~~~~~Sa 150 (188)
T 2wjg_A 86 PDLVVNIVDATA---LERNLYLTLQLME----MGANLLLALNKMDLAKSLGIEIDVDKLEKILG--------VKVVPLSA 150 (188)
T ss_dssp CSEEEEEEEGGG---HHHHHHHHHHHHT----TTCCEEEEEECHHHHHHTTCCCCHHHHHHHHT--------SCEEECBG
T ss_pred CCEEEEEecchh---HHHHHHHHHHHHh----cCCCEEEEEEhhhccccccchHHHHHHHHHhC--------CCeEEEEe
Confidence 999999999875 6666677766654 378999999999986532 3344444443 36999999
Q ss_pred cCCCChHHHHHHHHHHhhhc
Q 030429 157 KDSINIDAVIDWLIKHSKTA 176 (177)
Q Consensus 157 ~~~~~i~~l~~~l~~~~~~~ 176 (177)
+++.|++++|+++.+.+.+.
T Consensus 151 ~~~~~v~~l~~~i~~~~~~~ 170 (188)
T 2wjg_A 151 AKKMGIEELKKAISIAVKDK 170 (188)
T ss_dssp GGTBSHHHHHHHHHHHHTTC
T ss_pred cCCCCHHHHHHHHHHHHHhc
Confidence 99999999999999987653
|
| >3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.95 E-value=2e-28 Score=174.33 Aligned_cols=163 Identities=13% Similarity=0.163 Sum_probs=112.2
Q ss_pred cccceeEEEEEcCC---------CCCHHHHHHHHhc---CCCCCCCCCcc-ceeEE------------------EEEeCC
Q 030429 8 FFKQEMELSLIGLQ---------NAGKTSLVNTIAT---GGYSEDMIPTV-GFNMR------------------KVTKGN 56 (177)
Q Consensus 8 ~~~~~~~i~i~G~~---------~~GKSsli~~l~~---~~~~~~~~~t~-~~~~~------------------~~~~~~ 56 (177)
.....+||+++|.+ |||||||+++|++ ..+...+.++. +.... .++...
T Consensus 15 ~~~~~~ki~lvG~~~~~~~~~~~~vGKSsLi~~l~~~~~~~~~~~~~~t~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 94 (255)
T 3c5h_A 15 YFQGTYNISVVGLSGTEKEKGQCGIGKSCLCNRFVRPSADEFHLDHTSVLSTSDFGGRVVNNDHFLYWGEVSRSLEDCVE 94 (255)
T ss_dssp SCCSCEEEEEEESCCCTTTTTTCCCSHHHHHHHHHCCSTTTCCSCCCCEECHHHHTSTTTTTCSEEEEEEEC--------
T ss_pred CCCceeEEEEECCCccccccCCCCcCHHHHHHHHHhccCCccccccCCcccccccceeEeecccccccccccccccCCcE
Confidence 45567999999999 9999999999998 44544444443 21110 123456
Q ss_pred EEEEEEe-----------------------cCCchhhHHhHHHHhc---------------------CCCEEEEEEeCCC
Q 030429 57 VTIKLWD-----------------------LGGQRRFRTMWERYCR---------------------GVSAILYVVDAAD 92 (177)
Q Consensus 57 ~~~~~~D-----------------------~~g~~~~~~~~~~~~~---------------------~~d~~i~v~d~~~ 92 (177)
+.+++|| ++|++++...+..++. ++|++++|+|+++
T Consensus 95 ~~l~i~D~~~~~D~~~~~~~~~~~~~~~~~~~g~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vilV~D~t~ 174 (255)
T 3c5h_A 95 CKMHIVEQTEFIDDQTFQPHRSTALQPYIKRAAATKLASAEKLMYFCTDQLGLEQDFEQKQMPDGKLLVDGFLLGIDVSR 174 (255)
T ss_dssp -CEEEEEECCCEETTTCSBTTGGGCCCHHHHHTCSEEECTTCBCCCCGGGTTCGGGSCCCBCGGGEEECCEEEEEEECBC
T ss_pred EEEEEEEccccccccccccccccccccccccchhhhhhhhhhhhhhccccccccccccccccccccccCCEEEEEEECCC
Confidence 7899999 5555555555555555 6999999999999
Q ss_pred C--CCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccCHHHHHHHhCcccccCCceeEEEeeecCCCChHHHHHHHH
Q 030429 93 R--DSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCKDSINIDAVIDWLI 170 (177)
Q Consensus 93 ~--~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~ 170 (177)
+ .+++.+..|+..+.......+.|+++|+||+|+.+....++..+... ....++++++||++|.|++++|++|.
T Consensus 175 ~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~----~~~~~~~~e~SAk~g~gv~elf~~l~ 250 (255)
T 3c5h_A 175 GMNRNFDDQLKFVSNLYNQLAKTKKPIVVVLTKCDEGVERYIRDAHTFAL----SKKNLQVVETSARSNVNVDLAFSTLV 250 (255)
T ss_dssp ----CHHHHHHHHHHHHHHHHHTTCCEEEEEECGGGBCHHHHHHHHHHHH----TSSSCCEEECBTTTTBSHHHHHHHHH
T ss_pred CchhhHHHHHHHHHHHHHHhccCCCCEEEEEEcccccccHHHHHHHHHHH----hcCCCeEEEEECCCCCCHHHHHHHHH
Confidence 8 99999999888776542224689999999999965432222222111 11245799999999999999999999
Q ss_pred HHhh
Q 030429 171 KHSK 174 (177)
Q Consensus 171 ~~~~ 174 (177)
+.+.
T Consensus 251 ~~l~ 254 (255)
T 3c5h_A 251 QLID 254 (255)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 8775
|
| >3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A | Back alignment and structure |
|---|
Probab=99.95 E-value=1.9e-26 Score=164.21 Aligned_cols=150 Identities=20% Similarity=0.231 Sum_probs=112.8
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCC--CccceeEEEEEeCCEEEEEEecCCchhhHH------hHHHHh--c
Q 030429 10 KQEMELSLIGLQNAGKTSLVNTIATGGYSEDMI--PTVGFNMRKVTKGNVTIKLWDLGGQRRFRT------MWERYC--R 79 (177)
Q Consensus 10 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~--~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~------~~~~~~--~ 79 (177)
.+.++|+++|++|||||||+++|++..+..... .|.......+..++..+.+|||||+..+.. ....++ .
T Consensus 3 ~~~~kI~lvG~~nvGKTsL~n~l~g~~~~~~~~pg~tv~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~e~v~~~~~~~~ 82 (258)
T 3a1s_A 3 LHMVKVALAGCPNVGKTSLFNALTGTKQYVANWPGVTVEKKEGVFTYKGYTINLIDLPGTYSLGYSSIDEKIARDYLLKG 82 (258)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETTEEEEEEECCCCSSCCSSSHHHHHHHHHHHHS
T ss_pred CCceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceEEEEEEEEEECCeEEEEEECCCcCccCCCCHHHHHHHHHHhhc
Confidence 457899999999999999999999766543322 344445555667789999999999876643 224444 5
Q ss_pred CCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccc----CHHHHHHHhCcccccCCceeEEEee
Q 030429 80 GVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEAL----SKQALVDQLGLESITDREVCCYMIS 155 (177)
Q Consensus 80 ~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~S 155 (177)
.+|++++|+|+++.+ ....++..+... +.|+++|+||+|+.+.. ..+++.+.++ ++++++|
T Consensus 83 ~~d~ii~V~D~t~~~---~~~~~~~~l~~~----~~pvilv~NK~Dl~~~~~i~~~~~~l~~~lg--------~~vi~~S 147 (258)
T 3a1s_A 83 DADLVILVADSVNPE---QSLYLLLEILEM----EKKVILAMTAIDEAKKTGMKIDRYELQKHLG--------IPVVFTS 147 (258)
T ss_dssp CCSEEEEEEETTSCH---HHHHHHHHHHTT----TCCEEEEEECHHHHHHTTCCBCHHHHHHHHC--------SCEEECC
T ss_pred CCCEEEEEeCCCchh---hHHHHHHHHHhc----CCCEEEEEECcCCCCccchHHHHHHHHHHcC--------CCEEEEE
Confidence 899999999998853 334455555443 78999999999986532 2345555554 3799999
Q ss_pred ecCCCChHHHHHHHHHHhh
Q 030429 156 CKDSINIDAVIDWLIKHSK 174 (177)
Q Consensus 156 a~~~~~i~~l~~~l~~~~~ 174 (177)
|++|.|++++++++.+.+.
T Consensus 148 A~~g~gi~el~~~i~~~~~ 166 (258)
T 3a1s_A 148 SVTGEGLEELKEKIVEYAQ 166 (258)
T ss_dssp TTTCTTHHHHHHHHHHHHH
T ss_pred eeCCcCHHHHHHHHHHHhh
Confidence 9999999999999998765
|
| >2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=2.9e-27 Score=162.53 Aligned_cols=160 Identities=22% Similarity=0.337 Sum_probs=120.5
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCcccee--EEEEEeCC--EEEEEEecCCchhhHHhHHHHhcCCCEEE
Q 030429 10 KQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFN--MRKVTKGN--VTIKLWDLGGQRRFRTMWERYCRGVSAIL 85 (177)
Q Consensus 10 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~--~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~~i 85 (177)
...++|+++|++|||||||++++.+..+...+.++.+.. ...+..++ +.+.+||++|++.+......+++.+++++
T Consensus 3 ~~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i 82 (199)
T 2f9l_A 3 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGAL 82 (199)
T ss_dssp SEEEEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCCCHHHHTTCSEEE
T ss_pred cceEEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHHhcCCEEE
Confidence 346899999999999999999999888777666765533 33455554 67889999999998887888889999999
Q ss_pred EEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccC--HHHHHHHhCcccccCCceeEEEeeecCCCChH
Q 030429 86 YVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALS--KQALVDQLGLESITDREVCCYMISCKDSINID 163 (177)
Q Consensus 86 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 163 (177)
+|+|+++..++.+...|+..+... .....|+++|+||+|+.+... ..+..+.. ....+.++++||+++.|++
T Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l~-----~~~~~~~~d~Sal~~~~i~ 156 (199)
T 2f9l_A 83 LVYDIAKHLTYENVERWLKELRDH-ADSNIVIMLVGNKSDLRHLRAVPTDEARAFA-----EKNNLSFIETSALDSTNVE 156 (199)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHH-SCTTCEEEEEEECTTCGGGCCSCHHHHHHHH-----HHTTCEEEECCTTTCTTHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHh-cCCCCeEEEEEECcccccccCcCHHHHHHHH-----HHcCCeEEEEeCCCCCCHH
Confidence 999999988888877777665432 224689999999999975322 22222211 1123478899999999999
Q ss_pred HHHHHHHHHhhh
Q 030429 164 AVIDWLIKHSKT 175 (177)
Q Consensus 164 ~l~~~l~~~~~~ 175 (177)
++++.|.+.+.+
T Consensus 157 ~l~~~l~~~~~~ 168 (199)
T 2f9l_A 157 EAFKNILTEIYR 168 (199)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999987753
|
| >2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.94 E-value=1.3e-26 Score=176.41 Aligned_cols=161 Identities=16% Similarity=0.120 Sum_probs=115.4
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcCCCC---CCCCCccceeEEEEEeCCEEEEEEecCCc----------hhhHHhHH-
Q 030429 10 KQEMELSLIGLQNAGKTSLVNTIATGGYS---EDMIPTVGFNMRKVTKGNVTIKLWDLGGQ----------RRFRTMWE- 75 (177)
Q Consensus 10 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~---~~~~~t~~~~~~~~~~~~~~~~~~D~~g~----------~~~~~~~~- 75 (177)
...++|+++|.+|||||||+|++++..+. .....|.......+..++..+.+|||||+ +.|.....
T Consensus 173 ~~~~ki~lvG~~nvGKSSLin~l~~~~~~~~~~~~gtT~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~e~~~~~~~~ 252 (436)
T 2hjg_A 173 EEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQEFVIVDTAGMRKKGKVYETTEKYSVLRAL 252 (436)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHTSTTEEEC---------CCEEEEETTEEEEETTHHHHTCBTTBCCCCSHHHHHHHH
T ss_pred ccCcEEEEEcCCCCCHHHHHHHHhCCCceeecCCCCceeeeeEEEEEECCeEEEEEECCCcCcCccccchHHHHHHHHHH
Confidence 35689999999999999999999976642 22233444445566778889999999997 44544333
Q ss_pred HHhcCCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccC--HHHHHHHhCcccccCCceeEEE
Q 030429 76 RYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALS--KQALVDQLGLESITDREVCCYM 153 (177)
Q Consensus 76 ~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 153 (177)
.+++.+|++++|+|++++.+.... .|+..+.. .++|+++|+||+|+.+... .++..+.+..........++++
T Consensus 253 ~~~~~ad~~llv~D~~~~~s~~~~-~~~~~~~~----~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 327 (436)
T 2hjg_A 253 KAIDRSEVVAVVLDGEEGIIEQDK-RIAGYAHE----AGKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQFLDYAPILF 327 (436)
T ss_dssp HHHHHCSEEEEEEETTTCCCHHHH-HHHHHHHH----TTCEEEEEEECGGGSCCCTTHHHHHHHHHHHHCGGGTTSCEEE
T ss_pred HHHHhCCEEEEEEcCCcCCcHHHH-HHHHHHHH----cCCcEEEEEECccCCCcchHHHHHHHHHHHHhcccCCCCCEEE
Confidence 467889999999999998887765 35554443 3789999999999976543 2334333332222334568999
Q ss_pred eeecCCCChHHHHHHHHHHhhh
Q 030429 154 ISCKDSINIDAVIDWLIKHSKT 175 (177)
Q Consensus 154 ~Sa~~~~~i~~l~~~l~~~~~~ 175 (177)
+||++|.|++++|+.+.+.+.+
T Consensus 328 ~SA~tg~~v~~l~~~i~~~~~~ 349 (436)
T 2hjg_A 328 MSALTKKRIHTLMPAIIKASEN 349 (436)
T ss_dssp CCTTTCTTGGGHHHHHHHHHHH
T ss_pred EecccCCCHHHHHHHHHHHHHH
Confidence 9999999999999999887654
|
| >3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=3.8e-26 Score=163.66 Aligned_cols=148 Identities=28% Similarity=0.304 Sum_probs=107.4
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCC--ccceeEEEEEeCCEEEEEEecCCchhhH------HhHHHHhc--C
Q 030429 11 QEMELSLIGLQNAGKTSLVNTIATGGYSEDMIP--TVGFNMRKVTKGNVTIKLWDLGGQRRFR------TMWERYCR--G 80 (177)
Q Consensus 11 ~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~--t~~~~~~~~~~~~~~~~~~D~~g~~~~~------~~~~~~~~--~ 80 (177)
+.++|+++|++|||||||+|+|++........+ |.......+.. +..+.+|||||+.++. .....++. .
T Consensus 2 ~~~kI~lvG~~nvGKSTL~n~L~g~~~~v~~~pg~tv~~~~~~~~~-~~~l~l~DtpG~~~~~~~~~~e~v~~~~~~~~~ 80 (272)
T 3b1v_A 2 SMTEIALIGNPNSGKTSLFNLITGHNQRVGNWPGVTVERKSGLVKK-NKDLEIQDLPGIYSMSPYSPEAKVARDYLLSQR 80 (272)
T ss_dssp -CEEEEEECCTTSSHHHHHHHHHCCCCCCCSSSCCCCSCEEEECTT-CTTEEEEECCCCSCSSCSSHHHHHHHHHHHTTC
T ss_pred CceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCCcEEEEEEEEec-CCeEEEEECCCcCccCCCChHHHHHHHHHhcCC
Confidence 357999999999999999999997653332223 33333333333 6789999999987764 34455554 6
Q ss_pred CCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccc----CHHHHHHHhCcccccCCceeEEEeee
Q 030429 81 VSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEAL----SKQALVDQLGLESITDREVCCYMISC 156 (177)
Q Consensus 81 ~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~Sa 156 (177)
+|++++|+|+++. +....|...+.. .+.|+++|+||+|+.+.. ..+.+.+.++ ++++++||
T Consensus 81 ~d~vi~V~D~t~~---e~~~~~~~~l~~----~~~p~ilv~NK~Dl~~~~~~~~~~~~l~~~lg--------~~vi~~SA 145 (272)
T 3b1v_A 81 ADSILNVVDATNL---ERNLYLTTQLIE----TGIPVTIALNMIDVLDGQGKKINVDKLSYHLG--------VPVVATSA 145 (272)
T ss_dssp CSEEEEEEEGGGH---HHHHHHHHHHHH----TCSCEEEEEECHHHHHHTTCCCCHHHHHHHHT--------SCEEECBT
T ss_pred CCEEEEEecCCch---HhHHHHHHHHHh----cCCCEEEEEEChhhCCcCCcHHHHHHHHHHcC--------CCEEEEEc
Confidence 9999999999874 444455555544 378999999999986432 3344555543 37999999
Q ss_pred cCCCChHHHHHHHHHHhh
Q 030429 157 KDSINIDAVIDWLIKHSK 174 (177)
Q Consensus 157 ~~~~~i~~l~~~l~~~~~ 174 (177)
++|.|++++|++|.+.+.
T Consensus 146 ~~g~gi~el~~~i~~~~~ 163 (272)
T 3b1v_A 146 LKQTGVDQVVKKAAHTTT 163 (272)
T ss_dssp TTTBSHHHHHHHHHHSCT
T ss_pred cCCCCHHHHHHHHHHHHh
Confidence 999999999999998764
|
| >3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=1.4e-26 Score=166.32 Aligned_cols=150 Identities=23% Similarity=0.263 Sum_probs=109.4
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCC--ccceeEEEEEeCCEEEEEEecCCchhhH----------HhHHHH-
Q 030429 11 QEMELSLIGLQNAGKTSLVNTIATGGYSEDMIP--TVGFNMRKVTKGNVTIKLWDLGGQRRFR----------TMWERY- 77 (177)
Q Consensus 11 ~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~--t~~~~~~~~~~~~~~~~~~D~~g~~~~~----------~~~~~~- 77 (177)
+.++|+++|.+|||||||+|+|++..+.....+ |.......+...+..+.+|||||+..+. .....+
T Consensus 2 ~~~~I~lvG~~n~GKSTLin~l~g~~~~v~~~~g~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~e~i~~~~~ 81 (274)
T 3i8s_A 2 KKLTIGLIGNPNSGKTTLFNQLTGSRQRVGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIACHYI 81 (274)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHTTCEEEEECTTSSSEEEEEEEECSSCEEEEEECCCCSCSCC----CCHHHHHHHHHH
T ss_pred CccEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeeEEEEEEEEEeCCCceEEEECcCCCccccccccCCHHHHHHHHHH
Confidence 358999999999999999999997764333222 3444555566778899999999977654 122233
Q ss_pred -hcCCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccc----CHHHHHHHhCcccccCCceeEE
Q 030429 78 -CRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEAL----SKQALVDQLGLESITDREVCCY 152 (177)
Q Consensus 78 -~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~----~~~~~~~~~~~~~~~~~~~~~~ 152 (177)
...+|++++|+|+++.+ ....+...+... ++|+++|+||+|+.+.. ..+.+.+.++ ++++
T Consensus 82 ~~~~~d~ii~VvD~~~~~---~~~~~~~~l~~~----~~p~ivv~NK~Dl~~~~~~~~~~~~l~~~lg--------~~~i 146 (274)
T 3i8s_A 82 LSGDADLLINVVDASNLE---RNLYLTLQLLEL----GIPCIVALNMLDIAEKQNIRIEIDALSARLG--------CPVI 146 (274)
T ss_dssp HHTCCSEEEEEEEGGGHH---HHHHHHHHHHHH----TCCEEEEEECHHHHHHTTEEECHHHHHHHHT--------SCEE
T ss_pred hhcCCCEEEEEecCCChH---HHHHHHHHHHhc----CCCEEEEEECccchhhhhHHHHHHHHHHhcC--------CCEE
Confidence 37899999999998743 333333333332 68999999999986542 3344555554 3799
Q ss_pred EeeecCCCChHHHHHHHHHHhhh
Q 030429 153 MISCKDSINIDAVIDWLIKHSKT 175 (177)
Q Consensus 153 ~~Sa~~~~~i~~l~~~l~~~~~~ 175 (177)
++||++|.|+++++++|.+.+.+
T Consensus 147 ~~SA~~g~gi~el~~~i~~~~~~ 169 (274)
T 3i8s_A 147 PLVSTRGRGIEALKLAIDRYKAN 169 (274)
T ss_dssp ECCCGGGHHHHHHHHHHHTCCCC
T ss_pred EEEcCCCCCHHHHHHHHHHHHhc
Confidence 99999999999999999887653
|
| >3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila} | Back alignment and structure |
|---|
Probab=99.94 E-value=7.5e-26 Score=160.97 Aligned_cols=145 Identities=25% Similarity=0.280 Sum_probs=107.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCC--ccceeEEEEEeCCEEEEEEecCCchhhHH----------hHHHHh--
Q 030429 13 MELSLIGLQNAGKTSLVNTIATGGYSEDMIP--TVGFNMRKVTKGNVTIKLWDLGGQRRFRT----------MWERYC-- 78 (177)
Q Consensus 13 ~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~--t~~~~~~~~~~~~~~~~~~D~~g~~~~~~----------~~~~~~-- 78 (177)
.+|+++|.+|||||||+|+|.+........+ |.......+..++..+.+|||||+..+.. ....++
T Consensus 2 ~kI~lvG~~n~GKSTL~n~L~g~~~~v~~~pg~Tv~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~e~i~~~~~~~ 81 (256)
T 3iby_A 2 THALLIGNPNCGKTTLFNALTNANQRVGNWPGVTVEKKTGEFLLGEHLIEITDLPGVYSLVANAEGISQDEQIAAQSVID 81 (256)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTSEEEEECTTSSSEEEEEEEEETTEEEEEEECCCCSSCC------CHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCccCCCCceEEEEEEEEEECCeEEEEEeCCCcccccccccCCCHHHHHHHHHHhh
Confidence 3799999999999999999997754333223 44455556777889999999999876643 344566
Q ss_pred cCCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccc----CHHHHHHHhCcccccCCceeEEEe
Q 030429 79 RGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEAL----SKQALVDQLGLESITDREVCCYMI 154 (177)
Q Consensus 79 ~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~ 154 (177)
..+|++++|+|+++.+. ...+...+.. .+.|+++|+||+|+.+.. ....+.+.++ ++++++
T Consensus 82 ~~~d~vi~VvDas~~~~---~~~l~~~l~~----~~~pvilv~NK~Dl~~~~~~~~~~~~l~~~lg--------~~vi~~ 146 (256)
T 3iby_A 82 LEYDCIINVIDACHLER---HLYLTSQLFE----LGKPVVVALNMMDIAEHRGISIDTEKLESLLG--------CSVIPI 146 (256)
T ss_dssp SCCSEEEEEEEGGGHHH---HHHHHHHHTT----SCSCEEEEEECHHHHHHTTCEECHHHHHHHHC--------SCEEEC
T ss_pred CCCCEEEEEeeCCCchh---HHHHHHHHHH----cCCCEEEEEEChhcCCcCCcHHHHHHHHHHcC--------CCEEEE
Confidence 88999999999988433 2333333322 378999999999986542 2344555553 379999
Q ss_pred eecCCCChHHHHHHHHHH
Q 030429 155 SCKDSINIDAVIDWLIKH 172 (177)
Q Consensus 155 Sa~~~~~i~~l~~~l~~~ 172 (177)
||++|.|+++++++|.+.
T Consensus 147 SA~~g~gi~el~~~i~~~ 164 (256)
T 3iby_A 147 QAHKNIGIPALQQSLLHC 164 (256)
T ss_dssp BGGGTBSHHHHHHHHHTC
T ss_pred ECCCCCCHHHHHHHHHhh
Confidence 999999999999999876
|
| >3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=5e-26 Score=174.01 Aligned_cols=157 Identities=18% Similarity=0.139 Sum_probs=98.9
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHhcCCC---CCCCCCccceeEEEEEeCCEEEEEEecCCchhhHHhH--------HHH
Q 030429 9 FKQEMELSLIGLQNAGKTSLVNTIATGGY---SEDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTMW--------ERY 77 (177)
Q Consensus 9 ~~~~~~i~i~G~~~~GKSsli~~l~~~~~---~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~--------~~~ 77 (177)
.++.++|+++|.+|+|||||+|+|++... ......|.......+..+++.+.+|||||+.++...+ ..+
T Consensus 230 ~r~~~kV~ivG~~nvGKSSLln~L~~~~~a~vs~~~gtT~d~~~~~i~~~g~~l~liDT~G~~~~~~~ve~~gi~~~~~~ 309 (476)
T 3gee_A 230 VSEGVSTVIAGKPNAGKSTLLNTLLGQERAIVSHMPGTTRDYIEECFIHDKTMFRLTDTAGLREAGEEIEHEGIRRSRMK 309 (476)
T ss_dssp HHHCEEEEEECCTTSSHHHHHHHCC------------------CEEEEETTEEEEEEC--------------------CC
T ss_pred hcCCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECCeEEEEEECCCCCcchhHHHHHHHHHHHhh
Confidence 34678999999999999999999997642 1222234445556677889999999999987766443 235
Q ss_pred hcCCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccCHHHHHHHhCcccccCCceeEEEeeec
Q 030429 78 CRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCK 157 (177)
Q Consensus 78 ~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 157 (177)
+..+|++++|+|++++.++.....+.. +.... .++|+++|+||+|+.+...... +.+... ...+++++||+
T Consensus 310 ~~~aD~vl~VvD~s~~~s~~~~~~~~~-~l~~l--~~~piIvV~NK~Dl~~~~~~~~--~~l~~~----~~~~~i~vSAk 380 (476)
T 3gee_A 310 MAEADLILYLLDLGTERLDDELTEIRE-LKAAH--PAAKFLTVANKLDRAANADALI--RAIADG----TGTEVIGISAL 380 (476)
T ss_dssp CSSCSEEEEEEETTTCSSGGGHHHHHH-HHHHC--TTSEEEEEEECTTSCTTTHHHH--HHHHHH----HTSCEEECBTT
T ss_pred cccCCEEEEEEECCCCcchhhhHHHHH-HHHhc--CCCCEEEEEECcCCCCccchhH--HHHHhc----CCCceEEEEEC
Confidence 788999999999999988764322222 22221 2689999999999976543321 111111 01369999999
Q ss_pred CCCChHHHHHHHHHHhh
Q 030429 158 DSINIDAVIDWLIKHSK 174 (177)
Q Consensus 158 ~~~~i~~l~~~l~~~~~ 174 (177)
+|.|+++++++|.+.+.
T Consensus 381 tg~GI~eL~~~i~~~~~ 397 (476)
T 3gee_A 381 NGDGIDTLKQHMGDLVK 397 (476)
T ss_dssp TTBSHHHHHHHHTHHHH
T ss_pred CCCCHHHHHHHHHHHHh
Confidence 99999999999998875
|
| >3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.93 E-value=2.2e-25 Score=160.01 Aligned_cols=150 Identities=17% Similarity=0.143 Sum_probs=113.0
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCC--ccceeEEEEEeCCEEEEEEecCCchhhHH------hHHHHh--cCC
Q 030429 12 EMELSLIGLQNAGKTSLVNTIATGGYSEDMIP--TVGFNMRKVTKGNVTIKLWDLGGQRRFRT------MWERYC--RGV 81 (177)
Q Consensus 12 ~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~--t~~~~~~~~~~~~~~~~~~D~~g~~~~~~------~~~~~~--~~~ 81 (177)
.++|+++|++|||||||++++++..+.....+ +.......+..++..+.+|||||+..+.. ....++ .++
T Consensus 3 ~~~i~lvG~~g~GKTTL~n~l~g~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~ 82 (271)
T 3k53_A 3 LKTVALVGNPNVGKTTIFNALTGLRQHVGNWPGVTVEKKEGIMEYREKEFLVVDLPGIYSLTAHSIDELIARNFILDGNA 82 (271)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHTTCEEEEECTTSSCEEEEEEEEETTEEEEEEECCCCSCCCSSCHHHHHHHHHHHTTCC
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeEEEeeEEEEEECCceEEEEeCCCccccccCCHHHHHHHHhhhccCC
Confidence 47999999999999999999997765433333 33444555677888999999999876654 444555 689
Q ss_pred CEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccc----CHHHHHHHhCcccccCCceeEEEeeec
Q 030429 82 SAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEAL----SKQALVDQLGLESITDREVCCYMISCK 157 (177)
Q Consensus 82 d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 157 (177)
|++++|+|+++. .....++..+... ...|+++|+||+|+.+.. ....+.+.++ ++++++||+
T Consensus 83 d~vi~v~D~~~~---~~~~~~~~~~~~~---~~~p~ilv~NK~Dl~~~~~~~~~~~~l~~~lg--------~~~~~~Sa~ 148 (271)
T 3k53_A 83 DVIVDIVDSTCL---MRNLFLTLELFEM---EVKNIILVLNKFDLLKKKGAKIDIKKMRKELG--------VPVIPTNAK 148 (271)
T ss_dssp SEEEEEEEGGGH---HHHHHHHHHHHHT---TCCSEEEEEECHHHHHHHTCCCCHHHHHHHHS--------SCEEECBGG
T ss_pred cEEEEEecCCcc---hhhHHHHHHHHhc---CCCCEEEEEEChhcCcccccHHHHHHHHHHcC--------CcEEEEEeC
Confidence 999999999873 4455556666554 238999999999975422 2345555554 379999999
Q ss_pred CCCChHHHHHHHHHHhhh
Q 030429 158 DSINIDAVIDWLIKHSKT 175 (177)
Q Consensus 158 ~~~~i~~l~~~l~~~~~~ 175 (177)
+|.|++++++.+.+.+.+
T Consensus 149 ~g~gi~~l~~~i~~~~~~ 166 (271)
T 3k53_A 149 KGEGVEELKRMIALMAEG 166 (271)
T ss_dssp GTBTHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHhc
Confidence 999999999999988754
|
| >3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum} | Back alignment and structure |
|---|
Probab=99.93 E-value=4.2e-26 Score=177.57 Aligned_cols=159 Identities=21% Similarity=0.308 Sum_probs=110.9
Q ss_pred cccceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEE------------eCCEEEEEEecCCchhhHHhHH
Q 030429 8 FFKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVT------------KGNVTIKLWDLGGQRRFRTMWE 75 (177)
Q Consensus 8 ~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~------------~~~~~~~~~D~~g~~~~~~~~~ 75 (177)
...+.+||+++|.+|||||||++++.++.+.....+|.+....... ...+.+.+||+||++.+.....
T Consensus 37 ~~~~~~kV~lvG~~~vGKSSLl~~l~~~~~~~~~~~t~g~~~~~~~~~~~~~v~~~~~~~~~~~~i~Dt~G~e~~~~~~~ 116 (535)
T 3dpu_A 37 VHLQEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECLFHFWDFGGQEIMHASHQ 116 (535)
T ss_dssp BCCCEEEEEEESSSCSSHHHHHHHHHC-----------CCCEEEEEGGGSGGGTTCSTTTTCEEEEECCCSCCTTTTTCH
T ss_pred ccccceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEeccccccceeecCCCceEEEEEEECCcHHHHHHHHH
Confidence 3567799999999999999999999998888777788877666431 2258999999999999998888
Q ss_pred HHhcCCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccC--HHHHHHHhCcccccCCceeEEE
Q 030429 76 RYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALS--KQALVDQLGLESITDREVCCYM 153 (177)
Q Consensus 76 ~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 153 (177)
.++..+|++++|+|+++. +....|+..+.... .+.|+++|+||+|+.+... .++..+.... .+.++++
T Consensus 117 ~~l~~~d~ii~V~D~s~~---~~~~~~~~~l~~~~--~~~pvilV~NK~Dl~~~~~v~~~~~~~~~~~-----~~~~~~~ 186 (535)
T 3dpu_A 117 FFMTRSSVYMLLLDSRTD---SNKHYWLRHIEKYG--GKSPVIVVMNKIDENPSYNIEQKKINERFPA-----IENRFHR 186 (535)
T ss_dssp HHHHSSEEEEEEECGGGG---GGHHHHHHHHHHHS--SSCCEEEEECCTTTCTTCCCCHHHHHHHCGG-----GTTCEEE
T ss_pred HHccCCcEEEEEEeCCCc---hhHHHHHHHHHHhC--CCCCEEEEEECCCcccccccCHHHHHHHHHh-----cCCceEE
Confidence 899999999999999764 45556666665442 3689999999999976433 3333333222 1236999
Q ss_pred eeecCCCChHHHHHHHHHHhhhc
Q 030429 154 ISCKDSINIDAVIDWLIKHSKTA 176 (177)
Q Consensus 154 ~Sa~~~~~i~~l~~~l~~~~~~~ 176 (177)
+||++|.|++++++.|.+.+.+.
T Consensus 187 vSA~~g~gi~eL~~~l~~~~~~~ 209 (535)
T 3dpu_A 187 ISCKNGDGVESIAKSLKSAVLHP 209 (535)
T ss_dssp CCC-----CTTHHHHHHHHHTCT
T ss_pred EecCcccCHHHHHHHHHHHHhcc
Confidence 99999999999999999987653
|
| >1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8 | Back alignment and structure |
|---|
Probab=99.93 E-value=6.9e-26 Score=166.78 Aligned_cols=161 Identities=19% Similarity=0.225 Sum_probs=117.9
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcCCCC--CCCCCccceeEEEEEeCC-EEEEEEecCCchh----hHHhHHHH---hc
Q 030429 10 KQEMELSLIGLQNAGKTSLVNTIATGGYS--EDMIPTVGFNMRKVTKGN-VTIKLWDLGGQRR----FRTMWERY---CR 79 (177)
Q Consensus 10 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~--~~~~~t~~~~~~~~~~~~-~~~~~~D~~g~~~----~~~~~~~~---~~ 79 (177)
+.-.+|+++|.+|||||||++++++.... .....|.......+..++ ..+.+|||||... +..+...+ +.
T Consensus 156 k~la~V~lvG~~nvGKSTLln~L~~~~~~i~~~~ftTl~p~~g~v~~~~~~~~~l~DtPG~i~~a~~~~~l~~~fl~~i~ 235 (342)
T 1lnz_A 156 KVLADVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGMVETDDGRSFVMADLPGLIEGAHQGVGLGHQFLRHIE 235 (342)
T ss_dssp ECCCCEEEESSTTSSHHHHHHHSEEECCEESSTTSSCCCCCEEEEECSSSCEEEEEEHHHHHHHTTCTTTTHHHHHHHHH
T ss_pred hhcCeeeeeCCCCCCHHHHHHHHHcCCCccccCCccccCceEEEEEeCCCceEEEecCCCCcccccccchhHHHHHHHHH
Confidence 33457999999999999999999976532 222345555666666665 8999999999643 22232333 44
Q ss_pred CCCEEEEEEeCCC---CCCHHHHHHHHHHHHcCCC-CCCCcEEEEeeCCCcccccC-HHHHHHHhCcccccCCceeEEEe
Q 030429 80 GVSAILYVVDAAD---RDSVPIARSELHELLMKPS-LSGIPLLVLGNKIDKSEALS-KQALVDQLGLESITDREVCCYMI 154 (177)
Q Consensus 80 ~~d~~i~v~d~~~---~~~~~~~~~~~~~~~~~~~-~~~~~~iiv~nK~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 154 (177)
.+|++++|+|+++ +.+++....|+..+..... ...+|+++|+||+|+.+..+ .+++.+.+... .+++++
T Consensus 236 ~~d~ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~~~l~~~p~ilV~NK~Dl~~~~e~~~~l~~~l~~~------~~v~~i 309 (342)
T 1lnz_A 236 RTRVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMPEAAENLEAFKEKLTDD------YPVFPI 309 (342)
T ss_dssp HCCEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTSTTHHHHHHHHHHHCCSC------CCBCCC
T ss_pred hccEEEEEEECCcccccChHHHHHHHHHHHHHhhhhhcCCCEEEEEECccCCCCHHHHHHHHHHhhcC------CCEEEE
Confidence 5999999999998 7888888888888766532 34789999999999976432 23333333211 468999
Q ss_pred eecCCCChHHHHHHHHHHhhhc
Q 030429 155 SCKDSINIDAVIDWLIKHSKTA 176 (177)
Q Consensus 155 Sa~~~~~i~~l~~~l~~~~~~~ 176 (177)
||+++.|+++++++|.+.+.+.
T Consensus 310 SA~tg~gi~eL~~~l~~~l~~~ 331 (342)
T 1lnz_A 310 SAVTREGLRELLFEVANQLENT 331 (342)
T ss_dssp SSCCSSTTHHHHHHHHHHHTSC
T ss_pred ECCCCcCHHHHHHHHHHHHhhC
Confidence 9999999999999999988754
|
| >3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=4.1e-25 Score=161.15 Aligned_cols=136 Identities=20% Similarity=0.302 Sum_probs=108.7
Q ss_pred CCCccceeEEEEEeCCEEEEEEecCCchhhHHhHHHHhcCCCEEEEEEeCC----------CCCCHHHHHHHHHHHHcCC
Q 030429 41 MIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAA----------DRDSVPIARSELHELLMKP 110 (177)
Q Consensus 41 ~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~----------~~~~~~~~~~~~~~~~~~~ 110 (177)
..+|.|+....+..+++.+++||++|+++++..|..++++++++++|+|++ +..++.+...|+..+....
T Consensus 151 r~~TiGi~~~~~~~~~v~l~iwDtgGQe~~R~~w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~~~~~~i~~~~ 230 (327)
T 3ohm_A 151 RVPTTGIIEYPFDLQSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYP 230 (327)
T ss_dssp CCCCCSEEEEEEEETTEEEEEEEECCSHHHHTTGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTSG
T ss_pred cCceeeEEEEEEEeeceeeEEEEcCCchhHHHHHHHHhCCCCEEEEEEECccccccccccccHhHHHHHHHHHHHHhhhh
Confidence 456788888888899999999999999999999999999999999999665 5677888889999988776
Q ss_pred CCCCCcEEEEeeCCCcccc------------------cCHHHHHHHh-----CcccccCCceeEEEeeecCCCChHHHHH
Q 030429 111 SLSGIPLLVLGNKIDKSEA------------------LSKQALVDQL-----GLESITDREVCCYMISCKDSINIDAVID 167 (177)
Q Consensus 111 ~~~~~~~iiv~nK~D~~~~------------------~~~~~~~~~~-----~~~~~~~~~~~~~~~Sa~~~~~i~~l~~ 167 (177)
...+.|+++++||+|+.+. ...++..+.+ .......+.+.+++|||+++.||+++|+
T Consensus 231 ~~~~~~iiL~~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~e~a~~fi~~~F~~~~~~~~~~i~~~~TsA~d~~nV~~vF~ 310 (327)
T 3ohm_A 231 WFQNSSVILFLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTCATDTENIRFVFA 310 (327)
T ss_dssp GGTTCEEEEEEECHHHHHHHTTTSCGGGTCTTCCSCSSCHHHHHHHHHHHHHSSCTTTTSCEEEEECCTTCHHHHHHHHH
T ss_pred ccCCceEEEEEECchhhhhhhccchHhhhchhccCCCCCHHHHHHHHHHHHHhhcccccCCcEEEEEEeecCHHHHHHHH
Confidence 5568999999999998652 2333333321 1111233567788999999999999999
Q ss_pred HHHHHhhhc
Q 030429 168 WLIKHSKTA 176 (177)
Q Consensus 168 ~l~~~~~~~ 176 (177)
.+.+.+.+.
T Consensus 311 ~v~~~Il~~ 319 (327)
T 3ohm_A 311 AVKDTILQL 319 (327)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHH
Confidence 999987653
|
| >1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B* | Back alignment and structure |
|---|
Probab=99.93 E-value=7.1e-26 Score=154.69 Aligned_cols=158 Identities=22% Similarity=0.346 Sum_probs=120.9
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeE--EEEEeCC--EEEEEEecCCchhhHHhHHHHhcCCCEEE
Q 030429 10 KQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNM--RKVTKGN--VTIKLWDLGGQRRFRTMWERYCRGVSAIL 85 (177)
Q Consensus 10 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~--~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~~i 85 (177)
...++|+++|++|||||||++++.+..+...+.+|.+... ..+..++ +.+.+||++|.+++...+..+++.+++++
T Consensus 27 ~~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i 106 (191)
T 1oix_A 27 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRGAVGAL 106 (191)
T ss_dssp SEEEEEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEEEEEEEEECSCCSSSCCCHHHHTTCCEEE
T ss_pred CcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEECCCCcchhhhhHHHhhcCCEEE
Confidence 4568999999999999999999998888777777776543 3455555 55678999999988888888889999999
Q ss_pred EEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccC--HHHHHHHhCcccccCCceeEEEeeecCCCChH
Q 030429 86 YVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALS--KQALVDQLGLESITDREVCCYMISCKDSINID 163 (177)
Q Consensus 86 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 163 (177)
+|+|.++..+++++..|+..+... .....|+++++||+|+.+... .....+.. ....+.++++|++++.|++
T Consensus 107 ~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l~-----~~~~~~~ld~Sald~~~v~ 180 (191)
T 1oix_A 107 LVYDIAKHLTYENVERWLKELRDH-ADSNIVIMLVGNKSDLRHLRAVPTDEARAFA-----EKNGLSFIETSALDSTNVE 180 (191)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHH-SCTTCEEEEEEECGGGGGGCCSCHHHHHHHH-----HHTTCEEEECCTTTCTTHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHh-cCCCCcEEEEEECcccccccccCHHHHHHHH-----HHcCCEEEEEeCCCCCCHH
Confidence 999999888888777777655432 124689999999999875322 22222111 1123478899999999999
Q ss_pred HHHHHHHHHh
Q 030429 164 AVIDWLIKHS 173 (177)
Q Consensus 164 ~l~~~l~~~~ 173 (177)
++++.|.+.+
T Consensus 181 ~l~~~l~~~i 190 (191)
T 1oix_A 181 AAFQTILTEI 190 (191)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 9999998765
|
| >4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=1.7e-25 Score=171.10 Aligned_cols=162 Identities=16% Similarity=0.134 Sum_probs=114.3
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHhcCCC---CCCCCCccceeEEEEEeCCEEEEEEecCC----------chhhHHhHH
Q 030429 9 FKQEMELSLIGLQNAGKTSLVNTIATGGY---SEDMIPTVGFNMRKVTKGNVTIKLWDLGG----------QRRFRTMWE 75 (177)
Q Consensus 9 ~~~~~~i~i~G~~~~GKSsli~~l~~~~~---~~~~~~t~~~~~~~~~~~~~~~~~~D~~g----------~~~~~~~~~ 75 (177)
....++|+++|.+|+|||||++++.+... ......|.......+..++..+.+||||| ++.+.....
T Consensus 192 ~~~~~ki~ivG~~~vGKSslin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~e~~~~~~~ 271 (456)
T 4dcu_A 192 NEEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQEFVIVDTAGMRKKGKVYETTEKYSVLRA 271 (456)
T ss_dssp CTTCEEEEEECSTTSSHHHHHHHHHTSTTEEECC------CTTSEEEEETTEEEEETTGGGTTTBTTBCCCCSHHHHHHH
T ss_pred ccccceeEEecCCCCCHHHHHHHHhCCCccccCCCCCeEEEEEEEEEEECCceEEEEECCCCCcCcccchHHHHHHHHHH
Confidence 35679999999999999999999996542 22223344444556777888999999999 677766544
Q ss_pred -HHhcCCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccC--HHHHHHHhCcccccCCceeEE
Q 030429 76 -RYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALS--KQALVDQLGLESITDREVCCY 152 (177)
Q Consensus 76 -~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 152 (177)
.+++.+|++++|+|+++... +....++..+.. .++|+++|+||+|+.+... .++..+.+.........++++
T Consensus 272 ~~~~~~ad~~llviD~~~~~~-~~~~~~~~~~~~----~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 346 (456)
T 4dcu_A 272 LKAIDRSEVVAVVLDGEEGII-EQDKRIAGYAHE----AGKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQFLDYAPIL 346 (456)
T ss_dssp HHHHHHCSEEEEEEETTTCCC-HHHHHHHHHHHH----TTCEEEEEEECGGGSCCCSSHHHHHHHHHHHHCGGGTTSCEE
T ss_pred HHHHhhCCEEEEEEeCCCCcC-HHHHHHHHHHHH----cCCCEEEEEEChhcCCCchHHHHHHHHHHHHhcccCCCCCEE
Confidence 37788999999999987543 222333333333 3689999999999976432 234444433322223456899
Q ss_pred EeeecCCCChHHHHHHHHHHhhh
Q 030429 153 MISCKDSINIDAVIDWLIKHSKT 175 (177)
Q Consensus 153 ~~Sa~~~~~i~~l~~~l~~~~~~ 175 (177)
++||++|.|++++|+.+.+.+.+
T Consensus 347 ~~SA~~g~gv~~l~~~i~~~~~~ 369 (456)
T 4dcu_A 347 FMSALTKKRIHTLMPAIIKASEN 369 (456)
T ss_dssp ECCTTTCTTGGGHHHHHHHHHHH
T ss_pred EEcCCCCcCHHHHHHHHHHHHHH
Confidence 99999999999999999987754
|
| >1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ... | Back alignment and structure |
|---|
Probab=99.93 E-value=1.6e-25 Score=165.34 Aligned_cols=134 Identities=20% Similarity=0.302 Sum_probs=106.5
Q ss_pred CCccceeEEEEEeCCEEEEEEecCCchhhHHhHHHHhcCCCEEEEEEeCCC----------CCCHHHHHHHHHHHHcCCC
Q 030429 42 IPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAAD----------RDSVPIARSELHELLMKPS 111 (177)
Q Consensus 42 ~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~~~~~~~~~~~~~~~~~~ 111 (177)
.+|.++....+..+++.+++||++|+++++..|..++++++++|+|+|+++ ..++.+...|+..+.....
T Consensus 178 ~~T~Gi~~~~~~~~~~~l~iwDt~GQe~~r~~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~i~~~~~ 257 (353)
T 1cip_A 178 VKTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKW 257 (353)
T ss_dssp CCCCSEEEEEEEETTEEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHHHHHTCGG
T ss_pred CceeceEEEEEeeCCeeEEEEeCCCchhhhHHHHHHHhcCCEEEEEEECccccccccccchhhhHHHHHHHHHHHHcCcc
Confidence 356777777788889999999999999999999999999999999999999 4568899999999887655
Q ss_pred CCCCcEEEEeeCCCcccc-----------------cCHHHHHHHhC-----cccc-cCCceeEEEeeecCCCChHHHHHH
Q 030429 112 LSGIPLLVLGNKIDKSEA-----------------LSKQALVDQLG-----LESI-TDREVCCYMISCKDSINIDAVIDW 168 (177)
Q Consensus 112 ~~~~~~iiv~nK~D~~~~-----------------~~~~~~~~~~~-----~~~~-~~~~~~~~~~Sa~~~~~i~~l~~~ 168 (177)
..+.|+++++||+|+.+. ...++..+.+. .... ..+.+.+++|||+++.||+++|++
T Consensus 258 ~~~~piiLv~NK~DL~~~ki~~~~l~~~fp~~~g~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~etSA~~~~nV~~vF~~ 337 (353)
T 1cip_A 258 FTDTSIILFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDA 337 (353)
T ss_dssp GTTSEEEEEEECHHHHHHHHTTSCGGGTCTTCCSCSCHHHHHHHHHHHHHTTCSCTTTCCEEEEECCTTCHHHHHHHHHH
T ss_pred ccCCcEEEEEECcCchhhhccccchhhcccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEECcCchhHHHHHHH
Confidence 567999999999998532 22333333221 1100 135678999999999999999999
Q ss_pred HHHHhhh
Q 030429 169 LIKHSKT 175 (177)
Q Consensus 169 l~~~~~~ 175 (177)
+.+.+.+
T Consensus 338 v~~~i~~ 344 (353)
T 1cip_A 338 VTDVIIK 344 (353)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9988764
|
| >3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=6.9e-25 Score=165.38 Aligned_cols=163 Identities=20% Similarity=0.186 Sum_probs=116.2
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCC---cc----------ce---------eEEEEEeCCEEEEEEecCC
Q 030429 9 FKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIP---TV----------GF---------NMRKVTKGNVTIKLWDLGG 66 (177)
Q Consensus 9 ~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~---t~----------~~---------~~~~~~~~~~~~~~~D~~g 66 (177)
.+..++|+++|++++|||||+++|++......... +. .. ...........+.+|||||
T Consensus 5 ~~~~~~I~vvG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDtPG 84 (403)
T 3sjy_A 5 VQPEVNIGVVGHVDHGKTTLVQAITGIWTSKKLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRRISFIDAPG 84 (403)
T ss_dssp CCCCCEEEEECSTTSSHHHHHHHHHSCCCCSSSEEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEEEEEEEEECCC
T ss_pred cCCCcEEEEECCCCCCHHHHHHHHhCcccccccCccccceeeccccccccceecccccccccccccccccceEEEEECCC
Confidence 45679999999999999999999986433221100 00 00 0000011227899999999
Q ss_pred chhhHHhHHHHhcCCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccCHHHHHHHhCc--ccc
Q 030429 67 QRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGL--ESI 144 (177)
Q Consensus 67 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~--~~~ 144 (177)
+++|...+..++..+|++++|+|+++..++.....++..+... ...|+++|+||+|+.+.....+..+.+.. ...
T Consensus 85 h~~~~~~~~~~~~~~D~~ilVvda~~~~~~~qt~~~~~~~~~~---~~~~iivviNK~Dl~~~~~~~~~~~~i~~~l~~~ 161 (403)
T 3sjy_A 85 HEVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGII---GVKNLIIVQNKVDVVSKEEALSQYRQIKQFTKGT 161 (403)
T ss_dssp CGGGHHHHHHHHTTCSEEEEEEETTSCSSCHHHHHHHHHHHHH---TCCCEEEEEECGGGSCHHHHHHHHHHHHHHHTTS
T ss_pred cHHHHHHHHHHHhhCCEEEEEEECCCCCCcHHHHHHHHHHHHc---CCCCEEEEEECccccchHHHHHHHHHHHHHHHhh
Confidence 9999999999999999999999999987777777777655433 23589999999999875433332222211 112
Q ss_pred cCCceeEEEeeecCCCChHHHHHHHHHHhh
Q 030429 145 TDREVCCYMISCKDSINIDAVIDWLIKHSK 174 (177)
Q Consensus 145 ~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~ 174 (177)
.....+++++||++|.|+++|+++|.+.+.
T Consensus 162 ~~~~~~ii~vSA~~g~gi~~L~~~l~~~l~ 191 (403)
T 3sjy_A 162 WAENVPIIPVSALHKINIDSLIEGIEEYIK 191 (403)
T ss_dssp TTTTCCEEECBTTTTBSHHHHHHHHHHHSC
T ss_pred CCCCCEEEEEECCCCcChHHHHHHHHHhCC
Confidence 234568999999999999999999998664
|
| >1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B* | Back alignment and structure |
|---|
Probab=99.93 E-value=3.9e-25 Score=169.26 Aligned_cols=152 Identities=17% Similarity=0.253 Sum_probs=114.1
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcCCC---CCCCCCccceeEEEEEeCCEEEEEEecCCch-hhH--------HhHHHH
Q 030429 10 KQEMELSLIGLQNAGKTSLVNTIATGGY---SEDMIPTVGFNMRKVTKGNVTIKLWDLGGQR-RFR--------TMWERY 77 (177)
Q Consensus 10 ~~~~~i~i~G~~~~GKSsli~~l~~~~~---~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~-~~~--------~~~~~~ 77 (177)
++.++|+++|.||+|||||+|+|++... ......|.......+..++..+.+|||||.. .+. .....+
T Consensus 241 r~~~kV~ivG~pnvGKSSLln~L~~~~~a~vs~~~gTT~d~~~~~i~~~g~~~~l~DTaG~~~~~~~~ve~~gi~~~~~~ 320 (482)
T 1xzp_A 241 NRGLRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRGILFRIVDTAGVRSETNDLVERLGIERTLQE 320 (482)
T ss_dssp HHCEEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEETTEEEEEEESSCCCSSCCTTCCCCCHHHHHHH
T ss_pred cCCCEEEEECcCCCcHHHHHHHHHCCCCCccCCCCCeeeeeEEEEEecCCeEEEEEECCCccccchhhHHHHHHHHHHHH
Confidence 3458999999999999999999997652 2233345556667778889999999999987 543 223457
Q ss_pred hcCCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccCHHHHHHHhCcccccCCceeEEEeeec
Q 030429 78 CRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCK 157 (177)
Q Consensus 78 ~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 157 (177)
+..+|++++|+|++++.+++... .+ ..+ .++|+++|+||+|+.+....+++.+... ...+++++||+
T Consensus 321 ~~~aD~vl~VvD~s~~~s~~~~~-il-~~l-----~~~piivV~NK~DL~~~~~~~~~~~~~~------~~~~~i~iSAk 387 (482)
T 1xzp_A 321 IEKADIVLFVLDASSPLDEEDRK-IL-ERI-----KNKRYLVVINKVDVVEKINEEEIKNKLG------TDRHMVKISAL 387 (482)
T ss_dssp HHHCSEEEEEEETTSCCCHHHHH-HH-HHH-----TTSSEEEEEEECSSCCCCCHHHHHHHHT------CSTTEEEEEGG
T ss_pred hhcccEEEEEecCCCCCCHHHHH-HH-HHh-----cCCCEEEEEECcccccccCHHHHHHHhc------CCCcEEEEECC
Confidence 88899999999999988776532 22 222 2689999999999976544444433322 12468999999
Q ss_pred CCCChHHHHHHHHHHhh
Q 030429 158 DSINIDAVIDWLIKHSK 174 (177)
Q Consensus 158 ~~~~i~~l~~~l~~~~~ 174 (177)
+|.|+++++++|.+.+.
T Consensus 388 tg~Gi~eL~~~l~~~~~ 404 (482)
T 1xzp_A 388 KGEGLEKLEESIYRETQ 404 (482)
T ss_dssp GTCCHHHHHHHHHHHTH
T ss_pred CCCCHHHHHHHHHHHHh
Confidence 99999999999998754
|
| >4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica} | Back alignment and structure |
|---|
Probab=99.92 E-value=6.6e-25 Score=160.59 Aligned_cols=134 Identities=19% Similarity=0.234 Sum_probs=106.0
Q ss_pred CCCccceeEEEEEeCCEEEEEEecCCchhhHHhHHHHhcCCCEEEEEEeCC----------CCCCHHHHHHHHHHHHcCC
Q 030429 41 MIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAA----------DRDSVPIARSELHELLMKP 110 (177)
Q Consensus 41 ~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~----------~~~~~~~~~~~~~~~~~~~ 110 (177)
..+|.++....+..+++.+++||++|+++++..|..++++++++++|+|++ +..++.+...|+..+....
T Consensus 145 ~~~TiGi~~~~~~~~~v~l~iwDtaGQe~~R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~~~i~~~~ 224 (340)
T 4fid_A 145 RTKTTGIHEYDFVVKDIPFHLIDVGGQRSERKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFKDIMTNE 224 (340)
T ss_dssp CCCCCSCEEEEEESSSCEEEEEECCSCHHHHHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHHHHHHHCG
T ss_pred ccceeeeEEEEEEeeeeeeccccCCCcccccccHHHHhccCCEEEEEEECCccccccccccccchHHHHHHHHHHHhhhh
Confidence 345677788888889999999999999999999999999999999999998 6778999999999998876
Q ss_pred CCCCCcEEEEeeCCCccccc-----------------CHHHHHHHhCccc-----------ccC-----------CceeE
Q 030429 111 SLSGIPLLVLGNKIDKSEAL-----------------SKQALVDQLGLES-----------ITD-----------REVCC 151 (177)
Q Consensus 111 ~~~~~~~iiv~nK~D~~~~~-----------------~~~~~~~~~~~~~-----------~~~-----------~~~~~ 151 (177)
...+.|+++++||+|+.+.. ..++..+.+.... ... +.+.+
T Consensus 225 ~~~~~piiLv~NK~DL~~eki~~~~l~~~fp~y~g~~~~e~a~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~iy~ 304 (340)
T 4fid_A 225 FLKGAVKLIFLNKMDLFEEKLTKVPLNTIFPEYTGGDNAVMGAQYIQQLFTGKLQTEEMNISGADGTANIEGAVNEKVYT 304 (340)
T ss_dssp GGTTSEEEEEEECHHHHHHHHHHSCGGGTCTTCCCTTCHHHHHHHHHHHHHTTSEEEESCC--------------CEEEE
T ss_pred ccCCCeEEEEEECchhhhhhcCcchHHHhhhhhcCCCCHHHHHHHHHHhcccccchhhhhccccccccccccccCcceEE
Confidence 66789999999999986421 1222222211111 111 45788
Q ss_pred EEeeecCCCChHHHHHHHHHHhh
Q 030429 152 YMISCKDSINIDAVIDWLIKHSK 174 (177)
Q Consensus 152 ~~~Sa~~~~~i~~l~~~l~~~~~ 174 (177)
++|||++..||+.+|+.+.+.+.
T Consensus 305 h~TsA~dt~nv~~vF~~v~~~Il 327 (340)
T 4fid_A 305 NPTNATDGSNIKRVFMLAVDVIM 327 (340)
T ss_dssp EEECTTCHHHHHHHHHHHHHHHH
T ss_pred EEEEeeCcHHHHHHHHHHHHHHH
Confidence 99999999999999999998765
|
| >2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=99.92 E-value=1.7e-24 Score=160.96 Aligned_cols=159 Identities=19% Similarity=0.205 Sum_probs=117.4
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcCCCCC--CCCCccceeEEEEEeCCEEEEEEecCCchhhH---------HhHHHHh
Q 030429 10 KQEMELSLIGLQNAGKTSLVNTIATGGYSE--DMIPTVGFNMRKVTKGNVTIKLWDLGGQRRFR---------TMWERYC 78 (177)
Q Consensus 10 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~---------~~~~~~~ 78 (177)
...++|+++|.+|||||||++++.+..... ....|.......+..++..+.+|||||..... .......
T Consensus 165 ~~~~~v~lvG~~gvGKSTLin~L~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~ 244 (357)
T 2e87_A 165 LEIPTVVIAGHPNVGKSTLLKALTTAKPEIASYPFTTRGINVGQFEDGYFRYQIIDTPGLLDRPISERNEIEKQAILALR 244 (357)
T ss_dssp SSSCEEEEECSTTSSHHHHHHHHCSSCCEEECCTTCSSCEEEEEEEETTEEEEEEECTTTSSSCSTTSCHHHHHHHHGGG
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCeeeceeEEEEEecCceEEEEeCCCccccchhhhhHHHHHHHHHHH
Confidence 466899999999999999999999766422 22345556666666778899999999964321 1222345
Q ss_pred cCCCEEEEEEeCCCCC--CHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccCHHHHHHHhCcccccCCceeEEEeee
Q 030429 79 RGVSAILYVVDAADRD--SVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISC 156 (177)
Q Consensus 79 ~~~d~~i~v~d~~~~~--~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 156 (177)
..+|++++|+|++++. ++.....++..+..... +.|+++|+||+|+.+....++..+... ....+++++||
T Consensus 245 ~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~--~~piilV~NK~Dl~~~~~~~~~~~~~~-----~~~~~~~~iSA 317 (357)
T 2e87_A 245 YLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFK--DLPFLVVINKIDVADEENIKRLEKFVK-----EKGLNPIKISA 317 (357)
T ss_dssp GTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTT--TSCEEEEECCTTTCCHHHHHHHHHHHH-----HTTCCCEECBT
T ss_pred hcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcC--CCCEEEEEECcccCChHHHHHHHHHHH-----hcCCCeEEEeC
Confidence 5799999999998877 67777788877765432 789999999999976543333322221 12347899999
Q ss_pred cCCCChHHHHHHHHHHhhh
Q 030429 157 KDSINIDAVIDWLIKHSKT 175 (177)
Q Consensus 157 ~~~~~i~~l~~~l~~~~~~ 175 (177)
++|.|+++++++|.+.+..
T Consensus 318 ~~g~gi~~l~~~i~~~l~~ 336 (357)
T 2e87_A 318 LKGTGIDLVKEEIIKTLRP 336 (357)
T ss_dssp TTTBTHHHHHHHHHHHHHH
T ss_pred CCCcCHHHHHHHHHHHHHH
Confidence 9999999999999988753
|
| >1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1 | Back alignment and structure |
|---|
Probab=99.92 E-value=1.8e-24 Score=164.68 Aligned_cols=151 Identities=20% Similarity=0.220 Sum_probs=103.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCC---CCCCCccceeEEEEEeCCEEEEEEecCCchh---------hHHhHHHHhcC
Q 030429 13 MELSLIGLQNAGKTSLVNTIATGGYS---EDMIPTVGFNMRKVTKGNVTIKLWDLGGQRR---------FRTMWERYCRG 80 (177)
Q Consensus 13 ~~i~i~G~~~~GKSsli~~l~~~~~~---~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~---------~~~~~~~~~~~ 80 (177)
.+|+++|.||||||||+|+|++.... .....|.......+..++..+.+|||||... +......+++.
T Consensus 2 ~~v~ivG~pnvGKStL~nrl~~~~~~~v~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~~ 81 (439)
T 1mky_A 2 ATVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYGKTFKLVDTCGVFDNPQDIISQKMKEVTLNMIRE 81 (439)
T ss_dssp CEEEEECCTTSSHHHHHHHHHC--------------CCSEEEEEETTEEEEEEECTTTTSSGGGCCCHHHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCceecCCCCCccceeeEEEEECCeEEEEEECCCccccccchHHHHHHHHHHHHHHh
Confidence 37999999999999999999976532 2223344555667778889999999999653 34556678999
Q ss_pred CCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccCHHHH-HHHhCcccccCCceeEEEeeecCC
Q 030429 81 VSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQAL-VDQLGLESITDREVCCYMISCKDS 159 (177)
Q Consensus 81 ~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~Sa~~~ 159 (177)
+|++++|+|++++.+... .++..++.. .++|+++|+||+|+.+.. ..+. .+... .....++++||++|
T Consensus 82 ad~il~V~D~~~~~~~~d--~~i~~~l~~---~~~p~ilv~NK~D~~~~~-~~~~~~~~~~-----lg~~~~~~iSA~~g 150 (439)
T 1mky_A 82 ADLVLFVVDGKRGITKED--ESLADFLRK---STVDTILVANKAENLREF-EREVKPELYS-----LGFGEPIPVSAEHN 150 (439)
T ss_dssp CSEEEEEEETTTCCCHHH--HHHHHHHHH---HTCCEEEEEESCCSHHHH-HHHTHHHHGG-----GSSCSCEECBTTTT
T ss_pred CCEEEEEEECCCCCCHHH--HHHHHHHHH---cCCCEEEEEeCCCCcccc-HHHHHHHHHh-----cCCCCEEEEeccCC
Confidence 999999999987654432 233333332 368999999999985431 1111 22111 11125789999999
Q ss_pred CChHHHHHHHHHHhh
Q 030429 160 INIDAVIDWLIKHSK 174 (177)
Q Consensus 160 ~~i~~l~~~l~~~~~ 174 (177)
.|++++++.+.+.+.
T Consensus 151 ~gv~~L~~~i~~~l~ 165 (439)
T 1mky_A 151 INLDTMLETIIKKLE 165 (439)
T ss_dssp BSHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHhcc
Confidence 999999999998775
|
| >1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 | Back alignment and structure |
|---|
Probab=99.92 E-value=4.7e-24 Score=161.06 Aligned_cols=161 Identities=16% Similarity=0.175 Sum_probs=104.8
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHhcCC---CCCCCCC--ccceeEEEEEe---------------C--------CEEEE
Q 030429 9 FKQEMELSLIGLQNAGKTSLVNTIATGG---YSEDMIP--TVGFNMRKVTK---------------G--------NVTIK 60 (177)
Q Consensus 9 ~~~~~~i~i~G~~~~GKSsli~~l~~~~---~~~~~~~--t~~~~~~~~~~---------------~--------~~~~~ 60 (177)
.+..++|+++|+.++|||||+++|.+.. +.....+ |....+..... . ...+.
T Consensus 5 r~~~~~I~iiG~~d~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~ 84 (408)
T 1s0u_A 5 SQAEVNIGMVGHVDHGKTSLTKALTGVWTDRHSEELRRGISIRLGYADCEIRKCPQCGTYTTKPRCPNCLAETEFLRRVS 84 (408)
T ss_dssp CCCCEEEEEESCTTSSHHHHHHHHHSCCCCC-------CCCCCCEEEEEEEEECTTTCCEESSSBCTTSCCBCEEEEEEE
T ss_pred cCCceEEEEEcCCCCCHHHHHHHHhCCccccCcccccCCcEEEecccccccccccccccccccccccccCcccccccEEE
Confidence 3567999999999999999999998442 2222222 44433332211 1 27899
Q ss_pred EEecCCchhhHHhHHHHhcCCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccC----HHHHH
Q 030429 61 LWDLGGQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALS----KQALV 136 (177)
Q Consensus 61 ~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~----~~~~~ 136 (177)
+|||||+++|...+...+..+|++++|+|+++..........+..+... ...|+++|+||+|+.+... .+++.
T Consensus 85 iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~l---~~~~iivv~NK~Dl~~~~~~~~~~~~i~ 161 (408)
T 1s0u_A 85 FVDSPGHETLMATMLSGASLMDGAILVIAANEPCPQPQTKEHLMALEIL---GIDKIIIVQNKIDLVDEKQAEENYEQIK 161 (408)
T ss_dssp EEECSSHHHHHHHHHTTCSCCSEEEEEEETTSCSSCHHHHHHHHHHHHT---TCCCEEEEEECTTSSCTTTTTTHHHHHH
T ss_pred EEECCCHHHHHHHHHHhHhhCCEEEEEEECCCCCCCchhHHHHHHHHHc---CCCeEEEEEEccCCCCHHHHHHHHHHHH
Confidence 9999999999887777788899999999998765334333444333222 2358999999999976532 23333
Q ss_pred HHhCcccccCCceeEEEeeecCCCChHHHHHHHHHHhh
Q 030429 137 DQLGLESITDREVCCYMISCKDSINIDAVIDWLIKHSK 174 (177)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~ 174 (177)
+.+.. ......+++++||++|.|+++|+++|.+.+.
T Consensus 162 ~~l~~--~~~~~~~~i~vSA~~g~gi~~L~~~l~~~i~ 197 (408)
T 1s0u_A 162 EFVKG--TIAENAPIIPISAHHEANIDVLLKAIQDFIP 197 (408)
T ss_dssp HHHTT--STTTTCCEEEC------CHHHHHHHHHHHSC
T ss_pred HHHhh--cCCCCCeEEEeeCCCCCCHHHHHHHHHHhCC
Confidence 33332 1234568999999999999999999998654
|
| >1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=2.1e-24 Score=165.69 Aligned_cols=159 Identities=18% Similarity=0.166 Sum_probs=111.3
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhcCC----C---C--CCCCCccceeEEEEEeCCEEEEEEecCCchhhHHhHHHHhcCC
Q 030429 11 QEMELSLIGLQNAGKTSLVNTIATGG----Y---S--EDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTMWERYCRGV 81 (177)
Q Consensus 11 ~~~~i~i~G~~~~GKSsli~~l~~~~----~---~--~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~ 81 (177)
+.++|+++|.+++|||||+++|.+.. . . .....|.......+..++..+.+|||||+++|...+...+..+
T Consensus 18 ~~~~I~iiG~~d~GKSTLi~~L~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~iiDtPGh~~~~~~~~~~~~~a 97 (482)
T 1wb1_A 18 KNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLENYRITLVDAPGHADLIRAVVSAADII 97 (482)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEETTEEEEECCCSSHHHHHHHHHHHTTSC
T ss_pred CCCEEEEECCCCChHHHHHHHHHCCCcccccccccccccCccEEecceEEEEECCEEEEEEECCChHHHHHHHHHHHhhC
Confidence 57899999999999999999998765 1 1 1122344455555667889999999999999988888899999
Q ss_pred CEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccCHHHHHHHhCccc--c-cCCceeEEEeeecC
Q 030429 82 SAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLES--I-TDREVCCYMISCKD 158 (177)
Q Consensus 82 d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~--~-~~~~~~~~~~Sa~~ 158 (177)
|++++|+|+++... ......+..+.. .++|+++|+||+|+.+.+..++..+.+.... . .....+++++||++
T Consensus 98 D~~ilVvda~~g~~-~qt~e~l~~~~~----~~ip~IvviNK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~vSA~~ 172 (482)
T 1wb1_A 98 DLALIVVDAKEGPK-TQTGEHMLILDH----FNIPIIVVITKSDNAGTEEIKRTEMIMKSILQSTHNLKNSSIIPISAKT 172 (482)
T ss_dssp CEEEEEEETTTCSC-HHHHHHHHHHHH----TTCCBCEEEECTTSSCHHHHHHHHHHHHHHHHHSSSGGGCCEEECCTTT
T ss_pred CEEEEEEecCCCcc-HHHHHHHHHHHH----cCCCEEEEEECCCcccchhHHHHHHHHHHHHhhhcccccceEEEEECcC
Confidence 99999999987532 222333333222 3678899999999986433333222222110 0 11245899999999
Q ss_pred CCChHHHHHHHHHHhh
Q 030429 159 SINIDAVIDWLIKHSK 174 (177)
Q Consensus 159 ~~~i~~l~~~l~~~~~ 174 (177)
|.|+++|+++|.+.+.
T Consensus 173 g~gI~~L~~~L~~~i~ 188 (482)
T 1wb1_A 173 GFGVDELKNLIITTLN 188 (482)
T ss_dssp CTTHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhhc
Confidence 9999999999998764
|
| >1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.92 E-value=5.6e-26 Score=158.04 Aligned_cols=118 Identities=23% Similarity=0.320 Sum_probs=93.6
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHhcCCCCCC---CCCccceeEEEEEeCCEEEEEEecCCchhhHHhHHHHhcC----C
Q 030429 9 FKQEMELSLIGLQNAGKTSLVNTIATGGYSED---MIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTMWERYCRG----V 81 (177)
Q Consensus 9 ~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~---~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~----~ 81 (177)
..+.++|+++|++|+|||||++++.+..+... ..++... ......+.+||+||++.+...+..++.. +
T Consensus 9 ~~~~~~i~~~G~~g~GKTsl~~~l~~~~~~~~~~~~~~~~~~-----~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~ 83 (218)
T 1nrj_B 9 KSYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAA-----DYDGSGVTLVDFPGHVKLRYKLSDYLKTRAKFV 83 (218)
T ss_dssp -CCCCEEEEECSTTSSHHHHHHHHHHSSCCCBCCCSSCEEET-----TGGGSSCEEEECCCCGGGTHHHHHHHHHHGGGE
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHhcCCCCCeeeecCceEEE-----EeeCceEEEEECCCcHHHHHHHHHHHHhccccC
Confidence 35678999999999999999999998776442 2222221 1256789999999999998888888776 8
Q ss_pred CEEEEEEeCC-CCCCHHHHHHHHHHHHcCC---CCCCCcEEEEeeCCCcccccC
Q 030429 82 SAILYVVDAA-DRDSVPIARSELHELLMKP---SLSGIPLLVLGNKIDKSEALS 131 (177)
Q Consensus 82 d~~i~v~d~~-~~~~~~~~~~~~~~~~~~~---~~~~~~~iiv~nK~D~~~~~~ 131 (177)
|++++|+|++ ++.++.....|+..+.... ...+.|+++|+||+|+.+...
T Consensus 84 ~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~ 137 (218)
T 1nrj_B 84 KGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARP 137 (218)
T ss_dssp EEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCC
T ss_pred CEEEEEEECCCChHHHHHHHHHHHHHHhcccccccCCCCEEEEEEchHhcccCC
Confidence 9999999999 8899999988888876532 225789999999999977544
|
| >3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP} | Back alignment and structure |
|---|
Probab=99.92 E-value=1.1e-24 Score=165.97 Aligned_cols=152 Identities=18% Similarity=0.218 Sum_probs=102.6
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcCCC--CC-CCCCccceeEEEEEeCCEEEEEEecCCchhhHHhHH--------HHh
Q 030429 10 KQEMELSLIGLQNAGKTSLVNTIATGGY--SE-DMIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTMWE--------RYC 78 (177)
Q Consensus 10 ~~~~~i~i~G~~~~GKSsli~~l~~~~~--~~-~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~--------~~~ 78 (177)
++.++|+++|.+|+|||||+|+|++..+ .. ....|.......+..++..+.+|||||...+..... .++
T Consensus 222 r~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g~~v~liDT~G~~~~~~~ve~~gi~~~~~~~ 301 (462)
T 3geh_A 222 RTGLKVAIVGRPNVGKSSLLNAWSQSDRAIVTDLPGTTRDVVESQLVVGGIPVQVLDTAGIRETSDQVEKIGVERSRQAA 301 (462)
T ss_dssp HHCEEEEEEECTTSSHHHHHHHHHHHHBSCCSCCTTCCHHHHHHEEEETTEEEEECC--------------------CCC
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCeeEEEEEEEEEECCEEEEEEECCccccchhHHHHHHHHHHhhhh
Confidence 4678999999999999999999987543 22 222334444455677899999999999876554333 257
Q ss_pred cCCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccCHHHHHHHhCcccccCCceeEEEeeecC
Q 030429 79 RGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCKD 158 (177)
Q Consensus 79 ~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 158 (177)
..+|++++|+|++++.+... ..++..+ . ..|+++|+||+|+.+..... .... .....+++++||++
T Consensus 302 ~~aD~vl~VvD~s~~~~~~~-~~i~~~l-~-----~~piivV~NK~Dl~~~~~~~----~~~~---~~~~~~~i~iSAkt 367 (462)
T 3geh_A 302 NTADLVLLTIDAATGWTTGD-QEIYEQV-K-----HRPLILVMNKIDLVEKQLIT----SLEY---PENITQIVHTAAAQ 367 (462)
T ss_dssp CSCSEEEEEEETTTCSCHHH-HHHHHHH-T-----TSCEEEEEECTTSSCGGGST----TCCC---CTTCCCEEEEBTTT
T ss_pred hcCCEEEEEeccCCCCCHHH-HHHHHhc-c-----CCcEEEEEECCCCCcchhhH----HHHH---hccCCcEEEEECCC
Confidence 78999999999998766554 3344433 2 36999999999997653221 1111 11345799999999
Q ss_pred CCChHHHHHHHHHHhhh
Q 030429 159 SINIDAVIDWLIKHSKT 175 (177)
Q Consensus 159 ~~~i~~l~~~l~~~~~~ 175 (177)
|.|+++++++|.+.+..
T Consensus 368 g~Gi~eL~~~i~~~~~~ 384 (462)
T 3geh_A 368 KQGIDSLETAILEIVQT 384 (462)
T ss_dssp TBSHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHHhc
Confidence 99999999999998754
|
| >1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1 | Back alignment and structure |
|---|
Probab=99.92 E-value=3.2e-24 Score=163.40 Aligned_cols=160 Identities=18% Similarity=0.107 Sum_probs=107.8
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhcCCC---CCCCCCccceeEEEEEeCCEEEEEEecCCchhhHHhH------------H
Q 030429 11 QEMELSLIGLQNAGKTSLVNTIATGGY---SEDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTMW------------E 75 (177)
Q Consensus 11 ~~~~i~i~G~~~~GKSsli~~l~~~~~---~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~------------~ 75 (177)
..++|+++|++|||||||+|++++... ......|.......+..++..+.+|||||..+..... .
T Consensus 179 ~~~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~~~~l~Dt~G~~~~~~~~~~~~e~~~~~~~~ 258 (439)
T 1mky_A 179 DAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKYVFVDTAGLRRKSRVEPRTVEKYSNYRVV 258 (439)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEEEEESSCSCC-----------CCSCCHHHH
T ss_pred cCceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCEEEEEEECCCCccccccchhhHHHHHHHHHH
Confidence 458999999999999999999997653 2222233344455667788899999999975433221 2
Q ss_pred HHhcCCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccC--HHHHHHHhCcccccCCceeEEE
Q 030429 76 RYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALS--KQALVDQLGLESITDREVCCYM 153 (177)
Q Consensus 76 ~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 153 (177)
.++..+|++++|+|+++..+.... ++...... .++|+++|+||+|+.+... .++..+.+..........++++
T Consensus 259 ~~i~~ad~vllv~d~~~~~~~~~~--~i~~~l~~---~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (439)
T 1mky_A 259 DSIEKADVVVIVLDATQGITRQDQ--RMAGLMER---RGRASVVVFNKWDLVVHREKRYDEFTKLFREKLYFIDYSPLIF 333 (439)
T ss_dssp HHHHHCSEEEEEEETTTCCCHHHH--HHHHHHHH---TTCEEEEEEECGGGSTTGGGCHHHHHHHHHHHCGGGTTSCEEE
T ss_pred HHHhhCCEEEEEEeCCCCCCHHHH--HHHHHHHH---cCCCEEEEEECccCCCchhhHHHHHHHHHHHHhccCCCCcEEE
Confidence 356779999999999887665542 23333332 3689999999999976432 3334333322222234568999
Q ss_pred eeecCCCChHHHHHHHHHHhhh
Q 030429 154 ISCKDSINIDAVIDWLIKHSKT 175 (177)
Q Consensus 154 ~Sa~~~~~i~~l~~~l~~~~~~ 175 (177)
+||++|.|++++|+.+.+.+.+
T Consensus 334 ~SA~~g~gv~~l~~~i~~~~~~ 355 (439)
T 1mky_A 334 TSADKGWNIDRMIDAMNLAYAS 355 (439)
T ss_dssp CBTTTTBSHHHHHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHHHHHh
Confidence 9999999999999999887654
|
| >1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=3e-24 Score=159.07 Aligned_cols=133 Identities=21% Similarity=0.300 Sum_probs=97.6
Q ss_pred CccceeEEEEEeCCEEEEEEecCCchhhHHhHHHHhcCCCEEEEEEeCCC----------CCCHHHHHHHHHHHHcCCCC
Q 030429 43 PTVGFNMRKVTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAAD----------RDSVPIARSELHELLMKPSL 112 (177)
Q Consensus 43 ~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~~~~~~~~~~~~~~~~~~~ 112 (177)
+|.++....+..+++.+++|||+|++.++..|..++++++++++|+|+++ ..++.+...|+..+......
T Consensus 187 ~T~Gi~~~~~~~~~~~l~i~Dt~Gq~~~r~~w~~~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es~~~~~~i~~~~~~ 266 (362)
T 1zcb_A 187 PTKGIHEYDFEIKNVPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVF 266 (362)
T ss_dssp CCSSEEEEEEEETTEEEEEEEECC-------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGGG
T ss_pred CccceEEEEeeeCCeEEEEEeccchhhhhhhHHHHhCCCCEEEEEEECccccccccccccccHHHHHHHHHHHHhcchhh
Confidence 35566666777889999999999999999999999999999999999999 56899999999998876445
Q ss_pred CCCcEEEEeeCCCcccc------------------cCHHHHHHHh-----Cccccc-CCceeEEEeeecCCCChHHHHHH
Q 030429 113 SGIPLLVLGNKIDKSEA------------------LSKQALVDQL-----GLESIT-DREVCCYMISCKDSINIDAVIDW 168 (177)
Q Consensus 113 ~~~~~iiv~nK~D~~~~------------------~~~~~~~~~~-----~~~~~~-~~~~~~~~~Sa~~~~~i~~l~~~ 168 (177)
.+.|+++++||+|+.+. ...++..+.+ ...... .+.+.+++|||+++.||+++|++
T Consensus 267 ~~~piILv~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~~tSA~d~~nV~~vF~~ 346 (362)
T 1zcb_A 267 SNVSIILFLNKTDLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFLVECFRGKRRDQQQRPLYHHFTTAINTENIRLVFRD 346 (362)
T ss_dssp TTSEEEEEEECHHHHHHHTTTCCGGGTCTTCCSCTTCHHHHHHHHHHHHHTTCSSCC--CCEEEECCTTCHHHHHHHHHH
T ss_pred CCCCEEEEEEChhhhhhhccccchhhcCccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEecCCchhHHHHHHH
Confidence 67999999999998632 2333433322 111111 34567899999999999999999
Q ss_pred HHHHhhh
Q 030429 169 LIKHSKT 175 (177)
Q Consensus 169 l~~~~~~ 175 (177)
+.+.+.+
T Consensus 347 v~~~i~~ 353 (362)
T 1zcb_A 347 VKDTILH 353 (362)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9987754
|
| >1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=7.1e-24 Score=160.22 Aligned_cols=161 Identities=17% Similarity=0.206 Sum_probs=111.3
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHhcCCC---CCCCCC--ccceeEEEEEe------------------C-----CEEEE
Q 030429 9 FKQEMELSLIGLQNAGKTSLVNTIATGGY---SEDMIP--TVGFNMRKVTK------------------G-----NVTIK 60 (177)
Q Consensus 9 ~~~~~~i~i~G~~~~GKSsli~~l~~~~~---~~~~~~--t~~~~~~~~~~------------------~-----~~~~~ 60 (177)
.+..++|+++|+.++|||||+++|.+... .....+ |....+..... + ...+.
T Consensus 7 ~~~~~~I~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~ 86 (410)
T 1kk1_A 7 RQAEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVS 86 (410)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEEE
T ss_pred CCCccEEEEECCCCCCHHHHHHHHhCCccccChhhhcCCcEEEEeeeeeecccccccccccccccccccCcccccccEEE
Confidence 35679999999999999999999984322 222222 44443333221 0 27899
Q ss_pred EEecCCchhhHHhHHHHhcCCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccCH----HHHH
Q 030429 61 LWDLGGQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSK----QALV 136 (177)
Q Consensus 61 ~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~----~~~~ 136 (177)
+|||||+++|...+...+..+|++++|+|+++..........+..+... ...|+++|+||+|+.+.... +++.
T Consensus 87 iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~~---~~~~iivviNK~Dl~~~~~~~~~~~~i~ 163 (410)
T 1kk1_A 87 FIDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMALQII---GQKNIIIAQNKIELVDKEKALENYRQIK 163 (410)
T ss_dssp EEECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHHHHH---TCCCEEEEEECGGGSCHHHHHHHHHHHH
T ss_pred EEECCChHHHHHHHHhhhhhCCEEEEEEECCCCCCChhHHHHHHHHHHc---CCCcEEEEEECccCCCHHHHHHHHHHHH
Confidence 9999999999887777788899999999998764333333333333221 23589999999999875322 2233
Q ss_pred HHhCcccccCCceeEEEeeecCCCChHHHHHHHHHHhh
Q 030429 137 DQLGLESITDREVCCYMISCKDSINIDAVIDWLIKHSK 174 (177)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~ 174 (177)
+.+.. ......+++++||++|.|+++|+++|.+.+.
T Consensus 164 ~~l~~--~~~~~~~~i~vSA~~g~gi~~L~~~l~~~~~ 199 (410)
T 1kk1_A 164 EFIEG--TVAENAPIIPISALHGANIDVLVKAIEDFIP 199 (410)
T ss_dssp HHHTT--STTTTCCEEECBTTTTBSHHHHHHHHHHHSC
T ss_pred HHHHh--cCcCCCeEEEeeCCCCCCHHHHHHHHHHhCC
Confidence 33221 1124568999999999999999999998654
|
| >1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X | Back alignment and structure |
|---|
Probab=99.92 E-value=4.9e-24 Score=154.95 Aligned_cols=156 Identities=17% Similarity=0.167 Sum_probs=106.8
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcCCCC---CCCCCccceeEEEEEeCCEEEEEEecCCch-hhHHhH--------HHH
Q 030429 10 KQEMELSLIGLQNAGKTSLVNTIATGGYS---EDMIPTVGFNMRKVTKGNVTIKLWDLGGQR-RFRTMW--------ERY 77 (177)
Q Consensus 10 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~---~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~-~~~~~~--------~~~ 77 (177)
.+..+|+++|++|+|||||+|++++..+. .....|.......+..++.++.+|||||.. ...... ..+
T Consensus 6 ~r~~~VaIvG~~nvGKSTLln~L~g~~~~i~s~~~~tTr~~~~gi~~~~~~~i~~iDTpG~~~~~~~~l~~~~~~~~~~~ 85 (301)
T 1ega_A 6 SYCGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGAYQAIYVDTPGLHMEEKRAINRLMNKAASSS 85 (301)
T ss_dssp CEEEEEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSCEEEEEEETTEEEEEESSSSCCHHHHHHHHHHHTCCTTSC
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHCCCccccCCCCCcceeeEEEEEEECCeeEEEEECcCCCccchhhHHHHHHHHHHHH
Confidence 45568999999999999999999977542 112223333334456778999999999986 332221 234
Q ss_pred hcCCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccc-ccCHHHHHHHhCcccccCCceeEEEeee
Q 030429 78 CRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSE-ALSKQALVDQLGLESITDREVCCYMISC 156 (177)
Q Consensus 78 ~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 156 (177)
+..+|++++|+|+++ +.....++...+.. .+.|+++++||+|+.. .....+..+.+... .....++++||
T Consensus 86 l~~~D~vl~Vvd~~~---~~~~~~~i~~~l~~---~~~P~ilvlNK~D~~~~~~~~~~~l~~l~~~---~~~~~~i~iSA 156 (301)
T 1ega_A 86 IGDVELVIFVVEGTR---WTPDDEMVLNKLRE---GKAPVILAVNKVDNVQEKADLLPHLQFLASQ---MNFLDIVPISA 156 (301)
T ss_dssp CCCEEEEEEEEETTC---CCHHHHHHHHHHHS---SSSCEEEEEESTTTCCCHHHHHHHHHHHHTT---SCCSEEEECCT
T ss_pred HhcCCEEEEEEeCCC---CCHHHHHHHHHHHh---cCCCEEEEEECcccCccHHHHHHHHHHHHHh---cCcCceEEEEC
Confidence 678999999999976 33333455444443 4689999999999976 22222333333211 11226899999
Q ss_pred cCCCChHHHHHHHHHHhh
Q 030429 157 KDSINIDAVIDWLIKHSK 174 (177)
Q Consensus 157 ~~~~~i~~l~~~l~~~~~ 174 (177)
+++.|++++++.+.+.+.
T Consensus 157 ~~g~~v~~l~~~i~~~l~ 174 (301)
T 1ega_A 157 ETGLNVDTIAAIVRKHLP 174 (301)
T ss_dssp TTTTTHHHHHHHHHTTCC
T ss_pred CCCCCHHHHHHHHHHhCC
Confidence 999999999999987654
|
| >2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.91 E-value=2.5e-24 Score=163.85 Aligned_cols=151 Identities=21% Similarity=0.229 Sum_probs=101.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCC---CCCCccceeEEEEEeCCEEEEEEecCCch--------hhHHhHHHHhcCC
Q 030429 13 MELSLIGLQNAGKTSLVNTIATGGYSE---DMIPTVGFNMRKVTKGNVTIKLWDLGGQR--------RFRTMWERYCRGV 81 (177)
Q Consensus 13 ~~i~i~G~~~~GKSsli~~l~~~~~~~---~~~~t~~~~~~~~~~~~~~~~~~D~~g~~--------~~~~~~~~~~~~~ 81 (177)
.+|+++|.+|||||||+|+|++..... ....|..........++..+.+|||||+. .+......++..+
T Consensus 4 ~~V~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~a 83 (436)
T 2hjg_A 4 PVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAMDEA 83 (436)
T ss_dssp CEEEEECSTTSSHHHHHHHHEEEECC-----------CEEEECTTCSSCCEEEC---------CHHHHHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceeecCCCCCccceEEEEEEECCceEEEEECCCCCCcchhHHHHHHHHHHHHHHhC
Confidence 589999999999999999999765431 12223334444555667889999999975 5666677788999
Q ss_pred CEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccCHHHHHHHhCcccccCCceeEEEeeecCCCC
Q 030429 82 SAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCKDSIN 161 (177)
Q Consensus 82 d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 161 (177)
|++++|+|++++.+... .++..++.. .++|+++|+||+|+.+... ... ..+....-.++++||++|.|
T Consensus 84 d~il~vvD~~~~~~~~d--~~~~~~l~~---~~~pvilv~NK~D~~~~~~------~~~-~~~~lg~~~~~~iSA~~g~g 151 (436)
T 2hjg_A 84 DVIIFMVNGREGVTAAD--EEVAKILYR---TKKPVVLAVNKLDNTEMRA------NIY-DFYSLGFGEPYPISGTHGLG 151 (436)
T ss_dssp SEEEEEEETTTCSCHHH--HHHHHHHTT---CCSCEEEEEECCCC-----------CCC-SSGGGSSCCCEECBTTTTBT
T ss_pred CEEEEEEeCCCCCCHHH--HHHHHHHHH---cCCCEEEEEECccCccchh------hHH-HHHHcCCCCeEEEeCcCCCC
Confidence 99999999988766543 455555443 4789999999999865321 011 11111112689999999999
Q ss_pred hHHHHHHHHHHhhh
Q 030429 162 IDAVIDWLIKHSKT 175 (177)
Q Consensus 162 i~~l~~~l~~~~~~ 175 (177)
++++++++.+.+.+
T Consensus 152 v~~L~~~i~~~l~~ 165 (436)
T 2hjg_A 152 LGDLLDAVAEHFKN 165 (436)
T ss_dssp HHHHHHHHHHTGGG
T ss_pred hHHHHHHHHHhcCc
Confidence 99999999988753
|
| >3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana} | Back alignment and structure |
|---|
Probab=99.91 E-value=9.5e-25 Score=164.57 Aligned_cols=155 Identities=17% Similarity=0.145 Sum_probs=109.3
Q ss_pred cccceeEEEEEcCCCCCHHHHHHHHhcCCCC---CCCCCccceeEEEEEeCCE-EEEEEecCCchhhHHh-------HHH
Q 030429 8 FFKQEMELSLIGLQNAGKTSLVNTIATGGYS---EDMIPTVGFNMRKVTKGNV-TIKLWDLGGQRRFRTM-------WER 76 (177)
Q Consensus 8 ~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~---~~~~~t~~~~~~~~~~~~~-~~~~~D~~g~~~~~~~-------~~~ 76 (177)
.....++|+++|.+|+|||||++++++..+. .....|.......+...+. .+.+|||||+.++... ...
T Consensus 30 ~~~~~~kI~IvG~~~vGKSTLin~L~~~~~~~~~~~~gtT~d~~~~~~~~~~~~~l~liDTpG~~d~~~l~~~~~~~~~~ 109 (423)
T 3qq5_A 30 DAGFRRYIVVAGRRNVGKSSFMNALVGQNVSIVSDYAGTTTDPVYKSMELHPIGPVTLVDTPGLDDVGELGRLRVEKARR 109 (423)
T ss_dssp --CCCEEEEEECSCSTTTTTTTTSSCC-------------CCCCEEEEEETTTEEEEEEECSSTTCCCTTCCCCHHHHHH
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHcCCCCccCCCCCeeeeeEEEEEEECCCCeEEEEECcCCCcccchhHHHHHHHHH
Confidence 3456789999999999999999999977652 2233455566666666554 8999999998765432 456
Q ss_pred HhcCCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccCHHHHHHHhCcccccCCceeEEEeee
Q 030429 77 YCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISC 156 (177)
Q Consensus 77 ~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 156 (177)
++..+|++++|+|++. ......|+..+... +.|+++|+||+|+.+.... +..+.+.. ..+.+++++||
T Consensus 110 ~l~~aD~vllVvD~~~---~~~~~~~l~~l~~~----~~piIvV~NK~Dl~~~~~~-~~~~~l~~----~~g~~v~~vSA 177 (423)
T 3qq5_A 110 VFYRADCGILVTDSAP---TPYEDDVVNLFKEM----EIPFVVVVNKIDVLGEKAE-ELKGLYES----RYEAKVLLVSA 177 (423)
T ss_dssp HHTSCSEEEEECSSSC---CHHHHHHHHHHHHT----TCCEEEECCCCTTTTCCCT-HHHHHSSC----CTTCCCCCCSS
T ss_pred HHhcCCEEEEEEeCCC---hHHHHHHHHHHHhc----CCCEEEEEeCcCCCCccHH-HHHHHHHH----HcCCCEEEEEC
Confidence 7889999999999832 33445555555444 7899999999999876543 33333322 12347999999
Q ss_pred cCCCChHHHHHHHHHHhh
Q 030429 157 KDSINIDAVIDWLIKHSK 174 (177)
Q Consensus 157 ~~~~~i~~l~~~l~~~~~ 174 (177)
++|.|+++++++|.+.+.
T Consensus 178 ktg~gI~eL~~~L~~~l~ 195 (423)
T 3qq5_A 178 LQKKGFDDIGKTISEILP 195 (423)
T ss_dssp CCTTSTTTHHHHHHHHSC
T ss_pred CCCCCHHHHHHHHHHhhh
Confidence 999999999999999874
|
| >3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus} | Back alignment and structure |
|---|
Probab=99.91 E-value=2.3e-23 Score=158.47 Aligned_cols=155 Identities=17% Similarity=0.171 Sum_probs=106.2
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHhcCC--CC-------------------------------CCCCCccceeEEEEEeC
Q 030429 9 FKQEMELSLIGLQNAGKTSLVNTIATGG--YS-------------------------------EDMIPTVGFNMRKVTKG 55 (177)
Q Consensus 9 ~~~~~~i~i~G~~~~GKSsli~~l~~~~--~~-------------------------------~~~~~t~~~~~~~~~~~ 55 (177)
.+..++|+++|.+++|||||+++|+... .. +....|.......++.+
T Consensus 14 ~k~~~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~~~~~~ 93 (439)
T 3j2k_7 14 KKEHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFETE 93 (439)
T ss_pred CCceeEEEEEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEeEEEEecC
Confidence 4567999999999999999999996321 00 11223445555567778
Q ss_pred CEEEEEEecCCchhhHHhHHHHhcCCCEEEEEEeCCCCCC---H---HHHHHHHHHHHcCCCCCCCc-EEEEeeCCCccc
Q 030429 56 NVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAADRDS---V---PIARSELHELLMKPSLSGIP-LLVLGNKIDKSE 128 (177)
Q Consensus 56 ~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~~---~---~~~~~~~~~~~~~~~~~~~~-~iiv~nK~D~~~ 128 (177)
+..+.+|||||+++|...+..++..+|++++|+|+++... + ......+..... .++| +++|+||+|+..
T Consensus 94 ~~~~~iiDTPGh~~f~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~~~----~~v~~iIvviNK~Dl~~ 169 (439)
T 3j2k_7 94 KKHFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKT----AGVKHLIVLINKMDDPT 169 (439)
T ss_pred CeEEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCCccccccCCCchHHHHHHHHHH----cCCCeEEEEeecCCCcc
Confidence 8999999999999999988889999999999999987542 1 122333332222 2456 999999999864
Q ss_pred cc----CHHHHHHH----hCccccc-CCceeEEEeeecCCCChHHHHH
Q 030429 129 AL----SKQALVDQ----LGLESIT-DREVCCYMISCKDSINIDAVID 167 (177)
Q Consensus 129 ~~----~~~~~~~~----~~~~~~~-~~~~~~~~~Sa~~~~~i~~l~~ 167 (177)
.. ..++..+. +....+. ...++++++||++|.|++++.+
T Consensus 170 ~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~~i~iSA~~G~ni~~l~~ 217 (439)
T 3j2k_7 170 VNWSNERYEECKEKLVPFLKKVGFNPKKDIHFMPCSGLTGANLKEQSD 217 (439)
T ss_pred cchHHHHHHHHHHHHHHHHHHhcccccCCeeEEEeeccCCcccccccc
Confidence 21 11222222 2111111 1256899999999999999554
|
| >3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=1.9e-23 Score=160.79 Aligned_cols=153 Identities=14% Similarity=0.077 Sum_probs=103.7
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcCC--C-------------------------------CCCCCCccceeEEEEEeCC
Q 030429 10 KQEMELSLIGLQNAGKTSLVNTIATGG--Y-------------------------------SEDMIPTVGFNMRKVTKGN 56 (177)
Q Consensus 10 ~~~~~i~i~G~~~~GKSsli~~l~~~~--~-------------------------------~~~~~~t~~~~~~~~~~~~ 56 (177)
+..+||+++|.+++|||||+++|++.. + ......|.......++.++
T Consensus 31 k~~~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~ 110 (483)
T 3p26_A 31 LPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHR 110 (483)
T ss_dssp CCEEEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCCCCEEEEECSS
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEeeeEEEecCC
Confidence 567999999999999999999997441 0 1112335555666677888
Q ss_pred EEEEEEecCCchhhHHhHHHHhcCCCEEEEEEeCCCCCCHH-----HHHHHHHHHHcCCCCCCCcEEEEeeCCCccccc-
Q 030429 57 VTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAADRDSVP-----IARSELHELLMKPSLSGIPLLVLGNKIDKSEAL- 130 (177)
Q Consensus 57 ~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~- 130 (177)
..+.+|||||+++|...+..++..+|++++|+|+++..+.. ....+...+.... ...|+++|+||+|+.+..
T Consensus 111 ~~~~iiDTPG~~~f~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~~--~~~~iIvviNK~Dl~~~~~ 188 (483)
T 3p26_A 111 ANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSL--GIHNLIIAMNKMDNVDWSQ 188 (483)
T ss_dssp CEEEEECCCCCGGGHHHHHHHHTTCSEEEEEEECCC------CCCCHHHHHHHHHHHHT--TCCCEEEEEECGGGGTTCH
T ss_pred ceEEEEECCCcHHHHHHHHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHHHHHHc--CCCcEEEEEECcCcccchH
Confidence 99999999999999999999999999999999998864322 1222222222221 235799999999997631
Q ss_pred -CHHHHHHHhC----cccccCCceeEEEeeecCCCChHH
Q 030429 131 -SKQALVDQLG----LESITDREVCCYMISCKDSINIDA 164 (177)
Q Consensus 131 -~~~~~~~~~~----~~~~~~~~~~~~~~Sa~~~~~i~~ 164 (177)
..++..+.+. ...+....++++++||++|.|+++
T Consensus 189 ~~~~~i~~~~~~~l~~~g~~~~~~~~i~iSA~~g~gi~e 227 (483)
T 3p26_A 189 QRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYK 227 (483)
T ss_dssp HHHHHHHHHHHHHHHHHTCCGGGEEEEECCSSSCTTSSS
T ss_pred HHHHHHHHHHHHHHHHcCCCcccceEEEEeeecCCCccc
Confidence 1222222221 111222357899999999999985
|
| >2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.91 E-value=1.1e-23 Score=156.75 Aligned_cols=146 Identities=10% Similarity=0.040 Sum_probs=111.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEeCCEEEEEEecCCchhhHHhHHHHhcCCCEEEEEEeCCCC
Q 030429 14 ELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAADR 93 (177)
Q Consensus 14 ~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~ 93 (177)
+|+++|.+++|||||+++|+ ....|.+.....++.++..+.+|||||+++|.......+..+|++++|+| + .
T Consensus 23 ~i~iiG~~d~GKSTL~~~L~------~~giTi~~~~~~~~~~~~~i~iiDtPGh~~f~~~~~~~~~~aD~ailVvd-~-~ 94 (370)
T 2elf_A 23 NVAIIGTEKSGRTSLAANLG------KKGTSSDITMYNNDKEGRNMVFVDAHSYPKTLKSLITALNISDIAVLCIP-P-Q 94 (370)
T ss_dssp EEEEEESTTSSHHHHHHTTS------EEEEESSSEEEEECSSSSEEEEEECTTTTTCHHHHHHHHHTCSEEEEEEC-T-T
T ss_pred EEEEECCCCCCHHHHHHHHH------hCCEEEEeeEEEEecCCeEEEEEECCChHHHHHHHHHHHHHCCEEEEEEc-C-C
Confidence 99999999999999999997 34456666667777788899999999999998888888899999999999 4 4
Q ss_pred CCHHHHHHHHHHHHcCCCCCCCcE-EEEee-CCCcccccCHH----HHHHHhCcccccCCceeEEE--eeecC---CCCh
Q 030429 94 DSVPIARSELHELLMKPSLSGIPL-LVLGN-KIDKSEALSKQ----ALVDQLGLESITDREVCCYM--ISCKD---SINI 162 (177)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~-iiv~n-K~D~~~~~~~~----~~~~~~~~~~~~~~~~~~~~--~Sa~~---~~~i 162 (177)
........++..+... ++|. ++++| |+|+ +....+ ++.+.+... ....+++++ +||++ +.|+
T Consensus 95 g~~~qt~e~~~~~~~~----~i~~~ivvvNNK~Dl-~~~~~~~~~~~i~~~l~~~--~~~~~~ii~~~~SA~~~~~g~gi 167 (370)
T 2elf_A 95 GLDAHTGECIIALDLL----GFKHGIIALTRSDST-HMHAIDELKAKLKVITSGT--VLQDWECISLNTNKSAKNPFEGV 167 (370)
T ss_dssp CCCHHHHHHHHHHHHT----TCCEEEEEECCGGGS-CHHHHHHHHHHHHHHTTTS--TTTTCEEEECCCCTTSSSTTTTH
T ss_pred CCcHHHHHHHHHHHHc----CCCeEEEEEEeccCC-CHHHHHHHHHHHHHHHHhc--CCCceEEEecccccccCcCCCCH
Confidence 4455555555554333 5676 88899 9999 543222 222222211 123568999 99999 9999
Q ss_pred HHHHHHHHHHhh
Q 030429 163 DAVIDWLIKHSK 174 (177)
Q Consensus 163 ~~l~~~l~~~~~ 174 (177)
+++++.|.+.+.
T Consensus 168 ~~L~~~l~~~~~ 179 (370)
T 2elf_A 168 DELKARINEVAE 179 (370)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHhhcc
Confidence 999999988764
|
| >2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ... | Back alignment and structure |
|---|
Probab=99.90 E-value=2.7e-23 Score=156.82 Aligned_cols=162 Identities=19% Similarity=0.151 Sum_probs=113.5
Q ss_pred cccceeEEEEEcCCCCCHHHHHHHHhcC--------CCCC-----------CCCCccceeEEEEEeCCEEEEEEecCCch
Q 030429 8 FFKQEMELSLIGLQNAGKTSLVNTIATG--------GYSE-----------DMIPTVGFNMRKVTKGNVTIKLWDLGGQR 68 (177)
Q Consensus 8 ~~~~~~~i~i~G~~~~GKSsli~~l~~~--------~~~~-----------~~~~t~~~~~~~~~~~~~~~~~~D~~g~~ 68 (177)
..+..++|+++|++++|||||+++|.+. .+.. ....|.......+..++..+.+|||||++
T Consensus 7 ~~~~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~~~iiDtpG~~ 86 (405)
T 2c78_A 7 RTKPHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHA 86 (405)
T ss_dssp --CCEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSSCEEEEEECCCSG
T ss_pred CCCCeEEEEEEcCCCCCHHHHHHHHHhhhhhcCccccccchhhccCCHHHHHcCCCEEeeeeEeccCCeEEEEEECCChH
Confidence 3456799999999999999999999862 1111 11224444445566678899999999999
Q ss_pred hhHHhHHHHhcCCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCc-EEEEeeCCCcccccC-HH----HHHHHhCcc
Q 030429 69 RFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIP-LLVLGNKIDKSEALS-KQ----ALVDQLGLE 142 (177)
Q Consensus 69 ~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-~iiv~nK~D~~~~~~-~~----~~~~~~~~~ 142 (177)
+|...+..++..+|++++|+|+++... .....++..+... ++| +++|+||+|+.+... .+ +..+.+...
T Consensus 87 ~f~~~~~~~~~~aD~~ilVvda~~g~~-~qt~~~l~~~~~~----~ip~iivviNK~Dl~~~~~~~~~~~~~~~~~l~~~ 161 (405)
T 2c78_A 87 DYIKNMITGAAQMDGAILVVSAADGPM-PQTREHILLARQV----GVPYIVVFMNKVDMVDDPELLDLVEMEVRDLLNQY 161 (405)
T ss_dssp GGHHHHHHHHTTCSSEEEEEETTTCCC-HHHHHHHHHHHHT----TCCCEEEEEECGGGCCCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHCCEEEEEEECCCCCc-HHHHHHHHHHHHc----CCCEEEEEEECccccCcHHHHHHHHHHHHHHHHHh
Confidence 999888889999999999999988754 3445555544333 577 889999999975221 11 122222211
Q ss_pred cccCCceeEEEeeecCCCC------------------hHHHHHHHHHHhh
Q 030429 143 SITDREVCCYMISCKDSIN------------------IDAVIDWLIKHSK 174 (177)
Q Consensus 143 ~~~~~~~~~~~~Sa~~~~~------------------i~~l~~~l~~~~~ 174 (177)
.+.....+++++||++|.| +++|++.|.+.+.
T Consensus 162 ~~~~~~~~~i~~SA~~g~~v~~~~~~~~~~~~~~~~~i~~Ll~~l~~~lp 211 (405)
T 2c78_A 162 EFPGDEVPVIRGSALLALEQMHRNPKTRRGENEWVDKIWELLDAIDEYIP 211 (405)
T ss_dssp TSCTTTSCEEECCHHHHHHHHHHCTTCCTTSCHHHHHHHHHHHHHHHHSC
T ss_pred cccccCCCEEEccHHHhhhhhccccccccCCCcccccHHHHHHHHHhhcC
Confidence 1222346899999999987 8888888887653
|
| >2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A | Back alignment and structure |
|---|
Probab=99.90 E-value=3.7e-23 Score=153.57 Aligned_cols=162 Identities=24% Similarity=0.290 Sum_probs=105.1
Q ss_pred ceeE-EEEEcCCCCCHHHHHHHHhcCCCC--CCCCCccceeEEEEEeCCEEEEEEecCCc---------hhhHHhHHHHh
Q 030429 11 QEME-LSLIGLQNAGKTSLVNTIATGGYS--EDMIPTVGFNMRKVTKGNVTIKLWDLGGQ---------RRFRTMWERYC 78 (177)
Q Consensus 11 ~~~~-i~i~G~~~~GKSsli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~D~~g~---------~~~~~~~~~~~ 78 (177)
..++ |+++|.+|+|||||+|++.+.... .....|.+.....+..++..+.+|||+|. +.+.... ..+
T Consensus 177 ~~~~~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g~~v~l~DT~G~i~~lp~~lve~f~~tl-~~~ 255 (364)
T 2qtf_A 177 NNIPSIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNRKIMLVDTVGFIRGIPPQIVDAFFVTL-SEA 255 (364)
T ss_dssp --CCEEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETTEEEEEEECCCBCSSCCGGGHHHHHHHH-HGG
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECCEEEEEEeCCCchhcCCHHHHHHHHHHH-HHH
Confidence 3455 999999999999999999976652 22344555666777788889999999996 2233333 347
Q ss_pred cCCCEEEEEEeCCCCC--CHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccCHH--HHHHHhCcccccCCceeEEEe
Q 030429 79 RGVSAILYVVDAADRD--SVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQ--ALVDQLGLESITDREVCCYMI 154 (177)
Q Consensus 79 ~~~d~~i~v~d~~~~~--~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 154 (177)
..+|++++|+|++++. .......+ ..++......+.|+++|+||+|+.+....+ ...+.+... ......+++++
T Consensus 256 ~~aD~il~VvD~s~~~~~~~~~~~~~-~~~L~~l~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~l~~~-l~~~~~~~~~~ 333 (364)
T 2qtf_A 256 KYSDALILVIDSTFSENLLIETLQSS-FEILREIGVSGKPILVTLNKIDKINGDLYKKLDLVEKLSKE-LYSPIFDVIPI 333 (364)
T ss_dssp GGSSEEEEEEETTSCHHHHHHHHHHH-HHHHHHHTCCSCCEEEEEECGGGCCSCHHHHHHHHHHHHHH-HCSCEEEEEEC
T ss_pred HhCCEEEEEEECCCCcchHHHHHHHH-HHHHHHhCcCCCCEEEEEECCCCCCchHHHHHHHHHHHHHH-hcCCCCcEEEE
Confidence 8899999999998875 33333322 222222223468999999999997643111 111011000 00123367999
Q ss_pred eecCCCChHHHHHHHHHHhhh
Q 030429 155 SCKDSINIDAVIDWLIKHSKT 175 (177)
Q Consensus 155 Sa~~~~~i~~l~~~l~~~~~~ 175 (177)
||+++.|++++++.|.+.+..
T Consensus 334 SA~~g~gi~~L~~~I~~~l~~ 354 (364)
T 2qtf_A 334 SALKRTNLELLRDKIYQLATQ 354 (364)
T ss_dssp BTTTTBSHHHHHHHHHHHHHH
T ss_pred ECCCCcCHHHHHHHHHHHhcc
Confidence 999999999999999987754
|
| >2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A | Back alignment and structure |
|---|
Probab=99.90 E-value=2.2e-23 Score=148.72 Aligned_cols=161 Identities=17% Similarity=0.130 Sum_probs=104.5
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHhcCC-CCCCCC---CccceeEEEEEeCCEEEEEEecCCchhhH-----------Hh
Q 030429 9 FKQEMELSLIGLQNAGKTSLVNTIATGG-YSEDMI---PTVGFNMRKVTKGNVTIKLWDLGGQRRFR-----------TM 73 (177)
Q Consensus 9 ~~~~~~i~i~G~~~~GKSsli~~l~~~~-~~~~~~---~t~~~~~~~~~~~~~~~~~~D~~g~~~~~-----------~~ 73 (177)
....++|+++|.+|||||||++++++.. +..... .|..........++..+.+|||||+..+. ..
T Consensus 19 ~~~~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~~~~~~i~~~ 98 (260)
T 2xtp_A 19 SRSELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWGNREIVIIDTPDMFSWKDHCEALYKEVQRC 98 (260)
T ss_dssp --CCEEEEEEECTTSCHHHHHHHHHTSCCSCCCTTSCCCCCSCEEEEEEETTEEEEEEECCGGGGSSCCCHHHHHHHHHH
T ss_pred CCCceEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceeeeeEEEEEEeCCCEEEEEECcCCCCCCCCHHHHHHHHHHH
Confidence 3456899999999999999999999766 333322 23444555667788999999999975542 22
Q ss_pred HHHHhcCCCEEEEEEeCCCCCCHH-HHHHHHHHHHcCCCCCCCcEEEEee-CCCcccccCHHH------------HHHHh
Q 030429 74 WERYCRGVSAILYVVDAADRDSVP-IARSELHELLMKPSLSGIPLLVLGN-KIDKSEALSKQA------------LVDQL 139 (177)
Q Consensus 74 ~~~~~~~~d~~i~v~d~~~~~~~~-~~~~~~~~~~~~~~~~~~~~iiv~n-K~D~~~~~~~~~------------~~~~~ 139 (177)
...+++.+|++++|+|+++..... ....++...... ....|.++++| |+|+... .... +.+.+
T Consensus 99 ~~~~~~~~d~il~V~d~~~~~~~~~~~~~~l~~~~~~--~~~~~~i~vv~nK~Dl~~~-~~~~~i~~~~~~~~~~~~~~~ 175 (260)
T 2xtp_A 99 YLLSAPGPHVLLLVTQLGRYTSQDQQAAQRVKEIFGE--DAMGHTIVLFTHKEDLNGG-SLMDYMHDSDNKALSKLVAAC 175 (260)
T ss_dssp HHHHTTCCSEEEEEEETTCCCHHHHHHHHHHHHHHCG--GGGGGEEEEEECGGGGTTC-CHHHHHHHCCCHHHHHHHHHT
T ss_pred HHhcCCCCcEEEEEEeCCCCCHHHHHHHHHHHHHhCc--hhhccEEEEEEcccccCCc-cHHHHHHhcchHHHHHHHHHh
Confidence 234678999999999998622221 122333333221 01356666666 9999753 3333 23333
Q ss_pred CcccccCCceeEEEeeecCCCChHHHHHHHHHHhhh
Q 030429 140 GLESITDREVCCYMISCKDSINIDAVIDWLIKHSKT 175 (177)
Q Consensus 140 ~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~ 175 (177)
+..... +..+++||++|.|++++|+.|.+.+..
T Consensus 176 ~~~~~~---~~~~~~SA~~~~gv~~l~~~i~~~~~~ 208 (260)
T 2xtp_A 176 GGRICA---FNNRAEGSNQDDQVKELMDCIEDLLME 208 (260)
T ss_dssp TTCEEE---CCTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCeEEE---ecCcccccccHHHHHHHHHHHHHHHHh
Confidence 221100 111789999999999999999998765
|
| >2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=9.8e-23 Score=159.13 Aligned_cols=159 Identities=17% Similarity=0.185 Sum_probs=110.9
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHhcC--CCCC---------------CCCCccceeEEEEEe-----CCEEEEEEecCC
Q 030429 9 FKQEMELSLIGLQNAGKTSLVNTIATG--GYSE---------------DMIPTVGFNMRKVTK-----GNVTIKLWDLGG 66 (177)
Q Consensus 9 ~~~~~~i~i~G~~~~GKSsli~~l~~~--~~~~---------------~~~~t~~~~~~~~~~-----~~~~~~~~D~~g 66 (177)
.++..+|+++|+.++|||||+++|+.. .... ....|.......+.+ ..+.+++|||||
T Consensus 3 ~~~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGITI~~~~~~~~~~~~dg~~~~inliDTPG 82 (600)
T 2ywe_A 3 QKNVRNFCIIAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKMQAVRMFYKAKDGNTYKLHLIDTPG 82 (600)
T ss_dssp GGGEEEEEEECC--CCHHHHHHHHHHHHTC-----------------------CCCCSEEEEEECTTSCEEEEEEECCCC
T ss_pred ccCceEEEEECCCCCCHHHHHHHHHhccCCcccccccccccccchhhhcccceeeeeEEEEEEEcCCCCeEEEEEEECCC
Confidence 356689999999999999999999752 1111 011122222223322 237899999999
Q ss_pred chhhHHhHHHHhcCCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccCHHHHHHHhCcccccC
Q 030429 67 QRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITD 146 (177)
Q Consensus 67 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~ 146 (177)
+.+|...+..++..+|++++|+|+++..+......|.... . .+.|+++|+||+|+.+.. .++..+.+... ...
T Consensus 83 h~dF~~ev~r~l~~aD~aILVVDa~~gv~~qt~~~~~~a~-~----~~ipiIvviNKiDl~~a~-~~~v~~el~~~-lg~ 155 (600)
T 2ywe_A 83 HVDFSYEVSRALAACEGALLLIDASQGIEAQTVANFWKAV-E----QDLVIIPVINKIDLPSAD-VDRVKKQIEEV-LGL 155 (600)
T ss_dssp SGGGHHHHHHHHHTCSEEEEEEETTTBCCHHHHHHHHHHH-H----TTCEEEEEEECTTSTTCC-HHHHHHHHHHT-SCC
T ss_pred cHhHHHHHHHHHHhCCEEEEEEECCCCccHHHHHHHHHHH-H----CCCCEEEEEeccCccccC-HHHHHHHHHHh-hCC
Confidence 9999998888999999999999999988777766655443 2 368999999999997643 33333333211 111
Q ss_pred CceeEEEeeecCCCChHHHHHHHHHHhh
Q 030429 147 REVCCYMISCKDSINIDAVIDWLIKHSK 174 (177)
Q Consensus 147 ~~~~~~~~Sa~~~~~i~~l~~~l~~~~~ 174 (177)
....++++||++|.|+++++++|.+.+.
T Consensus 156 ~~~~vi~vSAktg~GI~~Lle~I~~~lp 183 (600)
T 2ywe_A 156 DPEEAILASAKEGIGIEEILEAIVNRIP 183 (600)
T ss_dssp CGGGCEECBTTTTBSHHHHHHHHHHHSC
T ss_pred CcccEEEEEeecCCCchHHHHHHHHhcc
Confidence 2235899999999999999999998764
|
| >2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.90 E-value=7.3e-24 Score=156.50 Aligned_cols=121 Identities=17% Similarity=0.285 Sum_probs=91.5
Q ss_pred CCEEEEEEecCCchhhHHhHHHHhcCCCEEEEEEeCC----------CCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCC
Q 030429 55 GNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAA----------DRDSVPIARSELHELLMKPSLSGIPLLVLGNKI 124 (177)
Q Consensus 55 ~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~ 124 (177)
+.+.+++|||+|+++++..+..++++++++++|+|++ +..++++...|+..+.......+.|+++|+||+
T Consensus 181 ~~v~l~iwDtaGQe~~r~~~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~~~~~~~i~~~~~~~~~piiLvgNK~ 260 (354)
T 2xtz_A 181 SGEVYRLFDVGGQRNERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKF 260 (354)
T ss_dssp ---EEEEEEECCSTTGGGGTGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBHHHHHHHHHHHHHTCGGGSSCEEEEEEECH
T ss_pred cceeeEEEECCCchhhhHHHHHHhCCCCEEEEEEECcccccccccccchhHHHHHHHHHHHHHhccccCCCeEEEEEECc
Confidence 4588999999999999999999999999999999998 778899999999998776444679999999999
Q ss_pred CcccccC-----------------------HHHHHHHhCccc-----------ccCCceeEEEeeecCCCChHHHHHHHH
Q 030429 125 DKSEALS-----------------------KQALVDQLGLES-----------ITDREVCCYMISCKDSINIDAVIDWLI 170 (177)
Q Consensus 125 D~~~~~~-----------------------~~~~~~~~~~~~-----------~~~~~~~~~~~Sa~~~~~i~~l~~~l~ 170 (177)
|+.+... .++..+...... ...+.+.+++|||+++.||+++|+++.
T Consensus 261 DL~~~k~~~v~l~~~~~fp~y~~~~~~~~~~~~a~~~~~~~f~~l~~~~~~~~~~~~~~~~~eTSA~d~~nV~~vF~~v~ 340 (354)
T 2xtz_A 261 DIFEKKVLDVPLNVCEWFRDYQPVSSGKQEIEHAYEFVKKKFEELYYQNTAPDRVDRVFKIYRTTALDQKLVKKTFKLVD 340 (354)
T ss_dssp HHHHHHTTTSCGGGSGGGTTCCCCSSHHHHHHHHHHHHHHHHHHHHHHTCCTTTTTSCEEEEECCTTCHHHHHHHHHHHH
T ss_pred chhhhhcccccccccccccccccccCCCcCHHHHHHHHHHHHHHhhhccccccccCcceEEEEEEeecchhHHHHHHHHH
Confidence 9853211 112211111100 002345578999999999999999999
Q ss_pred HHhhh
Q 030429 171 KHSKT 175 (177)
Q Consensus 171 ~~~~~ 175 (177)
+.+.+
T Consensus 341 ~~I~~ 345 (354)
T 2xtz_A 341 ETLRR 345 (354)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 87754
|
| >1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=3.2e-23 Score=154.83 Aligned_cols=132 Identities=20% Similarity=0.189 Sum_probs=101.1
Q ss_pred ccceeEEEEEeCCEEEEEEecCCchhhHHhHHHHhcCCCEEEEEEeCCC----------CCCHHHHHHHHHHHHcCCCCC
Q 030429 44 TVGFNMRKVTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAAD----------RDSVPIARSELHELLMKPSLS 113 (177)
Q Consensus 44 t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~~~~~~~~~~~~~~~~~~~~ 113 (177)
|.++....+..+++.+++|||+|+++++..|..++++++++++|+|+++ ..++.+...|+..+.......
T Consensus 204 TiGi~~~~~~~~~v~l~iwDtaGQe~~r~~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~~~~~~~i~~~~~~~ 283 (402)
T 1azs_C 204 TSGIFETKFQVDKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLR 283 (402)
T ss_dssp CCSEEEEEEEETTEEEEEEEECCSGGGGGGGGGGTTTCCEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCTTCS
T ss_pred eeeeEEEEeecCCccceecccchhhhhhhhhHhhccCCCEEEEEEECcccccccccccccchHHHHHHHHHHHHhcccCC
Confidence 4455555566778999999999999999999999999999999999999 889999999999998765557
Q ss_pred CCcEEEEeeCCCcccccC--------------------------------HHHHHHHh----Cccc----ccCCceeEEE
Q 030429 114 GIPLLVLGNKIDKSEALS--------------------------------KQALVDQL----GLES----ITDREVCCYM 153 (177)
Q Consensus 114 ~~~~iiv~nK~D~~~~~~--------------------------------~~~~~~~~----~~~~----~~~~~~~~~~ 153 (177)
+.|+++|+||+|+.+... .++..+.. .... ...+.+.+++
T Consensus 284 ~~piiLvgNK~DL~~~ki~~~~~~l~~~fp~y~~~~~~~~~~~~~g~~~~~~~a~~fi~~kF~~~~~~~~~~~~~~~~~~ 363 (402)
T 1azs_C 284 TISVILFLNKQDLLAEKVLAGKSKIEDYFPEFARYTTPEDATPEPGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHF 363 (402)
T ss_dssp SCCEEEEEECHHHHHHHHHHCSSCGGGTCGGGGTCCCCSSCCCCTTCCHHHHHHHHHHHHHHHHHHHTSCTTSSCEEEEE
T ss_pred CCeEEEEEEChhhhhhhhcccccchhhccccccccccccccccccCCcccHHHHHHHHHHHHHHhhccccccCcccEEEE
Confidence 899999999999743210 11111110 0000 0113456789
Q ss_pred eeecCCCChHHHHHHHHHHhhh
Q 030429 154 ISCKDSINIDAVIDWLIKHSKT 175 (177)
Q Consensus 154 ~Sa~~~~~i~~l~~~l~~~~~~ 175 (177)
|||+++.||+++|+.+.+.+.+
T Consensus 364 TSA~d~~nV~~vF~~v~~~I~~ 385 (402)
T 1azs_C 364 TCAVDTENIRRVFNDCRDIIQR 385 (402)
T ss_dssp CCTTCHHHHHHHHHHHHHHHHH
T ss_pred EEeecCcCHHHHHHHHHHHHHH
Confidence 9999999999999999887654
|
| >1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 | Back alignment and structure |
|---|
Probab=99.90 E-value=3.4e-23 Score=157.48 Aligned_cols=153 Identities=13% Similarity=0.079 Sum_probs=104.0
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHhcCC---CCCC--------------------------------CCCccceeEEEEE
Q 030429 9 FKQEMELSLIGLQNAGKTSLVNTIATGG---YSED--------------------------------MIPTVGFNMRKVT 53 (177)
Q Consensus 9 ~~~~~~i~i~G~~~~GKSsli~~l~~~~---~~~~--------------------------------~~~t~~~~~~~~~ 53 (177)
.+..++|+++|.+++|||||+++|++.. +... ..-|.......+.
T Consensus 21 ~~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~i~~~s~~~gt~~~~~~~~~~~d~~~~E~~rGiTi~~~~~~~~ 100 (434)
T 1zun_B 21 RKEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFS 100 (434)
T ss_dssp SCEEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEE
T ss_pred cCCceEEEEEECCCCCHHHHHHHHHhhcCCCchhhhhhhhhhhhccCccccchhhhhhhccChhHHHCCcEEEeeeeEee
Confidence 3556999999999999999999998543 1100 1123333444566
Q ss_pred eCCEEEEEEecCCchhhHHhHHHHhcCCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccc--C
Q 030429 54 KGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEAL--S 131 (177)
Q Consensus 54 ~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~--~ 131 (177)
.++..+.+|||||+++|...+..++..+|++++|+|+++... .....++...... ...|+++|+||+|+.+.. .
T Consensus 101 ~~~~~~~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~-~qt~~~l~~~~~~---~~~~iIvviNK~Dl~~~~~~~ 176 (434)
T 1zun_B 101 TAKRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQ-TQTRRHSYIASLL---GIKHIVVAINKMDLNGFDERV 176 (434)
T ss_dssp CSSEEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSC-HHHHHHHHHHHHT---TCCEEEEEEECTTTTTSCHHH
T ss_pred cCCceEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCCc-HHHHHHHHHHHHc---CCCeEEEEEEcCcCCcccHHH
Confidence 678899999999999999888888999999999999988753 3333444333222 124699999999997632 1
Q ss_pred HHHHHHHhC----cccccCCceeEEEeeecCCCChHHH
Q 030429 132 KQALVDQLG----LESITDREVCCYMISCKDSINIDAV 165 (177)
Q Consensus 132 ~~~~~~~~~----~~~~~~~~~~~~~~Sa~~~~~i~~l 165 (177)
.++..+.+. ...+.....+++++||++|.|++++
T Consensus 177 ~~~i~~~~~~~~~~~g~~~~~~~~i~vSA~~g~gi~~~ 214 (434)
T 1zun_B 177 FESIKADYLKFAEGIAFKPTTMAFVPMSALKGDNVVNK 214 (434)
T ss_dssp HHHHHHHHHHHHHTTTCCCSEEEEEECCTTTCTTTSSC
T ss_pred HHHHHHHHHHHHHHhCCCccCceEEEEeccCCCCcccc
Confidence 112222221 1111123468999999999999874
|
| >3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C* | Back alignment and structure |
|---|
Probab=99.90 E-value=6.4e-23 Score=160.39 Aligned_cols=157 Identities=17% Similarity=0.163 Sum_probs=106.8
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhcCC--CCC---------------CCCCccceeEEEEEeC-----CEEEEEEecCCch
Q 030429 11 QEMELSLIGLQNAGKTSLVNTIATGG--YSE---------------DMIPTVGFNMRKVTKG-----NVTIKLWDLGGQR 68 (177)
Q Consensus 11 ~~~~i~i~G~~~~GKSsli~~l~~~~--~~~---------------~~~~t~~~~~~~~~~~-----~~~~~~~D~~g~~ 68 (177)
+..||+++|+.++|||||+++|+... ... ....|.......+.+. .+.+++|||||+.
T Consensus 3 ~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGiTi~~~~~~~~~~~~~g~~~~l~liDTPGh~ 82 (599)
T 3cb4_D 3 NIRNFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDTPGHV 82 (599)
T ss_dssp TEEEEEEECCC----CCHHHHHHHHTTC--------------------------CEEEEEEECTTSCEEEEEEEECCCCG
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcCCcccccccccccccchhhhcccceeeeeEEEEEEecCCCCeEEEEEEECCCch
Confidence 45799999999999999999998521 111 0111222222333322 4889999999999
Q ss_pred hhHHhHHHHhcCCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccCHHHHHHHhCcccccCCc
Q 030429 69 RFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDRE 148 (177)
Q Consensus 69 ~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~ 148 (177)
+|...+..++..+|++++|+|+++..+......|.... . .++|+++|+||+|+.+.. .++..+.+... .....
T Consensus 83 dF~~ev~~~l~~aD~aILVVDa~~gv~~qt~~~~~~~~-~----~~ipiIvViNKiDl~~a~-~~~v~~ei~~~-lg~~~ 155 (599)
T 3cb4_D 83 DFSYEVSRSLAACEGALLVVDAGQGVEAQTLANCYTAM-E----MDLEVVPVLNKIDLPAAD-PERVAEEIEDI-VGIDA 155 (599)
T ss_dssp GGHHHHHHHHHHCSEEEEEEETTTCCCTHHHHHHHHHH-H----TTCEEEEEEECTTSTTCC-HHHHHHHHHHH-TCCCC
T ss_pred HHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHH-H----CCCCEEEeeeccCccccc-HHHHHHHHHHH-hCCCc
Confidence 99999999999999999999999988777766665544 2 268999999999997643 33322222111 11112
Q ss_pred eeEEEeeecCCCChHHHHHHHHHHhh
Q 030429 149 VCCYMISCKDSINIDAVIDWLIKHSK 174 (177)
Q Consensus 149 ~~~~~~Sa~~~~~i~~l~~~l~~~~~ 174 (177)
..++++||++|.|+++++++|.+.+.
T Consensus 156 ~~vi~vSAktg~GI~~Ll~~I~~~lp 181 (599)
T 3cb4_D 156 TDAVRCSAKTGVGVQDVLERLVRDIP 181 (599)
T ss_dssp TTCEEECTTTCTTHHHHHHHHHHHSC
T ss_pred ceEEEeecccCCCchhHHHHHhhcCC
Confidence 24899999999999999999998765
|
| >3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=99.90 E-value=1.1e-22 Score=157.49 Aligned_cols=116 Identities=20% Similarity=0.208 Sum_probs=89.8
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHhcC-----------------CCC-------CCCCCccceeEEEEEeCCEEEEEEec
Q 030429 9 FKQEMELSLIGLQNAGKTSLVNTIATG-----------------GYS-------EDMIPTVGFNMRKVTKGNVTIKLWDL 64 (177)
Q Consensus 9 ~~~~~~i~i~G~~~~GKSsli~~l~~~-----------------~~~-------~~~~~t~~~~~~~~~~~~~~~~~~D~ 64 (177)
..+..+|+++|.+|+|||||+++|+.. ... .....|.......+..+++.+++|||
T Consensus 10 ~~~~r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~liDT 89 (528)
T 3tr5_A 10 TAMRRTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVTTSVMQFPYKDYLINLLDT 89 (528)
T ss_dssp HHTEEEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCSSSSSEEEEEETTEEEEEECC
T ss_pred hhcCCEEEEECCCCCcHHHHHHHHHhhcCCcccceeeeccccccceecccchhhhcCCeeEEEeEEEEEeCCEEEEEEEC
Confidence 456789999999999999999999611 000 01223555566677888999999999
Q ss_pred CCchhhHHhHHHHhcCCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccc
Q 030429 65 GGQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEA 129 (177)
Q Consensus 65 ~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~ 129 (177)
||+.+|......++..+|++++|+|+++........ .+..... .++|+++|+||+|+...
T Consensus 90 PG~~df~~~~~~~l~~aD~allVvDa~~g~~~~t~~-~~~~~~~----~~iPiivviNK~Dl~~~ 149 (528)
T 3tr5_A 90 PGHADFTEDTYRTLTAVDSALMVIDAAKGVEPRTIK-LMEVCRL----RHTPIMTFINKMDRDTR 149 (528)
T ss_dssp CCSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHHHH-HHHHHHT----TTCCEEEEEECTTSCCS
T ss_pred CCchhHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHH-HHHHHHH----cCCCEEEEEeCCCCccc
Confidence 999999999999999999999999999876665544 3333333 36899999999999653
|
| >1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=7.9e-24 Score=160.96 Aligned_cols=153 Identities=18% Similarity=0.161 Sum_probs=101.4
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHhcC--CCCC-------------------------------CCCCccceeEEEEEeC
Q 030429 9 FKQEMELSLIGLQNAGKTSLVNTIATG--GYSE-------------------------------DMIPTVGFNMRKVTKG 55 (177)
Q Consensus 9 ~~~~~~i~i~G~~~~GKSsli~~l~~~--~~~~-------------------------------~~~~t~~~~~~~~~~~ 55 (177)
.+..++|+++|++++|||||+++|+.. .+.. ....|.......++.+
T Consensus 3 ~k~~~~I~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~~~~~~~~ 82 (435)
T 1jny_A 3 QKPHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFETK 82 (435)
T ss_dssp -CCEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEECS
T ss_pred CCCEEEEEEEeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEeeEEEEecC
Confidence 356789999999999999999999853 2221 1223444555566778
Q ss_pred CEEEEEEecCCchhhHHhHHHHhcCCCEEEEEEeCCCCCCHHHH-------HHHHHHHHcCCCCCCCcEEEEeeCCCccc
Q 030429 56 NVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAADRDSVPIA-------RSELHELLMKPSLSGIPLLVLGNKIDKSE 128 (177)
Q Consensus 56 ~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~iiv~nK~D~~~ 128 (177)
+..+.+|||||+.+|...+..++..+|++++|+|+++ .+++.. ...+...... ...|+++|+||+|+.+
T Consensus 83 ~~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvDa~~-gsfe~~~~~~~qt~~~~~~~~~~---~~~~iivviNK~Dl~~ 158 (435)
T 1jny_A 83 KYFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKK-GEYEAGMSVEGQTREHIILAKTM---GLDQLIVAVNKMDLTE 158 (435)
T ss_dssp SCEEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECST-THHHHHHSTTCHHHHHHHHHHHT---TCTTCEEEEECGGGSS
T ss_pred CeEEEEEECCCcHHHHHHHHhhhhhcCEEEEEEECCC-CccccccccchHHHHHHHHHHHc---CCCeEEEEEEcccCCC
Confidence 8999999999999999988899999999999999988 555532 2222222222 1246899999999976
Q ss_pred cc----CHH----HHHHHhCcccccCCceeEEEeeecCCCChHHH
Q 030429 129 AL----SKQ----ALVDQLGLESITDREVCCYMISCKDSINIDAV 165 (177)
Q Consensus 129 ~~----~~~----~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l 165 (177)
.. ..+ ++.+.+....+....++++++||++|.|+.++
T Consensus 159 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~iSA~~g~~v~e~ 203 (435)
T 1jny_A 159 PPYDEKRYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNITHK 203 (435)
T ss_dssp STTCHHHHHHHHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTTBC
T ss_pred ccccHHHHHHHHHHHHHHHHHcCCCcCCceEEEeecccCcccccc
Confidence 21 112 22222221122222468999999999999754
|
| >1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=5.2e-23 Score=154.84 Aligned_cols=159 Identities=16% Similarity=0.094 Sum_probs=110.2
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhcCC-------CCC-----------CCCCccceeEEEEEeCCEEEEEEecCCchhhHH
Q 030429 11 QEMELSLIGLQNAGKTSLVNTIATGG-------YSE-----------DMIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRT 72 (177)
Q Consensus 11 ~~~~i~i~G~~~~GKSsli~~l~~~~-------~~~-----------~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~ 72 (177)
..+||+++|++++|||||+++|.+.. +.. ....|.......+..++..+.+|||||+.+|..
T Consensus 2 ~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~~~iiDtpG~~~f~~ 81 (397)
T 1d2e_A 2 PHVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGHADYVK 81 (397)
T ss_dssp CEEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSSCEEEEEECSSHHHHHH
T ss_pred CeEEEEEEeCCCCCHHHHHHHHhChhhhcCccccchhhhhhcCHHHHhcCcEEEeeeEEeccCCeEEEEEECCChHHHHH
Confidence 56899999999999999999998531 110 112233333344556778999999999999988
Q ss_pred hHHHHhcCCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCc-EEEEeeCCCcccccC-H----HHHHHHhCcccccC
Q 030429 73 MWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIP-LLVLGNKIDKSEALS-K----QALVDQLGLESITD 146 (177)
Q Consensus 73 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-~iiv~nK~D~~~~~~-~----~~~~~~~~~~~~~~ 146 (177)
.+..++..+|++++|+|+++...... ..++..+.. .++| +++|+||+|+.+... . ++..+.+....+..
T Consensus 82 ~~~~~~~~aD~~ilVvda~~g~~~qt-~e~l~~~~~----~~vp~iivviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~ 156 (397)
T 1d2e_A 82 NMITGTAPLDGCILVVAANDGPMPQT-REHLLLARQ----IGVEHVVVYVNKADAVQDSEMVELVELEIRELLTEFGYKG 156 (397)
T ss_dssp HHHHTSSCCSEEEEEEETTTCSCHHH-HHHHHHHHH----TTCCCEEEEEECGGGCSCHHHHHHHHHHHHHHHHHTTSCT
T ss_pred HHHhhHhhCCEEEEEEECCCCCCHHH-HHHHHHHHH----cCCCeEEEEEECcccCCCHHHHHHHHHHHHHHHHHcCCCc
Confidence 88888999999999999988654433 334433322 2677 689999999975221 1 12222222112222
Q ss_pred CceeEEEeeecCCCC----------hHHHHHHHHHHhh
Q 030429 147 REVCCYMISCKDSIN----------IDAVIDWLIKHSK 174 (177)
Q Consensus 147 ~~~~~~~~Sa~~~~~----------i~~l~~~l~~~~~ 174 (177)
...+++++||++|.| +++|++.|.+.+.
T Consensus 157 ~~~~~i~~SA~~g~n~~~~~~~~g~i~~Ll~~l~~~~p 194 (397)
T 1d2e_A 157 EETPIIVGSALCALEQRDPELGLKSVQKLLDAVDTYIP 194 (397)
T ss_dssp TTSCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHHHSC
T ss_pred ccCcEEEeehhhcccccCCCccCCcHHHHHHHHHHhCC
Confidence 346899999999764 8999999988654
|
| >3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.90 E-value=3.7e-25 Score=170.74 Aligned_cols=160 Identities=18% Similarity=0.171 Sum_probs=113.2
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCC--ccceeEEEEEe-CCEEEEEEecCCchhhHHhHHHHhcCCCEEEE
Q 030429 10 KQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIP--TVGFNMRKVTK-GNVTIKLWDLGGQRRFRTMWERYCRGVSAILY 86 (177)
Q Consensus 10 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~--t~~~~~~~~~~-~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~ 86 (177)
++..+|+++|++++|||||+++|.+..+.....+ |..+....+.. ++..+.+|||||++.|...+..++..+|++++
T Consensus 2 ~r~pkV~IvG~~~vGKTSLl~~L~~~~~~~~~~~giT~~i~~~~v~~~~g~~i~~iDTPGhe~f~~~~~~~~~~aD~vIL 81 (537)
T 3izy_P 2 PRSPVVTIMGHVDHGKTTLLDKLRKTQVAAMEAGGITQHIGAFLVSLPSGEKITFLDTPGHAAFSAMRARGTQVTDIVIL 81 (537)
T ss_dssp CCCCBCEEEESTTTTHHHHHHHHHHHHHHHSSSCCBCCCTTSCCBCSSCSSCCBCEECSSSCCTTTSBBSSSBSBSSCEE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCcccccCCceeEEEeEEEEEeCCCCEEEEEECCChHHHHHHHHHHHccCCEEEE
Confidence 4678999999999999999999986544322222 22233333333 45689999999999999888888999999999
Q ss_pred EEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccc--CHHHHHHHhCcc-cccCCceeEEEeeecCCCChH
Q 030429 87 VVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEAL--SKQALVDQLGLE-SITDREVCCYMISCKDSINID 163 (177)
Q Consensus 87 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~--~~~~~~~~~~~~-~~~~~~~~~~~~Sa~~~~~i~ 163 (177)
|+|+++........ .+..+.. .++|+++|+||+|+.+.. ........+... .......+++++||++|.|++
T Consensus 82 VVDa~dg~~~qt~e-~l~~~~~----~~vPiIVViNKiDl~~~~~~~v~~~l~~~~~~~e~~~~~~~iv~vSAktG~GI~ 156 (537)
T 3izy_P 82 VVAADDGVMKQTVE-SIQHAKD----AHVPIVLAINKCDKAEADPEKVKKELLAYDVVCEDYGGDVQAVHVSALTGENMM 156 (537)
T ss_dssp ECBSSSCCCHHHHH-HHHHHHT----TTCCEEECCBSGGGTTTSCCSSSSHHHHTTSCCCCSSSSEEECCCCSSSSCSSH
T ss_pred EEECCCCccHHHHH-HHHHHHH----cCCcEEEEEecccccccchHHHHHHHHhhhhhHHhcCCCceEEEEECCCCCCch
Confidence 99998876554433 3333322 368999999999997532 112222222211 112235689999999999999
Q ss_pred HHHHHHHHHhh
Q 030429 164 AVIDWLIKHSK 174 (177)
Q Consensus 164 ~l~~~l~~~~~ 174 (177)
+++++|...+.
T Consensus 157 eLle~I~~l~~ 167 (537)
T 3izy_P 157 ALAEATIALAE 167 (537)
T ss_dssp HHHHHHHHHHT
T ss_pred hHHHHHHHhhh
Confidence 99999998764
|
| >4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=1.6e-23 Score=160.21 Aligned_cols=151 Identities=23% Similarity=0.272 Sum_probs=104.0
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCC---CCCCCccceeEEEEEeCCEEEEEEecCC--------chhhHHhHHHHhcC
Q 030429 12 EMELSLIGLQNAGKTSLVNTIATGGYS---EDMIPTVGFNMRKVTKGNVTIKLWDLGG--------QRRFRTMWERYCRG 80 (177)
Q Consensus 12 ~~~i~i~G~~~~GKSsli~~l~~~~~~---~~~~~t~~~~~~~~~~~~~~~~~~D~~g--------~~~~~~~~~~~~~~ 80 (177)
..+|+++|.+|||||||+|+|++..+. .....|...........+..+.+||||| ++.+......++..
T Consensus 23 ~~~V~lvG~~nvGKSTL~n~l~~~~~~~v~~~~g~t~~~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~ 102 (456)
T 4dcu_A 23 KPVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAMDE 102 (456)
T ss_dssp CCEEEEECSSSSSHHHHHHHHEEEEEC-----------CEEEECTTCSSCCEEECCCC------CCHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcceeEEEEEEEECCceEEEEECCCCCCcchHHHHHHHHHHHhhHhh
Confidence 468999999999999999999976543 1122233333444556678999999999 77788888888999
Q ss_pred CCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccCHHHHHHHhCcccccCCceeEEEeeecCCC
Q 030429 81 VSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCKDSI 160 (177)
Q Consensus 81 ~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 160 (177)
+|++++|+|+.+. +.....++..++.. .++|+++|+||+|+.+... ...+ .+.......+++||++|.
T Consensus 103 ad~il~VvD~~~~--~~~~d~~l~~~l~~---~~~pvilV~NK~D~~~~~~--~~~e-----~~~lg~~~~~~iSA~~g~ 170 (456)
T 4dcu_A 103 ADVIIFMVNGREG--VTAADEEVAKILYR---TKKPVVLAVNKLDNTEMRA--NIYD-----FYSLGFGEPYPISGTHGL 170 (456)
T ss_dssp CSEEEEEEESSSC--SCHHHHHHHHHHTT---CCSCEEEEEECC-----------CC-----SGGGSSSSEEECCTTTCT
T ss_pred CCEEEEEEeCCCC--CChHHHHHHHHHHH---cCCCEEEEEECccchhhhh--hHHH-----HHHcCCCceEEeeccccc
Confidence 9999999998664 44445566666554 5789999999999864321 1111 111112246799999999
Q ss_pred ChHHHHHHHHHHhh
Q 030429 161 NIDAVIDWLIKHSK 174 (177)
Q Consensus 161 ~i~~l~~~l~~~~~ 174 (177)
|++++++.+.+.+.
T Consensus 171 gv~~L~~~i~~~l~ 184 (456)
T 4dcu_A 171 GLGDLLDAVAEHFK 184 (456)
T ss_dssp THHHHHHHHHTTGG
T ss_pred chHHHHHHHHhhcc
Confidence 99999999988764
|
| >2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.89 E-value=3.8e-24 Score=146.02 Aligned_cols=126 Identities=23% Similarity=0.325 Sum_probs=93.2
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHhcCCCCCC---CCCccceeEEEEEeCCEEEEEEecCCchhhHHhHHHHhcC----C
Q 030429 9 FKQEMELSLIGLQNAGKTSLVNTIATGGYSED---MIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTMWERYCRG----V 81 (177)
Q Consensus 9 ~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~---~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~----~ 81 (177)
....++|+++|++|||||||++++.+..+... ..++.. .......+.+|||||+..+...+..++.. +
T Consensus 45 ~~~~~~i~vvG~~g~GKSsll~~l~~~~~~~~~~~~~~~~~-----~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~ 119 (193)
T 2ged_A 45 GSYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSA-----ADYDGSGVTLVDFPGHVKLRYKLSDYLKTRAKFV 119 (193)
T ss_dssp -CCCCEEEEECCTTSSHHHHHHHHHHSSCC-----------------CCCCTTCSEEEETTCCBSSCCHHHHHHHHGGGE
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhcCCCCcccccCCCcee-----eeecCCeEEEEECCCCchHHHHHHHHHHhhcccC
Confidence 35678999999999999999999998765442 111211 12256789999999998887666666654 8
Q ss_pred CEEEEEEeCC-CCCCHHHHHHHHHHHHcCC---CCCCCcEEEEeeCCCcccccCHHHHHHHh
Q 030429 82 SAILYVVDAA-DRDSVPIARSELHELLMKP---SLSGIPLLVLGNKIDKSEALSKQALVDQL 139 (177)
Q Consensus 82 d~~i~v~d~~-~~~~~~~~~~~~~~~~~~~---~~~~~~~iiv~nK~D~~~~~~~~~~~~~~ 139 (177)
|++++|+|++ ++.++.....|+..+.... ...+.|+++|+||+|+.+....++..+.+
T Consensus 120 ~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~l 181 (193)
T 2ged_A 120 KGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARPPSKIKDAL 181 (193)
T ss_dssp EEEEEEEETTCCHHHHHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCCHHHHHHHH
T ss_pred CEEEEEEECCCCchhHHHHHHHHHHHHhhhhhccccCCCEEEEEEchHhcCCCCHHHHHHHH
Confidence 9999999999 7788888888887776432 12478999999999998876665555544
|
| >2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=2.5e-22 Score=145.88 Aligned_cols=158 Identities=17% Similarity=0.172 Sum_probs=101.7
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcCCCCCCC------CCc----------------------cc---------------
Q 030429 10 KQEMELSLIGLQNAGKTSLVNTIATGGYSEDM------IPT----------------------VG--------------- 46 (177)
Q Consensus 10 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~------~~t----------------------~~--------------- 46 (177)
....+|+++|.+|+|||||+|+|++..+.+.. .++ ..
T Consensus 24 ~~~~~i~vvG~~~~GKSSLln~l~g~~~~~~~~~~~t~~p~~~~~~~~~~~~~~~~~~~g~~~tt~~~~~~~~~~~~~~i 103 (299)
T 2aka_B 24 LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRV 103 (299)
T ss_dssp CCCCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHH
T ss_pred CCCCeEEEEeCCCCCHHHHHHHHHCCCcCCCCCCcccccceEEEEecCCcccchhhhcCCcccCCHHHHHHHHHHHHHHh
Confidence 35679999999999999999999987763211 111 00
Q ss_pred -----------eeEEEEEeCCEEEEEEecCCch-------------hhHHhHHHHhcCCCEEE-EEEeCCCCCCHHHHHH
Q 030429 47 -----------FNMRKVTKGNVTIKLWDLGGQR-------------RFRTMWERYCRGVSAIL-YVVDAADRDSVPIARS 101 (177)
Q Consensus 47 -----------~~~~~~~~~~~~~~~~D~~g~~-------------~~~~~~~~~~~~~d~~i-~v~d~~~~~~~~~~~~ 101 (177)
............+.+|||||.. .+......++..++.++ +|+|+++..+......
T Consensus 104 ~g~~~gi~~~~~~~~~~~~~~~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~ 183 (299)
T 2aka_B 104 TGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALK 183 (299)
T ss_dssp CSSTTCCCSCCEEEEEEETTCCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHHH
T ss_pred cccCCCccccceEEEEeCCCCCCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEEEEEecCCcchhhhHHHH
Confidence 0000011124789999999953 35566677888888666 7999987544433333
Q ss_pred HHHHHHcCCCCCCCcEEEEeeCCCcccccC-HHHHHHHhCcccccCCceeEEEeeecCCCChHHHHHHHHHH
Q 030429 102 ELHELLMKPSLSGIPLLVLGNKIDKSEALS-KQALVDQLGLESITDREVCCYMISCKDSINIDAVIDWLIKH 172 (177)
Q Consensus 102 ~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~ 172 (177)
++..+ .. .+.|+++|+||+|+.+... ..+..+.. .........+++++||++|.|+++++++|.+.
T Consensus 184 ~~~~~-~~---~~~~~i~V~NK~Dl~~~~~~~~~~~~~~-~~~~~~~~~~v~~~SA~~~~gi~~l~~~l~~~ 250 (299)
T 2aka_B 184 IAKEV-DP---QGQRTIGVITKLDLMDEGTDARDVLENK-LLPLRRGYIGVVNRSQKDIDGKKDITAALAAE 250 (299)
T ss_dssp HHHHH-CT---TCSSEEEEEECGGGSCTTCCCHHHHTTC-SSCCTTCEEECCCCCCBCTTSCBCHHHHHHHH
T ss_pred HHHHh-CC---CCCeEEEEEEccccCCCCchHHHHHhCC-cCcCCCCcEEEECCChhhccccccHHHHHHHH
Confidence 33333 22 4689999999999976433 12222110 01111123578899999999999999998763
|
| >3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=1e-22 Score=146.34 Aligned_cols=158 Identities=18% Similarity=0.262 Sum_probs=88.7
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcCCCCC-CC-------CCccceeEEEEE--eCC--EEEEEEecCCch-------hh
Q 030429 10 KQEMELSLIGLQNAGKTSLVNTIATGGYSE-DM-------IPTVGFNMRKVT--KGN--VTIKLWDLGGQR-------RF 70 (177)
Q Consensus 10 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~-~~-------~~t~~~~~~~~~--~~~--~~~~~~D~~g~~-------~~ 70 (177)
...++|+++|.+|+|||||+|++++..... .+ .+|.+....... .++ +.+.+|||||.. .+
T Consensus 6 g~~~~I~vvG~~g~GKSTLin~L~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~liDTpG~~d~~~~~~~~ 85 (274)
T 3t5d_A 6 GFEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCW 85 (274)
T ss_dssp -CEEEEEEEECTTSSHHHHHHHHSSSCC---------------CCCEEEEEEECC--CCEEEEEEECCCCSCCSCCTTTT
T ss_pred ccEEEEEEECCCCCCHHHHHHHHhCCCccccCCCCcccccCCceEEEEEEEEEecCCeEEEEEEEECCCccccccchhhH
Confidence 346899999999999999999987655432 22 455555554433 223 689999999962 22
Q ss_pred HHhH-------HHHhc-------------CCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccc
Q 030429 71 RTMW-------ERYCR-------------GVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEAL 130 (177)
Q Consensus 71 ~~~~-------~~~~~-------------~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~ 130 (177)
.... ..++. .+|+++++++.+..........++..+ .. ++|+++|+||+|+....
T Consensus 86 ~~i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~~~~~~~d~~~l~~l-~~----~~pvi~V~nK~D~~~~~ 160 (274)
T 3t5d_A 86 QPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRL-HE----KVNIIPLIAKADTLTPE 160 (274)
T ss_dssp HHHHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCCSSCCHHHHHHHHHH-TT----TSCEEEEESSGGGSCHH
T ss_pred HHHHHHHHHHHHHHHHhhcccccccccCCceeEEEEEecCCCCCCCHHHHHHHHHH-hc----cCCEEEEEeccCCCCHH
Confidence 2222 22222 267999999876543333333344443 32 68999999999997654
Q ss_pred CHHHHHHHhCcccccCCceeEEEeeecCCCChHHHHHHHHHHh
Q 030429 131 SKQALVDQLGLESITDREVCCYMISCKDSINIDAVIDWLIKHS 173 (177)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~ 173 (177)
+.....+.+.. .....+++++++|++++.|+++++++|.+.+
T Consensus 161 e~~~~~~~i~~-~l~~~~i~v~~~sa~~~~~~~~l~~~l~~~~ 202 (274)
T 3t5d_A 161 ECQQFKKQIMK-EIQEHKIKIYEFPETDDEEENKLVKKIKDRL 202 (274)
T ss_dssp HHHHHHHHHHH-HHHHTTCCCCCC-----------CHHHHHTC
T ss_pred HHHHHHHHHHH-HHHHcCCeEEcCCCCCChhHHHHHHHHhcCC
Confidence 44333332221 1112344688899999999999999998764
|
| >3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.89 E-value=4.2e-22 Score=140.45 Aligned_cols=157 Identities=14% Similarity=0.119 Sum_probs=100.1
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCC----CccceeEEEEEeCCEEEEEEecCCc-----------hhhHHh
Q 030429 9 FKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMI----PTVGFNMRKVTKGNVTIKLWDLGGQ-----------RRFRTM 73 (177)
Q Consensus 9 ~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~----~t~~~~~~~~~~~~~~~~~~D~~g~-----------~~~~~~ 73 (177)
....++|+++|.+|+|||||++++++..+..... .|..........++..+.+|||||. ..+...
T Consensus 26 ~~~~~~i~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~liDTpG~~~~~~~~~~~~~~~~~~ 105 (239)
T 3lxx_A 26 RNSQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSWKETELVVVDTPGIFDTEVPNAETSKEIIRC 105 (239)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHTSCCSCC-------CCSCEEEEEEETTEEEEEEECCSCC-----CHHHHHHHHHH
T ss_pred CCCceEEEEECCCCCCHHHHHHHHcCCCcCccCCCCCceeeeEEEEEEEeCCceEEEEECCCccCCCCCHHHHHHHHHHH
Confidence 3567999999999999999999999877644432 3444555667788899999999993 344444
Q ss_pred HHHHhcCCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCC-CCCCcEEEEeeCCCcccccCHHH-----------HHHHhCc
Q 030429 74 WERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPS-LSGIPLLVLGNKIDKSEALSKQA-----------LVDQLGL 141 (177)
Q Consensus 74 ~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~~iiv~nK~D~~~~~~~~~-----------~~~~~~~ 141 (177)
.....+++|++++|+|+++.... ...++..+..... ....|+++|+||+|+.+....++ +.+..+.
T Consensus 106 ~~~~~~~~~~~l~v~d~~~~~~~--~~~~l~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~i~~~~~~l~~l~~~~~~ 183 (239)
T 3lxx_A 106 ILLTSPGPHALLLVVPLGRYTEE--EHKATEKILKMFGERARSFMILIFTRKDDLGDTNLHDYLREAPEDIQDLMDIFGD 183 (239)
T ss_dssp HHHTTTCCSEEEEEEETTCCSSH--HHHHHHHHHHHHHHHHGGGEEEEEECGGGC------------CHHHHHHHHHHSS
T ss_pred HHhcCCCCcEEEEEeeCCCCCHH--HHHHHHHHHHHhhhhccceEEEEEeCCccCCcccHHHHHHhchHHHHHHHHHcCC
Confidence 45556788999999999765442 2233333322110 02359999999999876543321 2222211
Q ss_pred ccccCCceeEEEeeec-----CCCChHHHHHHHHHHhhh
Q 030429 142 ESITDREVCCYMISCK-----DSINIDAVIDWLIKHSKT 175 (177)
Q Consensus 142 ~~~~~~~~~~~~~Sa~-----~~~~i~~l~~~l~~~~~~ 175 (177)
.++.++.. +..++.++++.+.+++.+
T Consensus 184 --------~~~~~~~~~~~~~~~~~v~~ll~~i~~~~~~ 214 (239)
T 3lxx_A 184 --------RYCALNNKATGAEQEAQRAQLLGLIQRVVRE 214 (239)
T ss_dssp --------SEEECCTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred --------EEEEEECCCCccccHHHHHHHHHHHHHHHHH
Confidence 34555444 346899999999887754
|
| >3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B | Back alignment and structure |
|---|
Probab=99.88 E-value=2e-22 Score=164.94 Aligned_cols=162 Identities=17% Similarity=0.094 Sum_probs=110.8
Q ss_pred cccceeEEEEEcCCCCCHHHHHHHHhcCC-------CC-----------CCCCCccceeEEEEEeCCEEEEEEecCCchh
Q 030429 8 FFKQEMELSLIGLQNAGKTSLVNTIATGG-------YS-----------EDMIPTVGFNMRKVTKGNVTIKLWDLGGQRR 69 (177)
Q Consensus 8 ~~~~~~~i~i~G~~~~GKSsli~~l~~~~-------~~-----------~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~ 69 (177)
..+..++|+++|++++|||||+++|.+.. +. .....|.......+..++..+.+|||||+++
T Consensus 292 ~~k~~lnIvIIGhvDvGKSTLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~~~~~kI~IIDTPGHed 371 (1289)
T 3avx_A 292 RTKPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTPTRHYAHVDCPGHAD 371 (1289)
T ss_dssp CCCCEEEEEEEESTTSSHHHHHHHHHHHHHHHSCC---------------------CCSCEEEECSSCEEEEEECCCHHH
T ss_pred ccCCeeEEEEEcCCCCCHHHHHHHHHhhhccccccccccccccccccccccCceeEEEEEEEEcCCCEEEEEEECCChHH
Confidence 34567999999999999999999998531 00 0111233333344566778999999999999
Q ss_pred hHHhHHHHhcCCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCc-EEEEeeCCCcccccCH-----HHHHHHhCccc
Q 030429 70 FRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIP-LLVLGNKIDKSEALSK-----QALVDQLGLES 143 (177)
Q Consensus 70 ~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-~iiv~nK~D~~~~~~~-----~~~~~~~~~~~ 143 (177)
|...+..++..+|++++|+|+++....+ ...++..+.. .++| +++|+||+|+.+.... ++..+.+....
T Consensus 372 F~~~mi~gas~AD~aILVVDAtdGv~~Q-TrEhL~ll~~----lgIP~IIVVINKiDLv~d~e~le~i~eEi~elLk~~G 446 (1289)
T 3avx_A 372 YVKNMITGAAQMDGAILVVAATDGPMPQ-TREHILLGRQ----VGVPYIIVFLNKCDMVDDEELLELVEMEVRELLSQYD 446 (1289)
T ss_dssp HHHHHHHTSCCCSEEEEEEETTTCSCTT-HHHHHHHHHH----HTCSCEEEEEECCTTCCCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhhCCEEEEEEcCCccCcHH-HHHHHHHHHH----cCCCeEEEEEeecccccchhhHHHHHHHHHHHHHhcc
Confidence 9988888899999999999998865433 3344443332 2577 7899999999753211 12222222222
Q ss_pred ccCCceeEEEeeecCC--------CChHHHHHHHHHHhh
Q 030429 144 ITDREVCCYMISCKDS--------INIDAVIDWLIKHSK 174 (177)
Q Consensus 144 ~~~~~~~~~~~Sa~~~--------~~i~~l~~~l~~~~~ 174 (177)
+....++++++||++| .|++++++.|.+.+.
T Consensus 447 ~~~~~vp~IpvSAktG~ng~~~w~eGI~eLleaL~~~Ip 485 (1289)
T 3avx_A 447 FPGDDTPIVRGSALKALEGDAEWEAKILELAGFLDSYIP 485 (1289)
T ss_dssp SCTTTCCEEECCSTTTTTCCHHHHHHHHHHHHHHHHTSC
T ss_pred ccccceeEEEEEeccCCCCCccccccchhhHhHHhhhcC
Confidence 2223568999999999 468999999987653
|
| >3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.88 E-value=3e-23 Score=163.07 Aligned_cols=153 Identities=13% Similarity=0.089 Sum_probs=104.8
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcCCCCCC---------------------------------CCCccceeEEEEEeCC
Q 030429 10 KQEMELSLIGLQNAGKTSLVNTIATGGYSED---------------------------------MIPTVGFNMRKVTKGN 56 (177)
Q Consensus 10 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~---------------------------------~~~t~~~~~~~~~~~~ 56 (177)
+..++|+++|.+++|||||+++|++...... ...|.......+..++
T Consensus 165 k~~lkV~ivG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~~~~~~~ 244 (611)
T 3izq_1 165 LPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHR 244 (611)
T ss_dssp CCCCEEEEECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCCEEECSS
T ss_pred CCceEEEEEECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeEEEecCC
Confidence 5579999999999999999999985422111 2335555666677888
Q ss_pred EEEEEEecCCchhhHHhHHHHhcCCCEEEEEEeCCCCC---CH---HHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccc
Q 030429 57 VTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAADRD---SV---PIARSELHELLMKPSLSGIPLLVLGNKIDKSEAL 130 (177)
Q Consensus 57 ~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~---~~---~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~ 130 (177)
..+.+|||||+++|...+..++..+|++++|+|+++.. ++ ......+... ... ...|+++|+||+|+.+..
T Consensus 245 ~~~~iiDTPG~e~f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l~~~-~~l--gi~~iIVVvNKiDl~~~~ 321 (611)
T 3izq_1 245 ANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLA-SSL--GIHNLIIAMNKMDNVDWS 321 (611)
T ss_dssp CEEEEEECCSSSCHHHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHHHHHHH-HTT--TCCEEEEEEECTTTTTTC
T ss_pred ceEEEEECCCCcccHHHHHHHHhhcCceEEEEECCCCcccccchhhhHHHHHHHHH-HHc--CCCeEEEEEecccccchh
Confidence 99999999999999988888999999999999997631 11 1222222222 221 234699999999997621
Q ss_pred --CHHHHHHHh----CcccccCCceeEEEeeecCCCChHHH
Q 030429 131 --SKQALVDQL----GLESITDREVCCYMISCKDSINIDAV 165 (177)
Q Consensus 131 --~~~~~~~~~----~~~~~~~~~~~~~~~Sa~~~~~i~~l 165 (177)
..++..+.+ ....+....++++++||++|.|++++
T Consensus 322 ~~~~~ei~~~l~~~l~~~g~~~~~~~~i~vSA~tG~gI~el 362 (611)
T 3izq_1 322 QQRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKI 362 (611)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCGGGCEEEECCTTTCTTTSSC
T ss_pred HHHHHHHHHHHHHHHHhhcccccCccEEeeecccCCCcccc
Confidence 112222222 11112223568999999999999865
|
| >1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=2.4e-22 Score=157.27 Aligned_cols=159 Identities=21% Similarity=0.249 Sum_probs=106.9
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhcCCCCC----CCCCccceeEEEEE----------------eCCEEEEEEecCCchhh
Q 030429 11 QEMELSLIGLQNAGKTSLVNTIATGGYSE----DMIPTVGFNMRKVT----------------KGNVTIKLWDLGGQRRF 70 (177)
Q Consensus 11 ~~~~i~i~G~~~~GKSsli~~l~~~~~~~----~~~~t~~~~~~~~~----------------~~~~~~~~~D~~g~~~~ 70 (177)
+..+|+++|++++|||||++++.+..+.. ...++.+....... .....+++|||||+..|
T Consensus 4 r~~~V~IvGh~d~GKTTLl~~L~~~~v~~~e~ggiT~~ig~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~liDTPGhe~F 83 (594)
T 1g7s_A 4 RSPIVSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEAF 83 (594)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHHHHSCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSCC
T ss_pred CCcEEEEECCCCCcHHHHHHHHhcccCccccCCceecccCeEEEeechhhhhccccccccccccccCCEEEEECCCcHHH
Confidence 46799999999999999999998654322 12233333333211 11236999999999999
Q ss_pred HHhHHHHhcCCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccC--------------HH---
Q 030429 71 RTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALS--------------KQ--- 133 (177)
Q Consensus 71 ~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~--------------~~--- 133 (177)
......++..+|++++|+|+++.-..... ..+..+.. .++|+++|+||+|+.+... .+
T Consensus 84 ~~~~~r~~~~aD~aILVvDa~~Gv~~qT~-e~l~~l~~----~~vPiIVViNKiDl~~~~~~~~~~~~~e~sa~~~~~v~ 158 (594)
T 1g7s_A 84 TTLRKRGGALADLAILIVDINEGFKPQTQ-EALNILRM----YRTPFVVAANKIDRIHGWRVHEGRPFMETFSKQDIQVQ 158 (594)
T ss_dssp TTSBCSSSBSCSEEEEEEETTTCCCHHHH-HHHHHHHH----TTCCEEEEEECGGGSTTCCCCTTCCHHHHHTTSCHHHH
T ss_pred HHHHHHHHhhCCEEEEEEECCCCccHhHH-HHHHHHHH----cCCeEEEEecccccccccccccCCchHHHHHHhHHHHH
Confidence 88877788899999999999885332222 22222322 3789999999999964211 00
Q ss_pred --------HHHHHhCcccc----------cCCceeEEEeeecCCCChHHHHHHHHHHhh
Q 030429 134 --------ALVDQLGLESI----------TDREVCCYMISCKDSINIDAVIDWLIKHSK 174 (177)
Q Consensus 134 --------~~~~~~~~~~~----------~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~ 174 (177)
+..+.+..... .....+++++||++|.|+++|+++|...+.
T Consensus 159 ~~~~e~i~ei~~~L~e~gl~~e~~~~l~~~~~~vpvv~vSA~tG~GI~eLl~~I~~~~~ 217 (594)
T 1g7s_A 159 QKLDTKVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPELLTMLMGLAQ 217 (594)
T ss_dssp HHHHHHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCcchHHHHHHHhccCcceEEEEeccCCCCchhHHHHHHhhcc
Confidence 11111211110 124568999999999999999999988654
|
| >1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A | Back alignment and structure |
|---|
Probab=99.87 E-value=1.2e-22 Score=155.30 Aligned_cols=152 Identities=16% Similarity=0.192 Sum_probs=104.1
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcC--CCCC-------------------------------CCCCccceeEEEEEeCC
Q 030429 10 KQEMELSLIGLQNAGKTSLVNTIATG--GYSE-------------------------------DMIPTVGFNMRKVTKGN 56 (177)
Q Consensus 10 ~~~~~i~i~G~~~~GKSsli~~l~~~--~~~~-------------------------------~~~~t~~~~~~~~~~~~ 56 (177)
+..++|+++|.+++|||||+++|++. .+.. ....|.......+..++
T Consensus 5 ~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi~~~~~~~~~~~ 84 (458)
T 1f60_A 5 KSHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFETPK 84 (458)
T ss_dssp CEEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEECSS
T ss_pred CceeEEEEEcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcEEEEEEEEEecCC
Confidence 45689999999999999999999853 1211 12345566666777888
Q ss_pred EEEEEEecCCchhhHHhHHHHhcCCCEEEEEEeCCCCC---CHH---HHHHHHHHHHcCCCCCCCc-EEEEeeCCCcccc
Q 030429 57 VTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAADRD---SVP---IARSELHELLMKPSLSGIP-LLVLGNKIDKSEA 129 (177)
Q Consensus 57 ~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~---~~~---~~~~~~~~~~~~~~~~~~~-~iiv~nK~D~~~~ 129 (177)
..+.+|||||+++|...+..++..+|++++|+|+++.. +|+ .....+..... .++| +++|+||+|+.+.
T Consensus 85 ~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~~~~~~~~~----~~v~~iivviNK~Dl~~~ 160 (458)
T 1f60_A 85 YQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFT----LGVRQLIVAVNKMDSVKW 160 (458)
T ss_dssp EEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHH----TTCCEEEEEEECGGGGTT
T ss_pred ceEEEEECCCcHHHHHHHHhhhhhCCEEEEEEeCCcCccccccCcchhHHHHHHHHHH----cCCCeEEEEEEccccccC
Confidence 99999999999999998888999999999999997642 111 22333332222 2455 9999999999742
Q ss_pred --cCHHHHHHHhC----cccccCCceeEEEeeecCCCChHHH
Q 030429 130 --LSKQALVDQLG----LESITDREVCCYMISCKDSINIDAV 165 (177)
Q Consensus 130 --~~~~~~~~~~~----~~~~~~~~~~~~~~Sa~~~~~i~~l 165 (177)
+..++..+.+. ...+....++++++||++|.|++++
T Consensus 161 ~~~~~~~i~~~~~~~l~~~g~~~~~~~~i~vSA~~g~nv~~~ 202 (458)
T 1f60_A 161 DESRFQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMIEA 202 (458)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTTTBC
T ss_pred CHHHHHHHHHHHHHHHHHcCCCccCceEEEeecccCcCcccc
Confidence 11122222221 1111112468999999999998743
|
| >1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.87 E-value=7.4e-24 Score=162.31 Aligned_cols=157 Identities=24% Similarity=0.275 Sum_probs=108.0
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCC--CccceeEEEEEeCCEEEEEEecCCchhhHHhHHHHhcCCCEEEEE
Q 030429 10 KQEMELSLIGLQNAGKTSLVNTIATGGYSEDMI--PTVGFNMRKVTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYV 87 (177)
Q Consensus 10 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~--~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v 87 (177)
++..+|+++|++++|||||++++.+..+..... .|.......+..++..+.+|||||++.|...+...+..+|++++|
T Consensus 2 ~R~~~V~IvGhvd~GKTTLl~~L~~~~v~~~e~~GIT~~i~~~~v~~~~~~i~~iDTPGhe~f~~~~~~~~~~aD~aILV 81 (501)
T 1zo1_I 2 PRAPVVTIMGHVDHGKTSLLEYIRSTKVASGEAGGITQHIGAYHVETENGMITFLDTPGHAAFTSMRARGAQATDIVVLV 81 (501)
T ss_dssp CCCCCEEEEESTTSSSHHHHHHHHHHHHSBTTBCCCCCCSSCCCCCTTSSCCCEECCCTTTCCTTSBCSSSBSCSSEEEE
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHcCCCccccCCCeeEeEEEEEEEECCEEEEEEECCCcHHHHHHHHHHHhhCCEEEEE
Confidence 467899999999999999999998654432221 222233333445667899999999999988887888899999999
Q ss_pred EeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccCHHHHHHHhCcccc----cCCceeEEEeeecCCCChH
Q 030429 88 VDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESI----TDREVCCYMISCKDSINID 163 (177)
Q Consensus 88 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~Sa~~~~~i~ 163 (177)
+|+++...... ...+..... .+.|+++++||+|+.+... ++..+.+..... .....+++++||++|.|++
T Consensus 82 Vda~~g~~~qT-~e~l~~~~~----~~vPiIVviNKiDl~~~~~-~~v~~~l~~~~~~~~~~~~~~~~v~vSAktG~gI~ 155 (501)
T 1zo1_I 82 VAADDGVMPQT-IEAIQHAKA----AQVPVVVAVNKIDKPEADP-DRVKNELSQYGILPEEWGGESQFVHVSAKAGTGID 155 (501)
T ss_dssp EETTTBSCTTT-HHHHHHHHH----TTCCEEEEEECSSSSTTCC-CCTTCCCCCCCCCTTCCSSSCEEEECCTTTCTTCT
T ss_pred eecccCccHHH-HHHHHHHHh----cCceEEEEEEeccccccCH-HHHHHHHHHhhhhHHHhCCCccEEEEeeeeccCcc
Confidence 99987432222 222222222 3689999999999975321 111122211111 1123689999999999999
Q ss_pred HHHHHHHHH
Q 030429 164 AVIDWLIKH 172 (177)
Q Consensus 164 ~l~~~l~~~ 172 (177)
+++++|...
T Consensus 156 eLle~I~~~ 164 (501)
T 1zo1_I 156 ELLDAILLQ 164 (501)
T ss_dssp THHHHTTTT
T ss_pred hhhhhhhhh
Confidence 999998753
|
| >1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.87 E-value=1.4e-21 Score=134.94 Aligned_cols=160 Identities=19% Similarity=0.184 Sum_probs=99.5
Q ss_pred ccccceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeE--EEEEeCCEEEEEEecCCchh----------hHHhH
Q 030429 7 LFFKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNM--RKVTKGNVTIKLWDLGGQRR----------FRTMW 74 (177)
Q Consensus 7 ~~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~--~~~~~~~~~~~~~D~~g~~~----------~~~~~ 74 (177)
+......+|+++|++|||||||++++++..+.....++.+... ..+..++ .+.+||+||... +....
T Consensus 21 ~~~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~-~~~l~Dt~G~~~~~~~~~~~~~~~~~~ 99 (210)
T 1pui_A 21 LPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVAD-GKRLVDLPGYGYAEVPEEMKRKWQRAL 99 (210)
T ss_dssp SSCSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEET-TEEEEECCCCC------CCHHHHHHHH
T ss_pred CCCCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEecC-CEEEEECcCCcccccCHHHHHHHHHHH
Confidence 5677889999999999999999999986653322233333221 1222223 578999999732 33333
Q ss_pred HHHh---cCCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccCHH----HHHHHhCcccccCC
Q 030429 75 ERYC---RGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQ----ALVDQLGLESITDR 147 (177)
Q Consensus 75 ~~~~---~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~----~~~~~~~~~~~~~~ 147 (177)
..++ ..++++++++|++++.+.... .+..+... .+.|++++.||+|+.+..+.+ ...+.+.. ...
T Consensus 100 ~~~~~~~~~~~~~~~v~d~~~~~~~~~~--~~~~~~~~---~~~~~~~v~nK~D~~s~~~~~~~~~~~~~~~~~---~~~ 171 (210)
T 1pui_A 100 GEYLEKRQSLQGLVVLMDIRHPLKDLDQ--QMIEWAVD---SNIAVLVLLTKADKLASGARKAQLNMVREAVLA---FNG 171 (210)
T ss_dssp HHHHHHCTTEEEEEEEEETTSCCCHHHH--HHHHHHHH---TTCCEEEEEECGGGSCHHHHHHHHHHHHHHHGG---GCS
T ss_pred HHHHHhhhcccEEEEEEECCCCCchhHH--HHHHHHHH---cCCCeEEEEecccCCCchhHHHHHHHHHHHHHh---cCC
Confidence 3444 568999999999887665321 12222222 368999999999987643222 12222211 112
Q ss_pred ceeEEEeeecCCCChHHHHHHHHHHhhh
Q 030429 148 EVCCYMISCKDSINIDAVIDWLIKHSKT 175 (177)
Q Consensus 148 ~~~~~~~Sa~~~~~i~~l~~~l~~~~~~ 175 (177)
...++++|++++.|++++++.|.+.+.+
T Consensus 172 ~~~~~~~Sal~~~~~~~l~~~l~~~~~~ 199 (210)
T 1pui_A 172 DVQVETFSSLKKQGVDKLRQKLDTWFSE 199 (210)
T ss_dssp CEEEEECBTTTTBSHHHHHHHHHHHHC-
T ss_pred CCceEEEeecCCCCHHHHHHHHHHHHhh
Confidence 4578899999999999999999887654
|
| >1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ... | Back alignment and structure |
|---|
Probab=99.87 E-value=4.3e-21 Score=152.92 Aligned_cols=124 Identities=19% Similarity=0.174 Sum_probs=92.5
Q ss_pred CceeecccccceeEEEEEcCCCCCHHHHHHHHhcC--CC------CC------------CCCCccceeEEEEEeCCEEEE
Q 030429 1 MYLHISLFFKQEMELSLIGLQNAGKTSLVNTIATG--GY------SE------------DMIPTVGFNMRKVTKGNVTIK 60 (177)
Q Consensus 1 m~~~~~~~~~~~~~i~i~G~~~~GKSsli~~l~~~--~~------~~------------~~~~t~~~~~~~~~~~~~~~~ 60 (177)
|.........+..+|+++|++|+|||||+++|+.. .+ .. ....|.......+..+++.++
T Consensus 1 M~~~l~~~~~~~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~~~~~~~~~~~~~i~ 80 (691)
T 1dar_A 1 MAVKVEYDLKRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWKDHRIN 80 (691)
T ss_dssp CCTTCCCCGGGEEEEEEEECTTSCHHHHHHHHHHHHCC----------------------------CCEEEEEETTEEEE
T ss_pred CCccccCccccccEEEEECCCCCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhcccccccceEEEEECCeEEE
Confidence 44444455677899999999999999999999831 11 00 223455555666777899999
Q ss_pred EEecCCchhhHHhHHHHhcCCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccc
Q 030429 61 LWDLGGQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEA 129 (177)
Q Consensus 61 ~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~ 129 (177)
+|||||+.+|......++..+|++++|+|+++.........|. .+... +.|+++|+||+|+...
T Consensus 81 liDTPG~~df~~~~~~~l~~aD~~ilVvDa~~g~~~~t~~~~~-~~~~~----~~p~ivviNKiD~~~~ 144 (691)
T 1dar_A 81 IIDTPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWR-QAEKY----KVPRIAFANKMDKTGA 144 (691)
T ss_dssp EECCCSSTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHH-HHHHT----TCCEEEEEECTTSTTC
T ss_pred EEECcCccchHHHHHHHHHHCCEEEEEEECCCCcchhhHHHHH-HHHHc----CCCEEEEEECCCcccC
Confidence 9999999999998899999999999999999987776655443 33332 7899999999998764
|
| >2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W* | Back alignment and structure |
|---|
Probab=99.87 E-value=1e-20 Score=146.55 Aligned_cols=117 Identities=21% Similarity=0.246 Sum_probs=85.0
Q ss_pred cccceeEEEEEcCCCCCHHHHHHHHhcCC--CC----------------------CCCCCccceeEEEEEeCCEEEEEEe
Q 030429 8 FFKQEMELSLIGLQNAGKTSLVNTIATGG--YS----------------------EDMIPTVGFNMRKVTKGNVTIKLWD 63 (177)
Q Consensus 8 ~~~~~~~i~i~G~~~~GKSsli~~l~~~~--~~----------------------~~~~~t~~~~~~~~~~~~~~~~~~D 63 (177)
...+..+|+++|++|+|||||+++|+... .. .....+.......+..+++.+++||
T Consensus 9 ~~~~~~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~liD 88 (529)
T 2h5e_A 9 EVAKRRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPYHDCLVNLLD 88 (529)
T ss_dssp HHHTEEEEEEEECTTSSHHHHHHHHHHSCC-------------------------------CCTTEEEEEETTEEEEEEC
T ss_pred hhcCCCEEEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEEEEECCeEEEEEE
Confidence 34577999999999999999999998531 10 0111133334455677889999999
Q ss_pred cCCchhhHHhHHHHhcCCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccc
Q 030429 64 LGGQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEA 129 (177)
Q Consensus 64 ~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~ 129 (177)
|||+.+|......++..+|++++|+|+++..... ....+... . ..++|+++|+||+|+...
T Consensus 89 TPG~~df~~~~~~~l~~aD~~IlVvDa~~g~~~~-t~~~~~~~-~---~~~ipiivviNK~Dl~~~ 149 (529)
T 2h5e_A 89 TPGHEDFSEDTYRTLTAVDCCLMVIDAAKGVEDR-TRKLMEVT-R---LRDTPILTFMNKLDRDIR 149 (529)
T ss_dssp CCCSTTCCHHHHHGGGGCSEEEEEEETTTCSCHH-HHHHHHHH-T---TTTCCEEEEEECTTSCCS
T ss_pred CCCChhHHHHHHHHHHHCCEEEEEEeCCccchHH-HHHHHHHH-H---HcCCCEEEEEcCcCCccc
Confidence 9999999888888999999999999998864322 22233322 2 247899999999999764
|
| >1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A | Back alignment and structure |
|---|
Probab=99.87 E-value=1.1e-22 Score=155.89 Aligned_cols=155 Identities=20% Similarity=0.193 Sum_probs=90.6
Q ss_pred cccceeEEEEEcCCCCCHHHHHHHHhc--CCCC-------------------------------CCCCCccceeEEEEEe
Q 030429 8 FFKQEMELSLIGLQNAGKTSLVNTIAT--GGYS-------------------------------EDMIPTVGFNMRKVTK 54 (177)
Q Consensus 8 ~~~~~~~i~i~G~~~~GKSsli~~l~~--~~~~-------------------------------~~~~~t~~~~~~~~~~ 54 (177)
..+..++|+++|.+++|||||+++|+. +.+. +....|+......+..
T Consensus 39 ~~k~~~~i~iiG~vd~GKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~~~~~~~~~ 118 (467)
T 1r5b_A 39 YGKEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFET 118 (467)
T ss_dssp SCCEEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEEC
T ss_pred cCCCeeEEEEEECCCCCHHHHHHHHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEEeeeEEEec
Confidence 346679999999999999999999974 1111 0123344444455667
Q ss_pred CCEEEEEEecCCchhhHHhHHHHhcCCCEEEEEEeCCCCC---CHH---HHHHHHHHHHcCCCCCCCc-EEEEeeCCCcc
Q 030429 55 GNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAADRD---SVP---IARSELHELLMKPSLSGIP-LLVLGNKIDKS 127 (177)
Q Consensus 55 ~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~---~~~---~~~~~~~~~~~~~~~~~~~-~iiv~nK~D~~ 127 (177)
++..+.+|||||+++|...+...+..+|++++|+|+++.. +|+ .....+..... .++| +++|+||+|+.
T Consensus 119 ~~~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~~~----~~vp~iivviNK~Dl~ 194 (467)
T 1r5b_A 119 EHRRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLART----QGINHLVVVINKMDEP 194 (467)
T ss_dssp SSEEEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHH----TTCSSEEEEEECTTST
T ss_pred CCeEEEEEECCCcHHHHHHHHhhcccCCEEEEEEeCCcCccccccCCCCcHHHHHHHHHH----cCCCEEEEEEECccCC
Confidence 7899999999999999988888899999999999998752 222 12222222222 2566 99999999996
Q ss_pred ccc-C---HH----HHHHHhCcc-ccc-CCceeEEEeeecCCCChHHHH
Q 030429 128 EAL-S---KQ----ALVDQLGLE-SIT-DREVCCYMISCKDSINIDAVI 166 (177)
Q Consensus 128 ~~~-~---~~----~~~~~~~~~-~~~-~~~~~~~~~Sa~~~~~i~~l~ 166 (177)
+.. . .+ ++.+.+... .+. ...++++++||++|.|+++++
T Consensus 195 ~~~~~~~~~~~i~~e~~~~l~~~~g~~~~~~~~~i~vSA~~g~~i~~l~ 243 (467)
T 1r5b_A 195 SVQWSEERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRV 243 (467)
T ss_dssp TCSSCHHHHHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSCC
T ss_pred CccccHHHHHHHHHHHHHHHHHhcCCCccCCceEEeccccccccccccc
Confidence 421 1 11 122222111 111 125689999999999998754
|
| >2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=6.8e-21 Score=151.88 Aligned_cols=163 Identities=17% Similarity=0.169 Sum_probs=106.8
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHhcCCCCC-CCCCccc-ee----------EEEE------------------------
Q 030429 9 FKQEMELSLIGLQNAGKTSLVNTIATGGYSE-DMIPTVG-FN----------MRKV------------------------ 52 (177)
Q Consensus 9 ~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~-~~~~t~~-~~----------~~~~------------------------ 52 (177)
.+..++|+++|.+|+|||||+|+|++..+.. ...+++. .. ...+
T Consensus 66 ~~~~~~V~VvG~~naGKSSLlNaLlg~~~~~v~~~p~T~~~~~i~~g~~~~~t~~~~~g~~~~~~~~~~i~~~~~i~~~~ 145 (695)
T 2j69_A 66 QQGVFRLLVLGDMKRGKSTFLNALIGENLLPSDVNPCTAVLTVLRYGPEKKVTIHFNDGKSPQQLDFQNFKYKYTIDPAE 145 (695)
T ss_dssp HHCCEEEEEECCTTSCHHHHHHHHHTSSCSCCCCCTTTCCCEEEEECSSCEEEEEESSSCCCCEEEHHHHHHHSCCCHHH
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCCCCccceEEEEeCCCCeEEEEEcCCCcccccChhhhhhhhcCCHHH
Confidence 3567999999999999999999999766432 2222221 00 0000
Q ss_pred --------------------EeCC----EEEEEEecCCchhh---HHhHHHHhcCCCEEEEEEeCCCCCCHHHHHHHHHH
Q 030429 53 --------------------TKGN----VTIKLWDLGGQRRF---RTMWERYCRGVSAILYVVDAADRDSVPIARSELHE 105 (177)
Q Consensus 53 --------------------~~~~----~~~~~~D~~g~~~~---~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~ 105 (177)
.... ..+.+|||||.... ......++..+|++++|+|++++.+..+...+...
T Consensus 146 ~~~l~~~~~~~~~~v~~i~i~~p~~~l~~~l~LiDTPGl~~~~~~~~~~~~~i~~aD~vL~Vvda~~~~s~~e~~~l~~~ 225 (695)
T 2j69_A 146 AKKLEQEKKQAFPDVDYAVVEYPLTLLQKGIEIVDSPGLNDTEARNELSLGYVNNCHAILFVMRASQPCTLGERRYLENY 225 (695)
T ss_dssp HHHHHTSSCCSCTTEEEEEEEECCHHHHTTEEEEECCCHHHHHTCHHHHTHHHHSSSEEEEEEETTSTTCHHHHHHHHHH
T ss_pred HHHHhhccccccccceEEEEEccchhccCCeEEEECCCCCchhhHHHHHHHHHHhCCEEEEEEeCCCccchhHHHHHHHH
Confidence 0000 35899999996653 34555678899999999999988777765544333
Q ss_pred HHcCCCCCCCcEEEEeeCCCccccc-----CHHH-------HH----HHhCccc----ccCCceeEEEeeec--------
Q 030429 106 LLMKPSLSGIPLLVLGNKIDKSEAL-----SKQA-------LV----DQLGLES----ITDREVCCYMISCK-------- 157 (177)
Q Consensus 106 ~~~~~~~~~~~~iiv~nK~D~~~~~-----~~~~-------~~----~~~~~~~----~~~~~~~~~~~Sa~-------- 157 (177)
+ .. .+.|+++|+||+|+.... +.++ +. ..+.... +.....+++++||+
T Consensus 226 l-~~---~~~~iiiVlNK~Dl~~~~~~~~ee~e~l~~~~~~i~~~~~~~l~~~~~~~g~~~~~~~v~~vSAk~al~~~~~ 301 (695)
T 2j69_A 226 I-KG---RGLTVFFLVNAWDQVRESLIDPDDVEELQASENRLRQVFNANLAEYCTVEGQNIYDERVFELSSIQALRRRLK 301 (695)
T ss_dssp T-TT---SCCCEEEEEECGGGGGGGCSSTTCHHHHHHHHHHHHHHHHHHHGGGGBSSSCBCGGGTEEECCHHHHHHHHHH
T ss_pred H-Hh---hCCCEEEEEECcccccccccChhhHHHHHHHHHHHHHHHHHHHHHhhcccccccCCCcEEEEeChHHHHhhcc
Confidence 3 22 357899999999986542 1111 11 1121110 00123468999999
Q ss_pred ------CCCChHHHHHHHHHHhhh
Q 030429 158 ------DSINIDAVIDWLIKHSKT 175 (177)
Q Consensus 158 ------~~~~i~~l~~~l~~~~~~ 175 (177)
++.|++++++.|.+.+.+
T Consensus 302 ~~~~~~~~~Gi~~L~~~L~~~l~~ 325 (695)
T 2j69_A 302 NPQADLDGTGFPKFMDSLNTFLTR 325 (695)
T ss_dssp CTTCCCTTSSHHHHHHHHHHHHHH
T ss_pred CchhhhhccCHHHHHHHHHHHHHH
Confidence 999999999999887653
|
| >1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B* | Back alignment and structure |
|---|
Probab=99.86 E-value=4.6e-21 Score=140.17 Aligned_cols=161 Identities=19% Similarity=0.148 Sum_probs=98.5
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcCCCC-CCCCCccc-e---eEE----------------------------------
Q 030429 10 KQEMELSLIGLQNAGKTSLVNTIATGGYS-EDMIPTVG-F---NMR---------------------------------- 50 (177)
Q Consensus 10 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~-~~~~~t~~-~---~~~---------------------------------- 50 (177)
....+|+++|.+|+|||||+|++++..+. ........ . ...
T Consensus 22 ~~~~~I~vvG~~~~GKSTlln~l~g~~~lp~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (315)
T 1jwy_B 22 LDLPQIVVVGSQSSGKSSVLENIVGRDFLPRGSGIVTRRPLILQLTHLPIADDGSQTQEWGEFLHKPNDMFYDFSEIREE 101 (315)
T ss_dssp TCCCEEEEEECSSSSHHHHHHHHHTSCCCCC--------CEEEEEEECCCCTTSCCCCCEEEESSSTTCCBCCTHHHHHH
T ss_pred CCCCeEEEEcCCCCCHHHHHHHHHCCCcCCCCCCceeeeeEEEEEEeCCCcccccchhhhhhhhcccccccCCHHHHHHH
Confidence 34579999999999999999999987652 21110000 0 000
Q ss_pred -----------------------EEEeCCEEEEEEecCCchh-------------hHHhHHHHhcCCCEEEEEEeCCCCC
Q 030429 51 -----------------------KVTKGNVTIKLWDLGGQRR-------------FRTMWERYCRGVSAILYVVDAADRD 94 (177)
Q Consensus 51 -----------------------~~~~~~~~~~~~D~~g~~~-------------~~~~~~~~~~~~d~~i~v~d~~~~~ 94 (177)
-.......+.+|||||..+ +......++..+|++++|+|.++..
T Consensus 102 i~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~~~~ 181 (315)
T 1jwy_B 102 IIRDTDRMTGKNKGISAQPINLKIYSPHVVNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTD 181 (315)
T ss_dssp HHHHCC--------CCCCCEEEEEEETTSCSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSC
T ss_pred HHHHHHHhcCCCCCccCccEEEEEecCCCCCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEecCcc
Confidence 0112346799999999643 4455667889999999999985433
Q ss_pred CHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccCHHHHHHHhCccccc--CCceeEEEeeecC---CCChHHHHHHH
Q 030429 95 SVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESIT--DREVCCYMISCKD---SINIDAVIDWL 169 (177)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~Sa~~---~~~i~~l~~~l 169 (177)
........+...+.. .+.|+++|+||+|+.+... ...+.+...... ....++..+|+.+ +.|++++++.+
T Consensus 182 ~~~~~~~~i~~~~~~---~~~~~i~v~NK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~v~~~sa~~~~~~~gv~~l~~~~ 256 (315)
T 1jwy_B 182 LANSDALQLAKEVDP---EGKRTIGVITKLDLMDKGT--DAMEVLTGRVIPLTLGFIGVINRSQEDIIAKKSIRESLKSE 256 (315)
T ss_dssp STTCSHHHHHHHHCS---SCSSEEEEEECTTSSCSSC--CCHHHHTTSSSCCTTCEEECCCCCHHHHSSSCCHHHHHHHH
T ss_pred hhhhHHHHHHHHhCC---CCCcEEEEEcCcccCCcch--HHHHHHhCCCccCCCCeEEEecCChhhhccCCCHHHHHHHH
Confidence 221111122222232 4689999999999976543 112222211111 2233445566666 89999999998
Q ss_pred HHHhhh
Q 030429 170 IKHSKT 175 (177)
Q Consensus 170 ~~~~~~ 175 (177)
.+.+..
T Consensus 257 ~~~~~~ 262 (315)
T 1jwy_B 257 ILYFKN 262 (315)
T ss_dssp HHHHHT
T ss_pred HHHHhC
Confidence 887754
|
| >3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=99.86 E-value=3.6e-23 Score=162.16 Aligned_cols=161 Identities=19% Similarity=0.144 Sum_probs=90.3
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHhcCC--CC-------------------------------CCCCCccceeEEEEEeC
Q 030429 9 FKQEMELSLIGLQNAGKTSLVNTIATGG--YS-------------------------------EDMIPTVGFNMRKVTKG 55 (177)
Q Consensus 9 ~~~~~~i~i~G~~~~GKSsli~~l~~~~--~~-------------------------------~~~~~t~~~~~~~~~~~ 55 (177)
.+..++|+++|.+++|||||+++|+... .. .....|.......+..+
T Consensus 174 ~k~~~~I~iiG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~~~~~~~~ 253 (592)
T 3mca_A 174 PKPVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTTFESD 253 (592)
T ss_dssp CCCEEEEEEECCSSSTHHHHHHHHHHHHHCC-------------------------------------------------
T ss_pred CCCccEEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEEeeEEEEEeC
Confidence 4567899999999999999999996310 00 01122444444455566
Q ss_pred CEEEEEEecCCchhhHHhHHHHhcCCCEEEEEEeCCCCC---CH---HHHHHHHHHHHcCCCCCCCc-EEEEeeCCCccc
Q 030429 56 NVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAADRD---SV---PIARSELHELLMKPSLSGIP-LLVLGNKIDKSE 128 (177)
Q Consensus 56 ~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~---~~---~~~~~~~~~~~~~~~~~~~~-~iiv~nK~D~~~ 128 (177)
+..+.+|||||+.+|...+..++..+|++++|+|+++.. .+ ......+..+... ++| +++|+||+|+.+
T Consensus 254 ~~~i~iiDTPGh~~f~~~~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l~~~~~l----gip~iIvviNKiDl~~ 329 (592)
T 3mca_A 254 KKIYEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQNNFERGFLENGQTREHAYLLRAL----GISEIVVSVNKLDLMS 329 (592)
T ss_dssp -----CCEEESSSEEEEECCC-------CCSEEEEEECCSSTTSCSCSSHHHHHHHHHHS----SCCCEEEEEECGGGGT
T ss_pred CeEEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCccccccccchHHHHHHHHHHHc----CCCeEEEEEecccccc
Confidence 789999999999999877777888999999999998643 11 1222222222222 454 999999999976
Q ss_pred c--cCHH----HHHHHh-CcccccCCceeEEEeeecCCCChH--------------HHHHHHHHHh
Q 030429 129 A--LSKQ----ALVDQL-GLESITDREVCCYMISCKDSINID--------------AVIDWLIKHS 173 (177)
Q Consensus 129 ~--~~~~----~~~~~~-~~~~~~~~~~~~~~~Sa~~~~~i~--------------~l~~~l~~~~ 173 (177)
. ...+ ++.+.+ ....+....++++++||++|.|++ .|++.|...+
T Consensus 330 ~~~~~~~~i~~el~~~l~~~~g~~~~~~~ii~iSA~~G~gI~e~~~~~~~~w~~g~~Lle~l~~~~ 395 (592)
T 3mca_A 330 WSEDRFQEIKNIVSDFLIKMVGFKTSNVHFVPISAISGTNLIQKDSSDLYKWYKGPTLLSALDQLV 395 (592)
T ss_dssp TCHHHHHHHHHHHHHHHTTTSCCCGGGEEEEEECSSSCSSSCSCCCCGGGGTCCSCCHHHHHHTSC
T ss_pred ccHHHHHHHHHHHHHHHHHhhCCCccceEEEEEecccCcccccccccccccccchHHHHHHHHhhc
Confidence 2 1122 233333 222233345689999999999998 7888876643
|
| >2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=6.8e-20 Score=145.57 Aligned_cols=116 Identities=21% Similarity=0.142 Sum_probs=86.7
Q ss_pred ccccceeEEEEEcCCCCCHHHHHHHHhcCCCC-------------CC-------CCCccceeEEEEEeCCEEEEEEecCC
Q 030429 7 LFFKQEMELSLIGLQNAGKTSLVNTIATGGYS-------------ED-------MIPTVGFNMRKVTKGNVTIKLWDLGG 66 (177)
Q Consensus 7 ~~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~-------------~~-------~~~t~~~~~~~~~~~~~~~~~~D~~g 66 (177)
+..++..+|+++|+.|+|||||++++++.... .. ...+.......+...++.+++|||||
T Consensus 4 ~~~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~~nliDTpG 83 (665)
T 2dy1_A 4 EGGAMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDAPG 83 (665)
T ss_dssp --CCCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEECCC
T ss_pred CccCCCcEEEEECCCCChHHHHHHHHHHhcCCCCccceecCCcccccCCHHHHhcCCeEEecceEEeeCCEEEEEEeCCC
Confidence 44567789999999999999999999842211 00 11233344555667889999999999
Q ss_pred chhhHHhHHHHhcCCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcc
Q 030429 67 QRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKS 127 (177)
Q Consensus 67 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~ 127 (177)
+.+|......++..+|++++|+|+++..... ...++...... ++|+++|+||+|+.
T Consensus 84 ~~~f~~~~~~~l~~ad~~ilVvD~~~g~~~q-t~~~~~~~~~~----~ip~ilv~NKiD~~ 139 (665)
T 2dy1_A 84 YGDFVGEIRGALEAADAALVAVSAEAGVQVG-TERAWTVAERL----GLPRMVVVTKLDKG 139 (665)
T ss_dssp SGGGHHHHHHHHHHCSEEEEEEETTTCSCHH-HHHHHHHHHHT----TCCEEEEEECGGGC
T ss_pred ccchHHHHHHHHhhcCcEEEEEcCCcccchh-HHHHHHHHHHc----cCCEEEEecCCchh
Confidence 9999988889999999999999987764433 33444444333 68999999999987
|
| >2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.85 E-value=8.4e-22 Score=146.40 Aligned_cols=160 Identities=16% Similarity=0.229 Sum_probs=80.6
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHhcCCCC-CCC--------CCccceeEEEE--EeCC--EEEEEEecCCc-------h
Q 030429 9 FKQEMELSLIGLQNAGKTSLVNTIATGGYS-EDM--------IPTVGFNMRKV--TKGN--VTIKLWDLGGQ-------R 68 (177)
Q Consensus 9 ~~~~~~i~i~G~~~~GKSsli~~l~~~~~~-~~~--------~~t~~~~~~~~--~~~~--~~~~~~D~~g~-------~ 68 (177)
....++|+++|++|+|||||++++++.... ... .+|.+...... ..++ ..+.+|||||. +
T Consensus 34 ~~~~~~I~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~l~i~DTpG~gd~~~~~e 113 (361)
T 2qag_A 34 KGFEFTLMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRD 113 (361)
T ss_dssp HCCEECEEECCCTTSCHHHHHHHHTTCCC---------------CEEEEEEEEC----CEEEEEEEEC------------
T ss_pred CCCCEEEEEEcCCCCCHHHHHHHHhCCCCCCCCcccCCCcccCCceeEEEEEEEeecCCcccceEEEEeccccccCccHH
Confidence 345689999999999999999998754322 221 13333333322 2233 47999999998 4
Q ss_pred hhHHhHH-------HHhcCC-------------CEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccc
Q 030429 69 RFRTMWE-------RYCRGV-------------SAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSE 128 (177)
Q Consensus 69 ~~~~~~~-------~~~~~~-------------d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~ 128 (177)
.+..... .++..+ |+++++++.+ ..++......+...+. .++|+++|+||+|+..
T Consensus 114 ~~~~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~-~~~l~~~d~~~~~~l~----~~~piIlV~NK~Dl~~ 188 (361)
T 2qag_A 114 CFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPF-GHGLKPLDVAFMKAIH----NKVNIVPVIAKADTLT 188 (361)
T ss_dssp --CCTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSS-SSSCCHHHHHHHHHTC----S-SCEEEEEECCSSSC
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecC-CCCcchhHHHHHHHhc----cCCCEEEEEECCCCCC
Confidence 4444443 333322 3455555532 4455555544433332 4789999999999976
Q ss_pred ccCHHHHHHHhCcccccCCceeEEEeeecCCCChHHHHHHHHHHhhh
Q 030429 129 ALSKQALVDQLGLESITDREVCCYMISCKDSINIDAVIDWLIKHSKT 175 (177)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~ 175 (177)
..+.....+... ......+++++++||+++.+ ++.|..+.+.+.+
T Consensus 189 ~~ev~~~k~~i~-~~~~~~~i~~~~~Sa~~~~~-~e~~~~l~~~i~~ 233 (361)
T 2qag_A 189 LKERERLKKRIL-DEIEEHNIKIYHLPDAESDE-DEDFKEQTRLLKA 233 (361)
T ss_dssp HHHHHHHHHHHH-HHTTCC-CCSCCCC----------CHHHHHHHHH
T ss_pred HHHHHHHHHHHH-HHHHHCCCCEEeCCCcCCCc-chhHHHHHHHHHh
Confidence 543322212221 11222346889999999998 7777777776543
|
| >1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1 | Back alignment and structure |
|---|
Probab=99.84 E-value=1.9e-20 Score=140.83 Aligned_cols=167 Identities=23% Similarity=0.232 Sum_probs=115.0
Q ss_pred eecccccceeEEEEEcCCCCCHHHHHHHHhcCCC--CCCCCCccceeEEEEEeCC-EEEEEEecCCchhh-------HHh
Q 030429 4 HISLFFKQEMELSLIGLQNAGKTSLVNTIATGGY--SEDMIPTVGFNMRKVTKGN-VTIKLWDLGGQRRF-------RTM 73 (177)
Q Consensus 4 ~~~~~~~~~~~i~i~G~~~~GKSsli~~l~~~~~--~~~~~~t~~~~~~~~~~~~-~~~~~~D~~g~~~~-------~~~ 73 (177)
..++..+....|+++|++|||||||++++.+... ......|.......+..++ ..+.+||+||.... ...
T Consensus 149 ~i~lelk~g~~VgLVG~~gAGKSTLL~~Lsg~~~~i~~~~ftTl~p~~G~V~~~~~~~~~l~DtpGli~~a~~~~~L~~~ 228 (416)
T 1udx_A 149 RLRLELMLIADVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSEEERFTLADIPGIIEGASEGKGLGLE 228 (416)
T ss_dssp EEEEEECCSCSEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEEEEECSSSCEEEEEECCCCCCCGGGSCCSCHH
T ss_pred eeeeEEcCCCEEEEECCCCCcHHHHHHHHHcCCccccCcccceecceeeEEEecCcceEEEEeccccccchhhhhhhhHH
Confidence 4556666777899999999999999999986532 1112233444455555554 78999999996321 111
Q ss_pred HHHHhcCCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCC-CCCCcEEEEeeCCCcccccCHHHHHHHhCcccccCCceeEE
Q 030429 74 WERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPS-LSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCY 152 (177)
Q Consensus 74 ~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (177)
....+..++.++.++|++ ..++..+..+..++..... ....|.++|+||+|.......+.+.+.+. ....+++
T Consensus 229 fl~~~era~~lL~vvDls-~~~~~~ls~g~~el~~la~aL~~~P~ILVlNKlDl~~~~~~~~l~~~l~-----~~g~~vi 302 (416)
T 1udx_A 229 FLRHIARTRVLLYVLDAA-DEPLKTLETLRKEVGAYDPALLRRPSLVALNKVDLLEEEAVKALADALA-----REGLAVL 302 (416)
T ss_dssp HHHHHTSSSEEEEEEETT-SCHHHHHHHHHHHHHHHCHHHHHSCEEEEEECCTTSCHHHHHHHHHHHH-----TTTSCEE
T ss_pred HHHHHHHHHhhhEEeCCc-cCCHHHHHHHHHHHHHHhHHhhcCCEEEEEECCChhhHHHHHHHHHHHH-----hcCCeEE
Confidence 123456799999999998 6667777666665544321 12579999999999976522233333322 1234799
Q ss_pred EeeecCCCChHHHHHHHHHHhhhc
Q 030429 153 MISCKDSINIDAVIDWLIKHSKTA 176 (177)
Q Consensus 153 ~~Sa~~~~~i~~l~~~l~~~~~~~ 176 (177)
++||+++.|+++++++|.+.+.+.
T Consensus 303 ~iSA~~g~gi~eL~~~i~~~l~~~ 326 (416)
T 1udx_A 303 PVSALTGAGLPALKEALHALVRST 326 (416)
T ss_dssp ECCTTTCTTHHHHHHHHHHHHHTS
T ss_pred EEECCCccCHHHHHHHHHHHHHhc
Confidence 999999999999999999988754
|
| >2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.83 E-value=1.9e-19 Score=143.50 Aligned_cols=117 Identities=21% Similarity=0.228 Sum_probs=88.3
Q ss_pred cccceeEEEEEcCCCCCHHHHHHHHhc--CCCCC------------------CCCCccceeEEEEEeCCEEEEEEecCCc
Q 030429 8 FFKQEMELSLIGLQNAGKTSLVNTIAT--GGYSE------------------DMIPTVGFNMRKVTKGNVTIKLWDLGGQ 67 (177)
Q Consensus 8 ~~~~~~~i~i~G~~~~GKSsli~~l~~--~~~~~------------------~~~~t~~~~~~~~~~~~~~~~~~D~~g~ 67 (177)
...+..+|+++|.+|+|||||+++|+. +.+.. ....|.......+..++..+++|||||+
T Consensus 6 ~~~~~~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~ 85 (693)
T 2xex_A 6 SLEKTRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAAWEGHRVNIIDTPGH 85 (693)
T ss_dssp CSTTEEEEEEECCGGGTHHHHHHHHHHHHSSCC-------------------------CCSEEEEEETTEEEEEECCCCC
T ss_pred CcccceEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCceecccchhhhhcCceEeeeeEEEEECCeeEEEEECcCC
Confidence 456778999999999999999999984 22110 1223444445556778899999999999
Q ss_pred hhhHHhHHHHhcCCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccc
Q 030429 68 RRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEA 129 (177)
Q Consensus 68 ~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~ 129 (177)
.+|......++..+|++++|+|+++..+......| ..+... +.|+++|+||+|+...
T Consensus 86 ~df~~~~~~~l~~aD~~llVvDa~~g~~~~~~~~~-~~~~~~----~~p~ilviNK~Dl~~~ 142 (693)
T 2xex_A 86 VDFTVEVERSLRVLDGAVTVLDAQSGVEPQTETVW-RQATTY----GVPRIVFVNKMDKLGA 142 (693)
T ss_dssp SSCCHHHHHHHHHCSEEEEEEETTTBSCHHHHHHH-HHHHHT----TCCEEEEEECTTSTTC
T ss_pred cchHHHHHHHHHHCCEEEEEECCCCCCcHHHHHHH-HHHHHc----CCCEEEEEECCCcccc
Confidence 99988888889999999999999987766655443 334333 7899999999999764
|
| >3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=5e-20 Score=131.51 Aligned_cols=118 Identities=18% Similarity=0.110 Sum_probs=81.7
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcCCCC--CC-CCCccceeEEEEEeCCEEEEEEecCCchhhHHhHHHHh--------
Q 030429 10 KQEMELSLIGLQNAGKTSLVNTIATGGYS--ED-MIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTMWERYC-------- 78 (177)
Q Consensus 10 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~--~~-~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~-------- 78 (177)
.+.++|+++|.+|+|||||++++++.... .. ...|.......+..++..+.+|||||+.++......++
T Consensus 34 ~~~~~I~lvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~l~liDTpG~~~~~~~~~~~~~~i~~~l~ 113 (262)
T 3def_A 34 MNSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTMGGFTINIIDTPGLVEAGYVNHQALELIKGFLV 113 (262)
T ss_dssp CCEEEEEEEECTTSSHHHHHHHHHTSCCSCCCSSCC-CCCCEEEEEEETTEEEEEEECCCSEETTEECHHHHHHHHHHTT
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcceeeEEEEEEECCeeEEEEECCCCCCcccchHHHHHHHHHHHh
Confidence 46799999999999999999999977642 22 22344555666778899999999999876643322222
Q ss_pred -cCCCEEEEEEeCCCCCCHHHH-HHHHHHHHcCCCC-CCCcEEEEeeCCCccc
Q 030429 79 -RGVSAILYVVDAADRDSVPIA-RSELHELLMKPSL-SGIPLLVLGNKIDKSE 128 (177)
Q Consensus 79 -~~~d~~i~v~d~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~iiv~nK~D~~~ 128 (177)
..+|++++|++++... +... ..++..+...... ...|+++|+||+|+.+
T Consensus 114 ~~~~~~il~V~~~d~~~-~~~~~~~~~~~l~~~~~~~~~~~~ivv~nK~Dl~~ 165 (262)
T 3def_A 114 NRTIDVLLYVDRLDVYA-VDELDKQVVIAITQTFGKEIWCKTLLVLTHAQFSP 165 (262)
T ss_dssp TCEECEEEEEEESSCSC-CCHHHHHHHHHHHHHHCGGGGGGEEEEEECTTCCC
T ss_pred cCCCCEEEEEEcCCCCC-CCHHHHHHHHHHHHHhchhhhcCEEEEEeCcccCC
Confidence 2689999999987655 4333 3444444332211 1249999999999853
|
| >2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H | Back alignment and structure |
|---|
Probab=99.83 E-value=5.8e-19 Score=140.91 Aligned_cols=116 Identities=17% Similarity=0.103 Sum_probs=85.2
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHhcC--CCCC------------------CCCCccceeEEEEEeCC-------EEEEE
Q 030429 9 FKQEMELSLIGLQNAGKTSLVNTIATG--GYSE------------------DMIPTVGFNMRKVTKGN-------VTIKL 61 (177)
Q Consensus 9 ~~~~~~i~i~G~~~~GKSsli~~l~~~--~~~~------------------~~~~t~~~~~~~~~~~~-------~~~~~ 61 (177)
.++..+|+++|..|+|||||+++|+.. .+.. ....|.......+..++ +.+++
T Consensus 7 ~~~~~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g~v~~g~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~i~l 86 (704)
T 2rdo_7 7 IARYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTAFWSGMAKQYEPHRINI 86 (704)
T ss_pred cccccEEEEECCCCCCHHHHHHHHHHhcCCcccccccCCCceeecChhhHHhcCceeeeceEEEEECCccccCCceeEEE
Confidence 456789999999999999999999742 1111 11123333334455555 89999
Q ss_pred EecCCchhhHHhHHHHhcCCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccc
Q 030429 62 WDLGGQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEA 129 (177)
Q Consensus 62 ~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~ 129 (177)
|||||+.+|...+..++..+|++++|+|+++........ .|..... .++|+++|+||+|+...
T Consensus 87 iDTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~qt~~-~~~~~~~----~~ip~ilviNKiD~~~~ 149 (704)
T 2rdo_7 87 IDTPGHVDFTIEVERSMRVLDGAVMVYCAVGGVQPQSET-VWRQANK----YKVPRIAFVNKMDRMGA 149 (704)
T ss_pred EeCCCccchHHHHHHHHHHCCEEEEEEeCCCCCcHHHHH-HHHHHHH----cCCCEEEEEeCCCcccc
Confidence 999999999988899999999999999998876544433 3333322 36899999999998654
|
| >1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=7.8e-19 Score=125.83 Aligned_cols=119 Identities=14% Similarity=0.055 Sum_probs=80.7
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcCCCC---CCCCCccceeEEEEEeCCEEEEEEecCCchhhHH-------hHHHH--
Q 030429 10 KQEMELSLIGLQNAGKTSLVNTIATGGYS---EDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRT-------MWERY-- 77 (177)
Q Consensus 10 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~---~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~-------~~~~~-- 77 (177)
...++|+++|.+|+|||||+|++++..+. .....+..........++..+.+|||||..++.. .+..+
T Consensus 37 ~~~~~I~vvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~l~iiDTpG~~~~~~~~~~~~~~i~~~~~ 116 (270)
T 1h65_A 37 VNSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRAGFTLNIIDTPGLIEGGYINDMALNIIKSFLL 116 (270)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSSCCCSSCEEEEEEETTEEEEEEECCCSEETTEECHHHHHHHHHHTT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeeEEEEEeeCCeEEEEEECCCCCCCccchHHHHHHHHHHhh
Confidence 35799999999999999999999977642 1222333444555677889999999999765431 22222
Q ss_pred hcCCCEEEEEEeCCCCCCHHHH-HHHHHHHHcCCC-CCCCcEEEEeeCCCcccc
Q 030429 78 CRGVSAILYVVDAADRDSVPIA-RSELHELLMKPS-LSGIPLLVLGNKIDKSEA 129 (177)
Q Consensus 78 ~~~~d~~i~v~d~~~~~~~~~~-~~~~~~~~~~~~-~~~~~~iiv~nK~D~~~~ 129 (177)
...+|++++|+|++... +... ..++..+..... ....|+++|+||+|+.+.
T Consensus 117 ~~~~d~il~v~~~d~~~-~~~~~~~~~~~l~~~~~~~~~~~iivV~nK~Dl~~~ 169 (270)
T 1h65_A 117 DKTIDVLLYVDRLDAYR-VDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSPP 169 (270)
T ss_dssp TCEECEEEEEEESSCCC-CCHHHHHHHHHHHHHHCGGGGGGEEEEEECCSCCCG
T ss_pred cCCCCEEEEEEeCCCCc-CCHHHHHHHHHHHHHhCcccccCEEEEEECcccCCc
Confidence 23689999999986643 4433 344444433211 012699999999998654
|
| >3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=1.2e-18 Score=135.57 Aligned_cols=119 Identities=20% Similarity=0.246 Sum_probs=89.0
Q ss_pred cccccceeEEEEEcCCCCCHHHHHHHHhc-------------CC-----------CCCCCCCccceeEEEEEeCCEEEEE
Q 030429 6 SLFFKQEMELSLIGLQNAGKTSLVNTIAT-------------GG-----------YSEDMIPTVGFNMRKVTKGNVTIKL 61 (177)
Q Consensus 6 ~~~~~~~~~i~i~G~~~~GKSsli~~l~~-------------~~-----------~~~~~~~t~~~~~~~~~~~~~~~~~ 61 (177)
.-+..+.-||+|+|+.++|||||..+++. +. ..+...-|+......+.++++.+++
T Consensus 25 ~~e~~r~RNiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNl 104 (548)
T 3vqt_A 25 EREAARRRTFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQFPYRDRVVNL 104 (548)
T ss_dssp HHHHHTEEEEEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC--------------------CTTTEEEEEETTEEEEE
T ss_pred hhcccccceEEEEeCCCCCHHHHHHHHHHhcCcccccceeecCccccccccCChHHHHHCCCcEeeceEEEEECCEEEEE
Confidence 34456778999999999999999999961 10 1222333555666678889999999
Q ss_pred EecCCchhhHHhHHHHhcCCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccc
Q 030429 62 WDLGGQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEA 129 (177)
Q Consensus 62 ~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~ 129 (177)
+||||+.+|.......++-+|++++|+|+...-.... ...|...... ++|.++++||+|....
T Consensus 105 IDTPGHvDF~~Ev~raL~~~DgAvlVvda~~GV~~qT-~~v~~~a~~~----~lp~i~fINK~Dr~~a 167 (548)
T 3vqt_A 105 LDTPGHQDFSEDTYRVLTAVDSALVVIDAAKGVEAQT-RKLMDVCRMR----ATPVMTFVNKMDREAL 167 (548)
T ss_dssp ECCCCGGGCSHHHHHHHHSCSEEEEEEETTTBSCHHH-HHHHHHHHHT----TCCEEEEEECTTSCCC
T ss_pred EeCCCcHHHHHHHHHHHHhcCceEEEeecCCCccccc-HHHHHHHHHh----CCceEEEEecccchhc
Confidence 9999999999999999999999999999977644433 3334444444 7999999999998653
|
| >2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A | Back alignment and structure |
|---|
Probab=99.81 E-value=1.1e-19 Score=134.81 Aligned_cols=156 Identities=19% Similarity=0.170 Sum_probs=94.7
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCC------Cc----------------------c-----------------
Q 030429 11 QEMELSLIGLQNAGKTSLVNTIATGGYSEDMI------PT----------------------V----------------- 45 (177)
Q Consensus 11 ~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~------~t----------------------~----------------- 45 (177)
...+|+++|.+|||||||+|+|++..+.+... ++ .
T Consensus 30 ~~~~I~vvG~~~~GKSSLln~L~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~tt~~~v~~~i~~~~~~i~ 109 (353)
T 2x2e_A 30 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNATTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVT 109 (353)
T ss_dssp CCCEEEEECBTTSSHHHHHHTTTTSCCSCCCSSSCCCSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHhCCCcCCCCCCcccccceEEEEEcCCccceeeeecCCcccCCHHHHHHHHHHHHHHhc
Confidence 35799999999999999999999876532111 11 0
Q ss_pred ----ce----eEEEEE-eCCEEEEEEecCCch-------------hhHHhHHHHhcCCC-EEEEEEeCCCCCCHHHHHHH
Q 030429 46 ----GF----NMRKVT-KGNVTIKLWDLGGQR-------------RFRTMWERYCRGVS-AILYVVDAADRDSVPIARSE 102 (177)
Q Consensus 46 ----~~----~~~~~~-~~~~~~~~~D~~g~~-------------~~~~~~~~~~~~~d-~~i~v~d~~~~~~~~~~~~~ 102 (177)
++ ....+. .+...+.+|||||.. .+......++..++ ++++|+|++....-.....+
T Consensus 110 g~~~gi~~~~~~~~i~~~~~~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiL~v~~a~~~~~~~~~~~i 189 (353)
T 2x2e_A 110 GTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKV 189 (353)
T ss_dssp TTTTCCCCCCEEEEEEETTCCSEEEEECCCBCSSCCTTCCTTHHHHHHHHHHHHHTSTTEEEEEEEETTSCGGGCHHHHH
T ss_pred ccCCCcccCceEEEEecCCCCCcEEEECCCCCCCccCCCchhHHHHHHHHHHHHHcCCCeEEEEEecCCCccchhHHHHH
Confidence 00 001111 124679999999953 34556666776555 55556676543221222223
Q ss_pred HHHHHcCCCCCCCcEEEEeeCCCcccccC-HHHHHHHhCcccccCCceeEEEeeecCCCChHHHHHHHHH
Q 030429 103 LHELLMKPSLSGIPLLVLGNKIDKSEALS-KQALVDQLGLESITDREVCCYMISCKDSINIDAVIDWLIK 171 (177)
Q Consensus 103 ~~~~~~~~~~~~~~~iiv~nK~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~ 171 (177)
+..+ .. .+.|+++|+||+|+.+... ..+..+. ..........+++++||+++.|++++++.+.+
T Consensus 190 ~~~~-~~---~~~~~i~V~NK~Dl~~~~~~~~~~~~~-~~~~l~~~~~~v~~~SA~~~~~i~~l~~~l~~ 254 (353)
T 2x2e_A 190 AKEV-DP---QGQRTIGVITKLDLMDEGTDARDVLEN-KLLPLRRGYIGVVNRSQKDIDGKKDITAALAA 254 (353)
T ss_dssp HHHH-CT---TCTTEEEEEECGGGSCTTCCCHHHHTT-CSSCCTTCEEECCCCCHHHHHTTCCHHHHHHH
T ss_pred HHHh-Cc---CCCceEEEeccccccCcchhHHHHHhC-CcccccCCceEEEeCCcccccccccHHHHHHH
Confidence 3332 22 4689999999999976433 2222221 11111122356889999999999999999876
|
| >3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=1.3e-19 Score=134.81 Aligned_cols=151 Identities=19% Similarity=0.199 Sum_probs=95.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccc----------------------------------------------
Q 030429 13 MELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVG---------------------------------------------- 46 (177)
Q Consensus 13 ~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~---------------------------------------------- 46 (177)
.+|+++|++|||||||++++++..+.+....+..
T Consensus 35 p~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~ 114 (360)
T 3t34_A 35 PAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLQKIDDGTREYAEFLHLPRKKFTDFAAVRKEIQDETDRE 114 (360)
T ss_dssp CEEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCCCSCEEEEEEECSSCSCCEEEETTSTTCCBSCHHHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCcHHHHHHHHhCCCcCCCCCCcccCcceEEEEecCCCcccceeeeecCCCcccCCHHHHHHHHHHHHHHh
Confidence 3999999999999999999998665222111000
Q ss_pred -----------eeEEEEEeCCEEEEEEecCCchhh-------------HHhHHHHhcCCCEEEEEEeCCCCCCHH-HHHH
Q 030429 47 -----------FNMRKVTKGNVTIKLWDLGGQRRF-------------RTMWERYCRGVSAILYVVDAADRDSVP-IARS 101 (177)
Q Consensus 47 -----------~~~~~~~~~~~~~~~~D~~g~~~~-------------~~~~~~~~~~~d~~i~v~d~~~~~~~~-~~~~ 101 (177)
............+.+|||||..++ ......++..+|++++|+|.++.+... ....
T Consensus 115 ~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~~~~~~ 194 (360)
T 3t34_A 115 TGRSKAISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQDLATSDAIK 194 (360)
T ss_dssp SCTTCCCCCSCEEEEEEETTSCSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGGCHHHH
T ss_pred cCCCCCcccceEEEEEeCCCCCCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCCHHHHH
Confidence 001111123457899999997765 666778899999999999876654332 2122
Q ss_pred HHHHHHcCCCCCCCcEEEEeeCCCcccccCHHHHHHHhCcccccCCceeEEEeeecCCCChHHHHHHHH
Q 030429 102 ELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCKDSINIDAVIDWLI 170 (177)
Q Consensus 102 ~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~ 170 (177)
.... ....+.|+++|+||+|+.+.... ..+.+... ......+|+++|++++.++++.+..+.
T Consensus 195 l~~~----~~~~~~~~i~V~nK~Dl~~~~~~--~~~~~~~~-~~~~~~~~~~v~~~s~~~i~~~~~~~~ 256 (360)
T 3t34_A 195 ISRE----VDPSGDRTFGVLTKIDLMDKGTD--AVEILEGR-SFKLKYPWVGVVNRSQADINKNVDMIA 256 (360)
T ss_dssp HHHH----SCTTCTTEEEEEECGGGCCTTCC--SHHHHTTS-SSCCSSCCEEECCCCHHHHHTTCCHHH
T ss_pred HHHH----hcccCCCEEEEEeCCccCCCccc--HHHHHcCc-cccccCCeEEEEECChHHhccCCCHHH
Confidence 2222 22246799999999999764321 11112111 122335788999998888877655443
|
| >3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A* | Back alignment and structure |
|---|
Probab=99.79 E-value=3.3e-19 Score=132.37 Aligned_cols=109 Identities=12% Similarity=0.069 Sum_probs=72.2
Q ss_pred CCEEEEEEecCCchhhHHhHHHHhcCCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccCHHH
Q 030429 55 GNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQA 134 (177)
Q Consensus 55 ~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~ 134 (177)
.++.+.+|||||..... ...+..+|++++|+|.+..+....+. ......|+++|+||+|+.+......
T Consensus 170 ~~~~~iiiDTpGi~~~~---~~~~~~aD~vl~V~d~~~~~~~~~l~---------~~~~~~p~ivVlNK~Dl~~~~~~~~ 237 (355)
T 3p32_A 170 AGFDVILIETVGVGQSE---VAVANMVDTFVLLTLARTGDQLQGIK---------KGVLELADIVVVNKADGEHHKEARL 237 (355)
T ss_dssp TTCCEEEEEECSCSSHH---HHHHTTCSEEEEEEESSTTCTTTTCC---------TTSGGGCSEEEEECCCGGGHHHHHH
T ss_pred CCCCEEEEeCCCCCcHH---HHHHHhCCEEEEEECCCCCccHHHHH---------HhHhhcCCEEEEECCCCcChhHHHH
Confidence 56889999999954432 23457899999999987654432211 1112468999999999976433322
Q ss_pred HHHHhCc----cccc--CCceeEEEeeecCCCChHHHHHHHHHHhhh
Q 030429 135 LVDQLGL----ESIT--DREVCCYMISCKDSINIDAVIDWLIKHSKT 175 (177)
Q Consensus 135 ~~~~~~~----~~~~--~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~ 175 (177)
..+.+.. .... ....+++++||++|.|+++++++|.+.+..
T Consensus 238 ~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~Gi~~L~~~i~~~~~~ 284 (355)
T 3p32_A 238 AARELSAAIRLIYPREALWRPPVLTMSAVEGRGLAELWDTVERHRQV 284 (355)
T ss_dssp HHHHHHHHHHHHSTTCCSCCCCEEEEBGGGTBSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhccccccCCCCceEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 2222211 1100 113479999999999999999999987653
|
| >1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2 | Back alignment and structure |
|---|
Probab=99.77 E-value=2.3e-19 Score=134.62 Aligned_cols=81 Identities=23% Similarity=0.302 Sum_probs=46.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCC--CCCccceeEEEEE---------------------eC---CEEEEEEecCC
Q 030429 13 MELSLIGLQNAGKTSLVNTIATGGYSED--MIPTVGFNMRKVT---------------------KG---NVTIKLWDLGG 66 (177)
Q Consensus 13 ~~i~i~G~~~~GKSsli~~l~~~~~~~~--~~~t~~~~~~~~~---------------------~~---~~~~~~~D~~g 66 (177)
++|+++|.||||||||+|++++...... ...|......... .+ ...+.+|||||
T Consensus 1 ~kI~ivG~pnvGKSTL~n~L~~~~~~~~~~p~tT~~~~~g~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~i~lvDtpG 80 (397)
T 1wxq_A 1 MEIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVAG 80 (397)
T ss_dssp CEEEEEECTTSSHHHHHHHHHC--------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC-
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCcccCCCCcccCCceEEEeeccCCchHHhhhhcccccccccCCcceEEEEEEECCC
Confidence 5899999999999999999997653211 1123222222111 11 36899999999
Q ss_pred chhh----HHhHH---HHhcCCCEEEEEEeCCCC
Q 030429 67 QRRF----RTMWE---RYCRGVSAILYVVDAADR 93 (177)
Q Consensus 67 ~~~~----~~~~~---~~~~~~d~~i~v~d~~~~ 93 (177)
.... ..+.. .+++.+|++++|+|+++.
T Consensus 81 ~~~~a~~~~~l~~~~l~~i~~aD~il~VvD~~~~ 114 (397)
T 1wxq_A 81 LVPGAHEGRGLGNKFLDDLRMASALIHVVDATGK 114 (397)
T ss_dssp --------------CCCSSTTCSEEEEEEETTCC
T ss_pred cccchhhhhhHHHHHHHHHhcCCEEEEEEecccc
Confidence 7542 22222 246789999999999875
|
| >2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.76 E-value=3.8e-18 Score=132.85 Aligned_cols=125 Identities=18% Similarity=0.138 Sum_probs=85.6
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcCCCC---CCCCC-ccceeEEEE-----------------------E---------
Q 030429 10 KQEMELSLIGLQNAGKTSLVNTIATGGYS---EDMIP-TVGFNMRKV-----------------------T--------- 53 (177)
Q Consensus 10 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~---~~~~~-t~~~~~~~~-----------------------~--------- 53 (177)
....+|+++|.+|+|||||+|+|++..+. ....+ |........ .
T Consensus 63 ~~~~~V~vvG~~n~GKSTLIN~Llg~~~~~~~vs~~p~T~~~~~i~~~~~~~i~~g~~l~~~~~~~~~~L~~~g~~~~~~ 142 (550)
T 2qpt_A 63 DGKPMVLVAGQYSTGKTSFIQYLLEQEVPGSRVGPEPTTDCFVAVMHGETEGTVPGNALVVDPEKPFRKLNPFGNTFLNR 142 (550)
T ss_dssp SSCCEEEEEEBTTSCHHHHHHHHHTSCCSSCCCCSSCCCCSEEEEECCSSSEEECCC------------------CCCTT
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCccccCccCCCCccceEEEEEECCcccccCCceeeecCcccHHHHhhhccccccc
Confidence 45689999999999999999999987753 12222 211111000 0
Q ss_pred -----eCC---EEEEEEecCCchh-----------hHHhHHHHhcCCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCC
Q 030429 54 -----KGN---VTIKLWDLGGQRR-----------FRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSG 114 (177)
Q Consensus 54 -----~~~---~~~~~~D~~g~~~-----------~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (177)
..+ ..+.+|||||... +......++..+|++++|+|+++.........++..+.. ..
T Consensus 143 ~~~~~~~~~ll~~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~~~~~~~~~l~~l~~----~~ 218 (550)
T 2qpt_A 143 FMCAQLPNQVLESISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHKLEISDEFSEAIGALRG----HE 218 (550)
T ss_dssp EEEEECCCHHHHHCEEEECCCBCC-------CCSCHHHHHHHHHHHCSEEEEEEETTSCCCCHHHHHHHHHTTT----CG
T ss_pred ceEEeccccccCCEEEEECcCCCCcchhHHHHHhhHHHHHHHHHHhCCEEEEEEeCCcCCCCHHHHHHHHHHHh----cC
Confidence 000 3588999999764 556666778899999999999886666666666655432 35
Q ss_pred CcEEEEeeCCCcccccCHHHHHHH
Q 030429 115 IPLLVLGNKIDKSEALSKQALVDQ 138 (177)
Q Consensus 115 ~~~iiv~nK~D~~~~~~~~~~~~~ 138 (177)
.|+++|+||+|+.+..+..+....
T Consensus 219 ~pvilVlNK~Dl~~~~el~~~~~~ 242 (550)
T 2qpt_A 219 DKIRVVLNKADMVETQQLMRVYGA 242 (550)
T ss_dssp GGEEEEEECGGGSCHHHHHHHHHH
T ss_pred CCEEEEEECCCccCHHHHHHHHHH
Confidence 799999999999876544444443
|
| >2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A* | Back alignment and structure |
|---|
Probab=99.76 E-value=1e-18 Score=126.89 Aligned_cols=160 Identities=18% Similarity=0.248 Sum_probs=75.8
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHhcC-CCCCCC--------CCccceeEEEE--E--eCCEEEEEEecCCc-------h
Q 030429 9 FKQEMELSLIGLQNAGKTSLVNTIATG-GYSEDM--------IPTVGFNMRKV--T--KGNVTIKLWDLGGQ-------R 68 (177)
Q Consensus 9 ~~~~~~i~i~G~~~~GKSsli~~l~~~-~~~~~~--------~~t~~~~~~~~--~--~~~~~~~~~D~~g~-------~ 68 (177)
..-.++|+++|++|+|||||++++.+. .+.... .++.......+ . .....+++||++|. +
T Consensus 15 ~~~~~~I~lvG~nG~GKSTLl~~L~g~~~~~~~gi~~~g~~~~~t~~~~~~~~~~q~~~~~~~ltv~Dt~g~~~~~~~~e 94 (301)
T 2qnr_A 15 KGFEFTLMVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRD 94 (301)
T ss_dssp ---CEEEEEEEETTSSHHHHHHHHHC------------------------CEEEEC---CCEEEEEEEEC----------
T ss_pred cCCCEEEEEECCCCCCHHHHHHHHhCCCccCCCCcccCCcccCCcceEeeEEEEecCCCcccCcchhhhhhhhhhcCcHH
Confidence 345689999999999999999998764 332221 11222111111 1 22468999999997 4
Q ss_pred hhHHhHH-------HHhc-------------CCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccc
Q 030429 69 RFRTMWE-------RYCR-------------GVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSE 128 (177)
Q Consensus 69 ~~~~~~~-------~~~~-------------~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~ 128 (177)
.+..... .++. .+++++++.+.+. .+++.....+...+. ...|+++|+||+|+..
T Consensus 95 ~~~~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~-~~Ld~~~~~~l~~l~----~~~~iilV~~K~Dl~~ 169 (301)
T 2qnr_A 95 CFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFG-HGLKPLDVAFMKAIH----NKVNIVPVIAKADTLT 169 (301)
T ss_dssp -CTTHHHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSSS-SSCCHHHHHHHHHHT----TTSCEEEEECCGGGSC
T ss_pred HHHHHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCcc-cCCCHHHHHHHHHHH----hcCCEEEEEEeCCCCC
Confidence 4443332 2222 1234555555322 234443322222211 3579999999999976
Q ss_pred ccCHHHHHHHhCcccccCCceeEEEeeecCCCChHHHHHHHHHHhhh
Q 030429 129 ALSKQALVDQLGLESITDREVCCYMISCKDSINIDAVIDWLIKHSKT 175 (177)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~ 175 (177)
..+.....+... ......+++++++||+++ |++++|+.+.+.+.+
T Consensus 170 ~~e~~~~~~~~~-~~~~~~~~~~~e~Sa~~~-~v~e~f~~l~~~i~~ 214 (301)
T 2qnr_A 170 LKERERLKKRIL-DEIEEHNIKIYHLPDAES-DEDEDFKEQTRLLKA 214 (301)
T ss_dssp HHHHHHHHHHHH-HHHHHTTCCCCCCC----------CHHHHHHHHT
T ss_pred HHHHHHHHHHHH-HHHHHcCCeEEecCCccc-cccHHHHHHHHHhhc
Confidence 432211111111 111112357899999999 999999999887753
|
| >1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=3.2e-18 Score=139.01 Aligned_cols=115 Identities=20% Similarity=0.220 Sum_probs=85.5
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHhcCC------------CC------CCCCCccceeEEEEEe----------------
Q 030429 9 FKQEMELSLIGLQNAGKTSLVNTIATGG------------YS------EDMIPTVGFNMRKVTK---------------- 54 (177)
Q Consensus 9 ~~~~~~i~i~G~~~~GKSsli~~l~~~~------------~~------~~~~~t~~~~~~~~~~---------------- 54 (177)
..+..||+++|++++|||||+++|+... +. .....|+......+..
T Consensus 16 ~~~~rnI~IiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~D~~~~E~~rgiTI~~~~~~~~~~~~~~~~~~i~~~~~~ 95 (842)
T 1n0u_A 16 VTNVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDG 95 (842)
T ss_dssp GGGEEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCS
T ss_pred cccccEEEEECCCCCCHHHHHHHHHHhcCCcccccCCCceeecCchhhhhcceeEeeceeEEEecccccccccccccccC
Confidence 4566899999999999999999998531 10 0112233333333333
Q ss_pred CCEEEEEEecCCchhhHHhHHHHhcCCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccc
Q 030429 55 GNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSE 128 (177)
Q Consensus 55 ~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~ 128 (177)
.++.+++|||||+.+|...+..+++.+|++++|+|+++..++.....|. .... .++|+++|+||+|+..
T Consensus 96 ~~~~i~liDTPG~~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~-~~~~----~~~p~ilviNK~D~~~ 164 (842)
T 1n0u_A 96 NSFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTETVLR-QALG----ERIKPVVVINKVDRAL 164 (842)
T ss_dssp SEEEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHHHHHH-HHHH----TTCEEEEEEECHHHHH
T ss_pred CCceEEEEECcCchhhHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHH-HHHH----cCCCeEEEEECCCcch
Confidence 2689999999999999999999999999999999999988777755443 3333 3689999999999863
|
| >3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A | Back alignment and structure |
|---|
Probab=99.74 E-value=4.5e-17 Score=129.84 Aligned_cols=156 Identities=18% Similarity=0.169 Sum_probs=99.1
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCCccc-------------------------------------------
Q 030429 11 QEMELSLIGLQNAGKTSLVNTIATGGY-SEDMIPTVG------------------------------------------- 46 (177)
Q Consensus 11 ~~~~i~i~G~~~~GKSsli~~l~~~~~-~~~~~~t~~------------------------------------------- 46 (177)
...+|+++|.+++|||||+|++++..+ +.....++.
T Consensus 50 ~lp~I~vvG~~saGKSSllnaL~g~~~LP~g~g~~Tr~Pl~l~l~~~~~~~~~~l~~~~~~~~~~~~v~~~I~~~~~~~~ 129 (772)
T 3zvr_A 50 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVT 129 (772)
T ss_dssp CCSEEEEEECTTTCHHHHHHHHHSSCCSCCSSSCSCSSCEEEEEEECSSCEEECSTTTTCCBCCHHHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCccCcCCccccccceEEEeecCCcchhheeccCCcccCCHHHHHHHHHHHHhhhc
Confidence 446999999999999999999998765 222111110
Q ss_pred ----------eeEEEEEeCCEEEEEEecCCchh-------------hHHhHHHHh-cCCCEEEEEEeCCCCCCHHHHHHH
Q 030429 47 ----------FNMRKVTKGNVTIKLWDLGGQRR-------------FRTMWERYC-RGVSAILYVVDAADRDSVPIARSE 102 (177)
Q Consensus 47 ----------~~~~~~~~~~~~~~~~D~~g~~~-------------~~~~~~~~~-~~~d~~i~v~d~~~~~~~~~~~~~ 102 (177)
+..........++.++||||... .......++ ..+|++++|+|++....-......
T Consensus 130 g~~~~is~~~i~l~I~~P~~~qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~~~aDlIL~VVDAs~~~~~~d~l~l 209 (772)
T 3zvr_A 130 GTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKI 209 (772)
T ss_dssp CSTTCCCSCCEEEEEEETTCCSEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHTSTTEEEEEEEETTSCSSSCHHHHH
T ss_pred CCCCcccccceEEEEecCCCCceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHhcCCcEEEEEEcCCCCcchhHHHHH
Confidence 00111112234688999999433 223344444 578999999999875444333233
Q ss_pred HHHHHcCCCCCCCcEEEEeeCCCcccccCH-HHHHHHhCcccccCCceeEEEeeecCCCChHHHHHHHHH
Q 030429 103 LHELLMKPSLSGIPLLVLGNKIDKSEALSK-QALVDQLGLESITDREVCCYMISCKDSINIDAVIDWLIK 171 (177)
Q Consensus 103 ~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~ 171 (177)
+..+ .. .+.|+++|+||+|+.+.... ..+.+ -..........+++++||++|.|+++|++.+.+
T Consensus 210 l~~L-~~---~g~pvIlVlNKiDlv~~~~~~~~il~-~~~~~l~lg~~~VV~iSA~~G~GvdeL~eaI~~ 274 (772)
T 3zvr_A 210 AKEV-DP---QGQRTIGVITKLDLMDEGTDARDVLE-NKLLPLRRGYIGVVNRSQKDIDGKKDITAALAA 274 (772)
T ss_dssp HHHH-CT---TCSSEEEEEECTTSSCTTCCSHHHHT-TCSSCCSSCEEECCCCCCEESSSSEEHHHHHHH
T ss_pred HHHH-Hh---cCCCEEEEEeCcccCCcchhhHHHHH-HHhhhhhccCCceEEecccccccchhHHHHHHH
Confidence 3333 22 36899999999999865332 22221 111111123457889999999999999999886
|
| >1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=8.7e-18 Score=119.72 Aligned_cols=170 Identities=14% Similarity=0.033 Sum_probs=100.0
Q ss_pred ecccccceeEEEEEcCCCCCHHHHHHHHh-----cCCC-----CCCCCCc---cc------eeEEEE-------------
Q 030429 5 ISLFFKQEMELSLIGLQNAGKTSLVNTIA-----TGGY-----SEDMIPT---VG------FNMRKV------------- 52 (177)
Q Consensus 5 ~~~~~~~~~~i~i~G~~~~GKSsli~~l~-----~~~~-----~~~~~~t---~~------~~~~~~------------- 52 (177)
-...+.+...+++.|.+||||||+++.+. +... ......+ .+ ......
T Consensus 7 ~~~~~~~~~i~~~~GkgGvGKTTl~~~La~~l~~g~~v~vvd~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (262)
T 1yrb_A 7 HHHHGMASMIVVFVGTAGSGKTTLTGEFGRYLEDNYKVAYVNLDTGVKELPYEPSIDVREFVTVEEIMREGYGPNGAIVE 86 (262)
T ss_dssp CCCTTCCCEEEEEECSTTSSHHHHHHHHHHHHTTTSCEEEEECCSSCSCCSSCCSEEGGGTCCHHHHHTTTCCHHHHHHH
T ss_pred cccCCcceEEEEEeCCCCCCHHHHHHHHHHHHHCCCeEEEEeCCCCccccCCCCCCChhhcccHHHHhhccCCCCCcEEe
Confidence 34567778899999999999999999997 3221 1100000 00 000000
Q ss_pred -----------------E-eCCEEEEEEecCCchhhHHhHH------HHhcCCCEEEEEEeCCCCCCHHHHHHHHHHHHc
Q 030429 53 -----------------T-KGNVTIKLWDLGGQRRFRTMWE------RYCRGVSAILYVVDAADRDSVPIARSELHELLM 108 (177)
Q Consensus 53 -----------------~-~~~~~~~~~D~~g~~~~~~~~~------~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~ 108 (177)
. ..++++.+|||||......... ..+.+ +++++++|++.................
T Consensus 87 ~~~~~~~~~~~l~~~l~~~~~~~d~iiiDtpG~~~~~~~~~l~~~~~~~~~~-~~iv~vvD~~~~~~~~~~~~~~~~~~~ 165 (262)
T 1yrb_A 87 SYDRLMEKFNEYLNKILRLEKENDYVLIDTPGQMETFLFHEFGVRLMENLPY-PLVVYISDPEILKKPNDYCFVRFFALL 165 (262)
T ss_dssp HHHHHHTTHHHHHHHHHHHHHHCSEEEEECCSSHHHHHHSHHHHHHHHTSSS-CEEEEEECGGGCCSHHHHHHHHHHHHH
T ss_pred cHHHHhhhHHHHHHHHHHHhhcCCEEEEeCCCccchhhhhhhHHHHHHHHhh-ceEEeccchhhhcCHHHHHHHHHHHHH
Confidence 0 1235899999999876543211 24566 899999998655444333222111111
Q ss_pred CCCCCCCcEEEEeeCCCcccccCHHHHHHHhCc-------------------------ccccCCceeEEEeeecCCCChH
Q 030429 109 KPSLSGIPLLVLGNKIDKSEALSKQALVDQLGL-------------------------ESITDREVCCYMISCKDSINID 163 (177)
Q Consensus 109 ~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~-------------------------~~~~~~~~~~~~~Sa~~~~~i~ 163 (177)
.....+.|+++|+||+|+.+....++..+.+.. ........+++++||+++.|++
T Consensus 166 ~~~~~~~p~~iv~NK~D~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SA~~~~gi~ 245 (262)
T 1yrb_A 166 IDLRLGATTIPALNKVDLLSEEEKERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREGFE 245 (262)
T ss_dssp HHHHHTSCEEEEECCGGGCCHHHHHHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSCCCCCEECCTTTCTTHH
T ss_pred HhcccCCCeEEEEecccccccccHHHHHHHHhChHHHHHHHhccccccchhHhHHHHHHHHhcCcccceEEEecCcccHH
Confidence 001125799999999998764322222221100 0001123468999999999999
Q ss_pred HHHHHHHHHhhh
Q 030429 164 AVIDWLIKHSKT 175 (177)
Q Consensus 164 ~l~~~l~~~~~~ 175 (177)
+++++|.+.+..
T Consensus 246 ~l~~~i~~~~~~ 257 (262)
T 1yrb_A 246 DLETLAYEHYCT 257 (262)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHhcc
Confidence 999999987754
|
| >2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.73 E-value=2.7e-17 Score=121.65 Aligned_cols=108 Identities=16% Similarity=0.083 Sum_probs=65.0
Q ss_pred CCEEEEEEecCCchhhHHhHHHHhcCCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccCH--
Q 030429 55 GNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSK-- 132 (177)
Q Consensus 55 ~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~-- 132 (177)
.+..+.++||+|..... ......+|++++|+|++++........ .+ ...|.++|+||+|+.+....
T Consensus 165 ~~~~~iliDT~Gi~~~~---~~l~~~~d~vl~V~d~~~~~~~~~i~~---~i------l~~~~ivVlNK~Dl~~~~~~~~ 232 (349)
T 2www_A 165 AGYDIILIETVGVGQSE---FAVADMVDMFVLLLPPAGGDELQGIKR---GI------IEMADLVAVTKSDGDLIVPARR 232 (349)
T ss_dssp TTCSEEEEECCCC--CH---HHHHTTCSEEEEEECCC---------------------CCSCSEEEECCCSGGGHHHHHH
T ss_pred CCCCEEEEECCCcchhh---hhHHhhCCEEEEEEcCCcchhHHHhHH---HH------HhcCCEEEEeeecCCCchhHHH
Confidence 56788999999954222 334678999999999976532221111 11 13588999999999753221
Q ss_pred --HHHHHHhCccccc--CCceeEEEeeecCCCChHHHHHHHHHHhh
Q 030429 133 --QALVDQLGLESIT--DREVCCYMISCKDSINIDAVIDWLIKHSK 174 (177)
Q Consensus 133 --~~~~~~~~~~~~~--~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~ 174 (177)
.++...+...... ....+++++||++|.|+++++++|.+.+.
T Consensus 233 ~~~~l~~~l~~~~~~a~~~~~~vi~iSA~~g~Gi~~L~~~I~~~~~ 278 (349)
T 2www_A 233 IQAEYVSALKLLRKRSQVWKPKVIRISARSGEGISEMWDKMKDFQD 278 (349)
T ss_dssp HHHHHHHHHTTCC-----CCCEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCccccCCCceEEEEecCCCCCHHHHHHHHHHHHH
Confidence 1222222221110 11246889999999999999999988653
|
| >1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8 | Back alignment and structure |
|---|
Probab=99.73 E-value=8.1e-19 Score=127.51 Aligned_cols=132 Identities=14% Similarity=0.086 Sum_probs=101.7
Q ss_pred HHHHHHhcCCCC-CCCCCccceeEEEEEe-CCEEEEEEecCCchhhHHhHHHHhcCCCEEEEEEeCCCCC-CHHHHHHHH
Q 030429 27 SLVNTIATGGYS-EDMIPTVGFNMRKVTK-GNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAADRD-SVPIARSEL 103 (177)
Q Consensus 27 sli~~l~~~~~~-~~~~~t~~~~~~~~~~-~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~-~~~~~~~~~ 103 (177)
+|+.+++.+.|. ..+.+|.+..+. ... .+..+.+||+ ++++..+++.+++++|++++|+|++++. ++..+..|+
T Consensus 32 sl~~~~~~~~f~~~~~~pTiGd~~~-~~~~~~~~~~iwD~--qer~~~l~~~~~~~ad~vilV~D~~~~~~s~~~l~~~l 108 (301)
T 1u0l_A 32 ERILCKLRGKFRLQNLKIYVGDRVE-YTPDETGSGVIENV--LHRKNLLTKPHVANVDQVILVVTVKMPETSTYIIDKFL 108 (301)
T ss_dssp CEEEEEECGGGTTTTCCCCTTCEEE-EECCCSSSEEEEEE--CCCSCEETTTTEESCCEEEEEECSSTTCCCHHHHHHHH
T ss_pred cEEEEEEcccccccCCCCCCccEEE-EEEcCCCeEEEEEE--ccccceeeccccccCCEEEEEEeCCCCCCCHHHHHHHH
Confidence 688888888887 778888884443 322 2237899999 8899999999999999999999999987 688888888
Q ss_pred HHHHcCCCCCCCcEEEEeeCCCcccccCH---HHHHHHhCcccccCCceeEEEeeecCCCChHHHHHHHHH
Q 030429 104 HELLMKPSLSGIPLLVLGNKIDKSEALSK---QALVDQLGLESITDREVCCYMISCKDSINIDAVIDWLIK 171 (177)
Q Consensus 104 ~~~~~~~~~~~~~~iiv~nK~D~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~ 171 (177)
..+.. .++|+++|+||+|+.+.... +++.+.+.. . .++++|||++|.|++++|+.+..
T Consensus 109 ~~~~~----~~~piilv~NK~DL~~~~~v~~~~~~~~~~~~-----~-~~~~~~SAktg~gv~~lf~~l~g 169 (301)
T 1u0l_A 109 VLAEK----NELETVMVINKMDLYDEDDLRKVRELEEIYSG-----L-YPIVKTSAKTGMGIEELKEYLKG 169 (301)
T ss_dssp HHHHH----TTCEEEEEECCGGGCCHHHHHHHHHHHHHHTT-----T-SCEEECCTTTCTTHHHHHHHHSS
T ss_pred HHHHH----CCCCEEEEEeHHHcCCchhHHHHHHHHHHHhh-----h-CcEEEEECCCCcCHHHHHHHhcC
Confidence 76644 37899999999999764332 233333321 1 47999999999999999988753
|
| >2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=99.73 E-value=6e-18 Score=117.65 Aligned_cols=151 Identities=16% Similarity=0.185 Sum_probs=93.9
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcCCCCCC--------CCCc--------cceeEEEE------------------EeC
Q 030429 10 KQEMELSLIGLQNAGKTSLVNTIATGGYSED--------MIPT--------VGFNMRKV------------------TKG 55 (177)
Q Consensus 10 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~--------~~~t--------~~~~~~~~------------------~~~ 55 (177)
.+..+|+++|.+|||||||+++++....... ...+ .+.....+ ...
T Consensus 28 ~~~~~i~i~G~~g~GKTTl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (221)
T 2wsm_A 28 SGTVAVNIMGAIGSGKTLLIERTIERIGNEVKIGAMLGDVVSKADYERVRRFGIKAEAISTGKECHLDAHMIYHRLKKFS 107 (221)
T ss_dssp HTCEEEEEEECTTSCHHHHHHHHHHHHTTTSCEEEEECSCCCHHHHHHHHTTTCEEEECCCTTCSSCCHHHHHTTGGGGT
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEecCCCCchhHHHHHhCCCcEEEecCCceeecccHHHHHHHHhcC
Confidence 4567999999999999999999985421110 0000 01111111 123
Q ss_pred CEEEEEEecCCchhhHHhHHHHhcCCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccc--cCHH
Q 030429 56 NVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEA--LSKQ 133 (177)
Q Consensus 56 ~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~--~~~~ 133 (177)
+..+.+|||+|+..... .+-...+.+++|+|+++.... ... +... ...|.++|+||+|+.+. ...+
T Consensus 108 ~~d~iiidt~G~~~~~~---~~~~~~~~~i~vvd~~~~~~~--~~~-~~~~------~~~~~iiv~NK~Dl~~~~~~~~~ 175 (221)
T 2wsm_A 108 DCDLLLIENVGNLICPV---DFDLGENYRVVMVSVTEGDDV--VEK-HPEI------FRVADLIVINKVALAEAVGADVE 175 (221)
T ss_dssp TCSEEEEEEEEBSSGGG---GCCCSCSEEEEEEEGGGCTTH--HHH-CHHH------HHTCSEEEEECGGGHHHHTCCHH
T ss_pred CCCEEEEeCCCCCCCCc---hhccccCcEEEEEeCCCcchh--hhh-hhhh------hhcCCEEEEecccCCcchhhHHH
Confidence 46788999999511111 111246889999999775421 111 1111 14788999999998653 2444
Q ss_pred HHHHHhCcccccCCceeEEEeeecCCCChHHHHHHHHHHhhh
Q 030429 134 ALVDQLGLESITDREVCCYMISCKDSINIDAVIDWLIKHSKT 175 (177)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~ 175 (177)
+..+.+... ....+++++||++|.|+++++++|.+.+..
T Consensus 176 ~~~~~~~~~---~~~~~i~~~Sa~~g~gi~~l~~~l~~~~~~ 214 (221)
T 2wsm_A 176 KMKADAKLI---NPRAKIIEMDLKTGKGFEEWIDFLRGILNV 214 (221)
T ss_dssp HHHHHHHHH---CTTSEEEECBTTTTBTHHHHHHHHHHHHC-
T ss_pred HHHHHHHHh---CCCCeEEEeecCCCCCHHHHHHHHHHHHHH
Confidence 444443221 234579999999999999999999987754
|
| >2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10 | Back alignment and structure |
|---|
Probab=99.73 E-value=1.9e-17 Score=122.19 Aligned_cols=157 Identities=15% Similarity=0.125 Sum_probs=93.7
Q ss_pred cccccceeEEEEEcCCCCCHHHHHHHHhcC------CC---CCCCCCc-------------------cceeEEE------
Q 030429 6 SLFFKQEMELSLIGLQNAGKTSLVNTIATG------GY---SEDMIPT-------------------VGFNMRK------ 51 (177)
Q Consensus 6 ~~~~~~~~~i~i~G~~~~GKSsli~~l~~~------~~---~~~~~~t-------------------~~~~~~~------ 51 (177)
++...+...|+++|++|+|||||++.+.+. .. ..+...+ .......
T Consensus 50 ~~~~~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v~~~d~~~~~~~~~il~d~~~~~~~~~~~~~~i~~~~~~~~ 129 (341)
T 2p67_A 50 MPYCGNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDPSSPVTGGSILGDKTRMNDLARAEAAFIRPVPSSGH 129 (341)
T ss_dssp GGGCSCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC---------------CTTTTCTTEEEEEECC---
T ss_pred CcccCCCEEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEeecCCcCCCCcceecccchHHhhccCCCceeecCccccc
Confidence 345567789999999999999999999621 10 0000000 0000000
Q ss_pred --------------EEeCCEEEEEEecCCchhhHHhHHHHhcCCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcE
Q 030429 52 --------------VTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPL 117 (177)
Q Consensus 52 --------------~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 117 (177)
...+++++.+|||||....... ....+|++++|+|+++.+....... .. ...|.
T Consensus 130 l~g~~~~~~~~~~~~~~~~~~i~liDTpG~~~~~~~---~~~~aD~vl~Vvd~~~~~~~~~l~~---~~------~~~p~ 197 (341)
T 2p67_A 130 LGGASQRARELMLLCEAAGYDVVIVETVGVGQSETE---VARMVDCFISLQIAGGGDDLQGIKK---GL------MEVAD 197 (341)
T ss_dssp --CHHHHHHHHHHHHHHTTCSEEEEEEECCTTHHHH---HHTTCSEEEEEECC------CCCCH---HH------HHHCS
T ss_pred cchhHHHHHHHHHHhhccCCCEEEEeCCCccchHHH---HHHhCCEEEEEEeCCccHHHHHHHH---hh------hcccC
Confidence 0134678999999997655432 4678999999999975432211110 00 14688
Q ss_pred EEEeeCCCcccccCHHHHHHHh----Cccccc-C-CceeEEEeeecCCCChHHHHHHHHHHhh
Q 030429 118 LVLGNKIDKSEALSKQALVDQL----GLESIT-D-REVCCYMISCKDSINIDAVIDWLIKHSK 174 (177)
Q Consensus 118 iiv~nK~D~~~~~~~~~~~~~~----~~~~~~-~-~~~~~~~~Sa~~~~~i~~l~~~l~~~~~ 174 (177)
++|+||+|+.+........+.+ +..... . ...+++++||++|.|++++++.|.+.+.
T Consensus 198 ivv~NK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~gi~~L~~~l~~~~~ 260 (341)
T 2p67_A 198 LIVINKDDGDNHTNVAIARHMYESALHILRRKYDEWQPRVLTCSALEKRGIDEIWHAIIDFKT 260 (341)
T ss_dssp EEEECCCCTTCHHHHHHHHHHHHHHHHHSCCSBTTBCCEEEECBGGGTBSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCChHHHHHHHHHHHHHHHhccccccCCCCcEEEeeCCCCCCHHHHHHHHHHHHH
Confidence 9999999997643222221222 111100 0 1247899999999999999999988654
|
| >2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.71 E-value=1.1e-17 Score=125.91 Aligned_cols=158 Identities=16% Similarity=0.157 Sum_probs=72.3
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcCCCC-CCC-------CCccceeEEEE--EeC--CEEEEEEecCCchhhH------
Q 030429 10 KQEMELSLIGLQNAGKTSLVNTIATGGYS-EDM-------IPTVGFNMRKV--TKG--NVTIKLWDLGGQRRFR------ 71 (177)
Q Consensus 10 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~-~~~-------~~t~~~~~~~~--~~~--~~~~~~~D~~g~~~~~------ 71 (177)
.-.++|+++|++|||||||++++++..+. ... .++.......+ ... ...+++||++|...+.
T Consensus 29 ~vsf~I~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~~~~i~~v~q~~~~~~~Ltv~Dt~g~~~~~~~~~~~ 108 (418)
T 2qag_C 29 GFEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCW 108 (418)
T ss_dssp CCCEEEEEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCEEEEEECC------CEEEEEEECC-----------C
T ss_pred CCCEEEEEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCccceeeeeEEEEEecCCcccceeeeechhhhhhccchhhH
Confidence 34578999999999999999999976552 111 12222111111 112 2478999999975531
Q ss_pred -HhH------------------HHHhcCCCEEEEEEeCCCC-CCHHHHH-HHHHHHHcCCCCCCCcEEEEeeCCCccccc
Q 030429 72 -TMW------------------ERYCRGVSAILYVVDAADR-DSVPIAR-SELHELLMKPSLSGIPLLVLGNKIDKSEAL 130 (177)
Q Consensus 72 -~~~------------------~~~~~~~d~~i~v~d~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~ 130 (177)
... +.++.++++.+++|..... .+++... .++..+ . .+.|+++|+||+|+....
T Consensus 109 ~~i~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~~~lk~L-~----~~v~iIlVinK~Dll~~~ 183 (418)
T 2qag_C 109 QPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRL-H----EKVNIIPLIAKADTLTPE 183 (418)
T ss_dssp HHHHHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHHHHHHHH-T----TTSEEEEEEESTTSSCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHHHHHHHH-h----ccCcEEEEEEcccCccHH
Confidence 110 1123344443444443322 3455444 344444 2 268999999999997643
Q ss_pred CHHHHHHHhCcccccCCceeEEEeeecCCCChHHHHHHHHHHh
Q 030429 131 SKQALVDQLGLESITDREVCCYMISCKDSINIDAVIDWLIKHS 173 (177)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~ 173 (177)
+.....+.... .....+++++++|++++.++++++..+.+.+
T Consensus 184 ev~~~k~~i~~-~~~~~~i~~~~~sa~~~~~v~~~~~~l~~~i 225 (418)
T 2qag_C 184 ECQQFKKQIMK-EIQEHKIKIYEFPETDDEEENKLVKKIKDRL 225 (418)
T ss_dssp HHHHHHHHHHH-HHHHHTCCCCCCC-----------------C
T ss_pred HHHHHHHHHHH-HHHHcCCeEEeCCCCCCcCHHHHHHHHHhhC
Confidence 33222122111 1111235688999999999999888776643
|
| >3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.70 E-value=9.1e-17 Score=108.92 Aligned_cols=112 Identities=17% Similarity=0.247 Sum_probs=86.6
Q ss_pred cCCchhhHHhHHHHhcCCCEEEEEEeCCCCCCHHHHHHHH---HHHHcCCC-CCCCcEEEEeeCC-CcccccCHHHHHHH
Q 030429 64 LGGQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSEL---HELLMKPS-LSGIPLLVLGNKI-DKSEALSKQALVDQ 138 (177)
Q Consensus 64 ~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~---~~~~~~~~-~~~~~~iiv~nK~-D~~~~~~~~~~~~~ 138 (177)
.+||.+.+..|+.|+.++|++|||+|.+|.+.++ .+..+ ..++.... ..+.|++|++||. |+.......++.+.
T Consensus 109 ~GGQ~klRplWr~Yy~~TdglIfVVDSsD~~R~e-ak~EL~eL~~mL~ee~~L~gapLLVlANKqqDlp~Ams~~EI~e~ 187 (227)
T 3l82_B 109 QGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKRMPCFYLAHE 187 (227)
T ss_dssp --------CCHHHHHHHCSEEEEEEECBTTCCCC-HHHHHHHHHHHSCTTSSCSCSCEEEEEEESSTTSCBCCHHHHHHH
T ss_pred cCcHHHHHHHHHHHhcCCCEEEEEeccccHhHHH-HHHHHHHHHHHhcchhhhCCCeEEEEeCCCcCccCCCCHHHHHHH
Confidence 3488999999999999999999999999987665 66665 34444332 3678999999995 78888888999999
Q ss_pred hCcccccCCceeEEEeeecCCCChHHHHHHHHHHhhhcC
Q 030429 139 LGLESITDREVCCYMISCKDSINIDAVIDWLIKHSKTAK 177 (177)
Q Consensus 139 ~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~~ 177 (177)
+++... .+.+.+..|||.+|+|+.+-++||.+.+.+++
T Consensus 188 L~L~~l-~R~W~Iq~csA~TGeGL~EGLdWL~~~l~~k~ 225 (227)
T 3l82_B 188 LHLNLL-NHPWLVQDTEAETLTGFLNGIEWILEEVESKR 225 (227)
T ss_dssp TTGGGG-CSCEEEEEEETTTCTTHHHHHHHHTTTTTTC-
T ss_pred cCCcCC-CCCEEEEEeECCCCcCHHHHHHHHHHHHHhhc
Confidence 998766 58899999999999999999999999887653
|
| >1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2 | Back alignment and structure |
|---|
Probab=99.70 E-value=5.6e-16 Score=114.44 Aligned_cols=81 Identities=23% Similarity=0.296 Sum_probs=57.2
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCCCC--CCCccceeEEEEEeCC-----------------EEEEEEecCCchhhHH
Q 030429 12 EMELSLIGLQNAGKTSLVNTIATGGYSED--MIPTVGFNMRKVTKGN-----------------VTIKLWDLGGQRRFRT 72 (177)
Q Consensus 12 ~~~i~i~G~~~~GKSsli~~l~~~~~~~~--~~~t~~~~~~~~~~~~-----------------~~~~~~D~~g~~~~~~ 72 (177)
.++|+++|.||||||||+|++++...... ...|.+.....+..++ ..+.+|||||..++.+
T Consensus 2 ~~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g~v~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~a~ 81 (363)
T 1jal_A 2 GFKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGAS 81 (363)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEEEEecCCcccceeeeeecccceeeeEEEEEECCCCccccc
Confidence 36899999999999999999997663222 2234444443444333 5799999999876542
Q ss_pred h-------HHHHhcCCCEEEEEEeCCC
Q 030429 73 M-------WERYCRGVSAILYVVDAAD 92 (177)
Q Consensus 73 ~-------~~~~~~~~d~~i~v~d~~~ 92 (177)
. ...+++.+|++++|+|+++
T Consensus 82 ~~~gl~~~fl~~ir~ad~il~VvD~~~ 108 (363)
T 1jal_A 82 KGEGLGNKFLANIRETDAIGHVVRCFE 108 (363)
T ss_dssp HHGGGTCCHHHHHHTCSEEEEEEECSC
T ss_pred ccchHHHHHHHHHHhcCeEEEEEecCC
Confidence 1 2235788999999999986
|
| >4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.69 E-value=4.3e-16 Score=115.63 Aligned_cols=83 Identities=13% Similarity=0.161 Sum_probs=63.5
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhcCCCCC--CCCCccceeEEEEEeCCEEEEEEecCCchhhH-------HhHHHHhcCC
Q 030429 11 QEMELSLIGLQNAGKTSLVNTIATGGYSE--DMIPTVGFNMRKVTKGNVTIKLWDLGGQRRFR-------TMWERYCRGV 81 (177)
Q Consensus 11 ~~~~i~i~G~~~~GKSsli~~l~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~-------~~~~~~~~~~ 81 (177)
-..+|+++|.|+||||||+|+|++..... ....|.......+...+.+++++||||..... ......++.+
T Consensus 71 g~a~V~ivG~PNvGKSTL~n~Lt~~~~~v~~~pftT~~~~~g~~~~~~~~i~l~D~pGl~~~a~~~~~~g~~~l~~i~~a 150 (376)
T 4a9a_A 71 GVASVGFVGFPSVGKSTLLSKLTGTESEAAEYEFTTLVTVPGVIRYKGAKIQMLDLPGIIDGAKDGRGRGKQVIAVARTC 150 (376)
T ss_dssp SSEEEEEECCCCHHHHHHHHHHHSBCCCGGGTCSSCCCEEEEEEEETTEEEEEEECGGGCCC-----CHHHHHHHHHHHC
T ss_pred CCCeEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeeeeeEEEEeCCcEEEEEeCCCccCCchhhhHHHHHHHHHHHhc
Confidence 34799999999999999999999765432 23456677777888999999999999953221 1122346779
Q ss_pred CEEEEEEeCCCC
Q 030429 82 SAILYVVDAADR 93 (177)
Q Consensus 82 d~~i~v~d~~~~ 93 (177)
|++++|+|+++|
T Consensus 151 d~il~vvD~~~p 162 (376)
T 4a9a_A 151 NLLFIILDVNKP 162 (376)
T ss_dssp SEEEEEEETTSH
T ss_pred CccccccccCcc
Confidence 999999999875
|
| >3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis} | Back alignment and structure |
|---|
Probab=99.69 E-value=2.9e-17 Score=130.05 Aligned_cols=157 Identities=22% Similarity=0.266 Sum_probs=109.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHhc--C------CCCC-----C-------CCCccceeEEEEEeCCEEEEEEecCCchhhHH
Q 030429 13 MELSLIGLQNAGKTSLVNTIAT--G------GYSE-----D-------MIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRT 72 (177)
Q Consensus 13 ~~i~i~G~~~~GKSsli~~l~~--~------~~~~-----~-------~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~ 72 (177)
-||+|+|+.++|||||..+|+. + .... + ..-|+......+.++++.++++||||+.+|..
T Consensus 3 RNi~IiaHvD~GKTTL~e~LL~~~G~i~~~g~v~~g~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPGH~DF~~ 82 (638)
T 3j25_A 3 INIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQWENTKVNIIDTPGHMDFLA 82 (638)
T ss_dssp CCCEEECCSTTSSHHHHHHHHHHHTCCSSCSSCCCSCCSTTCSTTHHHHSSCSSCCCCCCBCSSCBCCCEECCCSSSTHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHcCCCccccccccCCcccCCcHHHHhCCCcEEeeeEEEEECCEEEEEEECCCcHHHHH
Confidence 4799999999999999999972 1 1110 0 11233344445667889999999999999999
Q ss_pred hHHHHhcCCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccCH---HHHHHHhCccc------
Q 030429 73 MWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSK---QALVDQLGLES------ 143 (177)
Q Consensus 73 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~---~~~~~~~~~~~------ 143 (177)
.....++-+|++++|+|+...-.... ...|...... ++|.++++||+|....+.. +++.+.++...
T Consensus 83 Ev~raL~~~DgavlVVDa~~GV~~qT-~~v~~~a~~~----~lp~i~~INKmDr~~a~~~~~~~~i~~~l~~~~~~~~~~ 157 (638)
T 3j25_A 83 EVYRSLSVLDGAILLISAKDGVQAQT-RILFHALRKM----GIPTIFFINKIDQNGIDLSTVYQDIKEKLSAEIVIKQKV 157 (638)
T ss_dssp HHHHHHTTCSEEECCEESSCTTCSHH-HHHHHHHHHH----TCSCEECCEECCSSSCCSHHHHHHHHHTTCCCCCCCCCC
T ss_pred HHHHHHHHhCEEEEEEeCCCCCcHHH-HHHHHHHHHc----CCCeEEEEeccccccCCHHHHHHHHHHHhCCCcccccee
Confidence 99999999999999999977543333 3444444343 7899999999998654321 22322222100
Q ss_pred --------------------------------------------------ccCCceeEEEeeecCCCChHHHHHHHHHHh
Q 030429 144 --------------------------------------------------ITDREVCCYMISCKDSINIDAVIDWLIKHS 173 (177)
Q Consensus 144 --------------------------------------------------~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~ 173 (177)
......|++..||.++.|++.|++.+.+.+
T Consensus 158 ~~~~~~~~~~~~~~~~~e~~~e~~d~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~Pv~~gSa~~~~Gv~~LLd~i~~~~ 237 (638)
T 3j25_A 158 ELYPNVCVTNFTESEQWDTVIEGNDDLLEKYMSGKSLEALELEQEESIRFQNCSLFPLYHGSAKSNIGIDNLIEVITNKF 237 (638)
T ss_dssp CSCGGGCCCCCCCHHHHHHHHHHHCHHHHHHHHHCCCCSHHHHHHHHHHHHHTSCCCCCCCCSTTCCSHHHHHHHHHHSC
T ss_pred EeeccccccccchhhhhhhhhcccHHHHhhhccCCccchHHHHHHHhhhhcccccccccccccccCCCchhHhhhhhccc
Confidence 011235788899999999999999998865
Q ss_pred h
Q 030429 174 K 174 (177)
Q Consensus 174 ~ 174 (177)
.
T Consensus 238 p 238 (638)
T 3j25_A 238 Y 238 (638)
T ss_dssp C
T ss_pred c
Confidence 3
|
| >4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=99.66 E-value=9e-15 Score=117.19 Aligned_cols=115 Identities=17% Similarity=0.176 Sum_probs=80.3
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHhc--------CCC------------CCCCCCccceeEEEEEe-------CCEEEEE
Q 030429 9 FKQEMELSLIGLQNAGKTSLVNTIAT--------GGY------------SEDMIPTVGFNMRKVTK-------GNVTIKL 61 (177)
Q Consensus 9 ~~~~~~i~i~G~~~~GKSsli~~l~~--------~~~------------~~~~~~t~~~~~~~~~~-------~~~~~~~ 61 (177)
.++--||+|+|+.++|||||..+|+. +.. .+...-|+......+.+ +++.+++
T Consensus 10 ~~~IRNi~IiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~~~~~~D~~~~E~eRGITI~s~~~s~~~~~~~~~~~~~~iNl 89 (709)
T 4fn5_A 10 INRYRNIGICAHVDAGKTTTTERVLFYTGVNHKLGEVHDGAATTDWMVQEQERGITITSAAVTTFWKGSRGQYDNYRVNV 89 (709)
T ss_dssp GGGEEEEEEECCSSSCHHHHHHHHHHHHHHHHHC------------------------CCEEEEEECCTTSCSCCEEEEE
T ss_pred hHHCeEEEEEcCCCCCHHHHHHHHHHhcCCCCcCceecCCCccCCChHHHHHcCCeEEeeeEEEEeccCcCCCCCEEEEE
Confidence 35667999999999999999999971 111 11111233333333332 3689999
Q ss_pred EecCCchhhHHhHHHHhcCCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccc
Q 030429 62 WDLGGQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSE 128 (177)
Q Consensus 62 ~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~ 128 (177)
+||||+.+|.......++-+|++++|+|+...-.... ...|...... ++|.++++||+|...
T Consensus 90 IDTPGHvDF~~Ev~~aLr~~DgavlvVDaveGV~~qT-~~v~~~a~~~----~lp~i~~iNKiDr~~ 151 (709)
T 4fn5_A 90 IDTPGHVDFTIEVERSLRVLDGAVVVFCGTSGVEPQS-ETVWRQANKY----GVPRIVYVNKMDRQG 151 (709)
T ss_dssp ECCCSCTTCHHHHHHHHHHCSEEEEEEETTTCSCHHH-HHHHHHHHHH----TCCEEEEEECSSSTT
T ss_pred EeCCCCcccHHHHHHHHHHhCeEEEEEECCCCCchhH-HHHHHHHHHc----CCCeEEEEccccccC
Confidence 9999999999999999999999999999976543332 3344444343 799999999999854
|
| >2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A* | Back alignment and structure |
|---|
Probab=99.65 E-value=1.8e-18 Score=120.63 Aligned_cols=61 Identities=21% Similarity=0.253 Sum_probs=43.9
Q ss_pred CCcEEEEeeCCCcccc--cCHHHHHHHhCcccccCCceeEEEeeecCCCChHHHHHHHHHHhhhcC
Q 030429 114 GIPLLVLGNKIDKSEA--LSKQALVDQLGLESITDREVCCYMISCKDSINIDAVIDWLIKHSKTAK 177 (177)
Q Consensus 114 ~~~~iiv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~~ 177 (177)
..|.++|+||+|+.+. ...++..+.+... ....+++++||++|.|++++|++|.+.+.+.|
T Consensus 164 ~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~~---~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~~~~ 226 (226)
T 2hf9_A 164 KTADLIVINKIDLADAVGADIKKMENDAKRI---NPDAEVVLLSLKTMEGFDKVLEFIEKSVKEVK 226 (226)
T ss_dssp TTCSEEEEECGGGHHHHTCCHHHHHHHHHHH---CTTSEEEECCTTTCTTHHHHHHHHHHHHHHCC
T ss_pred hcCCEEEEeccccCchhHHHHHHHHHHHHHh---CCCCeEEEEEecCCCCHHHHHHHHHHHHHhhC
Confidence 3577999999998653 2334433333211 23357999999999999999999999887654
|
| >2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A* | Back alignment and structure |
|---|
Probab=99.62 E-value=1.4e-15 Score=112.02 Aligned_cols=158 Identities=12% Similarity=0.109 Sum_probs=92.9
Q ss_pred ecccccceeEEEEEcCCCCCHHHHHHHHhc------CCCC---CCCCCc------------cc-----eeEEE-------
Q 030429 5 ISLFFKQEMELSLIGLQNAGKTSLVNTIAT------GGYS---EDMIPT------------VG-----FNMRK------- 51 (177)
Q Consensus 5 ~~~~~~~~~~i~i~G~~~~GKSsli~~l~~------~~~~---~~~~~t------------~~-----~~~~~------- 51 (177)
.++...+...++++|++|||||||++.+.+ +... .....+ ++ .....
T Consensus 48 i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i~~~d~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~ 127 (337)
T 2qm8_A 48 VLPQTGRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSSTRTGGSILGDKTRMARLAIDRNAFIRPSPSSG 127 (337)
T ss_dssp HGGGCCCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGGGGSSCCCSSCCGGGSTTGGGCTTEEEECCCCCS
T ss_pred CCcccCCCeEEEEECCCCCCHHHHHHHHHHhhhhCCCEEEEEEEcCcccccccchHHHhhhheeeccCcccccccCcccc
Confidence 456677788999999999999999999973 2210 000000 00 00000
Q ss_pred ---------------EEeCCEEEEEEecCCchhhHHhHHHHhcCCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCc
Q 030429 52 ---------------VTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIP 116 (177)
Q Consensus 52 ---------------~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (177)
....+.++.++||||...... .....+|.+++++|++..+....+.... ...+
T Consensus 128 ~l~G~tr~~~e~~~~~~~~~~~~iliDT~Gi~~~~~---~v~~~~d~vl~v~d~~~~~~~~~i~~~i---------~~~~ 195 (337)
T 2qm8_A 128 TLGGVAAKTRETMLLCEAAGFDVILVETVGVGQSET---AVADLTDFFLVLMLPGAGDELQGIKKGI---------FELA 195 (337)
T ss_dssp SHHHHHHHHHHHHHHHHHTTCCEEEEEECSSSSCHH---HHHTTSSEEEEEECSCC------CCTTH---------HHHC
T ss_pred cccchHHHHHHHHHHHhcCCCCEEEEECCCCCcchh---hHHhhCCEEEEEEcCCCcccHHHHHHHH---------hccc
Confidence 112578899999999754432 2346799999999986432211110000 1235
Q ss_pred EEEEeeCCCcccccC-----HHHHHHHhCccccc--CCceeEEEeeecCCCChHHHHHHHHHHhh
Q 030429 117 LLVLGNKIDKSEALS-----KQALVDQLGLESIT--DREVCCYMISCKDSINIDAVIDWLIKHSK 174 (177)
Q Consensus 117 ~iiv~nK~D~~~~~~-----~~~~~~~~~~~~~~--~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~ 174 (177)
.++++||+|+..... .+++...+...... ....+++++||+++.|++++++.|.+...
T Consensus 196 ~ivvlNK~Dl~~~~~~s~~~~~~l~~a~~l~~~~~~~~~~~vl~~Sal~g~gi~~L~~~I~~~~~ 260 (337)
T 2qm8_A 196 DMIAVNKADDGDGERRASAAASEYRAALHILTPPSATWTPPVVTISGLHGKGLDSLWSRIEDHRS 260 (337)
T ss_dssp SEEEEECCSTTCCHHHHHHHHHHHHHHHTTBCCSBTTBCCCEEEEBTTTTBSHHHHHHHHHHHHH
T ss_pred cEEEEEchhccCchhHHHHHHHHHHHHHHhccccccCCCCCEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 678889999754211 12222222211100 00236888999999999999999988654
|
| >2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A | Back alignment and structure |
|---|
Probab=99.61 E-value=1.2e-14 Score=107.82 Aligned_cols=80 Identities=21% Similarity=0.281 Sum_probs=55.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCC--CCCCCccceeEEEEEe---------------------CCEEEEEEecCCchh
Q 030429 13 MELSLIGLQNAGKTSLVNTIATGGYS--EDMIPTVGFNMRKVTK---------------------GNVTIKLWDLGGQRR 69 (177)
Q Consensus 13 ~~i~i~G~~~~GKSsli~~l~~~~~~--~~~~~t~~~~~~~~~~---------------------~~~~~~~~D~~g~~~ 69 (177)
++|+++|.||||||||+|++.+.... .....|...+...... .+..+.+|||||...
T Consensus 2 ~~v~IVG~pnvGKSTL~n~L~~~~~~v~~~p~~Ti~pn~g~~~v~~~~l~~~~~~~~~~~~~~~~~~~~i~lvDtpGl~~ 81 (368)
T 2dby_A 2 LAVGIVGLPNVGKSTLFNALTRANALAANYPFATIDKNVGVVPLEDERLYALQRTFAKGERVPPVVPTHVEFVDIAGLVK 81 (368)
T ss_dssp CSEEEECCSSSSHHHHHHHHHHHHTTCSSCCGGGGSTTEEEEECCCHHHHHHHHHHCBTTBCCCEECCEEEEEECCSCCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeccceeeEecChHHHHHHHHHhcccccccccCCceEEEEECCCccc
Confidence 57999999999999999999865421 1111233333333222 245799999999765
Q ss_pred hH-------HhHHHHhcCCCEEEEEEeCCC
Q 030429 70 FR-------TMWERYCRGVSAILYVVDAAD 92 (177)
Q Consensus 70 ~~-------~~~~~~~~~~d~~i~v~d~~~ 92 (177)
+. .....+++.+|++++|+|+++
T Consensus 82 ~a~~~~~lg~~fl~~ir~ad~ii~VvD~~~ 111 (368)
T 2dby_A 82 GAHKGEGLGNQFLAHIREVAAIAHVLRCFP 111 (368)
T ss_dssp CCCSSSCTTHHHHHHHHTCSEEEEEEECCC
T ss_pred cccccchHHHHHHHHHHhCCEEEEEEECCC
Confidence 42 223345789999999999986
|
| >3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.59 E-value=2.5e-15 Score=106.63 Aligned_cols=113 Identities=17% Similarity=0.250 Sum_probs=89.2
Q ss_pred ecCCchhhHHhHHHHhcCCCEEEEEEeCCCCCCHHHHHHHHH---HHHcCCC-CCCCcEEEEeeC-CCcccccCHHHHHH
Q 030429 63 DLGGQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELH---ELLMKPS-LSGIPLLVLGNK-IDKSEALSKQALVD 137 (177)
Q Consensus 63 D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~---~~~~~~~-~~~~~~iiv~nK-~D~~~~~~~~~~~~ 137 (177)
|.+||.+.+..|+.|+.++|++|+|+|.+|.+.++ ....+. .++.... ..+.|++|++|| .|+.......++.+
T Consensus 193 ~~GGQ~~lRplWr~Yy~~tdglIfVVDSsDreRle-ak~EL~eL~~mL~e~~~l~~apLLVfANKkQDlp~Ams~~EI~e 271 (312)
T 3l2o_B 193 QQGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKRMPCFYLAH 271 (312)
T ss_dssp ----CCCCCHHHHHHHHHCSEEEECCBCBTTCCCC-HHHHHHHHHHHHCHHHHCTTCCEEEEEEESSTTSCBCCHHHHHH
T ss_pred CCCCHHHHHHHHHHHhcCCCEEEEEecCCcHhHHH-HHHHHHHHHHHhcchhhcCCCeEEEEeCCcccccCCCCHHHHHH
Confidence 34688999999999999999999999999988765 444433 3333211 257899999996 68988888899999
Q ss_pred HhCcccccCCceeEEEeeecCCCChHHHHHHHHHHhhhcC
Q 030429 138 QLGLESITDREVCCYMISCKDSINIDAVIDWLIKHSKTAK 177 (177)
Q Consensus 138 ~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~~ 177 (177)
.+++... .+.+.+..|||.+|+|+.+-++||.+.+.+++
T Consensus 272 ~L~L~~l-~r~W~Iq~csA~tGeGL~EGldWL~~~l~~k~ 310 (312)
T 3l2o_B 272 ELHLNLL-NHPWLVQDTEAETLTGFLNGIEWILEEVESKR 310 (312)
T ss_dssp HTTGGGG-CSCEEEEEEETTTCTTHHHHHHHHHHHSCC--
T ss_pred HcCCccC-CCcEEEEecccCCCcCHHHHHHHHHHHHHhhc
Confidence 9998766 47899999999999999999999999987653
|
| >2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.43 E-value=3.7e-13 Score=100.39 Aligned_cols=87 Identities=18% Similarity=0.302 Sum_probs=52.3
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHhcCCCCCC--CCCccceeEEEEEeC-----------------CEEEEEEecCCchh
Q 030429 9 FKQEMELSLIGLQNAGKTSLVNTIATGGYSED--MIPTVGFNMRKVTKG-----------------NVTIKLWDLGGQRR 69 (177)
Q Consensus 9 ~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~--~~~t~~~~~~~~~~~-----------------~~~~~~~D~~g~~~ 69 (177)
....++|+++|.+|||||||+|++.+...... ...|.......+... ...+.+||+||...
T Consensus 19 i~~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~~r~~~l~~~~~p~~~~~~~i~lvDtpGl~~ 98 (396)
T 2ohf_A 19 FGTSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDERFDFLCQYHKPASKIPAFLNVVDIAGLVK 98 (396)
T ss_dssp SSSCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCCHHHHHHHHHHCCSEEECCEEEEEECCC---
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECCccceeeccccCcccccccccEEEECCCccc
Confidence 35678999999999999999999997654222 223444444444432 23599999999876
Q ss_pred hHH-------hHHHHhcCCCEEEEEEeCCCCCC
Q 030429 70 FRT-------MWERYCRGVSAILYVVDAADRDS 95 (177)
Q Consensus 70 ~~~-------~~~~~~~~~d~~i~v~d~~~~~~ 95 (177)
+.+ ....+++.+|++++|+|+++.+.
T Consensus 99 ~as~~~glg~~~l~~ir~aD~Il~VvD~~~~~~ 131 (396)
T 2ohf_A 99 GAHNGQGLGNAFLSHISACDGIFHLTRAFEDDD 131 (396)
T ss_dssp --------CCHHHHHHHTSSSEEEEEEC-----
T ss_pred ccchhhHHHHHHHHHHHhcCeEEEEEecCCCcc
Confidence 554 34567889999999999986443
|
| >2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.34 E-value=1.1e-12 Score=95.15 Aligned_cols=96 Identities=15% Similarity=0.093 Sum_probs=71.8
Q ss_pred chhhHHhHHHHhcCCCEEEEEEeCCCCC-CHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccC---HHHHHHHhCcc
Q 030429 67 QRRFRTMWERYCRGVSAILYVVDAADRD-SVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALS---KQALVDQLGLE 142 (177)
Q Consensus 67 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~---~~~~~~~~~~~ 142 (177)
++++..+.+.++.++|++++|+|++++. ++..+..|+..+.. .++|+++|+||+|+.+... .+++.+.+..
T Consensus 66 ~er~~~l~r~~~~naD~vliV~d~~~p~~s~~~l~~~l~~~~~----~~~~~ilV~NK~DL~~~~~v~~~~~~~~~~~~- 140 (302)
T 2yv5_A 66 EERKNLLIRPKVANVDRVIIVETLKMPEFNNYLLDNMLVVYEY----FKVEPVIVFNKIDLLNEEEKKELERWISIYRD- 140 (302)
T ss_dssp CCCSCEEETTEEESCCEEEEEECSTTTTCCHHHHHHHHHHHHH----TTCEEEEEECCGGGCCHHHHHHHHHHHHHHHH-
T ss_pred CChHHHHhHHHHHhcCEEEEEEECCCCCCCHHHHHHHHHHHHh----CCCCEEEEEEcccCCCccccHHHHHHHHHHHH-
Confidence 5666666677899999999999999986 88887888876544 3789999999999976531 2222222211
Q ss_pred cccCCceeEEEeeecCCCChHHHHHHHHH
Q 030429 143 SITDREVCCYMISCKDSINIDAVIDWLIK 171 (177)
Q Consensus 143 ~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~ 171 (177)
.+.+++++||++|.|++++++.+..
T Consensus 141 ----~g~~~~~~SA~~g~gi~~L~~~l~G 165 (302)
T 2yv5_A 141 ----AGYDVLKVSAKTGEGIDELVDYLEG 165 (302)
T ss_dssp ----TTCEEEECCTTTCTTHHHHHHHTTT
T ss_pred ----CCCeEEEEECCCCCCHHHHHhhccC
Confidence 1247999999999999999987643
|
| >2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A | Back alignment and structure |
|---|
Probab=99.23 E-value=5.1e-11 Score=91.69 Aligned_cols=155 Identities=17% Similarity=0.160 Sum_probs=88.9
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHh------cCCC---CCCC-CCc-----------cceeEEEE----------------
Q 030429 10 KQEMELSLIGLQNAGKTSLVNTIA------TGGY---SEDM-IPT-----------VGFNMRKV---------------- 52 (177)
Q Consensus 10 ~~~~~i~i~G~~~~GKSsli~~l~------~~~~---~~~~-~~t-----------~~~~~~~~---------------- 52 (177)
.+...|+++|.+||||||++++|. +... ..+. .+. .++.+...
T Consensus 99 ~~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r~aa~~qL~~~~~~~~i~v~~~~~~~dp~~i~~~al~~ 178 (504)
T 2j37_W 99 GKQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEK 178 (504)
T ss_dssp S--EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSSHHHHHHHHHHHHHTCCEEECCCCSCHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccchhHHHHHHHHhhccCceEEccCCCCCHHHHHHHHHHH
Confidence 456789999999999999999998 3221 0000 000 01111110
Q ss_pred -EeCCEEEEEEecCCchhhH----HhHHHH--hcCCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcE-EEEeeCC
Q 030429 53 -TKGNVTIKLWDLGGQRRFR----TMWERY--CRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPL-LVLGNKI 124 (177)
Q Consensus 53 -~~~~~~~~~~D~~g~~~~~----~~~~~~--~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~-iiv~nK~ 124 (177)
...++++.++||||..... ...... +..+|.+++|+|++...........+.. ..|+ .+|+||+
T Consensus 179 ~~~~~~DvvIIDTpG~~~~~~~l~~el~~~~~~i~pd~vllVvDa~~g~~~~~~a~~~~~--------~~~i~gvVlNK~ 250 (504)
T 2j37_W 179 FKNENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQACEAQAKAFKD--------KVDVASVIVTKL 250 (504)
T ss_dssp HHHTTCCEEEEEECCCCTTCHHHHHHHHHHHHHHCCSEEEEEEETTCCTTHHHHHHHHHH--------HHCCCCEEEECT
T ss_pred HHHCCCcEEEEeCCCCcccchhHHHHHHHHHhhhcCceEEEEEeccccccHHHHHHHHHh--------hcCceEEEEeCC
Confidence 1156889999999965321 111111 2268999999999775332222111111 1464 7889999
Q ss_pred CcccccCH-HHHHHHhCccc--------c--cCCceeEEEeeecCCCC-hHHHHHHHHHH
Q 030429 125 DKSEALSK-QALVDQLGLES--------I--TDREVCCYMISCKDSIN-IDAVIDWLIKH 172 (177)
Q Consensus 125 D~~~~~~~-~~~~~~~~~~~--------~--~~~~~~~~~~Sa~~~~~-i~~l~~~l~~~ 172 (177)
|....... ....+.++... . .....+.+++|+..|.| +++|++++.+.
T Consensus 251 D~~~~~g~~l~~~~~~g~PI~fig~ge~~~dl~~f~~~~~vsal~G~Gdi~~Lie~i~e~ 310 (504)
T 2j37_W 251 DGHAKGGGALSAVAATKSPIIFIGTGEHIDDFEPFKTQPFISKLLGMGDIEGLIDKVNEL 310 (504)
T ss_dssp TSCCCCTHHHHHHHHHCCCEEEEECSSSTTCEECCTHHHHHHCCCTTTTTTTTHHHHTTT
T ss_pred ccccchHHHHHHHHHhCCCeEEeccccchhhhhccCcceeeehhcCCCcHHHHHHHHHHH
Confidence 98754332 23333333211 0 01122445689999999 99999998765
|
| >1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2 | Back alignment and structure |
|---|
Probab=99.19 E-value=1.2e-10 Score=86.94 Aligned_cols=84 Identities=21% Similarity=0.343 Sum_probs=60.1
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHhcCCC-CCC--CCCccceeEEEEEeCC-----------------EEEEEEecCCch
Q 030429 9 FKQEMELSLIGLQNAGKTSLVNTIATGGY-SED--MIPTVGFNMRKVTKGN-----------------VTIKLWDLGGQR 68 (177)
Q Consensus 9 ~~~~~~i~i~G~~~~GKSsli~~l~~~~~-~~~--~~~t~~~~~~~~~~~~-----------------~~~~~~D~~g~~ 68 (177)
.+...+++++|++|+|||||+|.+++... ... ...|...+...+...+ ..+.+||+||..
T Consensus 17 v~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl~ 96 (392)
T 1ni3_A 17 PGNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLT 96 (392)
T ss_dssp SSSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGC
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEeccccc
Confidence 45578999999999999999999997654 222 2224555555555443 468999999943
Q ss_pred h-------hHHhHHHHhcCCCEEEEEEeCCC
Q 030429 69 R-------FRTMWERYCRGVSAILYVVDAAD 92 (177)
Q Consensus 69 ~-------~~~~~~~~~~~~d~~i~v~d~~~ 92 (177)
. ........++.+|++++|+|+.+
T Consensus 97 ~~~s~~e~L~~~fl~~ir~~d~il~Vvd~~~ 127 (392)
T 1ni3_A 97 KGASTGVGLGNAFLSHVRAVDAIYQVVRAFD 127 (392)
T ss_dssp CCCCSSSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred cCCcHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 2 22334556788999999999864
|
| >1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A* | Back alignment and structure |
|---|
Probab=99.17 E-value=4.6e-10 Score=84.44 Aligned_cols=158 Identities=16% Similarity=0.230 Sum_probs=85.8
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCcc-cee----EEEEEeCC-EEEEEEecCCchhh----HHhHH-HHhc
Q 030429 11 QEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTV-GFN----MRKVTKGN-VTIKLWDLGGQRRF----RTMWE-RYCR 79 (177)
Q Consensus 11 ~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~-~~~----~~~~~~~~-~~~~~~D~~g~~~~----~~~~~-~~~~ 79 (177)
....++++|++|+|||||+|.+.+-.......-+. +.. ...++... ..+.+||++|.... ..... ..+.
T Consensus 68 ~~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~~~~v~q~~~~~~ltv~D~~g~~~~~~~~~~~L~~~~L~ 147 (413)
T 1tq4_A 68 SVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHPNIPNVVFWDLPGIGSTNFPPDTYLEKMKFY 147 (413)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEECSSCTTEEEEECCCGGGSSCCHHHHHHHTTGG
T ss_pred CCeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecceeEEeccccccCCeeehHhhcccchHHHHHHHHHHcCCC
Confidence 34589999999999999999998632211110000 000 11122222 25788999985321 11111 1234
Q ss_pred CCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcc---------cccCHHHHHHHhCccc-----cc
Q 030429 80 GVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKS---------EALSKQALVDQLGLES-----IT 145 (177)
Q Consensus 80 ~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~---------~~~~~~~~~~~~~~~~-----~~ 145 (177)
+.+..+. ++... +...+..+...+.. .++|+++|.||.|+. +....+++.+.+.... ..
T Consensus 148 ~~~~~~~-lS~G~---~~kqrv~la~aL~~---~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~~ 220 (413)
T 1tq4_A 148 EYDFFII-ISATR---FKKNDIDIAKAISM---MKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFREN 220 (413)
T ss_dssp GCSEEEE-EESSC---CCHHHHHHHHHHHH---TTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHT
T ss_pred ccCCeEE-eCCCC---ccHHHHHHHHHHHh---cCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHHHHhc
Confidence 4455554 66642 12222233333232 268999999999964 1222333333322111 00
Q ss_pred -CCceeEEEeee--cCCCChHHHHHHHHHHhhh
Q 030429 146 -DREVCCYMISC--KDSINIDAVIDWLIKHSKT 175 (177)
Q Consensus 146 -~~~~~~~~~Sa--~~~~~i~~l~~~l~~~~~~ 175 (177)
.....++.+|+ .++.|++++.+.+.+.+.+
T Consensus 221 g~~~~~iiliSsh~l~~~~~e~L~d~I~~~Lpe 253 (413)
T 1tq4_A 221 GIAEPPIFLLSNKNVCHYDFPVLMDKLISDLPI 253 (413)
T ss_dssp TCSSCCEEECCTTCTTSTTHHHHHHHHHHHSCG
T ss_pred CCCCCcEEEEecCcCCccCHHHHHHHHHHhCcc
Confidence 11235788999 5566799999999987754
|
| >2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.13 E-value=2.1e-10 Score=86.31 Aligned_cols=143 Identities=11% Similarity=0.146 Sum_probs=69.9
Q ss_pred ccccce--eEEEEEcCCCCCHHHHHHHHhcCCCCCCCC----CccceeEEE--EEeCC--EEEEEEecCCchhh------
Q 030429 7 LFFKQE--MELSLIGLQNAGKTSLVNTIATGGYSEDMI----PTVGFNMRK--VTKGN--VTIKLWDLGGQRRF------ 70 (177)
Q Consensus 7 ~~~~~~--~~i~i~G~~~~GKSsli~~l~~~~~~~~~~----~t~~~~~~~--~~~~~--~~~~~~D~~g~~~~------ 70 (177)
+..+.. ++++|+|++|+|||||++.+++..+..... +........ ....+ ..+.++|++|....
T Consensus 35 l~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~l~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~D~~~~g~~~~~~~~ 114 (427)
T 2qag_B 35 KSVSQGFCFNILCVGETGLGKSTLMDTLFNTKFEGEPATHTQPGVQLQSNTYDLQESNVRLKLTIVSTVGFGDQINKEDS 114 (427)
T ss_dssp HSCC-CCEEEEEEECSTTSSSHHHHHHHHTSCC-------CCSSCEEEEEEEEEEC--CEEEEEEEEEECCCC-CCHHHH
T ss_pred eEecCCCeeEEEEECCCCCCHHHHHHHHhCccccCCcCCCCCccceEeeEEEEeecCccccccchhhhhhhhhccccchh
Confidence 344444 459999999999999999998764322111 111111111 12222 36889999984321
Q ss_pred --------HHhH----HHHh---------cCC--CE-EEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCc
Q 030429 71 --------RTMW----ERYC---------RGV--SA-ILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDK 126 (177)
Q Consensus 71 --------~~~~----~~~~---------~~~--d~-~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~ 126 (177)
...+ ..+. .++ |+ +.++.|++.+-+ .....+...+. .+.|+|+|.||+|.
T Consensus 115 ~~~i~~~i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~--~~Dieilk~L~----~~~~vI~Vi~KtD~ 188 (427)
T 2qag_B 115 YKPIVEFIDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLK--SLDLVTMKKLD----SKVNIIPIIAKADA 188 (427)
T ss_dssp SHHHHHHHHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---C--HHHHHHHHHTC----SCSEEEEEESCGGG
T ss_pred hhHHHHHHHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCC--HHHHHHHHHHh----hCCCEEEEEcchhc
Confidence 1111 1111 122 33 555666543322 22223333322 47899999999998
Q ss_pred ccccCHHHHHHHhCcccccCCceeEEEeee
Q 030429 127 SEALSKQALVDQLGLESITDREVCCYMISC 156 (177)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 156 (177)
....+...+.+.+.. .....+++++++|.
T Consensus 189 Lt~~E~~~l~~~I~~-~L~~~gi~I~~is~ 217 (427)
T 2qag_B 189 ISKSELTKFKIKITS-ELVSNGVQIYQFPT 217 (427)
T ss_dssp SCHHHHHHHHHHHHH-HHBTTBCCCCCCC-
T ss_pred cchHHHHHHHHHHHH-HHHHcCCcEEecCC
Confidence 876554444433321 11123445555553
|
| >3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str} | Back alignment and structure |
|---|
Probab=99.11 E-value=4.6e-11 Score=88.94 Aligned_cols=102 Identities=16% Similarity=0.130 Sum_probs=67.6
Q ss_pred CchhhHHhHHHHhcCCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccC-HHHHHHHhCc--c
Q 030429 66 GQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALS-KQALVDQLGL--E 142 (177)
Q Consensus 66 g~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~-~~~~~~~~~~--~ 142 (177)
.+++|+..+..+.+.++++++|+|++++. ..|...+.... .++|+++|+||+|+.+... .++..+.+.. .
T Consensus 55 ~~e~f~~~l~~i~~~~~~il~VvD~~d~~-----~~~~~~l~~~~--~~~p~ilV~NK~DL~~~~~~~~~~~~~l~~~~~ 127 (368)
T 3h2y_A 55 TDDDFLRILNGIGKSDALVVKIVDIFDFN-----GSWLPGLHRFV--GNNKVLLVGNKADLIPKSVKHDKVKHWMRYSAK 127 (368)
T ss_dssp -CHHHHHHHHHHHHSCCEEEEEEETTSHH-----HHCCTTHHHHS--SSSCEEEEEECGGGSCTTSCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhccCcEEEEEEECCCCc-----ccHHHHHHHHh--CCCcEEEEEEChhcCCcccCHHHHHHHHHHHHH
Confidence 45889999999999999999999998742 22322222221 3689999999999976432 2222221110 0
Q ss_pred cccCCceeEEEeeecCCCChHHHHHHHHHHhh
Q 030429 143 SITDREVCCYMISCKDSINIDAVIDWLIKHSK 174 (177)
Q Consensus 143 ~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~ 174 (177)
....+...++++||++|.|++++++.|.+...
T Consensus 128 ~~g~~~~~v~~iSA~~g~gi~~L~~~l~~~~~ 159 (368)
T 3h2y_A 128 QLGLKPEDVFLISAAKGQGIAELADAIEYYRG 159 (368)
T ss_dssp HTTCCCSEEEECCTTTCTTHHHHHHHHHHHHT
T ss_pred HcCCCcccEEEEeCCCCcCHHHHHhhhhhhcc
Confidence 01111236899999999999999999987653
|
| >3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.10 E-value=1.6e-09 Score=77.38 Aligned_cols=116 Identities=20% Similarity=0.259 Sum_probs=62.8
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCCCC---------CCCccceeEEEE--EeC--CEEEEEEecCCchh---------
Q 030429 12 EMELSLIGLQNAGKTSLVNTIATGGYSED---------MIPTVGFNMRKV--TKG--NVTIKLWDLGGQRR--------- 69 (177)
Q Consensus 12 ~~~i~i~G~~~~GKSsli~~l~~~~~~~~---------~~~t~~~~~~~~--~~~--~~~~~~~D~~g~~~--------- 69 (177)
.++++++|++|+|||||++.+++...... ...+.......+ +.. ...+.++|++|-..
T Consensus 2 ~f~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~~~~ 81 (270)
T 3sop_A 2 DFNIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNENCWE 81 (270)
T ss_dssp EEEEEEEESSSSSHHHHHHHHHHHHC------------CCCCCSCCEEEESCC----CCEEEEECCCC--CCSBCTTCSH
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhhcccHHHHH
Confidence 47899999999999999999985322111 011111111111 111 13678999998311
Q ss_pred -hH--------HhHHHH----------hcCCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccc
Q 030429 70 -FR--------TMWERY----------CRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEAL 130 (177)
Q Consensus 70 -~~--------~~~~~~----------~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~ 130 (177)
.. ...... +..++++++++|.... .+......+...+.. ..++++|.||+|.....
T Consensus 82 ~i~~~~~~~~~~~~~~~LS~G~~qrv~iaRal~~lllldep~~-gL~~lD~~~l~~L~~----~~~vI~Vi~K~D~lt~~ 156 (270)
T 3sop_A 82 PIEKYINEQYEKFLKEEVNIARKKRIPDTRVHCCLYFISPTGH-SLRPLDLEFMKHLSK----VVNIIPVIAKADTMTLE 156 (270)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTCCSSCCCCSCCEEEEEECCCSS-SCCHHHHHHHHHHHT----TSEEEEEETTGGGSCHH
T ss_pred HHHHHHHHHHHhhhHHhcCcccchhhhhheeeeeeEEEecCCC-cCCHHHHHHHHHHHh----cCcEEEEEeccccCCHH
Confidence 00 000111 2235888899986422 222222222333233 28999999999988754
Q ss_pred CH
Q 030429 131 SK 132 (177)
Q Consensus 131 ~~ 132 (177)
+.
T Consensus 157 e~ 158 (270)
T 3sop_A 157 EK 158 (270)
T ss_dssp HH
T ss_pred HH
Confidence 43
|
| >1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.09 E-value=3.1e-10 Score=81.51 Aligned_cols=100 Identities=16% Similarity=0.156 Sum_probs=69.7
Q ss_pred ecCCch-hhHHhHHHHhcCCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccCHHHHHHHhCc
Q 030429 63 DLGGQR-RFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGL 141 (177)
Q Consensus 63 D~~g~~-~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~ 141 (177)
..||+. .........+..+|+++.|+|+.++.+..+ ..+..++ .++|.++|+||+|+.+....+.+.+.+..
T Consensus 5 w~PGhm~ka~~~~~~~l~~aDvVl~VvDAr~p~~~~~--~~l~~~l-----~~kp~ilVlNK~DL~~~~~~~~~~~~~~~ 77 (282)
T 1puj_A 5 WFPGHMAKARREVTEKLKLIDIVYELVDARIPMSSRN--PMIEDIL-----KNKPRIMLLNKADKADAAVTQQWKEHFEN 77 (282)
T ss_dssp ----CTTHHHHHHHHHGGGCSEEEEEEETTSTTTTSC--HHHHHHC-----SSSCEEEEEECGGGSCHHHHHHHHHHHHT
T ss_pred CCchHHHHHHHHHHHHHhhCCEEEEEEeCCCCCccCC--HHHHHHH-----CCCCEEEEEECcccCCHHHHHHHHHHHHh
Confidence 578875 555667778999999999999998876642 1122222 36899999999999875433344444321
Q ss_pred ccccCCceeEEEeeecCCCChHHHHHHHHHHhh
Q 030429 142 ESITDREVCCYMISCKDSINIDAVIDWLIKHSK 174 (177)
Q Consensus 142 ~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~ 174 (177)
.+.+++++||+++.|++++++.+.+.+.
T Consensus 78 -----~g~~~i~iSA~~~~gi~~L~~~i~~~l~ 105 (282)
T 1puj_A 78 -----QGIRSLSINSVNGQGLNQIVPASKEILQ 105 (282)
T ss_dssp -----TTCCEEECCTTTCTTGGGHHHHHHHHHH
T ss_pred -----cCCcEEEEECCCcccHHHHHHHHHHHHH
Confidence 2236899999999999999999887764
|
| >3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus} | Back alignment and structure |
|---|
Probab=99.07 E-value=2.2e-11 Score=90.72 Aligned_cols=116 Identities=12% Similarity=0.104 Sum_probs=65.6
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcC------CCCCCCCCccceeEEEEEeCCEEEEEEecCCchhhH--------HhHHHH
Q 030429 12 EMELSLIGLQNAGKTSLVNTIATG------GYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRFR--------TMWERY 77 (177)
Q Consensus 12 ~~~i~i~G~~~~GKSsli~~l~~~------~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~--------~~~~~~ 77 (177)
..+|+++|.+|+|||||+|++.+. .......+........+..+ ..+.++||||..... .....+
T Consensus 162 ~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~gtT~~~~~~~~~-~~~~liDtPG~~~~~~~~~~l~~~~l~~~ 240 (369)
T 3ec1_A 162 GGDVYVVGCTNVGKSTFINRIIEEATGKGNVITTSYFPGTTLDMIEIPLE-SGATLYDTPGIINHHQMAHFVDARDLKII 240 (369)
T ss_dssp TSCEEEECCTTSSHHHHHHHHHHHHHHTTCCCEEEECTTSSCEEEEEECS-TTCEEEECCSCCCCSSGGGGSCTTTHHHH
T ss_pred cCcEEEEcCCCCchHHHHHHHHhhccCCccceeecCCCCeEEeeEEEEeC-CCeEEEeCCCcCcHHHHHHHHhHHHHHHH
Confidence 468999999999999999999865 11111111111122222222 137889999943221 111222
Q ss_pred h--cCCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccCHH
Q 030429 78 C--RGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQ 133 (177)
Q Consensus 78 ~--~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~ 133 (177)
+ ...+.++++++....-....+.. +......+.|+++++||.|.......+
T Consensus 241 ~~~~~i~~~~~~l~~~~~~~~g~l~~-----l~~l~~~~~~~~~v~~k~d~~~~~~~~ 293 (369)
T 3ec1_A 241 TPKREIHPRVYQLNEGQTLFFGGLAR-----LDYIKGGRRSFVCYMANELTVHRTKLE 293 (369)
T ss_dssp SCSSCCCCEEEEECTTEEEEETTTEE-----EEEEESSSEEEEEEECTTSCEEEEEGG
T ss_pred hcccccCceEEEEcCCceEEECCEEE-----EEEccCCCceEEEEecCCcccccccHH
Confidence 2 56899999999832100000000 111222467999999999987654433
|
| >3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus} | Back alignment and structure |
|---|
Probab=99.07 E-value=8.9e-11 Score=87.44 Aligned_cols=103 Identities=18% Similarity=0.230 Sum_probs=67.8
Q ss_pred CchhhHHhHHHHhcCCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccC-HHHHHHHhCc--c
Q 030429 66 GQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALS-KQALVDQLGL--E 142 (177)
Q Consensus 66 g~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~-~~~~~~~~~~--~ 142 (177)
.+++|++.+..+...++++++|+|++++.+ .....+... . .+.|+++|+||+|+.+... .+...+.+.. .
T Consensus 57 ~~e~f~~~L~~~~~~~~lil~VvD~~d~~~--s~~~~l~~~---l--~~~piilV~NK~DLl~~~~~~~~~~~~l~~~~~ 129 (369)
T 3ec1_A 57 DDDDFLSMLHRIGESKALVVNIVDIFDFNG--SFIPGLPRF---A--ADNPILLVGNKADLLPRSVKYPKLLRWMRRMAE 129 (369)
T ss_dssp --CHHHHHHHHHHHHCCEEEEEEETTCSGG--GCCSSHHHH---C--TTSCEEEEEECGGGSCTTCCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhhccCcEEEEEEECCCCCC--chhhHHHHH---h--CCCCEEEEEEChhcCCCccCHHHHHHHHHHHHH
Confidence 368899999998899999999999998752 111111222 1 3689999999999976532 2222221110 0
Q ss_pred cccCCceeEEEeeecCCCChHHHHHHHHHHhhh
Q 030429 143 SITDREVCCYMISCKDSINIDAVIDWLIKHSKT 175 (177)
Q Consensus 143 ~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~ 175 (177)
....+...++.+||++|.|++++++.+.+....
T Consensus 130 ~~g~~~~~v~~iSA~~g~gi~~L~~~I~~~~~~ 162 (369)
T 3ec1_A 130 ELGLCPVDVCLVSAAKGIGMAKVMEAINRYREG 162 (369)
T ss_dssp TTTCCCSEEEECBTTTTBTHHHHHHHHHHHHTT
T ss_pred HcCCCcccEEEEECCCCCCHHHHHHHHHhhccc
Confidence 011112368999999999999999999876543
|
| >3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str} | Back alignment and structure |
|---|
Probab=99.01 E-value=1.1e-10 Score=86.96 Aligned_cols=120 Identities=9% Similarity=0.052 Sum_probs=67.1
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCCC-------C--CCCccceeEEEEEeCCEEEEEEecCCchhhH--------HhH
Q 030429 12 EMELSLIGLQNAGKTSLVNTIATGGYSE-------D--MIPTVGFNMRKVTKGNVTIKLWDLGGQRRFR--------TMW 74 (177)
Q Consensus 12 ~~~i~i~G~~~~GKSsli~~l~~~~~~~-------~--~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~--------~~~ 74 (177)
..+|+++|.+|+|||||+|++.+..... . ...|.... .+..+. .+.++||||..... ...
T Consensus 160 ~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~~gtT~~~~--~~~~~~-~~~liDtPG~~~~~~~~~~l~~~~l 236 (368)
T 3h2y_A 160 GKDVYVVGCTNVGKSTFINRMIKEFSDETENVITTSHFPGTTLDLI--DIPLDE-ESSLYDTPGIINHHQMAHYVGKQSL 236 (368)
T ss_dssp TSCEEEEEBTTSSHHHHHHHHHHHHTTSCSSCCEEECCC----CEE--EEESSS-SCEEEECCCBCCTTSGGGGSCHHHH
T ss_pred cceEEEecCCCCChhHHHHHHHhhhccccccceecCCCCCeecceE--EEEecC-CeEEEeCCCcCcHHHHHHHhhHHHH
Confidence 4689999999999999999998652111 1 11122221 222221 27889999953221 111
Q ss_pred HHH--hcCCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccCHHHHHHHh
Q 030429 75 ERY--CRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQL 139 (177)
Q Consensus 75 ~~~--~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~ 139 (177)
... ....+.++++++....-....+.. +......+.|+++++||+|.......+...+.+
T Consensus 237 ~~~~~~~~i~~~~~~l~~~~~~~~g~l~~-----~d~l~~~~~~~~~v~nk~d~~~~~~~~~~~~~~ 298 (368)
T 3h2y_A 237 KLITPTKEIKPMVFQLNEEQTLFFSGLAR-----FDYVSGGRRAFTCHFSNRLTIHRTKLEKADELY 298 (368)
T ss_dssp HHHSCSSCCCCEEEEECTTEEEEETTTEE-----EEEEESSSEEEEEEECTTSCEEEEEHHHHHHHH
T ss_pred HHhccccccCceEEEEcCCCEEEEcceEE-----EEEecCCCceEEEEecCccccccccHHHHHHHH
Confidence 222 356788999998732100000000 111222468999999999998765554444433
|
| >2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B | Back alignment and structure |
|---|
Probab=98.82 E-value=6.1e-10 Score=84.39 Aligned_cols=153 Identities=14% Similarity=0.136 Sum_probs=81.6
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhcC------CC---CCCCC------------------------Cccc-eeE--EEE-E
Q 030429 11 QEMELSLIGLQNAGKTSLVNTIATG------GY---SEDMI------------------------PTVG-FNM--RKV-T 53 (177)
Q Consensus 11 ~~~~i~i~G~~~~GKSsli~~l~~~------~~---~~~~~------------------------~t~~-~~~--~~~-~ 53 (177)
....|+++|++||||||+++.+... .+ ..+.. .+.. ... ..+ .
T Consensus 98 ~~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D~~r~~a~~qL~~~~~~~gv~v~~~~~~~~dp~~i~~~~l~~ 177 (432)
T 2v3c_C 98 KQNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAADTYRPAAYEQLKQLAEKIHVPIYGDETRTKSPVDIVKEGMEK 177 (432)
T ss_dssp SCCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCSCCCTTGGGSSHHHHHHSSCCEECCSSSCCSSSTTHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeccccCchHHHHHHHhhhccCcceEecCCCCCCHHHHHHHHHHH
Confidence 3468999999999999999999741 10 00000 0000 000 000 0
Q ss_pred eCCEEEEEEecCCchhhHH----hHHHH--hcCCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCC-c-EEEEeeCCC
Q 030429 54 KGNVTIKLWDLGGQRRFRT----MWERY--CRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGI-P-LLVLGNKID 125 (177)
Q Consensus 54 ~~~~~~~~~D~~g~~~~~~----~~~~~--~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~iiv~nK~D 125 (177)
..++++.++||||...... ..... +..+|.+++|+|++... + .......+ .. .. | ..+|+||+|
T Consensus 178 ~~~~D~vIIDT~G~~~~~~~l~~~l~~i~~~~~~d~vllVvda~~g~--~-~~~~~~~~-~~----~~~~i~gvVlnK~D 249 (432)
T 2v3c_C 178 FKKADVLIIDTAGRHKEEKGLLEEMKQIKEITNPDEIILVIDGTIGQ--Q-AGIQAKAF-KE----AVGEIGSIIVTKLD 249 (432)
T ss_dssp TSSCSEEEEECCCSCSSHHHHHHHHHHTTSSSCCSEEEEEEEGGGGG--G-HHHHHHHH-HT----TSCSCEEEEEECSS
T ss_pred hhCCCEEEEcCCCCccccHHHHHHHHHHHHHhcCcceeEEeeccccH--H-HHHHHHHH-hh----cccCCeEEEEeCCC
Confidence 1567889999999654321 11111 23589999999986532 1 22222222 21 24 5 788999999
Q ss_pred cccccC-HHHHHHHhCccccc----------CCceeEEEeeecCCCC-hHHHHHHHHH
Q 030429 126 KSEALS-KQALVDQLGLESIT----------DREVCCYMISCKDSIN-IDAVIDWLIK 171 (177)
Q Consensus 126 ~~~~~~-~~~~~~~~~~~~~~----------~~~~~~~~~Sa~~~~~-i~~l~~~l~~ 171 (177)
...... ........+..... ..+.+..++|+..|.| +..+++.+.+
T Consensus 250 ~~~~~g~~l~~~~~~~~pi~~ig~Ge~~~dl~~f~~~~~~s~l~g~gdi~~L~e~~~~ 307 (432)
T 2v3c_C 250 GSAKGGGALSAVAETKAPIKFIGIGEGIDDLEPFDPKKFISRLLGMGDLESLLEKAED 307 (432)
T ss_dssp SCSTTHHHHHHHHHSSCCEEEECCSSSSSSCCBCCHHHHHHHHTCSSCSSTTSSTTTS
T ss_pred CccchHHHHHHHHHHCCCEEEeecCccccccccCCHHHHHHHHcCCCcHHHHHHHHHH
Confidence 864321 22233333321100 0122334677878877 7766665543
|
| >1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=98.77 E-value=6.4e-09 Score=74.68 Aligned_cols=56 Identities=23% Similarity=0.315 Sum_probs=35.4
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcCCCCCC---CCCccceeEEEEEeCCEEEEEEecCCch
Q 030429 10 KQEMELSLIGLQNAGKTSLVNTIATGGYSED---MIPTVGFNMRKVTKGNVTIKLWDLGGQR 68 (177)
Q Consensus 10 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~---~~~t~~~~~~~~~~~~~~~~~~D~~g~~ 68 (177)
+..++|+++|.||+|||||+|++.+...... ...|..... +.. +..+.+|||||..
T Consensus 118 ~~~~~v~~vG~~nvGKSsliN~l~~~~~~~~~~~~g~T~~~~~--~~~-~~~~~l~DtpG~~ 176 (282)
T 1puj_A 118 PRAIRALIIGIPNVGKSTLINRLAKKNIAKTGDRPGITTSQQW--VKV-GKELELLDTPGIL 176 (282)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHTSCCC------------CC--EEE-TTTEEEEECCCCC
T ss_pred CCCceEEEEecCCCchHHHHHHHhcCceeecCCCCCeeeeeEE--EEe-CCCEEEEECcCcC
Confidence 4568999999999999999999996553211 111222221 222 2367899999953
|
| >3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B | Back alignment and structure |
|---|
Probab=98.73 E-value=5e-08 Score=77.11 Aligned_cols=23 Identities=26% Similarity=0.517 Sum_probs=20.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 030429 14 ELSLIGLQNAGKTSLVNTIATGG 36 (177)
Q Consensus 14 ~i~i~G~~~~GKSsli~~l~~~~ 36 (177)
.++++|++|||||||++.+.+-.
T Consensus 47 ~iaIvG~nGsGKSTLL~~I~Gl~ 69 (608)
T 3szr_A 47 AIAVIGDQSSGKSSVLEALSGVA 69 (608)
T ss_dssp CEECCCCTTSCHHHHHHHHHSCC
T ss_pred eEEEECCCCChHHHHHHHHhCCC
Confidence 39999999999999999998653
|
| >3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A* | Back alignment and structure |
|---|
Probab=98.68 E-value=6.5e-09 Score=73.89 Aligned_cols=55 Identities=18% Similarity=0.290 Sum_probs=34.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCcccee--EEEEEeCCEEEEEEecCCchh
Q 030429 13 MELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFN--MRKVTKGNVTIKLWDLGGQRR 69 (177)
Q Consensus 13 ~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~--~~~~~~~~~~~~~~D~~g~~~ 69 (177)
++++++|.+|+|||||+|++.+...... .++.+.+ ...+.. +..+.+|||||...
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~~~~-~~~~g~T~~~~~~~~-~~~~~l~DtpG~~~ 156 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRASSV-GAQPGITKGIQWFSL-ENGVKILDTPGILY 156 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC-----------CCSCEEEC-TTSCEEESSCEECC
T ss_pred hheEEeCCCCCCHHHHHHHHhccccccc-CCCCCCccceEEEEe-CCCEEEEECCCccc
Confidence 6999999999999999999996654221 1111111 111221 34688999999653
|
| >3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=98.67 E-value=1e-08 Score=77.62 Aligned_cols=112 Identities=17% Similarity=0.140 Sum_probs=63.5
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhc------CCC---CCCCC------------CccceeEEEE-----------------
Q 030429 11 QEMELSLIGLQNAGKTSLVNTIAT------GGY---SEDMI------------PTVGFNMRKV----------------- 52 (177)
Q Consensus 11 ~~~~i~i~G~~~~GKSsli~~l~~------~~~---~~~~~------------~t~~~~~~~~----------------- 52 (177)
++..|+++|++||||||++..+.. ..+ ..+.. ...+......
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv~~~~~~~dp~~i~~~al~~a 178 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVFGNPQEKDAIKLAKEGVDYF 178 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHHHGGGTCEEECCTTCCCHHHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHH
Confidence 467899999999999999999872 111 00000 0111111110
Q ss_pred EeCCEEEEEEecCCchhh----HHhHH--HHhcCCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCc
Q 030429 53 TKGNVTIKLWDLGGQRRF----RTMWE--RYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDK 126 (177)
Q Consensus 53 ~~~~~~~~~~D~~g~~~~----~~~~~--~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~ 126 (177)
...++++.++||||-... ..... .....+|.+++|+|++... +.......+... -.+..+|+||+|.
T Consensus 179 ~~~~~DvVIIDTaGrl~~d~~lm~el~~i~~~~~pd~vlLVvDA~~gq---~a~~~a~~f~~~----~~i~gVIlTKlD~ 251 (443)
T 3dm5_A 179 KSKGVDIIIVDTAGRHKEDKALIEEMKQISNVIHPHEVILVIDGTIGQ---QAYNQALAFKEA----TPIGSIIVTKLDG 251 (443)
T ss_dssp HHTTCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGGG---GHHHHHHHHHHS----CTTEEEEEECCSS
T ss_pred HhCCCCEEEEECCCcccchHHHHHHHHHHHHhhcCceEEEEEeCCCch---hHHHHHHHHHhh----CCCeEEEEECCCC
Confidence 013478999999994321 11111 1233579999999997532 222222333222 2356788999998
Q ss_pred ccc
Q 030429 127 SEA 129 (177)
Q Consensus 127 ~~~ 129 (177)
...
T Consensus 252 ~~~ 254 (443)
T 3dm5_A 252 SAK 254 (443)
T ss_dssp CSS
T ss_pred ccc
Confidence 653
|
| >1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A* | Back alignment and structure |
|---|
Probab=98.62 E-value=6.2e-08 Score=75.93 Aligned_cols=59 Identities=25% Similarity=0.257 Sum_probs=39.5
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcCCCC-CCC----CCccceeEEEE---EeCCEEEEEEecCCch
Q 030429 10 KQEMELSLIGLQNAGKTSLVNTIATGGYS-EDM----IPTVGFNMRKV---TKGNVTIKLWDLGGQR 68 (177)
Q Consensus 10 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~-~~~----~~t~~~~~~~~---~~~~~~~~~~D~~g~~ 68 (177)
....+|+|+|.||+|||||+|++++.... ... ..|.++..... ...+..+.++||||..
T Consensus 36 ~~~~~VaivG~pnvGKStLiN~L~g~~~~~~~~~tt~~~T~gi~~~~~~~~~~~~~~i~LiDTpGi~ 102 (592)
T 1f5n_A 36 QPMVVVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEGLG 102 (592)
T ss_dssp SBEEEEEEEEBTTSSHHHHHHHHTTCSSCSCCCCSSSCCCCSEEEEEEECSSSTTCEEEEEEECCBC
T ss_pred CCCcEEEEECCCCCCHHHHHHhHcCCCCccccCCCCCCceeEEEEeecccccCCCceEEEecCCCcC
Confidence 45688999999999999999999976532 111 11222222111 1356789999999954
|
| >3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A* | Back alignment and structure |
|---|
Probab=98.51 E-value=3.7e-08 Score=69.99 Aligned_cols=93 Identities=13% Similarity=0.082 Sum_probs=61.0
Q ss_pred cCCchh-hHHhHHHHhcCCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccCHHHHHHHhCcc
Q 030429 64 LGGQRR-FRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLE 142 (177)
Q Consensus 64 ~~g~~~-~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~ 142 (177)
.||+.. ........+..+|+++.|+|+.++.+..... +. + . ++|.++|+||+|+.+....+.+.+.+..
T Consensus 4 ~PGhm~ka~~~~~~~l~~~D~vl~VvDar~P~~~~~~~--l~-l-----l-~k~~iivlNK~DL~~~~~~~~~~~~~~~- 73 (262)
T 3cnl_A 4 YPGHIEKAKRQIKDLLRLVNTVVEVRDARAPFATSAYG--VD-F-----S-RKETIILLNKVDIADEKTTKKWVEFFKK- 73 (262)
T ss_dssp -----CCTTHHHHHHHTTCSEEEEEEETTSTTTTSCTT--SC-C-----T-TSEEEEEEECGGGSCHHHHHHHHHHHHH-
T ss_pred CchHHHHHHHHHHHHHhhCCEEEEEeeCCCCCcCcChH--HH-h-----c-CCCcEEEEECccCCCHHHHHHHHHHHHH-
Confidence 467653 3345667789999999999998876554311 11 1 1 7899999999999875433444443321
Q ss_pred cccCCceeEEEeeecCCCChHHHHHHHHH
Q 030429 143 SITDREVCCYMISCKDSINIDAVIDWLIK 171 (177)
Q Consensus 143 ~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~ 171 (177)
.+.++ ++||+++.|++++++.+..
T Consensus 74 ----~g~~v-~iSa~~~~gi~~L~~~l~~ 97 (262)
T 3cnl_A 74 ----QGKRV-ITTHKGEPRKVLLKKLSFD 97 (262)
T ss_dssp ----TTCCE-EECCTTSCHHHHHHHHCCC
T ss_pred ----cCCeE-EEECCCCcCHHHHHHHHHH
Confidence 12356 9999999999999887654
|
| >3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A | Back alignment and structure |
|---|
Probab=98.49 E-value=6.7e-08 Score=73.10 Aligned_cols=111 Identities=19% Similarity=0.226 Sum_probs=62.4
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhc------CCC---CCCCC------------CccceeEEE-----------------E
Q 030429 11 QEMELSLIGLQNAGKTSLVNTIAT------GGY---SEDMI------------PTVGFNMRK-----------------V 52 (177)
Q Consensus 11 ~~~~i~i~G~~~~GKSsli~~l~~------~~~---~~~~~------------~t~~~~~~~-----------------~ 52 (177)
.+..|+++|++||||||++..+.. ..+ ..+.. ...+..... .
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~r~~a~eqL~~~~~~~gv~~~~~~~~~dp~~i~~~al~~a 175 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYRPAAYDQLLQLGNQIGVQVYGEPNNQNPIEIAKKGVDIF 175 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCSCHHHHHHHHHHHHTTTCCEECCTTCSCHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCccchhHHHHHHHHHHhcCCceeeccccCCHHHHHHHHHHHH
Confidence 357889999999999999999871 110 00000 001111111 0
Q ss_pred EeCCEEEEEEecCCchh------hHHhHHH--HhcCCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCC
Q 030429 53 TKGNVTIKLWDLGGQRR------FRTMWER--YCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKI 124 (177)
Q Consensus 53 ~~~~~~~~~~D~~g~~~------~~~~~~~--~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~ 124 (177)
...++++.++||||... ....... .....+.+++|+|+.......+....+... -.+..+|+||.
T Consensus 176 ~~~~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~gq~a~~~a~~f~~~-------~~~~gVIlTKl 248 (433)
T 3kl4_A 176 VKNKMDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASIGQKAYDLASRFHQA-------SPIGSVIITKM 248 (433)
T ss_dssp TTTTCSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGGGGGGHHHHHHHHHH-------CSSEEEEEECG
T ss_pred HhcCCCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCccchHHHHHHHHHhcc-------cCCcEEEEecc
Confidence 11367888999999433 1111111 122468999999997643222322233221 24567889999
Q ss_pred Cccc
Q 030429 125 DKSE 128 (177)
Q Consensus 125 D~~~ 128 (177)
|...
T Consensus 249 D~~a 252 (433)
T 3kl4_A 249 DGTA 252 (433)
T ss_dssp GGCS
T ss_pred cccc
Confidence 9764
|
| >1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F | Back alignment and structure |
|---|
Probab=98.43 E-value=1.9e-07 Score=67.43 Aligned_cols=109 Identities=17% Similarity=0.140 Sum_probs=62.9
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhc------CCC-----CCCCCC----------ccceeEEE-----------------EE
Q 030429 12 EMELSLIGLQNAGKTSLVNTIAT------GGY-----SEDMIP----------TVGFNMRK-----------------VT 53 (177)
Q Consensus 12 ~~~i~i~G~~~~GKSsli~~l~~------~~~-----~~~~~~----------t~~~~~~~-----------------~~ 53 (177)
.-.++++|++|+||||++..+.. +.. ...... ..++.... ..
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~~r~~a~~ql~~~~~~~~v~v~~~~~~~~p~~~~~~~l~~~~ 177 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVYRPAALEQLQQLGQQIGVPVYGEPGEKDVVGIAKRGVEKFL 177 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCCSSSHHHHHHHHHHHHHTCCEECCTTCCCHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCCHHHHHHHHHHhccCCeEEEecCCCCCHHHHHHHHHHHHH
Confidence 56788999999999999999872 110 000000 00111111 01
Q ss_pred eCCEEEEEEecCCchh--hHH-hHH-----HHhcCCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCc-EEEEeeCC
Q 030429 54 KGNVTIKLWDLGGQRR--FRT-MWE-----RYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIP-LLVLGNKI 124 (177)
Q Consensus 54 ~~~~~~~~~D~~g~~~--~~~-~~~-----~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-~iiv~nK~ 124 (177)
..++++.++||||... ... ... .....+|.+++|+|+... .+.......+.. ..| ..+|+||+
T Consensus 178 ~~~~D~ViIDTpg~~~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g---~~~~~~~~~~~~-----~~~i~gvVlnk~ 249 (297)
T 1j8m_F 178 SEKMEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIG---QKAYDLASKFNQ-----ASKIGTIIITKM 249 (297)
T ss_dssp HTTCSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGG---GGHHHHHHHHHH-----TCTTEEEEEECG
T ss_pred hCCCCEEEEeCCCCcccccHHHHHHHHHHHHHHhcCCEEEEEeeCCch---HHHHHHHHHHHh-----hCCCCEEEEeCC
Confidence 1567899999999665 322 221 124468999999998642 222222222222 244 67889999
Q ss_pred Cccc
Q 030429 125 DKSE 128 (177)
Q Consensus 125 D~~~ 128 (177)
|...
T Consensus 250 D~~~ 253 (297)
T 1j8m_F 250 DGTA 253 (297)
T ss_dssp GGCT
T ss_pred CCCc
Confidence 9754
|
| >1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8 | Back alignment and structure |
|---|
Probab=98.38 E-value=1.8e-07 Score=67.79 Aligned_cols=85 Identities=18% Similarity=0.124 Sum_probs=57.7
Q ss_pred HHhcCCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccC----HHHHHHHhCcccccCCceeE
Q 030429 76 RYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALS----KQALVDQLGLESITDREVCC 151 (177)
Q Consensus 76 ~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~----~~~~~~~~~~~~~~~~~~~~ 151 (177)
..+..+|.+++|+|+.+|..-.+....+...... .++|.++|+||+|+.+... .+++.+.+... +.++
T Consensus 82 ~~~anvD~v~~V~~~~~p~~~~~~i~r~L~~~~~---~~~~~vivlnK~DL~~~~~~~~~~~~~~~~y~~~-----g~~v 153 (307)
T 1t9h_A 82 PPICNVDQAVLVFSAVQPSFSTALLDRFLVLVEA---NDIQPIICITKMDLIEDQDTEDTIQAYAEDYRNI-----GYDV 153 (307)
T ss_dssp TTEECCCEEEEEEESTTTTCCHHHHHHHHHHHHT---TTCEEEEEEECGGGCCCHHHHHHHHHHHHHHHHH-----TCCE
T ss_pred HHHHhCCEEEEEEeCCCCCCCHHHHHHHHHHHHH---CCCCEEEEEECCccCchhhhHHHHHHHHHHHHhC-----CCeE
Confidence 4578899999999998775544443333333233 3688899999999987633 23344443211 2368
Q ss_pred EEeeecCCCChHHHHHH
Q 030429 152 YMISCKDSINIDAVIDW 168 (177)
Q Consensus 152 ~~~Sa~~~~~i~~l~~~ 168 (177)
+.+||.++.|+++|++.
T Consensus 154 ~~~sa~~~~g~~~L~~~ 170 (307)
T 1t9h_A 154 YLTSSKDQDSLADIIPH 170 (307)
T ss_dssp EECCHHHHTTCTTTGGG
T ss_pred EEEecCCCCCHHHHHhh
Confidence 99999999998887654
|
| >1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A | Back alignment and structure |
|---|
Probab=98.15 E-value=3.5e-07 Score=70.20 Aligned_cols=96 Identities=15% Similarity=0.131 Sum_probs=54.4
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEE----EeCCEEEEEEecCCchh--hHHhH--------
Q 030429 9 FKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKV----TKGNVTIKLWDLGGQRR--FRTMW-------- 74 (177)
Q Consensus 9 ~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~----~~~~~~~~~~D~~g~~~--~~~~~-------- 74 (177)
...+..|+++|.+||||||+.++|...-.. ....+..+....+ ........+||..|... ....+
T Consensus 36 ~~~~~~IvlvGlpGsGKSTia~~La~~l~~-~~~~t~~~~~d~~r~~~~g~~~~~~ifd~~g~~~~r~re~~~~~~l~~~ 114 (469)
T 1bif_A 36 TNCPTLIVMVGLPARGKTYISKKLTRYLNF-IGVPTREFNVGQYRRDMVKTYKSFEFFLPDNEEGLKIRKQCALAALNDV 114 (469)
T ss_dssp --CCEEEEEECCTTSSHHHHHHHHHHHHHH-TTCCEEEEEHHHHHHHHHCSCCCGGGGCTTCHHHHHHHHHHHHHHHHHH
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHHhc-cCCCceEEecchhhhhhccCCCcccccCCCCHHHHHHHHHHHHHHHHHH
Confidence 456689999999999999999999742110 0011111110000 01113346788888733 23332
Q ss_pred HHHhcCCCEEEEEEeCCCCCCHHHHHHHHHHH
Q 030429 75 ERYCRGVSAILYVVDAADRDSVPIARSELHEL 106 (177)
Q Consensus 75 ~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~ 106 (177)
..++...++.++|+|.++. .......|....
T Consensus 115 ~~~l~~~~G~~vV~D~tn~-~~~~R~~~~~~~ 145 (469)
T 1bif_A 115 RKFLSEEGGHVAVFDATNT-TRERRAMIFNFG 145 (469)
T ss_dssp HHHHHTTCCSEEEEESCCC-SHHHHHHHHHHH
T ss_pred HHHHHhCCCCEEEEeCCCC-CHHHHHHHHHHH
Confidence 4456567888999999887 444444444433
|
| >2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V | Back alignment and structure |
|---|
Probab=98.10 E-value=1.1e-05 Score=59.56 Aligned_cols=83 Identities=13% Similarity=0.036 Sum_probs=52.3
Q ss_pred hcCCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccC---HHHHHHHhCcccccCCceeEEEe
Q 030429 78 CRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALS---KQALVDQLGLESITDREVCCYMI 154 (177)
Q Consensus 78 ~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~ 154 (177)
+..+|.+++|... +|..-.+....+...... .++|.++|+||+|+.+... .+++...+. ..+.+++.+
T Consensus 128 ~anvD~v~iv~a~-~P~~~~~~i~r~L~~a~~---~~~~~iivlNK~DL~~~~~~~~~~~~~~~y~-----~~G~~v~~~ 198 (358)
T 2rcn_A 128 AANIDQIVIVSAI-LPELSLNIIDRYLVGCET---LQVEPLIVLNKIDLLDDEGMDFVNEQMDIYR-----NIGYRVLMV 198 (358)
T ss_dssp EECCCEEEEEEES-TTTCCHHHHHHHHHHHHH---HTCEEEEEEECGGGCCHHHHHHHHHHHHHHH-----TTTCCEEEC
T ss_pred HhcCCEEEEEEeC-CCCCCHHHHHHHHHHHHh---cCCCEEEEEECccCCCchhHHHHHHHHHHHH-----hCCCcEEEE
Confidence 5778999987665 565444332222222122 2678899999999987643 122333322 223468999
Q ss_pred eecCCCChHHHHHHH
Q 030429 155 SCKDSINIDAVIDWL 169 (177)
Q Consensus 155 Sa~~~~~i~~l~~~l 169 (177)
|++++.|++++...+
T Consensus 199 Sa~~~~gl~~L~~~~ 213 (358)
T 2rcn_A 199 SSHTQDGLKPLEEAL 213 (358)
T ss_dssp BTTTTBTHHHHHHHH
T ss_pred ecCCCcCHHHHHHhc
Confidence 999999999987654
|
| >2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9 | Back alignment and structure |
|---|
Probab=98.09 E-value=3.7e-05 Score=58.36 Aligned_cols=112 Identities=21% Similarity=0.215 Sum_probs=62.2
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHh-------cCCC-----CCCCCC----------ccceeEEE----------------
Q 030429 10 KQEMELSLIGLQNAGKTSLVNTIA-------TGGY-----SEDMIP----------TVGFNMRK---------------- 51 (177)
Q Consensus 10 ~~~~~i~i~G~~~~GKSsli~~l~-------~~~~-----~~~~~~----------t~~~~~~~---------------- 51 (177)
.....|+++|.+|+||||++..|. +..+ ...... ..++....
T Consensus 98 ~~~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~~r~~a~~ql~~~~~~~~l~v~~~~~~~dp~~i~~~~l~ 177 (433)
T 2xxa_A 98 QPPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDVGQKPVDIVNAALK 177 (433)
T ss_dssp SSSEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCCSSTTHHHHHHHHHHHHTCEECCCCSSSCHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCCCCccHHHHHHhhcccCCeeEEeCCCCCCHHHHHHHHHH
Confidence 345678899999999999999887 2111 010000 00111111
Q ss_pred -EEeCCEEEEEEecCCchhhH-HhHH-----HHhcCCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCc-EEEEeeC
Q 030429 52 -VTKGNVTIKLWDLGGQRRFR-TMWE-----RYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIP-LLVLGNK 123 (177)
Q Consensus 52 -~~~~~~~~~~~D~~g~~~~~-~~~~-----~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-~iiv~nK 123 (177)
....++++.++||||..... .... ..+..++.+++|+|+......-. ....+.. ..+ .-+|+||
T Consensus 178 ~~~~~~~D~VIIDTpG~l~~~~~l~~~L~~~~~~~~p~~vllVvda~~g~~~~~---~~~~f~~-----~l~i~gvVlnK 249 (433)
T 2xxa_A 178 EAKLKFYDVLLVDTAGRLHVDEAMMDEIKQVHASINPVETLFVVDAMTGQDAAN---TAKAFNE-----ALPLTGVVLTK 249 (433)
T ss_dssp HHHHTTCSEEEEECCCCCTTCHHHHHHHHHHHHHSCCSEEEEEEETTBCTTHHH---HHHHHHH-----HSCCCCEEEEC
T ss_pred HHHhCCCCEEEEECCCcccccHHHHHHHHHHHHhhcCcceeEEeecchhHHHHH---HHHHHhc-----cCCCeEEEEec
Confidence 01246789999999954432 1111 12446899999999875432222 2222211 122 2368999
Q ss_pred CCcccc
Q 030429 124 IDKSEA 129 (177)
Q Consensus 124 ~D~~~~ 129 (177)
+|....
T Consensus 250 ~D~~~~ 255 (433)
T 2xxa_A 250 VDGDAR 255 (433)
T ss_dssp TTSSSC
T ss_pred CCCCcc
Confidence 997543
|
| >3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A* | Back alignment and structure |
|---|
Probab=97.93 E-value=2.4e-05 Score=59.51 Aligned_cols=26 Identities=23% Similarity=0.296 Sum_probs=22.5
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHhc
Q 030429 9 FKQEMELSLIGLQNAGKTSLVNTIAT 34 (177)
Q Consensus 9 ~~~~~~i~i~G~~~~GKSsli~~l~~ 34 (177)
..+..-|.|+|++++|||||+|++++
T Consensus 64 ~~~v~vVsV~G~~~~GKStLLN~llg 89 (447)
T 3q5d_A 64 DKEVVAVSVAGAFRKGKSFLMDFMLR 89 (447)
T ss_dssp TSBEEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCceEEEEEECCCCCcHHHHHHHHhh
Confidence 34567789999999999999999985
|
| >1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=97.90 E-value=6.9e-06 Score=54.87 Aligned_cols=22 Identities=36% Similarity=0.590 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHhc
Q 030429 13 MELSLIGLQNAGKTSLVNTIAT 34 (177)
Q Consensus 13 ~~i~i~G~~~~GKSsli~~l~~ 34 (177)
.+++++|++|||||||++.+.+
T Consensus 1 ~~i~l~G~nGsGKTTLl~~l~g 22 (178)
T 1ye8_A 1 MKIIITGEPGVGKTTLVKKIVE 22 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3789999999999999999974
|
| >1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A | Back alignment and structure |
|---|
Probab=97.89 E-value=4.2e-05 Score=50.82 Aligned_cols=22 Identities=23% Similarity=0.375 Sum_probs=19.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHhc
Q 030429 13 MELSLIGLQNAGKTSLVNTIAT 34 (177)
Q Consensus 13 ~~i~i~G~~~~GKSsli~~l~~ 34 (177)
.-++++|++|||||||++++..
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~ 28 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIP 28 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHH
Confidence 3588999999999999999984
|
| >4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A* | Back alignment and structure |
|---|
Probab=97.89 E-value=7.1e-06 Score=54.38 Aligned_cols=29 Identities=21% Similarity=0.298 Sum_probs=24.5
Q ss_pred ecccccceeEEEEEcCCCCCHHHHHHHHh
Q 030429 5 ISLFFKQEMELSLIGLQNAGKTSLVNTIA 33 (177)
Q Consensus 5 ~~~~~~~~~~i~i~G~~~~GKSsli~~l~ 33 (177)
.++..+..--++++|++|||||||++.+.
T Consensus 2 vsl~i~~gei~~l~G~nGsGKSTl~~~~~ 30 (171)
T 4gp7_A 2 MKLTIPELSLVVLIGSSGSGKSTFAKKHF 30 (171)
T ss_dssp EEEEEESSEEEEEECCTTSCHHHHHHHHS
T ss_pred ccccCCCCEEEEEECCCCCCHHHHHHHHc
Confidence 45667777789999999999999999754
|
| >1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=97.88 E-value=6.1e-06 Score=56.92 Aligned_cols=33 Identities=18% Similarity=0.213 Sum_probs=22.8
Q ss_pred eeecccccceeEEEEEcCCCCCHHHHHHHHhcC
Q 030429 3 LHISLFFKQEMELSLIGLQNAGKTSLVNTIATG 35 (177)
Q Consensus 3 ~~~~~~~~~~~~i~i~G~~~~GKSsli~~l~~~ 35 (177)
...++..+..-.++|+|++|||||||++.+.+.
T Consensus 14 ~~isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~ 46 (218)
T 1z6g_A 14 LVPRGSMNNIYPLVICGPSGVGKGTLIKKLLNE 46 (218)
T ss_dssp --------CCCCEEEECSTTSSHHHHHHHHHHH
T ss_pred cCCceecCCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 346677778888999999999999999999853
|
| >3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A* | Back alignment and structure |
|---|
Probab=97.85 E-value=1e-05 Score=56.48 Aligned_cols=32 Identities=25% Similarity=0.450 Sum_probs=27.7
Q ss_pred eeecccccceeEEEEEcCCCCCHHHHHHHHhc
Q 030429 3 LHISLFFKQEMELSLIGLQNAGKTSLVNTIAT 34 (177)
Q Consensus 3 ~~~~~~~~~~~~i~i~G~~~~GKSsli~~l~~ 34 (177)
...++..+..-.++++|+.|||||||++.+.+
T Consensus 22 ~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~G 53 (235)
T 3tif_A 22 KNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGC 53 (235)
T ss_dssp EEEEEEECTTCEEEEECSTTSSHHHHHHHHTT
T ss_pred EeeeEEEcCCCEEEEECCCCCcHHHHHHHHhc
Confidence 35677788888899999999999999999974
|
| >2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A | Back alignment and structure |
|---|
Probab=97.83 E-value=1.1e-05 Score=55.88 Aligned_cols=32 Identities=31% Similarity=0.402 Sum_probs=27.3
Q ss_pred eeecccccceeEEEEEcCCCCCHHHHHHHHhc
Q 030429 3 LHISLFFKQEMELSLIGLQNAGKTSLVNTIAT 34 (177)
Q Consensus 3 ~~~~~~~~~~~~i~i~G~~~~GKSsli~~l~~ 34 (177)
...++..+..-.++++|+.|||||||++.+.+
T Consensus 21 ~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~G 52 (224)
T 2pcj_A 21 KGISLSVKKGEFVSIIGASGSGKSTLLYILGL 52 (224)
T ss_dssp EEEEEEEETTCEEEEEECTTSCHHHHHHHHTT
T ss_pred eeeEEEEcCCCEEEEECCCCCCHHHHHHHHhc
Confidence 34667777777899999999999999999974
|
| >2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.80 E-value=1.4e-05 Score=55.81 Aligned_cols=32 Identities=19% Similarity=0.348 Sum_probs=27.4
Q ss_pred eeecccccceeEEEEEcCCCCCHHHHHHHHhc
Q 030429 3 LHISLFFKQEMELSLIGLQNAGKTSLVNTIAT 34 (177)
Q Consensus 3 ~~~~~~~~~~~~i~i~G~~~~GKSsli~~l~~ 34 (177)
...++..+..-.++++|+.|||||||++.+.+
T Consensus 22 ~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G 53 (237)
T 2cbz_A 22 NGITFSIPEGALVAVVGQVGCGKSSLLSALLA 53 (237)
T ss_dssp EEEEEEECTTCEEEEECSTTSSHHHHHHHHTT
T ss_pred eeeEEEECCCCEEEEECCCCCCHHHHHHHHhc
Confidence 34567777778899999999999999999974
|
| >1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=97.80 E-value=1.6e-05 Score=55.74 Aligned_cols=32 Identities=16% Similarity=0.280 Sum_probs=28.1
Q ss_pred eeecccccceeEEEEEcCCCCCHHHHHHHHhc
Q 030429 3 LHISLFFKQEMELSLIGLQNAGKTSLVNTIAT 34 (177)
Q Consensus 3 ~~~~~~~~~~~~i~i~G~~~~GKSsli~~l~~ 34 (177)
...++..+..-.++++|+.|||||||++.+.+
T Consensus 19 ~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G 50 (243)
T 1mv5_A 19 RDISFEAQPNSIIAFAGPSGGGKSTIFSLLER 50 (243)
T ss_dssp EEEEEEECTTEEEEEECCTTSSHHHHHHHHTT
T ss_pred EEeEEEEcCCCEEEEECCCCCCHHHHHHHHhc
Confidence 45677788888999999999999999999984
|
| >4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP} | Back alignment and structure |
|---|
Probab=97.79 E-value=1.4e-05 Score=54.21 Aligned_cols=28 Identities=18% Similarity=0.388 Sum_probs=21.4
Q ss_pred ccccceeEEEEEcCCCCCHHHHHHHHhc
Q 030429 7 LFFKQEMELSLIGLQNAGKTSLVNTIAT 34 (177)
Q Consensus 7 ~~~~~~~~i~i~G~~~~GKSsli~~l~~ 34 (177)
+..+....|+++|++||||||+++.+.+
T Consensus 24 m~~~~g~~i~l~G~~GsGKSTl~~~L~~ 51 (200)
T 4eun_A 24 MTGEPTRHVVVMGVSGSGKTTIAHGVAD 51 (200)
T ss_dssp ----CCCEEEEECCTTSCHHHHHHHHHH
T ss_pred hcCCCCcEEEEECCCCCCHHHHHHHHHH
Confidence 3344566899999999999999999974
|
| >3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} | Back alignment and structure |
|---|
Probab=97.78 E-value=1.5e-05 Score=56.98 Aligned_cols=32 Identities=19% Similarity=0.299 Sum_probs=27.7
Q ss_pred eeecccccceeEEEEEcCCCCCHHHHHHHHhc
Q 030429 3 LHISLFFKQEMELSLIGLQNAGKTSLVNTIAT 34 (177)
Q Consensus 3 ~~~~~~~~~~~~i~i~G~~~~GKSsli~~l~~ 34 (177)
...++..+..-.++++|+.|||||||++.+.+
T Consensus 25 ~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~G 56 (275)
T 3gfo_A 25 KGINMNIKRGEVTAILGGNGVGKSTLFQNFNG 56 (275)
T ss_dssp EEEEEEEETTSEEEEECCTTSSHHHHHHHHTT
T ss_pred EeeEEEEcCCCEEEEECCCCCCHHHHHHHHHc
Confidence 35677778888899999999999999999974
|
| >2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=97.78 E-value=1.9e-05 Score=55.31 Aligned_cols=32 Identities=25% Similarity=0.305 Sum_probs=26.8
Q ss_pred eeecccccceeEEEEEcCCCCCHHHHHHHHhcC
Q 030429 3 LHISLFFKQEMELSLIGLQNAGKTSLVNTIATG 35 (177)
Q Consensus 3 ~~~~~~~~~~~~i~i~G~~~~GKSsli~~l~~~ 35 (177)
...++..+. -.++++|+.|||||||++.+.+-
T Consensus 16 ~~isl~i~~-e~~~liG~nGsGKSTLl~~l~Gl 47 (240)
T 2onk_A 16 LNVDFEMGR-DYCVLLGPTGAGKSVFLELIAGI 47 (240)
T ss_dssp EEEEEEECS-SEEEEECCTTSSHHHHHHHHHTS
T ss_pred eeeEEEECC-EEEEEECCCCCCHHHHHHHHhCC
Confidence 345677777 78999999999999999999843
|
| >2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A* | Back alignment and structure |
|---|
Probab=97.77 E-value=1.6e-05 Score=55.97 Aligned_cols=33 Identities=27% Similarity=0.359 Sum_probs=27.8
Q ss_pred eeecccccceeEEEEEcCCCCCHHHHHHHHhcC
Q 030429 3 LHISLFFKQEMELSLIGLQNAGKTSLVNTIATG 35 (177)
Q Consensus 3 ~~~~~~~~~~~~i~i~G~~~~GKSsli~~l~~~ 35 (177)
...++..+..-.++++|+.|||||||++.+.+-
T Consensus 26 ~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 58 (247)
T 2ff7_A 26 DNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRF 58 (247)
T ss_dssp EEEEEEEETTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred eeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 345677777888999999999999999999743
|
| >1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=97.77 E-value=1.7e-05 Score=56.27 Aligned_cols=32 Identities=25% Similarity=0.351 Sum_probs=27.7
Q ss_pred eeecccccceeEEEEEcCCCCCHHHHHHHHhc
Q 030429 3 LHISLFFKQEMELSLIGLQNAGKTSLVNTIAT 34 (177)
Q Consensus 3 ~~~~~~~~~~~~i~i~G~~~~GKSsli~~l~~ 34 (177)
...++..+..-.++++|+.|||||||++.+.+
T Consensus 23 ~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~G 54 (262)
T 1b0u_A 23 KGVSLQARAGDVISIIGSSGSGKSTFLRCINF 54 (262)
T ss_dssp EEEEEEECTTCEEEEECCTTSSHHHHHHHHTT
T ss_pred EeeEEEEcCCCEEEEECCCCCCHHHHHHHHhc
Confidence 35677778888899999999999999999974
|
| >2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A* | Back alignment and structure |
|---|
Probab=97.76 E-value=1.6e-05 Score=55.76 Aligned_cols=32 Identities=13% Similarity=0.203 Sum_probs=23.5
Q ss_pred eeecccccceeEEEEEcCCCCCHHHHHHHHhc
Q 030429 3 LHISLFFKQEMELSLIGLQNAGKTSLVNTIAT 34 (177)
Q Consensus 3 ~~~~~~~~~~~~i~i~G~~~~GKSsli~~l~~ 34 (177)
...++..+....|+|+|+.|||||||++.+.+
T Consensus 16 ~~isl~i~~g~iigI~G~~GsGKSTl~k~L~~ 47 (245)
T 2jeo_A 16 ENLYFQSMRPFLIGVSGGTASGKSTVCEKIME 47 (245)
T ss_dssp -------CCSEEEEEECSTTSSHHHHHHHHHH
T ss_pred cceeccCCCCEEEEEECCCCCCHHHHHHHHHH
Confidence 35678888889999999999999999999975
|
| >1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A* | Back alignment and structure |
|---|
Probab=97.76 E-value=1.6e-05 Score=56.16 Aligned_cols=33 Identities=24% Similarity=0.289 Sum_probs=28.2
Q ss_pred eeecccccceeEEEEEcCCCCCHHHHHHHHhcC
Q 030429 3 LHISLFFKQEMELSLIGLQNAGKTSLVNTIATG 35 (177)
Q Consensus 3 ~~~~~~~~~~~~i~i~G~~~~GKSsli~~l~~~ 35 (177)
...++..+..-.++++|+.|||||||++.+.+-
T Consensus 24 ~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl 56 (257)
T 1g6h_A 24 DGVSISVNKGDVTLIIGPNGSGKSTLINVITGF 56 (257)
T ss_dssp EEECCEEETTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred eeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 356777888888999999999999999999743
|
| >2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A | Back alignment and structure |
|---|
Probab=97.76 E-value=1.7e-05 Score=55.14 Aligned_cols=32 Identities=31% Similarity=0.370 Sum_probs=27.2
Q ss_pred eecccccceeEEEEEcCCCCCHHHHHHHHhcC
Q 030429 4 HISLFFKQEMELSLIGLQNAGKTSLVNTIATG 35 (177)
Q Consensus 4 ~~~~~~~~~~~i~i~G~~~~GKSsli~~l~~~ 35 (177)
..++..+..-.++++|+.|||||||++.+.+-
T Consensus 26 ~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 57 (229)
T 2pze_A 26 DINFKIERGQLLAVAGSTGAGKTSLLMMIMGE 57 (229)
T ss_dssp EEEEEEETTCEEEEECCTTSSHHHHHHHHTTS
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 45667777778999999999999999999843
|
| >4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A* | Back alignment and structure |
|---|
Probab=97.76 E-value=0.00016 Score=48.96 Aligned_cols=70 Identities=10% Similarity=0.005 Sum_probs=46.3
Q ss_pred CCEEEEEEecCCchhhHHhHHHHhcCCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCC-CCCCcEEEEeeCCCccc
Q 030429 55 GNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPS-LSGIPLLVLGNKIDKSE 128 (177)
Q Consensus 55 ~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~~iiv~nK~D~~~ 128 (177)
..+++.++|+|+... ......+..+|.++++...+..+ ......+..+..... ..+.++.+|+|++|...
T Consensus 74 ~~yD~viiD~~~~~~--~~~~~~l~~ad~viiv~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~vv~N~~~~~~ 144 (206)
T 4dzz_A 74 ADYDFAIVDGAGSLS--VITSAAVMVSDLVIIPVTPSPLD--FSAAGSVVTVLEAQAYSRKVEARFLITRKIEMA 144 (206)
T ss_dssp TTSSEEEEECCSSSS--HHHHHHHHHCSEEEEEECSCTTT--HHHHHHHHHHHTTSCGGGCCEEEEEECSBCTTE
T ss_pred CCCCEEEEECCCCCC--HHHHHHHHHCCEEEEEecCCHHH--HHHHHHHHHHHHHHHhCCCCcEEEEEeccCCCc
Confidence 357899999998652 33345566699999999875544 555555555433211 23467789999999543
|
| >1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25 | Back alignment and structure |
|---|
Probab=97.75 E-value=1.8e-05 Score=53.05 Aligned_cols=26 Identities=23% Similarity=0.256 Sum_probs=22.3
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcC
Q 030429 10 KQEMELSLIGLQNAGKTSLVNTIATG 35 (177)
Q Consensus 10 ~~~~~i~i~G~~~~GKSsli~~l~~~ 35 (177)
++.-.++++|++|||||||++.+.+.
T Consensus 7 ~~g~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 7 LGGNILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp CTTEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHhc
Confidence 44567999999999999999999854
|
| >3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=97.75 E-value=1.8e-05 Score=53.70 Aligned_cols=30 Identities=27% Similarity=0.339 Sum_probs=21.5
Q ss_pred eecccccceeEEEEEcCCCCCHHHHHHHHh
Q 030429 4 HISLFFKQEMELSLIGLQNAGKTSLVNTIA 33 (177)
Q Consensus 4 ~~~~~~~~~~~i~i~G~~~~GKSsli~~l~ 33 (177)
..++..+..-.|+++|++||||||+.+.+.
T Consensus 17 ~~~~~~~~~~~i~l~G~~GsGKsTl~~~La 46 (199)
T 3vaa_A 17 NLYFQSNAMVRIFLTGYMGAGKTTLGKAFA 46 (199)
T ss_dssp -------CCCEEEEECCTTSCHHHHHHHHH
T ss_pred ceeEecCCCCEEEEEcCCCCCHHHHHHHHH
Confidence 455666667789999999999999999997
|
| >2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J* | Back alignment and structure |
|---|
Probab=97.75 E-value=1.8e-05 Score=56.10 Aligned_cols=32 Identities=16% Similarity=0.355 Sum_probs=27.6
Q ss_pred eeecccccceeEEEEEcCCCCCHHHHHHHHhc
Q 030429 3 LHISLFFKQEMELSLIGLQNAGKTSLVNTIAT 34 (177)
Q Consensus 3 ~~~~~~~~~~~~i~i~G~~~~GKSsli~~l~~ 34 (177)
...++..+..-.++++|+.|||||||++.+.+
T Consensus 41 ~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~G 72 (263)
T 2olj_A 41 KGINVHIREGEVVVVIGPSGSGKSTFLRCLNL 72 (263)
T ss_dssp EEEEEEECTTCEEEEECCTTSSHHHHHHHHTT
T ss_pred EeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHc
Confidence 34677777888899999999999999999974
|
| >1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=97.75 E-value=1.6e-05 Score=53.07 Aligned_cols=22 Identities=32% Similarity=0.549 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHhc
Q 030429 13 MELSLIGLQNAGKTSLVNTIAT 34 (177)
Q Consensus 13 ~~i~i~G~~~~GKSsli~~l~~ 34 (177)
--++++|++|||||||++.+.+
T Consensus 6 ~~i~i~GpsGsGKSTL~~~L~~ 27 (180)
T 1kgd_A 6 KTLVLLGAHGVGRRHIKNTLIT 27 (180)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 4689999999999999999985
|
| >4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=97.75 E-value=1.7e-05 Score=56.35 Aligned_cols=32 Identities=25% Similarity=0.418 Sum_probs=27.9
Q ss_pred eeecccccceeEEEEEcCCCCCHHHHHHHHhc
Q 030429 3 LHISLFFKQEMELSLIGLQNAGKTSLVNTIAT 34 (177)
Q Consensus 3 ~~~~~~~~~~~~i~i~G~~~~GKSsli~~l~~ 34 (177)
...++..+..-.++++|+.|||||||++.+.+
T Consensus 28 ~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G 59 (266)
T 4g1u_C 28 NDVSLHIASGEMVAIIGPNGAGKSTLLRLLTG 59 (266)
T ss_dssp EEEEEEEETTCEEEEECCTTSCHHHHHHHHTS
T ss_pred EeeEEEEcCCCEEEEECCCCCcHHHHHHHHhc
Confidence 35677788888899999999999999999984
|
| >1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=97.75 E-value=1.5e-05 Score=54.81 Aligned_cols=33 Identities=27% Similarity=0.368 Sum_probs=27.6
Q ss_pred eeecccccceeEEEEEcCCCCCHHHHHHHHhcC
Q 030429 3 LHISLFFKQEMELSLIGLQNAGKTSLVNTIATG 35 (177)
Q Consensus 3 ~~~~~~~~~~~~i~i~G~~~~GKSsli~~l~~~ 35 (177)
...++..+..-.++++|+.|||||||++.+.+-
T Consensus 26 ~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl 58 (214)
T 1sgw_A 26 ERITMTIEKGNVVNFHGPNGIGKTTLLKTISTY 58 (214)
T ss_dssp EEEEEEEETTCCEEEECCTTSSHHHHHHHHTTS
T ss_pred eeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 345677777778999999999999999999743
|
| >3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=97.74 E-value=1.8e-05 Score=53.69 Aligned_cols=25 Identities=28% Similarity=0.337 Sum_probs=21.4
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhcC
Q 030429 11 QEMELSLIGLQNAGKTSLVNTIATG 35 (177)
Q Consensus 11 ~~~~i~i~G~~~~GKSsli~~l~~~ 35 (177)
..--++++|++|||||||++.+.+.
T Consensus 6 ~g~ii~l~Gp~GsGKSTl~~~L~~~ 30 (205)
T 3tr0_A 6 KANLFIISAPSGAGKTSLVRALVKA 30 (205)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhh
Confidence 3456899999999999999999853
|
| >2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C | Back alignment and structure |
|---|
Probab=97.74 E-value=2e-05 Score=55.46 Aligned_cols=33 Identities=27% Similarity=0.258 Sum_probs=28.2
Q ss_pred eeecccccceeEEEEEcCCCCCHHHHHHHHhcC
Q 030429 3 LHISLFFKQEMELSLIGLQNAGKTSLVNTIATG 35 (177)
Q Consensus 3 ~~~~~~~~~~~~i~i~G~~~~GKSsli~~l~~~ 35 (177)
...++..+..-.++++|+.|||||||++.+.+-
T Consensus 17 ~~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl 49 (249)
T 2qi9_C 17 GPLSGEVRAGEILHLVGPNGAGKSTLLARMAGM 49 (249)
T ss_dssp EEEEEEEETTCEEEEECCTTSSHHHHHHHHTTS
T ss_pred eeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCC
Confidence 456777788888999999999999999999743
|
| >2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=97.73 E-value=2e-05 Score=56.45 Aligned_cols=32 Identities=34% Similarity=0.436 Sum_probs=27.8
Q ss_pred eeecccccceeEEEEEcCCCCCHHHHHHHHhc
Q 030429 3 LHISLFFKQEMELSLIGLQNAGKTSLVNTIAT 34 (177)
Q Consensus 3 ~~~~~~~~~~~~i~i~G~~~~GKSsli~~l~~ 34 (177)
...++..+..-.++++|+.|||||||++.+.+
T Consensus 38 ~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~G 69 (279)
T 2ihy_A 38 KKISWQIAKGDKWILYGLNGAGKTTLLNILNA 69 (279)
T ss_dssp EEEEEEEETTCEEEEECCTTSSHHHHHHHHTT
T ss_pred EeeeEEEcCCCEEEEECCCCCcHHHHHHHHhC
Confidence 35677778888899999999999999999984
|
| >1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=97.73 E-value=2e-05 Score=55.18 Aligned_cols=33 Identities=33% Similarity=0.356 Sum_probs=27.8
Q ss_pred eeecccccceeEEEEEcCCCCCHHHHHHHHhcC
Q 030429 3 LHISLFFKQEMELSLIGLQNAGKTSLVNTIATG 35 (177)
Q Consensus 3 ~~~~~~~~~~~~i~i~G~~~~GKSsli~~l~~~ 35 (177)
...++..+..-.++++|+.|||||||++.+.+-
T Consensus 23 ~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl 55 (240)
T 1ji0_A 23 KGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGL 55 (240)
T ss_dssp EEEEEEEETTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred eeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 345677777888999999999999999999843
|
| >2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} | Back alignment and structure |
|---|
Probab=97.73 E-value=2.1e-05 Score=55.74 Aligned_cols=33 Identities=18% Similarity=0.345 Sum_probs=28.1
Q ss_pred eeecccccceeEEEEEcCCCCCHHHHHHHHhcC
Q 030429 3 LHISLFFKQEMELSLIGLQNAGKTSLVNTIATG 35 (177)
Q Consensus 3 ~~~~~~~~~~~~i~i~G~~~~GKSsli~~l~~~ 35 (177)
...++..+..-.++++|+.|||||||++.+.+-
T Consensus 37 ~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 69 (260)
T 2ghi_A 37 KSINFFIPSGTTCALVGHTGSGKSTIAKLLYRF 69 (260)
T ss_dssp EEEEEEECTTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred EeeEEEECCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 345677778888999999999999999999843
|
| >2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A | Back alignment and structure |
|---|
Probab=97.72 E-value=2.3e-05 Score=55.73 Aligned_cols=33 Identities=24% Similarity=0.292 Sum_probs=28.2
Q ss_pred eeecccccceeEEEEEcCCCCCHHHHHHHHhcC
Q 030429 3 LHISLFFKQEMELSLIGLQNAGKTSLVNTIATG 35 (177)
Q Consensus 3 ~~~~~~~~~~~~i~i~G~~~~GKSsli~~l~~~ 35 (177)
...++..+..-.++++|+.|||||||++.+.+-
T Consensus 37 ~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 37 RGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp EEEEEEECTTCEEEEECCTTSSHHHHHHHHHTC
T ss_pred EeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 346777788888999999999999999999853
|
| >2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A* | Back alignment and structure |
|---|
Probab=97.72 E-value=2.2e-05 Score=55.33 Aligned_cols=33 Identities=24% Similarity=0.328 Sum_probs=28.0
Q ss_pred eeecccccceeEEEEEcCCCCCHHHHHHHHhcC
Q 030429 3 LHISLFFKQEMELSLIGLQNAGKTSLVNTIATG 35 (177)
Q Consensus 3 ~~~~~~~~~~~~i~i~G~~~~GKSsli~~l~~~ 35 (177)
...++..+..-.++++|+.|||||||++.+.+-
T Consensus 20 ~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 20 KGVNLVVPKGEVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp EEEEEEEETTCEEEEECSTTSSHHHHHHHHHTC
T ss_pred eceEEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 345677777888999999999999999999853
|
| >3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP} | Back alignment and structure |
|---|
Probab=97.72 E-value=2.1e-05 Score=53.76 Aligned_cols=26 Identities=27% Similarity=0.382 Sum_probs=22.8
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHhc
Q 030429 9 FKQEMELSLIGLQNAGKTSLVNTIAT 34 (177)
Q Consensus 9 ~~~~~~i~i~G~~~~GKSsli~~l~~ 34 (177)
.+....|+|+|++|||||||++.+.+
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~ 44 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAA 44 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 45678999999999999999999873
|
| >1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=97.72 E-value=2.3e-05 Score=55.42 Aligned_cols=33 Identities=33% Similarity=0.351 Sum_probs=27.9
Q ss_pred eeecccccceeEEEEEcCCCCCHHHHHHHHhcC
Q 030429 3 LHISLFFKQEMELSLIGLQNAGKTSLVNTIATG 35 (177)
Q Consensus 3 ~~~~~~~~~~~~i~i~G~~~~GKSsli~~l~~~ 35 (177)
...++..+..-.++++|+.|||||||++.+.+-
T Consensus 32 ~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl 64 (256)
T 1vpl_A 32 KGISFEIEEGEIFGLIGPNGAGKTTTLRIISTL 64 (256)
T ss_dssp EEEEEEECTTCEEEEECCTTSSHHHHHHHHTTS
T ss_pred EeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcC
Confidence 345677778888999999999999999999843
|
| >2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A* | Back alignment and structure |
|---|
Probab=97.72 E-value=2.4e-05 Score=55.80 Aligned_cols=33 Identities=12% Similarity=0.223 Sum_probs=28.0
Q ss_pred eeecccccceeEEEEEcCCCCCHHHHHHHHhcC
Q 030429 3 LHISLFFKQEMELSLIGLQNAGKTSLVNTIATG 35 (177)
Q Consensus 3 ~~~~~~~~~~~~i~i~G~~~~GKSsli~~l~~~ 35 (177)
...++..+..-.++|+|+.|||||||++.+.+-
T Consensus 36 ~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl 68 (271)
T 2ixe_A 36 QGLTFTLYPGKVTALVGPNGSGKSTVAALLQNL 68 (271)
T ss_dssp EEEEEEECTTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred EeeEEEECCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 345677778888999999999999999999843
|
| >1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=97.70 E-value=2.5e-05 Score=52.28 Aligned_cols=31 Identities=26% Similarity=0.328 Sum_probs=24.5
Q ss_pred ecccccceeEEEEEcCCCCCHHHHHHHHhcC
Q 030429 5 ISLFFKQEMELSLIGLQNAGKTSLVNTIATG 35 (177)
Q Consensus 5 ~~~~~~~~~~i~i~G~~~~GKSsli~~l~~~ 35 (177)
.++...+..+|+++|.+||||||+.+.|...
T Consensus 3 ~~~~~~~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 3 GSMEQPKGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp ---CCCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred cCcCCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 4556667789999999999999999999743
|
| >1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=97.70 E-value=1.8e-05 Score=53.72 Aligned_cols=23 Identities=26% Similarity=0.401 Sum_probs=20.0
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhc
Q 030429 12 EMELSLIGLQNAGKTSLVNTIAT 34 (177)
Q Consensus 12 ~~~i~i~G~~~~GKSsli~~l~~ 34 (177)
.-.++|+|++|||||||++.+.+
T Consensus 4 g~~i~lvGpsGaGKSTLl~~L~~ 26 (198)
T 1lvg_A 4 PRPVVLSGPSGAGKSTLLKKLFQ 26 (198)
T ss_dssp -CCEEEECCTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 34689999999999999999974
|
| >1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A | Back alignment and structure |
|---|
Probab=97.70 E-value=2.4e-05 Score=51.19 Aligned_cols=31 Identities=29% Similarity=0.327 Sum_probs=25.8
Q ss_pred cccccceeEEEEEcCCCCCHHHHHHHHhcCC
Q 030429 6 SLFFKQEMELSLIGLQNAGKTSLVNTIATGG 36 (177)
Q Consensus 6 ~~~~~~~~~i~i~G~~~~GKSsli~~l~~~~ 36 (177)
++..+..-.++++|+.|+|||||++.+.+..
T Consensus 27 sl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 27 KLHTEKAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp HHCCSSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred ccccCCCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 4555677789999999999999999998644
|
| >2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} | Back alignment and structure |
|---|
Probab=97.69 E-value=2.5e-05 Score=55.12 Aligned_cols=32 Identities=16% Similarity=0.335 Sum_probs=27.0
Q ss_pred eecccccceeEEEEEcCCCCCHHHHHHHHhcC
Q 030429 4 HISLFFKQEMELSLIGLQNAGKTSLVNTIATG 35 (177)
Q Consensus 4 ~~~~~~~~~~~i~i~G~~~~GKSsli~~l~~~ 35 (177)
..++..+..-.++++|+.|||||||++.+.+-
T Consensus 23 ~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl 54 (253)
T 2nq2_C 23 QLNFDLNKGDILAVLGQNGCGKSTLLDLLLGI 54 (253)
T ss_dssp EEEEEEETTCEEEEECCSSSSHHHHHHHHTTS
T ss_pred EEEEEECCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 45667777778999999999999999999843
|
| >3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum} | Back alignment and structure |
|---|
Probab=97.69 E-value=1.4e-05 Score=55.43 Aligned_cols=33 Identities=21% Similarity=0.155 Sum_probs=20.5
Q ss_pred eeecccccceeEEEEEcCCCCCHHHHHHHHh-cC
Q 030429 3 LHISLFFKQEMELSLIGLQNAGKTSLVNTIA-TG 35 (177)
Q Consensus 3 ~~~~~~~~~~~~i~i~G~~~~GKSsli~~l~-~~ 35 (177)
...++..+..--++++|++|||||||++.+. +.
T Consensus 18 ~~~sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~ 51 (231)
T 3lnc_A 18 GPGSMLKSVGVILVLSSPSGCGKTTVANKLLEKQ 51 (231)
T ss_dssp ----CCEECCCEEEEECSCC----CHHHHHHC--
T ss_pred CCCCcccCCCCEEEEECCCCCCHHHHHHHHHhcC
Confidence 3456667777789999999999999999998 53
|
| >2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=97.68 E-value=2.6e-05 Score=55.39 Aligned_cols=31 Identities=26% Similarity=0.425 Sum_probs=26.9
Q ss_pred eecccccceeEEEEEcCCCCCHHHHHHHHhc
Q 030429 4 HISLFFKQEMELSLIGLQNAGKTSLVNTIAT 34 (177)
Q Consensus 4 ~~~~~~~~~~~i~i~G~~~~GKSsli~~l~~ 34 (177)
..++..+..-.++++|+.|||||||++.+.+
T Consensus 25 ~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~G 55 (266)
T 2yz2_A 25 NVSLVINEGECLLVAGNTGSGKSTLLQIVAG 55 (266)
T ss_dssp EEEEEECTTCEEEEECSTTSSHHHHHHHHTT
T ss_pred eeEEEEcCCCEEEEECCCCCcHHHHHHHHhC
Confidence 4567777778899999999999999999974
|
| >2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A | Back alignment and structure |
|---|
Probab=97.68 E-value=2.4e-05 Score=59.15 Aligned_cols=23 Identities=35% Similarity=0.469 Sum_probs=19.8
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHh
Q 030429 11 QEMELSLIGLQNAGKTSLVNTIA 33 (177)
Q Consensus 11 ~~~~i~i~G~~~~GKSsli~~l~ 33 (177)
..-.|+++|++|+||||++..+.
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA 119 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLA 119 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHH
Confidence 44568888999999999999887
|
| >3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0 | Back alignment and structure |
|---|
Probab=97.68 E-value=3e-05 Score=52.54 Aligned_cols=30 Identities=27% Similarity=0.575 Sum_probs=23.0
Q ss_pred cccccceeEEEEEcCCCCCHHHHHHHHhcC
Q 030429 6 SLFFKQEMELSLIGLQNAGKTSLVNTIATG 35 (177)
Q Consensus 6 ~~~~~~~~~i~i~G~~~~GKSsli~~l~~~ 35 (177)
++.....--|+|+|++|||||||++.|...
T Consensus 13 ~~~~~~g~~ivl~GPSGaGKsTL~~~L~~~ 42 (197)
T 3ney_A 13 NLYFQGRKTLVLIGASGVGRSHIKNALLSQ 42 (197)
T ss_dssp ---CCSCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred cCCCCCCCEEEEECcCCCCHHHHHHHHHhh
Confidence 344555667899999999999999999843
|
| >2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=97.67 E-value=2.9e-05 Score=52.70 Aligned_cols=27 Identities=19% Similarity=0.268 Sum_probs=22.8
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcCC
Q 030429 10 KQEMELSLIGLQNAGKTSLVNTIATGG 36 (177)
Q Consensus 10 ~~~~~i~i~G~~~~GKSsli~~l~~~~ 36 (177)
+....|+++|++||||||+++.+.+..
T Consensus 4 ~~g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 4 EKGLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCCCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhh
Confidence 345679999999999999999998543
|
| >2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A* | Back alignment and structure |
|---|
Probab=97.65 E-value=1.7e-05 Score=57.38 Aligned_cols=31 Identities=26% Similarity=0.274 Sum_probs=27.0
Q ss_pred eecccccceeEEEEEcCCCCCHHHHHHHHhc
Q 030429 4 HISLFFKQEMELSLIGLQNAGKTSLVNTIAT 34 (177)
Q Consensus 4 ~~~~~~~~~~~i~i~G~~~~GKSsli~~l~~ 34 (177)
..++..+..-.++|+|++|||||||++.+.+
T Consensus 118 ~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~g 148 (305)
T 2v9p_A 118 LWLKGIPKKNCLAFIGPPNTGKSMLCNSLIH 148 (305)
T ss_dssp HHHHTCTTCSEEEEECSSSSSHHHHHHHHHH
T ss_pred cceEEecCCCEEEEECCCCCcHHHHHHHHhh
Confidence 3567778888999999999999999999974
|
| >3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A* | Back alignment and structure |
|---|
Probab=97.65 E-value=3e-05 Score=52.89 Aligned_cols=25 Identities=24% Similarity=0.434 Sum_probs=21.4
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhc
Q 030429 10 KQEMELSLIGLQNAGKTSLVNTIAT 34 (177)
Q Consensus 10 ~~~~~i~i~G~~~~GKSsli~~l~~ 34 (177)
+....|+++|+.|||||||++.+.+
T Consensus 4 ~~~~~i~i~G~~GsGKSTl~~~l~~ 28 (211)
T 3asz_A 4 PKPFVIGIAGGTASGKTTLAQALAR 28 (211)
T ss_dssp -CCEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHH
Confidence 4556899999999999999999874
|
| >2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax} | Back alignment and structure |
|---|
Probab=97.64 E-value=2.8e-05 Score=52.88 Aligned_cols=26 Identities=19% Similarity=0.353 Sum_probs=22.0
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHhc
Q 030429 9 FKQEMELSLIGLQNAGKTSLVNTIAT 34 (177)
Q Consensus 9 ~~~~~~i~i~G~~~~GKSsli~~l~~ 34 (177)
-....-|+++|++||||||+++.|..
T Consensus 9 ~~~~~~i~l~G~sGsGKsTl~~~L~~ 34 (204)
T 2qor_A 9 MARIPPLVVCGPSGVGKGTLIKKVLS 34 (204)
T ss_dssp CCCCCCEEEECCTTSCHHHHHHHHHH
T ss_pred cccCCEEEEECCCCCCHHHHHHHHHH
Confidence 34556789999999999999999974
|
| >1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A | Back alignment and structure |
|---|
Probab=97.64 E-value=2.7e-05 Score=53.12 Aligned_cols=28 Identities=18% Similarity=0.166 Sum_probs=21.7
Q ss_pred cccceeEEEEEcCCCCCHHHHHHHHhcC
Q 030429 8 FFKQEMELSLIGLQNAGKTSLVNTIATG 35 (177)
Q Consensus 8 ~~~~~~~i~i~G~~~~GKSsli~~l~~~ 35 (177)
..+..--++++|++|||||||++.+.+-
T Consensus 16 ~i~~Gei~~l~GpnGsGKSTLl~~l~gl 43 (207)
T 1znw_A 16 PAAVGRVVVLSGPSAVGKSTVVRCLRER 43 (207)
T ss_dssp ---CCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 3445567899999999999999999853
|
| >3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A* | Back alignment and structure |
|---|
Probab=97.63 E-value=2e-05 Score=57.12 Aligned_cols=32 Identities=22% Similarity=0.383 Sum_probs=28.1
Q ss_pred eeecccccceeEEEEEcCCCCCHHHHHHHHhc
Q 030429 3 LHISLFFKQEMELSLIGLQNAGKTSLVNTIAT 34 (177)
Q Consensus 3 ~~~~~~~~~~~~i~i~G~~~~GKSsli~~l~~ 34 (177)
...++..+..-.++|+|+.|||||||++.+.+
T Consensus 71 ~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g 102 (306)
T 3nh6_A 71 QDVSFTVMPGQTLALVGPSGAGKSTILRLLFR 102 (306)
T ss_dssp EEEEEEECTTCEEEEESSSCHHHHHHHHHHTT
T ss_pred eeeeEEEcCCCEEEEECCCCchHHHHHHHHHc
Confidence 45677888888999999999999999999973
|
| >2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A* | Back alignment and structure |
|---|
Probab=97.62 E-value=3.6e-05 Score=55.40 Aligned_cols=32 Identities=31% Similarity=0.357 Sum_probs=27.9
Q ss_pred eeecccccceeEEEEEcCCCCCHHHHHHHHhc
Q 030429 3 LHISLFFKQEMELSLIGLQNAGKTSLVNTIAT 34 (177)
Q Consensus 3 ~~~~~~~~~~~~i~i~G~~~~GKSsli~~l~~ 34 (177)
...++..+..-.++++|+.|||||||++.+.+
T Consensus 55 ~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~G 86 (290)
T 2bbs_A 55 KDINFKIERGQLLAVAGSTGAGKTSLLMMIMG 86 (290)
T ss_dssp EEEEEEECTTCEEEEEESTTSSHHHHHHHHTT
T ss_pred EeeEEEEcCCCEEEEECCCCCcHHHHHHHHhc
Confidence 45677778888999999999999999999974
|
| >3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A* | Back alignment and structure |
|---|
Probab=97.61 E-value=3.4e-05 Score=51.34 Aligned_cols=27 Identities=22% Similarity=0.265 Sum_probs=22.7
Q ss_pred cccceeEEEEEcCCCCCHHHHHHHHhc
Q 030429 8 FFKQEMELSLIGLQNAGKTSLVNTIAT 34 (177)
Q Consensus 8 ~~~~~~~i~i~G~~~~GKSsli~~l~~ 34 (177)
.....-.++++|++|+|||||++.+.+
T Consensus 34 ~~~~g~~~~l~G~~G~GKTtL~~~i~~ 60 (180)
T 3ec2_A 34 NPEEGKGLTFVGSPGVGKTHLAVATLK 60 (180)
T ss_dssp CGGGCCEEEECCSSSSSHHHHHHHHHH
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHHH
Confidence 344567899999999999999999874
|
| >2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=97.60 E-value=4.4e-05 Score=54.13 Aligned_cols=31 Identities=26% Similarity=0.407 Sum_probs=26.2
Q ss_pred eecccccceeEEEEEcCCCCCHHHHHHHHhcC
Q 030429 4 HISLFFKQEMELSLIGLQNAGKTSLVNTIATG 35 (177)
Q Consensus 4 ~~~~~~~~~~~i~i~G~~~~GKSsli~~l~~~ 35 (177)
..++..+ .-.++++|+.|||||||++.+.+-
T Consensus 23 ~vsl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl 53 (263)
T 2pjz_A 23 NINLEVN-GEKVIILGPNGSGKTTLLRAISGL 53 (263)
T ss_dssp EEEEEEC-SSEEEEECCTTSSHHHHHHHHTTS
T ss_pred eeeEEEC-CEEEEEECCCCCCHHHHHHHHhCC
Confidence 4566677 778999999999999999999854
|
| >3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae} | Back alignment and structure |
|---|
Probab=97.57 E-value=4.7e-05 Score=56.27 Aligned_cols=32 Identities=34% Similarity=0.414 Sum_probs=27.7
Q ss_pred eeecccccceeEEEEEcCCCCCHHHHHHHHhc
Q 030429 3 LHISLFFKQEMELSLIGLQNAGKTSLVNTIAT 34 (177)
Q Consensus 3 ~~~~~~~~~~~~i~i~G~~~~GKSsli~~l~~ 34 (177)
...++..+..--++++|+.|||||||++.+.+
T Consensus 21 ~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaG 52 (359)
T 3fvq_A 21 NDISLSLDPGEILFIIGASGCGKTTLLRCLAG 52 (359)
T ss_dssp EEEEEEECTTCEEEEEESTTSSHHHHHHHHHT
T ss_pred EeeEEEEcCCCEEEEECCCCchHHHHHHHHhc
Confidence 35677777888899999999999999999985
|
| >3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C | Back alignment and structure |
|---|
Probab=97.57 E-value=5.1e-05 Score=56.20 Aligned_cols=32 Identities=25% Similarity=0.397 Sum_probs=27.8
Q ss_pred eeecccccceeEEEEEcCCCCCHHHHHHHHhc
Q 030429 3 LHISLFFKQEMELSLIGLQNAGKTSLVNTIAT 34 (177)
Q Consensus 3 ~~~~~~~~~~~~i~i~G~~~~GKSsli~~l~~ 34 (177)
...++..+..-.++++|+.|||||||++.+.+
T Consensus 45 ~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~G 76 (366)
T 3tui_C 45 NNVSLHVPAGQIYGVIGASGAGKSTLIRCVNL 76 (366)
T ss_dssp EEEEEEECTTCEEEEECCTTSSHHHHHHHHHT
T ss_pred EeeEEEEcCCCEEEEEcCCCchHHHHHHHHhc
Confidence 35677778888899999999999999999984
|
| >1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2 | Back alignment and structure |
|---|
Probab=97.57 E-value=4.3e-05 Score=50.34 Aligned_cols=22 Identities=27% Similarity=0.459 Sum_probs=19.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHhc
Q 030429 13 MELSLIGLQNAGKTSLVNTIAT 34 (177)
Q Consensus 13 ~~i~i~G~~~~GKSsli~~l~~ 34 (177)
..|+++|++||||||+.+.+.+
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~ 26 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQ 26 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999999974
|
| >2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A | Back alignment and structure |
|---|
Probab=97.55 E-value=5.1e-05 Score=53.12 Aligned_cols=22 Identities=23% Similarity=0.430 Sum_probs=20.4
Q ss_pred eeEEEEEcCCCCCHHHHHHHHh
Q 030429 12 EMELSLIGLQNAGKTSLVNTIA 33 (177)
Q Consensus 12 ~~~i~i~G~~~~GKSsli~~l~ 33 (177)
...|+++|++|||||||++.+.
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La 48 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIA 48 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 4679999999999999999998
|
| >3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A | Back alignment and structure |
|---|
Probab=97.55 E-value=5e-05 Score=49.91 Aligned_cols=20 Identities=15% Similarity=0.438 Sum_probs=18.6
Q ss_pred eEEEEEcCCCCCHHHHHHHH
Q 030429 13 MELSLIGLQNAGKTSLVNTI 32 (177)
Q Consensus 13 ~~i~i~G~~~~GKSsli~~l 32 (177)
..|+++|++||||||+.+.|
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 46899999999999999999
|
| >3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=97.55 E-value=6.3e-05 Score=50.18 Aligned_cols=23 Identities=22% Similarity=0.335 Sum_probs=20.7
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHh
Q 030429 11 QEMELSLIGLQNAGKTSLVNTIA 33 (177)
Q Consensus 11 ~~~~i~i~G~~~~GKSsli~~l~ 33 (177)
....|+++|++||||||+.+.|.
T Consensus 3 ~g~~I~l~G~~GsGKST~~~~La 25 (186)
T 3cm0_A 3 VGQAVIFLGPPGAGKGTQASRLA 25 (186)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHH
Confidence 35679999999999999999997
|
| >3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A | Back alignment and structure |
|---|
Probab=97.54 E-value=5.7e-05 Score=56.26 Aligned_cols=32 Identities=25% Similarity=0.358 Sum_probs=27.8
Q ss_pred eeecccccceeEEEEEcCCCCCHHHHHHHHhc
Q 030429 3 LHISLFFKQEMELSLIGLQNAGKTSLVNTIAT 34 (177)
Q Consensus 3 ~~~~~~~~~~~~i~i~G~~~~GKSsli~~l~~ 34 (177)
...++..+..--++++|+.|||||||++.+.+
T Consensus 20 ~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaG 51 (381)
T 3rlf_A 20 KDINLDIHEGEFVVFVGPSGCGKSTLLRMIAG 51 (381)
T ss_dssp EEEEEEECTTCEEEEECCTTSSHHHHHHHHHT
T ss_pred eeeEEEECCCCEEEEEcCCCchHHHHHHHHHc
Confidence 35677777888899999999999999999984
|
| >1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius} | Back alignment and structure |
|---|
Probab=97.54 E-value=5.4e-05 Score=55.94 Aligned_cols=33 Identities=24% Similarity=0.355 Sum_probs=28.0
Q ss_pred eeecccccceeEEEEEcCCCCCHHHHHHHHhcC
Q 030429 3 LHISLFFKQEMELSLIGLQNAGKTSLVNTIATG 35 (177)
Q Consensus 3 ~~~~~~~~~~~~i~i~G~~~~GKSsli~~l~~~ 35 (177)
...++..+..-.++++|+.|||||||++.+.+-
T Consensus 32 ~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl 64 (355)
T 1z47_A 32 RGVSFQIREGEMVGLLGPSGSGKTTILRLIAGL 64 (355)
T ss_dssp EEEEEEEETTCEEEEECSTTSSHHHHHHHHHTS
T ss_pred eeeEEEECCCCEEEEECCCCCcHHHHHHHHhCC
Confidence 356777778888999999999999999999843
|
| >2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=97.54 E-value=5.7e-05 Score=55.91 Aligned_cols=32 Identities=25% Similarity=0.266 Sum_probs=27.6
Q ss_pred eeecccccceeEEEEEcCCCCCHHHHHHHHhc
Q 030429 3 LHISLFFKQEMELSLIGLQNAGKTSLVNTIAT 34 (177)
Q Consensus 3 ~~~~~~~~~~~~i~i~G~~~~GKSsli~~l~~ 34 (177)
...++..+..-.++++|++|||||||++.+.+
T Consensus 20 ~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaG 51 (359)
T 2yyz_A 20 DGVSFEVKDGEFVALLGPSGCGKTTTLLMLAG 51 (359)
T ss_dssp EEEEEEECTTCEEEEECSTTSSHHHHHHHHHT
T ss_pred eeeEEEEcCCCEEEEEcCCCchHHHHHHHHHC
Confidence 35677777777899999999999999999984
|
| >1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A* | Back alignment and structure |
|---|
Probab=97.54 E-value=5.1e-05 Score=52.34 Aligned_cols=26 Identities=23% Similarity=0.258 Sum_probs=21.7
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcC
Q 030429 10 KQEMELSLIGLQNAGKTSLVNTIATG 35 (177)
Q Consensus 10 ~~~~~i~i~G~~~~GKSsli~~l~~~ 35 (177)
+..--++++|++|||||||++.+.+.
T Consensus 14 ~~G~ii~l~GpsGsGKSTLlk~L~g~ 39 (219)
T 1s96_A 14 AQGTLYIVSAPSGAGKSSLIQALLKT 39 (219)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhcc
Confidence 44557899999999999999999853
|
| >1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=97.54 E-value=6e-05 Score=49.88 Aligned_cols=22 Identities=18% Similarity=0.288 Sum_probs=19.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHhc
Q 030429 13 MELSLIGLQNAGKTSLVNTIAT 34 (177)
Q Consensus 13 ~~i~i~G~~~~GKSsli~~l~~ 34 (177)
..|+++|++||||||+.+.+..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 4689999999999999999985
|
| >2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=97.54 E-value=6e-05 Score=55.87 Aligned_cols=33 Identities=33% Similarity=0.399 Sum_probs=28.0
Q ss_pred eeecccccceeEEEEEcCCCCCHHHHHHHHhcC
Q 030429 3 LHISLFFKQEMELSLIGLQNAGKTSLVNTIATG 35 (177)
Q Consensus 3 ~~~~~~~~~~~~i~i~G~~~~GKSsli~~l~~~ 35 (177)
...++..+..-.++++|+.|||||||++.+.+-
T Consensus 20 ~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl 52 (362)
T 2it1_A 20 NNINLKIKDGEFMALLGPSGSGKSTLLYTIAGI 52 (362)
T ss_dssp EEEEEEECTTCEEEEECCTTSSHHHHHHHHHTS
T ss_pred EeeEEEECCCCEEEEECCCCchHHHHHHHHhcC
Confidence 356777777888999999999999999999843
|
| >3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A* | Back alignment and structure |
|---|
Probab=97.52 E-value=5.7e-05 Score=49.61 Aligned_cols=21 Identities=14% Similarity=0.162 Sum_probs=19.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 030429 14 ELSLIGLQNAGKTSLVNTIAT 34 (177)
Q Consensus 14 ~i~i~G~~~~GKSsli~~l~~ 34 (177)
.|+++|++||||||+.+.|..
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~ 23 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSK 23 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999973
|
| >2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.52 E-value=4.3e-05 Score=54.52 Aligned_cols=27 Identities=30% Similarity=0.375 Sum_probs=22.4
Q ss_pred cccccceeEEEEEcCCCCCHHHHHHHHhc
Q 030429 6 SLFFKQEMELSLIGLQNAGKTSLVNTIAT 34 (177)
Q Consensus 6 ~~~~~~~~~i~i~G~~~~GKSsli~~l~~ 34 (177)
++..++. ++++|++|+|||||++.+.+
T Consensus 40 ~l~~~~G--vlL~Gp~GtGKTtLakala~ 66 (274)
T 2x8a_A 40 GLVTPAG--VLLAGPPGCGKTLLAKAVAN 66 (274)
T ss_dssp TCCCCSE--EEEESSTTSCHHHHHHHHHH
T ss_pred CCCCCCe--EEEECCCCCcHHHHHHHHHH
Confidence 3444555 99999999999999999984
|
| >3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus} | Back alignment and structure |
|---|
Probab=97.51 E-value=5.9e-05 Score=51.60 Aligned_cols=21 Identities=38% Similarity=0.627 Sum_probs=19.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHh
Q 030429 13 MELSLIGLQNAGKTSLVNTIA 33 (177)
Q Consensus 13 ~~i~i~G~~~~GKSsli~~l~ 33 (177)
++|+++|++||||||+.+.|.
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~ 21 (216)
T 3fb4_A 1 MNIVLMGLPGAGKGTQAEQII 21 (216)
T ss_dssp CEEEEECSTTSSHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 379999999999999999996
|
| >1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A* | Back alignment and structure |
|---|
Probab=97.51 E-value=6.6e-05 Score=55.82 Aligned_cols=33 Identities=30% Similarity=0.321 Sum_probs=28.0
Q ss_pred eeecccccceeEEEEEcCCCCCHHHHHHHHhcC
Q 030429 3 LHISLFFKQEMELSLIGLQNAGKTSLVNTIATG 35 (177)
Q Consensus 3 ~~~~~~~~~~~~i~i~G~~~~GKSsli~~l~~~ 35 (177)
...++..+..-.++++|+.|||||||++.+.+-
T Consensus 28 ~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl 60 (372)
T 1v43_A 28 NKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGL 60 (372)
T ss_dssp EEEEEEECTTCEEEEECCTTSSHHHHHHHHHTS
T ss_pred eeeEEEECCCCEEEEECCCCChHHHHHHHHHcC
Confidence 356677777888999999999999999999843
|
| >2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25 | Back alignment and structure |
|---|
Probab=97.51 E-value=5.5e-05 Score=50.67 Aligned_cols=21 Identities=19% Similarity=0.321 Sum_probs=19.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 030429 14 ELSLIGLQNAGKTSLVNTIAT 34 (177)
Q Consensus 14 ~i~i~G~~~~GKSsli~~l~~ 34 (177)
.++++|++||||||+++.+.+
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhc
Confidence 578999999999999999974
|
| >3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A* | Back alignment and structure |
|---|
Probab=97.50 E-value=6.3e-05 Score=51.52 Aligned_cols=21 Identities=43% Similarity=0.604 Sum_probs=19.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHh
Q 030429 13 MELSLIGLQNAGKTSLVNTIA 33 (177)
Q Consensus 13 ~~i~i~G~~~~GKSsli~~l~ 33 (177)
++|+++|++||||||+.+.|.
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~ 21 (216)
T 3dl0_A 1 MNLVLMGLPGAGKGTQGERIV 21 (216)
T ss_dssp CEEEEECSTTSSHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 369999999999999999996
|
| >3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=97.50 E-value=6.9e-05 Score=51.15 Aligned_cols=25 Identities=16% Similarity=0.298 Sum_probs=21.4
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhcC
Q 030429 11 QEMELSLIGLQNAGKTSLVNTIATG 35 (177)
Q Consensus 11 ~~~~i~i~G~~~~GKSsli~~l~~~ 35 (177)
..--|+++|++|||||||++.|.+.
T Consensus 7 ~g~~i~l~GpsGsGKsTl~~~L~~~ 31 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVREAVFKD 31 (208)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHS
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhh
Confidence 3456899999999999999999854
|
| >3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.49 E-value=7.1e-05 Score=56.00 Aligned_cols=32 Identities=22% Similarity=0.396 Sum_probs=28.0
Q ss_pred eeecccccceeEEEEEcCCCCCHHHHHHHHhc
Q 030429 3 LHISLFFKQEMELSLIGLQNAGKTSLVNTIAT 34 (177)
Q Consensus 3 ~~~~~~~~~~~~i~i~G~~~~GKSsli~~l~~ 34 (177)
...++..+..-.++++|+.|||||||++.+.+
T Consensus 38 ~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaG 69 (390)
T 3gd7_A 38 ENISFSISPGQRVGLLGRTGSGKSTLLSAFLR 69 (390)
T ss_dssp EEEEEEECTTCEEEEEESTTSSHHHHHHHHHT
T ss_pred eceeEEEcCCCEEEEECCCCChHHHHHHHHhC
Confidence 45677788888899999999999999999984
|
| >1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A | Back alignment and structure |
|---|
Probab=97.49 E-value=6.5e-05 Score=50.44 Aligned_cols=20 Identities=20% Similarity=0.483 Sum_probs=18.6
Q ss_pred EEEEcCCCCCHHHHHHHHhc
Q 030429 15 LSLIGLQNAGKTSLVNTIAT 34 (177)
Q Consensus 15 i~i~G~~~~GKSsli~~l~~ 34 (177)
|+|+||+|||||||+++|..
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~ 23 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFA 23 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 78999999999999999974
|
| >1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A | Back alignment and structure |
|---|
Probab=97.48 E-value=7e-05 Score=55.73 Aligned_cols=32 Identities=31% Similarity=0.322 Sum_probs=27.3
Q ss_pred eecccccceeEEEEEcCCCCCHHHHHHHHhcC
Q 030429 4 HISLFFKQEMELSLIGLQNAGKTSLVNTIATG 35 (177)
Q Consensus 4 ~~~~~~~~~~~i~i~G~~~~GKSsli~~l~~~ 35 (177)
..++..+..-.++++|+.|||||||++.+.+-
T Consensus 21 ~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl 52 (372)
T 1g29_1 21 EMSLEVKDGEFMILLGPSGCGKTTTLRMIAGL 52 (372)
T ss_dssp EEEEEEETTCEEEEECSTTSSHHHHHHHHHTS
T ss_pred eeEEEEcCCCEEEEECCCCcHHHHHHHHHHcC
Confidence 45677777778999999999999999999843
|
| >1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A* | Back alignment and structure |
|---|
Probab=97.48 E-value=7.3e-05 Score=51.50 Aligned_cols=23 Identities=26% Similarity=0.388 Sum_probs=20.5
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhc
Q 030429 12 EMELSLIGLQNAGKTSLVNTIAT 34 (177)
Q Consensus 12 ~~~i~i~G~~~~GKSsli~~l~~ 34 (177)
...|+++|++||||||+.+.+.+
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~ 27 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAE 27 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999999874
|
| >2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V | Back alignment and structure |
|---|
Probab=97.48 E-value=6.7e-05 Score=55.45 Aligned_cols=24 Identities=25% Similarity=0.243 Sum_probs=21.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCC
Q 030429 13 MELSLIGLQNAGKTSLVNTIATGG 36 (177)
Q Consensus 13 ~~i~i~G~~~~GKSsli~~l~~~~ 36 (177)
-.++++|++|||||||+|.+.+..
T Consensus 216 ~~~~lvG~sG~GKSTLln~L~g~~ 239 (358)
T 2rcn_A 216 RISIFAGQSGVGKSSLLNALLGLQ 239 (358)
T ss_dssp SEEEEECCTTSSHHHHHHHHHCCS
T ss_pred CEEEEECCCCccHHHHHHHHhccc
Confidence 468999999999999999998543
|
| >2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus} | Back alignment and structure |
|---|
Probab=97.47 E-value=8.3e-05 Score=49.80 Aligned_cols=24 Identities=29% Similarity=0.401 Sum_probs=20.9
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhc
Q 030429 11 QEMELSLIGLQNAGKTSLVNTIAT 34 (177)
Q Consensus 11 ~~~~i~i~G~~~~GKSsli~~l~~ 34 (177)
.+..|+++|.+||||||+.+.|..
T Consensus 4 ~~~~I~l~G~~GsGKST~~~~L~~ 27 (193)
T 2rhm_A 4 TPALIIVTGHPATGKTTLSQALAT 27 (193)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 446799999999999999999973
|
| >3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=97.46 E-value=8.7e-05 Score=51.96 Aligned_cols=24 Identities=17% Similarity=0.277 Sum_probs=22.0
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHh
Q 030429 10 KQEMELSLIGLQNAGKTSLVNTIA 33 (177)
Q Consensus 10 ~~~~~i~i~G~~~~GKSsli~~l~ 33 (177)
+...+|+++|++||||||+.+.|.
T Consensus 27 ~~~~~I~l~G~~GsGKsT~a~~L~ 50 (243)
T 3tlx_A 27 KPDGRYIFLGAPGSGKGTQSLNLK 50 (243)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHH
Confidence 467899999999999999999997
|
| >2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=97.46 E-value=7.8e-05 Score=50.52 Aligned_cols=21 Identities=19% Similarity=0.393 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 030429 14 ELSLIGLQNAGKTSLVNTIAT 34 (177)
Q Consensus 14 ~i~i~G~~~~GKSsli~~l~~ 34 (177)
+|+++|++||||||+.+.+.+
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 699999999999999999985
|
| >3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A* | Back alignment and structure |
|---|
Probab=97.46 E-value=7.7e-05 Score=50.54 Aligned_cols=26 Identities=19% Similarity=0.336 Sum_probs=22.4
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHhc
Q 030429 9 FKQEMELSLIGLQNAGKTSLVNTIAT 34 (177)
Q Consensus 9 ~~~~~~i~i~G~~~~GKSsli~~l~~ 34 (177)
.+....|+++|++||||||+.+.+.+
T Consensus 22 ~~~g~~i~l~G~sGsGKSTl~~~La~ 47 (200)
T 3uie_A 22 DQKGCVIWVTGLSGSGKSTLACALNQ 47 (200)
T ss_dssp TSCCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 35567899999999999999999873
|
| >1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A* | Back alignment and structure |
|---|
Probab=97.45 E-value=9e-05 Score=48.95 Aligned_cols=23 Identities=22% Similarity=0.469 Sum_probs=20.4
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhc
Q 030429 12 EMELSLIGLQNAGKTSLVNTIAT 34 (177)
Q Consensus 12 ~~~i~i~G~~~~GKSsli~~l~~ 34 (177)
...|+++|++||||||+.+.+.+
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~~ 30 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVAH 30 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHH
Confidence 45799999999999999999863
|
| >2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A | Back alignment and structure |
|---|
Probab=97.45 E-value=9.3e-05 Score=50.09 Aligned_cols=26 Identities=27% Similarity=0.336 Sum_probs=22.5
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHhc
Q 030429 9 FKQEMELSLIGLQNAGKTSLVNTIAT 34 (177)
Q Consensus 9 ~~~~~~i~i~G~~~~GKSsli~~l~~ 34 (177)
...+..|+++|.+||||||+.+.|..
T Consensus 17 ~~~~~~I~l~G~~GsGKST~a~~La~ 42 (201)
T 2cdn_A 17 RGSHMRVLLLGPPGAGKGTQAVKLAE 42 (201)
T ss_dssp CCSCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 45567899999999999999999873
|
| >1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A* | Back alignment and structure |
|---|
Probab=97.45 E-value=8.3e-05 Score=51.09 Aligned_cols=23 Identities=26% Similarity=0.471 Sum_probs=20.8
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHh
Q 030429 11 QEMELSLIGLQNAGKTSLVNTIA 33 (177)
Q Consensus 11 ~~~~i~i~G~~~~GKSsli~~l~ 33 (177)
....|+++|.+||||||+.+.|.
T Consensus 3 ~~~~I~l~G~~GsGKsT~a~~La 25 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQAPNLQ 25 (220)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHH
Confidence 45789999999999999999986
|
| >2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=97.45 E-value=6.4e-05 Score=50.64 Aligned_cols=21 Identities=29% Similarity=0.474 Sum_probs=19.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 030429 14 ELSLIGLQNAGKTSLVNTIAT 34 (177)
Q Consensus 14 ~i~i~G~~~~GKSsli~~l~~ 34 (177)
.++++|++|||||||++.+.+
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g 23 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASE 23 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHh
Confidence 589999999999999999974
|
| >3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A* | Back alignment and structure |
|---|
Probab=97.45 E-value=8.3e-05 Score=50.77 Aligned_cols=21 Identities=33% Similarity=0.490 Sum_probs=19.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHh
Q 030429 13 MELSLIGLQNAGKTSLVNTIA 33 (177)
Q Consensus 13 ~~i~i~G~~~~GKSsli~~l~ 33 (177)
++|+++|+|||||+|...++.
T Consensus 1 M~Iil~GpPGsGKgTqa~~La 21 (206)
T 3sr0_A 1 MILVFLGPPGAGKGTQAKRLA 21 (206)
T ss_dssp CEEEEECSTTSSHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 468999999999999999997
|
| >3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A* | Back alignment and structure |
|---|
Probab=97.44 E-value=8.6e-05 Score=53.98 Aligned_cols=26 Identities=12% Similarity=0.197 Sum_probs=23.3
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHhc
Q 030429 9 FKQEMELSLIGLQNAGKTSLVNTIAT 34 (177)
Q Consensus 9 ~~~~~~i~i~G~~~~GKSsli~~l~~ 34 (177)
.+...-|+|+|++|||||||++.+.+
T Consensus 87 ~~~g~ivgI~G~sGsGKSTL~~~L~g 112 (312)
T 3aez_A 87 RPVPFIIGVAGSVAVGKSTTARVLQA 112 (312)
T ss_dssp SCCCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCchHHHHHHHHHh
Confidence 56778999999999999999999874
|
| >1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A | Back alignment and structure |
|---|
Probab=97.44 E-value=8.6e-05 Score=49.60 Aligned_cols=23 Identities=13% Similarity=0.202 Sum_probs=20.2
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhc
Q 030429 12 EMELSLIGLQNAGKTSLVNTIAT 34 (177)
Q Consensus 12 ~~~i~i~G~~~~GKSsli~~l~~ 34 (177)
...|++.|++||||||+.+.|..
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~ 25 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMD 25 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999999863
|
| >3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12 | Back alignment and structure |
|---|
Probab=97.44 E-value=5.5e-05 Score=55.77 Aligned_cols=33 Identities=27% Similarity=0.267 Sum_probs=28.1
Q ss_pred eeecccccceeEEEEEcCCCCCHHHHHHHHhcC
Q 030429 3 LHISLFFKQEMELSLIGLQNAGKTSLVNTIATG 35 (177)
Q Consensus 3 ~~~~~~~~~~~~i~i~G~~~~GKSsli~~l~~~ 35 (177)
...++..+..-.++++|+.|||||||++.+.+-
T Consensus 17 ~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl 49 (348)
T 3d31_A 17 DNLSLKVESGEYFVILGPTGAGKTLFLELIAGF 49 (348)
T ss_dssp EEEEEEECTTCEEEEECCCTHHHHHHHHHHHTS
T ss_pred eeeEEEEcCCCEEEEECCCCccHHHHHHHHHcC
Confidence 356777778788999999999999999999843
|
| >2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A* | Back alignment and structure |
|---|
Probab=97.44 E-value=0.0001 Score=50.08 Aligned_cols=26 Identities=23% Similarity=0.493 Sum_probs=22.4
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcC
Q 030429 10 KQEMELSLIGLQNAGKTSLVNTIATG 35 (177)
Q Consensus 10 ~~~~~i~i~G~~~~GKSsli~~l~~~ 35 (177)
+....|+++|++||||||+++.+.+.
T Consensus 19 ~~~~~i~i~G~~GsGKSTl~~~L~~~ 44 (207)
T 2qt1_A 19 SKTFIIGISGVTNSGKTTLAKNLQKH 44 (207)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHh
Confidence 44568999999999999999999853
|
| >2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=97.43 E-value=7.4e-05 Score=52.94 Aligned_cols=26 Identities=12% Similarity=0.271 Sum_probs=22.0
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHhc
Q 030429 9 FKQEMELSLIGLQNAGKTSLVNTIAT 34 (177)
Q Consensus 9 ~~~~~~i~i~G~~~~GKSsli~~l~~ 34 (177)
.+..-.++++|++|||||||++.+.+
T Consensus 22 i~~g~~v~i~Gp~GsGKSTll~~l~g 47 (261)
T 2eyu_A 22 HRKMGLILVTGPTGSGKSTTIASMID 47 (261)
T ss_dssp GCSSEEEEEECSTTCSHHHHHHHHHH
T ss_pred hCCCCEEEEECCCCccHHHHHHHHHH
Confidence 34555799999999999999999974
|
| >1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=97.43 E-value=9.6e-05 Score=50.18 Aligned_cols=22 Identities=27% Similarity=0.385 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHhc
Q 030429 13 MELSLIGLQNAGKTSLVNTIAT 34 (177)
Q Consensus 13 ~~i~i~G~~~~GKSsli~~l~~ 34 (177)
+.|+++|++||||||+.+.+.+
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999975
|
| >3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=97.42 E-value=6.9e-05 Score=51.28 Aligned_cols=25 Identities=24% Similarity=0.173 Sum_probs=21.3
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhcC
Q 030429 11 QEMELSLIGLQNAGKTSLVNTIATG 35 (177)
Q Consensus 11 ~~~~i~i~G~~~~GKSsli~~l~~~ 35 (177)
..-.++++|+.|||||||++.+.+-
T Consensus 21 ~Ge~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 21 TNTIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp HCSEEEEECCTTSSTTHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3446899999999999999999854
|
| >3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=97.42 E-value=8.4e-05 Score=50.35 Aligned_cols=23 Identities=26% Similarity=0.468 Sum_probs=20.3
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhc
Q 030429 12 EMELSLIGLQNAGKTSLVNTIAT 34 (177)
Q Consensus 12 ~~~i~i~G~~~~GKSsli~~l~~ 34 (177)
...|+++|++||||||+.+.|..
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~ 40 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAE 40 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 34799999999999999999973
|
| >1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=97.42 E-value=0.0001 Score=49.31 Aligned_cols=22 Identities=23% Similarity=0.320 Sum_probs=19.9
Q ss_pred eeEEEEEcCCCCCHHHHHHHHh
Q 030429 12 EMELSLIGLQNAGKTSLVNTIA 33 (177)
Q Consensus 12 ~~~i~i~G~~~~GKSsli~~l~ 33 (177)
+..|+++|.+||||||+.+.|.
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~ 24 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIV 24 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHH
Confidence 4579999999999999999886
|
| >1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=97.41 E-value=0.0001 Score=49.23 Aligned_cols=21 Identities=14% Similarity=0.332 Sum_probs=19.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 030429 14 ELSLIGLQNAGKTSLVNTIAT 34 (177)
Q Consensus 14 ~i~i~G~~~~GKSsli~~l~~ 34 (177)
.|+++|.+||||||+.+.|..
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~ 23 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKE 23 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999873
|
| >2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A* | Back alignment and structure |
|---|
Probab=97.41 E-value=0.0001 Score=49.81 Aligned_cols=21 Identities=24% Similarity=0.555 Sum_probs=19.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 030429 14 ELSLIGLQNAGKTSLVNTIAT 34 (177)
Q Consensus 14 ~i~i~G~~~~GKSsli~~l~~ 34 (177)
.|+++|.+||||||+.+.|..
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~ 22 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISK 22 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHH
Confidence 689999999999999999974
|
| >1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A* | Back alignment and structure |
|---|
Probab=97.39 E-value=0.0001 Score=48.82 Aligned_cols=22 Identities=27% Similarity=0.395 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHhc
Q 030429 13 MELSLIGLQNAGKTSLVNTIAT 34 (177)
Q Consensus 13 ~~i~i~G~~~~GKSsli~~l~~ 34 (177)
..|+++|++||||||+.+.|..
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~ 25 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQS 25 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999999974
|
| >1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A* | Back alignment and structure |
|---|
Probab=97.39 E-value=0.00013 Score=49.37 Aligned_cols=26 Identities=19% Similarity=0.173 Sum_probs=22.3
Q ss_pred cccceeEEEEEcCCCCCHHHHHHHHh
Q 030429 8 FFKQEMELSLIGLQNAGKTSLVNTIA 33 (177)
Q Consensus 8 ~~~~~~~i~i~G~~~~GKSsli~~l~ 33 (177)
...+...|+++|.+||||||+.+.|.
T Consensus 11 ~~~~~~~I~l~G~~GsGKsT~~~~L~ 36 (203)
T 1ukz_A 11 SPDQVSVIFVLGGPGAGKGTQCEKLV 36 (203)
T ss_dssp CTTTCEEEEEECSTTSSHHHHHHHHH
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHH
Confidence 34556789999999999999999997
|
| >1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A* | Back alignment and structure |
|---|
Probab=97.39 E-value=0.0001 Score=50.41 Aligned_cols=22 Identities=32% Similarity=0.430 Sum_probs=19.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHhc
Q 030429 13 MELSLIGLQNAGKTSLVNTIAT 34 (177)
Q Consensus 13 ~~i~i~G~~~~GKSsli~~l~~ 34 (177)
++|+++|++||||||+.+.|..
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~ 22 (214)
T 1e4v_A 1 MRIILLGAPVAGKGTQAQFIME 22 (214)
T ss_dssp CEEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3699999999999999999863
|
| >1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A* | Back alignment and structure |
|---|
Probab=97.39 E-value=8.2e-05 Score=52.25 Aligned_cols=20 Identities=35% Similarity=0.549 Sum_probs=19.0
Q ss_pred EEEEcCCCCCHHHHHHHHhc
Q 030429 15 LSLIGLQNAGKTSLVNTIAT 34 (177)
Q Consensus 15 i~i~G~~~~GKSsli~~l~~ 34 (177)
++++|++|+|||||++.+.+
T Consensus 52 ~ll~G~~G~GKTtl~~~i~~ 71 (254)
T 1ixz_A 52 VLLVGPPGVGKTHLARAVAG 71 (254)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 99999999999999999984
|
| >2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=97.38 E-value=0.00012 Score=49.71 Aligned_cols=23 Identities=17% Similarity=0.387 Sum_probs=20.6
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhc
Q 030429 12 EMELSLIGLQNAGKTSLVNTIAT 34 (177)
Q Consensus 12 ~~~i~i~G~~~~GKSsli~~l~~ 34 (177)
...|++.|.+||||||+.+.|..
T Consensus 4 ~~~I~i~G~~GsGKsT~~~~L~~ 26 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQATLLKD 26 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHH
Confidence 46799999999999999999974
|
| >1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A* | Back alignment and structure |
|---|
Probab=97.38 E-value=0.00011 Score=50.75 Aligned_cols=23 Identities=17% Similarity=0.407 Sum_probs=20.4
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHh
Q 030429 11 QEMELSLIGLQNAGKTSLVNTIA 33 (177)
Q Consensus 11 ~~~~i~i~G~~~~GKSsli~~l~ 33 (177)
+...|+++|.+||||||+.+.|.
T Consensus 6 ~~~~I~l~G~~GsGKsT~a~~La 28 (227)
T 1zd8_A 6 RLLRAVIMGAPGSGKGTVSSRIT 28 (227)
T ss_dssp -CCEEEEEECTTSSHHHHHHHHH
T ss_pred cCcEEEEECCCCCCHHHHHHHHH
Confidence 44689999999999999999997
|
| >1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A* | Back alignment and structure |
|---|
Probab=97.38 E-value=5.3e-05 Score=56.01 Aligned_cols=32 Identities=22% Similarity=0.404 Sum_probs=27.6
Q ss_pred eecccccceeEEEEEcCCCCCHHHHHHHHhcC
Q 030429 4 HISLFFKQEMELSLIGLQNAGKTSLVNTIATG 35 (177)
Q Consensus 4 ~~~~~~~~~~~i~i~G~~~~GKSsli~~l~~~ 35 (177)
..++..+..-.++++|+.|||||||++.+.+-
T Consensus 23 ~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl 54 (353)
T 1oxx_K 23 NVNINIENGERFGILGPSGAGKTTFMRIIAGL 54 (353)
T ss_dssp EEEEEECTTCEEEEECSCHHHHHHHHHHHHTS
T ss_pred ceEEEECCCCEEEEECCCCCcHHHHHHHHhCC
Confidence 56777778788999999999999999999843
|
| >1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1 | Back alignment and structure |
|---|
Probab=97.37 E-value=9.4e-05 Score=54.91 Aligned_cols=29 Identities=24% Similarity=0.402 Sum_probs=24.5
Q ss_pred cccccc--eeEEEEEcCCCCCHHHHHHHHhc
Q 030429 6 SLFFKQ--EMELSLIGLQNAGKTSLVNTIAT 34 (177)
Q Consensus 6 ~~~~~~--~~~i~i~G~~~~GKSsli~~l~~ 34 (177)
++.... .-+++|+|++|||||||++.+.+
T Consensus 162 ~~~v~~~lg~k~~IvG~nGsGKSTLlk~L~g 192 (365)
T 1lw7_A 162 PKEARPFFAKTVAILGGESSGKSVLVNKLAA 192 (365)
T ss_dssp CTTTGGGTCEEEEEECCTTSHHHHHHHHHHH
T ss_pred CHHHHHhhhCeEEEECCCCCCHHHHHHHHHH
Confidence 444555 77999999999999999999974
|
| >2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A* | Back alignment and structure |
|---|
Probab=97.37 E-value=0.00013 Score=49.38 Aligned_cols=24 Identities=25% Similarity=0.339 Sum_probs=21.3
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcC
Q 030429 12 EMELSLIGLQNAGKTSLVNTIATG 35 (177)
Q Consensus 12 ~~~i~i~G~~~~GKSsli~~l~~~ 35 (177)
...|+++|.+||||||+.+.|...
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~~ 27 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIMES 27 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHT
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHH
Confidence 467999999999999999999843
|
| >2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A | Back alignment and structure |
|---|
Probab=97.37 E-value=0.00012 Score=49.11 Aligned_cols=23 Identities=17% Similarity=0.271 Sum_probs=20.7
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHh
Q 030429 11 QEMELSLIGLQNAGKTSLVNTIA 33 (177)
Q Consensus 11 ~~~~i~i~G~~~~GKSsli~~l~ 33 (177)
+...|+++|.+||||||+.+.|.
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~La 30 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQCEKIV 30 (196)
T ss_dssp TSCEEEEEECTTSSHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHH
Confidence 45689999999999999999986
|
| >2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis} | Back alignment and structure |
|---|
Probab=97.36 E-value=3.3e-05 Score=57.31 Aligned_cols=30 Identities=20% Similarity=0.325 Sum_probs=25.6
Q ss_pred ecccccceeEEEEEcCCCCCHHHHHHHHhc
Q 030429 5 ISLFFKQEMELSLIGLQNAGKTSLVNTIAT 34 (177)
Q Consensus 5 ~~~~~~~~~~i~i~G~~~~GKSsli~~l~~ 34 (177)
.++..+..-.++++|++|||||||++.+.+
T Consensus 168 l~~~i~~G~~i~ivG~sGsGKSTll~~l~~ 197 (361)
T 2gza_A 168 LRRAVQLERVIVVAGETGSGKTTLMKALMQ 197 (361)
T ss_dssp HHHHHHTTCCEEEEESSSSCHHHHHHHHHT
T ss_pred HHHHHhcCCEEEEECCCCCCHHHHHHHHHh
Confidence 455566777999999999999999999984
|
| >3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=97.36 E-value=0.00014 Score=52.65 Aligned_cols=30 Identities=23% Similarity=0.513 Sum_probs=24.8
Q ss_pred ecccccceeEEEEEcCCCCCHHHHHHHHhc
Q 030429 5 ISLFFKQEMELSLIGLQNAGKTSLVNTIAT 34 (177)
Q Consensus 5 ~~~~~~~~~~i~i~G~~~~GKSsli~~l~~ 34 (177)
.++..+..-.++++|++||||||+++.+.+
T Consensus 93 l~~~~~~g~vi~lvG~nGsGKTTll~~Lag 122 (302)
T 3b9q_A 93 LQLGFRKPAVIMIVGVNGGGKTTSLGKLAH 122 (302)
T ss_dssp CCCCSSSCEEEEEECCTTSCHHHHHHHHHH
T ss_pred cccccCCCcEEEEEcCCCCCHHHHHHHHHH
Confidence 344556677899999999999999999973
|
| >3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=97.35 E-value=0.00013 Score=48.58 Aligned_cols=22 Identities=45% Similarity=0.575 Sum_probs=19.9
Q ss_pred eeEEEEEcCCCCCHHHHHHHHh
Q 030429 12 EMELSLIGLQNAGKTSLVNTIA 33 (177)
Q Consensus 12 ~~~i~i~G~~~~GKSsli~~l~ 33 (177)
...|+++|++||||||+.+.+.
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La 26 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLA 26 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHH
Confidence 3479999999999999999996
|
| >2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=97.34 E-value=0.00017 Score=48.19 Aligned_cols=25 Identities=28% Similarity=0.527 Sum_probs=21.9
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHh
Q 030429 9 FKQEMELSLIGLQNAGKTSLVNTIA 33 (177)
Q Consensus 9 ~~~~~~i~i~G~~~~GKSsli~~l~ 33 (177)
..+...|+++|.+||||||+.+.+.
T Consensus 10 ~~~~~~i~l~G~~GsGKsT~~~~L~ 34 (186)
T 2yvu_A 10 IEKGIVVWLTGLPGSGKTTIATRLA 34 (186)
T ss_dssp CSCCEEEEEECCTTSSHHHHHHHHH
T ss_pred cCCCcEEEEEcCCCCCHHHHHHHHH
Confidence 3456789999999999999999986
|
| >1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A* | Back alignment and structure |
|---|
Probab=97.34 E-value=0.00014 Score=49.56 Aligned_cols=24 Identities=21% Similarity=0.358 Sum_probs=21.3
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhc
Q 030429 11 QEMELSLIGLQNAGKTSLVNTIAT 34 (177)
Q Consensus 11 ~~~~i~i~G~~~~GKSsli~~l~~ 34 (177)
+...|+++|.+||||||+.+.|..
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~L~~ 31 (215)
T 1nn5_A 8 RGALIVLEGVDRAGKSTQSRKLVE 31 (215)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999999999973
|
| >4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A* | Back alignment and structure |
|---|
Probab=97.33 E-value=0.00012 Score=50.44 Aligned_cols=25 Identities=28% Similarity=0.393 Sum_probs=21.4
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhc
Q 030429 10 KQEMELSLIGLQNAGKTSLVNTIAT 34 (177)
Q Consensus 10 ~~~~~i~i~G~~~~GKSsli~~l~~ 34 (177)
+..--++++|++|||||||++.+++
T Consensus 23 ~~G~~~~l~G~nGsGKSTll~~l~g 47 (231)
T 4a74_A 23 ETQAITEVFGEFGSGKTQLAHTLAV 47 (231)
T ss_dssp ESSEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHH
Confidence 3445689999999999999999975
|
| >1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8 | Back alignment and structure |
|---|
Probab=97.33 E-value=3.6e-05 Score=55.73 Aligned_cols=26 Identities=31% Similarity=0.428 Sum_probs=21.9
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcC
Q 030429 10 KQEMELSLIGLQNAGKTSLVNTIATG 35 (177)
Q Consensus 10 ~~~~~i~i~G~~~~GKSsli~~l~~~ 35 (177)
...-.++++|++|||||||+|.+.+.
T Consensus 171 ~~G~~~~lvG~sG~GKSTLln~L~g~ 196 (307)
T 1t9h_A 171 FQDKTTVFAGQSGVGKSSLLNAISPE 196 (307)
T ss_dssp GTTSEEEEEESHHHHHHHHHHHHCC-
T ss_pred cCCCEEEEECCCCCCHHHHHHHhccc
Confidence 34568999999999999999999853
|
| >1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8 | Back alignment and structure |
|---|
Probab=97.33 E-value=0.00014 Score=52.55 Aligned_cols=24 Identities=38% Similarity=0.582 Sum_probs=20.8
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcC
Q 030429 12 EMELSLIGLQNAGKTSLVNTIATG 35 (177)
Q Consensus 12 ~~~i~i~G~~~~GKSsli~~l~~~ 35 (177)
.-.++++|++|||||||+|.+.+.
T Consensus 169 geiv~l~G~sG~GKSTll~~l~g~ 192 (301)
T 1u0l_A 169 GKISTMAGLSGVGKSSLLNAINPG 192 (301)
T ss_dssp SSEEEEECSTTSSHHHHHHHHSTT
T ss_pred CCeEEEECCCCCcHHHHHHHhccc
Confidence 346799999999999999999854
|
| >2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=97.33 E-value=0.00012 Score=53.01 Aligned_cols=22 Identities=23% Similarity=0.383 Sum_probs=19.9
Q ss_pred eeEEEEEcCCCCCHHHHHHHHh
Q 030429 12 EMELSLIGLQNAGKTSLVNTIA 33 (177)
Q Consensus 12 ~~~i~i~G~~~~GKSsli~~l~ 33 (177)
.-.++++|++|||||||+|.+.
T Consensus 165 G~i~~l~G~sG~GKSTLln~l~ 186 (302)
T 2yv5_A 165 GFICILAGPSGVGKSSILSRLT 186 (302)
T ss_dssp TCEEEEECSTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 3467999999999999999998
|
| >2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A* | Back alignment and structure |
|---|
Probab=97.33 E-value=0.00014 Score=49.44 Aligned_cols=24 Identities=17% Similarity=0.306 Sum_probs=21.3
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhc
Q 030429 11 QEMELSLIGLQNAGKTSLVNTIAT 34 (177)
Q Consensus 11 ~~~~i~i~G~~~~GKSsli~~l~~ 34 (177)
+...|+++|.+||||||+.+.|..
T Consensus 9 ~~~~I~l~G~~GsGKST~~~~L~~ 32 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQSKLLVE 32 (212)
T ss_dssp CSCEEEEEESTTSSHHHHHHHHHH
T ss_pred cCCEEEEEcCCCCCHHHHHHHHHH
Confidence 456899999999999999999973
|
| >1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1 | Back alignment and structure |
|---|
Probab=97.32 E-value=0.00012 Score=50.39 Aligned_cols=23 Identities=17% Similarity=0.344 Sum_probs=20.5
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHh
Q 030429 11 QEMELSLIGLQNAGKTSLVNTIA 33 (177)
Q Consensus 11 ~~~~i~i~G~~~~GKSsli~~l~ 33 (177)
....|+|+|++||||||+.+.|.
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La 26 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIK 26 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHH
Confidence 34679999999999999999987
|
| >3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=97.32 E-value=0.00016 Score=52.68 Aligned_cols=24 Identities=17% Similarity=0.273 Sum_probs=21.4
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHh
Q 030429 10 KQEMELSLIGLQNAGKTSLVNTIA 33 (177)
Q Consensus 10 ~~~~~i~i~G~~~~GKSsli~~l~ 33 (177)
+..+-|+|+|++|||||||++.+.
T Consensus 90 ~~p~iigI~GpsGSGKSTl~~~L~ 113 (321)
T 3tqc_A 90 KVPYIIGIAGSVAVGKSTTSRVLK 113 (321)
T ss_dssp CCCEEEEEECCTTSSHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHH
Confidence 456789999999999999999986
|
| >1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2 | Back alignment and structure |
|---|
Probab=97.32 E-value=0.00012 Score=48.32 Aligned_cols=20 Identities=30% Similarity=0.680 Sum_probs=18.8
Q ss_pred EEEEEcCCCCCHHHHHHHHh
Q 030429 14 ELSLIGLQNAGKTSLVNTIA 33 (177)
Q Consensus 14 ~i~i~G~~~~GKSsli~~l~ 33 (177)
+|+++|++||||||+.+.+.
T Consensus 6 ~i~i~G~~GsGKsTla~~La 25 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALA 25 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHH
Confidence 68999999999999999987
|
| >1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6 | Back alignment and structure |
|---|
Probab=97.31 E-value=0.00017 Score=48.90 Aligned_cols=26 Identities=31% Similarity=0.500 Sum_probs=22.4
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHhc
Q 030429 9 FKQEMELSLIGLQNAGKTSLVNTIAT 34 (177)
Q Consensus 9 ~~~~~~i~i~G~~~~GKSsli~~l~~ 34 (177)
.+....|+++|++|||||||++.+.+
T Consensus 19 ~~~~~~i~i~G~~GsGKstl~~~l~~ 44 (201)
T 1rz3_A 19 TAGRLVLGIDGLSRSGKTTLANQLSQ 44 (201)
T ss_dssp CSSSEEEEEEECTTSSHHHHHHHHHH
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 45567899999999999999999873
|
| >2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=97.31 E-value=0.00016 Score=47.36 Aligned_cols=21 Identities=24% Similarity=0.490 Sum_probs=19.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 030429 14 ELSLIGLQNAGKTSLVNTIAT 34 (177)
Q Consensus 14 ~i~i~G~~~~GKSsli~~l~~ 34 (177)
+|+++|.+||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSR 22 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999974
|
| >1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=97.31 E-value=0.00017 Score=48.63 Aligned_cols=26 Identities=15% Similarity=0.323 Sum_probs=22.7
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcC
Q 030429 10 KQEMELSLIGLQNAGKTSLVNTIATG 35 (177)
Q Consensus 10 ~~~~~i~i~G~~~~GKSsli~~l~~~ 35 (177)
.+...|+|+|++||||||+.+.|...
T Consensus 6 ~~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 6 KHPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CCCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHC
Confidence 45678999999999999999999854
|
| >3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II} | Back alignment and structure |
|---|
Probab=97.29 E-value=0.00018 Score=49.42 Aligned_cols=23 Identities=30% Similarity=0.437 Sum_probs=20.6
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHh
Q 030429 11 QEMELSLIGLQNAGKTSLVNTIA 33 (177)
Q Consensus 11 ~~~~i~i~G~~~~GKSsli~~l~ 33 (177)
+..+|+++|.+||||||+.+.|.
T Consensus 4 ~~~~I~l~G~~GsGKsT~a~~La 26 (217)
T 3be4_A 4 KKHNLILIGAPGSGKGTQCEFIK 26 (217)
T ss_dssp GCCEEEEEECTTSSHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHH
Confidence 34689999999999999999986
|
| >1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=97.29 E-value=0.00012 Score=52.12 Aligned_cols=21 Identities=33% Similarity=0.510 Sum_probs=19.4
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q 030429 15 LSLIGLQNAGKTSLVNTIATG 35 (177)
Q Consensus 15 i~i~G~~~~GKSsli~~l~~~ 35 (177)
++++|++|+|||||++.+.+.
T Consensus 76 vll~Gp~GtGKTtl~~~i~~~ 96 (278)
T 1iy2_A 76 VLLVGPPGVGKTHLARAVAGE 96 (278)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCcChHHHHHHHHHHH
Confidence 999999999999999999843
|
| >2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.29 E-value=0.00014 Score=48.94 Aligned_cols=24 Identities=17% Similarity=0.239 Sum_probs=21.0
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhc
Q 030429 11 QEMELSLIGLQNAGKTSLVNTIAT 34 (177)
Q Consensus 11 ~~~~i~i~G~~~~GKSsli~~l~~ 34 (177)
....|+++|.+||||||+.+.|..
T Consensus 11 ~~~~I~l~G~~GsGKsT~a~~L~~ 34 (199)
T 2bwj_A 11 KCKIIFIIGGPGSGKGTQCEKLVE 34 (199)
T ss_dssp HSCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 346799999999999999999973
|
| >1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A* | Back alignment and structure |
|---|
Probab=97.28 E-value=0.0002 Score=47.78 Aligned_cols=23 Identities=17% Similarity=0.222 Sum_probs=20.3
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhc
Q 030429 12 EMELSLIGLQNAGKTSLVNTIAT 34 (177)
Q Consensus 12 ~~~i~i~G~~~~GKSsli~~l~~ 34 (177)
...|+++|.+||||||+.+.|..
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~ 28 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVR 28 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999999863
|
| >1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B* | Back alignment and structure |
|---|
Probab=97.28 E-value=0.00018 Score=51.68 Aligned_cols=26 Identities=31% Similarity=0.331 Sum_probs=22.3
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHhc
Q 030429 9 FKQEMELSLIGLQNAGKTSLVNTIAT 34 (177)
Q Consensus 9 ~~~~~~i~i~G~~~~GKSsli~~l~~ 34 (177)
...+.-|++.|++||||||+.+.+..
T Consensus 30 ~~~~~livl~G~sGsGKSTla~~L~~ 55 (287)
T 1gvn_B 30 VESPTAFLLGGQPGSGKTSLRSAIFE 55 (287)
T ss_dssp CSSCEEEEEECCTTSCTHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 34567899999999999999999973
|
| >4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis} | Back alignment and structure |
|---|
Probab=97.28 E-value=0.00017 Score=50.72 Aligned_cols=23 Identities=26% Similarity=0.352 Sum_probs=20.9
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHh
Q 030429 11 QEMELSLIGLQNAGKTSLVNTIA 33 (177)
Q Consensus 11 ~~~~i~i~G~~~~GKSsli~~l~ 33 (177)
....|+|+|++||||||+++.+.
T Consensus 26 ~g~~I~I~G~~GsGKSTl~k~La 48 (252)
T 4e22_A 26 IAPVITVDGPSGAGKGTLCKALA 48 (252)
T ss_dssp TSCEEEEECCTTSSHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHH
Confidence 44689999999999999999997
|
| >2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A* | Back alignment and structure |
|---|
Probab=97.28 E-value=0.00017 Score=49.71 Aligned_cols=20 Identities=20% Similarity=0.375 Sum_probs=18.8
Q ss_pred EEEEEcCCCCCHHHHHHHHh
Q 030429 14 ELSLIGLQNAGKTSLVNTIA 33 (177)
Q Consensus 14 ~i~i~G~~~~GKSsli~~l~ 33 (177)
.|+++|++||||||+.+.|.
T Consensus 2 ~I~l~G~~GsGKsT~a~~La 21 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVK 21 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 68999999999999999986
|
| >3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A | Back alignment and structure |
|---|
Probab=97.28 E-value=0.00017 Score=47.90 Aligned_cols=23 Identities=30% Similarity=0.352 Sum_probs=20.5
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHh
Q 030429 11 QEMELSLIGLQNAGKTSLVNTIA 33 (177)
Q Consensus 11 ~~~~i~i~G~~~~GKSsli~~l~ 33 (177)
....|+++|.+||||||+.+.+.
T Consensus 10 ~~~~i~i~G~~GsGKst~~~~l~ 32 (180)
T 3iij_A 10 LLPNILLTGTPGVGKTTLGKELA 32 (180)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHH
T ss_pred cCCeEEEEeCCCCCHHHHHHHHH
Confidence 44579999999999999999997
|
| >1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A* | Back alignment and structure |
|---|
Probab=97.28 E-value=0.00018 Score=52.22 Aligned_cols=25 Identities=16% Similarity=0.299 Sum_probs=22.3
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhc
Q 030429 10 KQEMELSLIGLQNAGKTSLVNTIAT 34 (177)
Q Consensus 10 ~~~~~i~i~G~~~~GKSsli~~l~~ 34 (177)
.....|+|+|++|||||||++.+.+
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~ 102 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQA 102 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 5567899999999999999999974
|
| >3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A | Back alignment and structure |
|---|
Probab=97.27 E-value=0.00017 Score=56.90 Aligned_cols=32 Identities=22% Similarity=0.400 Sum_probs=28.0
Q ss_pred eeecccccceeEEEEEcCCCCCHHHHHHHHhc
Q 030429 3 LHISLFFKQEMELSLIGLQNAGKTSLVNTIAT 34 (177)
Q Consensus 3 ~~~~~~~~~~~~i~i~G~~~~GKSsli~~l~~ 34 (177)
...++..+..-.++++|+.|||||||++.+.+
T Consensus 360 ~~v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g 391 (582)
T 3b60_A 360 RNINLKIPAGKTVALVGRSGSGKSTIASLITR 391 (582)
T ss_dssp EEEEEEECTTCEEEEEECTTSSHHHHHHHHTT
T ss_pred cceeEEEcCCCEEEEECCCCCCHHHHHHHHhh
Confidence 45677788888999999999999999999974
|
| >2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A* | Back alignment and structure |
|---|
Probab=97.26 E-value=0.00021 Score=47.40 Aligned_cols=25 Identities=28% Similarity=0.394 Sum_probs=21.2
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhc
Q 030429 10 KQEMELSLIGLQNAGKTSLVNTIAT 34 (177)
Q Consensus 10 ~~~~~i~i~G~~~~GKSsli~~l~~ 34 (177)
.+...|+++|.+||||||+.+.|..
T Consensus 3 ~~g~~i~l~G~~GsGKST~~~~L~~ 27 (179)
T 2pez_A 3 MRGCTVWLTGLSGAGKTTVSMALEE 27 (179)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHH
Confidence 3456799999999999999999974
|
| >3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A* | Back alignment and structure |
|---|
Probab=97.26 E-value=0.00014 Score=53.83 Aligned_cols=22 Identities=14% Similarity=0.234 Sum_probs=19.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHhc
Q 030429 13 MELSLIGLQNAGKTSLVNTIAT 34 (177)
Q Consensus 13 ~~i~i~G~~~~GKSsli~~l~~ 34 (177)
=.++++|++|||||||++.+.+
T Consensus 124 g~i~I~GptGSGKTTlL~~l~g 145 (356)
T 3jvv_A 124 GLVLVTGPTGSGKSTTLAAMLD 145 (356)
T ss_dssp EEEEEECSTTSCHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 3799999999999999999973
|
| >2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1 | Back alignment and structure |
|---|
Probab=97.26 E-value=5.1e-05 Score=58.80 Aligned_cols=28 Identities=25% Similarity=0.430 Sum_probs=23.6
Q ss_pred ccccceeEEEEEcCCCCCHHHHHHHHhc
Q 030429 7 LFFKQEMELSLIGLQNAGKTSLVNTIAT 34 (177)
Q Consensus 7 ~~~~~~~~i~i~G~~~~GKSsli~~l~~ 34 (177)
+..+..-.++++|++|||||||++.+.+
T Consensus 255 ~~v~~g~~i~I~GptGSGKTTlL~aL~~ 282 (511)
T 2oap_1 255 LAIEHKFSAIVVGETASGKTTTLNAIMM 282 (511)
T ss_dssp HHHHTTCCEEEEESTTSSHHHHHHHHGG
T ss_pred HHHhCCCEEEEECCCCCCHHHHHHHHHh
Confidence 4445566799999999999999999984
|
| >2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=97.26 E-value=0.00012 Score=48.54 Aligned_cols=24 Identities=21% Similarity=0.207 Sum_probs=16.5
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhc
Q 030429 11 QEMELSLIGLQNAGKTSLVNTIAT 34 (177)
Q Consensus 11 ~~~~i~i~G~~~~GKSsli~~l~~ 34 (177)
+...|+++|.+||||||+.+.|..
T Consensus 4 ~~~~I~l~G~~GsGKST~a~~La~ 27 (183)
T 2vli_A 4 RSPIIWINGPFGVGKTHTAHTLHE 27 (183)
T ss_dssp -CCEEEEECCC----CHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 346799999999999999999963
|
| >2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A | Back alignment and structure |
|---|
Probab=97.25 E-value=0.00019 Score=55.15 Aligned_cols=31 Identities=19% Similarity=0.375 Sum_probs=26.0
Q ss_pred eecccccceeEEEEEcCCCCCHHHHHHHHhc
Q 030429 4 HISLFFKQEMELSLIGLQNAGKTSLVNTIAT 34 (177)
Q Consensus 4 ~~~~~~~~~~~i~i~G~~~~GKSsli~~l~~ 34 (177)
..++..+..-.++|+|++|||||||++.+.+
T Consensus 285 ~Isl~i~~GeVI~LVGpNGSGKTTLl~~LAg 315 (503)
T 2yhs_A 285 PLNVEGKAPFVILMVGVNGVGKTTTIGKLAR 315 (503)
T ss_dssp CCCCCSCTTEEEEEECCTTSSHHHHHHHHHH
T ss_pred CceeeccCCeEEEEECCCcccHHHHHHHHHH
Confidence 3456667778899999999999999999973
|
| >2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B} | Back alignment and structure |
|---|
Probab=97.25 E-value=0.00012 Score=47.33 Aligned_cols=23 Identities=22% Similarity=0.300 Sum_probs=20.3
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhc
Q 030429 12 EMELSLIGLQNAGKTSLVNTIAT 34 (177)
Q Consensus 12 ~~~i~i~G~~~~GKSsli~~l~~ 34 (177)
.-.++++|++|+|||||++.+.+
T Consensus 36 g~~~~l~G~~G~GKTtL~~~i~~ 58 (149)
T 2kjq_A 36 GQFIYVWGEEGAGKSHLLQAWVA 58 (149)
T ss_dssp CSEEEEESSSTTTTCHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 34689999999999999999984
|
| >1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6 | Back alignment and structure |
|---|
Probab=97.24 E-value=0.00022 Score=51.23 Aligned_cols=25 Identities=24% Similarity=0.135 Sum_probs=22.1
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHh
Q 030429 9 FKQEMELSLIGLQNAGKTSLVNTIA 33 (177)
Q Consensus 9 ~~~~~~i~i~G~~~~GKSsli~~l~ 33 (177)
.+....|+|.|++|||||||++.+.
T Consensus 28 ~~~~~ii~I~G~sGsGKSTla~~L~ 52 (290)
T 1odf_A 28 NKCPLFIFFSGPQGSGKSFTSIQIY 52 (290)
T ss_dssp CCSCEEEEEECCTTSSHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHH
Confidence 4567889999999999999999886
|
| >2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A | Back alignment and structure |
|---|
Probab=97.24 E-value=8e-05 Score=54.57 Aligned_cols=30 Identities=17% Similarity=0.112 Sum_probs=24.6
Q ss_pred cccccceeEEEEEcCCCCCHHHHHHHHhcC
Q 030429 6 SLFFKQEMELSLIGLQNAGKTSLVNTIATG 35 (177)
Q Consensus 6 ~~~~~~~~~i~i~G~~~~GKSsli~~l~~~ 35 (177)
++..+..-.++++|++|||||||++.+.+-
T Consensus 165 ~~~i~~g~~v~i~G~~GsGKTTll~~l~g~ 194 (330)
T 2pt7_A 165 KDGIAIGKNVIVCGGTGSGKTTYIKSIMEF 194 (330)
T ss_dssp HHHHHHTCCEEEEESTTSCHHHHHHHGGGG
T ss_pred hhhccCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 344555668999999999999999999843
|
| >1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A | Back alignment and structure |
|---|
Probab=97.23 E-value=0.00024 Score=48.71 Aligned_cols=23 Identities=26% Similarity=0.408 Sum_probs=20.9
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhc
Q 030429 12 EMELSLIGLQNAGKTSLVNTIAT 34 (177)
Q Consensus 12 ~~~i~i~G~~~~GKSsli~~l~~ 34 (177)
++.|+|+|.+||||||+.+.|..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999974
|
| >1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A* | Back alignment and structure |
|---|
Probab=97.23 E-value=0.00022 Score=50.12 Aligned_cols=27 Identities=19% Similarity=0.199 Sum_probs=21.7
Q ss_pred cccceeEEEEEcCCCCCHHHHHHHHhc
Q 030429 8 FFKQEMELSLIGLQNAGKTSLVNTIAT 34 (177)
Q Consensus 8 ~~~~~~~i~i~G~~~~GKSsli~~l~~ 34 (177)
...+.+.|+|.|.+||||||+.+.|..
T Consensus 18 ~~~~~~iI~I~G~~GSGKST~a~~L~~ 44 (252)
T 1uj2_A 18 NGGEPFLIGVSGGTASGKSSVCAKIVQ 44 (252)
T ss_dssp ---CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred cCCCcEEEEEECCCCCCHHHHHHHHHH
Confidence 344567899999999999999999864
|
| >2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=97.23 E-value=0.00022 Score=52.76 Aligned_cols=30 Identities=23% Similarity=0.513 Sum_probs=24.9
Q ss_pred ecccccceeEEEEEcCCCCCHHHHHHHHhc
Q 030429 5 ISLFFKQEMELSLIGLQNAGKTSLVNTIAT 34 (177)
Q Consensus 5 ~~~~~~~~~~i~i~G~~~~GKSsli~~l~~ 34 (177)
.++..+..-.++++|++||||||++..+.+
T Consensus 150 l~l~~~~g~vi~lvG~nGsGKTTll~~Lag 179 (359)
T 2og2_A 150 LQLGFRKPAVIMIVGVNGGGKTTSLGKLAH 179 (359)
T ss_dssp CCCCSSSSEEEEEECCTTSCHHHHHHHHHH
T ss_pred cceecCCCeEEEEEcCCCChHHHHHHHHHh
Confidence 345556677899999999999999999973
|
| >2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=97.23 E-value=0.00021 Score=47.79 Aligned_cols=21 Identities=19% Similarity=0.412 Sum_probs=19.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 030429 14 ELSLIGLQNAGKTSLVNTIAT 34 (177)
Q Consensus 14 ~i~i~G~~~~GKSsli~~l~~ 34 (177)
.|+++|.+||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYE 22 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999974
|
| >2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae} | Back alignment and structure |
|---|
Probab=97.22 E-value=0.00015 Score=51.07 Aligned_cols=26 Identities=31% Similarity=0.327 Sum_probs=22.4
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHhc
Q 030429 9 FKQEMELSLIGLQNAGKTSLVNTIAT 34 (177)
Q Consensus 9 ~~~~~~i~i~G~~~~GKSsli~~l~~ 34 (177)
.+.+..|+++|++||||||+.+.+..
T Consensus 29 ~~~~~~i~l~G~~GsGKSTla~~L~~ 54 (253)
T 2p5t_B 29 SKQPIAILLGGQSGAGKTTIHRIKQK 54 (253)
T ss_dssp CSSCEEEEEESCGGGTTHHHHHHHHH
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHH
Confidence 45567899999999999999999863
|
| >1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A* | Back alignment and structure |
|---|
Probab=97.22 E-value=0.00023 Score=49.39 Aligned_cols=24 Identities=25% Similarity=0.372 Sum_probs=21.2
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHh
Q 030429 10 KQEMELSLIGLQNAGKTSLVNTIA 33 (177)
Q Consensus 10 ~~~~~i~i~G~~~~GKSsli~~l~ 33 (177)
....+|+++|.+||||||+.+.|.
T Consensus 14 ~~~~~I~l~G~~GsGKsT~a~~La 37 (233)
T 1ak2_A 14 PKGVRAVLLGPPGAGKGTQAPKLA 37 (233)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHH
Confidence 344689999999999999999987
|
| >3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae} | Back alignment and structure |
|---|
Probab=97.21 E-value=0.0002 Score=56.50 Aligned_cols=32 Identities=25% Similarity=0.469 Sum_probs=27.8
Q ss_pred eeecccccceeEEEEEcCCCCCHHHHHHHHhc
Q 030429 3 LHISLFFKQEMELSLIGLQNAGKTSLVNTIAT 34 (177)
Q Consensus 3 ~~~~~~~~~~~~i~i~G~~~~GKSsli~~l~~ 34 (177)
...++..+..-.++++|+.|||||||++.+.+
T Consensus 360 ~~i~l~i~~G~~~~ivG~sGsGKSTll~~l~g 391 (582)
T 3b5x_A 360 SHVSFSIPQGKTVALVGRSGSGKSTIANLFTR 391 (582)
T ss_pred ccceEEECCCCEEEEECCCCCCHHHHHHHHhc
Confidence 34677778888999999999999999999984
|
| >3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP} | Back alignment and structure |
|---|
Probab=97.21 E-value=0.0022 Score=43.71 Aligned_cols=68 Identities=9% Similarity=-0.043 Sum_probs=44.4
Q ss_pred CCEEEEEEecCCc-hhhHHhHHHHhcCCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccc
Q 030429 55 GNVTIKLWDLGGQ-RRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSE 128 (177)
Q Consensus 55 ~~~~~~~~D~~g~-~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~ 128 (177)
..+++.++|+|+. ... .....+..+|.++++...+. .+.......+..+.... +.++.+|+|+.|...
T Consensus 66 ~~yD~viiD~p~~~~~~--~~~~~l~~aD~viiv~~~~~-~~~~~~~~~~~~l~~~~---~~~~~vv~N~~~~~~ 134 (209)
T 3cwq_A 66 PKYQNIVIDTQARPEDE--DLEALADGCDLLVIPSTPDA-LALDALMLTIETLQKLG---NNRFRILLTIIPPYP 134 (209)
T ss_dssp GGCSEEEEEEECCCSSS--HHHHHHHTSSEEEEEECSSH-HHHHHHHHHHHHHHHTC---SSSEEEEECSBCCTT
T ss_pred hcCCEEEEeCCCCcCcH--HHHHHHHHCCEEEEEecCCc-hhHHHHHHHHHHHHhcc---CCCEEEEEEecCCcc
Confidence 3578899999986 433 23445677999999998632 33444444444443321 456889999998754
|
| >2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A* | Back alignment and structure |
|---|
Probab=97.20 E-value=0.00021 Score=49.52 Aligned_cols=28 Identities=21% Similarity=0.167 Sum_probs=23.9
Q ss_pred cccceeEEEEEcCCCCCHHHHHHHHhcC
Q 030429 8 FFKQEMELSLIGLQNAGKTSLVNTIATG 35 (177)
Q Consensus 8 ~~~~~~~i~i~G~~~~GKSsli~~l~~~ 35 (177)
..++..-|+|.|+.||||||+++.+.+.
T Consensus 16 ~~~~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 16 EGTQPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp TTCCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHHhc
Confidence 4456778999999999999999999753
|
| >3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X* | Back alignment and structure |
|---|
Probab=97.19 E-value=0.0003 Score=46.70 Aligned_cols=28 Identities=18% Similarity=0.362 Sum_probs=21.6
Q ss_pred cccccceeEEEEEcCCCCCHHHHHHHHhc
Q 030429 6 SLFFKQEMELSLIGLQNAGKTSLVNTIAT 34 (177)
Q Consensus 6 ~~~~~~~~~i~i~G~~~~GKSsli~~l~~ 34 (177)
.+..... -.+|+|+.|||||||++.+..
T Consensus 21 ~~~~~~g-~~~i~G~NGsGKStll~ai~~ 48 (182)
T 3kta_A 21 VIPFSKG-FTAIVGANGSGKSNIGDAILF 48 (182)
T ss_dssp EEECCSS-EEEEEECTTSSHHHHHHHHHH
T ss_pred EEecCCC-cEEEECCCCCCHHHHHHHHHH
Confidence 3444445 458999999999999999863
|
| >2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A | Back alignment and structure |
|---|
Probab=97.18 E-value=0.00022 Score=50.22 Aligned_cols=21 Identities=29% Similarity=0.290 Sum_probs=18.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 030429 14 ELSLIGLQNAGKTSLVNTIAT 34 (177)
Q Consensus 14 ~i~i~G~~~~GKSsli~~l~~ 34 (177)
-|+|+|++|||||||.+.|..
T Consensus 3 li~I~G~~GSGKSTla~~La~ 23 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQ 23 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 478999999999999999863
|
| >2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=97.18 E-value=0.0001 Score=48.86 Aligned_cols=20 Identities=35% Similarity=0.687 Sum_probs=18.8
Q ss_pred EEEEEcCCCCCHHHHHHHHh
Q 030429 14 ELSLIGLQNAGKTSLVNTIA 33 (177)
Q Consensus 14 ~i~i~G~~~~GKSsli~~l~ 33 (177)
.++|+|++|||||||++.+.
T Consensus 4 ~v~IvG~SGsGKSTL~~~L~ 23 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTLITRMM 23 (171)
T ss_dssp EEEEEESCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 68999999999999999997
|
| >1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=97.18 E-value=0.00026 Score=46.96 Aligned_cols=24 Identities=33% Similarity=0.464 Sum_probs=20.7
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhc
Q 030429 11 QEMELSLIGLQNAGKTSLVNTIAT 34 (177)
Q Consensus 11 ~~~~i~i~G~~~~GKSsli~~l~~ 34 (177)
..-.+++.|++|+|||+|++.+..
T Consensus 42 ~~~~~ll~G~~G~GKT~l~~~~~~ 65 (195)
T 1jbk_A 42 TKNNPVLIGEPGVGKTAIVEGLAQ 65 (195)
T ss_dssp SSCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCceEEECCCCCCHHHHHHHHHH
Confidence 345689999999999999999874
|
| >3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=97.18 E-value=0.0001 Score=51.88 Aligned_cols=30 Identities=23% Similarity=0.315 Sum_probs=24.2
Q ss_pred ecccccc---eeEEEEEcCCCCCHHHHHHHHhc
Q 030429 5 ISLFFKQ---EMELSLIGLQNAGKTSLVNTIAT 34 (177)
Q Consensus 5 ~~~~~~~---~~~i~i~G~~~~GKSsli~~l~~ 34 (177)
.++..+. .-.|+++|++||||||+.+.+..
T Consensus 38 ~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~ 70 (250)
T 3nwj_A 38 KAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMAR 70 (250)
T ss_dssp HHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHH
T ss_pred hhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHH
Confidence 3444555 66899999999999999999973
|
| >3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A* | Back alignment and structure |
|---|
Probab=97.18 E-value=0.00026 Score=49.21 Aligned_cols=23 Identities=22% Similarity=0.361 Sum_probs=20.6
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHh
Q 030429 11 QEMELSLIGLQNAGKTSLVNTIA 33 (177)
Q Consensus 11 ~~~~i~i~G~~~~GKSsli~~l~ 33 (177)
.++.|++.|++||||||+.+.+.
T Consensus 8 ~~~~i~i~G~~GsGKsTla~~la 30 (233)
T 3r20_A 8 GSLVVAVDGPAGTGKSSVSRGLA 30 (233)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHH
Confidence 45789999999999999999987
|
| >1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A* | Back alignment and structure |
|---|
Probab=97.18 E-value=0.00027 Score=46.29 Aligned_cols=21 Identities=38% Similarity=0.646 Sum_probs=19.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 030429 14 ELSLIGLQNAGKTSLVNTIAT 34 (177)
Q Consensus 14 ~i~i~G~~~~GKSsli~~l~~ 34 (177)
+|+++|.+||||||+.+.|..
T Consensus 9 ~i~l~G~~GsGKSTva~~La~ 29 (168)
T 1zuh_A 9 HLVLIGFMGSGKSSLAQELGL 29 (168)
T ss_dssp EEEEESCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 789999999999999999863
|
| >3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=97.17 E-value=0.00019 Score=56.76 Aligned_cols=32 Identities=28% Similarity=0.514 Sum_probs=28.0
Q ss_pred eeecccccceeEEEEEcCCCCCHHHHHHHHhc
Q 030429 3 LHISLFFKQEMELSLIGLQNAGKTSLVNTIAT 34 (177)
Q Consensus 3 ~~~~~~~~~~~~i~i~G~~~~GKSsli~~l~~ 34 (177)
.+.++..+..-.++++|+.|||||||++.+.+
T Consensus 372 ~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g 403 (598)
T 3qf4_B 372 KDITFHIKPGQKVALVGPTGSGKTTIVNLLMR 403 (598)
T ss_dssp CSEEEECCTTCEEEEECCTTSSTTHHHHHHTT
T ss_pred cceEEEEcCCCEEEEECCCCCcHHHHHHHHhc
Confidence 45677788888999999999999999999974
|
| >3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A* | Back alignment and structure |
|---|
Probab=97.17 E-value=0.00028 Score=49.83 Aligned_cols=23 Identities=30% Similarity=0.501 Sum_probs=20.3
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhc
Q 030429 12 EMELSLIGLQNAGKTSLVNTIAT 34 (177)
Q Consensus 12 ~~~i~i~G~~~~GKSsli~~l~~ 34 (177)
...|+++|.+||||||+.+.+..
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~ 26 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAK 26 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHH
Confidence 35799999999999999999873
|
| >2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.17 E-value=0.00015 Score=55.50 Aligned_cols=30 Identities=27% Similarity=0.355 Sum_probs=25.4
Q ss_pred ecccccceeEEEEEcCCCCCHHHHHHHHhc
Q 030429 5 ISLFFKQEMELSLIGLQNAGKTSLVNTIAT 34 (177)
Q Consensus 5 ~~~~~~~~~~i~i~G~~~~GKSsli~~l~~ 34 (177)
.++..+..-.++|+|+.|||||||++.+++
T Consensus 131 vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~G 160 (460)
T 2npi_A 131 IRMSNFEGPRVVIVGGSQTGKTSLSRTLCS 160 (460)
T ss_dssp HHHHSSSCCCEEEEESTTSSHHHHHHHHHH
T ss_pred CceEeCCCCEEEEECCCCCCHHHHHHHHhC
Confidence 345566777899999999999999999974
|
| >1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A* | Back alignment and structure |
|---|
Probab=97.15 E-value=0.00027 Score=46.46 Aligned_cols=21 Identities=19% Similarity=0.415 Sum_probs=19.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 030429 14 ELSLIGLQNAGKTSLVNTIAT 34 (177)
Q Consensus 14 ~i~i~G~~~~GKSsli~~l~~ 34 (177)
.|+++|.+||||||+.+.|..
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~ 24 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVGRELAR 24 (173)
T ss_dssp CEEEESCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999873
|
| >2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.15 E-value=0.00032 Score=50.19 Aligned_cols=25 Identities=24% Similarity=0.369 Sum_probs=22.2
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHh
Q 030429 9 FKQEMELSLIGLQNAGKTSLVNTIA 33 (177)
Q Consensus 9 ~~~~~~i~i~G~~~~GKSsli~~l~ 33 (177)
.+....|+|+|.+||||||+.+.|.
T Consensus 72 ~~~~~iI~I~G~~GSGKSTva~~La 96 (281)
T 2f6r_A 72 PSGLYVLGLTGISGSGKSSVAQRLK 96 (281)
T ss_dssp CTTCEEEEEEECTTSCHHHHHHHHH
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHH
Confidence 3456789999999999999999997
|
| >4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A | Back alignment and structure |
|---|
Probab=97.14 E-value=0.00015 Score=57.04 Aligned_cols=32 Identities=25% Similarity=0.524 Sum_probs=28.1
Q ss_pred eeecccccceeEEEEEcCCCCCHHHHHHHHhc
Q 030429 3 LHISLFFKQEMELSLIGLQNAGKTSLVNTIAT 34 (177)
Q Consensus 3 ~~~~~~~~~~~~i~i~G~~~~GKSsli~~l~~ 34 (177)
...++..+..-.++++|+.|||||||++.+.+
T Consensus 358 ~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g 389 (578)
T 4a82_A 358 KDINLSIEKGETVAFVGMSGGGKSTLINLIPR 389 (578)
T ss_dssp EEEEEEECTTCEEEEECSTTSSHHHHHTTTTT
T ss_pred eeeEEEECCCCEEEEECCCCChHHHHHHHHhc
Confidence 45677888888999999999999999999873
|
| >1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D* | Back alignment and structure |
|---|
Probab=97.14 E-value=0.00023 Score=51.49 Aligned_cols=23 Identities=17% Similarity=0.436 Sum_probs=20.8
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHh
Q 030429 11 QEMELSLIGLQNAGKTSLVNTIA 33 (177)
Q Consensus 11 ~~~~i~i~G~~~~GKSsli~~l~ 33 (177)
..-.++++|++||||||+++.+.
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~La 123 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLG 123 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHH
Confidence 45689999999999999999997
|
| >2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A* | Back alignment and structure |
|---|
Probab=97.13 E-value=0.00028 Score=46.96 Aligned_cols=21 Identities=29% Similarity=0.567 Sum_probs=19.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 030429 14 ELSLIGLQNAGKTSLVNTIAT 34 (177)
Q Consensus 14 ~i~i~G~~~~GKSsli~~l~~ 34 (177)
.|+++|.+||||||+.+.|..
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~ 24 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAK 24 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999863
|
| >2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A* | Back alignment and structure |
|---|
Probab=97.12 E-value=0.00026 Score=52.75 Aligned_cols=25 Identities=12% Similarity=0.283 Sum_probs=21.6
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhc
Q 030429 10 KQEMELSLIGLQNAGKTSLVNTIAT 34 (177)
Q Consensus 10 ~~~~~i~i~G~~~~GKSsli~~l~~ 34 (177)
+..-.++++|++|||||||++.+.+
T Consensus 134 ~~g~~i~ivG~~GsGKTTll~~l~~ 158 (372)
T 2ewv_A 134 RKMGLILVTGPTGSGKSTTIASMID 158 (372)
T ss_dssp SSSEEEEEECSSSSSHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHh
Confidence 4455799999999999999999974
|
| >3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni} | Back alignment and structure |
|---|
Probab=97.11 E-value=0.00038 Score=47.87 Aligned_cols=20 Identities=15% Similarity=0.313 Sum_probs=17.9
Q ss_pred EEEEEcCCCCCHHHHHHHHh
Q 030429 14 ELSLIGLQNAGKTSLVNTIA 33 (177)
Q Consensus 14 ~i~i~G~~~~GKSsli~~l~ 33 (177)
-|+++|+|||||+|....+.
T Consensus 31 iI~llGpPGsGKgTqa~~L~ 50 (217)
T 3umf_A 31 VIFVLGGPGSGKGTQCEKLV 50 (217)
T ss_dssp EEEEECCTTCCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 46779999999999999997
|
| >3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B* | Back alignment and structure |
|---|
Probab=97.11 E-value=0.00034 Score=51.19 Aligned_cols=25 Identities=20% Similarity=0.514 Sum_probs=22.2
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhc
Q 030429 10 KQEMELSLIGLQNAGKTSLVNTIAT 34 (177)
Q Consensus 10 ~~~~~i~i~G~~~~GKSsli~~l~~ 34 (177)
+++--++++|++||||||+++.+.+
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag 151 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLAN 151 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4567899999999999999999973
|
| >3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=97.10 E-value=0.00022 Score=56.32 Aligned_cols=32 Identities=22% Similarity=0.372 Sum_probs=28.1
Q ss_pred eeecccccceeEEEEEcCCCCCHHHHHHHHhc
Q 030429 3 LHISLFFKQEMELSLIGLQNAGKTSLVNTIAT 34 (177)
Q Consensus 3 ~~~~~~~~~~~~i~i~G~~~~GKSsli~~l~~ 34 (177)
...++..+..-.++++|+.|||||||++.+.+
T Consensus 360 ~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g 391 (587)
T 3qf4_A 360 SGVNFSVKPGSLVAVLGETGSGKSTLMNLIPR 391 (587)
T ss_dssp EEEEEEECTTCEEEEECSSSSSHHHHHHTTTT
T ss_pred eceEEEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 45677888888999999999999999999974
|
| >1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A* | Back alignment and structure |
|---|
Probab=97.10 E-value=0.00025 Score=53.56 Aligned_cols=23 Identities=13% Similarity=0.128 Sum_probs=20.3
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhc
Q 030429 12 EMELSLIGLQNAGKTSLVNTIAT 34 (177)
Q Consensus 12 ~~~i~i~G~~~~GKSsli~~l~~ 34 (177)
.=.++|+|++|||||||++.+.+
T Consensus 167 ggii~I~GpnGSGKTTlL~allg 189 (418)
T 1p9r_A 167 HGIILVTGPTGSGKSTTLYAGLQ 189 (418)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHh
Confidence 34689999999999999999974
|
| >1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A* | Back alignment and structure |
|---|
Probab=97.09 E-value=0.00035 Score=47.67 Aligned_cols=26 Identities=23% Similarity=0.392 Sum_probs=22.2
Q ss_pred cccceeEEEEEcCCCCCHHHHHHHHh
Q 030429 8 FFKQEMELSLIGLQNAGKTSLVNTIA 33 (177)
Q Consensus 8 ~~~~~~~i~i~G~~~~GKSsli~~l~ 33 (177)
..+....|+++|.+||||||+.+.+.
T Consensus 21 ~~~~~~~i~~~G~~GsGKsT~~~~l~ 46 (211)
T 1m7g_A 21 RNQRGLTIWLTGLSASGKSTLAVELE 46 (211)
T ss_dssp HTSSCEEEEEECSTTSSHHHHHHHHH
T ss_pred cCCCCCEEEEECCCCCCHHHHHHHHH
Confidence 34556789999999999999999986
|
| >3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A* | Back alignment and structure |
|---|
Probab=97.09 E-value=0.00038 Score=53.48 Aligned_cols=30 Identities=23% Similarity=0.327 Sum_probs=25.1
Q ss_pred eecccccceeEEEEEcCCCCCHHHHHHHHhc
Q 030429 4 HISLFFKQEMELSLIGLQNAGKTSLVNTIAT 34 (177)
Q Consensus 4 ~~~~~~~~~~~i~i~G~~~~GKSsli~~l~~ 34 (177)
..++..+. -.++|+|+.|||||||++.+.+
T Consensus 22 ~vsl~i~~-e~~~liG~nGsGKSTLl~~l~G 51 (483)
T 3euj_A 22 ARTFDFDE-LVTTLSGGNGAGKSTTMAGFVT 51 (483)
T ss_dssp EEEEECCS-SEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEEcc-ceEEEECCCCCcHHHHHHHHhc
Confidence 45566666 7789999999999999999973
|
| >2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2} | Back alignment and structure |
|---|
Probab=97.09 E-value=0.00031 Score=48.28 Aligned_cols=24 Identities=25% Similarity=0.270 Sum_probs=20.5
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHh
Q 030429 10 KQEMELSLIGLQNAGKTSLVNTIA 33 (177)
Q Consensus 10 ~~~~~i~i~G~~~~GKSsli~~l~ 33 (177)
+..--++++|++|+|||||+..++
T Consensus 21 ~~G~~~~i~G~~GsGKTtl~~~l~ 44 (235)
T 2w0m_A 21 PQGFFIALTGEPGTGKTIFSLHFI 44 (235)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHH
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHH
Confidence 344568899999999999999997
|
| >3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A* | Back alignment and structure |
|---|
Probab=97.08 E-value=0.00044 Score=51.34 Aligned_cols=28 Identities=29% Similarity=0.497 Sum_probs=22.5
Q ss_pred ecccccceeEEEEEcCCCCCHHHHHHHHh
Q 030429 5 ISLFFKQEMELSLIGLQNAGKTSLVNTIA 33 (177)
Q Consensus 5 ~~~~~~~~~~i~i~G~~~~GKSsli~~l~ 33 (177)
..+..+..+ .+|+|+.|+|||||++.++
T Consensus 17 ~~i~~~~g~-~~i~G~NGaGKTTll~ai~ 44 (365)
T 3qf7_A 17 VDIEFQSGI-TVVEGPNGAGKSSLFEAIS 44 (365)
T ss_dssp EEEECCSEE-EEEECCTTSSHHHHHHHHH
T ss_pred eEEecCCCe-EEEECCCCCCHHHHHHHHH
Confidence 345556676 4589999999999999986
|
| >1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10 | Back alignment and structure |
|---|
Probab=97.08 E-value=0.00035 Score=46.09 Aligned_cols=22 Identities=23% Similarity=0.456 Sum_probs=19.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHhc
Q 030429 13 MELSLIGLQNAGKTSLVNTIAT 34 (177)
Q Consensus 13 ~~i~i~G~~~~GKSsli~~l~~ 34 (177)
..++++|.+|||||||+.++..
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~ 26 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVA 26 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 3588999999999999999973
|
| >4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A | Back alignment and structure |
|---|
Probab=97.08 E-value=0.00044 Score=47.96 Aligned_cols=25 Identities=20% Similarity=0.379 Sum_probs=22.1
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhc
Q 030429 10 KQEMELSLIGLQNAGKTSLVNTIAT 34 (177)
Q Consensus 10 ~~~~~i~i~G~~~~GKSsli~~l~~ 34 (177)
.....|++.|++||||||+++.+..
T Consensus 24 ~~g~~i~i~G~~GsGKsT~~~~l~~ 48 (229)
T 4eaq_A 24 AMSAFITFEGPEGSGKTTVINEVYH 48 (229)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHH
Confidence 3667899999999999999999974
|
| >1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A* | Back alignment and structure |
|---|
Probab=97.07 E-value=0.00011 Score=50.00 Aligned_cols=20 Identities=30% Similarity=0.612 Sum_probs=18.6
Q ss_pred EEEEEcCCCCCHHHHHHHHh
Q 030429 14 ELSLIGLQNAGKTSLVNTIA 33 (177)
Q Consensus 14 ~i~i~G~~~~GKSsli~~l~ 33 (177)
-|+|.|.+||||||+++.|.
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~ 21 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLS 21 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHH
Confidence 48999999999999999986
|
| >1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A* | Back alignment and structure |
|---|
Probab=97.07 E-value=0.00029 Score=51.60 Aligned_cols=22 Identities=36% Similarity=0.456 Sum_probs=19.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHhc
Q 030429 13 MELSLIGLQNAGKTSLVNTIAT 34 (177)
Q Consensus 13 ~~i~i~G~~~~GKSsli~~l~~ 34 (177)
-.++++|++|+|||||++.+.+
T Consensus 52 ~~~ll~Gp~G~GKTTLa~~ia~ 73 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLAHIIAS 73 (334)
T ss_dssp CCEEEESSTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHH
Confidence 4589999999999999999984
|
| >1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A | Back alignment and structure |
|---|
Probab=97.02 E-value=0.0004 Score=51.77 Aligned_cols=29 Identities=17% Similarity=0.198 Sum_probs=24.8
Q ss_pred cccccceeEEEEEcCCCCCHHHHHHHHhc
Q 030429 6 SLFFKQEMELSLIGLQNAGKTSLVNTIAT 34 (177)
Q Consensus 6 ~~~~~~~~~i~i~G~~~~GKSsli~~l~~ 34 (177)
++..+..-.++++|++|+|||||++.+.+
T Consensus 163 ~~~i~~~~~i~l~G~~GsGKSTl~~~l~~ 191 (377)
T 1svm_A 163 VYNIPKKRYWLFKGPIDSGKTTLAAALLE 191 (377)
T ss_dssp HHCCTTCCEEEEECSTTSSHHHHHHHHHH
T ss_pred ccccCCCCEEEEECCCCCCHHHHHHHHHh
Confidence 44566777899999999999999999984
|
| >2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=97.02 E-value=0.0003 Score=46.46 Aligned_cols=24 Identities=29% Similarity=0.411 Sum_probs=20.7
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhc
Q 030429 11 QEMELSLIGLQNAGKTSLVNTIAT 34 (177)
Q Consensus 11 ~~~~i~i~G~~~~GKSsli~~l~~ 34 (177)
..-.+++.|++|+|||++++.+..
T Consensus 42 ~~~~vll~G~~G~GKT~la~~~~~ 65 (187)
T 2p65_A 42 TKNNPILLGDPGVGKTAIVEGLAI 65 (187)
T ss_dssp SSCEEEEESCGGGCHHHHHHHHHH
T ss_pred CCCceEEECCCCCCHHHHHHHHHH
Confidence 345789999999999999999874
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A | Back alignment and structure |
|---|
Probab=97.00 E-value=0.00046 Score=57.28 Aligned_cols=35 Identities=26% Similarity=0.402 Sum_probs=29.5
Q ss_pred eeecccccceeEEEEEcCCCCCHHHHHHHHhcCCC
Q 030429 3 LHISLFFKQEMELSLIGLQNAGKTSLVNTIATGGY 37 (177)
Q Consensus 3 ~~~~~~~~~~~~i~i~G~~~~GKSsli~~l~~~~~ 37 (177)
...++..+..-.++++|+.|||||||++.+.++..
T Consensus 452 ~~vsl~I~~Ge~v~LiGpNGsGKSTLLk~LagG~i 486 (986)
T 2iw3_A 452 NKTQLRLKRARRYGICGPNGCGKSTLMRAIANGQV 486 (986)
T ss_dssp EEEEEEEETTCEEEEECSTTSSHHHHHHHHHHTCS
T ss_pred ecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCc
Confidence 34677777888899999999999999999986543
|
| >2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=97.00 E-value=0.0006 Score=45.96 Aligned_cols=25 Identities=16% Similarity=0.407 Sum_probs=22.0
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhc
Q 030429 10 KQEMELSLIGLQNAGKTSLVNTIAT 34 (177)
Q Consensus 10 ~~~~~i~i~G~~~~GKSsli~~l~~ 34 (177)
.....|+++|.+||||||+.+.|..
T Consensus 10 ~~~~iIgltG~~GSGKSTva~~L~~ 34 (192)
T 2grj_A 10 HHHMVIGVTGKIGTGKSTVCEILKN 34 (192)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHH
T ss_pred ccceEEEEECCCCCCHHHHHHHHHH
Confidence 3567899999999999999999974
|
| >3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A | Back alignment and structure |
|---|
Probab=96.99 E-value=0.00048 Score=47.52 Aligned_cols=24 Identities=21% Similarity=0.344 Sum_probs=21.1
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhc
Q 030429 11 QEMELSLIGLQNAGKTSLVNTIAT 34 (177)
Q Consensus 11 ~~~~i~i~G~~~~GKSsli~~l~~ 34 (177)
..-.+++.|++|+|||+|++.+..
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~ 74 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACA 74 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHH
Confidence 456799999999999999999873
|
| >1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A* | Back alignment and structure |
|---|
Probab=96.97 E-value=0.00052 Score=44.30 Aligned_cols=23 Identities=35% Similarity=0.642 Sum_probs=18.9
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHh
Q 030429 10 KQEMELSLIGLQNAGKTSLVNTIA 33 (177)
Q Consensus 10 ~~~~~i~i~G~~~~GKSsli~~l~ 33 (177)
...++ +|+|+.|+|||||+.++.
T Consensus 22 ~~g~~-~I~G~NGsGKStil~Ai~ 44 (149)
T 1f2t_A 22 KEGIN-LIIGQNGSGKSSLLDAIL 44 (149)
T ss_dssp CSEEE-EEECCTTSSHHHHHHHHH
T ss_pred CCCeE-EEECCCCCCHHHHHHHHH
Confidence 34454 788999999999999985
|
| >1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=96.97 E-value=0.00054 Score=48.12 Aligned_cols=23 Identities=30% Similarity=0.421 Sum_probs=20.4
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhc
Q 030429 12 EMELSLIGLQNAGKTSLVNTIAT 34 (177)
Q Consensus 12 ~~~i~i~G~~~~GKSsli~~l~~ 34 (177)
+..++++|++|+|||||++.+.+
T Consensus 45 ~~~vll~G~~GtGKT~la~~la~ 67 (257)
T 1lv7_A 45 PKGVLMVGPPGTGKTLLAKAIAG 67 (257)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHHHHH
Confidence 34699999999999999999974
|
| >1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A* | Back alignment and structure |
|---|
Probab=96.96 E-value=0.00045 Score=49.64 Aligned_cols=28 Identities=18% Similarity=0.118 Sum_probs=22.7
Q ss_pred ccccceeEEEEEcCCCCCHHHHHHHHhc
Q 030429 7 LFFKQEMELSLIGLQNAGKTSLVNTIAT 34 (177)
Q Consensus 7 ~~~~~~~~i~i~G~~~~GKSsli~~l~~ 34 (177)
+..+..--++|+|++|+|||||+..+.+
T Consensus 30 ~~l~~G~~~~i~G~~G~GKTTl~~~ia~ 57 (296)
T 1cr0_A 30 LGARGGEVIMVTSGSGMGKSTFVRQQAL 57 (296)
T ss_dssp CSBCTTCEEEEEESTTSSHHHHHHHHHH
T ss_pred cCCCCCeEEEEEeCCCCCHHHHHHHHHH
Confidence 3445555789999999999999999874
|
| >2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A* | Back alignment and structure |
|---|
Probab=96.95 E-value=0.00049 Score=46.95 Aligned_cols=25 Identities=20% Similarity=0.193 Sum_probs=21.4
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhc
Q 030429 10 KQEMELSLIGLQNAGKTSLVNTIAT 34 (177)
Q Consensus 10 ~~~~~i~i~G~~~~GKSsli~~l~~ 34 (177)
+..--++++|++|+|||||+..+..
T Consensus 18 ~~G~~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 18 APGVLTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp CTTSEEEEECSTTSSHHHHHHHHHH
T ss_pred cCCEEEEEECCCCCCHHHHHHHHHH
Confidence 3445689999999999999999985
|
| >3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli} | Back alignment and structure |
|---|
Probab=96.94 E-value=0.0005 Score=44.03 Aligned_cols=26 Identities=12% Similarity=0.200 Sum_probs=22.4
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcC
Q 030429 10 KQEMELSLIGLQNAGKTSLVNTIATG 35 (177)
Q Consensus 10 ~~~~~i~i~G~~~~GKSsli~~l~~~ 35 (177)
.....|++.|++|+|||++.+.+...
T Consensus 22 ~~~~~vll~G~~GtGKt~lA~~i~~~ 47 (145)
T 3n70_A 22 ETDIAVWLYGAPGTGRMTGARYLHQF 47 (145)
T ss_dssp TCCSCEEEESSTTSSHHHHHHHHHHS
T ss_pred CCCCCEEEECCCCCCHHHHHHHHHHh
Confidence 45668999999999999999999743
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=96.94 E-value=0.00058 Score=53.30 Aligned_cols=28 Identities=25% Similarity=0.466 Sum_probs=23.7
Q ss_pred cccceeEEEEEcCCCCCHHHHHHHHhcC
Q 030429 8 FFKQEMELSLIGLQNAGKTSLVNTIATG 35 (177)
Q Consensus 8 ~~~~~~~i~i~G~~~~GKSsli~~l~~~ 35 (177)
..+..-.++++|+.|||||||++.+.+-
T Consensus 43 ~i~~Ge~~~LvG~NGaGKSTLlk~l~Gl 70 (538)
T 1yqt_A 43 VVKEGMVVGIVGPNGTGKSTAVKILAGQ 70 (538)
T ss_dssp CCCTTSEEEEECCTTSSHHHHHHHHHTS
T ss_pred cCCCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3456668999999999999999999853
|
| >2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426} | Back alignment and structure |
|---|
Probab=96.93 E-value=0.00059 Score=46.07 Aligned_cols=22 Identities=41% Similarity=0.418 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHhc
Q 030429 13 MELSLIGLQNAGKTSLVNTIAT 34 (177)
Q Consensus 13 ~~i~i~G~~~~GKSsli~~l~~ 34 (177)
..+++.|++|+|||+|+..+.+
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~ 76 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIAN 76 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 6799999999999999999874
|
| >1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=96.92 E-value=0.00054 Score=47.48 Aligned_cols=25 Identities=24% Similarity=0.339 Sum_probs=21.4
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhc
Q 030429 10 KQEMELSLIGLQNAGKTSLVNTIAT 34 (177)
Q Consensus 10 ~~~~~i~i~G~~~~GKSsli~~l~~ 34 (177)
+..--++++|++|+|||||+..++.
T Consensus 22 ~~G~~~~i~G~~GsGKTtl~~~l~~ 46 (243)
T 1n0w_A 22 ETGSITEMFGEFRTGKTQICHTLAV 46 (243)
T ss_dssp ETTSEEEEECCTTSSHHHHHHHHHH
T ss_pred cCCeEEEEECCCCCcHHHHHHHHHH
Confidence 3445689999999999999999985
|
| >3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A | Back alignment and structure |
|---|
Probab=96.92 E-value=0.0006 Score=49.02 Aligned_cols=25 Identities=20% Similarity=0.238 Sum_probs=21.0
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhc
Q 030429 10 KQEMELSLIGLQNAGKTSLVNTIAT 34 (177)
Q Consensus 10 ~~~~~i~i~G~~~~GKSsli~~l~~ 34 (177)
+.+.-+++.|+||+|||+|.+.+..
T Consensus 34 ~~p~~lLl~GppGtGKT~la~aiA~ 58 (293)
T 3t15_A 34 KVPLILGIWGGKGQGKSFQCELVFR 58 (293)
T ss_dssp CCCSEEEEEECTTSCHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3446788889999999999999973
|
| >2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A* | Back alignment and structure |
|---|
Probab=96.92 E-value=0.0005 Score=50.68 Aligned_cols=29 Identities=21% Similarity=0.351 Sum_probs=24.8
Q ss_pred ccccceeEEEEEcCCCCCHHHHHHHHhcC
Q 030429 7 LFFKQEMELSLIGLQNAGKTSLVNTIATG 35 (177)
Q Consensus 7 ~~~~~~~~i~i~G~~~~GKSsli~~l~~~ 35 (177)
+...+.=+++++|++|+|||||++.+.+.
T Consensus 66 l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~ 94 (347)
T 2obl_A 66 LTCGIGQRIGIFAGSGVGKSTLLGMICNG 94 (347)
T ss_dssp SCEETTCEEEEEECTTSSHHHHHHHHHHH
T ss_pred eeecCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 44566678999999999999999999854
|
| >1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A | Back alignment and structure |
|---|
Probab=96.91 E-value=0.00065 Score=48.83 Aligned_cols=22 Identities=18% Similarity=0.288 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHhc
Q 030429 13 MELSLIGLQNAGKTSLVNTIAT 34 (177)
Q Consensus 13 ~~i~i~G~~~~GKSsli~~l~~ 34 (177)
..|+++|.+||||||+.+.+..
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999974
|
| >1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=96.90 E-value=0.00066 Score=47.12 Aligned_cols=25 Identities=20% Similarity=0.462 Sum_probs=21.9
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhc
Q 030429 10 KQEMELSLIGLQNAGKTSLVNTIAT 34 (177)
Q Consensus 10 ~~~~~i~i~G~~~~GKSsli~~l~~ 34 (177)
.....|+++|++||||||+.+.+..
T Consensus 14 ~~~~~i~i~G~~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 14 MKTIQIAIDGPASSGKSTVAKIIAK 38 (236)
T ss_dssp CCCCEEEEECSSCSSHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHH
Confidence 4567899999999999999999874
|
| >4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=96.90 E-value=0.00035 Score=60.01 Aligned_cols=32 Identities=22% Similarity=0.383 Sum_probs=29.0
Q ss_pred ceeecccccceeEEEEEcCCCCCHHHHHHHHh
Q 030429 2 YLHISLFFKQEMELSLIGLQNAGKTSLVNTIA 33 (177)
Q Consensus 2 ~~~~~~~~~~~~~i~i~G~~~~GKSsli~~l~ 33 (177)
.++.++..+..-+|+++|++|||||||++.+.
T Consensus 1095 L~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~ 1126 (1321)
T 4f4c_A 1095 LKGLSFSVEPGQTLALVGPSGCGKSTVVALLE 1126 (1321)
T ss_dssp EEEEEEEECTTCEEEEECSTTSSTTSHHHHHT
T ss_pred ccceeEEECCCCEEEEECCCCChHHHHHHHHh
Confidence 35678888899999999999999999999997
|
| >3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B} | Back alignment and structure |
|---|
Probab=96.86 E-value=0.00075 Score=46.76 Aligned_cols=23 Identities=39% Similarity=0.540 Sum_probs=20.0
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHh
Q 030429 11 QEMELSLIGLQNAGKTSLVNTIA 33 (177)
Q Consensus 11 ~~~~i~i~G~~~~GKSsli~~l~ 33 (177)
..++++++|+|||||||+...+.
T Consensus 7 ~~~~~~~~G~pGsGKsT~a~~L~ 29 (230)
T 3gmt_A 7 HHMRLILLGAPGAGKGTQANFIK 29 (230)
T ss_dssp --CEEEEECCTTSCHHHHHHHHH
T ss_pred cccceeeECCCCCCHHHHHHHHH
Confidence 46789999999999999999987
|
| >4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=96.84 E-value=0.00021 Score=53.82 Aligned_cols=30 Identities=20% Similarity=0.308 Sum_probs=25.2
Q ss_pred eeecccccceeEEEEEcCCCCCHHHHHHHHh
Q 030429 3 LHISLFFKQEMELSLIGLQNAGKTSLVNTIA 33 (177)
Q Consensus 3 ~~~~~~~~~~~~i~i~G~~~~GKSsli~~l~ 33 (177)
...++..... .++|+|+.|+|||||++.+.
T Consensus 52 ~~v~l~~~~G-~~~lvG~NGaGKStLl~aI~ 81 (415)
T 4aby_A 52 TQLELELGGG-FCAFTGETGAGKSIIVDALG 81 (415)
T ss_dssp EEEEEECCSS-EEEEEESHHHHHHHHTHHHH
T ss_pred eeEEEecCCC-cEEEECCCCCCHHHHHHHHH
Confidence 3456777778 88999999999999998874
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=96.83 E-value=0.00067 Score=52.97 Aligned_cols=27 Identities=26% Similarity=0.432 Sum_probs=23.3
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHhcC
Q 030429 9 FKQEMELSLIGLQNAGKTSLVNTIATG 35 (177)
Q Consensus 9 ~~~~~~i~i~G~~~~GKSsli~~l~~~ 35 (177)
.+..-.++++|+.|||||||++.+.+-
T Consensus 309 i~~Ge~~~i~G~NGsGKSTLlk~l~Gl 335 (538)
T 1yqt_A 309 IKKGEVIGIVGPNGIGKTTFVKMLAGV 335 (538)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHHTS
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 355668999999999999999999854
|
| >1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1 | Back alignment and structure |
|---|
Probab=96.82 E-value=0.00055 Score=49.84 Aligned_cols=22 Identities=36% Similarity=0.456 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 030429 14 ELSLIGLQNAGKTSLVNTIATG 35 (177)
Q Consensus 14 ~i~i~G~~~~GKSsli~~l~~~ 35 (177)
-++++|+.|||||||++.+.+.
T Consensus 6 v~~i~G~~GaGKTTll~~l~~~ 27 (318)
T 1nij_A 6 VTLLTGFLGAGKTTLLRHILNE 27 (318)
T ss_dssp EEEEEESSSSSCHHHHHHHHHS
T ss_pred EEEEEecCCCCHHHHHHHHHhh
Confidence 5689999999999999999854
|
| >1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=96.81 E-value=0.00062 Score=46.30 Aligned_cols=23 Identities=22% Similarity=0.229 Sum_probs=19.6
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhc
Q 030429 12 EMELSLIGLQNAGKTSLVNTIAT 34 (177)
Q Consensus 12 ~~~i~i~G~~~~GKSsli~~l~~ 34 (177)
.-.+++.|+||+||||++.++.+
T Consensus 58 kn~ili~GPPGtGKTt~a~ala~ 80 (212)
T 1tue_A 58 KNCLVFCGPANTGKSYFGMSFIH 80 (212)
T ss_dssp CSEEEEESCGGGCHHHHHHHHHH
T ss_pred ccEEEEECCCCCCHHHHHHHHHH
Confidence 34699999999999999888863
|
| >2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=96.81 E-value=0.00075 Score=45.75 Aligned_cols=21 Identities=29% Similarity=0.360 Sum_probs=19.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 030429 14 ELSLIGLQNAGKTSLVNTIAT 34 (177)
Q Consensus 14 ~i~i~G~~~~GKSsli~~l~~ 34 (177)
.+++.|++|+|||++++.+..
T Consensus 40 ~~ll~G~~G~GKT~l~~~l~~ 60 (226)
T 2chg_A 40 HLLFSGPPGTGKTATAIALAR 60 (226)
T ss_dssp CEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 499999999999999999873
|
| >2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=96.81 E-value=0.00075 Score=51.33 Aligned_cols=29 Identities=21% Similarity=0.260 Sum_probs=24.8
Q ss_pred ccccceeEEEEEcCCCCCHHHHHHHHhcC
Q 030429 7 LFFKQEMELSLIGLQNAGKTSLVNTIATG 35 (177)
Q Consensus 7 ~~~~~~~~i~i~G~~~~GKSsli~~l~~~ 35 (177)
+...+.=+++++|++|||||||++.+.+.
T Consensus 152 l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~ 180 (438)
T 2dpy_A 152 LTVGRGQRMGLFAGSGVGKSVLLGMMARY 180 (438)
T ss_dssp SCCBTTCEEEEEECTTSSHHHHHHHHHHH
T ss_pred EEecCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 45566778999999999999999999854
|
| >3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=96.81 E-value=0.00084 Score=47.79 Aligned_cols=25 Identities=32% Similarity=0.416 Sum_probs=21.7
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhc
Q 030429 10 KQEMELSLIGLQNAGKTSLVNTIAT 34 (177)
Q Consensus 10 ~~~~~i~i~G~~~~GKSsli~~l~~ 34 (177)
+..-.+++.|++|+|||+|++.+..
T Consensus 49 ~~~~~~ll~G~~GtGKT~la~~la~ 73 (285)
T 3h4m_A 49 EPPKGILLYGPPGTGKTLLAKAVAT 73 (285)
T ss_dssp CCCSEEEEESSSSSSHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHH
Confidence 3456799999999999999999974
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=96.81 E-value=0.00067 Score=52.95 Aligned_cols=27 Identities=19% Similarity=0.336 Sum_probs=22.9
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHhcC
Q 030429 9 FKQEMELSLIGLQNAGKTSLVNTIATG 35 (177)
Q Consensus 9 ~~~~~~i~i~G~~~~GKSsli~~l~~~ 35 (177)
.+..-.++++|+.|||||||++.+.+-
T Consensus 291 i~~Gei~~i~G~nGsGKSTLl~~l~Gl 317 (538)
T 3ozx_A 291 AKEGEIIGILGPNGIGKTTFARILVGE 317 (538)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHTTS
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 455667899999999999999999853
|
| >2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.81 E-value=0.00091 Score=46.89 Aligned_cols=25 Identities=36% Similarity=0.417 Sum_probs=21.4
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhc
Q 030429 10 KQEMELSLIGLQNAGKTSLVNTIAT 34 (177)
Q Consensus 10 ~~~~~i~i~G~~~~GKSsli~~l~~ 34 (177)
+..-.+++.|++|+|||++++.+..
T Consensus 37 ~~~~~vll~G~~GtGKT~la~~la~ 61 (262)
T 2qz4_A 37 KVPKGALLLGPPGCGKTLLAKAVAT 61 (262)
T ss_dssp CCCCEEEEESCTTSSHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHH
Confidence 3445689999999999999999974
|
| >1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A* | Back alignment and structure |
|---|
Probab=96.80 E-value=0.00075 Score=46.33 Aligned_cols=21 Identities=29% Similarity=0.431 Sum_probs=19.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 030429 14 ELSLIGLQNAGKTSLVNTIAT 34 (177)
Q Consensus 14 ~i~i~G~~~~GKSsli~~l~~ 34 (177)
.+++.|++|+|||||++.+..
T Consensus 47 ~~ll~G~~G~GKT~l~~~~~~ 67 (250)
T 1njg_A 47 AYLFSGTRGVGKTSIARLLAK 67 (250)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999874
|
| >3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=96.79 E-value=0.00073 Score=48.42 Aligned_cols=23 Identities=39% Similarity=0.466 Sum_probs=20.9
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhc
Q 030429 12 EMELSLIGLQNAGKTSLVNTIAT 34 (177)
Q Consensus 12 ~~~i~i~G~~~~GKSsli~~l~~ 34 (177)
.-.+++.|++|+|||++++.+.+
T Consensus 54 ~~~vll~Gp~GtGKT~la~~la~ 76 (297)
T 3b9p_A 54 AKGLLLFGPPGNGKTLLARAVAT 76 (297)
T ss_dssp CSEEEEESSSSSCHHHHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHHHHH
Confidence 56899999999999999999974
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* | Back alignment and structure |
|---|
Probab=96.78 E-value=0.00078 Score=53.34 Aligned_cols=27 Identities=22% Similarity=0.426 Sum_probs=23.2
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHhcC
Q 030429 9 FKQEMELSLIGLQNAGKTSLVNTIATG 35 (177)
Q Consensus 9 ~~~~~~i~i~G~~~~GKSsli~~l~~~ 35 (177)
.+..-.++++|+.|+|||||++.+.+-
T Consensus 379 v~~Gei~~i~G~NGsGKSTLlk~l~Gl 405 (607)
T 3bk7_A 379 IRKGEVIGIVGPNGIGKTTFVKMLAGV 405 (607)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHHTS
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 455667899999999999999999854
|
| >4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=96.77 E-value=0.00078 Score=57.95 Aligned_cols=32 Identities=16% Similarity=0.363 Sum_probs=28.7
Q ss_pred eeecccccceeEEEEEcCCCCCHHHHHHHHhc
Q 030429 3 LHISLFFKQEMELSLIGLQNAGKTSLVNTIAT 34 (177)
Q Consensus 3 ~~~~~~~~~~~~i~i~G~~~~GKSsli~~l~~ 34 (177)
.+.++..+..-.++++|+.|||||||++.+.+
T Consensus 435 ~~isl~i~~G~~vaivG~sGsGKSTll~ll~~ 466 (1321)
T 4f4c_A 435 RGMNLRVNAGQTVALVGSSGCGKSTIISLLLR 466 (1321)
T ss_dssp EEEEEEECTTCEEEEEECSSSCHHHHHHHHTT
T ss_pred eceEEeecCCcEEEEEecCCCcHHHHHHHhcc
Confidence 56778888899999999999999999999973
|
| >3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=96.77 E-value=0.00084 Score=48.41 Aligned_cols=25 Identities=28% Similarity=0.355 Sum_probs=21.7
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhc
Q 030429 10 KQEMELSLIGLQNAGKTSLVNTIAT 34 (177)
Q Consensus 10 ~~~~~i~i~G~~~~GKSsli~~l~~ 34 (177)
+..-.|++.|++|+|||+|++.+.+
T Consensus 47 ~~~~~vLL~Gp~GtGKT~la~ala~ 71 (301)
T 3cf0_A 47 TPSKGVLFYGPPGCGKTLLAKAIAN 71 (301)
T ss_dssp CCCSEEEEECSSSSSHHHHHHHHHH
T ss_pred CCCceEEEECCCCcCHHHHHHHHHH
Confidence 4455799999999999999999984
|
| >3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A* | Back alignment and structure |
|---|
Probab=96.77 E-value=0.00096 Score=48.02 Aligned_cols=24 Identities=25% Similarity=0.439 Sum_probs=20.3
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHh
Q 030429 10 KQEMELSLIGLQNAGKTSLVNTIA 33 (177)
Q Consensus 10 ~~~~~i~i~G~~~~GKSsli~~l~ 33 (177)
+....+++.|++|+|||++++.+.
T Consensus 65 ~~~~~vll~G~~GtGKT~la~~la 88 (309)
T 3syl_A 65 TPTLHMSFTGNPGTGKTTVALKMA 88 (309)
T ss_dssp CCCCEEEEEECTTSSHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHH
Confidence 344579999999999999998765
|
| >1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A | Back alignment and structure |
|---|
Probab=96.75 E-value=0.00083 Score=47.83 Aligned_cols=24 Identities=25% Similarity=0.238 Sum_probs=20.6
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhc
Q 030429 11 QEMELSLIGLQNAGKTSLVNTIAT 34 (177)
Q Consensus 11 ~~~~i~i~G~~~~GKSsli~~l~~ 34 (177)
..--++|+|++|+|||||+..+..
T Consensus 29 ~G~i~~i~G~~GsGKTtl~~~l~~ 52 (279)
T 1nlf_A 29 AGTVGALVSPGGAGKSMLALQLAA 52 (279)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHH
Confidence 445689999999999999999874
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A | Back alignment and structure |
|---|
Probab=96.74 E-value=0.00046 Score=57.28 Aligned_cols=33 Identities=24% Similarity=0.435 Sum_probs=28.0
Q ss_pred eeecccccceeEEEEEcCCCCCHHHHHHHHhcC
Q 030429 3 LHISLFFKQEMELSLIGLQNAGKTSLVNTIATG 35 (177)
Q Consensus 3 ~~~~~~~~~~~~i~i~G~~~~GKSsli~~l~~~ 35 (177)
...++..+..-.++|+|+.|||||||++.+.+-
T Consensus 690 ~dVSl~I~~GeivaIiGpNGSGKSTLLklLaGl 722 (986)
T 2iw3_A 690 TDINFQCSLSSRIAVIGPNGAGKSTLINVLTGE 722 (986)
T ss_dssp EEEEEEEETTCEEEECSCCCHHHHHHHHHHTTS
T ss_pred eccEEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 345677778889999999999999999999853
|
| >1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10 | Back alignment and structure |
|---|
Probab=96.74 E-value=0.0013 Score=47.69 Aligned_cols=25 Identities=20% Similarity=0.404 Sum_probs=21.4
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHh
Q 030429 9 FKQEMELSLIGLQNAGKTSLVNTIA 33 (177)
Q Consensus 9 ~~~~~~i~i~G~~~~GKSsli~~l~ 33 (177)
.+..-.|+++|++||||||++..+.
T Consensus 101 ~~~~~vi~ivG~~GsGKTTl~~~LA 125 (306)
T 1vma_A 101 PEPPFVIMVVGVNGTGKTTSCGKLA 125 (306)
T ss_dssp SSSCEEEEEECCTTSSHHHHHHHHH
T ss_pred CCCCeEEEEEcCCCChHHHHHHHHH
Confidence 3455678999999999999999987
|
| >3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B | Back alignment and structure |
|---|
Probab=96.74 E-value=0.0013 Score=48.27 Aligned_cols=27 Identities=33% Similarity=0.596 Sum_probs=21.2
Q ss_pred cccccceeEEEEEcCCCCCHHHHHHHHh
Q 030429 6 SLFFKQEMELSLIGLQNAGKTSLVNTIA 33 (177)
Q Consensus 6 ~~~~~~~~~i~i~G~~~~GKSsli~~l~ 33 (177)
.+.....++ +|+|+.|+|||||+.++.
T Consensus 18 ~i~f~~~~~-~i~G~NGsGKS~lleAi~ 44 (339)
T 3qkt_A 18 VVEFKEGIN-LIIGQNGSGKSSLLDAIL 44 (339)
T ss_dssp EEECCSEEE-EEECCTTSSHHHHHHHHH
T ss_pred EEcCCCCeE-EEECCCCCCHHHHHHHHH
Confidence 344455666 689999999999999874
|
| >3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A* | Back alignment and structure |
|---|
Probab=96.73 E-value=0.0011 Score=44.87 Aligned_cols=21 Identities=24% Similarity=0.422 Sum_probs=19.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 030429 14 ELSLIGLQNAGKTSLVNTIAT 34 (177)
Q Consensus 14 ~i~i~G~~~~GKSsli~~l~~ 34 (177)
.|+|.|++||||||+.+.+..
T Consensus 4 ~i~i~G~~GsGKst~~~~la~ 24 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAA 24 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999863
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=96.71 E-value=0.00099 Score=52.00 Aligned_cols=25 Identities=24% Similarity=0.453 Sum_probs=21.2
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhcC
Q 030429 11 QEMELSLIGLQNAGKTSLVNTIATG 35 (177)
Q Consensus 11 ~~~~i~i~G~~~~GKSsli~~l~~~ 35 (177)
..--++++|+.|||||||++.+.+-
T Consensus 24 ~Gei~gLiGpNGaGKSTLlkiL~Gl 48 (538)
T 3ozx_A 24 NNTILGVLGKNGVGKTTVLKILAGE 48 (538)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcC
Confidence 3356799999999999999999853
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.71 E-value=0.00089 Score=52.99 Aligned_cols=26 Identities=23% Similarity=0.418 Sum_probs=22.2
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcC
Q 030429 10 KQEMELSLIGLQNAGKTSLVNTIATG 35 (177)
Q Consensus 10 ~~~~~i~i~G~~~~GKSsli~~l~~~ 35 (177)
+..-.++++|+.|+|||||++.+.+-
T Consensus 101 ~~Gei~~LvGpNGaGKSTLLkiL~Gl 126 (608)
T 3j16_B 101 RPGQVLGLVGTNGIGKSTALKILAGK 126 (608)
T ss_dssp CTTSEEEEECCTTSSHHHHHHHHHTS
T ss_pred CCCCEEEEECCCCChHHHHHHHHhcC
Confidence 34557899999999999999999853
|
| >1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A* | Back alignment and structure |
|---|
Probab=96.69 E-value=0.0013 Score=46.51 Aligned_cols=26 Identities=31% Similarity=0.344 Sum_probs=22.5
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHhc
Q 030429 9 FKQEMELSLIGLQNAGKTSLVNTIAT 34 (177)
Q Consensus 9 ~~~~~~i~i~G~~~~GKSsli~~l~~ 34 (177)
......+++.|++|+|||++++.+..
T Consensus 61 ~~~~~~vLl~G~~GtGKT~la~~ia~ 86 (272)
T 1d2n_A 61 RTPLVSVLLEGPPHSGKTALAAKIAE 86 (272)
T ss_dssp SCSEEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCcHHHHHHHHHH
Confidence 34567899999999999999999974
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* | Back alignment and structure |
|---|
Probab=96.69 E-value=0.0011 Score=52.53 Aligned_cols=27 Identities=30% Similarity=0.485 Sum_probs=23.1
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHhcC
Q 030429 9 FKQEMELSLIGLQNAGKTSLVNTIATG 35 (177)
Q Consensus 9 ~~~~~~i~i~G~~~~GKSsli~~l~~~ 35 (177)
.+..-.++++|+.|+|||||++.+.+-
T Consensus 114 i~~Ge~~~LiG~NGsGKSTLlkiL~Gl 140 (607)
T 3bk7_A 114 VKDGMVVGIVGPNGTGKTTAVKILAGQ 140 (607)
T ss_dssp CCTTSEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCCCCEEEEECCCCChHHHHHHHHhCC
Confidence 455667999999999999999999853
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* | Back alignment and structure |
|---|
Probab=96.69 E-value=0.00088 Score=57.45 Aligned_cols=32 Identities=22% Similarity=0.351 Sum_probs=28.3
Q ss_pred eeecccccceeEEEEEcCCCCCHHHHHHHHhc
Q 030429 3 LHISLFFKQEMELSLIGLQNAGKTSLVNTIAT 34 (177)
Q Consensus 3 ~~~~~~~~~~~~i~i~G~~~~GKSsli~~l~~ 34 (177)
...++..+..-.++++|+.|||||||++.+.+
T Consensus 407 ~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~g 438 (1284)
T 3g5u_A 407 KGLNLKVKSGQTVALVGNSGCGKSTTVQLMQR 438 (1284)
T ss_dssp EEEEEEECTTCEEEEECCSSSSHHHHHHHTTT
T ss_pred ecceEEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 45678888888999999999999999999973
|
| >2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=96.69 E-value=0.00094 Score=51.60 Aligned_cols=21 Identities=33% Similarity=0.510 Sum_probs=19.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 030429 14 ELSLIGLQNAGKTSLVNTIAT 34 (177)
Q Consensus 14 ~i~i~G~~~~GKSsli~~l~~ 34 (177)
.++++|++|+|||+|++.+.+
T Consensus 66 GvLL~GppGtGKTtLaraIa~ 86 (499)
T 2dhr_A 66 GVLLVGPPGVGKTHLARAVAG 86 (499)
T ss_dssp EEEEECSSSSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 399999999999999999984
|
| >2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=96.68 E-value=0.0011 Score=46.05 Aligned_cols=23 Identities=22% Similarity=0.218 Sum_probs=19.2
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHh
Q 030429 11 QEMELSLIGLQNAGKTSLVNTIA 33 (177)
Q Consensus 11 ~~~~i~i~G~~~~GKSsli~~l~ 33 (177)
..--++++|++|+|||||+.+++
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~~~ 44 (247)
T 2dr3_A 22 ERNVVLLSGGPGTGKTIFSQQFL 44 (247)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHH
Confidence 34467999999999999987775
|
| >1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A* | Back alignment and structure |
|---|
Probab=96.67 E-value=0.001 Score=48.39 Aligned_cols=23 Identities=22% Similarity=0.293 Sum_probs=20.3
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhc
Q 030429 12 EMELSLIGLQNAGKTSLVNTIAT 34 (177)
Q Consensus 12 ~~~i~i~G~~~~GKSsli~~l~~ 34 (177)
.-.+++.|++|+|||+|++.+.+
T Consensus 37 ~~~lll~G~~GtGKT~la~~i~~ 59 (324)
T 1l8q_A 37 YNPIFIYGSVGTGKTHLLQAAGN 59 (324)
T ss_dssp CSSEEEECSSSSSHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHH
Confidence 35689999999999999999974
|
| >1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A | Back alignment and structure |
|---|
Probab=96.65 E-value=0.0012 Score=43.92 Aligned_cols=21 Identities=14% Similarity=0.273 Sum_probs=19.0
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q 030429 15 LSLIGLQNAGKTSLVNTIATG 35 (177)
Q Consensus 15 i~i~G~~~~GKSsli~~l~~~ 35 (177)
++|+|.+|||||+|..++...
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~ 22 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD 22 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS
T ss_pred EEEECCCCCcHHHHHHHHHhc
Confidence 689999999999999999844
|
| >3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae} | Back alignment and structure |
|---|
Probab=96.64 E-value=0.00055 Score=43.74 Aligned_cols=24 Identities=13% Similarity=0.102 Sum_probs=20.9
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHh
Q 030429 10 KQEMELSLIGLQNAGKTSLVNTIA 33 (177)
Q Consensus 10 ~~~~~i~i~G~~~~GKSsli~~l~ 33 (177)
+....|++.|++|+|||++.+.+.
T Consensus 25 ~~~~~vll~G~~GtGKt~lA~~i~ 48 (143)
T 3co5_A 25 KRTSPVFLTGEAGSPFETVARYFH 48 (143)
T ss_dssp TCSSCEEEEEETTCCHHHHHGGGC
T ss_pred CCCCcEEEECCCCccHHHHHHHHH
Confidence 345679999999999999999986
|
| >2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=96.64 E-value=0.0016 Score=48.20 Aligned_cols=30 Identities=27% Similarity=0.300 Sum_probs=24.0
Q ss_pred eecccccceeEEEEEcCCCCCHHHHHHHHhc
Q 030429 4 HISLFFKQEMELSLIGLQNAGKTSLVNTIAT 34 (177)
Q Consensus 4 ~~~~~~~~~~~i~i~G~~~~GKSsli~~l~~ 34 (177)
..++..+.. -.+++|+.|+|||||++.+..
T Consensus 19 ~~~~~~~~g-~~~i~G~nG~GKttll~ai~~ 48 (359)
T 2o5v_A 19 PGTLNFPEG-VTGIYGENGAGKTNLLEAAYL 48 (359)
T ss_dssp SEEEECCSE-EEEEECCTTSSHHHHHHHHHH
T ss_pred eeEEEEcCC-eEEEECCCCCChhHHHHHHHH
Confidence 345556666 678999999999999999873
|
| >3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A* | Back alignment and structure |
|---|
Probab=96.63 E-value=0.0013 Score=49.63 Aligned_cols=25 Identities=16% Similarity=0.331 Sum_probs=21.4
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhc
Q 030429 10 KQEMELSLIGLQNAGKTSLVNTIAT 34 (177)
Q Consensus 10 ~~~~~i~i~G~~~~GKSsli~~l~~ 34 (177)
....-|+++|.+||||||+.+++..
T Consensus 256 ~~~~lIil~G~pGSGKSTla~~L~~ 280 (416)
T 3zvl_A 256 PNPEVVVAVGFPGAGKSTFIQEHLV 280 (416)
T ss_dssp SSCCEEEEESCTTSSHHHHHHHHTG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 3456789999999999999999974
|
| >3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus} | Back alignment and structure |
|---|
Probab=96.61 E-value=0.0008 Score=53.94 Aligned_cols=30 Identities=23% Similarity=0.419 Sum_probs=25.1
Q ss_pred eeecccccceeEEEEEcCCCCCHHHHHHHH
Q 030429 3 LHISLFFKQEMELSLIGLQNAGKTSLVNTI 32 (177)
Q Consensus 3 ~~~~~~~~~~~~i~i~G~~~~GKSsli~~l 32 (177)
...++..+..-.++|+|+.|||||||++.+
T Consensus 339 ~~vsl~I~~Ge~vaIiGpnGsGKSTLl~~i 368 (670)
T 3ux8_A 339 KNVSVKIPLGTFVAVTGVSGSGKSTLVNEV 368 (670)
T ss_dssp CSEEEEEETTSEEEEECSTTSSHHHHHTTT
T ss_pred ccceeEecCCCEEEEEeeCCCCHHHHHHHH
Confidence 346677778888999999999999999754
|
| >4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.61 E-value=0.0012 Score=49.97 Aligned_cols=25 Identities=32% Similarity=0.416 Sum_probs=21.2
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhc
Q 030429 10 KQEMELSLIGLQNAGKTSLVNTIAT 34 (177)
Q Consensus 10 ~~~~~i~i~G~~~~GKSsli~~l~~ 34 (177)
+.+--|++.|+||+|||+|++++.+
T Consensus 204 ~~prGiLL~GPPGtGKT~lakAiA~ 228 (428)
T 4b4t_K 204 DPPRGVLLYGPPGTGKTMLVKAVAN 228 (428)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHH
Confidence 3344699999999999999999983
|
| >4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.61 E-value=0.0012 Score=49.96 Aligned_cols=26 Identities=23% Similarity=0.281 Sum_probs=22.4
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHhc
Q 030429 9 FKQEMELSLIGLQNAGKTSLVNTIAT 34 (177)
Q Consensus 9 ~~~~~~i~i~G~~~~GKSsli~~l~~ 34 (177)
.+.+-.|++.||||+|||+|.+++.+
T Consensus 212 ~~~prGvLLyGPPGTGKTllAkAiA~ 237 (434)
T 4b4t_M 212 IRAPKGALMYGPPGTGKTLLARACAA 237 (434)
T ss_dssp CCCCCEEEEESCTTSSHHHHHHHHHH
T ss_pred CCCCCeeEEECcCCCCHHHHHHHHHH
Confidence 34456799999999999999999983
|
| >1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A | Back alignment and structure |
|---|
Probab=96.59 E-value=0.0018 Score=47.17 Aligned_cols=30 Identities=23% Similarity=0.340 Sum_probs=24.8
Q ss_pred eecccccceeEEEEEcCCCCCHHHHHHHHh
Q 030429 4 HISLFFKQEMELSLIGLQNAGKTSLVNTIA 33 (177)
Q Consensus 4 ~~~~~~~~~~~i~i~G~~~~GKSsli~~l~ 33 (177)
..++..+..-.|+++|++|+||||++..+.
T Consensus 97 ~l~~~~~~~~vI~ivG~~G~GKTT~~~~LA 126 (320)
T 1zu4_A 97 RIDFKENRLNIFMLVGVNGTGKTTSLAKMA 126 (320)
T ss_dssp CCCCCTTSCEEEEEESSTTSSHHHHHHHHH
T ss_pred CccccCCCCeEEEEECCCCCCHHHHHHHHH
Confidence 345555667789999999999999999887
|
| >1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11 | Back alignment and structure |
|---|
Probab=96.59 E-value=0.0012 Score=48.65 Aligned_cols=27 Identities=26% Similarity=0.334 Sum_probs=22.6
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHhcC
Q 030429 9 FKQEMELSLIGLQNAGKTSLVNTIATG 35 (177)
Q Consensus 9 ~~~~~~i~i~G~~~~GKSsli~~l~~~ 35 (177)
.+..--+.|+|++|+|||||+..++..
T Consensus 128 i~~G~i~~I~G~~GsGKTTL~~~l~~~ 154 (349)
T 1pzn_A 128 IETQAITEVFGEFGSGKTQLAHTLAVM 154 (349)
T ss_dssp EESSEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 445567899999999999999999843
|
| >2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=96.58 E-value=0.0016 Score=45.24 Aligned_cols=23 Identities=26% Similarity=0.395 Sum_probs=20.4
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhc
Q 030429 12 EMELSLIGLQNAGKTSLVNTIAT 34 (177)
Q Consensus 12 ~~~i~i~G~~~~GKSsli~~l~~ 34 (177)
...|++.|..||||||+++.+..
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~ 24 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTK 24 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHH
Confidence 45789999999999999999974
|
| >2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=96.58 E-value=0.0013 Score=44.92 Aligned_cols=23 Identities=26% Similarity=0.537 Sum_probs=20.3
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhc
Q 030429 12 EMELSLIGLQNAGKTSLVNTIAT 34 (177)
Q Consensus 12 ~~~i~i~G~~~~GKSsli~~l~~ 34 (177)
+..|+++|++||||||+.+.+..
T Consensus 3 ~~~i~i~G~~gsGkst~~~~l~~ 25 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKRVAS 25 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999998874
|
| >2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A* | Back alignment and structure |
|---|
Probab=96.58 E-value=0.0018 Score=43.75 Aligned_cols=26 Identities=12% Similarity=0.152 Sum_probs=21.9
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcC
Q 030429 10 KQEMELSLIGLQNAGKTSLVNTIATG 35 (177)
Q Consensus 10 ~~~~~i~i~G~~~~GKSsli~~l~~~ 35 (177)
.....|+|+|++|+|||||...|...
T Consensus 32 ~~g~~ilI~GpsGsGKStLA~~La~~ 57 (205)
T 2qmh_A 32 IYGLGVLITGDSGVGKSETALELVQR 57 (205)
T ss_dssp ETTEEEEEECCCTTTTHHHHHHHHTT
T ss_pred ECCEEEEEECCCCCCHHHHHHHHHHh
Confidence 34567999999999999999999843
|
| >1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A* | Back alignment and structure |
|---|
Probab=96.57 E-value=0.0013 Score=47.15 Aligned_cols=24 Identities=25% Similarity=0.447 Sum_probs=21.0
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhc
Q 030429 11 QEMELSLIGLQNAGKTSLVNTIAT 34 (177)
Q Consensus 11 ~~~~i~i~G~~~~GKSsli~~l~~ 34 (177)
....+++.|++|+|||++++.+..
T Consensus 49 ~~~~vll~G~~GtGKT~la~~la~ 72 (310)
T 1ofh_A 49 TPKNILMIGPTGVGKTEIARRLAK 72 (310)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHH
Confidence 356799999999999999999973
|
| >4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A* | Back alignment and structure |
|---|
Probab=96.57 E-value=0.003 Score=48.07 Aligned_cols=23 Identities=22% Similarity=0.356 Sum_probs=19.2
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHh
Q 030429 11 QEMELSLIGLQNAGKTSLVNTIA 33 (177)
Q Consensus 11 ~~~~i~i~G~~~~GKSsli~~l~ 33 (177)
.-.-|.|+|+.++|||+|+|.++
T Consensus 66 ~v~vvsv~G~~~~gks~l~N~ll 88 (457)
T 4ido_A 66 EVVAVSVAGAFRKGKSFLMDFML 88 (457)
T ss_dssp BEEEEEEEEBTTSSHHHHHHHHH
T ss_pred ceEEEEEECCCCCchhHHHHHHH
Confidence 44667799999999999999654
|
| >1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ... | Back alignment and structure |
|---|
Probab=96.56 E-value=0.00092 Score=47.18 Aligned_cols=26 Identities=27% Similarity=0.337 Sum_probs=21.6
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHhc
Q 030429 9 FKQEMELSLIGLQNAGKTSLVNTIAT 34 (177)
Q Consensus 9 ~~~~~~i~i~G~~~~GKSsli~~l~~ 34 (177)
.++...|+|.|..||||||+++.|..
T Consensus 21 ~~~~~~I~ieG~~GsGKST~~~~L~~ 46 (263)
T 1p5z_B 21 GTRIKKISIEGNIAAGKSTFVNILKQ 46 (263)
T ss_dssp --CCEEEEEECSTTSSHHHHHTTTGG
T ss_pred ccCceEEEEECCCCCCHHHHHHHHHH
Confidence 34567899999999999999999873
|
| >1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6 | Back alignment and structure |
|---|
Probab=96.55 E-value=0.00075 Score=48.49 Aligned_cols=24 Identities=21% Similarity=0.344 Sum_probs=17.8
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhc
Q 030429 11 QEMELSLIGLQNAGKTSLVNTIAT 34 (177)
Q Consensus 11 ~~~~i~i~G~~~~GKSsli~~l~~ 34 (177)
+...|+|.|++||||||+.+.|..
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~ 27 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQ 27 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 345799999999999999998863
|
| >1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.55 E-value=0.0014 Score=47.84 Aligned_cols=23 Identities=30% Similarity=0.391 Sum_probs=20.7
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhc
Q 030429 12 EMELSLIGLQNAGKTSLVNTIAT 34 (177)
Q Consensus 12 ~~~i~i~G~~~~GKSsli~~l~~ 34 (177)
.-.|++.|+||+|||+|++.+..
T Consensus 45 ~~~iLL~GppGtGKT~la~ala~ 67 (322)
T 1xwi_A 45 WRGILLFGPPGTGKSYLAKAVAT 67 (322)
T ss_dssp CSEEEEESSSSSCHHHHHHHHHH
T ss_pred CceEEEECCCCccHHHHHHHHHH
Confidence 35799999999999999999984
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.54 E-value=0.0017 Score=51.39 Aligned_cols=22 Identities=32% Similarity=0.548 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 030429 14 ELSLIGLQNAGKTSLVNTIATG 35 (177)
Q Consensus 14 ~i~i~G~~~~GKSsli~~l~~~ 35 (177)
.++++|+.|||||||++.+.+-
T Consensus 380 iv~iiG~NGsGKSTLlk~l~Gl 401 (608)
T 3j16_B 380 ILVMMGENGTGKTTLIKLLAGA 401 (608)
T ss_dssp EEEEESCTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCcHHHHHHHHhcC
Confidence 5899999999999999999854
|
| >2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=96.54 E-value=0.0015 Score=48.25 Aligned_cols=25 Identities=24% Similarity=0.470 Sum_probs=21.5
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhc
Q 030429 10 KQEMELSLIGLQNAGKTSLVNTIAT 34 (177)
Q Consensus 10 ~~~~~i~i~G~~~~GKSsli~~l~~ 34 (177)
...-.+++.|++|+|||||++.+.+
T Consensus 43 ~~~~~vli~G~~G~GKTtl~~~l~~ 67 (386)
T 2qby_A 43 EKPNNIFIYGLTGTGKTAVVKFVLS 67 (386)
T ss_dssp CCCCCEEEEECTTSSHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHH
Confidence 3455799999999999999999974
|
| >3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A* | Back alignment and structure |
|---|
Probab=96.53 E-value=0.0016 Score=44.20 Aligned_cols=23 Identities=35% Similarity=0.642 Sum_probs=18.6
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHh
Q 030429 10 KQEMELSLIGLQNAGKTSLVNTIA 33 (177)
Q Consensus 10 ~~~~~i~i~G~~~~GKSsli~~l~ 33 (177)
...++ +|+|+.|+||||++.++.
T Consensus 22 ~~~~~-~I~G~NgsGKStil~ai~ 44 (203)
T 3qks_A 22 KEGIN-LIIGQNGSGKSSLLDAIL 44 (203)
T ss_dssp CSEEE-EEECCTTSSHHHHHHHHH
T ss_pred CCCeE-EEEcCCCCCHHHHHHHHH
Confidence 34444 778999999999999885
|
| >2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A* | Back alignment and structure |
|---|
Probab=96.53 E-value=0.0021 Score=47.44 Aligned_cols=23 Identities=17% Similarity=0.436 Sum_probs=20.1
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHh
Q 030429 11 QEMELSLIGLQNAGKTSLVNTIA 33 (177)
Q Consensus 11 ~~~~i~i~G~~~~GKSsli~~l~ 33 (177)
+..+|+++|++|+||||+.+.+.
T Consensus 23 ~~~~i~l~G~~G~GKTTl~~~la 45 (359)
T 2ga8_A 23 YRVCVILVGSPGSGKSTIAEELC 45 (359)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHH
T ss_pred CeeEEEEECCCCCcHHHHHHHHH
Confidence 34679999999999999998776
|
| >3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans} | Back alignment and structure |
|---|
Probab=96.52 E-value=0.0011 Score=51.85 Aligned_cols=26 Identities=31% Similarity=0.511 Sum_probs=22.7
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHhc
Q 030429 9 FKQEMELSLIGLQNAGKTSLVNTIAT 34 (177)
Q Consensus 9 ~~~~~~i~i~G~~~~GKSsli~~l~~ 34 (177)
.++...|+++|++|||||||++.+.+
T Consensus 366 ~~~G~iI~LiG~sGSGKSTLar~La~ 391 (552)
T 3cr8_A 366 ERQGFTVFFTGLSGAGKSTLARALAA 391 (552)
T ss_dssp GGSCEEEEEEESSCHHHHHHHHHHHH
T ss_pred cccceEEEEECCCCChHHHHHHHHHH
Confidence 45667899999999999999999974
|
| >2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A* | Back alignment and structure |
|---|
Probab=96.51 E-value=0.0017 Score=46.78 Aligned_cols=23 Identities=30% Similarity=0.446 Sum_probs=20.4
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHh
Q 030429 11 QEMELSLIGLQNAGKTSLVNTIA 33 (177)
Q Consensus 11 ~~~~i~i~G~~~~GKSsli~~l~ 33 (177)
..-.++++|++|+||||++..+.
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA 126 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLA 126 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHH
Confidence 45689999999999999999986
|
| >1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20 | Back alignment and structure |
|---|
Probab=96.51 E-value=0.0017 Score=48.15 Aligned_cols=21 Identities=24% Similarity=0.382 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 030429 14 ELSLIGLQNAGKTSLVNTIAT 34 (177)
Q Consensus 14 ~i~i~G~~~~GKSsli~~l~~ 34 (177)
.++|.|++|+|||||++.+.+
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~ 66 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWE 66 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 799999999999999999974
|
| >3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C | Back alignment and structure |
|---|
Probab=96.51 E-value=0.0016 Score=47.34 Aligned_cols=23 Identities=30% Similarity=0.432 Sum_probs=20.7
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhc
Q 030429 12 EMELSLIGLQNAGKTSLVNTIAT 34 (177)
Q Consensus 12 ~~~i~i~G~~~~GKSsli~~l~~ 34 (177)
...+++.|+||+|||+|++.+..
T Consensus 51 ~~~vLl~GppGtGKT~la~aia~ 73 (322)
T 3eie_A 51 TSGILLYGPPGTGKSYLAKAVAT 73 (322)
T ss_dssp CCEEEEECSSSSCHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHH
Confidence 45799999999999999999974
|
| >3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A | Back alignment and structure |
|---|
Probab=96.51 E-value=0.0018 Score=47.22 Aligned_cols=22 Identities=36% Similarity=0.471 Sum_probs=19.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHhc
Q 030429 13 MELSLIGLQNAGKTSLVNTIAT 34 (177)
Q Consensus 13 ~~i~i~G~~~~GKSsli~~l~~ 34 (177)
..|+|+|++|||||||...+..
T Consensus 6 ~~i~i~GptGsGKTtla~~La~ 27 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALAD 27 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999999873
|
| >1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=96.50 E-value=0.0011 Score=48.57 Aligned_cols=21 Identities=24% Similarity=0.330 Sum_probs=19.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 030429 14 ELSLIGLQNAGKTSLVNTIAT 34 (177)
Q Consensus 14 ~i~i~G~~~~GKSsli~~l~~ 34 (177)
.+++.|++|+||||+++.+.+
T Consensus 38 ~~ll~Gp~G~GKTtl~~~la~ 58 (354)
T 1sxj_E 38 HLLLYGPNGTGKKTRCMALLE 58 (354)
T ss_dssp CEEEECSTTSSHHHHHHTHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 399999999999999999875
|
| >4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A* | Back alignment and structure |
|---|
Probab=96.50 E-value=0.0017 Score=46.70 Aligned_cols=22 Identities=32% Similarity=0.484 Sum_probs=19.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHhc
Q 030429 13 MELSLIGLQNAGKTSLVNTIAT 34 (177)
Q Consensus 13 ~~i~i~G~~~~GKSsli~~l~~ 34 (177)
-.+++.|++|+|||++++.+..
T Consensus 48 ~~~ll~G~~GtGKt~la~~la~ 69 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTLAA 69 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 4799999999999999999874
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* | Back alignment and structure |
|---|
Probab=96.50 E-value=0.0015 Score=56.14 Aligned_cols=32 Identities=28% Similarity=0.447 Sum_probs=28.1
Q ss_pred eeecccccceeEEEEEcCCCCCHHHHHHHHhc
Q 030429 3 LHISLFFKQEMELSLIGLQNAGKTSLVNTIAT 34 (177)
Q Consensus 3 ~~~~~~~~~~~~i~i~G~~~~GKSsli~~l~~ 34 (177)
...++..+..-+++++|+.|||||||++.+.+
T Consensus 1050 ~~vsl~i~~Ge~v~ivG~sGsGKSTl~~~l~g 1081 (1284)
T 3g5u_A 1050 QGLSLEVKKGQTLALVGSSGCGKSTVVQLLER 1081 (1284)
T ss_dssp SSCCEEECSSSEEEEECSSSTTHHHHHHHHTT
T ss_pred cceeEEEcCCCEEEEECCCCCCHHHHHHHHhc
Confidence 45677788888999999999999999999984
|
| >4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.48 E-value=0.0015 Score=48.96 Aligned_cols=26 Identities=31% Similarity=0.378 Sum_probs=22.1
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHhc
Q 030429 9 FKQEMELSLIGLQNAGKTSLVNTIAT 34 (177)
Q Consensus 9 ~~~~~~i~i~G~~~~GKSsli~~l~~ 34 (177)
.+.+--|++.||||+|||+|.+++.+
T Consensus 179 i~~prGvLL~GPPGTGKTllAkAiA~ 204 (405)
T 4b4t_J 179 IAQPKGVILYGPPGTGKTLLARAVAH 204 (405)
T ss_dssp CCCCCCEEEESCSSSSHHHHHHHHHH
T ss_pred CCCCCceEEeCCCCCCHHHHHHHHHH
Confidence 34456799999999999999999983
|
| >3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228} | Back alignment and structure |
|---|
Probab=96.48 E-value=0.0017 Score=47.66 Aligned_cols=22 Identities=27% Similarity=0.453 Sum_probs=19.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHhc
Q 030429 13 MELSLIGLQNAGKTSLVNTIAT 34 (177)
Q Consensus 13 ~~i~i~G~~~~GKSsli~~l~~ 34 (177)
.-|+|+|++|||||||...+..
T Consensus 8 ~lI~I~GptgSGKTtla~~La~ 29 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAK 29 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEECCCcCcHHHHHHHHHH
Confidence 4689999999999999999873
|
| >4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.47 E-value=0.0017 Score=49.28 Aligned_cols=26 Identities=31% Similarity=0.401 Sum_probs=22.3
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHhc
Q 030429 9 FKQEMELSLIGLQNAGKTSLVNTIAT 34 (177)
Q Consensus 9 ~~~~~~i~i~G~~~~GKSsli~~l~~ 34 (177)
.+.+--|++.||||+|||+|.+++.+
T Consensus 212 ~~~prGvLL~GPPGtGKTllAkAiA~ 237 (437)
T 4b4t_L 212 IKPPKGVLLYGPPGTGKTLLAKAVAA 237 (437)
T ss_dssp CCCCCEEEEESCTTSSHHHHHHHHHH
T ss_pred CCCCCeEEEECCCCCcHHHHHHHHHH
Confidence 34456899999999999999999983
|
| >1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=96.45 E-value=0.0017 Score=47.57 Aligned_cols=21 Identities=33% Similarity=0.452 Sum_probs=19.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 030429 14 ELSLIGLQNAGKTSLVNTIAT 34 (177)
Q Consensus 14 ~i~i~G~~~~GKSsli~~l~~ 34 (177)
.+++.|++|+||||+++.+.+
T Consensus 48 ~~ll~Gp~G~GKTtla~~la~ 68 (340)
T 1sxj_C 48 HLLFYGPPGTGKTSTIVALAR 68 (340)
T ss_dssp CEEEECSSSSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 489999999999999999974
|
| >2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E* | Back alignment and structure |
|---|
Probab=96.45 E-value=0.0016 Score=50.07 Aligned_cols=22 Identities=32% Similarity=0.460 Sum_probs=19.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHhc
Q 030429 13 MELSLIGLQNAGKTSLVNTIAT 34 (177)
Q Consensus 13 ~~i~i~G~~~~GKSsli~~l~~ 34 (177)
-.|+++|+||+|||+|++.+.+
T Consensus 50 ~gvLL~GppGtGKT~Laraia~ 71 (476)
T 2ce7_A 50 KGILLVGPPGTGKTLLARAVAG 71 (476)
T ss_dssp SEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 3499999999999999999984
|
| >2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A* | Back alignment and structure |
|---|
Probab=96.41 E-value=0.00079 Score=47.52 Aligned_cols=22 Identities=32% Similarity=0.453 Sum_probs=19.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHhc
Q 030429 13 MELSLIGLQNAGKTSLVNTIAT 34 (177)
Q Consensus 13 ~~i~i~G~~~~GKSsli~~l~~ 34 (177)
-.+++.|++|+|||+|++.+..
T Consensus 45 ~~vll~G~~GtGKT~la~~la~ 66 (268)
T 2r62_A 45 KGVLLVGPPGTGKTLLAKAVAG 66 (268)
T ss_dssp SCCCCBCSSCSSHHHHHHHHHH
T ss_pred ceEEEECCCCCcHHHHHHHHHH
Confidence 3489999999999999999974
|
| >3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus} | Back alignment and structure |
|---|
Probab=96.41 E-value=0.0015 Score=52.43 Aligned_cols=27 Identities=30% Similarity=0.402 Sum_probs=23.8
Q ss_pred eeecccccceeEEEEEcCCCCCHHHHH
Q 030429 3 LHISLFFKQEMELSLIGLQNAGKTSLV 29 (177)
Q Consensus 3 ~~~~~~~~~~~~i~i~G~~~~GKSsli 29 (177)
...++..+..-.++++|+.|||||||+
T Consensus 35 ~~vsl~i~~Ge~~~liGpNGaGKSTLl 61 (670)
T 3ux8_A 35 KNIDVEIPRGKLVVLTGLSGSGKSSLA 61 (670)
T ss_dssp CSEEEEEETTSEEEEECSTTSSHHHHH
T ss_pred eccEEEECCCCEEEEECCCCCCHHHHh
Confidence 356788888889999999999999996
|
| >2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=96.40 E-value=0.0017 Score=47.97 Aligned_cols=25 Identities=24% Similarity=0.392 Sum_probs=21.7
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhc
Q 030429 10 KQEMELSLIGLQNAGKTSLVNTIAT 34 (177)
Q Consensus 10 ~~~~~i~i~G~~~~GKSsli~~l~~ 34 (177)
...-.+++.|++|+||||+++.+..
T Consensus 42 ~~~~~vll~G~~G~GKT~l~~~~~~ 66 (387)
T 2v1u_A 42 EKPSNALLYGLTGTGKTAVARLVLR 66 (387)
T ss_dssp CCCCCEEECBCTTSSHHHHHHHHHH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHH
Confidence 4556899999999999999999973
|
| >3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A* | Back alignment and structure |
|---|
Probab=96.40 E-value=0.0019 Score=48.55 Aligned_cols=23 Identities=30% Similarity=0.371 Sum_probs=19.4
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHh
Q 030429 11 QEMELSLIGLQNAGKTSLVNTIA 33 (177)
Q Consensus 11 ~~~~i~i~G~~~~GKSsli~~l~ 33 (177)
..--++|+|++|+|||||+..++
T Consensus 177 ~Gei~~I~G~sGsGKTTLl~~la 199 (400)
T 3lda_A 177 TGSITELFGEFRTGKSQLCHTLA 199 (400)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHH
T ss_pred CCcEEEEEcCCCCChHHHHHHHH
Confidence 33458999999999999999775
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 177 | ||||
| d1e0sa_ | 173 | c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo | 1e-30 | |
| d1moza_ | 182 | c.37.1.8 (A:) ADP-ribosylation factor {Baker's yea | 3e-28 | |
| d1zd9a1 | 164 | c.37.1.8 (A:18-181) ADP-ribosylation factor {Human | 4e-28 | |
| d1zj6a1 | 177 | c.37.1.8 (A:2-178) ADP-ribosylation factor {Human | 2e-27 | |
| d1fzqa_ | 176 | c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus | 5e-26 | |
| d2fu5c1 | 173 | c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [Ta | 1e-25 | |
| d1ksha_ | 165 | c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus | 1e-24 | |
| d1r8sa_ | 160 | c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo | 3e-24 | |
| d1g16a_ | 166 | c.37.1.8 (A:) Rab-related protein Sec4 {Baker's ye | 4e-24 | |
| d2qtvb1 | 166 | c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharom | 1e-23 | |
| d1f6ba_ | 186 | c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus gr | 3e-22 | |
| d2bcgy1 | 194 | c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Sac | 8e-22 | |
| d1x3sa1 | 177 | c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [Ta | 1e-21 | |
| d2ew1a1 | 171 | c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [Ta | 2e-20 | |
| d3raba_ | 169 | c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxI | 4e-20 | |
| d2f9la1 | 175 | c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [T | 5e-20 | |
| d1azta2 | 221 | c.37.1.8 (A:35-65,A:202-391) Transducin (alpha sub | 3e-19 | |
| d2g6ba1 | 170 | c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [T | 4e-19 | |
| d2f7sa1 | 186 | c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [T | 1e-18 | |
| d1upta_ | 169 | c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo | 2e-18 | |
| d1z0fa1 | 166 | c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [Ta | 4e-18 | |
| d1kaoa_ | 167 | c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: | 4e-17 | |
| d2a5ja1 | 173 | c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [Ta | 6e-17 | |
| d2bcjq2 | 200 | c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha sub | 8e-17 | |
| d1svsa1 | 195 | c.37.1.8 (A:32-60,A:182-347) Transducin (alpha sub | 1e-16 | |
| d2bmea1 | 174 | c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [Ta | 2e-16 | |
| d1ek0a_ | 170 | c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces | 3e-16 | |
| d1wmsa_ | 174 | c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: | 1e-15 | |
| d1zcba2 | 200 | c.37.1.8 (A:47-75,A:202-372) Transducin (alpha sub | 3e-15 | |
| d1r2qa_ | 170 | c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: | 4e-15 | |
| d1yzqa1 | 164 | c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [Ta | 4e-15 | |
| d2fh5b1 | 207 | c.37.1.8 (B:63-269) Signal recognition particle re | 2e-14 | |
| d1u8za_ | 168 | c.37.1.8 (A:) Ras-related protein RalA {Cotton-top | 5e-14 | |
| d1ky3a_ | 175 | c.37.1.8 (A:) Rab-related protein ypt7p {Baker's y | 3e-13 | |
| d1ctqa_ | 166 | c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapi | 4e-13 | |
| d1vg8a_ | 184 | c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId | 5e-13 | |
| d1mh1a_ | 183 | c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 96 | 1e-12 | |
| d1z08a1 | 167 | c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [T | 1e-12 | |
| d1c1ya_ | 167 | c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: | 2e-12 | |
| d1nrjb_ | 209 | c.37.1.8 (B:) Signal recognition particle receptor | 5e-12 | |
| d2atxa1 | 185 | c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [Tax | 9e-12 | |
| d2fn4a1 | 173 | c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [T | 1e-11 | |
| d2ngra_ | 191 | c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: | 1e-11 | |
| d2erya1 | 171 | c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [ | 2e-11 | |
| d1z06a1 | 165 | c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) | 1e-10 | |
| d1i2ma_ | 170 | c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 96 | 2e-10 | |
| d1kmqa_ | 177 | c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9 | 4e-10 | |
| d1z2aa1 | 164 | c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [Ta | 5e-10 | |
| d2erxa1 | 171 | c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [ | 8e-10 | |
| d1z0ja1 | 167 | c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [ | 1e-09 | |
| d1x1ra1 | 169 | c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRa | 6e-09 | |
| d2bmja1 | 175 | c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {H | 1e-08 | |
| d1udxa2 | 180 | c.37.1.8 (A:157-336) Obg GTP-binding protein middl | 1e-07 | |
| d2atva1 | 168 | c.37.1.8 (A:5-172) Ras-like estrogen-regulated gro | 1e-07 | |
| d1m7ba_ | 179 | c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [T | 2e-07 | |
| d1xtqa1 | 167 | c.37.1.8 (A:3-169) GTP-binding protein RheB {Human | 1e-06 | |
| d2cxxa1 | 184 | c.37.1.8 (A:2-185) GTP-binding protein engB {Pyroc | 2e-06 | |
| d1egaa1 | 179 | c.37.1.8 (A:4-182) GTPase Era, N-terminal domain { | 3e-06 | |
| d2g3ya1 | 172 | c.37.1.8 (A:73-244) GTP-binding protein GEM {Human | 2e-05 | |
| d1svia_ | 195 | c.37.1.8 (A:) Probable GTPase EngB {Bacillus subti | 3e-05 | |
| d1tq4a_ | 400 | c.37.1.8 (A:) Interferon-inducible GTPase {Mouse ( | 8e-05 | |
| d2gjsa1 | 168 | c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [Tax | 9e-05 | |
| d1mkya1 | 171 | c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal | 1e-04 | |
| d1wf3a1 | 178 | c.37.1.8 (A:3-180) GTPase Era, N-terminal domain { | 1e-04 | |
| d1xzpa2 | 160 | c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotog | 2e-04 | |
| d1lnza2 | 185 | c.37.1.8 (A:158-342) Obg GTP-binding protein middl | 4e-04 | |
| d2gj8a1 | 161 | c.37.1.8 (A:216-376) Probable tRNA modification GT | 0.001 | |
| d1d2ea3 | 196 | c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), | 0.002 | |
| d1puia_ | 188 | c.37.1.8 (A:) Probable GTPase EngB {Escherichia co | 0.002 |
| >d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]} Length = 173 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF6 [TaxId: 9606]
Score = 107 bits (268), Expect = 1e-30
Identities = 57/169 (33%), Positives = 88/169 (52%), Gaps = 1/169 (0%)
Query: 6 SLFFKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLG 65
+F +EM + ++GL AGKT+++ + G S IPTVGFN+ VT NV +WD+G
Sbjct: 6 KIFGNKEMRILMLGLDAAGKTTILYKL-KLGQSVTTIPTVGFNVETVTYKNVKFNVWDVG 64
Query: 66 GQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKID 125
GQ + R +W Y G +++VVD ADRD + AR ELH ++ + +L+ NK D
Sbjct: 65 GQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQD 124
Query: 126 KSEALSKQALVDQLGLESITDREVCCYMISCKDSINIDAVIDWLIKHSK 174
+A+ + ++LGL I DR + + WL + K
Sbjct: 125 LPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLTSNYK 173
|
| >d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]} Length = 182 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]
Score = 101 bits (252), Expect = 3e-28
Identities = 55/165 (33%), Positives = 85/165 (51%), Gaps = 1/165 (0%)
Query: 10 KQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQRR 69
+E+ + ++GL AGKT+++ + G PT+GFN+ ++ N+ + +WDLGGQ
Sbjct: 15 NKELRILILGLDGAGKTTILYRL-QIGEVVTTKPTIGFNVETLSYKNLKLNVWDLGGQTS 73
Query: 70 FRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEA 129
R W Y +A+++VVD+ D+D + A ELH +L + L LLV NK D+ A
Sbjct: 74 IRPYWRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPGA 133
Query: 130 LSKQALVDQLGLESITDREVCCYMISCKDSINIDAVIDWLIKHSK 174
LS + +L L + DR S I +DWLI K
Sbjct: 134 LSASEVSKELNLVELKDRSWSIVASSAIKGEGITEGLDWLIDVIK 178
|
| >d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} Length = 164 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL8A [TaxId: 9606]
Score = 100 bits (250), Expect = 4e-28
Identities = 106/164 (64%), Positives = 137/164 (83%)
Query: 11 QEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRF 70
+EMEL+L+GLQ +GKT+ VN IA+G ++EDMIPTVGFNMRK+TKGNVTIKLWD+GGQ RF
Sbjct: 1 EEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRKITKGNVTIKLWDIGGQPRF 60
Query: 71 RTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEAL 130
R+MWERYCRGVSAI+Y+VDAAD++ + +++ELH LL KP L GIP+LVLGNK D AL
Sbjct: 61 RSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGAL 120
Query: 131 SKQALVDQLGLESITDREVCCYMISCKDSINIDAVIDWLIKHSK 174
++ L++++ L +I DRE+CCY ISCK+ NID + WLI+HSK
Sbjct: 121 DEKELIEKMNLSAIQDREICCYSISCKEKDNIDITLQWLIQHSK 164
|
| >d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} Length = 177 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL5A [TaxId: 9606]
Score = 99.7 bits (247), Expect = 2e-27
Identities = 47/169 (27%), Positives = 81/169 (47%), Gaps = 1/169 (0%)
Query: 6 SLFFKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLG 65
LF QE ++ ++GL NAGKT+++ + PT+G N+ ++ N +WD+G
Sbjct: 9 RLFNHQEHKVIIVGLDNAGKTTILYQFSMNEVVHT-SPTIGSNVEEIVINNTRFLMWDIG 67
Query: 66 GQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKID 125
GQ R+ W Y ++ VVD+ DR+ + + R EL+++L L LL+ NK D
Sbjct: 68 GQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQD 127
Query: 126 KSEALSKQALVDQLGLESITDREVCCYMISCKDSINIDAVIDWLIKHSK 174
E ++ + L L SI D + + ++W++ K
Sbjct: 128 VKECMTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWMMSRLK 176
|
| >d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} Length = 176 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL3 [TaxId: 10090]
Score = 95.8 bits (237), Expect = 5e-26
Identities = 53/163 (32%), Positives = 82/163 (50%), Gaps = 1/163 (0%)
Query: 10 KQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQRR 69
QE+ + L+GL NAGKT+L+ + + PT GFN++ V + +WD+GGQR+
Sbjct: 14 DQEVRILLLGLDNAGKTTLLKQL-ASEDISHITPTQGFNIKSVQSQGFKLNVWDIGGQRK 72
Query: 70 FRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEA 129
R W Y ++YV+D+ADR EL ELL + LS +P+L+ NK D A
Sbjct: 73 IRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTA 132
Query: 130 LSKQALVDQLGLESITDREVCCYMISCKDSINIDAVIDWLIKH 172
+ + L L +I DR S + ++W+ K+
Sbjct: 133 APASEIAEGLNLHTIRDRVWQIQSCSALTGEGVQDGMNWVCKN 175
|
| >d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} Length = 173 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab8a species: Mouse (Mus musculus) [TaxId: 10090]
Score = 94.8 bits (235), Expect = 1e-25
Identities = 34/162 (20%), Positives = 66/162 (40%), Gaps = 8/162 (4%)
Query: 17 LIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMR----KVTKGNVTIKLWDLGGQRRFRT 72
LIG GKT ++ + ++ I T+G + + ++ + +++WD GQ RFRT
Sbjct: 11 LIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRT 70
Query: 73 MWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSK 132
+ Y RG I+ V D + S R+ + + S +++ +
Sbjct: 71 ITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDKRQVS 130
Query: 133 QALVDQLGLESITDREVCCYMISCKDSINIDAVIDWLIKHSK 174
+ + G + D + S K +IN++ L + K
Sbjct: 131 K----ERGEKLALDYGIKFMETSAKANINVENAFFTLARDIK 168
|
| >d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} Length = 165 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL2 [TaxId: 10090]
Score = 92.0 bits (227), Expect = 1e-24
Identities = 53/163 (32%), Positives = 86/163 (52%), Gaps = 1/163 (0%)
Query: 12 EMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRFR 71
E+ L ++GL NAGKT+++ G + + PT+GFN++ + + +WD+GGQ+ R
Sbjct: 2 ELRLLMLGLDNAGKTTILKKF-NGEDVDTISPTLGFNIKTLEHRGFKLNIWDVGGQKSLR 60
Query: 72 TMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALS 131
+ W Y +++VVD+ADR + + EL LL++ L+G LL+ NK D ALS
Sbjct: 61 SYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGALS 120
Query: 132 KQALVDQLGLESITDREVCCYMISCKDSINIDAVIDWLIKHSK 174
A+ + L L+SI S ++ IDWL+
Sbjct: 121 CNAIQEALELDSIRSHHWRIQGCSAVTGEDLLPGIDWLLDDIS 163
|
| >d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} Length = 160 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF1 [TaxId: 9606]
Score = 90.9 bits (224), Expect = 3e-24
Identities = 52/160 (32%), Positives = 82/160 (51%), Gaps = 1/160 (0%)
Query: 13 MELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRT 72
M + ++GL AGKT+++ + G IPT+GFN+ V N++ +WD+GGQ + R
Sbjct: 1 MRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVETVEYKNISFTVWDVGGQDKIRP 59
Query: 73 MWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSK 132
+W Y + +++VVD+ DR+ V AR EL +L + L LLV NK D A++
Sbjct: 60 LWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNA 119
Query: 133 QALVDQLGLESITDREVCCYMISCKDSINIDAVIDWLIKH 172
+ D+LGL S+ R + +DWL
Sbjct: 120 AEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQ 159
|
| >d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 166 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein Sec4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 90.6 bits (224), Expect = 4e-24
Identities = 38/163 (23%), Positives = 70/163 (42%), Gaps = 9/163 (5%)
Query: 13 MELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMR----KVTKGNVTIKLWDLGGQR 68
M++ LIG GK+ L+ ++ I T+G + + + V +++WD GQ
Sbjct: 3 MKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQE 62
Query: 69 RFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSE 128
RFRT+ Y RG I+ V D D + + + + + + LL++GNK D
Sbjct: 63 RFRTITTAYYRGAMGIILVYDITDERT-FTNIKQWFKTVNEHANDEAQLLLVGNKSD--- 118
Query: 129 ALSKQALVDQLGLESITDREVCCYMISCKDSINIDAVIDWLIK 171
+ + + G + + S K+ N++ + L K
Sbjct: 119 -METRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAK 160
|
| >d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 166 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 89.4 bits (220), Expect = 1e-23
Identities = 52/163 (31%), Positives = 79/163 (48%), Gaps = 8/163 (4%)
Query: 17 LIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTMWER 76
+GL NAGKT+L++ + + PT ++ GN+ +DLGG + R +W+
Sbjct: 5 FLGLDNAGKTTLLHML-KNDRLATLQPTWHPTSEELAIGNIKFTTFDLGGHIQARRLWKD 63
Query: 77 YCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALV 136
Y V+ I+++VDAAD + AR EL L L +P ++LGNKID A+S+ L
Sbjct: 64 YFPEVNGIVFLVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPNAVSEAELR 123
Query: 137 DQLGLESIT-------DREVCCYMISCKDSINIDAVIDWLIKH 172
LGL + T R V +M S WL ++
Sbjct: 124 SALGLLNTTGSQRIEGQRPVEVFMCSVVMRNGYLEAFQWLSQY 166
|
| >d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} Length = 186 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Score = 86.3 bits (212), Expect = 3e-22
Identities = 48/177 (27%), Positives = 91/177 (51%), Gaps = 13/177 (7%)
Query: 8 FFKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQ 67
+K+ +L +GL NAGKT+L++ + +PT+ ++T +T +DLGG
Sbjct: 9 LYKKTGKLVFLGLDNAGKTTLLHML-KDDRLGQHVPTLHPTSEELTIAGMTFTTFDLGGH 67
Query: 68 RRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKS 127
+ R +W+ Y ++ I+++VD AD + + ++ EL L+ +++ +P+L+LGNKID+
Sbjct: 68 IQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRP 127
Query: 128 EALSKQALVDQLGLESIT------------DREVCCYMISCKDSINIDAVIDWLIKH 172
EA+S++ L + GL T R + +M S W+ ++
Sbjct: 128 EAISEERLREMFGLYGQTTGKGSVSLKELNARPLEVFMCSVLKRQGYGEGFRWMAQY 184
|
| >d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 194 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Ytp1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 85.3 bits (210), Expect = 8e-22
Identities = 39/159 (24%), Positives = 71/159 (44%), Gaps = 8/159 (5%)
Query: 17 LIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMR----KVTKGNVTIKLWDLGGQRRFRT 72
LIG GK+ L+ + Y+ D I T+G + + ++ V +++WD GQ RFRT
Sbjct: 11 LIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRT 70
Query: 73 MWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSK 132
+ Y RG I+ V D D++S + + + + S + L++GNK D +
Sbjct: 71 ITSSYYRGSHGIIIVYDVTDQES-FNGVKMWLQEIDRYATSTVLKLLVGNKCDLKDKRVV 129
Query: 133 QALVDQLGLESITDREVCCYMISCKDSINIDAVIDWLIK 171
+ + E ++ S DS N++ + +
Sbjct: 130 EY---DVAKEFADANKMPFLETSALDSTNVEDAFLTMAR 165
|
| >d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} Length = 177 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab18 species: Human (Homo sapiens) [TaxId: 9606]
Score = 84.5 bits (208), Expect = 1e-21
Identities = 39/164 (23%), Positives = 72/164 (43%), Gaps = 8/164 (4%)
Query: 12 EMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMR----KVTKGNVTIKLWDLGGQ 67
+++ +IG GK+SL+ + ++ T+G + + V + +WD GQ
Sbjct: 7 TLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQ 66
Query: 68 RRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKS 127
RFRT+ Y RG ++ V D RD+ + L+EL + + I +++GNKIDK
Sbjct: 67 ERFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDK- 125
Query: 128 EALSKQALVDQLGLESITDREVCCYMISCKDSINIDAVIDWLIK 171
+ + GL+ + S K + + L++
Sbjct: 126 ---ENREVDRNEGLKFARKHSMLFIEASAKTCDGVQCAFEELVE 166
|
| >d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} Length = 171 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab30 species: Human (Homo sapiens) [TaxId: 9606]
Score = 81.4 bits (200), Expect = 2e-20
Identities = 38/159 (23%), Positives = 62/159 (38%), Gaps = 8/159 (5%)
Query: 17 LIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMR----KVTKGNVTIKLWDLGGQRRFRT 72
LIG GKT LV G + T+G + ++ V +++WD GQ RFR+
Sbjct: 10 LIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRS 69
Query: 73 MWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSK 132
+ + Y R +A++ D +S L E+ S I +LV
Sbjct: 70 ITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLAERREVS 129
Query: 133 QALVDQLGLESITDREVCCYMISCKDSINIDAVIDWLIK 171
Q Q E +++ S K+S N++ + L
Sbjct: 130 Q----QRAEEFSEAQDMYYLETSAKESDNVEKLFLDLAC 164
|
| >d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 169 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab3a species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 80.3 bits (197), Expect = 4e-20
Identities = 30/159 (18%), Positives = 64/159 (40%), Gaps = 8/159 (5%)
Query: 17 LIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMR----KVTKGNVTIKLWDLGGQRRFRT 72
+IG + GKTS + A ++ + TVG + + + +++WD GQ R+RT
Sbjct: 10 IIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGQERYRT 69
Query: 73 MWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSK 132
+ Y RG + + D + +S + + + + +K + +
Sbjct: 70 ITTAYYRGAMGFILMYDITNEESFN----AVQDWSTQIKTYSWDNAQVLLVGNKCDMEDE 125
Query: 133 QALVDQLGLESITDREVCCYMISCKDSINIDAVIDWLIK 171
+ + + G + + S KD+IN+ + L+
Sbjct: 126 RVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLVD 164
|
| >d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} Length = 175 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab11b species: Human (Homo sapiens) [TaxId: 9606]
Score = 80.3 bits (197), Expect = 5e-20
Identities = 36/160 (22%), Positives = 62/160 (38%), Gaps = 8/160 (5%)
Query: 17 LIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMR----KVTKGNVTIKLWDLGGQRRFRT 72
LIG GK++L++ ++ + T+G +V + ++WD GQ R+R
Sbjct: 9 LIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRR 68
Query: 73 MWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSK 132
+ Y RG L V D A + L EL S I ++++GNK D
Sbjct: 69 ITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHAD-SNIVIMLVGNKSDLRH---L 124
Query: 133 QALVDQLGLESITDREVCCYMISCKDSINIDAVIDWLIKH 172
+A+ + S DS N++ ++
Sbjct: 125 RAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTE 164
|
| >d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]} Length = 221 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Cow (Bos taurus) [TaxId: 9913]
Score = 79.4 bits (195), Expect = 3e-19
Identities = 29/131 (22%), Positives = 54/131 (41%), Gaps = 14/131 (10%)
Query: 9 FKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQR 68
++ L L+G +GK+++V + ++ T G K V ++D+GGQR
Sbjct: 3 YRATHRLLLLGAGESGKSTIVKQMRIL----HVVLTSGIFETKFQVDKVNFHMFDVGGQR 58
Query: 69 RFRTMWERYCRGVSAILYVVDAADRDSVPI----------ARSELHELLMKPSLSGIPLL 118
R W + V+AI++VV ++ + V A + + L I ++
Sbjct: 59 DERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRTISVI 118
Query: 119 VLGNKIDKSEA 129
+ NK D
Sbjct: 119 LFLNKQDLLAE 129
|
| >d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]} Length = 170 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab26 species: Human (Homo sapiens) [TaxId: 9606]
Score = 77.6 bits (190), Expect = 4e-19
Identities = 33/160 (20%), Positives = 61/160 (38%), Gaps = 9/160 (5%)
Query: 17 LIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRK-----VTKGNVTIKLWDLGGQRRFR 71
L+G GKT L+ G + + + V V +++WD GQ RFR
Sbjct: 11 LVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFR 70
Query: 72 TMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALS 131
++ Y R A+L + D ++ S ++ L E+ +L+ E +
Sbjct: 71 SVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVDSAHERVV 130
Query: 132 KQALVDQLGLESITDREVCCYMISCKDSINIDAVIDWLIK 171
K+ + G + + + S K +N+D + K
Sbjct: 131 KR----EDGEKLAKEYGLPFMETSAKTGLNVDLAFTAIAK 166
|
| >d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} Length = 186 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab27b species: Human (Homo sapiens) [TaxId: 9606]
Score = 76.8 bits (188), Expect = 1e-18
Identities = 32/170 (18%), Positives = 66/170 (38%), Gaps = 17/170 (10%)
Query: 17 LIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVT--------------KGNVTIKLW 62
+G GKT+ + ++ I TVG + R+ V ++LW
Sbjct: 10 ALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLW 69
Query: 63 DLGGQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGN 122
D GQ RFR++ + R L + D + S R+ + +L ++++GN
Sbjct: 70 DTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGN 129
Query: 123 KIDKSEALSKQALVDQLGLESITDREVCCYMISCKDSINIDAVIDWLIKH 172
K D + ++ + ++ E + + S N++ ++ L+
Sbjct: 130 KADLPD---QREVNERQARELADKYGIPYFETSAATGQNVEKAVETLLDL 176
|
| >d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} Length = 169 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL1 [TaxId: 9606]
Score = 75.9 bits (185), Expect = 2e-18
Identities = 56/163 (34%), Positives = 91/163 (55%), Gaps = 1/163 (0%)
Query: 12 EMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRFR 71
EM + ++GL AGKT+++ + G IPT+GFN+ VT N+ ++WDLGG R
Sbjct: 5 EMRILILGLDGAGKTTILYRLQVGEVVT-TIPTIGFNVETVTYKNLKFQVWDLGGLTSIR 63
Query: 72 TMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALS 131
W Y A++YVVD+ DRD + I++SEL +L + L L+V NK D +A++
Sbjct: 64 PYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMT 123
Query: 132 KQALVDQLGLESITDREVCCYMISCKDSINIDAVIDWLIKHSK 174
+ + LGL ++ DR+ + S +D ++WL++ K
Sbjct: 124 SSEMANSLGLPALKDRKWQIFKTSATKGTGLDEAMEWLVETLK 166
|
| >d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} Length = 166 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab14 species: Human (Homo sapiens) [TaxId: 9606]
Score = 74.9 bits (183), Expect = 4e-18
Identities = 32/159 (20%), Positives = 61/159 (38%), Gaps = 8/159 (5%)
Query: 17 LIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMR----KVTKGNVTIKLWDLGGQRRFRT 72
+IG GK+ L++ + D T+G +V+ + +++WD GQ RFR
Sbjct: 9 IIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRA 68
Query: 73 MWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSK 132
+ Y RG + L V D R + S + ++++GNK D +
Sbjct: 69 VTRSYYRGAAGALMVYDITRRSTYNHLSSW-LTDARNLTNPNTVIILIGNKADLEA---Q 124
Query: 133 QALVDQLGLESITDREVCCYMISCKDSINIDAVIDWLIK 171
+ + + + + + S K N++ K
Sbjct: 125 RDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAAK 163
|
| >d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} Length = 167 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap2a species: Human (Homo sapiens) [TaxId: 9606]
Score = 72.3 bits (176), Expect = 4e-17
Identities = 28/164 (17%), Positives = 66/164 (40%), Gaps = 6/164 (3%)
Query: 11 QEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKV---TKGNVTIKLWDLGGQ 67
+E ++ ++G GK++L TG + E PT+ RK +++ D G
Sbjct: 2 REYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGT 61
Query: 68 RRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKS 127
+F +M + Y + + V ++ S + +++ +P++++GNK+D
Sbjct: 62 EQFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLE 121
Query: 128 EALSKQALVDQLGLESITDREVCCYMISCKDSINIDAVIDWLIK 171
++ + G + S K +D + +++
Sbjct: 122 S---EREVSSSEGRALAEEWGCPFMETSAKSKTMVDELFAEIVR 162
|
| >d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} Length = 173 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab2b species: Human (Homo sapiens) [TaxId: 9606]
Score = 72.2 bits (176), Expect = 6e-17
Identities = 33/159 (20%), Positives = 63/159 (39%), Gaps = 8/159 (5%)
Query: 17 LIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRK----VTKGNVTIKLWDLGGQRRFRT 72
+IG GK+ L+ + T+G + + +++WD GQ FR+
Sbjct: 8 IIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRS 67
Query: 73 MWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSK 132
+ Y RG + L V D R++ S L + S S + ++++GNK D +
Sbjct: 68 ITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSS-SNMVIMLIGNKSDLES---R 123
Query: 133 QALVDQLGLESITDREVCCYMISCKDSINIDAVIDWLIK 171
+ + + G + + S K + N++ K
Sbjct: 124 RDVKREEGEAFAREHGLIFMETSAKTACNVEEAFINTAK 162
|
| >d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} Length = 200 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Score = 72.3 bits (176), Expect = 8e-17
Identities = 35/193 (18%), Positives = 72/193 (37%), Gaps = 35/193 (18%)
Query: 12 EMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRFR 71
E++L L+G +GK++ + + +PT G +V ++ D+GGQR R
Sbjct: 2 ELKLLLLGTGESGKSTFIKQMRII--HGSGVPTTGIIEYPFDLQSVIFRMVDVGGQRSER 59
Query: 72 TMWERYCRGVSAILYVVDAADRDSVPI----------ARSELHELLMKPSLSGIPLLVLG 121
W V++I+++V ++ D V + +++ ++ P +++
Sbjct: 60 RKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFL 119
Query: 122 N-KIDKSEALSKQALVDQ----------------------LGLESITDREVCCYMISCKD 158
N K E + LVD + L +D+ + + D
Sbjct: 120 NKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTCATD 179
Query: 159 SINIDAVIDWLIK 171
+ NI V +
Sbjct: 180 TENIRFVFAAVKD 192
|
| >d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 195 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 71.9 bits (175), Expect = 1e-16
Identities = 35/193 (18%), Positives = 63/193 (32%), Gaps = 38/193 (19%)
Query: 12 EMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRFR 71
E++L L+G +GK+++V G T ++ K++D+GGQR R
Sbjct: 2 EVKLLLLGAGESGKSTIVKQ-----MKIIHEAGTGIVETHFTFKDLHFKMFDVGGQRSER 56
Query: 72 TMWERYCRGVSAILYVVDAADRDSVPIAR----------SELHELLMKPSLSGIPLLVLG 121
W GV+AI++ V +D D V + + +++
Sbjct: 57 KKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILFL 116
Query: 122 N-KIDKSEALSKQALVDQLGLE----------------------SITDREVCCYMISCKD 158
N K E + K L +E+ + D
Sbjct: 117 NKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATD 176
Query: 159 SINIDAVIDWLIK 171
+ N+ V D +
Sbjct: 177 TKNVQFVFDAVTD 189
|
| >d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} Length = 174 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab4a species: Human (Homo sapiens) [TaxId: 9606]
Score = 71.1 bits (173), Expect = 2e-16
Identities = 35/159 (22%), Positives = 60/159 (37%), Gaps = 8/159 (5%)
Query: 17 LIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVT----KGNVTIKLWDLGGQRRFRT 72
+IG GK+ L++ + +D T+G V +++WD GQ RFR+
Sbjct: 10 VIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRS 69
Query: 73 MWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSK 132
+ Y RG + L V D R++ + L + M S I +++ GNK D
Sbjct: 70 VTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLAS-QNIVIILCGNKKDLDADREV 128
Query: 133 QALVDQLGLESITDREVCCYMISCKDSINIDAVIDWLIK 171
L + E+ S N++ +
Sbjct: 129 TFLEAS---RFAQENELMFLETSALTGENVEEAFVQCAR 164
|
| >d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 170 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ypt51 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 70.1 bits (170), Expect = 3e-16
Identities = 40/163 (24%), Positives = 74/163 (45%), Gaps = 5/163 (3%)
Query: 13 MELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTK----GNVTIKLWDLGGQR 68
++L L+G GK+S+V + ++E+ PT+G V ++WD GQ
Sbjct: 4 IKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQE 63
Query: 69 RFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSE 128
RF ++ Y R A L V D S AR + E L + + I + ++GNKID +
Sbjct: 64 RFASLAPMYYRNAQAALVVYDVTKPQSFIKARHWVKE-LHEQASKDIIIALVGNKIDMLQ 122
Query: 129 ALSKQALVDQLGLESITDREVCCYMISCKDSINIDAVIDWLIK 171
++ + + G + ++ + + S K N++ V + +
Sbjct: 123 EGGERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVFLGIGE 165
|
| >d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]} Length = 174 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab9a species: Human (Homo sapiens) [TaxId: 9606]
Score = 68.4 bits (166), Expect = 1e-15
Identities = 40/162 (24%), Positives = 66/162 (40%), Gaps = 10/162 (6%)
Query: 17 LIGLQNAGKTSLVNTIATGGYSEDMIPTVGFN----MRKVTKGNVTIKLWDLGGQRRFRT 72
L+G GK+SL+N T + + T+G +V VT+++WD GQ RFR+
Sbjct: 11 LLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRS 70
Query: 73 MWERYCRGVSAILYVVDAADRDSVPIARSELHELLM---KPSLSGIPLLVLGNKIDKSEA 129
+ + RG L D S + E + P ++LGNKID SE
Sbjct: 71 LRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDISER 130
Query: 130 LSKQALVDQLGLESITDREVCCYMISCKDSINIDAVIDWLIK 171
++ + + S KD+ N+ A + ++
Sbjct: 131 QVSTEEAQAWCRDN---GDYPYFETSAKDATNVAAAFEEAVR 169
|
| >d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} Length = 200 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Score = 68.0 bits (165), Expect = 3e-15
Identities = 31/185 (16%), Positives = 63/185 (34%), Gaps = 37/185 (20%)
Query: 17 LIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTMWER 76
L+G +GK++ + + PT G + NV K+ D+GGQR R W
Sbjct: 7 LLGAGESGKSTFLKQMR---IIHGQDPTKGIHEYDFEIKNVPFKMVDVGGQRSERKRWFE 63
Query: 77 YCRGVSAILYVVDAADRDSV----------PIARSELHELLMKPSLSGIPLLVLGN-KID 125
V++IL++V +++ D V + + ++ S + +++ N
Sbjct: 64 CFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVSIILFLNKTDL 123
Query: 126 KSEALSKQALVDQLG-----------------------LESITDREVCCYMISCKDSINI 162
E + ++ D R + + + ++ NI
Sbjct: 124 LEEKVQVVSIKDYFLEFEGDPHCLRDVQKFLVECFRGKRRDQQQRPLYHHFTTAINTENI 183
Query: 163 DAVID 167
V
Sbjct: 184 RLVFR 188
|
| >d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]} Length = 170 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab5a species: Human (Homo sapiens) [TaxId: 9606]
Score = 67.4 bits (163), Expect = 4e-15
Identities = 40/160 (25%), Positives = 68/160 (42%), Gaps = 8/160 (5%)
Query: 17 LIGLQNAGKTSLVNTIATGGYSEDMIPTVG----FNMRKVTKGNVTIKLWDLGGQRRFRT 72
L+G GK+SLV G + E T+G + V ++WD GQ R+ +
Sbjct: 11 LLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHS 70
Query: 73 MWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSK 132
+ Y RG A + V D + +S A++ + EL + S I + + GNK D + +
Sbjct: 71 LAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQAS-PNIVIALSGNKADLANKRAV 129
Query: 133 QALVDQLGLESITDREVCCYMISCKDSINIDAVIDWLIKH 172
Q + D + S K S+N++ + + K
Sbjct: 130 DFQEAQSYAD---DNSLLFMETSAKTSMNVNEIFMAIAKK 166
|
| >d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]} Length = 164 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab6 species: Human (Homo sapiens) [TaxId: 9606]
Score = 66.9 bits (162), Expect = 4e-15
Identities = 35/159 (22%), Positives = 68/159 (42%), Gaps = 8/159 (5%)
Query: 17 LIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTK----GNVTIKLWDLGGQRRFRT 72
+G Q+ GKTSL+ + T+G + T + ++LWD GQ RFR+
Sbjct: 5 FLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGQERFRS 64
Query: 73 MWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSK 132
+ Y R +A + V D + +S + ++ + S + ++++GNK D ++ K
Sbjct: 65 LIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERG-SDVIIMLVGNKTDLAD---K 120
Query: 133 QALVDQLGLESITDREVCCYMISCKDSINIDAVIDWLIK 171
+ + + G + V S K N+ + +
Sbjct: 121 RQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAA 159
|
| >d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} Length = 207 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Mouse (Mus musculus) [TaxId: 10090]
Score = 66.2 bits (160), Expect = 2e-14
Identities = 36/156 (23%), Positives = 61/156 (39%), Gaps = 8/156 (5%)
Query: 17 LIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDL----GGQRRFRT 72
+GL ++GKT L + TG Y + ++ + N L G +
Sbjct: 5 FVGLCDSGKTLLFVRLLTGQYRDT-QTSITDSSAIYKVNNNRGNSLTLIDLPGHESLRFQ 63
Query: 73 MWERYCRGVSAILYVVDAADRDS-VPIARSELHELLMKPSLS--GIPLLVLGNKIDKSEA 129
+ +R+ A+++VVD+A V L+++L+ LL+ NK D + A
Sbjct: 64 LLDRFKSSARAVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMA 123
Query: 130 LSKQALVDQLGLESITDREVCCYMISCKDSINIDAV 165
S + + QL E T R S DS +
Sbjct: 124 KSAKLIQQQLEKELNTLRVTRSAAPSTLDSSSTAPA 159
|
| >d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]} Length = 168 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein RalA species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]
Score = 64.2 bits (155), Expect = 5e-14
Identities = 34/161 (21%), Positives = 59/161 (36%), Gaps = 6/161 (3%)
Query: 17 LIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTKGN---VTIKLWDLGGQRRFRTM 73
++G GK++L + ED PT + RK + V I + D GQ + +
Sbjct: 9 MVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAI 68
Query: 74 WERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQ 133
+ Y R L V + +S ++L +P L++GNK D +
Sbjct: 69 RDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVS 128
Query: 134 ALVDQLGLESITDREVCCYMISCKDSINIDAVIDWLIKHSK 174
+ + V S K N+D V L++ +
Sbjct: 129 VEEAKNRADQW---NVNYVETSAKTRANVDKVFFDLMREIR 166
|
| >d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 175 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein ypt7p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 62.4 bits (150), Expect = 3e-13
Identities = 39/163 (23%), Positives = 71/163 (43%), Gaps = 9/163 (5%)
Query: 17 LIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVT-----KGNVTIKLWDLGGQRRFR 71
++G GKTSL++ YS+ T+G + T+++WD GQ RF+
Sbjct: 7 ILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQ 66
Query: 72 TMWERYCRGVSAILYVVDAADRDS---VPIARSELHELLMKPSLSGIPLLVLGNKIDKSE 128
++ + RG + V D + S + R E S P ++LGNKID E
Sbjct: 67 SLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEE 126
Query: 129 ALSKQALVDQLGLESITDREVCCYMISCKDSINIDAVIDWLIK 171
+ + L + ++ ++ S K++IN+D + + +
Sbjct: 127 SKKIVSEKSAQELAK-SLGDIPLFLTSAKNAINVDTAFEEIAR 168
|
| >d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} Length = 166 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: cH-p21 Ras protein species: Human (Homo sapiens) [TaxId: 9606]
Score = 61.9 bits (149), Expect = 4e-13
Identities = 25/164 (15%), Positives = 58/164 (35%), Gaps = 7/164 (4%)
Query: 11 QEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVG---FNMRKVTKGNVTIKLWDLGGQ 67
E +L ++G GK++L + + ++ PT+ + + + D GQ
Sbjct: 2 TEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQ 61
Query: 68 RRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKS 127
+ M ++Y R L V + S ++ +P++++GNK D +
Sbjct: 62 EEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA 121
Query: 128 EALSKQALVDQLGLESITDREVCCYMISCKDSINIDAVIDWLIK 171
+ + + + S K ++ L++
Sbjct: 122 ARTVES----RQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVR 161
|
| >d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 184 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab7 species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 61.6 bits (148), Expect = 5e-13
Identities = 38/163 (23%), Positives = 64/163 (39%), Gaps = 10/163 (6%)
Query: 17 LIGLQNAGKTSLVNTIATGGYSEDMIPTVG----FNMRKVTKGNVTIKLWDLGGQRRFRT 72
++G GKTSL+N +S T+G V VT+++WD GQ RF++
Sbjct: 7 ILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQS 66
Query: 73 MWERYCRGVSAILYVVDAADRDSVPIARSELHELLM---KPSLSGIPLLVLGNKIDKSEA 129
+ + RG + V D ++ S E L+ P +VLGNKID
Sbjct: 67 LGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLENR 126
Query: 130 LSKQALVDQLGLESITDREVCCYMISCKDSINIDAVIDWLIKH 172
+ + S K++IN++ + ++
Sbjct: 127 QVATKRAQAWCYS---KNNIPYFETSAKEAINVEQAFQTIARN 166
|
| >d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]} Length = 183 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rac species: Human (Homo sapiens) [TaxId: 9606]
Score = 61.2 bits (147), Expect = 1e-12
Identities = 33/174 (18%), Positives = 59/174 (33%), Gaps = 14/174 (8%)
Query: 11 QEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTK---GNVTIKLWDLGGQ 67
Q ++ ++G GKT L+ + T + + IPTV N V + LWD GQ
Sbjct: 4 QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQ 63
Query: 68 RRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKID-- 125
+ + L S R++ + + P++++G K+D
Sbjct: 64 EDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLR 122
Query: 126 -------KSEALSKQALVDQLGLESITDREVCCYM-ISCKDSINIDAVIDWLIK 171
K + + GL + Y+ S + V D I+
Sbjct: 123 DDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIR 176
|
| >d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]} Length = 167 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab21 species: Human (Homo sapiens) [TaxId: 9606]
Score = 60.3 bits (145), Expect = 1e-12
Identities = 35/159 (22%), Positives = 55/159 (34%), Gaps = 8/159 (5%)
Query: 17 LIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTKG----NVTIKLWDLGGQRRFRT 72
L+G GKTSLV +++ I T+G + V + +WD GQ RF
Sbjct: 8 LLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHA 67
Query: 73 MWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSK 132
+ Y R + + V D D DS ++ + EL +V + E
Sbjct: 68 LGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLEKERHVS 127
Query: 133 QALVDQLGLESITDREVCCYMISCKDSINIDAVIDWLIK 171
+ Y S K + I+ + L K
Sbjct: 128 IQEAESY----AESVGAKHYHTSAKQNKGIEELFLDLCK 162
|
| >d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]} Length = 167 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap1A species: Human (Homo sapiens) [TaxId: 9606]
Score = 60.0 bits (144), Expect = 2e-12
Identities = 30/164 (18%), Positives = 63/164 (38%), Gaps = 5/164 (3%)
Query: 11 QEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTK---GNVTIKLWDLGGQ 67
+E +L ++G GK++L G + E PT+ + RK + +++ D G
Sbjct: 2 REYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDCQQCMLEILDTAGT 61
Query: 68 RRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKS 127
+F M + Y + V + + + ++L +P++++GNK D
Sbjct: 62 EQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLE 121
Query: 128 EALSKQALVDQLGLESITDREVCCYMISCKDSINIDAVIDWLIK 171
+ Q + S K IN++ + L++
Sbjct: 122 DERVVGKEQGQNLARQWCN--CAFLESSAKSKINVNEIFYDLVR 163
|
| >d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 209 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 59.6 bits (143), Expect = 5e-12
Identities = 30/166 (18%), Positives = 49/166 (29%), Gaps = 15/166 (9%)
Query: 17 LIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTMWER 76
+ G QN+GKTSL+ + T + + L D G + R
Sbjct: 8 IAGPQNSGKTSLLTLLTTDSVRP--TVVSQEPLSAADYDGSGVTLVDFPGHVKLRYKLSD 65
Query: 77 Y-----CRGVSAILYVVDAADRDSVPIARSELHEL---LMKPSLSGIPLLVLGNKIDKSE 128
Y I V D + L ++ +GI +L+ NK +
Sbjct: 66 YLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFT 125
Query: 129 ALSKQALVDQLGLESITDRE-----VCCYMISCKDSINIDAVIDWL 169
A + D L E E + + + +D L
Sbjct: 126 ARPPSKIKDALESEIQKVIERRKKSLNEVERKINEEDYAENTLDVL 171
|
| >d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]} Length = 185 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoQ species: Human (Homo sapiens) [TaxId: 9606]
Score = 58.5 bits (140), Expect = 9e-12
Identities = 32/168 (19%), Positives = 58/168 (34%), Gaps = 14/168 (8%)
Query: 17 LIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTK---GNVTIKLWDLGGQRRFRTM 73
++G GKT L+ + A + E+ +PTV + + L+D GQ + +
Sbjct: 14 VVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRL 73
Query: 74 WERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQ 133
L + S E +K +P L++G +ID +
Sbjct: 74 RPLSYPMTDVFLICFSVVNPASF-QNVKEEWVPELKEYAPNVPFLLIGTQIDLRDDPKTL 132
Query: 134 ALVDQLGLESITDRE---------VCCYM-ISCKDSINIDAVIDWLIK 171
A ++ + + I + CCY+ S + V D I
Sbjct: 133 ARLNDMKEKPICVEQGQKLAKEIGACCYVECSALTQKGLKTVFDEAII 180
|
| >d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]} Length = 173 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras species: Human (Homo sapiens) [TaxId: 9606]
Score = 57.8 bits (138), Expect = 1e-11
Identities = 36/159 (22%), Positives = 61/159 (38%), Gaps = 8/159 (5%)
Query: 17 LIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTKGN---VTIKLWDLGGQRRFRTM 73
++G GK++L + D PT+ + K+ + + + D GQ F M
Sbjct: 11 VVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYTKICSVDGIPARLDILDTAGQEEFGAM 70
Query: 74 WERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQ 133
E+Y R L V DR S ++L P++++GNK D L Q
Sbjct: 71 REQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKAD----LESQ 126
Query: 134 ALVDQLGLESITDREVCCYM-ISCKDSINIDAVIDWLIK 171
V + + Y S K +N+D + L++
Sbjct: 127 RQVPRSEASAFGASHHVAYFEASAKLRLNVDEAFEQLVR 165
|
| >d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]} Length = 191 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: CDC42 species: Human (Homo sapiens) [TaxId: 9606]
Score = 58.1 bits (139), Expect = 1e-11
Identities = 31/174 (17%), Positives = 55/174 (31%), Gaps = 14/174 (8%)
Query: 11 QEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTK---GNVTIKLWDLGGQ 67
Q ++ ++G GKT L+ + T + + +PTV N T+ L+D GQ
Sbjct: 2 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQ 61
Query: 68 RRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKS 127
+ + L S + + + P L++G +ID
Sbjct: 62 EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLR 120
Query: 128 EALSKQALVDQLGLESITDRE----------VCCYMISCKDSINIDAVIDWLIK 171
+ S + + + IT V S + V D I
Sbjct: 121 DDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAIL 174
|
| >d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} Length = 171 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 57.4 bits (137), Expect = 2e-11
Identities = 33/158 (20%), Positives = 55/158 (34%), Gaps = 6/158 (3%)
Query: 17 LIGLQNAGKTSLVNTIATGGYSEDMIPTVG---FNMRKVTKGNVTIKLWDLGGQRRFRTM 73
++G GK++L + D PT+ + + + D GQ F M
Sbjct: 10 VVGGGGVGKSALTIQFIQSYFVTDYDPTIEDSYTKQCVIDDRAARLDILDTAGQEEFGAM 69
Query: 74 WERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQ 133
E+Y R L V DR S ++L P++++GNK D
Sbjct: 70 REQYMRTGEGFLLVFSVTDRGSFEEIYKFQRQILRVKDRDEFPMILIGNKADLDHQRQVT 129
Query: 134 ALVDQLGLESITDREVCCYMISCKDSINIDAVIDWLIK 171
Q + +V S K +N+D L++
Sbjct: 130 QEEGQQLARQL---KVTYMEASAKIRMNVDQAFHELVR 164
|
| >d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} Length = 165 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-33b species: Mouse (Mus musculus) [TaxId: 10090]
Score = 55.0 bits (131), Expect = 1e-10
Identities = 34/154 (22%), Positives = 61/154 (39%), Gaps = 8/154 (5%)
Query: 17 LIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVT-----KGNVTIKLWDLGGQRRFR 71
+IG N GKT L G + + T+G + R+ + G +R +
Sbjct: 7 VIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRK 66
Query: 72 TMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALS 131
+M + Y R V A+++V D + S + + E + IP +++GNK D A+
Sbjct: 67 SMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRSAIQ 126
Query: 132 KQALVDQLGLESITDREVCCYMISCKDSINIDAV 165
L + + + S K+ + D V
Sbjct: 127 VP---TDLAQKFADTHSMPLFETSAKNPNDNDHV 157
|
| >d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]} Length = 170 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ran species: Human (Homo sapiens) [TaxId: 9606]
Score = 54.7 bits (130), Expect = 2e-10
Identities = 34/159 (21%), Positives = 63/159 (39%), Gaps = 11/159 (6%)
Query: 17 LIGLQNAGKTSLVNTIATGGYSEDMIPTVGFN----MRKVTKGNVTIKLWDLGGQRRFRT 72
L+G GKT+ V TG + + + T+G + +G + +WD GQ +F
Sbjct: 8 LVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGG 67
Query: 73 MWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSK 132
+ + Y + + D R + + + + IP+++ GNK+D K
Sbjct: 68 LRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRD--LVRVCENIPIVLCGNKVDI-----K 120
Query: 133 QALVDQLGLESITDREVCCYMISCKDSINIDAVIDWLIK 171
V + + + Y IS K + N + WL +
Sbjct: 121 DRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLAR 159
|
| >d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]} Length = 177 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoA species: Human (Homo sapiens) [TaxId: 9606]
Score = 53.9 bits (128), Expect = 4e-10
Identities = 29/168 (17%), Positives = 56/168 (33%), Gaps = 14/168 (8%)
Query: 17 LIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTKGN---VTIKLWDLGGQRRFRTM 73
++G GKT L+ + + E +PTV N + + V + LWD G + +
Sbjct: 7 IVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRL 66
Query: 74 WERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQ 133
IL DS+ + + +P++++GNK D +
Sbjct: 67 RPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFC-PNVPIILVGNKKDLRNDEHTR 125
Query: 134 ALVDQLGLESITDRE----------VCCYMISCKDSINIDAVIDWLIK 171
+ ++ E + E S K + V + +
Sbjct: 126 RELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATR 173
|
| >d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} Length = 164 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab23 species: Mouse (Mus musculus) [TaxId: 10090]
Score = 53.6 bits (127), Expect = 5e-10
Identities = 35/163 (21%), Positives = 69/163 (42%), Gaps = 9/163 (5%)
Query: 13 MELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGF----NMRKVTKGNVTIKLWDLGGQR 68
+++ ++G GK+S++ G +++D T+G +V +V + LWD GQ
Sbjct: 3 IKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQE 62
Query: 69 RFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSE 128
F + + Y RG A + V DR+ + + IP ++ NKID +
Sbjct: 63 EFDAITKAYYRGAQACVLVFSTTDRE--SFEAISSWREKVVAEVGDIPTALVQNKIDLLD 120
Query: 129 ALSKQALVDQLGLESITDREVCCYMISCKDSINIDAVIDWLIK 171
+ ++ ++ Y S K+ +N+ V +L +
Sbjct: 121 ---DSCIKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVFKYLAE 160
|
| >d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} Length = 171 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: di-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 53.1 bits (126), Expect = 8e-10
Identities = 33/167 (19%), Positives = 61/167 (36%), Gaps = 7/167 (4%)
Query: 12 EMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTKGNVTIKLW----DLGGQ 67
+ +++ G GK+SLV G + E IPTV R+V + +I G
Sbjct: 2 DYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQVISCDKSICTLQITDTTGSH 61
Query: 68 RRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKS 127
+ +G + IL + + + +K + IP++++GNK D+S
Sbjct: 62 QFPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDES 121
Query: 128 EALSKQALVDQLGLESITDREVCCYMISCKDSINIDAVIDWLIKHSK 174
+ Q + S K + N+ + L+ K
Sbjct: 122 PSREVQ---SSEAEALARTWKCAFMETSAKLNHNVKELFQELLNLEK 165
|
| >d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} Length = 167 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-22a species: Mouse (Mus musculus) [TaxId: 10090]
Score = 52.3 bits (124), Expect = 1e-09
Identities = 29/165 (17%), Positives = 61/165 (36%), Gaps = 8/165 (4%)
Query: 11 QEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFN----MRKVTKGNVTIKLWDLGG 66
+E+++ L+G GK+S++ + ++ PT+G + + +WD G
Sbjct: 3 RELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAG 62
Query: 67 QRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDK 126
RFR + Y RG +A + V D ++ ++ + EL S + +
Sbjct: 63 LERFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLT 122
Query: 127 SEALSKQALVDQLGLESITDREVCCYMISCKDSINIDAVIDWLIK 171
+ S K++INI+ + + +
Sbjct: 123 DVREVMERDAKDY----ADSIHAIFVETSAKNAININELFIEISR 163
|
| >d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]} Length = 169 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein M-Ras (XRas) species: Mouse (Mus musculus) [TaxId: 10090]
Score = 50.4 bits (119), Expect = 6e-09
Identities = 33/160 (20%), Positives = 60/160 (37%), Gaps = 9/160 (5%)
Query: 17 LIGLQNAGKTSLVNTIATGGYSEDMIPTV---GFNMRKVTKGNVTIKLWDLGGQRRFRTM 73
++G GK++L + D PT+ ++ + + D GQ F M
Sbjct: 9 VVGDGGVGKSALTIQFFQKIFVPDYDPTIEDSYLKHTEIDNQWAILDVLDTAGQEEFSAM 68
Query: 74 WERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQ 133
E+Y R L V D+ S +L P++++ NK+D L
Sbjct: 69 REQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVD----LMHL 124
Query: 134 ALVDQLGLESITDREVCCYM-ISCKDS-INIDAVIDWLIK 171
V + + + + Y+ S KD +N+D L++
Sbjct: 125 RKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHDLVR 164
|
| >d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]} Length = 175 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Centaurin gamma 1, G domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 49.6 bits (117), Expect = 1e-08
Identities = 27/163 (16%), Positives = 56/163 (34%), Gaps = 3/163 (1%)
Query: 11 QEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRF 70
E+ L ++G +GK+SL++ TG Y +++ T +
Sbjct: 4 PELRLGVLGDARSGKSSLIHRFLTGSYQVLEKTESEQYKKEMLVDGQTHLVLIREEAGAP 63
Query: 71 RTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEAL 130
+ + V + + D +V +L L + G+ L ++G + S +
Sbjct: 64 DAKFSGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGR-GGLALALVGTQDRISASS 122
Query: 131 SKQALVDQLGLESITDREVCCYM-ISCKDSINIDAVIDWLIKH 172
+ D D + C Y +N+D V + +
Sbjct: 123 PRVV-GDARARALCADMKRCSYYETCATYGLNVDRVFQEVAQK 164
|
| >d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]} Length = 180 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Thermus thermophilus [TaxId: 274]
Score = 47.3 bits (111), Expect = 1e-07
Identities = 39/176 (22%), Positives = 65/176 (36%), Gaps = 21/176 (11%)
Query: 14 ELSLIGLQNAGKTSLVNTI-----ATGGYSEDMI-PTVGFNMRKVTKGNVTIKLWDLGGQ 67
++ L+G NAGK+SL+ + Y + P +G L D+ G
Sbjct: 3 DVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVE---VSEEERFTLADIPGI 59
Query: 68 RRFRTMWE-------RYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVL 120
+ + R+ +LYV+DAAD + P+L P LV
Sbjct: 60 IEGASEGKGLGLEFLRHIARTRVLLYVLDAADEPLKTLETLRKEVGAYDPALLRRPSLVA 119
Query: 121 GNKIDKSEALSKQALVDQLGLESITDREVCCYMISCKDSINIDAVIDWLIKHSKTA 176
NK+D E + +AL D L E + +S + A+ + L ++
Sbjct: 120 LNKVDLLEEEAVKALADALAREGL-----AVLPVSALTGAGLPALKEALHALVRST 170
|
| >d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]} Length = 168 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-like estrogen-regulated growth inhibitor, RERG species: Human (Homo sapiens) [TaxId: 9606]
Score = 46.9 bits (110), Expect = 1e-07
Identities = 31/163 (19%), Positives = 59/163 (36%), Gaps = 6/163 (3%)
Query: 12 EMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGG--QRR 69
E++L++ G GK++LV T + + PT+ R + + ++ +
Sbjct: 2 EVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQATIDDEVVSMEILDTAGQE 61
Query: 70 FRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEA 129
E + R + V D DR S + L + L+++GNK D
Sbjct: 62 DTIQREGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDH- 120
Query: 130 LSKQALVDQLGLESITDREVCCYMISCKDS-INIDAVIDWLIK 171
+ + + G + T+ Y S NI + L +
Sbjct: 121 --SRQVSTEEGEKLATELACAFYECSACTGEGNITEIFYELCR 161
|
| >d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} Length = 179 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoE (RND3) species: Mouse (Mus musculus) [TaxId: 10090]
Score = 46.6 bits (109), Expect = 2e-07
Identities = 26/169 (15%), Positives = 58/169 (34%), Gaps = 15/169 (8%)
Query: 17 LIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTKGN---VTIKLWDLGGQRRFRTM 73
++G GKT+L++ A + E+ +PTV N + + + + LWD G + +
Sbjct: 7 VVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNV 66
Query: 74 WERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQ 133
A+L D + +++ + + + +L++G K D +S
Sbjct: 67 RPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFC-PNTKMLLVGCKSDLRTDVSTL 125
Query: 134 ALVDQLGLESITDRE----------VCCYMISCKDSIN-IDAVIDWLIK 171
+ ++ + S S N + +
Sbjct: 126 VELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIFHVATL 174
|
| >d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]} Length = 167 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein RheB species: Human (Homo sapiens) [TaxId: 9606]
Score = 44.0 bits (102), Expect = 1e-06
Identities = 31/167 (18%), Positives = 64/167 (38%), Gaps = 6/167 (3%)
Query: 11 QEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTKGN---VTIKLWDLGGQ 67
+ +++++G ++ GK+SL G + + PT+ K+ N ++L D GQ
Sbjct: 3 KSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITVNGQEYHLQLVDTAGQ 62
Query: 68 RRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKS 127
+ + Y ++ + V S + + +LL IP++++GNK D
Sbjct: 63 DEYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLH 122
Query: 128 EALSKQALVDQLGLESITDREVCCYMISCKDSINIDAVIDWLIKHSK 174
+ ES S K++ V +I ++
Sbjct: 123 MERVISYEEGKALAESW---NAAFLESSAKENQTAVDVFRRIILEAE 166
|
| >d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]} Length = 184 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein engB species: Pyrococcus horikoshii [TaxId: 53953]
Score = 43.5 bits (101), Expect = 2e-06
Identities = 26/177 (14%), Positives = 49/177 (27%), Gaps = 20/177 (11%)
Query: 16 SLIGLQNAGKTSLVNTIATGGYSEDMIPTV---------GFNMRKVTKGNVTIKLWDLGG 66
G N GK++L+ + P V + G +
Sbjct: 4 IFAGRSNVGKSTLIYRLTGKKVRRGKRPGVTRKIIEIEWKNHKIIDMPGFGFMMGLPKEV 63
Query: 67 QRRFRTMWERYCRG----------VSAILYVVDAADRDSVPIARSELHELLMKPSLSGIP 116
Q R + + V + R E IP
Sbjct: 64 QERIKDEIVHFIEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELDIP 123
Query: 117 LLVLGNKIDKSEALSKQALVDQLGLE-SITDREVCCYMISCKDSINIDAVIDWLIKH 172
+V NK+DK + + + E +++ + IS K NI+ + + + +
Sbjct: 124 TIVAVNKLDKIKNVQEVINFLAEKFEVPLSEIDKVFIPISAKFGDNIERLKNRIFEV 180
|
| >d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 179 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Escherichia coli [TaxId: 562]
Score = 43.2 bits (100), Expect = 3e-06
Identities = 25/169 (14%), Positives = 50/169 (29%), Gaps = 20/169 (11%)
Query: 16 SLIGLQNAGKTSLVNTI------------ATGGYSEDMIPTVGFNMRKVTKGNVTIKLWD 63
+++G N GK++L+N + T + I T G
Sbjct: 9 AIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGAYQAIYVDTPGLHMEEK 68
Query: 64 LGGQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNK 123
R V +++VV+ P + + NK
Sbjct: 69 RAINRLMNKAASSSIGDVELVIFVVEGTRWTPDDEMVLNKLREGKAPVILAV------NK 122
Query: 124 IDKSEALSKQALVDQLGLESITDREVCCYMISCKDSINIDAVIDWLIKH 172
+D + + Q + ++ IS + +N+D + + KH
Sbjct: 123 VDNVQEKADLLPHLQFLASQMNFLDI--VPISAETGLNVDTIAAIVRKH 169
|
| >d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]} Length = 172 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein GEM species: Human (Homo sapiens) [TaxId: 9606]
Score = 40.5 bits (93), Expect = 2e-05
Identities = 29/170 (17%), Positives = 54/170 (31%), Gaps = 13/170 (7%)
Query: 8 FFKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLG-- 65
+++ + LIG Q GK++L N A S D V V + +
Sbjct: 3 YYR----VVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILL 58
Query: 66 ----GQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLG 121
+ + + + A L V DR S A +L IP++++G
Sbjct: 59 DMWENKGENEWLHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVG 118
Query: 122 NKIDKSEALSKQALVDQLGLESITDREVCCYMISCKDSINIDAVIDWLIK 171
NK D + + S N+ + + +++
Sbjct: 119 NKSDLVRCREVSVSEGRACAVVF---DCKFIETSAAVQHNVKELFEGIVR 165
|
| >d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]} Length = 195 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Bacillus subtilis [TaxId: 1423]
Score = 40.5 bits (93), Expect = 3e-05
Identities = 27/167 (16%), Positives = 53/167 (31%), Gaps = 9/167 (5%)
Query: 14 ELSLIGLQNAGKTSLVNTI----ATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQRR 69
E++L G N GK+S +N++ S T N + + + G +
Sbjct: 25 EIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYIINDELHFVDVPGYGFAKV 84
Query: 70 FRTMWERYCRGVSAIL-----YVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKI 124
++ E + R + + D ++ ++ GIP++V+ K
Sbjct: 85 SKSEREAWGRMIETYITTREELKAVVQIVDLRHAPSNDDVQMYEFLKYYGIPVIVIATKA 144
Query: 125 DKSEALSKQALVDQLGLESITDREVCCYMISCKDSINIDAVIDWLIK 171
DK + D E + S + D + K
Sbjct: 145 DKIPKGKWDKHAKVVRQTLNIDPEDELILFSSETKKGKDEAWGAIKK 191
|
| >d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]} Length = 400 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-inducible GTPase species: Mouse (Mus musculus) [TaxId: 10090]
Score = 39.8 bits (92), Expect = 8e-05
Identities = 26/191 (13%), Positives = 58/191 (30%), Gaps = 25/191 (13%)
Query: 10 KQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGF------NMRKVTKGNVTIKLWD 63
+ +++ G +GK+S +NT+ G E+ G + WD
Sbjct: 54 SSVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHPNIPNVVFWD 113
Query: 64 LGGQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNK 123
L G + Y + Y + + ++ S+ + K
Sbjct: 114 LPGIGSTNFPPDTYLEKMKFYEYDFFIIISATRF--KKNDIDIAKAISMMKKEFYFVRTK 171
Query: 124 ID---------KSEALSKQALVDQL------GLESITDREVCCYMISCKD--SINIDAVI 166
+D + + K+ ++ + E +++S K+ + ++
Sbjct: 172 VDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENGIAEPPIFLLSNKNVCHYDFPVLM 231
Query: 167 DWLIKHSKTAK 177
D LI K
Sbjct: 232 DKLISDLPIYK 242
|
| >d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]} Length = 168 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rad species: Human (Homo sapiens) [TaxId: 9606]
Score = 38.9 bits (89), Expect = 9e-05
Identities = 24/157 (15%), Positives = 51/157 (32%), Gaps = 5/157 (3%)
Query: 17 LIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTKGNVT--IKLWDLGGQRRFRTMW 74
L+G GK++L + R + + ++D+ Q R +
Sbjct: 6 LLGAPGVGKSALARIFGGVEDGPEAEAAGHTYDRSIVVDGEEASLMVYDIWEQDGGRWLP 65
Query: 75 ERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQA 134
A + V D+ S A +L +P++++GNK D +
Sbjct: 66 GHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVR---SRE 122
Query: 135 LVDQLGLESITDREVCCYMISCKDSINIDAVIDWLIK 171
+ G + S N+ A+ + +++
Sbjct: 123 VSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVVR 159
|
| >d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} Length = 171 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Score = 38.6 bits (88), Expect = 1e-04
Identities = 19/159 (11%), Positives = 50/159 (31%), Gaps = 2/159 (1%)
Query: 16 SLIGLQNAGKTSLVNTI--ATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTM 73
++G N GK++L N + ED ++ +
Sbjct: 4 LIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYGKTFKLVDTCGVFDNPQ 63
Query: 74 WERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQ 133
+ L ++ AD + + + + + ++A + +
Sbjct: 64 DIISQKMKEVTLNMIREADLVLFVVDGKRGITKEDESLADFLRKSTVDTILVANKAENLR 123
Query: 134 ALVDQLGLESITDREVCCYMISCKDSINIDAVIDWLIKH 172
++ E + +S + +IN+D +++ +IK
Sbjct: 124 EFEREVKPELYSLGFGEPIPVSAEHNINLDTMLETIIKK 162
|
| >d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]} Length = 178 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Thermus thermophilus [TaxId: 274]
Score = 38.6 bits (88), Expect = 1e-04
Identities = 19/168 (11%), Positives = 42/168 (25%), Gaps = 19/168 (11%)
Query: 16 SLIGLQNAGKTSLVNTI-----------ATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDL 64
+++G N GK++L+N + + V +
Sbjct: 9 AIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEGRRQIVFVDTPGLHKPMD 68
Query: 65 GGQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKI 124
V+A+++VVD + + + + + +
Sbjct: 69 ALGEFMDQEVYEALADVNAVVWVVDLRHPPTPEDELVARALKPLVGKVPILLVGNKLDAA 128
Query: 125 DKSEALSKQALVDQLGLESITDREVCCYMISCKDSINIDAVIDWLIKH 172
E K E M+S D + + L+
Sbjct: 129 KYPEEAMKA--------YHELLPEAEPRMLSALDERQVAELKADLLAL 168
|
| >d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]} Length = 160 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: TrmE GTPase domain species: Thermotoga maritima [TaxId: 2336]
Score = 38.0 bits (87), Expect = 2e-04
Identities = 27/174 (15%), Positives = 62/174 (35%), Gaps = 27/174 (15%)
Query: 13 MELSLIGLQNAGKTSLVNTIA-------------TGGYSEDMIPTVGFNMRKVTKGNVTI 59
+ + ++G N GK++L+N + T + I G R V V
Sbjct: 1 LRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRGILFRIVDTAGVRS 60
Query: 60 KLWDLGGQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLV 119
+ DL + + +L+V+DA+ + + V
Sbjct: 61 ETNDLVERLGIERTLQEI-EKADIVLFVLDASSPLDEEDRKILERIKNKRYL-------V 112
Query: 120 LGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCKDSINIDAVIDWLIKHS 173
+ NK+D E ++++ + ++LG + IS ++ + + + + +
Sbjct: 113 VINKVDVVEKINEEEIKNKLG------TDRHMVKISALKGEGLEKLEESIYRET 160
|
| >d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]} Length = 185 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Bacillus subtilis [TaxId: 1423]
Score = 36.8 bits (84), Expect = 4e-04
Identities = 19/170 (11%), Positives = 49/170 (28%), Gaps = 13/170 (7%)
Query: 14 ELSLIGLQNAGKTSLVNTI--ATGGYSEDMIPTVGFNMR-KVTKGNVTIKLWDLGGQRR- 69
++ L+G + GK++L++ + A ++ T+ N+ T + + DL G
Sbjct: 3 DVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGMVETDDGRSFVMADLPGLIEG 62
Query: 70 -------FRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGN 122
R + + + P + +
Sbjct: 63 AHQGVGLGHQFLRHIERTRVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQII 122
Query: 123 KIDKSEALSKQALVDQLGLESITDREVCCYMISCKDSINIDAVIDWLIKH 172
+K + ++ + D V + IS + ++ +
Sbjct: 123 VANKMDMPEAAENLEAFKEKLTDDYPV--FPISAVTREGLRELLFEVANQ 170
|
| >d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]} Length = 161 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable tRNA modification GTPase TrmE (MnmE), G domain species: Escherichia coli [TaxId: 562]
Score = 35.5 bits (80), Expect = 0.001
Identities = 22/160 (13%), Positives = 50/160 (31%), Gaps = 3/160 (1%)
Query: 13 MELSLIGLQNAGKTSLVNTIA-TGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRFR 71
M++ + G NAGK+SL+N +A I ++ + + L +
Sbjct: 2 MKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRE 61
Query: 72 TMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALS 131
E G+ ++ ADR + + + +
Sbjct: 62 ASDEVERIGIERAWQEIEQADRVLFMVDGTTTDAVDPAEIWPEFIARLPAKLPITVVRNK 121
Query: 132 KQALVDQLGLESITDREVCCYMISCKDSINIDAVIDWLIK 171
+ LG+ + + +S + +D + + L +
Sbjct: 122 ADITGETLGMSEVNGHAL--IRLSARTGEGVDVLRNHLKQ 159
|
| >d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]} Length = 196 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Cow (Bos taurus), mitochondrial [TaxId: 9913]
Score = 35.0 bits (80), Expect = 0.002
Identities = 33/196 (16%), Positives = 64/196 (32%), Gaps = 37/196 (18%)
Query: 10 KQEMELSLIGLQNAGKTSLVNTI----ATGGYSEDMIPTVGFNMRKVTKGNVTIK----- 60
K + + IG + GKT+L I A GG ++ N + +TI
Sbjct: 1 KPHVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVE 60
Query: 61 ---------LWDLGGQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPS 111
D G + + + VV A D P+ ++ H LL +
Sbjct: 61 YSTAARHYAHTDCPGHADYVKNMITGTAPLDGCILVVAANDG---PMPQTREHLLLAR-Q 116
Query: 112 LSGIPLLVLGNKIDKSEA-----LSKQALVDQLGLESITDREVCCYMISCKDSI------ 160
+ ++V NK D + L + + + L E + S ++
Sbjct: 117 IGVEHVVVYVNKADAVQDSEMVELVELEIRELLTEFGYKGEETPIIVGSALCALEQRDPE 176
Query: 161 ----NIDAVIDWLIKH 172
++ ++D + +
Sbjct: 177 LGLKSVQKLLDAVDTY 192
|
| >d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]} Length = 188 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Escherichia coli [TaxId: 562]
Score = 35.1 bits (79), Expect = 0.002
Identities = 27/170 (15%), Positives = 59/170 (34%), Gaps = 14/170 (8%)
Query: 13 MELSLIGLQNAGKTSLVNTIA------------TGGYSEDMIPTVGFNMRKVTKGNVTIK 60
+E++ G NAGK+S +NT+ ++ G +
Sbjct: 17 IEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVADGKRLVDLPGYGYAE 76
Query: 61 LWDLGGQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVL 120
+ + ++ R + E + S VV R + ++ E + +++ + LL
Sbjct: 77 VPEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAVDSNIAVLVLLTK 136
Query: 121 GNKIDKSEALSKQALVDQLGLESITDREVCCYMISCKDSINIDAVIDWLI 170
+K+ ++ +V + L D +V S +D + L
Sbjct: 137 ADKLASGARKAQLNMVREAVLAFNGDVQV--ETFSSLKKQGVDKLRQKLD 184
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 177 | |||
| d1zd9a1 | 164 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 100.0 | |
| d1ksha_ | 165 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 100.0 | |
| d1fzqa_ | 176 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 100.0 | |
| d1moza_ | 182 | ADP-ribosylation factor {Baker's yeast (Saccharomy | 100.0 | |
| d1e0sa_ | 173 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 100.0 | |
| d2gjsa1 | 168 | Rad {Human (Homo sapiens) [TaxId: 9606]} | 100.0 | |
| d2fn4a1 | 173 | r-Ras {Human (Homo sapiens) [TaxId: 9606]} | 100.0 | |
| d1i2ma_ | 170 | Ran {Human (Homo sapiens) [TaxId: 9606]} | 100.0 | |
| d1c1ya_ | 167 | Rap1A {Human (Homo sapiens) [TaxId: 9606]} | 100.0 | |
| d1u8za_ | 168 | Ras-related protein RalA {Cotton-top tamarin (Sagu | 100.0 | |
| d1kmqa_ | 177 | RhoA {Human (Homo sapiens) [TaxId: 9606]} | 100.0 | |
| d2erxa1 | 171 | di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 100.0 | |
| d1xtqa1 | 167 | GTP-binding protein RheB {Human (Homo sapiens) [Ta | 100.0 | |
| d2erya1 | 171 | r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 100.0 | |
| d3raba_ | 169 | Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | 100.0 | |
| d1ctqa_ | 166 | cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9 | 100.0 | |
| d1kaoa_ | 167 | Rap2a {Human (Homo sapiens) [TaxId: 9606]} | 100.0 | |
| d1x1ra1 | 169 | Ras-related protein M-Ras (XRas) {Mouse (Mus muscu | 100.0 | |
| d2atxa1 | 185 | RhoQ {Human (Homo sapiens) [TaxId: 9606]} | 100.0 | |
| d1z2aa1 | 164 | Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | 100.0 | |
| d2ew1a1 | 171 | Rab30 {Human (Homo sapiens) [TaxId: 9606]} | 100.0 | |
| d1z0ja1 | 167 | Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | 100.0 | |
| d2bmea1 | 174 | Rab4a {Human (Homo sapiens) [TaxId: 9606]} | 100.0 | |
| d2atva1 | 168 | Ras-like estrogen-regulated growth inhibitor, RERG | 100.0 | |
| d1yzqa1 | 164 | Rab6 {Human (Homo sapiens) [TaxId: 9606]} | 100.0 | |
| d1mh1a_ | 183 | Rac {Human (Homo sapiens) [TaxId: 9606]} | 100.0 | |
| d1z08a1 | 167 | Rab21 {Human (Homo sapiens) [TaxId: 9606]} | 100.0 | |
| d1z0fa1 | 166 | Rab14 {Human (Homo sapiens) [TaxId: 9606]} | 100.0 | |
| d2f7sa1 | 186 | Rab27b {Human (Homo sapiens) [TaxId: 9606]} | 100.0 | |
| d2ngra_ | 191 | CDC42 {Human (Homo sapiens) [TaxId: 9606]} | 100.0 | |
| d1ek0a_ | 170 | Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T | 100.0 | |
| d1r2qa_ | 170 | Rab5a {Human (Homo sapiens) [TaxId: 9606]} | 100.0 | |
| d1r8sa_ | 160 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 100.0 | |
| d2f9la1 | 175 | Rab11b {Human (Homo sapiens) [TaxId: 9606]} | 100.0 | |
| d1ky3a_ | 175 | Rab-related protein ypt7p {Baker's yeast (Saccharo | 100.0 | |
| d1x3sa1 | 177 | Rab18 {Human (Homo sapiens) [TaxId: 9606]} | 100.0 | |
| d1zj6a1 | 177 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 100.0 | |
| d2bcgy1 | 194 | GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi | 100.0 | |
| d2a5ja1 | 173 | Rab2b {Human (Homo sapiens) [TaxId: 9606]} | 100.0 | |
| d1g16a_ | 166 | Rab-related protein Sec4 {Baker's yeast (Saccharom | 100.0 | |
| d1m7ba_ | 179 | RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | 100.0 | |
| d1vg8a_ | 184 | Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | 99.98 | |
| d2fu5c1 | 173 | Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | 99.98 | |
| d2g6ba1 | 170 | Rab26 {Human (Homo sapiens) [TaxId: 9606]} | 99.97 | |
| d2g3ya1 | 172 | GTP-binding protein GEM {Human (Homo sapiens) [Tax | 99.97 | |
| d1upta_ | 169 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 99.97 | |
| d1wmsa_ | 174 | Rab9a {Human (Homo sapiens) [TaxId: 9606]} | 99.97 | |
| d2bmja1 | 175 | Centaurin gamma 1, G domain {Human (Homo sapiens) | 99.97 | |
| d1z06a1 | 165 | Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | 99.97 | |
| d2qtvb1 | 166 | SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta | 99.96 | |
| d1f6ba_ | 186 | SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: | 99.96 | |
| d2bcjq2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 99.95 | |
| d1wf3a1 | 178 | GTPase Era, N-terminal domain {Thermus thermophilu | 99.95 | |
| d1svsa1 | 195 | Transducin (alpha subunit) {Rat (Rattus norvegicus | 99.95 | |
| d2gj8a1 | 161 | Probable tRNA modification GTPase TrmE (MnmE), G d | 99.95 | |
| d1wb1a4 | 179 | Elongation factor SelB, N-terminal domain {Methano | 99.95 | |
| d1zcba2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 99.94 | |
| d1xzpa2 | 160 | TrmE GTPase domain {Thermotoga maritima [TaxId: 23 | 99.94 | |
| d1mkya1 | 171 | Probable GTPase Der, N-terminal and middle domains | 99.94 | |
| d1udxa2 | 180 | Obg GTP-binding protein middle domain {Thermus the | 99.93 | |
| d1mkya2 | 186 | Probable GTPase Der, N-terminal and middle domains | 99.93 | |
| d2cxxa1 | 184 | GTP-binding protein engB {Pyrococcus horikoshii [T | 99.93 | |
| d1azta2 | 221 | Transducin (alpha subunit) {Cow (Bos taurus) [TaxI | 99.93 | |
| d1svia_ | 195 | Probable GTPase EngB {Bacillus subtilis [TaxId: 14 | 99.92 | |
| d1kk1a3 | 195 | Initiation factor eIF2 gamma subunit, N-terminal ( | 99.92 | |
| d2qn6a3 | 205 | Initiation factor eIF2 gamma subunit, N-terminal ( | 99.91 | |
| d2fh5b1 | 207 | Signal recognition particle receptor beta-subunit | 99.91 | |
| d1lnza2 | 185 | Obg GTP-binding protein middle domain {Bacillus su | 99.91 | |
| d1d2ea3 | 196 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 99.91 | |
| d1g7sa4 | 227 | Initiation factor IF2/eIF5b, N-terminal (G) domain | 99.9 | |
| d2c78a3 | 204 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 99.88 | |
| d1zunb3 | 222 | Sulfate adenylate transferase subunit cysN/C, EF-T | 99.87 | |
| d1egaa1 | 179 | GTPase Era, N-terminal domain {Escherichia coli [T | 99.85 | |
| d1nrjb_ | 209 | Signal recognition particle receptor beta-subunit | 99.84 | |
| d2bv3a2 | 276 | Elongation factor G (EF-G), N-terminal (G) domain | 99.84 | |
| d2dy1a2 | 267 | Elongation factor G (EF-G), N-terminal (G) domain | 99.81 | |
| d1f60a3 | 239 | Elongation factor eEF-1alpha, N-terminal (G) domai | 99.81 | |
| d1jnya3 | 224 | Elongation factor eEF-1alpha, N-terminal (G) domai | 99.81 | |
| d1puia_ | 188 | Probable GTPase EngB {Escherichia coli [TaxId: 562 | 99.8 | |
| d1r5ba3 | 245 | Eukaryotic peptide chain release factor ERF2, G do | 99.79 | |
| d1tq4a_ | 400 | Interferon-inducible GTPase {Mouse (Mus musculus) | 99.73 | |
| d1h65a_ | 257 | Chloroplast protein translocon GTPase Toc34 {Garde | 99.66 | |
| d1n0ua2 | 341 | Elongation factor 2 (eEF-2), N-terminal (G) domain | 99.61 | |
| d1yrba1 | 244 | ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss | 99.6 | |
| d2p67a1 | 327 | LAO/AO transport system kinase ArgK {Escherichia c | 99.6 | |
| d2qm8a1 | 323 | Metallochaperone MeaB {Methylobacterium extorquens | 99.54 | |
| d2akab1 | 299 | Dynamin G domain {Rat (Rattus norvegicus) [TaxId: | 99.28 | |
| d1jwyb_ | 306 | Dynamin G domain {Dictyostelium discoideum [TaxId: | 99.23 | |
| d1ni3a1 | 296 | YchF GTP-binding protein N-terminal domain {Fissio | 99.19 | |
| d1jala1 | 278 | YchF GTP-binding protein N-terminal domain {Haemop | 99.14 | |
| d1wxqa1 | 319 | GTP-binding protein PH0525 {Pyrococcus horikoshii | 99.14 | |
| d1puja_ | 273 | Probable GTPase YlqF {Bacillus subtilis [TaxId: 14 | 98.76 | |
| d1puja_ | 273 | Probable GTPase YlqF {Bacillus subtilis [TaxId: 14 | 98.69 | |
| d1u0la2 | 225 | Probable GTPase EngC (YjeQ), C-terminal domain {Th | 98.57 | |
| d1u0la2 | 225 | Probable GTPase EngC (YjeQ), C-terminal domain {Th | 98.56 | |
| d1vmaa2 | 213 | GTPase domain of the signal recognition particle r | 98.46 | |
| d1nija1 | 222 | Hypothetical protein YjiA, N-terminal domain {Esch | 98.45 | |
| d2qy9a2 | 211 | GTPase domain of the signal recognition particle r | 98.39 | |
| d1t9ha2 | 231 | Probable GTPase EngC (YjeQ), C-terminal domain {Ba | 98.38 | |
| d1ls1a2 | 207 | GTPase domain of the signal sequence recognition p | 98.32 | |
| d1t9ha2 | 231 | Probable GTPase EngC (YjeQ), C-terminal domain {Ba | 98.31 | |
| d1okkd2 | 207 | GTPase domain of the signal recognition particle r | 98.27 | |
| d1ye8a1 | 178 | Hypothetical kinase-like protein Aq_1292 {Aquifex | 98.26 | |
| d1j8yf2 | 211 | GTPase domain of the signal sequence recognition p | 98.23 | |
| d1y63a_ | 174 | Probable kinase LmjF30.1890 {Leishmania major [Tax | 98.2 | |
| d1ak2a1 | 190 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 98.1 | |
| d1lw7a2 | 192 | Transcriptional regulator NadR, ribosylnicotinamid | 98.08 | |
| d1rkba_ | 173 | Adenylate kinase {Human (Homo sapiens), isoenzyme | 98.04 | |
| d1bifa1 | 213 | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphata | 98.0 | |
| d1qf9a_ | 194 | UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4 | 98.0 | |
| d1zaka1 | 189 | Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | 97.99 | |
| d2pmka1 | 241 | Haemolysin B ATP-binding protein {Escherichia coli | 97.97 | |
| d1np6a_ | 170 | Molybdopterin-guanine dinucleotide biosynthesis pr | 97.95 | |
| d1zina1 | 182 | Adenylate kinase {Bacillus stearothermophilus [Tax | 97.95 | |
| d1mv5a_ | 242 | Multidrug resistance ABC transporter LmrA, C-termi | 97.92 | |
| d2ak3a1 | 189 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 97.92 | |
| d1s3ga1 | 182 | Adenylate kinase {Bacillus globisporus [TaxId: 145 | 97.89 | |
| d2cdna1 | 181 | Adenylate kinase {Mycobacterium tuberculosis [TaxI | 97.89 | |
| d3b60a1 | 253 | Multidrug resistance ABC transporter MsbA, C-termi | 97.88 | |
| d1ly1a_ | 152 | Polynucleotide kinase, kinase domain {Bacteriophag | 97.88 | |
| d1jj7a_ | 251 | Peptide transporter Tap1, C-terminal ABC domain {H | 97.87 | |
| d1akya1 | 180 | Adenylate kinase {Baker's yeast (Saccharomyces cer | 97.86 | |
| d1xjca_ | 165 | Molybdopterin-guanine dinucleotide biosynthesis pr | 97.86 | |
| d1l2ta_ | 230 | MJ0796 {Archaeon Methanococcus jannaschii [TaxId: | 97.85 | |
| d2awna2 | 232 | Maltose transport protein MalK, N-terminal domain | 97.85 | |
| d1r0wa_ | 281 | Cystic fibrosis transmembrane conductance regulato | 97.84 | |
| d1e4va1 | 179 | Adenylate kinase {Escherichia coli [TaxId: 562]} | 97.84 | |
| d1sgwa_ | 200 | Putative ABC transporter PF0895 {Pyrococcus furios | 97.83 | |
| d2bdta1 | 176 | Hypothetical protein BH3686 {Bacillus halodurans [ | 97.78 | |
| d1f5na2 | 277 | Interferon-induced guanylate-binding protein 1 (GB | 97.78 | |
| d1v43a3 | 239 | Hypothetical protein PH0022, N-terminal domain {Py | 97.76 | |
| d3dhwc1 | 240 | Methionine import ATP-binding protein MetN {Escher | 97.75 | |
| d1teva_ | 194 | UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606] | 97.75 | |
| d1g2912 | 240 | Maltose transport protein MalK, N-terminal domain | 97.75 | |
| d2i3ba1 | 189 | Cancer-related NTPase, C1orf57 {Human (Homo sapien | 97.74 | |
| d2hyda1 | 255 | Putative multidrug export ATP-binding/permease pro | 97.74 | |
| d1kaga_ | 169 | Shikimate kinase (AroK) {Escherichia coli [TaxId: | 97.74 | |
| d1rz3a_ | 198 | Hypothetical protein rbstp0775 {Bacillus stearothe | 97.74 | |
| d1jbka_ | 195 | ClpB, AAA+ modules {Escherichia coli [TaxId: 562]} | 97.72 | |
| d1yj5a2 | 172 | 5' polynucleotide kinase-3' phosphatase, C-termina | 97.72 | |
| d1m8pa3 | 183 | ATP sulfurylase C-terminal domain {Fungus (Penicil | 97.7 | |
| d1l7vc_ | 231 | ABC transporter involved in vitamin B12 uptake, Bt | 97.7 | |
| d1ji0a_ | 240 | Branched chain aminoacid ABC transporter {Thermoto | 97.69 | |
| d3d31a2 | 229 | Sulfate/molybdate ABC transporter, ATP-binding pro | 97.69 | |
| d2iyva1 | 165 | Shikimate kinase (AroK) {Mycobacterium tuberculosi | 97.67 | |
| d1vpla_ | 238 | Putative ABC transporter TM0544 {Thermotoga mariti | 97.67 | |
| d1b0ua_ | 258 | ATP-binding subunit of the histidine permease {Sal | 97.66 | |
| d1d2na_ | 246 | Hexamerization domain of N-ethylmalemide-sensitive | 97.64 | |
| d1oxxk2 | 242 | Glucose transport protein GlcV, N-terminal domain | 97.63 | |
| d1g6oa_ | 323 | Hexameric traffic ATPase, HP0525 {Helicobacter pyl | 97.62 | |
| d1viaa_ | 161 | Shikimate kinase (AroK) {Campylobacter jejuni [Tax | 97.61 | |
| d1khta_ | 190 | Adenylate kinase {Archaeon Methanococcus voltae [T | 97.6 | |
| d2onka1 | 240 | Molybdate/tungstate import ATP-binding protein Wtp | 97.59 | |
| d1g6ha_ | 254 | MJ1267 {Archaeon Methanococcus jannaschii [TaxId: | 97.58 | |
| d1ukza_ | 196 | Uridylate kinase {Baker's yeast (Saccharomyces cer | 97.58 | |
| d1knqa_ | 171 | Gluconate kinase {Escherichia coli [TaxId: 562]} | 97.57 | |
| d1zp6a1 | 176 | Hypothetical protein Atu3015 {Agrobacterium tumefa | 97.54 | |
| d3adka_ | 194 | Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | 97.53 | |
| d1gkya_ | 186 | Guanylate kinase {Baker's yeast (Saccharomyces cer | 97.52 | |
| d1znwa1 | 182 | Guanylate kinase {Mycobacterium tuberculosis [TaxI | 97.51 | |
| d1qhxa_ | 178 | Chloramphenicol phosphotransferase {Streptomyces v | 97.5 | |
| d1gvnb_ | 273 | Plasmid maintenance system epsilon/zeta, toxin zet | 97.49 | |
| d1e6ca_ | 170 | Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax | 97.46 | |
| d1uj2a_ | 213 | Uridine-cytidine kinase 2 {Human (Homo sapiens) [T | 97.46 | |
| d1x6va3 | 195 | Adenosine-5'phosphosulfate kinase (APS kinase) {Hu | 97.45 | |
| d1kgda_ | 178 | Guanylate kinase-like domain of Cask {Human (Homo | 97.43 | |
| d1qvra2 | 387 | ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2 | 97.42 | |
| d1lvga_ | 190 | Guanylate kinase {Mouse (Mus musculus) [TaxId: 100 | 97.42 | |
| d1uf9a_ | 191 | Dephospho-CoA kinase {Thermus thermophilus [TaxId: | 97.42 | |
| d1q3ta_ | 223 | CMP kinase {Streptococcus pneumoniae [TaxId: 1313] | 97.41 | |
| g1f2t.1 | 292 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 97.37 | |
| d1s96a_ | 205 | Guanylate kinase {Escherichia coli [TaxId: 562]} | 97.36 | |
| d1ixsb2 | 239 | Holliday junction helicase RuvB {Thermus thermophi | 97.34 | |
| d1in4a2 | 238 | Holliday junction helicase RuvB {Thermotoga mariti | 97.33 | |
| d1nksa_ | 194 | Adenylate kinase {Archaeon Sulfolobus acidocaldari | 97.32 | |
| d1g3qa_ | 237 | Cell division regulator MinD {Archaeon Pyrococcus | 97.32 | |
| d1r6bx2 | 268 | ClpA, an Hsp100 chaperone, AAA+ modules {Escherich | 97.32 | |
| d1htwa_ | 158 | Hypothetical protein HI0065 {Haemophilus influenza | 97.32 | |
| d2vp4a1 | 197 | Deoxyribonucleoside kinase {Fruit fly (Drosophila | 97.29 | |
| d1ofha_ | 309 | HslU {Haemophilus influenzae [TaxId: 727]} | 97.17 | |
| d1iqpa2 | 231 | Replication factor C {Archaeon Pyrococcus furiosus | 97.17 | |
| d1sxja2 | 253 | Replication factor C1 {Baker's yeast (Saccharomyce | 97.12 | |
| d1m7ga_ | 208 | Adenosine-5'phosphosulfate kinase (APS kinase) {Fu | 97.12 | |
| d2fnaa2 | 283 | Archaeal ATPase SSO1545 {Sulfolobus solfataricus [ | 97.11 | |
| d1fnna2 | 276 | CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T | 97.09 | |
| d1ckea_ | 225 | CMP kinase {Escherichia coli [TaxId: 562]} | 97.03 | |
| d1ixza_ | 247 | AAA domain of cell division protein FtsH {Thermus | 97.03 | |
| d1lv7a_ | 256 | AAA domain of cell division protein FtsH {Escheric | 97.0 | |
| d1sxjd2 | 237 | Replication factor C2 {Baker's yeast (Saccharomyce | 96.97 | |
| d1sq5a_ | 308 | Pantothenate kinase PanK {Escherichia coli [TaxId: | 96.96 | |
| d1sxjb2 | 224 | Replication factor C4 {Baker's yeast (Saccharomyce | 96.94 | |
| d1e32a2 | 258 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 96.92 | |
| d1w5sa2 | 287 | CDC6-like protein APE0152, N-terminal domain {Aero | 96.88 | |
| d1sxje2 | 252 | Replication factor C5 {Baker's yeast (Saccharomyce | 96.87 | |
| d1odfa_ | 286 | Hypothetical protein Ygr205W {Baker's yeast (Sacch | 96.86 | |
| d1sxjc2 | 227 | Replication factor C3 {Baker's yeast (Saccharomyce | 96.86 | |
| d1g41a_ | 443 | HslU {Haemophilus influenzae [TaxId: 727]} | 96.85 | |
| g1ii8.1 | 369 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 96.82 | |
| d1gsia_ | 208 | Thymidylate kinase {Mycobacterium tuberculosis [Ta | 96.78 | |
| d1vhta_ | 208 | Dephospho-CoA kinase {Escherichia coli [TaxId: 562 | 96.75 | |
| d1jjva_ | 205 | Dephospho-CoA kinase {Haemophilus influenzae [TaxI | 96.75 | |
| d1n0wa_ | 242 | DNA repair protein Rad51, catalytic domain {Human | 96.7 | |
| d1r7ra3 | 265 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 96.7 | |
| d4tmka_ | 210 | Thymidylate kinase {Escherichia coli [TaxId: 562]} | 96.59 | |
| g1xew.1 | 329 | Smc head domain {Pyrococcus furiosus [TaxId: 2261] | 96.56 | |
| d1g8pa_ | 333 | ATPase subunit of magnesium chelatase, BchI {Rhodo | 96.55 | |
| d1svma_ | 362 | Papillomavirus large T antigen helicase domain {Si | 96.53 | |
| d1kkma_ | 176 | HPr kinase HprK C-terminal domain {Lactobacillus c | 96.5 | |
| d1szpa2 | 251 | DNA repair protein Rad51, catalytic domain {Baker' | 96.47 | |
| d1knxa2 | 177 | HPr kinase HprK C-terminal domain {Mycoplasma pneu | 96.45 | |
| d1pzna2 | 254 | DNA repair protein Rad51, catalytic domain {Archae | 96.42 | |
| d1qhla_ | 222 | Cell division protein MukB {Escherichia coli [TaxI | 96.41 | |
| d1e69a_ | 308 | Smc head domain {Thermotoga maritima [TaxId: 2336] | 96.37 | |
| d1p9ra_ | 401 | Extracellular secretion NTPase EpsE {Vibrio choler | 96.36 | |
| d1tf7a2 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 96.32 | |
| d1nn5a_ | 209 | Thymidylate kinase {Human (Homo sapiens) [TaxId: 9 | 96.28 | |
| d2a5yb3 | 277 | CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI | 96.26 | |
| d1ko7a2 | 169 | HPr kinase HprK C-terminal domain {Staphylococcus | 96.2 | |
| d1a7ja_ | 288 | Phosphoribulokinase {Rhodobacter sphaeroides [TaxI | 96.19 | |
| d1p5zb_ | 241 | Deoxycytidine kinase {Human (Homo sapiens) [TaxId: | 96.19 | |
| d1um8a_ | 364 | ClpX {Helicobacter pylori [TaxId: 210]} | 96.13 | |
| d1r6bx3 | 315 | ClpA, an Hsp100 chaperone, AAA+ modules {Escherich | 96.12 | |
| d1v5wa_ | 258 | Meiotic recombination protein DMC1/LIM15 homolog { | 96.11 | |
| d1w44a_ | 321 | NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} | 96.1 | |
| d2i1qa2 | 258 | DNA repair protein Rad51, catalytic domain {Archae | 96.08 | |
| d2ocpa1 | 241 | Deoxyguanosine kinase {Human (Homo sapiens) [TaxId | 96.07 | |
| d1w1wa_ | 427 | Smc head domain {Baker's yeast (Saccharomyces cere | 96.06 | |
| d1deka_ | 241 | Deoxynucleoside monophosphate kinase {Bacteriophag | 95.79 | |
| d1tf7a1 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 95.75 | |
| d1a5ta2 | 207 | delta prime subunit of DNA polymerase III, N-domai | 95.74 | |
| d1njfa_ | 239 | delta prime subunit of DNA polymerase III, N-domai | 95.71 | |
| d1cr2a_ | 277 | Gene 4 protein (g4p, DNA primase), helicase domain | 95.67 | |
| d1tuea_ | 205 | Replication protein E1 helicase domain {Human papi | 95.64 | |
| d1l8qa2 | 213 | Chromosomal replication initiation factor DnaA {Aq | 95.61 | |
| d1osna_ | 331 | Thymidine kinase {Varicella-zoster virus [TaxId: 1 | 95.6 | |
| d1tmka_ | 214 | Thymidylate kinase {Baker's yeast (Saccharomyces c | 95.54 | |
| d1p6xa_ | 333 | Thymidine kinase {Equine herpesvirus type 4 [TaxId | 95.46 | |
| d1e2ka_ | 329 | Thymidine kinase {Herpes simplex virus type 1, dif | 95.39 | |
| d1hyqa_ | 232 | Cell division regulator MinD {Archaeon Archaeoglob | 95.36 | |
| d1nlfa_ | 274 | Hexameric replicative helicase repA {Escherichia c | 95.36 | |
| d1e9ra_ | 433 | Bacterial conjugative coupling protein TrwB {Esche | 95.27 | |
| d1uaaa1 | 306 | DEXX box DNA helicase {Escherichia coli, RepD [Tax | 95.18 | |
| d1pjra1 | 318 | DEXX box DNA helicase {Bacillus stearothermophilus | 95.06 | |
| d1g8fa3 | 122 | ATP sulfurylase C-terminal domain {Baker's yeast ( | 95.01 | |
| d1xpua3 | 289 | Transcription termination factor Rho, ATPase domai | 94.9 | |
| d1mo6a1 | 269 | RecA protein, ATPase-domain {Mycobacterium tubercu | 94.79 | |
| d1u0ja_ | 267 | Rep 40 protein helicase domain {Adeno-associated v | 94.77 | |
| d1w36d1 | 359 | Exodeoxyribonuclease V alpha chain (RecD) {Escheri | 94.54 | |
| d1qvra3 | 315 | ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2 | 94.51 | |
| d1xp8a1 | 268 | RecA protein, ATPase-domain {Deinococcus radiodura | 94.33 | |
| d1u94a1 | 263 | RecA protein, ATPase-domain {Escherichia coli [Tax | 94.1 | |
| d1wb9a2 | 234 | DNA repair protein MutS, the C-terminal domain {Es | 93.78 | |
| d1ewqa2 | 224 | DNA repair protein MutS, the C-terminal domain {Th | 93.58 | |
| d1ny5a2 | 247 | Transcriptional activator sigm54 (NtrC1), C-termin | 93.56 | |
| d2jdid3 | 276 | Central domain of beta subunit of F1 ATP synthase | 93.4 | |
| d1c9ka_ | 180 | Adenosylcobinamide kinase/adenosylcobinamide phosp | 93.24 | |
| d1cp2a_ | 269 | Nitrogenase iron protein {Clostridium pasteurianum | 93.21 | |
| d2b8ta1 | 139 | Thymidine kinase, TK1, N-terminal domain {Ureaplas | 91.85 | |
| d2gnoa2 | 198 | gamma subunit of DNA polymerase III, N-domain {The | 91.82 | |
| d1ihua2 | 279 | Arsenite-translocating ATPase ArsA {Escherichia co | 91.38 | |
| g1qhh.1 | 623 | DEXX box DNA helicase {Bacillus stearothermophilus | 91.27 | |
| d1a1va1 | 136 | HCV helicase domain {Human hepatitis C virus (HCV) | 91.2 | |
| d2jdia3 | 285 | Central domain of alpha subunit of F1 ATP synthase | 90.91 | |
| d1ihua1 | 296 | Arsenite-translocating ATPase ArsA {Escherichia co | 90.81 | |
| d2afhe1 | 289 | Nitrogenase iron protein {Azotobacter vinelandii [ | 90.41 | |
| d1y7ta1 | 154 | Malate dehydrogenase {Thermus thermophilus [TaxId: | 90.3 | |
| d1byia_ | 224 | Dethiobiotin synthetase {Escherichia coli [TaxId: | 89.93 | |
| d1fx0a3 | 276 | Central domain of alpha subunit of F1 ATP synthase | 89.24 | |
| d2olra1 | 313 | Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo | 89.11 | |
| d7mdha1 | 175 | Malate dehydrogenase {Sorghum (Sorghum vulgare), c | 88.97 | |
| d1yksa1 | 140 | YFV helicase domain {Yellow fever virus [TaxId: 11 | 88.76 | |
| d1j3ba1 | 318 | Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo | 88.74 | |
| d1ii2a1 | 323 | Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo | 88.1 | |
| d1wp9a1 | 200 | putative ATP-dependent RNA helicase PF2015 {Pyroco | 86.77 | |
| d2eyqa3 | 233 | Transcription-repair coupling factor, TRCF {Escher | 86.05 | |
| d1xbta1 | 133 | Thymidine kinase, TK1, N-terminal domain {Human (H | 83.35 | |
| d5mdha1 | 154 | Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982 | 82.52 | |
| d1gm5a3 | 264 | RecG helicase domain {Thermotoga maritima [TaxId: | 82.22 | |
| d2p6ra3 | 202 | Hel308 helicase {Archaeoglobus fulgidus [TaxId: 22 | 81.86 | |
| d1xx6a1 | 141 | Thymidine kinase, TK1, N-terminal domain {Clostrid | 81.14 | |
| d1p3da1 | 96 | UDP-N-acetylmuramate-alanine ligase MurC {Haemophi | 80.39 |
| >d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL8A [TaxId: 9606]
Probab=100.00 E-value=6.7e-38 Score=208.04 Aligned_cols=164 Identities=65% Similarity=1.157 Sum_probs=151.7
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEeCCEEEEEEecCCchhhHHhHHHHhcCCCEEEEEEeC
Q 030429 11 QEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDA 90 (177)
Q Consensus 11 ~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~ 90 (177)
+.+||+++|++|||||||++++.++.+...+.+|.+.....++.+++.+++||+||+..+...+..++..++++++|+|+
T Consensus 1 ~e~ki~i~G~~~~GKTsLl~~l~~~~~~~~~~~T~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~ 80 (164)
T d1zd9a1 1 EEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRKITKGNVTIKLWDIGGQPRFRSMWERYCRGVSAIVYMVDA 80 (164)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEETTEEEEEEEECCSHHHHTTHHHHHTTCSEEEEEEET
T ss_pred CeEEEEEECCCCCCHHHHHHHHHcCCCCCcccccceeeeeeeeeeeEEEEEeeccccccccccccccccccchhhccccc
Confidence 46899999999999999999999999998899999999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccCHHHHHHHhCcccccCCceeEEEeeecCCCChHHHHHHHH
Q 030429 91 ADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCKDSINIDAVIDWLI 170 (177)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~ 170 (177)
++++++.+...++..+.......+.|+++|+||.|+.+.....++.+.++........++++++||++|.|++++|++|+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~pi~lv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~e~Sa~~g~gv~e~~~~l~ 160 (164)
T d1zd9a1 81 ADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGALDEKELIEKMNLSAIQDREICCYSISCKEKDNIDITLQWLI 160 (164)
T ss_dssp TCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHHHHHH
T ss_pred ccccccchhhhhhhhhhhhhcccCCcEEEEEeccccchhhhHHHHHHHHHHHHHHhCCCEEEEEeCcCCcCHHHHHHHHH
Confidence 99999999999999998877777899999999999988777888888888777777788999999999999999999999
Q ss_pred HHhh
Q 030429 171 KHSK 174 (177)
Q Consensus 171 ~~~~ 174 (177)
+.++
T Consensus 161 ~~~k 164 (164)
T d1zd9a1 161 QHSK 164 (164)
T ss_dssp HTCC
T ss_pred HccC
Confidence 8653
|
| >d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL2 [TaxId: 10090]
Probab=100.00 E-value=1.3e-36 Score=201.94 Aligned_cols=165 Identities=32% Similarity=0.601 Sum_probs=146.6
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEeCCEEEEEEecCCchhhHHhHHHHhcCCCEEEEEEeC
Q 030429 11 QEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDA 90 (177)
Q Consensus 11 ~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~ 90 (177)
+.+||+++|++|||||||+++|.+..+ ....+|.+.....++.+++.+.+||+||++.++..+..++..++++++|+|+
T Consensus 1 k~~ki~ivG~~~~GKTsLi~~l~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~ 79 (165)
T d1ksha_ 1 RELRLLMLGLDNAGKTTILKKFNGEDV-DTISPTLGFNIKTLEHRGFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDS 79 (165)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHTTCCC-SSCCCCSSEEEEEEEETTEEEEEEEECCSHHHHTTGGGGCTTCSEEEEEEET
T ss_pred CcEEEEEECCCCCCHHHHHHHHcCCCC-CcccceEeeeeeeccccccceeeeecCcchhhhhHHHhhhhhhhcceeeeec
Confidence 468999999999999999999987655 4567888888888999999999999999999998889999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccCHHHHHHHhCcccccCCceeEEEeeecCCCChHHHHHHHH
Q 030429 91 ADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCKDSINIDAVIDWLI 170 (177)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~ 170 (177)
++..++.....++..........+.|+++|+||+|+.+.....+..+.+.......+.+++++|||++|.|++++|++|.
T Consensus 80 ~d~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~e~~~~l~ 159 (165)
T d1ksha_ 80 ADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGALSCNAIQEALELDSIRSHHWRIQGCSAVTGEDLLPGIDWLL 159 (165)
T ss_dssp TCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHHHHHH
T ss_pred ccchhHHHHHHhhhhhhhhcccCCCceEEEEeccccccccCHHHHHHHHHhhhhhcCCCEEEEEECCCCCCHHHHHHHHH
Confidence 99999999999988887776667899999999999988777777777777666666778899999999999999999999
Q ss_pred HHhhhc
Q 030429 171 KHSKTA 176 (177)
Q Consensus 171 ~~~~~~ 176 (177)
+.+.++
T Consensus 160 ~~i~~r 165 (165)
T d1ksha_ 160 DDISSR 165 (165)
T ss_dssp HHHHTC
T ss_pred HHHHcC
Confidence 988754
|
| >d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL3 [TaxId: 10090]
Probab=100.00 E-value=7.4e-37 Score=205.10 Aligned_cols=167 Identities=33% Similarity=0.583 Sum_probs=147.2
Q ss_pred cccccceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEeCCEEEEEEecCCchhhHHhHHHHhcCCCEEE
Q 030429 6 SLFFKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAIL 85 (177)
Q Consensus 6 ~~~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i 85 (177)
.-..++.+||+++|++|||||||++++.++.+. ...++.+.+...+..+++.+.+||++|++.+...+..++..+|+++
T Consensus 10 ~~~~~~~~kI~vvG~~~vGKSsLi~~l~~~~~~-~~~~~~~~~~~~i~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii 88 (176)
T d1fzqa_ 10 KSAPDQEVRILLLGLDNAGKTTLLKQLASEDIS-HITPTQGFNIKSVQSQGFKLNVWDIGGQRKIRPYWRSYFENTDILI 88 (176)
T ss_dssp SSCCSSCEEEEEEESTTSSHHHHHHHHCCSCCE-EEEEETTEEEEEEEETTEEEEEEECSSCGGGHHHHHHHHTTCSEEE
T ss_pred hCCCCCEEEEEEECCCCCCHHHHHHHHhcCCCC-cceeeeeeeEEEeccCCeeEeEeeccccccchhHHHHHhhccceeE
Confidence 345677899999999999999999999977664 3445677888888899999999999999999999999999999999
Q ss_pred EEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccCHHHHHHHhCcccccCCceeEEEeeecCCCChHHH
Q 030429 86 YVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCKDSINIDAV 165 (177)
Q Consensus 86 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l 165 (177)
+|+|++++.++.+...++..+.......++|+++|+||+|+.+........+.++......+.+++++|||++|.|++++
T Consensus 89 ~v~d~~d~~s~~~~~~~~~~~~~~~~~~~~pillv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~tg~gv~e~ 168 (176)
T d1fzqa_ 89 YVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAAPASEIAEGLNLHTIRDRVWQIQSCSALTGEGVQDG 168 (176)
T ss_dssp EEEETTCGGGHHHHHHHHHHHTTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHH
T ss_pred EeeccccccchhhhhhhhhhhhhhhccCCCeEEEEEEeccccccccHHHHHHHHHHHHHHhcCCEEEEEeCCCCCCHHHH
Confidence 99999999999999999988877766678999999999999988777788888776666677889999999999999999
Q ss_pred HHHHHHHh
Q 030429 166 IDWLIKHS 173 (177)
Q Consensus 166 ~~~l~~~~ 173 (177)
|++|.+.+
T Consensus 169 ~~~l~~~i 176 (176)
T d1fzqa_ 169 MNWVCKNV 176 (176)
T ss_dssp HHHHHHTC
T ss_pred HHHHHhcC
Confidence 99998753
|
| >d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]
Probab=100.00 E-value=4.9e-37 Score=207.08 Aligned_cols=169 Identities=33% Similarity=0.573 Sum_probs=147.1
Q ss_pred ccccceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEeCCEEEEEEecCCchhhHHhHHHHhcCCCEEEE
Q 030429 7 LFFKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILY 86 (177)
Q Consensus 7 ~~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~ 86 (177)
+..++.+||+++|++|||||||++++.++.+. ...+|.+........+++.+.+||+||+..+...+..++..+|++++
T Consensus 12 ~~~~k~~KI~lvG~~~vGKTsLi~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~ii~ 90 (182)
T d1moza_ 12 WGSNKELRILILGLDGAGKTTILYRLQIGEVV-TTKPTIGFNVETLSYKNLKLNVWDLGGQTSIRPYWRCYYADTAAVIF 90 (182)
T ss_dssp TTCSSCEEEEEEEETTSSHHHHHHHTCCSEEE-EECSSTTCCEEEEEETTEEEEEEEEC----CCTTGGGTTTTEEEEEE
T ss_pred hCCCceEEEEEECCCCCCHHHHHHHHhcCCCC-ccccccceEEEEEeeCCEEEEEEecccccccchhHHhhhccceeEEE
Confidence 45677899999999999999999999866553 44577888888888999999999999999999999999999999999
Q ss_pred EEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccCHHHHHHHhCcccccCCceeEEEeeecCCCChHHHH
Q 030429 87 VVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCKDSINIDAVI 166 (177)
Q Consensus 87 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~ 166 (177)
|+|++++.++.+...|+..........+.|+++|+||+|+.+....+++.+.++........+++++|||++|+|++++|
T Consensus 91 v~d~~d~~s~~~~~~~l~~~~~~~~~~~~piliv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~e~SA~~g~gv~e~~ 170 (182)
T d1moza_ 91 VVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPGALSASEVSKELNLVELKDRSWSIVASSAIKGEGITEGL 170 (182)
T ss_dssp EEETTCTTTHHHHHHHHHHHTTSSTTSSCEEEEEEECTTSTTCCCHHHHHHHTTTTTCCSSCEEEEEEBGGGTBTHHHHH
T ss_pred EeeecccccchhHHHHHHHHHHhhccCCcceEEEEEeeccccccCHHHHHHHHHHHHHhhCCCEEEEEECCCCCCHHHHH
Confidence 99999999999999999888777666789999999999998877788888888877667777899999999999999999
Q ss_pred HHHHHHhhhc
Q 030429 167 DWLIKHSKTA 176 (177)
Q Consensus 167 ~~l~~~~~~~ 176 (177)
++|.+.++++
T Consensus 171 ~~l~~~i~~~ 180 (182)
T d1moza_ 171 DWLIDVIKEE 180 (182)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHc
Confidence 9999999875
|
| >d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF6 [TaxId: 9606]
Probab=100.00 E-value=3.4e-36 Score=201.37 Aligned_cols=167 Identities=34% Similarity=0.634 Sum_probs=148.3
Q ss_pred ccccceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEeCCEEEEEEecCCchhhHHhHHHHhcCCCEEEE
Q 030429 7 LFFKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILY 86 (177)
Q Consensus 7 ~~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~ 86 (177)
+..++.+||+++|++|||||||++++.++.+. ...+|.+..........+.+.+||+||+..++..+..++++++++++
T Consensus 7 ~~~~k~~kIvlvG~~~vGKTSli~rl~~~~~~-~~~~t~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~ii~ 85 (173)
T d1e0sa_ 7 IFGNKEMRILMLGLDAAGKTTILYKLKLGQSV-TTIPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIF 85 (173)
T ss_dssp HHTTCCEEEEEEEETTSSHHHHHHHTTCCCCE-EEEEETTEEEEEEEETTEEEEEEEESCCGGGHHHHGGGTTTCCEEEE
T ss_pred hhCCCeEEEEEECCCCCCHHHHHHHHhcCCCC-CccceeeeeEEEeeccceeeEEecCCCcchhhhHHHhhhcccceEEE
Confidence 45678899999999999999999999876653 34567788888888899999999999999999999999999999999
Q ss_pred EEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccCHHHHHHHhCcccccCCceeEEEeeecCCCChHHHH
Q 030429 87 VVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCKDSINIDAVI 166 (177)
Q Consensus 87 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~ 166 (177)
|+|+++.+++.....++............|+++|+||+|+.+.....++.+.++......+.+.+++|||++|+||+|+|
T Consensus 86 v~D~s~~~~~~~~~~~l~~~~~~~~~~~~piiiv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~e~SA~tg~gv~e~~ 165 (173)
T d1e0sa_ 86 VVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGL 165 (173)
T ss_dssp EEETTCGGGHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECBTTTTBTHHHHH
T ss_pred EEecccchhHHHHHHHHHHHhhhcccccceeeeeeecccccccccHHHHHHHHHHHHHHhCCCEEEEeeCCCCcCHHHHH
Confidence 99999999999999999988776666789999999999999887888888888877777778889999999999999999
Q ss_pred HHHHHHhh
Q 030429 167 DWLIKHSK 174 (177)
Q Consensus 167 ~~l~~~~~ 174 (177)
++|.+.++
T Consensus 166 ~~l~~~~k 173 (173)
T d1e0sa_ 166 TWLTSNYK 173 (173)
T ss_dssp HHHHHHCC
T ss_pred HHHHHhcC
Confidence 99988753
|
| >d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rad species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=4.5e-35 Score=194.99 Aligned_cols=155 Identities=15% Similarity=0.178 Sum_probs=112.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCcccee-EEEEEe--CCEEEEEEecCCchhhHHhHHHHhcCCCEEEEEEe
Q 030429 13 MELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFN-MRKVTK--GNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVD 89 (177)
Q Consensus 13 ~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~-~~~~~~--~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d 89 (177)
+||+++|++|||||||++++.+..+.... ++.+.. ...+.. ..+.+.+||++|++.+...+..+++++|++++|||
T Consensus 2 fKi~lvG~~~vGKTsLi~~~~~~~~~~~~-~~~~~~~~~~i~~~~~~~~l~i~D~~g~e~~~~~~~~~~~~~d~~ilv~d 80 (168)
T d2gjsa1 2 YKVLLLGAPGVGKSALARIFGGVEDGPEA-EAAGHTYDRSIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIVYS 80 (168)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTC----------CEEEEEEEEETTEEEEEEEEECC-------CHHHHHTSCSEEEEEEE
T ss_pred eEEEEECCCCcCHHHHHHHHhCCccCCcC-Ceeeeeecceeeccccccceeeeecccccccceecccchhhhhhhceecc
Confidence 69999999999999999999876654433 333322 223333 45789999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccC--HHH---HHHHhCcccccCCceeEEEeeecCCCChHH
Q 030429 90 AADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALS--KQA---LVDQLGLESITDREVCCYMISCKDSINIDA 164 (177)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~--~~~---~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 164 (177)
++++.+++.+..|+..+........+|+++|+||+|+.+... ..+ +.+.+ ++++++|||++|.|+++
T Consensus 81 ~t~~~s~~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~~v~~~~~~~~~~~~--------~~~~~e~Sak~~~~v~~ 152 (168)
T d2gjsa1 81 VTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSREVSVDEGRACAVVF--------DCKFIETSAALHHNVQA 152 (168)
T ss_dssp TTCHHHHHHHHHHHHHHHHHCC--CCCEEEEEECTTCGGGCCSCHHHHHHHHHHH--------TSEEEECBTTTTBSHHH
T ss_pred ccccccccccccccchhhcccccccceEEEeecccchhhhcchhHHHHHHHHHhc--------CCEEEEEeCCCCcCHHH
Confidence 999999999999999887665556789999999999876432 222 22222 24799999999999999
Q ss_pred HHHHHHHHhhhc
Q 030429 165 VIDWLIKHSKTA 176 (177)
Q Consensus 165 l~~~l~~~~~~~ 176 (177)
+|+.|.+.+..+
T Consensus 153 ~f~~l~~~i~~~ 164 (168)
T d2gjsa1 153 LFEGVVRQIRLR 164 (168)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999987654
|
| >d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=3.5e-36 Score=201.31 Aligned_cols=164 Identities=20% Similarity=0.304 Sum_probs=131.9
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCcccee-EEEEEeC--CEEEEEEecCCchhhHHhHHHHhcCCCEEE
Q 030429 9 FKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFN-MRKVTKG--NVTIKLWDLGGQRRFRTMWERYCRGVSAIL 85 (177)
Q Consensus 9 ~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~-~~~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i 85 (177)
+.+.+||+++|++|||||||++++.++.+...+.++.... ...+..+ .+.+.+||++|+.++...+..+++++|+++
T Consensus 3 ~~~~~Kv~lvG~~~vGKTsLi~r~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~i 82 (173)
T d2fn4a1 3 PSETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYTKICSVDGIPARLDILDTAGQEEFGAMREQYMRAGHGFL 82 (173)
T ss_dssp SSCEEEEEEEECTTSSHHHHHHHHHHSSCCSSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTTTSCCHHHHHHHCSEEE
T ss_pred CCCeEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccceeeEeccCCeeeeeeccccccccccccccchhhccceeee
Confidence 4567999999999999999999999998888777765422 2334434 478889999999999999999999999999
Q ss_pred EEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccC--HHHHHHHhCcccccCCceeEEEeeecCCCChH
Q 030429 86 YVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALS--KQALVDQLGLESITDREVCCYMISCKDSINID 163 (177)
Q Consensus 86 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 163 (177)
+|||++++.++..+..|+..+.......+.|+++|+||+|+.+... .++..+... ..++++++|||++|.||+
T Consensus 83 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilvgnK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~e~Sak~g~gv~ 157 (173)
T d2fn4a1 83 LVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQRQVPRSEASAFGA-----SHHVAYFEASAKLRLNVD 157 (173)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHHTSSCCCEEEEEECGGGGGGCCSCHHHHHHHHH-----HTTCEEEECBTTTTBSHH
T ss_pred eecccccccccchhhhhhHHHHHHhccCCCceEEEEEeechhhccccchhhhhHHHH-----hcCCEEEEEeCCCCcCHH
Confidence 9999999999999999998887655556789999999999875422 222222211 123479999999999999
Q ss_pred HHHHHHHHHhhhcC
Q 030429 164 AVIDWLIKHSKTAK 177 (177)
Q Consensus 164 ~l~~~l~~~~~~~~ 177 (177)
++|+.|++.+.+++
T Consensus 158 e~f~~l~~~i~k~~ 171 (173)
T d2fn4a1 158 EAFEQLVRAVRKYQ 171 (173)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999987653
|
| >d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ran species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1.9e-35 Score=197.12 Aligned_cols=158 Identities=22% Similarity=0.417 Sum_probs=127.9
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEE----eCCEEEEEEecCCchhhHHhHHHHhcCCCEEEEE
Q 030429 12 EMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVT----KGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYV 87 (177)
Q Consensus 12 ~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~----~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v 87 (177)
.+||+++|++|||||||+++++++.+...+.+|.+....... ...+.+.+||++|+..+...+..+++++|++++|
T Consensus 3 ~~Ki~vvG~~~vGKTsli~~~~~~~f~~~~~~Ti~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv 82 (170)
T d1i2ma_ 3 QFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIM 82 (170)
T ss_dssp EEEEEEEECTTSSHHHHHHTTC-----CCEEEETTEEEEEEEECBTTCCEEEEEEECTTHHHHSSCGGGGTTTCCEEEEE
T ss_pred eEEEEEECCCCcCHHHHHHHHHhCCCCcccccceeccccccccccccccccccccccccccccceecchhcccccchhhc
Confidence 479999999999999999999999988888888886665533 2458999999999999999999999999999999
Q ss_pred EeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccCHHHHHHHhCcccccCCceeEEEeeecCCCChHHHHH
Q 030429 88 VDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCKDSINIDAVID 167 (177)
Q Consensus 88 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~ 167 (177)
||++++++++++..|+....... .++|+++|+||+|+.+....++..+.. ...++++++|||++|.|++++|+
T Consensus 83 ~d~~~~~Sf~~~~~~~~~~~~~~--~~~piilvgnK~Dl~~~~~~~~~~~~~-----~~~~~~~~e~Sak~~~~v~e~f~ 155 (170)
T d1i2ma_ 83 FDVTSRVTYKNVPNWHRDLVRVC--ENIPIVLCGNKVDIKDRKVKAKSIVFH-----RKKNLQYYDISAKSNYNFEKPFL 155 (170)
T ss_dssp EETTSGGGGTTHHHHHHHHHHHH--CSCCEEEEEECCCCSCSCCTTTSHHHH-----SSCSSEEEEEBTTTTBTTTHHHH
T ss_pred cccccccccchhHHHHHHHhhcc--CCCceeeecchhhhhhhhhhhHHHHHH-----HHcCCEEEEEeCCCCCCHHHHHH
Confidence 99999999999999998876543 479999999999997654433322222 22456899999999999999999
Q ss_pred HHHHHhhhc
Q 030429 168 WLIKHSKTA 176 (177)
Q Consensus 168 ~l~~~~~~~ 176 (177)
+|.+.+.+.
T Consensus 156 ~l~~~l~~~ 164 (170)
T d1i2ma_ 156 WLARKLIGD 164 (170)
T ss_dssp HHHHHHHTC
T ss_pred HHHHHHccC
Confidence 999987654
|
| >d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap1A species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=4.3e-35 Score=194.90 Aligned_cols=161 Identities=19% Similarity=0.281 Sum_probs=132.1
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEE---EeCCEEEEEEecCCchhhHHhHHHHhcCCCEEEEE
Q 030429 11 QEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKV---TKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYV 87 (177)
Q Consensus 11 ~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~---~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v 87 (177)
+.+||+++|++|||||||++++..+.+...+.++.+...... ....+.+.+||++|+..+...+..+++.+|++++|
T Consensus 2 r~~KivvvG~~~vGKTsli~r~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~ilv 81 (167)
T d1c1ya_ 2 REYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALV 81 (167)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHCCCCCSCCCCSEEEEEEEEESSSCEEEEEEEEECSSCSSTTHHHHHHHHCSEEEEE
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCCCccCCccccccceeEEeeeeEEEeccccccCcccccccccccccccceeEEe
Confidence 467999999999999999999999999888888877554432 24558899999999999999999999999999999
Q ss_pred EeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccC--HHHHHHHhCcccccCCceeEEEeeecCCCChHHH
Q 030429 88 VDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALS--KQALVDQLGLESITDREVCCYMISCKDSINIDAV 165 (177)
Q Consensus 88 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l 165 (177)
+|++++.+++++..|+..+......++.|+++|+||+|+..... .++..+... ....+++++|||++|.||+++
T Consensus 82 ~d~~~~~sf~~~~~~~~~~~~~~~~~~~p~ilvgnK~Dl~~~~~~~~~~~~~~~~----~~~~~~~~e~Sak~g~gv~e~ 157 (167)
T d1c1ya_ 82 YSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLAR----QWCNCAFLESSAKSKINVNEI 157 (167)
T ss_dssp EETTCHHHHHTHHHHHHHHHHHHCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHH----HTTSCEEEECBTTTTBSHHHH
T ss_pred eeccchhhhHhHHHHHHHHHHhcCCCCCeEEEEEEecCcccccccchhHHHHHHH----HhCCCEEEEEcCCCCcCHHHH
Confidence 99999999999999999887655556799999999999876432 222222111 113457999999999999999
Q ss_pred HHHHHHHhhh
Q 030429 166 IDWLIKHSKT 175 (177)
Q Consensus 166 ~~~l~~~~~~ 175 (177)
|++|++.+.+
T Consensus 158 F~~l~~~i~k 167 (167)
T d1c1ya_ 158 FYDLVRQINR 167 (167)
T ss_dssp HHHHHHHHTC
T ss_pred HHHHHHHhcC
Confidence 9999998753
|
| >d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein RalA species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]
Probab=100.00 E-value=1.4e-34 Score=192.56 Aligned_cols=160 Identities=22% Similarity=0.304 Sum_probs=127.9
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEE-EEe--CCEEEEEEecCCchhhHHhHHHHhcCCCEEEEEE
Q 030429 12 EMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRK-VTK--GNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVV 88 (177)
Q Consensus 12 ~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~-~~~--~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~ 88 (177)
-+||+++|++|||||||+++++++.+...+.+|.+..... +.. ..+.+.+||++|+.++......+++.+|++++|+
T Consensus 4 ~~KivlvG~~~vGKTsli~~~~~~~f~~~~~~T~~~~~~~~~~~~~~~~~l~i~d~~g~~~~~~~~~~~~~~~~~~ilv~ 83 (168)
T d1u8za_ 4 LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVF 83 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC---CHHHHHHHHHHCSEEEEEE
T ss_pred eeEEEEECCCCcCHHHHHHHHHhCCCCcccCCccccccccccccccccccccccccccccchhhhhhhcccccceeEEEe
Confidence 3699999999999999999999999988888888755432 333 3578899999999999998999999999999999
Q ss_pred eCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccC--HHHHHHHhCcccccCCceeEEEeeecCCCChHHHH
Q 030429 89 DAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALS--KQALVDQLGLESITDREVCCYMISCKDSINIDAVI 166 (177)
Q Consensus 89 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~ 166 (177)
|++++.+++.+..|+..+.......+.|+++|+||+|+.+... .++..+.... .++++++|||++|.||+++|
T Consensus 84 d~~~~~s~~~~~~~~~~i~~~~~~~~~piiivgnK~Dl~~~~~v~~~~~~~~~~~-----~~~~~~e~Sak~g~gv~e~f 158 (168)
T d1u8za_ 84 SITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRADQ-----WNVNYVETSAKTRANVDKVF 158 (168)
T ss_dssp ETTCHHHHHHHHHHHHHHHHHHCCTTSCEEEEEECGGGGGGCCSCHHHHHHHHHH-----HTCEEEECCTTTCTTHHHHH
T ss_pred eccchhhhhhHHHHHHHHHHhhCCCCCcEEEEeccccccccccccHHHHHHHHHH-----cCCeEEEEcCCCCcCHHHHH
Confidence 9999999999999998887665556899999999999865422 2332222111 12479999999999999999
Q ss_pred HHHHHHhhhc
Q 030429 167 DWLIKHSKTA 176 (177)
Q Consensus 167 ~~l~~~~~~~ 176 (177)
++|++.+..+
T Consensus 159 ~~l~~~i~~r 168 (168)
T d1u8za_ 159 FDLMREIRAR 168 (168)
T ss_dssp HHHHHHHHTC
T ss_pred HHHHHHHHCc
Confidence 9999988653
|
| >d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoA species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=8.6e-35 Score=195.16 Aligned_cols=162 Identities=19% Similarity=0.235 Sum_probs=127.6
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEE---EEeCCEEEEEEecCCchhhHHhHHHHhcCCCEEEEEE
Q 030429 12 EMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRK---VTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVV 88 (177)
Q Consensus 12 ~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~---~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~ 88 (177)
..||+++|++|||||||++++.++.+...+.+|.+..... .....+.+.+||++|++.+...+..+++++|++++||
T Consensus 2 r~KivvvG~~~vGKTsLi~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv~ 81 (177)
T d1kmqa_ 2 RKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCF 81 (177)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEE
T ss_pred cEEEEEECCCCcCHHHHHHHHHhCCCCCCcCCceeeeccccccccccceeeeccccCccchhcccchhhcccchhhhhhc
Confidence 4689999999999999999999999988888887644322 2234578999999999999999999999999999999
Q ss_pred eCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccCHHHHHHHhCccc----------ccCCceeEEEeeecC
Q 030429 89 DAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLES----------ITDREVCCYMISCKD 158 (177)
Q Consensus 89 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~Sa~~ 158 (177)
|++++++|++...|+........ ++.|+++|+||+|+.+.....+......... ......+|++|||++
T Consensus 82 d~~~~~Sf~~~~~~~~~~~~~~~-~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~v~~~e~~~~a~~~~~~~~~E~SAkt 160 (177)
T d1kmqa_ 82 SIDSPDSLENIPEKWTPEVKHFC-PNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKT 160 (177)
T ss_dssp ETTCHHHHHHHHHTHHHHHHHHS-TTSCEEEEEECGGGTTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCTTT
T ss_pred ccchhHHHHHHHHHHHHHHHHhC-CCCceEEeeecccccchhhHHHHHHHhhcccccHHHHHHHHHHcCCcEEEEecCCC
Confidence 99999999999888877766433 5789999999999976432222111111110 011234799999999
Q ss_pred CCChHHHHHHHHHHhh
Q 030429 159 SINIDAVIDWLIKHSK 174 (177)
Q Consensus 159 ~~~i~~l~~~l~~~~~ 174 (177)
|.||+++|+.+.+.+.
T Consensus 161 ~~gi~e~F~~i~~~~l 176 (177)
T d1kmqa_ 161 KDGVREVFEMATRAAL 176 (177)
T ss_dssp CTTHHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHh
Confidence 9999999999998875
|
| >d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: di-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1.4e-34 Score=193.07 Aligned_cols=158 Identities=23% Similarity=0.332 Sum_probs=128.2
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEE-EEe--CCEEEEEEecCCchhhHHhHHHHhcCCCEEEEE
Q 030429 11 QEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRK-VTK--GNVTIKLWDLGGQRRFRTMWERYCRGVSAILYV 87 (177)
Q Consensus 11 ~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~-~~~--~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v 87 (177)
+.+||+++|.+|||||||+++++++.+...+.+|.+..... ... ..+.+.+||++|+..+......++..+|++++|
T Consensus 1 n~~Ki~viG~~~vGKTsLi~r~~~~~f~~~~~~T~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~a~~~ilv 80 (171)
T d2erxa1 1 NDYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQVISCDKSICTLQITDTTGSHQFPAMQRLSISKGHAFILV 80 (171)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEEEEEEEEETTEEEEEEEEECCSCSSCHHHHHHHHHHCSEEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhCCCCCccCcceeeccccceeeccccceeccccccccccccccccccccceeEEEEE
Confidence 46899999999999999999999999888888888755443 223 347788999999999999999999999999999
Q ss_pred EeCCCCCCHHHHHHHHHHHHcC-CCCCCCcEEEEeeCCCcccccC--HH---HHHHHhCcccccCCceeEEEeeecCCCC
Q 030429 88 VDAADRDSVPIARSELHELLMK-PSLSGIPLLVLGNKIDKSEALS--KQ---ALVDQLGLESITDREVCCYMISCKDSIN 161 (177)
Q Consensus 88 ~d~~~~~~~~~~~~~~~~~~~~-~~~~~~~~iiv~nK~D~~~~~~--~~---~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 161 (177)
||+++++++..+..|+..+... ......|+++|+||+|+.+... .+ ++.+.+ ++++++|||++|.|
T Consensus 81 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~v~~~e~~~~~~~~--------~~~~~e~Sak~~~~ 152 (171)
T d2erxa1 81 YSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPSREVQSSEAEALARTW--------KCAFMETSAKLNHN 152 (171)
T ss_dssp EETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGGGCCSCHHHHHHHHHHH--------TCEEEECBTTTTBS
T ss_pred eecccccchhcccchhhhhhhhhccCCCCcEEEEeecccccccccccHHHHHHHHHHc--------CCeEEEEcCCCCcC
Confidence 9999999999999998877553 2235789999999999865422 22 222222 24799999999999
Q ss_pred hHHHHHHHHHHhhhc
Q 030429 162 IDAVIDWLIKHSKTA 176 (177)
Q Consensus 162 i~~l~~~l~~~~~~~ 176 (177)
|+++|+.|++.++++
T Consensus 153 v~e~f~~l~~~~~~~ 167 (171)
T d2erxa1 153 VKELFQELLNLEKRR 167 (171)
T ss_dssp HHHHHHHHHHTCCSS
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999999988765
|
| >d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein RheB species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=5.5e-35 Score=194.41 Aligned_cols=158 Identities=18% Similarity=0.294 Sum_probs=131.1
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEE-EEEeC--CEEEEEEecCCchhhHHhHHHHhcCCCEEEE
Q 030429 10 KQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMR-KVTKG--NVTIKLWDLGGQRRFRTMWERYCRGVSAILY 86 (177)
Q Consensus 10 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~ 86 (177)
.+.+||+++|++|||||||+++|.++.+...+.+|.+.... .+..+ .+.+.+||++|...+..+...++..+|++++
T Consensus 2 ~k~~Kv~liG~~~vGKTsLl~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~d~~g~~~~~~~~~~~~~~~d~~il 81 (167)
T d1xtqa1 2 SKSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDINGYIL 81 (167)
T ss_dssp CEEEEEEEEESTTSSHHHHHHHHHHSCCCSCCCSSCCEEEEEEEEETTEEEEEEEEECCCCCTTCCCCGGGTSSCCEEEE
T ss_pred CcceEEEEECCCCcCHHHHHHHHHhCCCCcccCcceecccceEEecCcEEEEeeecccccccccccccchhhhhhhhhhh
Confidence 45689999999999999999999999988888888876543 23333 4778899999999998888889999999999
Q ss_pred EEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccC--HHH---HHHHhCcccccCCceeEEEeeecCCCC
Q 030429 87 VVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALS--KQA---LVDQLGLESITDREVCCYMISCKDSIN 161 (177)
Q Consensus 87 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~--~~~---~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 161 (177)
|||+++++++..+..|+..+.......+.|+++|+||+|+..... .++ +.+.+ ++++++|||++|.|
T Consensus 82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~r~v~~~~~~~~a~~~--------~~~~~e~Sak~~~~ 153 (167)
T d1xtqa1 82 VYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHMERVISYEEGKALAESW--------NAAFLESSAKENQT 153 (167)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHHCSSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHH--------TCEEEECCTTCHHH
T ss_pred hcccchhhhhhhhhhhhhhhhhcccccccceeeeccccccccccchhHHHHHHHHHHc--------CCEEEEEecCCCCC
Confidence 999999999999999998887765556799999999999865422 222 33333 23799999999999
Q ss_pred hHHHHHHHHHHhhh
Q 030429 162 IDAVIDWLIKHSKT 175 (177)
Q Consensus 162 i~~l~~~l~~~~~~ 175 (177)
|+++|+.|++.+.+
T Consensus 154 v~~~f~~li~~~~K 167 (167)
T d1xtqa1 154 AVDVFRRIILEAEK 167 (167)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcC
Confidence 99999999988764
|
| >d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=2.1e-34 Score=192.25 Aligned_cols=162 Identities=20% Similarity=0.294 Sum_probs=127.3
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeE-EEEEeC--CEEEEEEecCCchhhHHhHHHHhcCCCEEEEE
Q 030429 11 QEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNM-RKVTKG--NVTIKLWDLGGQRRFRTMWERYCRGVSAILYV 87 (177)
Q Consensus 11 ~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v 87 (177)
+.+||+++|++|||||||++++.++.+...+.+|.+... ..+..+ .+.+.+||++|+..+......++..+|++++|
T Consensus 4 ~~~Ki~lvG~~~vGKTsLi~r~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~ilv 83 (171)
T d2erya1 4 EKYRLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDSYTKQCVIDDRAARLDILDTAGQEEFGAMREQYMRTGEGFLLV 83 (171)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHHSCCCSSCCTTCCEEEEEEEEETTEEEEEEEEECC----CCHHHHHHHHHCSEEEEE
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCCCCcccCcccccceeeeeeecccccccccccccccccccccccccccccceEEEe
Confidence 458999999999999999999999988888777766333 223333 47899999999999999889999999999999
Q ss_pred EeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccc--CHHHHHHHhCcccccCCceeEEEeeecCCCChHHH
Q 030429 88 VDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEAL--SKQALVDQLGLESITDREVCCYMISCKDSINIDAV 165 (177)
Q Consensus 88 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l 165 (177)
+|.++++++..+..|+..+.........|+++|+||+|+.+.. ..++..+... ..++++++|||++|.||+++
T Consensus 84 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilvgnK~Dl~~~~~v~~~~~~~~~~-----~~~~~~~e~Sak~~~~i~e~ 158 (171)
T d2erya1 84 FSVTDRGSFEEIYKFQRQILRVKDRDEFPMILIGNKADLDHQRQVTQEEGQQLAR-----QLKVTYMEASAKIRMNVDQA 158 (171)
T ss_dssp EETTCHHHHHTHHHHHHHHHHHHTSSCCSEEEEEECTTCTTSCSSCHHHHHHHHH-----HTTCEEEECBTTTTBSHHHH
T ss_pred eccccccchhhHHHHhHHHHhhcccCCCCEEEEEeccchhhhccchHHHHHHHHH-----HcCCEEEEEcCCCCcCHHHH
Confidence 9999999999999999887766555679999999999986542 2222222221 12347999999999999999
Q ss_pred HHHHHHHhhhcC
Q 030429 166 IDWLIKHSKTAK 177 (177)
Q Consensus 166 ~~~l~~~~~~~~ 177 (177)
|+.|++.+.+.+
T Consensus 159 f~~l~~~i~k~~ 170 (171)
T d2erya1 159 FHELVRVIRKFQ 170 (171)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHhh
Confidence 999999987653
|
| >d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab3a species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=100.00 E-value=7.2e-34 Score=189.31 Aligned_cols=160 Identities=21% Similarity=0.382 Sum_probs=128.4
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEE--EEe--CCEEEEEEecCCchhhHHhHHHHhcCCCEEEE
Q 030429 11 QEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRK--VTK--GNVTIKLWDLGGQRRFRTMWERYCRGVSAILY 86 (177)
Q Consensus 11 ~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~--~~~--~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~ 86 (177)
..+||+++|++|||||||++++.++.+.....++.+..... +.. ..+.+++|||||++++...+..+++++|++++
T Consensus 4 ~~~Ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~wDt~G~e~~~~~~~~~~~~ad~~il 83 (169)
T d3raba_ 4 YMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGQERYRTITTAYYRGAMGFIL 83 (169)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTTTTCCEEEE
T ss_pred eEEEEEEECCCCcCHHHHHHHHHcCCCCcccccccccceeeEEEEeecceEEEEEEECCCchhhHHHHHHHHhcCCEEEE
Confidence 46899999999999999999999998888888777755443 333 34789999999999999999999999999999
Q ss_pred EEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccC--HHHHHHHhCcccccCCceeEEEeeecCCCChHH
Q 030429 87 VVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALS--KQALVDQLGLESITDREVCCYMISCKDSINIDA 164 (177)
Q Consensus 87 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 164 (177)
|+|++++.++.....|+...... .....|+++|+||+|+.+... .++..+... ..++++++|||++|.||++
T Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~-~~~~~~iivv~nK~D~~~~~~v~~~~~~~~~~-----~~~~~~~e~Sak~g~gv~e 157 (169)
T d3raba_ 84 MYDITNEESFNAVQDWSTQIKTY-SWDNAQVLLVGNKCDMEDERVVSSERGRQLAD-----HLGFEFFEASAKDNINVKQ 157 (169)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHH-CCSCCEEEEEEECTTCGGGCCSCHHHHHHHHH-----HHTCEEEECBTTTTBSHHH
T ss_pred EEECccchhhhhhhhhhhhhhcc-cCCcceEEEEEeecccccccccchhhhHHHHH-----HcCCEEEEecCCCCcCHHH
Confidence 99999999999998888766443 335789999999999876432 222222111 1124799999999999999
Q ss_pred HHHHHHHHhhhc
Q 030429 165 VIDWLIKHSKTA 176 (177)
Q Consensus 165 l~~~l~~~~~~~ 176 (177)
+|++|++.+.++
T Consensus 158 ~f~~l~~~i~ek 169 (169)
T d3raba_ 158 TFERLVDVICEK 169 (169)
T ss_dssp HHHHHHHHHHTC
T ss_pred HHHHHHHHHhhC
Confidence 999999988764
|
| >d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: cH-p21 Ras protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=3e-34 Score=190.61 Aligned_cols=161 Identities=17% Similarity=0.281 Sum_probs=131.1
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEE---EeCCEEEEEEecCCchhhHHhHHHHhcCCCEEEEE
Q 030429 11 QEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKV---TKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYV 87 (177)
Q Consensus 11 ~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~---~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v 87 (177)
+.+||+++|++|||||||+++|+++.+...+.++.+...... ....+.+.+||++|++.+......++..++++++|
T Consensus 2 ~e~Ki~viG~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~iiv 81 (166)
T d1ctqa_ 2 TEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCV 81 (166)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHCCCCCSCCCCSEEEEEEEEEETTEEEEEEEEEECCCGGGHHHHHHHHHHCSEEEEE
T ss_pred CeeEEEEECCCCCCHHHHHHHHHhCCCCCccCCccceeeccceeeeceeeeeeeeeccCccccccchhhhhhccccccee
Confidence 358999999999999999999999998888888777554432 23357899999999999999999999999999999
Q ss_pred EeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccCHHHHHHHhCcccccCCceeEEEeeecCCCChHHHHH
Q 030429 88 VDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCKDSINIDAVID 167 (177)
Q Consensus 88 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~ 167 (177)
+|++++.+++....|+..+.......+.|+++|+||+|+.+.....+..+.+.. ..++++++|||++|.||+++|+
T Consensus 82 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~----~~~~~~~e~Sak~g~gi~e~f~ 157 (166)
T d1ctqa_ 82 FAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAARTVESRQAQDLAR----SYGIPYIETSAKTRQGVEDAFY 157 (166)
T ss_dssp EETTCHHHHHTHHHHHHHHHHHHTCSSCCEEEEEECTTCSCCCSCHHHHHHHHH----HHTCCEEECCTTTCTTHHHHHH
T ss_pred ecccccccHHHHHHHHHHHHHhcCCCCCeEEEEecccccccccccHHHHHHHHH----HhCCeEEEEcCCCCcCHHHHHH
Confidence 999999999999999998877655567999999999998654322222222211 1224799999999999999999
Q ss_pred HHHHHhhh
Q 030429 168 WLIKHSKT 175 (177)
Q Consensus 168 ~l~~~~~~ 175 (177)
.|++.+.+
T Consensus 158 ~i~~~i~~ 165 (166)
T d1ctqa_ 158 TLVREIRQ 165 (166)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHh
Confidence 99998875
|
| >d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap2a species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=3.5e-34 Score=190.45 Aligned_cols=159 Identities=17% Similarity=0.294 Sum_probs=129.0
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEE-EEe--CCEEEEEEecCCchhhHHhHHHHhcCCCEEEEE
Q 030429 11 QEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRK-VTK--GNVTIKLWDLGGQRRFRTMWERYCRGVSAILYV 87 (177)
Q Consensus 11 ~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~-~~~--~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v 87 (177)
+.+||+++|++|||||||+++++++.+...+.++.+..... ... ..+.+.+||++|+..+......+++++|++++|
T Consensus 2 k~~Ki~lvG~~~vGKTsLi~r~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~a~~~ilv 81 (167)
T d1kaoa_ 2 REYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFILV 81 (167)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEEE
T ss_pred ceeEEEEECCCCcCHHHHHHHHHhCCCCCccCCceeeeeeeeeecCcceEeeccccCCCccccccchHHHhhcccceeee
Confidence 56899999999999999999999999888888877643222 223 347889999999999999999999999999999
Q ss_pred EeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccC--HHHHHHHhCcccccCCceeEEEeeecCCCChHHH
Q 030429 88 VDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALS--KQALVDQLGLESITDREVCCYMISCKDSINIDAV 165 (177)
Q Consensus 88 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l 165 (177)
+|++++.++.++..|+..+.......+.|+++|+||+|+.+... .++...... ..++++++|||++|.||+++
T Consensus 82 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~e~Sak~g~~i~e~ 156 (167)
T d1kaoa_ 82 YSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESEREVSSSEGRALAE-----EWGCPFMETSAKSKTMVDEL 156 (167)
T ss_dssp EETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHH-----HHTSCEEEECTTCHHHHHHH
T ss_pred eeecchhhhhhhhchhhhhhhhccCCCCCEEEEEEccchhhcccchHHHHHHHHH-----HcCCeEEEECCCCCcCHHHH
Confidence 99999999999999999887655556899999999999865422 222211111 11237999999999999999
Q ss_pred HHHHHHHhh
Q 030429 166 IDWLIKHSK 174 (177)
Q Consensus 166 ~~~l~~~~~ 174 (177)
|+.|++.+.
T Consensus 157 f~~i~~~i~ 165 (167)
T d1kaoa_ 157 FAEIVRQMN 165 (167)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHc
Confidence 999998775
|
| >d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein M-Ras (XRas) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=5.8e-34 Score=189.75 Aligned_cols=160 Identities=20% Similarity=0.248 Sum_probs=130.2
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEE-EE--eCCEEEEEEecCCchhhHHhHHHHhcCCCEEEEEE
Q 030429 12 EMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRK-VT--KGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVV 88 (177)
Q Consensus 12 ~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~-~~--~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~ 88 (177)
.+||+++|++|||||||++++.++.+...+.++.+..... +. ...+.+.+||++|++.+......+++++|++++||
T Consensus 4 t~Ki~lvG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~llv~ 83 (169)
T d1x1ra1 4 TYKLVVVGDGGVGKSALTIQFFQKIFVPDYDPTIEDSYLKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTGDGFLIVY 83 (169)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSSCCTTCCTTCCEEEEEEEEETTEEEEEEEEECCSCGGGCSSHHHHHHHCSEEEEEE
T ss_pred cEEEEEECCCCcCHHHHHHHHHhCCCCcccCcceeeccccccccccccccccccccccccccccchhhhhhhccEEEEec
Confidence 5899999999999999999999998888887777643322 23 34578999999999999999999999999999999
Q ss_pred eCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccC--HHHHHHHhCcccccCCceeEEEeeecCCC-ChHHH
Q 030429 89 DAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALS--KQALVDQLGLESITDREVCCYMISCKDSI-NIDAV 165 (177)
Q Consensus 89 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~-~i~~l 165 (177)
|+++++++..+..|+..+.........|+++|+||+|+.+... .++..+.... .++++++|||+++. ||+++
T Consensus 84 d~~d~~Sf~~~~~~~~~i~~~~~~~~~p~ilvgnK~Dl~~~~~v~~e~~~~~~~~-----~~~~~~e~Sak~~~~nV~~~ 158 (169)
T d1x1ra1 84 SVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEMATK-----YNIPYIETSAKDPPLNVDKT 158 (169)
T ss_dssp ETTCHHHHHTHHHHHHHHHHHHTSSCCCEEEEEECTTCSTTCCSCHHHHHHHHHH-----HTCCEEEEBCSSSCBSHHHH
T ss_pred ccccchhhhccchhhHHHHhhccccCccEEEEecccchhhhceeehhhHHHHHHH-----cCCEEEEEcCCCCCcCHHHH
Confidence 9999999999999999887665556799999999999876432 2332222111 12369999999886 99999
Q ss_pred HHHHHHHhhhc
Q 030429 166 IDWLIKHSKTA 176 (177)
Q Consensus 166 ~~~l~~~~~~~ 176 (177)
|+.|.+.+.++
T Consensus 159 F~~l~~~i~~~ 169 (169)
T d1x1ra1 159 FHDLVRVIRQQ 169 (169)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHHHHHhC
Confidence 99999998764
|
| >d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoQ species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=3.6e-34 Score=193.39 Aligned_cols=165 Identities=19% Similarity=0.221 Sum_probs=127.7
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEE-EE--eCCEEEEEEecCCchhhHHhHHHHhcCCCEEE
Q 030429 9 FKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRK-VT--KGNVTIKLWDLGGQRRFRTMWERYCRGVSAIL 85 (177)
Q Consensus 9 ~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~-~~--~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i 85 (177)
....+||+++|.+|||||||+++|+++.+...+.+|.+..... +. ...+.+.+||++|++.+...+..+++++|+++
T Consensus 6 ~~~~~Ki~lvG~~~vGKTsLi~r~~~~~f~~~~~~Ti~~~~~~~~~~~~~~~~l~i~D~~g~e~~~~~~~~~~~~a~~~i 85 (185)
T d2atxa1 6 GALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFL 85 (185)
T ss_dssp EEEEEEEEEEECTTSSHHHHHHHHHHSSCCCSCCCSSCCCEEEEEESSSCEEEEEEECCCCSSSSTTTGGGGCTTCSEEE
T ss_pred CCcEEEEEEECCCCCCHHHHHHHHhhCCCCCcCCCceeeeeeEEEeeCCceEEeecccccccchhhhhhhhcccccceee
Confidence 4567999999999999999999999999888888877633332 23 24578999999999999999999999999999
Q ss_pred EEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccCHHHHHHHhCccc----------ccCCceeEEEee
Q 030429 86 YVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLES----------ITDREVCCYMIS 155 (177)
Q Consensus 86 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~S 155 (177)
+|||++++++|++...|+....... ..+.|+++|+||+|+.+............... .......|++||
T Consensus 86 lv~d~t~~~Sf~~~~~~~~~~~~~~-~~~~~~ilvgnK~Dl~~~~~~~~~~~~~~~r~v~~~~~~~~a~~~~~~~~~E~S 164 (185)
T d2atxa1 86 ICFSVVNPASFQNVKEEWVPELKEY-APNVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVECS 164 (185)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHH-STTCCEEEEEECTTSTTCHHHHHHHTTTTCCCCCHHHHHHHHHHHTCSCEEECC
T ss_pred eccccchHHHHHHHHHHHHHHHHhc-CCCCCeeEeeeccccccchhhhhhhhhcccccccHHHHHHHHHHcCCCEEEEec
Confidence 9999999999999887777776643 35789999999999876422211111110000 001234799999
Q ss_pred ecCCCChHHHHHHHHHHhh
Q 030429 156 CKDSINIDAVIDWLIKHSK 174 (177)
Q Consensus 156 a~~~~~i~~l~~~l~~~~~ 174 (177)
|++|.||+++|+.+++.+.
T Consensus 165 Ak~~~gv~e~F~~li~~il 183 (185)
T d2atxa1 165 ALTQKGLKTVFDEAIIAIL 183 (185)
T ss_dssp TTTCTTHHHHHHHHHHHHH
T ss_pred CCCCcCHHHHHHHHHHHHc
Confidence 9999999999999998764
|
| >d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab23 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=5.4e-34 Score=189.03 Aligned_cols=156 Identities=23% Similarity=0.416 Sum_probs=127.1
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEE--EeC--CEEEEEEecCCchhhHHhHHHHhcCCCEEEEE
Q 030429 12 EMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKV--TKG--NVTIKLWDLGGQRRFRTMWERYCRGVSAILYV 87 (177)
Q Consensus 12 ~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~--~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v 87 (177)
.+||+++|++|||||||+++|.++.+...+.+|.+...... ... .+.+.+||++|+.++......+++.+|++++|
T Consensus 2 ~iKv~liG~~~vGKSsLi~rl~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v 81 (164)
T d1z2aa1 2 AIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQACVLV 81 (164)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTCCCHHHHTTCCEEEEE
T ss_pred eEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccccceeeeeecCceeeeeeeccCCccchhhhhhhhhccCceEEEE
Confidence 47999999999999999999999998888888887555543 333 47889999999999998889999999999999
Q ss_pred EeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccC--HHHHHHHhCcccccCCceeEEEeeecCCCChHHH
Q 030429 88 VDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALS--KQALVDQLGLESITDREVCCYMISCKDSINIDAV 165 (177)
Q Consensus 88 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l 165 (177)
+|++++++++.+..|+..+.... .+.|+++|+||+|+.+... .++..+... ..++++++|||++|.||+++
T Consensus 82 ~d~~~~~s~~~~~~~~~~i~~~~--~~~~iilVgnK~Dl~~~~~v~~~~~~~~~~-----~~~~~~~e~Sak~g~~v~e~ 154 (164)
T d1z2aa1 82 FSTTDRESFEAISSWREKVVAEV--GDIPTALVQNKIDLLDDSCIKNEEAEGLAK-----RLKLRFYRTSVKEDLNVSEV 154 (164)
T ss_dssp EETTCHHHHHTHHHHHHHHHHHH--CSCCEEEEEECGGGGGGCSSCHHHHHHHHH-----HHTCEEEECBTTTTBSSHHH
T ss_pred EeccchhhhhhcccccccccccC--CCceEEEeeccCCcccceeeeehhhHHHHH-----HcCCEEEEeccCCCcCHHHH
Confidence 99999999999999988876543 3689999999999876432 222222111 11347999999999999999
Q ss_pred HHHHHHHhh
Q 030429 166 IDWLIKHSK 174 (177)
Q Consensus 166 ~~~l~~~~~ 174 (177)
|+.|++.+.
T Consensus 155 f~~l~~~~l 163 (164)
T d1z2aa1 155 FKYLAEKHL 163 (164)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 999998764
|
| >d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab30 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1.3e-33 Score=188.33 Aligned_cols=159 Identities=25% Similarity=0.342 Sum_probs=126.9
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEE--EEeC--CEEEEEEecCCchhhHHhHHHHhcCCCEEE
Q 030429 10 KQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRK--VTKG--NVTIKLWDLGGQRRFRTMWERYCRGVSAIL 85 (177)
Q Consensus 10 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~--~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i 85 (177)
...+||+++|++|||||||+++++++.+.....++.+..... +..+ .+.+.+|||||++.+...+..+++++++++
T Consensus 3 ~~~~Ki~lvG~~~vGKTsLi~~l~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~~~~~i 82 (171)
T d2ew1a1 3 DFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSANALI 82 (171)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHGGGSTTCSEEE
T ss_pred CEEEEEEEECCCCcCHHHHHHHHHhCCCCCcccccccceEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhccceEE
Confidence 346899999999999999999999998888877766654443 4433 478899999999999999999999999999
Q ss_pred EEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccC--HHHHHHHhCcccccCCceeEEEeeecCCCChH
Q 030429 86 YVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALS--KQALVDQLGLESITDREVCCYMISCKDSINID 163 (177)
Q Consensus 86 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 163 (177)
+|+|++++.++.....|+..+... .....|+++|+||+|+.+... .++..+... ..++++++|||++|.||+
T Consensus 83 ~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~~~ilvgnK~D~~~~~~v~~~~~~~~~~-----~~~~~~~~~SAktg~gV~ 156 (171)
T d2ew1a1 83 LTYDITCEESFRCLPEWLREIEQY-ASNKVITVLVGNKIDLAERREVSQQRAEEFSE-----AQDMYYLETSAKESDNVE 156 (171)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHH-SCTTCEEEEEEECGGGGGGCSSCHHHHHHHHH-----HHTCCEEECCTTTCTTHH
T ss_pred Eeeecccchhhhhhhhhhhhhccc-ccccccEEEEEeecccccccchhhhHHHHHHH-----hCCCEEEEEccCCCCCHH
Confidence 999999999999999999887654 225689999999999875432 222222211 122369999999999999
Q ss_pred HHHHHHHHHhh
Q 030429 164 AVIDWLIKHSK 174 (177)
Q Consensus 164 ~l~~~l~~~~~ 174 (177)
++|..|++.+.
T Consensus 157 e~f~~l~~~l~ 167 (171)
T d2ew1a1 157 KLFLDLACRLI 167 (171)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999887654
|
| >d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-22a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=4.9e-34 Score=189.78 Aligned_cols=158 Identities=22% Similarity=0.353 Sum_probs=129.0
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEE--eC--CEEEEEEecCCchhhHHhHHHHhcCCCEEEE
Q 030429 11 QEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVT--KG--NVTIKLWDLGGQRRFRTMWERYCRGVSAILY 86 (177)
Q Consensus 11 ~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~--~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~ 86 (177)
+.+||+++|.+|||||||+++|.++.+...+.+|.+....... .+ ...+.+||++|+..+...+..++.+++++++
T Consensus 3 k~~Ki~lvG~~~vGKTsli~rl~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~ 82 (167)
T d1z0ja1 3 RELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRALAPMYYRGSAAAII 82 (167)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGTHHHHTTCSEEEE
T ss_pred ceeEEEEECCCCcCHHHHHHHHHhCCCCcccccccccccccccccccccccceeeeecCCchhhhHHHHHHHhhccceEE
Confidence 5789999999999999999999999998888888776665432 33 3567899999999999999999999999999
Q ss_pred EEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccC--HHHHHHHhCcccccCCceeEEEeeecCCCChHH
Q 030429 87 VVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALS--KQALVDQLGLESITDREVCCYMISCKDSINIDA 164 (177)
Q Consensus 87 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 164 (177)
|+|+++++++..+..|+....... ....|+++|+||+|+.+... .++..+... ..++++++|||++|.||++
T Consensus 83 v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~iilvgnK~Dl~~~~~v~~~~~~~~~~-----~~~~~~~e~SAk~~~nV~e 156 (167)
T d1z0ja1 83 VYDITKEETFSTLKNWVRELRQHG-PPSIVVAIAGNKCDLTDVREVMERDAKDYAD-----SIHAIFVETSAKNAININE 156 (167)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHS-CTTSEEEEEEECTTCGGGCCSCHHHHHHHHH-----HTTCEEEECBTTTTBSHHH
T ss_pred EeeechhhhhhhHHHhhhhhhhcc-CCcceEEEecccchhccccchhHHHHHHHHH-----HcCCEEEEEecCCCCCHHH
Confidence 999999999999999988775543 36789999999999965422 222222111 1234799999999999999
Q ss_pred HHHHHHHHhh
Q 030429 165 VIDWLIKHSK 174 (177)
Q Consensus 165 l~~~l~~~~~ 174 (177)
+|..|.+.++
T Consensus 157 ~f~~l~~~i~ 166 (167)
T d1z0ja1 157 LFIEISRRIP 166 (167)
T ss_dssp HHHHHHHHCC
T ss_pred HHHHHHHhCC
Confidence 9999999874
|
| >d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab4a species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=5.7e-34 Score=190.65 Aligned_cols=161 Identities=20% Similarity=0.316 Sum_probs=130.4
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEE----eCCEEEEEEecCCchhhHHhHHHHhcCCCEEE
Q 030429 10 KQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVT----KGNVTIKLWDLGGQRRFRTMWERYCRGVSAIL 85 (177)
Q Consensus 10 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~----~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i 85 (177)
...+||+++|.+|||||||++++.++.+...+.++.+....... .....+.+||+||++++...+..++..+++++
T Consensus 3 ~~~~KI~lvG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i 82 (174)
T d2bmea1 3 DFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAGAL 82 (174)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTSTTCSEEE
T ss_pred cEEEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccceeeEEEEecCcceeEEEEECCCchhhhhhHHHHhhhCCEEE
Confidence 45689999999999999999999999988888887776655432 23478999999999999999999999999999
Q ss_pred EEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccCH-HHHHHHhCcccccCCceeEEEeeecCCCChHH
Q 030429 86 YVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSK-QALVDQLGLESITDREVCCYMISCKDSINIDA 164 (177)
Q Consensus 86 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 164 (177)
+|+|.++++++..+..|+..+.... ..+.|+++|+||+|+...... .+....+. ....+++++|||++|.|+++
T Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piivv~nK~D~~~~~~~~~~~~~~~~----~~~~~~~~e~Sak~~~gi~e 157 (174)
T d2bmea1 83 LVYDITSRETYNALTNWLTDARMLA-SQNIVIILCGNKKDLDADREVTFLEASRFA----QENELMFLETSALTGENVEE 157 (174)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECGGGGGGCCSCHHHHHHHH----HHTTCEEEECCTTTCTTHHH
T ss_pred EEEecccchhHHHHhhhhccccccc-CCceEEEEEEecccccchhchhhhHHHHHH----HhCCCEEEEeeCCCCcCHHH
Confidence 9999999999999999999876643 357999999999998653322 11111211 11235899999999999999
Q ss_pred HHHHHHHHhhh
Q 030429 165 VIDWLIKHSKT 175 (177)
Q Consensus 165 l~~~l~~~~~~ 175 (177)
+|++|.+.+.+
T Consensus 158 ~f~~l~~~i~~ 168 (174)
T d2bmea1 158 AFVQCARKILN 168 (174)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999988764
|
| >d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-like estrogen-regulated growth inhibitor, RERG species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1e-33 Score=188.41 Aligned_cols=157 Identities=24% Similarity=0.261 Sum_probs=125.7
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEE-Ee--CCEEEEEEecCCchhhHHhHHHHhcCCCEEEEEE
Q 030429 12 EMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKV-TK--GNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVV 88 (177)
Q Consensus 12 ~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~-~~--~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~ 88 (177)
.+||+++|++|||||||+++++++.+...+.+|.+..+... .. ..+.+.+||++|+..+. ....++.+++++++|+
T Consensus 2 eiKi~lvG~~~vGKTsli~r~~~~~f~~~~~pTi~~~~~~~~~~~~~~~~l~i~D~~g~~~~~-~~~~~~~~~~~~ilv~ 80 (168)
T d2atva1 2 EVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQATIDDEVVSMEILDTAGQEDTI-QREGHMRWGEGFVLVY 80 (168)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCCCCH-HHHHHHHHCSEEEEEE
T ss_pred cEEEEEECCCCCCHHHHHHHHHhCCCCCccCCceeccccccccccccceEEEEeecccccccc-cchhhhcccccceeec
Confidence 58999999999999999999999999999999988665442 22 34789999999998775 4566788899999999
Q ss_pred eCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccc--CHHH---HHHHhCcccccCCceeEEEeeecCCC-Ch
Q 030429 89 DAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEAL--SKQA---LVDQLGLESITDREVCCYMISCKDSI-NI 162 (177)
Q Consensus 89 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~--~~~~---~~~~~~~~~~~~~~~~~~~~Sa~~~~-~i 162 (177)
|+++++++..+..|+..........+.|+++|+||+|+.+.. ..++ +.+.+ ++++++|||++|. ||
T Consensus 81 d~~~~~s~~~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~r~V~~~e~~~~a~~~--------~~~~~e~Saktg~gnV 152 (168)
T d2atva1 81 DITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDHSRQVSTEEGEKLATEL--------ACAFYECSACTGEGNI 152 (168)
T ss_dssp ETTCHHHHHTHHHHHHHHHHHHTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHH--------TSEEEECCTTTCTTCH
T ss_pred ccCCccchhhhhhhcccccccccccCcceeeeccchhhhhhccCcHHHHHHHHHHh--------CCeEEEEccccCCcCH
Confidence 999999999998876655444444678999999999986542 2222 33333 2379999999998 59
Q ss_pred HHHHHHHHHHhhhcC
Q 030429 163 DAVIDWLIKHSKTAK 177 (177)
Q Consensus 163 ~~l~~~l~~~~~~~~ 177 (177)
+++|..|.+.+.++|
T Consensus 153 ~e~F~~l~~~i~~~r 167 (168)
T d2atva1 153 TEIFYELCREVRRRR 167 (168)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhc
Confidence 999999999988764
|
| >d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab6 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=4.5e-34 Score=189.42 Aligned_cols=156 Identities=22% Similarity=0.361 Sum_probs=128.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEE----eCCEEEEEEecCCchhhHHhHHHHhcCCCEEEEEE
Q 030429 13 MELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVT----KGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVV 88 (177)
Q Consensus 13 ~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~----~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~ 88 (177)
+||+++|++|||||||++++.++.+...+.++.+....... ...+.+.+||++|++.+...+..++.++|++++|+
T Consensus 1 fKv~vvG~~~vGKTsLi~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~ilv~ 80 (164)
T d1yzqa1 1 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGQERFRSLIPSYIRDSAAAVVVY 80 (164)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEECSSCEEEEEEEEECCSGGGGGGHHHHHTTCSEEEEEE
T ss_pred CEEEEECCCCcCHHHHHHHHHhCCCCCccccceeeeccceeeccCCCceeeeecccCCcchhccchHHHhhccceEEEee
Confidence 58999999999999999999999998888888776655432 23588999999999999999999999999999999
Q ss_pred eCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccC--HHHHHHHhCcccccCCceeEEEeeecCCCChHHHH
Q 030429 89 DAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALS--KQALVDQLGLESITDREVCCYMISCKDSINIDAVI 166 (177)
Q Consensus 89 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~ 166 (177)
|++++.++..+..|+..+.... ....|+++|+||+|+.+... .++..+... ..++++++|||++|.||+++|
T Consensus 81 d~~~~~s~~~i~~~~~~~~~~~-~~~~~iilvgnK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~e~SAk~g~~v~e~f 154 (164)
T d1yzqa1 81 DITNVNSFQQTTKWIDDVRTER-GSDVIIMLVGNKTDLADKRQVSIEEGERKAK-----ELNVMFIETSAKAGYNVKQLF 154 (164)
T ss_dssp ETTCHHHHHTHHHHHHHHHHHH-TTSSEEEEEEECTTCGGGCCSCHHHHHHHHH-----HTTCEEEECCTTTCTTHHHHH
T ss_pred ccccccchhhhHhhHHHHHHhc-CCCceEEEEecccchhhhhhhhHHHHHHHHH-----HcCCEEEEecCCCCcCHHHHH
Confidence 9999999999999998876543 25789999999999865322 222222211 123479999999999999999
Q ss_pred HHHHHHhh
Q 030429 167 DWLIKHSK 174 (177)
Q Consensus 167 ~~l~~~~~ 174 (177)
++|.+.+.
T Consensus 155 ~~i~~~l~ 162 (164)
T d1yzqa1 155 RRVAAALP 162 (164)
T ss_dssp HHHHHHSC
T ss_pred HHHHHhhC
Confidence 99999874
|
| >d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rac species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=7e-34 Score=191.66 Aligned_cols=166 Identities=19% Similarity=0.230 Sum_probs=128.7
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEE-EEE--eCCEEEEEEecCCchhhHHhHHHHhcCCCEEE
Q 030429 9 FKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMR-KVT--KGNVTIKLWDLGGQRRFRTMWERYCRGVSAIL 85 (177)
Q Consensus 9 ~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~--~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i 85 (177)
.++.+||+++|.+|||||||+++|+++.+...+.+|.+.... .+. ...+.+.+||++|++.+......+++++|+++
T Consensus 2 ~p~~iKivviG~~~vGKTsli~~~~~~~f~~~~~~ti~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i 81 (183)
T d1mh1a_ 2 SPQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSL 81 (183)
T ss_dssp CCEEEEEEEECSTTSSHHHHHHHHHHSSCCSSCCCCSCCEEEEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEE
T ss_pred CceeEEEEEECCCCCCHHHHHHHHHhCCCCcccccceeeceeeeeeccCcceEEEeecccccccchhhhhhcccccceee
Confidence 367899999999999999999999999988888888774332 233 34578899999999999999999999999999
Q ss_pred EEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccCHHHHHHHhCccc----------ccCCceeEEEee
Q 030429 86 YVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLES----------ITDREVCCYMIS 155 (177)
Q Consensus 86 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~S 155 (177)
+|||++++++++++..|+....... ..+.|+++|+||+|+.+.....+......... ......+|++||
T Consensus 82 lv~d~~~~~sf~~i~~~~~~~~~~~-~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~E~S 160 (183)
T d1mh1a_ 82 ICFSLVSPASFENVRAKWYPEVRHH-CPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECS 160 (183)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHH-STTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECC
T ss_pred eeeccchHHHHHHHHHHHHHHHHHh-CCCCcEEEEeecccchhhhhhhhhhhhccccchhhHHHHHHHHHcCCceEEEcC
Confidence 9999999999999987666665542 35689999999999865432211111111000 012335899999
Q ss_pred ecCCCChHHHHHHHHHHhhh
Q 030429 156 CKDSINIDAVIDWLIKHSKT 175 (177)
Q Consensus 156 a~~~~~i~~l~~~l~~~~~~ 175 (177)
|++|.||+++|+.|++.+..
T Consensus 161 Ak~~~~V~e~F~~l~~~il~ 180 (183)
T d1mh1a_ 161 ALTQRGLKTVFDEAIRAVLC 180 (183)
T ss_dssp TTTCTTHHHHHHHHHHHHSC
T ss_pred CCCCcCHHHHHHHHHHHHcC
Confidence 99999999999999987754
|
| >d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab21 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=2.1e-33 Score=186.66 Aligned_cols=159 Identities=26% Similarity=0.316 Sum_probs=122.7
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEE--Ee--CCEEEEEEecCCchhhHHhHHHHhcCCCEEEE
Q 030429 11 QEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKV--TK--GNVTIKLWDLGGQRRFRTMWERYCRGVSAILY 86 (177)
Q Consensus 11 ~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~--~~--~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~ 86 (177)
..+||+++|++|||||||+++++++.+...+.+|.+...... .. ..+.+.+||++|+..+...+..+++++|++++
T Consensus 2 y~fKivlvG~~~vGKTsLi~r~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~ 81 (167)
T d1z08a1 2 YSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGAIL 81 (167)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC-------CCSSTTCSEEEE
T ss_pred ceEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccchheeeeccCCccceeeeeccCCcceecccchhhccCCceeEE
Confidence 468999999999999999999999999988888887555553 22 34889999999999999999999999999999
Q ss_pred EEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccC--HHHHHHHhCcccccCCceeEEEeeecCCCChHH
Q 030429 87 VVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALS--KQALVDQLGLESITDREVCCYMISCKDSINIDA 164 (177)
Q Consensus 87 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 164 (177)
|||++++++++.+..|+..+.... ....|+++|+||+|+.+... .++..+... ..++++++|||++|.||++
T Consensus 82 v~d~~~~~Sf~~~~~~~~~~~~~~-~~~~~~ilvgnK~Dl~~~~~v~~~e~~~~a~-----~~~~~~~e~Sak~~~~v~e 155 (167)
T d1z08a1 82 VYDITDEDSFQKVKNWVKELRKML-GNEICLCIVGNKIDLEKERHVSIQEAESYAE-----SVGAKHYHTSAKQNKGIEE 155 (167)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHH-GGGSEEEEEEECGGGGGGCCSCHHHHHHHHH-----HTTCEEEEEBTTTTBSHHH
T ss_pred EEeCCchhHHHhhhhhhhhccccc-ccccceeeeccccccccccccchHHHHHHHH-----HcCCeEEEEecCCCcCHHH
Confidence 999999999999999988764432 24678999999999876432 233222211 1234799999999999999
Q ss_pred HHHHHHHHhhh
Q 030429 165 VIDWLIKHSKT 175 (177)
Q Consensus 165 l~~~l~~~~~~ 175 (177)
+|++|++.+.+
T Consensus 156 ~F~~l~~~i~~ 166 (167)
T d1z08a1 156 LFLDLCKRMIE 166 (167)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHHHHHhh
Confidence 99999998754
|
| >d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab14 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=4.5e-34 Score=189.75 Aligned_cols=157 Identities=20% Similarity=0.302 Sum_probs=125.9
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEE--EEe--CCEEEEEEecCCchhhHHhHHHHhcCCCEEEE
Q 030429 11 QEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRK--VTK--GNVTIKLWDLGGQRRFRTMWERYCRGVSAILY 86 (177)
Q Consensus 11 ~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~--~~~--~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~ 86 (177)
..+||+++|++|||||||++++.++.+.....++....... ... ..+.+.+||+||++.+...+..+++.+|++++
T Consensus 3 y~~KivlvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~d~~il 82 (166)
T d1z0fa1 3 YIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALM 82 (166)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGGTCHHHHHHHHTCSEEEE
T ss_pred EEEEEEEECCCCcCHHHHHHHHHhCCCCCcccccccccceeEEEEECCEEEEEEEeccCCchhHHHHHHHHhcCCcEEEE
Confidence 45899999999999999999999998887777655544433 333 34689999999999999999999999999999
Q ss_pred EEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccC--HHHHHHHhCcccccCCceeEEEeeecCCCChHH
Q 030429 87 VVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALS--KQALVDQLGLESITDREVCCYMISCKDSINIDA 164 (177)
Q Consensus 87 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 164 (177)
|+|+++++++.....|+..+... .....|+++++||+|+.+... .++..+... ...+++++|||++|.||++
T Consensus 83 v~d~~~~~s~~~~~~~~~~~~~~-~~~~~~iilvgnK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~e~Saktg~~v~e 156 (166)
T d1z0fa1 83 VYDITRRSTYNHLSSWLTDARNL-TNPNTVIILIGNKADLEAQRDVTYEEAKQFAE-----ENGLLFLEASAKTGENVED 156 (166)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHH-SCTTCEEEEEEECTTCGGGCCSCHHHHHHHHH-----HTTCEEEECCTTTCTTHHH
T ss_pred EeccCchHHHHHHHHHHHHHHhh-ccccceEEEEcccccchhhcccHHHHHHHHHH-----HcCCEEEEEeCCCCCCHHH
Confidence 99999999999999988877554 335789999999999865432 222222211 1234799999999999999
Q ss_pred HHHHHHHHh
Q 030429 165 VIDWLIKHS 173 (177)
Q Consensus 165 l~~~l~~~~ 173 (177)
+|+.|.+.+
T Consensus 157 ~f~~i~~~i 165 (166)
T d1z0fa1 157 AFLEAAKKI 165 (166)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 999999875
|
| >d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab27b species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=2.5e-33 Score=189.37 Aligned_cols=162 Identities=20% Similarity=0.350 Sum_probs=129.8
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEE--EEe------------CCEEEEEEecCCchhhHHhHH
Q 030429 10 KQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRK--VTK------------GNVTIKLWDLGGQRRFRTMWE 75 (177)
Q Consensus 10 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~--~~~------------~~~~~~~~D~~g~~~~~~~~~ 75 (177)
...+||+++|++|||||||+++|+++.+.....++.+..... +.. ..+.+.+||++|++.+...+.
T Consensus 3 d~~~Ki~ivG~~~vGKTsLi~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~dt~G~e~~~~~~~ 82 (186)
T d2f7sa1 3 DYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERFRSLTT 82 (186)
T ss_dssp SEEEEEEEESCTTSSHHHHHHHHHCSCCCCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHHHHHHHHH
T ss_pred CEEEEEEEECCCCcCHHHHHHHHhcCCCCCccCCcccceeeEEEEEEecccccccccccceEEeccccCCcchhhHHHHH
Confidence 346899999999999999999999988887777666544333 211 236799999999999999999
Q ss_pred HHhcCCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccC--HHHHHHHhCcccccCCceeEEE
Q 030429 76 RYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALS--KQALVDQLGLESITDREVCCYM 153 (177)
Q Consensus 76 ~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 153 (177)
.+++++|++++|||++++.+++.+..|+..+.........|+++|+||+|+.+... .++..+... ..++++++
T Consensus 83 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iilv~nK~Dl~~~~~v~~~e~~~~~~-----~~~~~~~e 157 (186)
T d2f7sa1 83 AFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLPDQREVNERQARELAD-----KYGIPYFE 157 (186)
T ss_dssp HHHTTCCEEEEEEETTCHHHHHHHHHHHHTCCCCCTTTCCEEEEEEECTTCGGGCCSCHHHHHHHHH-----HTTCCEEE
T ss_pred HHHhcCCEEEEEEeccccccceeeeeccchhhhhccCCCceEEEEeeeccchhhhcchHHHHHHHHH-----HcCCEEEE
Confidence 99999999999999999999999999998877666667789999999999876432 222222111 12247999
Q ss_pred eeecCCCChHHHHHHHHHHhhhc
Q 030429 154 ISCKDSINIDAVIDWLIKHSKTA 176 (177)
Q Consensus 154 ~Sa~~~~~i~~l~~~l~~~~~~~ 176 (177)
|||++|.||+++|++|.+.+.++
T Consensus 158 ~Sak~~~~i~e~f~~l~~~i~~k 180 (186)
T d2f7sa1 158 TSAATGQNVEKAVETLLDLIMKR 180 (186)
T ss_dssp EBTTTTBTHHHHHHHHHHHHHHH
T ss_pred EeCCCCCCHHHHHHHHHHHHHHH
Confidence 99999999999999999987653
|
| >d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: CDC42 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1.1e-33 Score=191.81 Aligned_cols=164 Identities=18% Similarity=0.200 Sum_probs=127.7
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEE-EE--eCCEEEEEEecCCchhhHHhHHHHhcCCCEEEEE
Q 030429 11 QEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRK-VT--KGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYV 87 (177)
Q Consensus 11 ~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~-~~--~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v 87 (177)
+.+||+++|++|||||||+++|.++.+...+.+|.+..... .. ...+.+.+||++|++++...+..+++++|++++|
T Consensus 2 ~~iKvvllG~~~vGKTSli~r~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv 81 (191)
T d2ngra_ 2 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVC 81 (191)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEE
T ss_pred CceEEEEECCCCcCHHHHHHHHHhCCCCCCcCCceeeecceeEeeCCceeeeeccccccchhhhhhhhhcccccceeecc
Confidence 35899999999999999999999999988888888755433 22 2347899999999999999999999999999999
Q ss_pred EeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccCHHHHHHHhCcc----------cccCCceeEEEeeec
Q 030429 88 VDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLE----------SITDREVCCYMISCK 157 (177)
Q Consensus 88 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~Sa~ 157 (177)
||++++++|+++..|+....... ..+.|+++|+||+|+.+.....+........ .......+|++|||+
T Consensus 82 ~d~~~~~Sf~~~~~~~~~~~~~~-~~~~~i~lvgnK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk 160 (191)
T d2ngra_ 82 FSVVSPSSFENVKEKWVPEITHH-CPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSAL 160 (191)
T ss_dssp EETTCHHHHHHHHHTHHHHHHHH-CTTCCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHTTCSCEEECCTT
T ss_pred cccchHHHHHHHHHHHHHHHhhc-CCCCceEEEeccccccccchhhhhhhhcccccccHHHHHHHHHHcCCCeEEEEeCC
Confidence 99999999999988777765543 3579999999999987542211111100000 001133579999999
Q ss_pred CCCChHHHHHHHHHHhhh
Q 030429 158 DSINIDAVIDWLIKHSKT 175 (177)
Q Consensus 158 ~~~~i~~l~~~l~~~~~~ 175 (177)
+|.||+++|+.+++.+.+
T Consensus 161 ~~~~V~e~f~~l~~~~~~ 178 (191)
T d2ngra_ 161 TQKGLKNVFDEAILAALE 178 (191)
T ss_dssp TCTTHHHHHHHHHHHHTS
T ss_pred CCcCHHHHHHHHHHHHhc
Confidence 999999999999987654
|
| >d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ypt51 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=3.1e-34 Score=191.28 Aligned_cols=157 Identities=26% Similarity=0.379 Sum_probs=127.8
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEE--EEEeC--CEEEEEEecCCchhhHHhHHHHhcCCCEEEEE
Q 030429 12 EMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMR--KVTKG--NVTIKLWDLGGQRRFRTMWERYCRGVSAILYV 87 (177)
Q Consensus 12 ~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~--~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v 87 (177)
.+||+++|++|||||||++++.++.+...+.+|.+.... .+..+ .+.+.+||++|++.+...+..++..+|++++|
T Consensus 3 ~iKi~vvG~~~vGKTsLi~~~~~~~f~~~~~~t~~~~~~~~~i~~~~~~~~l~i~d~~g~~~~~~~~~~~~~~~~~~ilv 82 (170)
T d1ek0a_ 3 SIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLAPMYYRNAQAALVV 82 (170)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEEE
T ss_pred EEEEEEECCCCcCHHHHHHHHHhCCCCccccccccceeeccccccccccccccccccCCchhHHHHHHHHHhccceEEEE
Confidence 589999999999999999999999999988888875443 34443 47899999999999999999999999999999
Q ss_pred EeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccC-----HHHHHHHhCcccccCCceeEEEeeecCCCCh
Q 030429 88 VDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALS-----KQALVDQLGLESITDREVCCYMISCKDSINI 162 (177)
Q Consensus 88 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i 162 (177)
||.+++.++.+...|+....... ....|+++++||+|+.+... .++..+.. ...++++++|||++|.||
T Consensus 83 ~d~~~~~s~~~~~~~~~~~~~~~-~~~~~~~~v~nk~d~~~~~~~~~v~~~~~~~~~-----~~~~~~~~e~Sak~g~gV 156 (170)
T d1ek0a_ 83 YDVTKPQSFIKARHWVKELHEQA-SKDIIIALVGNKIDMLQEGGERKVAREEGEKLA-----EEKGLLFFETSAKTGENV 156 (170)
T ss_dssp EETTCHHHHHHHHHHHHHHHHHS-CTTCEEEEEEECGGGGGSSCCCCSCHHHHHHHH-----HHHTCEEEECCTTTCTTH
T ss_pred EeCCcccchhhhhhhhhhhcccc-ccccceeeeecccccccccchhhhhHHHHHHHH-----HHcCCEEEEecCCCCcCH
Confidence 99999999999999988765543 25689999999999865322 12222111 112357999999999999
Q ss_pred HHHHHHHHHHhh
Q 030429 163 DAVIDWLIKHSK 174 (177)
Q Consensus 163 ~~l~~~l~~~~~ 174 (177)
+++|+.|.+.+.
T Consensus 157 ~e~F~~i~~~i~ 168 (170)
T d1ek0a_ 157 NDVFLGIGEKIP 168 (170)
T ss_dssp HHHHHHHHTTSC
T ss_pred HHHHHHHHHHhc
Confidence 999999988765
|
| >d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab5a species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1.3e-33 Score=188.24 Aligned_cols=158 Identities=26% Similarity=0.373 Sum_probs=129.8
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEE--e--CCEEEEEEecCCchhhHHhHHHHhcCCCEEEEE
Q 030429 12 EMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVT--K--GNVTIKLWDLGGQRRFRTMWERYCRGVSAILYV 87 (177)
Q Consensus 12 ~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~--~--~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v 87 (177)
.+||+++|++|||||||+++|+++.+.....++.+....... . ..+.+.+||++|++.+...+..+++++|++++|
T Consensus 6 ~~Ki~vvG~~~vGKTsLi~~l~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~ilv 85 (170)
T d1r2qa_ 6 QFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVV 85 (170)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEEE
T ss_pred EEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccccccceeeccceEEEEEeccCCCchhhhhhHHHHhhCcceEEEE
Confidence 479999999999999999999999999888888887665532 2 247899999999999999999999999999999
Q ss_pred EeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccC--HHHHHHHhCcccccCCceeEEEeeecCCCChHHH
Q 030429 88 VDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALS--KQALVDQLGLESITDREVCCYMISCKDSINIDAV 165 (177)
Q Consensus 88 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l 165 (177)
+|.++++++.....|+..+... ..++.|+++|+||+|+.+... .++..+... ...+++++|||++|.||+++
T Consensus 86 ~d~~~~~s~~~~~~~~~~~~~~-~~~~~~iilvgnK~Dl~~~~~v~~e~~~~~~~-----~~~~~~~e~SAk~g~~V~e~ 159 (170)
T d1r2qa_ 86 YDITNEESFARAKNWVKELQRQ-ASPNIVIALSGNKADLANKRAVDFQEAQSYAD-----DNSLLFMETSAKTSMNVNEI 159 (170)
T ss_dssp EETTCHHHHHHHHHHHHHHHHH-SCTTCEEEEEEECGGGGGGCCSCHHHHHHHHH-----HTTCEEEECCTTTCTTHHHH
T ss_pred eccchhhHHHHHHHHhhhhhhc-cCCCceEEeecccccccccccccHHHHHHHHH-----hcCCEEEEeeCCCCCCHHHH
Confidence 9999999999999998887553 335789999999999876432 222222111 12348999999999999999
Q ss_pred HHHHHHHhhh
Q 030429 166 IDWLIKHSKT 175 (177)
Q Consensus 166 ~~~l~~~~~~ 175 (177)
|+.|.+.+.+
T Consensus 160 f~~l~~~i~~ 169 (170)
T d1r2qa_ 160 FMAIAKKLPK 169 (170)
T ss_dssp HHHHHHTSCC
T ss_pred HHHHHHHHhh
Confidence 9999988764
|
| >d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF1 [TaxId: 9606]
Probab=100.00 E-value=5.4e-32 Score=178.22 Aligned_cols=160 Identities=31% Similarity=0.599 Sum_probs=138.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEeCCEEEEEEecCCchhhHHhHHHHhcCCCEEEEEEeCCC
Q 030429 13 MELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAAD 92 (177)
Q Consensus 13 ~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~ 92 (177)
+||+++|++|||||||++++.++.+..... +........+...+.+.+||+||...+......++..++++++++|.++
T Consensus 1 ikivlvG~~~vGKSsLi~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~~~d~~~ 79 (160)
T d1r8sa_ 1 MRILMVGLDAAGKTTILYKLKLGEIVTTIP-TIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSND 79 (160)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHCSSCCCC-CSSCCEEEEECSSCEEEEEECCCCGGGHHHHHHHTTTCSEEEEEEETTC
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcccc-ceeeEEEEEeeeeEEEEEecCCCcccchhhhhhhhccceeEEEEEEecC
Confidence 589999999999999999999877655433 3344555677888999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccCHHHHHHHhCcccccCCceeEEEeeecCCCChHHHHHHHHHH
Q 030429 93 RDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCKDSINIDAVIDWLIKH 172 (177)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~ 172 (177)
+.++.....++............|+++++||.|+.+.....+..............+++++|||++|.|++++|++|.+.
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~k~d~~~~~~~~~i~~~~~~~~~~~~~~~~~~~SAktg~gi~e~~~~l~~~ 159 (160)
T d1r8sa_ 80 RERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQ 159 (160)
T ss_dssp GGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCSSCCEEEEECBTTTTBTHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhhcccCceEEEEeecccccccccHHHHHHHHHHHHHhhCCCEEEEeECCCCCCHHHHHHHHHhc
Confidence 99999999999999887766778999999999998877777777776666666677899999999999999999999886
Q ss_pred h
Q 030429 173 S 173 (177)
Q Consensus 173 ~ 173 (177)
+
T Consensus 160 l 160 (160)
T d1r8sa_ 160 L 160 (160)
T ss_dssp C
T ss_pred C
Confidence 4
|
| >d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab11b species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=7.9e-33 Score=185.20 Aligned_cols=158 Identities=22% Similarity=0.339 Sum_probs=125.0
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEE--EEeC--CEEEEEEecCCchhhHHhHHHHhcCCCEEEE
Q 030429 11 QEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRK--VTKG--NVTIKLWDLGGQRRFRTMWERYCRGVSAILY 86 (177)
Q Consensus 11 ~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~--~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~ 86 (177)
..+||+++|++|||||||++++.++.+...+.++.+..... +..+ .+.+.+||++|++.+...+..+++++|++++
T Consensus 3 ~~~Ki~vvG~~~vGKTsLi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~e~~~~~~~~~~~~~~~~i~ 82 (175)
T d2f9la1 3 YLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGALL 82 (175)
T ss_dssp EEEEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCCCHHHHTTCSEEEE
T ss_pred EEEEEEEECCCCcCHHHHHHHHHhCCCCCcccccccceeeeEEEEECCEEEEEEecccCCcHHHHHHHHHHhhccCeEEE
Confidence 45899999999999999999999998887777766644433 3344 4788999999999999989999999999999
Q ss_pred EEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccc--CHHHHHHHhCcccccCCceeEEEeeecCCCChHH
Q 030429 87 VVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEAL--SKQALVDQLGLESITDREVCCYMISCKDSINIDA 164 (177)
Q Consensus 87 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 164 (177)
|+|.++++++.....|+..+..... ++.|+++|+||+|+.+.. ..+....... ....++++|||++|.|+++
T Consensus 83 v~d~~~~~S~~~~~~~~~~i~~~~~-~~~piilvgnK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~e~Sa~~g~~i~e 156 (175)
T d2f9la1 83 VYDIAKHLTYENVERWLKELRDHAD-SNIVIMLVGNKSDLRHLRAVPTDEARAFAE-----KNNLSFIETSALDSTNVEE 156 (175)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHSC-TTCEEEEEEECTTCGGGCCSCHHHHHHHHH-----HTTCEEEECCTTTCTTHHH
T ss_pred EEECCCcccchhHHHHHHHHHHhcC-CCCcEEEEEeeecccccccchHHHHHHhhc-----ccCceEEEEecCCCcCHHH
Confidence 9999999999999999988866543 568999999999987542 2222222111 1234799999999999999
Q ss_pred HHHHHHHHhh
Q 030429 165 VIDWLIKHSK 174 (177)
Q Consensus 165 l~~~l~~~~~ 174 (177)
+|+.+.+.+.
T Consensus 157 ~f~~l~~~i~ 166 (175)
T d2f9la1 157 AFKNILTEIY 166 (175)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999988764
|
| >d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein ypt7p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=1.7e-32 Score=183.56 Aligned_cols=162 Identities=25% Similarity=0.436 Sum_probs=115.4
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEE-----eCCEEEEEEecCCchhhHHhHHHHhcCCCEEEE
Q 030429 12 EMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVT-----KGNVTIKLWDLGGQRRFRTMWERYCRGVSAILY 86 (177)
Q Consensus 12 ~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~-----~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~ 86 (177)
-+||+++|++|||||||+++|.++.+...+.++.+....... .....+.+||++|++.+...+..+++.++++++
T Consensus 2 ~~Ki~~vG~~~vGKSsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~il 81 (175)
T d1ky3a_ 2 ILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAFYRGADCCVL 81 (175)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC----------CCSTTCCEEEE
T ss_pred eEEEEEECCCCcCHHHHHHHHHcCCCCCccCcccccceeeeeeeecCcccccceeeccCCchhhhhHHHHHhhccceEEE
Confidence 589999999999999999999999888887777665544432 234678999999999999999999999999999
Q ss_pred EEeCCCCCCHHHHHHHHHHHHcC---CCCCCCcEEEEeeCCCcccccC--HHHHHHHhCcccccCCceeEEEeeecCCCC
Q 030429 87 VVDAADRDSVPIARSELHELLMK---PSLSGIPLLVLGNKIDKSEALS--KQALVDQLGLESITDREVCCYMISCKDSIN 161 (177)
Q Consensus 87 v~d~~~~~~~~~~~~~~~~~~~~---~~~~~~~~iiv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 161 (177)
|+|++++.+++....|+..+... .....+|+++|+||+|+.+... ..+..+.+.. .....++++|||++|.|
T Consensus 82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~nK~Dl~~~~~~v~~~~~~~~~~---~~~~~~~~e~SA~~g~g 158 (175)
T d1ky3a_ 82 VYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKIVSEKSAQELAK---SLGDIPLFLTSAKNAIN 158 (175)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGCCSCHHHHHHHHH---HTTSCCEEEEBTTTTBS
T ss_pred EeecccccccchhhhcchhhhhhhhhcccccCcEEEEecccchhhhhcchhHHHHHHHHH---HcCCCeEEEEeCCCCcC
Confidence 99999999999999888877542 3335789999999999875422 1111112111 11234689999999999
Q ss_pred hHHHHHHHHHHhhhc
Q 030429 162 IDAVIDWLIKHSKTA 176 (177)
Q Consensus 162 i~~l~~~l~~~~~~~ 176 (177)
|+++|++|++.+.++
T Consensus 159 v~e~f~~l~~~~l~~ 173 (175)
T d1ky3a_ 159 VDTAFEEIARSALQQ 173 (175)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhc
Confidence 999999999876654
|
| >d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab18 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1.4e-32 Score=184.23 Aligned_cols=162 Identities=22% Similarity=0.386 Sum_probs=132.1
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEE--EEe--CCEEEEEEecCCchhhHHhHHHHhcCCCEEEE
Q 030429 11 QEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRK--VTK--GNVTIKLWDLGGQRRFRTMWERYCRGVSAILY 86 (177)
Q Consensus 11 ~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~--~~~--~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~ 86 (177)
..+||+++|.+|||||||++++.++.+.....++.+..... +.. ..+.+.+|||||++++...+..++.++|++++
T Consensus 6 ~~iKi~vvG~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ii~ 85 (177)
T d1x3sa1 6 TTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRGAQGVIL 85 (177)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCCSHHHHHTTCCEEEE
T ss_pred ceeEEEEECCCCcCHHHHHHHHHhCCCCCccccceeecceeEEEEEeccccEEEEEECCCchhhHHHHHHHHhcCCEEEE
Confidence 46899999999999999999999999888877766654433 343 34789999999999999999999999999999
Q ss_pred EEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccC-HHHHHHHhCcccccCCceeEEEeeecCCCChHHH
Q 030429 87 VVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALS-KQALVDQLGLESITDREVCCYMISCKDSINIDAV 165 (177)
Q Consensus 87 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l 165 (177)
|+|++++.++.....|+..+.........|+++++||.|..+... .++..+... ..+++++++||++|.|++++
T Consensus 86 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~i~~~~nk~d~~~~~v~~~~~~~~~~-----~~~~~~~e~Sa~tg~gv~e~ 160 (177)
T d1x3sa1 86 VYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKENREVDRNEGLKFAR-----KHSMLFIEASAKTCDGVQCA 160 (177)
T ss_dssp EEETTCHHHHHTHHHHHHHHTTCCSCSCCEEEEEEECTTSSSCCSCHHHHHHHHH-----HTTCEEEECCTTTCTTHHHH
T ss_pred EEECCCccccccchhhhhhhcccccccceeeEEEeeccccccccccHHHHHHHHH-----HCCCEEEEEeCCCCCCHHHH
Confidence 999999999999999999987766666789999999999865432 222222211 12347999999999999999
Q ss_pred HHHHHHHhhhcC
Q 030429 166 IDWLIKHSKTAK 177 (177)
Q Consensus 166 ~~~l~~~~~~~~ 177 (177)
|++|.+.+.+.|
T Consensus 161 f~~l~~~l~~~p 172 (177)
T d1x3sa1 161 FEELVEKIIQTP 172 (177)
T ss_dssp HHHHHHHHHTSG
T ss_pred HHHHHHHHccCc
Confidence 999999887653
|
| >d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL5A [TaxId: 9606]
Probab=100.00 E-value=1e-31 Score=179.88 Aligned_cols=168 Identities=28% Similarity=0.522 Sum_probs=141.8
Q ss_pred cccccceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEeCCEEEEEEecCCchhhHHhHHHHhcCCCEEE
Q 030429 6 SLFFKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAIL 85 (177)
Q Consensus 6 ~~~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i 85 (177)
.+..++.+||+++|.+|||||||++++.++.+.. ..++.+.........+..+.+||+++.+.....+..++..+++++
T Consensus 9 ~~~~~k~~kI~vvG~~~~GKSsLi~rl~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~i 87 (177)
T d1zj6a1 9 RLFNHQEHKVIIVGLDNAGKTTILYQFSMNEVVH-TSPTIGSNVEEIVINNTRFLMWDIGGQESLRSSWNTYYTNTEFVI 87 (177)
T ss_dssp HHHTTSCEEEEEEESTTSSHHHHHHHHHTTSCEE-EECCSCSSCEEEEETTEEEEEEECCC----CGGGHHHHTTCCEEE
T ss_pred HHhCCCeEEEEEECCCCCCHHHHHHHHhcCCCCc-cccccceeEEEEeecceEEEEeccccccccccchhhhhccceeee
Confidence 3556888999999999999999999999876653 334556666777788999999999999998888889999999999
Q ss_pred EEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccCHHHHHHHhCcccccCCceeEEEeeecCCCChHHH
Q 030429 86 YVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCKDSINIDAV 165 (177)
Q Consensus 86 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l 165 (177)
+++|.++..++.....++............|+++|+||+|+......++..+.+.......+.++++++||++|+|++++
T Consensus 88 ~v~d~~d~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~tg~Gi~e~ 167 (177)
T d1zj6a1 88 VVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQG 167 (177)
T ss_dssp EEEETTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTGGGCCSSCEEEEECBTTTTBTHHHH
T ss_pred eecccccccchhhhhhhhhhhhhcccccceEEEEEEEcccccccCcHHHHHHHHHHHhhHhcCCEEEEEeCCCCCCHHHH
Confidence 99999999999998887777766666678999999999999888777888888877777777889999999999999999
Q ss_pred HHHHHHHhh
Q 030429 166 IDWLIKHSK 174 (177)
Q Consensus 166 ~~~l~~~~~ 174 (177)
+++|.+.++
T Consensus 168 ~~~L~~~lk 176 (177)
T d1zj6a1 168 LEWMMSRLK 176 (177)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHHHhC
Confidence 999999874
|
| >d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Ytp1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=2.1e-33 Score=190.89 Aligned_cols=160 Identities=27% Similarity=0.397 Sum_probs=129.7
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEE--EE--eCCEEEEEEecCCchhhHHhHHHHhcCCCEEE
Q 030429 10 KQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRK--VT--KGNVTIKLWDLGGQRRFRTMWERYCRGVSAIL 85 (177)
Q Consensus 10 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~--~~--~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i 85 (177)
...+||+++|++|||||||++++.++.+...+.++.+..... +. ...+.+.+|||||++++...+..+++.+++++
T Consensus 4 ~~~~KivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~~i 83 (194)
T d2bcgy1 4 DYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSHGII 83 (194)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGGTTCSEEE
T ss_pred CEEEEEEEECCCCcCHHHHHHHHhhCCCCCCcCCccceeEEEEEEEEeeEEEEEEEEECCCchhhHHHHHHHhccCCEEE
Confidence 345899999999999999999999999888888887765543 33 34578999999999999999999999999999
Q ss_pred EEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccC--HHHHHHHhCcccccCCceeEEEeeecCCCChH
Q 030429 86 YVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALS--KQALVDQLGLESITDREVCCYMISCKDSINID 163 (177)
Q Consensus 86 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 163 (177)
+|+|+++++++.....++..+... .....|+++|+||+|+.+... .++...... ....+++++||++|.||+
T Consensus 84 ~v~d~t~~~s~~~~~~~~~~~~~~-~~~~~~iilv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~e~SAk~g~gi~ 157 (194)
T d2bcgy1 84 IVYDVTDQESFNGVKMWLQEIDRY-ATSTVLKLLVGNKCDLKDKRVVEYDVAKEFAD-----ANKMPFLETSALDSTNVE 157 (194)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHH-SCTTCEEEEEEECTTCTTTCCSCHHHHHHHHH-----HTTCCEEECCTTTCTTHH
T ss_pred EEEeCcchhhhhhHhhhhhhhhhc-ccCCceEEEEEeccccccccchhHHHHhhhhh-----ccCcceEEEecCcCccHH
Confidence 999999999999999888877543 346789999999999876432 222222211 123479999999999999
Q ss_pred HHHHHHHHHhhh
Q 030429 164 AVIDWLIKHSKT 175 (177)
Q Consensus 164 ~l~~~l~~~~~~ 175 (177)
++|+.|.+.+.+
T Consensus 158 e~f~~l~~~i~~ 169 (194)
T d2bcgy1 158 DAFLTMARQIKE 169 (194)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999988764
|
| >d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab2b species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1.2e-32 Score=183.94 Aligned_cols=159 Identities=20% Similarity=0.295 Sum_probs=122.7
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEE--EE--eCCEEEEEEecCCchhhHHhHHHHhcCCCEEEE
Q 030429 11 QEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRK--VT--KGNVTIKLWDLGGQRRFRTMWERYCRGVSAILY 86 (177)
Q Consensus 11 ~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~--~~--~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~ 86 (177)
..+||+++|++|||||||++++.++.+...+.++....... .. ...+.+.+||++|+..+...+..++..+|++++
T Consensus 2 y~~KivvvG~~~vGKTsli~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~il 81 (173)
T d2a5ja1 2 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALL 81 (173)
T ss_dssp EEEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEETTEEEEEEEECCTTGGGTSCCCHHHHTTCSEEEE
T ss_pred eeEEEEEECCCCcCHHHHHHHHhcCCCCCCcccceeeccceeeeeeeeeEEEEEeecccCccchhhHHHHHhhccCEEEE
Confidence 35799999999999999999999988877766655433333 22 234788999999999999999999999999999
Q ss_pred EEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccC--HHHHHHHhCcccccCCceeEEEeeecCCCChHH
Q 030429 87 VVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALS--KQALVDQLGLESITDREVCCYMISCKDSINIDA 164 (177)
Q Consensus 87 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 164 (177)
|+|++++++++....|+..+.... ..+.|+++|+||+|+..... .++...... ..++++++|||++|.||++
T Consensus 82 v~d~~~~~sf~~~~~~~~~~~~~~-~~~~piilv~nK~D~~~~~~~~~~~~~~~a~-----~~~~~~~e~Sa~tg~~V~e 155 (173)
T d2a5ja1 82 VYDITRRETFNHLTSWLEDARQHS-SSNMVIMLIGNKSDLESRRDVKREEGEAFAR-----EHGLIFMETSAKTACNVEE 155 (173)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECTTCGGGCCSCHHHHHHHHH-----HHTCEEEEECTTTCTTHHH
T ss_pred EEeecChHHHHhHHHHHHHHHHhC-CCCCeEEEEecCCchhhhhhhHHHHHHHHHH-----HcCCEEEEecCCCCCCHHH
Confidence 999999999999999998886543 35789999999999765322 222222111 1224799999999999999
Q ss_pred HHHHHHHHhhh
Q 030429 165 VIDWLIKHSKT 175 (177)
Q Consensus 165 l~~~l~~~~~~ 175 (177)
+|+.|.+.+.+
T Consensus 156 ~f~~i~~~i~~ 166 (173)
T d2a5ja1 156 AFINTAKEIYR 166 (173)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999997654
|
| >d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein Sec4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=9.7e-33 Score=183.28 Aligned_cols=160 Identities=24% Similarity=0.374 Sum_probs=124.0
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEE--EEe--CCEEEEEEecCCchhhHHhHHHHhcCCCEEEEE
Q 030429 12 EMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRK--VTK--GNVTIKLWDLGGQRRFRTMWERYCRGVSAILYV 87 (177)
Q Consensus 12 ~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~--~~~--~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v 87 (177)
-+||+++|.+|||||||+++++++.+...+.+|.+..... +.. ..+.+.+|||||++.+...+..+++++|++++|
T Consensus 2 ~~Ki~vvG~~~vGKTSli~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v 81 (166)
T d1g16a_ 2 IMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRGAMGIILV 81 (166)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHCCCCC-------CCEEEEEEESSSCEEEEEEECCTTGGGTSCCCHHHHTTEEEEEEE
T ss_pred EEEEEEECCCCcCHHHHHHHHHhCCCCCccCCccceeEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhcCCEEEEE
Confidence 4799999999999999999999999888888887755554 333 347888999999999999999999999999999
Q ss_pred EeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccCHHHHHHHhCcccccCCceeEEEeeecCCCChHHHHH
Q 030429 88 VDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCKDSINIDAVID 167 (177)
Q Consensus 88 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~ 167 (177)
+|.+++++++....++....... ....|++++++|.|..+.....+..+.+.. ..++++++|||++|.|++++|+
T Consensus 82 ~d~~~~~s~~~~~~~~~~~~~~~-~~~~~~i~~~~k~d~~~~~~~~~~~~~~~~----~~~~~~~~~Sa~~~~~v~e~f~ 156 (166)
T d1g16a_ 82 YDITDERTFTNIKQWFKTVNEHA-NDEAQLLLVGNKSDMETRVVTADQGEALAK----ELGIPFIESSAKNDDNVNEIFF 156 (166)
T ss_dssp EETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECTTCTTCCSCHHHHHHHHH----HHTCCEEECBTTTTBSHHHHHH
T ss_pred EECCCccCHHHHHhhhhhhhccc-cCcceeeeecchhhhhhhhhhHHHHHHHHH----hcCCeEEEECCCCCCCHHHHHH
Confidence 99999999999888877765543 356789999999998765433332332221 1234799999999999999999
Q ss_pred HHHHHhhhc
Q 030429 168 WLIKHSKTA 176 (177)
Q Consensus 168 ~l~~~~~~~ 176 (177)
+|++.+.++
T Consensus 157 ~l~~~i~~k 165 (166)
T d1g16a_ 157 TLAKLIQEK 165 (166)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHhc
Confidence 999988764
|
| >d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoE (RND3) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=1e-32 Score=185.23 Aligned_cols=157 Identities=17% Similarity=0.265 Sum_probs=125.1
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEE-EEE--eCCEEEEEEecCCchhhHHhHHHHhcCCCEEEEEE
Q 030429 12 EMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMR-KVT--KGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVV 88 (177)
Q Consensus 12 ~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~--~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~ 88 (177)
+.||+++|++|||||||++++.++.+...+.+|.+.... ... ...+.+++||++|++.+......+++++|++++||
T Consensus 2 ~~KivliG~~~vGKTsli~r~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~ 81 (179)
T d1m7ba_ 2 KCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICF 81 (179)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEECSSCEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEE
T ss_pred ceEEEEECCCCcCHHHHHHHHHhCCCCCccCCceeecccccccccceEEeeccccccccccccccccchhhhhhhhheee
Confidence 479999999999999999999999998888887653333 233 34588999999999999988888999999999999
Q ss_pred eCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccCH--------------H---HHHHHhCcccccCCceeE
Q 030429 89 DAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSK--------------Q---ALVDQLGLESITDREVCC 151 (177)
Q Consensus 89 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~--------------~---~~~~~~~~~~~~~~~~~~ 151 (177)
|++++++|+.+..++........ .+.|+++|+||+|+...... + .+.+.+ ...+|
T Consensus 82 d~~~~~Sf~~~~~~~~~~~~~~~-~~~~iilVgnK~Dl~~~~~~~~~~~~~~~~~V~~~e~~~~a~~~-------~~~~y 153 (179)
T d1m7ba_ 82 DISRPETLDSVLKKWKGEIQEFC-PNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQI-------GAATY 153 (179)
T ss_dssp ETTCHHHHHHHHHTHHHHHHHHC-TTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHH-------TCSEE
T ss_pred ecccCCCHHHHHHHHHHHHhccC-CcceEEEEEecccccccchhhHHHhhhhcCcchHHHHHHHHHHh-------CCCeE
Confidence 99999999999888877655432 47899999999998653111 1 111111 12479
Q ss_pred EEeeecCCC-ChHHHHHHHHHHhhhc
Q 030429 152 YMISCKDSI-NIDAVIDWLIKHSKTA 176 (177)
Q Consensus 152 ~~~Sa~~~~-~i~~l~~~l~~~~~~~ 176 (177)
++|||++|. +++++|+.+.+.+.++
T Consensus 154 ~E~SAk~~~n~i~~~F~~~~~~~l~k 179 (179)
T d1m7ba_ 154 IECSALQSENSVRDIFHVATLACVNK 179 (179)
T ss_dssp EECBTTTBHHHHHHHHHHHHHHHHTC
T ss_pred EEEeCCCCCcCHHHHHHHHHHHHhcC
Confidence 999999998 4999999999988654
|
| >d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab7 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.98 E-value=1.8e-32 Score=184.87 Aligned_cols=161 Identities=23% Similarity=0.410 Sum_probs=129.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEE----eCCEEEEEEecCCchhhHHhHHHHhcCCCEEEEEE
Q 030429 13 MELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVT----KGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVV 88 (177)
Q Consensus 13 ~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~----~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~ 88 (177)
+||+++|.+|||||||+++++++.+...+.+|.+....... ...+.+.+||++|+..+...+..++..+|++++|+
T Consensus 3 ~Kv~vvG~~~vGKSSLi~~l~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~~~ 82 (184)
T d1vg8a_ 3 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCCVLVF 82 (184)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSCSCCGGGTTCSEEEEEE
T ss_pred EEEEEECCCCcCHHHHHHHHHhCCCCCCcCCccceeeeeeeeeeCCceEEEEeeecCCcccccccccccccCccEEEEee
Confidence 79999999999999999999999999888888876655533 34578999999999998888888999999999999
Q ss_pred eCCCCCCHHHHHHHHHHHHcC---CCCCCCcEEEEeeCCCcccccCHHHHHHHhCcccccCCceeEEEeeecCCCChHHH
Q 030429 89 DAADRDSVPIARSELHELLMK---PSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCKDSINIDAV 165 (177)
Q Consensus 89 d~~~~~~~~~~~~~~~~~~~~---~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l 165 (177)
|.+++.++..+..|+..+... ......|+++|+||+|+.+.....+..+.+. ......++++|||++|.||+++
T Consensus 83 d~~~~~~~~~~~~~~~~i~~~~~~~~~~~ip~ilv~nK~Dl~~~~~~~~~~~~~~---~~~~~~~~~e~Sak~~~gI~e~ 159 (184)
T d1vg8a_ 83 DVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLENRQVATKRAQAWC---YSKNNIPYFETSAKEAINVEQA 159 (184)
T ss_dssp ETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSSCCCSCHHHHHHHH---HHTTSCCEEECBTTTTBSHHHH
T ss_pred cccchhhhhcchhhHHHHHHHhccccccCCCEEEEEEeecccccchhHHHHHHHH---HHhcCCeEEEEcCCCCcCHHHH
Confidence 999999999998888766543 2234689999999999876443322222221 1123457999999999999999
Q ss_pred HHHHHHHhhhc
Q 030429 166 IDWLIKHSKTA 176 (177)
Q Consensus 166 ~~~l~~~~~~~ 176 (177)
|++|++.+.++
T Consensus 160 f~~l~~~i~~~ 170 (184)
T d1vg8a_ 160 FQTIARNALKQ 170 (184)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHhc
Confidence 99999877653
|
| >d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab8a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.98 E-value=6.2e-33 Score=185.40 Aligned_cols=161 Identities=24% Similarity=0.403 Sum_probs=100.6
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEE--EEEeC--CEEEEEEecCCchhhHHhHHHHhcCCCEEE
Q 030429 10 KQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMR--KVTKG--NVTIKLWDLGGQRRFRTMWERYCRGVSAIL 85 (177)
Q Consensus 10 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~--~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i 85 (177)
.+-+||+++|.+|||||||+++|.++.+.....++.+.... .+..+ .+.+.+||+||++.+...+..+++++|+++
T Consensus 4 ~~~~Ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~e~~~~~~~~~~~~~~~~i 83 (173)
T d2fu5c1 4 DYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIM 83 (173)
T ss_dssp SEEEEEEEECCCCC----------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC---------CCTTTTTCSEEE
T ss_pred cEEEEEEEECCCCcCHHHHHHHHHhCCCCCccCccccceEEEEEEEECCEEEEEEEEECCCchhhHHHHHHhccCCCEEE
Confidence 45689999999999999999999988887777777664443 34444 477889999999999999999999999999
Q ss_pred EEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccC--HHHHHHHhCcccccCCceeEEEeeecCCCChH
Q 030429 86 YVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALS--KQALVDQLGLESITDREVCCYMISCKDSINID 163 (177)
Q Consensus 86 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 163 (177)
+|+|++++.++..+..|+..+... .....|+++|+||.|...... .++..+.. ...++++++|||++|.||+
T Consensus 84 ~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~~iilv~~k~D~~~~~~~~~~~~~~~~-----~~~~~~~~e~Sa~~g~gv~ 157 (173)
T d2fu5c1 84 LVYDITNEKSFDNIRNWIRNIEEH-ASADVEKMILGNKCDVNDKRQVSKERGEKLA-----LDYGIKFMETSAKANINVE 157 (173)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHH-SCTTCEEEEEEEC--CCSCCCSCHHHHHHHH-----HHHTCEEEECCC---CCHH
T ss_pred EEEECCChhhHHHHHHHHHHhhhh-ccCCceEEEEEecccchhhcccHHHHHHHHH-----HhcCCEEEEEeCCCCCCHH
Confidence 999999999999999998887543 336789999999999876432 22222221 1123579999999999999
Q ss_pred HHHHHHHHHhhhc
Q 030429 164 AVIDWLIKHSKTA 176 (177)
Q Consensus 164 ~l~~~l~~~~~~~ 176 (177)
++|++|++.+.++
T Consensus 158 e~f~~l~~~i~~k 170 (173)
T d2fu5c1 158 NAFFTLARDIKAK 170 (173)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 9999999988754
|
| >d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab26 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.97 E-value=2e-31 Score=177.50 Aligned_cols=160 Identities=25% Similarity=0.422 Sum_probs=118.5
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcCCCCCCC-CCccceeEEE--EEeCC--EEEEEEecCCchhhHHhHHHHhcCCCEE
Q 030429 10 KQEMELSLIGLQNAGKTSLVNTIATGGYSEDM-IPTVGFNMRK--VTKGN--VTIKLWDLGGQRRFRTMWERYCRGVSAI 84 (177)
Q Consensus 10 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~-~~t~~~~~~~--~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~~ 84 (177)
...+||+++|++|||||||++++.++.+.... .++.+..... +...+ +.+++|||||++.+...+..+++++|++
T Consensus 4 d~~fKi~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~~d~~ 83 (170)
T d2g6ba1 4 DVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHAYYRDAHAL 83 (170)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC--------CCGGGCSEE
T ss_pred ceEEEEEEECCCCcCHHHHHHHHHhCCCCcccccceeeeeeEEEEEEecCcEEEEEEEECCCchhhHHHHHHhhcCCcee
Confidence 45689999999999999999999988875444 4445545444 33333 6889999999999999999999999999
Q ss_pred EEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccC--HHHHHHHhCcccccCCceeEEEeeecCCCCh
Q 030429 85 LYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALS--KQALVDQLGLESITDREVCCYMISCKDSINI 162 (177)
Q Consensus 85 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i 162 (177)
++|+|.++++++.....++........ ...|+++|+||+|..+... .++..+... ..++++++|||++|.||
T Consensus 84 i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~iilv~~k~d~~~~~~v~~~~~~~~~~-----~~~~~~~e~Sak~g~gi 157 (170)
T d2g6ba1 84 LLLYDVTNKASFDNIQAWLTEIHEYAQ-HDVALMLLGNKVDSAHERVVKREDGEKLAK-----EYGLPFMETSAKTGLNV 157 (170)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHSC-TTCEEEEEEECCSTTSCCCSCHHHHHHHHH-----HHTCCEEECCTTTCTTH
T ss_pred EEEecCCcccchhhhhhhhhhhhhccC-CCceEEEEEeeechhhcccccHHHHHHHHH-----HcCCEEEEEeCCCCcCH
Confidence 999999999999999999887765432 5689999999999876433 222222111 11347999999999999
Q ss_pred HHHHHHHHHHhhh
Q 030429 163 DAVIDWLIKHSKT 175 (177)
Q Consensus 163 ~~l~~~l~~~~~~ 175 (177)
+++|++|++.+++
T Consensus 158 ~e~f~~l~~~i~k 170 (170)
T d2g6ba1 158 DLAFTAIAKELKR 170 (170)
T ss_dssp HHHHHHHHHHHHC
T ss_pred HHHHHHHHHHcCC
Confidence 9999999998764
|
| >d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein GEM species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.97 E-value=2.1e-31 Score=177.73 Aligned_cols=162 Identities=20% Similarity=0.174 Sum_probs=118.6
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhcCCCCC-CCCCccceeE--EEEEe--CCEEEEEEecCCchhh-HHhHHHHhcCCCEE
Q 030429 11 QEMELSLIGLQNAGKTSLVNTIATGGYSE-DMIPTVGFNM--RKVTK--GNVTIKLWDLGGQRRF-RTMWERYCRGVSAI 84 (177)
Q Consensus 11 ~~~~i~i~G~~~~GKSsli~~l~~~~~~~-~~~~t~~~~~--~~~~~--~~~~~~~~D~~g~~~~-~~~~~~~~~~~d~~ 84 (177)
..+||+++|++|||||||++++.+..+.. ...++.+... ..+.. ..+.+.+||+++.... ......+++++|++
T Consensus 2 ~~~Kv~lvG~~~vGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~~~~g~e~~~~~~~~~~~~~~ 81 (172)
T d2g3ya1 2 TYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVGDAY 81 (172)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHCCCCTTCCC---CCTTEEEEEEEETTEEEEEEEECCTTTTHHHHHHHHCCCCCCSEE
T ss_pred CEEEEEEECCCCcCHHHHHHHHHhCcCCccccccceeeecceeeeccCCceeeeeeecccccccccccccccccccccee
Confidence 35899999999999999999999765543 3334444332 23333 4567889998753222 12456678999999
Q ss_pred EEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccC--HHHHHHHhCcccccCCceeEEEeeecCCCCh
Q 030429 85 LYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALS--KQALVDQLGLESITDREVCCYMISCKDSINI 162 (177)
Q Consensus 85 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i 162 (177)
++|||++++.++.++..|+..+.......+.|+++|+||+|+.+... .++.. .+. ...++++++|||++|.||
T Consensus 82 ilvfd~t~~~s~~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~~v~~~~~~-~~a----~~~~~~~~e~Sak~g~~i 156 (172)
T d2g3ya1 82 LIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRCREVSVSEGR-ACA----VVFDCKFIETSAAVQHNV 156 (172)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHTSGGGTTSCEEEEEECTTCGGGCCSCHHHHH-HHH----HHHTCEEEECBTTTTBSH
T ss_pred eeeecccccchhhhhhhhhhhhhhccccCCceEEEEeccccccccccccHHHHH-HHH----HHcCCeEEEEeCCCCcCH
Confidence 99999999999999999999887765556899999999999876422 22221 111 111347999999999999
Q ss_pred HHHHHHHHHHhhhcC
Q 030429 163 DAVIDWLIKHSKTAK 177 (177)
Q Consensus 163 ~~l~~~l~~~~~~~~ 177 (177)
+++|+.|++.+..+|
T Consensus 157 ~~~f~~l~~~i~~rr 171 (172)
T d2g3ya1 157 KELFEGIVRQVRLRR 171 (172)
T ss_dssp HHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHcc
Confidence 999999999988765
|
| >d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL1 [TaxId: 9606]
Probab=99.97 E-value=4.6e-30 Score=170.16 Aligned_cols=167 Identities=34% Similarity=0.658 Sum_probs=146.4
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEeCCEEEEEEecCCchhhHHhHHHHhcCCCEEEEEEe
Q 030429 10 KQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVD 89 (177)
Q Consensus 10 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d 89 (177)
.+.+||+++|.+|||||||++++.++.+.. ..++.+........+++.+.+||.++...............+++++++|
T Consensus 3 ~ke~kI~ivG~~~vGKSSLi~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (169)
T d1upta_ 3 TREMRILILGLDGAGKTTILYRLQVGEVVT-TIPTIGFNVETVTYKNLKFQVWDLGGLTSIRPYWRCYYSNTDAVIYVVD 81 (169)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHSSCCC-CCCCSSEEEEEEEETTEEEEEEEECCCGGGGGGGGGGCTTCSEEEEEEE
T ss_pred CcceEEEEECCCCCCHHHHHHHHhCCCCcc-eecccceeeeeeccCceEEEEeeccccccccccchhhhhhhhhhhhhhh
Confidence 356899999999999999999999887764 4467777777788899999999999999998888888999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccCHHHHHHHhCcccccCCceeEEEeeecCCCChHHHHHHH
Q 030429 90 AADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCKDSINIDAVIDWL 169 (177)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l 169 (177)
..+..++.....++............|+++++||.|+.+.....++...+.........+++++|||++|.||+++|++|
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iv~nk~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~SA~~g~gv~e~~~~l 161 (169)
T d1upta_ 82 SCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMTSSEMANSLGLPALKDRKWQIFKTSATKGTGLDEAMEWL 161 (169)
T ss_dssp TTCCTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTGGGCTTSCEEEEECCTTTCTTHHHHHHHH
T ss_pred hhhcchhhhccchhhhhhhhhccccceEEEEEeeccccccccHHHHHHHHHHHHHhcCCCEEEEEeCCCCCCHHHHHHHH
Confidence 99999999998888887777666778999999999999887777888777766666778899999999999999999999
Q ss_pred HHHhhhcC
Q 030429 170 IKHSKTAK 177 (177)
Q Consensus 170 ~~~~~~~~ 177 (177)
.+.+++++
T Consensus 162 ~~~l~~k~ 169 (169)
T d1upta_ 162 VETLKSRQ 169 (169)
T ss_dssp HHHHHTCC
T ss_pred HHHHHhCC
Confidence 99998764
|
| >d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab9a species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.97 E-value=5.4e-31 Score=176.02 Aligned_cols=159 Identities=25% Similarity=0.411 Sum_probs=122.7
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEE--EEeC--CEEEEEEecCCchhhHHhHHHHhcCCCEEEEE
Q 030429 12 EMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRK--VTKG--NVTIKLWDLGGQRRFRTMWERYCRGVSAILYV 87 (177)
Q Consensus 12 ~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~--~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v 87 (177)
-+||+++|++|||||||++++.++.+...+.+|.+..... ...+ .+.+.+||++|+.........++..+++++++
T Consensus 6 ~~KI~vvG~~~vGKSSli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~~ 85 (174)
T d1wmsa_ 6 LFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDCCLLT 85 (174)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSCCCC----CCSEEEEEEEEEETTEEEEEEEEECCCCGGGHHHHGGGGTTCSEEEEE
T ss_pred eEEEEEECCCCCCHHHHHHHHHhCCCCCccccceeeeeeeeeeeecCceeeEeeecccCcceehhhhhhhhhccceEEEE
Confidence 4699999999999999999999999888888877755443 2233 47788999999999998889999999999999
Q ss_pred EeCCCCCCHHHHHHHHHHHHc---CCCCCCCcEEEEeeCCCccccc-CHHHHHHHhCcccccCCceeEEEeeecCCCChH
Q 030429 88 VDAADRDSVPIARSELHELLM---KPSLSGIPLLVLGNKIDKSEAL-SKQALVDQLGLESITDREVCCYMISCKDSINID 163 (177)
Q Consensus 88 ~d~~~~~~~~~~~~~~~~~~~---~~~~~~~~~iiv~nK~D~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 163 (177)
+|.+++.++..+..|+..+.. .......|+++|+||+|+.+.. ..++..+... .....++++|||++|.||+
T Consensus 86 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~piilVgnK~Dl~~~~v~~~~~~~~~~----~~~~~~~~e~Sak~~~gI~ 161 (174)
T d1wmsa_ 86 FSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDISERQVSTEEAQAWCR----DNGDYPYFETSAKDATNVA 161 (174)
T ss_dssp EETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCSSCSSCHHHHHHHHH----HTTCCCEEECCTTTCTTHH
T ss_pred EeeecccccchhhhHHHHHHHHhccccCCCceEEEeccccchhhccCcHHHHHHHHH----HcCCCeEEEEcCCCCcCHH
Confidence 999999999999888866543 3334568999999999986632 2223222211 1123479999999999999
Q ss_pred HHHHHHHHHhh
Q 030429 164 AVIDWLIKHSK 174 (177)
Q Consensus 164 ~l~~~l~~~~~ 174 (177)
++|++|++.+.
T Consensus 162 e~f~~l~~~il 172 (174)
T d1wmsa_ 162 AAFEEAVRRVL 172 (174)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 99999998775
|
| >d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Centaurin gamma 1, G domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.97 E-value=2.4e-31 Score=177.74 Aligned_cols=155 Identities=17% Similarity=0.234 Sum_probs=114.7
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEeC--CEEEEEEecCCchhhHHhHHHHhcCCCEEEEEEe
Q 030429 12 EMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTKG--NVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVD 89 (177)
Q Consensus 12 ~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d 89 (177)
.+||+++|++|||||||+++++++.+......+.......+..+ .+.+.+||++|+..+. +++.+|++++|||
T Consensus 5 ~~ki~vlG~~~vGKTsLi~~~~~~~f~~~~~t~~~~~~~~i~v~~~~~~l~i~Dt~g~~~~~-----~~~~ad~~ilVfd 79 (175)
T d2bmja1 5 ELRLGVLGDARSGKSSLIHRFLTGSYQVLEKTESEQYKKEMLVDGQTHLVLIREEAGAPDAK-----FSGWADAVIFVFS 79 (175)
T ss_dssp EEEEEEECCTTTTHHHHHHHHHHSCCCCCCCSSCEEEEEEEEETTEEEEEEEEECSSCCCHH-----HHHHCSEEEEEEE
T ss_pred cEEEEEECCCCCCHHHHHHHHHhCCCCCcCCccceeEEEEeecCceEEEEEEeecccccccc-----cccccceeEEEee
Confidence 69999999999999999999999888654433322222234444 4789999999987654 5777999999999
Q ss_pred CCCCCCHHHHHHHHHHHHc--CCCCCCCcEEEEeeCCCcccccC----HHHHHHHhCcccccCCceeEEEeeecCCCChH
Q 030429 90 AADRDSVPIARSELHELLM--KPSLSGIPLLVLGNKIDKSEALS----KQALVDQLGLESITDREVCCYMISCKDSINID 163 (177)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~iiv~nK~D~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 163 (177)
++++.+|+.+..|+..+.. .......|+++|+||.|+..... .++..+ + .....+++|++|||++|.|++
T Consensus 80 ~~~~~Sf~~~~~~~~~i~~~~~~~~~~~pi~lV~~k~d~d~~~~~~v~~~~~~~-~---~~~~~~~~~~e~SAk~~~~v~ 155 (175)
T d2bmja1 80 LEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPRVVGDARARA-L---CADMKRCSYYETCATYGLNVD 155 (175)
T ss_dssp TTCHHHHHHHHHHHHHHHHHCC--CCCCEEEEEEECTTCCSSSCCCSCHHHHHH-H---HHTSTTEEEEEEBTTTTBTHH
T ss_pred cccchhhhhhHHHHHHHHHHhhcccCCccEEEEeeecCcchhhhcchhHHHHHH-H---HHHhCCCeEEEeCCCCCcCHH
Confidence 9999999999888877643 23335689999999998754322 122211 1 111234589999999999999
Q ss_pred HHHHHHHHHhhh
Q 030429 164 AVIDWLIKHSKT 175 (177)
Q Consensus 164 ~l~~~l~~~~~~ 175 (177)
++|..+++.+.+
T Consensus 156 ~~F~~l~~~i~~ 167 (175)
T d2bmja1 156 RVFQEVAQKVVT 167 (175)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999987754
|
| >d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-33b species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.97 E-value=1e-31 Score=178.03 Aligned_cols=154 Identities=26% Similarity=0.437 Sum_probs=121.4
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEE----EEeCCEEEEEEecCCchhhHH-hHHHHhcCCCEEE
Q 030429 11 QEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRK----VTKGNVTIKLWDLGGQRRFRT-MWERYCRGVSAIL 85 (177)
Q Consensus 11 ~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~----~~~~~~~~~~~D~~g~~~~~~-~~~~~~~~~d~~i 85 (177)
+.+||+++|++|||||||++++.++.+.....++.+..... .......+.+||++|...+.. .++.++.++|+++
T Consensus 1 r~~Kv~liG~~~vGKTsLl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i 80 (165)
T d1z06a1 1 RIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQHYYRNVHAVV 80 (165)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCSHHHHTTTHHHHHTTCCEEE
T ss_pred CEEEEEEECCCCcCHHHHHHHHHhCCCCCccCcccccccceeeeeeeccceEEEEEeccCchhhccccceeeecCCCceE
Confidence 35899999999999999999999999888888777644433 234457899999999877764 4677899999999
Q ss_pred EEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccc--CHHHHHHHhCcccccCCceeEEEeeecC---CC
Q 030429 86 YVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEAL--SKQALVDQLGLESITDREVCCYMISCKD---SI 160 (177)
Q Consensus 86 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~---~~ 160 (177)
+|+|++++++++.+..|+..+.......+.|+++|+||+|+.+.. ..++..+... ..++++++|||++ +.
T Consensus 81 lv~d~~~~~s~~~~~~~~~~i~~~~~~~~~pi~lvgnK~Dl~~~~~v~~~~~~~~~~-----~~~~~~~e~SAkt~~~~~ 155 (165)
T d1z06a1 81 FVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRSAIQVPTDLAQKFAD-----THSMPLFETSAKNPNDND 155 (165)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHCCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHH-----HTTCCEEECCSSSGGGGS
T ss_pred EEEEeehhhhhhhhhhhhHHHHhhccCCCCeEEEEeccccchhccchhHHHHHHHHH-----HCCCEEEEEecccCCcCc
Confidence 999999999999999999998776666789999999999986642 2222222111 1123699999986 56
Q ss_pred ChHHHHHHH
Q 030429 161 NIDAVIDWL 169 (177)
Q Consensus 161 ~i~~l~~~l 169 (177)
||+++|++|
T Consensus 156 ~V~e~F~~l 164 (165)
T d1z06a1 156 HVEAIFMTL 164 (165)
T ss_dssp CHHHHHHHH
T ss_pred CHHHHHHHh
Confidence 999999887
|
| >d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.96 E-value=8.8e-29 Score=163.19 Aligned_cols=157 Identities=33% Similarity=0.555 Sum_probs=135.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEeCCEEEEEEecCCchhhHHhHHHHhcCCCEEEEEEeCCCC
Q 030429 14 ELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAADR 93 (177)
Q Consensus 14 ~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~ 93 (177)
||+++|++|||||||++++.++.+. ...++.+.........+....+||+++...+......+...++++++++|.++.
T Consensus 2 KI~liG~~nvGKSSLln~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 80 (166)
T d2qtvb1 2 KLLFLGLDNAGKTTLLHMLKNDRLA-TLQPTWHPTSEELAIGNIKFTTFDLGGHIQARRLWKDYFPEVNGIVFLVDAADP 80 (166)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSCCC-CCCCCCSCEEEEECCTTCCEEEEECCCSGGGGGGGGGGCTTCSEEEEEEETTCG
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCC-eeeceeeEeEEEeccCCeeEEEEeeccchhhhhhHhhhhhheeeeeeeccccch
Confidence 7999999999999999999988765 456788888888888899999999999999988889999999999999999999
Q ss_pred CCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccCHHHHHHHhCcccc-------cCCceeEEEeeecCCCChHHHH
Q 030429 94 DSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESI-------TDREVCCYMISCKDSINIDAVI 166 (177)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~Sa~~~~~i~~l~ 166 (177)
.++.....++..........+.|+++++||.|+.......+..+.+..... ..+.+.+++|||++|+|++|+|
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~i~i~~~k~d~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~SA~tg~Gv~e~~ 160 (166)
T d2qtvb1 81 ERFDEARVELDALFNIAELKDVPFVILGNKIDAPNAVSEAELRSALGLLNTTGSQRIEGQRPVEVFMCSVVMRNGYLEAF 160 (166)
T ss_dssp GGHHHHHHHHHHHHTCTTTTTCCEEEEEECTTSSSCCCHHHHHHHHTCSSCCC---CCSSCCEEEEEEBTTTTBSHHHHH
T ss_pred hhhhhhhHHHHhhhhhhccCCceEEEEeccccccccCCHHHHHHHhhhhhhhHHHhhcccCCCEEEEeeCCCCCCHHHHH
Confidence 999999988888888777788999999999999876666666666543222 2346789999999999999999
Q ss_pred HHHHH
Q 030429 167 DWLIK 171 (177)
Q Consensus 167 ~~l~~ 171 (177)
++|.+
T Consensus 161 ~~l~~ 165 (166)
T d2qtvb1 161 QWLSQ 165 (166)
T ss_dssp HHHTT
T ss_pred HHHhC
Confidence 99975
|
| >d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=99.96 E-value=5.9e-28 Score=162.18 Aligned_cols=165 Identities=28% Similarity=0.575 Sum_probs=130.5
Q ss_pred cccceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEeCCEEEEEEecCCchhhHHhHHHHhcCCCEEEEE
Q 030429 8 FFKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYV 87 (177)
Q Consensus 8 ~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v 87 (177)
..++..||+++|++|||||||+++|.++.+.. ..++.+.....+..++..+..||++++..+...+..+....++++++
T Consensus 9 ~~~k~~kI~lvG~~~vGKTsLl~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (186)
T d1f6ba_ 9 LYKKTGKLVFLGLDNAGKTTLLHMLKDDRLGQ-HVPTLHPTSEELTIAGMTFTTFDLGGHIQARRVWKNYLPAINGIVFL 87 (186)
T ss_dssp CTTCCEEEEEEEETTSSHHHHHHHHSCC-------CCCCCSCEEEEETTEEEEEEEECC----CCGGGGGGGGCSEEEEE
T ss_pred ccCCCCEEEEECCCCCCHHHHHHHHhCCCCcc-eecccccceeEEEecccccccccccchhhhhhHHhhhhcccceeeee
Confidence 45788999999999999999999999776653 34666777777888899999999999988888888889999999999
Q ss_pred EeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccCHHHHHHHhCccc------------ccCCceeEEEee
Q 030429 88 VDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLES------------ITDREVCCYMIS 155 (177)
Q Consensus 88 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~S 155 (177)
+|.++...+......+..........+.|+++++||.|+.......++.+.+.... ....++.+++||
T Consensus 88 ~d~~d~~~~~~~~~~~~~~~~~~~~~~~~~li~~~K~D~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 167 (186)
T d1f6ba_ 88 VDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPEAISEERLREMFGLYGQTTGKGSVSLKELNARPLEVFMCS 167 (186)
T ss_dssp EETTCGGGHHHHHHHHHHHHTCGGGTTSCEEEEEECTTSTTCCCHHHHHHHHTCTTTCCCSSCCCTTTCCSCCEEEEECB
T ss_pred eeccCccchHHHHHHHHHhhcccccCCCceEEEEeccCccccCCHHHHHHHHhhcccchhhhhhhHHHhhcCCCEEEEEe
Confidence 99999999998888777777766667899999999999987766666666554321 123356899999
Q ss_pred ecCCCChHHHHHHHHHHh
Q 030429 156 CKDSINIDAVIDWLIKHS 173 (177)
Q Consensus 156 a~~~~~i~~l~~~l~~~~ 173 (177)
|++|+|++|+|++|.+.+
T Consensus 168 A~tg~Gi~e~~~~l~~~i 185 (186)
T d1f6ba_ 168 VLKRQGYGEGFRWMAQYI 185 (186)
T ss_dssp TTTTBSHHHHHHHHHTTC
T ss_pred CCCCCCHHHHHHHHHHhh
Confidence 999999999999999765
|
| >d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.95 E-value=2.6e-28 Score=165.96 Aligned_cols=163 Identities=21% Similarity=0.310 Sum_probs=130.1
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEeCCEEEEEEecCCchhhHHhHHHHhcCCCEEEEEEeC
Q 030429 11 QEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDA 90 (177)
Q Consensus 11 ~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~ 90 (177)
+.+||+++|..|||||||+++|..+.+. +.||.+.....+....+.+++||++|++.+...+..++.+++++++++|.
T Consensus 1 ke~Kiv~lG~~~vGKTsll~r~~~~~~~--~~pTiG~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~~~~~ 78 (200)
T d2bcjq2 1 RELKLLLLGTGESGKSTFIKQMRIIHGS--GVPTTGIIEYPFDLQSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVAL 78 (200)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHHTSS--CCCCCSCEEEEEECSSCEEEEEECCCSTTGGGGGGGGCSSCSEEEEEEEG
T ss_pred CeeEEEEECCCCCCHHHHHHHHhCCCCC--CCceeeEEEEEEeccceeeeeccccccccccccccccccccceeeEeeec
Confidence 4689999999999999999999987764 56899999999999999999999999999999999999999999999999
Q ss_pred CCCCC----------HHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccC------------------HHHHH-----H
Q 030429 91 ADRDS----------VPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALS------------------KQALV-----D 137 (177)
Q Consensus 91 ~~~~~----------~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~------------------~~~~~-----~ 137 (177)
++..+ +.+....|..++......+.|+++++||+|+.+... ..... .
T Consensus 79 ~~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~~~v~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 158 (200)
T d2bcjq2 79 SEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKM 158 (200)
T ss_dssp GGGGCBCSSCTTSBHHHHHHHHHHHHHHCGGGSSSEEEEEEECHHHHHHHTTTSCHHHHSTTCCSCSSCHHHHHHHHHHH
T ss_pred cchhhhhhhhccccchHHHHHHHHHHHhhhhccCccEEEecchhhhhhhcccchHHHHhcccccCCchhHHHHHHHHHHH
Confidence 87543 445566666666665557899999999999754211 11111 1
Q ss_pred HhCcccccCCceeEEEeeecCCCChHHHHHHHHHHhhh
Q 030429 138 QLGLESITDREVCCYMISCKDSINIDAVIDWLIKHSKT 175 (177)
Q Consensus 138 ~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~ 175 (177)
.........+.+.+++|||++|.||+++|+.|.+.+.+
T Consensus 159 f~~~~~~~~~~~~~~~tSAk~~~ni~~vF~~i~~~I~~ 196 (200)
T d2bcjq2 159 FVDLNPDSDKIIYSHFTCATDTENIRFVFAAVKDTILQ 196 (200)
T ss_dssp HHTTCSCTTSCEEEEECCTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHhcccCCCceEEEEeEEEcCHhHHHHHHHHHHHHHH
Confidence 12222233456778899999999999999999988765
|
| >d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Thermus thermophilus [TaxId: 274]
Probab=99.95 E-value=5.7e-27 Score=156.85 Aligned_cols=156 Identities=19% Similarity=0.179 Sum_probs=109.9
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCC---CCCCCccceeEEEEEeCCEEEEEEecCCchh--------hHHhHHHHhcC
Q 030429 12 EMELSLIGLQNAGKTSLVNTIATGGYS---EDMIPTVGFNMRKVTKGNVTIKLWDLGGQRR--------FRTMWERYCRG 80 (177)
Q Consensus 12 ~~~i~i~G~~~~GKSsli~~l~~~~~~---~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~--------~~~~~~~~~~~ 80 (177)
.-.|+++|.+|||||||+|+|++.... .....|...........+..+.+|||||... +......++..
T Consensus 5 ~~~I~lvG~~~~GKSSLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~~~~~~~~~ 84 (178)
T d1wf3a1 5 SGFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEGRRQIVFVDTPGLHKPMDALGEFMDQEVYEALAD 84 (178)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETTEEEEEEECCCCCCCCSHHHHHHHHHHHHHTSS
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCceeecccCCcccccccceeeeeeeeeeecccccccccccccchhccccccccccc
Confidence 347999999999999999999976532 2233344555556678889999999999532 23333456789
Q ss_pred CCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccCHHHHHHHhCcccccCCceeEEEeeecCCC
Q 030429 81 VSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCKDSI 160 (177)
Q Consensus 81 ~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 160 (177)
+|++++|+|++++... ...++...+... ..+.|+++|+||+|+.+.. ++..+.+... .....++++||++|.
T Consensus 85 ad~il~v~D~~~~~~~--~~~~i~~~l~~~-~~~~piilv~NK~Dl~~~~--~~~~~~~~~~---~~~~~~~~iSA~~~~ 156 (178)
T d1wf3a1 85 VNAVVWVVDLRHPPTP--EDELVARALKPL-VGKVPILLVGNKLDAAKYP--EEAMKAYHEL---LPEAEPRMLSALDER 156 (178)
T ss_dssp CSEEEEEEETTSCCCH--HHHHHHHHHGGG-TTTSCEEEEEECGGGCSSH--HHHHHHHHHT---STTSEEEECCTTCHH
T ss_pred ccceeeeechhhhhcc--cccchhhheecc-ccchhhhhhhcccccccCH--HHHHHHHHhh---cccCceEEEecCCCC
Confidence 9999999999876443 334444444432 2468999999999997642 2222222111 122368899999999
Q ss_pred ChHHHHHHHHHHhhh
Q 030429 161 NIDAVIDWLIKHSKT 175 (177)
Q Consensus 161 ~i~~l~~~l~~~~~~ 175 (177)
|+++|+++|.+.+.+
T Consensus 157 gi~~L~~~i~~~lpe 171 (178)
T d1wf3a1 157 QVAELKADLLALMPE 171 (178)
T ss_dssp HHHHHHHHHHTTCCB
T ss_pred CHHHHHHHHHHhCCC
Confidence 999999999988754
|
| >d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.95 E-value=1.6e-28 Score=166.37 Aligned_cols=161 Identities=22% Similarity=0.318 Sum_probs=125.0
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEeCCEEEEEEecCCchhhHHhHHHHhcCCCEEEEEEeC
Q 030429 11 QEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDA 90 (177)
Q Consensus 11 ~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~ 90 (177)
+.+||+++|..|||||||+++|..+.+ ++.+.....++.....+++||++|++.+...+..+++.++++++|+|.
T Consensus 1 ~e~KivllG~~~vGKTsl~~r~~~~~~-----~t~~~~~~~~~~~~~~~~i~D~~Gq~~~~~~~~~~~~~~~~~i~v~d~ 75 (195)
T d1svsa1 1 REVKLLLLGAGESGKSTIVKQMKIIHE-----AGTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVAL 75 (195)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHHHS-----CCCSEEEEEEEETTEEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEEG
T ss_pred CceEEEEECCCCCCHHHHHHHHhhCCC-----CCccEEEEEEEeeeeeeeeeccccccccccchhhcccCCceeeeEEee
Confidence 468999999999999999999986544 455677778889999999999999999999999999999999999999
Q ss_pred CCCCCH----------HHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccc-----------------cCHHHHHH----H-
Q 030429 91 ADRDSV----------PIARSELHELLMKPSLSGIPLLVLGNKIDKSEA-----------------LSKQALVD----Q- 138 (177)
Q Consensus 91 ~~~~~~----------~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~-----------------~~~~~~~~----~- 138 (177)
++.+++ .+...++..++........|+++++||+|+... ....+... .
T Consensus 76 ~~~~~~~~~~~~~~~~~e~~~~~~~i~~~~~~~~~~~~lv~Nk~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f 155 (195)
T d1svsa1 76 SDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQF 155 (195)
T ss_dssp GGGGCBCSSCTTSBHHHHHHHHHHHHHTCGGGTTSEEEEEEECHHHHHHHTTTSCGGGTCTTCCSCSSHHHHHHHHHHHH
T ss_pred cccchHHHHhhhhHHHHHHHHHHHHHhcccccCCCCEEEEeccchhhhhhccchHHHHHhhhhcCcccHHHHHHHHHHHH
Confidence 887655 344556666666656677899999999996431 11111111 1
Q ss_pred hCc-ccccCCceeEEEeeecCCCChHHHHHHHHHHhhhc
Q 030429 139 LGL-ESITDREVCCYMISCKDSINIDAVIDWLIKHSKTA 176 (177)
Q Consensus 139 ~~~-~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~ 176 (177)
... .....+.+.+++|||+++.||+++|+.+.+.+.++
T Consensus 156 ~~~~~~~~~~~~~~~~tSA~~~~nv~~~F~~v~~~il~~ 194 (195)
T d1svsa1 156 EDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVIIKN 194 (195)
T ss_dssp HTTCSCTTTCCEEEEECCTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHhcccCCCcceeEEEEeECCHhHHHHHHHHHHHHHhc
Confidence 111 11223567788999999999999999999987654
|
| >d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable tRNA modification GTPase TrmE (MnmE), G domain species: Escherichia coli [TaxId: 562]
Probab=99.95 E-value=6.2e-27 Score=154.13 Aligned_cols=150 Identities=19% Similarity=0.187 Sum_probs=109.7
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCCC---CCCCccceeEEEEEeCCEEEEEEecCCchhh--------HHhHHHHhcC
Q 030429 12 EMELSLIGLQNAGKTSLVNTIATGGYSE---DMIPTVGFNMRKVTKGNVTIKLWDLGGQRRF--------RTMWERYCRG 80 (177)
Q Consensus 12 ~~~i~i~G~~~~GKSsli~~l~~~~~~~---~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~--------~~~~~~~~~~ 80 (177)
.+||+++|++|||||||+|+|++..... ....+.......+...+..+.+||+||.... ......++..
T Consensus 1 ~~kI~lvG~~nvGKSsLin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~~~ 80 (161)
T d2gj8a1 1 GMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWQEIEQ 80 (161)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEETTEEEEEEECCCCSCCSSHHHHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCceEeecccccccceEeeeeeccCceeeeccccccccccccchhHHHHHHHHHHHh
Confidence 3799999999999999999999765432 2223333445567788999999999994322 1223345788
Q ss_pred CCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccCHHHHHHHhCcccccCCceeEEEeeecCCC
Q 030429 81 VSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCKDSI 160 (177)
Q Consensus 81 ~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 160 (177)
+|++++++|.++..+......+...+.... ...|+++|+||+|+.+... ........+++++||++|.
T Consensus 81 ~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~--~~~~iilv~NK~Dl~~~~~----------~~~~~~~~~~~~iSAk~~~ 148 (161)
T d2gj8a1 81 ADRVLFMVDGTTTDAVDPAEIWPEFIARLP--AKLPITVVRNKADITGETL----------GMSEVNGHALIRLSARTGE 148 (161)
T ss_dssp CSEEEEEEETTTCCCCSHHHHCHHHHHHSC--TTCCEEEEEECHHHHCCCC----------EEEEETTEEEEECCTTTCT
T ss_pred ccccceeeccccccchhhhhhhhhhhhhcc--cccceeeccchhhhhhhHH----------HHHHhCCCcEEEEECCCCC
Confidence 999999999998887776665544443332 3689999999999865421 1112245689999999999
Q ss_pred ChHHHHHHHHHHh
Q 030429 161 NIDAVIDWLIKHS 173 (177)
Q Consensus 161 ~i~~l~~~l~~~~ 173 (177)
|+++|+++|.+.+
T Consensus 149 gi~~L~~~l~~~l 161 (161)
T d2gj8a1 149 GVDVLRNHLKQSM 161 (161)
T ss_dssp THHHHHHHHHHHC
T ss_pred CHHHHHHHHHhhC
Confidence 9999999998764
|
| >d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor SelB, N-terminal domain species: Methanococcus maripaludis [TaxId: 39152]
Probab=99.95 E-value=4.5e-27 Score=157.46 Aligned_cols=161 Identities=18% Similarity=0.203 Sum_probs=113.4
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCC---------CccceeEEEEEeCCEEEEEEecCCchhhHHhHHHHhcCC
Q 030429 11 QEMELSLIGLQNAGKTSLVNTIATGGYSEDMI---------PTVGFNMRKVTKGNVTIKLWDLGGQRRFRTMWERYCRGV 81 (177)
Q Consensus 11 ~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~---------~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~ 81 (177)
+.++|+++|.+++|||||+|+|++........ .+.......+...+..+.++|+||+..+.......+..+
T Consensus 4 k~inIaiiG~~naGKSTL~n~L~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~l~~~ 83 (179)
T d1wb1a4 4 KNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLENYRITLVDAPGHADLIRAVVSAADII 83 (179)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEETTEEEEECCCSSHHHHHHHHHHHTTSC
T ss_pred CCEEEEEEeCCCCcHHHHHHHHHHhcCceecccccceeeeeeeccccccccccCCccccccccccccccccchhhhhhhc
Confidence 56899999999999999999998543221111 122233333556788999999999999998888899999
Q ss_pred CEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccCHH---HHHHHhCcccccCCceeEEEeeecC
Q 030429 82 SAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQ---ALVDQLGLESITDREVCCYMISCKD 158 (177)
Q Consensus 82 d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~Sa~~ 158 (177)
|++++|+|+++...... ...+..+.. .++|+++|+||+|+.+.+... +..+.+..........+++++||++
T Consensus 84 d~~ilv~d~~~g~~~~~-~~~~~~~~~----~~~p~iiv~NKiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~iSA~~ 158 (179)
T d1wb1a4 84 DLALIVVDAKEGPKTQT-GEHMLILDH----FNIPIIVVITKSDNAGTEEIKRTEMIMKSILQSTHNLKNSSIIPISAKT 158 (179)
T ss_dssp CEEEEEEETTTCSCHHH-HHHHHHHHH----TTCCBCEEEECTTSSCHHHHHHHHHHHHHHHHHSSSGGGCCEEECCTTT
T ss_pred cccccccccccccchhh-hhhhhhhhh----cCCcceeccccccccCHHHHHHHHHHHHHHHHHhhcCCCCeEEEEEccC
Confidence 99999999987643322 223333322 368999999999998764322 2222222222233456899999999
Q ss_pred CCChHHHHHHHHHHhhhc
Q 030429 159 SINIDAVIDWLIKHSKTA 176 (177)
Q Consensus 159 ~~~i~~l~~~l~~~~~~~ 176 (177)
|.|+++|++.|.+.+.+.
T Consensus 159 g~gi~eL~~~I~~~l~~~ 176 (179)
T d1wb1a4 159 GFGVDELKNLIITTLNNA 176 (179)
T ss_dssp CTTHHHHHHHHHHHHHHS
T ss_pred CcCHHHHHHHHHhcCCcc
Confidence 999999999999988764
|
| >d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.94 E-value=9.9e-28 Score=163.19 Aligned_cols=162 Identities=20% Similarity=0.287 Sum_probs=121.4
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEeCCEEEEEEecCCchhhHHhHHHHhcCCCEEEEEEeC
Q 030429 11 QEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDA 90 (177)
Q Consensus 11 ~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~ 90 (177)
+.+||+++|.+|||||||++++. +...+.+|.|.....+..+...+.+||++|++.+...+..+++.++++++++|.
T Consensus 1 r~iKivllG~~~vGKTsll~r~~---f~~~~~pTiG~~~~~~~~~~~~~~~~D~~gq~~~~~~~~~~~~~~~~~~~~~~~ 77 (200)
T d1zcba2 1 RLVKILLLGAGESGKSTFLKQMR---IIHGQDPTKGIHEYDFEIKNVPFKMVDVGGQRSERKRWFECFDSVTSILFLVSS 77 (200)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHH---HHHSCCCCSSEEEEEEEETTEEEEEEEECC-------CTTSCTTCCEEEEEEET
T ss_pred CeEEEEEECCCCCCHHHHHHHHh---cCCCCCCeeeeEEEEEeeeeeeeeeecccceeeecccccccccccceeEEEEEc
Confidence 35899999999999999999994 556677899999999999999999999999999999999999999999999999
Q ss_pred CCCCC----------HHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccc------------------cCHHHHHHHhCc-
Q 030429 91 ADRDS----------VPIARSELHELLMKPSLSGIPLLVLGNKIDKSEA------------------LSKQALVDQLGL- 141 (177)
Q Consensus 91 ~~~~~----------~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~------------------~~~~~~~~~~~~- 141 (177)
++... +.....++..++......+.|+++++||+|+.+. ...+...+....
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~ 157 (200)
T d1zcba2 78 SEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVSIILFLNKTDLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFLVEC 157 (200)
T ss_dssp TCTTCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEEEEEECHHHHHHHTTTCCGGGTCTTCCSCTTCHHHHHHHHHHH
T ss_pred CCcceeeeecccchhhhHHHHHHHHHhhChhhcCceEEEEeccchhhhhhccccHHHHhCccccCCcchHHHHHHHHHHH
Confidence 88654 4566777778777766678999999999997542 111222221111
Q ss_pred -----ccccCCceeEEEeeecCCCChHHHHHHHHHHhhh
Q 030429 142 -----ESITDREVCCYMISCKDSINIDAVIDWLIKHSKT 175 (177)
Q Consensus 142 -----~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~ 175 (177)
.....+.+.+++|||+++.||+++|+.+.+.+.+
T Consensus 158 f~~~~~~~~~~~iy~~~TsA~d~~ni~~vf~~v~d~i~~ 196 (200)
T d1zcba2 158 FRGKRRDQQQRPLYHHFTTAINTENIRLVFRDVKDTILH 196 (200)
T ss_dssp HHTTCSSCC--CCEEEECCTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHhccCCCCCceEEEEeeeeCcHHHHHHHHHHHHHHHH
Confidence 1112344567789999999999999999887654
|
| >d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: TrmE GTPase domain species: Thermotoga maritima [TaxId: 2336]
Probab=99.94 E-value=3.7e-26 Score=150.25 Aligned_cols=147 Identities=17% Similarity=0.247 Sum_probs=110.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCC---CCCCCCccceeEEEEEeCCEEEEEEecCCch--------hh-HHhHHHHhcC
Q 030429 13 MELSLIGLQNAGKTSLVNTIATGGY---SEDMIPTVGFNMRKVTKGNVTIKLWDLGGQR--------RF-RTMWERYCRG 80 (177)
Q Consensus 13 ~~i~i~G~~~~GKSsli~~l~~~~~---~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~--------~~-~~~~~~~~~~ 80 (177)
+||+++|.+|||||||+|+|++... ......+.......+..++..+.+|||||.. .. .......+..
T Consensus 1 ikI~liG~~n~GKSSLin~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~~~~~~ 80 (160)
T d1xzpa2 1 LRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRGILFRIVDTAGVRSETNDLVERLGIERTLQEIEK 80 (160)
T ss_dssp EEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEETTEEEEEEESSCCCSSCCTTCCCCCHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceeeeccccccccceeEEEEeCCeeEEeccccccccCCccHHHHHHHHHHHHHHHh
Confidence 6899999999999999999987552 2223345555666678899999999999931 11 1222334677
Q ss_pred CCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccCHHHHHHHhCcccccCCceeEEEeeecCCC
Q 030429 81 VSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCKDSI 160 (177)
Q Consensus 81 ~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 160 (177)
+|++++|+|++++.......-+ ..+ ...++++++||+|+.+....++..+.+... .+++++||++|.
T Consensus 81 ad~ii~v~d~~~~~~~~~~~~~-~~~------~~~~~i~~~~k~d~~~~~~~~~~~~~~~~~------~~~~~vSA~~g~ 147 (160)
T d1xzpa2 81 ADIVLFVLDASSPLDEEDRKIL-ERI------KNKRYLVVINKVDVVEKINEEEIKNKLGTD------RHMVKISALKGE 147 (160)
T ss_dssp CSEEEEEEETTSCCCHHHHHHH-HHH------TTSSEEEEEEECSSCCCCCHHHHHHHHTCS------TTEEEEEGGGTC
T ss_pred CCEEEEEEeCCCCcchhhhhhh-hhc------ccccceeeeeeccccchhhhHHHHHHhCCC------CcEEEEECCCCC
Confidence 9999999999988765543322 111 357899999999999888877777776532 368999999999
Q ss_pred ChHHHHHHHHHH
Q 030429 161 NIDAVIDWLIKH 172 (177)
Q Consensus 161 ~i~~l~~~l~~~ 172 (177)
|+++|+++|.+.
T Consensus 148 gi~~L~~~I~ke 159 (160)
T d1xzpa2 148 GLEKLEESIYRE 159 (160)
T ss_dssp CHHHHHHHHHHH
T ss_pred CHHHHHHHHHhc
Confidence 999999998763
|
| >d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=99.94 E-value=9.3e-26 Score=149.93 Aligned_cols=153 Identities=20% Similarity=0.208 Sum_probs=103.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCC---CCCCCccceeEEEEEeCCEEEEEEecCCc---------hhhHHhHHHHhcCC
Q 030429 14 ELSLIGLQNAGKTSLVNTIATGGYS---EDMIPTVGFNMRKVTKGNVTIKLWDLGGQ---------RRFRTMWERYCRGV 81 (177)
Q Consensus 14 ~i~i~G~~~~GKSsli~~l~~~~~~---~~~~~t~~~~~~~~~~~~~~~~~~D~~g~---------~~~~~~~~~~~~~~ 81 (177)
.|+++|++|||||||+++|++.... .....|.......+......+.+||++|. .........++..+
T Consensus 2 ~V~liG~~n~GKSsLi~~L~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~a 81 (171)
T d1mkya1 2 TVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYGKTFKLVDTCGVFDNPQDIISQKMKEVTLNMIREA 81 (171)
T ss_dssp EEEEECCTTSSHHHHHHHHHC--------------CCSEEEEEETTEEEEEEECTTTTSSGGGCCCHHHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCcceecccCceeeccccccccccccccccccccceeeeeccccccccccccccccccC
Confidence 6999999999999999999965532 22334555566667888999999999993 12233344567889
Q ss_pred CEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccCHHHHHHHhCcccccCCceeEEEeeecCCCC
Q 030429 82 SAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCKDSIN 161 (177)
Q Consensus 82 d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 161 (177)
|+++++.|.+....... ..++..+.. .++|+++|+||+|+.+....+...+.... ....++++||++|.|
T Consensus 82 d~i~~~~~~~~~~~~~~-~~~~~~l~~----~~~pviiv~NK~Dl~~~~~~~~~~~~~~~-----~~~~~i~iSAk~g~g 151 (171)
T d1mkya1 82 DLVLFVVDGKRGITKED-ESLADFLRK----STVDTILVANKAENLREFEREVKPELYSL-----GFGEPIPVSAEHNIN 151 (171)
T ss_dssp SEEEEEEETTTCCCHHH-HHHHHHHHH----HTCCEEEEEESCCSHHHHHHHTHHHHGGG-----SSCSCEECBTTTTBS
T ss_pred cEEEEeecccccccccc-ccccccccc----ccccccccchhhhhhhhhhhHHHHHHHhc-----CCCCeEEEecCCCCC
Confidence 99999999876554432 333333322 36899999999999764332222222211 223568999999999
Q ss_pred hHHHHHHHHHHhhhc
Q 030429 162 IDAVIDWLIKHSKTA 176 (177)
Q Consensus 162 i~~l~~~l~~~~~~~ 176 (177)
+++|+++|.+.+.++
T Consensus 152 id~L~~~i~~~l~e~ 166 (171)
T d1mkya1 152 LDTMLETIIKKLEEK 166 (171)
T ss_dssp HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCCCC
Confidence 999999999988764
|
| >d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Thermus thermophilus [TaxId: 274]
Probab=99.93 E-value=2.4e-26 Score=153.97 Aligned_cols=157 Identities=25% Similarity=0.267 Sum_probs=105.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCC--CCCccceeEEEE-EeCCEEEEEEecCCchhh-------HHhHHHHhcCCCE
Q 030429 14 ELSLIGLQNAGKTSLVNTIATGGYSED--MIPTVGFNMRKV-TKGNVTIKLWDLGGQRRF-------RTMWERYCRGVSA 83 (177)
Q Consensus 14 ~i~i~G~~~~GKSsli~~l~~~~~~~~--~~~t~~~~~~~~-~~~~~~~~~~D~~g~~~~-------~~~~~~~~~~~d~ 83 (177)
+|+++|.+|||||||+|+|++...... ...+........ ...+..+.+|||||.... .......+..+++
T Consensus 3 ~VaivG~~nvGKSTLin~L~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~~l~~~~~~~~ 82 (180)
T d1udxa2 3 DVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSEEERFTLADIPGIIEGASEGKGLGLEFLRHIARTRV 82 (180)
T ss_dssp SEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEEEEECSSSCEEEEEECCCCCCCGGGSCCSCHHHHHHHTSSSE
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCceeccCCCceeeeeceeeecCCCeEEEcCCCeeecCchHHHHHHHHHHHHHHhhhh
Confidence 599999999999999999986654222 222333333333 345678999999994321 1223345778999
Q ss_pred EEEEEeCCCCCCHHHHHHHHHHHHcC-CCCCCCcEEEEeeCCCcccccCHHHHHHHhCcccccCCceeEEEeeecCCCCh
Q 030429 84 ILYVVDAADRDSVPIARSELHELLMK-PSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCKDSINI 162 (177)
Q Consensus 84 ~i~v~d~~~~~~~~~~~~~~~~~~~~-~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i 162 (177)
+++++|.+... ......+...+... ....++|+++|+||+|+.+.+..++..+.+.. ...+++++||++|.|+
T Consensus 83 ~~~~~d~~~~~-~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~D~~~~~~~~~~~~~~~~-----~~~~~~~iSA~tg~gi 156 (180)
T d1udxa2 83 LLYVLDAADEP-LKTLETLRKEVGAYDPALLRRPSLVALNKVDLLEEEAVKALADALAR-----EGLAVLPVSALTGAGL 156 (180)
T ss_dssp EEEEEETTSCH-HHHHHHHHHHHHHHCHHHHHSCEEEEEECCTTSCHHHHHHHHHHHHT-----TTSCEEECCTTTCTTH
T ss_pred hhhhccccccc-ccchhhhhhhhhccccccchhhhhhhhhhhhhhhHHHHHHHHHHHHh-----cCCeEEEEEcCCCCCH
Confidence 99999986542 23332222222111 11124799999999999887655555555432 3457999999999999
Q ss_pred HHHHHHHHHHhhhc
Q 030429 163 DAVIDWLIKHSKTA 176 (177)
Q Consensus 163 ~~l~~~l~~~~~~~ 176 (177)
++|++.|.+.+...
T Consensus 157 d~L~~~i~~~l~~~ 170 (180)
T d1udxa2 157 PALKEALHALVRST 170 (180)
T ss_dssp HHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHhhc
Confidence 99999999988753
|
| >d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=99.93 E-value=1.2e-25 Score=151.19 Aligned_cols=162 Identities=18% Similarity=0.108 Sum_probs=108.6
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHhcCCC---CCCCCCccceeEEEEEeCCEEEEEEecCCchhhH------------Hh
Q 030429 9 FKQEMELSLIGLQNAGKTSLVNTIATGGY---SEDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRFR------------TM 73 (177)
Q Consensus 9 ~~~~~~i~i~G~~~~GKSsli~~l~~~~~---~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~------------~~ 73 (177)
.++.+||+++|.+|||||||+|+|++... ......+.......+..++..+.++|+||..... ..
T Consensus 5 ~~~~~kV~iiG~~~~GKSTLin~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~ 84 (186)
T d1mkya2 5 ITDAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKYVFVDTAGLRRKSRVEPRTVEKYSNYR 84 (186)
T ss_dssp CCSCEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEEEEESSCSCC-----------CCSCCHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHCCCcceeecccccccccceeeeccCCceeeeeccCCccccccccccccccchhHH
Confidence 34579999999999999999999997653 2223334444455577888999999999954322 23
Q ss_pred HHHHhcCCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccc--CHHHHHHHhCcccccCCceeE
Q 030429 74 WERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEAL--SKQALVDQLGLESITDREVCC 151 (177)
Q Consensus 74 ~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~ 151 (177)
....++.+|++++|+|++.+.. ....++...... .+.|+++|+||+|+.... ...++.+.+..........++
T Consensus 85 ~~~~~~~~dvii~v~d~~~~~~--~~~~~~~~~~~~---~~~~~i~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i 159 (186)
T d1mkya2 85 VVDSIEKADVVVIVLDATQGIT--RQDQRMAGLMER---RGRASVVVFNKWDLVVHREKRYDEFTKLFREKLYFIDYSPL 159 (186)
T ss_dssp HHHHHHHCSEEEEEEETTTCCC--HHHHHHHHHHHH---TTCEEEEEEECGGGSTTGGGCHHHHHHHHHHHCGGGTTSCE
T ss_pred HHHHHhcCCEEEEeecccccch--hhHHHHHHHHHH---cCCceeeeccchhhhcchhhhhhhHHHHHHHHhcccCCCeE
Confidence 3345677999999999976533 222333333232 368999999999986533 234444444333333345689
Q ss_pred EEeeecCCCChHHHHHHHHHHhhh
Q 030429 152 YMISCKDSINIDAVIDWLIKHSKT 175 (177)
Q Consensus 152 ~~~Sa~~~~~i~~l~~~l~~~~~~ 175 (177)
+++||++|.|+++|++.|.+.+..
T Consensus 160 ~~vSa~~g~gv~~L~~~i~~~~~~ 183 (186)
T d1mkya2 160 IFTSADKGWNIDRMIDAMNLAYAS 183 (186)
T ss_dssp EECBTTTTBSHHHHHHHHHHHHHH
T ss_pred EEEeCCCCCCHHHHHHHHHHHHHh
Confidence 999999999999999999887764
|
| >d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein engB species: Pyrococcus horikoshii [TaxId: 53953]
Probab=99.93 E-value=5.5e-25 Score=147.66 Aligned_cols=156 Identities=19% Similarity=0.239 Sum_probs=98.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEeCCEEEEEEecCCch---------------hhHHhHHHHh
Q 030429 14 ELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQR---------------RFRTMWERYC 78 (177)
Q Consensus 14 ~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~---------------~~~~~~~~~~ 78 (177)
.|+++|.+|||||||+|++++........+........+...+ +.+|||||.. .........+
T Consensus 2 ~I~lvG~~nvGKSsLin~l~~~~~~~~~~~g~T~~~~~~~~~~--~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (184)
T d2cxxa1 2 TIIFAGRSNVGKSTLIYRLTGKKVRRGKRPGVTRKIIEIEWKN--HKIIDMPGFGFMMGLPKEVQERIKDEIVHFIEDNA 79 (184)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSCCCSSSSSTTCTTSCEEEEETT--EEEEECCCBSCCTTSCHHHHHHHHHHHHHHHHHHG
T ss_pred EEEEECCCCCCHHHHHHHHhCCCceeeCCCCEeeccccccccc--ceecccCCceeccccccccccccchhhhhhhhhcc
Confidence 6899999999999999999977654332221112233344444 5678999931 1112223446
Q ss_pred cCCCEEEEEEeCCCCCCHHH----------HHHHHHHHHcCCCCCCCcEEEEeeCCCcccccCH--HHHHHHhCcccccC
Q 030429 79 RGVSAILYVVDAADRDSVPI----------ARSELHELLMKPSLSGIPLLVLGNKIDKSEALSK--QALVDQLGLESITD 146 (177)
Q Consensus 79 ~~~d~~i~v~d~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~--~~~~~~~~~~~~~~ 146 (177)
+.+|++++|+|++.+..... ....+..+.. .++|+++|+||+|+.+..+. ....+.+.. ....
T Consensus 80 ~~~d~~~~vvD~~~~~~~~~~~~~~~~~~~d~~~~~~l~~----~~~p~iiv~NK~D~~~~~~~~~~~~~~~~~~-~~~~ 154 (184)
T d2cxxa1 80 KNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRE----LDIPTIVAVNKLDKIKNVQEVINFLAEKFEV-PLSE 154 (184)
T ss_dssp GGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHH----TTCCEEEEEECGGGCSCHHHHHHHHHHHHTC-CGGG
T ss_pred cccchheeeeeccccchhhhhhhhccccHHHHHHHHHHHH----cCCCEEEEEeeeehhhhHHHHHHHHHHHhcc-cccc
Confidence 77999999999864211110 0111222222 36899999999998754221 222233322 2222
Q ss_pred CceeEEEeeecCCCChHHHHHHHHHHhhhc
Q 030429 147 REVCCYMISCKDSINIDAVIDWLIKHSKTA 176 (177)
Q Consensus 147 ~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~ 176 (177)
....++++||++|.|+++|+++|.+.++++
T Consensus 155 ~~~~~~~vSA~~g~gi~~L~~~i~~~l~e~ 184 (184)
T d2cxxa1 155 IDKVFIPISAKFGDNIERLKNRIFEVIRER 184 (184)
T ss_dssp HHHHEEECCTTTCTTHHHHHHHHHHHHHHC
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHccCC
Confidence 344688999999999999999999998864
|
| >d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.93 E-value=1.2e-25 Score=155.18 Aligned_cols=162 Identities=20% Similarity=0.223 Sum_probs=126.1
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEeCCEEEEEEecCCchhhHHhHHHHhcCCCEEEEEEe
Q 030429 10 KQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVD 89 (177)
Q Consensus 10 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d 89 (177)
++..||+++|..|||||||++++..+. ..+|.|+....+..+++.+++||++|++.++..|..++.+++++++++|
T Consensus 4 k~~~KilllG~~~vGKTsll~~~~~~~----~~pTiG~~~~~~~~~~~~~~~~D~~Gq~~~r~~w~~~~~~~~~ii~v~d 79 (221)
T d1azta2 4 RATHRLLLLGAGESGKSTIVKQMRILH----VVLTSGIFETKFQVDKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVA 79 (221)
T ss_dssp HHSEEEEEECSTTSSHHHHHHHHHHHH----CCCCCSCEEEEEEETTEEEEEEECCCSTTTTTGGGGGCTTCSEEEEEEE
T ss_pred hhcCEEEEECCCCCCHHHHHHHHhcCC----cCCCCCeEEEEEEECcEEEEEEecCccceeccchhhhcccccceEEEEE
Confidence 567899999999999999999997553 3478899988899999999999999999999999999999999999999
Q ss_pred CCCC----------CCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccC------H---------------------
Q 030429 90 AADR----------DSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALS------K--------------------- 132 (177)
Q Consensus 90 ~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~------~--------------------- 132 (177)
.++. ....+....+..++......++|+++++||+|+.+... .
T Consensus 80 ~s~~~~~~~~~~~~~r~~e~~~~~~~il~~~~~~~~~iil~~NK~Dl~~~k~~~~~~~~~~~f~~~~~~~~~~~~~~~~g 159 (221)
T d1azta2 80 SSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRTISVILFLNKQDLLAEKVLAGKSKIEDYFPEFARYTTPEDATPEPG 159 (221)
T ss_dssp TTGGGCBCTTTSCSBHHHHHHHHHHHHHTCGGGSSCEEEEEEECHHHHHHHHHHCSSCHHHHCGGGGGCCCCTTCCCCTT
T ss_pred ccccccccccccchHHHHHHHHHHHHHhcChhhCCCcEEEEechhhhhhhhhccCcccHHHhCccccccCCcccccccCC
Confidence 9853 23556677788888877777899999999999854210 0
Q ss_pred -----HHHHH--------HhCcccccCCceeEEEeeecCCCChHHHHHHHHHHhhh
Q 030429 133 -----QALVD--------QLGLESITDREVCCYMISCKDSINIDAVIDWLIKHSKT 175 (177)
Q Consensus 133 -----~~~~~--------~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~ 175 (177)
.+..+ .........+.+..++|||.++.+++.+|..+.+.+.+
T Consensus 160 ~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~y~h~T~A~Dt~ni~~vf~~v~d~I~~ 215 (221)
T d1azta2 160 EDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHFTCAVDTENIRRVFNDCRDIIQR 215 (221)
T ss_dssp CCHHHHHHHHHHHHHHHHHHTSSCTTSCCEEEEECCTTCHHHHHHHHHTTHHHHHH
T ss_pred CchhHHHHHHHHHHHHHHHhccCCCCCCceeeeecceeccHHHHHHHHHHHHHHHH
Confidence 01111 11111112244556789999999999999887766543
|
| >d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Bacillus subtilis [TaxId: 1423]
Probab=99.92 E-value=2e-24 Score=146.26 Aligned_cols=156 Identities=19% Similarity=0.151 Sum_probs=96.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCCC--CccceeEEEEEeCCEEEEEEecCCch----------hh---HHhHHHH
Q 030429 13 MELSLIGLQNAGKTSLVNTIATGGYSEDMI--PTVGFNMRKVTKGNVTIKLWDLGGQR----------RF---RTMWERY 77 (177)
Q Consensus 13 ~~i~i~G~~~~GKSsli~~l~~~~~~~~~~--~t~~~~~~~~~~~~~~~~~~D~~g~~----------~~---~~~~~~~ 77 (177)
.+|+++|.+|||||||+|+|++........ ++.......... ...+.+.|+++.. .. .......
T Consensus 24 ~~I~lvG~~n~GKSTLin~L~g~~~~~~~~~~~~~t~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (195)
T d1svia_ 24 PEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYII-NDELHFVDVPGYGFAKVSKSEREAWGRMIETYITT 102 (195)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEEE-TTTEEEEECCCBCCCSSCHHHHHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHhcCCCceEEeecccceeeecccccc-cccceEEEEEeeccccccccccchhhhHHhhhhcc
Confidence 389999999999999999999754321111 111111111111 2234455666621 11 1122234
Q ss_pred hcCCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccCHHHHHHHhCcccccCCceeEEEeeec
Q 030429 78 CRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCK 157 (177)
Q Consensus 78 ~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 157 (177)
+..+|++++++|++.+..- .....+..+ .. .++|+++|+||+|+.+.....+..+.+..........+++++||+
T Consensus 103 ~~~~~~vi~viD~~~~~~~-~~~~~~~~l-~~---~~~piivv~NK~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~~SA~ 177 (195)
T d1svia_ 103 REELKAVVQIVDLRHAPSN-DDVQMYEFL-KY---YGIPVIVIATKADKIPKGKWDKHAKVVRQTLNIDPEDELILFSSE 177 (195)
T ss_dssp CTTEEEEEEEEETTSCCCH-HHHHHHHHH-HH---TTCCEEEEEECGGGSCGGGHHHHHHHHHHHHTCCTTSEEEECCTT
T ss_pred ccchhhhhhhhhccccccc-ccccccccc-cc---ccCcceechhhccccCHHHHHHHHHHHHHHhcccCCCCEEEEeCC
Confidence 5668999999999765332 222333333 33 368999999999998766655555544333333455689999999
Q ss_pred CCCChHHHHHHHHHHhh
Q 030429 158 DSINIDAVIDWLIKHSK 174 (177)
Q Consensus 158 ~~~~i~~l~~~l~~~~~ 174 (177)
+|.|+++++++|.+.+.
T Consensus 178 ~~~gi~el~~~i~~~l~ 194 (195)
T d1svia_ 178 TKKGKDEAWGAIKKMIN 194 (195)
T ss_dssp TCTTHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHhC
Confidence 99999999999999875
|
| >d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Archaeon Pyrococcus abyssi [TaxId: 29292]
Probab=99.92 E-value=1.2e-24 Score=147.48 Aligned_cols=162 Identities=17% Similarity=0.171 Sum_probs=108.2
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcCCCCCC-----CCCccceeEEE--E---------------------EeCCEEEEE
Q 030429 10 KQEMELSLIGLQNAGKTSLVNTIATGGYSED-----MIPTVGFNMRK--V---------------------TKGNVTIKL 61 (177)
Q Consensus 10 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~-----~~~t~~~~~~~--~---------------------~~~~~~~~~ 61 (177)
+..++|+++|..++|||||+++|++...... ...|....+.. . ..+...+.+
T Consensus 3 ~~~inIaiiGhvd~GKSTL~~~L~g~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (195)
T d1kk1a3 3 QAEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVSF 82 (195)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEEEE
T ss_pred CCcEEEEEEeccCCcHHHHHHHHHhhhhhhhHHHHHcCcccccchhhhhhhccchhhhccceeeeeeeeeeecCceeEee
Confidence 4568999999999999999999985332111 11111111111 1 112356899
Q ss_pred EecCCchhhHHhHHHHhcCCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccCHHHHHHHhCc
Q 030429 62 WDLGGQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGL 141 (177)
Q Consensus 62 ~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~ 141 (177)
+|+||+..|.......+..+|++++|+|+.+..........+...... ...+++++.||+|+.+.....+..+.+..
T Consensus 83 iDtPGh~~f~~~~~~~~~~~d~~ilvvda~~g~~~~~t~e~~~~~~~~---~~~~iiv~inK~D~~d~~~~~~~~~~~~~ 159 (195)
T d1kk1a3 83 IDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMALQII---GQKNIIIAQNKIELVDKEKALENYRQIKE 159 (195)
T ss_dssp EECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHHHHH---TCCCEEEEEECGGGSCHHHHHHHHHHHHH
T ss_pred eccchhhhhhHHhhcccccccccccccchhhhhhhhhhHHHHHHHHHh---cCccceeeeecccchhhHHHHHHHHHHHH
Confidence 999999999988888888999999999998764334333333333222 13468888999999875433222222211
Q ss_pred --ccccCCceeEEEeeecCCCChHHHHHHHHHHhh
Q 030429 142 --ESITDREVCCYMISCKDSINIDAVIDWLIKHSK 174 (177)
Q Consensus 142 --~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~ 174 (177)
.......++++++||++|.|+++|++.|.+.+.
T Consensus 160 ~~~~~~~~~~~iIpiSA~~G~ni~~Ll~~I~~~iP 194 (195)
T d1kk1a3 160 FIEGTVAENAPIIPISALHGANIDVLVKAIEDFIP 194 (195)
T ss_dssp HHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHSC
T ss_pred HhccccCCCCeEEEEECCCCCCHHHHHHHHHHHCc
Confidence 112234568999999999999999999988753
|
| >d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Sulfolobus solfataricus [TaxId: 2287]
Probab=99.91 E-value=4.2e-24 Score=145.72 Aligned_cols=163 Identities=21% Similarity=0.210 Sum_probs=107.5
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCC-----Cc--cceeEEEE--------------------------EeCC
Q 030429 10 KQEMELSLIGLQNAGKTSLVNTIATGGYSEDMI-----PT--VGFNMRKV--------------------------TKGN 56 (177)
Q Consensus 10 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~-----~t--~~~~~~~~--------------------------~~~~ 56 (177)
+..++|+++|..++|||||+++|++........ .+ .+...... ....
T Consensus 6 ~p~ini~iiGhVd~GKSTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (205)
T d2qn6a3 6 QPEVNIGVVGHVDHGKTTLVQAITGIWTSKHSEELKRGMTIKLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFL 85 (205)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHSCCC--------------CEEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEE
T ss_pred CCCeEEEEEEccCCcHHHHHHHHHhhhchhhHHHHHhhcccccchhhhhhhhhhhhhhhheeeecccceeeeeeccccce
Confidence 445899999999999999999998532111100 00 00111110 0112
Q ss_pred EEEEEEecCCchhhHHhHHHHhcCCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccCHHHHH
Q 030429 57 VTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALV 136 (177)
Q Consensus 57 ~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~ 136 (177)
..+.++|+||+.+|.......+..+|++++|+|+.+.-.-...+..+...... ...|+++++||+|+.+........
T Consensus 86 r~~~iiD~PGH~df~~~~~~~~~~ad~ailvVda~~gi~~~~t~e~~~~~~~~---~i~~iIV~vNK~Dl~~~~~~~~~~ 162 (205)
T d2qn6a3 86 RRISFIDAPGHEVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGII---GVKNLIIVQNKVDVVSKEEALSQY 162 (205)
T ss_dssp EEEEEEECSCHHHHHHHHHHTSSCCSEEEEEEETTSCSSCHHHHHHHHHHHHT---TCCCEEEEEECGGGSCHHHHHHHH
T ss_pred EEEEEeccchHHHHHhhhhcceeccccccccccccccccchhHHHHHHHHHHc---CCceeeeccccCCCccchHHHHHH
Confidence 46899999999999988888899999999999997753223333333333332 235889999999998754332222
Q ss_pred HHhC--cccccCCceeEEEeeecCCCChHHHHHHHHHHhhh
Q 030429 137 DQLG--LESITDREVCCYMISCKDSINIDAVIDWLIKHSKT 175 (177)
Q Consensus 137 ~~~~--~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~ 175 (177)
.... ........++++++||++|.|+++|++.|..++..
T Consensus 163 ~~~~~~l~~~~~~~~p~ipiSA~~g~nI~~L~e~i~~~ip~ 203 (205)
T d2qn6a3 163 RQIKQFTKGTWAENVPIIPVSALHKINIDSLIEGIEEYIKT 203 (205)
T ss_dssp HHHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHSCC
T ss_pred HHHHHHhccccCCCCeEEEEeCCCCCChHHHHHHHHhhCCC
Confidence 2111 12223356789999999999999999999987653
|
| >d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.91 E-value=3.4e-23 Score=141.43 Aligned_cols=158 Identities=25% Similarity=0.306 Sum_probs=107.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEe---CCEEEEEEecCCchhhH-HhHHHHhcCCCEEEEEEe
Q 030429 14 ELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTK---GNVTIKLWDLGGQRRFR-TMWERYCRGVSAILYVVD 89 (177)
Q Consensus 14 ~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~---~~~~~~~~D~~g~~~~~-~~~~~~~~~~d~~i~v~d 89 (177)
+|+++|++|||||||+++|+++.+... .++.+.....+.. ..+.+.+||++|+++++ ..+..++..++++++|+|
T Consensus 2 ~V~ivG~~~~GKTsLl~~l~~~~~~~~-~~t~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~i~v~D 80 (207)
T d2fh5b1 2 AVLFVGLCDSGKTLLFVRLLTGQYRDT-QTSITDSSAIYKVNNNRGNSLTLIDLPGHESLRFQLLDRFKSSARAVVFVVD 80 (207)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSCCCCB-CCCCSCEEEEEECSSTTCCEEEEEECCCCHHHHHHHHHHHGGGEEEEEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCcc-cCCeeEEEEEEEEeeeeeeeeeeeeccccccccchhhhhhhhhccccceEEE
Confidence 699999999999999999998776554 3555555555543 46789999999998886 456778899999999999
Q ss_pred CCCCCCH-HHHHHHHHHHHcC--CCCCCCcEEEEeeCCCcccccCHHHHHHHhCcc-----------------------c
Q 030429 90 AADRDSV-PIARSELHELLMK--PSLSGIPLLVLGNKIDKSEALSKQALVDQLGLE-----------------------S 143 (177)
Q Consensus 90 ~~~~~~~-~~~~~~~~~~~~~--~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~-----------------------~ 143 (177)
+++..++ .....++..++.. .....+|+++|+||+|+......++..+.+... .
T Consensus 81 ~~d~~~~~~~~~~~l~~~l~~~~~~~~~~pilvv~NK~Dl~~a~~~~~i~~~l~~e~~~~~~~~~~~~~~~~~~~~~~~~ 160 (207)
T d2fh5b1 81 SAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAKSAKLIQQQLEKELNTLRVTRSAAPSTLDSSSTAPAQ 160 (207)
T ss_dssp TTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHHHCC------------CCC
T ss_pred cccccccHHHHHHHHHHHHHhHHHhhcCCcEEEEEECcccCCCCCHHHHHHHHHHHhhhhhhccccccceeehhhhhhhh
Confidence 9886543 3444444444321 222468999999999998765554433322100 0
Q ss_pred -----------ccCCceeEEEeeecCCCC------hHHHHHHHHHH
Q 030429 144 -----------ITDREVCCYMISCKDSIN------IDAVIDWLIKH 172 (177)
Q Consensus 144 -----------~~~~~~~~~~~Sa~~~~~------i~~l~~~l~~~ 172 (177)
.......++++|++++.+ ++++-+||.+.
T Consensus 161 ~~~~~~~~~~~~~~~~v~~~~~S~~~~~~~~~~~~i~~~~~wl~~~ 206 (207)
T d2fh5b1 161 LGKKGKEFEFSQLPLKVEFLECSAKGGRGDTGSADIQDLEKWLAKI 206 (207)
T ss_dssp SSCTTSCCCGGGSSSCEEEEECBCC-------CCBCHHHHHHHHHH
T ss_pred hcccchhhhHHhccCCcEEEEeeecCCCcccccccHHHHHHHHHHh
Confidence 001235688999999886 88888887664
|
| >d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Bacillus subtilis [TaxId: 1423]
Probab=99.91 E-value=3.1e-24 Score=144.19 Aligned_cols=158 Identities=17% Similarity=0.207 Sum_probs=103.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCC--CCCCccceeEEEEEe-CCEEEEEEecCCchhhH-------HhHHHHhcCCC
Q 030429 13 MELSLIGLQNAGKTSLVNTIATGGYSE--DMIPTVGFNMRKVTK-GNVTIKLWDLGGQRRFR-------TMWERYCRGVS 82 (177)
Q Consensus 13 ~~i~i~G~~~~GKSsli~~l~~~~~~~--~~~~t~~~~~~~~~~-~~~~~~~~D~~g~~~~~-------~~~~~~~~~~d 82 (177)
.+|+++|.+|||||||+|+|++..... ....|.......... ++..+.+|||||..+.. ......+..++
T Consensus 2 ~~VaiiG~~nvGKSSLin~L~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~~l~~~~~~~ 81 (185)
T d1lnza2 2 ADVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGMVETDDGRSFVMADLPGLIEGAHQGVGLGHQFLRHIERTR 81 (185)
T ss_dssp CCEEEESSTTSSHHHHHHHSEEECCEESSTTSSCCCCCEEEEECSSSCEEEEEEHHHHHHHTTCTTTTHHHHHHHHHHCC
T ss_pred CeEEEECCCCCCHHHHHHHHhCCCCceecCCCceEeeeeceeEecCCcEEEEecCCCcccCchHHHHHHHHHHHHHHHhh
Confidence 369999999999999999998765422 223344444444443 45689999999953211 11122345689
Q ss_pred EEEEEEeCCCCCCHHHHHHHH----HHHHcCCCCCCCcEEEEeeCCCcccccCH-HHHHHHhCcccccCCceeEEEeeec
Q 030429 83 AILYVVDAADRDSVPIARSEL----HELLMKPSLSGIPLLVLGNKIDKSEALSK-QALVDQLGLESITDREVCCYMISCK 157 (177)
Q Consensus 83 ~~i~v~d~~~~~~~~~~~~~~----~~~~~~~~~~~~~~iiv~nK~D~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~ 157 (177)
.++++++....+.......+. ..........++|+++|+||+|+.+.... +.+.+.+. ...+++++||+
T Consensus 82 ~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~ivv~NK~Dl~~~~~~~~~~~~~~~------~~~~v~~iSA~ 155 (185)
T d1lnza2 82 VIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMPEAAENLEAFKEKLT------DDYPVFPISAV 155 (185)
T ss_dssp EEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTSTTHHHHHHHHHHHCC------SCCCBCCCSSC
T ss_pred hhhheeeecccccchhhhhhhhhhhccchhhhhccCCcchhhccccchHhHHHHHHHHHHHhc------cCCcEEEEECC
Confidence 999999877654433221111 11222233346899999999999865322 22333222 34578999999
Q ss_pred CCCChHHHHHHHHHHhhhc
Q 030429 158 DSINIDAVIDWLIKHSKTA 176 (177)
Q Consensus 158 ~~~~i~~l~~~l~~~~~~~ 176 (177)
+|.|+++|++.|.+.+.+.
T Consensus 156 ~g~Gi~~L~~~i~~~L~~~ 174 (185)
T d1lnza2 156 TREGLRELLFEVANQLENT 174 (185)
T ss_dssp CSSTTHHHHHHHHHHHTSC
T ss_pred CCCCHHHHHHHHHHhhhhC
Confidence 9999999999999998654
|
| >d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Cow (Bos taurus), mitochondrial [TaxId: 9913]
Probab=99.91 E-value=1.1e-23 Score=142.18 Aligned_cols=160 Identities=16% Similarity=0.082 Sum_probs=111.9
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhcC-----C-----------C--CCCCCCccceeEEEEEeCCEEEEEEecCCchhhHH
Q 030429 11 QEMELSLIGLQNAGKTSLVNTIATG-----G-----------Y--SEDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRT 72 (177)
Q Consensus 11 ~~~~i~i~G~~~~GKSsli~~l~~~-----~-----------~--~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~ 72 (177)
..+||+++|..++|||||++++++. . . .+...-|.......+...+..+.++|+||+..|..
T Consensus 2 p~ini~iiGHvd~GKSTL~~~l~~~~~~~~~~~~~~~~~~~~~~~Er~rgiTi~~~~~~~~~~~~~~~~iDtPGh~~f~~ 81 (196)
T d1d2ea3 2 PHVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGHADYVK 81 (196)
T ss_dssp CEEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSSCEEEEEECSSHHHHHH
T ss_pred CCcEEEEEeCCCCcHHHHHHHHHHHHHHcCcchhhhhhhcccchhhcCCCccCCcceEEEEeceeeEEeecCcchHHHHH
Confidence 4689999999999999999999731 0 0 11112233344455667889999999999999998
Q ss_pred hHHHHhcCCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccCH-H----HHHHHhCcccccCC
Q 030429 73 MWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSK-Q----ALVDQLGLESITDR 147 (177)
Q Consensus 73 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~-~----~~~~~~~~~~~~~~ 147 (177)
.....+..+|++++|+|+.+... +.....+...... ...|+|++.||+|+.+..+. + ++...+....+...
T Consensus 82 ~~~~~~~~aD~allVVda~~G~~-~QT~~~~~~a~~~---~~~~iIv~iNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~ 157 (196)
T d1d2ea3 82 NMITGTAPLDGCILVVAANDGPM-PQTREHLLLARQI---GVEHVVVYVNKADAVQDSEMVELVELEIRELLTEFGYKGE 157 (196)
T ss_dssp HHHHTSSCCSEEEEEEETTTCSC-HHHHHHHHHHHHT---TCCCEEEEEECGGGCSCHHHHHHHHHHHHHHHHHTTSCTT
T ss_pred HHHHHHhhcCeEEEEEEcCCCCc-hhHHHHHHHHHHh---cCCcEEEEEecccccccHHHHHHHHHHHHHHHHHhCCCcc
Confidence 88888999999999999977543 2233334443333 24689999999999764322 2 22222222223334
Q ss_pred ceeEEEeeecCC----------CChHHHHHHHHHHhh
Q 030429 148 EVCCYMISCKDS----------INIDAVIDWLIKHSK 174 (177)
Q Consensus 148 ~~~~~~~Sa~~~----------~~i~~l~~~l~~~~~ 174 (177)
..+++++|+++| .++++|++.|.+.+.
T Consensus 158 ~~pii~iSa~~g~~~~~~~~~~~~~~~Lldai~~~iP 194 (196)
T d1d2ea3 158 ETPIIVGSALCALEQRDPELGLKSVQKLLDAVDTYIP 194 (196)
T ss_dssp TSCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHHHSC
T ss_pred cCEEEEEEccccccccCcccccCCHHHHHHHHHhhCC
Confidence 578999999998 589999998877653
|
| >d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor IF2/eIF5b, N-terminal (G) domain species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=99.90 E-value=2e-24 Score=149.47 Aligned_cols=156 Identities=21% Similarity=0.208 Sum_probs=102.5
Q ss_pred EEEEcCCCCCHHHHHHHHhcCCCCCC--CCCccceeEEE------------------EEeCCEEEEEEecCCchhhHHhH
Q 030429 15 LSLIGLQNAGKTSLVNTIATGGYSED--MIPTVGFNMRK------------------VTKGNVTIKLWDLGGQRRFRTMW 74 (177)
Q Consensus 15 i~i~G~~~~GKSsli~~l~~~~~~~~--~~~t~~~~~~~------------------~~~~~~~~~~~D~~g~~~~~~~~ 74 (177)
|+++|.+++|||||+++|++...... ...+....... ++.++..+.++||||+..|....
T Consensus 8 IaIiGh~d~GKSTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iDtPGh~~f~~~~ 87 (227)
T d1g7sa4 8 VSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEAFTTLR 87 (227)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHSCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSCCTTSB
T ss_pred EEEEeCCCccHHHHHHHHHhhcchheecCceeeeccccccccccccccccccccceeecccccccccccccceecccccc
Confidence 99999999999999999985321111 01111111111 23456789999999999988777
Q ss_pred HHHhcCCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccCH------------------HHHH
Q 030429 75 ERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSK------------------QALV 136 (177)
Q Consensus 75 ~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~------------------~~~~ 136 (177)
...+..+|++++|+|+.+.-.... ...+..+.. .++|+++|+||+|+.+.... ....
T Consensus 88 ~~~~~~~D~~ilVvda~~g~~~~~-~~~~~~~~~----~~~p~iivlNK~D~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 162 (227)
T d1g7sa4 88 KRGGALADLAILIVDINEGFKPQT-QEALNILRM----YRTPFVVAANKIDRIHGWRVHEGRPFMETFSKQDIQVQQKLD 162 (227)
T ss_dssp CSSSBSCSEEEEEEETTTCCCHHH-HHHHHHHHH----TTCCEEEEEECGGGSTTCCCCTTCCHHHHHTTSCHHHHHHHH
T ss_pred hhcccccceEEEEEecccCcccch-hHHHHHhhc----CCCeEEEEEECccCCCchhhhhhHHHHHhhhcchHHHHHHHH
Confidence 777889999999999976533322 333333333 37899999999998753311 0000
Q ss_pred -------HHhCc----------ccccCCceeEEEeeecCCCChHHHHHHHHHHhhh
Q 030429 137 -------DQLGL----------ESITDREVCCYMISCKDSINIDAVIDWLIKHSKT 175 (177)
Q Consensus 137 -------~~~~~----------~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~ 175 (177)
..+.. ........+++++||++|.|+++|++.|...+.+
T Consensus 163 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~pvSa~~G~gid~Ll~~l~~l~~~ 218 (227)
T d1g7sa4 163 TKVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPELLTMLMGLAQQ 218 (227)
T ss_dssp HHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhhhhhcccccccCCCeEEEeeCCCCCCHHHHHHHHHHHHHH
Confidence 00000 0001234689999999999999999999887653
|
| >d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=99.88 E-value=2.6e-22 Score=136.42 Aligned_cols=142 Identities=18% Similarity=0.148 Sum_probs=99.8
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhcC--------CCC-----------CCCCCccceeEEEEEeCCEEEEEEecCCchhhH
Q 030429 11 QEMELSLIGLQNAGKTSLVNTIATG--------GYS-----------EDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRFR 71 (177)
Q Consensus 11 ~~~~i~i~G~~~~GKSsli~~l~~~--------~~~-----------~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~ 71 (177)
..+||+++|.+++|||||+++|+.. ... +...-|+......+..++..++++||||+.+|.
T Consensus 2 ~~ini~iiGhvd~GKSTL~~~Ll~~~g~~~~~~~~~~~~~~d~~~eE~~rgiTi~~~~~~~~~~~~~i~iiDtPGh~df~ 81 (204)
T d2c78a3 2 PHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHADYI 81 (204)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSSCEEEEEECCCSGGGH
T ss_pred CCeEEEEEeCCCCcHHHHHHHHHHHhhhccCCcchhhhhhcccchHHhcCCeEEEeeEEEEEeCCeEEEEEeCCCchhhH
Confidence 4689999999999999999999621 110 011345566667788899999999999999999
Q ss_pred HhHHHHhcCCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCc-EEEEeeCCCcccccC-HH----HHHHHhCccccc
Q 030429 72 TMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIP-LLVLGNKIDKSEALS-KQ----ALVDQLGLESIT 145 (177)
Q Consensus 72 ~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-~iiv~nK~D~~~~~~-~~----~~~~~~~~~~~~ 145 (177)
......+..+|++++|+|+.+.-..+. ...+...... ++| +++++||+|+.+..+ .+ ++.+.+....+.
T Consensus 82 ~~~~~~~~~aD~avlVvda~~Gv~~qt-~~~~~~~~~~----gi~~iiv~iNK~D~~~~~~~~~~~~~~i~~~l~~~~~~ 156 (204)
T d2c78a3 82 KNMITGAAQMDGAILVVSAADGPMPQT-REHILLARQV----GVPYIVVFMNKVDMVDDPELLDLVEMEVRDLLNQYEFP 156 (204)
T ss_dssp HHHHHHHTTCSSEEEEEETTTCCCHHH-HHHHHHHHHT----TCCCEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHCCEEEEEEECCCCCcHHH-HHHHHHHHHc----CCCeEEEEEEecccCCCHHHHHHHHHHHHHHHHhcCCC
Confidence 988889999999999999977644433 3333433333 555 777899999876432 22 222333323333
Q ss_pred CCceeEEEeeec
Q 030429 146 DREVCCYMISCK 157 (177)
Q Consensus 146 ~~~~~~~~~Sa~ 157 (177)
....++++.|+.
T Consensus 157 ~~~i~~i~~sa~ 168 (204)
T d2c78a3 157 GDEVPVIRGSAL 168 (204)
T ss_dssp TTTSCEEECCHH
T ss_pred cccceeeeeech
Confidence 455678888885
|
| >d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain species: Pseudomonas syringae pv. tomato [TaxId: 323]
Probab=99.87 E-value=5.8e-21 Score=131.00 Aligned_cols=151 Identities=14% Similarity=0.091 Sum_probs=102.6
Q ss_pred cccceeEEEEEcCCCCCHHHHHHHHhcC--CC---------------------------------CCCCCCccceeEEEE
Q 030429 8 FFKQEMELSLIGLQNAGKTSLVNTIATG--GY---------------------------------SEDMIPTVGFNMRKV 52 (177)
Q Consensus 8 ~~~~~~~i~i~G~~~~GKSsli~~l~~~--~~---------------------------------~~~~~~t~~~~~~~~ 52 (177)
+.+..+||+++|..++|||||+.+|+.. .. ......+.......+
T Consensus 5 ~~~~~~~i~viGHVd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~ 84 (222)
T d1zunb3 5 ERKEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYF 84 (222)
T ss_dssp TSCEEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEE
T ss_pred ccCCcceEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHHHHhcCccccceeeeeccccchhhhccCCCceeeEEEE
Confidence 4567799999999999999999999621 11 011112333444455
Q ss_pred EeCCEEEEEEecCCchhhHHhHHHHhcCCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCC-cEEEEeeCCCcccccC
Q 030429 53 TKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGI-PLLVLGNKIDKSEALS 131 (177)
Q Consensus 53 ~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~~iiv~nK~D~~~~~~ 131 (177)
...+..+.++|+||+..|.......+..+|++++|+|+.+...-+. ...+... .. .++ .+++++||+|+.+..+
T Consensus 85 ~~~~~~~~iiD~PGH~dfv~~~~~g~~~aD~ailVvda~~G~~~Qt-~e~~~~~-~~---~gv~~iiv~vNK~D~~~~~~ 159 (222)
T d1zunb3 85 STAKRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQTQT-RRHSYIA-SL---LGIKHIVVAINKMDLNGFDE 159 (222)
T ss_dssp ECSSEEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSCHHH-HHHHHHH-HH---TTCCEEEEEEECTTTTTSCH
T ss_pred eccceEEEEEeccchhhhhhhhccccccCceEEEEeccccCcccch-HHHHHHH-HH---cCCCEEEEEEEccccccccc
Confidence 6678899999999999999988888999999999999977543332 2222222 22 244 4888999999987432
Q ss_pred H--H----HHHHHhCcccccCCceeEEEeeecCCCChH
Q 030429 132 K--Q----ALVDQLGLESITDREVCCYMISCKDSINID 163 (177)
Q Consensus 132 ~--~----~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 163 (177)
. + ++...+....+....++++|+||.+|.|+.
T Consensus 160 ~~~~~~~~~l~~~~~~~~~~~~~i~~IPiSA~~G~ni~ 197 (222)
T d1zunb3 160 RVFESIKADYLKFAEGIAFKPTTMAFVPMSALKGDNVV 197 (222)
T ss_dssp HHHHHHHHHHHHHHHTTTCCCSEEEEEECCTTTCTTTS
T ss_pred eehhhhHHHHhhhhHhhccCCCceEEEEEEcccCccCC
Confidence 1 2 222223223333456789999999999883
|
| >d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=99.85 E-value=6.9e-20 Score=121.92 Aligned_cols=154 Identities=19% Similarity=0.190 Sum_probs=98.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCC--CCCCccc-eeEEEEEeCCEEEEEEecCCchhhHHhH--HH-------HhcCC
Q 030429 14 ELSLIGLQNAGKTSLVNTIATGGYSE--DMIPTVG-FNMRKVTKGNVTIKLWDLGGQRRFRTMW--ER-------YCRGV 81 (177)
Q Consensus 14 ~i~i~G~~~~GKSsli~~l~~~~~~~--~~~~t~~-~~~~~~~~~~~~~~~~D~~g~~~~~~~~--~~-------~~~~~ 81 (177)
.|+++|.+|||||||+|+|++..... ....+.. ........+...+..||+++........ .. ....+
T Consensus 7 ~I~iiG~~nvGKSSLin~L~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (179)
T d1egaa1 7 FIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGAYQAIYVDTPGLHMEEKRAINRLMNKAASSSIGDV 86 (179)
T ss_dssp EEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSCEEEEEEETTEEEEEESSSSCCHHHHHHHHHHHTCCTTSCCCCE
T ss_pred EEEEECCCCCCHHHHHHHHhCCCceeeccCCCceEEEEEeeeecCCceeEeecCCCceecchhhhhhhhhhccccchhhc
Confidence 58999999999999999999765321 1222332 3334455677788888988854332211 11 12356
Q ss_pred CEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccC-HHHHHHHhCcccccCCceeEEEeeecCCC
Q 030429 82 SAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALS-KQALVDQLGLESITDREVCCYMISCKDSI 160 (177)
Q Consensus 82 d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 160 (177)
++++++.|.++. ......+...+.. ...|.++|+||+|...... .....+.+ .......+++++||++|.
T Consensus 87 ~~~l~~~d~~~~--~~~~~~~~~~l~~----~~~~~i~v~~k~d~~~~~~~~~~~~~~~---~~~~~~~~~~~vSA~~g~ 157 (179)
T d1egaa1 87 ELVIFVVEGTRW--TPDDEMVLNKLRE----GKAPVILAVNKVDNVQEKADLLPHLQFL---ASQMNFLDIVPISAETGL 157 (179)
T ss_dssp EEEEEEEETTCC--CHHHHHHHHHHHS----SSSCEEEEEESTTTCCCHHHHHHHHHHH---HTTSCCSEEEECCTTTTT
T ss_pred ceeEEEEecCcc--chhHHHHHHHhhh----ccCceeeeeeeeeccchhhhhhhHhhhh---hhhcCCCCEEEEeCcCCC
Confidence 788888887543 3443444444433 3578999999999876432 11111211 111234579999999999
Q ss_pred ChHHHHHHHHHHhhhc
Q 030429 161 NIDAVIDWLIKHSKTA 176 (177)
Q Consensus 161 ~i~~l~~~l~~~~~~~ 176 (177)
|+++|++.|.+.+.+.
T Consensus 158 gi~~L~~~i~~~lpe~ 173 (179)
T d1egaa1 158 NVDTIAAIVRKHLPEA 173 (179)
T ss_dssp THHHHHHHHHTTCCBC
T ss_pred CHHHHHHHHHHhCCCC
Confidence 9999999999887653
|
| >d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.84 E-value=2.3e-20 Score=127.15 Aligned_cols=118 Identities=21% Similarity=0.295 Sum_probs=85.6
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEeCCEEEEEEecCCchhhHHhHHHH----hcCCCEEEEE
Q 030429 12 EMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTMWERY----CRGVSAILYV 87 (177)
Q Consensus 12 ~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~----~~~~d~~i~v 87 (177)
..+|+++|++|||||||+|+|+++.+.+. .+.......+..++..+.+||+||+..+...+..+ ...++.++++
T Consensus 3 ~p~V~lvG~~n~GKTSLln~l~~~~~~~~--tt~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~~~~~i~~ 80 (209)
T d1nrjb_ 3 QPSIIIAGPQNSGKTSLLTLLTTDSVRPT--VVSQEPLSAADYDGSGVTLVDFPGHVKLRYKLSDYLKTRAKFVKGLIFM 80 (209)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHSSCCCB--CCCSSCEEETTGGGSSCEEEECCCCGGGTHHHHHHHHHHGGGEEEEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCCCe--EEecceEEEEEeCCeEEEEEecccccchhhHHHHHHHHHhhhccccceE
Confidence 45899999999999999999998766533 23333444556777889999999998776555443 4556899999
Q ss_pred EeCCC-CCCHHHHHHHHHHHH---cCCCCCCCcEEEEeeCCCcccccC
Q 030429 88 VDAAD-RDSVPIARSELHELL---MKPSLSGIPLLVLGNKIDKSEALS 131 (177)
Q Consensus 88 ~d~~~-~~~~~~~~~~~~~~~---~~~~~~~~~~iiv~nK~D~~~~~~ 131 (177)
+|+.+ ..+++....++.... ......++|+++|+||+|+.+...
T Consensus 81 vd~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~piiiv~NK~D~~~~~~ 128 (209)
T d1nrjb_ 81 VDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARP 128 (209)
T ss_dssp EETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCC
T ss_pred EEEecccccHHHHHHHHHHHHHHHHHHHhccCCeEEEEEeecccccCc
Confidence 99765 566676666554332 223346799999999999876543
|
| >d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=99.84 E-value=1.5e-19 Score=127.08 Aligned_cols=113 Identities=19% Similarity=0.196 Sum_probs=86.9
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhc--CC------------------CCCCCCCccceeEEEEEeCCEEEEEEecCCchhh
Q 030429 11 QEMELSLIGLQNAGKTSLVNTIAT--GG------------------YSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRF 70 (177)
Q Consensus 11 ~~~~i~i~G~~~~GKSsli~~l~~--~~------------------~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~ 70 (177)
+--||+++|+.|+|||||+.+++. +. .......|+......+..++..++++||||+.+|
T Consensus 5 ~iRni~i~gh~~~GKTtL~e~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~r~~si~~~~~~~~~~~~~~n~iDtPG~~dF 84 (276)
T d2bv3a2 5 RLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWKDHRINIIDAPGHVDF 84 (276)
T ss_dssp GEEEEEEEECTTSCHHHHHHHHHHHHTSSCC-------------------CCCCCCCSEEEEEETTEEEEEECCCSSSSC
T ss_pred hceEEEEEeCCCCCHHHHHHHHHHhcCccccccceecCceEEeccHHHHhcCCccccceeeeccCCeEEEEecCCchhhh
Confidence 344899999999999999999972 10 1122334666677778899999999999999999
Q ss_pred HHhHHHHhcCCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccc
Q 030429 71 RTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSE 128 (177)
Q Consensus 71 ~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~ 128 (177)
.......+..+|++++|+|+.+.-.....+ .|..... .++|.++++||+|...
T Consensus 85 ~~e~~~~l~~~D~avlVvda~~Gv~~~T~~-~w~~a~~----~~lP~i~fINKmDr~~ 137 (276)
T d2bv3a2 85 TIEVERSMRVLDGAIVVFDSSQGVEPQSET-VWRQAEK----YKVPRIAFANKMDKTG 137 (276)
T ss_dssp STTHHHHHHHCCEEEEEEETTTSSCHHHHH-HHHHHHT----TTCCEEEEEECTTSTT
T ss_pred HHHHHHHHHhhhheEEeccccCCcchhHHH-HHHHHHH----cCCCEEEEEecccccc
Confidence 999999999999999999998765444433 3333333 4899999999999865
|
| >d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus, EF-G-2 [TaxId: 274]
Probab=99.81 E-value=2.5e-18 Score=120.44 Aligned_cols=109 Identities=22% Similarity=0.203 Sum_probs=84.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC--C-----------C-------CCCCCccceeEEEEEeCCEEEEEEecCCchhhHHh
Q 030429 14 ELSLIGLQNAGKTSLVNTIATGG--Y-----------S-------EDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTM 73 (177)
Q Consensus 14 ~i~i~G~~~~GKSsli~~l~~~~--~-----------~-------~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~ 73 (177)
+|+++|+.++|||||+.+++... . . .....|+......+..++..++++||||+.+|...
T Consensus 4 Nv~iiGh~~~GKTtL~e~ll~~~g~~~~~g~v~~g~~~~D~~~~E~~r~~ti~~~~~~~~~~~~~~n~iDtPGh~dF~~e 83 (267)
T d2dy1a2 4 TVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDAPGYGDFVGE 83 (267)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEECCCSGGGHHH
T ss_pred EEEEEcCCCCcHHHHHHHHHHHcCCchhhccchhccccccchHHHHHhCCeEEeecccccccccceeEEccCchhhhhhh
Confidence 69999999999999999996211 0 0 11223566667778899999999999999999999
Q ss_pred HHHHhcCCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcc
Q 030429 74 WERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKS 127 (177)
Q Consensus 74 ~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~ 127 (177)
....+..+|++++|+|+.+.-...... .|..... .++|.++++||+|..
T Consensus 84 ~~~al~~~D~avlvvda~~Gv~~~t~~-~~~~~~~----~~~p~~i~iNk~D~~ 132 (267)
T d2dy1a2 84 IRGALEAADAALVAVSAEAGVQVGTER-AWTVAER----LGLPRMVVVTKLDKG 132 (267)
T ss_dssp HHHHHHHCSEEEEEEETTTCSCHHHHH-HHHHHHH----TTCCEEEEEECGGGC
T ss_pred hhhhhcccCceEEEeeccCCccchhHH-HHHhhhh----ccccccccccccccc
Confidence 999999999999999997764444333 3333333 378999999999974
|
| >d1f60a3 c.37.1.8 (A:2-240) Elongation factor eEF-1alpha, N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor eEF-1alpha, N-terminal (G) domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.81 E-value=3.8e-20 Score=128.23 Aligned_cols=149 Identities=16% Similarity=0.177 Sum_probs=103.5
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhc--CCC-------------------------------CCCCCCccceeEEEEEeCC
Q 030429 10 KQEMELSLIGLQNAGKTSLVNTIAT--GGY-------------------------------SEDMIPTVGFNMRKVTKGN 56 (177)
Q Consensus 10 ~~~~~i~i~G~~~~GKSsli~~l~~--~~~-------------------------------~~~~~~t~~~~~~~~~~~~ 56 (177)
+..++|+++|..++|||||+.+|+. +.. .+...-|+......+..++
T Consensus 4 k~~iNi~iiGHvD~GKsTl~~~ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~~ 83 (239)
T d1f60a3 4 KSHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFETPK 83 (239)
T ss_dssp CEEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEECSS
T ss_pred CCccEEEEEeCCCCCHHHHHHHHHHHcCCccHHHHHHHHHHHHHhcCCccceeeecccchhhhcceeccccceeEeccCC
Confidence 3458999999999999999999962 100 1224456667777888899
Q ss_pred EEEEEEecCCchhhHHhHHHHhcCCCEEEEEEeCCCCC------CHHHHHHHHHHHHcCCCCCCC-cEEEEeeCCCcccc
Q 030429 57 VTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAADRD------SVPIARSELHELLMKPSLSGI-PLLVLGNKIDKSEA 129 (177)
Q Consensus 57 ~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~------~~~~~~~~~~~~~~~~~~~~~-~~iiv~nK~D~~~~ 129 (177)
.+++++|+||+.+|...+...+..+|++++|+|++... .-......+...... ++ ++++++||+|+.+.
T Consensus 84 ~~i~iiDtPGH~df~~~~~~g~~~~D~ailvvda~~G~~e~g~~~~~QT~eh~~~~~~~----gv~~iiv~iNKmD~~~~ 159 (239)
T d1f60a3 84 YQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFTL----GVRQLIVAVNKMDSVKW 159 (239)
T ss_dssp EEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHHT----TCCEEEEEEECGGGGTT
T ss_pred EEEEEEECCCcHHHHHHHHHHHHHhCEEEEEEECCCCccccccCchHhHHHHHHHHHHc----CCCeEEEEEECCCCCCC
Confidence 99999999999999998889999999999999996531 011223333322222 44 58889999998764
Q ss_pred cC--H----HHHHHHhCcccccCCceeEEEeeecCCCCh
Q 030429 130 LS--K----QALVDQLGLESITDREVCCYMISCKDSINI 162 (177)
Q Consensus 130 ~~--~----~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i 162 (177)
.. . .++.+.+....+....++++++|+..|.|+
T Consensus 160 d~~~~~~~~~el~~~l~~~~~~~~~i~~ipiSa~~G~ni 198 (239)
T d1f60a3 160 DESRFQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNM 198 (239)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTT
T ss_pred CHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEEccCCCcc
Confidence 32 1 222222222223334567899999999876
|
| >d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal (G) domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor eEF-1alpha, N-terminal (G) domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=99.81 E-value=7.4e-20 Score=126.02 Aligned_cols=151 Identities=17% Similarity=0.157 Sum_probs=97.5
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhcC---------------------------------CCCCCCCCccceeEEEEEeCCE
Q 030429 11 QEMELSLIGLQNAGKTSLVNTIATG---------------------------------GYSEDMIPTVGFNMRKVTKGNV 57 (177)
Q Consensus 11 ~~~~i~i~G~~~~GKSsli~~l~~~---------------------------------~~~~~~~~t~~~~~~~~~~~~~ 57 (177)
..++|+++|..++|||||+.+|+.. ........+.......++.++.
T Consensus 2 p~iNi~viGHVd~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~ti~~~~~~~~~~~~ 81 (224)
T d1jnya3 2 PHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFETKKY 81 (224)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEECSSC
T ss_pred CccEEEEEecCCCCHHHHHHHHHHHcCCccHHHHHHHHHHHHhcCcccccccccccCchhhhcCCccccceEEEEecCCc
Confidence 4689999999999999999999620 0122233344455555677889
Q ss_pred EEEEEecCCchhhHHhHHHHhcCCCEEEEEEeCCCCCC------HHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccc-
Q 030429 58 TIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAADRDS------VPIARSELHELLMKPSLSGIPLLVLGNKIDKSEAL- 130 (177)
Q Consensus 58 ~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~~------~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~- 130 (177)
.++++||||+..|.......+..+|++++|+|+.+... .......+...... ...++++++||+|+....
T Consensus 82 ~i~iiDtPGH~df~~~~~~g~~~~D~allVVda~~G~~~~t~~~~~qt~e~l~~~~~~---~~~~iIv~iNK~D~~~~~~ 158 (224)
T d1jnya3 82 FFTIIDAPGHRDFVKNMITGASQADAAILVVSAKKGEYEAGMSVEGQTREHIILAKTM---GLDQLIVAVNKMDLTEPPY 158 (224)
T ss_dssp EEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECSTTHHHHHHSTTCHHHHHHHHHHHT---TCTTCEEEEECGGGSSSTT
T ss_pred eeEEeeCCCcHHHHHHHHHHHHhhceEEEEEecccCcccccccccchhHHHHHHHHHh---CCCceEEEEEcccCCCccc
Confidence 99999999999999999999999999999999976421 11222222222222 235788899999987532
Q ss_pred C---HHH----HHHHhCcccccCCceeEEEeeecCCCChHH
Q 030429 131 S---KQA----LVDQLGLESITDREVCCYMISCKDSINIDA 164 (177)
Q Consensus 131 ~---~~~----~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 164 (177)
. .+. +.+.+..........+++++||..|.|+.+
T Consensus 159 ~~~~~~~v~~~i~~~~~~~~~~~~~i~~IPISA~~G~NV~~ 199 (224)
T d1jnya3 159 DEKRYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNITH 199 (224)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTTB
T ss_pred cHHHHHHHHHHHHhHHHhcCCCcccCeEEEEEccCCCCccc
Confidence 1 111 122222223334567899999999998753
|
| >d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Escherichia coli [TaxId: 562]
Probab=99.80 E-value=8.1e-19 Score=117.22 Aligned_cols=163 Identities=16% Similarity=0.112 Sum_probs=90.1
Q ss_pred cccccceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCC--CccceeEE-EEEeCCEEEEEEecCCc--------hhhHHhH
Q 030429 6 SLFFKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMI--PTVGFNMR-KVTKGNVTIKLWDLGGQ--------RRFRTMW 74 (177)
Q Consensus 6 ~~~~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~--~t~~~~~~-~~~~~~~~~~~~D~~g~--------~~~~~~~ 74 (177)
.+...+.++|+++|.+|||||||+|++.+........ ++...... .....+......+.++. .......
T Consensus 10 ~~p~~~~~~I~lvG~~NvGKSSL~n~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (188)
T d1puia_ 10 HLPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVADGKRLVDLPGYGYAEVPEEMKRKWQRAL 89 (188)
T ss_dssp GSSCSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEETTEEEEECCCCC------CCHHHHHHHH
T ss_pred HCCCccCCEEEEECCCCCCHHHHHHHHhCCCceEeecccccceeeccceecccccceeeeecccccchhhhhhhhhhhhh
Confidence 3456678999999999999999999998765432211 11111111 12233333333333321 1111111
Q ss_pred ---HHHhcCCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccCHHHHHHHhCcc-cccCCcee
Q 030429 75 ---ERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLE-SITDREVC 150 (177)
Q Consensus 75 ---~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~-~~~~~~~~ 150 (177)
.......+.++.+.+..... ......++...... ..++++++||+|+.+........+.+... .......+
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~----~~~~~~v~~k~D~~~~~~~~~~~~~~~~~l~~~~~~~~ 164 (188)
T d1puia_ 90 GEYLEKRQSLQGLVVLMDIRHPL-KDLDQQMIEWAVDS----NIAVLVLLTKADKLASGARKAQLNMVREAVLAFNGDVQ 164 (188)
T ss_dssp HHHHHHCTTEEEEEEEEETTSCC-CHHHHHHHHHHHHT----TCCEEEEEECGGGSCHHHHHHHHHHHHHHHGGGCSCEE
T ss_pred hhhhhhhhheeEEEEeecccccc-hhHHHHHHHHhhhc----cccccchhhhhhccCHHHHHHHHHHHHHHHHhhCCCCc
Confidence 11223345566666664443 33334444444333 67899999999998764443333222211 11223457
Q ss_pred EEEeeecCCCChHHHHHHHHHHh
Q 030429 151 CYMISCKDSINIDAVIDWLIKHS 173 (177)
Q Consensus 151 ~~~~Sa~~~~~i~~l~~~l~~~~ 173 (177)
++++||++|.|+++|++.|.+.+
T Consensus 165 ~i~vSA~~g~Gid~L~~~i~~~~ 187 (188)
T d1puia_ 165 VETFSSLKKQGVDKLRQKLDTWF 187 (188)
T ss_dssp EEECBTTTTBSHHHHHHHHHHHH
T ss_pred EEEEeCCCCCCHHHHHHHHHHHh
Confidence 99999999999999999998764
|
| >d1r5ba3 c.37.1.8 (A:215-459) Eukaryotic peptide chain release factor ERF2, G domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Eukaryotic peptide chain release factor ERF2, G domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=99.79 E-value=9e-20 Score=126.89 Aligned_cols=155 Identities=20% Similarity=0.205 Sum_probs=88.4
Q ss_pred cccceeEEEEEcCCCCCHHHHHHHHhc--CC-------------------------------CCCCCCCccceeEEEEEe
Q 030429 8 FFKQEMELSLIGLQNAGKTSLVNTIAT--GG-------------------------------YSEDMIPTVGFNMRKVTK 54 (177)
Q Consensus 8 ~~~~~~~i~i~G~~~~GKSsli~~l~~--~~-------------------------------~~~~~~~t~~~~~~~~~~ 54 (177)
..+..++|+++|+.++|||||+.+|+. +. ..+....+.......+..
T Consensus 20 ~~k~~iNi~iiGHVD~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~ti~~~~~~~~~ 99 (245)
T d1r5ba3 20 YGKEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFET 99 (245)
T ss_dssp SCCEEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEEC
T ss_pred cCCCceEEEEEeeCCCCHHHHHHHHHHHcCCccHHHHHHHHHHHHhcCCccchhhhhhhccccccccCcccccccccccc
Confidence 356778999999999999999999952 00 011112233333334556
Q ss_pred CCEEEEEEecCCchhhHHhHHHHhcCCCEEEEEEeCCCCC------CHHHHHHHHHHHHcCCCCCCC-cEEEEeeCCCcc
Q 030429 55 GNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAADRD------SVPIARSELHELLMKPSLSGI-PLLVLGNKIDKS 127 (177)
Q Consensus 55 ~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~------~~~~~~~~~~~~~~~~~~~~~-~~iiv~nK~D~~ 127 (177)
++..+.+.|+||+..|..........+|++++|+|+.+.. ........+...... ++ ++++++||+|+.
T Consensus 100 ~~~~i~~iDtPGH~df~~~~~~g~~~aD~ailVVda~~G~~~~~~~~~~QT~e~l~l~~~~----~i~~iiv~iNKmD~~ 175 (245)
T d1r5ba3 100 EHRRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLARTQ----GINHLVVVINKMDEP 175 (245)
T ss_dssp SSEEEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHHT----TCSSEEEEEECTTST
T ss_pred ccceeeeecccccccchhhhhhhhhhhcceeeEEEcCCCccCCccccccchHHHHHHHHHc----CCCeEEEEEEcCCCC
Confidence 7789999999999999988888899999999999997631 011222222222222 34 478999999987
Q ss_pred cccC----HHHHHHHhCcc----c-c-cCCceeEEEeeecCCCChHHHH
Q 030429 128 EALS----KQALVDQLGLE----S-I-TDREVCCYMISCKDSINIDAVI 166 (177)
Q Consensus 128 ~~~~----~~~~~~~~~~~----~-~-~~~~~~~~~~Sa~~~~~i~~l~ 166 (177)
.... .+++.+++... . + ....++++++||++|.||.+++
T Consensus 176 ~~~~~e~~~~ei~~~l~~~l~~i~~~~~~~~v~~VPiSA~~G~nI~~~~ 224 (245)
T d1r5ba3 176 SVQWSEERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRV 224 (245)
T ss_dssp TCSSCHHHHHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSCC
T ss_pred ccchhHHHHHHHHHHHHHHHHHHhCcCcccCCEEEEeeccCCCCcccch
Confidence 4321 22333333211 0 1 1124689999999999998764
|
| >d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-inducible GTPase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.73 E-value=8.7e-18 Score=124.52 Aligned_cols=156 Identities=17% Similarity=0.200 Sum_probs=91.5
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcCCCCCCC------C-CccceeEEEEEeCCEEEEEEecCCchhhHHhH-----HHH
Q 030429 10 KQEMELSLIGLQNAGKTSLVNTIATGGYSEDM------I-PTVGFNMRKVTKGNVTIKLWDLGGQRRFRTMW-----ERY 77 (177)
Q Consensus 10 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~------~-~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~-----~~~ 77 (177)
+.+++|+++|.+|+|||||+|++.+....... . .|.....+ ...+...+.+|||||........ ...
T Consensus 54 ~~~l~Iai~G~~n~GKSSLiNaL~G~~~~~~~~~~~g~~~tT~~~~~~-~~~~~~~~~l~DtPG~~~~~~~~~~~~~~~~ 132 (400)
T d1tq4a_ 54 SSVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPY-KHPNIPNVVFWDLPGIGSTNFPPDTYLEKMK 132 (400)
T ss_dssp HCCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEE-ECSSCTTEEEEECCCGGGSSCCHHHHHHHTT
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCCcCCCccCCCCCCCCceeeeee-eccCCCeEEEEeCCCcccccccHHHHHHHhh
Confidence 35799999999999999999999974432211 1 12222221 12334468899999954332221 223
Q ss_pred hcCCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccc---------cCHHHH--------HHHhC
Q 030429 78 CRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEA---------LSKQAL--------VDQLG 140 (177)
Q Consensus 78 ~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~---------~~~~~~--------~~~~~ 140 (177)
+..+|+++++.|. +- .......+..+... ++|+++|.||+|.... ...++. .+.+.
T Consensus 133 ~~~~d~~l~~~~~--~~-~~~d~~l~~~l~~~----~k~~~~V~nK~D~~~~~~~~~~~~~~~~e~~l~~ir~~~~~~l~ 205 (400)
T d1tq4a_ 133 FYEYDFFIIISAT--RF-KKNDIDIAKAISMM----KKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFR 205 (400)
T ss_dssp GGGCSEEEEEESS--CC-CHHHHHHHHHHHHT----TCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred hhcceEEEEecCC--CC-CHHHHHHHHHHHHc----CCCEEEEEeCcccccchhhhcccccccHHHHHHHHHHHHHHHHH
Confidence 5568888888764 21 12223333333333 6899999999996421 111222 12222
Q ss_pred cccccCCceeEEEeeecC--CCChHHHHHHHHHHhhh
Q 030429 141 LESITDREVCCYMISCKD--SINIDAVIDWLIKHSKT 175 (177)
Q Consensus 141 ~~~~~~~~~~~~~~Sa~~--~~~i~~l~~~l~~~~~~ 175 (177)
.... ..-++|.+|..+ ..++++|.+.+.+.+.+
T Consensus 206 ~~~~--~~~~vflvS~~~~~~~d~~~L~~~l~~~L~~ 240 (400)
T d1tq4a_ 206 ENGI--AEPPIFLLSNKNVCHYDFPVLMDKLISDLPI 240 (400)
T ss_dssp HTTC--SSCCEEECCTTCTTSTTHHHHHHHHHHHSCG
T ss_pred HcCC--CCCCEEEecCCcccccCHHHHHHHHHHHhHH
Confidence 1111 223678888764 45899999999887754
|
| >d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Chloroplast protein translocon GTPase Toc34 species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=99.66 E-value=2.1e-15 Score=105.46 Aligned_cols=120 Identities=13% Similarity=0.058 Sum_probs=79.0
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHhcCCCCC---CCCCccceeEEEEEeCCEEEEEEecCCchh-------hHHhHHHH-
Q 030429 9 FKQEMELSLIGLQNAGKTSLVNTIATGGYSE---DMIPTVGFNMRKVTKGNVTIKLWDLGGQRR-------FRTMWERY- 77 (177)
Q Consensus 9 ~~~~~~i~i~G~~~~GKSsli~~l~~~~~~~---~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~-------~~~~~~~~- 77 (177)
....++|+++|.+|+|||||+|++++..... ....|..........++..+.++||||-.. .......+
T Consensus 29 ~~~~l~I~LvG~tg~GKSSliN~ilg~~~~~vs~~~~~T~~~~~~~~~~~g~~i~viDTPGl~~~~~~~~~~~~~i~~~~ 108 (257)
T d1h65a_ 29 DVNSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRAGFTLNIIDTPGLIEGGYINDMALNIIKSFL 108 (257)
T ss_dssp TCCEEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSSCCCSSCEEEEEEETTEEEEEEECCCSEETTEECHHHHHHHHHHT
T ss_pred CCCCcEEEEECCCCCcHHHHHHHHhCCCceeecCCCCcceeEEEEEEEeccEEEEEEeeecccCCcchHHHHHHHHHHHH
Confidence 3567999999999999999999999765332 233455566667778999999999999421 11222222
Q ss_pred -hcCCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCC-CCCcEEEEeeCCCccc
Q 030429 78 -CRGVSAILYVVDAADRDSVPIARSELHELLMKPSL-SGIPLLVLGNKIDKSE 128 (177)
Q Consensus 78 -~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~-~~~~~iiv~nK~D~~~ 128 (177)
....|++++|++++...--......+..+...+.. --.++++|.||+|...
T Consensus 109 ~~~~~~~il~v~~~~~~r~~~~~~~~l~~l~~~fg~~~~~~~ivv~t~~D~~~ 161 (257)
T d1h65a_ 109 LDKTIDVLLYVDRLDAYRVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSP 161 (257)
T ss_dssp TTCEECEEEEEEESSCCCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECCSCCC
T ss_pred hcCCCCeEEEEEECCCCCCCHHHHHHHHHHHHHcchhhhhCEEEEEECcccCC
Confidence 23468999999987654333333333333222111 1257899999999865
|
| >d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor 2 (eEF-2), N-terminal (G) domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.61 E-value=3.2e-15 Score=107.79 Aligned_cols=113 Identities=22% Similarity=0.262 Sum_probs=79.0
Q ss_pred cee-EEEEEcCCCCCHHHHHHHHhc--CCC----------------CCCCCCccceeEEEE----------------EeC
Q 030429 11 QEM-ELSLIGLQNAGKTSLVNTIAT--GGY----------------SEDMIPTVGFNMRKV----------------TKG 55 (177)
Q Consensus 11 ~~~-~i~i~G~~~~GKSsli~~l~~--~~~----------------~~~~~~t~~~~~~~~----------------~~~ 55 (177)
..+ +|+++|+.++|||||+.+|+. +.. +....-|+......+ +.+
T Consensus 15 ~~IRNI~iiGhvd~GKTTL~d~Ll~~~g~i~~~~~~~~~~~D~~~~E~eRgiTi~~~~~~l~~~~~~~~~~~~~~~~~~~ 94 (341)
T d1n0ua2 15 TNVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDGN 94 (341)
T ss_dssp GGEEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCSS
T ss_pred ccCcEEEEEeCCCCcHHHHHHHHHHHCCCccccccccccccccchhHHhcCceEeCCEEEEEeccCcccccchhcccccc
Confidence 445 699999999999999999972 100 111112322222222 124
Q ss_pred CEEEEEEecCCchhhHHhHHHHhcCCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccc
Q 030429 56 NVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSE 128 (177)
Q Consensus 56 ~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~ 128 (177)
++.++++||||+..|.......++-+|++++|+|+.+.-..... ..+...... +.|.++++||+|...
T Consensus 95 ~~~inliDtPGh~dF~~ev~~al~~~D~allVVda~eGv~~qT~-~~~~~a~~~----~~p~i~viNKiDr~~ 162 (341)
T d1n0ua2 95 SFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTE-TVLRQALGE----RIKPVVVINKVDRAL 162 (341)
T ss_dssp EEEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHH-HHHHHHHHT----TCEEEEEEECHHHHH
T ss_pred ceEEEEEcCCCcHHHHHHHHHHHhhcCceEEEEecccCcchhHH-HHHHHHHHc----CCCeEEEEECccccc
Confidence 57899999999999999999999999999999999776444443 333334343 789999999999743
|
| >d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: ATP(GTP)-binding protein PAB0955 species: Pyrococcus abyssi [TaxId: 29292]
Probab=99.60 E-value=8.3e-17 Score=111.64 Aligned_cols=116 Identities=16% Similarity=0.026 Sum_probs=68.3
Q ss_pred EEEEEEecCCchhhHHhHHH---H--hcCCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccC
Q 030429 57 VTIKLWDLGGQRRFRTMWER---Y--CRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALS 131 (177)
Q Consensus 57 ~~~~~~D~~g~~~~~~~~~~---~--~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~ 131 (177)
..+.+.|+||+..+...... . ....+.+++++|+.........................|.++|+||+|+...+.
T Consensus 95 ~~~~~id~~g~~~~~~~~~~~~~~~~~~~~~~~v~vvd~~~~~~~~~~~~~~l~~~~~~~~~~~~~ivvinK~D~~~~~~ 174 (244)
T d1yrba1 95 NDYVLIDTPGQMETFLFHEFGVRLMENLPYPLVVYISDPEILKKPNDYCFVRFFALLIDLRLGATTIPALNKVDLLSEEE 174 (244)
T ss_dssp CSEEEEECCSSHHHHHHSHHHHHHHHTSSSCEEEEEECGGGCCSHHHHHHHHHHHHHHHHHHTSCEEEEECCGGGCCHHH
T ss_pred cceeeeccccchhHHHHHHHHHHHHhhccCceEEEEeccccccCchhHhhHHHHHHHHHHHhCCCceeeeeccccccHHH
Confidence 45888899998766433222 1 223568999999865443333222211110000012578999999999987543
Q ss_pred HHHHHHH----------hCcc---------------cccCCceeEEEeeecCCCChHHHHHHHHHH
Q 030429 132 KQALVDQ----------LGLE---------------SITDREVCCYMISCKDSINIDAVIDWLIKH 172 (177)
Q Consensus 132 ~~~~~~~----------~~~~---------------~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~ 172 (177)
....... +... .......+++++||++|+|+++|+..|.+.
T Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~vSa~~geGi~~L~~~l~e~ 240 (244)
T d1yrba1 175 KERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREGFEDLETLAYEH 240 (244)
T ss_dssp HHHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSCCCCCEECCTTTCTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhCCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 2221111 0000 001234579999999999999999998874
|
| >d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: LAO/AO transport system kinase ArgK species: Escherichia coli [TaxId: 562]
Probab=99.60 E-value=4.1e-15 Score=106.95 Aligned_cols=153 Identities=16% Similarity=0.171 Sum_probs=87.5
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhc------CCC-----CCC-----------------CCCccceeEEEEE--------
Q 030429 10 KQEMELSLIGLQNAGKTSLVNTIAT------GGY-----SED-----------------MIPTVGFNMRKVT-------- 53 (177)
Q Consensus 10 ~~~~~i~i~G~~~~GKSsli~~l~~------~~~-----~~~-----------------~~~t~~~~~~~~~-------- 53 (177)
.+.++|+|.|+||+|||||+++|.. ..+ .+. .............
T Consensus 52 ~~~~~IgitG~pGaGKSTLi~~l~~~~~~~g~~vavlavDpss~~~ggailgdr~rm~~~~~~~~~~ir~~~~~g~lgg~ 131 (327)
T d2p67a1 52 GNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDPSSPVTGGSILGDKTRMNDLARAEAAFIRPVPSSGHLGGA 131 (327)
T ss_dssp SCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC---------------CTTTTCTTEEEEEECC-----CH
T ss_pred CCceEEEeeCCCCCCHHHHHHHHHHHHHhcCCceeeecCCCceeeeccccccchhHHHHhcccccccccccccccccccc
Confidence 4679999999999999999999972 110 000 0001111111110
Q ss_pred ------------eCCEEEEEEecCCchhhHHhHHHHhcCCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEe
Q 030429 54 ------------KGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLG 121 (177)
Q Consensus 54 ------------~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~ 121 (177)
..++++.+++|.|...... .....+|.+++|.+....+..+....-+.++ +-++|+
T Consensus 132 ~~~~~~~~~~~~~~g~d~iliEtvG~gq~e~---~i~~~aD~~l~v~~P~~Gd~iq~~k~gi~e~---------aDi~Vv 199 (327)
T d2p67a1 132 SQRARELMLLCEAAGYDVVIVETVGVGQSET---EVARMVDCFISLQIAGGGDDLQGIKKGLMEV---------ADLIVI 199 (327)
T ss_dssp HHHHHHHHHHHHHTTCSEEEEEEECCTTHHH---HHHTTCSEEEEEECC------CCCCHHHHHH---------CSEEEE
T ss_pred hhhhhHHHHHHHhcCCCeEEEeeccccccch---hhhhccceEEEEecCCCchhhhhhchhhhcc---------ccEEEE
Confidence 1235677778887554433 2345589999998865444333333333222 337899
Q ss_pred eCCCcccccCHHH----HHHHhCc--ccccCCceeEEEeeecCCCChHHHHHHHHHHhh
Q 030429 122 NKIDKSEALSKQA----LVDQLGL--ESITDREVCCYMISCKDSINIDAVIDWLIKHSK 174 (177)
Q Consensus 122 nK~D~~~~~~~~~----~~~~~~~--~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~ 174 (177)
||+|......... ....+.. ........+++.|||.+|.|+++|++.|.+...
T Consensus 200 NKaD~~~~~~~~~~~~~~~~al~~~~~~~~~w~p~V~~~SA~~g~Gi~eL~~~I~~~~~ 258 (327)
T d2p67a1 200 NKDDGDNHTNVAIARHMYESALHILRRKYDEWQPRVLTCSALEKRGIDEIWHAIIDFKT 258 (327)
T ss_dssp CCCCTTCHHHHHHHHHHHHHHHHHSCCSBTTBCCEEEECBGGGTBSHHHHHHHHHHHHH
T ss_pred EeecccchHHHHHHHHHHHHHhhhcccCCCCCcceeEEEEeeCCCCHHHHHHHHHHHHH
Confidence 9999876433221 1111111 111122347999999999999999999987543
|
| >d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Metallochaperone MeaB species: Methylobacterium extorquens [TaxId: 408]
Probab=99.54 E-value=1.9e-14 Score=103.29 Aligned_cols=154 Identities=13% Similarity=0.155 Sum_probs=91.5
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHhcC----C-------------C-----CCCCCCc----cc--eeEEEE--------
Q 030429 9 FKQEMELSLIGLQNAGKTSLVNTIATG----G-------------Y-----SEDMIPT----VG--FNMRKV-------- 52 (177)
Q Consensus 9 ~~~~~~i~i~G~~~~GKSsli~~l~~~----~-------------~-----~~~~~~t----~~--~~~~~~-------- 52 (177)
..+.++|+|.|+||+|||||++++... . + -.+.... .. .-....
T Consensus 48 ~~~~~~igitG~pGaGKSTli~~l~~~~~~~g~~vaViavDpss~~~gg~llgdr~rm~~~~~~~~~~ir~~~~~~~~gg 127 (323)
T d2qm8a1 48 TGRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSSTRTGGSILGDKTRMARLAIDRNAFIRPSPSSGTLGG 127 (323)
T ss_dssp CCCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGGGGSSCCCSSCCGGGSTTGGGCTTEEEECCCCCSSHHH
T ss_pred cCCceEEeeeCCCCCCHHHHHHHHHHHHhhcCCceeeeecccccHHHHhccccchhhHHHHhcccceeeccccccccccc
Confidence 346799999999999999999999821 0 0 0000000 00 111110
Q ss_pred ------------EeCCEEEEEEecCCchhhHHhHHHHhcCCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEE
Q 030429 53 ------------TKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVL 120 (177)
Q Consensus 53 ------------~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv 120 (177)
+..++.+.+++|.|........ ...+|.+++|......+..+..+.-+.+ ++=++|
T Consensus 128 ~~~~~~~~i~~~~~~g~d~iiiETVG~gq~e~~~---~~~~D~~v~v~~p~~GD~iQ~~k~gilE---------~aDi~v 195 (323)
T d2qm8a1 128 VAAKTRETMLLCEAAGFDVILVETVGVGQSETAV---ADLTDFFLVLMLPGAGDELQGIKKGIFE---------LADMIA 195 (323)
T ss_dssp HHHHHHHHHHHHHHTTCCEEEEEECSSSSCHHHH---HTTSSEEEEEECSCC------CCTTHHH---------HCSEEE
T ss_pred hhHHHHHHHHhhccCCCCeEEEeehhhhhhhhhh---hcccceEEEEeeccchhhhhhhhhhHhh---------hhheee
Confidence 1135788888999876655433 3449999999998665433332211111 244899
Q ss_pred eeCCCcccccCHHH-----HHHHhCcccc--cCCceeEEEeeecCCCChHHHHHHHHHHhh
Q 030429 121 GNKIDKSEALSKQA-----LVDQLGLESI--TDREVCCYMISCKDSINIDAVIDWLIKHSK 174 (177)
Q Consensus 121 ~nK~D~~~~~~~~~-----~~~~~~~~~~--~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~ 174 (177)
+||+|..+...... ....+..... .....+++.+||.+|.|+++++++|.+...
T Consensus 196 vNKaD~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~p~V~~~Sa~~g~Gi~el~~~I~~~~~ 256 (323)
T d2qm8a1 196 VNKADDGDGERRASAAASEYRAALHILTPPSATWTPPVVTISGLHGKGLDSLWSRIEDHRS 256 (323)
T ss_dssp EECCSTTCCHHHHHHHHHHHHHHHTTBCCSBTTBCCCEEEEBTTTTBSHHHHHHHHHHHHH
T ss_pred EeccccccchHHHHHHHHHHHHHhhcccccccCCCCceEEEEecCCCCHHHHHHHHHHHHH
Confidence 99999876543221 2222222111 123357999999999999999999987643
|
| >d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.28 E-value=4.2e-11 Score=85.07 Aligned_cols=113 Identities=19% Similarity=0.200 Sum_probs=71.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCCcccee-EEEEEe------------------------------------
Q 030429 13 MELSLIGLQNAGKTSLVNTIATGGY-SEDMIPTVGFN-MRKVTK------------------------------------ 54 (177)
Q Consensus 13 ~~i~i~G~~~~GKSsli~~l~~~~~-~~~~~~t~~~~-~~~~~~------------------------------------ 54 (177)
.+|+|+|..++|||||+|++++..+ +....+++... ...+..
T Consensus 27 P~ivvvG~~SsGKSsliNaLlg~~~lP~~~~~~T~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 106 (299)
T d2akab1 27 PQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVTGT 106 (299)
T ss_dssp CEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHHCSS
T ss_pred CeEEEEcCCCCCHHHHHHHHhCCCcCCCCCCccccCCEEEEEeccccceeEEEeCCCCeeCCHHHHHHHHHHHHHHhhCC
Confidence 3799999999999999999998774 44444433211 111100
Q ss_pred ----------------CCEEEEEEecCCch-------------hhHHhHHHHhcCCC-EEEEEEeCCCCCCHHHHHHHHH
Q 030429 55 ----------------GNVTIKLWDLGGQR-------------RFRTMWERYCRGVS-AILYVVDAADRDSVPIARSELH 104 (177)
Q Consensus 55 ----------------~~~~~~~~D~~g~~-------------~~~~~~~~~~~~~d-~~i~v~d~~~~~~~~~~~~~~~ 104 (177)
....+.++|+||.. ........|+..++ ++++|.+++....-.....+..
T Consensus 107 ~~~~~~~~i~l~~~~p~~~~l~liD~PG~~~~~~~~~~~~~~~~i~~~~~~y~~~~~~~il~v~~a~~~~~~~~~~~~~~ 186 (299)
T d2akab1 107 NKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKIAK 186 (299)
T ss_dssp TTCCCSCCEEEEEEETTCCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHHHHHH
T ss_pred CcCcCCccEEEEEcCCCCCCeeEEccCCccccccCCcchhHHHHHHHHHHHHhcCccceeeeecccccchhhhHHHHHHH
Confidence 01237799999932 12344556677776 4556666665555555455544
Q ss_pred HHHcCCCCCCCcEEEEeeCCCcccc
Q 030429 105 ELLMKPSLSGIPLLVLGNKIDKSEA 129 (177)
Q Consensus 105 ~~~~~~~~~~~~~iiv~nK~D~~~~ 129 (177)
.+ .. ...++++|+||+|..+.
T Consensus 187 ~~-~~---~~~r~i~Vltk~D~~~~ 207 (299)
T d2akab1 187 EV-DP---QGQRTIGVITKLDLMDE 207 (299)
T ss_dssp HH-CT---TCSSEEEEEECGGGSCT
T ss_pred Hh-Cc---CCCceeeEEeccccccc
Confidence 44 22 35689999999998765
|
| >d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Dictyostelium discoideum [TaxId: 44689]
Probab=99.23 E-value=8.4e-11 Score=83.74 Aligned_cols=68 Identities=24% Similarity=0.216 Sum_probs=42.7
Q ss_pred EEEEEecCCchh-------------hHHhHHHHhcCCCEEEEEE-eCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeC
Q 030429 58 TIKLWDLGGQRR-------------FRTMWERYCRGVSAILYVV-DAADRDSVPIARSELHELLMKPSLSGIPLLVLGNK 123 (177)
Q Consensus 58 ~~~~~D~~g~~~-------------~~~~~~~~~~~~d~~i~v~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK 123 (177)
.+.++|+||... .......|+..++.+++++ +++....-.....+...+ .. ...++++|+||
T Consensus 132 ~l~iiDtPG~~~~~~~~~~~~~~~~~~~~~~~yi~~~~~~il~v~~~~~~~~~~~~~~~~~~~-~~---~~~r~i~Vitk 207 (306)
T d1jwyb_ 132 NLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDLANSDALQLAKEV-DP---EGKRTIGVITK 207 (306)
T ss_dssp SEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSCSTTCSHHHHHHHH-CS---SCSSEEEEEEC
T ss_pred CceEecCCCccccccCCcchhHHHHHHHHHHHHHhCCCceeEEeecccccccccHHHHHHHHh-Cc---CCCeEEEEEec
Confidence 577999999422 2345566788888766555 554443333344444444 22 34689999999
Q ss_pred CCcccc
Q 030429 124 IDKSEA 129 (177)
Q Consensus 124 ~D~~~~ 129 (177)
+|..+.
T Consensus 208 ~D~~~~ 213 (306)
T d1jwyb_ 208 LDLMDK 213 (306)
T ss_dssp TTSSCS
T ss_pred cccccc
Confidence 998754
|
| >d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=99.19 E-value=8e-11 Score=83.51 Aligned_cols=84 Identities=21% Similarity=0.311 Sum_probs=59.8
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHhcCCC---CCCCCCccceeEEEEEeCC-----------------EEEEEEecCCch
Q 030429 9 FKQEMELSLIGLQNAGKTSLVNTIATGGY---SEDMIPTVGFNMRKVTKGN-----------------VTIKLWDLGGQR 68 (177)
Q Consensus 9 ~~~~~~i~i~G~~~~GKSsli~~l~~~~~---~~~~~~t~~~~~~~~~~~~-----------------~~~~~~D~~g~~ 68 (177)
....++|+++|.|+||||||+|++++... ......|...+...+...+ ..+.+.|+||..
T Consensus 7 ~~~~~kiGivG~Pn~GKSTlfnalT~~~~~~~anypftTi~pn~g~v~v~d~r~~~l~~~~~~~~~~~~~i~~~DvaGLv 86 (296)
T d1ni3a1 7 PGNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLT 86 (296)
T ss_dssp SSSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGC
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHCCCCCCcCCCCccCccCCeEEEeccccchhhhhhcccCCceecccceeeeccccc
Confidence 34779999999999999999999996543 2233445565555554332 578899999832
Q ss_pred hh-------HHhHHHHhcCCCEEEEEEeCCC
Q 030429 69 RF-------RTMWERYCRGVSAILYVVDAAD 92 (177)
Q Consensus 69 ~~-------~~~~~~~~~~~d~~i~v~d~~~ 92 (177)
.. -...-..++.+|+++.|+|+.+
T Consensus 87 ~gA~~g~GLGn~fL~~ir~~d~lihVV~~f~ 117 (296)
T d1ni3a1 87 KGASTGVGLGNAFLSHVRAVDAIYQVVRAFD 117 (296)
T ss_dssp CCCCSSSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred cccccccccHHHHHHHhhccceeEEEEeccC
Confidence 11 1233445888999999999965
|
| >d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Haemophilus influenzae [TaxId: 727]
Probab=99.14 E-value=7.4e-11 Score=82.98 Aligned_cols=80 Identities=24% Similarity=0.288 Sum_probs=54.2
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCCCC--CCCccceeEEEEEeCC-----------------EEEEEEecCCchhhHH
Q 030429 12 EMELSLIGLQNAGKTSLVNTIATGGYSED--MIPTVGFNMRKVTKGN-----------------VTIKLWDLGGQRRFRT 72 (177)
Q Consensus 12 ~~~i~i~G~~~~GKSsli~~l~~~~~~~~--~~~t~~~~~~~~~~~~-----------------~~~~~~D~~g~~~~~~ 72 (177)
.+||+++|.|+||||||++++++...... ...|...+...+...+ ..+.++|+||--...+
T Consensus 2 ~~~~GivG~Pn~GKSTlf~~lt~~~~~~~~ypf~ti~pn~gvv~v~d~r~~~l~~~~~~~~~~~a~i~~~Di~GLi~ga~ 81 (278)
T d1jala1 2 GFKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGAS 81 (278)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTHH
T ss_pred CceEEEECCCCCCHHHHHHHHHCCCCccccCCCCCCCCceEEEecccHhHHHHHHhcCCCceeeeeEEEEEccccCCCcc
Confidence 47999999999999999999997664332 2334454444444322 3588999999432222
Q ss_pred -------hHHHHhcCCCEEEEEEeCC
Q 030429 73 -------MWERYCRGVSAILYVVDAA 91 (177)
Q Consensus 73 -------~~~~~~~~~d~~i~v~d~~ 91 (177)
..-.+++.+|+++.|+|+.
T Consensus 82 ~g~Glg~~FL~~ir~~d~LihVVr~f 107 (278)
T d1jala1 82 KGEGLGNKFLANIRETDAIGHVVRCF 107 (278)
T ss_dssp HHGGGTCCHHHHHHTCSEEEEEEECS
T ss_pred cCCCccHHHHHHHHhccceEEEeecc
Confidence 2234578899999999985
|
| >d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein PH0525 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=99.14 E-value=8.2e-11 Score=84.30 Aligned_cols=80 Identities=24% Similarity=0.289 Sum_probs=44.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCC--ccceeEEEE----E--------------------eCCEEEEEEecCC
Q 030429 13 MELSLIGLQNAGKTSLVNTIATGGYSEDMIP--TVGFNMRKV----T--------------------KGNVTIKLWDLGG 66 (177)
Q Consensus 13 ~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~--t~~~~~~~~----~--------------------~~~~~~~~~D~~g 66 (177)
++|+++|.|+||||||+|++++........+ |...+.... + .....++++|+||
T Consensus 1 ~~v~lvG~pn~GKStlfn~lt~~~~~v~nypftT~~pn~Gv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~pG 80 (319)
T d1wxqa1 1 MEIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVAG 80 (319)
T ss_dssp CEEEEEECTTSSHHHHHHHHHC--------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC-
T ss_pred CcEeEECCCCCCHHHHHHHHHCCCCchhcCCCCcccCccceeeCCCCchhhhhhhccCccccccccccccccEEEEECCC
Confidence 5899999999999999999997654332222 322221111 0 1225799999999
Q ss_pred chhhHH----hHH---HHhcCCCEEEEEEeCCC
Q 030429 67 QRRFRT----MWE---RYCRGVSAILYVVDAAD 92 (177)
Q Consensus 67 ~~~~~~----~~~---~~~~~~d~~i~v~d~~~ 92 (177)
--...+ .-. ..++.+|++++|+|+++
T Consensus 81 li~ga~~g~~~~~~~l~~i~~~d~ii~VVd~~~ 113 (319)
T d1wxqa1 81 LVPGAHEGRGLGNKFLDDLRMASALIHVVDATG 113 (319)
T ss_dssp --------------CCCSSTTCSEEEEEEETTC
T ss_pred cccchhcccchHHHHHHhhccceEEEEEecccc
Confidence 533221 111 23567999999999964
|
| >d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase YlqF species: Bacillus subtilis [TaxId: 1423]
Probab=98.76 E-value=2.4e-09 Score=74.85 Aligned_cols=55 Identities=24% Similarity=0.310 Sum_probs=35.1
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcCCCCCC---CCCccceeEEEEEeCCEEEEEEecCCc
Q 030429 10 KQEMELSLIGLQNAGKTSLVNTIATGGYSED---MIPTVGFNMRKVTKGNVTIKLWDLGGQ 67 (177)
Q Consensus 10 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~~~---~~~t~~~~~~~~~~~~~~~~~~D~~g~ 67 (177)
...++|+++|.|+||||||+|++.+...... .+.|...+... .+..+.++||||.
T Consensus 110 ~~~~~v~vvG~PNvGKSsliN~L~~~~~~~~~~~pG~Tr~~~~i~---~~~~~~l~DTPGi 167 (273)
T d1puja_ 110 PRAIRALIIGIPNVGKSTLINRLAKKNIAKTGDRPGITTSQQWVK---VGKELELLDTPGI 167 (273)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHTSCCC------------CCEE---ETTTEEEEECCCC
T ss_pred CCceEEEEEecCccchhhhhhhhhccceEEECCcccccccceEEE---CCCCeEEecCCCc
Confidence 4679999999999999999999997653221 11222222221 2235788899994
|
| >d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase YlqF species: Bacillus subtilis [TaxId: 1423]
Probab=98.69 E-value=1.8e-08 Score=70.32 Aligned_cols=92 Identities=16% Similarity=0.163 Sum_probs=67.0
Q ss_pred HHhHHHHhcCCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccCHHHHHHHhCcccccCCcee
Q 030429 71 RTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVC 150 (177)
Q Consensus 71 ~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (177)
...+...++.+|+++.|+|+-+|-+..+ ..+..++ .++|.++|+||+|+.+.+..+++.+.+.. ....
T Consensus 6 ~r~i~~~i~~~DvIl~V~DaR~P~ss~~--~~l~~~~-----~~Kp~IlVlNK~DLv~~~~~~~w~~~f~~-----~~~~ 73 (273)
T d1puja_ 6 RREVTEKLKLIDIVYELVDARIPMSSRN--PMIEDIL-----KNKPRIMLLNKADKADAAVTQQWKEHFEN-----QGIR 73 (273)
T ss_dssp HHHHHHHGGGCSEEEEEEETTSTTTTSC--HHHHHHC-----SSSCEEEEEECGGGSCHHHHHHHHHHHHT-----TTCC
T ss_pred HHHHHHHHHhCCEEEEEEECCCCCCCCC--HHHHHHH-----cCCCeEEEEECccCCchHHHHHHHHHHHh-----cCCc
Confidence 3445667899999999999977654433 2333433 25799999999999987666666665543 2336
Q ss_pred EEEeeecCCCChHHHHHHHHHHhh
Q 030429 151 CYMISCKDSINIDAVIDWLIKHSK 174 (177)
Q Consensus 151 ~~~~Sa~~~~~i~~l~~~l~~~~~ 174 (177)
.+++|+.++.+..++...+.+.+.
T Consensus 74 ~i~isa~~~~~~~~~~~~~~~~l~ 97 (273)
T d1puja_ 74 SLSINSVNGQGLNQIVPASKEILQ 97 (273)
T ss_dssp EEECCTTTCTTGGGHHHHHHHHHH
T ss_pred cceeecccCCCccccchhhhhhhh
Confidence 889999999999988887776654
|
| >d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=98.57 E-value=6.7e-08 Score=65.02 Aligned_cols=86 Identities=14% Similarity=0.103 Sum_probs=59.4
Q ss_pred hcCCCEEEEEEeCCCCCC-HHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccCHHHHHHHhCcccccCCceeEEEeee
Q 030429 78 CRGVSAILYVVDAADRDS-VPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISC 156 (177)
Q Consensus 78 ~~~~d~~i~v~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 156 (177)
+...|.+++|+++.+|+. ...+.+++...... ++|.++|+||+|+.+..+.+.+.+..... ....+++.+|+
T Consensus 8 vANiD~vliV~s~~~P~~~~~~ldR~Lv~a~~~----~i~pvIvlnK~DL~~~~~~~~~~~~~~~~---~~~~~v~~vSa 80 (225)
T d1u0la2 8 VANVDQVILVVTVKMPETSTYIIDKFLVLAEKN----ELETVMVINKMDLYDEDDLRKVRELEEIY---SGLYPIVKTSA 80 (225)
T ss_dssp EESCCEEEEEECSSTTCCCHHHHHHHHHHHHHT----TCEEEEEECCGGGCCHHHHHHHHHHHHHH---TTTSCEEECCT
T ss_pred cccCCEEEEEEeCCCCCCCHHHHHHHHHHHHHc----CCCEEEEEeCcccCCHHHHHHHHHhhccc---ccceeEEEecc
Confidence 456899999999987654 34445454444343 78999999999998765444443333211 11236899999
Q ss_pred cCCCChHHHHHHHH
Q 030429 157 KDSINIDAVIDWLI 170 (177)
Q Consensus 157 ~~~~~i~~l~~~l~ 170 (177)
+++.|+++|.+.+.
T Consensus 81 ~~~~g~~~L~~~l~ 94 (225)
T d1u0la2 81 KTGMGIEELKEYLK 94 (225)
T ss_dssp TTCTTHHHHHHHHS
T ss_pred ccchhHhhHHHHhc
Confidence 99999999988763
|
| >d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=98.56 E-value=2.7e-08 Score=66.94 Aligned_cols=55 Identities=25% Similarity=0.231 Sum_probs=34.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCC----------CCCCCccceeEEEEEeCCEEEEEEecCCchhh
Q 030429 13 MELSLIGLQNAGKTSLVNTIATGGYS----------EDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRF 70 (177)
Q Consensus 13 ~~i~i~G~~~~GKSsli~~l~~~~~~----------~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~ 70 (177)
-..+++|++|||||||+|+|.+.... .....|.......+..+ -.++||||-+.+
T Consensus 96 kt~~~~G~SGVGKSTLiN~L~~~~~~~T~~vs~~~~rGrHTTt~~~l~~l~~g---g~iiDTPG~r~~ 160 (225)
T d1u0la2 96 KISTMAGLSGVGKSSLLNAINPGLKLRVSEVSEKLQRGRHTTTTAQLLKFDFG---GYVVDTPGFANL 160 (225)
T ss_dssp SEEEEECSTTSSHHHHHHHHSTTCCCC-------------CCCSCCEEECTTS---CEEESSCSSTTC
T ss_pred CeEEEECCCCCCHHHHHHhhcchhhhhccCcccccCCCCccccceeEEEECCC---cEEEeCCccccc
Confidence 46789999999999999999854221 11223333444443333 356799996544
|
| >d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermotoga maritima [TaxId: 2336]
Probab=98.46 E-value=1.5e-08 Score=67.83 Aligned_cols=30 Identities=17% Similarity=0.362 Sum_probs=25.6
Q ss_pred eecccccceeEEEEEcCCCCCHHHHHHHHh
Q 030429 4 HISLFFKQEMELSLIGLQNAGKTSLVNTIA 33 (177)
Q Consensus 4 ~~~~~~~~~~~i~i~G~~~~GKSsli~~l~ 33 (177)
..++...++.-|+++|++||||||.+-++.
T Consensus 3 ~l~~~~~~p~vi~lvGptGvGKTTTiAKLA 32 (213)
T d1vmaa2 3 KLNVPPEPPFVIMVVGVNGTGKTTSCGKLA 32 (213)
T ss_dssp CCCCCSSSCEEEEEECCTTSSHHHHHHHHH
T ss_pred cCcCCCCCCEEEEEECCCCCCHHHHHHHHH
Confidence 456677788899999999999999987776
|
| >d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Hypothetical protein YjiA, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=98.45 E-value=5.1e-07 Score=60.91 Aligned_cols=22 Identities=36% Similarity=0.456 Sum_probs=19.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 030429 14 ELSLIGLQNAGKTSLVNTIATG 35 (177)
Q Consensus 14 ~i~i~G~~~~GKSsli~~l~~~ 35 (177)
-.+|.|.-|||||||+++++..
T Consensus 5 v~iitGFLGaGKTTll~~lL~~ 26 (222)
T d1nija1 5 VTLLTGFLGAGKTTLLRHILNE 26 (222)
T ss_dssp EEEEEESSSSSCHHHHHHHHHS
T ss_pred EEEEeeCCCCCHHHHHHHHHhc
Confidence 3688999999999999999853
|
| >d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Escherichia coli [TaxId: 562]
Probab=98.39 E-value=9.5e-08 Score=63.75 Aligned_cols=28 Identities=21% Similarity=0.398 Sum_probs=23.4
Q ss_pred cccccceeEEEEEcCCCCCHHHHHHHHh
Q 030429 6 SLFFKQEMELSLIGLQNAGKTSLVNTIA 33 (177)
Q Consensus 6 ~~~~~~~~~i~i~G~~~~GKSsli~~l~ 33 (177)
++..+.+.-|+++|++||||||.+-+|.
T Consensus 3 ~~~~~~p~vi~lvGptGvGKTTTiAKLA 30 (211)
T d2qy9a2 3 NVEGKAPFVILMVGVNGVGKTTTIGKLA 30 (211)
T ss_dssp CCCSCTTEEEEEECCTTSCHHHHHHHHH
T ss_pred CCCCCCCEEEEEECCCCCCHHHHHHHHH
Confidence 4455666788999999999999998887
|
| >d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Bacillus subtilis [TaxId: 1423]
Probab=98.38 E-value=2.9e-08 Score=67.06 Aligned_cols=53 Identities=19% Similarity=0.152 Sum_probs=30.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCC----------CCCCCCccceeEEEEEeCCEEEEEEecCCchhh
Q 030429 14 ELSLIGLQNAGKTSLVNTIATGGY----------SEDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRF 70 (177)
Q Consensus 14 ~i~i~G~~~~GKSsli~~l~~~~~----------~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~ 70 (177)
..+++|++|||||||+|+|.+... ......|....... .++- .++||||.+.+
T Consensus 99 ~~vl~G~SGVGKSSLiN~L~~~~~~~t~~vs~~~~rGrHTTt~~~l~~--~~gg--~iiDTPG~r~~ 161 (231)
T d1t9ha2 99 TTVFAGQSGVGKSSLLNAISPELGLRTNEISEHLGRGKHTTRHVELIH--TSGG--LVADTPGFSSL 161 (231)
T ss_dssp EEEEEESHHHHHHHHHHHHCC-------------------CCCCCEEE--ETTE--EEESSCSCSSC
T ss_pred eEEEECCCCccHHHHHHhhccHhHhhhcccccccCCCceeeeeEEEEe--cCCC--EEEECCccccc
Confidence 467999999999999999985421 11122233333333 2332 36699996544
|
| >d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Thermus aquaticus [TaxId: 271]
Probab=98.32 E-value=1.1e-07 Score=63.45 Aligned_cols=67 Identities=18% Similarity=0.170 Sum_probs=36.6
Q ss_pred CCEEEEEEecCCchhhH----HhHHHH--hcCCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccc
Q 030429 55 GNVTIKLWDLGGQRRFR----TMWERY--CRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSE 128 (177)
Q Consensus 55 ~~~~~~~~D~~g~~~~~----~~~~~~--~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~ 128 (177)
.+.++.++||+|-.... ..+..+ ....+-+++|.|++....-......+...... -=+++||.|-..
T Consensus 91 ~~~d~vlIDTaGr~~~d~~~~~el~~~~~~~~~~~~llv~~a~~~~~~~~~~~~f~~~~~~-------~~~I~TKlDe~~ 163 (207)
T d1ls1a2 91 EARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTGQEALSVARAFDEKVGV-------TGLVLTKLDGDA 163 (207)
T ss_dssp HTCCEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGTHHHHHHHHHHHHHTCC-------CEEEEECGGGCS
T ss_pred ccCcceeecccccchhhhhhHHHHHHHHhhcCCceEEEEeccccchhHHHHHHHHHhhCCC-------CeeEEeecCccc
Confidence 34678999999933221 111221 34578999999986652222222222222111 126799999654
|
| >d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Bacillus subtilis [TaxId: 1423]
Probab=98.31 E-value=7.7e-08 Score=64.94 Aligned_cols=87 Identities=16% Similarity=0.159 Sum_probs=57.7
Q ss_pred hcCCCEEEEEEeCCCCC-CHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccccCHHHHHHHhCcccccCCceeEEEeee
Q 030429 78 CRGVSAILYVVDAADRD-SVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISC 156 (177)
Q Consensus 78 ~~~~d~~i~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 156 (177)
+...|.+++|+++.+|+ +...+.+++..... .+++.++|+||+|+.+..+.++..+.+.. .+...+.+++.+|+
T Consensus 8 vANiD~~~iV~s~~~P~~~~~~idR~Lv~a~~----~~i~pvIvlnK~DL~~~~~~~~~~~~~~~-~y~~~g~~v~~~Sa 82 (231)
T d1t9ha2 8 ICNVDQAVLVFSAVQPSFSTALLDRFLVLVEA----NDIQPIICITKMDLIEDQDTEDTIQAYAE-DYRNIGYDVYLTSS 82 (231)
T ss_dssp EECCCEEEEEEESTTTTCCHHHHHHHHHHHHT----TTCEEEEEEECGGGCCCHHHHHHHHHHHH-HHHHHTCCEEECCH
T ss_pred ccccCEEEEEEECCCCCCCHHHHHHHHHHHHH----cCCCEEEEEecccccccHHHHHHHHHHHH-HHhhccccceeeec
Confidence 45689999999998765 34444554444433 37888999999999876443333222211 11112347899999
Q ss_pred cCCCChHHHHHHH
Q 030429 157 KDSINIDAVIDWL 169 (177)
Q Consensus 157 ~~~~~i~~l~~~l 169 (177)
+++.|+++|.+.+
T Consensus 83 ~~~~gl~~L~~~l 95 (231)
T d1t9ha2 83 KDQDSLADIIPHF 95 (231)
T ss_dssp HHHTTCTTTGGGG
T ss_pred CChhHHHHHHHhh
Confidence 9999999887665
|
| >d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermus aquaticus [TaxId: 271]
Probab=98.27 E-value=1.4e-07 Score=62.78 Aligned_cols=23 Identities=17% Similarity=0.436 Sum_probs=19.4
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHh
Q 030429 11 QEMELSLIGLQNAGKTSLVNTIA 33 (177)
Q Consensus 11 ~~~~i~i~G~~~~GKSsli~~l~ 33 (177)
++--|+++|++||||||.+-+|.
T Consensus 5 ~~~vi~lvGptGvGKTTTiaKLA 27 (207)
T d1okkd2 5 KGRVVLVVGVNGVGKTTTIAKLG 27 (207)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHH
Confidence 44567899999999999988776
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Probab=98.26 E-value=2.4e-07 Score=59.99 Aligned_cols=22 Identities=36% Similarity=0.590 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHhc
Q 030429 13 MELSLIGLQNAGKTSLVNTIAT 34 (177)
Q Consensus 13 ~~i~i~G~~~~GKSsli~~l~~ 34 (177)
+||+++|++|||||||++.+++
T Consensus 1 ~ki~I~G~~G~GKSTLl~~i~~ 22 (178)
T d1ye8a1 1 MKIIITGEPGVGKTTLVKKIVE 22 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCcHHHHHHHHHHh
Confidence 5899999999999999999984
|
| >d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Archaeon Acidianus ambivalens [TaxId: 2283]
Probab=98.23 E-value=1.7e-07 Score=62.53 Aligned_cols=27 Identities=26% Similarity=0.374 Sum_probs=18.0
Q ss_pred ccccceeEEEEEcCCCCCHHHHHHHHh
Q 030429 7 LFFKQEMELSLIGLQNAGKTSLVNTIA 33 (177)
Q Consensus 7 ~~~~~~~~i~i~G~~~~GKSsli~~l~ 33 (177)
+..+.+.-|+++|++||||||.+-+|.
T Consensus 7 ~~~k~p~vi~lvGptGvGKTTTiAKLA 33 (211)
T d1j8yf2 7 IPDKIPYVIMLVGVQGTGKATTAGKLA 33 (211)
T ss_dssp SCSSSSEEEEEECSCCC----HHHHHH
T ss_pred CCCCCCEEEEEECCCCCCHHHHHHHHH
Confidence 344556778899999999999988876
|
| >d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Probable kinase LmjF30.1890 species: Leishmania major [TaxId: 5664]
Probab=98.20 E-value=4.2e-07 Score=58.50 Aligned_cols=26 Identities=27% Similarity=0.445 Sum_probs=23.8
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHhc
Q 030429 9 FKQEMELSLIGLQNAGKTSLVNTIAT 34 (177)
Q Consensus 9 ~~~~~~i~i~G~~~~GKSsli~~l~~ 34 (177)
.++.++|+++|++||||||+.+.|..
T Consensus 2 ~pk~~~I~i~G~~GsGKTT~~~~La~ 27 (174)
T d1y63a_ 2 QPKGINILITGTPGTGKTSMAEMIAA 27 (174)
T ss_dssp CCSSCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCCCEEEEEeCCCCCHHHHHHHHHH
Confidence 57889999999999999999999973
|
| >d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]
Probab=98.10 E-value=8.9e-07 Score=58.05 Aligned_cols=24 Identities=25% Similarity=0.372 Sum_probs=22.3
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHh
Q 030429 10 KQEMELSLIGLQNAGKTSLVNTIA 33 (177)
Q Consensus 10 ~~~~~i~i~G~~~~GKSsli~~l~ 33 (177)
++.++|+++|+|||||||....|.
T Consensus 1 p~~~riil~G~pGSGKsT~a~~La 24 (190)
T d1ak2a1 1 PKGVRAVLLGPPGAGKGTQAPKLA 24 (190)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHH
T ss_pred CCccEEEEECCCCCCHHHHHHHHH
Confidence 467899999999999999999997
|
| >d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain species: Haemophilus influenzae [TaxId: 727]
Probab=98.08 E-value=7.4e-07 Score=57.80 Aligned_cols=22 Identities=32% Similarity=0.611 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHhc
Q 030429 13 MELSLIGLQNAGKTSLVNTIAT 34 (177)
Q Consensus 13 ~~i~i~G~~~~GKSsli~~l~~ 34 (177)
-+|+|+|++|||||||+++|..
T Consensus 8 K~I~i~G~~GsGKTTla~~La~ 29 (192)
T d1lw7a2 8 KTVAILGGESSGKSVLVNKLAA 29 (192)
T ss_dssp EEEEEECCTTSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999973
|
| >d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]
Probab=98.04 E-value=1.1e-06 Score=56.35 Aligned_cols=21 Identities=33% Similarity=0.455 Sum_probs=19.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHh
Q 030429 13 MELSLIGLQNAGKTSLVNTIA 33 (177)
Q Consensus 13 ~~i~i~G~~~~GKSsli~~l~ 33 (177)
.+|+++|+|||||||+.+.|.
T Consensus 5 ~~I~i~G~pGsGKTTia~~La 25 (173)
T d1rkba_ 5 PNILLTGTPGVGKTTLGKELA 25 (173)
T ss_dssp CCEEEECSTTSSHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 589999999999999999997
|
| >d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.00 E-value=8.5e-07 Score=58.87 Aligned_cols=21 Identities=24% Similarity=0.482 Sum_probs=19.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHh
Q 030429 13 MELSLIGLQNAGKTSLVNTIA 33 (177)
Q Consensus 13 ~~i~i~G~~~~GKSsli~~l~ 33 (177)
.-|+++|.|||||||+.++|.
T Consensus 3 ~li~l~GlpgsGKSTla~~L~ 23 (213)
T d1bifa1 3 TLIVMVGLPARGKTYISKKLT 23 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHH
Confidence 458999999999999999997
|
| >d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Dictyostelium discoideum [TaxId: 44689]
Probab=98.00 E-value=2e-06 Score=56.43 Aligned_cols=27 Identities=15% Similarity=0.121 Sum_probs=23.0
Q ss_pred cccceeEEEEEcCCCCCHHHHHHHHhc
Q 030429 8 FFKQEMELSLIGLQNAGKTSLVNTIAT 34 (177)
Q Consensus 8 ~~~~~~~i~i~G~~~~GKSsli~~l~~ 34 (177)
+..++..|+++|+|||||||+.++|..
T Consensus 2 ~~~kp~iI~i~G~pGSGKsT~a~~La~ 28 (194)
T d1qf9a_ 2 EKSKPNVVFVLGGPGSGKGTQCANIVR 28 (194)
T ss_dssp CCCCCEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHH
Confidence 345667889999999999999999973
|
| >d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Maize (Zea mays) [TaxId: 4577]
Probab=97.99 E-value=1.5e-06 Score=56.94 Aligned_cols=23 Identities=17% Similarity=0.344 Sum_probs=21.4
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHh
Q 030429 11 QEMELSLIGLQNAGKTSLVNTIA 33 (177)
Q Consensus 11 ~~~~i~i~G~~~~GKSsli~~l~ 33 (177)
++++|+|+|+|||||||+.+.|.
T Consensus 2 ~Pm~I~i~GppGsGKsT~a~~La 24 (189)
T d1zaka1 2 DPLKVMISGAPASGKGTQCELIK 24 (189)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHH
Confidence 57899999999999999999997
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Probab=97.97 E-value=2.1e-06 Score=58.40 Aligned_cols=32 Identities=28% Similarity=0.424 Sum_probs=29.3
Q ss_pred eeecccccceeEEEEEcCCCCCHHHHHHHHhc
Q 030429 3 LHISLFFKQEMELSLIGLQNAGKTSLVNTIAT 34 (177)
Q Consensus 3 ~~~~~~~~~~~~i~i~G~~~~GKSsli~~l~~ 34 (177)
.+.++..+..-+++|+|+.|||||||++.+.+
T Consensus 20 ~~isl~i~~Ge~vaIvG~sGsGKSTLl~ll~g 51 (241)
T d2pmka1 20 DNINLSIKQGEVIGIVGRSGSGKSTLTKLIQR 51 (241)
T ss_dssp EEEEEEEETTCEEEEECSTTSSHHHHHHHHTT
T ss_pred eeeEEEEcCCCEEEEECCCCCCHHHHHHHHHh
Confidence 56788899999999999999999999999974
|
| >d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Escherichia coli [TaxId: 562]
Probab=97.95 E-value=2.2e-06 Score=54.74 Aligned_cols=20 Identities=25% Similarity=0.451 Sum_probs=18.8
Q ss_pred EEEEEcCCCCCHHHHHHHHh
Q 030429 14 ELSLIGLQNAGKTSLVNTIA 33 (177)
Q Consensus 14 ~i~i~G~~~~GKSsli~~l~ 33 (177)
-++|+|.+|||||||++++.
T Consensus 4 vi~itG~~GSGKTTL~~~L~ 23 (170)
T d1np6a_ 4 LLAFAAWSGTGKTTLLKKLI 23 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHH
Confidence 48999999999999999998
|
| >d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=97.95 E-value=2.4e-06 Score=55.34 Aligned_cols=21 Identities=43% Similarity=0.662 Sum_probs=19.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHh
Q 030429 13 MELSLIGLQNAGKTSLVNTIA 33 (177)
Q Consensus 13 ~~i~i~G~~~~GKSsli~~l~ 33 (177)
+||+|+|+|||||||+.+.|.
T Consensus 1 m~I~i~G~pGSGKsT~a~~La 21 (182)
T d1zina1 1 MNLVLMGLPGAGKGTQAEKIV 21 (182)
T ss_dssp CEEEEECSTTSSHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 479999999999999999986
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Probab=97.92 E-value=3.3e-06 Score=57.46 Aligned_cols=32 Identities=16% Similarity=0.280 Sum_probs=29.1
Q ss_pred eeecccccceeEEEEEcCCCCCHHHHHHHHhc
Q 030429 3 LHISLFFKQEMELSLIGLQNAGKTSLVNTIAT 34 (177)
Q Consensus 3 ~~~~~~~~~~~~i~i~G~~~~GKSsli~~l~~ 34 (177)
.+.++..+..-.++++|+.|||||||++.+.+
T Consensus 19 ~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g 50 (242)
T d1mv5a_ 19 RDISFEAQPNSIIAFAGPSGGGKSTIFSLLER 50 (242)
T ss_dssp EEEEEEECTTEEEEEECCTTSSHHHHHHHHTT
T ss_pred eeeEEEEcCCCEEEEECCCCCCHHHHHHHHHH
Confidence 56788889999999999999999999999973
|
| >d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]
Probab=97.92 E-value=3.4e-06 Score=55.30 Aligned_cols=26 Identities=15% Similarity=0.348 Sum_probs=23.1
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHhc
Q 030429 9 FKQEMELSLIGLQNAGKTSLVNTIAT 34 (177)
Q Consensus 9 ~~~~~~i~i~G~~~~GKSsli~~l~~ 34 (177)
..+.++|+++|+|||||||+...|..
T Consensus 3 ~~r~mrIiliG~PGSGKtT~a~~La~ 28 (189)
T d2ak3a1 3 SARLLRAAIMGAPGSGKGTVSSRITK 28 (189)
T ss_dssp SSCCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcceeEEEECCCCCCHHHHHHHHHH
Confidence 35678999999999999999999983
|
| >d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus globisporus [TaxId: 1459]
Probab=97.89 E-value=3.5e-06 Score=54.76 Aligned_cols=21 Identities=38% Similarity=0.659 Sum_probs=19.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHh
Q 030429 13 MELSLIGLQNAGKTSLVNTIA 33 (177)
Q Consensus 13 ~~i~i~G~~~~GKSsli~~l~ 33 (177)
++|+|+|+|||||||+.+.|.
T Consensus 1 M~I~i~G~pGSGKsT~a~~La 21 (182)
T d1s3ga1 1 MNIVLMGLPGAGKGTQADRIV 21 (182)
T ss_dssp CEEEEECSTTSSHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 479999999999999999998
|
| >d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.89 E-value=3.5e-06 Score=54.63 Aligned_cols=21 Identities=33% Similarity=0.476 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHh
Q 030429 13 MELSLIGLQNAGKTSLVNTIA 33 (177)
Q Consensus 13 ~~i~i~G~~~~GKSsli~~l~ 33 (177)
+||+++|+|||||||+.+.|.
T Consensus 1 m~I~i~G~pGsGKsT~a~~La 21 (181)
T d2cdna1 1 MRVLLLGPPGAGKGTQAVKLA 21 (181)
T ss_dssp CEEEEECCTTSSHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 589999999999999999997
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=97.88 E-value=4.1e-06 Score=57.39 Aligned_cols=32 Identities=22% Similarity=0.400 Sum_probs=28.8
Q ss_pred eeecccccceeEEEEEcCCCCCHHHHHHHHhc
Q 030429 3 LHISLFFKQEMELSLIGLQNAGKTSLVNTIAT 34 (177)
Q Consensus 3 ~~~~~~~~~~~~i~i~G~~~~GKSsli~~l~~ 34 (177)
...++..+..-.++|+|+.|||||||++.+.+
T Consensus 32 ~~isl~i~~Ge~iaivG~sGsGKSTLl~ll~g 63 (253)
T d3b60a1 32 RNINLKIPAGKTVALVGRSGSGKSTIASLITR 63 (253)
T ss_dssp EEEEEEECTTCEEEEEECTTSSHHHHHHHHTT
T ss_pred eceEEEEcCCCEEEEECCCCChHHHHHHHHhc
Confidence 46788888999999999999999999999973
|
| >d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Polynucleotide kinase, kinase domain species: Bacteriophage T4 [TaxId: 10665]
Probab=97.88 E-value=3.7e-06 Score=52.78 Aligned_cols=20 Identities=20% Similarity=0.385 Sum_probs=18.2
Q ss_pred EEEEcCCCCCHHHHHHHHhc
Q 030429 15 LSLIGLQNAGKTSLVNTIAT 34 (177)
Q Consensus 15 i~i~G~~~~GKSsli~~l~~ 34 (177)
|+++|+|||||||+++++..
T Consensus 5 Iii~G~pGsGKTTla~~L~~ 24 (152)
T d1ly1a_ 5 ILTIGCPGSGKSTWAREFIA 24 (152)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 78899999999999999863
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.87 E-value=4.4e-06 Score=57.17 Aligned_cols=32 Identities=13% Similarity=0.319 Sum_probs=28.9
Q ss_pred eeecccccceeEEEEEcCCCCCHHHHHHHHhc
Q 030429 3 LHISLFFKQEMELSLIGLQNAGKTSLVNTIAT 34 (177)
Q Consensus 3 ~~~~~~~~~~~~i~i~G~~~~GKSsli~~l~~ 34 (177)
...++..++.-.++++|+.|||||||++.+.+
T Consensus 31 ~~isl~i~~Ge~vaivG~sGsGKSTLl~li~g 62 (251)
T d1jj7a_ 31 QGLTFTLRPGEVTALVGPNGSGKSTVAALLQN 62 (251)
T ss_dssp EEEEEEECTTCEEEEECSTTSSHHHHHHHHTT
T ss_pred eceEEEEcCCCEEEEECCCCCcHHHHHHHHhc
Confidence 56788889999999999999999999999973
|
| >d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.86 E-value=4.4e-06 Score=54.18 Aligned_cols=22 Identities=27% Similarity=0.466 Sum_probs=20.7
Q ss_pred eeEEEEEcCCCCCHHHHHHHHh
Q 030429 12 EMELSLIGLQNAGKTSLVNTIA 33 (177)
Q Consensus 12 ~~~i~i~G~~~~GKSsli~~l~ 33 (177)
.++|+++|+|||||||+.+.|.
T Consensus 2 ~mrIvl~G~pGSGKtT~a~~La 23 (180)
T d1akya1 2 SIRMVLIGPPGAGKGTQAPNLQ 23 (180)
T ss_dssp CCEEEEECCTTSSHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHH
Confidence 5789999999999999999997
|
| >d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Bacillus stearothermophilus [TaxId: 1422]
Probab=97.86 E-value=6.5e-05 Score=47.69 Aligned_cols=19 Identities=26% Similarity=0.588 Sum_probs=17.6
Q ss_pred EEEEcCCCCCHHHHHHHHh
Q 030429 15 LSLIGLQNAGKTSLVNTIA 33 (177)
Q Consensus 15 i~i~G~~~~GKSsli~~l~ 33 (177)
+.|+|.+|||||||++++.
T Consensus 4 i~I~G~~gSGKTTli~~l~ 22 (165)
T d1xjca_ 4 WQVVGYKHSGKTTLMEKWV 22 (165)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEEeCCCCCHHHHHHHHH
Confidence 4699999999999999997
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=97.85 E-value=4.9e-06 Score=56.05 Aligned_cols=32 Identities=25% Similarity=0.450 Sum_probs=28.1
Q ss_pred eeecccccceeEEEEEcCCCCCHHHHHHHHhc
Q 030429 3 LHISLFFKQEMELSLIGLQNAGKTSLVNTIAT 34 (177)
Q Consensus 3 ~~~~~~~~~~~~i~i~G~~~~GKSsli~~l~~ 34 (177)
...++..++.-.++++|+.|||||||++.+.+
T Consensus 22 ~~isl~i~~Ge~~~iiG~sGsGKSTLl~~i~g 53 (230)
T d1l2ta_ 22 KNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGC 53 (230)
T ss_dssp EEEEEEECTTCEEEEECSTTSSHHHHHHHHTT
T ss_pred eceEEEEcCCCEEEEECCCCCCcchhhHhccC
Confidence 45678888888999999999999999998863
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=97.85 E-value=5.4e-06 Score=55.87 Aligned_cols=32 Identities=25% Similarity=0.358 Sum_probs=28.6
Q ss_pred eeecccccceeEEEEEcCCCCCHHHHHHHHhc
Q 030429 3 LHISLFFKQEMELSLIGLQNAGKTSLVNTIAT 34 (177)
Q Consensus 3 ~~~~~~~~~~~~i~i~G~~~~GKSsli~~l~~ 34 (177)
...++..++.--++++|+.|||||||++.+.+
T Consensus 17 ~~isl~i~~Gei~~liGpsGsGKSTLl~~i~G 48 (232)
T d2awna2 17 KDINLDIHEGEFVVFVGPSGCGKSTLLRMIAG 48 (232)
T ss_dssp EEEEEEECTTCEEEEECCTTSSHHHHHHHHHT
T ss_pred eeeEEEEcCCCEEEEECCCCChHHHHHHHHhc
Confidence 45788888889999999999999999999974
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.84 E-value=5.2e-06 Score=57.74 Aligned_cols=32 Identities=31% Similarity=0.372 Sum_probs=29.2
Q ss_pred eeecccccceeEEEEEcCCCCCHHHHHHHHhc
Q 030429 3 LHISLFFKQEMELSLIGLQNAGKTSLVNTIAT 34 (177)
Q Consensus 3 ~~~~~~~~~~~~i~i~G~~~~GKSsli~~l~~ 34 (177)
.+.++..++.-.++|+|+.|||||||++.+.+
T Consensus 53 ~~isl~i~~Ge~vaivG~nGsGKSTLl~~i~G 84 (281)
T d1r0wa_ 53 KNINLNIEKGEMLAITGSTGSGKTSLLMLILG 84 (281)
T ss_dssp EEEEEEECTTCEEEEEESTTSSHHHHHHHHHT
T ss_pred eCeEEEEcCCCEEEEECCCCChHHHHHHHHhC
Confidence 56788889999999999999999999999984
|
| >d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Escherichia coli [TaxId: 562]
Probab=97.84 E-value=4.8e-06 Score=53.89 Aligned_cols=21 Identities=33% Similarity=0.452 Sum_probs=19.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHh
Q 030429 13 MELSLIGLQNAGKTSLVNTIA 33 (177)
Q Consensus 13 ~~i~i~G~~~~GKSsli~~l~ 33 (177)
+||+++|+|||||||..+.|.
T Consensus 1 m~I~i~G~pGSGKsT~~~~La 21 (179)
T d1e4va1 1 MRIILLGAPVAGKGTQAQFIM 21 (179)
T ss_dssp CEEEEEESTTSSHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 589999999999999999997
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Probab=97.83 E-value=4.5e-06 Score=55.17 Aligned_cols=32 Identities=28% Similarity=0.421 Sum_probs=28.3
Q ss_pred eeecccccceeEEEEEcCCCCCHHHHHHHHhc
Q 030429 3 LHISLFFKQEMELSLIGLQNAGKTSLVNTIAT 34 (177)
Q Consensus 3 ~~~~~~~~~~~~i~i~G~~~~GKSsli~~l~~ 34 (177)
.+.++..++.-.++++|+.|||||||++.+++
T Consensus 18 ~~is~~i~~Gei~~l~G~NGsGKSTLl~~i~g 49 (200)
T d1sgwa_ 18 ERITMTIEKGNVVNFHGPNGIGKTTLLKTIST 49 (200)
T ss_dssp EEEEEEEETTCCEEEECCTTSSHHHHHHHHTT
T ss_pred eceEEEEcCCCEEEEECCCCChHHHHHHHHhc
Confidence 45677888888999999999999999999974
|
| >d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein BH3686 species: Bacillus halodurans [TaxId: 86665]
Probab=97.78 E-value=6.1e-06 Score=52.64 Aligned_cols=20 Identities=20% Similarity=0.326 Sum_probs=18.5
Q ss_pred EEEEEcCCCCCHHHHHHHHh
Q 030429 14 ELSLIGLQNAGKTSLVNTIA 33 (177)
Q Consensus 14 ~i~i~G~~~~GKSsli~~l~ 33 (177)
-|++.|+|||||||+.++|.
T Consensus 4 lI~i~G~~GsGKTTva~~L~ 23 (176)
T d2bdta1 4 LYIITGPAGVGKSTTCKRLA 23 (176)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 38899999999999999997
|
| >d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.78 E-value=1.6e-05 Score=55.04 Aligned_cols=56 Identities=27% Similarity=0.272 Sum_probs=38.8
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCC--C---CCCCccceeEEEEE---eCCEEEEEEecCCc
Q 030429 12 EMELSLIGLQNAGKTSLVNTIATGGYS--E---DMIPTVGFNMRKVT---KGNVTIKLWDLGGQ 67 (177)
Q Consensus 12 ~~~i~i~G~~~~GKSsli~~l~~~~~~--~---~~~~t~~~~~~~~~---~~~~~~~~~D~~g~ 67 (177)
-.-|.++|+.++|||+|+|.+++.... . ....|.|+-..... ..+..+.++||.|.
T Consensus 32 v~vvsi~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~Giw~~~~~~~~~~~~~~~~lDteG~ 95 (277)
T d1f5na2 32 MVVVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEGL 95 (277)
T ss_dssp EEEEEEEEBTTSSHHHHHHHHTTCSSCSCCCCSSSCCCCSEEEEEEECSSSTTCEEEEEEECCB
T ss_pred EEEEEEECCCCCCHHHHHHHHcCCCCCCccCCCCCCCCCceEEEEeeccCCCCceEEEEecccc
Confidence 457899999999999999999975531 1 12245555443322 34567888999994
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Probab=97.76 E-value=9.2e-06 Score=54.95 Aligned_cols=32 Identities=31% Similarity=0.376 Sum_probs=28.2
Q ss_pred eeecccccceeEEEEEcCCCCCHHHHHHHHhc
Q 030429 3 LHISLFFKQEMELSLIGLQNAGKTSLVNTIAT 34 (177)
Q Consensus 3 ~~~~~~~~~~~~i~i~G~~~~GKSsli~~l~~ 34 (177)
...++..++.-.++++|+.|||||||++.+.+
T Consensus 23 ~~vsl~v~~Ge~~~liGpsGaGKSTLl~~i~G 54 (239)
T d1v43a3 23 NKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAG 54 (239)
T ss_dssp EEEEEEECTTCEEEEECCTTSSHHHHHHHHHT
T ss_pred cceeEEECCCCEEEEECCCCChHHHHHHHHHc
Confidence 35678888888999999999999999999984
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Probab=97.75 E-value=9e-06 Score=55.06 Aligned_cols=32 Identities=25% Similarity=0.397 Sum_probs=28.2
Q ss_pred eeecccccceeEEEEEcCCCCCHHHHHHHHhc
Q 030429 3 LHISLFFKQEMELSLIGLQNAGKTSLVNTIAT 34 (177)
Q Consensus 3 ~~~~~~~~~~~~i~i~G~~~~GKSsli~~l~~ 34 (177)
...++..++.--++++|+.|||||||++.+.+
T Consensus 22 ~~vsl~i~~Ge~~~iiG~sGsGKSTLl~~i~G 53 (240)
T d3dhwc1 22 NNVSLHVPAGQIYGVIGASGAGKSTLIRCVNL 53 (240)
T ss_dssp EEEEEEECSSCEEEEEESTTSSHHHHHHHHTT
T ss_pred eceeEEEcCCCEEEEECCCCCCHHHHHHHHcC
Confidence 35678888888999999999999999999974
|
| >d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.75 E-value=9.1e-06 Score=53.16 Aligned_cols=22 Identities=23% Similarity=0.320 Sum_probs=20.3
Q ss_pred eeEEEEEcCCCCCHHHHHHHHh
Q 030429 12 EMELSLIGLQNAGKTSLVNTIA 33 (177)
Q Consensus 12 ~~~i~i~G~~~~GKSsli~~l~ 33 (177)
++.|+|+|+|||||||....+.
T Consensus 1 p~iI~i~GppGSGKsT~a~~La 22 (194)
T d1teva_ 1 PLVVFVLGGPGAGKGTQCARIV 22 (194)
T ss_dssp CEEEEEECCTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 4689999999999999999997
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Probab=97.75 E-value=9.2e-06 Score=55.00 Aligned_cols=32 Identities=31% Similarity=0.345 Sum_probs=28.5
Q ss_pred eeecccccceeEEEEEcCCCCCHHHHHHHHhc
Q 030429 3 LHISLFFKQEMELSLIGLQNAGKTSLVNTIAT 34 (177)
Q Consensus 3 ~~~~~~~~~~~~i~i~G~~~~GKSsli~~l~~ 34 (177)
...++..++.-.++++|+.|||||||++.+.+
T Consensus 20 ~~vsl~i~~Ge~~~liG~sGaGKSTll~~i~g 51 (240)
T d1g2912 20 REMSLEVKDGEFMILLGPSGCGKTTTLRMIAG 51 (240)
T ss_dssp EEEEEEEETTCEEEEECSTTSSHHHHHHHHHT
T ss_pred cceeeEEcCCCEEEEECCCCChHHHHHHHHhc
Confidence 45778888888999999999999999999984
|
| >d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Cancer-related NTPase, C1orf57 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.74 E-value=7.1e-06 Score=52.84 Aligned_cols=20 Identities=30% Similarity=0.499 Sum_probs=18.7
Q ss_pred EEEEEcCCCCCHHHHHHHHh
Q 030429 14 ELSLIGLQNAGKTSLVNTIA 33 (177)
Q Consensus 14 ~i~i~G~~~~GKSsli~~l~ 33 (177)
+|.|+|++|+|||||+..+.
T Consensus 3 ~v~ItG~~GtGKTtl~~~i~ 22 (189)
T d2i3ba1 3 HVFLTGPPGVGKTTLIHKAS 22 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHH
Confidence 58999999999999999997
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Probab=97.74 E-value=5e-06 Score=56.95 Aligned_cols=32 Identities=25% Similarity=0.524 Sum_probs=28.7
Q ss_pred eeecccccceeEEEEEcCCCCCHHHHHHHHhc
Q 030429 3 LHISLFFKQEMELSLIGLQNAGKTSLVNTIAT 34 (177)
Q Consensus 3 ~~~~~~~~~~~~i~i~G~~~~GKSsli~~l~~ 34 (177)
.+.++..+..-+++++|+.|||||||++.+.+
T Consensus 35 ~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g 66 (255)
T d2hyda1 35 KDINLSIEKGETVAFVGMSGGGKSTLINLIPR 66 (255)
T ss_dssp EEEEEEECTTCEEEEECSTTSSHHHHHTTTTT
T ss_pred eceEEEEcCCCEEEEECCCCCcHHHHHHHHHh
Confidence 56788889999999999999999999998873
|
| >d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Escherichia coli [TaxId: 562]
Probab=97.74 E-value=7.4e-06 Score=51.72 Aligned_cols=20 Identities=30% Similarity=0.532 Sum_probs=18.9
Q ss_pred EEEEEcCCCCCHHHHHHHHh
Q 030429 14 ELSLIGLQNAGKTSLVNTIA 33 (177)
Q Consensus 14 ~i~i~G~~~~GKSsli~~l~ 33 (177)
+|+++|++||||||+.+.|.
T Consensus 4 ~I~l~G~~GsGKSTvak~La 23 (169)
T d1kaga_ 4 NIFLVGPMGAGKSTIGRQLA 23 (169)
T ss_dssp CEEEECCTTSCHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHH
Confidence 68999999999999999997
|
| >d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein rbstp0775 species: Bacillus stearothermophilus [TaxId: 1422]
Probab=97.74 E-value=1.1e-05 Score=52.69 Aligned_cols=28 Identities=29% Similarity=0.471 Sum_probs=24.2
Q ss_pred cccccceeEEEEEcCCCCCHHHHHHHHh
Q 030429 6 SLFFKQEMELSLIGLQNAGKTSLVNTIA 33 (177)
Q Consensus 6 ~~~~~~~~~i~i~G~~~~GKSsli~~l~ 33 (177)
++....++-|+|.|++|||||||.+.|.
T Consensus 16 ~~~~~~~~iIgI~G~~GSGKSTla~~L~ 43 (198)
T d1rz3a_ 16 AIKTAGRLVLGIDGLSRSGKTTLANQLS 43 (198)
T ss_dssp TSCCSSSEEEEEEECTTSSHHHHHHHHH
T ss_pred hccCCCCEEEEEECCCCCCHHHHHHHHH
Confidence 3456677889999999999999999997
|
| >d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=97.72 E-value=9.9e-06 Score=53.01 Aligned_cols=27 Identities=30% Similarity=0.374 Sum_probs=22.7
Q ss_pred cccceeEEEEEcCCCCCHHHHHHHHhc
Q 030429 8 FFKQEMELSLIGLQNAGKTSLVNTIAT 34 (177)
Q Consensus 8 ~~~~~~~i~i~G~~~~GKSsli~~l~~ 34 (177)
..+..-+++++|+||+|||+++..+..
T Consensus 39 ~r~~k~n~lLvG~pGVGKTalv~~LA~ 65 (195)
T d1jbka_ 39 QRRTKNNPVLIGEPGVGKTAIVEGLAQ 65 (195)
T ss_dssp TSSSSCEEEEECCTTSCHHHHHHHHHH
T ss_pred hccCCCCeEEEecCCcccHHHHHHHHH
Confidence 344566899999999999999998873
|
| >d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.72 E-value=1.1e-05 Score=51.90 Aligned_cols=26 Identities=15% Similarity=0.308 Sum_probs=22.6
Q ss_pred cccceeEEEEEcCCCCCHHHHHHHHh
Q 030429 8 FFKQEMELSLIGLQNAGKTSLVNTIA 33 (177)
Q Consensus 8 ~~~~~~~i~i~G~~~~GKSsli~~l~ 33 (177)
..+++.=|+++|.|||||||+.+++.
T Consensus 10 ~~~~p~liil~G~pGsGKST~a~~l~ 35 (172)
T d1yj5a2 10 LSPNPEVVVAVGFPGAGKSTFIQEHL 35 (172)
T ss_dssp SCSSCCEEEEECCTTSSHHHHHHHHT
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHH
Confidence 34567789999999999999999996
|
| >d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ATP sulfurylase C-terminal domain domain: ATP sulfurylase C-terminal domain species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=97.70 E-value=1.2e-05 Score=51.46 Aligned_cols=24 Identities=25% Similarity=0.483 Sum_probs=21.3
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHh
Q 030429 10 KQEMELSLIGLQNAGKTSLVNTIA 33 (177)
Q Consensus 10 ~~~~~i~i~G~~~~GKSsli~~l~ 33 (177)
++.+-|.++|.+||||||+.+.|.
T Consensus 4 ~~g~~I~l~G~~GsGKTTia~~La 27 (183)
T d1m8pa3 4 TQGFTIFLTGYMNSGKDAIARALQ 27 (183)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHH
Confidence 456889999999999999998886
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Probab=97.70 E-value=7.3e-06 Score=55.37 Aligned_cols=32 Identities=28% Similarity=0.303 Sum_probs=28.9
Q ss_pred eeecccccceeEEEEEcCCCCCHHHHHHHHhc
Q 030429 3 LHISLFFKQEMELSLIGLQNAGKTSLVNTIAT 34 (177)
Q Consensus 3 ~~~~~~~~~~~~i~i~G~~~~GKSsli~~l~~ 34 (177)
.+.++..+..--++++|+.|+|||||++.+.+
T Consensus 16 ~~isl~I~~Gei~~iiG~nGaGKSTLl~~l~G 47 (231)
T d1l7vc_ 16 GPLSGEVRAGEILHLVGPNGAGKSTLLARMAG 47 (231)
T ss_dssp CSEEEEEETTCEEECBCCTTSSHHHHHHHHHT
T ss_pred cCEEEEEcCCCEEEEECCCCCcHHHHHHHHhC
Confidence 45788888999999999999999999999985
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Probab=97.69 E-value=1.2e-05 Score=54.64 Aligned_cols=32 Identities=34% Similarity=0.413 Sum_probs=28.7
Q ss_pred eeecccccceeEEEEEcCCCCCHHHHHHHHhc
Q 030429 3 LHISLFFKQEMELSLIGLQNAGKTSLVNTIAT 34 (177)
Q Consensus 3 ~~~~~~~~~~~~i~i~G~~~~GKSsli~~l~~ 34 (177)
...++..++.--++++|+.|+|||||++.+.+
T Consensus 23 ~~vs~~i~~Gei~~liGpnGaGKSTl~~~i~G 54 (240)
T d1ji0a_ 23 KGIDLKVPRGQIVTLIGANGAGKTTTLSAIAG 54 (240)
T ss_dssp EEEEEEEETTCEEEEECSTTSSHHHHHHHHTT
T ss_pred eeeeEEECCCCEEEEECCCCCcHHHHHHHHhC
Confidence 46778888888999999999999999999984
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Probab=97.69 E-value=7.8e-06 Score=54.95 Aligned_cols=33 Identities=27% Similarity=0.267 Sum_probs=28.9
Q ss_pred eeecccccceeEEEEEcCCCCCHHHHHHHHhcC
Q 030429 3 LHISLFFKQEMELSLIGLQNAGKTSLVNTIATG 35 (177)
Q Consensus 3 ~~~~~~~~~~~~i~i~G~~~~GKSsli~~l~~~ 35 (177)
...++..++.--++++|+.|||||||++.+.+-
T Consensus 17 ~~vs~~i~~Ge~~~liGpsGaGKSTll~~l~Gl 49 (229)
T d3d31a2 17 DNLSLKVESGEYFVILGPTGAGKTLFLELIAGF 49 (229)
T ss_dssp EEEEEEECTTCEEEEECCCTHHHHHHHHHHHTS
T ss_pred eeeEEEECCCCEEEEECCCCCcHHHHHHHHhcC
Confidence 356788888889999999999999999999843
|
| >d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.67 E-value=1e-05 Score=51.62 Aligned_cols=20 Identities=30% Similarity=0.594 Sum_probs=18.5
Q ss_pred EEEEEcCCCCCHHHHHHHHh
Q 030429 14 ELSLIGLQNAGKTSLVNTIA 33 (177)
Q Consensus 14 ~i~i~G~~~~GKSsli~~l~ 33 (177)
+|+++|.+||||||+.+.+.
T Consensus 3 ~IvliG~~G~GKSTig~~La 22 (165)
T d2iyva1 3 KAVLVGLPGSGKSTIGRRLA 22 (165)
T ss_dssp SEEEECSTTSSHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHH
Confidence 68999999999999999886
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Probab=97.67 E-value=1.5e-05 Score=54.05 Aligned_cols=33 Identities=33% Similarity=0.351 Sum_probs=28.9
Q ss_pred eeecccccceeEEEEEcCCCCCHHHHHHHHhcC
Q 030429 3 LHISLFFKQEMELSLIGLQNAGKTSLVNTIATG 35 (177)
Q Consensus 3 ~~~~~~~~~~~~i~i~G~~~~GKSsli~~l~~~ 35 (177)
...++..+..--++++|+.|+|||||++.+.+-
T Consensus 19 ~~vs~~v~~Gei~glvG~nGaGKSTLl~~l~G~ 51 (238)
T d1vpla_ 19 KGISFEIEEGEIFGLIGPNGAGKTTTLRIISTL 51 (238)
T ss_dssp EEEEEEECTTCEEEEECCTTSSHHHHHHHHTTS
T ss_pred ccceeEEcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 456788888889999999999999999999843
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Probab=97.66 E-value=1.5e-05 Score=54.65 Aligned_cols=32 Identities=25% Similarity=0.351 Sum_probs=28.6
Q ss_pred eeecccccceeEEEEEcCCCCCHHHHHHHHhc
Q 030429 3 LHISLFFKQEMELSLIGLQNAGKTSLVNTIAT 34 (177)
Q Consensus 3 ~~~~~~~~~~~~i~i~G~~~~GKSsli~~l~~ 34 (177)
...++..++.-.++++|+.|||||||++.+.+
T Consensus 19 ~~vs~~i~~GEi~~iiG~sGsGKSTLl~~i~G 50 (258)
T d1b0ua_ 19 KGVSLQARAGDVISIIGSSGSGKSTFLRCINF 50 (258)
T ss_dssp EEEEEEECTTCEEEEECCTTSSHHHHHHHHTT
T ss_pred cceeeEEcCCCEEEEECCCCCcHHHHHHHHHc
Confidence 45778888899999999999999999999974
|
| >d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=97.64 E-value=2.1e-05 Score=53.62 Aligned_cols=23 Identities=35% Similarity=0.436 Sum_probs=20.5
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhc
Q 030429 12 EMELSLIGLQNAGKTSLVNTIAT 34 (177)
Q Consensus 12 ~~~i~i~G~~~~GKSsli~~l~~ 34 (177)
...|++.|+||||||++++.+.+
T Consensus 40 ~~~vLL~GppGtGKT~la~alA~ 62 (246)
T d1d2na_ 40 LVSVLLEGPPHSGKTALAAKIAE 62 (246)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEEECcCCCCHHHHHHHHhh
Confidence 35699999999999999999973
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=97.63 E-value=7.5e-06 Score=55.46 Aligned_cols=32 Identities=22% Similarity=0.408 Sum_probs=28.7
Q ss_pred eeecccccceeEEEEEcCCCCCHHHHHHHHhc
Q 030429 3 LHISLFFKQEMELSLIGLQNAGKTSLVNTIAT 34 (177)
Q Consensus 3 ~~~~~~~~~~~~i~i~G~~~~GKSsli~~l~~ 34 (177)
...++..++.-.++++|+.|||||||++.+.+
T Consensus 22 ~~vsl~i~~Ge~~~iiG~sGsGKSTll~~i~g 53 (242)
T d1oxxk2 22 DNVNINIENGERFGILGPSGAGKTTFMRIIAG 53 (242)
T ss_dssp EEEEEEECTTCEEEEECSCHHHHHHHHHHHHT
T ss_pred eceEEEECCCCEEEEECCCCCcHHHHHHHHHc
Confidence 46778888889999999999999999999984
|
| >d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric traffic ATPase, HP0525 species: Helicobacter pylori [TaxId: 210]
Probab=97.62 E-value=2e-05 Score=55.78 Aligned_cols=25 Identities=20% Similarity=0.311 Sum_probs=21.7
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhc
Q 030429 10 KQEMELSLIGLQNAGKTSLVNTIAT 34 (177)
Q Consensus 10 ~~~~~i~i~G~~~~GKSsli~~l~~ 34 (177)
+...+|+|.|++|||||||++.++.
T Consensus 164 ~~~~nili~G~tgSGKTT~l~al~~ 188 (323)
T d1g6oa_ 164 AIGKNVIVCGGTGSGKTTYIKSIME 188 (323)
T ss_dssp HHTCCEEEEESTTSSHHHHHHHHGG
T ss_pred HhCCCEEEEeeccccchHHHHHHhh
Confidence 3445799999999999999999984
|
| >d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Campylobacter jejuni [TaxId: 197]
Probab=97.61 E-value=1.5e-05 Score=50.68 Aligned_cols=20 Identities=30% Similarity=0.680 Sum_probs=18.6
Q ss_pred EEEEEcCCCCCHHHHHHHHh
Q 030429 14 ELSLIGLQNAGKTSLVNTIA 33 (177)
Q Consensus 14 ~i~i~G~~~~GKSsli~~l~ 33 (177)
+|+++|++||||||+.+.+.
T Consensus 2 ~I~liG~~GsGKsTi~k~La 21 (161)
T d1viaa_ 2 NIVFIGFMGSGKSTLARALA 21 (161)
T ss_dssp CEEEECCTTSCHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHH
Confidence 58999999999999999996
|
| >d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=97.60 E-value=1.7e-05 Score=51.13 Aligned_cols=20 Identities=15% Similarity=0.240 Sum_probs=18.0
Q ss_pred EEEEEcCCCCCHHHHHHHHh
Q 030429 14 ELSLIGLQNAGKTSLVNTIA 33 (177)
Q Consensus 14 ~i~i~G~~~~GKSsli~~l~ 33 (177)
-|+|.|++||||||+++.|.
T Consensus 3 iI~i~G~~GsGKsT~~~~L~ 22 (190)
T d1khta_ 3 VVVVTGVPGVGSTTSSQLAM 22 (190)
T ss_dssp EEEEECCTTSCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 47889999999999999886
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=97.59 E-value=2.3e-05 Score=52.90 Aligned_cols=29 Identities=24% Similarity=0.393 Sum_probs=22.3
Q ss_pred ecccccceeEEEEEcCCCCCHHHHHHHHhc
Q 030429 5 ISLFFKQEMELSLIGLQNAGKTSLVNTIAT 34 (177)
Q Consensus 5 ~~~~~~~~~~i~i~G~~~~GKSsli~~l~~ 34 (177)
.++...+. -++++|+.|||||||++.+.+
T Consensus 18 vs~~~~~e-~~~liGpnGaGKSTll~~i~G 46 (240)
T d2onka1 18 VDFEMGRD-YCVLLGPTGAGKSVFLELIAG 46 (240)
T ss_dssp EEEEECSS-EEEEECCTTSSHHHHHHHHHT
T ss_pred EEEEeCCE-EEEEECCCCChHHHHHHHHHc
Confidence 34444433 567999999999999999984
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=97.58 E-value=2.1e-05 Score=53.80 Aligned_cols=33 Identities=24% Similarity=0.289 Sum_probs=28.6
Q ss_pred eeecccccceeEEEEEcCCCCCHHHHHHHHhcC
Q 030429 3 LHISLFFKQEMELSLIGLQNAGKTSLVNTIATG 35 (177)
Q Consensus 3 ~~~~~~~~~~~~i~i~G~~~~GKSsli~~l~~~ 35 (177)
...++..++.--++++|+.|||||||++.+.+-
T Consensus 21 ~~vs~~v~~Gei~~liG~nGaGKSTLl~~i~Gl 53 (254)
T d1g6ha_ 21 DGVSISVNKGDVTLIIGPNGSGKSTLINVITGF 53 (254)
T ss_dssp EEECCEEETTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred cceEEEECCCCEEEEECCCCCcHHHHHHHHHCC
Confidence 456778888888999999999999999999843
|
| >d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Uridylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.58 E-value=2.5e-05 Score=51.14 Aligned_cols=26 Identities=19% Similarity=0.210 Sum_probs=22.0
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHhc
Q 030429 9 FKQEMELSLIGLQNAGKTSLVNTIAT 34 (177)
Q Consensus 9 ~~~~~~i~i~G~~~~GKSsli~~l~~ 34 (177)
+++.-.|+++|+|||||||+...|..
T Consensus 5 ~~~~~iI~i~GppGSGKsT~a~~La~ 30 (196)
T d1ukza_ 5 PDQVSVIFVLGGPGAGKGTQCEKLVK 30 (196)
T ss_dssp TTTCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHH
Confidence 44555789999999999999999973
|
| >d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Gluconate kinase domain: Gluconate kinase species: Escherichia coli [TaxId: 562]
Probab=97.57 E-value=2e-05 Score=50.23 Aligned_cols=22 Identities=23% Similarity=0.484 Sum_probs=18.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHhc
Q 030429 13 MELSLIGLQNAGKTSLVNTIAT 34 (177)
Q Consensus 13 ~~i~i~G~~~~GKSsli~~l~~ 34 (177)
--++++|++||||||+.+.|..
T Consensus 7 ~iivl~G~~GsGKsT~a~~La~ 28 (171)
T d1knqa_ 7 HIYVLMGVSGSGKSAVASEVAH 28 (171)
T ss_dssp EEEEEECSTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3467899999999999999973
|
| >d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein Atu3015 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=97.54 E-value=2.3e-05 Score=50.05 Aligned_cols=20 Identities=30% Similarity=0.551 Sum_probs=18.2
Q ss_pred EEEEcCCCCCHHHHHHHHhc
Q 030429 15 LSLIGLQNAGKTSLVNTIAT 34 (177)
Q Consensus 15 i~i~G~~~~GKSsli~~l~~ 34 (177)
|++.|++||||||+.+.+..
T Consensus 7 I~l~G~~GsGKSTia~~La~ 26 (176)
T d1zp6a1 7 LLLSGHPGSGKSTIAEALAN 26 (176)
T ss_dssp EEEEECTTSCHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 78999999999999999973
|
| >d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=97.53 E-value=2.5e-05 Score=51.12 Aligned_cols=24 Identities=17% Similarity=0.275 Sum_probs=20.6
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhc
Q 030429 11 QEMELSLIGLQNAGKTSLVNTIAT 34 (177)
Q Consensus 11 ~~~~i~i~G~~~~GKSsli~~l~~ 34 (177)
+.--|+++|+|||||||+..+|..
T Consensus 7 ~~~iI~l~G~pGSGKsT~a~~La~ 30 (194)
T d3adka_ 7 KSKIIFVVGGPGSGKGTQCEKIVQ 30 (194)
T ss_dssp TSCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 345588999999999999999973
|
| >d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.52 E-value=2.6e-05 Score=50.74 Aligned_cols=21 Identities=19% Similarity=0.447 Sum_probs=19.0
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q 030429 15 LSLIGLQNAGKTSLVNTIATG 35 (177)
Q Consensus 15 i~i~G~~~~GKSsli~~l~~~ 35 (177)
|+|+|++||||+||+++|+..
T Consensus 4 Ivl~GpsG~GK~tl~~~L~~~ 24 (186)
T d1gkya_ 4 IVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 789999999999999999743
|
| >d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.51 E-value=2.7e-05 Score=50.42 Aligned_cols=21 Identities=24% Similarity=0.403 Sum_probs=18.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 030429 14 ELSLIGLQNAGKTSLVNTIAT 34 (177)
Q Consensus 14 ~i~i~G~~~~GKSsli~~l~~ 34 (177)
=|+++||+|||||||++.|..
T Consensus 4 iivl~GpsG~GK~tl~~~L~~ 24 (182)
T d1znwa1 4 VVVLSGPSAVGKSTVVRCLRE 24 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 378999999999999999974
|
| >d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Chloramphenicol phosphotransferase domain: Chloramphenicol phosphotransferase species: Streptomyces venezuelae [TaxId: 54571]
Probab=97.50 E-value=2.8e-05 Score=49.58 Aligned_cols=21 Identities=29% Similarity=0.441 Sum_probs=18.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 030429 14 ELSLIGLQNAGKTSLVNTIAT 34 (177)
Q Consensus 14 ~i~i~G~~~~GKSsli~~l~~ 34 (177)
=|++.|++||||||+.+.|..
T Consensus 5 iI~l~G~~GsGKsTva~~L~~ 25 (178)
T d1qhxa_ 5 MIILNGGSSAGKSGIVRCLQS 25 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 367779999999999999974
|
| >d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit species: Streptococcus pyogenes [TaxId: 1314]
Probab=97.49 E-value=3.2e-05 Score=52.98 Aligned_cols=24 Identities=33% Similarity=0.340 Sum_probs=20.8
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhc
Q 030429 11 QEMELSLIGLQNAGKTSLVNTIAT 34 (177)
Q Consensus 11 ~~~~i~i~G~~~~GKSsli~~l~~ 34 (177)
.+.-|++.|+||||||||...+.+
T Consensus 31 ~P~~ilL~GpPGtGKT~la~~la~ 54 (273)
T d1gvnb_ 31 SPTAFLLGGQPGSGKTSLRSAIFE 54 (273)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 344599999999999999999974
|
| >d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Erwinia chrysanthemi [TaxId: 556]
Probab=97.46 E-value=3.5e-05 Score=49.30 Aligned_cols=20 Identities=20% Similarity=0.439 Sum_probs=18.1
Q ss_pred EEEEEcCCCCCHHHHHHHHh
Q 030429 14 ELSLIGLQNAGKTSLVNTIA 33 (177)
Q Consensus 14 ~i~i~G~~~~GKSsli~~l~ 33 (177)
.|+++|++||||||+.+.+.
T Consensus 4 ~Iil~G~~GsGKSTia~~LA 23 (170)
T d1e6ca_ 4 PIFMVGARGCGMTTVGRELA 23 (170)
T ss_dssp CEEEESCTTSSHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHH
Confidence 37889999999999999996
|
| >d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Uridine-cytidine kinase 2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.46 E-value=4e-05 Score=50.77 Aligned_cols=23 Identities=22% Similarity=0.369 Sum_probs=20.7
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHh
Q 030429 11 QEMELSLIGLQNAGKTSLVNTIA 33 (177)
Q Consensus 11 ~~~~i~i~G~~~~GKSsli~~l~ 33 (177)
+++-|+|.|++|||||||.+.|.
T Consensus 1 ~P~iIgI~G~~gSGKSTla~~L~ 23 (213)
T d1uj2a_ 1 EPFLIGVSGGTASGKSSVCAKIV 23 (213)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHH
Confidence 36789999999999999999886
|
| >d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.45 E-value=1.7e-05 Score=51.58 Aligned_cols=23 Identities=30% Similarity=0.450 Sum_probs=20.6
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHh
Q 030429 11 QEMELSLIGLQNAGKTSLVNTIA 33 (177)
Q Consensus 11 ~~~~i~i~G~~~~GKSsli~~l~ 33 (177)
+...|.++|.|||||||+.+.|.
T Consensus 18 ~g~vI~L~G~pGSGKTTiAk~La 40 (195)
T d1x6va3 18 RGCTVWLTGLSGAGKTTVSMALE 40 (195)
T ss_dssp CCEEEEEESSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHH
Confidence 45688899999999999999996
|
| >d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase-like domain of Cask species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.43 E-value=4e-05 Score=49.50 Aligned_cols=20 Identities=35% Similarity=0.629 Sum_probs=18.6
Q ss_pred EEEEcCCCCCHHHHHHHHhc
Q 030429 15 LSLIGLQNAGKTSLVNTIAT 34 (177)
Q Consensus 15 i~i~G~~~~GKSsli~~l~~ 34 (177)
|+|+||+||||+||+++|..
T Consensus 6 ivl~Gpsg~GK~tl~~~L~~ 25 (178)
T d1kgda_ 6 LVLLGAHGVGRRHIKNTLIT 25 (178)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 78999999999999999984
|
| >d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Thermus thermophilus [TaxId: 274]
Probab=97.42 E-value=0.00014 Score=52.58 Aligned_cols=25 Identities=32% Similarity=0.438 Sum_probs=20.9
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHh
Q 030429 9 FKQEMELSLIGLQNAGKTSLVNTIA 33 (177)
Q Consensus 9 ~~~~~~i~i~G~~~~GKSsli~~l~ 33 (177)
-+..-+++++|+||||||++++.|.
T Consensus 40 r~~k~n~llvG~~GvGKtaiv~~la 64 (387)
T d1qvra2 40 RRTKNNPVLIGEPGVGKTAIVEGLA 64 (387)
T ss_dssp CSSCCCCEEEECTTSCHHHHHHHHH
T ss_pred cCCCCCCeEECCCCCCHHHHHHHHH
Confidence 4556678999999999999987665
|
| >d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.42 E-value=4.1e-05 Score=49.97 Aligned_cols=20 Identities=30% Similarity=0.506 Sum_probs=18.3
Q ss_pred EEEEcCCCCCHHHHHHHHhc
Q 030429 15 LSLIGLQNAGKTSLVNTIAT 34 (177)
Q Consensus 15 i~i~G~~~~GKSsli~~l~~ 34 (177)
|+|+||+|||||||+++|..
T Consensus 3 Ivl~GPsGsGK~tl~~~L~~ 22 (190)
T d1lvga_ 3 VVLSGPSGAGKSTLLKKLFQ 22 (190)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 78999999999999999863
|
| >d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Thermus thermophilus [TaxId: 274]
Probab=97.42 E-value=6.1e-05 Score=48.97 Aligned_cols=27 Identities=19% Similarity=0.393 Sum_probs=23.0
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcCC
Q 030429 10 KQEMELSLIGLQNAGKTSLVNTIATGG 36 (177)
Q Consensus 10 ~~~~~i~i~G~~~~GKSsli~~l~~~~ 36 (177)
+.++-|+|.|.+||||||+.+.|....
T Consensus 1 k~p~IIgitG~~gSGKstva~~l~~~g 27 (191)
T d1uf9a_ 1 KHPIIIGITGNIGSGKSTVAALLRSWG 27 (191)
T ss_dssp CCCEEEEEEECTTSCHHHHHHHHHHTT
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHCC
Confidence 357889999999999999999887443
|
| >d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Streptococcus pneumoniae [TaxId: 1313]
Probab=97.41 E-value=4.6e-05 Score=50.67 Aligned_cols=23 Identities=22% Similarity=0.521 Sum_probs=20.8
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHh
Q 030429 11 QEMELSLIGLQNAGKTSLVNTIA 33 (177)
Q Consensus 11 ~~~~i~i~G~~~~GKSsli~~l~ 33 (177)
+.++|+|-|+|||||||....|.
T Consensus 2 k~i~IaIdGp~GsGKgT~ak~La 24 (223)
T d1q3ta_ 2 KTIQIAIDGPASSGKSTVAKIIA 24 (223)
T ss_dssp CCCEEEEECSSCSSHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHH
Confidence 45788999999999999999998
|
| >d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Escherichia coli [TaxId: 562]
Probab=97.36 E-value=5.2e-05 Score=50.13 Aligned_cols=22 Identities=23% Similarity=0.291 Sum_probs=19.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 030429 14 ELSLIGLQNAGKTSLVNTIATG 35 (177)
Q Consensus 14 ~i~i~G~~~~GKSsli~~l~~~ 35 (177)
=|+++||+|||||||+++|...
T Consensus 4 livi~GPSG~GK~tl~~~L~~~ 25 (205)
T d1s96a_ 4 LYIVSAPSGAGKSSLIQALLKT 25 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 4789999999999999999743
|
| >d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermus thermophilus [TaxId: 274]
Probab=97.34 E-value=5.5e-05 Score=50.98 Aligned_cols=23 Identities=39% Similarity=0.450 Sum_probs=20.5
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhc
Q 030429 12 EMELSLIGLQNAGKTSLVNTIAT 34 (177)
Q Consensus 12 ~~~i~i~G~~~~GKSsli~~l~~ 34 (177)
.-.+++.||||+||||+++.+.+
T Consensus 35 ~~~~Ll~GPpG~GKTtla~~la~ 57 (239)
T d1ixsb2 35 LEHLLLFGPPGLGKTTLAHVIAH 57 (239)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999999974
|
| >d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermotoga maritima [TaxId: 2336]
Probab=97.33 E-value=5.8e-05 Score=50.82 Aligned_cols=22 Identities=36% Similarity=0.456 Sum_probs=19.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHhc
Q 030429 13 MELSLIGLQNAGKTSLVNTIAT 34 (177)
Q Consensus 13 ~~i~i~G~~~~GKSsli~~l~~ 34 (177)
-.+++.||||+||||+++.+..
T Consensus 36 ~~~L~~GPpGtGKT~lA~~la~ 57 (238)
T d1in4a2 36 DHVLLAGPPGLGKTTLAHIIAS 57 (238)
T ss_dssp CCEEEESSTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHh
Confidence 4699999999999999999973
|
| >d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]
Probab=97.32 E-value=6e-05 Score=48.63 Aligned_cols=20 Identities=15% Similarity=0.534 Sum_probs=17.3
Q ss_pred EE-EEEcCCCCCHHHHHHHHh
Q 030429 14 EL-SLIGLQNAGKTSLVNTIA 33 (177)
Q Consensus 14 ~i-~i~G~~~~GKSsli~~l~ 33 (177)
|| +|.|.+||||||+++.|.
T Consensus 2 kiivi~G~~GsGKTT~~~~La 22 (194)
T d1nksa_ 2 KIGIVTGIPGVGKSTVLAKVK 22 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 44 567999999999999996
|
| >d1g3qa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Cell division regulator MinD species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=97.32 E-value=0.00085 Score=44.60 Aligned_cols=69 Identities=13% Similarity=0.023 Sum_probs=44.0
Q ss_pred CEEEEEEecCCchhhHHhHHHHhcCCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcEE-EEeeCCCcccccC
Q 030429 56 NVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLL-VLGNKIDKSEALS 131 (177)
Q Consensus 56 ~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i-iv~nK~D~~~~~~ 131 (177)
.+.+.++|+|+.... .....+..+|.++++...+ ..+..........+.+ .+.|++ +|.|+.|..+...
T Consensus 111 ~~d~IiiD~~~~~~~--~~~~~l~~aD~viiv~~~~-~~s~~~~~~~~~~~~~----~~~~~~giv~N~~~~~~~~~ 180 (237)
T d1g3qa_ 111 KFDFILIDCPAGLQL--DAMSAMLSGEEALLVTNPE-ISCLTDTMKVGIVLKK----AGLAILGFVLNRYGRSDRDI 180 (237)
T ss_dssp GCSEEEEECCSSSSH--HHHHHHTTCSEEEEEECSC-HHHHHHHHHHHHHHHH----TTCEEEEEEEEEETSCTTCC
T ss_pred cCCEEEEcccccccc--cchhhhhhhhccccccccc-ceecchhhHHHHHHhh----hhhhhhhhhhcccccccchh
Confidence 468899999986533 2344577799999999863 3344444444443332 255655 7899998765443
|
| >d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpA, an Hsp100 chaperone, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=97.32 E-value=6.9e-05 Score=51.47 Aligned_cols=26 Identities=23% Similarity=0.334 Sum_probs=22.2
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHhc
Q 030429 9 FKQEMELSLIGLQNAGKTSLVNTIAT 34 (177)
Q Consensus 9 ~~~~~~i~i~G~~~~GKSsli~~l~~ 34 (177)
.+..-+++++|+||||||++++.+..
T Consensus 36 r~~k~n~lLVG~~GvGKTalv~~la~ 61 (268)
T d1r6bx2 36 RRRKNNPLLVGESGVGKTAIAEGLAW 61 (268)
T ss_dssp SSSSCEEEEECCTTSSHHHHHHHHHH
T ss_pred cCccCCcEEECCCCCcHHHHHHHHHH
Confidence 34556899999999999999999873
|
| >d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: YjeE-like domain: Hypothetical protein HI0065 species: Haemophilus influenzae [TaxId: 727]
Probab=97.32 E-value=0.00041 Score=43.57 Aligned_cols=57 Identities=23% Similarity=0.200 Sum_probs=38.7
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcCCCC--CCCCCccceeEEEEEeCCEEEEEEecCCc
Q 030429 10 KQEMELSLIGLQNAGKTSLVNTIATGGYS--EDMIPTVGFNMRKVTKGNVTIKLWDLGGQ 67 (177)
Q Consensus 10 ~~~~~i~i~G~~~~GKSsli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~D~~g~ 67 (177)
+...-|++-|+-|+|||||++.++..--. ...+||..+ ...+..++..+..+|.---
T Consensus 31 ~~g~ii~L~G~LGaGKTtfvr~~~~~lg~~~~V~SPTF~l-~~~Y~~~~~~i~H~DlYRl 89 (158)
T d1htwa_ 31 EKAIMVYLNGDLGAGKTTLTRGMLQGIGHQGNVKSPTYTL-VEEYNIAGKMIYHFDLYRL 89 (158)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHTTCCSCCCCCTTTC-EEEEEETTEEEEEEECTTC
T ss_pred CCCeEEEEecCCCccHHHHHHHHHhhcccccccCCCceEE-EEeeccCCceEEEEEEecc
Confidence 44567899999999999999999854322 234444443 3345566777777788653
|
| >d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyribonucleoside kinase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=97.29 E-value=6.7e-05 Score=48.95 Aligned_cols=29 Identities=21% Similarity=0.172 Sum_probs=25.2
Q ss_pred cccccceeEEEEEcCCCCCHHHHHHHHhc
Q 030429 6 SLFFKQEMELSLIGLQNAGKTSLVNTIAT 34 (177)
Q Consensus 6 ~~~~~~~~~i~i~G~~~~GKSsli~~l~~ 34 (177)
....++++-|+|-|..||||||+++.|..
T Consensus 3 ~~~~~kp~~I~ieG~~GsGKTTl~~~L~~ 31 (197)
T d2vp4a1 3 YAEGTQPFTVLIEGNIGSGKTTYLNHFEK 31 (197)
T ss_dssp BTTTCCCEEEEEECSTTSCHHHHHHTTGG
T ss_pred ccCCCCceEEEEECCCCCCHHHHHHHHHH
Confidence 34567888999999999999999999973
|
| >d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=97.17 E-value=0.0001 Score=51.72 Aligned_cols=23 Identities=26% Similarity=0.466 Sum_probs=20.5
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhc
Q 030429 12 EMELSLIGLQNAGKTSLVNTIAT 34 (177)
Q Consensus 12 ~~~i~i~G~~~~GKSsli~~l~~ 34 (177)
.-.++++||||||||.|.+++..
T Consensus 49 ~~~iLl~GPpG~GKT~lAkalA~ 71 (309)
T d1ofha_ 49 PKNILMIGPTGVGKTEIARRLAK 71 (309)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHhh
Confidence 35689999999999999999983
|
| >d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=97.17 E-value=9.9e-05 Score=49.39 Aligned_cols=23 Identities=26% Similarity=0.277 Sum_probs=20.2
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhc
Q 030429 12 EMELSLIGLQNAGKTSLVNTIAT 34 (177)
Q Consensus 12 ~~~i~i~G~~~~GKSsli~~l~~ 34 (177)
.-.+++.|++|+||||+++.+..
T Consensus 45 ~~~lll~Gp~G~GKTtla~~iak 67 (231)
T d1iqpa2 45 MPHLLFAGPPGVGKTTAALALAR 67 (231)
T ss_dssp CCEEEEESCTTSSHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHH
Confidence 34699999999999999999973
|
| >d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.12 E-value=0.00014 Score=49.20 Aligned_cols=22 Identities=27% Similarity=0.317 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHhc
Q 030429 13 MELSLIGLQNAGKTSLVNTIAT 34 (177)
Q Consensus 13 ~~i~i~G~~~~GKSsli~~l~~ 34 (177)
-.+++.||||+||||++..+++
T Consensus 53 ~~lll~GPpG~GKTt~a~~la~ 74 (253)
T d1sxja2 53 RAAMLYGPPGIGKTTAAHLVAQ 74 (253)
T ss_dssp SEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999999984
|
| >d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=97.12 E-value=0.00017 Score=47.61 Aligned_cols=27 Identities=26% Similarity=0.427 Sum_probs=23.5
Q ss_pred ccccceeEEEEEcCCCCCHHHHHHHHh
Q 030429 7 LFFKQEMELSLIGLQNAGKTSLVNTIA 33 (177)
Q Consensus 7 ~~~~~~~~i~i~G~~~~GKSsli~~l~ 33 (177)
+...+..-|.++|.||||||||.+.|.
T Consensus 19 ~~~~kg~vIwltGlsGsGKTTia~~L~ 45 (208)
T d1m7ga_ 19 LRNQRGLTIWLTGLSASGKSTLAVELE 45 (208)
T ss_dssp HHTSSCEEEEEECSTTSSHHHHHHHHH
T ss_pred HhCCCCeEEEEECCCCCCHHHHHHHHH
Confidence 445677889999999999999999986
|
| >d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Archaeal ATPase SSO1545 species: Sulfolobus solfataricus [TaxId: 2287]
Probab=97.11 E-value=0.00012 Score=49.82 Aligned_cols=21 Identities=24% Similarity=0.373 Sum_probs=18.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHh
Q 030429 13 MELSLIGLQNAGKTSLVNTIA 33 (177)
Q Consensus 13 ~~i~i~G~~~~GKSsli~~l~ 33 (177)
-.|+|.|++|+|||||++++.
T Consensus 30 ~~i~i~G~~G~GKTsLl~~~~ 50 (283)
T d2fnaa2 30 PITLVLGLRRTGKSSIIKIGI 50 (283)
T ss_dssp SEEEEEESTTSSHHHHHHHHH
T ss_pred CEEEEEcCCCCcHHHHHHHHH
Confidence 457899999999999999987
|
| >d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6, N-domain species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=97.09 E-value=0.00016 Score=49.19 Aligned_cols=24 Identities=21% Similarity=0.281 Sum_probs=20.9
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhc
Q 030429 11 QEMELSLIGLQNAGKTSLVNTIAT 34 (177)
Q Consensus 11 ~~~~i~i~G~~~~GKSsli~~l~~ 34 (177)
..-.++|.|+||+|||++++.+..
T Consensus 42 ~~~~lll~GppGtGKT~l~~~l~~ 65 (276)
T d1fnna2 42 HYPRATLLGRPGTGKTVTLRKLWE 65 (276)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCceEEECCCCCCHHHHHHHHHH
Confidence 345799999999999999999874
|
| >d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Escherichia coli [TaxId: 562]
Probab=97.03 E-value=0.00018 Score=47.56 Aligned_cols=20 Identities=30% Similarity=0.488 Sum_probs=18.1
Q ss_pred EEEEEcCCCCCHHHHHHHHh
Q 030429 14 ELSLIGLQNAGKTSLVNTIA 33 (177)
Q Consensus 14 ~i~i~G~~~~GKSsli~~l~ 33 (177)
-|+|.|+|||||||+...+.
T Consensus 5 iI~I~GppGSGKgT~ak~La 24 (225)
T d1ckea_ 5 VITIDGPSGAGKGTLCKAMA 24 (225)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 46788999999999999997
|
| >d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Thermus thermophilus [TaxId: 274]
Probab=97.03 E-value=0.00023 Score=48.32 Aligned_cols=23 Identities=30% Similarity=0.439 Sum_probs=20.5
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhc
Q 030429 12 EMELSLIGLQNAGKTSLVNTIAT 34 (177)
Q Consensus 12 ~~~i~i~G~~~~GKSsli~~l~~ 34 (177)
+-.|++.|+||+|||++++.+.+
T Consensus 42 ~~giLl~GppGtGKT~la~aia~ 64 (247)
T d1ixza_ 42 PKGVLLVGPPGVGKTHLARAVAG 64 (247)
T ss_dssp CSEEEEECCTTSSHHHHHHHHHH
T ss_pred CceEEEecCCCCChhHHHHHHHH
Confidence 34699999999999999999983
|
| >d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Escherichia coli [TaxId: 562]
Probab=97.00 E-value=0.00024 Score=48.50 Aligned_cols=23 Identities=30% Similarity=0.410 Sum_probs=20.4
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHh
Q 030429 11 QEMELSLIGLQNAGKTSLVNTIA 33 (177)
Q Consensus 11 ~~~~i~i~G~~~~GKSsli~~l~ 33 (177)
.+-.+++.|+||+|||++++.+.
T Consensus 44 ~~~~iLL~GppGtGKT~la~~iA 66 (256)
T d1lv7a_ 44 IPKGVLMVGPPGTGKTLLAKAIA 66 (256)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHH
T ss_pred CCCeEEeeCCCCCCccHHHHHHH
Confidence 34569999999999999999998
|
| >d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C2 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.97 E-value=0.00021 Score=47.77 Aligned_cols=22 Identities=23% Similarity=0.342 Sum_probs=19.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHhc
Q 030429 13 MELSLIGLQNAGKTSLVNTIAT 34 (177)
Q Consensus 13 ~~i~i~G~~~~GKSsli~~l~~ 34 (177)
-.+++.|++|+||||+++.++.
T Consensus 34 ~~lll~Gp~G~GKTtl~~~i~~ 55 (237)
T d1sxjd2 34 PHMLFYGPPGTGKTSTILALTK 55 (237)
T ss_dssp CCEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCChHHHHHHHHH
Confidence 4589999999999999999974
|
| >d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Pantothenate kinase PanK species: Escherichia coli [TaxId: 562]
Probab=96.96 E-value=0.00027 Score=49.47 Aligned_cols=25 Identities=16% Similarity=0.256 Sum_probs=22.2
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHh
Q 030429 9 FKQEMELSLIGLQNAGKTSLVNTIA 33 (177)
Q Consensus 9 ~~~~~~i~i~G~~~~GKSsli~~l~ 33 (177)
.+.++-|+|.|++|||||||.+.+.
T Consensus 77 ~k~P~iIGIaG~sgSGKSTla~~L~ 101 (308)
T d1sq5a_ 77 QRIPYIISIAGSVAVGKSTTARVLQ 101 (308)
T ss_dssp CCCCEEEEEEECTTSSHHHHHHHHH
T ss_pred CCCCEEEEEeCCCCCCCcHHHHHHH
Confidence 4567999999999999999988885
|
| >d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.94 E-value=0.00022 Score=47.44 Aligned_cols=21 Identities=29% Similarity=0.474 Sum_probs=19.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHh
Q 030429 13 MELSLIGLQNAGKTSLVNTIA 33 (177)
Q Consensus 13 ~~i~i~G~~~~GKSsli~~l~ 33 (177)
-++++.|++|+||||+++.+.
T Consensus 37 ~~~ll~Gp~G~GKTt~a~~la 57 (224)
T d1sxjb2 37 PHMIISGMPGIGKTTSVHCLA 57 (224)
T ss_dssp CCEEEECSTTSSHHHHHHHHH
T ss_pred CeEEEECCCCCCchhhHHHHH
Confidence 468999999999999999886
|
| >d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.92 E-value=0.00031 Score=47.94 Aligned_cols=23 Identities=26% Similarity=0.380 Sum_probs=20.4
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhc
Q 030429 12 EMELSLIGLQNAGKTSLVNTIAT 34 (177)
Q Consensus 12 ~~~i~i~G~~~~GKSsli~~l~~ 34 (177)
+-.|++.|+||+|||++++.+..
T Consensus 38 ~~giLL~GppGtGKT~l~~ala~ 60 (258)
T d1e32a2 38 PRGILLYGPPGTGKTLIARAVAN 60 (258)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CceeEEecCCCCCchHHHHHHHH
Confidence 44699999999999999999983
|
| >d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6-like protein APE0152, N-terminal domain species: Aeropyrum pernix [TaxId: 56636]
Probab=96.88 E-value=0.00016 Score=49.48 Aligned_cols=20 Identities=30% Similarity=0.350 Sum_probs=17.1
Q ss_pred EEEEcCCCCCHHHHHHHHhc
Q 030429 15 LSLIGLQNAGKTSLVNTIAT 34 (177)
Q Consensus 15 i~i~G~~~~GKSsli~~l~~ 34 (177)
+++.|+||+|||++++.+..
T Consensus 49 l~l~GppGtGKT~l~~~l~~ 68 (287)
T d1w5sa2 49 YGSIGRVGIGKTTLAKFTVK 68 (287)
T ss_dssp EECTTCCSSSHHHHHHHHHH
T ss_pred EEeECCCCCCHHHHHHHHHH
Confidence 34569999999999999973
|
| >d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C5 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.87 E-value=0.00024 Score=47.98 Aligned_cols=23 Identities=22% Similarity=0.226 Sum_probs=20.2
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhc
Q 030429 12 EMELSLIGLQNAGKTSLVNTIAT 34 (177)
Q Consensus 12 ~~~i~i~G~~~~GKSsli~~l~~ 34 (177)
.-++++.|++|+||||++..+..
T Consensus 33 ~~~lll~Gp~G~GKTt~~~~la~ 55 (252)
T d1sxje2 33 LPHLLLYGPNGTGKKTRCMALLE 55 (252)
T ss_dssp CCCEEEECSTTSSHHHHHHTHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHH
Confidence 34699999999999999999874
|
| >d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein Ygr205W species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.86 E-value=0.0004 Score=48.00 Aligned_cols=26 Identities=23% Similarity=0.064 Sum_probs=22.1
Q ss_pred cccceeEEEEEcCCCCCHHHHHHHHh
Q 030429 8 FFKQEMELSLIGLQNAGKTSLVNTIA 33 (177)
Q Consensus 8 ~~~~~~~i~i~G~~~~GKSsli~~l~ 33 (177)
..+.++=|+|-|.+|||||||...+.
T Consensus 23 ~~~~P~iIGi~G~qGSGKSTl~~~l~ 48 (286)
T d1odfa_ 23 GNKCPLFIFFSGPQGSGKSFTSIQIY 48 (286)
T ss_dssp TCCSCEEEEEECCTTSSHHHHHHHHH
T ss_pred CCCCCEEEEeECCCCCCHHHHHHHHH
Confidence 45567899999999999999988764
|
| >d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.86 E-value=0.00027 Score=46.98 Aligned_cols=21 Identities=33% Similarity=0.452 Sum_probs=19.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 030429 14 ELSLIGLQNAGKTSLVNTIAT 34 (177)
Q Consensus 14 ~i~i~G~~~~GKSsli~~l~~ 34 (177)
++++.|++|+||||++..++.
T Consensus 37 ~lLl~Gp~G~GKttl~~~la~ 57 (227)
T d1sxjc2 37 HLLFYGPPGTGKTSTIVALAR 57 (227)
T ss_dssp CEEEECSSSSSHHHHHHHHHH
T ss_pred eEEEECCCCCChhHHHHHHHH
Confidence 589999999999999999974
|
| >d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=96.85 E-value=0.00027 Score=52.03 Aligned_cols=21 Identities=29% Similarity=0.517 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHh
Q 030429 13 MELSLIGLQNAGKTSLVNTIA 33 (177)
Q Consensus 13 ~~i~i~G~~~~GKSsli~~l~ 33 (177)
-||+++||+|||||-|.++|.
T Consensus 50 sNILliGPTGvGKTlLAr~LA 70 (443)
T d1g41a_ 50 KNILMIGPTGVGKTEIARRLA 70 (443)
T ss_dssp CCEEEECCTTSSHHHHHHHHH
T ss_pred ccEEEECCCCCCHHHHHHHHH
Confidence 389999999999999999997
|
| >d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=96.78 E-value=0.00044 Score=45.23 Aligned_cols=20 Identities=30% Similarity=0.612 Sum_probs=18.2
Q ss_pred EEEEEcCCCCCHHHHHHHHh
Q 030429 14 ELSLIGLQNAGKTSLVNTIA 33 (177)
Q Consensus 14 ~i~i~G~~~~GKSsli~~l~ 33 (177)
-|+|-|..||||||+++.|.
T Consensus 2 lI~ieG~dGsGKST~~~~L~ 21 (208)
T d1gsia_ 2 LIAIEGVDGAGKRTLVEKLS 21 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 48899999999999999886
|
| >d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Escherichia coli [TaxId: 562]
Probab=96.75 E-value=0.00057 Score=44.95 Aligned_cols=24 Identities=29% Similarity=0.416 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCC
Q 030429 13 MELSLIGLQNAGKTSLVNTIATGG 36 (177)
Q Consensus 13 ~~i~i~G~~~~GKSsli~~l~~~~ 36 (177)
+-|+|+|..||||||+.+.|...+
T Consensus 4 ~iIgitG~igSGKStv~~~l~~~G 27 (208)
T d1vhta_ 4 YIVALTGGIGSGKSTVANAFADLG 27 (208)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHTT
T ss_pred EEEEEECCCcCCHHHHHHHHHHCC
Confidence 458899999999999999887443
|
| >d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Haemophilus influenzae [TaxId: 727]
Probab=96.75 E-value=0.00066 Score=44.50 Aligned_cols=22 Identities=27% Similarity=0.385 Sum_probs=19.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHhc
Q 030429 13 MELSLIGLQNAGKTSLVNTIAT 34 (177)
Q Consensus 13 ~~i~i~G~~~~GKSsli~~l~~ 34 (177)
+-|+|+|..||||||+++.|..
T Consensus 3 ~iIgITG~igSGKStv~~~l~~ 24 (205)
T d1jjva_ 3 YIVGLTGGIGSGKTTIANLFTD 24 (205)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 5689999999999999998864
|
| >d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.70 E-value=0.00049 Score=45.01 Aligned_cols=24 Identities=25% Similarity=0.336 Sum_probs=19.9
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhc
Q 030429 11 QEMELSLIGLQNAGKTSLVNTIAT 34 (177)
Q Consensus 11 ~~~~i~i~G~~~~GKSsli~~l~~ 34 (177)
..--+.|.|+||+|||+|+..++.
T Consensus 22 ~G~v~~i~G~~GsGKT~l~l~la~ 45 (242)
T d1n0wa_ 22 TGSITEMFGEFRTGKTQICHTLAV 45 (242)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHH
T ss_pred CCEEEEEEeCCCCCHHHHHHHHHH
Confidence 334578999999999999988874
|
| >d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.70 E-value=0.0005 Score=47.05 Aligned_cols=23 Identities=30% Similarity=0.377 Sum_probs=20.6
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHh
Q 030429 11 QEMELSLIGLQNAGKTSLVNTIA 33 (177)
Q Consensus 11 ~~~~i~i~G~~~~GKSsli~~l~ 33 (177)
..-.|++.|++|+|||+|+++++
T Consensus 40 ~~~giLL~Gp~GtGKT~l~~ala 62 (265)
T d1r7ra3 40 PSKGVLFYGPPGCGKTLLAKAIA 62 (265)
T ss_dssp CCCEEEEBCCTTSSHHHHHHHHH
T ss_pred CCCeEEEECCCCCcchhHHHHHH
Confidence 34569999999999999999998
|
| >d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Escherichia coli [TaxId: 562]
Probab=96.59 E-value=0.00063 Score=44.69 Aligned_cols=20 Identities=35% Similarity=0.532 Sum_probs=17.9
Q ss_pred EEEEEcCCCCCHHHHHHHHh
Q 030429 14 ELSLIGLQNAGKTSLVNTIA 33 (177)
Q Consensus 14 ~i~i~G~~~~GKSsli~~l~ 33 (177)
=|+|-|..||||||+++.|.
T Consensus 4 fIviEG~dGsGKsT~~~~L~ 23 (210)
T d4tmka_ 4 YIVIEGLEGAGKTTARNVVV 23 (210)
T ss_dssp EEEEEECTTSCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 37888999999999999886
|
| >d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ATPase subunit of magnesium chelatase, BchI species: Rhodobacter capsulatus [TaxId: 1061]
Probab=96.55 E-value=0.00031 Score=49.66 Aligned_cols=21 Identities=24% Similarity=0.389 Sum_probs=19.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHh
Q 030429 13 MELSLIGLQNAGKTSLVNTIA 33 (177)
Q Consensus 13 ~~i~i~G~~~~GKSsli~~l~ 33 (177)
-+|++.|+||+|||+|++++.
T Consensus 29 h~vLl~G~pG~GKT~lar~~~ 49 (333)
T d1g8pa_ 29 GGVLVFGDRGTGKSTAVRALA 49 (333)
T ss_dssp CCEEEECCGGGCTTHHHHHHH
T ss_pred CeEEEECCCCccHHHHHHHHH
Confidence 379999999999999999986
|
| >d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Papillomavirus large T antigen helicase domain species: Simian virus 40 [TaxId: 10633]
Probab=96.53 E-value=0.00082 Score=48.07 Aligned_cols=24 Identities=21% Similarity=0.284 Sum_probs=21.3
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHh
Q 030429 10 KQEMELSLIGLQNAGKTSLVNTIA 33 (177)
Q Consensus 10 ~~~~~i~i~G~~~~GKSsli~~l~ 33 (177)
++.-.+++.||||+|||+|...++
T Consensus 152 ~~~~~~~~~g~~~~gk~~~~~~~~ 175 (362)
T d1svma_ 152 PKKRYWLFKGPIDSGKTTLAAALL 175 (362)
T ss_dssp TTCCEEEEECSTTSSHHHHHHHHH
T ss_pred CCcCeEEEECCCCCCHHHHHHHHH
Confidence 455579999999999999999997
|
| >d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Lactobacillus casei [TaxId: 1582]
Probab=96.50 E-value=0.00096 Score=42.64 Aligned_cols=26 Identities=12% Similarity=0.152 Sum_probs=21.7
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcC
Q 030429 10 KQEMELSLIGLQNAGKTSLVNTIATG 35 (177)
Q Consensus 10 ~~~~~i~i~G~~~~GKSsli~~l~~~ 35 (177)
-...-|++.|++|+||||+.-.+...
T Consensus 12 ~~g~gvl~~G~sG~GKStlal~l~~~ 37 (176)
T d1kkma_ 12 IYGLGVLITGDSGVGKSETALELVQR 37 (176)
T ss_dssp ETTEEEEEECCTTSCHHHHHHHHHHT
T ss_pred ECCEEEEEEeCCCCCHHHHHHHHHHc
Confidence 34556899999999999999998844
|
| >d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.47 E-value=0.00075 Score=44.99 Aligned_cols=23 Identities=30% Similarity=0.371 Sum_probs=19.7
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHh
Q 030429 11 QEMELSLIGLQNAGKTSLVNTIA 33 (177)
Q Consensus 11 ~~~~i~i~G~~~~GKSsli~~l~ 33 (177)
..--++|.|+||+|||+|+..+.
T Consensus 33 ~G~~~li~G~pGsGKT~l~lq~~ 55 (251)
T d1szpa2 33 TGSITELFGEFRTGKSQLCHTLA 55 (251)
T ss_dssp SSSEEEEEESTTSSHHHHHHHHT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHH
Confidence 44457899999999999999886
|
| >d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Mycoplasma pneumoniae [TaxId: 2104]
Probab=96.45 E-value=0.0011 Score=42.37 Aligned_cols=25 Identities=16% Similarity=0.178 Sum_probs=21.3
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhcC
Q 030429 11 QEMELSLIGLQNAGKTSLVNTIATG 35 (177)
Q Consensus 11 ~~~~i~i~G~~~~GKSsli~~l~~~ 35 (177)
...-|++.|++|+||||+.-.+...
T Consensus 14 ~g~gvli~G~sG~GKS~lal~l~~~ 38 (177)
T d1knxa2 14 FGVGVLLTGRSGIGKSECALDLINK 38 (177)
T ss_dssp TTEEEEEEESSSSSHHHHHHHHHTT
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHc
Confidence 4556899999999999999998843
|
| >d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=96.42 E-value=0.00089 Score=44.91 Aligned_cols=24 Identities=29% Similarity=0.393 Sum_probs=19.8
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhc
Q 030429 11 QEMELSLIGLQNAGKTSLVNTIAT 34 (177)
Q Consensus 11 ~~~~i~i~G~~~~GKSsli~~l~~ 34 (177)
..--++|.|+||+|||+|.-.++.
T Consensus 35 ~G~~~li~G~pGsGKT~~~lq~~~ 58 (254)
T d1pzna2 35 TQAITEVFGEFGSGKTQLAHTLAV 58 (254)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHH
Confidence 344578999999999999888873
|
| >d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cell division protein MukB species: Escherichia coli [TaxId: 562]
Probab=96.41 E-value=0.00013 Score=47.37 Aligned_cols=18 Identities=28% Similarity=0.444 Sum_probs=16.4
Q ss_pred EEEcCCCCCHHHHHHHHh
Q 030429 16 SLIGLQNAGKTSLVNTIA 33 (177)
Q Consensus 16 ~i~G~~~~GKSsli~~l~ 33 (177)
+|+|+.|||||||+.++.
T Consensus 28 vi~G~NGsGKStil~Ai~ 45 (222)
T d1qhla_ 28 TLSGGNGAGKSTTMAAFV 45 (222)
T ss_dssp HHHSCCSHHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHH
Confidence 567999999999999985
|
| >d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Thermotoga maritima [TaxId: 2336]
Probab=96.37 E-value=0.00063 Score=47.21 Aligned_cols=22 Identities=18% Similarity=0.619 Sum_probs=18.0
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHh
Q 030429 11 QEMELSLIGLQNAGKTSLVNTIA 33 (177)
Q Consensus 11 ~~~~i~i~G~~~~GKSsli~~l~ 33 (177)
..++ +++|+.||||||+++++.
T Consensus 24 ~~ln-vlvG~NgsGKS~iL~Ai~ 45 (308)
T d1e69a_ 24 DRVT-AIVGPNGSGKSNIIDAIK 45 (308)
T ss_dssp SSEE-EEECCTTTCSTHHHHHHH
T ss_pred CCeE-EEECCCCCcHHHHHHHHH
Confidence 3455 678999999999999884
|
| >d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Extracellular secretion NTPase EpsE species: Vibrio cholerae [TaxId: 666]
Probab=96.36 E-value=0.00058 Score=49.59 Aligned_cols=21 Identities=14% Similarity=0.219 Sum_probs=19.1
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q 030429 15 LSLIGLQNAGKTSLVNTIATG 35 (177)
Q Consensus 15 i~i~G~~~~GKSsli~~l~~~ 35 (177)
|++.|++||||||.+..++..
T Consensus 161 iLvtGpTGSGKSTTl~~~l~~ 181 (401)
T d1p9ra_ 161 ILVTGPTGSGKSTTLYAGLQE 181 (401)
T ss_dssp EEEECSTTSCHHHHHHHHHHH
T ss_pred EEEEcCCCCCccHHHHHHhhh
Confidence 789999999999999999853
|
| >d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=96.32 E-value=0.0011 Score=44.22 Aligned_cols=25 Identities=24% Similarity=0.287 Sum_probs=20.7
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhc
Q 030429 10 KQEMELSLIGLQNAGKTSLVNTIAT 34 (177)
Q Consensus 10 ~~~~~i~i~G~~~~GKSsli~~l~~ 34 (177)
++.--++|.|+||+|||+|+.+++.
T Consensus 24 ~~gsl~li~G~pGsGKT~l~~qia~ 48 (242)
T d1tf7a2 24 FKDSIILATGATGTGKTLLVSRFVE 48 (242)
T ss_dssp ESSCEEEEEECTTSSHHHHHHHHHH
T ss_pred cCCeEEEEEeCCCCCHHHHHHHHHH
Confidence 3445678999999999999988873
|
| >d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.28 E-value=0.0015 Score=42.98 Aligned_cols=22 Identities=23% Similarity=0.370 Sum_probs=18.2
Q ss_pred eeEEEEEcCCCCCHHHHHHHHh
Q 030429 12 EMELSLIGLQNAGKTSLVNTIA 33 (177)
Q Consensus 12 ~~~i~i~G~~~~GKSsli~~l~ 33 (177)
..=|+|-|..||||||+++.|.
T Consensus 3 G~lI~ieG~dGsGKsT~~~~L~ 24 (209)
T d1nn5a_ 3 GALIVLEGVDRAGKSTQSRKLV 24 (209)
T ss_dssp CCEEEEEESTTSSHHHHHHHHH
T ss_pred eeEEEEECCCCCCHHHHHHHHH
Confidence 3447888999999999888875
|
| >d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CED-4, NB-ARC domain species: Caenorhabditis elegans [TaxId: 6239]
Probab=96.26 E-value=0.0012 Score=45.44 Aligned_cols=23 Identities=22% Similarity=0.294 Sum_probs=19.9
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhc
Q 030429 12 EMELSLIGLQNAGKTSLVNTIAT 34 (177)
Q Consensus 12 ~~~i~i~G~~~~GKSsli~~l~~ 34 (177)
..-|+|.|.+|+|||||...+.+
T Consensus 44 ~~~v~I~GmgGiGKTtLA~~v~~ 66 (277)
T d2a5yb3 44 SFFLFLHGRAGSGKSVIASQALS 66 (277)
T ss_dssp SEEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 34678999999999999999864
|
| >d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Staphylococcus xylosus [TaxId: 1288]
Probab=96.20 E-value=0.0017 Score=41.14 Aligned_cols=27 Identities=11% Similarity=0.060 Sum_probs=22.3
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHhcC
Q 030429 9 FKQEMELSLIGLQNAGKTSLVNTIATG 35 (177)
Q Consensus 9 ~~~~~~i~i~G~~~~GKSsli~~l~~~ 35 (177)
.-...-|++.|++|+||||+.-.+...
T Consensus 12 ~~~g~gvli~G~sg~GKS~la~~l~~~ 38 (169)
T d1ko7a2 12 DVYGVGVLITGDSGIGKSETALELIKR 38 (169)
T ss_dssp EETTEEEEEEESTTSSHHHHHHHHHHT
T ss_pred EECCEEEEEEeCCCCCHHHHHHHHHHc
Confidence 345567999999999999999888744
|
| >d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Phosphoribulokinase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=96.19 E-value=0.00077 Score=46.54 Aligned_cols=23 Identities=22% Similarity=0.359 Sum_probs=16.9
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHh
Q 030429 11 QEMELSLIGLQNAGKTSLVNTIA 33 (177)
Q Consensus 11 ~~~~i~i~G~~~~GKSsli~~l~ 33 (177)
+..-|+|.|.+||||||+.++|.
T Consensus 3 k~pIIgIaG~SGSGKTTva~~l~ 25 (288)
T d1a7ja_ 3 KHPIISVTGSSGAGTSTVKHTFD 25 (288)
T ss_dssp TSCEEEEESCC---CCTHHHHHH
T ss_pred CCCEEEEECCCCCcHHHHHHHHH
Confidence 34469999999999999999886
|
| >d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxycytidine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.19 E-value=0.00079 Score=44.92 Aligned_cols=21 Identities=33% Similarity=0.539 Sum_probs=19.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 030429 14 ELSLIGLQNAGKTSLVNTIAT 34 (177)
Q Consensus 14 ~i~i~G~~~~GKSsli~~l~~ 34 (177)
.|+|-|+.||||||+++.|..
T Consensus 4 ~I~ieG~dGsGKST~~~~L~~ 24 (241)
T d1p5zb_ 4 KISIEGNIAAGKSTFVNILKQ 24 (241)
T ss_dssp EEEEECSTTSSHHHHHTTTGG
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999974
|
| >d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpX species: Helicobacter pylori [TaxId: 210]
Probab=96.13 E-value=0.0015 Score=46.77 Aligned_cols=23 Identities=35% Similarity=0.536 Sum_probs=20.6
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHh
Q 030429 11 QEMELSLIGLQNAGKTSLVNTIA 33 (177)
Q Consensus 11 ~~~~i~i~G~~~~GKSsli~~l~ 33 (177)
..-+++++||+|||||-|.++|.
T Consensus 67 p~~niLfiGPTGvGKTElAk~LA 89 (364)
T d1um8a_ 67 SKSNILLIGPTGSGKTLMAQTLA 89 (364)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHH
T ss_pred CCcceeeeCCCCccHHHHHHHHH
Confidence 45679999999999999999986
|
| >d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpA, an Hsp100 chaperone, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=96.12 E-value=0.0018 Score=45.39 Aligned_cols=20 Identities=20% Similarity=0.370 Sum_probs=19.0
Q ss_pred EEEEEcCCCCCHHHHHHHHh
Q 030429 14 ELSLIGLQNAGKTSLVNTIA 33 (177)
Q Consensus 14 ~i~i~G~~~~GKSsli~~l~ 33 (177)
.++++||+|||||.|...+.
T Consensus 54 ~~lf~Gp~GvGKT~lak~la 73 (315)
T d1r6bx3 54 SFLFAGPTGVGKTEVTVQLS 73 (315)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCcchhHHHHHHHH
Confidence 68999999999999999997
|
| >d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Meiotic recombination protein DMC1/LIM15 homolog species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.11 E-value=0.0038 Score=41.65 Aligned_cols=25 Identities=24% Similarity=0.259 Sum_probs=20.9
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhc
Q 030429 10 KQEMELSLIGLQNAGKTSLVNTIAT 34 (177)
Q Consensus 10 ~~~~~i~i~G~~~~GKSsli~~l~~ 34 (177)
+..--++|.|+||+|||+|..+++.
T Consensus 35 p~G~~~~i~G~~GsGKT~lalq~~~ 59 (258)
T d1v5wa_ 35 ESMAITEAFGEFRTGKTQLSHTLCV 59 (258)
T ss_dssp CSSEEEEEECCTTCTHHHHHHHHHH
T ss_pred cCCEEEEEECCCCCCHHHHHHHHHH
Confidence 3445678999999999999999874
|
| >d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: NTPase P4 species: Bacteriophage phi-12 [TaxId: 161736]
Probab=96.10 E-value=0.0018 Score=45.36 Aligned_cols=23 Identities=30% Similarity=0.498 Sum_probs=18.4
Q ss_pred eeEEE-EEcCCCCCHHHHHHHHhc
Q 030429 12 EMELS-LIGLQNAGKTSLVNTIAT 34 (177)
Q Consensus 12 ~~~i~-i~G~~~~GKSsli~~l~~ 34 (177)
.-.++ +.|+||+|||.|.+.+.+
T Consensus 122 ~~g~~l~~G~pG~GKT~la~ala~ 145 (321)
T d1w44a_ 122 ASGMVIVTGKGNSGKTPLVHALGE 145 (321)
T ss_dssp ESEEEEEECSSSSCHHHHHHHHHH
T ss_pred CCceEEEECCCCccHHHHHHHHHH
Confidence 33444 479999999999999984
|
| >d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=96.08 E-value=0.0017 Score=43.19 Aligned_cols=23 Identities=17% Similarity=0.332 Sum_probs=19.5
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHh
Q 030429 11 QEMELSLIGLQNAGKTSLVNTIA 33 (177)
Q Consensus 11 ~~~~i~i~G~~~~GKSsli~~l~ 33 (177)
..--++|.|+||+|||+|+..++
T Consensus 33 ~G~l~~i~G~~G~GKT~~~l~~a 55 (258)
T d2i1qa2 33 SQSVTEFAGVFGSGKTQIMHQSC 55 (258)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHH
T ss_pred CCeEEEEEeCCCCCHHHHHHHHH
Confidence 33457899999999999999997
|
| >d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyguanosine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.07 E-value=0.0018 Score=43.18 Aligned_cols=21 Identities=29% Similarity=0.468 Sum_probs=19.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 030429 14 ELSLIGLQNAGKTSLVNTIAT 34 (177)
Q Consensus 14 ~i~i~G~~~~GKSsli~~l~~ 34 (177)
-|+|-|.-||||||+++.|..
T Consensus 4 ~IviEG~~GsGKST~~~~L~~ 24 (241)
T d2ocpa1 4 RLSIEGNIAVGKSTFVKLLTK 24 (241)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHH
Confidence 588999999999999999973
|
| >d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.06 E-value=0.0015 Score=47.09 Aligned_cols=22 Identities=27% Similarity=0.646 Sum_probs=18.3
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHh
Q 030429 11 QEMELSLIGLQNAGKTSLVNTIA 33 (177)
Q Consensus 11 ~~~~i~i~G~~~~GKSsli~~l~ 33 (177)
..++ +|+|+.|+||||++.++.
T Consensus 25 ~~l~-~i~G~NGsGKS~ileAi~ 46 (427)
T d1w1wa_ 25 SNFT-SIIGPNGSGKSNMMDAIS 46 (427)
T ss_dssp CSEE-EEECSTTSSHHHHHHHHH
T ss_pred CCEE-EEECCCCCCHHHHHHHHH
Confidence 4565 577999999999999973
|
| >d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxynucleoside monophosphate kinase species: Bacteriophage T4 [TaxId: 10665]
Probab=95.79 E-value=0.0027 Score=42.33 Aligned_cols=21 Identities=24% Similarity=0.408 Sum_probs=18.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 030429 14 ELSLIGLQNAGKTSLVNTIAT 34 (177)
Q Consensus 14 ~i~i~G~~~~GKSsli~~l~~ 34 (177)
-|+|.|..||||||..+.|..
T Consensus 3 iIgiTG~igSGKsTva~~l~e 23 (241)
T d1deka_ 3 LIFLSGVKRSGKDTTADFIMS 23 (241)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 489999999999999999963
|
| >d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=95.75 E-value=0.003 Score=41.66 Aligned_cols=24 Identities=17% Similarity=0.093 Sum_probs=19.3
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHh
Q 030429 10 KQEMELSLIGLQNAGKTSLVNTIA 33 (177)
Q Consensus 10 ~~~~~i~i~G~~~~GKSsli~~l~ 33 (177)
+..--+.|.|+||+|||+|+..++
T Consensus 24 ~~G~~~~I~G~~G~GKT~la~~~~ 47 (242)
T d1tf7a1 24 PIGRSTLVSGTSGTGKTLFSIQFL 47 (242)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHH
T ss_pred cCCeEEEEEeCCCCCHHHHHHHHH
Confidence 344567889999999999987764
|
| >d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta prime subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Probab=95.74 E-value=0.0032 Score=41.22 Aligned_cols=21 Identities=19% Similarity=0.398 Sum_probs=18.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 030429 14 ELSLIGLQNAGKTSLVNTIAT 34 (177)
Q Consensus 14 ~i~i~G~~~~GKSsli~~l~~ 34 (177)
-+++.|++|+||||++..+..
T Consensus 26 ~lLl~Gp~G~GKtt~a~~~a~ 46 (207)
T d1a5ta2 26 ALLIQALPGMGDDALIYALSR 46 (207)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHH
Confidence 489999999999999998764
|
| >d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta prime subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Probab=95.71 E-value=0.0032 Score=42.07 Aligned_cols=20 Identities=30% Similarity=0.451 Sum_probs=18.0
Q ss_pred EEEEEcCCCCCHHHHHHHHh
Q 030429 14 ELSLIGLQNAGKTSLVNTIA 33 (177)
Q Consensus 14 ~i~i~G~~~~GKSsli~~l~ 33 (177)
.+++.|++|+||||+++.+.
T Consensus 36 ~~Ll~Gp~G~GKtt~a~~~~ 55 (239)
T d1njfa_ 36 AYLFSGTRGVGKTSIARLLA 55 (239)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHH
Confidence 37899999999999999876
|
| >d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Gene 4 protein (g4p, DNA primase), helicase domain species: Bacteriophage T7 [TaxId: 10760]
Probab=95.67 E-value=0.0033 Score=42.82 Aligned_cols=20 Identities=20% Similarity=0.262 Sum_probs=17.4
Q ss_pred EEEEEcCCCCCHHHHHHHHh
Q 030429 14 ELSLIGLQNAGKTSLVNTIA 33 (177)
Q Consensus 14 ~i~i~G~~~~GKSsli~~l~ 33 (177)
=+++.|+||+|||+|+..+.
T Consensus 37 l~vi~G~~G~GKT~~~~~la 56 (277)
T d1cr2a_ 37 VIMVTSGSGMGKSTFVRQQA 56 (277)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHH
Confidence 36899999999999988876
|
| >d1tuea_ c.37.1.20 (A:) Replication protein E1 helicase domain {Human papillomavirus type 18 [TaxId: 333761]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication protein E1 helicase domain species: Human papillomavirus type 18 [TaxId: 333761]
Probab=95.64 E-value=0.003 Score=41.03 Aligned_cols=25 Identities=20% Similarity=0.198 Sum_probs=21.7
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHh
Q 030429 9 FKQEMELSLIGLQNAGKTSLVNTIA 33 (177)
Q Consensus 9 ~~~~~~i~i~G~~~~GKSsli~~l~ 33 (177)
.++.--+++.|++++|||+|+.++.
T Consensus 50 ~PKkn~i~~~GP~~TGKS~f~~sl~ 74 (205)
T d1tuea_ 50 TPKKNCLVFCGPANTGKSYFGMSFI 74 (205)
T ss_dssp CTTCSEEEEESCGGGCHHHHHHHHH
T ss_pred CCCceEEEEECCCCccHHHHHHHHH
Confidence 3556778999999999999999887
|
| >d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Chromosomal replication initiation factor DnaA species: Aquifex aeolicus [TaxId: 63363]
Probab=95.61 E-value=0.0037 Score=41.14 Aligned_cols=20 Identities=25% Similarity=0.426 Sum_probs=18.5
Q ss_pred EEEEcCCCCCHHHHHHHHhc
Q 030429 15 LSLIGLQNAGKTSLVNTIAT 34 (177)
Q Consensus 15 i~i~G~~~~GKSsli~~l~~ 34 (177)
+.+.|++|+|||-|++++++
T Consensus 39 l~l~G~~G~GKTHLl~A~~~ 58 (213)
T d1l8qa2 39 IFIYGSVGTGKTHLLQAAGN 58 (213)
T ss_dssp EEEECSSSSSHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHH
Confidence 78999999999999999974
|
| >d1osna_ c.37.1.1 (A:) Thymidine kinase {Varicella-zoster virus [TaxId: 10335]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidine kinase species: Varicella-zoster virus [TaxId: 10335]
Probab=95.60 E-value=0.0034 Score=44.16 Aligned_cols=24 Identities=21% Similarity=0.248 Sum_probs=21.6
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhc
Q 030429 11 QEMELSLIGLQNAGKTSLVNTIAT 34 (177)
Q Consensus 11 ~~~~i~i~G~~~~GKSsli~~l~~ 34 (177)
..++|.|=|.-||||||+++.+..
T Consensus 4 ~~lrI~IEG~iGsGKSTl~~~L~~ 27 (331)
T d1osna_ 4 GVLRIYLDGAYGIGKTTAAEEFLH 27 (331)
T ss_dssp EEEEEEEEESSSSCTTHHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999999974
|
| >d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.54 E-value=0.004 Score=40.92 Aligned_cols=21 Identities=29% Similarity=0.398 Sum_probs=18.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHh
Q 030429 13 MELSLIGLQNAGKTSLVNTIA 33 (177)
Q Consensus 13 ~~i~i~G~~~~GKSsli~~l~ 33 (177)
.=|+|-|.-||||||+++.|.
T Consensus 4 k~I~iEG~DGsGKST~~~~L~ 24 (214)
T d1tmka_ 4 KLILIEGLDRTGKTTQCNILY 24 (214)
T ss_dssp CEEEEEESTTSSHHHHHHHHH
T ss_pred EEEEEECCCCCcHHHHHHHHH
Confidence 348899999999999999886
|
| >d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4 [TaxId: 10331]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidine kinase species: Equine herpesvirus type 4 [TaxId: 10331]
Probab=95.46 E-value=0.0056 Score=43.08 Aligned_cols=24 Identities=21% Similarity=0.302 Sum_probs=21.6
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhc
Q 030429 11 QEMELSLIGLQNAGKTSLVNTIAT 34 (177)
Q Consensus 11 ~~~~i~i~G~~~~GKSsli~~l~~ 34 (177)
..++|.|=|.-||||||+++.|..
T Consensus 5 ~~~rI~iEG~iGsGKSTl~~~L~~ 28 (333)
T d1p6xa_ 5 TIVRIYLDGVYGIGKSTTGRVMAS 28 (333)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHS
T ss_pred ceEEEEEECCccCCHHHHHHHHHH
Confidence 457999999999999999999973
|
| >d1e2ka_ c.37.1.1 (A:) Thymidine kinase {Herpes simplex virus type 1, different strains [TaxId: 10298]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidine kinase species: Herpes simplex virus type 1, different strains [TaxId: 10298]
Probab=95.39 E-value=0.005 Score=43.22 Aligned_cols=23 Identities=17% Similarity=0.281 Sum_probs=20.9
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHh
Q 030429 11 QEMELSLIGLQNAGKTSLVNTIA 33 (177)
Q Consensus 11 ~~~~i~i~G~~~~GKSsli~~l~ 33 (177)
.-++|.|=|.-||||||+++.|.
T Consensus 3 ~~lrI~IEG~iGsGKTTl~~~La 25 (329)
T d1e2ka_ 3 TLLRVYIDGPHGMGKTTTTQLLV 25 (329)
T ss_dssp EEEEEEECSCTTSSHHHHHHHHT
T ss_pred CceEEEEECCcCCCHHHHHHHHH
Confidence 45789999999999999999997
|
| >d1hyqa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Cell division regulator MinD species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=95.36 E-value=0.025 Score=37.04 Aligned_cols=65 Identities=18% Similarity=0.030 Sum_probs=36.6
Q ss_pred CEEEEEEecCCchhhHHhHHHHhcCCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCc-EEEEeeCCCcc
Q 030429 56 NVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIP-LLVLGNKIDKS 127 (177)
Q Consensus 56 ~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-~iiv~nK~D~~ 127 (177)
.+++.++|+|+..... ....+..+|.+++|...+. .+.............. +.+ +-+|.|+.+..
T Consensus 109 ~~D~viiD~~~~~~~~--~~~~l~~ad~v~~v~~~~~-~~~~~~~~~~~~~~~~----~~~~~~iv~N~~~~~ 174 (232)
T d1hyqa_ 109 STDILLLDAPAGLERS--AVIAIAAAQELLLVVNPEI-SSITDGLKTKIVAERL----GTKVLGVVVNRITTL 174 (232)
T ss_dssp TCSEEEEECCSSSSHH--HHHHHHHSSEEEEEECSSH-HHHHHHHHHHHHHHHH----TCEEEEEEEEEECTT
T ss_pred ccceeeecccccccch--hHHHhhhhheeeeeccccc-cchhhhhhhhhhhhhc----ccccccccccccccc
Confidence 3567889998865332 2334556899999988632 2233333322222222 233 44678998753
|
| >d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric replicative helicase repA species: Escherichia coli [TaxId: 562]
Probab=95.36 E-value=0.0048 Score=41.81 Aligned_cols=20 Identities=30% Similarity=0.302 Sum_probs=17.2
Q ss_pred EEEEEcCCCCCHHHHHHHHh
Q 030429 14 ELSLIGLQNAGKTSLVNTIA 33 (177)
Q Consensus 14 ~i~i~G~~~~GKSsli~~l~ 33 (177)
-.+|.|++|+|||+|+-.++
T Consensus 31 ~~~i~G~~G~GKS~l~l~la 50 (274)
T d1nlfa_ 31 VGALVSPGGAGKSMLALQLA 50 (274)
T ss_dssp EEEEEESTTSSHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHH
Confidence 35689999999999988775
|
| >d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Bacterial conjugative coupling protein TrwB species: Escherichia coli [TaxId: 562]
Probab=95.27 E-value=0.0047 Score=44.78 Aligned_cols=21 Identities=29% Similarity=0.438 Sum_probs=18.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHh
Q 030429 13 MELSLIGLQNAGKTSLVNTIA 33 (177)
Q Consensus 13 ~~i~i~G~~~~GKSsli~~l~ 33 (177)
-+++|+|.+|||||+++..+.
T Consensus 51 ~H~~I~G~tGsGKT~~l~~li 71 (433)
T d1e9ra_ 51 RHLLVNGATGTGKSVLLRELA 71 (433)
T ss_dssp GCEEEEECTTSSHHHHHHHHH
T ss_pred ceEEEEeCCCCcHHHHHHHHH
Confidence 468999999999999988776
|
| >d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DEXX box DNA helicase species: Escherichia coli, RepD [TaxId: 562]
Probab=95.18 E-value=0.0038 Score=42.92 Aligned_cols=18 Identities=28% Similarity=0.375 Sum_probs=14.5
Q ss_pred EEEEcCCCCCHHHH-HHHH
Q 030429 15 LSLIGLQNAGKTSL-VNTI 32 (177)
Q Consensus 15 i~i~G~~~~GKSsl-i~~l 32 (177)
++|+|.||+||||. ++++
T Consensus 17 ~lI~g~aGTGKTt~l~~rv 35 (306)
T d1uaaa1 17 CLVLAGAGSGKTRVITNKI 35 (306)
T ss_dssp EEECCCTTSCHHHHHHHHH
T ss_pred EEEEeeCCccHHHHHHHHH
Confidence 68999999999975 4443
|
| >d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DEXX box DNA helicase species: Bacillus stearothermophilus, PcrA [TaxId: 1422]
Probab=95.06 E-value=0.0051 Score=42.63 Aligned_cols=16 Identities=25% Similarity=0.414 Sum_probs=13.5
Q ss_pred EEEEEcCCCCCHHHHH
Q 030429 14 ELSLIGLQNAGKTSLV 29 (177)
Q Consensus 14 ~i~i~G~~~~GKSsli 29 (177)
.++|.|.|||||||.+
T Consensus 26 ~~lV~g~aGSGKTt~l 41 (318)
T d1pjra1 26 PLLIMAGAGSGKTRVL 41 (318)
T ss_dssp CEEEEECTTSCHHHHH
T ss_pred CEEEEecCCccHHHHH
Confidence 3789999999999763
|
| >d1g8fa3 c.37.1.15 (A:390-511) ATP sulfurylase C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ATP sulfurylase C-terminal domain domain: ATP sulfurylase C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.01 E-value=0.01 Score=35.12 Aligned_cols=25 Identities=16% Similarity=0.100 Sum_probs=22.4
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHh
Q 030429 9 FKQEMELSLIGLQNAGKTSLVNTIA 33 (177)
Q Consensus 9 ~~~~~~i~i~G~~~~GKSsli~~l~ 33 (177)
.++.+.|.+.|..|+|||||.+.|.
T Consensus 3 ~kqgf~i~~tg~~~~gk~~ia~al~ 27 (122)
T d1g8fa3 3 PKQGFSIVLGNSLTVSREQLSIALL 27 (122)
T ss_dssp GGCCEEEEECTTCCSCHHHHHHHHH
T ss_pred CccceEEEEeCCCCCCHHHHHHHHH
Confidence 3677999999999999999999985
|
| >d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Transcription termination factor Rho, ATPase domain species: Escherichia coli [TaxId: 562]
Probab=94.90 E-value=0.009 Score=41.05 Aligned_cols=24 Identities=29% Similarity=0.349 Sum_probs=20.6
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhc
Q 030429 11 QEMELSLIGLQNAGKTSLVNTIAT 34 (177)
Q Consensus 11 ~~~~i~i~G~~~~GKSsli~~l~~ 34 (177)
+.=|++|+|++|+|||+|+..+..
T Consensus 42 rGQr~~I~g~~g~GKT~l~~~i~~ 65 (289)
T d1xpua3 42 RGQRGLIVAPPKAGKTMLLQNIAQ 65 (289)
T ss_dssp TTCEEEEEECSSSSHHHHHHHHHH
T ss_pred CCCeeeEeCCCCCCHHHHHHHHHH
Confidence 445899999999999999988873
|
| >d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=94.79 E-value=0.047 Score=37.00 Aligned_cols=78 Identities=13% Similarity=0.064 Sum_probs=42.2
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEeCCEEEEEEecCCchhhHHhHHHHhcCCCEEEEEEeC
Q 030429 11 QEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDA 90 (177)
Q Consensus 11 ~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~ 90 (177)
..--+.+.|++++|||+|+-.++... ...+....++|+-+.-.-.......+ +.|-++ ++.
T Consensus 59 ~g~i~e~~G~~~~GKT~l~l~~~~~~----------------q~~g~~~vyIDtE~~~~~e~a~~~Gv-D~d~il-~~~- 119 (269)
T d1mo6a1 59 RGRVIEIYGPESSGKTTVALHAVANA----------------QAAGGVAAFIDAEHALDPDYAKKLGV-DTDSLL-VSQ- 119 (269)
T ss_dssp SSSEEEEECSSSSSHHHHHHHHHHHH----------------HHTTCEEEEEESSCCCCHHHHHHHTC-CGGGCE-EEC-
T ss_pred cceeEEEecCCCcHHHHHHHHHHHHH----------------hcCCCEEEEEECCccCCHHHHHHhCC-CHHHeE-Eec-
Confidence 33456889999999999987765110 01223445668887332221111122 233332 333
Q ss_pred CCCCCHHHHHHHHHHHHcC
Q 030429 91 ADRDSVPIARSELHELLMK 109 (177)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~ 109 (177)
+.+.++.......+...
T Consensus 120 --~~~~E~~~~~~~~l~~~ 136 (269)
T d1mo6a1 120 --PDTGEQALEIADMLIRS 136 (269)
T ss_dssp --CSSHHHHHHHHHHHHHT
T ss_pred --CCCHHHHHHHHHHHHhc
Confidence 44577777666666544
|
| >d1u0ja_ c.37.1.20 (A:) Rep 40 protein helicase domain {Adeno-associated virus 2, AAV2 [TaxId: 10804]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Rep 40 protein helicase domain species: Adeno-associated virus 2, AAV2 [TaxId: 10804]
Probab=94.77 E-value=0.011 Score=40.20 Aligned_cols=25 Identities=28% Similarity=0.426 Sum_probs=21.4
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhc
Q 030429 10 KQEMELSLIGLQNAGKTSLVNTIAT 34 (177)
Q Consensus 10 ~~~~~i~i~G~~~~GKSsli~~l~~ 34 (177)
++.--+.+.|++++|||+|++.+..
T Consensus 102 ~k~n~~~l~G~~~tGKS~f~~~i~~ 126 (267)
T d1u0ja_ 102 GKRNTIWLFGPATTGKTNIAEAIAH 126 (267)
T ss_dssp TTCCEEEEECSTTSSHHHHHHHHHH
T ss_pred CccEEEEEEcCCCCCHHHHHHHHHH
Confidence 4566788999999999999999873
|
| >d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Exodeoxyribonuclease V alpha chain (RecD) species: Escherichia coli [TaxId: 562]
Probab=94.54 E-value=0.011 Score=41.98 Aligned_cols=19 Identities=26% Similarity=0.295 Sum_probs=15.7
Q ss_pred EEEEEcCCCCCHHHHHHHH
Q 030429 14 ELSLIGLQNAGKTSLVNTI 32 (177)
Q Consensus 14 ~i~i~G~~~~GKSsli~~l 32 (177)
-.+|.|+||+||||++..+
T Consensus 165 ~~vI~G~pGTGKTt~i~~~ 183 (359)
T d1w36d1 165 ISVISGGPGTGKTTTVAKL 183 (359)
T ss_dssp EEEEECCTTSTHHHHHHHH
T ss_pred eEEEEcCCCCCceehHHHH
Confidence 4688999999999987543
|
| >d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Thermus thermophilus [TaxId: 274]
Probab=94.51 E-value=0.0098 Score=41.47 Aligned_cols=20 Identities=35% Similarity=0.581 Sum_probs=18.3
Q ss_pred EEEEEcCCCCCHHHHHHHHh
Q 030429 14 ELSLIGLQNAGKTSLVNTIA 33 (177)
Q Consensus 14 ~i~i~G~~~~GKSsli~~l~ 33 (177)
.++++|++|+|||.+.+.+.
T Consensus 55 ~~lf~Gp~G~GKt~lak~la 74 (315)
T d1qvra3 55 SFLFLGPTGVGKTELAKTLA 74 (315)
T ss_dssp EEEEBSCSSSSHHHHHHHHH
T ss_pred EEEEECCCcchHHHHHHHHH
Confidence 67888999999999999887
|
| >d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Deinococcus radiodurans [TaxId: 1299]
Probab=94.33 E-value=0.055 Score=36.64 Aligned_cols=78 Identities=18% Similarity=0.093 Sum_probs=42.9
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEeCCEEEEEEecCCchhhHHhHHHHhcCCCEEEEEEeC
Q 030429 11 QEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDA 90 (177)
Q Consensus 11 ~~~~i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~ 90 (177)
..--+.+.|++++|||+|+-.++-.. . ..+..+.++|+-+.-+.......-+. .|-++ ++.
T Consensus 56 ~g~itei~G~~~sGKT~l~l~~~~~a-q---------------k~g~~v~yiDtE~~~~~~~a~~~Gvd-~d~i~-~~~- 116 (268)
T d1xp8a1 56 RGRITEIYGPESGGKTTLALAIVAQA-Q---------------KAGGTCAFIDAEHALDPVYARALGVN-TDELL-VSQ- 116 (268)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHH-H---------------HTTCCEEEEESSCCCCHHHHHHTTCC-GGGCE-EEC-
T ss_pred CceEEEEecCCccchHHHHHHHHHHH-H---------------hCCCEEEEEECCccCCHHHHHHhCCC-chhEE-EEc-
Confidence 33456789999999999998876210 0 11223456688764333221122222 33332 233
Q ss_pred CCCCCHHHHHHHHHHHHcC
Q 030429 91 ADRDSVPIARSELHELLMK 109 (177)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~ 109 (177)
+.+.++....+..+...
T Consensus 117 --~~~~E~~~~~~~~l~~~ 133 (268)
T d1xp8a1 117 --PDNGEQALEIMELLVRS 133 (268)
T ss_dssp --CSSHHHHHHHHHHHHTT
T ss_pred --CCCHHHHHHHHHHHHhc
Confidence 45577777777666544
|
| >d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Escherichia coli [TaxId: 562]
Probab=94.10 E-value=0.016 Score=39.24 Aligned_cols=21 Identities=24% Similarity=0.395 Sum_probs=18.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHh
Q 030429 13 MELSLIGLQNAGKTSLVNTIA 33 (177)
Q Consensus 13 ~~i~i~G~~~~GKSsli~~l~ 33 (177)
--+.+.|++|+|||||+-.++
T Consensus 55 ~itei~G~~gsGKTtl~l~~~ 75 (263)
T d1u94a1 55 RIVEIYGPESSGKTTLTLQVI 75 (263)
T ss_dssp SEEEEECSTTSSHHHHHHHHH
T ss_pred eEEEEecCCCcHHHHHHHHHH
Confidence 346889999999999988776
|
| >d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=93.78 E-value=0.021 Score=37.93 Aligned_cols=19 Identities=26% Similarity=0.426 Sum_probs=17.7
Q ss_pred EEEEcCCCCCHHHHHHHHh
Q 030429 15 LSLIGLQNAGKTSLVNTIA 33 (177)
Q Consensus 15 i~i~G~~~~GKSsli~~l~ 33 (177)
+++.|+..+||||+++++.
T Consensus 44 ~iiTGpN~~GKSt~lk~i~ 62 (234)
T d1wb9a2 44 LIITGPNMGGKSTYMRQTA 62 (234)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEeccCchhhHHHHHHHH
Confidence 6899999999999999986
|
| >d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=93.58 E-value=0.024 Score=37.42 Aligned_cols=19 Identities=26% Similarity=0.454 Sum_probs=17.8
Q ss_pred EEEEcCCCCCHHHHHHHHh
Q 030429 15 LSLIGLQNAGKTSLVNTIA 33 (177)
Q Consensus 15 i~i~G~~~~GKSsli~~l~ 33 (177)
+++.|+..+||||+++++.
T Consensus 38 ~iiTGpN~~GKSt~lk~i~ 56 (224)
T d1ewqa2 38 VLITGPNMAGKSTFLRQTA 56 (224)
T ss_dssp EEEESCSSSSHHHHHHHHH
T ss_pred EEEECCCccccchhhhhhH
Confidence 6899999999999999886
|
| >d1ny5a2 c.37.1.20 (A:138-384) Transcriptional activator sigm54 (NtrC1), C-terminal domain {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Transcriptional activator sigm54 (NtrC1), C-terminal domain species: Aquifex aeolicus [TaxId: 63363]
Probab=93.56 E-value=0.022 Score=38.14 Aligned_cols=25 Identities=20% Similarity=0.210 Sum_probs=20.8
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHh
Q 030429 9 FKQEMELSLIGLQNAGKTSLVNTIA 33 (177)
Q Consensus 9 ~~~~~~i~i~G~~~~GKSsli~~l~ 33 (177)
.....-|+|.|++|+||+.+.+.+-
T Consensus 20 a~~~~pvlI~Ge~GtGK~~~A~~ih 44 (247)
T d1ny5a2 20 SCAECPVLITGESGVGKEVVARLIH 44 (247)
T ss_dssp TTCCSCEEEECSTTSSHHHHHHHHH
T ss_pred hCCCCCEEEECCCCcCHHHHHHHHH
Confidence 3445678999999999999998885
|
| >d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1 ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Central domain of beta subunit of F1 ATP synthase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=93.40 E-value=0.029 Score=38.19 Aligned_cols=23 Identities=26% Similarity=0.395 Sum_probs=19.8
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHh
Q 030429 11 QEMELSLIGLQNAGKTSLVNTIA 33 (177)
Q Consensus 11 ~~~~i~i~G~~~~GKSsli~~l~ 33 (177)
+.=|++++|.+|+|||+|+..+.
T Consensus 67 kGQr~~If~~~g~GKt~l~~~i~ 89 (276)
T d2jdid3 67 KGGKIGLFGGAGVGKTVLIMELI 89 (276)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHH
T ss_pred CCCEEEeeCCCCCCHHHHHHHHH
Confidence 33479999999999999988886
|
| >d1c9ka_ c.37.1.11 (A:) Adenosylcobinamide kinase/adenosylcobinamide phosphate guanylyltransferase CobU {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Adenosylcobinamide kinase/adenosylcobinamide phosphate guanylyltransferase CobU species: Salmonella typhimurium [TaxId: 90371]
Probab=93.24 E-value=0.023 Score=36.14 Aligned_cols=21 Identities=14% Similarity=0.273 Sum_probs=18.8
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q 030429 15 LSLIGLQNAGKTSLVNTIATG 35 (177)
Q Consensus 15 i~i~G~~~~GKSsli~~l~~~ 35 (177)
++|+|...||||.+..++...
T Consensus 2 iLVtGGarSGKS~~AE~l~~~ 22 (180)
T d1c9ka_ 2 ILVTGGARSGKSRHAEALIGD 22 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS
T ss_pred EEEECCCCccHHHHHHHHHhc
Confidence 689999999999999999743
|
| >d1cp2a_ c.37.1.10 (A:) Nitrogenase iron protein {Clostridium pasteurianum [TaxId: 1501]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Nitrogenase iron protein species: Clostridium pasteurianum [TaxId: 1501]
Probab=93.21 E-value=0.031 Score=37.58 Aligned_cols=84 Identities=12% Similarity=0.088 Sum_probs=42.8
Q ss_pred CEEEEEEecCCchhhHH-hHHHHhcCCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCc-EEEEeeCCCcccccC-H
Q 030429 56 NVTIKLWDLGGQRRFRT-MWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIP-LLVLGNKIDKSEALS-K 132 (177)
Q Consensus 56 ~~~~~~~D~~g~~~~~~-~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-~iiv~nK~D~~~~~~-~ 132 (177)
.+++.++|+|+...... ........+|.++++.+. +..++.........+.......+.+ .-++.|+.+.....+ .
T Consensus 115 ~~D~viiD~p~~~~~~~~~~~~~~~~ad~vliv~~~-~~~sl~~~~~~~~~i~~~~~~~~~~~~~vv~N~~~~~~~~~~~ 193 (269)
T d1cp2a_ 115 DLDYVFYDVLGDVVCGGFAMPIREGKAQEIYIVASG-EMMALYAANNISKGIQKYAKSGGVRLGGIICNSRKVANEYELL 193 (269)
T ss_dssp TCSEEEEEEECSSCSTTTTHHHHTTSCCEEEEEECS-SHHHHHHHHHHHHHHHHHBTTBBCEEEEEEEECCSSSCCHHHH
T ss_pred cCCEEEeccCCccchhHHHHHHHhhccCceeeccch-hhhHHHHHHHHHHHHHhhccccceeccceEEeeecCCCccchh
Confidence 46788999987443222 222334557888888775 3334444333333332211112333 346789988765422 2
Q ss_pred HHHHHHhC
Q 030429 133 QALVDQLG 140 (177)
Q Consensus 133 ~~~~~~~~ 140 (177)
+++.+.++
T Consensus 194 ~~~~~~~~ 201 (269)
T d1cp2a_ 194 DAFAKELG 201 (269)
T ss_dssp HHHHHHHT
T ss_pred hhhHhhcC
Confidence 33444443
|
| >d2b8ta1 c.37.1.24 (A:11-149) Thymidine kinase, TK1, N-terminal domain {Ureaplasma urealyticum [TaxId: 2130]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Type II thymidine kinase domain: Thymidine kinase, TK1, N-terminal domain species: Ureaplasma urealyticum [TaxId: 2130]
Probab=91.85 E-value=0.052 Score=32.88 Aligned_cols=17 Identities=35% Similarity=0.499 Sum_probs=13.9
Q ss_pred EEEcCCCCCHHH-HHHHH
Q 030429 16 SLIGLQNAGKTS-LVNTI 32 (177)
Q Consensus 16 ~i~G~~~~GKSs-li~~l 32 (177)
+++|+-.||||| |++++
T Consensus 6 ~i~GpMfsGKTteLi~~~ 23 (139)
T d2b8ta1 6 FITGPMFAGKTAELIRRL 23 (139)
T ss_dssp EEECSTTSCHHHHHHHHH
T ss_pred EEEccccCHHHHHHHHHH
Confidence 578999999999 55555
|
| >d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III, N-domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: gamma subunit of DNA polymerase III, N-domain species: Thermotoga maritima [TaxId: 2336]
Probab=91.82 E-value=0.048 Score=35.14 Aligned_cols=26 Identities=4% Similarity=0.003 Sum_probs=22.4
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHhc
Q 030429 9 FKQEMELSLIGLQNAGKTSLVNTIAT 34 (177)
Q Consensus 9 ~~~~~~i~i~G~~~~GKSsli~~l~~ 34 (177)
.+....+++.|++|+|||++...+.+
T Consensus 12 ~~~~~~~l~~G~~g~gk~~~a~~l~~ 37 (198)
T d2gnoa2 12 KSEGISILINGEDLSYPREVSLELPE 37 (198)
T ss_dssp TCSSEEEEEECSSSSHHHHHHHHHHH
T ss_pred cCCCceEEEECCCCCCHHHHHHHHHH
Confidence 44667999999999999999998873
|
| >d1ihua2 c.37.1.10 (A:308-586) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Arsenite-translocating ATPase ArsA species: Escherichia coli [TaxId: 562]
Probab=91.38 E-value=0.065 Score=36.07 Aligned_cols=22 Identities=41% Similarity=0.576 Sum_probs=15.8
Q ss_pred eeEE-EEEcCCCCCHHHHHHHHh
Q 030429 12 EMEL-SLIGLQNAGKTSLVNTIA 33 (177)
Q Consensus 12 ~~~i-~i~G~~~~GKSsli~~l~ 33 (177)
..+| ++.|..|+||||+.-.|.
T Consensus 19 ~~~iii~sGKGGVGKTT~a~nLA 41 (279)
T d1ihua2 19 EHGLIMLMGKGGVGKTTMAAAIA 41 (279)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHH
Confidence 3444 455999999999866554
|
| >d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: HCV helicase domain species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]
Probab=91.20 E-value=0.054 Score=32.28 Aligned_cols=20 Identities=20% Similarity=0.152 Sum_probs=16.0
Q ss_pred EEEEEcCCCCCHHHHHHHHh
Q 030429 14 ELSLIGLQNAGKTSLVNTIA 33 (177)
Q Consensus 14 ~i~i~G~~~~GKSsli~~l~ 33 (177)
..++.+++|+|||+++-.+.
T Consensus 10 ~~ll~apTGsGKT~~~~~~~ 29 (136)
T d1a1va1 10 VAHLHAPTGSGKSTKVPAAY 29 (136)
T ss_dssp EEEEECCTTSCTTTHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHH
Confidence 34778999999999876654
|
| >d2jdia3 c.37.1.11 (A:95-379) Central domain of alpha subunit of F1 ATP synthase {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Central domain of alpha subunit of F1 ATP synthase species: Cow (Bos taurus) [TaxId: 9913]
Probab=90.91 E-value=0.057 Score=36.90 Aligned_cols=23 Identities=26% Similarity=0.300 Sum_probs=19.4
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHh
Q 030429 11 QEMELSLIGLQNAGKTSLVNTIA 33 (177)
Q Consensus 11 ~~~~i~i~G~~~~GKSsli~~l~ 33 (177)
+.=|++++|.+|+|||+|+..+.
T Consensus 67 ~GQr~~If~~~g~GKt~ll~~~~ 89 (285)
T d2jdia3 67 RGQRELIIGDRQTGKTSIAIDTI 89 (285)
T ss_dssp TTCBCEEEESTTSSHHHHHHHHH
T ss_pred CCCEEEeecCCCCChHHHHHHHH
Confidence 44578999999999999987665
|
| >d1ihua1 c.37.1.10 (A:1-296) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Arsenite-translocating ATPase ArsA species: Escherichia coli [TaxId: 562]
Probab=90.81 E-value=0.11 Score=35.14 Aligned_cols=22 Identities=32% Similarity=0.273 Sum_probs=17.2
Q ss_pred eeEEEEEcCCCCCHHHHHHHHh
Q 030429 12 EMELSLIGLQNAGKTSLVNTIA 33 (177)
Q Consensus 12 ~~~i~i~G~~~~GKSsli~~l~ 33 (177)
+--|.+.|..|+||||+.-.+.
T Consensus 8 p~~i~~sGKGGVGKTTvaa~lA 29 (296)
T d1ihua1 8 PPYLFFTGKGGVGKTSISCATA 29 (296)
T ss_dssp CSEEEEECSTTSSHHHHHHHHH
T ss_pred CeEEEEECCCcChHHHHHHHHH
Confidence 3456789999999999766664
|
| >d2afhe1 c.37.1.10 (E:1-289) Nitrogenase iron protein {Azotobacter vinelandii [TaxId: 354]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Nitrogenase iron protein species: Azotobacter vinelandii [TaxId: 354]
Probab=90.41 E-value=0.1 Score=35.43 Aligned_cols=84 Identities=13% Similarity=0.108 Sum_probs=40.7
Q ss_pred CEEEEEEecCCchhhHHhHH-HHhcCCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCCCCCcE-EEEeeCCCcccccC-H
Q 030429 56 NVTIKLWDLGGQRRFRTMWE-RYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPL-LVLGNKIDKSEALS-K 132 (177)
Q Consensus 56 ~~~~~~~D~~g~~~~~~~~~-~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~-iiv~nK~D~~~~~~-~ 132 (177)
.+.+.++|+|+......... .....++.++++... +..++.........+.........++ -+|.|+.+.....+ .
T Consensus 118 ~~D~iiiD~pp~~~~~~~~~~~~~~~a~~vlv~~~~-~~~s~~~~~~~~~~i~~~~~~~~~~~~gvv~n~~~~~~~~~~~ 196 (289)
T d2afhe1 118 DLDFVFYDVLGDVVCGGFAMPIRENKAQEIYIVCSG-EMMAMYAANNISKGIVKYANSGSVRLGGLICNSRNTDREDELI 196 (289)
T ss_dssp TCSEEEEEEECSSCCTTTTHHHHTTCCCEEEEEECS-SHHHHHHHHHHHHHHHHHHTTSCCEEEEEEEECCCCTTHHHHH
T ss_pred cCCeEeeccCCccCHHHHHHHHHhhccceeecccch-hHHHHHHHHHHHHHHHhhhhcccccccceeehhhcchhhHHHH
Confidence 46788889987543222111 223456777766554 32333334333333322212234443 36789987644322 2
Q ss_pred HHHHHHhC
Q 030429 133 QALVDQLG 140 (177)
Q Consensus 133 ~~~~~~~~ 140 (177)
+++.+.++
T Consensus 197 ~~~~~~~g 204 (289)
T d2afhe1 197 IALANKLG 204 (289)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHcC
Confidence 34444444
|
| >d1y7ta1 c.2.1.5 (A:0-153) Malate dehydrogenase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Thermus thermophilus [TaxId: 274]
Probab=90.30 E-value=0.12 Score=31.65 Aligned_cols=26 Identities=31% Similarity=0.451 Sum_probs=18.5
Q ss_pred cceeEEEEEcC-CCCCHHHHHHHHhcCC
Q 030429 10 KQEMELSLIGL-QNAGKTSLVNTIATGG 36 (177)
Q Consensus 10 ~~~~~i~i~G~-~~~GKSsli~~l~~~~ 36 (177)
++++||.++|. .++| +++...+..+.
T Consensus 2 ~~p~KV~IiGA~G~VG-~~~a~~l~~~~ 28 (154)
T d1y7ta1 2 KAPVRVAVTGAAGQIG-YSLLFRIAAGE 28 (154)
T ss_dssp CCCEEEEESSTTSHHH-HHHHHHHHTTT
T ss_pred CCCCEEEEECCCCHHH-HHHHHHHHhcc
Confidence 36789999996 7788 55566665444
|
| >d1byia_ c.37.1.10 (A:) Dethiobiotin synthetase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Dethiobiotin synthetase species: Escherichia coli [TaxId: 562]
Probab=89.93 E-value=0.12 Score=33.19 Aligned_cols=20 Identities=20% Similarity=0.260 Sum_probs=17.0
Q ss_pred EEEEEcCC-CCCHHHHHHHHh
Q 030429 14 ELSLIGLQ-NAGKTSLVNTIA 33 (177)
Q Consensus 14 ~i~i~G~~-~~GKSsli~~l~ 33 (177)
|+.|.|-. ||||||+.-.|.
T Consensus 3 ~~~i~gt~~GVGKTtvs~~La 23 (224)
T d1byia_ 3 RYFVTGTDTEVGKTVASCALL 23 (224)
T ss_dssp EEEEEESSTTSCHHHHHHHHH
T ss_pred eEEEEECCCCccHHHHHHHHH
Confidence 67899985 999999977775
|
| >d1fx0a3 c.37.1.11 (A:97-372) Central domain of alpha subunit of F1 ATP synthase {Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Central domain of alpha subunit of F1 ATP synthase species: Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]
Probab=89.24 E-value=0.074 Score=36.15 Aligned_cols=23 Identities=22% Similarity=0.317 Sum_probs=19.0
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHh
Q 030429 11 QEMELSLIGLQNAGKTSLVNTIA 33 (177)
Q Consensus 11 ~~~~i~i~G~~~~GKSsli~~l~ 33 (177)
+.=|++|+|.+|+|||+|+..+.
T Consensus 66 ~GQr~~Ifg~~g~GKt~l~~~~~ 88 (276)
T d1fx0a3 66 RGQRELIIGDRQTGKTAVATDTI 88 (276)
T ss_dssp TTCBCBEEESSSSSHHHHHHHHH
T ss_pred CCceEeeccCCCCChHHHHHHHH
Confidence 44578999999999999987654
|
| >d2olra1 c.91.1.1 (A:228-540) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: PEP carboxykinase C-terminal domain domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) species: Escherichia coli [TaxId: 562]
Probab=89.11 E-value=0.085 Score=36.38 Aligned_cols=15 Identities=40% Similarity=0.654 Sum_probs=13.2
Q ss_pred EEEEcCCCCCHHHHH
Q 030429 15 LSLIGLQNAGKTSLV 29 (177)
Q Consensus 15 i~i~G~~~~GKSsli 29 (177)
-++.|.+|+|||||-
T Consensus 17 alfFGLSGTGKTTLs 31 (313)
T d2olra1 17 AVFFGLSGTGKTTLS 31 (313)
T ss_dssp EEEECSTTSSHHHHH
T ss_pred EEEEccCCCCcccce
Confidence 479999999999975
|
| >d7mdha1 c.2.1.5 (A:23-197) Malate dehydrogenase {Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]
Probab=88.97 E-value=0.31 Score=30.50 Aligned_cols=26 Identities=19% Similarity=0.335 Sum_probs=18.1
Q ss_pred cceeEEEEEcC-CCCCHHHHHHHHhcCC
Q 030429 10 KQEMELSLIGL-QNAGKTSLVNTIATGG 36 (177)
Q Consensus 10 ~~~~~i~i~G~-~~~GKSsli~~l~~~~ 36 (177)
++.+||.|+|. .++|- +|+.++..+.
T Consensus 22 k~~~kV~I~GA~G~Ig~-~l~~~La~g~ 48 (175)
T d7mdha1 22 KKLVNIAVSGAAGMISN-HLLFKLASGE 48 (175)
T ss_dssp CCCEEEEEETTTSHHHH-HHHHHHHHTT
T ss_pred CCCcEEEEECCCcHHHH-HHHHHHHcCc
Confidence 56789999997 66774 5555665443
|
| >d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: YFV helicase domain species: Yellow fever virus [TaxId: 11089]
Probab=88.76 E-value=0.066 Score=31.60 Aligned_cols=19 Identities=37% Similarity=0.202 Sum_probs=15.1
Q ss_pred cceeEEEEEcCCCCCHHHH
Q 030429 10 KQEMELSLIGLQNAGKTSL 28 (177)
Q Consensus 10 ~~~~~i~i~G~~~~GKSsl 28 (177)
++.-++++.+++|+|||..
T Consensus 5 ~~~~~~il~~~tGsGKT~~ 23 (140)
T d1yksa1 5 KKGMTTVLDFHPGAGKTRR 23 (140)
T ss_dssp STTCEEEECCCTTSSTTTT
T ss_pred HcCCcEEEEcCCCCChhHH
Confidence 4556788889999999943
|
| >d1j3ba1 c.91.1.1 (A:212-529) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: PEP carboxykinase C-terminal domain domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) species: Thermus thermophilus [TaxId: 274]
Probab=88.74 E-value=0.092 Score=36.32 Aligned_cols=16 Identities=38% Similarity=0.574 Sum_probs=13.7
Q ss_pred EEEEEcCCCCCHHHHH
Q 030429 14 ELSLIGLQNAGKTSLV 29 (177)
Q Consensus 14 ~i~i~G~~~~GKSsli 29 (177)
--++.|.+|+|||||-
T Consensus 16 valffGLSGTGKTTLs 31 (318)
T d1j3ba1 16 VAVFFGLSGTGKTTLS 31 (318)
T ss_dssp EEEEEECTTSCHHHHT
T ss_pred EEEEEccCCCCccccc
Confidence 3589999999999964
|
| >d1ii2a1 c.91.1.1 (A:201-523) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Trypanosoma cruzi [TaxId: 5693]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: PEP carboxykinase C-terminal domain domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) species: Trypanosoma cruzi [TaxId: 5693]
Probab=88.10 E-value=0.11 Score=35.95 Aligned_cols=19 Identities=37% Similarity=0.462 Sum_probs=15.1
Q ss_pred ceeEEEEEcCCCCCHHHHH
Q 030429 11 QEMELSLIGLQNAGKTSLV 29 (177)
Q Consensus 11 ~~~~i~i~G~~~~GKSsli 29 (177)
..-.-++.|.+|+|||||.
T Consensus 13 ~gd~alfFGLSGTGKTTLs 31 (323)
T d1ii2a1 13 QGDVTVFFGLSGTGKTTLS 31 (323)
T ss_dssp TCCEEEEECCTTSSHHHHH
T ss_pred CCCEEEEEccCCCCcccce
Confidence 3334579999999999987
|
| >d1wp9a1 c.37.1.19 (A:1-200) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: putative ATP-dependent RNA helicase PF2015 species: Pyrococcus furiosus [TaxId: 2261]
Probab=86.77 E-value=0.22 Score=31.45 Aligned_cols=15 Identities=20% Similarity=0.195 Sum_probs=13.0
Q ss_pred EEEEEcCCCCCHHHH
Q 030429 14 ELSLIGLQNAGKTSL 28 (177)
Q Consensus 14 ~i~i~G~~~~GKSsl 28 (177)
++++++++|+|||..
T Consensus 25 n~lv~~pTGsGKT~i 39 (200)
T d1wp9a1 25 NCLIVLPTGLGKTLI 39 (200)
T ss_dssp CEEEECCTTSCHHHH
T ss_pred CeEEEeCCCCcHHHH
Confidence 578999999999974
|
| >d2eyqa3 c.37.1.19 (A:546-778) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Transcription-repair coupling factor, TRCF species: Escherichia coli [TaxId: 562]
Probab=86.05 E-value=0.16 Score=33.57 Aligned_cols=27 Identities=22% Similarity=0.167 Sum_probs=20.8
Q ss_pred ccccceeEEEEEcCCCCCHHHHHHHHh
Q 030429 7 LFFKQEMELSLIGLQNAGKTSLVNTIA 33 (177)
Q Consensus 7 ~~~~~~~~i~i~G~~~~GKSsli~~l~ 33 (177)
+..+.....++.|..|||||-..-+..
T Consensus 71 ~~~~~~~~~LL~GdvGsGKT~V~~~a~ 97 (233)
T d2eyqa3 71 MCQPLAMDRLVCGDVGFGKTEVAMRAA 97 (233)
T ss_dssp HHSSSCCEEEEECCCCTTTHHHHHHHH
T ss_pred HhccCccCeEEEcCCCCCcHHHHHHHH
Confidence 445566788999999999998755543
|
| >d1xbta1 c.37.1.24 (A:18-150) Thymidine kinase, TK1, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Type II thymidine kinase domain: Thymidine kinase, TK1, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=83.35 E-value=0.43 Score=28.36 Aligned_cols=18 Identities=17% Similarity=0.243 Sum_probs=14.9
Q ss_pred EEEcCCCCCHHHHHHHHh
Q 030429 16 SLIGLQNAGKTSLVNTIA 33 (177)
Q Consensus 16 ~i~G~~~~GKSsli~~l~ 33 (177)
+++|+-.|||||-+-+..
T Consensus 6 li~GpMfsGKTt~Li~~~ 23 (133)
T d1xbta1 6 VILGPMFSGKSTELMRRV 23 (133)
T ss_dssp EEECCTTSCHHHHHHHHH
T ss_pred EEEecccCHHHHHHHHHH
Confidence 678999999999866655
|
| >d5mdha1 c.2.1.5 (A:1-154) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=82.52 E-value=0.44 Score=29.00 Aligned_cols=23 Identities=13% Similarity=0.241 Sum_probs=17.1
Q ss_pred ceeEEEEEcC-CCCCHHHHHHHHhc
Q 030429 11 QEMELSLIGL-QNAGKTSLVNTIAT 34 (177)
Q Consensus 11 ~~~~i~i~G~-~~~GKSsli~~l~~ 34 (177)
+++||.++|. .++|.+... .+..
T Consensus 2 ~p~KV~IiGA~G~VG~~la~-~l~~ 25 (154)
T d5mdha1 2 EPIRVLVTGAAGQIAYSLLY-SIGN 25 (154)
T ss_dssp CCEEEEESSTTSHHHHTTHH-HHHT
T ss_pred CceEEEEECCCCHHHHHHHH-HHHH
Confidence 5789999996 778987655 4443
|
| >d1gm5a3 c.37.1.19 (A:286-549) RecG helicase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: RecG helicase domain species: Thermotoga maritima [TaxId: 2336]
Probab=82.22 E-value=0.19 Score=33.84 Aligned_cols=26 Identities=23% Similarity=0.266 Sum_probs=19.9
Q ss_pred ccccceeEEEEEcCCCCCHHHHHHHH
Q 030429 7 LFFKQEMELSLIGLQNAGKTSLVNTI 32 (177)
Q Consensus 7 ~~~~~~~~i~i~G~~~~GKSsli~~l 32 (177)
+......+-++.|..|||||-..-..
T Consensus 99 ~~~~~~m~rLL~GdvGSGKT~Va~~a 124 (264)
T d1gm5a3 99 MISEKPMNRLLQGDVGSGKTVVAQLA 124 (264)
T ss_dssp HHSSSCCCCEEECCSSSSHHHHHHHH
T ss_pred hhccCcceeeeeccccccccHHHHHH
Confidence 44566778899999999999875444
|
| >d2p6ra3 c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Hel308 helicase species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=81.86 E-value=0.14 Score=32.62 Aligned_cols=16 Identities=44% Similarity=0.316 Sum_probs=14.0
Q ss_pred eEEEEEcCCCCCHHHH
Q 030429 13 MELSLIGLQNAGKTSL 28 (177)
Q Consensus 13 ~~i~i~G~~~~GKSsl 28 (177)
-++++.+++|+|||+.
T Consensus 41 ~~~il~apTGsGKT~~ 56 (202)
T d2p6ra3 41 KNLLLAMPTAAGKTLL 56 (202)
T ss_dssp SCEEEECSSHHHHHHH
T ss_pred CCEEEEcCCCCchhHH
Confidence 4689999999999975
|
| >d1xx6a1 c.37.1.24 (A:2-142) Thymidine kinase, TK1, N-terminal domain {Clostridium acetobutylicum [TaxId: 1488]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Type II thymidine kinase domain: Thymidine kinase, TK1, N-terminal domain species: Clostridium acetobutylicum [TaxId: 1488]
Probab=81.14 E-value=0.57 Score=28.14 Aligned_cols=18 Identities=17% Similarity=0.228 Sum_probs=14.6
Q ss_pred EEEcCCCCCHHHHHHHHh
Q 030429 16 SLIGLQNAGKTSLVNTIA 33 (177)
Q Consensus 16 ~i~G~~~~GKSsli~~l~ 33 (177)
+++|+-.|||||-+-+..
T Consensus 11 lI~GpMfSGKTteLi~~~ 28 (141)
T d1xx6a1 11 VIVGPMYSGKSEELIRRI 28 (141)
T ss_dssp EEECSTTSSHHHHHHHHH
T ss_pred EEEeccccHHHHHHHHHH
Confidence 568999999999765555
|
| >d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramate-alanine ligase MurC species: Haemophilus influenzae [TaxId: 727]
Probab=80.39 E-value=0.74 Score=25.57 Aligned_cols=27 Identities=19% Similarity=0.507 Sum_probs=22.3
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcCC
Q 030429 10 KQEMELSLIGLQNAGKTSLVNTIATGG 36 (177)
Q Consensus 10 ~~~~~i~i~G~~~~GKSsli~~l~~~~ 36 (177)
++.-+|.++|-.|+|-|.|..-|....
T Consensus 6 ~~~~~ihfiGigG~GMs~LA~~L~~~G 32 (96)
T d1p3da1 6 RRVQQIHFIGIGGAGMSGIAEILLNEG 32 (96)
T ss_dssp TTCCEEEEETTTSTTHHHHHHHHHHHT
T ss_pred hhCCEEEEEEECHHHHHHHHHHHHhCC
Confidence 345689999999999999988887443
|