Citrus Sinensis ID: 030439

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------
Protein Sequence
MNVSHASVHPVEDPPTTEGGNAPRVRMKDIQGMPATPGGLALRVSQFIFAVAALCVMATTSDFPSVTAFCFLVAAAGLQSLWSLSLAIVDIYALSVMRSLQNSRIVNLFTVGDGITSTLTFAAACASAGITVLIDNDLQSCSQNHCIQFETATAMAFISWFTALPSFLLNFWSLASR
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccEEEEEEEcccHHHHHHHHHHHHHHHHHHEEccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
cccccccEccccccccccccccccEEccccccccccHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccEEEEEEEEcHHHHHHHHHHHHHHHHcHEEEEHccHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
mnvshasvhpvedpptteggnaprvrmkdiqgmpatpgglALRVSQFIFAVAALCVMattsdfpsvTAFCFLVAAAGLQSLWSLSLAIVDIYALSVMRSLQNSRIVNLFTVGDGITSTLTFAAACASAGITVLidndlqscsqnHCIQFETATAMAFISWFTALPSFLLNFWSLASR
Flexible Loop (DISEMBL)
mnvshasvhpvedpptteggnapRVRMKDIQGMPATPGGLALRVSQFIFAVAALCVMATTSDFPSVTAFCFLVAAAGLQSLWSLSLAIVDIYALSVMRSLQNSRIVNLFTVGDGITSTLTFAAACASAGITVLIDNDLQSCSQNHCIQFETATAMAFISWFTALPSFLLNFWSLASR
Low Complexity Region (SEG)
MNVSHASVHPVEDPPTTEGGNAPRVRMKDIQGMPATPGGLALRVSQFIFAVAALCVMATTSDFPSVTAFCFLVAAAGLQSLWSLSLAIVDIYALSVMRSLQNSRIVNLFTVGDGITSTLTFAAACASAGITVLIDNDLQSCSQNHCIQFETATAMAFISWFTALPSFLLNFWSLASR
Disordered region (IsUnstruct)
*************************************GGLALRVSQFIFAVAALCVMATTSDFPSVTAFCFLVAAAGLQSLWSLSLAIVDIYALSVMRSLQNSRIVNLFTVGDGITSTLTFAAACASAGITVLIDNDLQSCSQNHCIQFETATAMAFISWFTALPSFLLNFWSL***
Disordered Region (DISOPRED)
*****AS***VEDPPTTEGGNAPRVRMKDIQGMPATPGGLALRVSQFIFAVAALCVMATTSDFPSVTAFCFLVAAAGLQSLWSLSLAIVDIYALSVMRSLQNSRIVNLFTVGDGITSTLTFAAACASAGITVLIDNDLQSCSQNHCIQFETATAMAFISWFTALPSFLLNFWSLASR
Disordered Region (DISEMBL)
*******************GNAPRVRMKDIQGMPATPGGLALRVSQFIFAVAALCVMATTSDFPSVTAFCFLVAAAGLQSLWSLSLAIVDIYALSVMRSLQNSRIVNLFTVGDGITSTLTFAAACASAGITVLIDNDLQSCSQNHCIQFETATAMAFISWFTALPSFLLNFWSLASR
Disordered Region (DISPRO)
********HPVEDPPTTEGGNAPRVRMKDIQGMPATPGGLALRVSQFIFAVAALCVMATTSDFPSVTAFCFLVAAAGLQSLWSLSLAIVDIYALSVMRSLQNSRIVNLFTVGDGITSTLTFAAACASAGITVLIDNDLQSCSQNHCIQFETATAMAFISWFTALPSFLLNFWSLASR
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiii
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MNVSHASVHPVEDPPTTEGGNAPRVRMKDIQGMPATPGGLALRVSQFIFAVAALCVMATTSDFPSVTAFCFLVAAAGLQSLWSLSLAIVDIYALSVMRSLQNSRIVNLFTVGDGITSTLTFAAACASAGITVLIDNDLQSCSQNHCIQFETATAMAFISWFTALPSFLLNFWSLASR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	177	2.2.26 [Sep-21-2011]
Q9SKN3	179	CASP-like protein At2g283	yes	no	1.0	0.988	0.787	4e-74
P0DI70	176	CASP-like protein 2 OS=Gi	N/A	no	0.994	1.0	0.694	1e-65
P0DI68	178	CASP-like protein 1 OS=Br	yes	no	1.0	0.994	0.668	3e-62
P0DI69	177	CASP-like protein 1 OS=Gi	N/A	no	1.0	1.0	0.627	1e-60
P0DI27	180	CASP-like protein PtaqCon	N/A	no	0.994	0.977	0.649	5e-59
B4FNS3	190	CASP-like protein 15 OS=Z	N/A	no	1.0	0.931	0.621	7e-52
Q6NPF8	180	CASP-like protein At2g372	no	no	0.994	0.977	0.65	9e-52
D8QNI1	176	CASP-like protein SELMODR	N/A	no	0.994	1.0	0.570	2e-51
Q10Q78	178	CASP-like protein Os03g02	yes	no	0.858	0.853	0.723	5e-51
P0DI67	181	CASP-like protein 19 OS=Z	N/A	no	0.926	0.906	0.578	9e-50

>sp|Q9SKN3|CSPL6_ARATH CASP-like protein At2g28370 OS=Arabidopsis thaliana GN=At2g28370 PE=2 SV=1

 Score =  276 bits (706), Expect = 4e-74,   Method: Compositional matrix adjust.
 Identities = 141/179 (78%), Positives = 158/179 (88%), Gaps = 2/179 (1%)

Query: 1   MNVSHASVHPVEDPPT--TEGGNAPRVRMKDIQGMPATPGGLALRVSQFIFAVAALCVMA 58
           MNVSHASVHPVEDPP   TE  N PRVRM D++GMP T  GLALR  QF+FA AALCVMA
Sbjct: 1   MNVSHASVHPVEDPPAAATEVENPPRVRMDDMEGMPGTLLGLALRFFQFLFAAAALCVMA 60

Query: 59  TTSDFPSVTAFCFLVAAAGLQSLWSLSLAIVDIYALSVMRSLQNSRIVNLFTVGDGITST 118
           +TSDFPSVTAFC+LVAA GLQSLWSL+LA+VD+YA+ V RSLQN R+V+LF +GDG+TST
Sbjct: 61  STSDFPSVTAFCYLVAATGLQSLWSLALAMVDVYAIMVKRSLQNRRLVSLFAIGDGVTST 120

Query: 119 LTFAAACASAGITVLIDNDLQSCSQNHCIQFETATAMAFISWFTALPSFLLNFWSLASR 177
           LTFAAACASAGITVLIDNDL SC+QNHC+QFET+TA+AFISWF ALPSFL NFWSLASR
Sbjct: 121 LTFAAACASAGITVLIDNDLNSCAQNHCVQFETSTALAFISWFAALPSFLFNFWSLASR 179

Arabidopsis thaliana (taxid: 3702)

>sp|P0DI70|CSPL2_GINBI CASP-like protein 2 OS=Ginkgo biloba GN=gba_locus_10451 PE=3 SV=1

 Score =  248 bits (634), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 123/177 (69%), Positives = 143/177 (80%), Gaps = 1/177 (0%)

Query: 1   MNVSHASVHPVEDPPTTEGGNAPRVRMKDIQGMPATPGGLALRVSQFIFAVAALCVMATT 60
           MN SH +VHPVE PPT +  +APRVRMKD QGMP T GGLALR+ QF FAV A  +M +T
Sbjct: 1   MNPSHPAVHPVEAPPT-DVHHAPRVRMKDYQGMPGTLGGLALRLGQFCFAVVAFSIMLST 59

Query: 61  SDFPSVTAFCFLVAAAGLQSLWSLSLAIVDIYALSVMRSLQNSRIVNLFTVGDGITSTLT 120
            DF +VTAFC+LVAA  LQ LWSL+LA++D YAL V RSL+NS +V+LF VGDG+T+TLT
Sbjct: 60  DDFSTVTAFCYLVAATVLQCLWSLALAVIDGYALLVKRSLRNSLVVSLFVVGDGVTATLT 119

Query: 121 FAAACASAGITVLIDNDLQSCSQNHCIQFETATAMAFISWFTALPSFLLNFWSLASR 177
           FAAACASAGITVLI NDL+ C QNHC ++ETATAMAF+SWF   PSFLL FW LASR
Sbjct: 120 FAAACASAGITVLIGNDLRECDQNHCGKYETATAMAFLSWFMVSPSFLLTFWLLASR 176

Ginkgo biloba (taxid: 3311)

>sp|P0DI68|CSPL1_BRADI CASP-like protein 1 OS=Brachypodium distachyon PE=2 SV=1

 Score =  237 bits (604), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 119/178 (66%), Positives = 138/178 (77%), Gaps = 1/178 (0%)

Query: 1   MNVSHASVHPVEDPPTTEGGNAPR-VRMKDIQGMPATPGGLALRVSQFIFAVAALCVMAT 59
           M  S  +VHPVE PP T+    P  V MKD+ GMP T GGL LRV+QF+FA  AL VMA+
Sbjct: 1   MFASRPAVHPVEAPPPTDPVEQPTGVLMKDLPGMPGTAGGLGLRVAQFVFAGVALAVMAS 60

Query: 60  TSDFPSVTAFCFLVAAAGLQSLWSLSLAIVDIYALSVMRSLQNSRIVNLFTVGDGITSTL 119
           TSDFPSVTAFC+LVAA  +Q LWS SLAIVDIYAL V R L+N R V LF +GDGIT+ L
Sbjct: 61  TSDFPSVTAFCYLVAATIMQCLWSFSLAIVDIYALLVKRCLRNRRAVCLFAIGDGITAAL 120

Query: 120 TFAAACASAGITVLIDNDLQSCSQNHCIQFETATAMAFISWFTALPSFLLNFWSLASR 177
           TF AAC+SAGITVLIDNDL  C++NHC  F+TATA+AF+SWF   PSFLLNFWS+A+R
Sbjct: 121 TFGAACSSAGITVLIDNDLNICAENHCGSFKTATALAFMSWFALTPSFLLNFWSMAAR 178

Brachypodium distachyon (taxid: 15368)

>sp|P0DI69|CSPL1_GINBI CASP-like protein 1 OS=Ginkgo biloba GN=gba_locus_19756 PE=2 SV=1

 Score =  232 bits (591), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 111/177 (62%), Positives = 136/177 (76%)

Query: 1   MNVSHASVHPVEDPPTTEGGNAPRVRMKDIQGMPATPGGLALRVSQFIFAVAALCVMATT 60
           MN SH +VHPV  PP   G   PR+RMK+IQGMP T GGL LR+ QF FA+ A  +M + 
Sbjct: 1   MNASHPAVHPVGVPPAVAGQLPPRMRMKEIQGMPGTIGGLLLRLGQFCFALVAFSIMVSI 60

Query: 61  SDFPSVTAFCFLVAAAGLQSLWSLSLAIVDIYALSVMRSLQNSRIVNLFTVGDGITSTLT 120
            +F +VTAFC+LVAA  LQ LWSL+LAI+D YAL V RSL+NS +V+L  VGDG+T+TLT
Sbjct: 61  ENFSTVTAFCYLVAATVLQCLWSLALAIIDGYALLVKRSLRNSLLVSLLVVGDGVTATLT 120

Query: 121 FAAACASAGITVLIDNDLQSCSQNHCIQFETATAMAFISWFTALPSFLLNFWSLASR 177
           FAAACASAGITVLI NDL+ C +NHC ++ETATA+AF+SWF    SF+L FW LA+R
Sbjct: 121 FAAACASAGITVLIGNDLRQCKENHCARYETATALAFLSWFMVSLSFILTFWLLATR 177

Ginkgo biloba (taxid: 3311)

>sp|P0DI27|CSPL6_PTEAA CASP-like protein PtaqContig9166 OS=Pteridium aquilinum subsp. aquilinum GN=PtaqContig9166 PE=3 SV=1

 Score =  226 bits (577), Expect = 5e-59,   Method: Compositional matrix adjust.
 Identities = 115/177 (64%), Positives = 131/177 (74%), Gaps = 1/177 (0%)

Query: 1   MNVSHASVHPVEDPPTTEGGNAPRVRMKDIQGMPATPGGLALRVSQFIFAVAALCVMATT 60
           M VSH +VHPV  PP      A RVRMKD QGMP T GGLALR+ Q  FAV +  +M +T
Sbjct: 1   MEVSHPAVHPVAVPPVLTEPPA-RVRMKDYQGMPGTLGGLALRLGQLGFAVLSFSIMVST 59

Query: 61  SDFPSVTAFCFLVAAAGLQSLWSLSLAIVDIYALSVMRSLQNSRIVNLFTVGDGITSTLT 120
            DF  VTAFC+LVAA  LQ+LWS   A+VDIYALSV RSL +S +V LF VGDG+TSTLT
Sbjct: 60  PDFSQVTAFCYLVAATVLQTLWSSITAVVDIYALSVRRSLHHSLLVGLFAVGDGVTSTLT 119

Query: 121 FAAACASAGITVLIDNDLQSCSQNHCIQFETATAMAFISWFTALPSFLLNFWSLASR 177
           FAAACA+AGITVLIDNDL  C QNHC +FE A AMAF+SW  A PSFLL FWS  ++
Sbjct: 120 FAAACATAGITVLIDNDLDECGQNHCGRFEAAAAMAFLSWIMAAPSFLLAFWSFGNK 176

Pteridium aquilinum subsp. aquilinum (taxid: 104588)

>sp|B4FNS3|CSPLK_MAIZE CASP-like protein 15 OS=Zea mays PE=2 SV=1

 Score =  202 bits (515), Expect = 7e-52,   Method: Compositional matrix adjust.
 Identities = 118/190 (62%), Positives = 135/190 (71%), Gaps = 13/190 (6%)

Query: 1   MNVSHASVHPVEDPPT------------TEGGNAPR-VRMKDIQGMPATPGGLALRVSQF 47
           M  S  +VHPVE  P              EG   PR VRMKD  G P TP GL LR++Q 
Sbjct: 1   MRASRPAVHPVEAAPPPPAAAAEGPEAQVEGAAHPRGVRMKDPPGAPGTPAGLGLRLAQA 60

Query: 48  IFAVAALCVMATTSDFPSVTAFCFLVAAAGLQSLWSLSLAIVDIYALSVMRSLQNSRIVN 107
            FA AAL VMA+T+DFPSV+AF +LVAAA LQ LWSL LA VDIYAL V RSL+N+R V 
Sbjct: 61  FFAAAALAVMASTNDFPSVSAFSYLVAAAILQCLWSLLLAFVDIYALLVKRSLRNARAVC 120

Query: 108 LFTVGDGITSTLTFAAACASAGITVLIDNDLQSCSQNHCIQFETATAMAFISWFTALPSF 167
           +FT+GDGIT T+T  AACASAGITVLI NDL  C++NHC  FETATA+AFISWF   PS 
Sbjct: 121 IFTIGDGITGTITLGAACASAGITVLIGNDLNICAENHCASFETATALAFISWFALAPSC 180

Query: 168 LLNFWSLASR 177
           +LNFWS+ASR
Sbjct: 181 ILNFWSMASR 190

Zea mays (taxid: 4577)

>sp|Q6NPF8|CSPL9_ARATH CASP-like protein At2g37200 OS=Arabidopsis thaliana GN=At2g37200 PE=2 SV=1

 Score =  202 bits (514), Expect = 9e-52,   Method: Compositional matrix adjust.
 Identities = 117/180 (65%), Positives = 136/180 (75%), Gaps = 4/180 (2%)

Query: 1   MNVSHASVHPVED---PPTTEGGNAPRVRMKDIQGMPATPGGLALRVSQFIFAVAALCVM 57
           MNVS  ++HPV+     PT    + P VRMKD+QGMP T GGL LR+SQF+ A+ ++ VM
Sbjct: 2   MNVSRPAIHPVDALPVAPTAGAIDRPPVRMKDVQGMPGTTGGLILRLSQFVPALISVSVM 61

Query: 58  ATTSDFPSVTAFCFLVAAAGLQSLWSLSLAIVDIYALSVMRSLQNSRIVNLFTVGDGITS 117
            TTSDF S TAFC LV A  LQSLWSLSL I+D YAL V RSL+N  +V  FT+GDG+TS
Sbjct: 62  VTTSDFRSATAFCCLVLAVSLQSLWSLSLFIIDAYALLVRRSLRNHSVVQCFTIGDGVTS 121

Query: 118 TLTFAAACASAGITVLIDNDLQSCSQNHCIQFETATAMAFISWFTALPSFLLNFWSLASR 177
           TLTFAAA ASAGITVLI NDL  C+ NHC +FETATAMAFISWF   PSF+LNFWSLA+ 
Sbjct: 122 TLTFAAASASAGITVLI-NDLGQCNVNHCTRFETATAMAFISWFAVSPSFILNFWSLATH 180

Arabidopsis thaliana (taxid: 3702)

>sp|D8QNI1|CSPLH_SELML CASP-like protein SELMODRAFT_270224 OS=Selaginella moellendorffii GN=SELMODRAFT_270224 PE=2 SV=1

 Score =  201 bits (512), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 101/177 (57%), Positives = 128/177 (72%), Gaps = 1/177 (0%)

Query: 1   MNVSHASVHPVEDPPTTEGGNAPRVRMKDIQGMPATPGGLALRVSQFIFAVAALCVMATT 60
           M+ SH +V+PV  PPT      PRVRMKD +GMP+T GGL LR  QF  AV AL +M + 
Sbjct: 1   MDASHPAVYPVGVPPTAVD-PPPRVRMKDYEGMPSTLGGLVLRSGQFACAVTALSIMISI 59

Query: 61  SDFPSVTAFCFLVAAAGLQSLWSLSLAIVDIYALSVMRSLQNSRIVNLFTVGDGITSTLT 120
            DF SVTAFC+LVAA  LQ LWS+SLA+VD YAL + R+L N  +++L  +GD +TSTL+
Sbjct: 60  PDFSSVTAFCYLVAAMALQLLWSVSLAVVDGYALLLRRTLHNPVLLSLLVIGDWVTSTLS 119

Query: 121 FAAACASAGITVLIDNDLQSCSQNHCIQFETATAMAFISWFTALPSFLLNFWSLASR 177
            AAAC+SAGITVLID+DL  C+ NHC ++E A AMAF++WF    SF  +FW LA+R
Sbjct: 120 LAAACSSAGITVLIDSDLAQCAHNHCGRYEAAVAMAFLTWFLVSLSFFFSFWLLATR 176

Selaginella moellendorffii (taxid: 88036)

>sp|Q10Q78|CSPLV_ORYSJ CASP-like protein Os03g0206600 OS=Oryza sativa subsp. japonica GN=Os03g0206600 PE=2 SV=1

 Score =  200 bits (508), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 110/152 (72%), Positives = 125/152 (82%)

Query: 25  VRMKDIQGMPATPGGLALRVSQFIFAVAALCVMATTSDFPSVTAFCFLVAAAGLQSLWSL 84
           V MKD+ GMP T GGL LR++QF FA  AL VMA+T+DFPSVT+FCFLVAAA LQ LWS 
Sbjct: 26  VLMKDLPGMPGTAGGLGLRLAQFAFAAVALAVMASTNDFPSVTSFCFLVAAAILQCLWSF 85

Query: 85  SLAIVDIYALSVMRSLQNSRIVNLFTVGDGITSTLTFAAACASAGITVLIDNDLQSCSQN 144
           SLAIVDIYAL V R L+N R V LF +GDGIT+ LTF+AACAS+GITVLIDNDL  CS+N
Sbjct: 86  SLAIVDIYALLVKRCLRNRRAVCLFAIGDGITAALTFSAACASSGITVLIDNDLDLCSEN 145

Query: 145 HCIQFETATAMAFISWFTALPSFLLNFWSLAS 176
           HC  FE+ATAMAF+SWF   PSFLLNFWS+AS
Sbjct: 146 HCASFESATAMAFLSWFALSPSFLLNFWSMAS 177

Oryza sativa subsp. japonica (taxid: 39947)

>sp|P0DI67|CSPLO_MAIZE CASP-like protein 19 OS=Zea mays PE=2 SV=1

 Score =  196 bits (497), Expect = 9e-50,   Method: Compositional matrix adjust.
 Identities = 99/171 (57%), Positives = 124/171 (72%), Gaps = 7/171 (4%)

Query: 6   ASVHPVEDPPTTEGGNAPRVRMKDIQGMPATPGGLALRVSQFIFAVAALCVMATTSDFPS 65
           A  HPV+ P       AP V MKD+ GMP TPGGL LRV Q +FA  +L VM++T+DF S
Sbjct: 15  APAHPVQQP-------APGVLMKDLPGMPGTPGGLGLRVLQLLFAAISLAVMSSTADFAS 67

Query: 66  VTAFCFLVAAAGLQSLWSLSLAIVDIYALSVMRSLQNSRIVNLFTVGDGITSTLTFAAAC 125
           V+AFC+L+    LQ +WSL++AIVDIYAL V R LQN R V LF++GDGIT  ++F+ AC
Sbjct: 68  VSAFCYLITTTVLQCVWSLTVAIVDIYALLVKRCLQNRRAVTLFSIGDGITWLVSFSGAC 127

Query: 126 ASAGITVLIDNDLQSCSQNHCIQFETATAMAFISWFTALPSFLLNFWSLAS 176
           A+AGI VLID DL  CS+N C  F+TA AM F+  F+ LPSFLLNF+S+AS
Sbjct: 128 AAAGIPVLIDADLIMCSENPCASFQTAVAMGFMCCFSLLPSFLLNFYSIAS 178

Zea mays (taxid: 4577)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	177
351724133	182	uncharacterized protein LOC100527764 [Gl	1.0	0.972	0.824	3e-82
255578149	181	conserved hypothetical protein [Ricinus	1.0	0.977	0.861	7e-80
351724825	183	uncharacterized protein LOC100526963 [Gl	1.0	0.967	0.792	1e-79
427199386	179	membrane protein [Morella rubra]	1.0	0.988	0.821	5e-79
224104637	179	predicted protein [Populus trichocarpa]	1.0	0.988	0.826	2e-78
388509100	183	unknown [Lotus japonicus]	1.0	0.967	0.775	2e-77
388499830	185	unknown [Medicago truncatula]	1.0	0.956	0.762	4e-77
388515997	183	unknown [Lotus japonicus]	1.0	0.967	0.770	1e-76
224132498	179	predicted protein [Populus trichocarpa]	1.0	0.988	0.815	1e-75
297746263	265	unnamed protein product [Vitis vinifera]	1.0	0.667	0.785	2e-75

>gi|351724133|ref|NP_001237047.1| uncharacterized protein LOC100527764 [Glycine max] gi|255633140|gb|ACU16925.1| unknown [Glycine max]

 Score =  309 bits (791), Expect = 3e-82,   Method: Compositional matrix adjust.
 Identities = 150/182 (82%), Positives = 163/182 (89%), Gaps = 5/182 (2%)

Query: 1   MNVSHASVHPVEDPPTTEGG-----NAPRVRMKDIQGMPATPGGLALRVSQFIFAVAALC 55
           MNVSHASVHPVE+ PTTEGG     NAPRVRMKD+QGMP T GGL+LRVSQF+FA AAL 
Sbjct: 1   MNVSHASVHPVEEAPTTEGGGDQNVNAPRVRMKDVQGMPGTAGGLSLRVSQFVFAAAALS 60

Query: 56  VMATTSDFPSVTAFCFLVAAAGLQSLWSLSLAIVDIYALSVMRSLQNSRIVNLFTVGDGI 115
           +MA+TSDFPSVTAFC+LVAAAGLQ+LWS SLAI D+YAL V RSLQN RIV+LFTVGDG+
Sbjct: 61  IMASTSDFPSVTAFCYLVAAAGLQALWSFSLAITDVYALLVRRSLQNYRIVSLFTVGDGV 120

Query: 116 TSTLTFAAACASAGITVLIDNDLQSCSQNHCIQFETATAMAFISWFTALPSFLLNFWSLA 175
           TSTLTFAAACASAGITVLIDNDL SCSQNHC+QFETAT MAF+ WFT LPSFLLNFWSLA
Sbjct: 121 TSTLTFAAACASAGITVLIDNDLGSCSQNHCVQFETATGMAFLCWFTTLPSFLLNFWSLA 180

Query: 176 SR 177
           SR
Sbjct: 181 SR 182

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255578149|ref|XP_002529944.1| conserved hypothetical protein [Ricinus communis] gi|223530574|gb|EEF32452.1| conserved hypothetical protein [Ricinus communis]

 Score =  301 bits (771), Expect = 7e-80,   Method: Compositional matrix adjust.
 Identities = 156/181 (86%), Positives = 165/181 (91%), Gaps = 4/181 (2%)

Query: 1   MNVSHASVHPVEDPPTTEGG----NAPRVRMKDIQGMPATPGGLALRVSQFIFAVAALCV 56
           MNVSHASVHPVEDPPTT+GG    N PRVRMKDIQGMP T GGLALRV QFIFA AAL V
Sbjct: 1   MNVSHASVHPVEDPPTTDGGINNNNVPRVRMKDIQGMPGTKGGLALRVFQFIFAAAALAV 60

Query: 57  MATTSDFPSVTAFCFLVAAAGLQSLWSLSLAIVDIYALSVMRSLQNSRIVNLFTVGDGIT 116
           MATTSDFPSVTAFC+LVAAAGLQ LWSL+LAIVDIYAL VMRSLQN R+V+LF VGDGIT
Sbjct: 61  MATTSDFPSVTAFCYLVAAAGLQFLWSLTLAIVDIYALLVMRSLQNYRVVSLFAVGDGIT 120

Query: 117 STLTFAAACASAGITVLIDNDLQSCSQNHCIQFETATAMAFISWFTALPSFLLNFWSLAS 176
           STL FAAACASAGITVLIDNDL SC++NHC+QFETATAMAFISWF+ALPSFLLNFWSLAS
Sbjct: 121 STLIFAAACASAGITVLIDNDLGSCAENHCVQFETATAMAFISWFSALPSFLLNFWSLAS 180

Query: 177 R 177
           R
Sbjct: 181 R 181

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351724825|ref|NP_001236559.1| uncharacterized protein LOC100526963 [Glycine max] gi|255631260|gb|ACU15997.1| unknown [Glycine max]

 Score =  300 bits (769), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 145/183 (79%), Positives = 162/183 (88%), Gaps = 6/183 (3%)

Query: 1   MNVSHASVHPVEDPPTTEGG------NAPRVRMKDIQGMPATPGGLALRVSQFIFAVAAL 54
           MNVSHASVHPVE+ PTTEGG      NAPRVRMKDIQGMP T GGL+LRVS+F+FA AAL
Sbjct: 1   MNVSHASVHPVEEAPTTEGGGADQNVNAPRVRMKDIQGMPGTAGGLSLRVSRFVFAAAAL 60

Query: 55  CVMATTSDFPSVTAFCFLVAAAGLQSLWSLSLAIVDIYALSVMRSLQNSRIVNLFTVGDG 114
            +MA+TSDF SVTAFC+LVAAAGLQ++WS SLAI D+YAL V RSLQN RIV+LFT+GDG
Sbjct: 61  SIMASTSDFLSVTAFCYLVAAAGLQAMWSFSLAITDVYALLVRRSLQNYRIVSLFTIGDG 120

Query: 115 ITSTLTFAAACASAGITVLIDNDLQSCSQNHCIQFETATAMAFISWFTALPSFLLNFWSL 174
           +TSTLTFAAACASAGIT+LIDNDL +CSQNHC+QFETAT MAFI WFT +PSFLLNFWSL
Sbjct: 121 VTSTLTFAAACASAGITILIDNDLGNCSQNHCVQFETATGMAFICWFTTVPSFLLNFWSL 180

Query: 175 ASR 177
           ASR
Sbjct: 181 ASR 183

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|427199386|gb|AFY26899.1| membrane protein [Morella rubra]

 Score =  298 bits (763), Expect = 5e-79,   Method: Compositional matrix adjust.
 Identities = 147/179 (82%), Positives = 158/179 (88%), Gaps = 2/179 (1%)

Query: 1   MNVSHASVHPVEDPPTTEGG--NAPRVRMKDIQGMPATPGGLALRVSQFIFAVAALCVMA 58
           MNV+H++VHPVED PT EGG  N PRVRMK++QGMP TPGGLALRV QF+FAV ALCVMA
Sbjct: 1   MNVTHSAVHPVEDLPTAEGGGGNPPRVRMKNLQGMPGTPGGLALRVFQFVFAVGALCVMA 60

Query: 59  TTSDFPSVTAFCFLVAAAGLQSLWSLSLAIVDIYALSVMRSLQNSRIVNLFTVGDGITST 118
           TTSDF SVTAFC+LVAAA LQSLWS SLAI DIYAL V RSLQN ++V+LFTVGDGITST
Sbjct: 61  TTSDFASVTAFCYLVAAASLQSLWSFSLAITDIYALLVKRSLQNRQVVSLFTVGDGITST 120

Query: 119 LTFAAACASAGITVLIDNDLQSCSQNHCIQFETATAMAFISWFTALPSFLLNFWSLASR 177
           LTFAAACASAGITVLIDNDL  CSQNHC  FETAT MAFISWF ALPSF+LNFWSLASR
Sbjct: 121 LTFAAACASAGITVLIDNDLGVCSQNHCANFETATGMAFISWFAALPSFILNFWSLASR 179

Source: Morella rubra

Species: Morella rubra

Genus: Morella

Family: Myricaceae

Order: Fagales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224104637|ref|XP_002313509.1| predicted protein [Populus trichocarpa] gi|222849917|gb|EEE87464.1| predicted protein [Populus trichocarpa]

 Score =  296 bits (758), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 148/179 (82%), Positives = 158/179 (88%), Gaps = 2/179 (1%)

Query: 1   MNVSHASVHPVEDPPTTEGGN--APRVRMKDIQGMPATPGGLALRVSQFIFAVAALCVMA 58
           M+VSHAS+HPVEDP TT+GGN  APRVRMKDIQGMP T GGLALR+SQFIFA  AL VMA
Sbjct: 1   MSVSHASIHPVEDPTTTDGGNNNAPRVRMKDIQGMPGTKGGLALRLSQFIFAATALSVMA 60

Query: 59  TTSDFPSVTAFCFLVAAAGLQSLWSLSLAIVDIYALSVMRSLQNSRIVNLFTVGDGITST 118
           +TSDFPSVTAF +LV AA LQ LWSL LAIVDIYAL VMRSLQN RIV  F VGDGI ST
Sbjct: 61  STSDFPSVTAFTYLVVAASLQCLWSLCLAIVDIYALLVMRSLQNYRIVITFAVGDGIAST 120

Query: 119 LTFAAACASAGITVLIDNDLQSCSQNHCIQFETATAMAFISWFTALPSFLLNFWSLASR 177
           LTFAAACASAGITVLI+NDL SC+ NHC+QFETATAMAFISWF+ALPSFLLNFWSLASR
Sbjct: 121 LTFAAACASAGITVLINNDLDSCANNHCLQFETATAMAFISWFSALPSFLLNFWSLASR 179

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388509100|gb|AFK42616.1| unknown [Lotus japonicus]

 Score =  293 bits (750), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 142/183 (77%), Positives = 158/183 (86%), Gaps = 6/183 (3%)

Query: 1   MNVSHASVHPVEDPPTTEGG------NAPRVRMKDIQGMPATPGGLALRVSQFIFAVAAL 54
           MNVSHASVHPV+  PTTE G      N PRVRMKDIQGMP T GGLALRVSQF+FA AAL
Sbjct: 1   MNVSHASVHPVDAVPTTEAGGADQNANVPRVRMKDIQGMPGTVGGLALRVSQFVFAAAAL 60

Query: 55  CVMATTSDFPSVTAFCFLVAAAGLQSLWSLSLAIVDIYALSVMRSLQNSRIVNLFTVGDG 114
            +MA+T+DFPSVTAFC+LVAAAGLQ+LWS  LAIVD+YA+ V RSLQN R++ LFT+GDG
Sbjct: 61  SIMASTNDFPSVTAFCYLVAAAGLQALWSFILAIVDVYAILVRRSLQNYRVLGLFTIGDG 120

Query: 115 ITSTLTFAAACASAGITVLIDNDLQSCSQNHCIQFETATAMAFISWFTALPSFLLNFWSL 174
           +TSTL FAAACASAGITVLIDNDL SC++NHC+QFETAT MAFI WFT LPSFLLNFWSL
Sbjct: 121 VTSTLVFAAACASAGITVLIDNDLGSCAKNHCVQFETATGMAFICWFTTLPSFLLNFWSL 180

Query: 175 ASR 177
           ASR
Sbjct: 181 ASR 183

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388499830|gb|AFK37981.1| unknown [Medicago truncatula]

 Score =  292 bits (747), Expect = 4e-77,   Method: Compositional matrix adjust.
 Identities = 141/185 (76%), Positives = 160/185 (86%), Gaps = 8/185 (4%)

Query: 1   MNVSHASVHPVEDPPTTEGG--------NAPRVRMKDIQGMPATPGGLALRVSQFIFAVA 52
           MNVSHAS+HPVE+ PTT+GG        N P VRMKDIQGMP T GGLALRVSQF+FA A
Sbjct: 1   MNVSHASIHPVEEVPTTDGGVAVAEQNVNVPMVRMKDIQGMPGTIGGLALRVSQFVFAAA 60

Query: 53  ALCVMATTSDFPSVTAFCFLVAAAGLQSLWSLSLAIVDIYALSVMRSLQNSRIVNLFTVG 112
           AL VMA+TSDFPSVTAFCFLVAAAGLQ+LWS++LAI D+YA+ V RSLQN R+V+ FT+G
Sbjct: 61  ALSVMASTSDFPSVTAFCFLVAAAGLQTLWSIALAITDVYAILVRRSLQNYRLVSSFTIG 120

Query: 113 DGITSTLTFAAACASAGITVLIDNDLQSCSQNHCIQFETATAMAFISWFTALPSFLLNFW 172
           DG+TSTL FAAACASAGITVLIDNDL +C++NHC+QFETAT MAFI WFT +PSFLLNFW
Sbjct: 121 DGVTSTLIFAAACASAGITVLIDNDLGNCNENHCVQFETATGMAFICWFTTVPSFLLNFW 180

Query: 173 SLASR 177
           SLASR
Sbjct: 181 SLASR 185

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388515997|gb|AFK46060.1| unknown [Lotus japonicus]

 Score =  290 bits (743), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 141/183 (77%), Positives = 157/183 (85%), Gaps = 6/183 (3%)

Query: 1   MNVSHASVHPVEDPPTTEGG------NAPRVRMKDIQGMPATPGGLALRVSQFIFAVAAL 54
           MNVSHASVHPV+  PTTE G      N PRVRMKDIQGM  T GGLALRVSQF+FA AAL
Sbjct: 1   MNVSHASVHPVDAVPTTEAGGADQNANVPRVRMKDIQGMSGTVGGLALRVSQFVFAAAAL 60

Query: 55  CVMATTSDFPSVTAFCFLVAAAGLQSLWSLSLAIVDIYALSVMRSLQNSRIVNLFTVGDG 114
            +MA+T+DFPSVTAFC+LVAAAGLQ+LWS  LAIVD+YA+ V RSLQN R++ LFT+GDG
Sbjct: 61  SIMASTNDFPSVTAFCYLVAAAGLQALWSFILAIVDVYAILVRRSLQNYRVLGLFTIGDG 120

Query: 115 ITSTLTFAAACASAGITVLIDNDLQSCSQNHCIQFETATAMAFISWFTALPSFLLNFWSL 174
           +TSTL FAAACASAGITVLIDNDL SC++NHC+QFETAT MAFI WFT LPSFLLNFWSL
Sbjct: 121 VTSTLVFAAACASAGITVLIDNDLGSCAKNHCVQFETATGMAFICWFTTLPSFLLNFWSL 180

Query: 175 ASR 177
           ASR
Sbjct: 181 ASR 183

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224132498|ref|XP_002328299.1| predicted protein [Populus trichocarpa] gi|222837814|gb|EEE76179.1| predicted protein [Populus trichocarpa]

 Score =  287 bits (735), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 146/179 (81%), Positives = 155/179 (86%), Gaps = 2/179 (1%)

Query: 1   MNVSHASVHPVEDPPTTEGGN--APRVRMKDIQGMPATPGGLALRVSQFIFAVAALCVMA 58
           M+VSHAS+HPVEDP TT+GGN  AP VRMKDIQGMP T GGLALR+SQF+FAV AL VMA
Sbjct: 1   MSVSHASIHPVEDPTTTDGGNNNAPGVRMKDIQGMPGTKGGLALRLSQFVFAVTALSVMA 60

Query: 59  TTSDFPSVTAFCFLVAAAGLQSLWSLSLAIVDIYALSVMRSLQNSRIVNLFTVGDGITST 118
           +TSDF SVTAF +LVAAA LQ LWSL LAIVDIYAL VMRSLQN RIV  F VGDGI ST
Sbjct: 61  STSDFASVTAFTYLVAAASLQCLWSLCLAIVDIYALLVMRSLQNYRIVISFAVGDGIAST 120

Query: 119 LTFAAACASAGITVLIDNDLQSCSQNHCIQFETATAMAFISWFTALPSFLLNFWSLASR 177
            TFAAACASAGITVLIDNDL SC  NHC+QFETATAMAFIS F+ALPSFLLNFWSLASR
Sbjct: 121 FTFAAACASAGITVLIDNDLDSCDDNHCLQFETATAMAFISCFSALPSFLLNFWSLASR 179

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297746263|emb|CBI16319.3| unnamed protein product [Vitis vinifera]

 Score =  286 bits (732), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 139/177 (78%), Positives = 152/177 (85%)

Query: 1   MNVSHASVHPVEDPPTTEGGNAPRVRMKDIQGMPATPGGLALRVSQFIFAVAALCVMATT 60
           MNVSHASVHPVEDPP T+  NAPRVRMKD QG P T GGL+LR  QF+FA  ALCVM TT
Sbjct: 89  MNVSHASVHPVEDPPPTDAINAPRVRMKDFQGTPGTTGGLSLRCCQFLFAAIALCVMVTT 148

Query: 61  SDFPSVTAFCFLVAAAGLQSLWSLSLAIVDIYALSVMRSLQNSRIVNLFTVGDGITSTLT 120
           SDF SVTAFC+LVAA GLQSLWSLSLAI+DIYALSV R LQN ++V LFT+GDGITSTLT
Sbjct: 149 SDFSSVTAFCYLVAAVGLQSLWSLSLAILDIYALSVKRCLQNYQVVALFTIGDGITSTLT 208

Query: 121 FAAACASAGITVLIDNDLQSCSQNHCIQFETATAMAFISWFTALPSFLLNFWSLASR 177
           FAAACASAGITVLI NDL SC+ N+C++FETAT +AF SWF  LPSFLLNFWSLASR
Sbjct: 209 FAAACASAGITVLIGNDLNSCAHNNCLEFETATTLAFFSWFAVLPSFLLNFWSLASR 265

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	177
TAIR|locus:2057497	179	AT2G28370 "AT2G28370" [Arabido	1.0	0.988	0.787	9.6e-73
TAIR|locus:2061743	180	AT2G37200 "AT2G37200" [Arabido	0.988	0.972	0.659	3.3e-56
TAIR|locus:2086258	152	AT3G23200 "AT3G23200" [Arabido	0.847	0.986	0.483	9.8e-32
TAIR|locus:2084445	154	AT3G53850 "AT3G53850" [Arabido	0.847	0.974	0.450	2.6e-31
TAIR|locus:2185103	152	AT5G02060 "AT5G02060" [Arabido	0.836	0.973	0.437	4.4e-29
TAIR|locus:2077962	154	AT3G50810 "AT3G50810" [Arabido	0.847	0.974	0.370	1.6e-22
TAIR|locus:504956317	152	AT1G49405 "AT1G49405" [Arabido	0.847	0.986	0.34	5.5e-22
TAIR|locus:1006230287	152	AT4G37235 "AT4G37235" [Arabido	0.774	0.901	0.307	2.3e-16

TAIR|locus:2057497 AT2G28370 "AT2G28370" [Arabidopsis thaliana (taxid:3702)]

 Score = 735 (263.8 bits), Expect = 9.6e-73, P = 9.6e-73
 Identities = 141/179 (78%), Positives = 158/179 (88%)

Query:     1 MNVSHASVHPVEDPPT--TEGGNAPRVRMKDIQGMPATPGGLALRVSQFIFAVAALCVMA 58
             MNVSHASVHPVEDPP   TE  N PRVRM D++GMP T  GLALR  QF+FA AALCVMA
Sbjct:     1 MNVSHASVHPVEDPPAAATEVENPPRVRMDDMEGMPGTLLGLALRFFQFLFAAAALCVMA 60

Query:    59 TTSDFPSVTAFCFLVAAAGLQSLWSLSLAIVDIYALSVMRSLQNSRIVNLFTVGDGITST 118
             +TSDFPSVTAFC+LVAA GLQSLWSL+LA+VD+YA+ V RSLQN R+V+LF +GDG+TST
Sbjct:    61 STSDFPSVTAFCYLVAATGLQSLWSLALAMVDVYAIMVKRSLQNRRLVSLFAIGDGVTST 120

Query:   119 LTFAAACASAGITVLIDNDLQSCSQNHCIQFETATAMAFISWFTALPSFLLNFWSLASR 177
             LTFAAACASAGITVLIDNDL SC+QNHC+QFET+TA+AFISWF ALPSFL NFWSLASR
Sbjct:   121 LTFAAACASAGITVLIDNDLNSCAQNHCVQFETSTALAFISWFAALPSFLFNFWSLASR 179

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0005886 "plasma membrane" evidence=IDA

GO:0000902 "cell morphogenesis" evidence=RCA

GO:0006661 "phosphatidylinositol biosynthetic process" evidence=RCA

GO:0016049 "cell growth" evidence=RCA

GO:0048193 "Golgi vesicle transport" evidence=RCA

TAIR|locus:2061743 AT2G37200 "AT2G37200" [Arabidopsis thaliana (taxid:3702)]

 Score = 579 (208.9 bits), Expect = 3.3e-56, P = 3.3e-56
 Identities = 118/179 (65%), Positives = 137/179 (76%)

Query:     1 MNVSHASVHPVEDPPT--TEGG-NAPRVRMKDIQGMPATPGGLALRVSQFIFAVAALCVM 57
             MNVS  ++HPV+  P   T G  + P VRMKD+QGMP T GGL LR+SQF+ A+ ++ VM
Sbjct:     2 MNVSRPAIHPVDALPVAPTAGAIDRPPVRMKDVQGMPGTTGGLILRLSQFVPALISVSVM 61

Query:    58 ATTSDFPSVTAFCFLVAAAGLQSLWSLSLAIVDIYALSVMRSLQNSRIVNLFTVGDGITS 117
              TTSDF S TAFC LV A  LQSLWSLSL I+D YAL V RSL+N  +V  FT+GDG+TS
Sbjct:    62 VTTSDFRSATAFCCLVLAVSLQSLWSLSLFIIDAYALLVRRSLRNHSVVQCFTIGDGVTS 121

Query:   118 TLTFAAACASAGITVLIDNDLQSCSQNHCIQFETATAMAFISWFTALPSFLLNFWSLAS 176
             TLTFAAA ASAGITVLI NDL  C+ NHC +FETATAMAFISWF   PSF+LNFWSLA+
Sbjct:   122 TLTFAAASASAGITVLI-NDLGQCNVNHCTRFETATAMAFISWFAVSPSFILNFWSLAT 179

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0016020 "membrane" evidence=ISS

TAIR|locus:2086258 AT3G23200 "AT3G23200" [Arabidopsis thaliana (taxid:3702)]

 Score = 348 (127.6 bits), Expect = 9.8e-32, P = 9.8e-32
 Identities = 73/151 (48%), Positives = 98/151 (64%)

Query:    27 MKDIQGMPATPGGLALRVSQFIFAVAALCVMATTSDFPSVTAFCFLVAAAGLQSLWSLSL 86
             M DI G P T  GL LR+SQ +FA  ++  M T+  F S TAFC+L+AA GLQ +WS  L
Sbjct:     1 MIDIPGTPGTLTGLVLRISQCVFAAGSISYMVTSGGFFSFTAFCYLIAAMGLQVIWSFGL 60

Query:    87 AIVDIYALSVMRSLQNSRIVNLFTVGDGITSTLTFAAACASAGITVLIDNDLQSCS-QNH 145
             AI+D +AL   ++L +  +V+LF VGD +TSTL+ A A +SAGITVL   DL SCS +  
Sbjct:    61 AILDTFALVRKKTLLSPVLVSLFVVGDWVTSTLSLAGASSSAGITVLYFGDLGSCSFEAE 120

Query:   146 CIQFETATAMAFISWFTALPSFLLNFWSLAS 176
             C +++ + A+AF+ W T   S L   W LAS
Sbjct:   121 CWKYQLSVALAFLCWITIAVSSLTTLWLLAS 151

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2084445 AT3G53850 "AT3G53850" [Arabidopsis thaliana (taxid:3702)]

 Score = 344 (126.2 bits), Expect = 2.6e-31, P = 2.6e-31
 Identities = 69/153 (45%), Positives = 99/153 (64%)

Query:    27 MKDIQGMPATPGGLALRVSQFIFAVAALCVMATTSDFPSVTAFCFLVAAAGLQSLWSLSL 86
             MK + G P T  GL LR+ Q   A A++ VM +  +F   TAFC+L+A+ GLQ LWS  L
Sbjct:     1 MKKLLGGPGTVCGLLLRIGQCASAAASIGVMVSAKEFSVHTAFCYLIASMGLQLLWSFGL 60

Query:    87 AIVDIYALSVMRSLQNSRIVNLFTVGDGITSTLTFAAACASAGITVLIDNDLQSC---SQ 143
             A +D+YAL   + LQN  +V+LF VGD +T+ L+ AAAC+SAG+ VL + D++ C   SQ
Sbjct:    61 ACLDVYALRGKKDLQNPILVSLFVVGDWVTAMLSLAAACSSAGVVVLYEKDIKYCNTQSQ 120

Query:   144 NHCIQFETATAMAFISWFTALPSFLLNFWSLAS 176
               C+++E A A++F++W     S  + FW LAS
Sbjct:   121 YPCLRYEVAVALSFVTWIQIAVSSHVTFWILAS 153

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2185103 AT5G02060 "AT5G02060" [Arabidopsis thaliana (taxid:3702)]

 Score = 323 (118.8 bits), Expect = 4.4e-29, P = 4.4e-29
 Identities = 66/151 (43%), Positives = 94/151 (62%)

Query:    27 MKDIQGMPATPGGLALRVSQFIFAVAALCVMATTSDFPSVTAFCFLVAAAGLQSLWSLSL 86
             MK + G P T  GL LR+ Q   A A++ VM ++ DF + TAFCFLVA+ GLQ +WS  L
Sbjct:     1 MKKMIGSPGTMSGLILRLGQCATAAASIGVMVSSYDFSNYTAFCFLVASMGLQLIWSFGL 60

Query:    87 AIVDIYALSVMRSLQNSRIVNLFTVGDGITSTLTFAAACASAGITVLIDNDLQSCSQN-- 144
             A +D+YA+     L++  +++LFTVGD +T+ L  AAAC+SAG+TVL   D + C Q   
Sbjct:    61 ACLDVYAIRRKSDLRSPILLSLFTVGDWVTALLALAAACSSAGVTVLFTKDTEFCRQQPA 120

Query:   145 -HCIQFETATAMAFISWFTALPSFLLNFWSL 174
               C +F+ +  ++F +WF A  S    FW L
Sbjct:   121 LSCDRFQISVGLSFFNWFLAAISSHTMFWIL 151

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0016020 "membrane" evidence=ISS

TAIR|locus:2077962 AT3G50810 "AT3G50810" [Arabidopsis thaliana (taxid:3702)]

 Score = 261 (96.9 bits), Expect = 1.6e-22, P = 1.6e-22
 Identities = 56/151 (37%), Positives = 82/151 (54%)

Query:    27 MKDIQGMPATPGGLALRVSQFIFAVAALCVMATTSDFPSVTAFCFLVAAAGLQSLWSLSL 86
             M+ + G   T    ALR  Q IF+ A+L  M    DF   T FC+L     + + WS+ L
Sbjct:     1 MEHVPGSFGTSASFALRFGQTIFSAASLIFMCFDFDFYDFTTFCYLAMVMAIVTPWSILL 60

Query:    87 AIVDIYALSVMRSLQNSRIVNLFTVGDGITSTLTFAAACASAGITVLIDN-DLQSCSQNH 145
             A+ D Y++ V    Q  R++++   GD + S L+   ACA A  T L+ + D + C  + 
Sbjct:    61 ALTDTYSVLVKLLPQELRVLSIVFAGDFVLSFLSLGGACAVASATELLASADGKICDGSL 120

Query:   146 CIQFETATAMAFISWFTALPSFLLNFWSLAS 176
             CIQ++ + A+AF+ WF  L S L NFWSL S
Sbjct:   121 CIQYQVSAALAFLCWFLLLASALFNFWSLPS 151

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0016020 "membrane" evidence=ISS

TAIR|locus:504956317 AT1G49405 "AT1G49405" [Arabidopsis thaliana (taxid:3702)]

 Score = 256 (95.2 bits), Expect = 5.5e-22, P = 5.5e-22
 Identities = 51/150 (34%), Positives = 83/150 (55%)

Query:    27 MKDIQGMPATPGGLALRVSQFIFAVAALCVMATTSDFPSVTAFCFLVAAAGLQSLWSLSL 86
             M ++ G   T   L+LR+ Q + A  +L  M     F   TAFC+LV    L   W+L+L
Sbjct:     1 MVEVPGSVGTTASLSLRLGQMVLAFGSLLFMTIGVRFYQFTAFCYLVTIMSLAIPWNLTL 60

Query:    87 AIVDIYALSVMRSLQNSRIVNLFTVGDGITSTLTFAAACASAGITVLIDNDLQSCSQNHC 146
             A+VDIY + + +  Q  RI+   ++GD + S L  A+A ++A +  ++ ++  SC    C
Sbjct:    61 AMVDIYCVILQQPFQKPRILLAISIGDWVVSVLALASASSAASVVDILRSNESSCPPTIC 120

Query:   147 IQFETATAMAFISWFTALPSFLLNFWSLAS 176
              +++ A  +AF++WF +L S L N W L S
Sbjct:   121 NRYQFAATLAFLTWFLSLSSSLFNLWLLPS 150

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0016020 "membrane" evidence=ISS

TAIR|locus:1006230287 AT4G37235 "AT4G37235" [Arabidopsis thaliana (taxid:3702)]

 Score = 203 (76.5 bits), Expect = 2.3e-16, P = 2.3e-16
 Identities = 44/143 (30%), Positives = 76/143 (53%)

Query:    36 TPGGLALRVSQFIFAVAALCVMATTSD--FPSVTAFCFLVAAAGLQSLWSLSLAIVDIYA 93
             T     LR+ Q +F+ A+L  M    D  F + T FC+LV   GL + WS++LA+++ Y+
Sbjct:    10 TSSSFVLRLGQTLFSSASLLFMCFNDDEDFYAYTTFCYLVTVMGLVTPWSVTLALMEAYS 69

Query:    94 LSVMRSLQNSRIVNLFTVGDGITSTLTFAAACASAGITVLIDNDLQSCSQNHCIQFETAT 153
             + V +    + ++++   GD + S L+   AC++A + VL    L    +  C +++ + 
Sbjct:    70 ILVKKLPMQATVISVIVAGDFVLSFLSLGGACSTASVAVL----LMDAGEKQCDRYKLSA 125

Query:   154 AMAFISWFTALPSFLLNFWSLAS 176
              MAF+S F +  S   NF  L S
Sbjct:   126 TMAFLSSFLSFASTFFNFCLLPS 148


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.324   0.132   0.399    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      177       177   0.00084  109 3  11 22  0.47    31
                                                     31  0.50    34


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  8
  No. of states in DFA:  583 (62 KB)
  Total size of DFA:  152 KB (2092 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  16.63u 0.17s 16.80t   Elapsed:  00:00:00
  Total cpu time:  16.63u 0.17s 16.80t   Elapsed:  00:00:00
  Start:  Sat May 11 01:18:49 2013   End:  Sat May 11 01:18:49 2013

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
B4FNS3	CSPLK_MAIZE	No assigned EC number	0.6210	1.0	0.9315	N/A	no
A9RKK4	CSPLF_PHYPA	No assigned EC number	0.5780	0.9774	0.9664	N/A	no
P0DI64	CSPL1_PINCO	No assigned EC number	0.5513	0.9887	0.9459	N/A	no
P0DI70	CSPL2_GINBI	No assigned EC number	0.6949	0.9943	1.0	N/A	no
P0DI71	CSPL3_GINBI	No assigned EC number	0.5168	1.0	0.9943	N/A	no
A9NYX5	CSPLA_PICSI	No assigned EC number	0.5567	0.9887	0.9459	N/A	no
Q9SKN3	CSPL6_ARATH	No assigned EC number	0.7877	1.0	0.9888	yes	no
Q10Q78	CSPLV_ORYSJ	No assigned EC number	0.7236	0.8587	0.8539	yes	no
P0DI27	CSPL6_PTEAA	No assigned EC number	0.6497	0.9943	0.9777	N/A	no
P0DI69	CSPL1_GINBI	No assigned EC number	0.6271	1.0	1.0	N/A	no
P0DI68	CSPL1_BRADI	No assigned EC number	0.6685	1.0	0.9943	yes	no
P0DI65	CSPLL_MAIZE	No assigned EC number	0.6	0.8474	0.9803	N/A	no
A9RLK6	CSPLG_PHYPA	No assigned EC number	0.5625	0.9774	0.9505	N/A	no
P0DI67	CSPLO_MAIZE	No assigned EC number	0.5789	0.9265	0.9060	N/A	no
P0DI66	CSPLM_MAIZE	No assigned EC number	0.5730	0.9265	0.9060	N/A	no
D8QNI1	CSPLH_SELML	No assigned EC number	0.5706	0.9943	1.0	N/A	no
A2Z669	CSPLT_ORYSI	No assigned EC number	0.7179	0.8757	0.7635	N/A	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: fgenesh4_pm.C_LG_IX000690 hypothetical protein (179 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	177
pfam04535	150	pfam04535, DUF588, Domain of unknown function (DUF	1e-21

>gnl|CDD|218134 pfam04535, DUF588, Domain of unknown function (DUF588)

 Score = 85.5 bits (212), Expect = 1e-21
 Identities = 38/150 (25%), Positives = 67/150 (44%), Gaps = 21/150 (14%)

Query: 32  GMPATPGGLALRVSQFIFAVAALCVMATTSD------------FPSVTAFCFLVAAAGLQ 79
           G P     L LR++ F+ A+AA  VM T               F  + AF +LV A  + 
Sbjct: 1   GRPLRLAELVLRLAAFVLALAAAVVMGTNKQTKPFFFIQKKASFSDLPAFRYLVVANAIA 60

Query: 80  SLWSLSLAIVDIYALSVMRSLQNSRIVNLFTVGDGITSTLTFAAACASAGITVLI----- 134
           + +SL   ++ +Y L   +  +   +  L  + D + + L  AAA A+A I  L      
Sbjct: 61  AGYSLLQLVLSVYLL-SRKKPRTKGLAWLLFILDQVMAYLLLAAASAAAAIVYLARNGNS 119

Query: 135 -DNDLQSCSQNH--CIQFETATAMAFISWF 161
             N ++ C+Q    C +   + A++F+++ 
Sbjct: 120 HANWMKICNQFGRFCNRAAASVALSFLAFL 149

This family of plant proteins contains a domain that may have a catalytic activity. It has a conserved arginine and aspartate that could form an active site. These proteins are predicted to contain 3 or 4 transmembrane helices. Length = 150

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	177
PF04535	149	DUF588: Domain of unknown function (DUF588); Inter	99.95
TIGR01569	154	A_tha_TIGR01569 plant integral membrane protein TI	99.84
PF01284	144	MARVEL: Membrane-associating domain; InterPro: IPR	98.83

>PF04535 DUF588: Domain of unknown function (DUF588); InterPro: IPR006702 This family of plant proteins contains a domain that may have a catalytic activity

Probab=99.95  E-value=1.9e-27  Score=187.58  Aligned_cols=128  Identities=30%  Similarity=0.476  Sum_probs=119.0

Q ss_pred             CCCcchhhHHHHHHHHHHHHHHHHHhCCC------------CCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC
Q 030439           34 PATPGGLALRVSQFIFAVAALCVMATTSD------------FPSVTAFCFLVAAAGLQSLWSLSLAIVDIYALSVMRSLQ  101 (177)
Q Consensus        34 pGt~~~L~LR~~q~~fa~~Sl~vM~s~~~------------F~s~taF~YLva~~~Lq~lWS~~la~~diyall~k~~l~  101 (177)
                      +++..+++||+.|++++++|+++|++++|            |+++++|+|+|++|++++.||+.+++.++|.+.+|+ .+
T Consensus         2 ~~~~~~l~LR~~~~~~sl~a~~vm~t~~qt~~~~~~~~~~~f~~~~af~ylv~a~~i~~~Ysl~~~~~~~~~~~~~~-~~   80 (149)
T PF04535_consen    2 SLRIASLVLRLLAFVLSLAALAVMATNKQTVSVFSIQFTAKFSDYPAFRYLVAANVIACVYSLLQLVLSIYSLSRGK-LR   80 (149)
T ss_pred             CchhhhHHHHHHHHHHHHHHHHHHHhcCCcceeeccccceeecccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC-Cc
Confidence            56778999999999999999999999988            999999999999999999999999999999999998 77


Q ss_pred             ccceEEEEEEchhHHHHHHHhhhhhhhhhHHhhhccC------CCCCccc--chHHHHHHHHHHHHHHH
Q 030439          102 NSRIVNLFTVGDGITSTLTFAAACASAGITVLIDNDL------QSCSQNH--CIQFETATAMAFISWFT  162 (177)
Q Consensus       102 ~~~~~~lf~vGD~V~a~L~~aAAsAsAgitvL~~~d~------~~C~~~~--C~~~~~SiamAFlsw~~  162 (177)
                      ++...++++++||+++||+++|++|+++++.+.++|.      +.|....  |+|+++|++++|++|++
T Consensus        81 ~~~~~~~~f~~Dqv~~~ll~sa~~Aa~~~~~~~~~g~~~~~W~~vC~~~~~FC~~~~~sv~lsf~a~~~  149 (149)
T PF04535_consen   81 SKLLAWFLFILDQVLAYLLFSAASAAAAVAYLGKKGNSHVQWSKVCSQFGKFCNRAAASVALSFLAFVA  149 (149)
T ss_pred             ccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhccccccchhhccchhhHHHHHHHHHHHHHHHHHC
Confidence            7778887899999999999999999999999888884      3699775  99999999999999974

It has a conserved arginine and aspartate that could form an active site. These proteins are predicted to contain 3 or 4 transmembrane helices.

>TIGR01569 A_tha_TIGR01569 plant integral membrane protein TIGR01569

Probab=99.84  E-value=7.9e-21  Score=152.48  Aligned_cols=131  Identities=23%  Similarity=0.272  Sum_probs=116.7

Q ss_pred             hhHHHHHHHHHHHHHHHHHhCCC--------------CCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCccce
Q 030439           40 LALRVSQFIFAVAALCVMATTSD--------------FPSVTAFCFLVAAAGLQSLWSLSLAIVDIYALSVMRSLQNSRI  105 (177)
Q Consensus        40 L~LR~~q~~fa~~Sl~vM~s~~~--------------F~s~taF~YLva~~~Lq~lWS~~la~~diyall~k~~l~~~~~  105 (177)
                      |.||+..+.++++|+++|++|+|              |+++.+|+|+|.++++.+.||+.++...+|.+.+++...   .
T Consensus         1 l~LR~~~~~~sl~A~vvm~t~~qt~~~~~~~~~~~a~f~d~~af~y~v~anai~~~Ysll~l~~~~~~~~~~~~~~---~   77 (154)
T TIGR01569         1 LILRVLAFSATLAAAIVMGTNRETKVVFVQLITFKAKFSDLPAFVYFVVANAIACGYSLLSLVVSIFGLLKRRVFF---K   77 (154)
T ss_pred             CcHHHHHHHHHHHHHHHhhcccceeeeecccceeeeeeeccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchh---H
Confidence            57999999999999999999844              889999999999999999999999999999988777652   2


Q ss_pred             EEEEEEchhHHHHHHHhhhhhhhhhHHhhhccCC------CCCcc--cchHHHHHHHHHHHHHHHHHhHHHHHhhh
Q 030439          106 VNLFTVGDGITSTLTFAAACASAGITVLIDNDLQ------SCSQN--HCIQFETATAMAFISWFTALPSFLLNFWS  173 (177)
Q Consensus       106 ~~lf~vGD~V~a~L~~aAAsAsAgitvL~~~d~~------~C~~~--~C~~~~~SiamAFlsw~~~a~S~l~~~w~  173 (177)
                      .++.++|||+++||+++|++|+++++++.++|.+      .|...  +|+|...|++++|+++++++.+++++-..
T Consensus        78 ~~~~f~~D~v~~~Ll~sa~sAA~av~~l~~~G~~~~~W~~iC~~~~~FC~~~~~sl~~s~~a~v~~~llsv~Sa~~  153 (154)
T TIGR01569        78 LIALFFLDLVMLALLSSGTSAAAAVAYVGKLGNKEAGWLKICGVFGKFCDRIAGSLALSLFAVILLVLLSILSAIS  153 (154)
T ss_pred             HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            4557999999999999999999999999988854      48764  49999999999999999999999998654

This model describes a region of ~160 residues found exclusively in plant proteins, generally as the near complete length of the protein. At least 24 different members are found in Arabidopsis thaliana. Members have four predicted transmembrane regions, the last of which is preceded by an invariant CXXXXX[FY]C motif. The family is not functionally characterized.

>PF01284 MARVEL: Membrane-associating domain; InterPro: IPR021128 This entry represents the ~130-residue MARVEL (MAL and related proteins for vesicle trafficking and membrane link) domain

Probab=98.83  E-value=5.1e-08  Score=73.62  Aligned_cols=128  Identities=22%  Similarity=0.230  Sum_probs=95.8

Q ss_pred             chhhHHHHHHHHHHHHHHHHHhCC------CCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCccceEEE-EE
Q 030439           38 GGLALRVSQFIFAVAALCVMATTS------DFPSVTAFCFLVAAAGLQSLWSLSLAIVDIYALSVMRSLQNSRIVNL-FT  110 (177)
Q Consensus        38 ~~L~LR~~q~~fa~~Sl~vM~s~~------~F~s~taF~YLva~~~Lq~lWS~~la~~diyall~k~~l~~~~~~~l-f~  110 (177)
                      -...+|+.|++++++.+..++...      .....++.-|.+++.++..++++...+.+.+.  .|+ .. +....+ .+
T Consensus         5 ~~~ilR~lq~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~--~~~-~~-~~~~~~~~~   80 (144)
T PF01284_consen    5 PSGILRILQLVFALIIFGLVASSIATGSQIYGGSPSACGFALFVAVLSFLYTLIFLLLYLFS--LKY-RP-RIPWPLVEF   80 (144)
T ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHhccccccCCCCcchhHHHHHHHHHHHHHHHHHHHHHHH--Hhc-cc-ccccchhHH
Confidence            457899999999999999998775      35667788999999999999999999999988  221 12 223333 36


Q ss_pred             EchhHHHHHHHhhhhhhhhhHHhhhc-----cCCCCCcccchHHHHHHHHHHHHHHHHHhHHHH
Q 030439          111 VGDGITSTLTFAAACASAGITVLIDN-----DLQSCSQNHCIQFETATAMAFISWFTALPSFLL  169 (177)
Q Consensus       111 vGD~V~a~L~~aAAsAsAgitvL~~~-----d~~~C~~~~C~~~~~SiamAFlsw~~~a~S~l~  169 (177)
                      +.|.+.+.+-+++++..+--..-.+.     +...+....|+..+++++++|++|++-..|.++
T Consensus        81 ~~~~v~~il~l~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~Aa~~f~~~~~~l~~~s~~l  144 (144)
T PF01284_consen   81 IFDAVFAILWLAAFIALAAYLSDHSCSNTGNDYSYSGCSRCGAWKAAAAFGFLNWLLFIVSAVL  144 (144)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCcccccCCCCcCCCCCCcchhHHHHHHHHHHHHHHHHHHHHC
Confidence            67999999999988877644322111     112222334999999999999999999888753

The MARVEL domain is a module with a four transmembrane-helix architecture that has been identified in proteins of the myelin and lymphocyte (MAL), physins, gyrins and occludin families. All described MARVEL domain-containing proteins are consistent with the M-shaped topology: four transmembrane-helix region architecture with cytoplasmic N- and C-terminal regions. Their function could be related to cholesterol-rich membrane apposition events in a variety of cellular processes, such as biogenesis of vesicular transport carriers or tight junction regulation [].

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00