Citrus Sinensis ID: 030464

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------
Protein Sequence
MTPLSCFRATAVTAAPLSYRLFQLTTSRFYGSVAAAEPLFDPDNYYSYYQAESDSDQHRDSLRSVTLPDTEGRERRRGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGLLSKRLEDGYYRGEIGFILDGLPRSRIQATISL
Secondary Structure (PSIPRED)
cccccccHHccccccccHHHHHcccccccccccccccccccccccccccccccccHHHHHcccccccccccccccccccEEEEEcccccccccHHHHHHHHcccccccccHHHHHHcccccHHHHHHHHHHHccccccHHHHHHHHHHHHccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccEHHEccccccHHHHEEEcccccccccEEEEEccccccHHHHHHHHHHccccccccccccccccccccccccccEEEEEccccccccHHHHHHHHHccccccccHHHHHHHHHcccHHHHHHHHHHHccccccHHHHHHHHHHHHccccccccccEEEccccccHHHHHHHc
Coil and Loop (DISEMBL)
mtplscfratavtaaplsyRLFQLTTSrfygsvaaaeplfdpdnyysyyqaesdsdqhrdslrsvtlpdtegrerrrgvhwafigspraKKHVYAEMLSKLLevprismssivrqdlsprsslHKQIANAvnrgevvseDIIFGLLSKrledgyyrgeigfildglprsriqatisl
Flexible Loop (DISEMBL)
MTPLSCFRATAvtaaplsyRLFQLTTSRFYGSVAAAEPLFDPDNYYSYYQAesdsdqhrdslrsvtlpdtegrerrrgvhwafigsprakkhVYAEMLSKLLevprismssivrqdlsprsSLHKQIAnavnrgevvsedIIFGLLSkrledgyyRGEIgfildglprsriqatisl
Low Complexity Region (SEG)
MTPLSCFRATAVTAAPLSYRLFQLTTSRFYGSVAAAEPLFDPDNYYSYYQAESDSDQHRDSLRSVTLPDTEGRERRRGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGLLSKRLEDGYYRGEIGFILDGLPRSRIQATISL
Disordered region (IsUnstruct)
****SCFRATAVTAAPLSYRLFQLTTSRFYGSVAAAEPLFDPDNYYSYYQ***************************GVHWAFIGSPRAKKHVYAEMLSKLLEVPRISM**I*************QIANAVNRGEVVSEDIIFGLLSKRLEDGYYRGEIGFILDGLP**********
Disordered Region (DISOPRED)
*******RATAVTAAPLSYRLFQLTTSRFYGSVAAAEPLFDPDNYYSYYQA*****************************WAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGLLSKRLEDGYYRGEIGFILDGLPRSRIQATISL
Disordered Region (DISEMBL)
MTPLSCFRATAVTAAPLSYRLFQLTTSRFYGSVAAAEPLFDPDNYYSYYQA**********LRSVTLPDTEGRERRRGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGLLSKRLEDGYYRGEIGFILDGLPRSRIQATISL
Disordered Region (DISPRO)
**PLSCFRATAVTAAPLSYRLFQLTTSRFYGSVAAAEPLFDPDNYYSYYQAESDS*QHRD**RSVTLP*******RRGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGLLSKRLEDGYYRGEIGFILDGLPRSRIQATISL
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MTPLSCFRATAVTAAPLSYRLFQLTTSRFYGSVAAAEPLFDPDNYYSYYQAESDSDQHRDSLRSVTLPDTEGRERRRGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGLLSKRLEDGYYRGEIGFILDGLPRSRIQATISL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	177	2.2.26 [Sep-21-2011]
Q8HSW1	288	Adenylate kinase, chlorop	N/A	no	0.570	0.350	0.495	2e-21
Q9ZUU1	284	Probable adenylate kinase	no	no	0.570	0.355	0.485	9e-21
A6LLN4	214	Adenylate kinase OS=Therm	yes	no	0.525	0.434	0.347	3e-10
B7IHW7	214	Adenylate kinase OS=Therm	yes	no	0.525	0.434	0.336	5e-10
B2A4G2	214	Adenylate kinase OS=Natra	yes	no	0.491	0.406	0.376	1e-09
P73302	185	Adenylate kinase 1 OS=Syn	N/A	no	0.502	0.481	0.351	1e-09
A2BTB8	182	Adenylate kinase OS=Proch	yes	no	0.508	0.494	0.329	1e-09
Q110C6	191	Adenylate kinase OS=Trich	yes	no	0.525	0.486	0.326	4e-09
C3LTN4	214	Adenylate kinase OS=Vibri	yes	no	0.502	0.415	0.340	5e-09
Q9KTB7	214	Adenylate kinase OS=Vibri	yes	no	0.502	0.415	0.340	5e-09

>sp|Q8HSW1|KADC_SOLTU Adenylate kinase, chloroplastic OS=Solanum tuberosum GN=ADK PE=2 SV=1

 Score =  102 bits (253), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 50/101 (49%), Positives = 64/101 (63%)

Query: 75  RRRGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRG 134
           + + V W F+G P   K  YA  LS LL VP I+   +VR +L     L KQ+A  VN+G
Sbjct: 52  KAKTVQWVFLGCPGVGKGTYASRLSTLLGVPHIATGDLVRDELKSSGPLSKQLAEIVNQG 111

Query: 135 EVVSEDIIFGLLSKRLEDGYYRGEIGFILDGLPRSRIQATI 175
           ++VS++II  LLSKRLE G  +GE GFILDG PR+  QA I
Sbjct: 112 KLVSDEIILNLLSKRLESGEAKGEAGFILDGFPRTVRQAEI 152

This small ubiquitous enzyme is essential for maintenance and cell growth.
Solanum tuberosum (taxid: 4113)
EC: 2EC: .EC: 7EC: .EC: 4EC: .EC: 3

>sp|Q9ZUU1|KADC1_ARATH Probable adenylate kinase 1, chloroplastic OS=Arabidopsis thaliana GN=At2g37250 PE=2 SV=1

 Score = 99.8 bits (247), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 49/101 (48%), Positives = 66/101 (65%)

Query: 75  RRRGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRG 134
           + R V W F+G P   K  YA  LS LL VP I+   +VR++L+    L ++++  VN+G
Sbjct: 48  KDRNVQWVFLGCPGVGKGTYASRLSTLLGVPHIATGDLVREELASSGPLSQKLSEIVNQG 107

Query: 135 EVVSEDIIFGLLSKRLEDGYYRGEIGFILDGLPRSRIQATI 175
           ++VS++II  LLSKRLE G  RGE GFILDG PR+  QA I
Sbjct: 108 KLVSDEIIVDLLSKRLEAGEARGESGFILDGFPRTMRQAEI 148

This small ubiquitous enzyme is essential for maintenance and cell growth.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 4

EC: .

EC: 3

>sp|A6LLN4|KAD_THEM4 Adenylate kinase OS=Thermosipho melanesiensis (strain BI429 / DSM 12029) GN=adk PE=3 SV=1

 Score = 64.7 bits (156), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 33/95 (34%), Positives = 58/95 (61%), Gaps = 2/95 (2%)

Query: 79  VHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVS 138
           ++  F+G P A K  YA+ L ++L +P IS   + R+++S +S L +++ + + RGE+V 
Sbjct: 1   MNIVFLGPPGAGKGTYAKELKEILGIPHISTGDMFREEISAKSELGRKVEDILKRGELVP 60

Query: 139 EDIIFGLLSKRLEDGYYRGEIGFILDGLPRSRIQA 173
           +D+   ++ +RL     +   GFILDG PR+  QA
Sbjct: 61  DDLTNVIVKERLSKPDCKK--GFILDGYPRTVAQA 93

Catalyzes the reversible transfer of the terminal phosphate group between ATP and AMP. This small ubiquitous enzyme involved in the energy metabolism and nucleotide synthesis, is essential for maintenance and cell growth.

Thermosipho melanesiensis (strain BI429 / DSM 12029) (taxid: 391009)

EC: 2

EC: .

EC: 7

EC: .

EC: 4

EC: .

EC: 3

>sp|B7IHW7|KAD_THEAB Adenylate kinase OS=Thermosipho africanus (strain TCF52B) GN=adk PE=3 SV=1

 Score = 63.9 bits (154), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 32/95 (33%), Positives = 55/95 (57%), Gaps = 2/95 (2%)

Query: 79  VHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVS 138
           ++  F+G P A K  YA+ L ++L +P IS   + R+ ++ +S L K++   + RG++V 
Sbjct: 1   MNMVFLGPPGAGKGTYAKRLIEMLNIPHISTGDMFREAVASKSELGKKVEEILKRGDLVP 60

Query: 139 EDIIFGLLSKRLEDGYYRGEIGFILDGLPRSRIQA 173
           +D+   ++  RL     +   GFILDG PR+  QA
Sbjct: 61  DDLTNSIVKDRLSKEDCKN--GFILDGFPRTVAQA 93

Catalyzes the reversible transfer of the terminal phosphate group between ATP and AMP. This small ubiquitous enzyme involved in the energy metabolism and nucleotide synthesis, is essential for maintenance and cell growth.

Thermosipho africanus (strain TCF52B) (taxid: 484019)

EC: 2

EC: .

EC: 7

EC: .

EC: 4

EC: .

EC: 3

>sp|B2A4G2|KAD_NATTJ Adenylate kinase OS=Natranaerobius thermophilus (strain ATCC BAA-1301 / DSM 18059 / JW/NM-WN-LF) GN=adk PE=3 SV=1

 Score = 63.2 bits (152), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 35/93 (37%), Positives = 56/93 (60%), Gaps = 6/93 (6%)

Query: 83  FIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDII 142
            +G P A K   AE LSK L+VP I+   I R+ +S  + L K+  + ++ G++V +D++
Sbjct: 5   LMGPPGAGKGTQAEKLSKELDVPHIATGDIFRKAVSEGTELGKEAKSYMDAGQLVPDDVV 64

Query: 143 FGLLSKRLE--DGYYRGEIGFILDGLPRSRIQA 173
            G++ +RL+  D +     GFILDG PR+  QA
Sbjct: 65  IGIVEERLKKPDCHE----GFILDGFPRTVTQA 93

Catalyzes the reversible transfer of the terminal phosphate group between ATP and AMP. This small ubiquitous enzyme involved in the energy metabolism and nucleotide synthesis, is essential for maintenance and cell growth.

Natranaerobius thermophilus (strain ATCC BAA-1301 / DSM 18059 / JW/NM-WN-LF) (taxid: 457570)

EC: 2

EC: .

EC: 7

EC: .

EC: 4

EC: .

EC: 3

>sp|P73302|KAD1_SYNY3 Adenylate kinase 1 OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=adk1 PE=3 SV=2

 Score = 62.8 bits (151), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 32/91 (35%), Positives = 55/91 (60%), Gaps = 2/91 (2%)

Query: 83  FIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDII 142
           F+G+P + K   A  L++ L +P IS   ++RQ ++  + L  Q    +++GE+V + +I
Sbjct: 7   FLGAPGSGKGTQAVGLAETLGIPHISTGDMLRQAIADGTELGNQAKGYMDKGELVPDQLI 66

Query: 143 FGLLSKRLEDGYYRGEIGFILDGLPRSRIQA 173
            GL+ +RL  G+   + G+ILDG PR+  QA
Sbjct: 67  LGLIEERL--GHKDAKAGWILDGFPRNVNQA 95

Catalyzes the reversible transfer of the terminal phosphate group between ATP and AMP. This small ubiquitous enzyme involved in the energy metabolism and nucleotide synthesis, is essential for maintenance and cell growth.

Synechocystis sp. (strain PCC 6803 / Kazusa) (taxid: 1111708)

EC: 2

EC: .

EC: 7

EC: .

EC: 4

EC: .

EC: 3

>sp|A2BTB8|KAD_PROMS Adenylate kinase OS=Prochlorococcus marinus (strain AS9601) GN=adk PE=3 SV=1

 Score = 62.4 bits (150), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 31/94 (32%), Positives = 57/94 (60%), Gaps = 4/94 (4%)

Query: 80  HWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSE 139
           H  F+G+P A K   AE+LS+      +S   ++R+++   ++L  Q+ + +NRGE+VS+
Sbjct: 4   HLLFLGAPGAGKGTQAELLSQTTSYLHLSTGELLRKEIEMNTNLGIQVKDIMNRGELVSD 63

Query: 140 DIIFGLLSKRLEDGYYRGEIGFILDGLPRSRIQA 173
           +++  ++ + L     +  IG+ILDG PR+  QA
Sbjct: 64  ELVLKIVRQNL----VKDNIGWILDGYPRNLSQA 93

Catalyzes the reversible transfer of the terminal phosphate group between ATP and AMP. This small ubiquitous enzyme involved in the energy metabolism and nucleotide synthesis, is essential for maintenance and cell growth.

Prochlorococcus marinus (strain AS9601) (taxid: 146891)

EC: 2

EC: .

EC: 7

EC: .

EC: 4

EC: .

EC: 3

>sp|Q110C6|KAD_TRIEI Adenylate kinase OS=Trichodesmium erythraeum (strain IMS101) GN=adk PE=3 SV=1

 Score = 60.8 bits (146), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 31/95 (32%), Positives = 56/95 (58%), Gaps = 2/95 (2%)

Query: 79  VHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVS 138
           V   F+G P A K   A +++   +VP IS   I+R +++ RS L  +  + +++G++V 
Sbjct: 2   VKLVFLGPPGAGKGTQASLIADFYKVPHISTGDILRSNVAERSPLGIKAKDYMDKGDLVP 61

Query: 139 EDIIFGLLSKRLEDGYYRGEIGFILDGLPRSRIQA 173
           + +I  ++ +RLE+     + G+ILDG PR+  QA
Sbjct: 62  DQLILDMVKERLENP--NAQNGWILDGFPRTVTQA 94

Catalyzes the reversible transfer of the terminal phosphate group between ATP and AMP. This small ubiquitous enzyme involved in the energy metabolism and nucleotide synthesis, is essential for maintenance and cell growth.

Trichodesmium erythraeum (strain IMS101) (taxid: 203124)

EC: 2

EC: .

EC: 7

EC: .

EC: 4

EC: .

EC: 3

>sp|C3LTN4|KAD_VIBCM Adenylate kinase OS=Vibrio cholerae serotype O1 (strain M66-2) GN=adk PE=3 SV=1

 Score = 60.5 bits (145), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 31/91 (34%), Positives = 52/91 (57%), Gaps = 2/91 (2%)

Query: 83  FIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDII 142
            +G+P A K   A+ + +   +P+IS   ++R  +   + L KQ    ++ G++VS+DII
Sbjct: 5   LLGAPGAGKGTQAQFIMEKFGIPQISTGDMLRAAIKAGTELGKQAKAVIDAGQLVSDDII 64

Query: 143 FGLLSKRLEDGYYRGEIGFILDGLPRSRIQA 173
            GL+ +R+       E GF+LDG PR+  QA
Sbjct: 65  LGLIKERIAQADC--EKGFLLDGFPRTIPQA 93

Catalyzes the reversible transfer of the terminal phosphate group between ATP and AMP. This small ubiquitous enzyme involved in the energy metabolism and nucleotide synthesis, is essential for maintenance and cell growth.

Vibrio cholerae serotype O1 (strain M66-2) (taxid: 579112)

EC: 2

EC: .

EC: 7

EC: .

EC: 4

EC: .

EC: 3

>sp|Q9KTB7|KAD_VIBCH Adenylate kinase OS=Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961) GN=adk PE=3 SV=1

 Score = 60.5 bits (145), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 31/91 (34%), Positives = 52/91 (57%), Gaps = 2/91 (2%)

Query: 83  FIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDII 142
            +G+P A K   A+ + +   +P+IS   ++R  +   + L KQ    ++ G++VS+DII
Sbjct: 5   LLGAPGAGKGTQAQFIMEKFGIPQISTGDMLRAAIKAGTELGKQAKAVIDAGQLVSDDII 64

Query: 143 FGLLSKRLEDGYYRGEIGFILDGLPRSRIQA 173
            GL+ +R+       E GF+LDG PR+  QA
Sbjct: 65  LGLIKERIAQADC--EKGFLLDGFPRTIPQA 93

Catalyzes the reversible transfer of the terminal phosphate group between ATP and AMP. This small ubiquitous enzyme involved in the energy metabolism and nucleotide synthesis, is essential for maintenance and cell growth.

Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961) (taxid: 243277)

EC: 2

EC: .

EC: 7

EC: .

EC: 4

EC: .

EC: 3

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	177
255540291	263	adenylate kinase 1 chloroplast, putative	0.892	0.600	0.579	8e-43
225456276	299	PREDICTED: probable adenylate kinase 1,	0.881	0.521	0.592	8e-41
297734390	321	unnamed protein product [Vitis vinifera]	0.881	0.485	0.592	2e-40
224136097	201	predicted protein [Populus trichocarpa]	0.615	0.542	0.761	3e-40
147856242	299	hypothetical protein VITISV_026010 [Viti	0.790	0.468	0.589	7e-40
255536957	274	adenylate kinase 1 chloroplast, putative	0.909	0.587	0.562	1e-39
224060231	271	predicted protein [Populus trichocarpa]	0.915	0.597	0.563	1e-39
225452140	290	PREDICTED: probable adenylate kinase 1,	0.875	0.534	0.560	4e-39
77745507	283	adenylate kinase family-like protein [So	0.802	0.501	0.533	5e-36
77999238	283	adenylate kinase family-like protein [So	0.638	0.399	0.646	6e-36

>gi|255540291|ref|XP_002511210.1| adenylate kinase 1 chloroplast, putative [Ricinus communis] gi|223550325|gb|EEF51812.1| adenylate kinase 1 chloroplast, putative [Ricinus communis]

 Score =  178 bits (451), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 98/169 (57%), Positives = 121/169 (71%), Gaps = 11/169 (6%)

Query: 9   ATAVTAAPLSYRLFQLTTSRFYGSVAAAEPLFDPDNYYSYYQAESDSDQHRDSLRSVTLP 68
           A A+   P   RL  LT  R Y +V+AA+P  DPD YY Y  + S++D+        T P
Sbjct: 10  AAAIRVTPPLCRL--LTFCRLYTNVSAAQPQLDPDYYYYYSNSSSNNDK-------CTCP 60

Query: 69  DTEGRER--RRGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQ 126
             E +    +RGV WAFIG P  KK VY E LSKLL+VP ISM+S+VRQ+L+P +SL+KQ
Sbjct: 61  TAETKSSVPKRGVQWAFIGYPLVKKRVYIETLSKLLQVPYISMASLVRQELNPGTSLYKQ 120

Query: 127 IANAVNRGEVVSEDIIFGLLSKRLEDGYYRGEIGFILDGLPRSRIQATI 175
           IANAVNRG++V EDI+FGLLSKRLEDGYYRGE GFILDG+PRS++QA I
Sbjct: 121 IANAVNRGQLVPEDIMFGLLSKRLEDGYYRGETGFILDGIPRSQLQAEI 169

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225456276|ref|XP_002279733.1| PREDICTED: probable adenylate kinase 1, chloroplastic-like [Vitis vinifera]

 Score =  171 bits (434), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 96/162 (59%), Positives = 119/162 (73%), Gaps = 6/162 (3%)

Query: 14  AAPLSYRLFQLTTSRFYGSVAAAEPLFDPDNYYSYYQAESDSDQHRDSLRSVTLPDTEGR 73
           AAPL   L +LT SR +G+ AAA+P F+ D     Y  ES+ +  R S  +  + D+EG 
Sbjct: 10  AAPLLLHLRRLTLSRSFGAAAAAQPQFNVD-----YHPESEYEPLRGS-AAAPMVDSEGS 63

Query: 74  ERRRGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNR 133
              RGV W FIG+P AKKHVYA  LSKLL+VP IS++S+VRQDL PRSSL++QIANAVN 
Sbjct: 64  APSRGVQWVFIGNPGAKKHVYAGKLSKLLQVPHISIASLVRQDLHPRSSLYEQIANAVNN 123

Query: 134 GEVVSEDIIFGLLSKRLEDGYYRGEIGFILDGLPRSRIQATI 175
           G++V E++IFGLLS+RLE GYYRGE GFILDG+PRS  QA I
Sbjct: 124 GKLVPENVIFGLLSERLEAGYYRGECGFILDGIPRSVSQAEI 165

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297734390|emb|CBI15637.3| unnamed protein product [Vitis vinifera]

 Score =  170 bits (431), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 96/162 (59%), Positives = 119/162 (73%), Gaps = 6/162 (3%)

Query: 14  AAPLSYRLFQLTTSRFYGSVAAAEPLFDPDNYYSYYQAESDSDQHRDSLRSVTLPDTEGR 73
           AAPL   L +LT SR +G+ AAA+P F+ D     Y  ES+ +  R S  +  + D+EG 
Sbjct: 61  AAPLLLHLRRLTLSRSFGAAAAAQPQFNVD-----YHPESEYEPLRGS-AAAPMVDSEGS 114

Query: 74  ERRRGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNR 133
              RGV W FIG+P AKKHVYA  LSKLL+VP IS++S+VRQDL PRSSL++QIANAVN 
Sbjct: 115 APSRGVQWVFIGNPGAKKHVYAGKLSKLLQVPHISIASLVRQDLHPRSSLYEQIANAVNN 174

Query: 134 GEVVSEDIIFGLLSKRLEDGYYRGEIGFILDGLPRSRIQATI 175
           G++V E++IFGLLS+RLE GYYRGE GFILDG+PRS  QA I
Sbjct: 175 GKLVPENVIFGLLSERLEAGYYRGECGFILDGIPRSVSQAEI 216

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224136097|ref|XP_002322239.1| predicted protein [Populus trichocarpa] gi|222869235|gb|EEF06366.1| predicted protein [Populus trichocarpa]

 Score =  169 bits (429), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 83/109 (76%), Positives = 93/109 (85%)

Query: 67  LPDTEGRERRRGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQ 126
           + DTE     RGV WAFIGSPRAKK VYAE LSKLLEVP ISM+S+ RQ+L+PRSSL+KQ
Sbjct: 1   MDDTENSVPGRGVQWAFIGSPRAKKRVYAETLSKLLEVPCISMASLARQELNPRSSLYKQ 60

Query: 127 IANAVNRGEVVSEDIIFGLLSKRLEDGYYRGEIGFILDGLPRSRIQATI 175
           IANAVNR  +V EDIIFGLLSKRLEDGYY+GE GFILDG+PRSR+QA I
Sbjct: 61  IANAVNRRMLVPEDIIFGLLSKRLEDGYYKGETGFILDGIPRSRLQAEI 109

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147856242|emb|CAN81789.1| hypothetical protein VITISV_026010 [Vitis vinifera]

 Score =  168 bits (426), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 86/146 (58%), Positives = 108/146 (73%), Gaps = 6/146 (4%)

Query: 30  YGSVAAAEPLFDPDNYYSYYQAESDSDQHRDSLRSVTLPDTEGRERRRGVHWAFIGSPRA 89
           +G+ AAA+P F  D     Y  ES+ +  R S  +  + D+EG    RGV W FIG+P A
Sbjct: 26  FGAAAAAQPQFKVD-----YHPESEYEPLRGS-ATAPMVDSEGSAPSRGVQWVFIGNPGA 79

Query: 90  KKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGLLSKR 149
           KKHVYA  LSKLL+VP IS++S+VRQDL PRSSL++QIANA+N G++V E++IFGLLS+R
Sbjct: 80  KKHVYAGKLSKLLQVPHISIASLVRQDLHPRSSLYEQIANAMNNGKLVPENVIFGLLSER 139

Query: 150 LEDGYYRGEIGFILDGLPRSRIQATI 175
           LE GYYRGE GFILDG+PRS  QA I
Sbjct: 140 LEAGYYRGECGFILDGIPRSVSQAEI 165

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255536957|ref|XP_002509545.1| adenylate kinase 1 chloroplast, putative [Ricinus communis] gi|223549444|gb|EEF50932.1| adenylate kinase 1 chloroplast, putative [Ricinus communis]

 Score =  167 bits (424), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 94/167 (56%), Positives = 115/167 (68%), Gaps = 6/167 (3%)

Query: 10  TAVTAAPLSYRLFQLTTSRFYGSVAAAEPLFDPDNYYSYYQAESDSD-QHRDSLRSVTLP 68
            A T  P    L ++ TSR YGS AA +  +D ++YYS  +AE   D Q R S       
Sbjct: 11  AAATPPPYLSSLRRILTSRAYGSAAAIQ--YDYEDYYS--EAEDGYDHQDRHSRHPEPCL 66

Query: 69  DTEGRERRRGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIA 128
           D+      RGV W  IG P  KKHVYAE LSKLLEVP ISM +++RQ+L+PRSSL+KQIA
Sbjct: 67  DSVAN-WGRGVQWVLIGDPGVKKHVYAEELSKLLEVPHISMGTLLRQELNPRSSLYKQIA 125

Query: 129 NAVNRGEVVSEDIIFGLLSKRLEDGYYRGEIGFILDGLPRSRIQATI 175
           NAVN G++V E++IFGLLSKR E+GY RGE GFILDG+PR+RIQA I
Sbjct: 126 NAVNEGKLVPEEVIFGLLSKRFEEGYCRGEKGFILDGIPRTRIQAEI 172

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224060231|ref|XP_002300097.1| predicted protein [Populus trichocarpa] gi|222847355|gb|EEE84902.1| predicted protein [Populus trichocarpa]

 Score =  167 bits (423), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 93/165 (56%), Positives = 115/165 (69%), Gaps = 3/165 (1%)

Query: 11  AVTAAPLSYRLFQLTTSRFYGSVAAAEPLFDPDNYYSYYQAESDSDQHRDSLRSVTLPDT 70
           A+TAAP   R+ +   SR YGS AA +  +D   YY  Y +E+  D  + +     L   
Sbjct: 8   AITAAPSLRRVIRFPDSRGYGSAAAVQCDYD---YYDDYYSEAVEDYGQLNRLKPNLESV 64

Query: 71  EGRERRRGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANA 130
            G    RGV W  IG P AKKHVYAE LSKLLEVP ISM +++RQ+L+  SS++KQIANA
Sbjct: 65  AGSASGRGVQWVLIGDPGAKKHVYAEKLSKLLEVPHISMGTLLRQELNLNSSVYKQIANA 124

Query: 131 VNRGEVVSEDIIFGLLSKRLEDGYYRGEIGFILDGLPRSRIQATI 175
           VN G++V ED+IFGLLSKRLE+GYYRGE GFILDG+PR+RIQA I
Sbjct: 125 VNEGKLVPEDVIFGLLSKRLEEGYYRGENGFILDGIPRTRIQAEI 169

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225452140|ref|XP_002263142.1| PREDICTED: probable adenylate kinase 1, chloroplastic [Vitis vinifera] gi|296090237|emb|CBI40056.3| unnamed protein product [Vitis vinifera]

 Score =  166 bits (420), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 92/164 (56%), Positives = 113/164 (68%), Gaps = 9/164 (5%)

Query: 13  TAAPLSYRL-FQLTTSRFYGSVAAAEPLFDPDNYYSYYQAESDSDQHRDSLRSVTLPDTE 71
           T APL  R    +   R YGS AAA+          Y   + + ++  +  R +   D+E
Sbjct: 9   TVAPLFLRRRIGVLPKREYGSAAAAQ--------VDYDYYDYEEEEEVEVYRKLARADSE 60

Query: 72  GRERRRGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAV 131
           G    RGVHW  IG P AKKHVYAE LS+LL+VP ISM ++VRQ+LSP SSL+KQIANAV
Sbjct: 61  GCVSGRGVHWVIIGEPGAKKHVYAERLSRLLQVPHISMGTLVRQELSPLSSLYKQIANAV 120

Query: 132 NRGEVVSEDIIFGLLSKRLEDGYYRGEIGFILDGLPRSRIQATI 175
           N+G++V EDIIFGLLSKRLE+GY RGE GFILDG+PR+RIQA I
Sbjct: 121 NQGKLVPEDIIFGLLSKRLEEGYCRGETGFILDGIPRTRIQAEI 164

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|77745507|gb|ABB02652.1| adenylate kinase family-like protein [Solanum tuberosum]

 Score =  155 bits (392), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 80/150 (53%), Positives = 105/150 (70%), Gaps = 8/150 (5%)

Query: 34  AAAEPLFDPDNYYSYYQAESD--------SDQHRDSLRSVTLPDTEGRERRRGVHWAFIG 85
           AA +PL   ++  SY  A +          +      RS  + ++EG   RRGV W  +G
Sbjct: 9   AAVQPLIRTESLRSYGSAAAQLVDYDYDDYEYEEYQNRSYVMEESEGSIPRRGVQWVIMG 68

Query: 86  SPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGL 145
            P A++HVYA+ LSKLL+VP ISM S+VRQ+L PRSSL+KQIA+AVN+G++V E++IFGL
Sbjct: 69  DPMAQRHVYAQWLSKLLDVPHISMGSLVRQELHPRSSLYKQIADAVNQGKLVPEEVIFGL 128

Query: 146 LSKRLEDGYYRGEIGFILDGLPRSRIQATI 175
           LSKRLE+GY  GE GFILDG+PRS+IQA I
Sbjct: 129 LSKRLEEGYCSGESGFILDGIPRSKIQAEI 158

Source: Solanum tuberosum

Species: Solanum tuberosum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|77999238|gb|ABB16966.1| adenylate kinase family-like protein [Solanum tuberosum]

 Score =  155 bits (392), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 73/113 (64%), Positives = 93/113 (82%)

Query: 63  RSVTLPDTEGRERRRGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSS 122
           RS  + ++EG   RRGV W  +G P A++HVYA+ LSKLL+VP ISM S+VRQ+L PRSS
Sbjct: 46  RSYVMEESEGSIPRRGVQWVIMGDPMAQRHVYAQWLSKLLDVPHISMGSLVRQELHPRSS 105

Query: 123 LHKQIANAVNRGEVVSEDIIFGLLSKRLEDGYYRGEIGFILDGLPRSRIQATI 175
           L+KQIA+AVN+G++V E++IFGLLSKRLE+GY  GE GFILDG+PRS+IQA I
Sbjct: 106 LYKQIADAVNQGKLVPEEVIFGLLSKRLEEGYCSGESGFILDGIPRSKIQAEI 158

Source: Solanum tuberosum

Species: Solanum tuberosum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	177
TAIR|locus:2082329	263	AT3G01820 [Arabidopsis thalian	0.774	0.520	0.527	9.8e-32
TAIR|locus:2049842	284	ADK "adenosine kinase" [Arabid	0.559	0.348	0.494	7.2e-20
TAIR|locus:2056098	295	AT2G39270 [Arabidopsis thalian	0.559	0.335	0.464	1.1e-18
UNIPROTKB|Q9KTB7	214	adk "Adenylate kinase" [Vibrio	0.497	0.411	0.344	1.4e-09
TIGR_CMR|VC_0986	214	VC_0986 "adenylate kinase" [Vi	0.497	0.411	0.344	1.4e-09
TIGR_CMR|GSU_2836	217	GSU_2836 "adenylate kinase" [G	0.502	0.410	0.318	4e-08
UNIPROTKB|G3V213	133	AK2 "Adenylate kinase 2, mitoc	0.610	0.812	0.279	2.9e-07
UNIPROTKB|Q47XA8	214	adk "Adenylate kinase" [Colwel	0.497	0.411	0.322	3.9e-07
TIGR_CMR|CPS_3900	214	CPS_3900 "adenylate kinase" [C	0.497	0.411	0.322	3.9e-07
UNIPROTKB|F8VZG5	162	AK2 "Adenylate kinase 2, mitoc	0.593	0.648	0.287	8.6e-07

TAIR|locus:2082329 AT3G01820 [Arabidopsis thaliana (taxid:3702)]

 Score = 348 (127.6 bits), Expect = 9.8e-32, P = 9.8e-32
 Identities = 77/146 (52%), Positives = 101/146 (69%)

Query:    28 RFYGSVAAAEPLFDPDNYYSYYQAESDSDQHRDSLRSVTLPDTEGRERRRGVHWAFIGSP 87
             R +GS AA E  +D D+ Y Y       D  R +   + L D  G +R  GV W  +G+P
Sbjct:    21 RSFGSAAALEFDYDSDDEYLY------GDDRRLAEPRLGL-DGSGPDR--GVQWVLMGAP 71

Query:    88 RAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGLLS 147
              A +HV+AE LSKLLEVP ISM S+VRQ+L+PRSSL+K+IA+AVN  ++V + ++F LLS
Sbjct:    72 GAWRHVFAERLSKLLEVPHISMGSLVRQELNPRSSLYKEIASAVNERKLVPKSVVFALLS 131

Query:   148 KRLEDGYYRGEIGFILDGLPRSRIQA 173
             KRLE+GY RGE GFIL G+PR+R QA
Sbjct:   132 KRLEEGYARGETGFILHGIPRTRFQA 157

GO:0005524 "ATP binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISM

GO:0006139 "nucleobase-containing compound metabolic process" evidence=IEA

GO:0019201 "nucleotide kinase activity" evidence=ISS

GO:0019205 "nucleobase-containing compound kinase activity" evidence=IEA

GO:0006354 "DNA-dependent transcription, elongation" evidence=RCA

TAIR|locus:2049842 ADK "adenosine kinase" [Arabidopsis thaliana (taxid:3702)]

 Score = 236 (88.1 bits), Expect = 7.2e-20, P = 7.2e-20
 Identities = 49/99 (49%), Positives = 65/99 (65%)

Query:    77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEV 136
             R V W F+G P   K  YA  LS LL VP I+   +VR++L+    L ++++  VN+G++
Sbjct:    50 RNVQWVFLGCPGVGKGTYASRLSTLLGVPHIATGDLVREELASSGPLSQKLSEIVNQGKL 109

Query:   137 VSEDIIFGLLSKRLEDGYYRGEIGFILDGLPRSRIQATI 175
             VS++II  LLSKRLE G  RGE GFILDG PR+  QA I
Sbjct:   110 VSDEIIVDLLSKRLEAGEARGESGFILDGFPRTMRQAEI 148

GO:0005524 "ATP binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISM

GO:0006139 "nucleobase-containing compound metabolic process" evidence=IEA

GO:0016776 "phosphotransferase activity, phosphate group as acceptor" evidence=IEA

GO:0019201 "nucleotide kinase activity" evidence=IEA;ISS

GO:0019205 "nucleobase-containing compound kinase activity" evidence=IEA

GO:0046939 "nucleotide phosphorylation" evidence=IEA

GO:0005634 "nucleus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0004017 "adenylate kinase activity" evidence=IDA

GO:0008652 "cellular amino acid biosynthetic process" evidence=IMP

GO:0009507 "chloroplast" evidence=IDA

GO:0009570 "chloroplast stroma" evidence=IDA

GO:0048364 "root development" evidence=IMP

GO:0048367 "shoot system development" evidence=IMP

GO:0006354 "DNA-dependent transcription, elongation" evidence=RCA

TAIR|locus:2056098 AT2G39270 [Arabidopsis thaliana (taxid:3702)]

 Score = 225 (84.3 bits), Expect = 1.1e-18, P = 1.1e-18
 Identities = 46/99 (46%), Positives = 60/99 (60%)

Query:    77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEV 136
             R  HW F+G P   K  YA  LS LL VP I+   +VR++LS    L  Q+   VN G++
Sbjct:    63 RNFHWVFLGCPGVGKGTYASRLSSLLGVPHIATGDLVREELSSSGLLSSQLKELVNHGKL 122

Query:   137 VSEDIIFGLLSKRLEDGYYRGEIGFILDGLPRSRIQATI 175
             V ++ I  LLSKRL+ G  +GE G+ILDG PR+  QA I
Sbjct:   123 VPDEFIISLLSKRLQAGKDKGESGYILDGFPRTVTQAEI 161

GO:0005524 "ATP binding" evidence=IEA

GO:0006139 "nucleobase-containing compound metabolic process" evidence=IEA

GO:0016776 "phosphotransferase activity, phosphate group as acceptor" evidence=IEA

GO:0019201 "nucleotide kinase activity" evidence=IEA;ISS

GO:0019205 "nucleobase-containing compound kinase activity" evidence=IEA

GO:0046939 "nucleotide phosphorylation" evidence=IEA

UNIPROTKB|Q9KTB7 adk "Adenylate kinase" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)]

 Score = 139 (54.0 bits), Expect = 1.4e-09, P = 1.4e-09
 Identities = 31/90 (34%), Positives = 52/90 (57%)

Query:    84 IGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIF 143
             +G+P A K   A+ + +   +P+IS   ++R  +   + L KQ    ++ G++VS+DII 
Sbjct:     6 LGAPGAGKGTQAQFIMEKFGIPQISTGDMLRAAIKAGTELGKQAKAVIDAGQLVSDDIIL 65

Query:   144 GLLSKRLEDGYYRGEIGFILDGLPRSRIQA 173
             GL+ +R+       E GF+LDG PR+  QA
Sbjct:    66 GLIKERIAQADC--EKGFLLDGFPRTIPQA 93

GO:0004017 "adenylate kinase activity" evidence=ISS

GO:0015949 "nucleobase-containing small molecule interconversion" evidence=ISS

TIGR_CMR|VC_0986 VC_0986 "adenylate kinase" [Vibrio cholerae O1 biovar El Tor (taxid:686)]

 Score = 139 (54.0 bits), Expect = 1.4e-09, P = 1.4e-09
 Identities = 31/90 (34%), Positives = 52/90 (57%)

Query:    84 IGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIF 143
             +G+P A K   A+ + +   +P+IS   ++R  +   + L KQ    ++ G++VS+DII 
Sbjct:     6 LGAPGAGKGTQAQFIMEKFGIPQISTGDMLRAAIKAGTELGKQAKAVIDAGQLVSDDIIL 65

Query:   144 GLLSKRLEDGYYRGEIGFILDGLPRSRIQA 173
             GL+ +R+       E GF+LDG PR+  QA
Sbjct:    66 GLIKERIAQADC--EKGFLLDGFPRTIPQA 93

GO:0004017 "adenylate kinase activity" evidence=ISS

GO:0015949 "nucleobase-containing small molecule interconversion" evidence=ISS

TIGR_CMR|GSU_2836 GSU_2836 "adenylate kinase" [Geobacter sulfurreducens PCA (taxid:243231)]

 Score = 129 (50.5 bits), Expect = 4.0e-08, P = 4.0e-08
 Identities = 29/91 (31%), Positives = 51/91 (56%)

Query:    83 FIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDII 142
             F+G P A K   A +L++  EVP+IS   I+R  +  ++ +  +    +++G +V + ++
Sbjct:     5 FLGPPGAGKGTQANLLTRTYEVPQISTGEILRAAVKSKTPMGVKAKEYMDQGALVPDSVV 64

Query:   143 FGLLSKRLEDGYYRGEIGFILDGLPRSRIQA 173
              G++ +RL         GFILDG PR+  QA
Sbjct:    65 VGIVEERLASPDCAS--GFILDGFPRTVAQA 93

GO:0004017 "adenylate kinase activity" evidence=ISS

GO:0015949 "nucleobase-containing small molecule interconversion" evidence=ISS

UNIPROTKB|G3V213 AK2 "Adenylate kinase 2, mitochondrial" [Homo sapiens (taxid:9606)]

 Score = 117 (46.2 bits), Expect = 2.9e-07, P = 2.9e-07
 Identities = 31/111 (27%), Positives = 60/111 (54%)

Query:    66 TLPDTEGRERRRGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHK 125
             ++P  E  E  +G+    +G P A K   A  L++   V  ++   ++R  ++  S L K
Sbjct:     4 SVPAAEP-EYPKGIRAVLLGPPGAGKGTQAPRLAENFCVCHLATGDMLRAMVASGSELGK 62

Query:   126 QIANAVNRGEVVSEDIIFGLLSKRLEDGYYRGEIGFILDGLPRSRIQATIS 176
             ++   ++ G++VS++++  L+ K LE    +   GF+LDG PR+  QA ++
Sbjct:    63 KLKATMDAGKLVSDEMVVELIEKNLETPLCKN--GFLLDGFPRTVRQAEMA 111

GO:0005524 "ATP binding" evidence=IEA

GO:0006139 "nucleobase-containing compound metabolic process" evidence=IEA

GO:0019205 "nucleobase-containing compound kinase activity" evidence=IEA

UNIPROTKB|Q47XA8 adk "Adenylate kinase" [Colwellia psychrerythraea 34H (taxid:167879)]

 Score = 125 (49.1 bits), Expect = 3.9e-07, P = 3.9e-07
 Identities = 29/90 (32%), Positives = 50/90 (55%)

Query:    84 IGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIF 143
             +G+P A K   A+ L     +P+IS   ++R  +   S L  +    ++ G++VS+D+I 
Sbjct:     6 LGAPGAGKGTQAQFLMAKFGIPQISTGDMLRAAIKAGSELGNKAKAVMDAGQLVSDDLII 65

Query:   144 GLLSKRLEDGYYRGEIGFILDGLPRSRIQA 173
             GL+ +R+     +   GF+LDG PR+  QA
Sbjct:    66 GLVKERVAQEDCKA--GFLLDGFPRTIPQA 93

GO:0004017 "adenylate kinase activity" evidence=ISS

GO:0015949 "nucleobase-containing small molecule interconversion" evidence=ISS

TIGR_CMR|CPS_3900 CPS_3900 "adenylate kinase" [Colwellia psychrerythraea 34H (taxid:167879)]

 Score = 125 (49.1 bits), Expect = 3.9e-07, P = 3.9e-07
 Identities = 29/90 (32%), Positives = 50/90 (55%)

Query:    84 IGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIF 143
             +G+P A K   A+ L     +P+IS   ++R  +   S L  +    ++ G++VS+D+I 
Sbjct:     6 LGAPGAGKGTQAQFLMAKFGIPQISTGDMLRAAIKAGSELGNKAKAVMDAGQLVSDDLII 65

Query:   144 GLLSKRLEDGYYRGEIGFILDGLPRSRIQA 173
             GL+ +R+     +   GF+LDG PR+  QA
Sbjct:    66 GLVKERVAQEDCKA--GFLLDGFPRTIPQA 93

GO:0004017 "adenylate kinase activity" evidence=ISS

GO:0015949 "nucleobase-containing small molecule interconversion" evidence=ISS

UNIPROTKB|F8VZG5 AK2 "Adenylate kinase 2, mitochondrial" [Homo sapiens (taxid:9606)]

 Score = 116 (45.9 bits), Expect = 8.6e-07, P = 8.6e-07
 Identities = 31/108 (28%), Positives = 58/108 (53%)

Query:    66 TLPDTEGRERRRGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHK 125
             ++P  E  E  +G+    +G P A K   A  L++   V  ++   ++R  ++  S L K
Sbjct:     4 SVPAAEP-EYPKGIRAVLLGPPGAGKGTQAPRLAENFCVCHLATGDMLRAMVASGSELGK 62

Query:   126 QIANAVNRGEVVSEDIIFGLLSKRLEDGYYRGEIGFILDGLPRSRIQA 173
             ++   ++ G++VS++++  L+ K LE    +   GF+LDG PR+  QA
Sbjct:    63 KLKATMDAGKLVSDEMVVELIEKNLETPLCKN--GFLLDGFPRTVRQA 108

GO:0005524 "ATP binding" evidence=IEA

GO:0006139 "nucleobase-containing compound metabolic process" evidence=IEA

GO:0019205 "nucleobase-containing compound kinase activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00017914001	SubName- Full=Chromosome chr17 scaffold_16, whole genome shotgun sequence; (264 aa)
		(Vitis vinifera)
Predicted Functional Partners:
	GSVIVG00026157001	SubName- Full=Chromosome chr15 scaffold_37, whole genome shotgun sequence; (225 aa)			•						0.491

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	177
PLN02459	261	PLN02459, PLN02459, probable adenylate kinase	3e-28
cd01428	194	cd01428, ADK, Adenylate kinase (ADK) catalyzes the	2e-18
PTZ00088	229	PTZ00088, PTZ00088, adenylate kinase 1; Provisiona	4e-16
TIGR01351	210	TIGR01351, adk, adenylate kinase	2e-13
COG0563	178	COG0563, Adk, Adenylate kinase and related kinases	4e-12
PRK02496	184	PRK02496, adk, adenylate kinase; Provisional	5e-12
pfam00406	186	pfam00406, ADK, Adenylate kinase	2e-09
PRK14528	186	PRK14528, PRK14528, adenylate kinase; Provisional	2e-08
PRK14531	183	PRK14531, PRK14531, adenylate kinase; Provisional	3e-08
PRK00279	215	PRK00279, adk, adenylate kinase; Reviewed	1e-07
PRK14526	211	PRK14526, PRK14526, adenylate kinase; Provisional	3e-07
PRK14529	223	PRK14529, PRK14529, adenylate kinase; Provisional	9e-07
PRK14532	188	PRK14532, PRK14532, adenylate kinase; Provisional	2e-06
PRK14527	191	PRK14527, PRK14527, adenylate kinase; Provisional	2e-06
PLN02842	505	PLN02842, PLN02842, nucleotide kinase	6e-06
PLN02674	244	PLN02674, PLN02674, adenylate kinase	3e-05

>gnl|CDD|215253 PLN02459, PLN02459, probable adenylate kinase

 Score =  105 bits (263), Expect = 3e-28
 Identities = 49/103 (47%), Positives = 64/103 (62%)

Query: 73  RERRRGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVN 132
             + R V+W F+G P   K  YA  LSKLL VP I+   +VR+++     L  Q+   VN
Sbjct: 24  LAKGRNVNWVFLGCPGVGKGTYASRLSKLLGVPHIATGDLVREEIKSSGPLGAQLKEIVN 83

Query: 133 RGEVVSEDIIFGLLSKRLEDGYYRGEIGFILDGLPRSRIQATI 175
           +G++V ++IIF LLSKRLE G   GE GFILDG PR+  QA I
Sbjct: 84  QGKLVPDEIIFSLLSKRLEAGEEEGESGFILDGFPRTVRQAEI 126

Length = 261

>gnl|CDD|238713 cd01428, ADK, Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP)

 Score = 78.0 bits (193), Expect = 2e-18
 Identities = 30/91 (32%), Positives = 53/91 (58%), Gaps = 2/91 (2%)

Query: 83  FIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDII 142
            +G P + K   AE L+K   +P IS   ++R++++  + L K+    ++ G++V ++I+
Sbjct: 4   LLGPPGSGKGTQAERLAKKYGLPHISTGDLLREEIASGTELGKKAKEYIDSGKLVPDEIV 63

Query: 143 FGLLSKRLEDGYYRGEIGFILDGLPRSRIQA 173
             LL +RL+      + GFILDG PR+  QA
Sbjct: 64  IKLLKERLKKPD--CKKGFILDGFPRTVDQA 92

This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates. Length = 194

>gnl|CDD|240262 PTZ00088, PTZ00088, adenylate kinase 1; Provisional

 Score = 72.5 bits (178), Expect = 4e-16
 Identities = 27/101 (26%), Positives = 55/101 (54%), Gaps = 6/101 (5%)

Query: 76  RRGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGE 135
           +  +     G+P   K  +AE+LSK   +  I+M +I+R+++  ++++ K+I   V  G 
Sbjct: 4   KGPLKIVLFGAPGVGKGTFAEILSKKENLKHINMGNILREEIKAKTTIGKEIQKVVTSGN 63

Query: 136 VVSEDIIFGLLSKRLE---DGYYRGEIGFILDGLPRSRIQA 173
           +V ++++  ++   +    D  ++   GFILDG PR+  Q 
Sbjct: 64  LVPDNLVIAIVKDEIAKVTDDCFK---GFILDGFPRNLKQC 101

Length = 229

>gnl|CDD|233369 TIGR01351, adk, adenylate kinase

 Score = 64.9 bits (159), Expect = 2e-13
 Identities = 28/91 (30%), Positives = 50/91 (54%), Gaps = 1/91 (1%)

Query: 83  FIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDII 142
            +G P + K   A+ +++   +P IS   ++R ++   + L K+    + +GE+V ++I+
Sbjct: 4   LLGPPGSGKGTQAKRIAEKYGLPHISTGDLLRAEIKAGTPLGKKAKEYMEKGELVPDEIV 63

Query: 143 FGLLSKRLEDGYYRGEIGFILDGLPRSRIQA 173
             L+ +RL       E GFILDG PR+  QA
Sbjct: 64  NQLVKERLTQNQDN-ENGFILDGFPRTLSQA 93

Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason [Purines, pyrimidines, nucleosides, and nucleotides, Nucleotide and nucleoside interconversions]. Length = 210

>gnl|CDD|223637 COG0563, Adk, Adenylate kinase and related kinases [Nucleotide transport and metabolism]

 Score = 61.1 bits (149), Expect = 4e-12
 Identities = 32/92 (34%), Positives = 56/92 (60%), Gaps = 2/92 (2%)

Query: 82  AFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDI 141
             +G P A K   A+ L+K L +P +    I+R  ++ R+ L ++I   +++GE+V ++I
Sbjct: 4   LILGPPGAGKSTLAKKLAKKLGLPHLDTGDILRAAIAERTELGEEIKKYIDKGELVPDEI 63

Query: 142 IFGLLSKRLEDGYYRGEIGFILDGLPRSRIQA 173
           + GL+ +RL++   +   GFILDG PR+  QA
Sbjct: 64  VNGLVKERLDEADCKA--GFILDGFPRTLCQA 93

Length = 178

>gnl|CDD|179433 PRK02496, adk, adenylate kinase; Provisional

 Score = 60.9 bits (148), Expect = 5e-12
 Identities = 30/91 (32%), Positives = 51/91 (56%), Gaps = 2/91 (2%)

Query: 83  FIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDII 142
           F+G P A K   A +L++ L +P IS   I+RQ +  ++ L  +    +++GE+V + ++
Sbjct: 6   FLGPPGAGKGTQAVVLAEHLHIPHISTGDILRQAIKEQTPLGIKAQGYMDKGELVPDQLV 65

Query: 143 FGLLSKRLEDGYYRGEIGFILDGLPRSRIQA 173
             L+ +RL+        G+ILDG PR   QA
Sbjct: 66  LDLVQERLQQPDAAN--GWILDGFPRKVTQA 94

Length = 184

>gnl|CDD|201213 pfam00406, ADK, Adenylate kinase

 Score = 53.8 bits (130), Expect = 2e-09
 Identities = 28/91 (30%), Positives = 52/91 (57%), Gaps = 2/91 (2%)

Query: 83  FIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDII 142
            +G P A K   AE + +   +P +S   ++R ++   + L K+    +++GE+V ++++
Sbjct: 1   LLGPPGAGKGTQAERIVQKYGIPHLSTGDLLRAEVKSGTELGKEAKEYMDKGELVPDEVV 60

Query: 143 FGLLSKRLEDGYYRGEIGFILDGLPRSRIQA 173
            GL+ +RLE      + GF+LDG PR+  QA
Sbjct: 61  IGLVKERLEQN--DCKNGFLLDGFPRTVPQA 89

Length = 186

>gnl|CDD|172994 PRK14528, PRK14528, adenylate kinase; Provisional

 Score = 51.2 bits (122), Expect = 2e-08
 Identities = 26/91 (28%), Positives = 54/91 (59%), Gaps = 2/91 (2%)

Query: 83  FIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDII 142
           F+G P A K   A++L + L +P+IS   I+R+ +  ++++  +    ++ G++V + ++
Sbjct: 6   FMGPPGAGKGTQAKILCERLSIPQISTGDILREAVKNQTAMGIEAKRYMDAGDLVPDSVV 65

Query: 143 FGLLSKRLEDGYYRGEIGFILDGLPRSRIQA 173
            G++  R+ +   +   GF+LDG PR+  QA
Sbjct: 66  IGIIKDRIREADCKN--GFLLDGFPRTVEQA 94

Length = 186

>gnl|CDD|172997 PRK14531, PRK14531, adenylate kinase; Provisional

 Score = 50.6 bits (121), Expect = 3e-08
 Identities = 26/91 (28%), Positives = 49/91 (53%), Gaps = 3/91 (3%)

Query: 83  FIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDII 142
           F+G P A K   A  L     +  +S   ++R +++  S+L ++    +NRGE+VS+ ++
Sbjct: 7   FLGPPGAGKGTQAARLCAAHGLRHLSTGDLLRSEVAAGSALGQEAEAVMNRGELVSDALV 66

Query: 143 FGLLSKRLEDGYYRGEIGFILDGLPRSRIQA 173
             ++  +L+        G++LDG PR+  QA
Sbjct: 67  LAIVESQLKA--LNSG-GWLLDGFPRTVAQA 94

Length = 183

>gnl|CDD|234711 PRK00279, adk, adenylate kinase; Reviewed

 Score = 49.0 bits (118), Expect = 1e-07
 Identities = 28/91 (30%), Positives = 51/91 (56%), Gaps = 2/91 (2%)

Query: 83  FIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDII 142
            +G P A K   A+ +++   +P IS   ++R  +   + L K+  + ++ GE+V ++I+
Sbjct: 5   LLGPPGAGKGTQAKFIAEKYGIPHISTGDMLRAAVKAGTELGKEAKSYMDAGELVPDEIV 64

Query: 143 FGLLSKRLEDGYYRGEIGFILDGLPRSRIQA 173
            GL+ +RL     +   GF+LDG PR+  QA
Sbjct: 65  IGLVKERLAQPDCKN--GFLLDGFPRTIPQA 93

Length = 215

>gnl|CDD|172992 PRK14526, PRK14526, adenylate kinase; Provisional

 Score = 48.3 bits (115), Expect = 3e-07
 Identities = 27/91 (29%), Positives = 46/91 (50%), Gaps = 2/91 (2%)

Query: 83  FIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDII 142
           F+G P + K   A++LS  L    IS   + R+++   + L K+I   V  G++V + I 
Sbjct: 5   FLGPPGSGKGTIAKILSNELNYYHISTGDLFRENILNSTPLGKEIKQIVENGQLVPDSIT 64

Query: 143 FGLLSKRLEDGYYRGEIGFILDGLPRSRIQA 173
             ++  ++     +    FILDG PR+  QA
Sbjct: 65  IKIVEDKINT--IKNNDNFILDGFPRNINQA 93

Length = 211

>gnl|CDD|237746 PRK14529, PRK14529, adenylate kinase; Provisional

 Score = 47.0 bits (112), Expect = 9e-07
 Identities = 21/78 (26%), Positives = 45/78 (57%), Gaps = 3/78 (3%)

Query: 96  EMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGLLSKRLEDGYY 155
            ++ K  ++  I   +I R+ +   + L K+    ++RG++V +DI   ++ + L+    
Sbjct: 18  ALVKKKYDLAHIESGAIFREHIGGGTELGKKAKEYIDRGDLVPDDITIPMILETLKQ--- 74

Query: 156 RGEIGFILDGLPRSRIQA 173
            G+ G++LDG PR+++QA
Sbjct: 75  DGKNGWLLDGFPRNKVQA 92

Length = 223

>gnl|CDD|184729 PRK14532, PRK14532, adenylate kinase; Provisional

 Score = 45.2 bits (107), Expect = 2e-06
 Identities = 28/89 (31%), Positives = 50/89 (56%), Gaps = 2/89 (2%)

Query: 85  GSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFG 144
           G P A K   A+ L +   + ++S   ++R  ++  S L +++   ++RGE+VS++I+  
Sbjct: 7   GPPAAGKGTQAKRLVEERGMVQLSTGDMLRAAIASGSELGQRVKGIMDRGELVSDEIVIA 66

Query: 145 LLSKRLEDGYYRGEIGFILDGLPRSRIQA 173
           L+ +RL +    G  G I DG PR+  QA
Sbjct: 67  LIEERLPEAEAAG--GAIFDGFPRTVAQA 93

Length = 188

>gnl|CDD|237745 PRK14527, PRK14527, adenylate kinase; Provisional

 Score = 45.2 bits (107), Expect = 2e-06
 Identities = 25/91 (27%), Positives = 46/91 (50%), Gaps = 3/91 (3%)

Query: 83  FIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDII 142
           F+G P A K   AE L++ L + ++S   I+R  ++  + L ++    +  G++V +++I
Sbjct: 11  FLGPPGAGKGTQAERLAQELGLKKLSTGDILRDHVARGTELGQRAKPIMEAGDLVPDELI 70

Query: 143 FGLLSKRLEDGYYRGEIGFILDGLPRSRIQA 173
             L+   L        +  I DG PR+  QA
Sbjct: 71  LALIRDELAG---MEPVRVIFDGFPRTLAQA 98

Length = 191

>gnl|CDD|178435 PLN02842, PLN02842, nucleotide kinase

 Score = 44.9 bits (106), Expect = 6e-06
 Identities = 27/91 (29%), Positives = 49/91 (53%), Gaps = 5/91 (5%)

Query: 85  GSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFG 144
           G+P + K    E++     +  IS   ++R ++S  + + K+    +N G +V ++I+  
Sbjct: 4   GAPASGKGTQCELIVHKFGLVHISTGDLLRAEVSAGTDIGKRAKEFMNSGRLVPDEIVIA 63

Query: 145 LLSKRL--EDGYYRGEIGFILDGLPRSRIQA 173
           +++ RL  ED     E G++LDG PRS  QA
Sbjct: 64  MVTGRLSREDA---KEKGWLLDGYPRSFAQA 91

Length = 505

>gnl|CDD|178279 PLN02674, PLN02674, adenylate kinase

 Score = 42.6 bits (100), Expect = 3e-05
 Identities = 23/91 (25%), Positives = 52/91 (57%), Gaps = 2/91 (2%)

Query: 83  FIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDII 142
            IG P + K   + ++     +  ++   ++R  ++ ++ L  +   A+++GE+VS+D++
Sbjct: 36  LIGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLV 95

Query: 143 FGLLSKRLEDGYYRGEIGFILDGLPRSRIQA 173
            G++ + ++      + GFILDG PR+ +QA
Sbjct: 96  VGIIDEAMKKP--SCQKGFILDGFPRTVVQA 124

Length = 244

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	177
PLN02674	244	adenylate kinase	99.94
PF00406	151	ADK: Adenylate kinase; InterPro: IPR000850 Adenyla	99.94
PLN02459	261	probable adenylate kinase	99.94
PRK14529	223	adenylate kinase; Provisional	99.93
KOG3079	195	consensus Uridylate kinase/adenylate kinase [Nucle	99.92
PTZ00088	229	adenylate kinase 1; Provisional	99.92
COG0563	178	Adk Adenylate kinase and related kinases [Nucleoti	99.92
PRK13808	333	adenylate kinase; Provisional	99.91
TIGR01351	210	adk adenylate kinases. Adenylate kinase (EC 2.7.4.	99.91
PRK14526	211	adenylate kinase; Provisional	99.91
PRK14532	188	adenylate kinase; Provisional	99.91
PRK14531	183	adenylate kinase; Provisional	99.91
PRK00279	215	adk adenylate kinase; Reviewed	99.9
PRK14528	186	adenylate kinase; Provisional	99.9
PRK02496	184	adk adenylate kinase; Provisional	99.89
TIGR01359	183	UMP_CMP_kin_fam UMP-CMP kinase family. This subfam	99.89
PLN02200	234	adenylate kinase family protein	99.88
cd01428	194	ADK Adenylate kinase (ADK) catalyzes the reversibl	99.86
PRK14527	191	adenylate kinase; Provisional	99.86
KOG3078	235	consensus Adenylate kinase [Nucleotide transport a	99.85
PRK14530	215	adenylate kinase; Provisional	99.84
PLN02842	505	nucleotide kinase	99.82
TIGR01360	188	aden_kin_iso1 adenylate kinase, isozyme 1 subfamil	99.81
PRK08356	195	hypothetical protein; Provisional	99.45
PRK01184	184	hypothetical protein; Provisional	99.39
PRK08118	167	topology modulation protein; Reviewed	99.35
PRK06217	183	hypothetical protein; Validated	99.25
PRK03839	180	putative kinase; Provisional	99.22
PF13207	121	AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6	99.14
PRK07261	171	topology modulation protein; Provisional	99.06
PRK13949	169	shikimate kinase; Provisional	99.05
PHA02530	300	pseT polynucleotide kinase; Provisional	99.04
COG1102	179	Cmk Cytidylate kinase [Nucleotide transport and me	98.92
KOG3347	176	consensus Predicted nucleotide kinase/nuclear prot	98.91
PRK12339	197	2-phosphoglycerate kinase; Provisional	98.9
PRK04182	180	cytidylate kinase; Provisional	98.89
TIGR02173	171	cyt_kin_arch cytidylate kinase, putative. Proteins	98.85
PRK14730	195	coaE dephospho-CoA kinase; Provisional	98.84
PRK08233	182	hypothetical protein; Provisional	98.82
PRK13947	171	shikimate kinase; Provisional	98.82
PRK04040	188	adenylate kinase; Provisional	98.82
PRK00131	175	aroK shikimate kinase; Reviewed	98.8
cd02020	147	CMPK Cytidine monophosphate kinase (CMPK) catalyze	98.79
PRK00625	173	shikimate kinase; Provisional	98.76
PF13671	143	AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1	98.73
COG0703	172	AroK Shikimate kinase [Amino acid transport and me	98.71
cd02022	179	DPCK Dephospho-coenzyme A kinase (DPCK, EC 2.7.1.2	98.7
PRK00081	194	coaE dephospho-CoA kinase; Reviewed	98.66
cd00464	154	SK Shikimate kinase (SK) is the fifth enzyme in th	98.65
PRK13946	184	shikimate kinase; Provisional	98.64
COG0237	201	CoaE Dephospho-CoA kinase [Coenzyme metabolism]	98.61
COG0283	222	Cmk Cytidylate kinase [Nucleotide transport and me	98.57
PRK13973	213	thymidylate kinase; Provisional	98.56
PRK14734	200	coaE dephospho-CoA kinase; Provisional	98.55
TIGR00152	188	dephospho-CoA kinase. This model produces scores i	98.53
PRK13948	182	shikimate kinase; Provisional	98.53
cd02021	150	GntK Gluconate kinase (GntK) catalyzes the phospho	98.49
PRK13974	212	thymidylate kinase; Provisional	98.48
TIGR00017	217	cmk cytidylate kinase. This family consists of cyt	98.47
PRK06762	166	hypothetical protein; Provisional	98.46
smart00072	184	GuKc Guanylate kinase homologues. Active enzymes c	98.45
PRK14021	542	bifunctional shikimate kinase/3-dehydroquinate syn	98.44
PLN02199	303	shikimate kinase	98.44
PRK00023	225	cmk cytidylate kinase; Provisional	98.42
PRK06547	172	hypothetical protein; Provisional	98.42
PRK05800	170	cobU adenosylcobinamide kinase/adenosylcobinamide-	98.41
PRK03333	395	coaE dephospho-CoA kinase/protein folding accessor	98.41
PRK12338	319	hypothetical protein; Provisional	98.4
PRK03731	171	aroL shikimate kinase II; Reviewed	98.4
PLN02422	232	dephospho-CoA kinase	98.39
COG1936	180	Predicted nucleotide kinase (related to CMP and AM	98.39
PRK13951	488	bifunctional shikimate kinase/3-dehydroquinate syn	98.38
PRK13975	196	thymidylate kinase; Provisional	98.37
PRK05057	172	aroK shikimate kinase I; Reviewed	98.37
TIGR01313	163	therm_gnt_kin carbohydrate kinase, thermoresistant	98.35
PRK14733	204	coaE dephospho-CoA kinase; Provisional	98.35
PRK09518	712	bifunctional cytidylate kinase/GTPase Der; Reviewe	98.35
PTZ00451	244	dephospho-CoA kinase; Provisional	98.34
PF01121	180	CoaE: Dephospho-CoA kinase; InterPro: IPR001977 Th	98.33
TIGR00041	195	DTMP_kinase thymidylate kinase. Function: phosphor	98.33
TIGR03574	249	selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Mem	98.26
PLN02924	220	thymidylate kinase	98.25
cd02019	69	NK Nucleoside/nucleotide kinase (NK) is a protein	98.24
PRK12269	863	bifunctional cytidylate kinase/ribosomal protein S	98.24
PRK14731	208	coaE dephospho-CoA kinase; Provisional	98.23
KOG3354	191	consensus Gluconate kinase [Carbohydrate transport	98.22
PRK08154	309	anaerobic benzoate catabolism transcriptional regu	98.21
PRK13477	512	bifunctional pantoate ligase/cytidylate kinase; Pr	98.21
PF00004	132	AAA: ATPase family associated with various cellula	98.2
cd01672	200	TMPK Thymidine monophosphate kinase (TMPK), also k	98.17
PF13238	129	AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB	98.17
PRK11860	661	bifunctional 3-phosphoshikimate 1-carboxyvinyltran	98.16
TIGR02881	261	spore_V_K stage V sporulation protein K. Members o	98.15
PRK00698	205	tmk thymidylate kinase; Validated	98.13
PRK14732	196	coaE dephospho-CoA kinase; Provisional	98.11
cd00227	175	CPT Chloramphenicol (Cm) phosphotransferase (CPT).	98.07
PRK04220	301	2-phosphoglycerate kinase; Provisional	98.06
COG0572	218	Udk Uridine kinase [Nucleotide transport and metab	98.04
COG4088	261	Predicted nucleotide kinase [Nucleotide transport	98.02
smart00382	148	AAA ATPases associated with a variety of cellular	98.02
PLN02165	334	adenylate isopentenyltransferase	98.02
PRK06696	223	uridine kinase; Validated	98.02
PRK12724	432	flagellar biosynthesis regulator FlhF; Provisional	98.01
PF13401	131	AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S	98.0
PRK05541	176	adenylylsulfate kinase; Provisional	97.98
COG1618	179	Predicted nucleotide kinase [Nucleotide transport	97.97
PF01745	233	IPT: Isopentenyl transferase; InterPro: IPR002648	97.95
cd02024	187	NRK1 Nicotinamide riboside kinase (NRK) is an enzy	97.94
PF05729	166	NACHT: NACHT domain	97.94
PRK05480	209	uridine/cytidine kinase; Provisional	97.93
CHL00181	287	cbbX CbbX; Provisional	97.92
PHA00729	226	NTP-binding motif containing protein	97.91
PF06414	199	Zeta_toxin: Zeta toxin; InterPro: IPR010488 This e	97.91
TIGR01663	526	PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase	97.88
PF01583	156	APS_kinase: Adenylylsulphate kinase; InterPro: IPR	97.87
PRK12337	475	2-phosphoglycerate kinase; Provisional	97.84
PLN02840	421	tRNA dimethylallyltransferase	97.82
PF07728	139	AAA_5: AAA domain (dynein-related subfamily); Inte	97.81
PRK00091	307	miaA tRNA delta(2)-isopentenylpyrophosphate transf	97.81
TIGR00235	207	udk uridine kinase. Model contains a number of lon	97.8
PF13521	163	AAA_28: AAA domain; PDB: 1LW7_A.	97.8
PRK00889	175	adenylylsulfate kinase; Provisional	97.8
TIGR02640	262	gas_vesic_GvpN gas vesicle protein GvpN. Members o	97.78
TIGR00390	441	hslU ATP-dependent protease HslVU, ATPase subunit.	97.77
TIGR02880	284	cbbX_cfxQ probable Rubsico expression protein CbbX	97.77
COG0529	197	CysC Adenylylsulfate kinase and related kinases [I	97.72
COG2019	189	AdkA Archaeal adenylate kinase [Nucleotide transpo	97.72
PRK09183	259	transposase/IS protein; Provisional	97.72
PRK15453	290	phosphoribulokinase; Provisional	97.7
TIGR03263	180	guanyl_kin guanylate kinase. Members of this famil	97.69
cd02028	179	UMPK_like Uridine monophosphate kinase_like (UMPK_	97.67
PRK05537	568	bifunctional sulfate adenylyltransferase subunit 1	97.67
PRK14738	206	gmk guanylate kinase; Provisional	97.66
PRK05201	443	hslU ATP-dependent protease ATP-binding subunit Hs	97.66
cd02023	198	UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.	97.64
PRK07667	193	uridine kinase; Provisional	97.64
PTZ00301	210	uridine kinase; Provisional	97.63
PRK03846	198	adenylylsulfate kinase; Provisional	97.63
PRK09825	176	idnK D-gluconate kinase; Provisional	97.62
cd00009	151	AAA The AAA+ (ATPases Associated with a wide varie	97.61
PF00485	194	PRK: Phosphoribulokinase / Uridine kinase family;	97.61
TIGR02322	179	phosphon_PhnN phosphonate metabolism protein/1,5-b	97.61
PRK10078	186	ribose 1,5-bisphosphokinase; Provisional	97.61
KOG0744	423	consensus AAA+-type ATPase [Posttranslational modi	97.6
TIGR00174	287	miaA tRNA isopentenyltransferase (miaA). Catalyzes	97.59
cd02027	149	APSK Adenosine 5'-phosphosulfate kinase (APSK) cat	97.59
COG1484	254	DnaC DNA replication protein [DNA replication, rec	97.58
PF01202	158	SKI: Shikimate kinase; InterPro: IPR000623 Shikima	97.58
COG3265	161	GntK Gluconate kinase [Carbohydrate transport and	97.58
PF01695	178	IstB_IS21: IstB-like ATP binding protein; InterPro	97.58
PF05496	233	RuvB_N: Holliday junction DNA helicase ruvB N-term	97.58
PRK05439	311	pantothenate kinase; Provisional	97.57
TIGR01241	495	FtsH_fam ATP-dependent metalloprotease FtsH. HflB(	97.56
cd00544	169	CobU Adenosylcobinamide kinase / adenosylcobinamid	97.53
PRK08181	269	transposase; Validated	97.52
PLN02748	468	tRNA dimethylallyltransferase	97.52
PF08433	270	KTI12: Chromatin associated protein KTI12 ; InterP	97.52
PRK12377	248	putative replication protein; Provisional	97.51
PRK00300	205	gmk guanylate kinase; Provisional	97.49
TIGR03575	340	selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryoti	97.48
PRK11545	163	gntK gluconate kinase 1; Provisional	97.47
KOG0733	802	consensus Nuclear AAA ATPase (VCP subfamily) [Post	97.46
KOG3220	225	consensus Similar to bacterial dephospho-CoA kinas	97.46
PRK06761	282	hypothetical protein; Provisional	97.45
TIGR00455	184	apsK adenylylsulfate kinase (apsK). Important resi	97.45
PHA02575	227	1 deoxynucleoside monophosphate kinase; Provisiona	97.44
cd02025	220	PanK Pantothenate kinase (PanK) catalyzes the phos	97.43
PRK03992	389	proteasome-activating nucleotidase; Provisional	97.43
TIGR01650	327	PD_CobS cobaltochelatase, CobS subunit. This model	97.43
CHL00195	489	ycf46 Ycf46; Provisional	97.42
PF03266	168	NTPase_1: NTPase; InterPro: IPR004948 This entry r	97.42
cd02030	219	NDUO42 NADH:Ubiquinone oxioreductase, 42 kDa (NDUO	97.42
COG0645	170	Predicted kinase [General function prediction only	97.4
cd01673	193	dNK Deoxyribonucleoside kinase (dNK) catalyzes the	97.4
PRK06526	254	transposase; Provisional	97.39
smart00763	361	AAA_PrkA PrkA AAA domain. This is a family of PrkA	97.38
PRK05342	412	clpX ATP-dependent protease ATP-binding subunit Cl	97.38
PLN00020	413	ribulose bisphosphate carboxylase/oxygenase activa	97.38
TIGR01242	364	26Sp45 26S proteasome subunit P45 family. Many pro	97.36
COG2074	299	2-phosphoglycerate kinase [Carbohydrate transport	97.35
cd03115	173	SRP The signal recognition particle (SRP) mediates	97.35
PRK08099	399	bifunctional DNA-binding transcriptional repressor	97.34
PRK07429	327	phosphoribulokinase; Provisional	97.33
PF13173	128	AAA_14: AAA domain	97.33
TIGR00554	290	panK_bact pantothenate kinase, bacterial type. Sho	97.32
PRK14737	186	gmk guanylate kinase; Provisional	97.3
PHA02244	383	ATPase-like protein	97.3
COG2256	436	MGS1 ATPase related to the helicase subunit of the	97.29
PRK08533	230	flagellar accessory protein FlaH; Reviewed	97.29
TIGR00382	413	clpX endopeptidase Clp ATP-binding regulatory subu	97.28
PTZ00454	398	26S protease regulatory subunit 6B-like protein; P	97.28
CHL00176	638	ftsH cell division protein; Validated	97.27
cd01124	187	KaiC KaiC is a circadian clock protein primarily f	97.25
PRK06921	266	hypothetical protein; Provisional	97.24
COG0466	782	Lon ATP-dependent Lon protease, bacterial type [Po	97.24
COG0324	308	MiaA tRNA delta(2)-isopentenylpyrophosphate transf	97.22
cd02029	277	PRK_like Phosphoribulokinase-like (PRK-like) is a	97.22
TIGR00635	305	ruvB Holliday junction DNA helicase, RuvB subunit.	97.22
TIGR01243	733	CDC48 AAA family ATPase, CDC48 subfamily. This sub	97.22
PF06745	226	KaiC: KaiC; InterPro: IPR014774 This entry represe	97.21
TIGR01526	325	nadR_NMN_Atrans nicotinamide-nucleotide adenylyltr	97.21
TIGR02655	484	circ_KaiC circadian clock protein KaiC. Members of	97.21
TIGR03015	269	pepcterm_ATPase putative secretion ATPase, PEP-CTE	97.21
PF03029	238	ATP_bind_1: Conserved hypothetical ATP binding pro	97.2
KOG0737	386	consensus AAA+-type ATPase [Posttranslational modi	97.19
PLN02348	395	phosphoribulokinase	97.19
PF07724	171	AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR	97.19
TIGR02928	365	orc1/cdc6 family replication initiation protein. M	97.17
PRK04195	482	replication factor C large subunit; Provisional	97.17
PF01591	222	6PF2K: 6-phosphofructo-2-kinase; InterPro: IPR0130	97.16
PF07931	174	CPT: Chloramphenicol phosphotransferase-like prote	97.16
PRK13342	413	recombination factor protein RarA; Reviewed	97.15
PRK06067	234	flagellar accessory protein FlaH; Validated	97.15
KOG0731	774	consensus AAA+-type ATPase containing the peptidas	97.14
PF00910	107	RNA_helicase: RNA helicase; InterPro: IPR000605 He	97.14
PF00931	287	NB-ARC: NB-ARC domain; InterPro: IPR002182 This is	97.13
cd00071	137	GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.	97.12
PRK00080	328	ruvB Holliday junction DNA helicase RuvB; Reviewed	97.12
TIGR00064	272	ftsY signal recognition particle-docking protein F	97.12
TIGR03420	226	DnaA_homol_Hda DnaA regulatory inactivator Hda. Me	97.12
TIGR00150	133	HI0065_YjeE ATPase, YjeE family. Members of this f	97.12
COG1428	216	Deoxynucleoside kinases [Nucleotide transport and	97.11
PF08477	119	Miro: Miro-like protein; InterPro: IPR013684 Mitoc	97.1
PRK09087	226	hypothetical protein; Validated	97.1
PF08303	168	tRNA_lig_kinase: tRNA ligase kinase domain; InterP	97.1
PTZ00361	438	26 proteosome regulatory subunit 4-like protein; P	97.1
PF00448	196	SRP54: SRP54-type protein, GTPase domain; InterPro	97.1
PRK00411	394	cdc6 cell division control protein 6; Reviewed	97.1
PRK08116	268	hypothetical protein; Validated	97.1
COG1223	368	Predicted ATPase (AAA+ superfamily) [General funct	97.09
PRK08903	227	DnaA regulatory inactivator Hda; Validated	97.08
PLN02796	347	D-glycerate 3-kinase	97.07
PRK14729	300	miaA tRNA delta(2)-isopentenylpyrophosphate transf	97.07
TIGR03877	237	thermo_KaiC_1 KaiC domain protein, Ph0284 family.	97.07
PF02223	186	Thymidylate_kin: Thymidylate kinase; InterPro: IPR	97.06
COG1222	406	RPT1 ATP-dependent 26S proteasome regulatory subun	97.06
PRK06620	214	hypothetical protein; Validated	97.06
COG1219	408	ClpX ATP-dependent protease Clp, ATPase subunit [P	97.05
KOG0730	693	consensus AAA+-type ATPase [Posttranslational modi	97.03
PRK09270	229	nucleoside triphosphate hydrolase domain-containin	97.02
PRK06835	329	DNA replication protein DnaC; Validated	97.02
COG0125	208	Tmk Thymidylate kinase [Nucleotide transport and m	97.01
PRK12402	337	replication factor C small subunit 2; Reviewed	97.01
PRK13976	209	thymidylate kinase; Provisional	97.0
PRK07952	244	DNA replication protein DnaC; Validated	97.0
COG1220	444	HslU ATP-dependent protease HslVU (ClpYQ), ATPase	97.0
PRK06893	229	DNA replication initiation factor; Validated	96.99
KOG2004	906	consensus Mitochondrial ATP-dependent protease PIM	96.98
COG2255	332	RuvB Holliday junction resolvasome, helicase subun	96.98
COG0464	494	SpoVK ATPases of the AAA+ class [Posttranslational	96.97
PRK04328	249	hypothetical protein; Provisional	96.97
PF07726	131	AAA_3: ATPase family associated with various cellu	96.96
PF10662	143	PduV-EutP: Ethanolamine utilisation - propanediol	96.95
PRK08939	306	primosomal protein DnaI; Reviewed	96.94
PF13245	76	AAA_19: Part of AAA domain	96.94
TIGR00763	775	lon ATP-dependent protease La. This protein is ind	96.94
cd01120	165	RecA-like_NTPases RecA-like NTPases. This family i	96.91
cd02026	273	PRK Phosphoribulokinase (PRK) is an enzyme involve	96.91
KOG0739	439	consensus AAA+-type ATPase [Posttranslational modi	96.9
PRK13695	174	putative NTPase; Provisional	96.9
PF03215	519	Rad17: Rad17 cell cycle checkpoint protein	96.9
TIGR03881	229	KaiC_arch_4 KaiC domain protein, PAE1156 family. M	96.89
PRK08084	235	DNA replication initiation factor; Provisional	96.89
KOG0735	952	consensus AAA+-type ATPase [Posttranslational modi	96.88
PRK05506	632	bifunctional sulfate adenylyltransferase subunit 1	96.88
cd04163	168	Era Era subfamily. Era (E. coli Ras-like protein)	96.87
PLN03046	460	D-glycerate 3-kinase; Provisional	96.86
KOG0733	802	consensus Nuclear AAA ATPase (VCP subfamily) [Post	96.85
CHL00206	2281	ycf2 Ycf2; Provisional	96.84
cd01131	198	PilT Pilus retraction ATPase PilT. PilT is a nucle	96.84
TIGR00678	188	holB DNA polymerase III, delta' subunit. At positi	96.84
COG4639	168	Predicted kinase [General function prediction only	96.84
PF00625	183	Guanylate_kin: Guanylate kinase; InterPro: IPR0081	96.84
TIGR01243	733	CDC48 AAA family ATPase, CDC48 subfamily. This sub	96.83
PRK12723	388	flagellar biosynthesis regulator FlhF; Provisional	96.83
TIGR03689	512	pup_AAA proteasome ATPase. In the Actinobacteria,	96.82
KOG1532	366	consensus GTPase XAB1, interacts with DNA repair p	96.81
PLN03025	319	replication factor C subunit; Provisional	96.8
COG0714	329	MoxR-like ATPases [General function prediction onl	96.8
PRK11034	758	clpA ATP-dependent Clp protease ATP-binding subuni	96.79
PF13189	179	Cytidylate_kin2: Cytidylate kinase-like family; PD	96.78
PLN02318	656	phosphoribulokinase/uridine kinase	96.78
PRK14961	363	DNA polymerase III subunits gamma and tau; Provisi	96.77
) proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor" target="_blank" href="http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=PF06309">PF06309	127	Torsin: Torsin; InterPro: IPR010448 This family co	96.77
PRK11331	459	5-methylcytosine-specific restriction enzyme subun	96.77
PRK04301	317	radA DNA repair and recombination protein RadA; Va	96.76
PF13191	185	AAA_16: AAA ATPase domain; PDB: 2V1U_A.	96.75
PRK14962	472	DNA polymerase III subunits gamma and tau; Provisi	96.73
cd04155	173	Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf f	96.72
PF01078	206	Mg_chelatase: Magnesium chelatase, subunit ChlI; I	96.71
TIGR02639	731	ClpA ATP-dependent Clp protease ATP-binding subuni	96.71
PRK12323	700	DNA polymerase III subunits gamma and tau; Provisi	96.7
cd04119	168	RJL RJL (RabJ-Like) subfamily. RJLs are found in m	96.69
PRK09302	509	circadian clock protein KaiC; Reviewed	96.68
COG1224	450	TIP49 DNA helicase TIP49, TBP-interacting protein	96.67
PRK10787	784	DNA-binding ATP-dependent protease La; Provisional	96.67
PF13479	213	AAA_24: AAA domain	96.67
COG0194	191	Gmk Guanylate kinase [Nucleotide transport and met	96.67
TIGR02655	484	circ_KaiC circadian clock protein KaiC. Members of	96.67
PHA02544	316	44 clamp loader, small subunit; Provisional	96.66
PRK13341	725	recombination factor protein RarA/unknown domain f	96.65
TIGR00101	199	ureG urease accessory protein UreG. This model rep	96.65
PF01926	116	MMR_HSR1: 50S ribosome-binding GTPase; InterPro: I	96.63
cd01393	226	recA_like RecA is a bacterial enzyme which has rol	96.63
PRK05416	288	glmZ(sRNA)-inactivating NTPase; Provisional	96.63
KOG0745	564	consensus Putative ATP-dependent Clp-type protease	96.62
cd04138	162	H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras,	96.61
KOG1533	290	consensus Predicted GTPase [General function predi	96.61
PRK14722	374	flhF flagellar biosynthesis regulator FlhF; Provis	96.61
KOG0991	333	consensus Replication factor C, subunit RFC2 [Repl	96.6
TIGR02237	209	recomb_radB DNA repair and recombination protein R	96.59
PRK10751	173	molybdopterin-guanine dinucleotide biosynthesis pr	96.59
PRK15455	644	PrkA family serine protein kinase; Provisional	96.58
TIGR00362	405	DnaA chromosomal replication initiator protein Dna	96.58
smart00175	164	RAB Rab subfamily of small GTPases. Rab GTPases ar	96.57
TIGR00231	161	small_GTP small GTP-binding protein domain. This m	96.57
cd00154	159	Rab Rab family. Rab GTPases form the largest famil	96.57
PRK06645	507	DNA polymerase III subunits gamma and tau; Validat	96.57
KOG3877	393	consensus NADH:ubiquinone oxidoreductase, NDUFA10/	96.57
KOG0989	346	consensus Replication factor C, subunit RFC4 [Repl	96.56
smart00173	164	RAS Ras subfamily of RAS small GTPases. Similar in	96.55
KOG0738	491	consensus AAA+-type ATPase [Posttranslational modi	96.55
PRK10416	318	signal recognition particle-docking protein FtsY;	96.55
PRK10867	433	signal recognition particle protein; Provisional	96.54
PF00308	219	Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013	96.54
PF06068	398	TIP49: TIP49 C-terminus; InterPro: IPR010339 This	96.54
TIGR02525	372	plasmid_TraJ plasmid transfer ATPase TraJ. Members	96.53
cd00157	171	Rho Rho (Ras homology) family. Members of the Rho	96.53
PRK05707	328	DNA polymerase III subunit delta'; Validated	96.52
PRK07003	830	DNA polymerase III subunits gamma and tau; Validat	96.52
PRK10733	644	hflB ATP-dependent metalloprotease; Reviewed	96.51
PRK14974	336	cell division protein FtsY; Provisional	96.51
cd04136	163	Rap_like Rap-like subfamily. The Rap subfamily con	96.5
cd01123	235	Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of r	96.49
PRK14086	617	dnaA chromosomal replication initiation protein; P	96.49
TIGR00959	428	ffh signal recognition particle protein. This mode	96.49
PRK14956	484	DNA polymerase III subunits gamma and tau; Provisi	96.48
PRK09435	332	membrane ATPase/protein kinase; Provisional	96.47
COG4619	223	ABC-type uncharacterized transport system, ATPase	96.46
cd04113	161	Rab4 Rab4 subfamily. Rab4 has been implicated in n	96.46
PRK10575	265	iron-hydroxamate transporter ATP-binding subunit;	96.46
TIGR03499	282	FlhF flagellar biosynthetic protein FlhF.	96.45
TIGR03880	224	KaiC_arch_3 KaiC domain protein, AF_0351 family. T	96.45
PF01443	234	Viral_helicase1: Viral (Superfamily 1) RNA helicas	96.45
KOG0734	752	consensus AAA+-type ATPase containing the peptidas	96.45
cd01862	172	Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase th	96.45
PRK05642	234	DNA replication initiation factor; Validated	96.44
PRK07933	213	thymidylate kinase; Validated	96.43
cd01130	186	VirB11-like_ATPase Type IV secretory pathway compo	96.43
cd01394	218	radB RadB. The archaeal protein radB shares simila	96.42
PRK14264	305	phosphate ABC transporter ATP-binding protein; Pro	96.4
cd00876	160	Ras Ras family. The Ras family of the Ras superfam	96.4
cd01895	174	EngA2 EngA2 subfamily. This CD represents the seco	96.4
PRK14963	504	DNA polymerase III subunits gamma and tau; Provisi	96.4
PF03205	140	MobB: Molybdopterin guanine dinucleotide synthesis	96.39
KOG3308	225	consensus Uncharacterized protein of the uridine k	96.38
PTZ00322	664	6-phosphofructo-2-kinase/fructose-2,6-biphosphatas	96.38
KOG1969	877	consensus DNA replication checkpoint protein CHL12	96.38
KOG0743	457	consensus AAA+-type ATPase [Posttranslational modi	96.38
KOG1970	634	consensus Checkpoint RAD17-RFC complex, RAD17/RAD2	96.38
TIGR03345	852	VI_ClpV1 type VI secretion ATPase, ClpV1 family. M	96.38
PRK14955	397	DNA polymerase III subunits gamma and tau; Provisi	96.36
cd01128	249	rho_factor Transcription termination factor rho is	96.35
cd04164	157	trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein	96.34
TIGR01618	220	phage_P_loop phage nucleotide-binding protein. Thi	96.34
PF00005	137	ABC_tran: ABC transporter This structure is on hol	96.32
PRK07940	394	DNA polymerase III subunit delta'; Validated	96.31
PRK14964	491	DNA polymerase III subunits gamma and tau; Provisi	96.31
cd01867	167	Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Yp	96.3
cd04145	164	M_R_Ras_like M-Ras/R-Ras-like subfamily. This subf	96.3
cd00879	190	Sar1 Sar1 subfamily. Sar1 is an essential componen	96.3
cd04139	164	RalA_RalB RalA/RalB subfamily. The Ral (Ras-like)	96.3
COG0470	325	HolB ATPase involved in DNA replication [DNA repli	96.3
TIGR00750	300	lao LAO/AO transport system ATPase. Mutations have	96.3
PRK05973	237	replicative DNA helicase; Provisional	96.3
TIGR02639	731	ClpA ATP-dependent Clp protease ATP-binding subuni	96.29
cd01983	99	Fer4_NifH The Fer4_NifH superfamily contains a var	96.27
cd01918	149	HprK_C HprK/P, the bifunctional histidine-containi	96.27
TIGR02788	308	VirB11 P-type DNA transfer ATPase VirB11. The VirB	96.27
TIGR01420	343	pilT_fam pilus retraction protein PilT. This model	96.26
cd04137	180	RheB Rheb (Ras Homolog Enriched in Brain) subfamil	96.26
PRK12422	445	chromosomal replication initiation protein; Provis	96.26
PRK14957	546	DNA polymerase III subunits gamma and tau; Provisi	96.26
PRK13768	253	GTPase; Provisional	96.25
cd04115	170	Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is u	96.25
COG1855	604	ATPase (PilT family) [General function prediction	96.25
PRK00771	437	signal recognition particle protein Srp54; Provisi	96.24
PF13086	236	AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV	96.24
PRK14949	944	DNA polymerase III subunits gamma and tau; Provisi	96.23
PRK05564	313	DNA polymerase III subunit delta'; Validated	96.22
PRK14969	527	DNA polymerase III subunits gamma and tau; Provisi	96.22
cd04160	167	Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related prote	96.22
cd04124	161	RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily	96.22
TIGR01166	190	cbiO cobalt transport protein ATP-binding subunit.	96.21
PRK14490	369	putative bifunctional molybdopterin-guanine dinucl	96.21
PRK07764	824	DNA polymerase III subunits gamma and tau; Validat	96.21
PRK14958	509	DNA polymerase III subunits gamma and tau; Provisi	96.21
cd03264	211	ABC_drug_resistance_like ABC-type multidrug transp	96.21
PRK14960	702	DNA polymerase III subunits gamma and tau; Provisi	96.21
cd04177	168	RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the	96.2
cd01860	163	Rab5_related Rab5-related subfamily. This subfamil	96.2
PRK00440	319	rfc replication factor C small subunit; Reviewed	96.2
TIGR02782	299	TrbB_P P-type conjugative transfer ATPase TrbB. Th	96.2
cd04123	162	Rab21 Rab21 subfamily. The localization and functi	96.18
cd03292	214	ABC_FtsE_transporter FtsE is a hydrophilic nucleot	96.18
CHL00095	821	clpC Clp protease ATP binding subunit	96.18
cd03116	159	MobB Molybdenum is an essential trace element in t	96.17
PF03308	266	ArgK: ArgK protein; InterPro: IPR005129 Bacterial	96.17
COG5192	1077	BMS1 GTP-binding protein required for 40S ribosome	96.17
PRK04296	190	thymidine kinase; Provisional	96.16
cd03262	213	ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-	96.16
TIGR00073	207	hypB hydrogenase accessory protein HypB. HypB is i	96.15
cd00820	107	PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPC	96.15
cd03263	220	ABC_subfamily_A The ABCA subfamily mediates the tr	96.14
TIGR02236	310	recomb_radA DNA repair and recombination protein R	96.14
cd03224	222	ABC_TM1139_LivF_branched LivF (TM1139) is part of	96.14
KOG0736	953	consensus Peroxisome assembly factor 2 containing	96.13
cd03255	218	ABC_MJ0796_Lo1CDE_FtsE This family is comprised of	96.13
PRK14088	440	dnaA chromosomal replication initiation protein; P	96.13
COG1126	240	GlnQ ABC-type polar amino acid transport system, A	96.12
TIGR03608	206	L_ocin_972_ABC putative bacteriocin export ABC tra	96.12
cd03301	213	ABC_MalK_N The N-terminal ATPase domain of the mal	96.11
smart00178	184	SAR Sar1p-like members of the Ras-family of small	96.11
PRK10865	857	protein disaggregation chaperone; Provisional	96.11
cd01864	165	Rab19 Rab19 subfamily. Rab19 proteins are associat	96.11
TIGR00960	216	3a0501s02 Type II (General) Secretory Pathway (IIS	96.11
cd01863	161	Rab18 Rab18 subfamily. Mammalian Rab18 is implicat	96.1
TIGR02315	243	ABC_phnC phosphonate ABC transporter, ATP-binding	96.1
PF00437	270	T2SE: Type II/IV secretion system protein; InterPr	96.09
cd03219	236	ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans	96.09
PF00025	175	Arf: ADP-ribosylation factor family The prints ent	96.08
cd03258	233	ABC_MetN_methionine_transporter MetN (also known a	96.08
cd04154	173	Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are	96.08
PRK09361	225	radB DNA repair and recombination protein RadB; Pr	96.08
TIGR02012	321	tigrfam_recA protein RecA. This model describes or	96.07
TIGR02673	214	FtsE cell division ATP-binding protein FtsE. This	96.07
cd03225	211	ABC_cobalt_CbiO_domain1 Domain I of the ABC compon	96.07
PRK13833	323	conjugal transfer protein TrbB; Provisional	96.07
cd03259	213	ABC_Carb_Solutes_like ABC Carbohydrate and Solute	96.06
PRK08727	233	hypothetical protein; Validated	96.06
cd01870	175	RhoA_like RhoA-like subfamily. The RhoA subfamily	96.06
COG0542	786	clpA ATP-binding subunits of Clp protease and DnaK	96.05
cd01868	165	Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 a	96.05
cd04127	180	Rab27A Rab27a subfamily. The Rab27a subfamily cons	96.04
cd03256	241	ABC_PhnC_transporter ABC-type phosphate/phosphonat	96.04
cd03269	210	ABC_putative_ATPase This subfamily is involved in	96.04
PF02367	123	UPF0079: Uncharacterised P-loop hydrolase UPF0079;	96.04
cd04135	174	Tc10 TC10 subfamily. TC10 is a Rho family protein	96.04
TIGR01425	429	SRP54_euk signal recognition particle protein SRP5	96.04
cd04159	159	Arl10_like Arl10-like subfamily. Arl9/Arl10 was id	96.03
cd04101	164	RabL4 RabL4 (Rab-like4) subfamily. RabL4s are nove	96.03
KOG3327	208	consensus Thymidylate kinase/adenylate kinase [Nuc	96.03
PRK09302	509	circadian clock protein KaiC; Reviewed	96.03
TIGR03878	259	thermo_KaiC_2 KaiC domain protein, AF_0795 family.	96.03
PF04665	241	Pox_A32: Poxvirus A32 protein; InterPro: IPR006758	96.03
cd00983	325	recA RecA is a bacterial enzyme which has roles in	96.03
PHA02624	647	large T antigen; Provisional	96.02
COG1122	235	CbiO ABC-type cobalt transport system, ATPase comp	96.02
PF00071	162	Ras: Ras family; InterPro: IPR001806 Small GTPases	96.02
cd03218	232	ABC_YhbG The ABC transporters belonging to the Yhb	96.02
cd01122	271	GP4d_helicase GP4d_helicase is a homohexameric 5'-	96.01
PRK11264	250	putative amino-acid ABC transporter ATP-binding pr	96.01
cd03257	228	ABC_NikE_OppD_transporters The ABC transporter sub	96.01
cd03261	235	ABC_Org_Solvent_Resistant ABC (ATP-binding cassett	96.0
TIGR03345	852	VI_ClpV1 type VI secretion ATPase, ClpV1 family. M	96.0
cd04114	169	Rab30 Rab30 subfamily. Rab30 appears to be associa	96.0
TIGR00176	155	mobB molybdopterin-guanine dinucleotide biosynthes	96.0
cd01869	166	Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in ev	96.0
cd01865	165	Rab3 Rab3 subfamily. The Rab3 subfamily contains R	96.0
COG1100	219	GTPase SAR1 and related small G proteins [General	95.99
TIGR02211	221	LolD_lipo_ex lipoprotein releasing system, ATP-bin	95.99
cd01861	161	Rab6 Rab6 subfamily. Rab6 is involved in microtubu	95.99
PHA03132	580	thymidine kinase; Provisional	95.98
COG3911	183	Predicted ATPase [General function prediction only	95.98
COG0378	202	HypB Ni2+-binding GTPase involved in regulation of	95.98
TIGR03410	230	urea_trans_UrtE urea ABC transporter, ATP-binding	95.98
PRK13541	195	cytochrome c biogenesis protein CcmA; Provisional	95.97
TIGR01978	243	sufC FeS assembly ATPase SufC. SufC is part of the	95.97
cd03229	178	ABC_Class3 This class is comprised of all BPD (Bin	95.96
PRK10865	857	protein disaggregation chaperone; Provisional	95.95
PRK10247	225	putative ABC transporter ATP-binding protein YbbL;	95.95
cd03260	227	ABC_PstB_phosphate_transporter Phosphate uptake is	95.94
cd03247	178	ABCC_cytochrome_bd The CYD subfamily implicated in	95.93
COG1124	252	DppF ABC-type dipeptide/oligopeptide/nickel transp	95.93
cd01878	204	HflX HflX subfamily. A distinct conserved domain w	95.92
cd03226	205	ABC_cobalt_CbiO_domain2 Domain II of the ABC compo	95.92
cd03235	213	ABC_Metallic_Cations ABC component of the metal-ty	95.92
PRK11629	233	lolD lipoprotein transporter ATP-binding subunit;	95.91
PRK14247	250	phosphate ABC transporter ATP-binding protein; Pro	95.9
cd03238	176	ABC_UvrA The excision repair protein UvrA; Nucleot	95.9
cd03293	220	ABC_NrtD_SsuB_transporters NrtD and SsuB are the A	95.9
TIGR03864	236	PQQ_ABC_ATP ABC transporter, ATP-binding subunit,	95.9
cd04116	170	Rab9 Rab9 subfamily. Rab9 is found in late endosom	95.9
cd04156	160	ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor su	95.89
TIGR00416	454	sms DNA repair protein RadA. The gene protuct code	95.89
cd03296	239	ABC_CysA_sulfate_importer Part of the ABC transpor	95.89
PRK07994	647	DNA polymerase III subunits gamma and tau; Validat	95.89
cd03230	173	ABC_DR_subfamily_A This family of ATP-binding prot	95.88
PTZ00035	337	Rad51 protein; Provisional	95.88
PRK00149	450	dnaA chromosomal replication initiation protein; R	95.88

>PLN02674 adenylate kinase

Probab=99.94  E-value=9e-27  Score=196.04  Aligned_cols=98  Identities=23%  Similarity=0.486  Sum_probs=93.1

Q ss_pred             CCeEEEEEcCCCCCchHHHHHHHHHhCCCeeeCchhhhhccCCCCchHHHHHHHHHcCCcchHHHHHHHHHHHHHccCCC
Q 030464           77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGLLSKRLEDGYYR  156 (177)
Q Consensus        77 ~~~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~dLlr~el~~~s~lgk~i~~~l~~G~~Ipdeli~~Ll~~~L~~~~~~  156 (177)
                      ..++|+|+|||||||+|+|+.||++||++|||+|+++|++++.++++|+.+++++++|+.|||+++.+++.++|.+.++ 
T Consensus        30 ~~~~i~l~G~PGsGKgT~a~~La~~~~~~his~GdllR~~i~~~s~~g~~i~~~~~~G~lvpd~iv~~lv~~~l~~~~~-  108 (244)
T PLN02674         30 PDKRLILIGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKKPSC-  108 (244)
T ss_pred             cCceEEEECCCCCCHHHHHHHHHHHcCCcEEchhHHHHHHHhccChhhHHHHHHHHcCCccCHHHHHHHHHHHHhCcCc-
Confidence            3578999999999999999999999999999999999999999999999999999999999999999999999998875 


Q ss_pred             CcceEEEeCCCCCHHHHHhc
Q 030464          157 GEIGFILDGLPRSRIQATIS  176 (177)
Q Consensus       157 ~~~G~ILDGfPrt~~QAe~L  176 (177)
                       .+||||||||||..||+.|
T Consensus       109 -~~g~ilDGfPRt~~Qa~~l  127 (244)
T PLN02674        109 -QKGFILDGFPRTVVQAQKL  127 (244)
T ss_pred             -CCcEEEeCCCCCHHHHHHH
Confidence             5899999999999999965

>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells

Probab=99.94  E-value=8.4e-27  Score=180.38  Aligned_cols=92  Identities=35%  Similarity=0.565  Sum_probs=85.2

Q ss_pred             EEcCCCCCchHHHHHHHHHhCCCeeeCchhhhhccCCCCchHHHHHHHHHcCCcchHHHHHHHHHHHHHccCCCCcceEE
Q 030464           83 FIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGLLSKRLEDGYYRGEIGFI  162 (177)
Q Consensus        83 IiGpPGSGKSTlA~~LAk~lgl~~Is~~dLlr~el~~~s~lgk~i~~~l~~G~~Ipdeli~~Ll~~~L~~~~~~~~~G~I  162 (177)
                      |+|||||||+|+|++||++||++||++++++|+++..++++|+++++++.+|+.||++++.++++++|.+..  ..+|||
T Consensus         1 i~G~PgsGK~t~~~~la~~~~~~~is~~~llr~~~~~~s~~g~~i~~~l~~g~~vp~~~v~~ll~~~l~~~~--~~~g~i   78 (151)
T PF00406_consen    1 ILGPPGSGKGTQAKRLAKRYGLVHISVGDLLREEIKSDSELGKQIQEYLDNGELVPDELVIELLKERLEQPP--CNRGFI   78 (151)
T ss_dssp             EEESTTSSHHHHHHHHHHHHTSEEEEHHHHHHHHHHTTSHHHHHHHHHHHTTSS--HHHHHHHHHHHHHSGG--TTTEEE
T ss_pred             CcCCCCCChHHHHHHHHHhcCcceechHHHHHHHHhhhhHHHHHHHHHHHhhccchHHHHHHHHHHHHhhhc--ccceee
Confidence            689999999999999999999999999999999999999999999999999999999999999999999883  479999


Q ss_pred             EeCCCCCHHHHHhc
Q 030464          163 LDGLPRSRIQATIS  176 (177)
Q Consensus       163 LDGfPrt~~QAe~L  176 (177)
                      |||||||..||+.|
T Consensus        79 ldGfPrt~~Qa~~l   92 (151)
T PF00406_consen   79 LDGFPRTLEQAEAL   92 (151)
T ss_dssp             EESB-SSHHHHHHH
T ss_pred             eeeccccHHHHHHH
Confidence            99999999999875

Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....

>PLN02459 probable adenylate kinase

Probab=99.94  E-value=1.7e-26  Score=195.92  Aligned_cols=100  Identities=49%  Similarity=0.821  Sum_probs=93.0

Q ss_pred             CCeEEEEEcCCCCCchHHHHHHHHHhCCCeeeCchhhhhccCCCCchHHHHHHHHHcCCcchHHHHHHHHHHHHHccCCC
Q 030464           77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGLLSKRLEDGYYR  156 (177)
Q Consensus        77 ~~~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~dLlr~el~~~s~lgk~i~~~l~~G~~Ipdeli~~Ll~~~L~~~~~~  156 (177)
                      ++++|+|+|||||||+|+|+.||+.+|++||++++++|+++..++++|+.++.++.+|.+|||+++.++|+++|.+....
T Consensus        28 ~~~~ii~~G~PGsGK~T~a~~la~~~~~~~is~gdllR~ei~~~t~lg~~i~~~~~~G~lVPdeiv~~ll~~~l~~~~~~  107 (261)
T PLN02459         28 RNVNWVFLGCPGVGKGTYASRLSKLLGVPHIATGDLVREEIKSSGPLGAQLKEIVNQGKLVPDEIIFSLLSKRLEAGEEE  107 (261)
T ss_pred             CccEEEEECCCCCCHHHHHHHHHHHhCCcEEeCcHHHHHHHhccchhHHHHHHHHHcCCccCHHHHHHHHHHHHhccccc
Confidence            55789999999999999999999999999999999999999999999999999999999999999999999999875211


Q ss_pred             CcceEEEeCCCCCHHHHHhc
Q 030464          157 GEIGFILDGLPRSRIQATIS  176 (177)
Q Consensus       157 ~~~G~ILDGfPrt~~QAe~L  176 (177)
                      ..+||||||||||..||+.|
T Consensus       108 ~~~g~iLDGFPRt~~Qa~~L  127 (261)
T PLN02459        108 GESGFILDGFPRTVRQAEIL  127 (261)
T ss_pred             CCceEEEeCCCCCHHHHHHH
Confidence            46899999999999999986

>PRK14529 adenylate kinase; Provisional

Probab=99.93  E-value=1e-25  Score=187.32  Aligned_cols=95  Identities=23%  Similarity=0.462  Sum_probs=90.8

Q ss_pred             eEEEEEcCCCCCchHHHHHHHHHhCCCeeeCchhhhhccCCCCchHHHHHHHHHcCCcchHHHHHHHHHHHHHccCCCCc
Q 030464           79 VHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGLLSKRLEDGYYRGE  158 (177)
Q Consensus        79 ~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~dLlr~el~~~s~lgk~i~~~l~~G~~Ipdeli~~Ll~~~L~~~~~~~~  158 (177)
                      ++|+|+|+|||||||+|+.|++.|+++|+|+++++|+++...+++++.+++++.+|..+|++++.+++.++|.+.+   .
T Consensus         1 m~I~l~G~PGsGK~T~a~~La~~~~~~~is~gdllr~~i~~~t~lg~~i~~~i~~G~lvpdei~~~lv~~~l~~~~---~   77 (223)
T PRK14529          1 MNILIFGPNGSGKGTQGALVKKKYDLAHIESGAIFREHIGGGTELGKKAKEYIDRGDLVPDDITIPMILETLKQDG---K   77 (223)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHCCCCcccchhhhhhccCCChHHHHHHHHHhccCcchHHHHHHHHHHHHhccC---C
Confidence            4799999999999999999999999999999999999999999999999999999999999999999999998875   5


Q ss_pred             ceEEEeCCCCCHHHHHhc
Q 030464          159 IGFILDGLPRSRIQATIS  176 (177)
Q Consensus       159 ~G~ILDGfPrt~~QAe~L  176 (177)
                      +||||||||||.+||+.|
T Consensus        78 ~g~iLDGfPRt~~Qa~~l   95 (223)
T PRK14529         78 NGWLLDGFPRNKVQAEKL   95 (223)
T ss_pred             CcEEEeCCCCCHHHHHHH
Confidence            899999999999999975

>KOG3079 consensus Uridylate kinase/adenylate kinase [Nucleotide transport and metabolism]

Probab=99.92  E-value=4.8e-25  Score=178.16  Aligned_cols=100  Identities=20%  Similarity=0.340  Sum_probs=93.0

Q ss_pred             ccCCCeEEEEEcCCCCCchHHHHHHHHHhCCCeeeCchhhhhccCC-CCchHHHHHHHHHcCCcchHHHHHHHHHHHHHc
Q 030464           74 ERRRGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSP-RSSLHKQIANAVNRGEVVSEDIIFGLLSKRLED  152 (177)
Q Consensus        74 ~~~~~~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~dLlr~el~~-~s~lgk~i~~~l~~G~~Ipdeli~~Ll~~~L~~  152 (177)
                      .+.++++|+|+|+|||||.|+|.+++++||+.|+|+|||||++++. .++.|+.++++|++|..||.+++..||++.|.+
T Consensus         4 ~~~~~~IifVlGGPGsgKgTqC~kiv~ky~ftHlSaGdLLR~E~~~~gse~g~~I~~~i~~G~iVP~ei~~~LL~~am~~   83 (195)
T KOG3079|consen    4 KLDKPPIIFVLGGPGSGKGTQCEKIVEKYGFTHLSAGDLLRAEIASAGSERGALIKEIIKNGDLVPVEITLSLLEEAMRS   83 (195)
T ss_pred             cccCCCEEEEEcCCCCCcchHHHHHHHHcCceeecHHHHHHHHHccccChHHHHHHHHHHcCCcCcHHHHHHHHHHHHHh
Confidence            3467889999999999999999999999999999999999999988 899999999999999999999999999999998


Q ss_pred             cCCCCcceEEEeCCCCCHHHHHh
Q 030464          153 GYYRGEIGFILDGLPRSRIQATI  175 (177)
Q Consensus       153 ~~~~~~~G~ILDGfPrt~~QAe~  175 (177)
                      ..  ..+||+||||||+.+|++.
T Consensus        84 ~~--~~~~fLIDGyPR~~~q~~~  104 (195)
T KOG3079|consen   84 SG--DSNGFLIDGYPRNVDQLVE  104 (195)
T ss_pred             cC--CCCeEEecCCCCChHHHHH
Confidence            75  3467999999999999875

>PTZ00088 adenylate kinase 1; Provisional

Probab=99.92  E-value=6e-25  Score=183.20  Aligned_cols=99  Identities=26%  Similarity=0.521  Sum_probs=92.5

Q ss_pred             CCCeEEEEEcCCCCCchHHHHHHHHHhCCCeeeCchhhhhccCCCCchHHHHHHHHHcCCcchHHHHHHHHHHHHHc--c
Q 030464           76 RRGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGLLSKRLED--G  153 (177)
Q Consensus        76 ~~~~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~dLlr~el~~~s~lgk~i~~~l~~G~~Ipdeli~~Ll~~~L~~--~  153 (177)
                      ..+++|+|+|||||||||+|+.||++||++||++|+++|+++..++++++.+++++++|..+||+++.+++.+++.+  .
T Consensus         4 ~~~mrIvl~G~PGsGK~T~a~~La~~~g~~~is~gdllr~~~~~~t~lg~~i~~~~~~G~lvpd~iv~~lv~~~l~~~~~   83 (229)
T PTZ00088          4 KGPLKIVLFGAPGVGKGTFAEILSKKENLKHINMGNILREEIKAKTTIGKEIQKVVTSGNLVPDNLVIAIVKDEIAKVTD   83 (229)
T ss_pred             CCCceEEEECCCCCCHHHHHHHHHHHhCCcEEECChHHHHHhhcCChHHHHHHHHHHcCCcCCHHHHHHHHHHHHHhhcc
Confidence            35688999999999999999999999999999999999999999999999999999999999999999999999987  4


Q ss_pred             CCCCcceEEEeCCCCCHHHHHhc
Q 030464          154 YYRGEIGFILDGLPRSRIQATIS  176 (177)
Q Consensus       154 ~~~~~~G~ILDGfPrt~~QAe~L  176 (177)
                      .  ...||||||||||..||+.|
T Consensus        84 ~--~~~g~iLDGfPRt~~Qa~~l  104 (229)
T PTZ00088         84 D--CFKGFILDGFPRNLKQCKEL  104 (229)
T ss_pred             c--cCceEEEecCCCCHHHHHHH
Confidence            3  36899999999999999875

>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]

Probab=99.92  E-value=1.1e-24  Score=175.52  Aligned_cols=96  Identities=33%  Similarity=0.629  Sum_probs=91.7

Q ss_pred             eEEEEEcCCCCCchHHHHHHHHHhCCCeeeCchhhhhccCCCCchHHHHHHHHHcCCcchHHHHHHHHHHHHHccCCCCc
Q 030464           79 VHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGLLSKRLEDGYYRGE  158 (177)
Q Consensus        79 ~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~dLlr~el~~~s~lgk~i~~~l~~G~~Ipdeli~~Ll~~~L~~~~~~~~  158 (177)
                      ++|+|+|+|||||||+|++|+++++++|+|.++++|..+...+++++.++.+|++|+.||++++..++++++.+.+|.  
T Consensus         1 ~riiilG~pGaGK~T~A~~La~~~~i~hlstgd~~r~~~~~~t~lg~~~k~~i~~g~lv~d~i~~~~v~~rl~~~d~~--   78 (178)
T COG0563           1 MRILILGPPGAGKSTLAKKLAKKLGLPHLDTGDILRAAIAERTELGEEIKKYIDKGELVPDEIVNGLVKERLDEADCK--   78 (178)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHhCCcEEcHhHHhHhhhccCChHHHHHHHHHHcCCccchHHHHHHHHHHHHhhccc--
Confidence            579999999999999999999999999999999999999999999999999999999999999999999999998863  


Q ss_pred             ceEEEeCCCCCHHHHHhc
Q 030464          159 IGFILDGLPRSRIQATIS  176 (177)
Q Consensus       159 ~G~ILDGfPrt~~QAe~L  176 (177)
                      .|||+|||||+..||+.|
T Consensus        79 ~~~I~dg~PR~~~qa~~l   96 (178)
T COG0563          79 AGFILDGFPRTLCQARAL   96 (178)
T ss_pred             CeEEEeCCCCcHHHHHHH
Confidence            399999999999999875

>PRK13808 adenylate kinase; Provisional

Probab=99.91  E-value=1.3e-24  Score=189.95  Aligned_cols=96  Identities=25%  Similarity=0.465  Sum_probs=91.6

Q ss_pred             eEEEEEcCCCCCchHHHHHHHHHhCCCeeeCchhhhhccCCCCchHHHHHHHHHcCCcchHHHHHHHHHHHHHccCCCCc
Q 030464           79 VHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGLLSKRLEDGYYRGE  158 (177)
Q Consensus        79 ~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~dLlr~el~~~s~lgk~i~~~l~~G~~Ipdeli~~Ll~~~L~~~~~~~~  158 (177)
                      ++|+|+|||||||||+|+.|++.||++||+++||||.++...++++..+.++|.+|.++||+++.+++.++|.+.++  .
T Consensus         1 mrIiv~GpPGSGK~T~a~~LA~~ygl~~is~gdlLR~~i~~~s~~g~~~~~~~~~G~lVPdeiv~~li~e~l~~~~~--~   78 (333)
T PRK13808          1 MRLILLGPPGAGKGTQAQRLVQQYGIVQLSTGDMLRAAVAAGTPVGLKAKDIMASGGLVPDEVVVGIISDRIEQPDA--A   78 (333)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHhCCceecccHHHHHHhhcCChhhHHHHHHHHcCCCCCHHHHHHHHHHHHhcccc--c
Confidence            57999999999999999999999999999999999999999999999999999999999999999999999998874  6


Q ss_pred             ceEEEeCCCCCHHHHHhc
Q 030464          159 IGFILDGLPRSRIQATIS  176 (177)
Q Consensus       159 ~G~ILDGfPrt~~QAe~L  176 (177)
                      .||||||||||.+||+.|
T Consensus        79 ~G~ILDGFPRt~~QA~~L   96 (333)
T PRK13808         79 NGFILDGFPRTVPQAEAL   96 (333)
T ss_pred             CCEEEeCCCCCHHHHHHH
Confidence            899999999999999865

>TIGR01351 adk adenylate kinases

Probab=99.91  E-value=2.6e-24  Score=175.19  Aligned_cols=96  Identities=29%  Similarity=0.521  Sum_probs=90.0

Q ss_pred             EEEEEcCCCCCchHHHHHHHHHhCCCeeeCchhhhhccCCCCchHHHHHHHHHcCCcchHHHHHHHHHHHHHccCCCCcc
Q 030464           80 HWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGLLSKRLEDGYYRGEI  159 (177)
Q Consensus        80 ~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~dLlr~el~~~s~lgk~i~~~l~~G~~Ipdeli~~Ll~~~L~~~~~~~~~  159 (177)
                      +|+|+|+|||||||+|+.||+++|++||++++++|+++...+++++.++.++.+|..+|++++.+++.++|.+..+ ...
T Consensus         1 rI~i~G~pGsGKsT~a~~La~~~g~~~is~gdllr~~~~~~~~~~~~~~~~~~~g~~vp~~~~~~l~~~~i~~~~~-~~~   79 (210)
T TIGR01351         1 RLVLLGPPGSGKGTQAKRIAEKYGLPHISTGDLLRAEIKAGTPLGKKAKEYMEKGELVPDEIVNQLVKERLTQNQD-NEN   79 (210)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHcCCCeeehhHHHHHhhccccHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCcc-cCC
Confidence            5899999999999999999999999999999999999999999999999999999999999999999999988543 367


Q ss_pred             eEEEeCCCCCHHHHHhc
Q 030464          160 GFILDGLPRSRIQATIS  176 (177)
Q Consensus       160 G~ILDGfPrt~~QAe~L  176 (177)
                      ||||||||||..||+.|
T Consensus        80 ~~ilDGfPrt~~Qa~~l   96 (210)
T TIGR01351        80 GFILDGFPRTLSQAEAL   96 (210)
T ss_pred             cEEEeCCCCCHHHHHHH
Confidence            99999999999999876

Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.

>PRK14526 adenylate kinase; Provisional

Probab=99.91  E-value=4.6e-24  Score=175.78  Aligned_cols=96  Identities=28%  Similarity=0.463  Sum_probs=90.9

Q ss_pred             eEEEEEcCCCCCchHHHHHHHHHhCCCeeeCchhhhhccCCCCchHHHHHHHHHcCCcchHHHHHHHHHHHHHccCCCCc
Q 030464           79 VHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGLLSKRLEDGYYRGE  158 (177)
Q Consensus        79 ~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~dLlr~el~~~s~lgk~i~~~l~~G~~Ipdeli~~Ll~~~L~~~~~~~~  158 (177)
                      ++|+|+|+|||||||+|+.|++.++++|+++|+++|+++...+++++.+++++++|..+|++++.+++.++|....+  .
T Consensus         1 m~i~l~G~pGsGKsT~a~~La~~~~~~~is~G~llr~~~~~~t~~g~~i~~~~~~g~lvpd~~~~~lv~~~l~~~~~--~   78 (211)
T PRK14526          1 MKLVFLGPPGSGKGTIAKILSNELNYYHISTGDLFRENILNSTPLGKEIKQIVENGQLVPDSITIKIVEDKINTIKN--N   78 (211)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHhCCceeecChHHHHhcccCChhhHHHHHHHHcCccCChHHHHHHHHHHHhcccc--c
Confidence            47999999999999999999999999999999999999999999999999999999999999999999999998763  6


Q ss_pred             ceEEEeCCCCCHHHHHhc
Q 030464          159 IGFILDGLPRSRIQATIS  176 (177)
Q Consensus       159 ~G~ILDGfPrt~~QAe~L  176 (177)
                      .||||||||||..||+.|
T Consensus        79 ~g~ilDGfPR~~~Qa~~l   96 (211)
T PRK14526         79 DNFILDGFPRNINQAKAL   96 (211)
T ss_pred             CcEEEECCCCCHHHHHHH
Confidence            899999999999999876

>PRK14532 adenylate kinase; Provisional

Probab=99.91  E-value=5.1e-24  Score=169.76  Aligned_cols=96  Identities=28%  Similarity=0.472  Sum_probs=90.0

Q ss_pred             eEEEEEcCCCCCchHHHHHHHHHhCCCeeeCchhhhhccCCCCchHHHHHHHHHcCCcchHHHHHHHHHHHHHccCCCCc
Q 030464           79 VHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGLLSKRLEDGYYRGE  158 (177)
Q Consensus        79 ~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~dLlr~el~~~s~lgk~i~~~l~~G~~Ipdeli~~Ll~~~L~~~~~~~~  158 (177)
                      ++|+|+|+|||||||+|++||+++|++||++++++|+++...+++++.+++++..|+.+|++++.+++.+++....+  .
T Consensus         1 ~~i~~~G~pGsGKsT~a~~la~~~g~~~is~~d~lr~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~--~   78 (188)
T PRK14532          1 MNLILFGPPAAGKGTQAKRLVEERGMVQLSTGDMLRAAIASGSELGQRVKGIMDRGELVSDEIVIALIEERLPEAEA--A   78 (188)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHcCCeEEeCcHHHHHHHHcCCHHHHHHHHHHHCCCccCHHHHHHHHHHHHhCcCc--c
Confidence            47999999999999999999999999999999999999988899999999999999999999999999999987763  6


Q ss_pred             ceEEEeCCCCCHHHHHhc
Q 030464          159 IGFILDGLPRSRIQATIS  176 (177)
Q Consensus       159 ~G~ILDGfPrt~~QAe~L  176 (177)
                      .||||||||||..|++.+
T Consensus        79 ~g~vldg~pr~~~q~~~~   96 (188)
T PRK14532         79 GGAIFDGFPRTVAQAEAL   96 (188)
T ss_pred             CcEEEeCCCCCHHHHHHH
Confidence            899999999999999864

>PRK14531 adenylate kinase; Provisional

Probab=99.91  E-value=6.7e-24  Score=169.66  Aligned_cols=96  Identities=27%  Similarity=0.466  Sum_probs=89.2

Q ss_pred             CeEEEEEcCCCCCchHHHHHHHHHhCCCeeeCchhhhhccCCCCchHHHHHHHHHcCCcchHHHHHHHHHHHHHccCCCC
Q 030464           78 GVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGLLSKRLEDGYYRG  157 (177)
Q Consensus        78 ~~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~dLlr~el~~~s~lgk~i~~~l~~G~~Ipdeli~~Ll~~~L~~~~~~~  157 (177)
                      +.+|+|+|+|||||||+|+.||+++|++||++++++|+++...+++++.++.++.+|..+|++++..++.+++.+..   
T Consensus         2 ~~~i~i~G~pGsGKsT~~~~la~~~g~~~is~gd~lr~~~~~~~~~~~~~~~~~~~G~~v~d~l~~~~~~~~l~~~~---   78 (183)
T PRK14531          2 KQRLLFLGPPGAGKGTQAARLCAAHGLRHLSTGDLLRSEVAAGSALGQEAEAVMNRGELVSDALVLAIVESQLKALN---   78 (183)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHhCCCeEecccHHHHHHhcCCHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhhcc---
Confidence            35799999999999999999999999999999999999999999999999999999999999999999999997753   


Q ss_pred             cceEEEeCCCCCHHHHHhc
Q 030464          158 EIGFILDGLPRSRIQATIS  176 (177)
Q Consensus       158 ~~G~ILDGfPrt~~QAe~L  176 (177)
                      ..||||||||||..|++.+
T Consensus        79 ~~g~ilDGfpr~~~q~~~~   97 (183)
T PRK14531         79 SGGWLLDGFPRTVAQAEAL   97 (183)
T ss_pred             CCcEEEeCCCCCHHHHHHH
Confidence            5799999999999999864

>PRK00279 adk adenylate kinase; Reviewed

Probab=99.90  E-value=1.7e-23  Score=171.03  Aligned_cols=96  Identities=29%  Similarity=0.542  Sum_probs=90.6

Q ss_pred             eEEEEEcCCCCCchHHHHHHHHHhCCCeeeCchhhhhccCCCCchHHHHHHHHHcCCcchHHHHHHHHHHHHHccCCCCc
Q 030464           79 VHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGLLSKRLEDGYYRGE  158 (177)
Q Consensus        79 ~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~dLlr~el~~~s~lgk~i~~~l~~G~~Ipdeli~~Ll~~~L~~~~~~~~  158 (177)
                      ++|+|+|+|||||||+|+.||+.+|++|+++++++++++...++.++.+++++.+|..+|++++.+++.++|.+.++  .
T Consensus         1 ~~I~v~G~pGsGKsT~a~~la~~~~~~~is~~dl~r~~~~~~~~~~~~~~~~~~~g~~~p~~~~~~~i~~~l~~~~~--~   78 (215)
T PRK00279          1 MRLILLGPPGAGKGTQAKFIAEKYGIPHISTGDMLRAAVKAGTELGKEAKSYMDAGELVPDEIVIGLVKERLAQPDC--K   78 (215)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHhCCcEEECCccHHHHHhccchHHHHHHHHHHcCCcCCHHHHHHHHHHHHhccCc--c
Confidence            47999999999999999999999999999999999999999999999999999999999999999999999988764  4


Q ss_pred             ceEEEeCCCCCHHHHHhc
Q 030464          159 IGFILDGLPRSRIQATIS  176 (177)
Q Consensus       159 ~G~ILDGfPrt~~QAe~L  176 (177)
                      .||||||||++..||+.|
T Consensus        79 ~g~VlDGfPr~~~qa~~l   96 (215)
T PRK00279         79 NGFLLDGFPRTIPQAEAL   96 (215)
T ss_pred             CCEEEecCCCCHHHHHHH
Confidence            599999999999999876

>PRK14528 adenylate kinase; Provisional

Probab=99.90  E-value=3e-23  Score=166.90  Aligned_cols=96  Identities=27%  Similarity=0.559  Sum_probs=90.9

Q ss_pred             eEEEEEcCCCCCchHHHHHHHHHhCCCeeeCchhhhhccCCCCchHHHHHHHHHcCCcchHHHHHHHHHHHHHccCCCCc
Q 030464           79 VHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGLLSKRLEDGYYRGE  158 (177)
Q Consensus        79 ~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~dLlr~el~~~s~lgk~i~~~l~~G~~Ipdeli~~Ll~~~L~~~~~~~~  158 (177)
                      ++|+|+|+|||||||+|+.|++.+|++|+++++++++++..+++++..++.++..|..+|++++..++.+++.+..+  .
T Consensus         2 ~~i~i~G~pGsGKtt~a~~la~~~~~~~is~~~~lr~~~~~~~~~g~~~~~~~~~g~lvp~~~~~~~~~~~l~~~~~--~   79 (186)
T PRK14528          2 KNIIFMGPPGAGKGTQAKILCERLSIPQISTGDILREAVKNQTAMGIEAKRYMDAGDLVPDSVVIGIIKDRIREADC--K   79 (186)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHhCCCeeeCCHHHHHHhhcCCHHHHHHHHHHhCCCccCHHHHHHHHHHHHhCcCc--c
Confidence            57999999999999999999999999999999999999999999999999999999999999999999999998764  5


Q ss_pred             ceEEEeCCCCCHHHHHhc
Q 030464          159 IGFILDGLPRSRIQATIS  176 (177)
Q Consensus       159 ~G~ILDGfPrt~~QAe~L  176 (177)
                      .||||||||||.+||+.|
T Consensus        80 ~g~viDG~Pr~~~qa~~l   97 (186)
T PRK14528         80 NGFLLDGFPRTVEQADAL   97 (186)
T ss_pred             CcEEEeCCCCCHHHHHHH
Confidence            799999999999999875

>PRK02496 adk adenylate kinase; Provisional

Probab=99.89  E-value=4.3e-23  Score=164.16  Aligned_cols=97  Identities=31%  Similarity=0.536  Sum_probs=90.8

Q ss_pred             CeEEEEEcCCCCCchHHHHHHHHHhCCCeeeCchhhhhccCCCCchHHHHHHHHHcCCcchHHHHHHHHHHHHHccCCCC
Q 030464           78 GVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGLLSKRLEDGYYRG  157 (177)
Q Consensus        78 ~~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~dLlr~el~~~s~lgk~i~~~l~~G~~Ipdeli~~Ll~~~L~~~~~~~  157 (177)
                      +++|+|+|+|||||||+|+.|++.+|++|+++++++++++..+++++..++..+.+|..+|++++.+++.+++.+.++  
T Consensus         1 ~~~i~i~G~pGsGKst~a~~la~~~~~~~i~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~~l~~~l~~~~~--   78 (184)
T PRK02496          1 MTRLIFLGPPGAGKGTQAVVLAEHLHIPHISTGDILRQAIKEQTPLGIKAQGYMDKGELVPDQLVLDLVQERLQQPDA--   78 (184)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHhCCcEEEhHHHHHHHHhccChhHHHHHHHHHCCCccCHHHHHHHHHHHHhCcCc--
Confidence            468999999999999999999999999999999999999988999999999999999999999999999999988764  


Q ss_pred             cceEEEeCCCCCHHHHHhc
Q 030464          158 EIGFILDGLPRSRIQATIS  176 (177)
Q Consensus       158 ~~G~ILDGfPrt~~QAe~L  176 (177)
                      ..||||||||+|..|++.|
T Consensus        79 ~~g~vldGfPr~~~q~~~l   97 (184)
T PRK02496         79 ANGWILDGFPRKVTQAAFL   97 (184)
T ss_pred             cCCEEEeCCCCCHHHHHHH
Confidence            5799999999999998764

>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family

Probab=99.89  E-value=9.4e-23  Score=161.17  Aligned_cols=94  Identities=17%  Similarity=0.331  Sum_probs=87.0

Q ss_pred             EEEEEcCCCCCchHHHHHHHHHhCCCeeeCchhhhhccCCCCchHHHHHHHHHcCCcchHHHHHHHHHHHHHccCCCCcc
Q 030464           80 HWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGLLSKRLEDGYYRGEI  159 (177)
Q Consensus        80 ~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~dLlr~el~~~s~lgk~i~~~l~~G~~Ipdeli~~Ll~~~L~~~~~~~~~  159 (177)
                      .|+|+|+|||||||+|+.||+++|++||++++++|+++...++.++.+++++.+|..+|++++.+++++++....   .+
T Consensus         1 ~i~i~G~pGsGKst~a~~la~~~~~~~is~~d~lr~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~---~~   77 (183)
T TIGR01359         1 VVFVLGGPGSGKGTQCAKIVENFGFTHLSAGDLLRAEIKSGSENGELIESMIKNGKIVPSEVTVKLLKNAIQADG---SK   77 (183)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHcCCeEEECChHHHHHHhcCChHHHHHHHHHHCCCcCCHHHHHHHHHHHHhccC---CC
Confidence            378999999999999999999999999999999999998888899999999999999999999999999888753   57


Q ss_pred             eEEEeCCCCCHHHHHhc
Q 030464          160 GFILDGLPRSRIQATIS  176 (177)
Q Consensus       160 G~ILDGfPrt~~QAe~L  176 (177)
                      ||||||||+|..|++.+
T Consensus        78 ~~vlDg~p~~~~q~~~~   94 (183)
T TIGR01359        78 KFLIDGFPRNEENLEAW   94 (183)
T ss_pred             cEEEeCCCCCHHHHHHH
Confidence            99999999999998753

This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.

>PLN02200 adenylate kinase family protein

Probab=99.88  E-value=1.7e-22  Score=168.60  Aligned_cols=106  Identities=19%  Similarity=0.377  Sum_probs=93.5

Q ss_pred             cCccCccc--CCCeEEEEEcCCCCCchHHHHHHHHHhCCCeeeCchhhhhccCCCCchHHHHHHHHHcCCcchHHHHHHH
Q 030464           68 PDTEGRER--RRGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGL  145 (177)
Q Consensus        68 ~~~~~~~~--~~~~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~dLlr~el~~~s~lgk~i~~~l~~G~~Ipdeli~~L  145 (177)
                      +++.+..+  ..+++|+|+|+|||||||+|+.|++++|++||++++++|+++...++.+..+.+.+..|+.+|++++.++
T Consensus        31 ~~~~~~~~~~~~~~ii~I~G~PGSGKsT~a~~La~~~g~~his~gdllR~~i~~~s~~~~~i~~~~~~G~~vp~e~~~~~  110 (234)
T PLN02200         31 LEERGSSSKEKTPFITFVLGGPGSGKGTQCEKIVETFGFKHLSAGDLLRREIASNSEHGAMILNTIKEGKIVPSEVTVKL  110 (234)
T ss_pred             cccccCCccCCCCEEEEEECCCCCCHHHHHHHHHHHhCCeEEEccHHHHHHHhccChhHHHHHHHHHcCCCCcHHHHHHH
Confidence            33344443  3457899999999999999999999999999999999999999889999999999999999999999999


Q ss_pred             HHHHHHccCCCCcceEEEeCCCCCHHHHHhc
Q 030464          146 LSKRLEDGYYRGEIGFILDGLPRSRIQATIS  176 (177)
Q Consensus       146 l~~~L~~~~~~~~~G~ILDGfPrt~~QAe~L  176 (177)
                      +.+++....   ..||||||||++..|++.+
T Consensus       111 l~~~l~~~~---~~~~ILDG~Prt~~q~~~l  138 (234)
T PLN02200        111 IQKEMESSD---NNKFLIDGFPRTEENRIAF  138 (234)
T ss_pred             HHHHHhcCC---CCeEEecCCcccHHHHHHH
Confidence            999998653   4799999999999999764

>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP)

Probab=99.86  E-value=1.2e-21  Score=155.51  Aligned_cols=95  Identities=32%  Similarity=0.541  Sum_probs=88.8

Q ss_pred             EEEEEcCCCCCchHHHHHHHHHhCCCeeeCchhhhhccCCCCchHHHHHHHHHcCCcchHHHHHHHHHHHHHccCCCCcc
Q 030464           80 HWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGLLSKRLEDGYYRGEI  159 (177)
Q Consensus        80 ~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~dLlr~el~~~s~lgk~i~~~l~~G~~Ipdeli~~Ll~~~L~~~~~~~~~  159 (177)
                      +|+|+|+|||||||+|+.||+.+|+.||++++++++++...+++++.+++++.+|..+|++++.+++..+|.+..  ...
T Consensus         1 ~I~i~G~pGsGKst~a~~La~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~l~~~~--~~~   78 (194)
T cd01428           1 RILLLGPPGSGKGTQAERLAKKYGLPHISTGDLLREEIASGTELGKKAKEYIDSGKLVPDEIVIKLLKERLKKPD--CKK   78 (194)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHcCCeEEECcHHHHHHHhcCChHHHHHHHHHHcCCccCHHHHHHHHHHHHhccc--ccC
Confidence            589999999999999999999999999999999999998888999999999999999999999999999998764  357


Q ss_pred             eEEEeCCCCCHHHHHhc
Q 030464          160 GFILDGLPRSRIQATIS  176 (177)
Q Consensus       160 G~ILDGfPrt~~QAe~L  176 (177)
                      ||||||||++..|++.|
T Consensus        79 ~~vldg~Pr~~~q~~~l   95 (194)
T cd01428          79 GFILDGFPRTVDQAEAL   95 (194)
T ss_pred             CEEEeCCCCCHHHHHHH
Confidence            99999999999999865

This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.

>PRK14527 adenylate kinase; Provisional

Probab=99.86  E-value=1.7e-21  Score=156.32  Aligned_cols=97  Identities=26%  Similarity=0.436  Sum_probs=90.2

Q ss_pred             CCeEEEEEcCCCCCchHHHHHHHHHhCCCeeeCchhhhhccCCCCchHHHHHHHHHcCCcchHHHHHHHHHHHHHccCCC
Q 030464           77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGLLSKRLEDGYYR  156 (177)
Q Consensus        77 ~~~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~dLlr~el~~~s~lgk~i~~~l~~G~~Ipdeli~~Ll~~~L~~~~~~  156 (177)
                      ++..|+|+|+|||||||+|+.|++++|+.|+++++++++++...++++..++..+.+|..+|++++.+++.+++.+.++ 
T Consensus         5 ~~~~i~i~G~pGsGKsT~a~~La~~~~~~~is~gd~~r~~~~~~~~~~~~~~~~~~~g~~~p~~~~~~l~~~~l~~~~~-   83 (191)
T PRK14527          5 KNKVVIFLGPPGAGKGTQAERLAQELGLKKLSTGDILRDHVARGTELGQRAKPIMEAGDLVPDELILALIRDELAGMEP-   83 (191)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHhCCCCCCccHHHHHHHhcCcHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCC-
Confidence            5678999999999999999999999999999999999999988899999999999999999999999999999988653 


Q ss_pred             CcceEEEeCCCCCHHHHHhc
Q 030464          157 GEIGFILDGLPRSRIQATIS  176 (177)
Q Consensus       157 ~~~G~ILDGfPrt~~QAe~L  176 (177)
                        .+|||||||++..|++.+
T Consensus        84 --~~~VlDGfpr~~~q~~~~  101 (191)
T PRK14527         84 --VRVIFDGFPRTLAQAEAL  101 (191)
T ss_pred             --CcEEEcCCCCCHHHHHHH
Confidence              589999999999998754

>KOG3078 consensus Adenylate kinase [Nucleotide transport and metabolism]

Probab=99.85  E-value=2.1e-21  Score=162.31  Aligned_cols=98  Identities=34%  Similarity=0.574  Sum_probs=93.5

Q ss_pred             CCeEEEEEcCCCCCchHHHHHHHHHhCCCeeeCchhhhhccCCCCchHHHHHHHHHcCCcchHHHHHHHHHHHHHccCCC
Q 030464           77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGLLSKRLEDGYYR  156 (177)
Q Consensus        77 ~~~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~dLlr~el~~~s~lgk~i~~~l~~G~~Ipdeli~~Ll~~~L~~~~~~  156 (177)
                      ++++++++|+||+||+|+|.+|++.|++.|++++|++|+++...+++++.++.++++|+.|||++++.++.++|+...  
T Consensus        14 ~~~~~v~~G~pg~gkgt~a~~l~~~~~~~hl~tGdllr~~ia~~telg~~~~~~~~~g~lvpDeiv~~~l~~~l~~~~--   91 (235)
T KOG3078|consen   14 KGVRAVLLGAPGSGKGTQAPRLTKNFGVIHISTGDLLRDEIASGTELGKEAKEAIDKGKLVPDEVVVRLLEKRLENPR--   91 (235)
T ss_pred             cceEEEEEeCCCCCCCccCHHHHHhcCCccchhHHHHHHHHhccCcHHHHHHHHHHhcCcCcHHHHHHHHHhhccccc--
Confidence            789999999999999999999999999999999999999999999999999999999999999999998888899885  


Q ss_pred             CcceEEEeCCCCCHHHHHhc
Q 030464          157 GEIGFILDGLPRSRIQATIS  176 (177)
Q Consensus       157 ~~~G~ILDGfPrt~~QAe~L  176 (177)
                      +..||||||||||.-||+.|
T Consensus        92 ~~~~~ildg~Prt~~qa~~l  111 (235)
T KOG3078|consen   92 CQKGFILDGFPRTVQQAEEL  111 (235)
T ss_pred             cccccccCCCCcchHHHHHH
Confidence            47999999999999999874

>PRK14530 adenylate kinase; Provisional

Probab=99.84  E-value=1.2e-20  Score=154.22  Aligned_cols=94  Identities=22%  Similarity=0.377  Sum_probs=81.5

Q ss_pred             CCeEEEEEcCCCCCchHHHHHHHHHhCCCeeeCchhhhhccC-----CCCchHHHHHHHHHcCCcchHHHHHHHHHHHHH
Q 030464           77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLS-----PRSSLHKQIANAVNRGEVVSEDIIFGLLSKRLE  151 (177)
Q Consensus        77 ~~~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~dLlr~el~-----~~s~lgk~i~~~l~~G~~Ipdeli~~Ll~~~L~  151 (177)
                      ..++|+|+|+|||||||+|+.||+.+|++||+++++++++..     .....+. .+..+..|..+|++++.+++.+.+.
T Consensus         2 ~~~~I~i~G~pGsGKsT~~~~La~~~~~~~i~~g~~lr~~~~~~~~~~~~~~~~-~~~~~~~g~~~~d~~~~~~l~~~l~   80 (215)
T PRK14530          2 SQPRILLLGAPGAGKGTQSSNLAEEFGVEHVTTGDALRANKQMDISDMDTEYDT-PGEYMDAGELVPDAVVNEIVEEALS   80 (215)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHhCCeEEeccHHHHHhccCCcccccchHHH-HHHHHHcCCCCCHHHHHHHHHHHHh
Confidence            345899999999999999999999999999999999999872     2344554 6778999999999999999998876


Q ss_pred             ccCCCCcceEEEeCCCCCHHHHHhc
Q 030464          152 DGYYRGEIGFILDGLPRSRIQATIS  176 (177)
Q Consensus       152 ~~~~~~~~G~ILDGfPrt~~QAe~L  176 (177)
                      +     ..||||||||++..|++.|
T Consensus        81 ~-----~~~~IldG~pr~~~q~~~l  100 (215)
T PRK14530         81 D-----ADGFVLDGYPRNLEQAEYL  100 (215)
T ss_pred             c-----CCCEEEcCCCCCHHHHHHH
Confidence            5     3599999999999999875

>PLN02842 nucleotide kinase

Probab=99.82  E-value=3.3e-20  Score=169.60  Aligned_cols=94  Identities=27%  Similarity=0.460  Sum_probs=88.5

Q ss_pred             EEEcCCCCCchHHHHHHHHHhCCCeeeCchhhhhccCCCCchHHHHHHHHHcCCcchHHHHHHHHHHHHHccCCCCcceE
Q 030464           82 AFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGLLSKRLEDGYYRGEIGF  161 (177)
Q Consensus        82 lIiGpPGSGKSTlA~~LAk~lgl~~Is~~dLlr~el~~~s~lgk~i~~~l~~G~~Ipdeli~~Ll~~~L~~~~~~~~~G~  161 (177)
                      +|+|+|||||||+|+.|++++++.|+++++++++++..++++|+.+++++.+|+.+|++++..++.+++++..+ ..+||
T Consensus         1 ~I~G~PGSGKSTqa~~Lak~lg~~hIs~gdLLR~ev~~~T~iG~~Ire~l~~G~lvPdeiv~~ll~drl~~~~~-~~~G~   79 (505)
T PLN02842          1 MISGAPASGKGTQCELIVHKFGLVHISTGDLLRAEVSAGTDIGKRAKEFMNSGRLVPDEIVIAMVTGRLSREDA-KEKGW   79 (505)
T ss_pred             CeeCCCCCCHHHHHHHHHHHhCCCEEEccHHHHHHhccCCHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhCccc-cCCcE
Confidence            47999999999999999999999999999999999999999999999999999999999999999999988764 36899


Q ss_pred             EEeCCCCCHHHHHhc
Q 030464          162 ILDGLPRSRIQATIS  176 (177)
Q Consensus       162 ILDGfPrt~~QAe~L  176 (177)
                      ||||||||..|++.|
T Consensus        80 ILDGfPRt~~Qa~~L   94 (505)
T PLN02842         80 LLDGYPRSFAQAQSL   94 (505)
T ss_pred             EEeCCCCcHHHHHHH
Confidence            999999999999865

>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily

Probab=99.81  E-value=2.4e-19  Score=141.39  Aligned_cols=98  Identities=21%  Similarity=0.339  Sum_probs=87.1

Q ss_pred             CeEEEEEcCCCCCchHHHHHHHHHhCCCeeeCchhhhhccCCCCchHHHHHHHHHcCCcchHHHHHHHHHHHHHccCCCC
Q 030464           78 GVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGLLSKRLEDGYYRG  157 (177)
Q Consensus        78 ~~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~dLlr~el~~~s~lgk~i~~~l~~G~~Ipdeli~~Ll~~~L~~~~~~~  157 (177)
                      .+.|+|+|+|||||||+|+.|++.+|+.|+++++++++++...++.++.++..+.+|..+|++.+.+.+.+++..... .
T Consensus         3 ~~ii~i~G~~GsGKsTl~~~l~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~   81 (188)
T TIGR01360         3 CKIIFIVGGPGSGKGTQCEKIVEKYGFTHLSTGDLLRAEVASGSERGKQLQAIMESGDLVPLDTVLDLLKDAMVAALG-T   81 (188)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHhCCcEEeHHHHHHHHHhcCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcccC-c
Confidence            457899999999999999999999999999999999998877778888999999999999999999999888876543 3


Q ss_pred             cceEEEeCCCCCHHHHHhc
Q 030464          158 EIGFILDGLPRSRIQATIS  176 (177)
Q Consensus       158 ~~G~ILDGfPrt~~QAe~L  176 (177)
                      ..|||+||||++..|++.+
T Consensus        82 ~~~~i~dg~~~~~~q~~~~  100 (188)
T TIGR01360        82 SKGFLIDGYPREVKQGEEF  100 (188)
T ss_pred             CCeEEEeCCCCCHHHHHHH
Confidence            6799999999999998754

Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.

>PRK08356 hypothetical protein; Provisional

Probab=99.45  E-value=2e-13  Score=110.04  Aligned_cols=92  Identities=22%  Similarity=0.243  Sum_probs=68.9

Q ss_pred             CeEEEEEcCCCCCchHHHHHHHHHhCCCeeeCchhhhhccCCC----C---chHHH----HHHHHHcCCcchH----HHH
Q 030464           78 GVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPR----S---SLHKQ----IANAVNRGEVVSE----DII  142 (177)
Q Consensus        78 ~~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~dLlr~el~~~----s---~lgk~----i~~~l~~G~~Ipd----eli  142 (177)
                      .+.|+|+|||||||||+|+.|+ ++|+++|++++.++......    .   ..+..    ...+++.|+.+++    +++
T Consensus         5 ~~~i~~~G~~gsGK~t~a~~l~-~~g~~~is~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~e~g~~~~~~yG~~~~   83 (195)
T PRK08356          5 KMIVGVVGKIAAGKTTVAKFFE-EKGFCRVSCSDPLIDLLTHNVSDYSWVPEVPFKGEPTRENLIELGRYLKEKYGEDIL   83 (195)
T ss_pred             cEEEEEECCCCCCHHHHHHHHH-HCCCcEEeCCCcccccccccccccccccHHHHhhccccccHHHHHHHHHHhcCcHHH
Confidence            4679999999999999999996 58999999999665543321    1   22222    2467778888885    777


Q ss_pred             HHHHHHHHHccCCCCcceEEEeCCCCCHHHHHhc
Q 030464          143 FGLLSKRLEDGYYRGEIGFILDGLPRSRIQATIS  176 (177)
Q Consensus       143 ~~Ll~~~L~~~~~~~~~G~ILDGfPrt~~QAe~L  176 (177)
                      .+++.+++..  +   ..|||||| |+..|++.|
T Consensus        84 ~~~~~~~~~~--~---~~ividG~-r~~~q~~~l  111 (195)
T PRK08356         84 IRLAVDKKRN--C---KNIAIDGV-RSRGEVEAI  111 (195)
T ss_pred             HHHHHHHhcc--C---CeEEEcCc-CCHHHHHHH
Confidence            7777777732  1   35999999 999998765

>PRK01184 hypothetical protein; Provisional

Probab=99.39  E-value=2e-12  Score=102.61  Aligned_cols=90  Identities=14%  Similarity=0.315  Sum_probs=63.1

Q ss_pred             CeEEEEEcCCCCCchHHHHHHHHHhCCCeeeCchhhhhccCC-CC-----chHHHHHHHHHcCCcchHHHHHHHHHHHHH
Q 030464           78 GVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSP-RS-----SLHKQIANAVNRGEVVSEDIIFGLLSKRLE  151 (177)
Q Consensus        78 ~~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~dLlr~el~~-~s-----~lgk~i~~~l~~G~~Ipdeli~~Ll~~~L~  151 (177)
                      ++.|+|+|+|||||||+++ +++++|+++++++|++|+++.. ..     .+++.+.....  +.. ++.+..++...+.
T Consensus         1 ~~~i~l~G~~GsGKsT~a~-~~~~~g~~~i~~~d~lr~~~~~~~~~~~~~~~g~~~~~~~~--~~~-~~~~~~~~~~~i~   76 (184)
T PRK01184          1 MKIIGVVGMPGSGKGEFSK-IAREMGIPVVVMGDVIREEVKKRGLEPTDENIGKVAIDLRK--ELG-MDAVAKRTVPKIR   76 (184)
T ss_pred             CcEEEEECCCCCCHHHHHH-HHHHcCCcEEEhhHHHHHHHHHcCCCCCcHHHHHHHHHHHH--HHC-hHHHHHHHHHHHH
Confidence            3578999999999999987 7899999999999999998632 11     24554444332  222 2344445455555


Q ss_pred             ccCCCCcceEEEeCCCCCHHHHHh
Q 030464          152 DGYYRGEIGFILDGLPRSRIQATI  175 (177)
Q Consensus       152 ~~~~~~~~G~ILDGfPrt~~QAe~  175 (177)
                      ..   +...+|+||+ ++..|.+.
T Consensus        77 ~~---~~~~vvidg~-r~~~e~~~   96 (184)
T PRK01184         77 EK---GDEVVVIDGV-RGDAEVEY   96 (184)
T ss_pred             hc---CCCcEEEeCC-CCHHHHHH
Confidence            42   3578999999 78877754

>PRK08118 topology modulation protein; Reviewed

Probab=99.35  E-value=2.2e-12  Score=102.43  Aligned_cols=70  Identities=19%  Similarity=0.260  Sum_probs=52.9

Q ss_pred             eEEEEEcCCCCCchHHHHHHHHHhCCCeeeCchhhhhccCCCCchHHHHHHHHHcCCcchHHHHHHHHHHHHHccCCCCc
Q 030464           79 VHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGLLSKRLEDGYYRGE  158 (177)
Q Consensus        79 ~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~dLlr~el~~~s~lgk~i~~~l~~G~~Ipdeli~~Ll~~~L~~~~~~~~  158 (177)
                      ++|+|+|+|||||||+|+.|++.+++++++++++++..                ....++++...+++++.+.+      
T Consensus         2 ~rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l~~~~----------------~w~~~~~~~~~~~~~~~~~~------   59 (167)
T PRK08118          2 KKIILIGSGGSGKSTLARQLGEKLNIPVHHLDALFWKP----------------NWEGVPKEEQITVQNELVKE------   59 (167)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHhCCCceecchhhccc----------------CCcCCCHHHHHHHHHHHhcC------
Confidence            58999999999999999999999999999999987641                12344555555555553332      


Q ss_pred             ceEEEeC-CCCCH
Q 030464          159 IGFILDG-LPRSR  170 (177)
Q Consensus       159 ~G~ILDG-fPrt~  170 (177)
                      .+||||| ++++.
T Consensus        60 ~~wVidG~~~~~~   72 (167)
T PRK08118         60 DEWIIDGNYGGTM   72 (167)
T ss_pred             CCEEEeCCcchHH
Confidence            4799999 55554

>PRK06217 hypothetical protein; Validated

Probab=99.25  E-value=1.5e-11  Score=98.10  Aligned_cols=76  Identities=13%  Similarity=0.207  Sum_probs=54.7

Q ss_pred             CeEEEEEcCCCCCchHHHHHHHHHhCCCeeeCchhhhhccCCCCchHHHHHHHHHcCCcchHHHHHHHHHHHHHccCCCC
Q 030464           78 GVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGLLSKRLEDGYYRG  157 (177)
Q Consensus        78 ~~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~dLlr~el~~~s~lgk~i~~~l~~G~~Ipdeli~~Ll~~~L~~~~~~~  157 (177)
                      +++|+|+|+|||||||+|++|++.+|++|++++++++..-  ..+.          +...+++....++.+.+..     
T Consensus         1 ~~~I~i~G~~GsGKSTla~~L~~~l~~~~~~~D~~~~~~~--~~~~----------~~~~~~~~~~~~~~~~~~~-----   63 (183)
T PRK06217          1 MMRIHITGASGSGTTTLGAALAERLDIPHLDTDDYFWLPT--DPPF----------TTKRPPEERLRLLLEDLRP-----   63 (183)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHcCCcEEEcCceeeccC--CCCc----------cccCCHHHHHHHHHHHHhc-----
Confidence            3689999999999999999999999999999999887531  1111          1123444445555554432     


Q ss_pred             cceEEEeCCCCCH
Q 030464          158 EIGFILDGLPRSR  170 (177)
Q Consensus       158 ~~G~ILDGfPrt~  170 (177)
                      ..+|||||+|...
T Consensus        64 ~~~~vi~G~~~~~   76 (183)
T PRK06217         64 REGWVLSGSALGW   76 (183)
T ss_pred             CCCEEEEccHHHH
Confidence            3589999998753

>PRK03839 putative kinase; Provisional

Probab=99.22  E-value=2.6e-11  Score=96.00  Aligned_cols=38  Identities=16%  Similarity=0.300  Sum_probs=35.3

Q ss_pred             eEEEEEcCCCCCchHHHHHHHHHhCCCeeeCchhhhhc
Q 030464           79 VHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQD  116 (177)
Q Consensus        79 ~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~dLlr~e  116 (177)
                      ++|+|+|+|||||||+|+.||++++++|+++++++++.
T Consensus         1 m~I~l~G~pGsGKsT~~~~La~~~~~~~id~d~~~~~~   38 (180)
T PRK03839          1 MIIAITGTPGVGKTTVSKLLAEKLGYEYVDLTEFALKK   38 (180)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHhCCcEEehhhhhhhc
Confidence            36999999999999999999999999999999998763

>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A

Probab=99.14  E-value=6.9e-11  Score=87.09  Aligned_cols=35  Identities=31%  Similarity=0.457  Sum_probs=32.4

Q ss_pred             EEEEEcCCCCCchHHHHHHHHHhCCCeeeCchhhh
Q 030464           80 HWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVR  114 (177)
Q Consensus        80 ~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~dLlr  114 (177)
                      +|+|.|+|||||||+|+.|++.+|+++++++++++
T Consensus         1 vI~I~G~~gsGKST~a~~La~~~~~~~i~~d~~~~   35 (121)
T PF13207_consen    1 VIIISGPPGSGKSTLAKELAERLGFPVISMDDLIR   35 (121)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHHTCEEEEEHHHHC
T ss_pred             CEEEECCCCCCHHHHHHHHHHHHCCeEEEecceEE
Confidence            58999999999999999999999999999999543

...

>PRK07261 topology modulation protein; Provisional

Probab=99.06  E-value=3.9e-10  Score=89.61  Aligned_cols=71  Identities=21%  Similarity=0.215  Sum_probs=49.7

Q ss_pred             eEEEEEcCCCCCchHHHHHHHHHhCCCeeeCchhhhhccCCCCchHHHHHHHHHcCCcchHHHHHHHHHHHHHccCCCCc
Q 030464           79 VHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGLLSKRLEDGYYRGE  158 (177)
Q Consensus        79 ~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~dLlr~el~~~s~lgk~i~~~l~~G~~Ipdeli~~Ll~~~L~~~~~~~~  158 (177)
                      ++|+|+|+|||||||+|+.|++.+++++++.+++.....                ....+.+-....+.+.+.+      
T Consensus         1 ~ri~i~G~~GsGKSTla~~l~~~~~~~~i~~D~~~~~~~----------------~~~~~~~~~~~~~~~~~~~------   58 (171)
T PRK07261          1 MKIAIIGYSGSGKSTLARKLSQHYNCPVLHLDTLHFQPN----------------WQERDDDDMIADISNFLLK------   58 (171)
T ss_pred             CEEEEEcCCCCCHHHHHHHHHHHhCCCeEecCCEEeccc----------------cccCCHHHHHHHHHHHHhC------
Confidence            479999999999999999999999999999987654210                1122333344444444433      


Q ss_pred             ceEEEeCCCCCHH
Q 030464          159 IGFILDGLPRSRI  171 (177)
Q Consensus       159 ~G~ILDGfPrt~~  171 (177)
                      ..|||||...+..
T Consensus        59 ~~wIidg~~~~~~   71 (171)
T PRK07261         59 HDWIIDGNYSWCL   71 (171)
T ss_pred             CCEEEcCcchhhh
Confidence            2499999877644

>PRK13949 shikimate kinase; Provisional

Probab=99.05  E-value=1.2e-09  Score=86.76  Aligned_cols=86  Identities=16%  Similarity=0.245  Sum_probs=60.4

Q ss_pred             eEEEEEcCCCCCchHHHHHHHHHhCCCeeeCchhhhhccCCCCchHHHHHHHHHcCCcchHHHHHHHHHHHHHccCCCCc
Q 030464           79 VHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGLLSKRLEDGYYRGE  158 (177)
Q Consensus        79 ~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~dLlr~el~~~s~lgk~i~~~l~~G~~Ipdeli~~Ll~~~L~~~~~~~~  158 (177)
                      .+|+|+|+|||||||+++.||+.++++++++++++++....  .+....+   ..|+....++..+++++ +..     .
T Consensus         2 ~~I~liG~~GsGKstl~~~La~~l~~~~id~D~~i~~~~~~--~~~~~~~---~~g~~~fr~~e~~~l~~-l~~-----~   70 (169)
T PRK13949          2 ARIFLVGYMGAGKTTLGKALARELGLSFIDLDFFIENRFHK--TVGDIFA---ERGEAVFRELERNMLHE-VAE-----F   70 (169)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHcCCCeecccHHHHHHHCc--cHHHHHH---HhCHHHHHHHHHHHHHH-HHh-----C
Confidence            47999999999999999999999999999999988765432  2222211   34666666677777666 432     2


Q ss_pred             ceEEE-e--CCCCCHHHHHh
Q 030464          159 IGFIL-D--GLPRSRIQATI  175 (177)
Q Consensus       159 ~G~IL-D--GfPrt~~QAe~  175 (177)
                      .++|| +  |+|.+..+.+.
T Consensus        71 ~~~vis~Ggg~~~~~~~~~~   90 (169)
T PRK13949         71 EDVVISTGGGAPCFFDNMEL   90 (169)
T ss_pred             CCEEEEcCCcccCCHHHHHH
Confidence            35666 3  57777655543

>PHA02530 pseT polynucleotide kinase; Provisional

Probab=99.04  E-value=4.8e-10  Score=95.11  Aligned_cols=91  Identities=11%  Similarity=0.028  Sum_probs=56.9

Q ss_pred             CeEEEEEcCCCCCchHHHHHHHHHh-CCCeeeCchhhhhccCCCCchHHHHHHHHHcCCcchHHHHHHHHHHHHHccCCC
Q 030464           78 GVHWAFIGSPRAKKHVYAEMLSKLL-EVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGLLSKRLEDGYYR  156 (177)
Q Consensus        78 ~~~IlIiGpPGSGKSTlA~~LAk~l-gl~~Is~~dLlr~el~~~s~lgk~i~~~l~~G~~Ipdeli~~Ll~~~L~~~~~~  156 (177)
                      +..|+|+|+|||||||+|+.|++.+ +..+++.++ ++..+......+..  .+..++...-.+++.+.+.+.+..    
T Consensus         2 ~~liil~G~pGSGKSTla~~L~~~~~~~~~l~~D~-~r~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~~----   74 (300)
T PHA02530          2 MKIILTVGVPGSGKSTWAREFAAKNPKAVNVNRDD-LRQSLFGHGEWGEY--KFTKEKEDLVTKAQEAAALAALKS----   74 (300)
T ss_pred             cEEEEEEcCCCCCHHHHHHHHHHHCCCCEEEeccH-HHHHhcCCCccccc--ccChHHHHHHHHHHHHHHHHHHHc----
Confidence            3578889999999999999999999 899999866 45444322211110  000001111123344444444443    


Q ss_pred             CcceEEEeCCCCCHHHHHhc
Q 030464          157 GEIGFILDGLPRSRIQATIS  176 (177)
Q Consensus       157 ~~~G~ILDGfPrt~~QAe~L  176 (177)
                       ..++|||+++.+..|.+.+
T Consensus        75 -g~~vIid~~~~~~~~~~~~   93 (300)
T PHA02530         75 -GKSVIISDTNLNPERRRKW   93 (300)
T ss_pred             -CCeEEEeCCCCCHHHHHHH
Confidence             3689999999998877643

>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]

Probab=98.92  E-value=3.7e-09  Score=84.70  Aligned_cols=40  Identities=23%  Similarity=0.256  Sum_probs=37.0

Q ss_pred             eEEEEEcCCCCCchHHHHHHHHHhCCCeeeCchhhhhccC
Q 030464           79 VHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLS  118 (177)
Q Consensus        79 ~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~dLlr~el~  118 (177)
                      ++|.|-|+|||||||+|+.||+.+|++|+|.|.+.|+..+
T Consensus         1 m~ItIsG~pGsG~TTva~~lAe~~gl~~vsaG~iFR~~A~   40 (179)
T COG1102           1 MVITISGLPGSGKTTVARELAEHLGLKLVSAGTIFREMAR   40 (179)
T ss_pred             CEEEeccCCCCChhHHHHHHHHHhCCceeeccHHHHHHHH
Confidence            5789999999999999999999999999999999998544

>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]

Probab=98.91  E-value=1.1e-09  Score=86.78  Aligned_cols=41  Identities=24%  Similarity=0.370  Sum_probs=38.4

Q ss_pred             CCCeEEEEEcCCCCCchHHHHHHHHHhCCCeeeCchhhhhc
Q 030464           76 RRGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQD  116 (177)
Q Consensus        76 ~~~~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~dLlr~e  116 (177)
                      ...++|+|+|-||+||||+|++||+.+|++||.+++++++.
T Consensus         5 r~~PNILvtGTPG~GKstl~~~lae~~~~~~i~isd~vkEn   45 (176)
T KOG3347|consen    5 RERPNILVTGTPGTGKSTLAERLAEKTGLEYIEISDLVKEN   45 (176)
T ss_pred             hcCCCEEEeCCCCCCchhHHHHHHHHhCCceEehhhHHhhh
Confidence            56789999999999999999999999999999999999863

>PRK12339 2-phosphoglycerate kinase; Provisional

Probab=98.90  E-value=1.4e-09  Score=88.83  Aligned_cols=43  Identities=14%  Similarity=0.166  Sum_probs=39.5

Q ss_pred             CCeEEEEEcCCCCCchHHHHHHHHHhCCCeeeCchhhhhccCC
Q 030464           77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSP  119 (177)
Q Consensus        77 ~~~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~dLlr~el~~  119 (177)
                      .+..|+|.|.||+||||+|+.|++.+|+.++..+|++|+.+..
T Consensus         2 ~~~~i~i~G~~G~GKst~a~~l~~~~~~~~~~~~D~~r~~~r~   44 (197)
T PRK12339          2 ESTIHFIGGIPGVGKTSISGYIARHRAIDIVLSGDYLREFLRP   44 (197)
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHhcCCeEEehhHHHHHHHHH
Confidence            5678999999999999999999999999999999999998764

>PRK04182 cytidylate kinase; Provisional

Probab=98.89  E-value=4.8e-09  Score=81.77  Aligned_cols=39  Identities=23%  Similarity=0.327  Sum_probs=35.9

Q ss_pred             eEEEEEcCCCCCchHHHHHHHHHhCCCeeeCchhhhhcc
Q 030464           79 VHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDL  117 (177)
Q Consensus        79 ~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~dLlr~el  117 (177)
                      ++|+|+|+|||||||+|+.||+.+|+++++++++++...
T Consensus         1 ~~I~i~G~~GsGKstia~~la~~lg~~~id~~~~~~~~~   39 (180)
T PRK04182          1 MIITISGPPGSGKTTVARLLAEKLGLKHVSAGEIFRELA   39 (180)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHcCCcEecHHHHHHHHH
Confidence            479999999999999999999999999999999888754

>TIGR02173 cyt_kin_arch cytidylate kinase, putative

Probab=98.85  E-value=1e-08  Score=79.43  Aligned_cols=39  Identities=26%  Similarity=0.326  Sum_probs=35.5

Q ss_pred             eEEEEEcCCCCCchHHHHHHHHHhCCCeeeCchhhhhcc
Q 030464           79 VHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDL  117 (177)
Q Consensus        79 ~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~dLlr~el  117 (177)
                      +.|+|.|+|||||||+|+.|++.+|+++++.+++++...
T Consensus         1 ~iI~i~G~~GSGKstia~~la~~lg~~~~~~~~~~~~~~   39 (171)
T TIGR02173         1 MIITISGPPGSGKTTVAKILAEKLSLKLISAGDIFRELA   39 (171)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHcCCceecHHHHHHHHH
Confidence            468999999999999999999999999999998887653

Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.

>PRK14730 coaE dephospho-CoA kinase; Provisional

Probab=98.84  E-value=4.8e-09  Score=85.27  Aligned_cols=53  Identities=19%  Similarity=0.271  Sum_probs=47.8

Q ss_pred             eEEEEEcCCCCCchHHHHHHHHHhCCCeeeCchhhhhccCCCCchHHHHHHHH
Q 030464           79 VHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAV  131 (177)
Q Consensus        79 ~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~dLlr~el~~~s~lgk~i~~~l  131 (177)
                      ++|.|+|++||||||+|+.|++.+|+++++.+++.++.+..+++.++.+.+.+
T Consensus         2 ~~i~itG~~gsGKst~~~~l~~~~g~~~i~~D~~~~~~~~~~~~~~~~l~~~f   54 (195)
T PRK14730          2 RRIGLTGGIASGKSTVGNYLAQQKGIPILDADIYAREALAPGSPILKAILQRY   54 (195)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHhhCCeEeeCcHHHHHHHhcCchHHHHHHHHh
Confidence            47999999999999999999999999999999999999888888877777665

>PRK08233 hypothetical protein; Provisional

Probab=98.82  E-value=1.2e-08  Score=79.90  Aligned_cols=88  Identities=13%  Similarity=0.162  Sum_probs=48.5

Q ss_pred             CCeEEEEEcCCCCCchHHHHHHHHHhCCCeeeCchhhhhccCCCCchHHHHHHHHHcCCcchHHHHHHHHHHHHHccCCC
Q 030464           77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGLLSKRLEDGYYR  156 (177)
Q Consensus        77 ~~~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~dLlr~el~~~s~lgk~i~~~l~~G~~Ipdeli~~Ll~~~L~~~~~~  156 (177)
                      +++.|+|.|+|||||||+|+.|++.++...+...|..+....     ...+...+..|... +......+.+.+......
T Consensus         2 ~~~iI~I~G~~GsGKtTla~~L~~~l~~~~~~~~d~~~~~~~-----~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~   75 (182)
T PRK08233          2 KTKIITIAAVSGGGKTTLTERLTHKLKNSKALYFDRYDFDNC-----PEDICKWIDKGANY-SEWVLTPLIKDIQELIAK   75 (182)
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhhCCCCceEEECCEEcccC-----chhhhhhhhccCCh-hhhhhHHHHHHHHHHHcC
Confidence            467889999999999999999999997443333344432211     11233334444433 333333444444332211


Q ss_pred             CcceEEEeCCCCCH
Q 030464          157 GEIGFILDGLPRSR  170 (177)
Q Consensus       157 ~~~G~ILDGfPrt~  170 (177)
                      ....+|+.++|...
T Consensus        76 ~~~~~vivd~~~~~   89 (182)
T PRK08233         76 SNVDYIIVDYPFAY   89 (182)
T ss_pred             CCceEEEEeeehhh
Confidence            12356665567643

>PRK13947 shikimate kinase; Provisional

Probab=98.82  E-value=1.4e-08  Score=79.23  Aligned_cols=38  Identities=13%  Similarity=0.094  Sum_probs=35.2

Q ss_pred             eEEEEEcCCCCCchHHHHHHHHHhCCCeeeCchhhhhc
Q 030464           79 VHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQD  116 (177)
Q Consensus        79 ~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~dLlr~e  116 (177)
                      ++|+|+|+|||||||+|+.||+.+|+++++.+.++++.
T Consensus         2 ~~I~l~G~~GsGKst~a~~La~~lg~~~id~d~~~~~~   39 (171)
T PRK13947          2 KNIVLIGFMGTGKTTVGKRVATTLSFGFIDTDKEIEKM   39 (171)
T ss_pred             CeEEEEcCCCCCHHHHHHHHHHHhCCCEEECchhhhhh
Confidence            47999999999999999999999999999999887765

>PRK04040 adenylate kinase; Provisional

Probab=98.82  E-value=1.1e-08  Score=82.79  Aligned_cols=40  Identities=10%  Similarity=0.053  Sum_probs=36.7

Q ss_pred             CeEEEEEcCCCCCchHHHHHHHHHh--CCCeeeCchhhhhcc
Q 030464           78 GVHWAFIGSPRAKKHVYAEMLSKLL--EVPRISMSSIVRQDL  117 (177)
Q Consensus        78 ~~~IlIiGpPGSGKSTlA~~LAk~l--gl~~Is~~dLlr~el  117 (177)
                      ++.|+|+|.|||||||+++.|++++  ++.+++.++++++..
T Consensus         2 ~~~i~v~G~pG~GKtt~~~~l~~~l~~~~~~~~~g~~~~~~a   43 (188)
T PRK04040          2 MKVVVVTGVPGVGKTTVLNKALEKLKEDYKIVNFGDVMLEVA   43 (188)
T ss_pred             CeEEEEEeCCCCCHHHHHHHHHHHhccCCeEEecchHHHHHH
Confidence            5689999999999999999999999  899999999987654

>PRK00131 aroK shikimate kinase; Reviewed

Probab=98.80  E-value=2.4e-08  Score=77.23  Aligned_cols=42  Identities=21%  Similarity=0.252  Sum_probs=37.7

Q ss_pred             CCCeEEEEEcCCCCCchHHHHHHHHHhCCCeeeCchhhhhcc
Q 030464           76 RRGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDL  117 (177)
Q Consensus        76 ~~~~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~dLlr~el  117 (177)
                      ..++.|+|+|+|||||||+|+.||+.+|+++++.+++++...
T Consensus         2 ~~~~~i~l~G~~GsGKstla~~La~~l~~~~~d~d~~~~~~~   43 (175)
T PRK00131          2 LKGPNIVLIGFMGAGKSTIGRLLAKRLGYDFIDTDHLIEARA   43 (175)
T ss_pred             CCCCeEEEEcCCCCCHHHHHHHHHHHhCCCEEEChHHHHHHc
Confidence            356789999999999999999999999999999998887643

>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor

Probab=98.79  E-value=4.8e-09  Score=79.12  Aligned_cols=33  Identities=27%  Similarity=0.352  Sum_probs=30.5

Q ss_pred             EEEEEcCCCCCchHHHHHHHHHhCCCeeeCchh
Q 030464           80 HWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSI  112 (177)
Q Consensus        80 ~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~dL  112 (177)
                      .|+|.|+|||||||+|+.|++++|+++++.+.+
T Consensus         1 ~I~i~G~~GsGKst~a~~la~~~~~~~~~~~~i   33 (147)
T cd02020           1 IIAIDGPAGSGKSTVAKLLAKKLGLPYLDTGGI   33 (147)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHhCCceeccccC
Confidence            378999999999999999999999999999844

>PRK00625 shikimate kinase; Provisional

Probab=98.76  E-value=7.9e-09  Score=82.82  Aligned_cols=39  Identities=18%  Similarity=0.406  Sum_probs=36.3

Q ss_pred             eEEEEEcCCCCCchHHHHHHHHHhCCCeeeCchhhhhcc
Q 030464           79 VHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDL  117 (177)
Q Consensus        79 ~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~dLlr~el  117 (177)
                      ++|+|+|.|||||||+++.||+.+|++++++++++++..
T Consensus         1 ~~I~LiG~pGsGKTT~~k~La~~l~~~~id~D~~I~~~~   39 (173)
T PRK00625          1 MQIFLCGLPTVGKTSFGKALAKFLSLPFFDTDDLIVSNY   39 (173)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHhCCCEEEhhHHHHHHh
Confidence            479999999999999999999999999999999998754

>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B

Probab=98.73  E-value=2.8e-08  Score=74.88  Aligned_cols=38  Identities=29%  Similarity=0.260  Sum_probs=33.3

Q ss_pred             EEEEEcCCCCCchHHHHHHHHHhCCCeeeCchhhhhcc
Q 030464           80 HWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDL  117 (177)
Q Consensus        80 ~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~dLlr~el  117 (177)
                      .|+|+|+|||||||+|+.|++.++..+|+.+++.....
T Consensus         1 lii~~G~pgsGKSt~a~~l~~~~~~~~i~~D~~~~~~~   38 (143)
T PF13671_consen    1 LIILCGPPGSGKSTLAKRLAKRLGAVVISQDEIRRRLA   38 (143)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHSTEEEEEHHHHHHHHC
T ss_pred             CEEEECCCCCCHHHHHHHHHHHCCCEEEeHHHHHHHHc
Confidence            37899999999999999999999999999977665443

...

>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]

Probab=98.71  E-value=2.2e-08  Score=80.64  Aligned_cols=41  Identities=22%  Similarity=0.291  Sum_probs=37.8

Q ss_pred             CeEEEEEcCCCCCchHHHHHHHHHhCCCeeeCchhhhhccC
Q 030464           78 GVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLS  118 (177)
Q Consensus        78 ~~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~dLlr~el~  118 (177)
                      .++|+++|++|+||||+.++||+.++++++++|.++.+...
T Consensus         2 ~~~IvLiG~mGaGKSTIGr~LAk~L~~~F~D~D~~Ie~~~g   42 (172)
T COG0703           2 NMNIVLIGFMGAGKSTIGRALAKALNLPFIDTDQEIEKRTG   42 (172)
T ss_pred             CccEEEEcCCCCCHhHHHHHHHHHcCCCcccchHHHHHHHC
Confidence            46799999999999999999999999999999999988644

>cd02022 DPCK Dephospho-coenzyme A kinase (DPCK, EC 2

Probab=98.70  E-value=1.9e-08  Score=80.16  Aligned_cols=51  Identities=22%  Similarity=0.315  Sum_probs=44.5

Q ss_pred             EEEEEcCCCCCchHHHHHHHHHhCCCeeeCchhhhhccCCCCchHHHHHHHH
Q 030464           80 HWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAV  131 (177)
Q Consensus        80 ~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~dLlr~el~~~s~lgk~i~~~l  131 (177)
                      .|.|+|+|||||||+++.|++ +|+++|++|++.++.+......++.+.+..
T Consensus         1 ii~itG~~gsGKst~~~~l~~-~g~~~i~~D~~~~~~~~~~~~~~~~i~~~f   51 (179)
T cd02022           1 IIGLTGGIGSGKSTVAKLLKE-LGIPVIDADKIAHEVYEPGGPALQAIVEAF   51 (179)
T ss_pred             CEEEECCCCCCHHHHHHHHHH-CCCCEEecCHHHHhhhhcccHHHHHHHHHc
Confidence            378999999999999999998 999999999999998887777666666654

7.1.24) catalyzes the phosphorylation of dephosphocoenzyme A (dCoA) to yield CoA, which is the final step in CoA biosynthesis.

>PRK00081 coaE dephospho-CoA kinase; Reviewed

Probab=98.66  E-value=2.4e-08  Score=80.74  Aligned_cols=53  Identities=19%  Similarity=0.283  Sum_probs=45.9

Q ss_pred             CeEEEEEcCCCCCchHHHHHHHHHhCCCeeeCchhhhhccCCCCchHHHHHHHH
Q 030464           78 GVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAV  131 (177)
Q Consensus        78 ~~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~dLlr~el~~~s~lgk~i~~~l  131 (177)
                      +.+|.|+|++||||||+++.|++ +|+++|+.|++.++.+...++..+.+.+..
T Consensus         2 ~~~i~ltG~~gsGKst~~~~l~~-~g~~~i~~D~~~~~~~~~~~~~~~~i~~~f   54 (194)
T PRK00081          2 MLIIGLTGGIGSGKSTVANLFAE-LGAPVIDADAIAHEVVEPGGPALQAIVEAF   54 (194)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH-cCCEEEEecHHHHHHhhccHHHHHHHHHHh
Confidence            35799999999999999999988 999999999999998887777666666554

>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants

Probab=98.65  E-value=8.7e-08  Score=72.98  Aligned_cols=39  Identities=23%  Similarity=0.391  Sum_probs=35.4

Q ss_pred             EEEEEcCCCCCchHHHHHHHHHhCCCeeeCchhhhhccC
Q 030464           80 HWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLS  118 (177)
Q Consensus        80 ~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~dLlr~el~  118 (177)
                      +|+|+|+|||||||+|+.|++.+|+++++.+++++....
T Consensus         1 ~i~l~G~~GsGKstla~~la~~l~~~~~~~d~~~~~~~~   39 (154)
T cd00464           1 NIVLIGMMGAGKTTVGRLLAKALGLPFVDLDELIEQRAG   39 (154)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHhCCCEEEchHHHHHHcC
Confidence            489999999999999999999999999999988876543

Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.

>PRK13946 shikimate kinase; Provisional

Probab=98.64  E-value=1.8e-07  Score=74.85  Aligned_cols=42  Identities=14%  Similarity=0.179  Sum_probs=37.1

Q ss_pred             CCCeEEEEEcCCCCCchHHHHHHHHHhCCCeeeCchhhhhcc
Q 030464           76 RRGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDL  117 (177)
Q Consensus        76 ~~~~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~dLlr~el  117 (177)
                      ..+..|+|+|+|||||||+++.||+.+|+++++.+.++.+..
T Consensus         8 ~~~~~I~l~G~~GsGKsti~~~LA~~Lg~~~id~D~~~~~~~   49 (184)
T PRK13946          8 LGKRTVVLVGLMGAGKSTVGRRLATMLGLPFLDADTEIERAA   49 (184)
T ss_pred             cCCCeEEEECCCCCCHHHHHHHHHHHcCCCeECcCHHHHHHh
Confidence            356689999999999999999999999999999988766553

>COG0237 CoaE Dephospho-CoA kinase [Coenzyme metabolism]

Probab=98.61  E-value=1.2e-07  Score=78.01  Aligned_cols=51  Identities=22%  Similarity=0.334  Sum_probs=43.0

Q ss_pred             CeEEEEEcCCCCCchHHHHHHHHHhCCCeeeCchhhhhccCCCCchHHHHHH
Q 030464           78 GVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIAN  129 (177)
Q Consensus        78 ~~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~dLlr~el~~~s~lgk~i~~  129 (177)
                      ++.|.|+|.|||||||+|+.+++ +|++++++|+++|+.+.++.+....+.+
T Consensus         2 ~~iIglTG~igsGKStva~~~~~-~G~~vidaD~v~r~~~~~~~~~~~~i~~   52 (201)
T COG0237           2 MLIIGLTGGIGSGKSTVAKILAE-LGFPVIDADDVAREVVEPGGEALQEIAE   52 (201)
T ss_pred             ceEEEEecCCCCCHHHHHHHHHH-cCCeEEEccHHHHHHHhccchHHHHHHH
Confidence            56789999999999999999888 9999999999999888776655444433

>COG0283 Cmk Cytidylate kinase [Nucleotide transport and metabolism]

Probab=98.57  E-value=2.8e-07  Score=76.70  Aligned_cols=79  Identities=19%  Similarity=0.262  Sum_probs=56.8

Q ss_pred             eEEEEEcCCCCCchHHHHHHHHHhCCCeeeCchhhhhccCCCCchHHHHHHHHHcCCcchH-HHHHHHHHHHHHccCCCC
Q 030464           79 VHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSE-DIIFGLLSKRLEDGYYRG  157 (177)
Q Consensus        79 ~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~dLlr~el~~~s~lgk~i~~~l~~G~~Ipd-eli~~Ll~~~L~~~~~~~  157 (177)
                      ++|.|-||.||||||+|+.||++||+.|++.|.++|..          ....++++-.+.+ +.+.+++.+ +.-. ...
T Consensus         5 ~~IAIDGPagsGKsTvak~lA~~Lg~~yldTGamYRa~----------a~~~l~~~~~~~d~~~~~~l~~~-~~i~-f~~   72 (222)
T COG0283           5 IIIAIDGPAGSGKSTVAKILAEKLGFHYLDTGAMYRAV----------ALAALKHGVDLDDEDALVALAKE-LDIS-FVN   72 (222)
T ss_pred             eEEEEeCCCccChHHHHHHHHHHhCCCeecccHHHHHH----------HHHHHHcCCCCccHHHHHHHHHh-CCce-ecc
Confidence            78999999999999999999999999999999999974          2334556655544 455555542 2211 111


Q ss_pred             cceEEEeCCCCC
Q 030464          158 EIGFILDGLPRS  169 (177)
Q Consensus       158 ~~G~ILDGfPrt  169 (177)
                      ...++|+|..-|
T Consensus        73 ~~~v~l~gedvs   84 (222)
T COG0283          73 DDRVFLNGEDVS   84 (222)
T ss_pred             cceEEECCchhh
Confidence            256888887654

>PRK13973 thymidylate kinase; Provisional

Probab=98.56  E-value=3.2e-07  Score=75.13  Aligned_cols=75  Identities=17%  Similarity=0.222  Sum_probs=48.3

Q ss_pred             CCeEEEEEcCCCCCchHHHHHHHHHh---CCCeeeC--------chhhhhccCCC--CchHHHHHHHHHcCCcchHHHHH
Q 030464           77 RGVHWAFIGSPRAKKHVYAEMLSKLL---EVPRISM--------SSIVRQDLSPR--SSLHKQIANAVNRGEVVSEDIIF  143 (177)
Q Consensus        77 ~~~~IlIiGpPGSGKSTlA~~LAk~l---gl~~Is~--------~dLlr~el~~~--s~lgk~i~~~l~~G~~Ipdeli~  143 (177)
                      +++-|+|-|++||||||+++.|++.+   |+.++.+        ++++|+.+...  ..++..+...+-.+  ...+.+.
T Consensus         2 ~g~~IviEG~dGsGKtTq~~~l~~~l~~~g~~~~~~~~p~~~~~g~~ir~~l~~~~~~~~~~~~~~ll~~a--~r~~~~~   79 (213)
T PRK13973          2 RGRFITFEGGEGAGKSTQIRLLAERLRAAGYDVLVTREPGGSPGAEAIRHVLLSGAAELYGPRMEALLFAA--ARDDHVE   79 (213)
T ss_pred             CceEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEECCCCCchHHHHHHHHcCCCccCCCHHHHHHHHHH--HHHHHHH
Confidence            46789999999999999999999999   8888877        66666655431  12222222222222  2334555


Q ss_pred             HHHHHHHHcc
Q 030464          144 GLLSKRLEDG  153 (177)
Q Consensus       144 ~Ll~~~L~~~  153 (177)
                      +++...|.+.
T Consensus        80 ~~i~~~l~~g   89 (213)
T PRK13973         80 EVIRPALARG   89 (213)
T ss_pred             HHHHHHHHCC
Confidence            5566666554

>PRK14734 coaE dephospho-CoA kinase; Provisional

Probab=98.55  E-value=1.2e-07  Score=77.40  Aligned_cols=54  Identities=17%  Similarity=0.239  Sum_probs=46.3

Q ss_pred             eEEEEEcCCCCCchHHHHHHHHHhCCCeeeCchhhhhccCCCCchHHHHHHHHHc
Q 030464           79 VHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNR  133 (177)
Q Consensus        79 ~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~dLlr~el~~~s~lgk~i~~~l~~  133 (177)
                      +.|.|+|++||||||+++.|++ +|+++|+.+++.++.+..++...+.+.+.+..
T Consensus         2 ~~igitG~igsGKst~~~~l~~-~g~~vid~D~i~~~~~~~~~~~~~~l~~~fg~   55 (200)
T PRK14734          2 LRIGLTGGIGSGKSTVADLLSS-EGFLIVDADQVARDIVEPGQPALAELAEAFGD   55 (200)
T ss_pred             eEEEEECCCCCCHHHHHHHHHH-CCCeEEeCcHHHHHHHhcCCHHHHHHHHHhCc
Confidence            4789999999999999999987 89999999999999888877776666666533

>TIGR00152 dephospho-CoA kinase

Probab=98.53  E-value=1.3e-07  Score=75.51  Aligned_cols=51  Identities=20%  Similarity=0.215  Sum_probs=43.5

Q ss_pred             EEEEEcCCCCCchHHHHHHHHHhCCCeeeCchhhhhccCCCCchHHHHHHH
Q 030464           80 HWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANA  130 (177)
Q Consensus        80 ~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~dLlr~el~~~s~lgk~i~~~  130 (177)
                      +|+|+|.+||||||+++.|++..|+++|+.+++.++.+....+....+.+.
T Consensus         1 ~i~itG~~gsGKst~~~~l~~~~~~~~i~~D~~~~~~~~~~~~~~~~i~~~   51 (188)
T TIGR00152         1 IIGLTGGIGSGKSTVANYLADKYHFPVIDADKIAHQVVEKGSPAYEKIVDH   51 (188)
T ss_pred             CEEEECCCCCCHHHHHHHHHHhcCCeEEeCCHHHHHHHhcCChHHHHHHHH
Confidence            488999999999999999999888999999999999888777665555443

This model produces scores in the range of 0-25 bits against adenylate, guanylate, uridine, and thymidylate kinases.

>PRK13948 shikimate kinase; Provisional

Probab=98.53  E-value=4.3e-07  Score=73.42  Aligned_cols=42  Identities=19%  Similarity=0.055  Sum_probs=37.4

Q ss_pred             CCCeEEEEEcCCCCCchHHHHHHHHHhCCCeeeCchhhhhcc
Q 030464           76 RRGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDL  117 (177)
Q Consensus        76 ~~~~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~dLlr~el  117 (177)
                      ..+-.|+++|.+||||||+++.||+.+|.++|+++.++++..
T Consensus         8 ~~~~~I~LiG~~GsGKSTvg~~La~~lg~~~iD~D~~ie~~~   49 (182)
T PRK13948          8 RPVTWVALAGFMGTGKSRIGWELSRALMLHFIDTDRYIERVT   49 (182)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHHHcCCCEEECCHHHHHHH
Confidence            355789999999999999999999999999999998887653

>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate

Probab=98.49  E-value=6.5e-07  Score=68.43  Aligned_cols=34  Identities=18%  Similarity=0.222  Sum_probs=31.2

Q ss_pred             EEEEcCCCCCchHHHHHHHHHhCCCeeeCchhhh
Q 030464           81 WAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVR  114 (177)
Q Consensus        81 IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~dLlr  114 (177)
                      |+|+|+|||||||+|+.|++.++..+++.+++..
T Consensus         2 i~l~G~~GsGKST~a~~l~~~~~~~~i~~D~~~~   35 (150)
T cd02021           2 IVVMGVSGSGKSTVGKALAERLGAPFIDGDDLHP   35 (150)
T ss_pred             EEEEcCCCCCHHHHHHHHHhhcCCEEEeCccccc
Confidence            7899999999999999999999999999877654

The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.

>PRK13974 thymidylate kinase; Provisional

Probab=98.48  E-value=4.1e-07  Score=74.45  Aligned_cols=70  Identities=16%  Similarity=0.118  Sum_probs=45.1

Q ss_pred             CCeEEEEEcCCCCCchHHHHHHHHHhCCCeeeC--chhhhhccCCCCchHHHHHHHHH--cCCcchHHHHHHHH
Q 030464           77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISM--SSIVRQDLSPRSSLHKQIANAVN--RGEVVSEDIIFGLL  146 (177)
Q Consensus        77 ~~~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~--~dLlr~el~~~s~lgk~i~~~l~--~G~~Ipdeli~~Ll  146 (177)
                      .+..|+|.|++||||||+++.|++.+.....-.  .+.+.......+++|+.+++++.  .|...++.....++
T Consensus         2 ~g~~i~~eG~dGsGKsT~~~~l~~~l~~~g~~~~~~~~~~~~~p~~~~~g~~ir~~l~~~~~~~~~~~~~~~ll   75 (212)
T PRK13974          2 KGKFIVLEGIDGCGKTTQIDHLSKWLPSSGLMPKGAKLIITREPGGTLLGKSLRELLLDTSKDNSPSPLAELLL   75 (212)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHHHhcCccccCCeeeeeeCCCCCchHHHHHHHHcCCCcccCCCHHHHHHH
Confidence            467899999999999999999999874221100  01111112346789999999986  33445565544333

>TIGR00017 cmk cytidylate kinase

Probab=98.47  E-value=5.9e-07  Score=74.36  Aligned_cols=53  Identities=15%  Similarity=0.138  Sum_probs=42.8

Q ss_pred             CeEEEEEcCCCCCchHHHHHHHHHhCCCeeeCchhhhhccCCCCchHHHHHHHHHcCCcchHH
Q 030464           78 GVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSED  140 (177)
Q Consensus        78 ~~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~dLlr~el~~~s~lgk~i~~~l~~G~~Ipde  140 (177)
                      .+.|.|+||+||||||+++.|++++++.+++.|+++|..          ...++.+|..++++
T Consensus         2 ~~~i~i~G~~GsGKst~~~~la~~~~~~~~~~g~~~r~~----------~~~~l~~~~~~~~~   54 (217)
T TIGR00017         2 AMIIAIDGPSGAGKSTVAKAVAEKLGYAYLDSGAMYRAI----------ALAALQNRVDLTSE   54 (217)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHHhCCceeeCchHHHHH----------HHHHHHcCCCCCCH
Confidence            367999999999999999999999999999999998863          23445566555543

This family consists of cytidylate kinase, which catalyzes the phosphorylation of cytidine 5-monophosphate (dCMP) to cytidine 5 -diphosphate (dCDP) in the presence of ATP or GTP. UMP and dCMP can also act as acceptors.

>PRK06762 hypothetical protein; Provisional

Probab=98.46  E-value=6.5e-07  Score=69.67  Aligned_cols=38  Identities=24%  Similarity=0.254  Sum_probs=30.8

Q ss_pred             CeEEEEEcCCCCCchHHHHHHHHHh--CCCeeeCchhhhhc
Q 030464           78 GVHWAFIGSPRAKKHVYAEMLSKLL--EVPRISMSSIVRQD  116 (177)
Q Consensus        78 ~~~IlIiGpPGSGKSTlA~~LAk~l--gl~~Is~~dLlr~e  116 (177)
                      +..|+|.|+|||||||+|+.|++.+  ++.+++. |.++..
T Consensus         2 ~~li~i~G~~GsGKST~A~~L~~~l~~~~~~i~~-D~~r~~   41 (166)
T PRK06762          2 TTLIIIRGNSGSGKTTIAKQLQERLGRGTLLVSQ-DVVRRD   41 (166)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHhCCCeEEecH-HHHHHH
Confidence            5678899999999999999999998  5667775 445543

>smart00072 GuKc Guanylate kinase homologues

Probab=98.45  E-value=1.5e-07  Score=75.12  Aligned_cols=92  Identities=13%  Similarity=0.034  Sum_probs=61.3

Q ss_pred             eEEEEEcCCCCCchHHHHHHHHHh----CCCeeeCchhhhhccCCCCchH----HHHHHHHHcCCcchHHH--------H
Q 030464           79 VHWAFIGSPRAKKHVYAEMLSKLL----EVPRISMSSIVRQDLSPRSSLH----KQIANAVNRGEVVSEDI--------I  142 (177)
Q Consensus        79 ~~IlIiGpPGSGKSTlA~~LAk~l----gl~~Is~~dLlr~el~~~s~lg----k~i~~~l~~G~~Ipdel--------i  142 (177)
                      ..|+|+||+||||+|+++.|.+.+    ...+..+..-.|.....+.++.    +++.+.+++|+.++...        -
T Consensus         3 r~ivl~Gpsg~GK~tl~~~L~~~~~~~~~~~~~~TtR~~r~~e~~g~dy~fvs~~ef~~~i~~g~fve~~~~~g~~YGt~   82 (184)
T smart00072        3 RPIVLSGPSGVGKGTLLAELIQEIPDAFERVVSHTTRPPRPGEVNGVDYHFVSREEFEDDIKSGLFLEWGEYSGNYYGTS   82 (184)
T ss_pred             cEEEEECCCCCCHHHHHHHHHhcCCcceEeeeeecCCCCCCCCcCCceEEECCHHHHHHHHHcCCeEEEEEEcCcCcccC
Confidence            468999999999999999998885    3334344444443322333332    66777888887766432        2


Q ss_pred             HHHHHHHHHccCCCCcceEEEeCCCCCHHHHHh
Q 030464          143 FGLLSKRLEDGYYRGEIGFILDGLPRSRIQATI  175 (177)
Q Consensus       143 ~~Ll~~~L~~~~~~~~~G~ILDGfPrt~~QAe~  175 (177)
                      .+.+++.+.+     .+.+|||+.|....|++.
T Consensus        83 ~~~i~~~~~~-----~~~~ild~~~~~~~~l~~  110 (184)
T smart00072       83 KETIRQVAEQ-----GKHCLLDIDPQGVKQLRK  110 (184)
T ss_pred             HHHHHHHHHc-----CCeEEEEECHHHHHHHHH
Confidence            2345555543     468999999998888764

Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions.

>PRK14021 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional

Probab=98.44  E-value=3.1e-07  Score=85.30  Aligned_cols=44  Identities=14%  Similarity=0.231  Sum_probs=40.1

Q ss_pred             ccCCCeEEEEEcCCCCCchHHHHHHHHHhCCCeeeCchhhhhcc
Q 030464           74 ERRRGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDL  117 (177)
Q Consensus        74 ~~~~~~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~dLlr~el  117 (177)
                      .|-|-.+|+++|.|||||||+++.||+.+|++++++++++.+..
T Consensus         2 ~~~~~~~i~LiG~~GaGKttvg~~LA~~L~~~fiD~D~~ie~~~   45 (542)
T PRK14021          2 KPTRRPQAVIIGMMGAGKTRVGKEVAQMMRLPFADADVEIEREI   45 (542)
T ss_pred             CCCCCccEEEECCCCCCHHHHHHHHHHHhCCCEEEchHHHHHHH
Confidence            35677899999999999999999999999999999999888754

>PLN02199 shikimate kinase

Probab=98.44  E-value=6.1e-07  Score=78.03  Aligned_cols=69  Identities=17%  Similarity=0.228  Sum_probs=49.9

Q ss_pred             CCeEEEEEcCCCCCchHHHHHHHHHhCCCeeeCchhhhhccCCCCchHHHHHHHHHcCCcchHHHHHHHHHHH
Q 030464           77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGLLSKR  149 (177)
Q Consensus        77 ~~~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~dLlr~el~~~s~lgk~i~~~l~~G~~Ipdeli~~Ll~~~  149 (177)
                      ++.+|+|+|.+||||||+++.||+.+|+++|+++.++++.... ..+.+.++   ..|+..-.+...+++++-
T Consensus       101 ~~~~I~LIG~~GSGKSTVgr~LA~~Lg~~fIDtD~lIe~~~~G-~sI~eIf~---~~GE~~FR~~E~e~L~~L  169 (303)
T PLN02199        101 NGRSMYLVGMMGSGKTTVGKLMSKVLGYTFFDCDTLIEQAMNG-TSVAEIFV---HHGENFFRGKETDALKKL  169 (303)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHhCCCEEehHHHHHHHhcC-CCHHHHHH---HhCHHHHHHHHHHHHHHH
Confidence            4678999999999999999999999999999999999986432 22222221   235555555555555553

>PRK00023 cmk cytidylate kinase; Provisional

Probab=98.42  E-value=6.8e-07  Score=74.22  Aligned_cols=39  Identities=21%  Similarity=0.274  Sum_probs=36.6

Q ss_pred             CCeEEEEEcCCCCCchHHHHHHHHHhCCCeeeCchhhhh
Q 030464           77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQ  115 (177)
Q Consensus        77 ~~~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~dLlr~  115 (177)
                      ++++|.|.|+|||||||+|+.|++++|+++++.++++|.
T Consensus         3 ~~~~i~i~g~~gsGksti~~~la~~~~~~~~~~~~~~r~   41 (225)
T PRK00023          3 KAIVIAIDGPAGSGKGTVAKILAKKLGFHYLDTGAMYRA   41 (225)
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHHhCCCcccCchhHHH
Confidence            457899999999999999999999999999999999886

>PRK06547 hypothetical protein; Provisional

Probab=98.42  E-value=5.5e-07  Score=72.04  Aligned_cols=41  Identities=10%  Similarity=0.034  Sum_probs=36.7

Q ss_pred             cCCCeEEEEEcCCCCCchHHHHHHHHHhCCCeeeCchhhhh
Q 030464           75 RRRGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQ  115 (177)
Q Consensus        75 ~~~~~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~dLlr~  115 (177)
                      ..+++.|+|.|++||||||+|+.|++.+++++++++++...
T Consensus        12 ~~~~~~i~i~G~~GsGKTt~a~~l~~~~~~~~~~~d~~~~~   52 (172)
T PRK06547         12 GGGMITVLIDGRSGSGKTTLAGALAARTGFQLVHLDDLYPG   52 (172)
T ss_pred             cCCCEEEEEECCCCCCHHHHHHHHHHHhCCCeecccceecc
Confidence            35678899999999999999999999999999999988753

>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated

Probab=98.41  E-value=2.1e-07  Score=74.36  Aligned_cols=39  Identities=21%  Similarity=0.237  Sum_probs=32.6

Q ss_pred             eEEEEEcCCCCCchHHHHHHHHHhC--CCeeeCchhhhhcc
Q 030464           79 VHWAFIGSPRAKKHVYAEMLSKLLE--VPRISMSSIVRQDL  117 (177)
Q Consensus        79 ~~IlIiGpPGSGKSTlA~~LAk~lg--l~~Is~~dLlr~el  117 (177)
                      ++|+|+|+||||||++|..+++.++  +.|+..+...+.++
T Consensus         2 ~~ili~G~~~sGKS~~a~~l~~~~~~~~~~iat~~~~~~e~   42 (170)
T PRK05800          2 MLILVTGGARSGKSRFAERLAAQSGLQVLYIATAQPFDDEM   42 (170)
T ss_pred             CEEEEECCCCccHHHHHHHHHHHcCCCcEeCcCCCCChHHH
Confidence            4799999999999999999999987  56777776666554

>PRK03333 coaE dephospho-CoA kinase/protein folding accessory domain-containing protein; Provisional

Probab=98.41  E-value=7.1e-07  Score=79.97  Aligned_cols=50  Identities=16%  Similarity=0.205  Sum_probs=42.2

Q ss_pred             eEEEEEcCCCCCchHHHHHHHHHhCCCeeeCchhhhhccCCCCchHHHHHH
Q 030464           79 VHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIAN  129 (177)
Q Consensus        79 ~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~dLlr~el~~~s~lgk~i~~  129 (177)
                      ++|.|+|++||||||+|+.|++ +|+++|+.+.+.++.++.++.....+.+
T Consensus         2 ~~IgltG~igsGKStv~~~L~~-~G~~vidaD~i~~~l~~~~~~~~~~i~~   51 (395)
T PRK03333          2 LRIGLTGGIGAGKSTVAARLAE-LGAVVVDADVLAREVVEPGTEGLAALVA   51 (395)
T ss_pred             eEEEEECCCCCCHHHHHHHHHH-CCCeEEehHHHHHHHhcCChHHHHHHHH
Confidence            5799999999999999999987 8999999999999988876654444443

>PRK12338 hypothetical protein; Provisional

Probab=98.40  E-value=9.9e-07  Score=77.28  Aligned_cols=44  Identities=14%  Similarity=0.163  Sum_probs=39.1

Q ss_pred             CCCeEEEEEcCCCCCchHHHHHHHHHhCCCeeeCchhhhhccCC
Q 030464           76 RRGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSP  119 (177)
Q Consensus        76 ~~~~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~dLlr~el~~  119 (177)
                      ++|..|+|.|+|||||||+|+.||+.+|+.++..+|.+|+.+..
T Consensus         2 ~~p~ii~i~G~sGsGKST~a~~la~~l~~~~~~~tD~~r~~~~~   45 (319)
T PRK12338          2 RKPYVILIGSASGIGKSTIASELARTLNIKHLIETDFIREVVRG   45 (319)
T ss_pred             CCcEEEEEECCCCCCHHHHHHHHHHHCCCeEEccChHHHHHHcC
Confidence            46778999999999999999999999999999888999987653

>PRK03731 aroL shikimate kinase II; Reviewed

Probab=98.40  E-value=3.5e-07  Score=71.54  Aligned_cols=38  Identities=11%  Similarity=0.117  Sum_probs=34.5

Q ss_pred             eEEEEEcCCCCCchHHHHHHHHHhCCCeeeCchhhhhc
Q 030464           79 VHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQD  116 (177)
Q Consensus        79 ~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~dLlr~e  116 (177)
                      .+|+|+|+|||||||+++.||+.+|+++++.+.++...
T Consensus         3 ~~i~~~G~~GsGKst~~~~la~~lg~~~~d~D~~~~~~   40 (171)
T PRK03731          3 QPLFLVGARGCGKTTVGMALAQALGYRFVDTDQWLQST   40 (171)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHhCCCEEEccHHHHHH
Confidence            46899999999999999999999999999998877654

>PLN02422 dephospho-CoA kinase

Probab=98.39  E-value=5.4e-07  Score=75.68  Aligned_cols=52  Identities=15%  Similarity=0.201  Sum_probs=43.5

Q ss_pred             eEEEEEcCCCCCchHHHHHHHHHhCCCeeeCchhhhhccCCCCchHHHHHHHH
Q 030464           79 VHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAV  131 (177)
Q Consensus        79 ~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~dLlr~el~~~s~lgk~i~~~l  131 (177)
                      ..|.|+|++||||||+++.|+ ++|+++|+.|++.++.+.+++.....+.+..
T Consensus         2 ~~igltG~igsGKstv~~~l~-~~g~~~idaD~~~~~l~~~g~~~~~~l~~~F   53 (232)
T PLN02422          2 RVVGLTGGIASGKSTVSNLFK-SSGIPVVDADKVARDVLKKGSGGWKRVVAAF   53 (232)
T ss_pred             eEEEEECCCCCCHHHHHHHHH-HCCCeEEehhHHHHHHHHhhHHHHHHHHHHh
Confidence            368999999999999999998 6899999999999998887766555554443

>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]

Probab=98.39  E-value=2.5e-07  Score=74.79  Aligned_cols=37  Identities=19%  Similarity=0.351  Sum_probs=34.5

Q ss_pred             eEEEEEcCCCCCchHHHHHHHHHhCCCeeeCchhhhhc
Q 030464           79 VHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQD  116 (177)
Q Consensus        79 ~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~dLlr~e  116 (177)
                      |+|+|+|.||+||||+|++|+ ++|+.++++.+++.+.
T Consensus         1 m~I~ITGTPGvGKTT~~~~L~-~lg~~~i~l~el~~e~   37 (180)
T COG1936           1 MLIAITGTPGVGKTTVCKLLR-ELGYKVIELNELAKEN   37 (180)
T ss_pred             CeEEEeCCCCCchHHHHHHHH-HhCCceeeHHHHHHhc
Confidence            579999999999999999999 9999999999998863

>PRK13951 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional

Probab=98.38  E-value=4.9e-07  Score=83.15  Aligned_cols=38  Identities=16%  Similarity=0.273  Sum_probs=35.4

Q ss_pred             eEEEEEcCCCCCchHHHHHHHHHhCCCeeeCchhhhhc
Q 030464           79 VHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQD  116 (177)
Q Consensus        79 ~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~dLlr~e  116 (177)
                      |+|+|+|+|||||||+++.||+.+|++++++++++.+.
T Consensus         1 m~I~l~G~~GsGKSTv~~~La~~lg~~~id~D~~i~~~   38 (488)
T PRK13951          1 MRIFLVGMMGSGKSTIGKRVSEVLDLQFIDMDEEIERR   38 (488)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHcCCeEEECcHHHHHH
Confidence            47999999999999999999999999999999988764

>PRK13975 thymidylate kinase; Provisional

Probab=98.37  E-value=2.1e-06  Score=68.33  Aligned_cols=49  Identities=16%  Similarity=0.155  Sum_probs=36.0

Q ss_pred             CeEEEEEcCCCCCchHHHHHHHHHhCCCeeeCchhhhhccCCCCchHHHHHHHHHcC
Q 030464           78 GVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRG  134 (177)
Q Consensus        78 ~~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~dLlr~el~~~s~lgk~i~~~l~~G  134 (177)
                      ++.|+|.|++||||||+++.|+++++..+...        ...+.+++.+++.+..+
T Consensus         2 ~~~I~ieG~~GsGKtT~~~~L~~~l~~~~~~~--------~~~~~~g~~ir~~~~~~   50 (196)
T PRK13975          2 NKFIVFEGIDGSGKTTQAKLLAEKLNAFWTCE--------PTDGKIGKLIREILSGS   50 (196)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHhCCCeeEC--------CCCChHHHHHHHHHccC
Confidence            36799999999999999999999998543211        12345677777777655

>PRK05057 aroK shikimate kinase I; Reviewed

Probab=98.37  E-value=5e-07  Score=71.83  Aligned_cols=40  Identities=13%  Similarity=0.131  Sum_probs=35.6

Q ss_pred             CCeEEEEEcCCCCCchHHHHHHHHHhCCCeeeCchhhhhc
Q 030464           77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQD  116 (177)
Q Consensus        77 ~~~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~dLlr~e  116 (177)
                      ++.+|+|+|++||||||+++.|++.+|+++++.+..+.+.
T Consensus         3 ~~~~I~liG~~GaGKStl~~~La~~l~~~~vd~D~~i~~~   42 (172)
T PRK05057          3 EKRNIFLVGPMGAGKSTIGRQLAQQLNMEFYDSDQEIEKR   42 (172)
T ss_pred             CCCEEEEECCCCcCHHHHHHHHHHHcCCcEEECCchHHHH
Confidence            4567999999999999999999999999999998766554

>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family

Probab=98.35  E-value=1.7e-06  Score=67.12  Aligned_cols=33  Identities=18%  Similarity=0.232  Sum_probs=30.6

Q ss_pred             EEEEcCCCCCchHHHHHHHHHhCCCeeeCchhh
Q 030464           81 WAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIV  113 (177)
Q Consensus        81 IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~dLl  113 (177)
                      |+|+|+|||||||+|+.|++.++..+++.+++.
T Consensus         1 i~l~G~~GsGKSTla~~l~~~l~~~~v~~D~~~   33 (163)
T TIGR01313         1 FVLMGVAGSGKSTIASALAHRLGAKFIEGDDLH   33 (163)
T ss_pred             CEEECCCCCCHHHHHHHHHHhcCCeEEeCcccc
Confidence            578999999999999999999999999998864

This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.

>PRK14733 coaE dephospho-CoA kinase; Provisional

Probab=98.35  E-value=7.9e-07  Score=73.28  Aligned_cols=51  Identities=20%  Similarity=0.216  Sum_probs=42.1

Q ss_pred             CCeEEEEEcCCCCCchHHHHHHHHHhCCCeeeCchhhhhccCCCCchHHHHH
Q 030464           77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIA  128 (177)
Q Consensus        77 ~~~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~dLlr~el~~~s~lgk~i~  128 (177)
                      -+++|.|+|++||||||+++.|++.+|+++++.+.+.++.+.. ....+.+.
T Consensus         5 ~~~~IglTG~iGsGKStv~~~l~~~lg~~vidaD~i~~~l~~~-~~~~~~i~   55 (204)
T PRK14733          5 NTYPIGITGGIASGKSTATRILKEKLNLNVVCADTISREITKK-PSVIKKIA   55 (204)
T ss_pred             ceEEEEEECCCCCCHHHHHHHHHHHcCCeEEeccHHHHHHHCc-hHHHHHHH
Confidence            4578999999999999999999999999999999998887765 33433333

>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed

Probab=98.35  E-value=1.7e-06  Score=82.61  Aligned_cols=38  Identities=16%  Similarity=0.169  Sum_probs=35.8

Q ss_pred             eEEEEEcCCCCCchHHHHHHHHHhCCCeeeCchhhhhc
Q 030464           79 VHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQD  116 (177)
Q Consensus        79 ~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~dLlr~e  116 (177)
                      ++|.|.|||||||||+|+.||+++|+.|++.|.++|..
T Consensus         2 ~~i~I~G~~GsGKST~ak~la~~l~~~~~~~g~~~r~~   39 (712)
T PRK09518          2 IIVAIDGPAGVGKSSVSRALAQYLGYAYLDTGAMYRAC   39 (712)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhCCcEeecCcEeHHH
Confidence            47999999999999999999999999999999999873

>PTZ00451 dephospho-CoA kinase; Provisional

Probab=98.34  E-value=7.8e-07  Score=75.17  Aligned_cols=52  Identities=17%  Similarity=0.244  Sum_probs=44.9

Q ss_pred             eEEEEEcCCCCCchHHHHHHHHHhCCCeeeCchhhhhccCCCCchHHHHHHH
Q 030464           79 VHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANA  130 (177)
Q Consensus        79 ~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~dLlr~el~~~s~lgk~i~~~  130 (177)
                      ++|.|+|..||||||+++.|++.+|+++|+.|.+.++.++++....+.+.+.
T Consensus         2 ~iIGlTGgIgSGKStVs~~L~~~~G~~viDaD~iar~l~~~~~~~~~~i~~~   53 (244)
T PTZ00451          2 ILIGLTGGIACGKSTVSRILREEHHIEVIDADLVVRELQAPNMACTRKIAAR   53 (244)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHcCCeEEehHHHHHHHHcCChHHHHHHHHH
Confidence            5789999999999999999999899999999999999888777665555443

>PF01121 CoaE: Dephospho-CoA kinase; InterPro: IPR001977 This family contains dephospho-CoA kinases (2

Probab=98.33  E-value=7.6e-07  Score=71.87  Aligned_cols=52  Identities=19%  Similarity=0.259  Sum_probs=45.0

Q ss_pred             eEEEEEcCCCCCchHHHHHHHHHhCCCeeeCchhhhhccCCCCchHHHHHHHH
Q 030464           79 VHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAV  131 (177)
Q Consensus        79 ~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~dLlr~el~~~s~lgk~i~~~l  131 (177)
                      +.|.|+|+.||||||+++.|++ +|+++|+++++.++.+.++.+..+.+.+..
T Consensus         1 ~iIglTG~igsGKStv~~~l~~-~G~~vidaD~i~~~l~~~~~~~~~~l~~~F   52 (180)
T PF01121_consen    1 MIIGLTGGIGSGKSTVSKILAE-LGFPVIDADEIAHELYEPGSEGYKALKERF   52 (180)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHH-TT-EEEEHHHHHHHCTSCTCHHHHHHHHHH
T ss_pred             CEEEEECCCcCCHHHHHHHHHH-CCCCEECccHHHHHHhhcCHHHHHHHHHHc
Confidence            4689999999999999999988 999999999999999988887777766654

7.1.24 from EC), which catalyzes the final step in CoA biosynthesis, the phosphorylation of the 3'-hydroxyl group of ribose using ATP as a phosphate donor. The crystal structures of a number of the proteins in this entry have been determined, including the structure of the protein from Haemophilus influenzae to 2.0-A resolution in a comlex with ATP. The protein consists of three domains: the nucleotide-binding domain with a five-stranded parallel beta-sheet, the substrate-binding alpha-helical domain, and the lid domain formed by a pair of alpha-helices; the overall topology of the protein resembles the structures of other nucleotide kinases [].; GO: 0004140 dephospho-CoA kinase activity, 0005524 ATP binding, 0015937 coenzyme A biosynthetic process; PDB: 1VHL_A 1N3B_A 1VIY_A 1VHT_B 1T3H_B 1UF9_C 2F6R_A 2GRJ_D 2IF2_C 1JJV_A.

>TIGR00041 DTMP_kinase thymidylate kinase

Probab=98.33  E-value=3.4e-06  Score=67.00  Aligned_cols=51  Identities=22%  Similarity=0.236  Sum_probs=35.6

Q ss_pred             CCeEEEEEcCCCCCchHHHHHHHHHhCC---CeeeCchhhhhccCCCCchHHHHHHHHHc
Q 030464           77 RGVHWAFIGSPRAKKHVYAEMLSKLLEV---PRISMSSIVRQDLSPRSSLHKQIANAVNR  133 (177)
Q Consensus        77 ~~~~IlIiGpPGSGKSTlA~~LAk~lgl---~~Is~~dLlr~el~~~s~lgk~i~~~l~~  133 (177)
                      +++.|+|.|++||||||+++.|++.++.   .++-+      .....+++++.+++.+..
T Consensus         2 ~g~~IvieG~~GsGKsT~~~~L~~~l~~~g~~v~~~------~~~~~~~~~~~i~~~~~~   55 (195)
T TIGR00041         2 RGMFIVIEGIDGAGKTTQANLLKKLLQENGYDVLFT------REPGGTPIGEKIRELLLN   55 (195)
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEE------eCCCCChHHHHHHHHHcC
Confidence            3678999999999999999999999853   22211      112235667777776543

Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate.

>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal

Probab=98.26  E-value=3.4e-06  Score=70.25  Aligned_cols=35  Identities=23%  Similarity=0.408  Sum_probs=27.2

Q ss_pred             EEEEcCCCCCchHHHHHHHHHh---C--CCeeeCchhhhhc
Q 030464           81 WAFIGSPRAKKHVYAEMLSKLL---E--VPRISMSSIVRQD  116 (177)
Q Consensus        81 IlIiGpPGSGKSTlA~~LAk~l---g--l~~Is~~dLlr~e  116 (177)
                      |+|+|+|||||||+|+.|++.+   |  +.+++. |.++..
T Consensus         2 Ivl~G~pGSGKST~a~~La~~l~~~~~~v~~i~~-D~lr~~   41 (249)
T TIGR03574         2 IILTGLPGVGKSTFSKELAKKLSEKNIDVIILGT-DLIRES   41 (249)
T ss_pred             EEEEcCCCCCHHHHHHHHHHHHHHcCCceEEEcc-HHHHHH
Confidence            7899999999999999999987   3  345554 555544

Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.

>PLN02924 thymidylate kinase

Probab=98.25  E-value=6.8e-06  Score=68.22  Aligned_cols=63  Identities=16%  Similarity=0.163  Sum_probs=46.5

Q ss_pred             cccCCCeEEEEEcCCCCCchHHHHHHHHHhCCCeeeCchhhhhccCCCCchHHHHHHHHHcCCcc
Q 030464           73 RERRRGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVV  137 (177)
Q Consensus        73 ~~~~~~~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~dLlr~el~~~s~lgk~i~~~l~~G~~I  137 (177)
                      ..+.+++-|+|.|.+||||||+++.|++.++...+.+ ..++. -...+.+|+.+++.+..+..+
T Consensus        11 ~~~~~g~~IviEGiDGsGKsTq~~~L~~~l~~~g~~v-~~~~e-p~~~~~~g~~ir~~l~~~~~~   73 (220)
T PLN02924         11 SVESRGALIVLEGLDRSGKSTQCAKLVSFLKGLGVAA-ELWRF-PDRTTSVGQMISAYLSNKSQL   73 (220)
T ss_pred             CcCCCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCCc-eeeeC-CCCCChHHHHHHHHHhCCCCC
Confidence            3346788899999999999999999999997665554 22332 234577888898888766544

>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars

Probab=98.24  E-value=1.5e-06  Score=59.32  Aligned_cols=23  Identities=26%  Similarity=0.263  Sum_probs=21.1

Q ss_pred             EEEEEcCCCCCchHHHHHHHHHh
Q 030464           80 HWAFIGSPRAKKHVYAEMLSKLL  102 (177)
Q Consensus        80 ~IlIiGpPGSGKSTlA~~LAk~l  102 (177)
                      .|+|+|+|||||||+++.|++.+
T Consensus         1 ~i~i~G~~gsGKst~~~~l~~~l   23 (69)
T cd02019           1 IIAITGGSGSGKSTVAKKLAEQL   23 (69)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHh
Confidence            37889999999999999999985

Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.

>PRK12269 bifunctional cytidylate kinase/ribosomal protein S1; Provisional

Probab=98.24  E-value=1.1e-06  Score=85.75  Aligned_cols=45  Identities=18%  Similarity=0.098  Sum_probs=41.0

Q ss_pred             CcccCCCeEEEEEcCCCCCchHHHHHHHHHhCCCeeeCchhhhhc
Q 030464           72 GRERRRGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQD  116 (177)
Q Consensus        72 ~~~~~~~~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~dLlr~e  116 (177)
                      -|.|+..+.|.|.|||||||||+|+.||+.+|+.|+++|.++|..
T Consensus        28 ~~~~m~~~~i~idG~~gsGKst~~~~la~~l~~~~~~~g~~yRa~   72 (863)
T PRK12269         28 QCRPMGTVIIALDGPAGSGKSSVCRLLASRLGAQCLNTGSFYRAF   72 (863)
T ss_pred             eecccCceEEEEECCCCCCHHHHHHHHHHHhCCcEEeHHHHHHHH
Confidence            356667789999999999999999999999999999999999974

>PRK14731 coaE dephospho-CoA kinase; Provisional

Probab=98.23  E-value=2.4e-06  Score=69.89  Aligned_cols=50  Identities=8%  Similarity=0.077  Sum_probs=40.5

Q ss_pred             CCeEEEEEcCCCCCchHHHHHHHHHhCCCeeeCchhhhhccCCCCchHHHH
Q 030464           77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQI  127 (177)
Q Consensus        77 ~~~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~dLlr~el~~~s~lgk~i  127 (177)
                      .+..|.|+|++||||||+++.|++ +|+++++.+.+.++...+.....+.+
T Consensus         4 ~~~~igitG~igsGKSt~~~~l~~-~g~~v~d~D~i~~~~~~~~~~~~~~~   53 (208)
T PRK14731          4 LPFLVGVTGGIGSGKSTVCRFLAE-MGCELFEADRVAKELQVTDPEVIEGI   53 (208)
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHH-CCCeEEeccHHHHHHcCCcHHHHHHH
Confidence            356789999999999999999986 89999999988888766655443333

>KOG3354 consensus Gluconate kinase [Carbohydrate transport and metabolism]

Probab=98.22  E-value=6.3e-06  Score=66.13  Aligned_cols=53  Identities=13%  Similarity=0.115  Sum_probs=40.8

Q ss_pred             CCeEEEEEcCCCCCchHHHHHHHHHhCCCeeeCchhhhhccCCCCchHHHHHHHHHcCCcchH
Q 030464           77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSE  139 (177)
Q Consensus        77 ~~~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~dLlr~el~~~s~lgk~i~~~l~~G~~Ipd  139 (177)
                      .+-.|+|+|+.||||||+++.|++++++.+++-+|+--.+          -.+.|.+|-.+.|
T Consensus        11 ~k~~i~vmGvsGsGKSTigk~L~~~l~~~F~dgDd~Hp~~----------NveKM~~GipLnD   63 (191)
T KOG3354|consen   11 FKYVIVVMGVSGSGKSTIGKALSEELGLKFIDGDDLHPPA----------NVEKMTQGIPLND   63 (191)
T ss_pred             CceeEEEEecCCCChhhHHHHHHHHhCCcccccccCCCHH----------HHHHHhcCCCCCc
Confidence            3447899999999999999999999999999988864432          2344555655554

>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed

Probab=98.21  E-value=5.5e-06  Score=71.73  Aligned_cols=45  Identities=29%  Similarity=0.422  Sum_probs=39.0

Q ss_pred             CcccCCCeEEEEEcCCCCCchHHHHHHHHHhCCCeeeCchhhhhc
Q 030464           72 GRERRRGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQD  116 (177)
Q Consensus        72 ~~~~~~~~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~dLlr~e  116 (177)
                      ...+.++.+|+|+|+|||||||+++.|++.+|+++++++..+.+.
T Consensus       127 ~~~~~~~~~I~l~G~~GsGKStvg~~La~~Lg~~~id~D~~i~~~  171 (309)
T PRK08154        127 GRRAARRRRIALIGLRGAGKSTLGRMLAARLGVPFVELNREIERE  171 (309)
T ss_pred             hhhccCCCEEEEECCCCCCHHHHHHHHHHHcCCCEEeHHHHHHHH
Confidence            335567789999999999999999999999999999998776654

>PRK13477 bifunctional pantoate ligase/cytidylate kinase; Provisional

Probab=98.21  E-value=2.2e-06  Score=79.38  Aligned_cols=40  Identities=20%  Similarity=0.164  Sum_probs=37.9

Q ss_pred             CCeEEEEEcCCCCCchHHHHHHHHHhCCCeeeCchhhhhc
Q 030464           77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQD  116 (177)
Q Consensus        77 ~~~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~dLlr~e  116 (177)
                      ++++|.|.||+||||||+|+.|++++|+.+++.|+++|..
T Consensus       283 ~~~ii~i~G~sgsGKst~a~~la~~l~~~~~d~g~~YR~~  322 (512)
T PRK13477        283 RQPIIAIDGPAGAGKSTVTRAVAKKLGLLYLDTGAMYRAV  322 (512)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHcCCeEecCCceehHH
Confidence            7789999999999999999999999999999999999973

>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport

Probab=98.20  E-value=1.1e-06  Score=64.47  Aligned_cols=33  Identities=27%  Similarity=0.390  Sum_probs=27.8

Q ss_pred             EEEEcCCCCCchHHHHHHHHHhCCCe--eeCchhh
Q 030464           81 WAFIGSPRAKKHVYAEMLSKLLEVPR--ISMSSIV  113 (177)
Q Consensus        81 IlIiGpPGSGKSTlA~~LAk~lgl~~--Is~~dLl  113 (177)
                      |+|.||||+|||++++.+|+.++.++  ++.+++.
T Consensus         1 ill~G~~G~GKT~l~~~la~~l~~~~~~i~~~~~~   35 (132)
T PF00004_consen    1 ILLHGPPGTGKTTLARALAQYLGFPFIEIDGSELI   35 (132)
T ss_dssp             EEEESSTTSSHHHHHHHHHHHTTSEEEEEETTHHH
T ss_pred             CEEECcCCCCeeHHHHHHHhhcccccccccccccc
Confidence            68999999999999999999999765  4444554

Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....

>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor

Probab=98.17  E-value=1e-05  Score=63.40  Aligned_cols=50  Identities=16%  Similarity=0.137  Sum_probs=36.0

Q ss_pred             eEEEEEcCCCCCchHHHHHHHHHh---CCCeeeCchhhhhccCCCCchHHHHHHHHHcC
Q 030464           79 VHWAFIGSPRAKKHVYAEMLSKLL---EVPRISMSSIVRQDLSPRSSLHKQIANAVNRG  134 (177)
Q Consensus        79 ~~IlIiGpPGSGKSTlA~~LAk~l---gl~~Is~~dLlr~el~~~s~lgk~i~~~l~~G  134 (177)
                      +.|+|.|++||||||+++.|++.+   |..++.+...      ..+..++.+++++..+
T Consensus         1 ~~I~ieG~~GsGKtT~~~~L~~~l~~~g~~v~~~~~~------~~~~~~~~~~~~~~~~   53 (200)
T cd01672           1 MFIVFEGIDGAGKTTLIELLAERLEARGYEVVLTREP------GGTPIGEAIRELLLDP   53 (200)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCC------CCCchHHHHHHHHhcc
Confidence            358999999999999999999988   6666555431      1234566677766654

TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).

>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C

Probab=98.17  E-value=7.3e-07  Score=65.27  Aligned_cols=22  Identities=27%  Similarity=0.323  Sum_probs=21.2

Q ss_pred             EEEEcCCCCCchHHHHHHHHHh
Q 030464           81 WAFIGSPRAKKHVYAEMLSKLL  102 (177)
Q Consensus        81 IlIiGpPGSGKSTlA~~LAk~l  102 (177)
                      |+|.|+|||||||+|+.|++.+
T Consensus         1 I~i~G~~GsGKtTia~~L~~~~   22 (129)
T PF13238_consen    1 IGISGIPGSGKTTIAKELAERL   22 (129)
T ss_dssp             EEEEESTTSSHHHHHHHHHHHH
T ss_pred             CEEECCCCCCHHHHHHHHHHHH
Confidence            7899999999999999999998

...

>PRK11860 bifunctional 3-phosphoshikimate 1-carboxyvinyltransferase/cytidine monophosphate kinase; Provisional

Probab=98.16  E-value=4.5e-06  Score=79.19  Aligned_cols=40  Identities=15%  Similarity=0.100  Sum_probs=36.9

Q ss_pred             CCeEEEEEcCCCCCchHHHHHHHHHhCCCeeeCchhhhhc
Q 030464           77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQD  116 (177)
Q Consensus        77 ~~~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~dLlr~e  116 (177)
                      +.++|.|.||+||||||+|+.||+++|++|++.++++|..
T Consensus       441 ~~~~i~i~g~~~~gks~~~~~l~~~~~~~~~~~~~~~~~~  480 (661)
T PRK11860        441 RVPVICIDGPTASGKGTVAARVAEALGYHYLDSGALYRLT  480 (661)
T ss_pred             CcceEEeeCCCCCCHHHHHHHHHHHhCCeEecHHHhhhHH
Confidence            3568999999999999999999999999999999999873

>TIGR02881 spore_V_K stage V sporulation protein K

Probab=98.15  E-value=9.2e-06  Score=68.29  Aligned_cols=27  Identities=33%  Similarity=0.570  Sum_probs=24.1

Q ss_pred             CCCeEEEEEcCCCCCchHHHHHHHHHh
Q 030464           76 RRGVHWAFIGSPRAKKHVYAEMLSKLL  102 (177)
Q Consensus        76 ~~~~~IlIiGpPGSGKSTlA~~LAk~l  102 (177)
                      .....++|.||||+||||+|+.+|+.+
T Consensus        40 ~~~~~vll~GppGtGKTtlA~~ia~~l   66 (261)
T TIGR02881        40 KQVLHMIFKGNPGTGKTTVARILGKLF   66 (261)
T ss_pred             CCcceEEEEcCCCCCHHHHHHHHHHHH
Confidence            456789999999999999999999865

Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.

>PRK00698 tmk thymidylate kinase; Validated

Probab=98.13  E-value=8.6e-06  Score=64.87  Aligned_cols=54  Identities=20%  Similarity=0.276  Sum_probs=36.0

Q ss_pred             CCeEEEEEcCCCCCchHHHHHHHHHhCCCeeeCchhhhhccCCCCchHHHHHHHHHc
Q 030464           77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNR  133 (177)
Q Consensus        77 ~~~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~dLlr~el~~~s~lgk~i~~~l~~  133 (177)
                      +++.|+|.|++||||||+++.|++.++.....  ..+..+.. .+..++.+++.+..
T Consensus         2 ~~~~I~ieG~~gsGKsT~~~~L~~~l~~~~~~--~~~~~~p~-~~~~~~~~~~~~~~   55 (205)
T PRK00698          2 RGMFITIEGIDGAGKSTQIELLKELLEQQGRD--VVFTREPG-GTPLGEKLRELLLD   55 (205)
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHHHHHcCCc--eeEeeCCC-CChHHHHHHHHHhc
Confidence            56789999999999999999999987322110  11111111 35577777777763

>PRK14732 coaE dephospho-CoA kinase; Provisional

Probab=98.11  E-value=6.4e-06  Score=67.13  Aligned_cols=49  Identities=16%  Similarity=0.216  Sum_probs=41.3

Q ss_pred             EEEEcCCCCCchHHHHHHHHHhCCCeeeCchhhhhccCCCCchHHHHHHH
Q 030464           81 WAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANA  130 (177)
Q Consensus        81 IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~dLlr~el~~~s~lgk~i~~~  130 (177)
                      |.|+|++||||||+++.|++ +|.++|+.+++.+..+..+....+.+.+.
T Consensus         2 i~itG~~gsGKst~~~~l~~-~g~~~i~~D~i~~~~~~~~~~~~~~i~~~   50 (196)
T PRK14732          2 IGITGMIGGGKSTALKILEE-LGAFGISADRLAKRYTEPDSPILSELVSL   50 (196)
T ss_pred             EEEECCCCccHHHHHHHHHH-CCCEEEecchHHHHHHhcCcHHHHHHHHH
Confidence            78999999999999998865 79999999999999887777666555543

>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT)

Probab=98.07  E-value=3.8e-06  Score=66.36  Aligned_cols=37  Identities=24%  Similarity=0.339  Sum_probs=29.9

Q ss_pred             CeEEEEEcCCCCCchHHHHHHHHHhCCC--eeeCchhhh
Q 030464           78 GVHWAFIGSPRAKKHVYAEMLSKLLEVP--RISMSSIVR  114 (177)
Q Consensus        78 ~~~IlIiGpPGSGKSTlA~~LAk~lgl~--~Is~~dLlr  114 (177)
                      +..|++.|+|||||||+|+.|++.++..  |++.+++..
T Consensus         2 ~~~i~l~G~~gsGKst~a~~l~~~~~~~~~~~~~D~~~~   40 (175)
T cd00227           2 GRIIILNGGSSAGKSSIARALQSVLAEPWLHFGVDSFIE   40 (175)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHhhCCCccccCccHHHH
Confidence            4578999999999999999999998654  556665544

Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.

>PRK04220 2-phosphoglycerate kinase; Provisional

Probab=98.06  E-value=1.3e-05  Score=69.86  Aligned_cols=40  Identities=15%  Similarity=0.130  Sum_probs=34.0

Q ss_pred             CCeEEEEEcCCCCCchHHHHHHHHHhCCC-eeeCchhhhhcc
Q 030464           77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVP-RISMSSIVRQDL  117 (177)
Q Consensus        77 ~~~~IlIiGpPGSGKSTlA~~LAk~lgl~-~Is~~dLlr~el  117 (177)
                      +|+.|+|.|++||||||+|..||+.+|+. +++ .|.+|+.+
T Consensus        91 ~p~iIlI~G~sgsGKStlA~~La~~l~~~~vi~-~D~~re~~  131 (301)
T PRK04220         91 EPIIILIGGASGVGTSTIAFELASRLGIRSVIG-TDSIREVM  131 (301)
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHhCCCEEEe-chHHHHHH
Confidence            67889999999999999999999999998 455 56677544

>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]

Probab=98.04  E-value=1e-05  Score=67.44  Aligned_cols=39  Identities=23%  Similarity=0.260  Sum_probs=32.9

Q ss_pred             CCCeEEEEEcCCCCCchHHHHHHHHHhCCC---eeeCchhhh
Q 030464           76 RRGVHWAFIGSPRAKKHVYAEMLSKLLEVP---RISMSSIVR  114 (177)
Q Consensus        76 ~~~~~IlIiGpPGSGKSTlA~~LAk~lgl~---~Is~~dLlr  114 (177)
                      .+.+.|.|.|++||||||+|+.|++.++..   .|+.++.+.
T Consensus         6 ~~~iiIgIaG~SgSGKTTva~~l~~~~~~~~~~~I~~D~YYk   47 (218)
T COG0572           6 EKVIIIGIAGGSGSGKTTVAKELSEQLGVEKVVVISLDDYYK   47 (218)
T ss_pred             CceEEEEEeCCCCCCHHHHHHHHHHHhCcCcceEeecccccc
Confidence            355788899999999999999999999865   777777665

>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]

Probab=98.02  E-value=1.2e-05  Score=67.22  Aligned_cols=24  Identities=29%  Similarity=0.356  Sum_probs=22.1

Q ss_pred             eEEEEEcCCCCCchHHHHHHHHHh
Q 030464           79 VHWAFIGSPRAKKHVYAEMLSKLL  102 (177)
Q Consensus        79 ~~IlIiGpPGSGKSTlA~~LAk~l  102 (177)
                      +-|+++|+|||||||+|+.||+.+
T Consensus         2 pLiIlTGyPgsGKTtfakeLak~L   25 (261)
T COG4088           2 PLIILTGYPGSGKTTFAKELAKEL   25 (261)
T ss_pred             ceEEEecCCCCCchHHHHHHHHHH
Confidence            568999999999999999999986

>smart00382 AAA ATPases associated with a variety of cellular activities

Probab=98.02  E-value=3e-05  Score=55.56  Aligned_cols=28  Identities=29%  Similarity=0.434  Sum_probs=24.7

Q ss_pred             CeEEEEEcCCCCCchHHHHHHHHHhCCC
Q 030464           78 GVHWAFIGSPRAKKHVYAEMLSKLLEVP  105 (177)
Q Consensus        78 ~~~IlIiGpPGSGKSTlA~~LAk~lgl~  105 (177)
                      +..++|+||||+||||+++.|+..++..
T Consensus         2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~   29 (148)
T smart00382        2 GEVILIVGPPGSGKTTLARALARELGPP   29 (148)
T ss_pred             CCEEEEECCCCCcHHHHHHHHHhccCCC
Confidence            4578999999999999999999987654

AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.

>PLN02165 adenylate isopentenyltransferase

Probab=98.02  E-value=6.6e-06  Score=72.53  Aligned_cols=40  Identities=10%  Similarity=0.098  Sum_probs=35.7

Q ss_pred             cccCCCeEEEEEcCCCCCchHHHHHHHHHhCCCeeeCchh
Q 030464           73 RERRRGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSI  112 (177)
Q Consensus        73 ~~~~~~~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~dL  112 (177)
                      +.+.++..|+|+||+|||||++|..||+.++..+|++|.+
T Consensus        38 ~~~~~g~iivIiGPTGSGKStLA~~LA~~l~~eIIsaDs~   77 (334)
T PLN02165         38 EQNCKDKVVVIMGATGSGKSRLSVDLATRFPSEIINSDKM   77 (334)
T ss_pred             ccCCCCCEEEEECCCCCcHHHHHHHHHHHcCCceecCChh
Confidence            3445677899999999999999999999999999999876

>PRK06696 uridine kinase; Validated

Probab=98.02  E-value=6e-06  Score=67.87  Aligned_cols=39  Identities=23%  Similarity=0.324  Sum_probs=32.7

Q ss_pred             CCCeEEEEEcCCCCCchHHHHHHHHHh---CCC--eeeCchhhh
Q 030464           76 RRGVHWAFIGSPRAKKHVYAEMLSKLL---EVP--RISMSSIVR  114 (177)
Q Consensus        76 ~~~~~IlIiGpPGSGKSTlA~~LAk~l---gl~--~Is~~dLlr  114 (177)
                      .++..|.|.|++||||||+|+.|++.+   |.+  ++++++.+.
T Consensus        20 ~~~~iI~I~G~sgsGKSTlA~~L~~~l~~~g~~v~~~~~Ddf~~   63 (223)
T PRK06696         20 TRPLRVAIDGITASGKTTFADELAEEIKKRGRPVIRASIDDFHN   63 (223)
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeccccccC
Confidence            468899999999999999999999998   554  456888764

>PRK12724 flagellar biosynthesis regulator FlhF; Provisional

Probab=98.01  E-value=3e-05  Score=70.44  Aligned_cols=89  Identities=16%  Similarity=0.107  Sum_probs=52.5

Q ss_pred             CCeEEEEEcCCCCCchHHHHHHHHHh----C--CCeeeCchhhhhccCCCCchHHHHHHHHHcCCc--chHHHHHHHHHH
Q 030464           77 RGVHWAFIGSPRAKKHVYAEMLSKLL----E--VPRISMSSIVRQDLSPRSSLHKQIANAVNRGEV--VSEDIIFGLLSK  148 (177)
Q Consensus        77 ~~~~IlIiGpPGSGKSTlA~~LAk~l----g--l~~Is~~dLlr~el~~~s~lgk~i~~~l~~G~~--Ipdeli~~Ll~~  148 (177)
                      ++..|+|+||+||||||++.+||..+    |  +.+++ .|..|..      ...+++.+.+....  .+...+. .+.+
T Consensus       222 ~~~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit-~Dt~R~a------A~eQLk~yAe~lgvp~~~~~~~~-~l~~  293 (432)
T PRK12724        222 QRKVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYT-TDNYRIA------AIEQLKRYADTMGMPFYPVKDIK-KFKE  293 (432)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEec-ccchhhh------HHHHHHHHHHhcCCCeeehHHHH-HHHH
Confidence            45678899999999999999999765    2  33444 3444432      11233443333221  1111122 3334


Q ss_pred             HHHccCCCCcceEEEe--CCC-CCHHHHHhc
Q 030464          149 RLEDGYYRGEIGFILD--GLP-RSRIQATIS  176 (177)
Q Consensus       149 ~L~~~~~~~~~G~ILD--GfP-rt~~QAe~L  176 (177)
                      .+...   ....+|||  |++ ++..|++.|
T Consensus       294 ~l~~~---~~D~VLIDTaGr~~rd~~~l~eL  321 (432)
T PRK12724        294 TLARD---GSELILIDTAGYSHRNLEQLERM  321 (432)
T ss_pred             HHHhC---CCCEEEEeCCCCCccCHHHHHHH
Confidence            45433   24679999  874 888888765

>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B

Probab=98.00  E-value=2.4e-05  Score=57.76  Aligned_cols=84  Identities=15%  Similarity=0.164  Sum_probs=45.9

Q ss_pred             CCeEEEEEcCCCCCchHHHHHHHHHh--------CCCeeeCchhhhhccCCCCchHHHHHHHHHcCCcc--hHHHHHHHH
Q 030464           77 RGVHWAFIGSPRAKKHVYAEMLSKLL--------EVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVV--SEDIIFGLL  146 (177)
Q Consensus        77 ~~~~IlIiGpPGSGKSTlA~~LAk~l--------gl~~Is~~dLlr~el~~~s~lgk~i~~~l~~G~~I--pdeli~~Ll  146 (177)
                      +.-.++|.|+||+|||++++.+++.+        +...+.+.- -..  .....+...+.+.+.....-  ..+-+.+.+
T Consensus         3 ~~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~   79 (131)
T PF13401_consen    3 SQRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNC-PSS--RTPRDFAQEILEALGLPLKSRQTSDELRSLL   79 (131)
T ss_dssp             ----EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEH-HHH--SSHHHHHHHHHHHHT-SSSSTS-HHHHHHHH
T ss_pred             CCcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEe-CCC--CCHHHHHHHHHHHhCccccccCCHHHHHHHH
Confidence            34568899999999999999999976        444443321 111  12233444555555443322  223333666


Q ss_pred             HHHHHccCCCCcceEEEeCC
Q 030464          147 SKRLEDGYYRGEIGFILDGL  166 (177)
Q Consensus       147 ~~~L~~~~~~~~~G~ILDGf  166 (177)
                      .+.+.+..   ..-+|||++
T Consensus        80 ~~~l~~~~---~~~lviDe~   96 (131)
T PF13401_consen   80 IDALDRRR---VVLLVIDEA   96 (131)
T ss_dssp             HHHHHHCT---EEEEEEETT
T ss_pred             HHHHHhcC---CeEEEEeCh
Confidence            67677653   246788876

>PRK05541 adenylylsulfate kinase; Provisional

Probab=97.98  E-value=6.7e-06  Score=64.70  Aligned_cols=42  Identities=21%  Similarity=0.167  Sum_probs=32.8

Q ss_pred             cCCCeEEEEEcCCCCCchHHHHHHHHHhC-----CCeeeCchhhhhcc
Q 030464           75 RRRGVHWAFIGSPRAKKHVYAEMLSKLLE-----VPRISMSSIVRQDL  117 (177)
Q Consensus        75 ~~~~~~IlIiGpPGSGKSTlA~~LAk~lg-----l~~Is~~dLlr~el  117 (177)
                      ..++..|+|.|+|||||||+|+.|++.++     +.+++. +-+++.+
T Consensus         4 ~~~~~~I~i~G~~GsGKst~a~~l~~~l~~~~~~~~~~~~-d~~r~~~   50 (176)
T PRK05541          4 KPNGYVIWITGLAGSGKTTIAKALYERLKLKYSNVIYLDG-DELREIL   50 (176)
T ss_pred             CCCCCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEec-HHHHhhc
Confidence            35677899999999999999999999885     556653 4555543

>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]

Probab=97.97  E-value=4.3e-06  Score=67.24  Aligned_cols=43  Identities=9%  Similarity=0.167  Sum_probs=37.8

Q ss_pred             CCeEEEEEcCCCCCchHHHHHHHHHhCCCeeeCchhhhhccCC
Q 030464           77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSP  119 (177)
Q Consensus        77 ~~~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~dLlr~el~~  119 (177)
                      ..++|+|+|+||+||||+++++++.+.-.-+.++.++..++..
T Consensus         4 ~~mki~ITG~PGvGKtTl~~ki~e~L~~~g~kvgGf~t~EVR~   46 (179)
T COG1618           4 MAMKIFITGRPGVGKTTLVLKIAEKLREKGYKVGGFITPEVRE   46 (179)
T ss_pred             cceEEEEeCCCCccHHHHHHHHHHHHHhcCceeeeEEeeeeec
Confidence            5689999999999999999999999877778888888888764

>PF01745 IPT: Isopentenyl transferase; InterPro: IPR002648 Isopentenyl transferase / dimethylallyl transferase synthesizes isopentenyladensosine 5'-monophosphate, a cytokinin that induces shoot formation on host plants infected with the Ti plasmid []

Probab=97.95  E-value=1.9e-05  Score=66.07  Aligned_cols=84  Identities=21%  Similarity=0.256  Sum_probs=50.1

Q ss_pred             eEEEEEcCCCCCchHHHHHHHHHhCCCeeeCchhhh-hccCCCC------chHH-----HHHHHHHcCCcchHHHHHHHH
Q 030464           79 VHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVR-QDLSPRS------SLHK-----QIANAVNRGEVVSEDIIFGLL  146 (177)
Q Consensus        79 ~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~dLlr-~el~~~s------~lgk-----~i~~~l~~G~~Ipdeli~~Ll  146 (177)
                      ..++|.||+|+|||.+|-.||+++|.++|+.+.+.. .++.-.+      ++..     .-...+..|. ++.+-..+.+
T Consensus         2 ~v~~i~GpT~tGKt~~ai~lA~~~g~pvI~~Driq~y~~l~v~Sgrp~~~el~~~~RiyL~~r~l~~G~-i~a~ea~~~L   80 (233)
T PF01745_consen    2 KVYLIVGPTGTGKTALAIALAQKTGAPVISLDRIQCYPELSVGSGRPTPSELKGTRRIYLDDRPLSDGI-INAEEAHERL   80 (233)
T ss_dssp             EEEEEE-STTSSHHHHHHHHHHHH--EEEEE-SGGG-GGGTTTTT---SGGGTT-EEEES----GGG-S---HHHHHHHH
T ss_pred             cEEEEECCCCCChhHHHHHHHHHhCCCEEEecceecccccccccCCCCHHHHcccceeeeccccccCCC-cCHHHHHHHH
Confidence            457899999999999999999999999999987543 2232111      1000     0123355666 4444455666


Q ss_pred             HHHHHccCCCCcceEEEeC
Q 030464          147 SKRLEDGYYRGEIGFILDG  165 (177)
Q Consensus       147 ~~~L~~~~~~~~~G~ILDG  165 (177)
                      ..++.+..  .+.|+||+|
T Consensus        81 i~~v~~~~--~~~~~IlEG   97 (233)
T PF01745_consen   81 ISEVNSYS--AHGGLILEG   97 (233)
T ss_dssp             HHHHHTTT--TSSEEEEEE
T ss_pred             HHHHHhcc--ccCceEEeC
Confidence            67777765  378999998

; GO: 0004161 dimethylallyltranstransferase activity, 0009058 biosynthetic process; PDB: 2ZE8_C 2ZE5_A 2ZE7_A 2ZE6_A.

>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+)

Probab=97.94  E-value=6.4e-06  Score=67.00  Aligned_cols=35  Identities=17%  Similarity=0.281  Sum_probs=32.1

Q ss_pred             EEEEcCCCCCchHHHHHHHHHh-CCCeeeCchhhhh
Q 030464           81 WAFIGSPRAKKHVYAEMLSKLL-EVPRISMSSIVRQ  115 (177)
Q Consensus        81 IlIiGpPGSGKSTlA~~LAk~l-gl~~Is~~dLlr~  115 (177)
                      |.|.|+|||||||+|+.|++.+ ++.+|++++....
T Consensus         2 i~i~G~sgsGKTtla~~l~~~~~~~~~i~~Ddf~~~   37 (187)
T cd02024           2 VGISGVTNSGKTTLAKLLQRILPNCCVIHQDDFFKP   37 (187)
T ss_pred             EEEECCCCCCHHHHHHHHHHHcCCCeEEccccccCC
Confidence            7889999999999999999998 7999999998764

This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.

>PF05729 NACHT: NACHT domain

Probab=97.94  E-value=1.9e-05  Score=59.86  Aligned_cols=23  Identities=22%  Similarity=0.235  Sum_probs=20.7

Q ss_pred             EEEEEcCCCCCchHHHHHHHHHh
Q 030464           80 HWAFIGSPRAKKHVYAEMLSKLL  102 (177)
Q Consensus        80 ~IlIiGpPGSGKSTlA~~LAk~l  102 (177)
                      .++|.|+||+||||+++.++..+
T Consensus         2 ~l~I~G~~G~GKStll~~~~~~~   24 (166)
T PF05729_consen    2 VLWISGEPGSGKSTLLRKLAQQL   24 (166)
T ss_pred             EEEEECCCCCChHHHHHHHHHHH
Confidence            47899999999999999998876

>PRK05480 uridine/cytidine kinase; Provisional

Probab=97.93  E-value=9.2e-06  Score=65.70  Aligned_cols=39  Identities=15%  Similarity=0.221  Sum_probs=33.2

Q ss_pred             CCCeEEEEEcCCCCCchHHHHHHHHHh---CCCeeeCchhhh
Q 030464           76 RRGVHWAFIGSPRAKKHVYAEMLSKLL---EVPRISMSSIVR  114 (177)
Q Consensus        76 ~~~~~IlIiGpPGSGKSTlA~~LAk~l---gl~~Is~~dLlr  114 (177)
                      .++..|.|.|++||||||+++.|++.+   .+.+++.++.+.
T Consensus         4 ~~~~iI~I~G~sGsGKTTl~~~l~~~l~~~~~~~i~~D~~~~   45 (209)
T PRK05480          4 KKPIIIGIAGGSGSGKTTVASTIYEELGDESIAVIPQDSYYK   45 (209)
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHhCCCceEEEeCCcccc
Confidence            478899999999999999999999998   355678877654

>CHL00181 cbbX CbbX; Provisional

Probab=97.92  E-value=2.3e-05  Score=67.38  Aligned_cols=27  Identities=33%  Similarity=0.573  Sum_probs=24.1

Q ss_pred             CCCeEEEEEcCCCCCchHHHHHHHHHh
Q 030464           76 RRGVHWAFIGSPRAKKHVYAEMLSKLL  102 (177)
Q Consensus        76 ~~~~~IlIiGpPGSGKSTlA~~LAk~l  102 (177)
                      ..+..++|.||||+|||++|+.+++.+
T Consensus        57 ~~~~~ill~G~pGtGKT~lAr~la~~~   83 (287)
T CHL00181         57 NPGLHMSFTGSPGTGKTTVALKMADIL   83 (287)
T ss_pred             CCCceEEEECCCCCCHHHHHHHHHHHH
Confidence            457789999999999999999998865

>PHA00729 NTP-binding motif containing protein

Probab=97.91  E-value=2.1e-05  Score=65.90  Aligned_cols=25  Identities=20%  Similarity=0.210  Sum_probs=23.3

Q ss_pred             eEEEEEcCCCCCchHHHHHHHHHhC
Q 030464           79 VHWAFIGSPRAKKHVYAEMLSKLLE  103 (177)
Q Consensus        79 ~~IlIiGpPGSGKSTlA~~LAk~lg  103 (177)
                      .+|+|+|+||+||||+|..|++.++
T Consensus        18 ~nIlItG~pGvGKT~LA~aLa~~l~   42 (226)
T PHA00729         18 VSAVIFGKQGSGKTTYALKVARDVF   42 (226)
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHHH
Confidence            5899999999999999999999875

>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []

Probab=97.91  E-value=4e-05  Score=61.89  Aligned_cols=41  Identities=20%  Similarity=0.186  Sum_probs=29.9

Q ss_pred             CCCeEEEEEcCCCCCchHHHHHHHHHh---CCCeeeCchhhhhcc
Q 030464           76 RRGVHWAFIGSPRAKKHVYAEMLSKLL---EVPRISMSSIVRQDL  117 (177)
Q Consensus        76 ~~~~~IlIiGpPGSGKSTlA~~LAk~l---gl~~Is~~dLlr~el  117 (177)
                      .+|..|++.|+|||||||++..+.+.+   ++.+|+.+++ +..+
T Consensus        13 ~~P~~~i~aG~~GsGKSt~~~~~~~~~~~~~~v~i~~D~~-r~~~   56 (199)
T PF06414_consen   13 EKPTLIIIAGQPGSGKSTLARQLLEEFGGGGIVVIDADEF-RQFH   56 (199)
T ss_dssp             SS-EEEEEES-TTSTTHHHHHHHHHHT-TT-SEEE-GGGG-GGGS
T ss_pred             cCCEEEEEeCCCCCCHHHHHHHhhhhccCCCeEEEehHHH-HHhc
Confidence            577778888999999999999999886   6788987654 4443

It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.

>TIGR01663 PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase

Probab=97.88  E-value=1.4e-05  Score=74.30  Aligned_cols=38  Identities=11%  Similarity=0.106  Sum_probs=34.0

Q ss_pred             cCCCeEEEEEcCCCCCchHHHHHHHHHhCCCeeeCchh
Q 030464           75 RRRGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSI  112 (177)
Q Consensus        75 ~~~~~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~dL  112 (177)
                      +.++..|++.|+|||||||+|+.+++..|+.+|+.+++
T Consensus       366 ~~~p~LVil~G~pGSGKST~A~~l~~~~g~~~vn~D~l  403 (526)
T TIGR01663       366 DAPCEMVIAVGFPGAGKSHFCKKFFQPAGYKHVNADTL  403 (526)
T ss_pred             CCCceEEEEECCCCCCHHHHHHHHHHHcCCeEECcHHH
Confidence            34677889999999999999999999999999999765

Note that the EC number for the kinase function is: 2.7.1.78

>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases

Probab=97.87  E-value=4.1e-05  Score=60.80  Aligned_cols=42  Identities=21%  Similarity=0.261  Sum_probs=32.7

Q ss_pred             CCeEEEEEcCCCCCchHHHHHHHHHh---C--CCeeeCchhhhhccCC
Q 030464           77 RGVHWAFIGSPRAKKHVYAEMLSKLL---E--VPRISMSSIVRQDLSP  119 (177)
Q Consensus        77 ~~~~IlIiGpPGSGKSTlA~~LAk~l---g--l~~Is~~dLlr~el~~  119 (177)
                      ++..|+|+|.|||||||+|+.|.+++   |  +.+++ +|.+|..+..
T Consensus         1 ~g~vIwltGlsGsGKtTlA~~L~~~L~~~g~~~~~LD-gD~lR~~l~~   47 (156)
T PF01583_consen    1 KGFVIWLTGLSGSGKTTLARALERRLFARGIKVYLLD-GDNLRHGLNA   47 (156)
T ss_dssp             S-EEEEEESSTTSSHHHHHHHHHHHHHHTTS-EEEEE-HHHHCTTTTT
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEec-CcchhhccCC
Confidence            56789999999999999999999987   3  44555 3677776654

Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....

>PRK12337 2-phosphoglycerate kinase; Provisional

Probab=97.84  E-value=7.7e-05  Score=68.52  Aligned_cols=42  Identities=31%  Similarity=0.324  Sum_probs=34.9

Q ss_pred             CCCeEEEEEcCCCCCchHHHHHHHHHhCCCeeeCchhhhhcc
Q 030464           76 RRGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDL  117 (177)
Q Consensus        76 ~~~~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~dLlr~el  117 (177)
                      .+|..|+|.|+||+||||+|..||+.+|+.++-..|.+|+.+
T Consensus       253 k~p~vil~~G~~G~GKSt~a~~LA~~lg~~~ii~tD~iR~~l  294 (475)
T PRK12337        253 PRPLHVLIGGVSGVGKSVLASALAYRLGITRIVSTDAVREVL  294 (475)
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHcCCcEEeehhHHHHHH
Confidence            368889999999999999999999999998654456666644

>PLN02840 tRNA dimethylallyltransferase

Probab=97.82  E-value=2.9e-05  Score=70.40  Aligned_cols=39  Identities=26%  Similarity=0.158  Sum_probs=34.3

Q ss_pred             cccCCCeEEEEEcCCCCCchHHHHHHHHHhCCCeeeCch
Q 030464           73 RERRRGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSS  111 (177)
Q Consensus        73 ~~~~~~~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~d  111 (177)
                      ....+++.|+|.||+||||||+|..|++.++..+|+.+.
T Consensus        16 ~~~~~~~vi~I~GptgsGKTtla~~La~~~~~~iis~Ds   54 (421)
T PLN02840         16 SKTKKEKVIVISGPTGAGKSRLALELAKRLNGEIISADS   54 (421)
T ss_pred             ccccCCeEEEEECCCCCCHHHHHHHHHHHCCCCeEeccc
Confidence            344566789999999999999999999999999999876

>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []

Probab=97.81  E-value=1.6e-05  Score=59.95  Aligned_cols=30  Identities=30%  Similarity=0.432  Sum_probs=26.1

Q ss_pred             EEEEEcCCCCCchHHHHHHHHHhCCCeeeC
Q 030464           80 HWAFIGSPRAKKHVYAEMLSKLLEVPRISM  109 (177)
Q Consensus        80 ~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~  109 (177)
                      .|+|+|+||+|||++++.+|+.++.+++.+
T Consensus         1 ~vlL~G~~G~GKt~l~~~la~~~~~~~~~i   30 (139)
T PF07728_consen    1 PVLLVGPPGTGKTTLARELAALLGRPVIRI   30 (139)
T ss_dssp             EEEEEESSSSSHHHHHHHHHHHHTCEEEEE
T ss_pred             CEEEECCCCCCHHHHHHHHHHHhhcceEEE
Confidence            379999999999999999999998776443

The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.

>PRK00091 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed

Probab=97.81  E-value=2.2e-05  Score=68.39  Aligned_cols=36  Identities=25%  Similarity=0.210  Sum_probs=32.9

Q ss_pred             CCeEEEEEcCCCCCchHHHHHHHHHhCCCeeeCchh
Q 030464           77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSI  112 (177)
Q Consensus        77 ~~~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~dL  112 (177)
                      ++..|+|+||+|||||++|..||+.++..+||.|++
T Consensus         3 ~~~~i~i~GptgsGKt~la~~la~~~~~~iis~Ds~   38 (307)
T PRK00091          3 KPKVIVIVGPTASGKTALAIELAKRLNGEIISADSM   38 (307)
T ss_pred             CceEEEEECCCCcCHHHHHHHHHHhCCCcEEecccc
Confidence            456789999999999999999999999999999874

>TIGR00235 udk uridine kinase

Probab=97.80  E-value=2.3e-05  Score=63.60  Aligned_cols=39  Identities=18%  Similarity=0.209  Sum_probs=32.3

Q ss_pred             cCCCeEEEEEcCCCCCchHHHHHHHHHhC---CCeeeCchhh
Q 030464           75 RRRGVHWAFIGSPRAKKHVYAEMLSKLLE---VPRISMSSIV  113 (177)
Q Consensus        75 ~~~~~~IlIiGpPGSGKSTlA~~LAk~lg---l~~Is~~dLl  113 (177)
                      +.++..|.|.|++||||||+++.|+..++   +.+++.++.+
T Consensus         3 ~~~g~vi~I~G~sGsGKSTl~~~l~~~l~~~~~~~i~~D~~~   44 (207)
T TIGR00235         3 KPKGIIIGIGGGSGSGKTTVARKIYEQLGKLEIVIISQDNYY   44 (207)
T ss_pred             CCCeEEEEEECCCCCCHHHHHHHHHHHhcccCCeEecccccc
Confidence            35677899999999999999999998875   5677777654

Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below

>PF13521 AAA_28: AAA domain; PDB: 1LW7_A

Probab=97.80  E-value=1.2e-05  Score=62.50  Aligned_cols=33  Identities=21%  Similarity=0.344  Sum_probs=23.6

Q ss_pred             EEEEEcCCCCCchHHHHHHHHHhCCCeeeCchhhhh
Q 030464           80 HWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQ  115 (177)
Q Consensus        80 ~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~dLlr~  115 (177)
                      +|+|+|+||+||||+++.|++. |++++  .+..|.
T Consensus         1 rI~i~G~~stGKTTL~~~L~~~-g~~~v--~E~ar~   33 (163)
T PF13521_consen    1 RIVITGGPSTGKTTLIEALAAR-GYPVV--PEYARE   33 (163)
T ss_dssp             -EEEE--TTSHHHHHHHHHHHH-T-EEE----TTHH
T ss_pred             CEEEECCCCCCHHHHHHHHHHc-CCeEE--eecHHH
Confidence            6999999999999999999998 88877  455544

>PRK00889 adenylylsulfate kinase; Provisional

Probab=97.80  E-value=2.1e-05  Score=61.80  Aligned_cols=36  Identities=31%  Similarity=0.354  Sum_probs=29.4

Q ss_pred             CCeEEEEEcCCCCCchHHHHHHHHHhC-----CCeeeCchh
Q 030464           77 RGVHWAFIGSPRAKKHVYAEMLSKLLE-----VPRISMSSI  112 (177)
Q Consensus        77 ~~~~IlIiGpPGSGKSTlA~~LAk~lg-----l~~Is~~dL  112 (177)
                      ++..|+|+|+|||||||+|+.|++.+.     +.+++.+.+
T Consensus         3 ~g~~i~~~G~~GsGKST~a~~la~~l~~~g~~v~~id~D~~   43 (175)
T PRK00889          3 RGVTVWFTGLSGAGKTTIARALAEKLREAGYPVEVLDGDAV   43 (175)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEcCccH
Confidence            456899999999999999999999872     566776543

>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN

Probab=97.78  E-value=4.2e-05  Score=64.59  Aligned_cols=32  Identities=16%  Similarity=0.199  Sum_probs=27.8

Q ss_pred             CeEEEEEcCCCCCchHHHHHHHHHhCCCeeeC
Q 030464           78 GVHWAFIGSPRAKKHVYAEMLSKLLEVPRISM  109 (177)
Q Consensus        78 ~~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~  109 (177)
                      +..|+|.|+||+|||++|+.|++.+|.+++.+
T Consensus        21 g~~vLL~G~~GtGKT~lA~~la~~lg~~~~~i   52 (262)
T TIGR02640        21 GYPVHLRGPAGTGKTTLAMHVARKRDRPVMLI   52 (262)
T ss_pred             CCeEEEEcCCCCCHHHHHHHHHHHhCCCEEEE
Confidence            45688999999999999999999999887644

Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).

>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit

Probab=97.77  E-value=2.7e-05  Score=70.82  Aligned_cols=37  Identities=24%  Similarity=0.260  Sum_probs=33.3

Q ss_pred             cCCCeEEEEEcCCCCCchHHHHHHHHHhCCCeeeCch
Q 030464           75 RRRGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSS  111 (177)
Q Consensus        75 ~~~~~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~d  111 (177)
                      ...+.+|+|+||||+|||++|+.||+.++++++.++.
T Consensus        44 e~~p~~ILLiGppG~GKT~lAraLA~~l~~~fi~vda   80 (441)
T TIGR00390        44 EVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEA   80 (441)
T ss_pred             ccCCceEEEECCCCCCHHHHHHHHHHHhCCeEEEeec
Confidence            3456789999999999999999999999999998874

This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.

>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX

Probab=97.77  E-value=8.4e-05  Score=63.70  Aligned_cols=26  Identities=27%  Similarity=0.485  Sum_probs=22.4

Q ss_pred             CCeEEEEEcCCCCCchHHHHHHHHHh
Q 030464           77 RGVHWAFIGSPRAKKHVYAEMLSKLL  102 (177)
Q Consensus        77 ~~~~IlIiGpPGSGKSTlA~~LAk~l  102 (177)
                      .+..++|.||||+|||++|+.+++.+
T Consensus        57 ~~~~vll~G~pGTGKT~lA~~ia~~l   82 (284)
T TIGR02880        57 PTLHMSFTGNPGTGKTTVALRMAQIL   82 (284)
T ss_pred             CCceEEEEcCCCCCHHHHHHHHHHHH
Confidence            35579999999999999998888765

Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.

>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]

Probab=97.72  E-value=5.5e-05  Score=61.72  Aligned_cols=45  Identities=22%  Similarity=0.220  Sum_probs=35.4

Q ss_pred             cCCCeEEEEEcCCCCCchHHHHHHHHHh---CCC-eeeCchhhhhccCC
Q 030464           75 RRRGVHWAFIGSPRAKKHVYAEMLSKLL---EVP-RISMSSIVRQDLSP  119 (177)
Q Consensus        75 ~~~~~~IlIiGpPGSGKSTlA~~LAk~l---gl~-~Is~~dLlr~el~~  119 (177)
                      ..++..|+|+|.+||||||+|.+|++++   |+. ++=-||-+|.-+..
T Consensus        20 ~~~~~viW~TGLSGsGKSTiA~ale~~L~~~G~~~y~LDGDnvR~gL~~   68 (197)
T COG0529          20 GQKGAVIWFTGLSGSGKSTIANALEEKLFAKGYHVYLLDGDNVRHGLNR   68 (197)
T ss_pred             CCCCeEEEeecCCCCCHHHHHHHHHHHHHHcCCeEEEecChhHhhcccC
Confidence            4578899999999999999999999986   433 23336888887764

>COG2019 AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism]

Probab=97.72  E-value=6.6e-05  Score=60.80  Aligned_cols=38  Identities=13%  Similarity=0.130  Sum_probs=33.9

Q ss_pred             CeEEEEEcCCCCCchHHHHHHHHHh-CCCeeeCchhhhh
Q 030464           78 GVHWAFIGSPRAKKHVYAEMLSKLL-EVPRISMSSIVRQ  115 (177)
Q Consensus        78 ~~~IlIiGpPGSGKSTlA~~LAk~l-gl~~Is~~dLlr~  115 (177)
                      +++++++|-||+||||+++...+.+ ++..++.|+++=+
T Consensus         4 ~kvvvitGVpGvGKTTVl~~~~~~l~~~~ivNyG~~Mle   42 (189)
T COG2019           4 RKVVVITGVPGVGKTTVLKIALKELVKHKIVNYGDLMLE   42 (189)
T ss_pred             ceEEEEEcCCCCChHHHHHHHHHHHhhceeeeHhHHHHH
Confidence            5789999999999999999999988 8888999997654

>PRK09183 transposase/IS protein; Provisional

Probab=97.72  E-value=0.00015  Score=61.47  Aligned_cols=42  Identities=14%  Similarity=0.063  Sum_probs=31.1

Q ss_pred             cccCCCeEEEEEcCCCCCchHHHHHHHHHh---C--CCeeeCchhhh
Q 030464           73 RERRRGVHWAFIGSPRAKKHVYAEMLSKLL---E--VPRISMSSIVR  114 (177)
Q Consensus        73 ~~~~~~~~IlIiGpPGSGKSTlA~~LAk~l---g--l~~Is~~dLlr  114 (177)
                      .+..++.+++|+||||+|||+++..|+...   |  +.+++..+++.
T Consensus        97 ~~i~~~~~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~~~~~l~~  143 (259)
T PRK09183         97 SFIERNENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFTTAADLLL  143 (259)
T ss_pred             CchhcCCeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeHHHHHH
Confidence            345567789999999999999999996543   3  34556666653

>PRK15453 phosphoribulokinase; Provisional

Probab=97.70  E-value=7.5e-05  Score=64.73  Aligned_cols=39  Identities=18%  Similarity=0.169  Sum_probs=31.6

Q ss_pred             CCCeEEEEEcCCCCCchHHHHHHHHHhC-----CCeeeCchhhh
Q 030464           76 RRGVHWAFIGSPRAKKHVYAEMLSKLLE-----VPRISMSSIVR  114 (177)
Q Consensus        76 ~~~~~IlIiGpPGSGKSTlA~~LAk~lg-----l~~Is~~dLlr  114 (177)
                      .+++.|.|.|.|||||||+|+.|++.++     ..+++.++..+
T Consensus         3 ~k~piI~ItG~SGsGKTTva~~l~~if~~~~~~~~vi~~D~yh~   46 (290)
T PRK15453          3 AKHPIIAVTGSSGAGTTTVKRAFEKIFRRENINAAVVEGDSFHR   46 (290)
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHHhhcCCCeEEEecccccc
Confidence            4678899999999999999999998774     45677666544

>TIGR03263 guanyl_kin guanylate kinase

Probab=97.69  E-value=2.6e-05  Score=61.20  Aligned_cols=32  Identities=16%  Similarity=0.089  Sum_probs=26.3

Q ss_pred             eEEEEEcCCCCCchHHHHHHHHHhCCCeeeCc
Q 030464           79 VHWAFIGSPRAKKHVYAEMLSKLLEVPRISMS  110 (177)
Q Consensus        79 ~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~  110 (177)
                      ..|+|+||+||||||+++.|++.+...++...
T Consensus         2 ~ii~l~G~~GsGKsTl~~~L~~~~~~~~~~~~   33 (180)
T TIGR03263         2 LLIVISGPSGVGKSTLVKALLEEDPNLKFSIS   33 (180)
T ss_pred             cEEEEECCCCCCHHHHHHHHHccCcccccccc
Confidence            46899999999999999999998755555543

Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.

>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2

Probab=97.67  E-value=3e-05  Score=62.08  Aligned_cols=36  Identities=22%  Similarity=0.203  Sum_probs=31.4

Q ss_pred             EEEEEcCCCCCchHHHHHHHHHh-----CCCeeeCchhhhh
Q 030464           80 HWAFIGSPRAKKHVYAEMLSKLL-----EVPRISMSSIVRQ  115 (177)
Q Consensus        80 ~IlIiGpPGSGKSTlA~~LAk~l-----gl~~Is~~dLlr~  115 (177)
                      .|.|.|+|||||||+|+.|++.+     ++.+|++++..+.
T Consensus         1 ii~i~G~sgsGKttla~~l~~~l~~~~~~~~~i~~Ddf~~~   41 (179)
T cd02028           1 VVGIAGPSGSGKTTFAKKLSNQLRVNGIGPVVISLDDYYVP   41 (179)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEehhhcccC
Confidence            37899999999999999999986     4679999998874

7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).

>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated

Probab=97.67  E-value=0.00017  Score=67.65  Aligned_cols=42  Identities=29%  Similarity=0.292  Sum_probs=34.6

Q ss_pred             CCeEEEEEcCCCCCchHHHHHHHHHhCC------CeeeCchhhhhccCC
Q 030464           77 RGVHWAFIGSPRAKKHVYAEMLSKLLEV------PRISMSSIVRQDLSP  119 (177)
Q Consensus        77 ~~~~IlIiGpPGSGKSTlA~~LAk~lgl------~~Is~~dLlr~el~~  119 (177)
                      ++..|+|+|.|||||||+|+.|++.++.      .+++. |.+++.+..
T Consensus       391 ~g~~Ivl~Gl~GSGKSTia~~La~~L~~~~g~~~~~lD~-D~vr~~l~g  438 (568)
T PRK05537        391 QGFTVFFTGLSGAGKSTIAKALMVKLMEMRGRPVTLLDG-DVVRKHLSS  438 (568)
T ss_pred             CCeEEEEECCCCChHHHHHHHHHHHhhhccCceEEEeCC-cHHHHhccC
Confidence            5568999999999999999999999985      77775 566766653

>PRK14738 gmk guanylate kinase; Provisional

Probab=97.66  E-value=4.9e-05  Score=61.96  Aligned_cols=34  Identities=6%  Similarity=-0.082  Sum_probs=28.6

Q ss_pred             cCccCcccCCCeEEEEEcCCCCCchHHHHHHHHH
Q 030464           68 PDTEGRERRRGVHWAFIGSPRAKKHVYAEMLSKL  101 (177)
Q Consensus        68 ~~~~~~~~~~~~~IlIiGpPGSGKSTlA~~LAk~  101 (177)
                      ..+..+.|.++..|+|+||+||||||+++.|.+.
T Consensus         3 ~~~~~~~~~~~~~ivi~GpsG~GK~tl~~~L~~~   36 (206)
T PRK14738          3 NPWLFNKPAKPLLVVISGPSGVGKDAVLARMRER   36 (206)
T ss_pred             CccccCCCCCCeEEEEECcCCCCHHHHHHHHHhc
Confidence            3455667778889999999999999999999764

>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional

Probab=97.66  E-value=5.1e-05  Score=69.06  Aligned_cols=36  Identities=25%  Similarity=0.264  Sum_probs=32.3

Q ss_pred             CCCeEEEEEcCCCCCchHHHHHHHHHhCCCeeeCch
Q 030464           76 RRGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSS  111 (177)
Q Consensus        76 ~~~~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~d  111 (177)
                      ..+.+|+|+||||+|||++|+.||+.++++++.++.
T Consensus        48 ~~~~~ILliGp~G~GKT~LAr~LAk~l~~~fi~vD~   83 (443)
T PRK05201         48 VTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEA   83 (443)
T ss_pred             cCCceEEEECCCCCCHHHHHHHHHHHhCChheeecc
Confidence            346789999999999999999999999999888864

>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2

Probab=97.64  E-value=3.8e-05  Score=61.49  Aligned_cols=34  Identities=26%  Similarity=0.246  Sum_probs=29.7

Q ss_pred             EEEEcCCCCCchHHHHHHHHHh---CCCeeeCchhhh
Q 030464           81 WAFIGSPRAKKHVYAEMLSKLL---EVPRISMSSIVR  114 (177)
Q Consensus        81 IlIiGpPGSGKSTlA~~LAk~l---gl~~Is~~dLlr  114 (177)
                      |.|.|++||||||+++.|+..+   ++.++++++...
T Consensus         2 igi~G~~GsGKSTl~~~l~~~l~~~~~~v~~~D~~~~   38 (198)
T cd02023           2 IGIAGGSGSGKTTVAEEIIEQLGNPKVVIISQDSYYK   38 (198)
T ss_pred             EEEECCCCCCHHHHHHHHHHHhCCCCeEEEEeccccc
Confidence            7899999999999999999987   477888887664

7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.

>PRK07667 uridine kinase; Provisional

Probab=97.64  E-value=5.3e-05  Score=61.09  Aligned_cols=39  Identities=10%  Similarity=0.164  Sum_probs=32.8

Q ss_pred             CCeEEEEEcCCCCCchHHHHHHHHHhC-----CCeeeCchhhhh
Q 030464           77 RGVHWAFIGSPRAKKHVYAEMLSKLLE-----VPRISMSSIVRQ  115 (177)
Q Consensus        77 ~~~~IlIiGpPGSGKSTlA~~LAk~lg-----l~~Is~~dLlr~  115 (177)
                      ....|.|.|+|||||||+|+.|++.++     +..+++++.+..
T Consensus        16 ~~~iIgI~G~~gsGKStla~~L~~~l~~~~~~~~~i~~Dd~~~~   59 (193)
T PRK07667         16 NRFILGIDGLSRSGKTTFVANLKENMKQEGIPFHIFHIDDYIVE   59 (193)
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEEcCcccch
Confidence            447889999999999999999999763     458999987654

>PTZ00301 uridine kinase; Provisional

Probab=97.63  E-value=4.1e-05  Score=63.25  Aligned_cols=39  Identities=13%  Similarity=0.046  Sum_probs=30.5

Q ss_pred             CCeEEEEEcCCCCCchHHHHHHHHHhC-------CCeeeCchhhhh
Q 030464           77 RGVHWAFIGSPRAKKHVYAEMLSKLLE-------VPRISMSSIVRQ  115 (177)
Q Consensus        77 ~~~~IlIiGpPGSGKSTlA~~LAk~lg-------l~~Is~~dLlr~  115 (177)
                      +-+.|.|.|+|||||||+|+.|++.++       +..+++++..+.
T Consensus         2 ~~~iIgIaG~SgSGKTTla~~l~~~l~~~~~~~~~~vi~~D~yy~~   47 (210)
T PTZ00301          2 PCTVIGISGASGSGKSSLSTNIVSELMAHCGPVSIGVICEDFYYRD   47 (210)
T ss_pred             CCEEEEEECCCcCCHHHHHHHHHHHHHhhcCCCeEEEeCCCCCccC
Confidence            346788999999999999999988762       346777776654

>PRK03846 adenylylsulfate kinase; Provisional

Probab=97.63  E-value=3.9e-05  Score=61.88  Aligned_cols=33  Identities=27%  Similarity=0.283  Sum_probs=27.7

Q ss_pred             ccCcccCCCeEEEEEcCCCCCchHHHHHHHHHh
Q 030464           70 TEGRERRRGVHWAFIGSPRAKKHVYAEMLSKLL  102 (177)
Q Consensus        70 ~~~~~~~~~~~IlIiGpPGSGKSTlA~~LAk~l  102 (177)
                      -+...+.++..|+|+|++||||||+++.|++.+
T Consensus        16 ~~~~~~~~~~~i~i~G~~GsGKSTla~~l~~~l   48 (198)
T PRK03846         16 REQLHGHKGVVLWFTGLSGSGKSTVAGALEEAL   48 (198)
T ss_pred             HHHhcCCCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence            333445688899999999999999999999976

>PRK09825 idnK D-gluconate kinase; Provisional

Probab=97.62  E-value=6.3e-05  Score=60.16  Aligned_cols=35  Identities=14%  Similarity=0.301  Sum_probs=30.8

Q ss_pred             CeEEEEEcCCCCCchHHHHHHHHHhCCCeeeCchh
Q 030464           78 GVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSI  112 (177)
Q Consensus        78 ~~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~dL  112 (177)
                      +-.++|+|++||||||+++.|+..++..+++-+++
T Consensus         3 ge~i~l~G~sGsGKSTl~~~la~~l~~~~i~gd~~   37 (176)
T PRK09825          3 GESYILMGVSGSGKSLIGSKIAALFSAKFIDGDDL   37 (176)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHhcCCEEECCccc
Confidence            44689999999999999999999999988887654

>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold

Probab=97.61  E-value=7.5e-05  Score=54.22  Aligned_cols=32  Identities=19%  Similarity=0.300  Sum_probs=26.1

Q ss_pred             CeEEEEEcCCCCCchHHHHHHHHHh---CCCeeeC
Q 030464           78 GVHWAFIGSPRAKKHVYAEMLSKLL---EVPRISM  109 (177)
Q Consensus        78 ~~~IlIiGpPGSGKSTlA~~LAk~l---gl~~Is~  109 (177)
                      ...++|+|+||+|||++++.+++.+   +..++.+
T Consensus        19 ~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~   53 (151)
T cd00009          19 PKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYL   53 (151)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEE
Confidence            4568999999999999999999987   5554444

The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.

>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2

Probab=97.61  E-value=5.1e-05  Score=60.91  Aligned_cols=24  Identities=21%  Similarity=0.310  Sum_probs=22.3

Q ss_pred             EEEEEcCCCCCchHHHHHHHHHhC
Q 030464           80 HWAFIGSPRAKKHVYAEMLSKLLE  103 (177)
Q Consensus        80 ~IlIiGpPGSGKSTlA~~LAk~lg  103 (177)
                      .|.|.|++||||||+|++|++.++
T Consensus         1 IIgI~G~sgSGKTTla~~L~~~L~   24 (194)
T PF00485_consen    1 IIGIAGPSGSGKTTLAKRLAQILN   24 (194)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHHT
T ss_pred             CEEEECCCCCCHHHHHHHHHHHhC
Confidence            478999999999999999999986

7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....

>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN

Probab=97.61  E-value=5.3e-05  Score=59.56  Aligned_cols=26  Identities=15%  Similarity=0.061  Sum_probs=23.1

Q ss_pred             eEEEEEcCCCCCchHHHHHHHHHhCC
Q 030464           79 VHWAFIGSPRAKKHVYAEMLSKLLEV  104 (177)
Q Consensus        79 ~~IlIiGpPGSGKSTlA~~LAk~lgl  104 (177)
                      ..|+|+|+|||||||+++.|+..++.
T Consensus         2 ~~~~i~G~sGsGKttl~~~l~~~~~~   27 (179)
T TIGR02322         2 RLIYVVGPSGAGKDTLLDYARARLAG   27 (179)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHcCc
Confidence            36899999999999999999998754

Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.

>PRK10078 ribose 1,5-bisphosphokinase; Provisional

Probab=97.61  E-value=4.8e-05  Score=60.71  Aligned_cols=36  Identities=8%  Similarity=0.050  Sum_probs=28.7

Q ss_pred             eEEEEEcCCCCCchHHHHHHHHHhCCCeeeCchhhh
Q 030464           79 VHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVR  114 (177)
Q Consensus        79 ~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~dLlr  114 (177)
                      ..|+|+||+||||||+++.|+..++..++..+..+.
T Consensus         3 ~~i~l~G~sGsGKsTl~~~l~~~~~~~~~~~~~~~~   38 (186)
T PRK10078          3 KLIWLMGPSGSGKDSLLAALRQREQTQLLVAHRYIT   38 (186)
T ss_pred             cEEEEECCCCCCHHHHHHHHhccCCCeEEEcCEECC
Confidence            468999999999999999999988766555444433

>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=97.60  E-value=0.0001  Score=65.39  Aligned_cols=29  Identities=17%  Similarity=0.195  Sum_probs=25.3

Q ss_pred             eEEEEEcCCCCCchHHHHHHHHHhCCCee
Q 030464           79 VHWAFIGSPRAKKHVYAEMLSKLLEVPRI  107 (177)
Q Consensus        79 ~~IlIiGpPGSGKSTlA~~LAk~lgl~~I  107 (177)
                      ..|++.||||.|||++|+.||+++.+...
T Consensus       178 RliLlhGPPGTGKTSLCKaLaQkLSIR~~  206 (423)
T KOG0744|consen  178 RLILLHGPPGTGKTSLCKALAQKLSIRTN  206 (423)
T ss_pred             eEEEEeCCCCCChhHHHHHHHHhheeeec
Confidence            45789999999999999999999877633

>TIGR00174 miaA tRNA isopentenyltransferase (miaA)

Probab=97.59  E-value=5.9e-05  Score=65.27  Aligned_cols=31  Identities=29%  Similarity=0.259  Sum_probs=29.8

Q ss_pred             EEEEcCCCCCchHHHHHHHHHhCCCeeeCch
Q 030464           81 WAFIGSPRAKKHVYAEMLSKLLEVPRISMSS  111 (177)
Q Consensus        81 IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~d  111 (177)
                      |+|+||+|||||++|..|++.++..+||+++
T Consensus         2 i~i~G~t~~GKs~la~~l~~~~~~~iis~Ds   32 (287)
T TIGR00174         2 IFIMGPTAVGKSQLAIQLAKKLNAEIISVDS   32 (287)
T ss_pred             EEEECCCCCCHHHHHHHHHHhCCCcEEEech
Confidence            7899999999999999999999999999987

Catalyzes the first step in the modification of an adenosine near the anticodon to 2-methylthio-N6-isopentyladenosine.

>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS)

Probab=97.59  E-value=8.2e-05  Score=57.68  Aligned_cols=36  Identities=25%  Similarity=0.272  Sum_probs=27.5

Q ss_pred             EEEEcCCCCCchHHHHHHHHHh---CCC--eeeCchhhhhcc
Q 030464           81 WAFIGSPRAKKHVYAEMLSKLL---EVP--RISMSSIVRQDL  117 (177)
Q Consensus        81 IlIiGpPGSGKSTlA~~LAk~l---gl~--~Is~~dLlr~el  117 (177)
                      |+|.|.|||||||+|+.|++.+   +..  +++ ++-+++.+
T Consensus         2 i~i~G~~GsGKSTla~~L~~~l~~~g~~~~~i~-~d~~r~~l   42 (149)
T cd02027           2 IWLTGLSGSGKSTIARALEEKLFQRGRPVYVLD-GDNVRHGL   42 (149)
T ss_pred             EEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEEc-CHHHHHhh
Confidence            7899999999999999999988   644  344 35555433

The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.

>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]

Probab=97.58  E-value=0.00026  Score=59.93  Aligned_cols=42  Identities=21%  Similarity=0.289  Sum_probs=34.7

Q ss_pred             CCeEEEEEcCCCCCchHHHHHHHHHh---C--CCeeeCchhhhhccC
Q 030464           77 RGVHWAFIGSPRAKKHVYAEMLSKLL---E--VPRISMSSIVRQDLS  118 (177)
Q Consensus        77 ~~~~IlIiGpPGSGKSTlA~~LAk~l---g--l~~Is~~dLlr~el~  118 (177)
                      ++..++|.|+||+|||++|.+|+..+   |  +.++++.+++.+...
T Consensus       104 ~~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~~el~~~Lk~  150 (254)
T COG1484         104 RGENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITAPDLLSKLKA  150 (254)
T ss_pred             cCCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHH
Confidence            67789999999999999999998764   3  457888899887544

>PF01202 SKI: Shikimate kinase; InterPro: IPR000623 Shikimate kinase (2

Probab=97.58  E-value=3.8e-05  Score=59.91  Aligned_cols=32  Identities=19%  Similarity=0.255  Sum_probs=29.3

Q ss_pred             CCCCchHHHHHHHHHhCCCeeeCchhhhhccC
Q 030464           87 PRAKKHVYAEMLSKLLEVPRISMSSIVRQDLS  118 (177)
Q Consensus        87 PGSGKSTlA~~LAk~lgl~~Is~~dLlr~el~  118 (177)
                      |||||||+++.||+.+|++++++++++.+...
T Consensus         1 ~GsGKStvg~~lA~~L~~~fiD~D~~i~~~~g   32 (158)
T PF01202_consen    1 MGSGKSTVGKLLAKRLGRPFIDLDDEIEERTG   32 (158)
T ss_dssp             TTSSHHHHHHHHHHHHTSEEEEHHHHHHHHHT
T ss_pred             CCCcHHHHHHHHHHHhCCCccccCHHHHHHhC
Confidence            79999999999999999999999999877543

7.1.71 from EC) catalyses the fifth step in the biosynthesis of aromatic amino acids from chorismate (the so-called shikimate pathway) []. The enzyme catalyses the following reaction: ATP + shikimate = ADP + shikimate-3-phosphate The protein is found in bacteria (gene aroK or aroL), plants and fungi (where it is part of a multifunctional enzyme that catalyses five consecutive steps in this pathway). In 1994, the 3D structure of shikimate kinase was predicted to be very close to that of adenylate kinase, suggesting a functional similarity as well as an evolutionary relationship []. This prediction has since been confirmed experimentally. The protein is reported to possess an alpha/beta fold, consisting of a central sheet of five parallel beta-strands flanked by alpha-helices. Such a topology is very similar to that of adenylate kinase [].; GO: 0004765 shikimate kinase activity, 0005524 ATP binding; PDB: 3VAA_C 1KO8_B 1KO4_B 1KO1_A 1KOF_A 1KNQ_A 1KO5_A 1KAG_A 2PT5_D 1SHK_A ....

>COG3265 GntK Gluconate kinase [Carbohydrate transport and metabolism]

Probab=97.58  E-value=0.00017  Score=57.35  Aligned_cols=31  Identities=16%  Similarity=0.162  Sum_probs=28.0

Q ss_pred             EcCCCCCchHHHHHHHHHhCCCeeeCchhhh
Q 030464           84 IGSPRAKKHVYAEMLSKLLEVPRISMSSIVR  114 (177)
Q Consensus        84 iGpPGSGKSTlA~~LAk~lgl~~Is~~dLlr  114 (177)
                      +|..||||||+++.||+++|..+|+=++|--
T Consensus         1 MGVsG~GKStvg~~lA~~lg~~fidGDdlHp   31 (161)
T COG3265           1 MGVSGSGKSTVGSALAERLGAKFIDGDDLHP   31 (161)
T ss_pred             CCCCccCHHHHHHHHHHHcCCceecccccCC
Confidence            5899999999999999999999999877643

>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif

Probab=97.58  E-value=8.4e-05  Score=59.64  Aligned_cols=46  Identities=17%  Similarity=0.127  Sum_probs=33.3

Q ss_pred             CcccCCCeEEEEEcCCCCCchHHHHHHHHH-----hCCCeeeCchhhhhcc
Q 030464           72 GRERRRGVHWAFIGSPRAKKHVYAEMLSKL-----LEVPRISMSSIVRQDL  117 (177)
Q Consensus        72 ~~~~~~~~~IlIiGpPGSGKSTlA~~LAk~-----lgl~~Is~~dLlr~el  117 (177)
                      ..+..++..++|.|+||+|||++|..+++.     +.+.++++.+|+....
T Consensus        41 ~~~~~~~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~~~L~~~l~   91 (178)
T PF01695_consen   41 LEFIENGENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFITASDLLDELK   91 (178)
T ss_dssp             H-S-SC--EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHHHH
T ss_pred             CCCcccCeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEeecCceecccc
Confidence            344557788999999999999999999864     3456888888887643

They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.

>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair

Probab=97.58  E-value=6.1e-05  Score=63.40  Aligned_cols=32  Identities=25%  Similarity=0.233  Sum_probs=25.2

Q ss_pred             CeEEEEEcCCCCCchHHHHHHHHHhCCCeeeC
Q 030464           78 GVHWAFIGSPRAKKHVYAEMLSKLLEVPRISM  109 (177)
Q Consensus        78 ~~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~  109 (177)
                      ...++|.||||+||||+|..||+.++..+..+
T Consensus        50 l~h~lf~GPPG~GKTTLA~IIA~e~~~~~~~~   81 (233)
T PF05496_consen   50 LDHMLFYGPPGLGKTTLARIIANELGVNFKIT   81 (233)
T ss_dssp             --EEEEESSTTSSHHHHHHHHHHHCT--EEEE
T ss_pred             cceEEEECCCccchhHHHHHHHhccCCCeEec
Confidence            35799999999999999999999999875443

Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.

>PRK05439 pantothenate kinase; Provisional

Probab=97.57  E-value=6.6e-05  Score=65.65  Aligned_cols=39  Identities=21%  Similarity=0.229  Sum_probs=33.0

Q ss_pred             CCCeEEEEEcCCCCCchHHHHHHHHHhC-------CCeeeCchhhh
Q 030464           76 RRGVHWAFIGSPRAKKHVYAEMLSKLLE-------VPRISMSSIVR  114 (177)
Q Consensus        76 ~~~~~IlIiGpPGSGKSTlA~~LAk~lg-------l~~Is~~dLlr  114 (177)
                      .++..|.|.|+|||||||+|+.|++.++       +.+|++++.+.
T Consensus        84 ~~~~iIgIaG~~gsGKSTla~~L~~~l~~~~~~~~v~vi~~DdFy~  129 (311)
T PRK05439         84 KVPFIIGIAGSVAVGKSTTARLLQALLSRWPEHPKVELVTTDGFLY  129 (311)
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHHHhhCCCCceEEEecccccc
Confidence            5678899999999999999999998653       56899988764

>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH

Probab=97.56  E-value=0.00028  Score=64.69  Aligned_cols=34  Identities=24%  Similarity=0.272  Sum_probs=29.9

Q ss_pred             CCeEEEEEcCCCCCchHHHHHHHHHhCCCeeeCc
Q 030464           77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMS  110 (177)
Q Consensus        77 ~~~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~  110 (177)
                      .+..++|.||||+|||++|+.||...+++++.+.
T Consensus        87 ~~~giLL~GppGtGKT~la~alA~~~~~~~~~i~  120 (495)
T TIGR01241        87 IPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSIS  120 (495)
T ss_pred             CCCcEEEECCCCCCHHHHHHHHHHHcCCCeeecc
Confidence            3456999999999999999999999999887764

HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.

>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU)

Probab=97.53  E-value=9.9e-05  Score=58.96  Aligned_cols=30  Identities=30%  Similarity=0.349  Sum_probs=24.3

Q ss_pred             EEEEcCCCCCchHHHHHHHHHhC--CCeeeCc
Q 030464           81 WAFIGSPRAKKHVYAEMLSKLLE--VPRISMS  110 (177)
Q Consensus        81 IlIiGpPGSGKSTlA~~LAk~lg--l~~Is~~  110 (177)
                      ++|+|+||||||++|..++...+  +.++...
T Consensus         2 ~li~G~~~sGKS~~a~~~~~~~~~~~~y~at~   33 (169)
T cd00544           2 ILVTGGARSGKSRFAERLAAELGGPVTYIATA   33 (169)
T ss_pred             EEEECCCCCCHHHHHHHHHHhcCCCeEEEEcc
Confidence            78999999999999999998765  3455444

CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.

>PRK08181 transposase; Validated

Probab=97.52  E-value=7.8e-05  Score=63.83  Aligned_cols=43  Identities=19%  Similarity=0.212  Sum_probs=34.1

Q ss_pred             ccCCCeEEEEEcCCCCCchHHHHHHHHHh---C--CCeeeCchhhhhc
Q 030464           74 ERRRGVHWAFIGSPRAKKHVYAEMLSKLL---E--VPRISMSSIVRQD  116 (177)
Q Consensus        74 ~~~~~~~IlIiGpPGSGKSTlA~~LAk~l---g--l~~Is~~dLlr~e  116 (177)
                      +..+..+++|+||||+|||++|..++...   |  +.++++.+++...
T Consensus       102 ~~~~~~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~~~~L~~~l  149 (269)
T PRK08181        102 WLAKGANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTRTTDLVQKL  149 (269)
T ss_pred             HHhcCceEEEEecCCCcHHHHHHHHHHHHHHcCCceeeeeHHHHHHHH
Confidence            44566789999999999999999998632   3  6678888887754

>PLN02748 tRNA dimethylallyltransferase

Probab=97.52  E-value=8.1e-05  Score=68.41  Aligned_cols=36  Identities=19%  Similarity=0.147  Sum_probs=33.0

Q ss_pred             CCCeEEEEEcCCCCCchHHHHHHHHHhCCCeeeCch
Q 030464           76 RRGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSS  111 (177)
Q Consensus        76 ~~~~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~d  111 (177)
                      .++..|+|+||+|||||++|..||+.++..+|+.+.
T Consensus        20 ~~~~~i~i~GptgsGKs~la~~la~~~~~eii~~Ds   55 (468)
T PLN02748         20 GKAKVVVVMGPTGSGKSKLAVDLASHFPVEIINADS   55 (468)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHHhcCeeEEcCch
Confidence            456689999999999999999999999999999985

>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []

Probab=97.52  E-value=0.00028  Score=60.40  Aligned_cols=35  Identities=34%  Similarity=0.256  Sum_probs=23.5

Q ss_pred             eEEEEEcCCCCCchHHHHHHHHHh-----CCCeeeCchhh
Q 030464           79 VHWAFIGSPRAKKHVYAEMLSKLL-----EVPRISMSSIV  113 (177)
Q Consensus        79 ~~IlIiGpPGSGKSTlA~~LAk~l-----gl~~Is~~dLl  113 (177)
                      +-|+|+|.|||||||+|+.|++.+     .+.+++-+++.
T Consensus         2 pLiil~G~P~SGKTt~a~~L~~~~~~~~~~v~~i~~~~~~   41 (270)
T PF08433_consen    2 PLIILCGLPCSGKTTRAKELKKYLEEKGKEVVIISDDSLG   41 (270)
T ss_dssp             -EEEEE--TTSSHHHHHHHHHHHHHHTT--EEEE-THHHH
T ss_pred             EEEEEEcCCCCcHHHHHHHHHHHHHhcCCEEEEEcccccc
Confidence            468999999999999999998864     44566644433

The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.

>PRK12377 putative replication protein; Provisional

Probab=97.51  E-value=0.00047  Score=58.41  Aligned_cols=37  Identities=19%  Similarity=0.397  Sum_probs=30.0

Q ss_pred             eEEEEEcCCCCCchHHHHHHHHHh---C--CCeeeCchhhhh
Q 030464           79 VHWAFIGSPRAKKHVYAEMLSKLL---E--VPRISMSSIVRQ  115 (177)
Q Consensus        79 ~~IlIiGpPGSGKSTlA~~LAk~l---g--l~~Is~~dLlr~  115 (177)
                      ..++|.|+||+|||++|..|+..+   |  +.++++.+++..
T Consensus       102 ~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i~~~~l~~~  143 (248)
T PRK12377        102 TNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVTVPDVMSR  143 (248)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEHHHHHHH
Confidence            468999999999999999999876   3  347777777764

>PRK00300 gmk guanylate kinase; Provisional

Probab=97.49  E-value=0.00011  Score=58.83  Aligned_cols=27  Identities=22%  Similarity=0.217  Sum_probs=24.5

Q ss_pred             CCeEEEEEcCCCCCchHHHHHHHHHhC
Q 030464           77 RGVHWAFIGSPRAKKHVYAEMLSKLLE  103 (177)
Q Consensus        77 ~~~~IlIiGpPGSGKSTlA~~LAk~lg  103 (177)
                      ++..|+|+||+||||||+++.|++.+.
T Consensus         4 ~g~~i~i~G~sGsGKstl~~~l~~~~~   30 (205)
T PRK00300          4 RGLLIVLSGPSGAGKSTLVKALLERDP   30 (205)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhhCc
Confidence            566899999999999999999999875

>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic

Probab=97.48  E-value=0.00012  Score=64.87  Aligned_cols=35  Identities=31%  Similarity=0.401  Sum_probs=29.9

Q ss_pred             EEEEcCCCCCchHHHHHHHHHhC------CCeeeCchhhhh
Q 030464           81 WAFIGSPRAKKHVYAEMLSKLLE------VPRISMSSIVRQ  115 (177)
Q Consensus        81 IlIiGpPGSGKSTlA~~LAk~lg------l~~Is~~dLlr~  115 (177)
                      ++|+|+||+||||+++.|++.+.      +.+++++|++..
T Consensus         2 ~~l~Gl~GaGKST~~~~l~~~l~~~~g~~v~~~~~Dd~i~~   42 (340)
T TIGR03575         2 CVLCGLPAAGKSTLARSLSATLRRERGWAVAVITYDDIIPE   42 (340)
T ss_pred             eEEECCCCCCHHHHHHHHHHHHHhccCCeEEEEcccccccc
Confidence            68999999999999999987765      449999998843

Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.

>PRK11545 gntK gluconate kinase 1; Provisional

Probab=97.47  E-value=7.3e-05  Score=58.88  Aligned_cols=29  Identities=14%  Similarity=0.162  Sum_probs=26.4

Q ss_pred             EcCCCCCchHHHHHHHHHhCCCeeeCchh
Q 030464           84 IGSPRAKKHVYAEMLSKLLEVPRISMSSI  112 (177)
Q Consensus        84 iGpPGSGKSTlA~~LAk~lgl~~Is~~dL  112 (177)
                      +|+|||||||+++.|++.+|..+++.+.+
T Consensus         1 ~G~sGsGKSTla~~la~~l~~~~~~~d~~   29 (163)
T PRK11545          1 MGVSGSGKSAVASEVAHQLHAAFLDGDFL   29 (163)
T ss_pred             CCCCCCcHHHHHHHHHHHhCCeEEeCccC
Confidence            69999999999999999999999997654

>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=97.46  E-value=0.00027  Score=66.96  Aligned_cols=33  Identities=27%  Similarity=0.324  Sum_probs=29.8

Q ss_pred             eEEEEEcCCCCCchHHHHHHHHHhCCCeeeCch
Q 030464           79 VHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSS  111 (177)
Q Consensus        79 ~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~d  111 (177)
                      --|+|.||||||||.+|+.+|..+|++++++..
T Consensus       224 rGvLlHGPPGCGKT~lA~AiAgel~vPf~~isA  256 (802)
T KOG0733|consen  224 RGVLLHGPPGCGKTSLANAIAGELGVPFLSISA  256 (802)
T ss_pred             CceeeeCCCCccHHHHHHHHhhhcCCceEeecc
Confidence            347899999999999999999999999999863

>KOG3220 consensus Similar to bacterial dephospho-CoA kinase [Coenzyme transport and metabolism]

Probab=97.46  E-value=0.00036  Score=57.98  Aligned_cols=52  Identities=19%  Similarity=0.342  Sum_probs=45.1

Q ss_pred             eEEEEEcCCCCCchHHHHHHHHHhCCCeeeCchhhhhccCCCCchHHHHHHHH
Q 030464           79 VHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAV  131 (177)
Q Consensus        79 ~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~dLlr~el~~~s~lgk~i~~~l  131 (177)
                      ..|-++|..||||||+++.+ +.+|+++|+.|.+.|+.++++++.+..+.+..
T Consensus         2 ~iVGLTGgiatGKStVs~~f-~~~G~~vIDaD~vaR~vv~PG~p~~~~ive~F   53 (225)
T KOG3220|consen    2 LIVGLTGGIATGKSTVSQVF-KALGIPVIDADVVAREVVEPGTPAYRRIVEAF   53 (225)
T ss_pred             eEEEeecccccChHHHHHHH-HHcCCcEecHHHHHHHHhcCCChHHHHHHHHh
Confidence            35679999999999999877 59999999999999999999888777766654

>PRK06761 hypothetical protein; Provisional

Probab=97.45  E-value=0.00012  Score=63.20  Aligned_cols=33  Identities=24%  Similarity=0.231  Sum_probs=27.2

Q ss_pred             CeEEEEEcCCCCCchHHHHHHHHHhCCCeeeCc
Q 030464           78 GVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMS  110 (177)
Q Consensus        78 ~~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~  110 (177)
                      ++.|+|.|+|||||||+++.|++.++...+++.
T Consensus         3 ~~lIvI~G~~GsGKTTla~~L~~~L~~~g~~v~   35 (282)
T PRK06761          3 TKLIIIEGLPGFGKSTTAKMLNDILSQNGIEVE   35 (282)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHhcCcCceEEE
Confidence            457999999999999999999999876544443

>TIGR00455 apsK adenylylsulfate kinase (apsK)

Probab=97.45  E-value=0.00014  Score=57.57  Aligned_cols=40  Identities=30%  Similarity=0.267  Sum_probs=30.7

Q ss_pred             CCCeEEEEEcCCCCCchHHHHHHHHHh---C--CCeeeCchhhhhc
Q 030464           76 RRGVHWAFIGSPRAKKHVYAEMLSKLL---E--VPRISMSSIVRQD  116 (177)
Q Consensus        76 ~~~~~IlIiGpPGSGKSTlA~~LAk~l---g--l~~Is~~dLlr~e  116 (177)
                      .++..|+|+|+|||||||+++.|+..+   |  +.+++. +-+++.
T Consensus        16 ~~~~~i~i~G~~GsGKstla~~l~~~l~~~~~~~~~l~~-d~~r~~   60 (184)
T TIGR00455        16 HRGVVIWLTGLSGSGKSTIANALEKKLESKGYRVYVLDG-DNVRHG   60 (184)
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECC-hHHHhh
Confidence            467789999999999999999999886   3  445554 445543

Important residue (active site in E.coli) is residue 100 of the seed alignment.

>PHA02575 1 deoxynucleoside monophosphate kinase; Provisional

Probab=97.44  E-value=0.00011  Score=61.67  Aligned_cols=38  Identities=16%  Similarity=0.149  Sum_probs=32.1

Q ss_pred             eEEEEEcCCCCCchHHHHHHHHHhCCCe-eeCchhhhhcc
Q 030464           79 VHWAFIGSPRAKKHVYAEMLSKLLEVPR-ISMSSIVRQDL  117 (177)
Q Consensus        79 ~~IlIiGpPGSGKSTlA~~LAk~lgl~~-Is~~dLlr~el  117 (177)
                      +.|.|+|.|||||||+|+.+ ++.|.++ +++++-++..+
T Consensus         1 miI~i~G~~gsGKstva~~~-~~~g~~~~~~~~d~ik~~l   39 (227)
T PHA02575          1 MLIAISGKKRSGKDTVADFI-IENYNAVKYQLADPIKEIL   39 (227)
T ss_pred             CEEEEeCCCCCCHHHHHHHH-HhcCCcEEEehhHHHHHHH
Confidence            47899999999999999876 5567777 99999888754

>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway

Probab=97.43  E-value=9.8e-05  Score=61.08  Aligned_cols=33  Identities=27%  Similarity=0.316  Sum_probs=27.9

Q ss_pred             EEEEcCCCCCchHHHHHHHHHhC-------CCeeeCchhh
Q 030464           81 WAFIGSPRAKKHVYAEMLSKLLE-------VPRISMSSIV  113 (177)
Q Consensus        81 IlIiGpPGSGKSTlA~~LAk~lg-------l~~Is~~dLl  113 (177)
                      |.|.|++||||||+|+.|+..+.       +.+|++++..
T Consensus         2 igI~G~sGSGKTTla~~L~~~l~~~~~~~~v~vi~~D~f~   41 (220)
T cd02025           2 IGIAGSVAVGKSTTARVLQALLSRWPDHPNVELITTDGFL   41 (220)
T ss_pred             EEeeCCCCCCHHHHHHHHHHHHhhcCCCCcEEEEecCccc
Confidence            67899999999999999998873       4578888764

The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.

>PRK03992 proteasome-activating nucleotidase; Provisional

Probab=97.43  E-value=0.00014  Score=65.04  Aligned_cols=38  Identities=18%  Similarity=0.225  Sum_probs=30.8

Q ss_pred             CCeEEEEEcCCCCCchHHHHHHHHHhCCCeeeC--chhhh
Q 030464           77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISM--SSIVR  114 (177)
Q Consensus        77 ~~~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~--~dLlr  114 (177)
                      .+..|+|.||||+|||++|+.+|..++.+++.+  .+++.
T Consensus       164 ~p~gvLL~GppGtGKT~lAkaia~~~~~~~i~v~~~~l~~  203 (389)
T PRK03992        164 PPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSELVQ  203 (389)
T ss_pred             CCCceEEECCCCCChHHHHHHHHHHhCCCEEEeehHHHhH
Confidence            456799999999999999999999998776554  34444

>TIGR01650 PD_CobS cobaltochelatase, CobS subunit

Probab=97.43  E-value=0.00012  Score=64.57  Aligned_cols=32  Identities=16%  Similarity=0.125  Sum_probs=28.5

Q ss_pred             CeEEEEEcCCCCCchHHHHHHHHHhCCCeeeC
Q 030464           78 GVHWAFIGSPRAKKHVYAEMLSKLLEVPRISM  109 (177)
Q Consensus        78 ~~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~  109 (177)
                      +..|+|.|+||+|||++++.||+.+|++++.+
T Consensus        64 ~~~ilL~G~pGtGKTtla~~lA~~l~~~~~rV   95 (327)
T TIGR01650        64 DRRVMVQGYHGTGKSTHIEQIAARLNWPCVRV   95 (327)
T ss_pred             CCcEEEEeCCCChHHHHHHHHHHHHCCCeEEE
Confidence            44699999999999999999999999987744

This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.

>CHL00195 ycf46 Ycf46; Provisional

Probab=97.42  E-value=0.00014  Score=67.13  Aligned_cols=34  Identities=12%  Similarity=0.215  Sum_probs=29.9

Q ss_pred             CCeEEEEEcCCCCCchHHHHHHHHHhCCCeeeCc
Q 030464           77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMS  110 (177)
Q Consensus        77 ~~~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~  110 (177)
                      .+.-|++.||||+|||.+|+.+|..++++.+.++
T Consensus       258 ~pkGILL~GPpGTGKTllAkaiA~e~~~~~~~l~  291 (489)
T CHL00195        258 TPRGLLLVGIQGTGKSLTAKAIANDWQLPLLRLD  291 (489)
T ss_pred             CCceEEEECCCCCcHHHHHHHHHHHhCCCEEEEE
Confidence            4567899999999999999999999999877653

>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []

Probab=97.42  E-value=0.00012  Score=58.34  Aligned_cols=23  Identities=22%  Similarity=0.274  Sum_probs=20.9

Q ss_pred             EEEEEcCCCCCchHHHHHHHHHh
Q 030464           80 HWAFIGSPRAKKHVYAEMLSKLL  102 (177)
Q Consensus        80 ~IlIiGpPGSGKSTlA~~LAk~l  102 (177)
                      +|+|+|+||+||||+.+++.+.+
T Consensus         1 ~i~iTG~pG~GKTTll~k~i~~l   23 (168)
T PF03266_consen    1 HIFITGPPGVGKTTLLKKVIEEL   23 (168)
T ss_dssp             EEEEES-TTSSHHHHHHHHHHHH
T ss_pred             CEEEECcCCCCHHHHHHHHHHHh
Confidence            68999999999999999999988

It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.

>cd02030 NDUO42 NADH:Ubiquinone oxioreductase, 42 kDa (NDUO42) is a family of proteins that are highly similar to deoxyribonucleoside kinases (dNK)

Probab=97.42  E-value=0.00059  Score=56.05  Aligned_cols=29  Identities=17%  Similarity=0.084  Sum_probs=25.2

Q ss_pred             EEEEEcCCCCCchHHHHHHHHHhCCCeee
Q 030464           80 HWAFIGSPRAKKHVYAEMLSKLLEVPRIS  108 (177)
Q Consensus        80 ~IlIiGpPGSGKSTlA~~LAk~lgl~~Is  108 (177)
                      .|+|-|.-||||||+++.|++.++..++.
T Consensus         1 ~I~iEG~~GsGKSTl~~~L~~~l~~~~~~   29 (219)
T cd02030           1 VITVDGNIASGKGKLAKELAEKLGMKYFP   29 (219)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHhCCCeee
Confidence            37899999999999999999999876553

Members of this family have been identified as one of the subunits of NADH:Ubiquinone oxioreductase (complex I), a multi-protein complex located in the inner mitochondrial membrane. The main function of the complex is to transport electrons from NADH to ubiquinone, which is accompanied by the translocation of protons from the mitochondrial matrix to the inter membrane space.

>COG0645 Predicted kinase [General function prediction only]

Probab=97.40  E-value=0.00087  Score=54.03  Aligned_cols=39  Identities=26%  Similarity=0.279  Sum_probs=33.8

Q ss_pred             EEEEEcCCCCCchHHHHHHHHHhCCCeeeCchhhhhccCC
Q 030464           80 HWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSP  119 (177)
Q Consensus        80 ~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~dLlr~el~~  119 (177)
                      -+++.|.||+||||+|+.|++.+|..+|+. |.+++.+..
T Consensus         3 l~l~~Gl~GsGKstlA~~l~~~lgA~~lrs-D~irk~L~g   41 (170)
T COG0645           3 LVLVGGLPGSGKSTLARGLAELLGAIRLRS-DVIRKRLFG   41 (170)
T ss_pred             EEEEecCCCccHhHHHHHHHhhcCceEEeh-HHHHHHhcC
Confidence            467889999999999999999999999997 556766655

>cd01673 dNK Deoxyribonucleoside kinase (dNK) catalyzes the phosphorylation of deoxyribonucleosides to yield corresponding monophosphates (dNMPs)

Probab=97.40  E-value=0.00014  Score=57.80  Aligned_cols=27  Identities=22%  Similarity=0.158  Sum_probs=24.0

Q ss_pred             EEEEcCCCCCchHHHHHHHHHhCCCee
Q 030464           81 WAFIGSPRAKKHVYAEMLSKLLEVPRI  107 (177)
Q Consensus        81 IlIiGpPGSGKSTlA~~LAk~lgl~~I  107 (177)
                      |+|.|++||||||+++.|++.+|+.++
T Consensus         2 I~ieG~~GsGKSTl~~~L~~~~~~~~~   28 (193)
T cd01673           2 IVVEGNIGAGKSTLAKELAEHLGYEVV   28 (193)
T ss_pred             EEEECCCCCCHHHHHHHHHHHhCCccc
Confidence            789999999999999999998876544

This family consists of various deoxynucleoside kinases including deoxyribo- cytidine (EC 2.7.1.74), guanosine (EC 2.7.1.113), adenosine (EC 2.7.1.76), and thymidine (EC 2.7.1.21) kinases. They are key enzymes in the salvage of deoxyribonucleosides originating from extra- or intracellular breakdown of DNA.

>PRK06526 transposase; Provisional

Probab=97.39  E-value=0.00011  Score=62.20  Aligned_cols=46  Identities=17%  Similarity=0.008  Sum_probs=33.8

Q ss_pred             cCcccCCCeEEEEEcCCCCCchHHHHHHHHHh-----CCCeeeCchhhhhc
Q 030464           71 EGRERRRGVHWAFIGSPRAKKHVYAEMLSKLL-----EVPRISMSSIVRQD  116 (177)
Q Consensus        71 ~~~~~~~~~~IlIiGpPGSGKSTlA~~LAk~l-----gl~~Is~~dLlr~e  116 (177)
                      .+.+...+.+++|+||||+|||++|..|+...     .+.++++.+++...
T Consensus        91 ~~~fi~~~~nlll~Gp~GtGKThLa~al~~~a~~~g~~v~f~t~~~l~~~l  141 (254)
T PRK06526         91 TLDFVTGKENVVFLGPPGTGKTHLAIGLGIRACQAGHRVLFATAAQWVARL  141 (254)
T ss_pred             cCchhhcCceEEEEeCCCCchHHHHHHHHHHHHHCCCchhhhhHHHHHHHH
Confidence            33455677899999999999999999987653     34456666666543

>smart00763 AAA_PrkA PrkA AAA domain

Probab=97.38  E-value=0.00016  Score=64.51  Aligned_cols=28  Identities=25%  Similarity=0.220  Sum_probs=25.0

Q ss_pred             CCeEEEEEcCCCCCchHHHHHHHHHhCC
Q 030464           77 RGVHWAFIGSPRAKKHVYAEMLSKLLEV  104 (177)
Q Consensus        77 ~~~~IlIiGpPGSGKSTlA~~LAk~lgl  104 (177)
                      +...++|.||||+||||+|+.|++.++.
T Consensus        77 ~r~il~L~GPPGsGKStla~~La~~l~~  104 (361)
T smart00763       77 RKQILYLLGPVGGGKSSLVECLKRGLEE  104 (361)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHHhh
Confidence            4566899999999999999999999876

This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.

>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional

Probab=97.38  E-value=0.00016  Score=65.44  Aligned_cols=34  Identities=24%  Similarity=0.395  Sum_probs=29.6

Q ss_pred             CCeEEEEEcCCCCCchHHHHHHHHHhCCCeeeCc
Q 030464           77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMS  110 (177)
Q Consensus        77 ~~~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~  110 (177)
                      ....|+|+||||+|||++|+.||+.++.+++.++
T Consensus       107 ~~~~iLl~Gp~GtGKT~lAr~lA~~l~~pf~~id  140 (412)
T PRK05342        107 QKSNILLIGPTGSGKTLLAQTLARILDVPFAIAD  140 (412)
T ss_pred             CCceEEEEcCCCCCHHHHHHHHHHHhCCCceecc
Confidence            3457999999999999999999999998877654

>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional

Probab=97.38  E-value=0.00018  Score=64.80  Aligned_cols=41  Identities=15%  Similarity=0.202  Sum_probs=32.4

Q ss_pred             CCCeEEEEEcCCCCCchHHHHHHHHHhCCCee--eCchhhhhc
Q 030464           76 RRGVHWAFIGSPRAKKHVYAEMLSKLLEVPRI--SMSSIVRQD  116 (177)
Q Consensus        76 ~~~~~IlIiGpPGSGKSTlA~~LAk~lgl~~I--s~~dLlr~e  116 (177)
                      ..|..+.|.||||+|||.+|+.+|+++|+..|  +.++|+.+.
T Consensus       146 k~PlgllL~GPPGcGKTllAraiA~elg~~~i~vsa~eL~sk~  188 (413)
T PLN00020        146 KVPLILGIWGGKGQGKSFQCELVFKKMGIEPIVMSAGELESEN  188 (413)
T ss_pred             CCCeEEEeeCCCCCCHHHHHHHHHHHcCCCeEEEEHHHhhcCc
Confidence            45566778899999999999999999998755  445566543

>TIGR01242 26Sp45 26S proteasome subunit P45 family

Probab=97.36  E-value=0.0002  Score=62.96  Aligned_cols=34  Identities=15%  Similarity=0.142  Sum_probs=29.3

Q ss_pred             CCeEEEEEcCCCCCchHHHHHHHHHhCCCeeeCc
Q 030464           77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMS  110 (177)
Q Consensus        77 ~~~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~  110 (177)
                      .+..|+|.||||+|||++|+.+++.++..++.+.
T Consensus       155 ~p~gvLL~GppGtGKT~lakaia~~l~~~~~~v~  188 (364)
T TIGR01242       155 PPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVV  188 (364)
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHhCCCCEEecc
Confidence            4566999999999999999999999988776653

Many proteins may score above the trusted cutoff because an internal

>COG2074 2-phosphoglycerate kinase [Carbohydrate transport and metabolism]

Probab=97.35  E-value=0.00023  Score=61.07  Aligned_cols=44  Identities=18%  Similarity=0.203  Sum_probs=36.5

Q ss_pred             cCCCeEEEEEcCCCCCchHHHHHHHHHhCCCeeeCchhhhhccC
Q 030464           75 RRRGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLS  118 (177)
Q Consensus        75 ~~~~~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~dLlr~el~  118 (177)
                      +.+|..|+|-|+||+||||+|..||.++|+.++=-.|.+|+.+.
T Consensus        86 ~~~p~IILIGGasGVGkStIA~ElA~rLgI~~visTD~IREvlR  129 (299)
T COG2074          86 MKRPLIILIGGASGVGKSTIAGELARRLGIRSVISTDSIREVLR  129 (299)
T ss_pred             cCCCeEEEecCCCCCChhHHHHHHHHHcCCceeecchHHHHHHH
Confidence            45677788888999999999999999999997666677777654

>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes

Probab=97.35  E-value=0.0018  Score=50.59  Aligned_cols=31  Identities=19%  Similarity=0.147  Sum_probs=24.4

Q ss_pred             EEEEEcCCCCCchHHHHHHHHHh---C--CCeeeCc
Q 030464           80 HWAFIGSPRAKKHVYAEMLSKLL---E--VPRISMS  110 (177)
Q Consensus        80 ~IlIiGpPGSGKSTlA~~LAk~l---g--l~~Is~~  110 (177)
                      .++++|+||+||||++..++..+   |  +.+++.+
T Consensus         2 ~~~~~G~~G~GKTt~~~~la~~~~~~g~~v~~i~~D   37 (173)
T cd03115           2 VILLVGLQGVGKTTTAAKLALYLKKKGKKVLLVAAD   37 (173)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEcC
Confidence            47899999999999999998765   4  3456654

SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.

>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional

Probab=97.34  E-value=0.00021  Score=64.40  Aligned_cols=31  Identities=13%  Similarity=0.157  Sum_probs=27.7

Q ss_pred             CCeEEEEEcCCCCCchHHHHHHHHHhCCCee
Q 030464           77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRI  107 (177)
Q Consensus        77 ~~~~IlIiGpPGSGKSTlA~~LAk~lgl~~I  107 (177)
                      ...+|+|+|++||||||+++.|++.+|...+
T Consensus       218 ~~~~IvI~G~~gsGKTTL~~~La~~~g~~~v  248 (399)
T PRK08099        218 FVRTVAILGGESSGKSTLVNKLANIFNTTSA  248 (399)
T ss_pred             CCcEEEEEcCCCCCHHHHHHHHHHHhCCCee
Confidence            5578999999999999999999999988743

>PRK07429 phosphoribulokinase; Provisional

Probab=97.33  E-value=0.00023  Score=62.57  Aligned_cols=38  Identities=24%  Similarity=0.257  Sum_probs=33.1

Q ss_pred             CCCeEEEEEcCCCCCchHHHHHHHHHhC---CCeeeCchhh
Q 030464           76 RRGVHWAFIGSPRAKKHVYAEMLSKLLE---VPRISMSSIV  113 (177)
Q Consensus        76 ~~~~~IlIiGpPGSGKSTlA~~LAk~lg---l~~Is~~dLl  113 (177)
                      .+++.|.|.|++||||||+++.|++.++   ..+++++++.
T Consensus         6 ~~~~IIgI~G~SGSGKSTla~~L~~ll~~~~~~vi~~Dd~~   46 (327)
T PRK07429          6 DRPVLLGVAGDSGCGKTTFLRGLADLLGEELVTVICTDDYH   46 (327)
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHhHhccCceEEEEecccc
Confidence            5778999999999999999999999987   5678888764

>PF13173 AAA_14: AAA domain

Probab=97.33  E-value=0.00026  Score=53.13  Aligned_cols=38  Identities=16%  Similarity=0.077  Sum_probs=31.5

Q ss_pred             CeEEEEEcCCCCCchHHHHHHHHHhC----CCeeeCchhhhh
Q 030464           78 GVHWAFIGSPRAKKHVYAEMLSKLLE----VPRISMSSIVRQ  115 (177)
Q Consensus        78 ~~~IlIiGpPGSGKSTlA~~LAk~lg----l~~Is~~dLlr~  115 (177)
                      ...++|.||.||||||+++++++.+.    +.++++++.-..
T Consensus         2 ~~~~~l~G~R~vGKTtll~~~~~~~~~~~~~~yi~~~~~~~~   43 (128)
T PF13173_consen    2 RKIIILTGPRGVGKTTLLKQLAKDLLPPENILYINFDDPRDR   43 (128)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHhcccccceeeccCCHHHH
Confidence            35689999999999999999998865    788888875443

>TIGR00554 panK_bact pantothenate kinase, bacterial type

Probab=97.32  E-value=0.00021  Score=61.87  Aligned_cols=39  Identities=23%  Similarity=0.246  Sum_probs=30.8

Q ss_pred             CCCeEEEEEcCCCCCchHHHHHHHHHhC-------CCeeeCchhhh
Q 030464           76 RRGVHWAFIGSPRAKKHVYAEMLSKLLE-------VPRISMSSIVR  114 (177)
Q Consensus        76 ~~~~~IlIiGpPGSGKSTlA~~LAk~lg-------l~~Is~~dLlr  114 (177)
                      ..+..|.|.|++||||||+|+.|+..+.       +..+++++...
T Consensus        60 ~~p~IIGIaG~~GSGKSTlar~L~~ll~~~~~~g~V~vi~~D~f~~  105 (290)
T TIGR00554        60 KIPYIISIAGSVAVGKSTTARILQALLSRWPEHRKVELITTDGFLH  105 (290)
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHHhhcCCCCceEEEecccccc
Confidence            4677889999999999999998876653       55678877553

Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.

>PRK14737 gmk guanylate kinase; Provisional

Probab=97.30  E-value=0.00023  Score=57.46  Aligned_cols=26  Identities=8%  Similarity=-0.054  Sum_probs=23.8

Q ss_pred             CCeEEEEEcCCCCCchHHHHHHHHHh
Q 030464           77 RGVHWAFIGSPRAKKHVYAEMLSKLL  102 (177)
Q Consensus        77 ~~~~IlIiGpPGSGKSTlA~~LAk~l  102 (177)
                      ++..|+|+||+||||+|++++|.+.+
T Consensus         3 ~~~~ivl~GpsG~GK~tl~~~l~~~~   28 (186)
T PRK14737          3 SPKLFIISSVAGGGKSTIIQALLEEH   28 (186)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHhcC
Confidence            57789999999999999999998876

>PHA02244 ATPase-like protein

Probab=97.30  E-value=0.00022  Score=63.96  Aligned_cols=39  Identities=18%  Similarity=0.230  Sum_probs=33.7

Q ss_pred             CCCeEEEEEcCCCCCchHHHHHHHHHhCCCeeeCchhhh
Q 030464           76 RRGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVR  114 (177)
Q Consensus        76 ~~~~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~dLlr  114 (177)
                      ..+..|+|.||||+|||++|+.|+..++.+++.+.+++.
T Consensus       117 ~~~~PVLL~GppGtGKTtLA~aLA~~lg~pfv~In~l~d  155 (383)
T PHA02244        117 NANIPVFLKGGAGSGKNHIAEQIAEALDLDFYFMNAIMD  155 (383)
T ss_pred             hcCCCEEEECCCCCCHHHHHHHHHHHhCCCEEEEecChH
Confidence            355679999999999999999999999999998876543

>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]

Probab=97.29  E-value=0.0003  Score=63.60  Aligned_cols=36  Identities=14%  Similarity=0.186  Sum_probs=30.5

Q ss_pred             CCeEEEEEcCCCCCchHHHHHHHHHhCCCeeeCchh
Q 030464           77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSI  112 (177)
Q Consensus        77 ~~~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~dL  112 (177)
                      .-...++-||||+||||+|+.||+..+..+..+...
T Consensus        47 ~l~SmIl~GPPG~GKTTlA~liA~~~~~~f~~~sAv   82 (436)
T COG2256          47 HLHSMILWGPPGTGKTTLARLIAGTTNAAFEALSAV   82 (436)
T ss_pred             CCceeEEECCCCCCHHHHHHHHHHhhCCceEEeccc
Confidence            334678999999999999999999999988777653

>PRK08533 flagellar accessory protein FlaH; Reviewed

Probab=97.29  E-value=0.00056  Score=56.88  Aligned_cols=35  Identities=17%  Similarity=0.176  Sum_probs=25.2

Q ss_pred             CCCeEEEEEcCCCCCchHHHHHHHHHh-----CCCeeeCc
Q 030464           76 RRGVHWAFIGSPRAKKHVYAEMLSKLL-----EVPRISMS  110 (177)
Q Consensus        76 ~~~~~IlIiGpPGSGKSTlA~~LAk~l-----gl~~Is~~  110 (177)
                      .++-.++|.|+||+||||+|.+++...     ++.+++..
T Consensus        22 ~~g~~~~i~G~~G~GKTtl~~~~~~~~~~~g~~~~yi~~e   61 (230)
T PRK08533         22 PAGSLILIEGDESTGKSILSQRLAYGFLQNGYSVSYVSTQ   61 (230)
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEeCC
Confidence            455689999999999999986654432     34466654

>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX)

Probab=97.28  E-value=0.00024  Score=64.37  Aligned_cols=32  Identities=25%  Similarity=0.380  Sum_probs=28.3

Q ss_pred             CeEEEEEcCCCCCchHHHHHHHHHhCCCeeeC
Q 030464           78 GVHWAFIGSPRAKKHVYAEMLSKLLEVPRISM  109 (177)
Q Consensus        78 ~~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~  109 (177)
                      ...|+|+||||+|||++|+.||+.++++++.+
T Consensus       116 ~~~iLL~GP~GsGKT~lAraLA~~l~~pf~~~  147 (413)
T TIGR00382       116 KSNILLIGPTGSGKTLLAQTLARILNVPFAIA  147 (413)
T ss_pred             CceEEEECCCCcCHHHHHHHHHHhcCCCeEEe
Confidence            45899999999999999999999999887644

A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.

>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional

Probab=97.28  E-value=0.00027  Score=63.62  Aligned_cols=34  Identities=15%  Similarity=0.136  Sum_probs=29.9

Q ss_pred             CCeEEEEEcCCCCCchHHHHHHHHHhCCCeeeCc
Q 030464           77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMS  110 (177)
Q Consensus        77 ~~~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~  110 (177)
                      .+..|+|.||||+|||++|+.+|...+..++.+.
T Consensus       178 ~pkgvLL~GppGTGKT~LAkalA~~l~~~fi~i~  211 (398)
T PTZ00454        178 PPRGVLLYGPPGTGKTMLAKAVAHHTTATFIRVV  211 (398)
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEe
Confidence            4567999999999999999999999998877663

>CHL00176 ftsH cell division protein; Validated

Probab=97.27  E-value=0.001  Score=63.37  Aligned_cols=33  Identities=27%  Similarity=0.359  Sum_probs=29.8

Q ss_pred             CeEEEEEcCCCCCchHHHHHHHHHhCCCeeeCc
Q 030464           78 GVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMS  110 (177)
Q Consensus        78 ~~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~  110 (177)
                      +..|+|.||||+|||++|+.+|...+++++.+.
T Consensus       216 p~gVLL~GPpGTGKT~LAralA~e~~~p~i~is  248 (638)
T CHL00176        216 PKGVLLVGPPGTGKTLLAKAIAGEAEVPFFSIS  248 (638)
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHhCCCeeecc
Confidence            556999999999999999999999999988764

>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs

Probab=97.25  E-value=0.00021  Score=55.86  Aligned_cols=33  Identities=12%  Similarity=0.040  Sum_probs=25.3

Q ss_pred             EEEEcCCCCCchHHHHHHHHHh-----CCCeeeCchhh
Q 030464           81 WAFIGSPRAKKHVYAEMLSKLL-----EVPRISMSSIV  113 (177)
Q Consensus        81 IlIiGpPGSGKSTlA~~LAk~l-----gl~~Is~~dLl  113 (177)
                      ++|.|+||+|||+++.+++...     .+.++++.+-.
T Consensus         2 ~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s~e~~~   39 (187)
T cd01124           2 TLLSGGPGTGKTTFALQFLYAGLARGEPGLYVTLEESP   39 (187)
T ss_pred             EEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEECCCCH
Confidence            6899999999999999886542     45578875433

A related protein is found in archaea.

>PRK06921 hypothetical protein; Provisional

Probab=97.24  E-value=0.00027  Score=60.18  Aligned_cols=38  Identities=16%  Similarity=0.110  Sum_probs=29.0

Q ss_pred             CeEEEEEcCCCCCchHHHHHHHHHh----CC--CeeeCchhhhh
Q 030464           78 GVHWAFIGSPRAKKHVYAEMLSKLL----EV--PRISMSSIVRQ  115 (177)
Q Consensus        78 ~~~IlIiGpPGSGKSTlA~~LAk~l----gl--~~Is~~dLlr~  115 (177)
                      ...++|.|+||+|||+++..+++.+    |.  .+++..+++..
T Consensus       117 ~~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~~~~l~~~  160 (266)
T PRK06921        117 KNSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFPFVEGFGD  160 (266)
T ss_pred             CCeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEEHHHHHHH
Confidence            4579999999999999999998864    33  36666565554

>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]

Probab=97.24  E-value=0.00029  Score=67.48  Aligned_cols=37  Identities=22%  Similarity=0.349  Sum_probs=31.5

Q ss_pred             cCCCeEEEEEcCCCCCchHHHHHHHHHhCCCe--eeCch
Q 030464           75 RRRGVHWAFIGSPRAKKHVYAEMLSKLLEVPR--ISMSS  111 (177)
Q Consensus        75 ~~~~~~IlIiGpPGSGKSTlA~~LAk~lgl~~--Is~~d  111 (177)
                      -.++++++++||||+|||.+++.+|+.+|-.+  +++|.
T Consensus       347 ~~kGpILcLVGPPGVGKTSLgkSIA~al~RkfvR~sLGG  385 (782)
T COG0466         347 KLKGPILCLVGPPGVGKTSLGKSIAKALGRKFVRISLGG  385 (782)
T ss_pred             cCCCcEEEEECCCCCCchhHHHHHHHHhCCCEEEEecCc
Confidence            35778999999999999999999999998665  55554

>COG0324 MiaA tRNA delta(2)-isopentenylpyrophosphate transferase [Translation, ribosomal structure and biogenesis]

Probab=97.22  E-value=0.00038  Score=60.89  Aligned_cols=36  Identities=25%  Similarity=0.204  Sum_probs=32.9

Q ss_pred             CCeEEEEEcCCCCCchHHHHHHHHHhCCCeeeCchh
Q 030464           77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSI  112 (177)
Q Consensus        77 ~~~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~dL  112 (177)
                      .+..|+|+||.+||||-+|-.||+++|..+||+|.+
T Consensus         2 ~~~~i~I~GPTAsGKT~lai~LAk~~~~eIIs~DSm   37 (308)
T COG0324           2 KPKLIVIAGPTASGKTALAIALAKRLGGEIISLDSM   37 (308)
T ss_pred             CccEEEEECCCCcCHHHHHHHHHHHcCCcEEecchh
Confidence            356789999999999999999999999999999874

>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes

Probab=97.22  E-value=0.00057  Score=58.93  Aligned_cols=35  Identities=17%  Similarity=0.153  Sum_probs=29.1

Q ss_pred             EEEEEcCCCCCchHHHHHHHHHhC-----CCeeeCchhhh
Q 030464           80 HWAFIGSPRAKKHVYAEMLSKLLE-----VPRISMSSIVR  114 (177)
Q Consensus        80 ~IlIiGpPGSGKSTlA~~LAk~lg-----l~~Is~~dLlr  114 (177)
                      .|.|.|++||||||++++|++.++     +.+|+.++..+
T Consensus         1 IIgItG~SGSGKTTv~~~l~~~l~~~g~~v~vI~~D~yyr   40 (277)
T cd02029           1 VIAVTGSSGAGTTTVKRAFEHIFAREGIHPAVVEGDSFHR   40 (277)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHHHhcCCceEEEecccccc
Confidence            378999999999999999998773     45788777666

PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.

>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit

Probab=97.22  E-value=0.00038  Score=59.12  Aligned_cols=30  Identities=20%  Similarity=0.237  Sum_probs=25.8

Q ss_pred             CCeEEEEEcCCCCCchHHHHHHHHHhCCCe
Q 030464           77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPR  106 (177)
Q Consensus        77 ~~~~IlIiGpPGSGKSTlA~~LAk~lgl~~  106 (177)
                      .+..++|.||||+|||++|+.+|+.++...
T Consensus        29 ~~~~~ll~Gp~G~GKT~la~~ia~~~~~~~   58 (305)
T TIGR00635        29 ALDHLLLYGPPGLGKTTLAHIIANEMGVNL   58 (305)
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHhCCCE
Confidence            345689999999999999999999988653

RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.

>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily

Probab=97.22  E-value=0.0013  Score=63.07  Aligned_cols=33  Identities=15%  Similarity=0.154  Sum_probs=29.2

Q ss_pred             CeEEEEEcCCCCCchHHHHHHHHHhCCCeeeCc
Q 030464           78 GVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMS  110 (177)
Q Consensus        78 ~~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~  110 (177)
                      +..|+|.||||||||++|+.+|...+.+++++.
T Consensus       487 ~~giLL~GppGtGKT~lakalA~e~~~~fi~v~  519 (733)
T TIGR01243       487 PKGVLLFGPPGTGKTLLAKAVATESGANFIAVR  519 (733)
T ss_pred             CceEEEECCCCCCHHHHHHHHHHhcCCCEEEEe
Confidence            456899999999999999999999998877764

This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.

>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical

Probab=97.21  E-value=0.00066  Score=55.40  Aligned_cols=88  Identities=15%  Similarity=0.149  Sum_probs=51.8

Q ss_pred             cCCCeEEEEEcCCCCCchHHHHHHHHH------hCCCeeeCchhhhhccCCCCchHHHHHHHHHcCCc------------
Q 030464           75 RRRGVHWAFIGSPRAKKHVYAEMLSKL------LEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEV------------  136 (177)
Q Consensus        75 ~~~~~~IlIiGpPGSGKSTlA~~LAk~------lgl~~Is~~dLlr~el~~~s~lgk~i~~~l~~G~~------------  136 (177)
                      ..++-.++|.|+||+|||++|.+++..      -++.++++.+-.++.++.-..++-.+.++.++|..            
T Consensus        16 ip~gs~~li~G~~GsGKT~l~~q~l~~~~~~~ge~vlyvs~ee~~~~l~~~~~s~g~d~~~~~~~g~l~~~d~~~~~~~~   95 (226)
T PF06745_consen   16 IPKGSVVLISGPPGSGKTTLALQFLYNGLKNFGEKVLYVSFEEPPEELIENMKSFGWDLEEYEDSGKLKIIDAFPERIGW   95 (226)
T ss_dssp             EETTSEEEEEESTTSSHHHHHHHHHHHHHHHHT--EEEEESSS-HHHHHHHHHTTTS-HHHHHHTTSEEEEESSGGGST-
T ss_pred             CCCCcEEEEEeCCCCCcHHHHHHHHHHhhhhcCCcEEEEEecCCHHHHHHHHHHcCCcHHHHhhcCCEEEEecccccccc
Confidence            457788999999999999999986532      34568888654433322222333334555555431            


Q ss_pred             ---chHHHHHHHHHHHHHccCCCCcceEEEeCC
Q 030464          137 ---VSEDIIFGLLSKRLEDGYYRGEIGFILDGL  166 (177)
Q Consensus       137 ---Ipdeli~~Ll~~~L~~~~~~~~~G~ILDGf  166 (177)
                         -++++ ...+.+.+++..   ..-+|||.+
T Consensus        96 ~~~~~~~l-~~~i~~~i~~~~---~~~vVIDsl  124 (226)
T PF06745_consen   96 SPNDLEEL-LSKIREAIEELK---PDRVVIDSL  124 (226)
T ss_dssp             TSCCHHHH-HHHHHHHHHHHT---SSEEEEETH
T ss_pred             cccCHHHH-HHHHHHHHHhcC---CCEEEEECH
Confidence               12233 344455566553   368999975

More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....

>TIGR01526 nadR_NMN_Atrans nicotinamide-nucleotide adenylyltransferase, NadR type

Probab=97.21  E-value=0.00035  Score=61.17  Aligned_cols=31  Identities=13%  Similarity=0.130  Sum_probs=27.9

Q ss_pred             CeEEEEEcCCCCCchHHHHHHHHHhCCCeee
Q 030464           78 GVHWAFIGSPRAKKHVYAEMLSKLLEVPRIS  108 (177)
Q Consensus        78 ~~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is  108 (177)
                      ..+|+|+|+||+||||+++.|++.++.+++.
T Consensus       162 ~~~~~~~G~~~~gkstl~~~l~~~~~~~~v~  192 (325)
T TIGR01526       162 VKTVAILGGESTGKSTLVNKLAAVFNTTSAW  192 (325)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHhhCCCEEe
Confidence            5689999999999999999999999988743

E. coli NadR has also been found to regulate the import of its substrate, nicotinamide ribonucleotide, but it is not known if the other members of this model share that activity.

>TIGR02655 circ_KaiC circadian clock protein KaiC

Probab=97.21  E-value=0.00039  Score=63.79  Aligned_cols=89  Identities=12%  Similarity=0.015  Sum_probs=56.9

Q ss_pred             cCCCeEEEEEcCCCCCchHHHHHHHHHh---C--CCeeeCchhhhhccCCCCchHHHHHHHHHcCCcc----------hH
Q 030464           75 RRRGVHWAFIGSPRAKKHVYAEMLSKLL---E--VPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVV----------SE  139 (177)
Q Consensus        75 ~~~~~~IlIiGpPGSGKSTlA~~LAk~l---g--l~~Is~~dLlr~el~~~s~lgk~i~~~l~~G~~I----------pd  139 (177)
                      ..++-.++|.|+||+||||++.+++...   |  +.+++..+-..+.+..-..+|-.+.+..++|...          ++
T Consensus       260 ~~~gs~~li~G~~G~GKt~l~~~f~~~~~~~ge~~~y~s~eEs~~~i~~~~~~lg~~~~~~~~~g~l~~~~~~p~~~~~~  339 (484)
T TIGR02655       260 FFKDSIILATGATGTGKTLLVSKFLENACANKERAILFAYEESRAQLLRNAYSWGIDFEEMEQQGLLKIICAYPESAGLE  339 (484)
T ss_pred             ccCCcEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCHHHHHHHHHHcCCChHHHhhCCcEEEEEcccccCChH
Confidence            4577889999999999999999987754   3  5688887655444333233333345555555321          24


Q ss_pred             HHHHHHHHHHHHccCCCCcceEEEeCCC
Q 030464          140 DIIFGLLSKRLEDGYYRGEIGFILDGLP  167 (177)
Q Consensus       140 eli~~Ll~~~L~~~~~~~~~G~ILDGfP  167 (177)
                      +.+..++ +.+++..   .+-+|||.+-
T Consensus       340 ~~~~~i~-~~i~~~~---~~~vvIDsi~  363 (484)
T TIGR02655       340 DHLQIIK-SEIADFK---PARIAIDSLS  363 (484)
T ss_pred             HHHHHHH-HHHHHcC---CCEEEEcCHH
Confidence            5555554 4455543   3579999863

Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.

>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily

Probab=97.21  E-value=0.00069  Score=56.16  Aligned_cols=26  Identities=23%  Similarity=0.110  Sum_probs=23.1

Q ss_pred             CeEEEEEcCCCCCchHHHHHHHHHhC
Q 030464           78 GVHWAFIGSPRAKKHVYAEMLSKLLE  103 (177)
Q Consensus        78 ~~~IlIiGpPGSGKSTlA~~LAk~lg  103 (177)
                      +..++|.|++|+||||+++.+++.+.
T Consensus        43 ~~~~~l~G~~G~GKTtl~~~l~~~l~   68 (269)
T TIGR03015        43 EGFILITGEVGAGKTTLIRNLLKRLD   68 (269)
T ss_pred             CCEEEEEcCCCCCHHHHHHHHHHhcC
Confidence            44689999999999999999998875

Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.

>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity

Probab=97.20  E-value=0.00068  Score=56.89  Aligned_cols=21  Identities=33%  Similarity=0.491  Sum_probs=18.3

Q ss_pred             EEcCCCCCchHHHHHHHHHhC
Q 030464           83 FIGSPRAKKHVYAEMLSKLLE  103 (177)
Q Consensus        83 IiGpPGSGKSTlA~~LAk~lg  103 (177)
                      |+|||||||||+|+.+.+-+.
T Consensus         1 ViGpaGSGKTT~~~~~~~~~~   21 (238)
T PF03029_consen    1 VIGPAGSGKTTFCKGLSEWLE   21 (238)
T ss_dssp             -EESTTSSHHHHHHHHHHHHT
T ss_pred             CCCCCCCCHHHHHHHHHHHHH
Confidence            689999999999999988763

; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.

>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=97.19  E-value=0.00025  Score=63.34  Aligned_cols=52  Identities=17%  Similarity=0.158  Sum_probs=41.2

Q ss_pred             CccccCccCcccCCCeEEEEEcCCCCCchHHHHHHHHHhCCCeeeC--chhhhh
Q 030464           64 SVTLPDTEGRERRRGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISM--SSIVRQ  115 (177)
Q Consensus        64 ~~~~~~~~~~~~~~~~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~--~dLlr~  115 (177)
                      ..|.+.+.|.-...+..|++.||||+|||-+|+++|++-|..+|++  +.+..+
T Consensus       113 r~pelF~~g~Ll~p~kGiLL~GPpG~GKTmlAKA~Akeaga~fInv~~s~lt~K  166 (386)
T KOG0737|consen  113 RRPELFAKGKLLRPPKGILLYGPPGTGKTMLAKAIAKEAGANFINVSVSNLTSK  166 (386)
T ss_pred             cchhhhcccccccCCccceecCCCCchHHHHHHHHHHHcCCCcceeeccccchh
Confidence            4566777777767888899999999999999999999998776655  445443

>PLN02348 phosphoribulokinase

Probab=97.19  E-value=0.00036  Score=62.87  Aligned_cols=28  Identities=11%  Similarity=0.162  Sum_probs=25.5

Q ss_pred             CCCeEEEEEcCCCCCchHHHHHHHHHhC
Q 030464           76 RRGVHWAFIGSPRAKKHVYAEMLSKLLE  103 (177)
Q Consensus        76 ~~~~~IlIiGpPGSGKSTlA~~LAk~lg  103 (177)
                      .+++.|.|.|++||||||+|++|++.++
T Consensus        47 ~~p~IIGIaG~SGSGKSTfA~~L~~~Lg   74 (395)
T PLN02348         47 DGTVVIGLAADSGCGKSTFMRRLTSVFG   74 (395)
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence            4678889999999999999999999986

>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []

Probab=97.19  E-value=0.00041  Score=55.43  Aligned_cols=37  Identities=32%  Similarity=0.433  Sum_probs=28.4

Q ss_pred             CeEEEEEcCCCCCchHHHHHHHHHhCC----C--eeeCchhhh
Q 030464           78 GVHWAFIGSPRAKKHVYAEMLSKLLEV----P--RISMSSIVR  114 (177)
Q Consensus        78 ~~~IlIiGpPGSGKSTlA~~LAk~lgl----~--~Is~~dLlr  114 (177)
                      ...++++||+|+|||.+|+.||+.+.+    +  .+++.++-.
T Consensus         3 ~~~~ll~GpsGvGKT~la~~la~~l~~~~~~~~~~~d~s~~~~   45 (171)
T PF07724_consen    3 KSNFLLAGPSGVGKTELAKALAELLFVGSERPLIRIDMSEYSE   45 (171)
T ss_dssp             SEEEEEESSTTSSHHHHHHHHHHHHT-SSCCEEEEEEGGGHCS
T ss_pred             EEEEEEECCCCCCHHHHHHHHHHHhccCCccchHHHhhhcccc
Confidence            357889999999999999999999885    3  455544433

The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....

>TIGR02928 orc1/cdc6 family replication initiation protein

Probab=97.17  E-value=0.0014  Score=56.94  Aligned_cols=26  Identities=19%  Similarity=0.160  Sum_probs=22.6

Q ss_pred             CCeEEEEEcCCCCCchHHHHHHHHHh
Q 030464           77 RGVHWAFIGSPRAKKHVYAEMLSKLL  102 (177)
Q Consensus        77 ~~~~IlIiGpPGSGKSTlA~~LAk~l  102 (177)
                      .+..++|.||||+|||++++.+.+.+
T Consensus        39 ~~~~i~I~G~~GtGKT~l~~~~~~~l   64 (365)
T TIGR02928        39 RPSNVFIYGKTGTGKTAVTKYVMKEL   64 (365)
T ss_pred             CCCcEEEECCCCCCHHHHHHHHHHHH
Confidence            45679999999999999999998754

Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.

>PRK04195 replication factor C large subunit; Provisional

Probab=97.17  E-value=0.00037  Score=63.72  Aligned_cols=32  Identities=19%  Similarity=0.162  Sum_probs=28.7

Q ss_pred             CeEEEEEcCCCCCchHHHHHHHHHhCCCeeeC
Q 030464           78 GVHWAFIGSPRAKKHVYAEMLSKLLEVPRISM  109 (177)
Q Consensus        78 ~~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~  109 (177)
                      +..++|.||||+||||+|+.||+.+++.++.+
T Consensus        39 ~~~lLL~GppG~GKTtla~ala~el~~~~iel   70 (482)
T PRK04195         39 KKALLLYGPPGVGKTSLAHALANDYGWEVIEL   70 (482)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHcCCCEEEE
Confidence            56789999999999999999999999877765

>PF01591 6PF2K: 6-phosphofructo-2-kinase; InterPro: IPR013079 6-Phosphofructo-2-kinase (2

Probab=97.16  E-value=0.0022  Score=53.65  Aligned_cols=89  Identities=15%  Similarity=0.181  Sum_probs=52.0

Q ss_pred             CCCeEEEEEcCCCCCchHHHHHHHHHh---C--CCeeeCchhhhhccCCC---------CchHHHHHHHHHcCCcchHHH
Q 030464           76 RRGVHWAFIGSPRAKKHVYAEMLSKLL---E--VPRISMSSIVRQDLSPR---------SSLHKQIANAVNRGEVVSEDI  141 (177)
Q Consensus        76 ~~~~~IlIiGpPGSGKSTlA~~LAk~l---g--l~~Is~~dLlr~el~~~---------s~lgk~i~~~l~~G~~Ipdel  141 (177)
                      ..++.|+++|.|+.|||++|++|+.-+   |  ..++++|+.=|+.....         ...+..+++.      +-.+.
T Consensus        10 ~~kl~ivmVGLPArGKs~ia~kl~ryL~w~g~~~~vFn~g~yRR~~~~~~~~~~ff~p~n~~~~~~R~~------~a~~~   83 (222)
T PF01591_consen   10 AGKLVIVMVGLPARGKSYIARKLCRYLNWLGVKTKVFNVGDYRRKLSGAPQDAEFFDPDNEEAKKLREQ------IAKEA   83 (222)
T ss_dssp             ---EEEEEESSTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHHHHSS-S-GGGGSTT-HHHHHHHHH------HHHHH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHHhhcCCCcceeecccceecccccccccccCCCCChHHHHHHHH------HHHHH
Confidence            467889999999999999999999765   3  45899998777765431         1222223222      22234


Q ss_pred             HHHHHHHHHHccCCCCcceEEEeCCCCCHHHHH
Q 030464          142 IFGLLSKRLEDGYYRGEIGFILDGLPRSRIQAT  174 (177)
Q Consensus       142 i~~Ll~~~L~~~~~~~~~G~ILDGfPrt~~QAe  174 (177)
                      +.+++ ..|.+..   ..--|+|+--.|.+.=+
T Consensus        84 l~dl~-~~l~~~~---G~VAI~DATN~T~~RR~  112 (222)
T PF01591_consen   84 LEDLI-EWLQEEG---GQVAIFDATNSTRERRK  112 (222)
T ss_dssp             HHHHH-HHHHTS-----SEEEEES---SHHHHH
T ss_pred             HHHHH-HHHhcCC---CeEEEEeCCCCCHHHHH
Confidence            44444 3355332   45789999877765433

7.1.105 from EC, 3.1.3.46 from EC) is a bifunctional enzyme that catalyses both the synthesis and the degradation of fructose-2, 6-bisphosphate. The fructose-2,6-bisphosphatase reaction involves a phosphohistidine intermediate. The catalytic pathway is: ATP + D-fructose 6-phosphate = ADP + D-fructose 2,6-bisphosphate D-fructose 2,6-bisphosphate + H2O = 6-fructose 6-phosphate + Pi The enzyme is important in the regulation of hepatic carbohydrate metabolism and is found in greatest quantities in the liver, kidney and heart. In mammals, several genes often encode different isoforms, each of which differs in its tissue distribution and enzymatic activity []. The family described here bears a resemblance to the ATP-driven phospho-fructokinases, however, they share little sequence similarity, although a few residues seem key to their interaction with fructose 6-phosphate []. This domain forms the N-terminal region of this enzyme, while IPR013078 from INTERPRO forms the C-terminal domain.; GO: 0003873 6-phosphofructo-2-kinase activity, 0005524 ATP binding, 0006000 fructose metabolic process; PDB: 2DWO_A 3QPW_A 3QPV_A 3QPU_A 2I1V_B 2DWP_A 2AXN_A 1K6M_B 3BIF_A 2BIF_A ....

>PF07931 CPT: Chloramphenicol phosphotransferase-like protein; InterPro: IPR012853 The members of this family are all similar to chloramphenicol 3-O phosphotransferase (CPT, Q56148 from SWISSPROT) expressed by Streptomyces venezuelae

Probab=97.16  E-value=0.00037  Score=56.19  Aligned_cols=37  Identities=22%  Similarity=0.256  Sum_probs=29.7

Q ss_pred             eEEEEEcCCCCCchHHHHHHHHHhCCC--eeeCchhhhh
Q 030464           79 VHWAFIGSPRAKKHVYAEMLSKLLEVP--RISMSSIVRQ  115 (177)
Q Consensus        79 ~~IlIiGpPGSGKSTlA~~LAk~lgl~--~Is~~dLlr~  115 (177)
                      ..|++.|++.|||||+|+.|.+.+.-+  |+++++++..
T Consensus         2 ~iI~LNG~sSSGKSsia~~Lq~~~~~p~~~l~~D~f~~~   40 (174)
T PF07931_consen    2 QIIILNGPSSSGKSSIARALQERLPEPWLHLSVDTFVDM   40 (174)
T ss_dssp             -EEEEEE-TTSSHHHHHHHHHHHSSS-EEEEEHHHHHHH
T ss_pred             eEEEEeCCCCCCHHHHHHHHHHhCcCCeEEEecChHHhh
Confidence            468999999999999999999998765  7888777763

Chloramphenicol (Cm) is a metabolite produced by this bacterium that can inhibit ribosomal peptidyl transferase activity and therefore protein production. By transferring a phosphate group to the C-3 hydroxyl group of Cm, CPT inactivates this potentially lethal metabolite [, ]. ; GO: 0005524 ATP binding, 0016740 transferase activity; PDB: 1QHX_A 1QHN_A 1GRR_A 1QHY_A 1QHS_A 1GRQ_A.

>PRK13342 recombination factor protein RarA; Reviewed

Probab=97.15  E-value=0.00044  Score=62.04  Aligned_cols=34  Identities=21%  Similarity=0.293  Sum_probs=28.9

Q ss_pred             CCeEEEEEcCCCCCchHHHHHHHHHhCCCeeeCc
Q 030464           77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMS  110 (177)
Q Consensus        77 ~~~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~  110 (177)
                      +...++|.||||+||||+|+.|++..+..++.+.
T Consensus        35 ~~~~ilL~GppGtGKTtLA~~ia~~~~~~~~~l~   68 (413)
T PRK13342         35 RLSSMILWGPPGTGKTTLARIIAGATDAPFEALS   68 (413)
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEe
Confidence            3457899999999999999999999887766654

>PRK06067 flagellar accessory protein FlaH; Validated

Probab=97.15  E-value=0.00051  Score=56.52  Aligned_cols=49  Identities=14%  Similarity=-0.016  Sum_probs=34.1

Q ss_pred             ccccCcc-CcccCCCeEEEEEcCCCCCchHHHHHHHHHh-----CCCeeeCchhh
Q 030464           65 VTLPDTE-GRERRRGVHWAFIGSPRAKKHVYAEMLSKLL-----EVPRISMSSIV  113 (177)
Q Consensus        65 ~~~~~~~-~~~~~~~~~IlIiGpPGSGKSTlA~~LAk~l-----gl~~Is~~dLl  113 (177)
                      .+.++.- +....++-.++|.|+||+|||++|.+++...     .+.++++.+-.
T Consensus        11 i~~LD~~l~gG~~~g~~~~i~G~~GsGKt~l~~~~~~~~~~~g~~~~y~~~e~~~   65 (234)
T PRK06067         11 NEELDRKLGGGIPFPSLILIEGDHGTGKSVLSQQFVYGALKQGKKVYVITTENTS   65 (234)
T ss_pred             CHHHHHhhCCCCcCCcEEEEECCCCCChHHHHHHHHHHHHhCCCEEEEEEcCCCH
Confidence            4455554 2344577788999999999999999986542     35577775433

>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]

Probab=97.14  E-value=0.0003  Score=67.90  Aligned_cols=40  Identities=23%  Similarity=0.228  Sum_probs=33.9

Q ss_pred             CCeEEEEEcCCCCCchHHHHHHHHHhCCCeeeCc--hhhhhc
Q 030464           77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMS--SIVRQD  116 (177)
Q Consensus        77 ~~~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~--dLlr~e  116 (177)
                      -|.-++++||||+|||-+|+++|.+-|+|++++.  +++.-.
T Consensus       343 iPkGvLL~GPPGTGKTLLAKAiAGEAgVPF~svSGSEFvE~~  384 (774)
T KOG0731|consen  343 IPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSVSGSEFVEMF  384 (774)
T ss_pred             CcCceEEECCCCCcHHHHHHHHhcccCCceeeechHHHHHHh
Confidence            4556899999999999999999999999999987  355443

>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5)

Probab=97.14  E-value=0.00032  Score=51.45  Aligned_cols=23  Identities=30%  Similarity=0.244  Sum_probs=20.4

Q ss_pred             EEEEcCCCCCchHHHHHHHHHhC
Q 030464           81 WAFIGSPRAKKHVYAEMLSKLLE  103 (177)
Q Consensus        81 IlIiGpPGSGKSTlA~~LAk~lg  103 (177)
                      |+|.|+||+|||++|+.|++.+.
T Consensus         1 I~i~G~~G~GKS~l~~~l~~~l~   23 (107)
T PF00910_consen    1 IWIYGPPGIGKSTLAKELAKDLL   23 (107)
T ss_pred             CEEECCCCCCHHHHHHHHHHHHH
Confidence            67999999999999999988653

All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity

>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []

Probab=97.13  E-value=0.00081  Score=56.06  Aligned_cols=83  Identities=18%  Similarity=0.129  Sum_probs=48.5

Q ss_pred             CCCeEEEEEcCCCCCchHHHHHHHHHhC--C-----CeeeCchhhhhccCCCCchHHHHHHHHHcCC-----cchHHHHH
Q 030464           76 RRGVHWAFIGSPRAKKHVYAEMLSKLLE--V-----PRISMSSIVRQDLSPRSSLHKQIANAVNRGE-----VVSEDIIF  143 (177)
Q Consensus        76 ~~~~~IlIiGpPGSGKSTlA~~LAk~lg--l-----~~Is~~dLlr~el~~~s~lgk~i~~~l~~G~-----~Ipdeli~  143 (177)
                      .....|+|.|++|+|||++|..+++...  -     ..++.+.-     .....+.+.+...+....     ....+...
T Consensus        17 ~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~-----~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~   91 (287)
T PF00931_consen   17 NEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKN-----PSLEQLLEQILRQLGEPDSSISDPKDIEELQ   91 (287)
T ss_dssp             TSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES------SCCHHHHHHHHHHHTCC-STSSCCSSHHHHH
T ss_pred             CCeEEEEEEcCCcCCcceeeeecccccccccccccccccccccc-----ccccccccccccccccccccccccccccccc
Confidence            3556788999999999999999987722  1     12222210     011223344445554441     12334466


Q ss_pred             HHHHHHHHccCCCCcceEEEeCCC
Q 030464          144 GLLSKRLEDGYYRGEIGFILDGLP  167 (177)
Q Consensus       144 ~Ll~~~L~~~~~~~~~G~ILDGfP  167 (177)
                      +.+.+.|.+.    .--+|||+.-
T Consensus        92 ~~l~~~L~~~----~~LlVlDdv~  111 (287)
T PF00931_consen   92 DQLRELLKDK----RCLLVLDDVW  111 (287)
T ss_dssp             HHHHHHHCCT----SEEEEEEEE-
T ss_pred             ccchhhhccc----cceeeeeeec
Confidence            6667777764    3578999863

This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.

>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2

Probab=97.12  E-value=0.00035  Score=53.55  Aligned_cols=23  Identities=13%  Similarity=0.150  Sum_probs=21.0

Q ss_pred             EEEEcCCCCCchHHHHHHHHHhC
Q 030464           81 WAFIGSPRAKKHVYAEMLSKLLE  103 (177)
Q Consensus        81 IlIiGpPGSGKSTlA~~LAk~lg  103 (177)
                      |+|+||+||||||+++.|++.+.
T Consensus         2 i~i~GpsGsGKstl~~~L~~~~~   24 (137)
T cd00071           2 IVLSGPSGVGKSTLLKRLLEEFD   24 (137)
T ss_pred             EEEECCCCCCHHHHHHHHHhcCC
Confidence            68899999999999999999764

7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.

>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed

Probab=97.12  E-value=0.00045  Score=59.87  Aligned_cols=30  Identities=20%  Similarity=0.200  Sum_probs=26.3

Q ss_pred             CeEEEEEcCCCCCchHHHHHHHHHhCCCee
Q 030464           78 GVHWAFIGSPRAKKHVYAEMLSKLLEVPRI  107 (177)
Q Consensus        78 ~~~IlIiGpPGSGKSTlA~~LAk~lgl~~I  107 (177)
                      +..++|.||||+|||++|+.+|+.++....
T Consensus        51 ~~~~ll~GppG~GKT~la~~ia~~l~~~~~   80 (328)
T PRK00080         51 LDHVLLYGPPGLGKTTLANIIANEMGVNIR   80 (328)
T ss_pred             CCcEEEECCCCccHHHHHHHHHHHhCCCeE
Confidence            456899999999999999999999987643

>TIGR00064 ftsY signal recognition particle-docking protein FtsY

Probab=97.12  E-value=0.0024  Score=54.57  Aligned_cols=27  Identities=19%  Similarity=0.170  Sum_probs=23.0

Q ss_pred             CCCeEEEEEcCCCCCchHHHHHHHHHh
Q 030464           76 RRGVHWAFIGSPRAKKHVYAEMLSKLL  102 (177)
Q Consensus        76 ~~~~~IlIiGpPGSGKSTlA~~LAk~l  102 (177)
                      .++..|+|+|+||+||||.+..||..+
T Consensus        70 ~~~~vi~l~G~~G~GKTTt~akLA~~l   96 (272)
T TIGR00064        70 NKPNVILFVGVNGVGKTTTIAKLANKL   96 (272)
T ss_pred             CCCeEEEEECCCCCcHHHHHHHHHHHH
Confidence            356678889999999999999998765

There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.

>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda

Probab=97.12  E-value=0.00034  Score=56.56  Aligned_cols=38  Identities=5%  Similarity=0.057  Sum_probs=28.8

Q ss_pred             CCCeEEEEEcCCCCCchHHHHHHHHHh-----CCCeeeCchhh
Q 030464           76 RRGVHWAFIGSPRAKKHVYAEMLSKLL-----EVPRISMSSIV  113 (177)
Q Consensus        76 ~~~~~IlIiGpPGSGKSTlA~~LAk~l-----gl~~Is~~dLl  113 (177)
                      ..+..|+|.|+||+|||++|+.+++..     .+.+++..++.
T Consensus        36 ~~~~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~~~~~~   78 (226)
T TIGR03420        36 KGDRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLPLAELA   78 (226)
T ss_pred             CCCCeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEeHHHHH
Confidence            345679999999999999999998765     24456655543

Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.

>TIGR00150 HI0065_YjeE ATPase, YjeE family

Probab=97.12  E-value=0.00054  Score=53.06  Aligned_cols=30  Identities=20%  Similarity=0.098  Sum_probs=26.6

Q ss_pred             CCCeEEEEEcCCCCCchHHHHHHHHHhCCC
Q 030464           76 RRGVHWAFIGSPRAKKHVYAEMLSKLLEVP  105 (177)
Q Consensus        76 ~~~~~IlIiGpPGSGKSTlA~~LAk~lgl~  105 (177)
                      ..+..|+|.|+.|+||||+++.+++.+|+.
T Consensus        20 ~~~~~i~l~G~lGaGKTtl~~~l~~~lg~~   49 (133)
T TIGR00150        20 DFGTVVLLKGDLGAGKTTLVQGLLQGLGIQ   49 (133)
T ss_pred             CCCCEEEEEcCCCCCHHHHHHHHHHHcCCC
Confidence            355679999999999999999999999864

Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.

>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]

Probab=97.11  E-value=0.00048  Score=57.36  Aligned_cols=31  Identities=19%  Similarity=0.112  Sum_probs=27.2

Q ss_pred             CeEEEEEcCCCCCchHHHHHHHHHhCCCeee
Q 030464           78 GVHWAFIGSPRAKKHVYAEMLSKLLEVPRIS  108 (177)
Q Consensus        78 ~~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is  108 (177)
                      .+.|+|-|+-|+||||+|+.||+++|..++.
T Consensus         4 ~~~IvI~G~IG~GKSTLa~~La~~l~~~~~~   34 (216)
T COG1428           4 AMVIVIEGMIGAGKSTLAQALAEHLGFKVFY   34 (216)
T ss_pred             ccEEEEecccccCHHHHHHHHHHHhCCceee
Confidence            5678999999999999999999999976543

>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases

Probab=97.10  E-value=0.00046  Score=49.99  Aligned_cols=23  Identities=13%  Similarity=0.044  Sum_probs=20.9

Q ss_pred             EEEEEcCCCCCchHHHHHHHHHh
Q 030464           80 HWAFIGSPRAKKHVYAEMLSKLL  102 (177)
Q Consensus        80 ~IlIiGpPGSGKSTlA~~LAk~l  102 (177)
                      +|+|+|++||||||+.++|+...
T Consensus         1 kI~V~G~~g~GKTsLi~~l~~~~   23 (119)
T PF08477_consen    1 KIVVLGDSGVGKTSLIRRLCGGE   23 (119)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSS
T ss_pred             CEEEECcCCCCHHHHHHHHhcCC
Confidence            69999999999999999998754

They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.

>PRK09087 hypothetical protein; Validated

Probab=97.10  E-value=0.00036  Score=57.99  Aligned_cols=33  Identities=12%  Similarity=0.023  Sum_probs=29.2

Q ss_pred             eEEEEEcCCCCCchHHHHHHHHHhCCCeeeCch
Q 030464           79 VHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSS  111 (177)
Q Consensus        79 ~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~d  111 (177)
                      ..++|.|++||||||+++.+++..+..+++.++
T Consensus        45 ~~l~l~G~~GsGKThLl~~~~~~~~~~~i~~~~   77 (226)
T PRK09087         45 PVVVLAGPVGSGKTHLASIWREKSDALLIHPNE   77 (226)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHhcCCEEecHHH
Confidence            458999999999999999999998888888754

>PF08303 tRNA_lig_kinase: tRNA ligase kinase domain; InterPro: IPR015966 This entry represents a kinase domain found in fungal tRNA ligases []

Probab=97.10  E-value=0.0018  Score=52.12  Aligned_cols=32  Identities=22%  Similarity=0.140  Sum_probs=28.7

Q ss_pred             EEEEcCCCCCchHHHHHHHHHhC-CCeeeCchh
Q 030464           81 WAFIGSPRAKKHVYAEMLSKLLE-VPRISMSSI  112 (177)
Q Consensus        81 IlIiGpPGSGKSTlA~~LAk~lg-l~~Is~~dL  112 (177)
                      |+=++.+||||||+|..|++.|| +-|+--+++
T Consensus         2 lvPIAtiGCGKTTva~aL~~LFg~wgHvQnDnI   34 (168)
T PF08303_consen    2 LVPIATIGCGKTTVALALSNLFGEWGHVQNDNI   34 (168)
T ss_pred             EeeecCCCcCHHHHHHHHHHHcCCCCccccCCC
Confidence            45578999999999999999999 999998876

Please see the following relevant references: [, ].; GO: 0003972 RNA ligase (ATP) activity, 0005524 ATP binding, 0006388 tRNA splicing, via endonucleolytic cleavage and ligation

>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional

Probab=97.10  E-value=0.00051  Score=62.66  Aligned_cols=33  Identities=12%  Similarity=0.143  Sum_probs=28.6

Q ss_pred             CCeEEEEEcCCCCCchHHHHHHHHHhCCCeeeC
Q 030464           77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISM  109 (177)
Q Consensus        77 ~~~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~  109 (177)
                      .+..++|.||||+|||++|+.+|..++..++.+
T Consensus       216 ~p~gVLL~GPPGTGKT~LAraIA~el~~~fi~V  248 (438)
T PTZ00361        216 PPKGVILYGPPGTGKTLLAKAVANETSATFLRV  248 (438)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHhhCCCEEEE
Confidence            456789999999999999999999998776654

>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]

Probab=97.10  E-value=0.00047  Score=56.24  Aligned_cols=33  Identities=24%  Similarity=0.199  Sum_probs=26.3

Q ss_pred             CeEEEEEcCCCCCchHHHHHHHHHhC-----CCeeeCc
Q 030464           78 GVHWAFIGSPRAKKHVYAEMLSKLLE-----VPRISMS  110 (177)
Q Consensus        78 ~~~IlIiGpPGSGKSTlA~~LAk~lg-----l~~Is~~  110 (177)
                      |..|+|+||+|+||||.+.+||..+.     +..++++
T Consensus         1 p~vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D   38 (196)
T PF00448_consen    1 PKVIALVGPTGVGKTTTIAKLAARLKLKGKKVALISAD   38 (196)
T ss_dssp             SEEEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEES
T ss_pred             CEEEEEECCCCCchHhHHHHHHHHHhhccccceeecCC
Confidence            56789999999999999999998763     4455553

SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....

>PRK00411 cdc6 cell division control protein 6; Reviewed

Probab=97.10  E-value=0.0022  Score=56.25  Aligned_cols=27  Identities=19%  Similarity=0.222  Sum_probs=23.2

Q ss_pred             CCCeEEEEEcCCCCCchHHHHHHHHHh
Q 030464           76 RRGVHWAFIGSPRAKKHVYAEMLSKLL  102 (177)
Q Consensus        76 ~~~~~IlIiGpPGSGKSTlA~~LAk~l  102 (177)
                      ..+..++|.|+||+|||++++.+++.+
T Consensus        53 ~~~~~~lI~G~~GtGKT~l~~~v~~~l   79 (394)
T PRK00411         53 SRPLNVLIYGPPGTGKTTTVKKVFEEL   79 (394)
T ss_pred             CCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence            345678999999999999999998865

>PRK08116 hypothetical protein; Validated

Probab=97.10  E-value=0.00087  Score=57.10  Aligned_cols=39  Identities=18%  Similarity=0.181  Sum_probs=30.6

Q ss_pred             CeEEEEEcCCCCCchHHHHHHHHHh---C--CCeeeCchhhhhc
Q 030464           78 GVHWAFIGSPRAKKHVYAEMLSKLL---E--VPRISMSSIVRQD  116 (177)
Q Consensus        78 ~~~IlIiGpPGSGKSTlA~~LAk~l---g--l~~Is~~dLlr~e  116 (177)
                      +.-++|.|+||+|||++|..+++.+   +  +.++++.+++...
T Consensus       114 ~~gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~~~~~ll~~i  157 (268)
T PRK08116        114 NVGLLLWGSVGTGKTYLAACIANELIEKGVPVIFVNFPQLLNRI  157 (268)
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHH
Confidence            3458999999999999999998874   3  4467777776653

>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]

Probab=97.09  E-value=0.00041  Score=60.17  Aligned_cols=41  Identities=20%  Similarity=0.354  Sum_probs=34.8

Q ss_pred             CCeEEEEEcCCCCCchHHHHHHHHHhCCCeeeCc--hhhhhcc
Q 030464           77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMS--SIVRQDL  117 (177)
Q Consensus        77 ~~~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~--dLlr~el  117 (177)
                      -|.+|+|.||||.|||.+|+.||.+.+++.+.+.  +|+-+.+
T Consensus       150 APknVLFyGppGTGKTm~Akalane~kvp~l~vkat~liGehV  192 (368)
T COG1223         150 APKNVLFYGPPGTGKTMMAKALANEAKVPLLLVKATELIGEHV  192 (368)
T ss_pred             CcceeEEECCCCccHHHHHHHHhcccCCceEEechHHHHHHHh
Confidence            5789999999999999999999999999988776  3555443

>PRK08903 DnaA regulatory inactivator Hda; Validated

Probab=97.08  E-value=0.00046  Score=56.38  Aligned_cols=36  Identities=8%  Similarity=0.065  Sum_probs=28.9

Q ss_pred             CeEEEEEcCCCCCchHHHHHHHHHh-----CCCeeeCchhh
Q 030464           78 GVHWAFIGSPRAKKHVYAEMLSKLL-----EVPRISMSSIV  113 (177)
Q Consensus        78 ~~~IlIiGpPGSGKSTlA~~LAk~l-----gl~~Is~~dLl  113 (177)
                      ...++|.|+||+|||++|+.++...     .+.+++..++.
T Consensus        42 ~~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~~~~~~   82 (227)
T PRK08903         42 DRFFYLWGEAGSGRSHLLQALVADASYGGRNARYLDAASPL   82 (227)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEehHHhH
Confidence            3468999999999999999998875     56677766543

>PLN02796 D-glycerate 3-kinase

Probab=97.07  E-value=0.00061  Score=60.49  Aligned_cols=38  Identities=11%  Similarity=0.061  Sum_probs=31.9

Q ss_pred             CCCeEEEEEcCCCCCchHHHHHHHHHhC-----CCeeeCchhh
Q 030464           76 RRGVHWAFIGSPRAKKHVYAEMLSKLLE-----VPRISMSSIV  113 (177)
Q Consensus        76 ~~~~~IlIiGpPGSGKSTlA~~LAk~lg-----l~~Is~~dLl  113 (177)
                      .++..|.|.|++||||||+++.|+..+.     ...|++++..
T Consensus        98 ~~pliIGI~G~sGSGKSTLa~~L~~lL~~~g~~~g~IsiDdfY  140 (347)
T PLN02796         98 IPPLVIGISAPQGCGKTTLVFALVYLFNATGRRAASLSIDDFY  140 (347)
T ss_pred             CCCEEEEEECCCCCcHHHHHHHHHHHhcccCCceeEEEECCcc
Confidence            3678899999999999999999998774     4567888765

>PRK14729 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Provisional

Probab=97.07  E-value=0.00067  Score=59.11  Aligned_cols=34  Identities=15%  Similarity=0.022  Sum_probs=29.9

Q ss_pred             CCeEEEEEcCCCCCchHHHHHHHHHhCCCeeeCch
Q 030464           77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSS  111 (177)
Q Consensus        77 ~~~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~d  111 (177)
                      .++.|+|+||.|||||.+|-.||++ +...||.|.
T Consensus         3 ~~~ii~I~GpTasGKS~LAl~LA~~-~~eIIsaDS   36 (300)
T PRK14729          3 ENKIVFIFGPTAVGKSNILFHFPKG-KAEIINVDS   36 (300)
T ss_pred             CCcEEEEECCCccCHHHHHHHHHHh-CCcEEeccH
Confidence            3457899999999999999999999 458999886

>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family

Probab=97.07  E-value=0.0011  Score=54.92  Aligned_cols=47  Identities=9%  Similarity=0.035  Sum_probs=32.2

Q ss_pred             ccccCcc-CcccCCCeEEEEEcCCCCCchHHHHHHHHH---hC--CCeeeCch
Q 030464           65 VTLPDTE-GRERRRGVHWAFIGSPRAKKHVYAEMLSKL---LE--VPRISMSS  111 (177)
Q Consensus        65 ~~~~~~~-~~~~~~~~~IlIiGpPGSGKSTlA~~LAk~---lg--l~~Is~~d  111 (177)
                      .+.++.- +....++-.++|.|+||+|||++|.+++..   -|  +.++++.+
T Consensus         7 i~~LD~~l~GG~~~gs~~lI~G~pGsGKT~la~~~l~~~~~~ge~~lyvs~ee   59 (237)
T TIGR03877         7 IPGMDEILHGGIPERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGIYVALEE   59 (237)
T ss_pred             cHhHHHHhcCCCcCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEEeeC
Confidence            3444442 223457888999999999999999876543   23  55777665

Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.

>PF02223 Thymidylate_kin: Thymidylate kinase; InterPro: IPR018094 Thymidylate kinase (2

Probab=97.06  E-value=0.0016  Score=51.40  Aligned_cols=50  Identities=14%  Similarity=0.150  Sum_probs=34.5

Q ss_pred             EEcCCCCCchHHHHHHHHHhCCCeeeCchhhhhccCCCCchHHHHHHHHHcCC
Q 030464           83 FIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGE  135 (177)
Q Consensus        83 IiGpPGSGKSTlA~~LAk~lgl~~Is~~dLlr~el~~~s~lgk~i~~~l~~G~  135 (177)
                      |-|..||||||+++.|++.+.-..+.  .++. .-...+++|+.+++.+....
T Consensus         1 ~EGiDGsGKtT~~~~L~~~l~~~~~~--~~~~-~~~~~~~~g~~ir~~l~~~~   50 (186)
T PF02223_consen    1 FEGIDGSGKTTQIRLLAEALKEKGYK--VIIT-FPPGSTPIGELIRELLRSES   50 (186)
T ss_dssp             EEESTTSSHHHHHHHHHHHHHHTTEE--EEEE-ESSTSSHHHHHHHHHHHTSS
T ss_pred             CCCCCCCCHHHHHHHHHHHHHHcCCc--cccc-CCCCCChHHHHHHHHHhccc
Confidence            56999999999999999987544333  1111 11345678888888888433

7.4.9 from EC; dTMP kinase) catalyzes the phosphorylation of thymidine 5'-monophosphate (dTMP) to form thymidine 5'-diphosphate (dTDP) in the presence of ATP and magnesium: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate Thymidylate kinase is an ubiquitous enzyme of about 25 Kd and is important in the dTTP synthesis pathway for DNA synthesis. The function of dTMP kinase in eukaryotes comes from the study of a cell cycle mutant, cdc8, in Saccharomyces cerevisiae. Structural and functional analyses suggest that the cDNA codes for authentic human dTMP kinase. The mRNA levels and enzyme activities corresponded to cell cycle progression and cell growth stages[]. ; GO: 0004798 thymidylate kinase activity, 0005524 ATP binding, 0006233 dTDP biosynthetic process; PDB: 2PLR_B 1NMX_A 1NN0_A 2XX3_A 1NN3_A 1E9F_A 1E2Q_A 1E2D_A 1E9A_A 1E99_A ....

>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]

Probab=97.06  E-value=0.001  Score=59.49  Aligned_cols=58  Identities=16%  Similarity=0.181  Sum_probs=44.5

Q ss_pred             ccccCccCcc---cCCCeEEEEEcCCCCCchHHHHHHHHHhCCCeeeCc--hhhhhccCCCCc
Q 030464           65 VTLPDTEGRE---RRRGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMS--SIVRQDLSPRSS  122 (177)
Q Consensus        65 ~~~~~~~~~~---~~~~~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~--dLlr~el~~~s~  122 (177)
                      .|..+.+.+.   +..|+-|++.||||+|||-+|+++|...+..+|.+-  +|+++.+..+..
T Consensus       169 LPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~AtFIrvvgSElVqKYiGEGaR  231 (406)
T COG1222         169 LPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQTDATFIRVVGSELVQKYIGEGAR  231 (406)
T ss_pred             ccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhccCceEEEeccHHHHHHHhccchH
Confidence            4555555443   356778999999999999999999999998877764  688877765543

>PRK06620 hypothetical protein; Validated

Probab=97.06  E-value=0.00042  Score=57.12  Aligned_cols=30  Identities=13%  Similarity=0.134  Sum_probs=25.4

Q ss_pred             eEEEEEcCCCCCchHHHHHHHHHhCCCeee
Q 030464           79 VHWAFIGSPRAKKHVYAEMLSKLLEVPRIS  108 (177)
Q Consensus        79 ~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is  108 (177)
                      ..++|.||||||||++++.+++..+..+++
T Consensus        45 ~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~   74 (214)
T PRK06620         45 FTLLIKGPSSSGKTYLTKIWQNLSNAYIIK   74 (214)
T ss_pred             ceEEEECCCCCCHHHHHHHHHhccCCEEcc
Confidence            458999999999999999999888765554

>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]

Probab=97.05  E-value=0.00052  Score=60.80  Aligned_cols=34  Identities=26%  Similarity=0.340  Sum_probs=29.9

Q ss_pred             CCCeEEEEEcCCCCCchHHHHHHHHHhCCCeeeC
Q 030464           76 RRGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISM  109 (177)
Q Consensus        76 ~~~~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~  109 (177)
                      ...-+|+++||.|||||.+|+-||+.+++|+-=.
T Consensus        95 L~KSNILLiGPTGsGKTlLAqTLAk~LnVPFaiA  128 (408)
T COG1219          95 LSKSNILLIGPTGSGKTLLAQTLAKILNVPFAIA  128 (408)
T ss_pred             eeeccEEEECCCCCcHHHHHHHHHHHhCCCeeec
Confidence            4567899999999999999999999999995443

>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=97.03  E-value=0.00062  Score=64.61  Aligned_cols=43  Identities=14%  Similarity=0.146  Sum_probs=35.6

Q ss_pred             cCCCeEEEEEcCCCCCchHHHHHHHHHhCCCeeeCc--hhhhhcc
Q 030464           75 RRRGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMS--SIVRQDL  117 (177)
Q Consensus        75 ~~~~~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~--dLlr~el  117 (177)
                      ...|.-|++.||||||||++|+.||..-+..++++.  +|+.+..
T Consensus       465 i~ppkGVLlyGPPGC~KT~lAkalAne~~~nFlsvkgpEL~sk~v  509 (693)
T KOG0730|consen  465 ISPPKGVLLYGPPGCGKTLLAKALANEAGMNFLSVKGPELFSKYV  509 (693)
T ss_pred             CCCCceEEEECCCCcchHHHHHHHhhhhcCCeeeccCHHHHHHhc
Confidence            357788999999999999999999999999988884  4555433

>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed

Probab=97.02  E-value=0.00067  Score=55.92  Aligned_cols=39  Identities=28%  Similarity=0.371  Sum_probs=30.2

Q ss_pred             cCCCeEEEEEcCCCCCchHHHHHHHHHhCC-----Ce-eeCchhh
Q 030464           75 RRRGVHWAFIGSPRAKKHVYAEMLSKLLEV-----PR-ISMSSIV  113 (177)
Q Consensus        75 ~~~~~~IlIiGpPGSGKSTlA~~LAk~lgl-----~~-Is~~dLl  113 (177)
                      ..++..|.|.|++||||||+++.|+..+.-     .+ +++++..
T Consensus        30 ~~~~~iigi~G~~GsGKTTl~~~L~~~l~~~~g~~~v~i~~D~~~   74 (229)
T PRK09270         30 PQRRTIVGIAGPPGAGKSTLAEFLEALLQQDGELPAIQVPMDGFH   74 (229)
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHHhhhccCCceEEEeccccc
Confidence            457888999999999999999999987642     12 6666543

>PRK06835 DNA replication protein DnaC; Validated

Probab=97.02  E-value=0.001  Score=58.57  Aligned_cols=39  Identities=15%  Similarity=0.184  Sum_probs=32.0

Q ss_pred             CeEEEEEcCCCCCchHHHHHHHHHh-----CCCeeeCchhhhhc
Q 030464           78 GVHWAFIGSPRAKKHVYAEMLSKLL-----EVPRISMSSIVRQD  116 (177)
Q Consensus        78 ~~~IlIiGpPGSGKSTlA~~LAk~l-----gl~~Is~~dLlr~e  116 (177)
                      ...++|.|+||+|||+++..+|+.+     .+.++++.+++...
T Consensus       183 ~~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t~~~l~~~l  226 (329)
T PRK06835        183 NENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRTADELIEIL  226 (329)
T ss_pred             CCcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEEHHHHHHHH
Confidence            3679999999999999999999875     46678887876643

>COG0125 Tmk Thymidylate kinase [Nucleotide transport and metabolism]

Probab=97.01  E-value=0.0028  Score=52.47  Aligned_cols=55  Identities=22%  Similarity=0.340  Sum_probs=40.7

Q ss_pred             CCeEEEEEcCCCCCchHHHHHHHHHhCCCeeeCchhhhhccCCCCchHHHHHHHHHcC
Q 030464           77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRG  134 (177)
Q Consensus        77 ~~~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~dLlr~el~~~s~lgk~i~~~l~~G  134 (177)
                      +++-|+|-|.=||||||+++.|++.+.-..+.+  ++..+ ...+++++.+++.+.++
T Consensus         2 ~g~fI~iEGiDGaGKTT~~~~L~~~l~~~g~~v--~~trE-P~~~~ige~iR~~ll~~   56 (208)
T COG0125           2 KGMFIVIEGIDGAGKTTQAELLKERLEERGIKV--VLTRE-PGGTPIGEKIRELLLNG   56 (208)
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHHHHHcCCeE--EEEeC-CCCChHHHHHHHHHcCC
Confidence            577899999999999999999999874433321  11112 34488999999988876

>PRK12402 replication factor C small subunit 2; Reviewed

Probab=97.01  E-value=0.00068  Score=57.89  Aligned_cols=25  Identities=24%  Similarity=0.282  Sum_probs=22.3

Q ss_pred             eEEEEEcCCCCCchHHHHHHHHHhC
Q 030464           79 VHWAFIGSPRAKKHVYAEMLSKLLE  103 (177)
Q Consensus        79 ~~IlIiGpPGSGKSTlA~~LAk~lg  103 (177)
                      ..++|.||||+||||+|+.+++.+.
T Consensus        37 ~~lll~Gp~GtGKT~la~~~~~~l~   61 (337)
T PRK12402         37 PHLLVQGPPGSGKTAAVRALARELY   61 (337)
T ss_pred             ceEEEECCCCCCHHHHHHHHHHHhc
Confidence            3589999999999999999999863

>PRK13976 thymidylate kinase; Provisional

Probab=97.00  E-value=0.0035  Score=51.60  Aligned_cols=48  Identities=15%  Similarity=0.163  Sum_probs=32.8

Q ss_pred             EEEEEcCCCCCchHHHHHHHHHhCC-----CeeeCchhhhhccCCCCchHHHHHHHHHc
Q 030464           80 HWAFIGSPRAKKHVYAEMLSKLLEV-----PRISMSSIVRQDLSPRSSLHKQIANAVNR  133 (177)
Q Consensus        80 ~IlIiGpPGSGKSTlA~~LAk~lgl-----~~Is~~dLlr~el~~~s~lgk~i~~~l~~  133 (177)
                      -|+|-|.-||||||+++.|++.+.-     .++-+    +  -...+.+++.+++.+..
T Consensus         2 fIv~EGiDGsGKsTq~~~L~~~L~~~~g~~~v~~~----~--eP~~~~~g~~ir~~l~~   54 (209)
T PRK13976          2 FITFEGIDGSGKTTQSRLLAEYLSDIYGENNVVLT----R--EPGGTSFNELVRGLLLS   54 (209)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHhcCCcceEEe----e--CCCCCHHHHHHHHHHcC
Confidence            4889999999999999999998742     11111    1  11245677777777653

>PRK07952 DNA replication protein DnaC; Validated

Probab=97.00  E-value=0.002  Score=54.49  Aligned_cols=36  Identities=25%  Similarity=0.385  Sum_probs=29.1

Q ss_pred             EEEEEcCCCCCchHHHHHHHHHh---C--CCeeeCchhhhh
Q 030464           80 HWAFIGSPRAKKHVYAEMLSKLL---E--VPRISMSSIVRQ  115 (177)
Q Consensus        80 ~IlIiGpPGSGKSTlA~~LAk~l---g--l~~Is~~dLlr~  115 (177)
                      .++|.|+||+|||+++..|+..+   |  +.++++.+++..
T Consensus       101 ~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~it~~~l~~~  141 (244)
T PRK07952        101 SFIFSGKPGTGKNHLAAAICNELLLRGKSVLIITVADIMSA  141 (244)
T ss_pred             eEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEHHHHHHH
Confidence            68999999999999999999876   3  446677777653

>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]

Probab=97.00  E-value=0.00064  Score=60.69  Aligned_cols=40  Identities=28%  Similarity=0.272  Sum_probs=34.1

Q ss_pred             cCcccCCCeEEEEEcCCCCCchHHHHHHHHHhCCCeeeCc
Q 030464           71 EGRERRRGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMS  110 (177)
Q Consensus        71 ~~~~~~~~~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~  110 (177)
                      +.-...-|++|+++||.|+|||..|++||+.-|.|+|-+.
T Consensus        43 ~lr~EV~PKNILMIGpTGVGKTEIARRLAkl~~aPFiKVE   82 (444)
T COG1220          43 ELRDEVTPKNILMIGPTGVGKTEIARRLAKLAGAPFIKVE   82 (444)
T ss_pred             HHhhccCccceEEECCCCCcHHHHHHHHHHHhCCCeEEEE
Confidence            3333457899999999999999999999999999988764

>PRK06893 DNA replication initiation factor; Validated

Probab=96.99  E-value=0.00068  Score=56.11  Aligned_cols=33  Identities=15%  Similarity=0.124  Sum_probs=26.9

Q ss_pred             CeEEEEEcCCCCCchHHHHHHHHHh-----CCCeeeCc
Q 030464           78 GVHWAFIGSPRAKKHVYAEMLSKLL-----EVPRISMS  110 (177)
Q Consensus        78 ~~~IlIiGpPGSGKSTlA~~LAk~l-----gl~~Is~~  110 (177)
                      .+.++|.||||+|||++++.++..+     ++.++++.
T Consensus        39 ~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~~~   76 (229)
T PRK06893         39 QPFFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPLS   76 (229)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEeeHH
Confidence            3457999999999999999999875     56666664

>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]

Probab=96.98  E-value=0.00067  Score=65.23  Aligned_cols=40  Identities=23%  Similarity=0.402  Sum_probs=33.7

Q ss_pred             cCCCeEEEEEcCCCCCchHHHHHHHHHhCCC--eeeCchhhh
Q 030464           75 RRRGVHWAFIGSPRAKKHVYAEMLSKLLEVP--RISMSSIVR  114 (177)
Q Consensus        75 ~~~~~~IlIiGpPGSGKSTlA~~LAk~lgl~--~Is~~dLlr  114 (177)
                      ..++++++|.||||+|||.+++.||..+|-.  .||+|.+-.
T Consensus       435 s~qGkIlCf~GPPGVGKTSI~kSIA~ALnRkFfRfSvGG~tD  476 (906)
T KOG2004|consen  435 SVQGKILCFVGPPGVGKTSIAKSIARALNRKFFRFSVGGMTD  476 (906)
T ss_pred             cCCCcEEEEeCCCCCCcccHHHHHHHHhCCceEEEecccccc
Confidence            3588999999999999999999999999855  567776543

>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]

Probab=96.98  E-value=0.00068  Score=59.15  Aligned_cols=35  Identities=23%  Similarity=0.395  Sum_probs=28.6

Q ss_pred             EEEEEcCCCCCchHHHHHHHHHhCCC-eeeCchhhh
Q 030464           80 HWAFIGSPRAKKHVYAEMLSKLLEVP-RISMSSIVR  114 (177)
Q Consensus        80 ~IlIiGpPGSGKSTlA~~LAk~lgl~-~Is~~dLlr  114 (177)
                      .+++.||||.||||+|..+|+++|+. .+..+-.+.
T Consensus        54 HvLl~GPPGlGKTTLA~IIA~Emgvn~k~tsGp~le   89 (332)
T COG2255          54 HVLLFGPPGLGKTTLAHIIANELGVNLKITSGPALE   89 (332)
T ss_pred             eEEeeCCCCCcHHHHHHHHHHHhcCCeEeccccccc
Confidence            69999999999999999999999876 344444443

>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]

Probab=96.97  E-value=0.0007  Score=61.76  Aligned_cols=35  Identities=17%  Similarity=0.117  Sum_probs=29.9

Q ss_pred             CCeEEEEEcCCCCCchHHHHHHHHHhCCCeeeCch
Q 030464           77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSS  111 (177)
Q Consensus        77 ~~~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~d  111 (177)
                      .+..+++.||||+|||.+|+.+|...+.+++++..
T Consensus       275 ~~~giLl~GpPGtGKT~lAkava~~~~~~fi~v~~  309 (494)
T COG0464         275 PPKGVLLYGPPGTGKTLLAKAVALESRSRFISVKG  309 (494)
T ss_pred             CCCeeEEECCCCCCHHHHHHHHHhhCCCeEEEeeC
Confidence            44479999999999999999999988888777653

>PRK04328 hypothetical protein; Provisional

Probab=96.97  E-value=0.0016  Score=54.73  Aligned_cols=47  Identities=9%  Similarity=0.022  Sum_probs=32.0

Q ss_pred             ccccCccC-cccCCCeEEEEEcCCCCCchHHHHHHHHH---h--CCCeeeCch
Q 030464           65 VTLPDTEG-RERRRGVHWAFIGSPRAKKHVYAEMLSKL---L--EVPRISMSS  111 (177)
Q Consensus        65 ~~~~~~~~-~~~~~~~~IlIiGpPGSGKSTlA~~LAk~---l--gl~~Is~~d  111 (177)
                      .+.++.-. ....++-.++|.|+||+|||++|.+++..   .  .+.++++.+
T Consensus         9 i~~LD~lL~GGip~gs~ili~G~pGsGKT~l~~~fl~~~~~~ge~~lyis~ee   61 (249)
T PRK04328          9 IPGMDEILYGGIPERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGVYVALEE   61 (249)
T ss_pred             chhHHHHhcCCCcCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEEeeC
Confidence            34455432 22357888999999999999999886543   1  345777654

>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model

Probab=96.96  E-value=0.0004  Score=53.79  Aligned_cols=30  Identities=23%  Similarity=0.297  Sum_probs=21.2

Q ss_pred             EEEEEcCCCCCchHHHHHHHHHhCCCeeeC
Q 030464           80 HWAFIGSPRAKKHVYAEMLSKLLEVPRISM  109 (177)
Q Consensus        80 ~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~  109 (177)
                      .|++.|+||+|||++++.||+.+|..+..+
T Consensus         1 HvLleg~PG~GKT~la~~lA~~~~~~f~RI   30 (131)
T PF07726_consen    1 HVLLEGVPGVGKTTLAKALARSLGLSFKRI   30 (131)
T ss_dssp             -EEEES---HHHHHHHHHHHHHTT--EEEE
T ss_pred             CEeeECCCccHHHHHHHHHHHHcCCceeEE
Confidence            378999999999999999999998876544

AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.

>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways

Probab=96.95  E-value=0.00062  Score=53.42  Aligned_cols=24  Identities=21%  Similarity=0.177  Sum_probs=21.3

Q ss_pred             CeEEEEEcCCCCCchHHHHHHHHH
Q 030464           78 GVHWAFIGSPRAKKHVYAEMLSKL  101 (177)
Q Consensus        78 ~~~IlIiGpPGSGKSTlA~~LAk~  101 (177)
                      +.+|+|+|+.||||||++++|-..
T Consensus         1 MkrimliG~~g~GKTTL~q~L~~~   24 (143)
T PF10662_consen    1 MKRIMLIGPSGSGKTTLAQALNGE   24 (143)
T ss_pred             CceEEEECCCCCCHHHHHHHHcCC
Confidence            468999999999999999999664

Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process

>PRK08939 primosomal protein DnaI; Reviewed

Probab=96.94  E-value=0.0028  Score=55.18  Aligned_cols=40  Identities=13%  Similarity=0.116  Sum_probs=32.1

Q ss_pred             CCeEEEEEcCCCCCchHHHHHHHHHh---CC--CeeeCchhhhhc
Q 030464           77 RGVHWAFIGSPRAKKHVYAEMLSKLL---EV--PRISMSSIVRQD  116 (177)
Q Consensus        77 ~~~~IlIiGpPGSGKSTlA~~LAk~l---gl--~~Is~~dLlr~e  116 (177)
                      ....++|.|+||+|||+++..|+..+   |+  .++++.++++..
T Consensus       155 ~~~gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~~~~l~~~l  199 (306)
T PRK08939        155 KVKGLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLHFPEFIREL  199 (306)
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEEHHHHHHHH
Confidence            44679999999999999999998876   44  466777777654

>PF13245 AAA_19: Part of AAA domain

Probab=96.94  E-value=0.00093  Score=46.65  Aligned_cols=25  Identities=24%  Similarity=0.380  Sum_probs=17.4

Q ss_pred             CeEEEEEcCCCCCch-HHHHHHHHHh
Q 030464           78 GVHWAFIGSPRAKKH-VYAEMLSKLL  102 (177)
Q Consensus        78 ~~~IlIiGpPGSGKS-TlA~~LAk~l  102 (177)
                      ....+|.|||||||| +++..++..+
T Consensus        10 ~~~~vv~g~pGtGKT~~~~~~i~~l~   35 (76)
T PF13245_consen   10 SPLFVVQGPPGTGKTTTLAARIAELL   35 (76)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHHH
Confidence            344677999999999 5555555444

>TIGR00763 lon ATP-dependent protease La

Probab=96.94  E-value=0.00078  Score=65.20  Aligned_cols=33  Identities=18%  Similarity=0.350  Sum_probs=28.3

Q ss_pred             CCeEEEEEcCCCCCchHHHHHHHHHhCCCeeeC
Q 030464           77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISM  109 (177)
Q Consensus        77 ~~~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~  109 (177)
                      ++..++|.||||+|||++|+.||+.++.+++.+
T Consensus       346 ~~~~lll~GppG~GKT~lAk~iA~~l~~~~~~i  378 (775)
T TIGR00763       346 KGPILCLVGPPGVGKTSLGKSIAKALNRKFVRF  378 (775)
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHhcCCeEEE
Confidence            445799999999999999999999998776543

This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.

>cd01120 RecA-like_NTPases RecA-like NTPases

Probab=96.91  E-value=0.00072  Score=50.59  Aligned_cols=33  Identities=15%  Similarity=0.117  Sum_probs=25.4

Q ss_pred             EEEEEcCCCCCchHHHHHHHHHh-----CCCeeeCchh
Q 030464           80 HWAFIGSPRAKKHVYAEMLSKLL-----EVPRISMSSI  112 (177)
Q Consensus        80 ~IlIiGpPGSGKSTlA~~LAk~l-----gl~~Is~~dL  112 (177)
                      .++|.|+||+|||+++..++...     .+.+++.+..
T Consensus         1 ~~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~e~~   38 (165)
T cd01120           1 LILVFGPTGSGKTTLALQLALNIATKGGKVVYVDIEEE   38 (165)
T ss_pred             CeeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCcc
Confidence            36899999999999999998775     2446665543

This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.

>cd02026 PRK Phosphoribulokinase (PRK) is an enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes

Probab=96.91  E-value=0.00069  Score=57.96  Aligned_cols=33  Identities=18%  Similarity=0.254  Sum_probs=28.1

Q ss_pred             EEEEcCCCCCchHHHHHHHHHh---CCCeeeCchhh
Q 030464           81 WAFIGSPRAKKHVYAEMLSKLL---EVPRISMSSIV  113 (177)
Q Consensus        81 IlIiGpPGSGKSTlA~~LAk~l---gl~~Is~~dLl  113 (177)
                      |.|+|++||||||+++.|+..+   +..+++.+++.
T Consensus         2 igI~G~sGsGKSTl~~~L~~ll~~~~~~vi~~Dd~~   37 (273)
T cd02026           2 IGVAGDSGCGKSTFLRRLTSLFGSDLVTVICLDDYH   37 (273)
T ss_pred             EEEECCCCCCHHHHHHHHHHhhCCCceEEEECcccc
Confidence            6799999999999999999876   45678888764

This enzyme catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.

>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=96.90  E-value=0.0015  Score=57.78  Aligned_cols=46  Identities=20%  Similarity=0.208  Sum_probs=35.4

Q ss_pred             EEEEEcCCCCCchHHHHHHHHHhCCCeeeC--chhhhhccCCCCchHH
Q 030464           80 HWAFIGSPRAKKHVYAEMLSKLLEVPRISM--SSIVRQDLSPRSSLHK  125 (177)
Q Consensus        80 ~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~--~dLlr~el~~~s~lgk  125 (177)
                      -|++.||||.|||.+|+++|-+-+-.++|+  .||+.+-+.....+-+
T Consensus       168 giLLyGPPGTGKSYLAKAVATEAnSTFFSvSSSDLvSKWmGESEkLVk  215 (439)
T KOG0739|consen  168 GILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGESEKLVK  215 (439)
T ss_pred             eEEEeCCCCCcHHHHHHHHHhhcCCceEEeehHHHHHHHhccHHHHHH
Confidence            478999999999999999999988776665  4788776654444433

>PRK13695 putative NTPase; Provisional

Probab=96.90  E-value=0.00086  Score=52.73  Aligned_cols=24  Identities=21%  Similarity=0.360  Sum_probs=21.5

Q ss_pred             eEEEEEcCCCCCchHHHHHHHHHh
Q 030464           79 VHWAFIGSPRAKKHVYAEMLSKLL  102 (177)
Q Consensus        79 ~~IlIiGpPGSGKSTlA~~LAk~l  102 (177)
                      ++|+|+|+||+||||+++.+++.+
T Consensus         1 ~~i~ltG~~G~GKTTll~~i~~~l   24 (174)
T PRK13695          1 MKIGITGPPGVGKTTLVLKIAELL   24 (174)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHH
Confidence            589999999999999999987764

>PF03215 Rad17: Rad17 cell cycle checkpoint protein

Probab=96.90  E-value=0.00097  Score=62.07  Aligned_cols=32  Identities=16%  Similarity=0.073  Sum_probs=27.5

Q ss_pred             eEEEEEcCCCCCchHHHHHHHHHhCCCeeeCc
Q 030464           79 VHWAFIGSPRAKKHVYAEMLSKLLEVPRISMS  110 (177)
Q Consensus        79 ~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~  110 (177)
                      ...++.|||||||||..+.||+++|+.++...
T Consensus        46 ~iLlLtGP~G~GKtttv~~La~elg~~v~Ew~   77 (519)
T PF03215_consen   46 RILLLTGPSGCGKTTTVKVLAKELGFEVQEWI   77 (519)
T ss_pred             ceEEEECCCCCCHHHHHHHHHHHhCCeeEEec
Confidence            35678899999999999999999998877643

>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family

Probab=96.89  E-value=0.0022  Score=52.33  Aligned_cols=38  Identities=18%  Similarity=0.215  Sum_probs=28.5

Q ss_pred             ccCCCeEEEEEcCCCCCchHHHHHHHHHh-----CCCeeeCch
Q 030464           74 ERRRGVHWAFIGSPRAKKHVYAEMLSKLL-----EVPRISMSS  111 (177)
Q Consensus        74 ~~~~~~~IlIiGpPGSGKSTlA~~LAk~l-----gl~~Is~~d  111 (177)
                      ...++-.++|.|+||+|||+++..++...     ++.+++...
T Consensus        16 Gi~~G~~~~i~G~~G~GKT~l~~~~~~~~~~~g~~~~~is~e~   58 (229)
T TIGR03881        16 GIPRGFFVAVTGEPGTGKTIFCLHFAYKGLRDGDPVIYVTTEE   58 (229)
T ss_pred             CCcCCeEEEEECCCCCChHHHHHHHHHHHHhcCCeEEEEEccC
Confidence            44578889999999999999998775421     355677644

Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.

>PRK08084 DNA replication initiation factor; Provisional

Probab=96.89  E-value=0.00068  Score=56.36  Aligned_cols=33  Identities=9%  Similarity=-0.033  Sum_probs=26.3

Q ss_pred             eEEEEEcCCCCCchHHHHHHHHHhC-----CCeeeCch
Q 030464           79 VHWAFIGSPRAKKHVYAEMLSKLLE-----VPRISMSS  111 (177)
Q Consensus        79 ~~IlIiGpPGSGKSTlA~~LAk~lg-----l~~Is~~d  111 (177)
                      ..++|.||||+|||++++.++....     +.++++++
T Consensus        46 ~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~~~~   83 (235)
T PRK08084         46 GYIYLWSREGAGRSHLLHAACAELSQRGRAVGYVPLDK   83 (235)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEHHH
Confidence            4689999999999999999987653     45666654

>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=96.88  E-value=0.0028  Score=61.10  Aligned_cols=54  Identities=13%  Similarity=0.103  Sum_probs=41.8

Q ss_pred             ccccCccCcccCCCeEEEEEcCCCCCchHHHHHHHHHhCCCeeeCc--hhhhhccCC
Q 030464           65 VTLPDTEGRERRRGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMS--SIVRQDLSP  119 (177)
Q Consensus        65 ~~~~~~~~~~~~~~~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~--dLlr~el~~  119 (177)
                      +|.....++- .-+..|++.||||||||.+|.++|...++.+||+.  +|+.+.+.+
T Consensus       689 yp~if~~~pl-r~~~giLLyGppGcGKT~la~a~a~~~~~~fisvKGPElL~KyIGa  744 (952)
T KOG0735|consen  689 YPQIFANCPL-RLRTGILLYGPPGCGKTLLASAIASNSNLRFISVKGPELLSKYIGA  744 (952)
T ss_pred             chHHHhhCCc-ccccceEEECCCCCcHHHHHHHHHhhCCeeEEEecCHHHHHHHhcc
Confidence            3444443333 24457999999999999999999999999999997  588777654

>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional

Probab=96.88  E-value=0.00084  Score=63.45  Aligned_cols=42  Identities=19%  Similarity=0.226  Sum_probs=33.3

Q ss_pred             CCCeEEEEEcCCCCCchHHHHHHHHHh-----CCCeeeCchhhhhccC
Q 030464           76 RRGVHWAFIGSPRAKKHVYAEMLSKLL-----EVPRISMSSIVRQDLS  118 (177)
Q Consensus        76 ~~~~~IlIiGpPGSGKSTlA~~LAk~l-----gl~~Is~~dLlr~el~  118 (177)
                      .++..|+++|.|||||||+|+.|++.+     ++.+++- |.+|+.+.
T Consensus       458 ~~~~~i~~~G~~gsGKst~a~~l~~~l~~~~~~~~~l~~-D~~r~~l~  504 (632)
T PRK05506        458 QKPATVWFTGLSGSGKSTIANLVERRLHALGRHTYLLDG-DNVRHGLN  504 (632)
T ss_pred             CCcEEEEecCCCCchHHHHHHHHHHHHHHcCCCEEEEcC-hhhhhccC
Confidence            467889999999999999999999986     3466775 55666554

>cd04163 Era Era subfamily

Probab=96.87  E-value=0.00096  Score=49.56  Aligned_cols=25  Identities=20%  Similarity=0.258  Sum_probs=21.7

Q ss_pred             CCeEEEEEcCCCCCchHHHHHHHHH
Q 030464           77 RGVHWAFIGSPRAKKHVYAEMLSKL  101 (177)
Q Consensus        77 ~~~~IlIiGpPGSGKSTlA~~LAk~  101 (177)
                      ...+|+|+|+||+||||++..+...
T Consensus         2 ~~~~i~~~G~~g~GKttl~~~l~~~   26 (168)
T cd04163           2 KSGFVAIVGRPNVGKSTLLNALVGQ   26 (168)
T ss_pred             ceeEEEEECCCCCCHHHHHHHHhCC
Confidence            4578999999999999999998654

Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.

>PLN03046 D-glycerate 3-kinase; Provisional

Probab=96.86  E-value=0.001  Score=60.82  Aligned_cols=38  Identities=13%  Similarity=0.113  Sum_probs=31.8

Q ss_pred             CCCeEEEEEcCCCCCchHHHHHHHHHhC-----CCeeeCchhh
Q 030464           76 RRGVHWAFIGSPRAKKHVYAEMLSKLLE-----VPRISMSSIV  113 (177)
Q Consensus        76 ~~~~~IlIiGpPGSGKSTlA~~LAk~lg-----l~~Is~~dLl  113 (177)
                      .++..|.|.|++||||||+++.|...+.     +..|++++..
T Consensus       210 ~~PlIIGIsG~qGSGKSTLa~~L~~lL~~~g~~vgvISiDDfY  252 (460)
T PLN03046        210 IPPLVIGFSAPQGCGKTTLVFALDYLFRVTGRKSATLSIDDFY  252 (460)
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHhcccCCceEEEEECCcc
Confidence            3678889999999999999999977652     5678888876

>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=96.85  E-value=0.00082  Score=63.75  Aligned_cols=41  Identities=15%  Similarity=0.185  Sum_probs=35.0

Q ss_pred             CeEEEEEcCCCCCchHHHHHHHHHhCCCeeeCc--hhhhhccC
Q 030464           78 GVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMS--SIVRQDLS  118 (177)
Q Consensus        78 ~~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~--dLlr~el~  118 (177)
                      |--|++.||||||||-+|+++|.+-|+.+|++.  +|+.+.+.
T Consensus       545 PsGvLL~GPPGCGKTLlAKAVANEag~NFisVKGPELlNkYVG  587 (802)
T KOG0733|consen  545 PSGVLLCGPPGCGKTLLAKAVANEAGANFISVKGPELLNKYVG  587 (802)
T ss_pred             CCceEEeCCCCccHHHHHHHHhhhccCceEeecCHHHHHHHhh
Confidence            446999999999999999999999999999987  47766543

>CHL00206 ycf2 Ycf2; Provisional

Probab=96.84  E-value=0.00092  Score=69.91  Aligned_cols=38  Identities=18%  Similarity=0.147  Sum_probs=32.1

Q ss_pred             CCeEEEEEcCCCCCchHHHHHHHHHhCCCeeeCc--hhhh
Q 030464           77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMS--SIVR  114 (177)
Q Consensus        77 ~~~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~--dLlr  114 (177)
                      .+.-|+++||||+|||.+|++||...+++.|++.  +++.
T Consensus      1629 pPKGILLiGPPGTGKTlLAKALA~es~VPFIsISgs~fl~ 1668 (2281)
T CHL00206       1629 PSRGILVIGSIGTGRSYLVKYLATNSYVPFITVFLNKFLD 1668 (2281)
T ss_pred             CCCceEEECCCCCCHHHHHHHHHHhcCCceEEEEHHHHhh
Confidence            4557999999999999999999999999866654  5664

>cd01131 PilT Pilus retraction ATPase PilT

Probab=96.84  E-value=0.0017  Score=52.61  Aligned_cols=24  Identities=8%  Similarity=0.062  Sum_probs=20.7

Q ss_pred             EEEEEcCCCCCchHHHHHHHHHhC
Q 030464           80 HWAFIGSPRAKKHVYAEMLSKLLE  103 (177)
Q Consensus        80 ~IlIiGpPGSGKSTlA~~LAk~lg  103 (177)
                      .|+|.||+||||||+...|...+.
T Consensus         3 lilI~GptGSGKTTll~~ll~~~~   26 (198)
T cd01131           3 LVLVTGPTGSGKSTTLAAMIDYIN   26 (198)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhh
Confidence            378999999999999998877663

PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.

>TIGR00678 holB DNA polymerase III, delta' subunit

Probab=96.84  E-value=0.0037  Score=49.64  Aligned_cols=28  Identities=25%  Similarity=0.260  Sum_probs=24.4

Q ss_pred             CCeEEEEEcCCCCCchHHHHHHHHHhCC
Q 030464           77 RGVHWAFIGSPRAKKHVYAEMLSKLLEV  104 (177)
Q Consensus        77 ~~~~IlIiGpPGSGKSTlA~~LAk~lgl  104 (177)
                      -+..++|.||||+||+++|+.+++.+..
T Consensus        13 ~~~~~L~~G~~G~gkt~~a~~~~~~l~~   40 (188)
T TIGR00678        13 LAHAYLFAGPEGVGKELLALALAKALLC   40 (188)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHcC
Confidence            3467999999999999999999998754

At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.

>COG4639 Predicted kinase [General function prediction only]

Probab=96.84  E-value=0.0045  Score=49.65  Aligned_cols=32  Identities=16%  Similarity=0.253  Sum_probs=25.0

Q ss_pred             eEEEEEcCCCCCchHHHHHHHHHhCCCeeeCchh
Q 030464           79 VHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSI  112 (177)
Q Consensus        79 ~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~dL  112 (177)
                      .-++++|+|||||||+|+..  ......++++++
T Consensus         3 ~LvvL~G~~~sGKsT~ak~n--~~~~~~lsld~~   34 (168)
T COG4639           3 ILVVLRGASGSGKSTFAKEN--FLQNYVLSLDDL   34 (168)
T ss_pred             eEEEEecCCCCchhHHHHHh--CCCcceecHHHH
Confidence            45789999999999999863  346778887664

>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2

Probab=96.84  E-value=0.0012  Score=52.47  Aligned_cols=26  Identities=15%  Similarity=0.169  Sum_probs=22.7

Q ss_pred             CeEEEEEcCCCCCchHHHHHHHHHhC
Q 030464           78 GVHWAFIGSPRAKKHVYAEMLSKLLE  103 (177)
Q Consensus        78 ~~~IlIiGpPGSGKSTlA~~LAk~lg  103 (177)
                      +..|+|+||+||||+|++++|.+.+.
T Consensus         2 ~r~ivl~Gpsg~GK~~l~~~L~~~~~   27 (183)
T PF00625_consen    2 RRPIVLVGPSGSGKSTLAKRLIQEFP   27 (183)
T ss_dssp             SSEEEEESSTTSSHHHHHHHHHHHST
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHhcc
Confidence            44688999999999999999998764

7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....

>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily

Probab=96.83  E-value=0.0011  Score=63.58  Aligned_cols=34  Identities=18%  Similarity=0.148  Sum_probs=29.0

Q ss_pred             CCeEEEEEcCCCCCchHHHHHHHHHhCCCeeeCc
Q 030464           77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMS  110 (177)
Q Consensus        77 ~~~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~  110 (177)
                      .+..|+|.||||+|||++++.||+.++.+++.+.
T Consensus       211 ~~~giLL~GppGtGKT~laraia~~~~~~~i~i~  244 (733)
T TIGR01243       211 PPKGVLLYGPPGTGKTLLAKAVANEAGAYFISIN  244 (733)
T ss_pred             CCceEEEECCCCCChHHHHHHHHHHhCCeEEEEe
Confidence            4457899999999999999999999988766553

This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.

>PRK12723 flagellar biosynthesis regulator FlhF; Provisional

Probab=96.83  E-value=0.0035  Score=56.42  Aligned_cols=26  Identities=12%  Similarity=0.218  Sum_probs=23.2

Q ss_pred             CCeEEEEEcCCCCCchHHHHHHHHHh
Q 030464           77 RGVHWAFIGSPRAKKHVYAEMLSKLL  102 (177)
Q Consensus        77 ~~~~IlIiGpPGSGKSTlA~~LAk~l  102 (177)
                      ++..|+++||+|+||||.+..||..+
T Consensus       173 ~~~vi~lvGptGvGKTTT~aKLA~~~  198 (388)
T PRK12723        173 KKRVFILVGPTGVGKTTTIAKLAAIY  198 (388)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            46788999999999999999999765

>TIGR03689 pup_AAA proteasome ATPase

Probab=96.82  E-value=0.00093  Score=62.12  Aligned_cols=29  Identities=17%  Similarity=0.174  Sum_probs=25.3

Q ss_pred             CCeEEEEEcCCCCCchHHHHHHHHHhCCC
Q 030464           77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVP  105 (177)
Q Consensus        77 ~~~~IlIiGpPGSGKSTlA~~LAk~lgl~  105 (177)
                      .+..|+|.||||+|||++|+.+|+.++..
T Consensus       215 ~p~GILLyGPPGTGKT~LAKAlA~eL~~~  243 (512)
T TIGR03689       215 PPKGVLLYGPPGCGKTLIAKAVANSLAQR  243 (512)
T ss_pred             CCcceEEECCCCCcHHHHHHHHHHhhccc
Confidence            35569999999999999999999998654

In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.

>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]

Probab=96.81  E-value=0.0068  Score=52.95  Aligned_cols=45  Identities=20%  Similarity=0.211  Sum_probs=35.8

Q ss_pred             CcccCCCeEEEEEcCCCCCchHHHHHHHHHh-----CCCeeeCchhhhhc
Q 030464           72 GRERRRGVHWAFIGSPRAKKHVYAEMLSKLL-----EVPRISMSSIVRQD  116 (177)
Q Consensus        72 ~~~~~~~~~IlIiGpPGSGKSTlA~~LAk~l-----gl~~Is~~dLlr~e  116 (177)
                      +..+.+++.|+++|..||||||++++|-..+     .-.+|+++-.+++.
T Consensus        13 ~~~~~~p~~ilVvGMAGSGKTTF~QrL~~hl~~~~~ppYviNLDPAv~~v   62 (366)
T KOG1532|consen   13 SGAIQRPVIILVVGMAGSGKTTFMQRLNSHLHAKKTPPYVINLDPAVRNV   62 (366)
T ss_pred             cccccCCcEEEEEecCCCCchhHHHHHHHHHhhccCCCeEEeCCHHHhcC
Confidence            5667899999999999999999999985543     24478888777664

>PLN03025 replication factor C subunit; Provisional

Probab=96.80  E-value=0.0012  Score=57.20  Aligned_cols=25  Identities=20%  Similarity=0.153  Sum_probs=22.6

Q ss_pred             CeEEEEEcCCCCCchHHHHHHHHHh
Q 030464           78 GVHWAFIGSPRAKKHVYAEMLSKLL  102 (177)
Q Consensus        78 ~~~IlIiGpPGSGKSTlA~~LAk~l  102 (177)
                      .+.++|.||||+||||+|+.+|+.+
T Consensus        34 ~~~lll~Gp~G~GKTtla~~la~~l   58 (319)
T PLN03025         34 MPNLILSGPPGTGKTTSILALAHEL   58 (319)
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHH
Confidence            3468999999999999999999986

>COG0714 MoxR-like ATPases [General function prediction only]

Probab=96.80  E-value=0.0011  Score=57.57  Aligned_cols=33  Identities=27%  Similarity=0.456  Sum_probs=28.0

Q ss_pred             CCeEEEEEcCCCCCchHHHHHHHHHhCCCeeeC
Q 030464           77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISM  109 (177)
Q Consensus        77 ~~~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~  109 (177)
                      .+-.++|.|+||+|||++++.+|+.++.+++.+
T Consensus        42 ~~~~vll~G~PG~gKT~la~~lA~~l~~~~~~i   74 (329)
T COG0714          42 AGGHVLLEGPPGVGKTLLARALARALGLPFVRI   74 (329)
T ss_pred             cCCCEEEECCCCccHHHHHHHHHHHhCCCeEEE
Confidence            445699999999999999999999998765443

>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional

Probab=96.79  E-value=0.0015  Score=63.32  Aligned_cols=34  Identities=24%  Similarity=0.317  Sum_probs=28.0

Q ss_pred             CCCe-EEEEEcCCCCCchHHHHHHHHHhCCCeeeC
Q 030464           76 RRGV-HWAFIGSPRAKKHVYAEMLSKLLEVPRISM  109 (177)
Q Consensus        76 ~~~~-~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~  109 (177)
                      .+|. .++|+||||+|||++|+.||+.++.+++.+
T Consensus       485 ~kp~~~~Lf~GP~GvGKT~lAk~LA~~l~~~~i~i  519 (758)
T PRK11034        485 HKPVGSFLFAGPTGVGKTEVTVQLSKALGIELLRF  519 (758)
T ss_pred             CCCcceEEEECCCCCCHHHHHHHHHHHhCCCcEEe
Confidence            4554 588999999999999999999998775543

>PF13189 Cytidylate_kin2: Cytidylate kinase-like family; PDB: 3FDI_A

Probab=96.78  E-value=0.0037  Score=49.87  Aligned_cols=38  Identities=16%  Similarity=0.093  Sum_probs=29.5

Q ss_pred             EEEEEcCCCCCchHHHHHHHHHhCCCeeeCchhhhhccC
Q 030464           80 HWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLS  118 (177)
Q Consensus        80 ~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~dLlr~el~  118 (177)
                      +|.|.+..|||++++|++||+++|+++++- +++.+...
T Consensus         1 IITIsr~~Gsgg~~Ia~~LA~~Lg~~~~d~-~ii~~~a~   38 (179)
T PF13189_consen    1 IITISRQYGSGGREIAERLAEKLGYPYYDR-EIIEEAAK   38 (179)
T ss_dssp             EEEEEE-TTSSHHHHHHHHHHHCT--EE-H-HHHHHCT-
T ss_pred             CEEECCCCCCChHHHHHHHHHHcCCccCCH-HHHHHHHH
Confidence            478899999999999999999999999997 88877554

>PLN02318 phosphoribulokinase/uridine kinase

Probab=96.78  E-value=0.0012  Score=62.65  Aligned_cols=36  Identities=22%  Similarity=0.306  Sum_probs=30.7

Q ss_pred             CCeEEEEEcCCCCCchHHHHHHHHHh-CCCeeeCchh
Q 030464           77 RGVHWAFIGSPRAKKHVYAEMLSKLL-EVPRISMSSI  112 (177)
Q Consensus        77 ~~~~IlIiGpPGSGKSTlA~~LAk~l-gl~~Is~~dL  112 (177)
                      ..+.|.|.|++||||||+|+.|+..+ +...|++++.
T Consensus        64 ~riIIGIaGpSGSGKTTLAk~LaglLp~vgvIsmDdy  100 (656)
T PLN02318         64 GIILVGVAGPSGAGKTVFTEKVLNFMPSIAVISMDNY  100 (656)
T ss_pred             CeEEEEEECCCCCcHHHHHHHHHhhCCCcEEEEEcce
Confidence            45788899999999999999999987 4568888775

>PRK14961 DNA polymerase III subunits gamma and tau; Provisional

Probab=96.77  E-value=0.0013  Score=58.09  Aligned_cols=27  Identities=26%  Similarity=0.410  Sum_probs=24.1

Q ss_pred             CeEEEEEcCCCCCchHHHHHHHHHhCC
Q 030464           78 GVHWAFIGSPRAKKHVYAEMLSKLLEV  104 (177)
Q Consensus        78 ~~~IlIiGpPGSGKSTlA~~LAk~lgl  104 (177)
                      +.-++|.||||+||||+|+.+++.+++
T Consensus        38 ~h~~L~~Gp~G~GKTtla~~la~~l~c   64 (363)
T PRK14961         38 HHAWLLSGTRGVGKTTIARLLAKSLNC   64 (363)
T ss_pred             CeEEEEecCCCCCHHHHHHHHHHHhcC
Confidence            455799999999999999999999875

>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins

Probab=96.77  E-value=0.0017  Score=49.99  Aligned_cols=29  Identities=17%  Similarity=0.319  Sum_probs=26.6

Q ss_pred             ccCCCeEEEEEcCCCCCchHHHHHHHHHh
Q 030464           74 ERRRGVHWAFIGSPRAKKHVYAEMLSKLL  102 (177)
Q Consensus        74 ~~~~~~~IlIiGpPGSGKSTlA~~LAk~l  102 (177)
                      .|.||+.+.+.|+||+||+.+++.||+.+
T Consensus        49 ~p~KpLVlSfHG~tGtGKn~v~~liA~~l   77 (127)
T PF06309_consen   49 NPRKPLVLSFHGWTGTGKNFVSRLIAEHL   77 (127)
T ss_pred             CCCCCEEEEeecCCCCcHHHHHHHHHHHH
Confidence            56899999999999999999999999973

Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor

>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional

Probab=96.77  E-value=0.0019  Score=59.26  Aligned_cols=28  Identities=25%  Similarity=0.201  Sum_probs=24.7

Q ss_pred             CCeEEEEEcCCCCCchHHHHHHHHHhCC
Q 030464           77 RGVHWAFIGSPRAKKHVYAEMLSKLLEV  104 (177)
Q Consensus        77 ~~~~IlIiGpPGSGKSTlA~~LAk~lgl  104 (177)
                      .+..|++.|+||+|||++|++||+.++.
T Consensus       193 ~~~~iil~GppGtGKT~lA~~la~~l~~  220 (459)
T PRK11331        193 IKKNIILQGPPGVGKTFVARRLAYLLTG  220 (459)
T ss_pred             cCCCEEEECCCCCCHHHHHHHHHHHhcC
Confidence            4568999999999999999999998753

>PRK04301 radA DNA repair and recombination protein RadA; Validated

Probab=96.76  E-value=0.0078  Score=52.11  Aligned_cols=38  Identities=13%  Similarity=0.025  Sum_probs=30.0

Q ss_pred             ccCCCeEEEEEcCCCCCchHHHHHHHHHh-----------CCCeeeCch
Q 030464           74 ERRRGVHWAFIGSPRAKKHVYAEMLSKLL-----------EVPRISMSS  111 (177)
Q Consensus        74 ~~~~~~~IlIiGpPGSGKSTlA~~LAk~l-----------gl~~Is~~d  111 (177)
                      ...++..+.|.|+||||||++|.+++-..           .+.+|+..+
T Consensus        98 Gi~~g~vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~te~  146 (317)
T PRK04301         98 GIETQSITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYIDTEG  146 (317)
T ss_pred             CccCCcEEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEEeCCC
Confidence            44578889999999999999999998652           455777654

>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A

Probab=96.75  E-value=0.0012  Score=51.02  Aligned_cols=27  Identities=15%  Similarity=0.085  Sum_probs=17.6

Q ss_pred             CCCeEEEEEcCCCCCchHHHHHHHHHh
Q 030464           76 RRGVHWAFIGSPRAKKHVYAEMLSKLL  102 (177)
Q Consensus        76 ~~~~~IlIiGpPGSGKSTlA~~LAk~l  102 (177)
                      ..+..++|.|++|+|||++.+++.+.+
T Consensus        22 ~~~~~~ll~G~~G~GKT~ll~~~~~~~   48 (185)
T PF13191_consen   22 GSPRNLLLTGESGSGKTSLLRALLDRL   48 (185)
T ss_dssp             -----EEE-B-TTSSHHHHHHHHHHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence            456789999999999999999876654

>PRK14962 DNA polymerase III subunits gamma and tau; Provisional

Probab=96.73  E-value=0.0014  Score=60.32  Aligned_cols=28  Identities=25%  Similarity=0.351  Sum_probs=24.6

Q ss_pred             CeEEEEEcCCCCCchHHHHHHHHHhCCC
Q 030464           78 GVHWAFIGSPRAKKHVYAEMLSKLLEVP  105 (177)
Q Consensus        78 ~~~IlIiGpPGSGKSTlA~~LAk~lgl~  105 (177)
                      +..++|.||||+||||+|+.+|+.++..
T Consensus        36 ~~~~Lf~GPpGtGKTTlA~~lA~~l~~~   63 (472)
T PRK14962         36 SHAYIFAGPRGTGKTTVARILAKSLNCE   63 (472)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHhccc
Confidence            4558999999999999999999998763

>cd04155 Arl3 Arl3 subfamily

Probab=96.72  E-value=0.0013  Score=50.45  Aligned_cols=26  Identities=15%  Similarity=0.105  Sum_probs=23.1

Q ss_pred             CCCeEEEEEcCCCCCchHHHHHHHHH
Q 030464           76 RRGVHWAFIGSPRAKKHVYAEMLSKL  101 (177)
Q Consensus        76 ~~~~~IlIiGpPGSGKSTlA~~LAk~  101 (177)
                      .+..+|+|+|++|+||||+.+.|...
T Consensus        12 ~~~~~v~i~G~~g~GKStLl~~l~~~   37 (173)
T cd04155          12 SEEPRILILGLDNAGKTTILKQLASE   37 (173)
T ss_pred             CCccEEEEEccCCCCHHHHHHHHhcC
Confidence            34788999999999999999999874

Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.

>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX

Probab=96.71  E-value=0.0011  Score=55.01  Aligned_cols=32  Identities=31%  Similarity=0.554  Sum_probs=22.2

Q ss_pred             CeEEEEEcCCCCCchHHHHHHHHHhCCCeeeCch
Q 030464           78 GVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSS  111 (177)
Q Consensus        78 ~~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~d  111 (177)
                      +..++|+|+||+|||++|+++...  ++-++..+
T Consensus        22 ~h~lLl~GppGtGKTmlA~~l~~l--LP~l~~~e   53 (206)
T PF01078_consen   22 GHHLLLIGPPGTGKTMLARRLPSL--LPPLTEEE   53 (206)
T ss_dssp             C--EEEES-CCCTHHHHHHHHHHC--S--CCEEC
T ss_pred             CCCeEEECCCCCCHHHHHHHHHHh--CCCCchHH
Confidence            468999999999999999999876  44444444

This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.

>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA

Probab=96.71  E-value=0.0016  Score=62.66  Aligned_cols=38  Identities=29%  Similarity=0.387  Sum_probs=29.6

Q ss_pred             cCCCe-EEEEEcCCCCCchHHHHHHHHHhCCC--eeeCchh
Q 030464           75 RRRGV-HWAFIGSPRAKKHVYAEMLSKLLEVP--RISMSSI  112 (177)
Q Consensus        75 ~~~~~-~IlIiGpPGSGKSTlA~~LAk~lgl~--~Is~~dL  112 (177)
                      +.+|. .++|+||||+|||++|+.||+.++..  .+++.+.
T Consensus       480 ~~~p~~~~lf~Gp~GvGKT~lA~~la~~l~~~~~~~d~se~  520 (731)
T TIGR02639       480 PNKPVGSFLFTGPTGVGKTELAKQLAEALGVHLERFDMSEY  520 (731)
T ss_pred             CCCCceeEEEECCCCccHHHHHHHHHHHhcCCeEEEeCchh
Confidence            34555 47899999999999999999999765  4455443

>PRK12323 DNA polymerase III subunits gamma and tau; Provisional

Probab=96.70  E-value=0.0052  Score=58.90  Aligned_cols=28  Identities=21%  Similarity=0.312  Sum_probs=25.1

Q ss_pred             CCeEEEEEcCCCCCchHHHHHHHHHhCC
Q 030464           77 RGVHWAFIGSPRAKKHVYAEMLSKLLEV  104 (177)
Q Consensus        77 ~~~~IlIiGpPGSGKSTlA~~LAk~lgl  104 (177)
                      .+.-++|.|++|+||||+|+.|++.+++
T Consensus        37 LpHA~LFtGP~GvGKTTLAriLAkaLnC   64 (700)
T PRK12323         37 LHHAYLFTGTRGVGKTTLSRILAKSLNC   64 (700)
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHHhcC
Confidence            3456899999999999999999999987

>cd04119 RJL RJL (RabJ-Like) subfamily

Probab=96.69  E-value=0.0014  Score=49.37  Aligned_cols=23  Identities=9%  Similarity=0.057  Sum_probs=20.8

Q ss_pred             eEEEEEcCCCCCchHHHHHHHHH
Q 030464           79 VHWAFIGSPRAKKHVYAEMLSKL  101 (177)
Q Consensus        79 ~~IlIiGpPGSGKSTlA~~LAk~  101 (177)
                      ++|+|+|+||+|||++..++...
T Consensus         1 ~ki~~vG~~~vGKTsli~~l~~~   23 (168)
T cd04119           1 IKVISMGNSGVGKSCIIKRYCEG   23 (168)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhC
Confidence            47999999999999999999764

RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.

>PRK09302 circadian clock protein KaiC; Reviewed

Probab=96.68  E-value=0.0026  Score=58.42  Aligned_cols=89  Identities=13%  Similarity=0.109  Sum_probs=49.9

Q ss_pred             cCCCeEEEEEcCCCCCchHHHHHHHHHh-----CCCeeeCchhhhhccCCCCchHHHHHHHHHcCCcc-----hH----H
Q 030464           75 RRRGVHWAFIGSPRAKKHVYAEMLSKLL-----EVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVV-----SE----D  140 (177)
Q Consensus        75 ~~~~~~IlIiGpPGSGKSTlA~~LAk~l-----gl~~Is~~dLlr~el~~~s~lgk~i~~~l~~G~~I-----pd----e  140 (177)
                      ..++-.++|.|+||+|||+++..++...     .+.++++.+-..+.+..-..+|-.+.+....|...     |+    +
T Consensus       270 ~~~g~~~li~G~~G~GKT~l~~~~~~~~~~~g~~~~yis~e~~~~~i~~~~~~~g~~~~~~~~~g~l~i~~~~~~~~~~~  349 (509)
T PRK09302        270 FFRGSIILVSGATGTGKTLLASKFAEAACRRGERCLLFAFEESRAQLIRNARSWGIDLEKMEEKGLLKIICARPESYGLE  349 (509)
T ss_pred             CCCCcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEEecCCHHHHHHHHHHcCCChHHHhhcCCceeecCCcccCCHH
Confidence            3467788999999999999998886543     56677776433322211112222233344444321     11    1


Q ss_pred             HHHHHHHHHHHccCCCCcceEEEeCC
Q 030464          141 IIFGLLSKRLEDGYYRGEIGFILDGL  166 (177)
Q Consensus       141 li~~Ll~~~L~~~~~~~~~G~ILDGf  166 (177)
                      -....+...+.+..   .+-+|||++
T Consensus       350 ~~~~~i~~~i~~~~---~~~vVIDsl  372 (509)
T PRK09302        350 DHLIIIKREIEEFK---PSRVAIDPL  372 (509)
T ss_pred             HHHHHHHHHHHHcC---CCEEEEcCH
Confidence            22334445555543   457999986

>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]

Probab=96.67  E-value=0.0017  Score=58.33  Aligned_cols=43  Identities=26%  Similarity=0.318  Sum_probs=33.7

Q ss_pred             CCeEEEEEcCCCCCchHHHHHHHHHhC--CCee--eCchhhhhccCC
Q 030464           77 RGVHWAFIGSPRAKKHVYAEMLSKLLE--VPRI--SMSSIVRQDLSP  119 (177)
Q Consensus        77 ~~~~IlIiGpPGSGKSTlA~~LAk~lg--l~~I--s~~dLlr~el~~  119 (177)
                      -+.-|+|.||||+|||.+|-.+|+.+|  +|++  +-++++..++.+
T Consensus        64 aGrgiLi~GppgTGKTAlA~gIa~eLG~dvPF~~isgsEiYS~E~kK  110 (450)
T COG1224          64 AGRGILIVGPPGTGKTALAMGIARELGEDVPFVAISGSEIYSLEVKK  110 (450)
T ss_pred             cccEEEEECCCCCcHHHHHHHHHHHhCCCCCceeeccceeeeecccH
Confidence            456799999999999999999999997  5554  445677666554

>PRK10787 DNA-binding ATP-dependent protease La; Provisional

Probab=96.67  E-value=0.0017  Score=63.11  Aligned_cols=33  Identities=18%  Similarity=0.326  Sum_probs=28.6

Q ss_pred             CCeEEEEEcCCCCCchHHHHHHHHHhCCCeeeC
Q 030464           77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISM  109 (177)
Q Consensus        77 ~~~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~  109 (177)
                      ++..++|+||||+||||+++.+|+.++.+++.+
T Consensus       348 ~g~~i~l~GppG~GKTtl~~~ia~~l~~~~~~i  380 (784)
T PRK10787        348 KGPILCLVGPPGVGKTSLGQSIAKATGRKYVRM  380 (784)
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHhCCCEEEE
Confidence            556799999999999999999999999886443

>PF13479 AAA_24: AAA domain

Probab=96.67  E-value=0.0013  Score=53.86  Aligned_cols=32  Identities=19%  Similarity=0.212  Sum_probs=25.3

Q ss_pred             CCeEEEEEcCCCCCchHHHHHHHHHhCCCeeeCch
Q 030464           77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSS  111 (177)
Q Consensus        77 ~~~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~d  111 (177)
                      ++++++|.|+||+||||+|..+   -+.-+|+++.
T Consensus         2 ~~~~~lIyG~~G~GKTt~a~~~---~k~l~id~E~   33 (213)
T PF13479_consen    2 KPIKILIYGPPGSGKTTLAASL---PKPLFIDTEN   33 (213)
T ss_pred             CceEEEEECCCCCCHHHHHHhC---CCeEEEEeCC
Confidence            5789999999999999999887   2344566543

>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]

Probab=96.67  E-value=0.0039  Score=51.13  Aligned_cols=37  Identities=22%  Similarity=0.224  Sum_probs=29.4

Q ss_pred             CCeEEEEEcCCCCCchHHHHHHHHHhCCCeeeCchhhh
Q 030464           77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVR  114 (177)
Q Consensus        77 ~~~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~dLlr  114 (177)
                      ++..++|.||+|+||||+++.|-+.. -.++|+..--|
T Consensus         3 ~G~l~vlsgPSG~GKsTl~k~L~~~~-~l~~SVS~TTR   39 (191)
T COG0194           3 KGLLIVLSGPSGVGKSTLVKALLEDD-KLRFSVSATTR   39 (191)
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhhc-CeEEEEEeccC
Confidence            67889999999999999999998887 34455554333

>TIGR02655 circ_KaiC circadian clock protein KaiC

Probab=96.67  E-value=0.0031  Score=57.90  Aligned_cols=47  Identities=9%  Similarity=-0.013  Sum_probs=33.2

Q ss_pred             ccccCccC-cccCCCeEEEEEcCCCCCchHHHHHHHH----Hh--CCCeeeCch
Q 030464           65 VTLPDTEG-RERRRGVHWAFIGSPRAKKHVYAEMLSK----LL--EVPRISMSS  111 (177)
Q Consensus        65 ~~~~~~~~-~~~~~~~~IlIiGpPGSGKSTlA~~LAk----~l--gl~~Is~~d  111 (177)
                      .+.+|.-. ....++-.++|.|+||+|||++|.+++.    +.  .+.+|+..+
T Consensus         7 I~gLD~il~GGlp~g~~~Li~G~pGsGKT~la~qfl~~g~~~~ge~~lyvs~eE   60 (484)
T TIGR02655         7 IEGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIHFDEPGVFVTFEE   60 (484)
T ss_pred             chhHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEec
Confidence            44555542 2445888899999999999999998733    22  355777764

Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.

>PHA02544 44 clamp loader, small subunit; Provisional

Probab=96.66  E-value=0.0019  Score=55.12  Aligned_cols=29  Identities=17%  Similarity=0.039  Sum_probs=23.6

Q ss_pred             CeEEEEEcCCCCCchHHHHHHHHHhCCCe
Q 030464           78 GVHWAFIGSPRAKKHVYAEMLSKLLEVPR  106 (177)
Q Consensus        78 ~~~IlIiGpPGSGKSTlA~~LAk~lgl~~  106 (177)
                      +..+++.||||+|||++++.+++.++..+
T Consensus        43 ~~~lll~G~~G~GKT~la~~l~~~~~~~~   71 (316)
T PHA02544         43 PNMLLHSPSPGTGKTTVAKALCNEVGAEV   71 (316)
T ss_pred             CeEEEeeCcCCCCHHHHHHHHHHHhCccc
Confidence            34556689999999999999999876543

>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed

Probab=96.65  E-value=0.0019  Score=62.36  Aligned_cols=36  Identities=17%  Similarity=0.229  Sum_probs=29.8

Q ss_pred             CCeEEEEEcCCCCCchHHHHHHHHHhCCCeeeCchh
Q 030464           77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSI  112 (177)
Q Consensus        77 ~~~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~dL  112 (177)
                      +...++|.||||+||||+|+.+++..+..++.+...
T Consensus        51 ~~~slLL~GPpGtGKTTLA~aIA~~~~~~f~~lna~   86 (725)
T PRK13341         51 RVGSLILYGPPGVGKTTLARIIANHTRAHFSSLNAV   86 (725)
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHhcCcceeehhh
Confidence            345789999999999999999999988776666543

>TIGR00101 ureG urease accessory protein UreG

Probab=96.65  E-value=0.0019  Score=52.66  Aligned_cols=25  Identities=20%  Similarity=0.256  Sum_probs=22.4

Q ss_pred             CeEEEEEcCCCCCchHHHHHHHHHh
Q 030464           78 GVHWAFIGSPRAKKHVYAEMLSKLL  102 (177)
Q Consensus        78 ~~~IlIiGpPGSGKSTlA~~LAk~l  102 (177)
                      |.+|.|+|++||||||+.+.+.+.+
T Consensus         1 ~~~i~i~G~~GsGKTTll~~l~~~l   25 (199)
T TIGR00101         1 PLKIGVAGPVGSGKTALIEALTRAL   25 (199)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHhh
Confidence            4689999999999999999998765

This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.

>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse

Probab=96.63  E-value=0.0016  Score=47.42  Aligned_cols=21  Identities=29%  Similarity=0.406  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCCchHHHHHHHH
Q 030464           80 HWAFIGSPRAKKHVYAEMLSK  100 (177)
Q Consensus        80 ~IlIiGpPGSGKSTlA~~LAk  100 (177)
                      +|+|+|.||+||||+...|..
T Consensus         1 ~V~iiG~~~~GKSTlin~l~~   21 (116)
T PF01926_consen    1 RVAIIGRPNVGKSTLINALTG   21 (116)
T ss_dssp             EEEEEESTTSSHHHHHHHHHT
T ss_pred             CEEEECCCCCCHHHHHHHHhc
Confidence            589999999999999999986

These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....

>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response

Probab=96.63  E-value=0.0037  Score=50.62  Aligned_cols=28  Identities=14%  Similarity=-0.029  Sum_probs=24.1

Q ss_pred             ccCCCeEEEEEcCCCCCchHHHHHHHHH
Q 030464           74 ERRRGVHWAFIGSPRAKKHVYAEMLSKL  101 (177)
Q Consensus        74 ~~~~~~~IlIiGpPGSGKSTlA~~LAk~  101 (177)
                      ...++..+.|.|+||+|||++|..++..
T Consensus        15 G~~~g~v~~I~G~~GsGKT~l~~~ia~~   42 (226)
T cd01393          15 GIPTGRITEIFGEFGSGKTQLCLQLAVE   42 (226)
T ss_pred             CCcCCcEEEEeCCCCCChhHHHHHHHHH
Confidence            4457788999999999999999999764

RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.

>PRK05416 glmZ(sRNA)-inactivating NTPase; Provisional

Probab=96.63  E-value=0.002  Score=55.80  Aligned_cols=32  Identities=19%  Similarity=-0.059  Sum_probs=25.2

Q ss_pred             CCeEEEEEcCCCCCchHHHHHHHHHhCCCeeeC
Q 030464           77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISM  109 (177)
Q Consensus        77 ~~~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~  109 (177)
                      .+..|+|+|++||||||+++.|+ ..|+..++-
T Consensus         5 ~~~~i~i~G~~GsGKtt~~~~l~-~~g~~~~d~   36 (288)
T PRK05416          5 PMRLVIVTGLSGAGKSVALRALE-DLGYYCVDN   36 (288)
T ss_pred             CceEEEEECCCCCcHHHHHHHHH-HcCCeEECC
Confidence            34578999999999999999996 457665543

>KOG0745 consensus Putative ATP-dependent Clp-type protease (AAA+ ATPase superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=96.62  E-value=0.0037  Score=57.43  Aligned_cols=34  Identities=21%  Similarity=0.327  Sum_probs=29.9

Q ss_pred             CCCeEEEEEcCCCCCchHHHHHHHHHhCCCeeeC
Q 030464           76 RRGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISM  109 (177)
Q Consensus        76 ~~~~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~  109 (177)
                      ...-+|+++||.|||||.+|+.||+-+++|+.=.
T Consensus       224 LeKSNvLllGPtGsGKTllaqTLAr~ldVPfaIc  257 (564)
T KOG0745|consen  224 LEKSNVLLLGPTGSGKTLLAQTLARVLDVPFAIC  257 (564)
T ss_pred             eecccEEEECCCCCchhHHHHHHHHHhCCCeEEe
Confidence            4567899999999999999999999999996544

>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily

Probab=96.61  E-value=0.0019  Score=48.38  Aligned_cols=23  Identities=13%  Similarity=0.102  Sum_probs=20.7

Q ss_pred             eEEEEEcCCCCCchHHHHHHHHH
Q 030464           79 VHWAFIGSPRAKKHVYAEMLSKL  101 (177)
Q Consensus        79 ~~IlIiGpPGSGKSTlA~~LAk~  101 (177)
                      .+|+|+|.||+|||++..++...
T Consensus         2 ~ki~iiG~~~vGKTsl~~~~~~~   24 (162)
T cd04138           2 YKLVVVGAGGVGKSALTIQLIQN   24 (162)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhC
Confidence            47999999999999999999764

H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.

>KOG1533 consensus Predicted GTPase [General function prediction only]

Probab=96.61  E-value=0.0012  Score=56.35  Aligned_cols=22  Identities=32%  Similarity=0.551  Sum_probs=18.8

Q ss_pred             EEEEcCCCCCchHHHHHHHHHh
Q 030464           81 WAFIGSPRAKKHVYAEMLSKLL  102 (177)
Q Consensus        81 IlIiGpPGSGKSTlA~~LAk~l  102 (177)
                      -+|+|||||||||.|--..+-+
T Consensus         5 qvVIGPPgSGKsTYc~g~~~fl   26 (290)
T KOG1533|consen    5 QVVIGPPGSGKSTYCNGMSQFL   26 (290)
T ss_pred             eEEEcCCCCCccchhhhHHHHH
Confidence            5799999999999998876654

>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=96.61  E-value=0.0022  Score=57.51  Aligned_cols=37  Identities=22%  Similarity=0.250  Sum_probs=28.1

Q ss_pred             cccCccCcccCCCeEEEEEcCCCCCchHHHHHHHHHh
Q 030464           66 TLPDTEGRERRRGVHWAFIGSPRAKKHVYAEMLSKLL  102 (177)
Q Consensus        66 ~~~~~~~~~~~~~~~IlIiGpPGSGKSTlA~~LAk~l  102 (177)
                      +.+.....+..++-.++|+||+|+||||++.+|+..+
T Consensus       125 ~~~~~~~~~~~~g~ii~lvGptGvGKTTtiakLA~~~  161 (374)
T PRK14722        125 PVLDSEDALMERGGVFALMGPTGVGKTTTTAKLAARC  161 (374)
T ss_pred             hhhcCCCccccCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence            3333343445677789999999999999999998753

>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]

Probab=96.60  E-value=0.0038  Score=53.57  Aligned_cols=27  Identities=19%  Similarity=0.144  Sum_probs=24.1

Q ss_pred             CCCeEEEEEcCCCCCchHHHHHHHHHh
Q 030464           76 RRGVHWAFIGSPRAKKHVYAEMLSKLL  102 (177)
Q Consensus        76 ~~~~~IlIiGpPGSGKSTlA~~LAk~l  102 (177)
                      ...++++|.||||+||||.+..||..+
T Consensus        46 gnmP~liisGpPG~GKTTsi~~LAr~L   72 (333)
T KOG0991|consen   46 GNMPNLIISGPPGTGKTTSILCLAREL   72 (333)
T ss_pred             CCCCceEeeCCCCCchhhHHHHHHHHH
Confidence            466899999999999999999999865

>TIGR02237 recomb_radB DNA repair and recombination protein RadB

Probab=96.59  E-value=0.0027  Score=51.04  Aligned_cols=38  Identities=21%  Similarity=0.200  Sum_probs=30.2

Q ss_pred             ccCCCeEEEEEcCCCCCchHHHHHHHHHh-----CCCeeeCch
Q 030464           74 ERRRGVHWAFIGSPRAKKHVYAEMLSKLL-----EVPRISMSS  111 (177)
Q Consensus        74 ~~~~~~~IlIiGpPGSGKSTlA~~LAk~l-----gl~~Is~~d  111 (177)
                      ...++..+.|.|+||||||++|.+++...     .+.+|+..+
T Consensus         8 Gi~~g~i~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~~e~   50 (209)
T TIGR02237         8 GVERGTITQIYGPPGSGKTNICMILAVNAARQGKKVVYIDTEG   50 (209)
T ss_pred             CCCCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCC
Confidence            44578889999999999999999988643     366777754

This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).

>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional

Probab=96.59  E-value=0.0017  Score=52.37  Aligned_cols=27  Identities=15%  Similarity=-0.108  Sum_probs=23.6

Q ss_pred             CCeEEEEEcCCCCCchHHHHHHHHHhC
Q 030464           77 RGVHWAFIGSPRAKKHVYAEMLSKLLE  103 (177)
Q Consensus        77 ~~~~IlIiGpPGSGKSTlA~~LAk~lg  103 (177)
                      +++.+.|+|++||||||+++.|...+.
T Consensus         5 ~~~ii~ivG~sgsGKTTLi~~li~~l~   31 (173)
T PRK10751          5 MIPLLAIAAWSGTGKTTLLKKLIPALC   31 (173)
T ss_pred             CceEEEEECCCCChHHHHHHHHHHHHh
Confidence            566788999999999999999987764

>PRK15455 PrkA family serine protein kinase; Provisional

Probab=96.58  E-value=0.0018  Score=61.30  Aligned_cols=27  Identities=26%  Similarity=0.302  Sum_probs=24.0

Q ss_pred             CCeEEEEEcCCCCCchHHHHHHHHHhC
Q 030464           77 RGVHWAFIGSPRAKKHVYAEMLSKLLE  103 (177)
Q Consensus        77 ~~~~IlIiGpPGSGKSTlA~~LAk~lg  103 (177)
                      +...++++||||+|||++++.|++.+.
T Consensus       102 ~~~IL~LvGPpG~GKSsLa~~la~~le  128 (644)
T PRK15455        102 KKQILYLLGPVGGGKSSLAERLKSLME  128 (644)
T ss_pred             CCceEEEecCCCCCchHHHHHHHHHHH
Confidence            556889999999999999999999764

>TIGR00362 DnaA chromosomal replication initiator protein DnaA

Probab=96.58  E-value=0.0057  Score=54.51  Aligned_cols=36  Identities=11%  Similarity=0.082  Sum_probs=27.9

Q ss_pred             EEEEEcCCCCCchHHHHHHHHHh-----C--CCeeeCchhhhh
Q 030464           80 HWAFIGSPRAKKHVYAEMLSKLL-----E--VPRISMSSIVRQ  115 (177)
Q Consensus        80 ~IlIiGpPGSGKSTlA~~LAk~l-----g--l~~Is~~dLlr~  115 (177)
                      .++|.|+||+|||++++.++..+     +  +.+++..++...
T Consensus       138 ~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~~~~~~~~  180 (405)
T TIGR00362       138 PLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVSSEKFTND  180 (405)
T ss_pred             eEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEEHHHHHHH
Confidence            47899999999999999998764     3  457777665543

DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).

>smart00175 RAB Rab subfamily of small GTPases

Probab=96.57  E-value=0.0018  Score=48.75  Aligned_cols=23  Identities=13%  Similarity=0.125  Sum_probs=20.3

Q ss_pred             eEEEEEcCCCCCchHHHHHHHHH
Q 030464           79 VHWAFIGSPRAKKHVYAEMLSKL  101 (177)
Q Consensus        79 ~~IlIiGpPGSGKSTlA~~LAk~  101 (177)
                      ++|+|+|+|||||||+.+++...
T Consensus         1 ~kv~v~G~~~~GKTtli~~l~~~   23 (164)
T smart00175        1 FKIILIGDSGVGKSSLLSRFTDG   23 (164)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcC
Confidence            47999999999999999999653

Rab GTPases are implicated in vesicle trafficking.

>TIGR00231 small_GTP small GTP-binding protein domain

Probab=96.57  E-value=0.0021  Score=46.86  Aligned_cols=24  Identities=17%  Similarity=0.235  Sum_probs=21.5

Q ss_pred             eEEEEEcCCCCCchHHHHHHHHHh
Q 030464           79 VHWAFIGSPRAKKHVYAEMLSKLL  102 (177)
Q Consensus        79 ~~IlIiGpPGSGKSTlA~~LAk~l  102 (177)
                      .+|+|+|.+||||||+..+|....
T Consensus         2 ~ki~~~G~~~~GKstl~~~l~~~~   25 (161)
T TIGR00231         2 IKIVIVGDPNVGKSTLLNRLLGNK   25 (161)
T ss_pred             eEEEEECCCCCCHHHHHHHHhCCC
Confidence            689999999999999999997654

This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.

>cd00154 Rab Rab family

Probab=96.57  E-value=0.0018  Score=47.79  Aligned_cols=23  Identities=13%  Similarity=0.057  Sum_probs=20.1

Q ss_pred             eEEEEEcCCCCCchHHHHHHHHH
Q 030464           79 VHWAFIGSPRAKKHVYAEMLSKL  101 (177)
Q Consensus        79 ~~IlIiGpPGSGKSTlA~~LAk~  101 (177)
                      ++|+++|+||+||||+..++...
T Consensus         1 ~~i~~~G~~~~GKStl~~~l~~~   23 (159)
T cd00154           1 FKIVLIGDSGVGKTSLLLRFVDG   23 (159)
T ss_pred             CeEEEECCCCCCHHHHHHHHHhC
Confidence            47999999999999999988543

Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di

>PRK06645 DNA polymerase III subunits gamma and tau; Validated

Probab=96.57  E-value=0.002  Score=59.79  Aligned_cols=30  Identities=13%  Similarity=0.163  Sum_probs=26.4

Q ss_pred             CCeEEEEEcCCCCCchHHHHHHHHHhCCCe
Q 030464           77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPR  106 (177)
Q Consensus        77 ~~~~IlIiGpPGSGKSTlA~~LAk~lgl~~  106 (177)
                      .+..++|.||||+||||+|+.+|+.+++.+
T Consensus        42 i~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~   71 (507)
T PRK06645         42 LAGGYLLTGIRGVGKTTSARIIAKAVNCSA   71 (507)
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHhcCcc
Confidence            346799999999999999999999998754

>KOG3877 consensus NADH:ubiquinone oxidoreductase, NDUFA10/42kDa subunit [Energy production and conversion]

Probab=96.57  E-value=0.0023  Score=55.95  Aligned_cols=39  Identities=18%  Similarity=0.124  Sum_probs=33.2

Q ss_pred             CCCeEEEEEcCCCCCchHHHHHHHHHhCCCeee---Cchhhh
Q 030464           76 RRGVHWAFIGSPRAKKHVYAEMLSKLLEVPRIS---MSSIVR  114 (177)
Q Consensus        76 ~~~~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is---~~dLlr  114 (177)
                      +++..|+|-|+-|+|||++|+.||+++|+.|+-   +++++-
T Consensus        69 enSkvI~VeGnI~sGK~klAKelAe~Lgf~hfP~~~~d~iyv  110 (393)
T KOG3877|consen   69 ENSKVIVVEGNIGSGKTKLAKELAEQLGFVHFPEFRMDDIYV  110 (393)
T ss_pred             ccceEEEEeCCcccCchhHHHHHHHHhCCcccccccccceee
Confidence            577889999999999999999999999988764   665543

>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]

Probab=96.56  E-value=0.0036  Score=55.08  Aligned_cols=38  Identities=18%  Similarity=0.281  Sum_probs=31.5

Q ss_pred             CCeEEEEEcCCCCCchHHHHHHHHHhCCCeeeCchhhh
Q 030464           77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVR  114 (177)
Q Consensus        77 ~~~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~dLlr  114 (177)
                      -.++.+|.||||.|||+.|..+|..++.+++--..++.
T Consensus        56 ~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~   93 (346)
T KOG0989|consen   56 ILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLE   93 (346)
T ss_pred             CCceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhh
Confidence            45789999999999999999999998886666555554

>smart00173 RAS Ras subfamily of RAS small GTPases

Probab=96.55  E-value=0.0021  Score=48.81  Aligned_cols=21  Identities=14%  Similarity=0.170  Sum_probs=19.5

Q ss_pred             EEEEEcCCCCCchHHHHHHHH
Q 030464           80 HWAFIGSPRAKKHVYAEMLSK  100 (177)
Q Consensus        80 ~IlIiGpPGSGKSTlA~~LAk  100 (177)
                      +|+|+|+||+||||+..++..
T Consensus         2 ki~v~G~~~~GKTsli~~~~~   22 (164)
T smart00173        2 KLVVLGSGGVGKSALTIQFVQ   22 (164)
T ss_pred             EEEEECCCCCCHHHHHHHHHh
Confidence            799999999999999999975

Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades

>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=96.55  E-value=0.002  Score=58.40  Aligned_cols=32  Identities=19%  Similarity=0.240  Sum_probs=28.6

Q ss_pred             EEEEEcCCCCCchHHHHHHHHHhCCCeeeCch
Q 030464           80 HWAFIGSPRAKKHVYAEMLSKLLEVPRISMSS  111 (177)
Q Consensus        80 ~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~d  111 (177)
                      -|++.||||+|||-+|+++|-+-|..+|++..
T Consensus       247 gvLm~GPPGTGKTlLAKAvATEc~tTFFNVSs  278 (491)
T KOG0738|consen  247 GVLMVGPPGTGKTLLAKAVATECGTTFFNVSS  278 (491)
T ss_pred             eeeeeCCCCCcHHHHHHHHHHhhcCeEEEech
Confidence            57899999999999999999999988877764

>PRK10416 signal recognition particle-docking protein FtsY; Provisional

Probab=96.55  E-value=0.0024  Score=55.94  Aligned_cols=27  Identities=11%  Similarity=0.081  Sum_probs=23.7

Q ss_pred             CCCeEEEEEcCCCCCchHHHHHHHHHh
Q 030464           76 RRGVHWAFIGSPRAKKHVYAEMLSKLL  102 (177)
Q Consensus        76 ~~~~~IlIiGpPGSGKSTlA~~LAk~l  102 (177)
                      .++..|.|+||+|+||||++..||..+
T Consensus       112 ~~~~vi~lvGpnGsGKTTt~~kLA~~l  138 (318)
T PRK10416        112 KKPFVILVVGVNGVGKTTTIGKLAHKY  138 (318)
T ss_pred             CCCeEEEEECCCCCcHHHHHHHHHHHH
Confidence            356788999999999999999998876

>PRK10867 signal recognition particle protein; Provisional

Probab=96.54  E-value=0.014  Score=53.35  Aligned_cols=35  Identities=23%  Similarity=0.217  Sum_probs=26.2

Q ss_pred             CCCeEEEEEcCCCCCchHHHHHHHHHh----C--CCeeeCc
Q 030464           76 RRGVHWAFIGSPRAKKHVYAEMLSKLL----E--VPRISMS  110 (177)
Q Consensus        76 ~~~~~IlIiGpPGSGKSTlA~~LAk~l----g--l~~Is~~  110 (177)
                      .++..|+|+|++||||||.+..||..+    |  +..++.+
T Consensus        98 ~~p~vI~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D  138 (433)
T PRK10867         98 KPPTVIMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVAAD  138 (433)
T ss_pred             CCCEEEEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEEcc
Confidence            356788999999999999888887643    3  3456654

>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication

Probab=96.54  E-value=0.0054  Score=50.60  Aligned_cols=35  Identities=14%  Similarity=0.185  Sum_probs=27.2

Q ss_pred             EEEEcCCCCCchHHHHHHHHHh-------CCCeeeCchhhhh
Q 030464           81 WAFIGSPRAKKHVYAEMLSKLL-------EVPRISMSSIVRQ  115 (177)
Q Consensus        81 IlIiGpPGSGKSTlA~~LAk~l-------gl~~Is~~dLlr~  115 (177)
                      ++|.|++|+|||++.+.++..+       .+.+++..++.+.
T Consensus        37 l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~~~~f~~~   78 (219)
T PF00308_consen   37 LFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLSAEEFIRE   78 (219)
T ss_dssp             EEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEEHHHHHHH
T ss_pred             eEEECCCCCCHHHHHHHHHHHHHhccccccceeecHHHHHHH
Confidence            7899999999999999997653       3457777676654

DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.

>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins

Probab=96.54  E-value=0.0022  Score=57.68  Aligned_cols=41  Identities=29%  Similarity=0.406  Sum_probs=29.2

Q ss_pred             CeEEEEEcCCCCCchHHHHHHHHHhC--CCeeeC--chhhhhccC
Q 030464           78 GVHWAFIGSPRAKKHVYAEMLSKLLE--VPRISM--SSIVRQDLS  118 (177)
Q Consensus        78 ~~~IlIiGpPGSGKSTlA~~LAk~lg--l~~Is~--~dLlr~el~  118 (177)
                      +..|+|.||||+|||.+|-.+|+.+|  +|++.+  .+++..+++
T Consensus        50 Gr~iLiaGppGtGKTAlA~~ia~eLG~~~PF~~isgSEiyS~e~k   94 (398)
T PF06068_consen   50 GRAILIAGPPGTGKTALAMAIAKELGEDVPFVSISGSEIYSSEVK   94 (398)
T ss_dssp             T-EEEEEE-TTSSHHHHHHHHHHHCTTTS-EEEEEGGGG-BTTC-
T ss_pred             CcEEEEeCCCCCCchHHHHHHHHHhCCCCCeeEcccceeeecccC
Confidence            56799999999999999999999997  665544  456655544

The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.

>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ

Probab=96.53  E-value=0.0048  Score=55.27  Aligned_cols=87  Identities=14%  Similarity=0.027  Sum_probs=47.8

Q ss_pred             EEEEEcCCCCCchHHHHHHHHHh-----CCCeeeCchhhhhccCCCCchHHHHHHHHHcCCcchHHHHHHHHHHHHHccC
Q 030464           80 HWAFIGSPRAKKHVYAEMLSKLL-----EVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGLLSKRLEDGY  154 (177)
Q Consensus        80 ~IlIiGpPGSGKSTlA~~LAk~l-----gl~~Is~~dLlr~el~~~s~lgk~i~~~l~~G~~Ipdeli~~Ll~~~L~~~~  154 (177)
                      .|+|.||+||||||+.+.|.+.+     +...+++.|=++-.+.....+....+.  +-|...  +...++++..|.+. 
T Consensus       151 lilI~G~TGSGKTT~l~al~~~i~~~~~~~~IvtiEdp~E~~~~~~~~~~~~~q~--evg~~~--~~~~~~l~~aLR~~-  225 (372)
T TIGR02525       151 LGLICGETGSGKSTLAASIYQHCGETYPDRKIVTYEDPIEYILGSPDDLLPPAQS--QIGRDV--DSFANGIRLALRRA-  225 (372)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEecCchhccCCCceeeccccc--ccCCCc--cCHHHHHHHhhccC-
Confidence            58899999999999999997765     245677766544333221111000000  111111  12345555555543 


Q ss_pred             CCCcceEEEeCCCCCHHHHHh
Q 030464          155 YRGEIGFILDGLPRSRIQATI  175 (177)
Q Consensus       155 ~~~~~G~ILDGfPrt~~QAe~  175 (177)
                          -.+|+=|.=|+.+-++.
T Consensus       226 ----PD~I~vGEiRd~et~~~  242 (372)
T TIGR02525       226 ----PKIIGVGEIRDLETFQA  242 (372)
T ss_pred             ----CCEEeeCCCCCHHHHHH
Confidence                25666666677765553

Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).

>cd00157 Rho Rho (Ras homology) family

Probab=96.53  E-value=0.0021  Score=48.87  Aligned_cols=23  Identities=9%  Similarity=0.059  Sum_probs=20.7

Q ss_pred             eEEEEEcCCCCCchHHHHHHHHH
Q 030464           79 VHWAFIGSPRAKKHVYAEMLSKL  101 (177)
Q Consensus        79 ~~IlIiGpPGSGKSTlA~~LAk~  101 (177)
                      ++|+|+|++|+|||++..+|...
T Consensus         1 iki~i~G~~~~GKSsli~~l~~~   23 (171)
T cd00157           1 IKIVVVGDGAVGKTCLLISYTTG   23 (171)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhC
Confidence            47999999999999999999754

Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein

>PRK05707 DNA polymerase III subunit delta'; Validated

Probab=96.52  E-value=0.0071  Score=53.11  Aligned_cols=30  Identities=23%  Similarity=0.228  Sum_probs=26.0

Q ss_pred             CCCeEEEEEcCCCCCchHHHHHHHHHhCCC
Q 030464           76 RRGVHWAFIGSPRAKKHVYAEMLSKLLEVP  105 (177)
Q Consensus        76 ~~~~~IlIiGpPGSGKSTlA~~LAk~lgl~  105 (177)
                      ..++-++|.||+|+||+++|..+|+.+.+.
T Consensus        20 r~~ha~Lf~G~~G~GK~~~A~~~A~~llC~   49 (328)
T PRK05707         20 RHPHAYLLHGPAGIGKRALAERLAAALLCE   49 (328)
T ss_pred             CcceeeeeECCCCCCHHHHHHHHHHHHcCC
Confidence            345669999999999999999999998764

>PRK07003 DNA polymerase III subunits gamma and tau; Validated

Probab=96.52  E-value=0.009  Score=58.20  Aligned_cols=28  Identities=18%  Similarity=0.319  Sum_probs=24.9

Q ss_pred             CeEEEEEcCCCCCchHHHHHHHHHhCCC
Q 030464           78 GVHWAFIGSPRAKKHVYAEMLSKLLEVP  105 (177)
Q Consensus        78 ~~~IlIiGpPGSGKSTlA~~LAk~lgl~  105 (177)
                      +.-++|.|++|+||||+++.|++.+++.
T Consensus        38 ~HAyLFtGPpGvGKTTlAriLAKaLnCe   65 (830)
T PRK07003         38 HHAYLFTGTRGVGKTTLSRIFAKALNCE   65 (830)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHhcCc
Confidence            4567899999999999999999999864

>PRK10733 hflB ATP-dependent metalloprotease; Reviewed

Probab=96.51  E-value=0.0023  Score=60.86  Aligned_cols=32  Identities=22%  Similarity=0.350  Sum_probs=28.7

Q ss_pred             eEEEEEcCCCCCchHHHHHHHHHhCCCeeeCc
Q 030464           79 VHWAFIGSPRAKKHVYAEMLSKLLEVPRISMS  110 (177)
Q Consensus        79 ~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~  110 (177)
                      ..|+|.||||+|||++++.+++..+++++.+.
T Consensus       186 ~gill~G~~G~GKt~~~~~~a~~~~~~f~~is  217 (644)
T PRK10733        186 KGVLMVGPPGTGKTLLAKAIAGEAKVPFFTIS  217 (644)
T ss_pred             CcEEEECCCCCCHHHHHHHHHHHcCCCEEEEe
Confidence            44999999999999999999999999877664

>PRK14974 cell division protein FtsY; Provisional

Probab=96.51  E-value=0.0024  Score=56.39  Aligned_cols=26  Identities=23%  Similarity=0.257  Sum_probs=22.4

Q ss_pred             CCeEEEEEcCCCCCchHHHHHHHHHh
Q 030464           77 RGVHWAFIGSPRAKKHVYAEMLSKLL  102 (177)
Q Consensus        77 ~~~~IlIiGpPGSGKSTlA~~LAk~l  102 (177)
                      ++..|+|+|+||+||||++..||..+
T Consensus       139 ~~~vi~~~G~~GvGKTTtiakLA~~l  164 (336)
T PRK14974        139 KPVVIVFVGVNGTGKTTTIAKLAYYL  164 (336)
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHH
Confidence            56789999999999999888887754

>cd04136 Rap_like Rap-like subfamily

Probab=96.50  E-value=0.0025  Score=48.04  Aligned_cols=22  Identities=14%  Similarity=0.129  Sum_probs=20.1

Q ss_pred             eEEEEEcCCCCCchHHHHHHHH
Q 030464           79 VHWAFIGSPRAKKHVYAEMLSK  100 (177)
Q Consensus        79 ~~IlIiGpPGSGKSTlA~~LAk  100 (177)
                      .+|+|+|.||+|||+++.++..
T Consensus         2 ~ki~i~G~~~vGKTsl~~~~~~   23 (163)
T cd04136           2 YKVVVLGSGGVGKSALTVQFVQ   23 (163)
T ss_pred             eEEEEECCCCCCHHHHHHHHHh
Confidence            5899999999999999999875

The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.

>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B

Probab=96.49  E-value=0.0033  Score=51.21  Aligned_cols=28  Identities=14%  Similarity=0.054  Sum_probs=24.2

Q ss_pred             ccCCCeEEEEEcCCCCCchHHHHHHHHH
Q 030464           74 ERRRGVHWAFIGSPRAKKHVYAEMLSKL  101 (177)
Q Consensus        74 ~~~~~~~IlIiGpPGSGKSTlA~~LAk~  101 (177)
                      ...++..+.|.|+||||||++|..++..
T Consensus        15 Gi~~g~i~~i~G~~GsGKT~l~~~l~~~   42 (235)
T cd01123          15 GIETGSITEIFGEFGSGKTQLCHQLAVT   42 (235)
T ss_pred             CCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence            4567888999999999999999999743

This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .

>PRK14086 dnaA chromosomal replication initiation protein; Provisional

Probab=96.49  E-value=0.006  Score=57.94  Aligned_cols=35  Identities=11%  Similarity=0.113  Sum_probs=28.8

Q ss_pred             EEEEcCCCCCchHHHHHHHHHh-------CCCeeeCchhhhh
Q 030464           81 WAFIGSPRAKKHVYAEMLSKLL-------EVPRISMSSIVRQ  115 (177)
Q Consensus        81 IlIiGpPGSGKSTlA~~LAk~l-------gl~~Is~~dLlr~  115 (177)
                      ++|.|++|+|||++++.++...       .+.+++..+++.+
T Consensus       317 L~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yitaeef~~e  358 (617)
T PRK14086        317 LFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVSSEEFTNE  358 (617)
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHHHH
Confidence            7899999999999999998864       3468888777654

>TIGR00959 ffh signal recognition particle protein

Probab=96.49  E-value=0.017  Score=52.70  Aligned_cols=35  Identities=14%  Similarity=0.111  Sum_probs=26.9

Q ss_pred             CCCeEEEEEcCCCCCchHHHHHHHHHh----C--CCeeeCc
Q 030464           76 RRGVHWAFIGSPRAKKHVYAEMLSKLL----E--VPRISMS  110 (177)
Q Consensus        76 ~~~~~IlIiGpPGSGKSTlA~~LAk~l----g--l~~Is~~  110 (177)
                      .++..|+++|+|||||||+|..||..+    |  +..++.+
T Consensus        97 ~~p~vi~~vG~~GsGKTTtaakLA~~l~~~~g~kV~lV~~D  137 (428)
T TIGR00959        97 KPPTVILMVGLQGSGKTTTCGKLAYYLKKKQGKKVLLVACD  137 (428)
T ss_pred             CCCEEEEEECCCCCcHHHHHHHHHHHHHHhCCCeEEEEecc
Confidence            356788999999999999988887763    2  4456664

This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.

>PRK14956 DNA polymerase III subunits gamma and tau; Provisional

Probab=96.48  E-value=0.0024  Score=59.00  Aligned_cols=28  Identities=29%  Similarity=0.444  Sum_probs=25.1

Q ss_pred             CeEEEEEcCCCCCchHHHHHHHHHhCCC
Q 030464           78 GVHWAFIGSPRAKKHVYAEMLSKLLEVP  105 (177)
Q Consensus        78 ~~~IlIiGpPGSGKSTlA~~LAk~lgl~  105 (177)
                      +.-++|.||||+||||+|+.+|+.++..
T Consensus        40 ~ha~Lf~GP~GtGKTTlAriLAk~Lnce   67 (484)
T PRK14956         40 GHAYIFFGPRGVGKTTIARILAKRLNCE   67 (484)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHhcCcc
Confidence            4558999999999999999999998874

>PRK09435 membrane ATPase/protein kinase; Provisional

Probab=96.47  E-value=0.0028  Score=55.92  Aligned_cols=27  Identities=22%  Similarity=0.345  Sum_probs=23.5

Q ss_pred             CCCeEEEEEcCCCCCchHHHHHHHHHh
Q 030464           76 RRGVHWAFIGSPRAKKHVYAEMLSKLL  102 (177)
Q Consensus        76 ~~~~~IlIiGpPGSGKSTlA~~LAk~l  102 (177)
                      .++.+|.|+|+|||||||++..|...+
T Consensus        54 ~~~~~igi~G~~GaGKSTl~~~l~~~l   80 (332)
T PRK09435         54 GNALRIGITGVPGVGKSTFIEALGMHL   80 (332)
T ss_pred             CCcEEEEEECCCCCCHHHHHHHHHHHH
Confidence            467889999999999999999887655

>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=96.46  E-value=0.002  Score=52.80  Aligned_cols=39  Identities=15%  Similarity=0.212  Sum_probs=33.2

Q ss_pred             CCccccCccCcccCCCeEEEEEcCCCCCchHHHHHHHHH
Q 030464           63 RSVTLPDTEGRERRRGVHWAFIGSPRAKKHVYAEMLSKL  101 (177)
Q Consensus        63 ~~~~~~~~~~~~~~~~~~IlIiGpPGSGKSTlA~~LAk~  101 (177)
                      .-.+.++..+.+-.++-.|.|+||+||||||+-+.+|..
T Consensus        14 ~~a~il~~isl~v~~Ge~iaitGPSG~GKStllk~va~L   52 (223)
T COG4619          14 GDAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASL   52 (223)
T ss_pred             CCCeeecceeeeecCCceEEEeCCCCccHHHHHHHHHhc
Confidence            346677777777788889999999999999999999874

>cd04113 Rab4 Rab4 subfamily

Probab=96.46  E-value=0.0022  Score=48.55  Aligned_cols=22  Identities=18%  Similarity=0.288  Sum_probs=19.9

Q ss_pred             eEEEEEcCCCCCchHHHHHHHH
Q 030464           79 VHWAFIGSPRAKKHVYAEMLSK  100 (177)
Q Consensus        79 ~~IlIiGpPGSGKSTlA~~LAk  100 (177)
                      .+|+|+|+||+||||+..+|..
T Consensus         1 ~ki~v~G~~~vGKTsli~~l~~   22 (161)
T cd04113           1 FKFIIIGSSGTGKSCLLHRFVE   22 (161)
T ss_pred             CEEEEECCCCCCHHHHHHHHHh
Confidence            4799999999999999999864

Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p

>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional

Probab=96.46  E-value=0.0019  Score=54.16  Aligned_cols=35  Identities=17%  Similarity=0.098  Sum_probs=27.7

Q ss_pred             cCccCcccCCCeEEEEEcCCCCCchHHHHHHHHHh
Q 030464           68 PDTEGRERRRGVHWAFIGSPRAKKHVYAEMLSKLL  102 (177)
Q Consensus        68 ~~~~~~~~~~~~~IlIiGpPGSGKSTlA~~LAk~l  102 (177)
                      ++.......++-++.|+|+.||||||+.+.|+..+
T Consensus        27 l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~   61 (265)
T PRK10575         27 LHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQ   61 (265)
T ss_pred             EeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCC
Confidence            44444455678889999999999999999998653

>TIGR03499 FlhF flagellar biosynthetic protein FlhF

Probab=96.45  E-value=0.0033  Score=53.84  Aligned_cols=35  Identities=20%  Similarity=0.221  Sum_probs=27.2

Q ss_pred             CCCeEEEEEcCCCCCchHHHHHHHHHh----C---CCeeeCc
Q 030464           76 RRGVHWAFIGSPRAKKHVYAEMLSKLL----E---VPRISMS  110 (177)
Q Consensus        76 ~~~~~IlIiGpPGSGKSTlA~~LAk~l----g---l~~Is~~  110 (177)
                      .++..|+|+||+|+||||++..|+..+    |   +.+|+++
T Consensus       192 ~~~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D  233 (282)
T TIGR03499       192 EQGGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITTD  233 (282)
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECC
Confidence            356788999999999999999998754    2   3466664

>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family

Probab=96.45  E-value=0.0056  Score=49.89  Aligned_cols=40  Identities=15%  Similarity=0.012  Sum_probs=30.0

Q ss_pred             cCCCeEEEEEcCCCCCchHHHHHHHHHh---C--CCeeeCchhhh
Q 030464           75 RRRGVHWAFIGSPRAKKHVYAEMLSKLL---E--VPRISMSSIVR  114 (177)
Q Consensus        75 ~~~~~~IlIiGpPGSGKSTlA~~LAk~l---g--l~~Is~~dLlr  114 (177)
                      ..++-.++|.|+||+|||++|..++...   |  +.++++.+-..
T Consensus        13 i~~g~~~li~G~~G~GKt~~~~~~~~~~~~~g~~~~y~s~e~~~~   57 (224)
T TIGR03880        13 FPEGHVIVVIGEYGTGKTTFSLQFLYQGLKNGEKAMYISLEEREE   57 (224)
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCHH
Confidence            3467788999999999999999887542   3  55777765433

This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.

>PF01443 Viral_helicase1: Viral (Superfamily 1) RNA helicase; InterPro: IPR000606 This entry includes RNA and DNA helicases

Probab=96.45  E-value=0.0019  Score=52.27  Aligned_cols=22  Identities=23%  Similarity=0.143  Sum_probs=20.2

Q ss_pred             EEEEcCCCCCchHHHHHHHHHh
Q 030464           81 WAFIGSPRAKKHVYAEMLSKLL  102 (177)
Q Consensus        81 IlIiGpPGSGKSTlA~~LAk~l  102 (177)
                      |+|.|+|||||||..+.+.+..
T Consensus         1 ~vv~G~pGsGKSt~i~~~~~~~   22 (234)
T PF01443_consen    1 IVVHGVPGSGKSTLIKKLLKDR   22 (234)
T ss_pred             CEEEcCCCCCHHHHHHHHHHhc
Confidence            5899999999999999998885

Some of the members are found in positive-strand single stranded RNA viruses. The helicase has multiple roles at different stages of viral RNA replication, as dissected by mutational analysis [].; GO: 0004386 helicase activity

>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]

Probab=96.45  E-value=0.0021  Score=60.39  Aligned_cols=33  Identities=21%  Similarity=0.223  Sum_probs=30.0

Q ss_pred             CeEEEEEcCCCCCchHHHHHHHHHhCCCeeeCc
Q 030464           78 GVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMS  110 (177)
Q Consensus        78 ~~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~  110 (177)
                      |+-|+++||||.|||-+|+++|-+-|++++.+.
T Consensus       337 PKGVLLvGPPGTGKTlLARAvAGEA~VPFF~~s  369 (752)
T KOG0734|consen  337 PKGVLLVGPPGTGKTLLARAVAGEAGVPFFYAS  369 (752)
T ss_pred             CCceEEeCCCCCchhHHHHHhhcccCCCeEecc
Confidence            456899999999999999999999999988775

>cd01862 Rab7 Rab7 subfamily

Probab=96.45  E-value=0.0023  Score=48.70  Aligned_cols=23  Identities=9%  Similarity=0.105  Sum_probs=20.1

Q ss_pred             eEEEEEcCCCCCchHHHHHHHHH
Q 030464           79 VHWAFIGSPRAKKHVYAEMLSKL  101 (177)
Q Consensus        79 ~~IlIiGpPGSGKSTlA~~LAk~  101 (177)
                      .+|+|+|+|||||||+..++...
T Consensus         1 ~ki~viG~~~~GKSsl~~~l~~~   23 (172)
T cd01862           1 LKVIILGDSGVGKTSLMNQYVNK   23 (172)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcC
Confidence            37999999999999999988653

Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-

>PRK05642 DNA replication initiation factor; Validated

Probab=96.44  E-value=0.0022  Score=53.35  Aligned_cols=36  Identities=3%  Similarity=-0.025  Sum_probs=28.5

Q ss_pred             eEEEEEcCCCCCchHHHHHHHHH-----hCCCeeeCchhhh
Q 030464           79 VHWAFIGSPRAKKHVYAEMLSKL-----LEVPRISMSSIVR  114 (177)
Q Consensus        79 ~~IlIiGpPGSGKSTlA~~LAk~-----lgl~~Is~~dLlr  114 (177)
                      ..++|.|++|+|||++++.++..     ..+.+++.++++.
T Consensus        46 ~~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~~~~~~~   86 (234)
T PRK05642         46 SLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLPLAELLD   86 (234)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEeeHHHHHh
Confidence            44789999999999999998753     3566888877664

>PRK07933 thymidylate kinase; Validated

Probab=96.43  E-value=0.0029  Score=51.99  Aligned_cols=25  Identities=32%  Similarity=0.280  Sum_probs=22.4

Q ss_pred             eEEEEEcCCCCCchHHHHHHHHHhC
Q 030464           79 VHWAFIGSPRAKKHVYAEMLSKLLE  103 (177)
Q Consensus        79 ~~IlIiGpPGSGKSTlA~~LAk~lg  103 (177)
                      +-|+|-|.-||||||+++.|++.+.
T Consensus         1 ~~IviEG~dGsGKST~~~~L~~~L~   25 (213)
T PRK07933          1 MLIAIEGVDGAGKRTLTEALRAALE   25 (213)
T ss_pred             CEEEEEcCCCCCHHHHHHHHHHHHH
Confidence            3588999999999999999999873

>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases

Probab=96.43  E-value=0.0027  Score=50.72  Aligned_cols=27  Identities=11%  Similarity=0.111  Sum_probs=23.5

Q ss_pred             CCCeEEEEEcCCCCCchHHHHHHHHHh
Q 030464           76 RRGVHWAFIGSPRAKKHVYAEMLSKLL  102 (177)
Q Consensus        76 ~~~~~IlIiGpPGSGKSTlA~~LAk~l  102 (177)
                      ..+..|+|+|++||||||+.+.|...+
T Consensus        23 ~~g~~i~I~G~tGSGKTTll~aL~~~i   49 (186)
T cd01130          23 EARKNILISGGTGSGKTTLLNALLAFI   49 (186)
T ss_pred             hCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence            456789999999999999999998765

The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.

>cd01394 radB RadB

Probab=96.42  E-value=0.0039  Score=50.46  Aligned_cols=37  Identities=24%  Similarity=0.201  Sum_probs=28.9

Q ss_pred             cCCCeEEEEEcCCCCCchHHHHHHHHHh-----CCCeeeCch
Q 030464           75 RRRGVHWAFIGSPRAKKHVYAEMLSKLL-----EVPRISMSS  111 (177)
Q Consensus        75 ~~~~~~IlIiGpPGSGKSTlA~~LAk~l-----gl~~Is~~d  111 (177)
                      ..++-.+.|.|+||||||++|..++...     .+.+++.+.
T Consensus        16 i~~g~i~~i~G~~GsGKT~l~~~~a~~~~~~g~~v~yi~~e~   57 (218)
T cd01394          16 VERGTVTQVYGPPGTGKTNIAIQLAVETAGQGKKVAYIDTEG   57 (218)
T ss_pred             ccCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEECCC
Confidence            3577889999999999999999998754     344676543

The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.

>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional

Probab=96.40  E-value=0.0027  Score=54.72  Aligned_cols=59  Identities=10%  Similarity=0.103  Sum_probs=38.4

Q ss_pred             cccccccccc----cccccccCCCCccccCccCcccCCCeEEEEEcCCCCCchHHHHHHHHHh
Q 030464           44 NYYSYYQAES----DSDQHRDSLRSVTLPDTEGRERRRGVHWAFIGSPRAKKHVYAEMLSKLL  102 (177)
Q Consensus        44 ~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~IlIiGpPGSGKSTlA~~LAk~l  102 (177)
                      ++|..++...    .++|.+..-...+.++.......++-.+.|+|+.||||||+.+.|+..+
T Consensus        33 ~~~~~~~~~~~~~l~i~nl~~~~~~~~iL~~is~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~   95 (305)
T PRK14264         33 DEWTDYEFDGDAKLSVEDLDVYYGDDHALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMN   95 (305)
T ss_pred             hcccccccCCCceEEEEEEEEEeCCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccc
Confidence            4666666555    2344432111123444445555688899999999999999999998653

>cd00876 Ras Ras family

Probab=96.40  E-value=0.0023  Score=47.77  Aligned_cols=21  Identities=14%  Similarity=0.139  Sum_probs=19.1

Q ss_pred             EEEEEcCCCCCchHHHHHHHH
Q 030464           80 HWAFIGSPRAKKHVYAEMLSK  100 (177)
Q Consensus        80 ~IlIiGpPGSGKSTlA~~LAk  100 (177)
                      +|+|+|++|||||++..++..
T Consensus         1 ki~i~G~~~~GKTsli~~l~~   21 (160)
T cd00876           1 KVVVLGAGGVGKSAITIQFVK   21 (160)
T ss_pred             CEEEECCCCCCHHHHHHHHHh
Confidence            589999999999999999865

The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m

>cd01895 EngA2 EngA2 subfamily

Probab=96.40  E-value=0.0027  Score=47.74  Aligned_cols=25  Identities=24%  Similarity=0.282  Sum_probs=22.1

Q ss_pred             CCeEEEEEcCCCCCchHHHHHHHHH
Q 030464           77 RGVHWAFIGSPRAKKHVYAEMLSKL  101 (177)
Q Consensus        77 ~~~~IlIiGpPGSGKSTlA~~LAk~  101 (177)
                      ++++|+|+|.||+||||+..+|.+.
T Consensus         1 ~~~~i~i~G~~~~GKstli~~l~~~   25 (174)
T cd01895           1 DPIRIAIIGRPNVGKSSLVNALLGE   25 (174)
T ss_pred             CCcEEEEEcCCCCCHHHHHHHHhCc
Confidence            3678999999999999999999664

This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.

>PRK14963 DNA polymerase III subunits gamma and tau; Provisional

Probab=96.40  E-value=0.0028  Score=58.78  Aligned_cols=28  Identities=18%  Similarity=0.292  Sum_probs=24.5

Q ss_pred             CCeEEEEEcCCCCCchHHHHHHHHHhCC
Q 030464           77 RGVHWAFIGSPRAKKHVYAEMLSKLLEV  104 (177)
Q Consensus        77 ~~~~IlIiGpPGSGKSTlA~~LAk~lgl  104 (177)
                      .+.-|+|.||||+||||+|+.+|+.+.+
T Consensus        35 l~ha~Lf~GppGtGKTTlA~~lA~~l~c   62 (504)
T PRK14963         35 LGHAYLFSGPRGVGKTTTARLIAMAVNC   62 (504)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHhc
Confidence            3456799999999999999999998864

>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A

Probab=96.39  E-value=0.0032  Score=48.72  Aligned_cols=24  Identities=17%  Similarity=0.122  Sum_probs=21.0

Q ss_pred             eEEEEEcCCCCCchHHHHHHHHHh
Q 030464           79 VHWAFIGSPRAKKHVYAEMLSKLL  102 (177)
Q Consensus        79 ~~IlIiGpPGSGKSTlA~~LAk~l  102 (177)
                      ++|.|+|+.+|||||+++.|.+.+
T Consensus         1 pvv~VvG~~~sGKTTl~~~Li~~l   24 (140)
T PF03205_consen    1 PVVQVVGPKNSGKTTLIRKLINEL   24 (140)
T ss_dssp             -EEEEEESTTSSHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHH
Confidence            478999999999999999997765

>KOG3308 consensus Uncharacterized protein of the uridine kinase family [Nucleotide transport and metabolism]

Probab=96.38  E-value=0.011  Score=49.31  Aligned_cols=38  Identities=13%  Similarity=0.194  Sum_probs=31.3

Q ss_pred             CeEEEEEcCCCCCchHHHHHHHHHh-CCCeeeCchhhhh
Q 030464           78 GVHWAFIGSPRAKKHVYAEMLSKLL-EVPRISMSSIVRQ  115 (177)
Q Consensus        78 ~~~IlIiGpPGSGKSTlA~~LAk~l-gl~~Is~~dLlr~  115 (177)
                      -+.|-|-|...|||||+|+.|..-| |...|+=+|...-
T Consensus         4 ~~ivgiSG~TnsGKTTLak~l~~~f~~~~lIhqDDFyKp   42 (225)
T KOG3308|consen    4 TLIVGISGCTNSGKTTLAKSLHRFFPGCSLIHQDDFYKP   42 (225)
T ss_pred             EEEEEeecccCCCHhHHHHHHHHHccCCeeeccccccCc
Confidence            3556677888899999999999987 6788998887764

>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

Probab=96.38  E-value=0.015  Score=55.53  Aligned_cols=31  Identities=13%  Similarity=0.216  Sum_probs=25.9

Q ss_pred             CCeEEEEEcCCCCCchHHHHHHHHHhCCCee
Q 030464           77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRI  107 (177)
Q Consensus        77 ~~~~IlIiGpPGSGKSTlA~~LAk~lgl~~I  107 (177)
                      ..+.|+++|.||+||||+|++|++.++...+
T Consensus       214 ~~~~~~~vglp~~GKStia~~L~~~l~~~~~  244 (664)
T PTZ00322        214 GSLIVIMVGLPGRGKTYVARQIQRYFQWNGL  244 (664)
T ss_pred             cceeEEecccCCCChhHHHHHHHHHHHhcCC
Confidence            4567899999999999999999999854433

>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]

Probab=96.38  E-value=0.0039  Score=60.18  Aligned_cols=34  Identities=15%  Similarity=0.190  Sum_probs=29.3

Q ss_pred             CCeEEEEEcCCCCCchHHHHHHHHHhCCCeeeCc
Q 030464           77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMS  110 (177)
Q Consensus        77 ~~~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~  110 (177)
                      ..++.++.||||.||||+|..+|+.-|+.++.+.
T Consensus       325 ~kKilLL~GppGlGKTTLAHViAkqaGYsVvEIN  358 (877)
T KOG1969|consen  325 PKKILLLCGPPGLGKTTLAHVIAKQAGYSVVEIN  358 (877)
T ss_pred             ccceEEeecCCCCChhHHHHHHHHhcCceEEEec
Confidence            3355678899999999999999999999988875

>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=96.38  E-value=0.0025  Score=58.26  Aligned_cols=29  Identities=14%  Similarity=0.356  Sum_probs=26.4

Q ss_pred             EEEEcCCCCCchHHHHHHHHHhCCCeeeC
Q 030464           81 WAFIGSPRAKKHVYAEMLSKLLEVPRISM  109 (177)
Q Consensus        81 IlIiGpPGSGKSTlA~~LAk~lgl~~Is~  109 (177)
                      +++.||||+|||++..++|..+++.+.++
T Consensus       238 YLLYGPPGTGKSS~IaAmAn~L~ydIydL  266 (457)
T KOG0743|consen  238 YLLYGPPGTGKSSFIAAMANYLNYDIYDL  266 (457)
T ss_pred             ceeeCCCCCCHHHHHHHHHhhcCCceEEe
Confidence            78999999999999999999998877765

>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]

Probab=96.38  E-value=0.0029  Score=59.30  Aligned_cols=31  Identities=26%  Similarity=0.204  Sum_probs=27.2

Q ss_pred             EEEEEcCCCCCchHHHHHHHHHhCCCeeeCc
Q 030464           80 HWAFIGSPRAKKHVYAEMLSKLLEVPRISMS  110 (177)
Q Consensus        80 ~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~  110 (177)
                      ..+|+||+||||||..+.|++.+|+.++...
T Consensus       112 iLLltGPsGcGKSTtvkvLskelg~~~~Ew~  142 (634)
T KOG1970|consen  112 ILLLTGPSGCGKSTTVKVLSKELGYQLIEWS  142 (634)
T ss_pred             EEEEeCCCCCCchhHHHHHHHhhCceeeeec
Confidence            4568899999999999999999999877654

>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family

Probab=96.38  E-value=0.0037  Score=61.35  Aligned_cols=41  Identities=24%  Similarity=0.359  Sum_probs=31.5

Q ss_pred             ccCCCe-EEEEEcCCCCCchHHHHHHHHHh-----CCCeeeCchhhh
Q 030464           74 ERRRGV-HWAFIGSPRAKKHVYAEMLSKLL-----EVPRISMSSIVR  114 (177)
Q Consensus        74 ~~~~~~-~IlIiGpPGSGKSTlA~~LAk~l-----gl~~Is~~dLlr  114 (177)
                      .|.+|. .++|+||||+|||.+|+.||+.+     .+..++|.++..
T Consensus       591 ~~~~p~~~~lf~Gp~GvGKT~lA~~La~~l~~~~~~~~~~dmse~~~  637 (852)
T TIGR03345       591 DPRKPLGVFLLVGPSGVGKTETALALAELLYGGEQNLITINMSEFQE  637 (852)
T ss_pred             CCCCCceEEEEECCCCCCHHHHHHHHHHHHhCCCcceEEEeHHHhhh
Confidence            355666 47899999999999999999987     345677666543

Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.

>PRK14955 DNA polymerase III subunits gamma and tau; Provisional

Probab=96.36  E-value=0.0033  Score=56.22  Aligned_cols=28  Identities=21%  Similarity=0.311  Sum_probs=24.9

Q ss_pred             CeEEEEEcCCCCCchHHHHHHHHHhCCC
Q 030464           78 GVHWAFIGSPRAKKHVYAEMLSKLLEVP  105 (177)
Q Consensus        78 ~~~IlIiGpPGSGKSTlA~~LAk~lgl~  105 (177)
                      +.-++|.||||+||||+|+.+|+.+.+.
T Consensus        38 ~ha~lf~Gp~G~GKtt~A~~~a~~l~c~   65 (397)
T PRK14955         38 GHGYIFSGLRGVGKTTAARVFAKAVNCQ   65 (397)
T ss_pred             ceeEEEECCCCCCHHHHHHHHHHHhcCC
Confidence            4458999999999999999999998764

>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase

Probab=96.35  E-value=0.0031  Score=53.44  Aligned_cols=30  Identities=13%  Similarity=0.273  Sum_probs=26.4

Q ss_pred             CCCeEEEEEcCCCCCchHHHHHHHHHhCCC
Q 030464           76 RRGVHWAFIGSPRAKKHVYAEMLSKLLEVP  105 (177)
Q Consensus        76 ~~~~~IlIiGpPGSGKSTlA~~LAk~lgl~  105 (177)
                      .++-+++|+|++|+||||+++.+++.....
T Consensus        14 ~~Gqr~~I~G~~G~GKTTLlr~I~n~l~~~   43 (249)
T cd01128          14 GKGQRGLIVAPPKAGKTTLLQSIANAITKN   43 (249)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHhccccc
Confidence            588899999999999999999999876543

It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.

>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes

Probab=96.34  E-value=0.0033  Score=46.66  Aligned_cols=24  Identities=21%  Similarity=0.394  Sum_probs=21.1

Q ss_pred             CeEEEEEcCCCCCchHHHHHHHHH
Q 030464           78 GVHWAFIGSPRAKKHVYAEMLSKL  101 (177)
Q Consensus        78 ~~~IlIiGpPGSGKSTlA~~LAk~  101 (177)
                      +.+|+++|++|+||||+..+|...
T Consensus         1 ~~~i~l~G~~~~GKstli~~l~~~   24 (157)
T cd04164           1 GIKVVIVGKPNVGKSSLLNALAGR   24 (157)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHCC
Confidence            358999999999999999998754

It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.

>TIGR01618 phage_P_loop phage nucleotide-binding protein

Probab=96.34  E-value=0.0025  Score=53.24  Aligned_cols=24  Identities=17%  Similarity=0.169  Sum_probs=21.2

Q ss_pred             CCeEEEEEcCCCCCchHHHHHHHH
Q 030464           77 RGVHWAFIGSPRAKKHVYAEMLSK  100 (177)
Q Consensus        77 ~~~~IlIiGpPGSGKSTlA~~LAk  100 (177)
                      .+..++|.|+||+||||+|+.|+.
T Consensus        11 ~~~~~liyG~~G~GKtt~a~~~~~   34 (220)
T TIGR01618        11 IPNMYLIYGKPGTGKTSTIKYLPG   34 (220)
T ss_pred             CCcEEEEECCCCCCHHHHHHhcCC
Confidence            367799999999999999999974

This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.

>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems

Probab=96.32  E-value=0.0027  Score=47.25  Aligned_cols=27  Identities=26%  Similarity=0.342  Sum_probs=23.4

Q ss_pred             CCCeEEEEEcCCCCCchHHHHHHHHHh
Q 030464           76 RRGVHWAFIGSPRAKKHVYAEMLSKLL  102 (177)
Q Consensus        76 ~~~~~IlIiGpPGSGKSTlA~~LAk~l  102 (177)
                      .++-++.|+|+.||||||+.+.|+..+
T Consensus         9 ~~g~~~~i~G~nGsGKStLl~~l~g~~   35 (137)
T PF00005_consen    9 KPGEIVAIVGPNGSGKSTLLKALAGLL   35 (137)
T ss_dssp             ETTSEEEEEESTTSSHHHHHHHHTTSS
T ss_pred             cCCCEEEEEccCCCccccceeeecccc
Confidence            466789999999999999999997754

ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....

>PRK07940 DNA polymerase III subunit delta'; Validated

Probab=96.31  E-value=0.017  Score=52.09  Aligned_cols=29  Identities=24%  Similarity=0.466  Sum_probs=25.7

Q ss_pred             CCeEEEEEcCCCCCchHHHHHHHHHhCCC
Q 030464           77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVP  105 (177)
Q Consensus        77 ~~~~IlIiGpPGSGKSTlA~~LAk~lgl~  105 (177)
                      .+.-++|.||||+||+++|+.+|+.+.+.
T Consensus        35 l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~   63 (394)
T PRK07940         35 MTHAWLFTGPPGSGRSVAARAFAAALQCT   63 (394)
T ss_pred             CCeEEEEECCCCCcHHHHHHHHHHHhCCC
Confidence            46679999999999999999999988664

>PRK14964 DNA polymerase III subunits gamma and tau; Provisional

Probab=96.31  E-value=0.0035  Score=58.08  Aligned_cols=29  Identities=17%  Similarity=0.196  Sum_probs=25.1

Q ss_pred             CCeEEEEEcCCCCCchHHHHHHHHHhCCC
Q 030464           77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVP  105 (177)
Q Consensus        77 ~~~~IlIiGpPGSGKSTlA~~LAk~lgl~  105 (177)
                      -+.-++|.||||+||||+|+.+|+.+++.
T Consensus        34 i~ha~Lf~Gp~G~GKTT~ArilAk~LnC~   62 (491)
T PRK14964         34 IPQSILLVGASGVGKTTCARIISLCLNCS   62 (491)
T ss_pred             CCceEEEECCCCccHHHHHHHHHHHHcCc
Confidence            34579999999999999999999987653

>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2

Probab=96.30  E-value=0.004  Score=47.83  Aligned_cols=25  Identities=16%  Similarity=0.040  Sum_probs=21.9

Q ss_pred             CCeEEEEEcCCCCCchHHHHHHHHH
Q 030464           77 RGVHWAFIGSPRAKKHVYAEMLSKL  101 (177)
Q Consensus        77 ~~~~IlIiGpPGSGKSTlA~~LAk~  101 (177)
                      ...+|+|+|+||+|||++..++...
T Consensus         2 ~~~ki~vvG~~~~GKSsl~~~~~~~   26 (167)
T cd01867           2 YLFKLLLIGDSGVGKSCLLLRFSED   26 (167)
T ss_pred             cceEEEEECCCCCCHHHHHHHHhhC
Confidence            3478999999999999999999754

Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi

>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily

Probab=96.30  E-value=0.004  Score=46.99  Aligned_cols=24  Identities=8%  Similarity=0.058  Sum_probs=21.1

Q ss_pred             CeEEEEEcCCCCCchHHHHHHHHH
Q 030464           78 GVHWAFIGSPRAKKHVYAEMLSKL  101 (177)
Q Consensus        78 ~~~IlIiGpPGSGKSTlA~~LAk~  101 (177)
                      ..+|+|+|+||+|||++..++...
T Consensus         2 ~~ki~i~G~~~~GKtsl~~~~~~~   25 (164)
T cd04145           2 TYKLVVVGGGGVGKSALTIQFIQS   25 (164)
T ss_pred             ceEEEEECCCCCcHHHHHHHHHhC
Confidence            468999999999999999988654

This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali

>cd00879 Sar1 Sar1 subfamily

Probab=96.30  E-value=0.0037  Score=48.90  Aligned_cols=25  Identities=24%  Similarity=0.349  Sum_probs=22.8

Q ss_pred             CCCeEEEEEcCCCCCchHHHHHHHH
Q 030464           76 RRGVHWAFIGSPRAKKHVYAEMLSK  100 (177)
Q Consensus        76 ~~~~~IlIiGpPGSGKSTlA~~LAk  100 (177)
                      .+..+|+|+|++||||||+..++..
T Consensus        17 ~~~~ki~ilG~~~~GKStLi~~l~~   41 (190)
T cd00879          17 NKEAKILFLGLDNAGKTTLLHMLKD   41 (190)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhc
Confidence            5678899999999999999999975

Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.

>cd04139 RalA_RalB RalA/RalB subfamily

Probab=96.30  E-value=0.0034  Score=47.17  Aligned_cols=21  Identities=10%  Similarity=0.048  Sum_probs=19.3

Q ss_pred             EEEEEcCCCCCchHHHHHHHH
Q 030464           80 HWAFIGSPRAKKHVYAEMLSK  100 (177)
Q Consensus        80 ~IlIiGpPGSGKSTlA~~LAk  100 (177)
                      +|+++|+||+||||+..++..
T Consensus         2 ki~~~G~~~~GKTsl~~~l~~   22 (164)
T cd04139           2 KVIVVGAGGVGKSALTLQFMY   22 (164)
T ss_pred             EEEEECCCCCCHHHHHHHHHh
Confidence            799999999999999999864

The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo

>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]

Probab=96.30  E-value=0.0093  Score=50.37  Aligned_cols=25  Identities=32%  Similarity=0.302  Sum_probs=23.0

Q ss_pred             EEEEEcCCCCCchHHHHHHHHHhCC
Q 030464           80 HWAFIGSPRAKKHVYAEMLSKLLEV  104 (177)
Q Consensus        80 ~IlIiGpPGSGKSTlA~~LAk~lgl  104 (177)
                      -++|.||||+||+|.|..||+.+..
T Consensus        26 alL~~Gp~G~Gktt~a~~lA~~l~~   50 (325)
T COG0470          26 ALLFYGPPGVGKTTAALALAKELLC   50 (325)
T ss_pred             eeeeeCCCCCCHHHHHHHHHHHHhC
Confidence            5999999999999999999998864

>TIGR00750 lao LAO/AO transport system ATPase

Probab=96.30  E-value=0.0041  Score=53.54  Aligned_cols=28  Identities=25%  Similarity=0.256  Sum_probs=24.0

Q ss_pred             cCCCeEEEEEcCCCCCchHHHHHHHHHh
Q 030464           75 RRRGVHWAFIGSPRAKKHVYAEMLSKLL  102 (177)
Q Consensus        75 ~~~~~~IlIiGpPGSGKSTlA~~LAk~l  102 (177)
                      ..++..|.|+|+|||||||++..|+..+
T Consensus        31 ~~~~~~i~i~G~~G~GKttl~~~l~~~~   58 (300)
T TIGR00750        31 TGNAHRVGITGTPGAGKSTLLEALGMEL   58 (300)
T ss_pred             cCCceEEEEECCCCCCHHHHHHHHHHHH
Confidence            3467889999999999999999988754

Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.

>PRK05973 replicative DNA helicase; Provisional

Probab=96.30  E-value=0.0031  Score=53.20  Aligned_cols=48  Identities=8%  Similarity=-0.044  Sum_probs=33.2

Q ss_pred             CCccccCccCcccCCCeEEEEEcCCCCCchHHHHHHHHHh---C--CCeeeCch
Q 030464           63 RSVTLPDTEGRERRRGVHWAFIGSPRAKKHVYAEMLSKLL---E--VPRISMSS  111 (177)
Q Consensus        63 ~~~~~~~~~~~~~~~~~~IlIiGpPGSGKSTlA~~LAk~l---g--l~~Is~~d  111 (177)
                      ++.|.-.-.| ...++-.++|.|+||+|||++|..++...   |  +.++++.+
T Consensus        50 ~~~p~~~l~G-Gl~~Gsl~LIaG~PG~GKT~lalqfa~~~a~~Ge~vlyfSlEe  102 (237)
T PRK05973         50 ATTPAEELFS-QLKPGDLVLLGARPGHGKTLLGLELAVEAMKSGRTGVFFTLEY  102 (237)
T ss_pred             CCCCHHHhcC-CCCCCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEEEeC
Confidence            4455333333 34577789999999999999999886643   4  44777653

>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA

Probab=96.29  E-value=0.0037  Score=60.14  Aligned_cols=26  Identities=23%  Similarity=0.262  Sum_probs=23.3

Q ss_pred             CCeEEEEEcCCCCCchHHHHHHHHHh
Q 030464           77 RGVHWAFIGSPRAKKHVYAEMLSKLL  102 (177)
Q Consensus        77 ~~~~IlIiGpPGSGKSTlA~~LAk~l  102 (177)
                      ...+++++||||+|||++++.||+++
T Consensus       202 ~~~n~lL~G~pG~GKT~l~~~la~~~  227 (731)
T TIGR02639       202 KKNNPLLVGEPGVGKTAIAEGLALRI  227 (731)
T ss_pred             CCCceEEECCCCCCHHHHHHHHHHHH
Confidence            34579999999999999999999987

>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain

Probab=96.27  E-value=0.0052  Score=41.89  Aligned_cols=31  Identities=16%  Similarity=0.113  Sum_probs=25.5

Q ss_pred             EEEEcCCCCCchHHHHHHHHHh---CCCeeeCch
Q 030464           81 WAFIGSPRAKKHVYAEMLSKLL---EVPRISMSS  111 (177)
Q Consensus        81 IlIiGpPGSGKSTlA~~LAk~l---gl~~Is~~d  111 (177)
                      |++.|.+|+||||++..|+..+   |...+-++|
T Consensus         2 ~~~~g~~G~Gktt~~~~l~~~l~~~g~~v~~~~d   35 (99)
T cd01983           2 IVVTGKGGVGKTTLAANLAAALAKRGKRVLLIDD   35 (99)
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHHCCCeEEEECC
Confidence            6888999999999999999886   666665554

Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.

>cd01918 HprK_C HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria

Probab=96.27  E-value=0.0058  Score=48.21  Aligned_cols=33  Identities=18%  Similarity=0.064  Sum_probs=27.0

Q ss_pred             CCeEEEEEcCCCCCchHHHHHHHHHhCCCeeeCc
Q 030464           77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMS  110 (177)
Q Consensus        77 ~~~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~  110 (177)
                      .+.-|+|+|++|+||||+|..|.++ |..+++-+
T Consensus        13 ~g~gvLi~G~sG~GKStlal~L~~~-g~~lvaDD   45 (149)
T cd01918          13 GGIGVLITGPSGIGKSELALELIKR-GHRLVADD   45 (149)
T ss_pred             CCEEEEEEcCCCCCHHHHHHHHHHc-CCeEEECC
Confidence            4677999999999999999988765 67777643

It catalyzes both the ATP-dependent phosphorylation of Ser-46 of HPr and its dephosphorylation by phosphorolysis. The latter reaction uses inorganic phosphate as substrate and produces pyrophosphate. Phosphoenolpyruvate carboxykinase (PEPCK) and the C-terminal catalytic domain of HprK/P are structurally similar with conserved active site residues suggesting these two phosphotransferases have related functions. The HprK/P N-terminal domain is structurally similar to the N-terminal domains of the MurE and MurF amino acid ligases.

>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11

Probab=96.27  E-value=0.0048  Score=53.40  Aligned_cols=26  Identities=12%  Similarity=0.144  Sum_probs=23.3

Q ss_pred             CCeEEEEEcCCCCCchHHHHHHHHHh
Q 030464           77 RGVHWAFIGSPRAKKHVYAEMLSKLL  102 (177)
Q Consensus        77 ~~~~IlIiGpPGSGKSTlA~~LAk~l  102 (177)
                      .+.+|+|.|++||||||+.+.|...+
T Consensus       143 ~~~~ili~G~tGsGKTTll~al~~~~  168 (308)
T TIGR02788       143 SRKNIIISGGTGSGKTTFLKSLVDEI  168 (308)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHccC
Confidence            56799999999999999999998765

The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.

>TIGR01420 pilT_fam pilus retraction protein PilT

Probab=96.26  E-value=0.0071  Score=53.12  Aligned_cols=35  Identities=9%  Similarity=-0.003  Sum_probs=26.3

Q ss_pred             CeEEEEEcCCCCCchHHHHHHHHHhC----CCeeeCchh
Q 030464           78 GVHWAFIGSPRAKKHVYAEMLSKLLE----VPRISMSSI  112 (177)
Q Consensus        78 ~~~IlIiGpPGSGKSTlA~~LAk~lg----l~~Is~~dL  112 (177)
                      .-.|+|.||+||||||+.+.|...+.    ..++.+.+-
T Consensus       122 ~g~ili~G~tGSGKTT~l~al~~~i~~~~~~~i~tiEdp  160 (343)
T TIGR01420       122 RGLILVTGPTGSGKSTTLASMIDYINKNAAGHIITIEDP  160 (343)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHhhCcCCCCEEEEEcCC
Confidence            45689999999999999999887553    335555543

This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.

>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily

Probab=96.26  E-value=0.0039  Score=48.26  Aligned_cols=23  Identities=17%  Similarity=0.094  Sum_probs=20.6

Q ss_pred             eEEEEEcCCCCCchHHHHHHHHH
Q 030464           79 VHWAFIGSPRAKKHVYAEMLSKL  101 (177)
Q Consensus        79 ~~IlIiGpPGSGKSTlA~~LAk~  101 (177)
                      .+|+|+|.||+||||+..++...
T Consensus         2 ~kv~l~G~~g~GKTtl~~~~~~~   24 (180)
T cd04137           2 RKIAVLGSRSVGKSSLTVQFVEG   24 (180)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhC
Confidence            57999999999999999999754

Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le

>PRK12422 chromosomal replication initiation protein; Provisional

Probab=96.26  E-value=0.0098  Score=54.32  Aligned_cols=35  Identities=9%  Similarity=0.069  Sum_probs=26.6

Q ss_pred             EEEEEcCCCCCchHHHHHHHHHh-----CCCeeeCchhhh
Q 030464           80 HWAFIGSPRAKKHVYAEMLSKLL-----EVPRISMSSIVR  114 (177)
Q Consensus        80 ~IlIiGpPGSGKSTlA~~LAk~l-----gl~~Is~~dLlr  114 (177)
                      -++|.|+||+|||++++.++..+     .+.+++..++..
T Consensus       143 pl~L~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~~~~f~~  182 (445)
T PRK12422        143 PIYLFGPEGSGKTHLMQAAVHALRESGGKILYVRSELFTE  182 (445)
T ss_pred             eEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEeeHHHHHH
Confidence            37899999999999999999864     344666655443

>PRK14957 DNA polymerase III subunits gamma and tau; Provisional

Probab=96.26  E-value=0.004  Score=58.36  Aligned_cols=27  Identities=22%  Similarity=0.354  Sum_probs=23.8

Q ss_pred             CeEEEEEcCCCCCchHHHHHHHHHhCC
Q 030464           78 GVHWAFIGSPRAKKHVYAEMLSKLLEV  104 (177)
Q Consensus        78 ~~~IlIiGpPGSGKSTlA~~LAk~lgl  104 (177)
                      +.-++|.||||+||||+|+.+|+.+++
T Consensus        38 ~ha~Lf~Gp~GvGKTTlAr~lAk~L~c   64 (546)
T PRK14957         38 HHAYLFTGTRGVGKTTLGRLLAKCLNC   64 (546)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence            345789999999999999999998875

>PRK13768 GTPase; Provisional

Probab=96.25  E-value=0.0041  Score=52.42  Aligned_cols=33  Identities=21%  Similarity=0.277  Sum_probs=25.3

Q ss_pred             CeEEEEEcCCCCCchHHHHHHHHHh---C--CCeeeCc
Q 030464           78 GVHWAFIGSPRAKKHVYAEMLSKLL---E--VPRISMS  110 (177)
Q Consensus        78 ~~~IlIiGpPGSGKSTlA~~LAk~l---g--l~~Is~~  110 (177)
                      +..|+|.|++|+||||++..++..+   |  +.+|+.+
T Consensus         2 ~~~i~v~G~~G~GKTt~~~~~~~~l~~~g~~v~~i~~D   39 (253)
T PRK13768          2 MYIVFFLGTAGSGKTTLTKALSDWLEEQGYDVAIVNLD   39 (253)
T ss_pred             cEEEEEECCCCccHHHHHHHHHHHHHhcCCceEEEECC
Confidence            4578899999999999999887765   3  3355554

>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily

Probab=96.25  E-value=0.0042  Score=47.96  Aligned_cols=23  Identities=13%  Similarity=0.079  Sum_probs=20.8

Q ss_pred             CeEEEEEcCCCCCchHHHHHHHH
Q 030464           78 GVHWAFIGSPRAKKHVYAEMLSK  100 (177)
Q Consensus        78 ~~~IlIiGpPGSGKSTlA~~LAk  100 (177)
                      -.+|+|+|++|+|||++..++..
T Consensus         2 ~~ki~vvG~~~vGKTsli~~~~~   24 (170)
T cd04115           2 IFKIIVIGDSNVGKTCLTYRFCA   24 (170)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHh
Confidence            46899999999999999999865

Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine

>COG1855 ATPase (PilT family) [General function prediction only]

Probab=96.25  E-value=0.0034  Score=57.97  Aligned_cols=23  Identities=26%  Similarity=0.453  Sum_probs=21.4

Q ss_pred             EEEEEcCCCCCchHHHHHHHHHh
Q 030464           80 HWAFIGSPRAKKHVYAEMLSKLL  102 (177)
Q Consensus        80 ~IlIiGpPGSGKSTlA~~LAk~l  102 (177)
                      -|+|-|+||+||||+|++||+-|
T Consensus       265 GILIAG~PGaGKsTFaqAlAefy  287 (604)
T COG1855         265 GILIAGAPGAGKSTFAQALAEFY  287 (604)
T ss_pred             ceEEecCCCCChhHHHHHHHHHH
Confidence            48999999999999999999976

>PRK00771 signal recognition particle protein Srp54; Provisional

Probab=96.24  E-value=0.0042  Score=56.73  Aligned_cols=27  Identities=15%  Similarity=0.185  Sum_probs=24.0

Q ss_pred             CCCeEEEEEcCCCCCchHHHHHHHHHh
Q 030464           76 RRGVHWAFIGSPRAKKHVYAEMLSKLL  102 (177)
Q Consensus        76 ~~~~~IlIiGpPGSGKSTlA~~LAk~l  102 (177)
                      .+|..|+|+|+||+||||++..||..+
T Consensus        93 ~~p~vI~lvG~~GsGKTTtaakLA~~L  119 (437)
T PRK00771         93 LKPQTIMLVGLQGSGKTTTAAKLARYF  119 (437)
T ss_pred             CCCeEEEEECCCCCcHHHHHHHHHHHH
Confidence            467789999999999999999998866

>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A

Probab=96.24  E-value=0.0038  Score=49.47  Aligned_cols=23  Identities=17%  Similarity=0.099  Sum_probs=16.7

Q ss_pred             EEEEEcCCCCCchHHHHHHHHHh
Q 030464           80 HWAFIGSPRAKKHVYAEMLSKLL  102 (177)
Q Consensus        80 ~IlIiGpPGSGKSTlA~~LAk~l  102 (177)
                      ..+|.||||+|||++...+...+
T Consensus        19 ~~~i~GpPGTGKT~~l~~~i~~~   41 (236)
T PF13086_consen   19 ITLIQGPPGTGKTTTLASIIAQL   41 (236)
T ss_dssp             -EEEE-STTSSHHHHHHHHHHHH
T ss_pred             CEEEECCCCCChHHHHHHHHHHh
Confidence            57889999999997766666654

>PRK14949 DNA polymerase III subunits gamma and tau; Provisional

Probab=96.23  E-value=0.0039  Score=61.52  Aligned_cols=28  Identities=21%  Similarity=0.288  Sum_probs=24.9

Q ss_pred             CeEEEEEcCCCCCchHHHHHHHHHhCCC
Q 030464           78 GVHWAFIGSPRAKKHVYAEMLSKLLEVP  105 (177)
Q Consensus        78 ~~~IlIiGpPGSGKSTlA~~LAk~lgl~  105 (177)
                      +.-++|.||||+||||+|+.||+.+++.
T Consensus        38 ~HAyLFtGPpGtGKTTLARiLAk~Lnce   65 (944)
T PRK14949         38 HHAYLFTGTRGVGKTSLARLFAKGLNCE   65 (944)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHhccCc
Confidence            4557999999999999999999998775

>PRK05564 DNA polymerase III subunit delta'; Validated

Probab=96.22  E-value=0.015  Score=50.11  Aligned_cols=29  Identities=14%  Similarity=0.090  Sum_probs=24.7

Q ss_pred             CCCeEEEEEcCCCCCchHHHHHHHHHhCC
Q 030464           76 RRGVHWAFIGSPRAKKHVYAEMLSKLLEV  104 (177)
Q Consensus        76 ~~~~~IlIiGpPGSGKSTlA~~LAk~lgl  104 (177)
                      ..++-++|.||+|+||+++|+.+++.+.+
T Consensus        24 ~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c   52 (313)
T PRK05564         24 RFSHAHIIVGEDGIGKSLLAKEIALKILG   52 (313)
T ss_pred             CCCceEEeECCCCCCHHHHHHHHHHHHcC
Confidence            34567899999999999999999998743

>PRK14969 DNA polymerase III subunits gamma and tau; Provisional

Probab=96.22  E-value=0.0043  Score=57.76  Aligned_cols=28  Identities=25%  Similarity=0.348  Sum_probs=24.8

Q ss_pred             CeEEEEEcCCCCCchHHHHHHHHHhCCC
Q 030464           78 GVHWAFIGSPRAKKHVYAEMLSKLLEVP  105 (177)
Q Consensus        78 ~~~IlIiGpPGSGKSTlA~~LAk~lgl~  105 (177)
                      +.-++|.||||+||||+|+.+|+.+++.
T Consensus        38 ~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~   65 (527)
T PRK14969         38 HHAYLFTGTRGVGKTTLARILAKSLNCE   65 (527)
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHhcCC
Confidence            4557999999999999999999999764

>cd04160 Arfrp1 Arfrp1 subfamily

Probab=96.22  E-value=0.0035  Score=47.65  Aligned_cols=23  Identities=26%  Similarity=0.361  Sum_probs=20.2

Q ss_pred             EEEEEcCCCCCchHHHHHHHHHh
Q 030464           80 HWAFIGSPRAKKHVYAEMLSKLL  102 (177)
Q Consensus        80 ~IlIiGpPGSGKSTlA~~LAk~l  102 (177)
                      +|+|+|++|+||||+..+|...+
T Consensus         1 ~i~~vG~~~~GKstLi~~l~~~~   23 (167)
T cd04160           1 SVLILGLDNAGKTTFLEQLKTLF   23 (167)
T ss_pred             CEEEEecCCCCHHHHHHHHhhhc
Confidence            58999999999999999997654

Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.

>cd04124 RabL2 RabL2 subfamily

Probab=96.22  E-value=0.0041  Score=47.68  Aligned_cols=22  Identities=18%  Similarity=0.212  Sum_probs=19.6

Q ss_pred             eEEEEEcCCCCCchHHHHHHHH
Q 030464           79 VHWAFIGSPRAKKHVYAEMLSK  100 (177)
Q Consensus        79 ~~IlIiGpPGSGKSTlA~~LAk  100 (177)
                      ++|+|+|.+|+||||+..++..
T Consensus         1 ~ki~vvG~~~vGKTsli~~~~~   22 (161)
T cd04124           1 VKIILLGDSAVGKSKLVERFLM   22 (161)
T ss_pred             CEEEEECCCCCCHHHHHHHHHh
Confidence            4799999999999999988864

RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b

>TIGR01166 cbiO cobalt transport protein ATP-binding subunit

Probab=96.21  E-value=0.0039  Score=49.49  Aligned_cols=34  Identities=26%  Similarity=0.238  Sum_probs=26.7

Q ss_pred             CccCcccCCCeEEEEEcCCCCCchHHHHHHHHHh
Q 030464           69 DTEGRERRRGVHWAFIGSPRAKKHVYAEMLSKLL  102 (177)
Q Consensus        69 ~~~~~~~~~~~~IlIiGpPGSGKSTlA~~LAk~l  102 (177)
                      +.......++-++.|+|+.||||||+.+.|+..+
T Consensus         9 ~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~   42 (190)
T TIGR01166         9 KGLNFAAERGEVLALLGANGAGKSTLLLHLNGLL   42 (190)
T ss_pred             cceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            3334445677789999999999999999997643

This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.

>PRK14490 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MobA; Provisional

Probab=96.21  E-value=0.0048  Score=54.69  Aligned_cols=30  Identities=20%  Similarity=0.148  Sum_probs=26.3

Q ss_pred             CCCeEEEEEcCCCCCchHHHHHHHHHhCCC
Q 030464           76 RRGVHWAFIGSPRAKKHVYAEMLSKLLEVP  105 (177)
Q Consensus        76 ~~~~~IlIiGpPGSGKSTlA~~LAk~lgl~  105 (177)
                      .++..|.|+|++||||||+++.|.+.+.-.
T Consensus         3 ~~~~~i~i~G~~gsGKTTl~~~l~~~l~~~   32 (369)
T PRK14490          3 FHPFEIAFCGYSGSGKTTLITALVRRLSER   32 (369)
T ss_pred             CCCEEEEEEeCCCCCHHHHHHHHHHHHhhC
Confidence            478899999999999999999999887633

>PRK07764 DNA polymerase III subunits gamma and tau; Validated

Probab=96.21  E-value=0.012  Score=57.62  Aligned_cols=29  Identities=21%  Similarity=0.253  Sum_probs=25.4

Q ss_pred             CCeEEEEEcCCCCCchHHHHHHHHHhCCC
Q 030464           77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVP  105 (177)
Q Consensus        77 ~~~~IlIiGpPGSGKSTlA~~LAk~lgl~  105 (177)
                      .++-++|.|++|+||||+|+.|++.+++.
T Consensus        36 i~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~   64 (824)
T PRK07764         36 INHAYLFSGPRGCGKTSSARILARSLNCV   64 (824)
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHhCcc
Confidence            44558999999999999999999999763

>PRK14958 DNA polymerase III subunits gamma and tau; Provisional

Probab=96.21  E-value=0.0042  Score=57.63  Aligned_cols=29  Identities=21%  Similarity=0.295  Sum_probs=25.4

Q ss_pred             CCeEEEEEcCCCCCchHHHHHHHHHhCCC
Q 030464           77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVP  105 (177)
Q Consensus        77 ~~~~IlIiGpPGSGKSTlA~~LAk~lgl~  105 (177)
                      .+.-++|.||||+||||+|+.+|+.+++.
T Consensus        37 l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~   65 (509)
T PRK14958         37 LHHAYLFTGTRGVGKTTISRILAKCLNCE   65 (509)
T ss_pred             CCeeEEEECCCCCCHHHHHHHHHHHhcCC
Confidence            34568999999999999999999999764

>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component

Probab=96.21  E-value=0.0033  Score=50.64  Aligned_cols=30  Identities=20%  Similarity=0.314  Sum_probs=24.1

Q ss_pred             CcccCCCeEEEEEcCCCCCchHHHHHHHHHh
Q 030464           72 GRERRRGVHWAFIGSPRAKKHVYAEMLSKLL  102 (177)
Q Consensus        72 ~~~~~~~~~IlIiGpPGSGKSTlA~~LAk~l  102 (177)
                      .....++ ++.|+|+.||||||+.+.|+..+
T Consensus        20 s~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~   49 (211)
T cd03264          20 SLTLGPG-MYGLLGPNGAGKTTLMRILATLT   49 (211)
T ss_pred             eEEEcCC-cEEEECCCCCCHHHHHHHHhCCC
Confidence            3333457 89999999999999999998643

The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK14960 DNA polymerase III subunits gamma and tau; Provisional

Probab=96.21  E-value=0.0045  Score=59.39  Aligned_cols=28  Identities=25%  Similarity=0.347  Sum_probs=25.3

Q ss_pred             CeEEEEEcCCCCCchHHHHHHHHHhCCC
Q 030464           78 GVHWAFIGSPRAKKHVYAEMLSKLLEVP  105 (177)
Q Consensus        78 ~~~IlIiGpPGSGKSTlA~~LAk~lgl~  105 (177)
                      +.-++|.||||+||||+|+.+|+.+++.
T Consensus        37 ~HAyLF~GPpGvGKTTlAriLAK~LnC~   64 (702)
T PRK14960         37 HHAYLFTGTRGVGKTTIARILAKCLNCE   64 (702)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHhCCC
Confidence            4678999999999999999999999874

>cd04177 RSR1 RSR1 subgroup

Probab=96.20  E-value=0.0043  Score=47.69  Aligned_cols=23  Identities=9%  Similarity=0.076  Sum_probs=20.6

Q ss_pred             eEEEEEcCCCCCchHHHHHHHHH
Q 030464           79 VHWAFIGSPRAKKHVYAEMLSKL  101 (177)
Q Consensus        79 ~~IlIiGpPGSGKSTlA~~LAk~  101 (177)
                      .+|+|+|.||+|||++..++.+.
T Consensus         2 ~ki~liG~~~~GKTsli~~~~~~   24 (168)
T cd04177           2 YKIVVLGAGGVGKSALTVQFVQN   24 (168)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhC
Confidence            47999999999999999998754

RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu

>cd01860 Rab5_related Rab5-related subfamily

Probab=96.20  E-value=0.0042  Score=46.92  Aligned_cols=23  Identities=13%  Similarity=0.147  Sum_probs=20.8

Q ss_pred             eEEEEEcCCCCCchHHHHHHHHH
Q 030464           79 VHWAFIGSPRAKKHVYAEMLSKL  101 (177)
Q Consensus        79 ~~IlIiGpPGSGKSTlA~~LAk~  101 (177)
                      .+|+|+|++|+|||++..++...
T Consensus         2 ~ki~v~G~~~~GKSsli~~l~~~   24 (163)
T cd01860           2 FKLVLLGDSSVGKSSLVLRFVKN   24 (163)
T ss_pred             eEEEEECCCCCCHHHHHHHHHcC
Confidence            58999999999999999998764

This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo

>PRK00440 rfc replication factor C small subunit; Reviewed

Probab=96.20  E-value=0.0048  Score=52.18  Aligned_cols=24  Identities=33%  Similarity=0.421  Sum_probs=21.8

Q ss_pred             eEEEEEcCCCCCchHHHHHHHHHh
Q 030464           79 VHWAFIGSPRAKKHVYAEMLSKLL  102 (177)
Q Consensus        79 ~~IlIiGpPGSGKSTlA~~LAk~l  102 (177)
                      +.++|.|+||+||||+++.+++.+
T Consensus        39 ~~~ll~G~~G~GKt~~~~~l~~~l   62 (319)
T PRK00440         39 PHLLFAGPPGTGKTTAALALAREL   62 (319)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHH
Confidence            358999999999999999999986

>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB

Probab=96.20  E-value=0.0052  Score=53.25  Aligned_cols=38  Identities=11%  Similarity=0.069  Sum_probs=29.0

Q ss_pred             CCeEEEEEcCCCCCchHHHHHHHHHh-----CCCeeeCchhhh
Q 030464           77 RGVHWAFIGSPRAKKHVYAEMLSKLL-----EVPRISMSSIVR  114 (177)
Q Consensus        77 ~~~~IlIiGpPGSGKSTlA~~LAk~l-----gl~~Is~~dLlr  114 (177)
                      ....|+|.|++||||||+++.|.+..     +...+.+.|-.+
T Consensus       131 ~~~~ilI~G~tGSGKTTll~al~~~i~~~~~~~ri~tiEd~~E  173 (299)
T TIGR02782       131 ARKNILVVGGTGSGKTTLANALLAEIAKNDPTDRVVIIEDTRE  173 (299)
T ss_pred             cCCeEEEECCCCCCHHHHHHHHHHHhhccCCCceEEEECCchh
Confidence            45689999999999999999998775     344566665433

The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.

>cd04123 Rab21 Rab21 subfamily

Probab=96.18  E-value=0.0043  Score=46.39  Aligned_cols=23  Identities=13%  Similarity=0.098  Sum_probs=20.3

Q ss_pred             eEEEEEcCCCCCchHHHHHHHHH
Q 030464           79 VHWAFIGSPRAKKHVYAEMLSKL  101 (177)
Q Consensus        79 ~~IlIiGpPGSGKSTlA~~LAk~  101 (177)
                      .+|+|+|++|+||||+..++...
T Consensus         1 ~ki~i~G~~~~GKStli~~l~~~   23 (162)
T cd04123           1 FKVVLLGEGRVGKTSLVLRYVEN   23 (162)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhC
Confidence            37999999999999999988754

The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site

>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane

Probab=96.18  E-value=0.0044  Score=49.84  Aligned_cols=30  Identities=17%  Similarity=0.129  Sum_probs=25.4

Q ss_pred             cccCCCeEEEEEcCCCCCchHHHHHHHHHh
Q 030464           73 RERRRGVHWAFIGSPRAKKHVYAEMLSKLL  102 (177)
Q Consensus        73 ~~~~~~~~IlIiGpPGSGKSTlA~~LAk~l  102 (177)
                      ....++-++.|+|+.||||||+.+.|+..+
T Consensus        22 l~i~~G~~~~i~G~nGsGKSTLl~~l~G~~   51 (214)
T cd03292          22 ISISAGEFVFLVGPSGAGKSTLLKLIYKEE   51 (214)
T ss_pred             EEEcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            344677889999999999999999998754

The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.

>CHL00095 clpC Clp protease ATP binding subunit

Probab=96.18  E-value=0.0052  Score=59.93  Aligned_cols=39  Identities=21%  Similarity=0.354  Sum_probs=29.6

Q ss_pred             ccCCCe-EEEEEcCCCCCchHHHHHHHHHh-----CCCeeeCchh
Q 030464           74 ERRRGV-HWAFIGSPRAKKHVYAEMLSKLL-----EVPRISMSSI  112 (177)
Q Consensus        74 ~~~~~~-~IlIiGpPGSGKSTlA~~LAk~l-----gl~~Is~~dL  112 (177)
                      .+.+|+ .++|+||||+|||++|+.||+.+     .+..+++++.
T Consensus       534 ~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~l~~~~~~~~~~d~s~~  578 (821)
T CHL00095        534 NPNRPIASFLFSGPTGVGKTELTKALASYFFGSEDAMIRLDMSEY  578 (821)
T ss_pred             CCCCCceEEEEECCCCCcHHHHHHHHHHHhcCCccceEEEEchhc
Confidence            345665 46899999999999999999986     2445666554

>cd03116 MobB Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes

Probab=96.17  E-value=0.0054  Score=48.55  Aligned_cols=25  Identities=24%  Similarity=0.238  Sum_probs=22.2

Q ss_pred             eEEEEEcCCCCCchHHHHHHHHHhC
Q 030464           79 VHWAFIGSPRAKKHVYAEMLSKLLE  103 (177)
Q Consensus        79 ~~IlIiGpPGSGKSTlA~~LAk~lg  103 (177)
                      ..|.|+|++||||||++++|.+.+.
T Consensus         2 ~vi~i~G~~gsGKTTli~~L~~~l~   26 (159)
T cd03116           2 KVIGFVGYSGSGKTTLLEKLIPALS   26 (159)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHH
Confidence            4688999999999999999998863

In E. coli, the synthesis of Moco involves genes from several loci: moa, mob, mod, moe and mog. The mob locus contains mobA and mobB genes. MobB catalyzes the attachment of the guanine dinucleotide to molybdopterin.

>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components

Probab=96.17  E-value=0.0047  Score=53.06  Aligned_cols=27  Identities=26%  Similarity=0.304  Sum_probs=22.3

Q ss_pred             CCCeEEEEEcCCCCCchHHHHHHHHHh
Q 030464           76 RRGVHWAFIGSPRAKKHVYAEMLSKLL  102 (177)
Q Consensus        76 ~~~~~IlIiGpPGSGKSTlA~~LAk~l  102 (177)
                      .+..+|-|+||||+||||+...|.+.+
T Consensus        27 g~a~~iGiTG~PGaGKSTli~~l~~~~   53 (266)
T PF03308_consen   27 GRAHVIGITGPPGAGKSTLIDALIREL   53 (266)
T ss_dssp             T-SEEEEEEE-TTSSHHHHHHHHHHHH
T ss_pred             CCceEEEeeCCCCCcHHHHHHHHHHHH
Confidence            467899999999999999999998765

In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.

>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=96.17  E-value=0.005  Score=58.33  Aligned_cols=40  Identities=18%  Similarity=0.214  Sum_probs=32.2

Q ss_pred             CCccccCccCcccCCCeEEEEEcCCCCCchHHHHHHHHHh
Q 030464           63 RSVTLPDTEGRERRRGVHWAFIGSPRAKKHVYAEMLSKLL  102 (177)
Q Consensus        63 ~~~~~~~~~~~~~~~~~~IlIiGpPGSGKSTlA~~LAk~l  102 (177)
                      .++||.+----.-..|.++.|+||||+||||+.+.|...+
T Consensus        54 lhVPmvdrtp~d~PPPfIvavvGPpGtGKsTLirSlVrr~   93 (1077)
T COG5192          54 LHVPMVDRTPKDLPPPFIVAVVGPPGTGKSTLIRSLVRRF   93 (1077)
T ss_pred             cccccccCCcccCCCCeEEEeecCCCCChhHHHHHHHHHH
Confidence            5688887655554566777799999999999999998876

>PRK04296 thymidine kinase; Provisional

Probab=96.16  E-value=0.0048  Score=49.68  Aligned_cols=25  Identities=8%  Similarity=-0.193  Sum_probs=21.8

Q ss_pred             CeEEEEEcCCCCCchHHHHHHHHHh
Q 030464           78 GVHWAFIGSPRAKKHVYAEMLSKLL  102 (177)
Q Consensus        78 ~~~IlIiGpPGSGKSTlA~~LAk~l  102 (177)
                      +..++++|+||+||||++..++..+
T Consensus         2 g~i~litG~~GsGKTT~~l~~~~~~   26 (190)
T PRK04296          2 AKLEFIYGAMNSGKSTELLQRAYNY   26 (190)
T ss_pred             cEEEEEECCCCCHHHHHHHHHHHHH
Confidence            3568899999999999999988875

>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively

Probab=96.16  E-value=0.0045  Score=49.75  Aligned_cols=35  Identities=14%  Similarity=0.110  Sum_probs=27.4

Q ss_pred             cCccCcccCCCeEEEEEcCCCCCchHHHHHHHHHh
Q 030464           68 PDTEGRERRRGVHWAFIGSPRAKKHVYAEMLSKLL  102 (177)
Q Consensus        68 ~~~~~~~~~~~~~IlIiGpPGSGKSTlA~~LAk~l  102 (177)
                      ++.......++-++.|+|+.||||||+.+.|+-.+
T Consensus        16 l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~   50 (213)
T cd03262          16 LKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLE   50 (213)
T ss_pred             ecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            33334445678889999999999999999998653

Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM

>TIGR00073 hypB hydrogenase accessory protein HypB

Probab=96.15  E-value=0.0054  Score=49.71  Aligned_cols=27  Identities=30%  Similarity=0.284  Sum_probs=23.8

Q ss_pred             CCeEEEEEcCCCCCchHHHHHHHHHhC
Q 030464           77 RGVHWAFIGSPRAKKHVYAEMLSKLLE  103 (177)
Q Consensus        77 ~~~~IlIiGpPGSGKSTlA~~LAk~lg  103 (177)
                      ..++|.|+|++||||||+.+++.+.++
T Consensus        21 ~~~~i~~~G~~gsGKTTli~~l~~~~~   47 (207)
T TIGR00073        21 GLVVLNFMSSPGSGKTTLIEKLIDNLK   47 (207)
T ss_pred             CcEEEEEECCCCCCHHHHHHHHHHHHh
Confidence            577889999999999999999988754

HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.

>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis

Probab=96.15  E-value=0.0053  Score=45.90  Aligned_cols=24  Identities=21%  Similarity=0.004  Sum_probs=21.0

Q ss_pred             CCCeEEEEEcCCCCCchHHHHHHH
Q 030464           76 RRGVHWAFIGSPRAKKHVYAEMLS   99 (177)
Q Consensus        76 ~~~~~IlIiGpPGSGKSTlA~~LA   99 (177)
                      ..+..++|+||+||||||+++.+.
T Consensus        13 ~~ge~v~I~GpSGsGKSTLl~~l~   36 (107)
T cd00820          13 YGKVGVLITGDSGIGKTELALELI   36 (107)
T ss_pred             cCCEEEEEEcCCCCCHHHHHHHhh
Confidence            345778999999999999999986

It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural

>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds

Probab=96.14  E-value=0.0045  Score=50.12  Aligned_cols=35  Identities=23%  Similarity=0.251  Sum_probs=27.8

Q ss_pred             cCccCcccCCCeEEEEEcCCCCCchHHHHHHHHHh
Q 030464           68 PDTEGRERRRGVHWAFIGSPRAKKHVYAEMLSKLL  102 (177)
Q Consensus        68 ~~~~~~~~~~~~~IlIiGpPGSGKSTlA~~LAk~l  102 (177)
                      +........++-.+.|+|+.||||||+.+.|+..+
T Consensus        18 l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~   52 (220)
T cd03263          18 VDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGEL   52 (220)
T ss_pred             ecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence            44444455677789999999999999999998653

Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.

>TIGR02236 recomb_radA DNA repair and recombination protein RadA

Probab=96.14  E-value=0.0063  Score=52.29  Aligned_cols=38  Identities=11%  Similarity=-0.006  Sum_probs=29.6

Q ss_pred             ccCCCeEEEEEcCCCCCchHHHHHHHHHh-----------CCCeeeCch
Q 030464           74 ERRRGVHWAFIGSPRAKKHVYAEMLSKLL-----------EVPRISMSS  111 (177)
Q Consensus        74 ~~~~~~~IlIiGpPGSGKSTlA~~LAk~l-----------gl~~Is~~d  111 (177)
                      ....+..+.|.|+||||||++|-.++-..           .+.+|+..+
T Consensus        91 Gi~~g~i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~te~  139 (310)
T TIGR02236        91 GIETQAITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYIDTEN  139 (310)
T ss_pred             CCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEECCC
Confidence            34567888999999999999999998652           345677655

This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.

>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids

Probab=96.14  E-value=0.004  Score=50.36  Aligned_cols=35  Identities=20%  Similarity=0.091  Sum_probs=27.5

Q ss_pred             cCccCcccCCCeEEEEEcCCCCCchHHHHHHHHHh
Q 030464           68 PDTEGRERRRGVHWAFIGSPRAKKHVYAEMLSKLL  102 (177)
Q Consensus        68 ~~~~~~~~~~~~~IlIiGpPGSGKSTlA~~LAk~l  102 (177)
                      ++.......++-.+.|+|+.||||||+.+.|+..+
T Consensus        16 l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~   50 (222)
T cd03224          16 LFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLL   50 (222)
T ss_pred             eeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCC
Confidence            33444455678899999999999999999997653

The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.

>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]

Probab=96.13  E-value=0.0048  Score=59.94  Aligned_cols=44  Identities=14%  Similarity=0.226  Sum_probs=37.5

Q ss_pred             CCCeEEEEEcCCCCCchHHHHHHHHHhCCCeeeCc--hhhhhccCC
Q 030464           76 RRGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMS--SIVRQDLSP  119 (177)
Q Consensus        76 ~~~~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~--dLlr~el~~  119 (177)
                      .+.--|++.||||+|||-+|+++|-++++.++|+.  +|+...+.+
T Consensus       703 rkRSGILLYGPPGTGKTLlAKAVATEcsL~FlSVKGPELLNMYVGq  748 (953)
T KOG0736|consen  703 RKRSGILLYGPPGTGKTLLAKAVATECSLNFLSVKGPELLNMYVGQ  748 (953)
T ss_pred             cccceeEEECCCCCchHHHHHHHHhhceeeEEeecCHHHHHHHhcc
Confidence            34567999999999999999999999999999997  577766543

>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE)

Probab=96.13  E-value=0.0049  Score=49.83  Aligned_cols=35  Identities=17%  Similarity=0.171  Sum_probs=27.4

Q ss_pred             cCccCcccCCCeEEEEEcCCCCCchHHHHHHHHHh
Q 030464           68 PDTEGRERRRGVHWAFIGSPRAKKHVYAEMLSKLL  102 (177)
Q Consensus        68 ~~~~~~~~~~~~~IlIiGpPGSGKSTlA~~LAk~l  102 (177)
                      ++.......++-.+.|+|+.||||||+.+.|+..+
T Consensus        20 l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~   54 (218)
T cd03255          20 LKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLD   54 (218)
T ss_pred             EeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCc
Confidence            33333444677889999999999999999998654

They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.

>PRK14088 dnaA chromosomal replication initiation protein; Provisional

Probab=96.13  E-value=0.0038  Score=56.81  Aligned_cols=36  Identities=11%  Similarity=0.112  Sum_probs=28.7

Q ss_pred             EEEEEcCCCCCchHHHHHHHHHh-------CCCeeeCchhhhh
Q 030464           80 HWAFIGSPRAKKHVYAEMLSKLL-------EVPRISMSSIVRQ  115 (177)
Q Consensus        80 ~IlIiGpPGSGKSTlA~~LAk~l-------gl~~Is~~dLlr~  115 (177)
                      .++|.|+||+|||++++.++..+       .+.+++..+++.+
T Consensus       132 ~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~~~~f~~~  174 (440)
T PRK14088        132 PLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKFLND  174 (440)
T ss_pred             eEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHH
Confidence            38999999999999999998864       3457777766554

>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]

Probab=96.12  E-value=0.0049  Score=51.95  Aligned_cols=33  Identities=15%  Similarity=0.138  Sum_probs=25.9

Q ss_pred             ccCccCcccCCCeEEEEEcCCCCCchHHHHHHH
Q 030464           67 LPDTEGRERRRGVHWAFIGSPRAKKHVYAEMLS   99 (177)
Q Consensus        67 ~~~~~~~~~~~~~~IlIiGpPGSGKSTlA~~LA   99 (177)
                      .+....-...++-.++|+||+||||||+.+-|.
T Consensus        17 VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN   49 (240)
T COG1126          17 VLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLN   49 (240)
T ss_pred             EecCcceeEcCCCEEEEECCCCCCHHHHHHHHH
Confidence            344444455688889999999999999998873

>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group

Probab=96.12  E-value=0.0042  Score=49.68  Aligned_cols=35  Identities=20%  Similarity=0.261  Sum_probs=27.4

Q ss_pred             cCccCcccCCCeEEEEEcCCCCCchHHHHHHHHHh
Q 030464           68 PDTEGRERRRGVHWAFIGSPRAKKHVYAEMLSKLL  102 (177)
Q Consensus        68 ~~~~~~~~~~~~~IlIiGpPGSGKSTlA~~LAk~l  102 (177)
                      ++.......++-++.|+|+.||||||+.+.|+..+
T Consensus        14 l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~   48 (206)
T TIGR03608        14 LDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLE   48 (206)
T ss_pred             EeceEEEEeCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence            33334444677889999999999999999998654

A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.

>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK

Probab=96.11  E-value=0.0045  Score=49.85  Aligned_cols=31  Identities=16%  Similarity=0.204  Sum_probs=25.9

Q ss_pred             CcccCCCeEEEEEcCCCCCchHHHHHHHHHh
Q 030464           72 GRERRRGVHWAFIGSPRAKKHVYAEMLSKLL  102 (177)
Q Consensus        72 ~~~~~~~~~IlIiGpPGSGKSTlA~~LAk~l  102 (177)
                      .....++-.+.|+|+.||||||+.+.|+..+
T Consensus        20 s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~   50 (213)
T cd03301          20 NLDIADGEFVVLLGPSGCGKTTTLRMIAGLE   50 (213)
T ss_pred             EEEEcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence            3344677889999999999999999998754

ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.

>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases

Probab=96.11  E-value=0.0053  Score=48.50  Aligned_cols=26  Identities=23%  Similarity=0.312  Sum_probs=23.2

Q ss_pred             cCCCeEEEEEcCCCCCchHHHHHHHH
Q 030464           75 RRRGVHWAFIGSPRAKKHVYAEMLSK  100 (177)
Q Consensus        75 ~~~~~~IlIiGpPGSGKSTlA~~LAk  100 (177)
                      +.+..+|+|+|++|+||||+..++..
T Consensus        14 ~~~~~~i~ivG~~~~GKTsli~~l~~   39 (184)
T smart00178       14 WNKHAKILFLGLDNAGKTTLLHMLKN   39 (184)
T ss_pred             ccccCEEEEECCCCCCHHHHHHHHhc
Confidence            35778999999999999999999975

Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.

>PRK10865 protein disaggregation chaperone; Provisional

Probab=96.11  E-value=0.0057  Score=60.06  Aligned_cols=40  Identities=23%  Similarity=0.452  Sum_probs=29.8

Q ss_pred             cCCCe-EEEEEcCCCCCchHHHHHHHHHh-----CCCeeeCchhhh
Q 030464           75 RRRGV-HWAFIGSPRAKKHVYAEMLSKLL-----EVPRISMSSIVR  114 (177)
Q Consensus        75 ~~~~~-~IlIiGpPGSGKSTlA~~LAk~l-----gl~~Is~~dLlr  114 (177)
                      |.+|+ .++|+||||+|||++|+.|++.+     .+..+++.++..
T Consensus       594 ~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~l~~~~~~~i~id~se~~~  639 (857)
T PRK10865        594 PNRPIGSFLFLGPTGVGKTELCKALANFMFDSDDAMVRIDMSEFME  639 (857)
T ss_pred             CCCCCceEEEECCCCCCHHHHHHHHHHHhhcCCCcEEEEEhHHhhh
Confidence            44554 57899999999999999999875     244566666543

>cd01864 Rab19 Rab19 subfamily

Probab=96.11  E-value=0.0052  Score=46.91  Aligned_cols=24  Identities=13%  Similarity=0.105  Sum_probs=20.7

Q ss_pred             CCeEEEEEcCCCCCchHHHHHHHH
Q 030464           77 RGVHWAFIGSPRAKKHVYAEMLSK  100 (177)
Q Consensus        77 ~~~~IlIiGpPGSGKSTlA~~LAk  100 (177)
                      +..+|+|+|++|+||||+..++..
T Consensus         2 ~~~kv~vvG~~~~GKTsli~~l~~   25 (165)
T cd01864           2 FLFKIILIGDSNVGKTCVVQRFKS   25 (165)
T ss_pred             ceeEEEEECCCCCCHHHHHHHHhh
Confidence            347899999999999999998843

Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein

Probab=96.11  E-value=0.004  Score=50.33  Aligned_cols=35  Identities=14%  Similarity=0.183  Sum_probs=27.4

Q ss_pred             cCccCcccCCCeEEEEEcCCCCCchHHHHHHHHHh
Q 030464           68 PDTEGRERRRGVHWAFIGSPRAKKHVYAEMLSKLL  102 (177)
Q Consensus        68 ~~~~~~~~~~~~~IlIiGpPGSGKSTlA~~LAk~l  102 (177)
                      ++.......++-.+.|+|+.||||||+.+.|+..+
T Consensus        19 l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~   53 (216)
T TIGR00960        19 LDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIE   53 (216)
T ss_pred             EEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            33333444677889999999999999999998754

>cd01863 Rab18 Rab18 subfamily

Probab=96.10  E-value=0.0049  Score=46.55  Aligned_cols=23  Identities=13%  Similarity=0.107  Sum_probs=20.3

Q ss_pred             eEEEEEcCCCCCchHHHHHHHHH
Q 030464           79 VHWAFIGSPRAKKHVYAEMLSKL  101 (177)
Q Consensus        79 ~~IlIiGpPGSGKSTlA~~LAk~  101 (177)
                      .+|+|+|+||+|||++..+|...
T Consensus         1 ~ki~v~G~~~~GKSsli~~l~~~   23 (161)
T cd01863           1 LKILLIGDSGVGKSSLLLRFTDD   23 (161)
T ss_pred             CEEEEECCCCCCHHHHHHHHHcC
Confidence            47999999999999999998753

Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos

>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein

Probab=96.10  E-value=0.005  Score=50.59  Aligned_cols=35  Identities=20%  Similarity=0.218  Sum_probs=27.2

Q ss_pred             cCccCcccCCCeEEEEEcCCCCCchHHHHHHHHHh
Q 030464           68 PDTEGRERRRGVHWAFIGSPRAKKHVYAEMLSKLL  102 (177)
Q Consensus        68 ~~~~~~~~~~~~~IlIiGpPGSGKSTlA~~LAk~l  102 (177)
                      ++.......++-.+.|+|+.||||||+.+.|+..+
T Consensus        18 l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~   52 (243)
T TIGR02315        18 LKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLV   52 (243)
T ss_pred             eecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCc
Confidence            33334444677889999999999999999998643

Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.

>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]

Probab=96.09  E-value=0.0054  Score=51.38  Aligned_cols=35  Identities=9%  Similarity=0.053  Sum_probs=27.6

Q ss_pred             CCeEEEEEcCCCCCchHHHHHHHHHhC---CCeeeCch
Q 030464           77 RGVHWAFIGSPRAKKHVYAEMLSKLLE---VPRISMSS  111 (177)
Q Consensus        77 ~~~~IlIiGpPGSGKSTlA~~LAk~lg---l~~Is~~d  111 (177)
                      ....|+|.|++||||||+.+.|.+...   ...+.+.+
T Consensus       126 ~~~~ili~G~tGSGKTT~l~all~~i~~~~~~iv~iEd  163 (270)
T PF00437_consen  126 GRGNILISGPTGSGKTTLLNALLEEIPPEDERIVTIED  163 (270)
T ss_dssp             TTEEEEEEESTTSSHHHHHHHHHHHCHTTTSEEEEEES
T ss_pred             cceEEEEECCCccccchHHHHHhhhccccccceEEecc
Confidence            467899999999999999999988652   34455555

These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....

>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine

Probab=96.09  E-value=0.0046  Score=50.55  Aligned_cols=32  Identities=25%  Similarity=0.274  Sum_probs=25.9

Q ss_pred             cCcccCCCeEEEEEcCCCCCchHHHHHHHHHh
Q 030464           71 EGRERRRGVHWAFIGSPRAKKHVYAEMLSKLL  102 (177)
Q Consensus        71 ~~~~~~~~~~IlIiGpPGSGKSTlA~~LAk~l  102 (177)
                      ......++-.+.|+|+.||||||+.+.|+..+
T Consensus        19 vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~   50 (236)
T cd03219          19 VSFSVRPGEIHGLIGPNGAGKTTLFNLISGFL   50 (236)
T ss_pred             ceEEecCCcEEEEECCCCCCHHHHHHHHcCCC
Confidence            33444677889999999999999999998643

MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).

>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases

Probab=96.08  E-value=0.0051  Score=48.47  Aligned_cols=25  Identities=12%  Similarity=0.238  Sum_probs=23.1

Q ss_pred             CCCeEEEEEcCCCCCchHHHHHHHH
Q 030464           76 RRGVHWAFIGSPRAKKHVYAEMLSK  100 (177)
Q Consensus        76 ~~~~~IlIiGpPGSGKSTlA~~LAk  100 (177)
                      .+..+|+|+|++||||||+..+|..
T Consensus        12 ~~~~~ililGl~~sGKTtll~~l~~   36 (175)
T PF00025_consen   12 KKEIKILILGLDGSGKTTLLNRLKN   36 (175)
T ss_dssp             TSEEEEEEEESTTSSHHHHHHHHHS
T ss_pred             CcEEEEEEECCCccchHHHHHHhhh
Confidence            6789999999999999999999975

This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....

>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport

Probab=96.08  E-value=0.0048  Score=50.44  Aligned_cols=35  Identities=17%  Similarity=0.180  Sum_probs=28.3

Q ss_pred             cCccCcccCCCeEEEEEcCCCCCchHHHHHHHHHh
Q 030464           68 PDTEGRERRRGVHWAFIGSPRAKKHVYAEMLSKLL  102 (177)
Q Consensus        68 ~~~~~~~~~~~~~IlIiGpPGSGKSTlA~~LAk~l  102 (177)
                      ++.......++-.+.|+|+.||||||+.+.|+..+
T Consensus        21 l~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~   55 (233)
T cd03258          21 LKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLE   55 (233)
T ss_pred             eecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            44444555688899999999999999999998754

Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd04154 Arl2 Arl2 subfamily

Probab=96.08  E-value=0.0057  Score=47.33  Aligned_cols=25  Identities=20%  Similarity=0.150  Sum_probs=21.9

Q ss_pred             CCeEEEEEcCCCCCchHHHHHHHHH
Q 030464           77 RGVHWAFIGSPRAKKHVYAEMLSKL  101 (177)
Q Consensus        77 ~~~~IlIiGpPGSGKSTlA~~LAk~  101 (177)
                      +..+|+|+|++|+|||++..++...
T Consensus        13 ~~~kv~ivG~~~~GKTsL~~~l~~~   37 (173)
T cd04154          13 REMRILILGLDNAGKTTILKKLLGE   37 (173)
T ss_pred             CccEEEEECCCCCCHHHHHHHHccC
Confidence            4578999999999999999998754

Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.

>PRK09361 radB DNA repair and recombination protein RadB; Provisional

Probab=96.08  E-value=0.0078  Score=49.02  Aligned_cols=36  Identities=22%  Similarity=0.159  Sum_probs=29.1

Q ss_pred             cCCCeEEEEEcCCCCCchHHHHHHHHHh-----CCCeeeCc
Q 030464           75 RRRGVHWAFIGSPRAKKHVYAEMLSKLL-----EVPRISMS  110 (177)
Q Consensus        75 ~~~~~~IlIiGpPGSGKSTlA~~LAk~l-----gl~~Is~~  110 (177)
                      ..++..+.|.|+||+|||++|..++...     ++.+++..
T Consensus        20 i~~g~i~~i~G~~GsGKT~l~~~la~~~~~~~~~v~yi~~e   60 (225)
T PRK09361         20 FERGTITQIYGPPGSGKTNICLQLAVEAAKNGKKVIYIDTE   60 (225)
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEECC
Confidence            3578889999999999999999998633     45677765

>TIGR02012 tigrfam_recA protein RecA

Probab=96.07  E-value=0.013  Score=51.49  Aligned_cols=52  Identities=13%  Similarity=-0.034  Sum_probs=36.0

Q ss_pred             CCccccCccC--cccCCCeEEEEEcCCCCCchHHHHHHHHHh---C--CCeeeCchhhh
Q 030464           63 RSVTLPDTEG--RERRRGVHWAFIGSPRAKKHVYAEMLSKLL---E--VPRISMSSIVR  114 (177)
Q Consensus        63 ~~~~~~~~~~--~~~~~~~~IlIiGpPGSGKSTlA~~LAk~l---g--l~~Is~~dLlr  114 (177)
                      .-.+.+|.-.  ....++-.+.|.|||||||||+|..++...   |  +.+|+..+.+.
T Consensus        38 TGi~~LD~~Lg~GGlp~G~iteI~G~~GsGKTtLaL~~~~~~~~~g~~v~yId~E~~~~   96 (321)
T TIGR02012        38 TGSLSLDLALGVGGLPRGRIIEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHALD   96 (321)
T ss_pred             CCCHHHHHHhcCCCCcCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEcccchhH
Confidence            4456666653  244578889999999999999998876543   2  44676655444

This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.

>TIGR02673 FtsE cell division ATP-binding protein FtsE

Probab=96.07  E-value=0.005  Score=49.60  Aligned_cols=31  Identities=23%  Similarity=0.258  Sum_probs=25.6

Q ss_pred             CcccCCCeEEEEEcCCCCCchHHHHHHHHHh
Q 030464           72 GRERRRGVHWAFIGSPRAKKHVYAEMLSKLL  102 (177)
Q Consensus        72 ~~~~~~~~~IlIiGpPGSGKSTlA~~LAk~l  102 (177)
                      .....++-++.|+|+.||||||+.+.|+..+
T Consensus        22 s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~   52 (214)
T TIGR02673        22 SLHIRKGEFLFLTGPSGAGKTTLLKLLYGAL   52 (214)
T ss_pred             eEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            3344677889999999999999999998653

This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.

>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=96.07  E-value=0.005  Score=49.53  Aligned_cols=34  Identities=21%  Similarity=0.295  Sum_probs=26.8

Q ss_pred             CccCcccCCCeEEEEEcCCCCCchHHHHHHHHHh
Q 030464           69 DTEGRERRRGVHWAFIGSPRAKKHVYAEMLSKLL  102 (177)
Q Consensus        69 ~~~~~~~~~~~~IlIiGpPGSGKSTlA~~LAk~l  102 (177)
                      +........+-++.|+|+.||||||+.+.|+..+
T Consensus        18 ~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~   51 (211)
T cd03225          18 DDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLL   51 (211)
T ss_pred             cceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence            3333444677889999999999999999998654

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>PRK13833 conjugal transfer protein TrbB; Provisional

Probab=96.07  E-value=0.0065  Score=53.44  Aligned_cols=35  Identities=11%  Similarity=0.125  Sum_probs=27.4

Q ss_pred             CCeEEEEEcCCCCCchHHHHHHHHHh-----CCCeeeCch
Q 030464           77 RGVHWAFIGSPRAKKHVYAEMLSKLL-----EVPRISMSS  111 (177)
Q Consensus        77 ~~~~IlIiGpPGSGKSTlA~~LAk~l-----gl~~Is~~d  111 (177)
                      ...+|+|.|++||||||+.+.|....     +...+.+.|
T Consensus       143 ~~~nilI~G~tGSGKTTll~aL~~~i~~~~~~~rivtiEd  182 (323)
T PRK13833        143 SRLNIVISGGTGSGKTTLANAVIAEIVASAPEDRLVILED  182 (323)
T ss_pred             cCCeEEEECCCCCCHHHHHHHHHHHHhcCCCCceEEEecC
Confidence            35689999999999999999998764     234566554

>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup

Probab=96.06  E-value=0.0053  Score=49.50  Aligned_cols=35  Identities=17%  Similarity=0.202  Sum_probs=27.3

Q ss_pred             cCccCcccCCCeEEEEEcCCCCCchHHHHHHHHHh
Q 030464           68 PDTEGRERRRGVHWAFIGSPRAKKHVYAEMLSKLL  102 (177)
Q Consensus        68 ~~~~~~~~~~~~~IlIiGpPGSGKSTlA~~LAk~l  102 (177)
                      ++.......++-++.|+|+.||||||+.+.|+..+
T Consensus        16 l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~   50 (213)
T cd03259          16 LDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLE   50 (213)
T ss_pred             ecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence            33334445677889999999999999999998643

This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK08727 hypothetical protein; Validated

Probab=96.06  E-value=0.0052  Score=50.98  Aligned_cols=33  Identities=12%  Similarity=0.068  Sum_probs=25.0

Q ss_pred             EEEEcCCCCCchHHHHHHHHHh---CC--CeeeCchhh
Q 030464           81 WAFIGSPRAKKHVYAEMLSKLL---EV--PRISMSSIV  113 (177)
Q Consensus        81 IlIiGpPGSGKSTlA~~LAk~l---gl--~~Is~~dLl  113 (177)
                      ++|.|++|+|||++++.++...   |.  .++++.++.
T Consensus        44 l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~~~~~~~   81 (233)
T PRK08727         44 LYLSGPAGTGKTHLALALCAAAEQAGRSSAYLPLQAAA   81 (233)
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEeHHHhh
Confidence            8999999999999999986542   33  466665543

>cd01870 RhoA_like RhoA-like subfamily

Probab=96.06  E-value=0.0051  Score=47.23  Aligned_cols=23  Identities=17%  Similarity=0.157  Sum_probs=20.9

Q ss_pred             eEEEEEcCCCCCchHHHHHHHHH
Q 030464           79 VHWAFIGSPRAKKHVYAEMLSKL  101 (177)
Q Consensus        79 ~~IlIiGpPGSGKSTlA~~LAk~  101 (177)
                      .+|+|+|++|||||++..++.+.
T Consensus         2 ~ki~iiG~~~~GKTsl~~~~~~~   24 (175)
T cd01870           2 KKLVIVGDGACGKTCLLIVFSKD   24 (175)
T ss_pred             cEEEEECCCCCCHHHHHHHHhcC
Confidence            57999999999999999999874

The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl

>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]

Probab=96.05  E-value=0.0074  Score=58.69  Aligned_cols=47  Identities=23%  Similarity=0.279  Sum_probs=36.5

Q ss_pred             ccCcccCCCeEE-EEEcCCCCCchHHHHHHHHHhC-----CCeeeCchhhhhc
Q 030464           70 TEGRERRRGVHW-AFIGSPRAKKHVYAEMLSKLLE-----VPRISMSSIVRQD  116 (177)
Q Consensus        70 ~~~~~~~~~~~I-lIiGpPGSGKSTlA~~LAk~lg-----l~~Is~~dLlr~e  116 (177)
                      +....|.+|+-. +|.||.|+|||.+|+.||+.+.     +..|+|++...+.
T Consensus       512 aGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~Lfg~e~aliR~DMSEy~EkH  564 (786)
T COG0542         512 AGLGDPNRPIGSFLFLGPTGVGKTELAKALAEALFGDEQALIRIDMSEYMEKH  564 (786)
T ss_pred             cCCCCCCCCceEEEeeCCCcccHHHHHHHHHHHhcCCCccceeechHHHHHHH
Confidence            444556788755 5689999999999999999874     6678888876653

>cd01868 Rab11_like Rab11-like

Probab=96.05  E-value=0.0055  Score=46.59  Aligned_cols=23  Identities=13%  Similarity=0.173  Sum_probs=20.6

Q ss_pred             eEEEEEcCCCCCchHHHHHHHHH
Q 030464           79 VHWAFIGSPRAKKHVYAEMLSKL  101 (177)
Q Consensus        79 ~~IlIiGpPGSGKSTlA~~LAk~  101 (177)
                      .+|+|+|+||||||++..++...
T Consensus         4 ~ki~vvG~~~~GKSsli~~l~~~   26 (165)
T cd01868           4 FKIVLIGDSGVGKSNLLSRFTRN   26 (165)
T ss_pred             eEEEEECCCCCCHHHHHHHHhcC
Confidence            58999999999999999999753

Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP

>cd04127 Rab27A Rab27a subfamily

Probab=96.04  E-value=0.0055  Score=47.34  Aligned_cols=24  Identities=8%  Similarity=0.141  Sum_probs=21.3

Q ss_pred             CCeEEEEEcCCCCCchHHHHHHHH
Q 030464           77 RGVHWAFIGSPRAKKHVYAEMLSK  100 (177)
Q Consensus        77 ~~~~IlIiGpPGSGKSTlA~~LAk  100 (177)
                      .-++|+|+|++|+|||++..++..
T Consensus         3 ~~~ki~ivG~~~vGKTsli~~~~~   26 (180)
T cd04127           3 YLIKFLALGDSGVGKTSFLYQYTD   26 (180)
T ss_pred             ceEEEEEECCCCCCHHHHHHHHhc
Confidence            347899999999999999999865

The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated

>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system

Probab=96.04  E-value=0.0052  Score=50.35  Aligned_cols=33  Identities=24%  Similarity=0.229  Sum_probs=26.4

Q ss_pred             ccCcccCCCeEEEEEcCCCCCchHHHHHHHHHh
Q 030464           70 TEGRERRRGVHWAFIGSPRAKKHVYAEMLSKLL  102 (177)
Q Consensus        70 ~~~~~~~~~~~IlIiGpPGSGKSTlA~~LAk~l  102 (177)
                      .......++-++.|+|+.||||||+.+.|+..+
T Consensus        19 ~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~   51 (241)
T cd03256          19 DVSLSINPGEFVALIGPSGAGKSTLLRCLNGLV   51 (241)
T ss_pred             cceEEEcCCCEEEEECCCCCCHHHHHHHHhCCc
Confidence            333444677889999999999999999998643

Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity

Probab=96.04  E-value=0.0058  Score=49.17  Aligned_cols=31  Identities=16%  Similarity=0.285  Sum_probs=25.6

Q ss_pred             CcccCCCeEEEEEcCCCCCchHHHHHHHHHh
Q 030464           72 GRERRRGVHWAFIGSPRAKKHVYAEMLSKLL  102 (177)
Q Consensus        72 ~~~~~~~~~IlIiGpPGSGKSTlA~~LAk~l  102 (177)
                      ......+-++.|+|+.||||||+.+.|+..+
T Consensus        20 ~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~   50 (210)
T cd03269          20 SFSVEKGEIFGLLGPNGAGKTTTIRMILGII   50 (210)
T ss_pred             EEEEcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence            3344677889999999999999999998653

In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop

Probab=96.04  E-value=0.0078  Score=46.00  Aligned_cols=30  Identities=20%  Similarity=0.257  Sum_probs=24.8

Q ss_pred             CCCeEEEEEcCCCCCchHHHHHHHHHhCCC
Q 030464           76 RRGVHWAFIGSPRAKKHVYAEMLSKLLEVP  105 (177)
Q Consensus        76 ~~~~~IlIiGpPGSGKSTlA~~LAk~lgl~  105 (177)
                      ..+..|++.|+=|+||||+++.+++.+|+.
T Consensus        13 ~~g~vi~L~GdLGaGKTtf~r~l~~~lg~~   42 (123)
T PF02367_consen   13 KPGDVILLSGDLGAGKTTFVRGLARALGID   42 (123)
T ss_dssp             SS-EEEEEEESTTSSHHHHHHHHHHHTT--
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHHHcCCC
Confidence            356778999999999999999999999875

They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.

>cd04135 Tc10 TC10 subfamily

Probab=96.04  E-value=0.0055  Score=47.00  Aligned_cols=23  Identities=9%  Similarity=0.072  Sum_probs=20.3

Q ss_pred             eEEEEEcCCCCCchHHHHHHHHH
Q 030464           79 VHWAFIGSPRAKKHVYAEMLSKL  101 (177)
Q Consensus        79 ~~IlIiGpPGSGKSTlA~~LAk~  101 (177)
                      ++|+|+|++|+|||++..++...
T Consensus         1 ~ki~i~G~~~~GKTsl~~~~~~~   23 (174)
T cd04135           1 LKCVVVGDGAVGKTCLLMSYAND   23 (174)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhC
Confidence            37999999999999999988654

TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti

>TIGR01425 SRP54_euk signal recognition particle protein SRP54

Probab=96.04  E-value=0.0061  Score=55.61  Aligned_cols=34  Identities=12%  Similarity=0.066  Sum_probs=26.7

Q ss_pred             CCeEEEEEcCCCCCchHHHHHHHHHh---C--CCeeeCc
Q 030464           77 RGVHWAFIGSPRAKKHVYAEMLSKLL---E--VPRISMS  110 (177)
Q Consensus        77 ~~~~IlIiGpPGSGKSTlA~~LAk~l---g--l~~Is~~  110 (177)
                      ++..|+|+|++||||||.+..||..+   |  +..++.+
T Consensus        99 ~~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D  137 (429)
T TIGR01425        99 KQNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCAD  137 (429)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCc
Confidence            46788999999999999999998765   3  3455553

This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.

>cd04159 Arl10_like Arl10-like subfamily

Probab=96.03  E-value=0.0047  Score=45.60  Aligned_cols=21  Identities=10%  Similarity=0.199  Sum_probs=19.2

Q ss_pred             EEEEcCCCCCchHHHHHHHHH
Q 030464           81 WAFIGSPRAKKHVYAEMLSKL  101 (177)
Q Consensus        81 IlIiGpPGSGKSTlA~~LAk~  101 (177)
                      |+|+|++|+|||++.++|...
T Consensus         2 i~i~G~~~~GKssl~~~l~~~   22 (159)
T cd04159           2 ITLVGLQNSGKTTLVNVIAGG   22 (159)
T ss_pred             EEEEcCCCCCHHHHHHHHccC
Confidence            789999999999999999764

Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.

>cd04101 RabL4 RabL4 (Rab-like4) subfamily

Probab=96.03  E-value=0.0052  Score=46.57  Aligned_cols=22  Identities=23%  Similarity=0.549  Sum_probs=19.8

Q ss_pred             eEEEEEcCCCCCchHHHHHHHH
Q 030464           79 VHWAFIGSPRAKKHVYAEMLSK  100 (177)
Q Consensus        79 ~~IlIiGpPGSGKSTlA~~LAk  100 (177)
                      ++|+|+|.+|||||++..++..
T Consensus         1 ~ki~vvG~~~~GKtsl~~~l~~   22 (164)
T cd04101           1 LRCAVVGDPAVGKTAFVQMFHS   22 (164)
T ss_pred             CEEEEECCCCCCHHHHHHHHhc
Confidence            4799999999999999998864

RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.

>KOG3327 consensus Thymidylate kinase/adenylate kinase [Nucleotide transport and metabolism]

Probab=96.03  E-value=0.028  Score=46.38  Aligned_cols=85  Identities=20%  Similarity=0.316  Sum_probs=59.4

Q ss_pred             CCCeEEEEEcCCCCCchHHHHHHHHHhCCCeeeCchhhhhccCCCCchHHHHHHHHHcCCcchHHHH-----------HH
Q 030464           76 RRGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDII-----------FG  144 (177)
Q Consensus        76 ~~~~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~dLlr~el~~~s~lgk~i~~~l~~G~~Ipdeli-----------~~  144 (177)
                      .++..|++-|.-+|||||+|..|.+.+ .+-.....++ ..-...+++|+.+..++.+...+||+.+           +.
T Consensus         3 ~rg~liV~eGlDrsgKstQ~~~l~~~l-~~~~~~~~l~-~FP~Rst~iGk~i~~YL~k~~dl~d~~iHLlFSAnRwe~~~   80 (208)
T KOG3327|consen    3 IRGALIVLEGLDRSGKSTQCGKLVESL-IPGLDPAELL-RFPERSTSIGKLIDGYLRKKSDLPDHTIHLLFSANRWEHVS   80 (208)
T ss_pred             CCccEEeeeccccCCceeehhHHHHHH-HhccChHHhh-hcchhcccccHHHHHHHHhccCCcHHHHHHHhccchhhHHH
Confidence            477889999999999999999998887 2222222222 2223456788999999988888887643           45


Q ss_pred             HHHHHHHccCCCCcceEEEeCCC
Q 030464          145 LLSKRLEDGYYRGEIGFILDGLP  167 (177)
Q Consensus       145 Ll~~~L~~~~~~~~~G~ILDGfP  167 (177)
                      +|++.+...     ..+|+|-|-
T Consensus        81 ~i~e~l~kg-----~~~ivDRY~   98 (208)
T KOG3327|consen   81 LIKEKLAKG-----TTLIVDRYS   98 (208)
T ss_pred             HHHHHHhcC-----CeEEEecce
Confidence            666666653     467888763

>PRK09302 circadian clock protein KaiC; Reviewed

Probab=96.03  E-value=0.0096  Score=54.72  Aligned_cols=50  Identities=10%  Similarity=0.019  Sum_probs=34.3

Q ss_pred             CccccCccCc-ccCCCeEEEEEcCCCCCchHHHHHHHHH----hC--CCeeeCchhh
Q 030464           64 SVTLPDTEGR-ERRRGVHWAFIGSPRAKKHVYAEMLSKL----LE--VPRISMSSIV  113 (177)
Q Consensus        64 ~~~~~~~~~~-~~~~~~~IlIiGpPGSGKSTlA~~LAk~----lg--l~~Is~~dLl  113 (177)
                      -.+.++.... ...++-.++|.|+||+|||++|.+++..    .|  +.+|++.+-.
T Consensus        16 GI~~LD~~l~GG~p~Gs~~li~G~pGsGKT~l~~qf~~~~~~~~ge~~lyis~ee~~   72 (509)
T PRK09302         16 GIEGFDDITHGGLPKGRPTLVSGTAGTGKTLFALQFLVNGIKRFDEPGVFVTFEESP   72 (509)
T ss_pred             CchhHHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCEEEEEccCCH
Confidence            3445555432 3457888999999999999999987542    13  4577776533

>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family

Probab=96.03  E-value=0.0065  Score=51.33  Aligned_cols=37  Identities=11%  Similarity=0.015  Sum_probs=28.9

Q ss_pred             ccCCCeEEEEEcCCCCCchHHHHHHHHHh-----CCCeeeCc
Q 030464           74 ERRRGVHWAFIGSPRAKKHVYAEMLSKLL-----EVPRISMS  110 (177)
Q Consensus        74 ~~~~~~~IlIiGpPGSGKSTlA~~LAk~l-----gl~~Is~~  110 (177)
                      ...++..++|.|+||+|||++|.+++...     .+.++++.
T Consensus        32 Gip~gs~~lI~G~pGtGKT~l~~qf~~~~a~~Ge~vlyis~E   73 (259)
T TIGR03878        32 GIPAYSVINITGVSDTGKSLMVEQFAVTQASRGNPVLFVTVE   73 (259)
T ss_pred             CeECCcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEEec
Confidence            34578889999999999999999986632     35577764

This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.

>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein

Probab=96.03  E-value=0.0063  Score=51.56  Aligned_cols=27  Identities=19%  Similarity=0.217  Sum_probs=22.7

Q ss_pred             CCCeEEEEEcCCCCCchHHHHHHHHHh
Q 030464           76 RRGVHWAFIGSPRAKKHVYAEMLSKLL  102 (177)
Q Consensus        76 ~~~~~IlIiGpPGSGKSTlA~~LAk~l  102 (177)
                      ..+.+++|+|++|||||+++..|-..+
T Consensus        11 ~~~fr~viIG~sGSGKT~li~~lL~~~   37 (241)
T PF04665_consen   11 KDPFRMVIIGKSGSGKTTLIKSLLYYL   37 (241)
T ss_pred             CCCceEEEECCCCCCHHHHHHHHHHhh
Confidence            356799999999999999998886654

This is thought to be an ATPase involved in viral DNA packaging [].

>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response

Probab=96.03  E-value=0.013  Score=51.62  Aligned_cols=51  Identities=14%  Similarity=-0.018  Sum_probs=34.8

Q ss_pred             CCccccCccCc--ccCCCeEEEEEcCCCCCchHHHHHHHHHh---C--CCeeeCchhh
Q 030464           63 RSVTLPDTEGR--ERRRGVHWAFIGSPRAKKHVYAEMLSKLL---E--VPRISMSSIV  113 (177)
Q Consensus        63 ~~~~~~~~~~~--~~~~~~~IlIiGpPGSGKSTlA~~LAk~l---g--l~~Is~~dLl  113 (177)
                      .-.+.+|.-..  ...++-.+.|.|||||||||+|-.++...   |  +.+|+..+-+
T Consensus        38 TGi~~LD~~Lg~GGlp~G~iteI~Gp~GsGKTtLal~~~~~~~~~g~~~vyId~E~~~   95 (325)
T cd00983          38 TGSLSLDIALGIGGYPKGRIIEIYGPESSGKTTLALHAIAEAQKLGGTVAFIDAEHAL   95 (325)
T ss_pred             CCCHHHHHHhcCCCccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEECccccH
Confidence            44555555422  34577788899999999999999987543   3  4466665433

RecA couples ATP hydrolysis to DNA strand exchange.

>PHA02624 large T antigen; Provisional

Probab=96.02  E-value=0.0076  Score=57.30  Aligned_cols=35  Identities=20%  Similarity=0.295  Sum_probs=29.7

Q ss_pred             CCCeEEEEEcCCCCCchHHHHHHHHHhCCCeeeCc
Q 030464           76 RRGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMS  110 (177)
Q Consensus        76 ~~~~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~  110 (177)
                      .+.-.|+|.||||+||||+|..|.+.+|-..+++.
T Consensus       429 PKk~~il~~GPpnTGKTtf~~sLl~~L~G~vlsVN  463 (647)
T PHA02624        429 PKRRYWLFKGPVNSGKTTLAAALLDLCGGKSLNVN  463 (647)
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHcCCeEEEee
Confidence            45558899999999999999999999966667764

>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=96.02  E-value=0.0046  Score=52.03  Aligned_cols=36  Identities=19%  Similarity=0.228  Sum_probs=28.5

Q ss_pred             cccCccCcccCCCeEEEEEcCCCCCchHHHHHHHHH
Q 030464           66 TLPDTEGRERRRGVHWAFIGSPRAKKHVYAEMLSKL  101 (177)
Q Consensus        66 ~~~~~~~~~~~~~~~IlIiGpPGSGKSTlA~~LAk~  101 (177)
                      +.+.....+..++-.++|+|++||||||+.+.|+--
T Consensus        18 ~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GL   53 (235)
T COG1122          18 AALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGL   53 (235)
T ss_pred             eeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCc
Confidence            344445556678889999999999999999988654

>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases

Probab=96.02  E-value=0.0058  Score=46.19  Aligned_cols=22  Identities=14%  Similarity=0.101  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCCchHHHHHHHHH
Q 030464           80 HWAFIGSPRAKKHVYAEMLSKL  101 (177)
Q Consensus        80 ~IlIiGpPGSGKSTlA~~LAk~  101 (177)
                      +|+|+|++|||||+++.++...
T Consensus         1 Ki~vvG~~~vGKtsl~~~~~~~   22 (162)
T PF00071_consen    1 KIVVVGDSGVGKTSLINRLING   22 (162)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHS
T ss_pred             CEEEECCCCCCHHHHHHHHHhh
Confidence            6899999999999999999774

This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....

>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids

Probab=96.02  E-value=0.0059  Score=49.78  Aligned_cols=34  Identities=18%  Similarity=0.180  Sum_probs=26.7

Q ss_pred             CccCcccCCCeEEEEEcCCCCCchHHHHHHHHHh
Q 030464           69 DTEGRERRRGVHWAFIGSPRAKKHVYAEMLSKLL  102 (177)
Q Consensus        69 ~~~~~~~~~~~~IlIiGpPGSGKSTlA~~LAk~l  102 (177)
                      ........++-++.|+|+.||||||+.+.|+..+
T Consensus        17 ~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~   50 (232)
T cd03218          17 NGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLV   50 (232)
T ss_pred             ccceeEecCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence            3333444677889999999999999999998643

The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.

>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases

Probab=96.01  E-value=0.0072  Score=50.44  Aligned_cols=52  Identities=13%  Similarity=0.130  Sum_probs=38.5

Q ss_pred             cCCCCccccCccCcccCCCeEEEEEcCCCCCchHHHHHHHHHh----C--CCeeeCch
Q 030464           60 DSLRSVTLPDTEGRERRRGVHWAFIGSPRAKKHVYAEMLSKLL----E--VPRISMSS  111 (177)
Q Consensus        60 ~~~~~~~~~~~~~~~~~~~~~IlIiGpPGSGKSTlA~~LAk~l----g--l~~Is~~d  111 (177)
                      +.....+.++.-.....++-.++|.|+||+|||+++..++...    |  +.++++.+
T Consensus        12 ~~~tg~~~Ld~~~gG~~~g~~~~i~g~~G~GKT~l~~~~~~~~~~~~g~~vl~iS~E~   69 (271)
T cd01122          12 EVWWPFPVLNKLTKGLRKGELIILTAGTGVGKTTFLREYALDLITQHGVRVGTISLEE   69 (271)
T ss_pred             CCCCCcceeeeeeEEEcCCcEEEEEcCCCCCHHHHHHHHHHHHHHhcCceEEEEEccc
Confidence            3345677777766556677789999999999999998876542    3  55777753

Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.

>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional

Probab=96.01  E-value=0.0058  Score=50.49  Aligned_cols=35  Identities=20%  Similarity=0.131  Sum_probs=27.4

Q ss_pred             cCccCcccCCCeEEEEEcCCCCCchHHHHHHHHHh
Q 030464           68 PDTEGRERRRGVHWAFIGSPRAKKHVYAEMLSKLL  102 (177)
Q Consensus        68 ~~~~~~~~~~~~~IlIiGpPGSGKSTlA~~LAk~l  102 (177)
                      ++.......++-++.|+|+.||||||+.+.|+..+
T Consensus        19 l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~   53 (250)
T PRK11264         19 LHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLE   53 (250)
T ss_pred             eccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            33334445678889999999999999999998653

>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE)

Probab=96.01  E-value=0.0058  Score=49.55  Aligned_cols=35  Identities=20%  Similarity=0.279  Sum_probs=27.5

Q ss_pred             cCccCcccCCCeEEEEEcCCCCCchHHHHHHHHHh
Q 030464           68 PDTEGRERRRGVHWAFIGSPRAKKHVYAEMLSKLL  102 (177)
Q Consensus        68 ~~~~~~~~~~~~~IlIiGpPGSGKSTlA~~LAk~l  102 (177)
                      +..-.....++-.+.|+|+.||||||+.+.|+..+
T Consensus        21 l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~   55 (228)
T cd03257          21 LDDVSFSIKKGETLGLVGESGSGKSTLARAILGLL   55 (228)
T ss_pred             ecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            33334445678899999999999999999998654

The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.

>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules

Probab=96.00  E-value=0.0049  Score=50.51  Aligned_cols=34  Identities=26%  Similarity=0.343  Sum_probs=27.0

Q ss_pred             CccCcccCCCeEEEEEcCCCCCchHHHHHHHHHh
Q 030464           69 DTEGRERRRGVHWAFIGSPRAKKHVYAEMLSKLL  102 (177)
Q Consensus        69 ~~~~~~~~~~~~IlIiGpPGSGKSTlA~~LAk~l  102 (177)
                      +.......++-.+.|+|+.||||||+.+.|+..+
T Consensus        17 ~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~   50 (235)
T cd03261          17 KGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLL   50 (235)
T ss_pred             eeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            3334445677889999999999999999998653

The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family

Probab=96.00  E-value=0.0081  Score=59.01  Aligned_cols=25  Identities=16%  Similarity=0.061  Sum_probs=22.8

Q ss_pred             CeEEEEEcCCCCCchHHHHHHHHHh
Q 030464           78 GVHWAFIGSPRAKKHVYAEMLSKLL  102 (177)
Q Consensus        78 ~~~IlIiGpPGSGKSTlA~~LAk~l  102 (177)
                      ..+++|+|+||+|||++++.||+.+
T Consensus       208 ~~n~lLvG~pGvGKTal~~~La~~i  232 (852)
T TIGR03345       208 QNNPILTGEAGVGKTAVVEGLALRI  232 (852)
T ss_pred             cCceeEECCCCCCHHHHHHHHHHHH
Confidence            3578999999999999999999986

Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.

>cd04114 Rab30 Rab30 subfamily

Probab=96.00  E-value=0.0077  Score=45.83  Aligned_cols=24  Identities=13%  Similarity=0.140  Sum_probs=21.4

Q ss_pred             CCeEEEEEcCCCCCchHHHHHHHH
Q 030464           77 RGVHWAFIGSPRAKKHVYAEMLSK  100 (177)
Q Consensus        77 ~~~~IlIiGpPGSGKSTlA~~LAk  100 (177)
                      +-.+|+|+|++|+||||+.+.+..
T Consensus         6 ~~~~v~v~G~~~~GKSsli~~l~~   29 (169)
T cd04114           6 FLFKIVLIGNAGVGKTCLVRRFTQ   29 (169)
T ss_pred             ceeEEEEECCCCCCHHHHHHHHHh
Confidence            457899999999999999999874

Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB

Probab=96.00  E-value=0.0057  Score=48.00  Aligned_cols=22  Identities=27%  Similarity=0.348  Sum_probs=20.0

Q ss_pred             EEEEcCCCCCchHHHHHHHHHh
Q 030464           81 WAFIGSPRAKKHVYAEMLSKLL  102 (177)
Q Consensus        81 IlIiGpPGSGKSTlA~~LAk~l  102 (177)
                      |.|+|++||||||++.+|.+.+
T Consensus         2 i~i~G~~gsGKTtl~~~l~~~l   23 (155)
T TIGR00176         2 LQIVGPKNSGKTTLIERLVKAL   23 (155)
T ss_pred             EEEECCCCCCHHHHHHHHHHHH
Confidence            6789999999999999998875

This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.

>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily

Probab=96.00  E-value=0.0063  Score=46.40  Aligned_cols=22  Identities=14%  Similarity=0.172  Sum_probs=20.2

Q ss_pred             eEEEEEcCCCCCchHHHHHHHH
Q 030464           79 VHWAFIGSPRAKKHVYAEMLSK  100 (177)
Q Consensus        79 ~~IlIiGpPGSGKSTlA~~LAk  100 (177)
                      .+|+|+|+||+|||++..++..
T Consensus         3 ~ki~i~G~~~vGKSsli~~~~~   24 (166)
T cd01869           3 FKLLLIGDSGVGKSCLLLRFAD   24 (166)
T ss_pred             EEEEEECCCCCCHHHHHHHHhc
Confidence            5799999999999999999975

Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t

>cd01865 Rab3 Rab3 subfamily

Probab=96.00  E-value=0.0058  Score=46.81  Aligned_cols=23  Identities=13%  Similarity=0.122  Sum_probs=20.8

Q ss_pred             eEEEEEcCCCCCchHHHHHHHHH
Q 030464           79 VHWAFIGSPRAKKHVYAEMLSKL  101 (177)
Q Consensus        79 ~~IlIiGpPGSGKSTlA~~LAk~  101 (177)
                      .+|+|+|++|+|||++..++...
T Consensus         2 ~ki~i~G~~~~GKSsli~~l~~~   24 (165)
T cd01865           2 FKLLIIGNSSVGKTSFLFRYADD   24 (165)
T ss_pred             eEEEEECCCCCCHHHHHHHHhcC
Confidence            58999999999999999999763

The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot

>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]

Probab=95.99  E-value=0.0055  Score=48.93  Aligned_cols=24  Identities=13%  Similarity=0.022  Sum_probs=21.9

Q ss_pred             eEEEEEcCCCCCchHHHHHHHHHh
Q 030464           79 VHWAFIGSPRAKKHVYAEMLSKLL  102 (177)
Q Consensus        79 ~~IlIiGpPGSGKSTlA~~LAk~l  102 (177)
                      .+|+|+|++|+||||++.++.+..
T Consensus         6 ~kivv~G~~g~GKTtl~~~l~~~~   29 (219)
T COG1100           6 FKIVVLGDGGVGKTTLLNRLVGDE   29 (219)
T ss_pred             EEEEEEcCCCccHHHHHHHHhcCc
Confidence            899999999999999999998754

>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein

Probab=95.99  E-value=0.0062  Score=49.29  Aligned_cols=35  Identities=20%  Similarity=0.153  Sum_probs=27.3

Q ss_pred             cCccCcccCCCeEEEEEcCCCCCchHHHHHHHHHh
Q 030464           68 PDTEGRERRRGVHWAFIGSPRAKKHVYAEMLSKLL  102 (177)
Q Consensus        68 ~~~~~~~~~~~~~IlIiGpPGSGKSTlA~~LAk~l  102 (177)
                      ++.......++-++.|+|+.||||||+.+.|+..+
T Consensus        21 l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~   55 (221)
T TIGR02211        21 LKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLD   55 (221)
T ss_pred             EeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence            33333444677889999999999999999998653

This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.

>cd01861 Rab6 Rab6 subfamily

Probab=95.99  E-value=0.0057  Score=46.10  Aligned_cols=21  Identities=14%  Similarity=0.202  Sum_probs=18.8

Q ss_pred             EEEEEcCCCCCchHHHHHHHH
Q 030464           80 HWAFIGSPRAKKHVYAEMLSK  100 (177)
Q Consensus        80 ~IlIiGpPGSGKSTlA~~LAk  100 (177)
                      +|+|+|+|||||||+..++-.
T Consensus         2 ki~liG~~~~GKSsli~~l~~   22 (161)
T cd01861           2 KLVFLGDQSVGKTSIITRFMY   22 (161)
T ss_pred             EEEEECCCCCCHHHHHHHHHc
Confidence            799999999999999988743

Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate

>PHA03132 thymidine kinase; Provisional

Probab=95.98  E-value=0.075  Score=50.30  Aligned_cols=58  Identities=16%  Similarity=0.071  Sum_probs=37.8

Q ss_pred             CCeEEEEEcCCCCCchHHHHHHHHHhCCCeeeCchhhhhccCCCCchHHHHHHHHHcC
Q 030464           77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRG  134 (177)
Q Consensus        77 ~~~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~dLlr~el~~~s~lgk~i~~~l~~G  134 (177)
                      +.+.|+|-|.-||||||+++.|++.+|..++.+.+=+..-..--+.+++.+.+.+.++
T Consensus       256 ~~~fIv~EGidGsGKTTlik~L~e~lg~~Vi~t~EP~~~W~~vy~n~l~~I~~~~~r~  313 (580)
T PHA03132        256 PACFLFLEGVMGVGKTTLLNHMRGILGDNVLVFPEPMRYWTEVYSNCLKEIYKLVKPG  313 (580)
T ss_pred             ceEEEEEECCCCCCHHHHHHHHHHHhCCceEEEeCCCCchhhccccHHHHHHHHHhcc
Confidence            5788999999999999999999998855544433211100000134567777776554

>COG3911 Predicted ATPase [General function prediction only]

Probab=95.98  E-value=0.0066  Score=48.69  Aligned_cols=42  Identities=17%  Similarity=0.185  Sum_probs=29.1

Q ss_pred             CCeEEEEEcCCCCCchHHHHHHHHHhCCCeeeCc-hhhhhccC
Q 030464           77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMS-SIVRQDLS  118 (177)
Q Consensus        77 ~~~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~-dLlr~el~  118 (177)
                      +.+++++.|.||+||||+...|+..=-..+-..+ +++..+-.
T Consensus         8 R~~~fIltGgpGaGKTtLL~aLa~~Gfatvee~~r~ii~~es~   50 (183)
T COG3911           8 RHKRFILTGGPGAGKTTLLAALARAGFATVEEAGRDIIALESA   50 (183)
T ss_pred             cceEEEEeCCCCCcHHHHHHHHHHcCceeeccchhhHHHHHHh
Confidence            4567889999999999999999876323333333 46665543

>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]

Probab=95.98  E-value=0.0067  Score=50.12  Aligned_cols=36  Identities=17%  Similarity=0.228  Sum_probs=26.9

Q ss_pred             eEEEEEcCCCCCchHHHHHHHH----HhCCCeeeCchhhhh
Q 030464           79 VHWAFIGSPRAKKHVYAEMLSK----LLEVPRISMSSIVRQ  115 (177)
Q Consensus        79 ~~IlIiGpPGSGKSTlA~~LAk----~lgl~~Is~~dLlr~  115 (177)
                      .+|-|.||||||||++..++.+    +|.+.+|. +|++.+
T Consensus        14 ~~i~v~Gp~GSGKTaLie~~~~~L~~~~~~aVI~-~Di~t~   53 (202)
T COG0378          14 LRIGVGGPPGSGKTALIEKTLRALKDEYKIAVIT-GDIYTK   53 (202)
T ss_pred             EEEEecCCCCcCHHHHHHHHHHHHHhhCCeEEEe-ceeech
Confidence            7888999999999999777655    45666666 355553

>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE

Probab=95.98  E-value=0.0055  Score=49.98  Aligned_cols=35  Identities=20%  Similarity=0.135  Sum_probs=27.5

Q ss_pred             cCccCcccCCCeEEEEEcCCCCCchHHHHHHHHHh
Q 030464           68 PDTEGRERRRGVHWAFIGSPRAKKHVYAEMLSKLL  102 (177)
Q Consensus        68 ~~~~~~~~~~~~~IlIiGpPGSGKSTlA~~LAk~l  102 (177)
                      ++.......++-++.|+|+.||||||+.+.|+..+
T Consensus        16 l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~   50 (230)
T TIGR03410        16 LRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLL   50 (230)
T ss_pred             ecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            33334445678899999999999999999998654

Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.

>PRK13541 cytochrome c biogenesis protein CcmA; Provisional

Probab=95.97  E-value=0.0065  Score=48.54  Aligned_cols=28  Identities=11%  Similarity=0.054  Sum_probs=24.2

Q ss_pred             cCCCeEEEEEcCCCCCchHHHHHHHHHh
Q 030464           75 RRRGVHWAFIGSPRAKKHVYAEMLSKLL  102 (177)
Q Consensus        75 ~~~~~~IlIiGpPGSGKSTlA~~LAk~l  102 (177)
                      ..++-++.|+|++||||||+.+.|+..+
T Consensus        23 i~~Ge~~~l~G~nGsGKSTLl~~l~G~~   50 (195)
T PRK13541         23 FLPSAITYIKGANGCGKSSLLRMIAGIM   50 (195)
T ss_pred             EcCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence            3567789999999999999999998754

>TIGR01978 sufC FeS assembly ATPase SufC

Probab=95.97  E-value=0.0061  Score=49.98  Aligned_cols=32  Identities=13%  Similarity=0.177  Sum_probs=26.3

Q ss_pred             ccCcccCCCeEEEEEcCCCCCchHHHHHHHHH
Q 030464           70 TEGRERRRGVHWAFIGSPRAKKHVYAEMLSKL  101 (177)
Q Consensus        70 ~~~~~~~~~~~IlIiGpPGSGKSTlA~~LAk~  101 (177)
                      .......++-.+.|+|+.||||||+.+.|+..
T Consensus        18 ~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl   49 (243)
T TIGR01978        18 GVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGH   49 (243)
T ss_pred             ccceEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence            33344567788999999999999999999875

SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.

>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment

Probab=95.96  E-value=0.0068  Score=47.82  Aligned_cols=31  Identities=16%  Similarity=0.167  Sum_probs=25.5

Q ss_pred             CcccCCCeEEEEEcCCCCCchHHHHHHHHHh
Q 030464           72 GRERRRGVHWAFIGSPRAKKHVYAEMLSKLL  102 (177)
Q Consensus        72 ~~~~~~~~~IlIiGpPGSGKSTlA~~LAk~l  102 (177)
                      .....++-.+.|+|+.|+||||+.+.|+..+
T Consensus        20 ~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~   50 (178)
T cd03229          20 SLNIEAGEIVALLGPSGSGKSTLLRCIAGLE   50 (178)
T ss_pred             eEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            3344677889999999999999999998543

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK10865 protein disaggregation chaperone; Provisional

Probab=95.95  E-value=0.0064  Score=59.68  Aligned_cols=24  Identities=25%  Similarity=0.310  Sum_probs=22.3

Q ss_pred             eEEEEEcCCCCCchHHHHHHHHHh
Q 030464           79 VHWAFIGSPRAKKHVYAEMLSKLL  102 (177)
Q Consensus        79 ~~IlIiGpPGSGKSTlA~~LAk~l  102 (177)
                      .+++++|+||+|||++++.|++..
T Consensus       200 ~n~lL~G~pGvGKT~l~~~la~~i  223 (857)
T PRK10865        200 NNPVLIGEPGVGKTAIVEGLAQRI  223 (857)
T ss_pred             CceEEECCCCCCHHHHHHHHHHHh
Confidence            478999999999999999999987

>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional

Probab=95.95  E-value=0.0059  Score=49.98  Aligned_cols=34  Identities=15%  Similarity=0.155  Sum_probs=27.0

Q ss_pred             cCccCcccCCCeEEEEEcCCCCCchHHHHHHHHH
Q 030464           68 PDTEGRERRRGVHWAFIGSPRAKKHVYAEMLSKL  101 (177)
Q Consensus        68 ~~~~~~~~~~~~~IlIiGpPGSGKSTlA~~LAk~  101 (177)
                      ++.......++-.+.|+|+.||||||+.+.|+..
T Consensus        23 l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~   56 (225)
T PRK10247         23 LNNISFSLRAGEFKLITGPSGCGKSTLLKIVASL   56 (225)
T ss_pred             eeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcc
Confidence            3344444567788999999999999999999864

>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient

Probab=95.94  E-value=0.0068  Score=49.34  Aligned_cols=33  Identities=21%  Similarity=0.248  Sum_probs=26.9

Q ss_pred             ccCcccCCCeEEEEEcCCCCCchHHHHHHHHHh
Q 030464           70 TEGRERRRGVHWAFIGSPRAKKHVYAEMLSKLL  102 (177)
Q Consensus        70 ~~~~~~~~~~~IlIiGpPGSGKSTlA~~LAk~l  102 (177)
                      .......++-.+.|+|+.||||||+.+.|+..+
T Consensus        18 ~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~   50 (227)
T cd03260          18 DISLDIPKGEITALIGPSGCGKSTLLRLLNRLN   50 (227)
T ss_pred             eeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence            333444677889999999999999999998765

The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).

>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis

Probab=95.93  E-value=0.007  Score=47.69  Aligned_cols=31  Identities=23%  Similarity=0.335  Sum_probs=25.6

Q ss_pred             CcccCCCeEEEEEcCCCCCchHHHHHHHHHh
Q 030464           72 GRERRRGVHWAFIGSPRAKKHVYAEMLSKLL  102 (177)
Q Consensus        72 ~~~~~~~~~IlIiGpPGSGKSTlA~~LAk~l  102 (177)
                      .....++-.+.|+|+.||||||+++.|+...
T Consensus        22 ~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~   52 (178)
T cd03247          22 SLELKQGEKIALLGRSGSGKSTLLQLLTGDL   52 (178)
T ss_pred             EEEEcCCCEEEEECCCCCCHHHHHHHHhccC
Confidence            3344577889999999999999999998754

The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.

>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]

Probab=95.93  E-value=0.006  Score=51.94  Aligned_cols=35  Identities=20%  Similarity=0.274  Sum_probs=29.5

Q ss_pred             cccCccCcccCCCeEEEEEcCCCCCchHHHHHHHH
Q 030464           66 TLPDTEGRERRRGVHWAFIGSPRAKKHVYAEMLSK  100 (177)
Q Consensus        66 ~~~~~~~~~~~~~~~IlIiGpPGSGKSTlA~~LAk  100 (177)
                      +.++.-+....++-.+-|+|++||||||+++.|+-
T Consensus        21 ~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~G   55 (252)
T COG1124          21 HALNNVSLEIERGETLGIVGESGSGKSTLARLLAG   55 (252)
T ss_pred             hhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhc
Confidence            45666666677888999999999999999999975

>cd01878 HflX HflX subfamily

Probab=95.92  E-value=0.0058  Score=48.64  Aligned_cols=24  Identities=21%  Similarity=0.124  Sum_probs=21.6

Q ss_pred             CeEEEEEcCCCCCchHHHHHHHHH
Q 030464           78 GVHWAFIGSPRAKKHVYAEMLSKL  101 (177)
Q Consensus        78 ~~~IlIiGpPGSGKSTlA~~LAk~  101 (177)
                      -++|+|+|+|||||||+...|...
T Consensus        41 ~~~I~iiG~~g~GKStLl~~l~~~   64 (204)
T cd01878          41 IPTVALVGYTNAGKSTLFNALTGA   64 (204)
T ss_pred             CCeEEEECCCCCCHHHHHHHHhcc
Confidence            468999999999999999998775

A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.

>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=95.92  E-value=0.0067  Score=48.69  Aligned_cols=31  Identities=26%  Similarity=0.289  Sum_probs=25.6

Q ss_pred             CcccCCCeEEEEEcCCCCCchHHHHHHHHHh
Q 030464           72 GRERRRGVHWAFIGSPRAKKHVYAEMLSKLL  102 (177)
Q Consensus        72 ~~~~~~~~~IlIiGpPGSGKSTlA~~LAk~l  102 (177)
                      .....++-++.|+|+.||||||+.+.|+..+
T Consensus        20 ~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~   50 (205)
T cd03226          20 SLDLYAGEIIALTGKNGAGKTTLAKILAGLI   50 (205)
T ss_pred             eEEEcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            3344577889999999999999999998753

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters

Probab=95.92  E-value=0.0059  Score=49.23  Aligned_cols=33  Identities=24%  Similarity=0.258  Sum_probs=26.3

Q ss_pred             ccCcccCCCeEEEEEcCCCCCchHHHHHHHHHh
Q 030464           70 TEGRERRRGVHWAFIGSPRAKKHVYAEMLSKLL  102 (177)
Q Consensus        70 ~~~~~~~~~~~IlIiGpPGSGKSTlA~~LAk~l  102 (177)
                      .......++-++.|+|+.||||||+.+.|+..+
T Consensus        17 ~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~   49 (213)
T cd03235          17 DVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLL   49 (213)
T ss_pred             cceeEEcCCCEEEEECCCCCCHHHHHHHHcCCC
Confidence            333444677889999999999999999997653

This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.

>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional

Probab=95.91  E-value=0.0055  Score=50.23  Aligned_cols=35  Identities=20%  Similarity=0.159  Sum_probs=27.3

Q ss_pred             cCccCcccCCCeEEEEEcCCCCCchHHHHHHHHHh
Q 030464           68 PDTEGRERRRGVHWAFIGSPRAKKHVYAEMLSKLL  102 (177)
Q Consensus        68 ~~~~~~~~~~~~~IlIiGpPGSGKSTlA~~LAk~l  102 (177)
                      ++.......++-.+.|+|+.||||||+.+.|+..+
T Consensus        25 l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~   59 (233)
T PRK11629         25 LHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLD   59 (233)
T ss_pred             EEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence            33344445677789999999999999999998654

>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional

Probab=95.90  E-value=0.0066  Score=50.22  Aligned_cols=35  Identities=17%  Similarity=0.210  Sum_probs=27.6

Q ss_pred             cCccCcccCCCeEEEEEcCCCCCchHHHHHHHHHh
Q 030464           68 PDTEGRERRRGVHWAFIGSPRAKKHVYAEMLSKLL  102 (177)
Q Consensus        68 ~~~~~~~~~~~~~IlIiGpPGSGKSTlA~~LAk~l  102 (177)
                      ++.......++-++.|+|+.||||||+.+.|+..+
T Consensus        19 l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~   53 (250)
T PRK14247         19 LDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLI   53 (250)
T ss_pred             eecceeEEcCCCEEEEECCCCCCHHHHHHHHhccC
Confidence            33334445677889999999999999999998754

>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion

Probab=95.90  E-value=0.0062  Score=48.87  Aligned_cols=35  Identities=11%  Similarity=-0.106  Sum_probs=27.8

Q ss_pred             ccccCccCcccCCCeEEEEEcCCCCCchHHHHHHH
Q 030464           65 VTLPDTEGRERRRGVHWAFIGSPRAKKHVYAEMLS   99 (177)
Q Consensus        65 ~~~~~~~~~~~~~~~~IlIiGpPGSGKSTlA~~LA   99 (177)
                      .+.++.-.....++-++.|+||.||||||+.+.+.
T Consensus         8 ~~~l~~isl~i~~G~~~~l~G~nG~GKSTLl~~il   42 (176)
T cd03238           8 VHNLQNLDVSIPLNVLVVVTGVSGSGKSTLVNEGL   42 (176)
T ss_pred             eeeecceEEEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence            34455555556788899999999999999999885

Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.

>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively

Probab=95.90  E-value=0.0057  Score=49.66  Aligned_cols=35  Identities=14%  Similarity=0.182  Sum_probs=27.2

Q ss_pred             cCccCcccCCCeEEEEEcCCCCCchHHHHHHHHHh
Q 030464           68 PDTEGRERRRGVHWAFIGSPRAKKHVYAEMLSKLL  102 (177)
Q Consensus        68 ~~~~~~~~~~~~~IlIiGpPGSGKSTlA~~LAk~l  102 (177)
                      ++.-.....++-++.|+|+.||||||+.+.|+..+
T Consensus        20 l~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~   54 (220)
T cd03293          20 LEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLE   54 (220)
T ss_pred             EeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence            33334445677889999999999999999998653

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system

Probab=95.90  E-value=0.0072  Score=49.66  Aligned_cols=33  Identities=24%  Similarity=0.289  Sum_probs=26.5

Q ss_pred             ccCcccCCCeEEEEEcCCCCCchHHHHHHHHHh
Q 030464           70 TEGRERRRGVHWAFIGSPRAKKHVYAEMLSKLL  102 (177)
Q Consensus        70 ~~~~~~~~~~~IlIiGpPGSGKSTlA~~LAk~l  102 (177)
                      .-.....++-++.|+|+.||||||+.+.|+..+
T Consensus        19 ~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~   51 (236)
T TIGR03864        19 DVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLY   51 (236)
T ss_pred             eeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCc
Confidence            333445678889999999999999999998643

Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.

>cd04116 Rab9 Rab9 subfamily

Probab=95.90  E-value=0.007  Score=46.32  Aligned_cols=24  Identities=8%  Similarity=0.034  Sum_probs=21.3

Q ss_pred             CCeEEEEEcCCCCCchHHHHHHHH
Q 030464           77 RGVHWAFIGSPRAKKHVYAEMLSK  100 (177)
Q Consensus        77 ~~~~IlIiGpPGSGKSTlA~~LAk  100 (177)
                      ..++|+|+|.||+|||++..++..
T Consensus         4 ~~~ki~vvG~~~~GKTsli~~~~~   27 (170)
T cd04116           4 SLLKVILLGDGGVGKSSLMNRYVT   27 (170)
T ss_pred             eEEEEEEECCCCCCHHHHHHHHHc
Confidence            457899999999999999998864

Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX

>cd04156 ARLTS1 ARLTS1 subfamily

Probab=95.89  E-value=0.0055  Score=46.25  Aligned_cols=22  Identities=18%  Similarity=0.128  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCCchHHHHHHHHH
Q 030464           80 HWAFIGSPRAKKHVYAEMLSKL  101 (177)
Q Consensus        80 ~IlIiGpPGSGKSTlA~~LAk~  101 (177)
                      +|+|+|++|+|||++..++...
T Consensus         1 ~i~i~G~~~~GKTsl~~~~~~~   22 (160)
T cd04156           1 QVLLLGLDSAGKSTLLYKLKHA   22 (160)
T ss_pred             CEEEEcCCCCCHHHHHHHHhcC
Confidence            4899999999999999999764

ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h

>TIGR00416 sms DNA repair protein RadA

Probab=95.89  E-value=0.006  Score=55.82  Aligned_cols=49  Identities=18%  Similarity=0.058  Sum_probs=33.4

Q ss_pred             ccccCcc-CcccCCCeEEEEEcCCCCCchHHHHHHHHHh-----CCCeeeCchhh
Q 030464           65 VTLPDTE-GRERRRGVHWAFIGSPRAKKHVYAEMLSKLL-----EVPRISMSSIV  113 (177)
Q Consensus        65 ~~~~~~~-~~~~~~~~~IlIiGpPGSGKSTlA~~LAk~l-----gl~~Is~~dLl  113 (177)
                      .+.+|.- +....++-.++|.|+||+||||++.+++...     ++.+++..+-.
T Consensus        80 i~~LD~vLgGGi~~GsvilI~G~pGsGKTTL~lq~a~~~a~~g~kvlYvs~EEs~  134 (454)
T TIGR00416        80 FGELDRVLGGGIVPGSLILIGGDPGIGKSTLLLQVACQLAKNQMKVLYVSGEESL  134 (454)
T ss_pred             cHHHHHHhcCCccCCeEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEECcCCH
Confidence            4444443 2234577789999999999999999987654     34567765443

The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).

>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import

Probab=95.89  E-value=0.0072  Score=49.75  Aligned_cols=31  Identities=16%  Similarity=0.218  Sum_probs=25.6

Q ss_pred             CcccCCCeEEEEEcCCCCCchHHHHHHHHHh
Q 030464           72 GRERRRGVHWAFIGSPRAKKHVYAEMLSKLL  102 (177)
Q Consensus        72 ~~~~~~~~~IlIiGpPGSGKSTlA~~LAk~l  102 (177)
                      .....++-++.|+|+.||||||+.+.|+..+
T Consensus        22 s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~   52 (239)
T cd03296          22 SLDIPSGELVALLGPSGSGKTTLLRLIAGLE   52 (239)
T ss_pred             eEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            3344577889999999999999999998654

Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK07994 DNA polymerase III subunits gamma and tau; Validated

Probab=95.89  E-value=0.0067  Score=57.96  Aligned_cols=29  Identities=24%  Similarity=0.266  Sum_probs=25.2

Q ss_pred             CCeEEEEEcCCCCCchHHHHHHHHHhCCC
Q 030464           77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVP  105 (177)
Q Consensus        77 ~~~~IlIiGpPGSGKSTlA~~LAk~lgl~  105 (177)
                      .+.-++|.|+||+||||+|+.+|+.+++.
T Consensus        37 l~hAyLf~Gp~GvGKTTlAr~lAk~L~c~   65 (647)
T PRK07994         37 LHHAYLFSGTRGVGKTTIARLLAKGLNCE   65 (647)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHhhhhc
Confidence            34557999999999999999999998774

>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity

Probab=95.88  E-value=0.0063  Score=47.81  Aligned_cols=35  Identities=20%  Similarity=0.293  Sum_probs=27.6

Q ss_pred             cCccCcccCCCeEEEEEcCCCCCchHHHHHHHHHh
Q 030464           68 PDTEGRERRRGVHWAFIGSPRAKKHVYAEMLSKLL  102 (177)
Q Consensus        68 ~~~~~~~~~~~~~IlIiGpPGSGKSTlA~~LAk~l  102 (177)
                      +........++-.+.|+|+.||||||+.+.|+..+
T Consensus        16 l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~   50 (173)
T cd03230          16 LDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLL   50 (173)
T ss_pred             eeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence            33444445677889999999999999999998753

In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PTZ00035 Rad51 protein; Provisional

Probab=95.88  E-value=0.03  Score=49.41  Aligned_cols=38  Identities=18%  Similarity=0.052  Sum_probs=28.2

Q ss_pred             CCccccCccC-cccCCCeEEEEEcCCCCCchHHHHHHHH
Q 030464           63 RSVTLPDTEG-RERRRGVHWAFIGSPRAKKHVYAEMLSK  100 (177)
Q Consensus        63 ~~~~~~~~~~-~~~~~~~~IlIiGpPGSGKSTlA~~LAk  100 (177)
                      .-.+.++.-. .....+-.+.|.|+||||||++|..++-
T Consensus       102 TG~~~LD~lLgGGi~~G~iteI~G~~GsGKT~l~~~l~~  140 (337)
T PTZ00035        102 TGSTQLDKLLGGGIETGSITELFGEFRTGKTQLCHTLCV  140 (337)
T ss_pred             CCcHHHHHHhCCCCCCCeEEEEECCCCCchhHHHHHHHH
Confidence            3345555542 2445778889999999999999999874

>PRK00149 dnaA chromosomal replication initiation protein; Reviewed

Probab=95.88  E-value=0.0052  Score=55.67  Aligned_cols=35  Identities=9%  Similarity=0.096  Sum_probs=27.4

Q ss_pred             EEEEEcCCCCCchHHHHHHHHHh-----C--CCeeeCchhhh
Q 030464           80 HWAFIGSPRAKKHVYAEMLSKLL-----E--VPRISMSSIVR  114 (177)
Q Consensus        80 ~IlIiGpPGSGKSTlA~~LAk~l-----g--l~~Is~~dLlr  114 (177)
                      .++|.|+||+|||++++.++..+     +  +.+++..+++.
T Consensus       150 ~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~~~~~~~  191 (450)
T PRK00149        150 PLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVTSEKFTN  191 (450)
T ss_pred             eEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHH
Confidence            37899999999999999999875     3  44667666543

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	177
1ak2_A	233	Adenylate Kinase Isoenzyme-2 Length = 233		4e-08
1ake_A	214	Structure Of The Complex Between Adenylate Kinase F		2e-07
3hpr_A	214	Crystal Structure Of V148g Adenylate Kinase From E.		2e-07
1e4v_A	214	Mutant G10v Of Adenylate Kinase From E. Coli, Modif		2e-07
2c9y_A	242	Structure Of Human Adenylate Kinase 2 Length = 242		4e-07
2osb_A	216	Crystal Structure Of A Thermostable Mutant Of Bacil		1e-06
3dl0_A	216	Crystal Structure Of Adenylate Kinase Variant Aklse		1e-06
2qaj_A	217	Crystal Structure Of A Thermostable Mutant Of Bacil		1e-06
2eu8_A	216	Crystal Structure Of A Thermostable Mutant Of Bacil		1e-06
1p3j_A	217	Adenylate Kinase From Bacillus Subtilis Length = 21		1e-06
2p3s_A	217	Crystal Structure Of A Thermostable Mutant Of Bacil		1e-06
2ori_A	216	Crystal Structure Of A Thermostable Mutant Of Bacil		1e-06
2oo7_A	217	Crystal Structure Of A Thermostable Mutant Of Bacil		1e-06
1zin_A	217	Adenylate Kinase With Bound Ap5a Length = 217		2e-06
1e4y_A	214	Mutant P9l Of Adenylate Kinase From E. Coli, Modifi		3e-06
3dkv_A	217	Crystal Structure Of Adenylate Kinase Variant Aklse		4e-06
3fb4_A	216	Crystal Structure Of Adenylate Kinase From Mariniba		5e-06
3tlx_A	243	Crystal Structure Of Pf10_0086, Adenylate Kinase Fr		5e-06
2cdn_A	201	Crystal Structure Of Mycobacterium Tuberculosis Ade		9e-06
3gmt_A	230	Crystal Structure Of Adenylate Kinase From Burkhold		2e-05
1p4s_A	181	Solution Structure Of Mycobacterium Tuberculosis Ad		2e-05
3be4_A	217	Crystal Structure Of Cryptosporidium Parvum Adenyla		3e-05
3aky_A	220	Stability, Activity And Structure Of Adenylate Kina		1e-04
1aky_A	220	High-Resolution Structures Of Adenylate Kinase From		1e-04
2xb4_A	223	Crystal Structures Of Zinc Containing Adenylate Kin		1e-04
3l0p_A	223	Crystal Structures Of Iron Containing Adenylate Kin		1e-04
1zak_A	222	Adenylate Kinase From Maize In Complex With The Inh		2e-04
3cm0_A	186	Crystal Structure Of Adenylate Kinase From Thermus		2e-04
2rgx_A	206	Crystal Structure Of Adenylate Kinase From Aquifex		2e-04
1uky_A	203	Substrate Specificity And Assembly Of Catalytic Cen		2e-04
1s3g_A	217	Crystal Structure Of Adenylate Kinase From Bacillus		5e-04

>pdb|1AK2|A Chain A, Adenylate Kinase Isoenzyme-2 Length = 233

Iteration: 1
 Score = 53.9 bits (128), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 31/102 (30%), Positives = 55/102 (53%), Gaps = 2/102 (1%)
Query: 74  ERRRGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNR 133
           E  +GV    +G P A K   A  L+K   V  ++   ++R  ++  S L K++   ++ 
Sbjct: 12  ESPKGVRAVLLGPPGAGKGTQAPKLAKNFCVCHLATGDMLRAMVASGSELGKKLKATMDA 71
Query: 134 GEVVSEDIIFGLLSKRLEDGYYRGEIGFILDGLPRSRIQATI 175
           G++VS++++  L+ K LE    +   GF+LDG PR+  QA +
Sbjct: 72  GKLVSDEMVLELIEKNLETPPCKN--GFLLDGFPRTVRQAEM 111

>pdb|1AKE|A Chain A, Structure Of The Complex Between Adenylate Kinase From Escherichia Coli And The Inhibitor Ap5a Refined At 1.9 Angstroms Resolution: A Model For A Catalytic Transition State Length = 214

Iteration: 1
 Score = 52.0 bits (123), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 27/91 (29%), Positives = 52/91 (57%), Gaps = 2/91 (2%)
Query: 83  FIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDII 142
            +G+P A K   A+ + +   +P+IS   ++R  +   S L KQ  + ++ G++V+++++
Sbjct: 5   LLGAPGAGKGTQAQFIMEKYGIPQISTGDMLRAAVKSGSELGKQAKDIMDAGKLVTDELV 64
Query: 143 FGLLSKRLEDGYYRGEIGFILDGLPRSRIQA 173
             L+ +R+     R   GF+LDG PR+  QA
Sbjct: 65  IALVKERIAQEDCRN--GFLLDGFPRTIPQA 93

>pdb|3HPR|A Chain A, Crystal Structure Of V148g Adenylate Kinase From E. Coli, In Complex With Ap5a Length = 214

Iteration: 1
 Score = 52.0 bits (123), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 27/91 (29%), Positives = 52/91 (57%), Gaps = 2/91 (2%)
Query: 83  FIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDII 142
            +G+P A K   A+ + +   +P+IS   ++R  +   S L KQ  + ++ G++V+++++
Sbjct: 5   LLGAPGAGKGTQAQFIMEKYGIPQISTGDMLRAAVKSGSELGKQAKDIMDAGKLVTDELV 64
Query: 143 FGLLSKRLEDGYYRGEIGFILDGLPRSRIQA 173
             L+ +R+     R   GF+LDG PR+  QA
Sbjct: 65  IALVKERIAQEDCRN--GFLLDGFPRTIPQA 93

>pdb|1E4V|A Chain A, Mutant G10v Of Adenylate Kinase From E. Coli, Modified In The Gly-Loop Length = 214

Iteration: 1
 Score = 52.0 bits (123), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 27/91 (29%), Positives = 52/91 (57%), Gaps = 2/91 (2%)
Query: 83  FIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDII 142
            +G+P A K   A+ + +   +P+IS   ++R  +   S L KQ  + ++ G++V+++++
Sbjct: 5   LLGAPVAGKGTQAQFIMEKYGIPQISTGDMLRAAVKSGSELGKQAKDIMDAGKLVTDELV 64
Query: 143 FGLLSKRLEDGYYRGEIGFILDGLPRSRIQA 173
             L+ +R+     R   GF+LDG PR+  QA
Sbjct: 65  IALVKERIAQEDCRN--GFLLDGFPRTIPQA 93

>pdb|2C9Y|A Chain A, Structure Of Human Adenylate Kinase 2 Length = 242

Iteration: 1
 Score = 50.8 bits (120), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 29/102 (28%), Positives = 55/102 (53%), Gaps = 2/102 (1%)
Query: 74  ERRRGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNR 133
           E  +G+    +G P A K   A  L++   V  ++   ++R  ++  S L K++   ++ 
Sbjct: 12  EYPKGIRAVLLGPPGAGKGTQAPRLAENFCVCHLATGDMLRAMVASGSELGKKLKATMDA 71
Query: 134 GEVVSEDIIFGLLSKRLEDGYYRGEIGFILDGLPRSRIQATI 175
           G++VS++++  L+ K LE    +   GF+LDG PR+  QA +
Sbjct: 72  GKLVSDEMVVELIEKNLETPLCKN--GFLLDGFPRTVRQAEM 111

>pdb|2OSB|A Chain A, Crystal Structure Of A Thermostable Mutant Of Bacillus Subtilis Adenylate Kinase (q16l/q199r/) Length = 216

Iteration: 1
 Score = 49.3 bits (116), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 26/94 (27%), Positives = 49/94 (52%), Gaps = 2/94 (2%)
Query: 79  VHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVS 138
           ++   +G P A K    E + +   +P IS   + R  +   + L  +  + +++GE+V 
Sbjct: 1   MNLVLMGLPGAGKGTLGERIVEDYGIPHISTGDMFRAAMKEETPLGLEAKSYIDKGELVP 60
Query: 139 EDIIFGLLSKRLEDGYYRGEIGFILDGLPRSRIQ 172
           +++  G++ +RL  G    E GF+LDG PR+  Q
Sbjct: 61  DEVTIGIVKERL--GKDDCERGFLLDGFPRTVAQ 92

>pdb|3DL0|A Chain A, Crystal Structure Of Adenylate Kinase Variant Aklse3 Length = 216

Iteration: 1
 Score = 49.3 bits (116), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 26/94 (27%), Positives = 49/94 (52%), Gaps = 2/94 (2%)
Query: 79  VHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVS 138
           ++   +G P A K    E + +   +P IS   + R  +   + L  +  + +++GE+V 
Sbjct: 1   MNLVLMGLPGAGKGTQGERIVEKYGIPHISTGDMFRAAMKEETPLGLEAKSYIDKGELVP 60
Query: 139 EDIIFGLLSKRLEDGYYRGEIGFILDGLPRSRIQ 172
           +++  G++ +RL  G    E GF+LDG PR+  Q
Sbjct: 61  DEVTIGIVKERL--GKDDCERGFLLDGFPRTVAQ 92

>pdb|2QAJ|A Chain A, Crystal Structure Of A Thermostable Mutant Of Bacillus Subtilis Adenylate Kinase (Q199rG213E) Length = 217

Iteration: 1
 Score = 49.3 bits (116), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 26/94 (27%), Positives = 49/94 (52%), Gaps = 2/94 (2%)
Query: 79  VHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVS 138
           ++   +G P A K    E + +   +P IS   + R  +   + L  +  + +++GE+V 
Sbjct: 1   MNLVLMGLPGAGKGTQGERIVEDYGIPHISTGDMFRAAMKEETPLGLEAKSYIDKGELVP 60
Query: 139 EDIIFGLLSKRLEDGYYRGEIGFILDGLPRSRIQ 172
           +++  G++ +RL  G    E GF+LDG PR+  Q
Sbjct: 61  DEVTIGIVKERL--GKDDCERGFLLDGFPRTVAQ 92

>pdb|2EU8|A Chain A, Crystal Structure Of A Thermostable Mutant Of Bacillus Subtilis Adenylate Kinase (Q199r) Length = 216

Iteration: 1
 Score = 49.3 bits (116), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 26/94 (27%), Positives = 49/94 (52%), Gaps = 2/94 (2%)
Query: 79  VHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVS 138
           ++   +G P A K    E + +   +P IS   + R  +   + L  +  + +++GE+V 
Sbjct: 1   MNLVLMGLPGAGKGTQGERIVEDYGIPHISTGDMFRAAMKEETPLGLEAKSYIDKGELVP 60
Query: 139 EDIIFGLLSKRLEDGYYRGEIGFILDGLPRSRIQ 172
           +++  G++ +RL  G    E GF+LDG PR+  Q
Sbjct: 61  DEVTIGIVKERL--GKDDCERGFLLDGFPRTVAQ 92

>pdb|1P3J|A Chain A, Adenylate Kinase From Bacillus Subtilis Length = 217

Iteration: 1
 Score = 49.3 bits (116), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 26/94 (27%), Positives = 49/94 (52%), Gaps = 2/94 (2%)
Query: 79  VHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVS 138
           ++   +G P A K    E + +   +P IS   + R  +   + L  +  + +++GE+V 
Sbjct: 1   MNLVLMGLPGAGKGTQGERIVEDYGIPHISTGDMFRAAMKEETPLGLEAKSYIDKGELVP 60
Query: 139 EDIIFGLLSKRLEDGYYRGEIGFILDGLPRSRIQ 172
           +++  G++ +RL  G    E GF+LDG PR+  Q
Sbjct: 61  DEVTIGIVKERL--GKDDCERGFLLDGFPRTVAQ 92

>pdb|2P3S|A Chain A, Crystal Structure Of A Thermostable Mutant Of Bacillus Subtilis Adenylate Kinase (G214rQ199R) Length = 217

Iteration: 1
 Score = 49.3 bits (116), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 26/94 (27%), Positives = 49/94 (52%), Gaps = 2/94 (2%)
Query: 79  VHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVS 138
           ++   +G P A K    E + +   +P IS   + R  +   + L  +  + +++GE+V 
Sbjct: 1   MNLVLMGLPGAGKGTQGERIVEDYGIPHISTGDMFRAAMKEETPLGLEAKSYIDKGELVP 60
Query: 139 EDIIFGLLSKRLEDGYYRGEIGFILDGLPRSRIQ 172
           +++  G++ +RL  G    E GF+LDG PR+  Q
Sbjct: 61  DEVTIGIVKERL--GKDDCERGFLLDGFPRTVAQ 92

>pdb|2ORI|A Chain A, Crystal Structure Of A Thermostable Mutant Of Bacillus Subtilis Adenylate Kinase (A193vQ199R) Length = 216

Iteration: 1
 Score = 49.3 bits (116), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 26/94 (27%), Positives = 49/94 (52%), Gaps = 2/94 (2%)
Query: 79  VHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVS 138
           ++   +G P A K    E + +   +P IS   + R  +   + L  +  + +++GE+V 
Sbjct: 1   MNLVLMGLPGAGKGTQGERIVEDYGIPHISTGDMFRAAMKEETPLGLEAKSYIDKGELVP 60
Query: 139 EDIIFGLLSKRLEDGYYRGEIGFILDGLPRSRIQ 172
           +++  G++ +RL  G    E GF+LDG PR+  Q
Sbjct: 61  DEVTIGIVKERL--GKDDCERGFLLDGFPRTVAQ 92

>pdb|2OO7|A Chain A, Crystal Structure Of A Thermostable Mutant Of Bacillus Subtilis Adenylate Kinase (T179iQ199R) Length = 217

Iteration: 1
 Score = 48.9 bits (115), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 26/94 (27%), Positives = 49/94 (52%), Gaps = 2/94 (2%)
Query: 79  VHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVS 138
           ++   +G P A K    E + +   +P IS   + R  +   + L  +  + +++GE+V 
Sbjct: 1   MNLVLMGLPGAGKGTQGERIVEDYGIPHISTGDMFRAAMKEETPLGLEAKSYIDKGELVP 60
Query: 139 EDIIFGLLSKRLEDGYYRGEIGFILDGLPRSRIQ 172
           +++  G++ +RL  G    E GF+LDG PR+  Q
Sbjct: 61  DEVTIGIVKERL--GKDDCERGFLLDGFPRTVAQ 92

>pdb|1ZIN|A Chain A, Adenylate Kinase With Bound Ap5a Length = 217

Iteration: 1
 Score = 48.5 bits (114), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 27/95 (28%), Positives = 48/95 (50%), Gaps = 2/95 (2%)
Query: 79  VHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVS 138
           ++   +G P A K   AE +     +P IS   + R  +   + L  Q    ++RG++V 
Sbjct: 1   MNLVLMGLPGAGKGTQAEKIVAAYGIPHISTGDMFRAAMKEGTPLGLQAKQYMDRGDLVP 60
Query: 139 EDIIFGLLSKRLEDGYYRGEIGFILDGLPRSRIQA 173
           +++  G++ +RL     +   GF+LDG PR+  QA
Sbjct: 61  DEVTIGIVRERLSKDDCQN--GFLLDGFPRTVAQA 93

>pdb|1E4Y|A Chain A, Mutant P9l Of Adenylate Kinase From E. Coli, Modified In The Gly-Loop Length = 214

Iteration: 1
 Score = 47.8 bits (112), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 26/91 (28%), Positives = 51/91 (56%), Gaps = 2/91 (2%)
Query: 83  FIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDII 142
            +G+  A K   A+ + +   +P+IS   ++R  +   S L KQ  + ++ G++V+++++
Sbjct: 5   LLGALVAGKGTQAQFIMEKYGIPQISTGDMLRAAVKSGSELGKQAKDIMDAGKLVTDELV 64
Query: 143 FGLLSKRLEDGYYRGEIGFILDGLPRSRIQA 173
             L+ +R+     R   GF+LDG PR+  QA
Sbjct: 65  IALVKERIAQEDCRN--GFLLDGFPRTIPQA 93

>pdb|3DKV|A Chain A, Crystal Structure Of Adenylate Kinase Variant Aklse1 Length = 217

Iteration: 1
 Score = 47.8 bits (112), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 26/94 (27%), Positives = 49/94 (52%), Gaps = 2/94 (2%)
Query: 79  VHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVS 138
           ++   +G P A K   AE + +   +P IS   + R  +   + L  +  + +++GE+V 
Sbjct: 1   MNIVLMGLPGAGKGTQAERIVEKYGIPHISTGDMFRAAMKEETPLGLEAKSYIDKGELVP 60
Query: 139 EDIIFGLLSKRLEDGYYRGEIGFILDGLPRSRIQ 172
           +++  G++ +RL       E GF+LDG PR+  Q
Sbjct: 61  DEVTIGIVRERLSKSDC--ERGFLLDGFPRTVAQ 92

>pdb|3FB4|A Chain A, Crystal Structure Of Adenylate Kinase From Marinibacillus Marinus Length = 216

Iteration: 1
 Score = 47.4 bits (111), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 27/96 (28%), Positives = 52/96 (54%), Gaps = 4/96 (4%)
Query: 79  VHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVS 138
           ++   +G P A K   AE + +  E+P IS   + R  +   + L  +  + +++G +V 
Sbjct: 1   MNIVLMGLPGAGKGTQAEQIIEKYEIPHISTGDMFRAAIKNGTELGLKAKSFMDQGNLVP 60
Query: 139 EDIIFGLLSKRL-EDGYYRGEIGFILDGLPRSRIQA 173
           +++  G++ +RL +D   +   GF+LDG PR+  QA
Sbjct: 61  DEVTIGIVHERLSKDDCQK---GFLLDGFPRTVAQA 93

>pdb|3TLX|A Chain A, Crystal Structure Of Pf10_0086, Adenylate Kinase From Plasmodium Falciparum Length = 243

Iteration: 1
 Score = 47.0 bits (110), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 26/93 (27%), Positives = 50/93 (53%), Gaps = 2/93 (2%)
Query: 81  WAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSED 140
           + F+G+P + K   +  L K      +S   ++R+    ++ L  +I N +N G++V + 
Sbjct: 32  YIFLGAPGSGKGTQSLNLKKSHCYCHLSTGDLLREAAEKKTELGLKIKNIINEGKLVDDQ 91
Query: 141 IIFGLLSKRLEDGYYRGEIGFILDGLPRSRIQA 173
           ++  L+ ++L+    +   GFILDG PR+  QA
Sbjct: 92  MVLSLVDEKLKTPQCKK--GFILDGYPRNVKQA 122

>pdb|2CDN|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Adenylate Kinase Complexed With Two Molecules Of Adp And Mg Length = 201

Iteration: 1
 Score = 46.2 bits (108), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 32/99 (32%), Positives = 50/99 (50%), Gaps = 4/99 (4%)
Query: 77  RGVHW--AFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRG 134
           RG H     +G P A K   A  L++ L +P+IS   + R+++   + L  +    ++ G
Sbjct: 17  RGSHMRVLLLGPPGAGKGTQAVKLAEKLGIPQISTGELFRRNIEEGTKLGVEAKRYLDAG 76
Query: 135 EVVSEDIIFGLLSKRLEDGYYRGEIGFILDGLPRSRIQA 173
           ++V  D+   L+  RL +       GFILDG PRS  QA
Sbjct: 77  DLVPSDLTNELVDDRLNN--PDAANGFILDGYPRSVEQA 113

>pdb|3GMT|A Chain A, Crystal Structure Of Adenylate Kinase From Burkholderia Pseu Length = 230

Iteration: 1
 Score = 45.1 bits (105), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 24/91 (26%), Positives = 46/91 (50%), Gaps = 2/91 (2%)
Query: 83  FIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDII 142
            +G+P A K   A  + +   +P+IS    +R  +   + L  +     + G++V + +I
Sbjct: 13  LLGAPGAGKGTQANFIKEKFGIPQISTGDXLRAAVKAGTPLGVEAKTYXDEGKLVPDSLI 72
Query: 143 FGLLSKRLEDGYYRGEIGFILDGLPRSRIQA 173
            GL+ +RL++       G++ DG PR+  QA
Sbjct: 73  IGLVKERLKEADCAN--GYLFDGFPRTIAQA 101

>pdb|1P4S|A Chain A, Solution Structure Of Mycobacterium Tuberculosis Adenylate Kinase Length = 181

Iteration: 1
 Score = 45.1 bits (105), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 29/91 (31%), Positives = 47/91 (51%), Gaps = 2/91 (2%)
Query: 83  FIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDII 142
            +G P A K   A  L++ L +P+IS   + R+++   + L  +    ++ G++V  D+ 
Sbjct: 5   LLGPPGAGKGTQAVKLAEKLGIPQISTGELFRRNIEEGTKLGVEAKRYLDAGDLVPSDLT 64
Query: 143 FGLLSKRLEDGYYRGEIGFILDGLPRSRIQA 173
             L+  RL +       GFILDG PRS  QA
Sbjct: 65  NELVDDRLNNPDAAN--GFILDGYPRSVEQA 93

>pdb|3BE4|A Chain A, Crystal Structure Of Cryptosporidium Parvum Adenylate Kinase Cgd5_3360 Length = 217

Iteration: 1
 Score = 44.7 bits (104), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 23/91 (25%), Positives = 46/91 (50%), Gaps = 2/91 (2%)
Query: 83  FIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDII 142
            IG+P + K    E + K   +  +S   ++R+ +   + +  +  + +  G  V ++I+
Sbjct: 10  LIGAPGSGKGTQCEFIKKEYGLAHLSTGDMLREAIKNGTKIGLEAKSIIESGNFVGDEIV 69
Query: 143 FGLLSKRLEDGYYRGEIGFILDGLPRSRIQA 173
            GL+ ++ + G      GF+LDG PR+  QA
Sbjct: 70  LGLVKEKFDLGVCVN--GFVLDGFPRTIPQA 98

>pdb|3AKY|A Chain A, Stability, Activity And Structure Of Adenylate Kinase Mutants Length = 220

Iteration: 1
 Score = 42.7 bits (99), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 25/95 (26%), Positives = 46/95 (48%), Gaps = 1/95 (1%)
Query: 79  VHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVS 138
           +    IG P A K   A  L +      ++   ++R  ++  + L  +    +++G +VS
Sbjct: 5   IRMVLIGPPGAGKGTQAPNLQERFHAAHLATGDMLRSQIAKGTQLGLEAKKIMDQGGLVS 64
Query: 139 EDIIFGLLSKRLEDGYYRGEIGFILDGLPRSRIQA 173
           +DI+  ++   L +     + GFILDG PR+  QA
Sbjct: 65  DDIMVNMIKDELTNNPA-CKNGFILDGFPRTIPQA 98

>pdb|1AKY|A Chain A, High-Resolution Structures Of Adenylate Kinase From Yeast Ligated With Inhibitor Ap5a, Showing The Pathway Of Phosphoryl Transfer Length = 220

Iteration: 1
 Score = 42.7 bits (99), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 25/95 (26%), Positives = 46/95 (48%), Gaps = 1/95 (1%)
Query: 79  VHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVS 138
           +    IG P A K   A  L +      ++   ++R  ++  + L  +    +++G +VS
Sbjct: 5   IRMVLIGPPGAGKGTQAPNLQERFHAAHLATGDMLRSQIAKGTQLGLEAKKIMDQGGLVS 64
Query: 139 EDIIFGLLSKRLEDGYYRGEIGFILDGLPRSRIQA 173
           +DI+  ++   L +     + GFILDG PR+  QA
Sbjct: 65  DDIMVNMIKDELTNNPA-CKNGFILDGFPRTIPQA 98

>pdb|2XB4|A Chain A, Crystal Structures Of Zinc Containing Adenylate Kinase From Desulfovibrio Gigas Length = 223

Iteration: 1
 Score = 42.4 bits (98), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 23/89 (25%), Positives = 45/89 (50%), Gaps = 3/89 (3%)
Query: 85  GSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFG 144
           G   + K     ++     +  I    I R+ +   + L K+    ++RG++V +DI   
Sbjct: 7   GPNGSGKGTQGNLVKDKYSLAHIESGGIFREHIGGGTELGKKAKEFIDRGDLVPDDITIP 66
Query: 145 LLSKRLEDGYYRGEIGFILDGLPRSRIQA 173
           ++ + LE    +G+ G++LDG PR+ +QA
Sbjct: 67  MVLETLES---KGKDGWLLDGFPRNTVQA 92

>pdb|3L0P|A Chain A, Crystal Structures Of Iron Containing Adenylate Kinase From Desulfovibrio Gigas Length = 223

Iteration: 1
 Score = 42.4 bits (98), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 23/89 (25%), Positives = 45/89 (50%), Gaps = 3/89 (3%)
Query: 85  GSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFG 144
           G   + K     ++     +  I    I R+ +   + L K+    ++RG++V +DI   
Sbjct: 7   GPNGSGKGTQGNLVKDKYSLAHIESGGIFREHIGGGTELGKKAKEFIDRGDLVPDDITIP 66
Query: 145 LLSKRLEDGYYRGEIGFILDGLPRSRIQA 173
           ++ + LE    +G+ G++LDG PR+ +QA
Sbjct: 67  MVLETLES---KGKDGWLLDGFPRNTVQA 92

>pdb|1ZAK|A Chain A, Adenylate Kinase From Maize In Complex With The Inhibitor P1,P5-Bis(Adenosine-5'-)pentaphosphate (Ap5a) Length = 222

Iteration: 1
 Score = 42.0 bits (97), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 24/89 (26%), Positives = 49/89 (55%), Gaps = 1/89 (1%)
Query: 85  GSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFG 144
           G+P + K    E++    ++  IS   ++R +++  S   K+    + +G++V ++I+  
Sbjct: 12  GAPASGKGTQCELIKTKYQLAHISAGDLLRAEIAAGSENGKRAKEFMEKGQLVPDEIVVN 71
Query: 145 LLSKRLEDGYYRGEIGFILDGLPRSRIQA 173
           ++ +RL     + E G++LDG PRS  QA
Sbjct: 72  MVKERLRQPDAQ-ENGWLLDGYPRSYSQA 99

>pdb|3CM0|A Chain A, Crystal Structure Of Adenylate Kinase From Thermus Thermophilus Hb8 Length = 186

Iteration: 1
 Score = 42.0 bits (97), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 27/96 (28%), Positives = 48/96 (50%), Gaps = 7/96 (7%)
Query: 78  GVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVV 137
           G    F+G P A K   A  L++ L   ++S   I+R  ++  + L +++   + RG++V
Sbjct: 4   GQAVIFLGPPGAGKGTQASRLAQELGFKKLSTGDILRDHVARGTPLGERVRPIMERGDLV 63
Query: 138 SEDIIFGLLSKRLEDGYYRGEIGFILDGLPRSRIQA 173
            +D+I  L+ + L +         I DG PR+  QA
Sbjct: 64  PDDLILELIREELAE-------RVIFDGFPRTLAQA 92

>pdb|2RGX|A Chain A, Crystal Structure Of Adenylate Kinase From Aquifex Aeolicus In Complex With Ap5a Length = 206

Iteration: 1
 Score = 42.0 bits (97), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 28/93 (30%), Positives = 44/93 (47%), Gaps = 5/93 (5%)
Query: 81  WAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSED 140
             F+G P A K   A+ L+K      IS   I+R+ +   + L K+    + RGE+V +D
Sbjct: 3   LVFLGPPGAGKGTQAKRLAKEKGFVHISTGDILREAVQKGTPLGKKAKEYMERGELVPDD 62
Query: 141 IIFGLLSKRLEDGYYRGEIGFILDGLPRSRIQA 173
           +I  L+ +      +      I DG PR+  QA
Sbjct: 63  LIIALIEE-----VFPKHGNVIFDGFPRTVKQA 90

>pdb|1UKY|A Chain A, Substrate Specificity And Assembly Of Catalytic Center Derived From Two Structures Of Ligated Uridylate Kinase Length = 203

Iteration: 1
 Score = 41.6 bits (96), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 25/91 (27%), Positives = 41/91 (45%), Gaps = 1/91 (1%)
Query: 84  IGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQ-IANAVNRGEVVSEDII 142
           +G P A K    E L K      +S   ++R +     S + + I N +  G++V ++I 
Sbjct: 21  LGGPGAGKGTQCEKLVKDYSFVHLSAGDLLRAEQGRAGSQYGELIKNCIKEGQIVPQEIT 80
Query: 143 FGLLSKRLEDGYYRGEIGFILDGLPRSRIQA 173
             LL   + D     +  F++DG PR   QA
Sbjct: 81  LALLRNAISDNVKANKHKFLIDGFPRKMDQA 111

>pdb|1S3G|A Chain A, Crystal Structure Of Adenylate Kinase From Bacillus Globisporus Length = 217

Iteration: 1
 Score = 40.4 bits (93), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 24/95 (25%), Positives = 48/95 (50%), Gaps = 2/95 (2%)
Query: 79  VHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVS 138
           ++   +G P A K   A+ + +    P IS   + R  +   + L  +  + +++G +V 
Sbjct: 1   MNIVLMGLPGAGKGTQADRIVEKYGTPHISTGDMFRAAIQEGTELGVKAKSFMDQGALVP 60
Query: 139 EDIIFGLLSKRLEDGYYRGEIGFILDGLPRSRIQA 173
           +++  G++ +RL       + GF+LDG PR+  QA
Sbjct: 61  DEVTIGIVRERLSKSDC--DNGFLLDGFPRTVPQA 93

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	177
1zd8_A	227	GTP:AMP phosphotransferase mitochondrial; ATP:AMP	7e-12
3cm0_A	186	Adenylate kinase; ATP-binding, cytoplasm, nucleoti	1e-11
2xb4_A	223	Adenylate kinase; ATP-binding, nucleotide-binding,	2e-11
2rgx_A	206	Adenylate kinase; transferase(phosphotransferase),	2e-11
3be4_A	217	Adenylate kinase; malaria, cryptosporidium parvum	2e-11
3gmt_A	230	Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucle	3e-11
1e4v_A	214	Adenylate kinase; transferase(phosphotransferase);	3e-11
3fb4_A	216	Adenylate kinase; psychrophIle, phosphotransferase	3e-11
3dl0_A	216	Adenylate kinase; phosphotransferase, zinc coordin	3e-11
2bbw_A	246	Adenylate kinase 4, AK4; nucleotide kinase, nucleo	6e-11
3tlx_A	243	Adenylate kinase 2; structural genomics, structura	8e-11
2cdn_A	201	Adenylate kinase; phosphoryl transfer, associative	8e-11
1ak2_A	233	Adenylate kinase isoenzyme-2; nucleoside monophosp	2e-10
1zak_A	222	Adenylate kinase; ATP:AMP-phosphotransferase, tran	2e-10
1ukz_A	203	Uridylate kinase; transferase; HET: ADP AMP; 1.90A	5e-10
1aky_A	220	Adenylate kinase; ATP:AMP phosphotransferase, myok	6e-10
1qf9_A	194	UMP/CMP kinase, protein (uridylmonophosphate/cytid	2e-09
2bwj_A	199	Adenylate kinase 5; phosphoryl transfer reaction,	1e-08
1tev_A	196	UMP-CMP kinase; ploop, NMP binding region, LID reg	3e-08
2c95_A	196	Adenylate kinase 1; transferase, AP4A, nucleotide	5e-08
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-04

>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A* Length = 227

 Score = 60.7 bits (148), Expect = 7e-12
 Identities = 17/91 (18%), Positives = 46/91 (50%), Gaps = 3/91 (3%)

Query: 83  FIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDII 142
            +G+P + K   +  ++   E+  +S   ++R ++   + +       +++G+++ +D++
Sbjct: 12  IMGAPGSGKGTVSSRITTHFELKHLSSGDLLRDNMLRGTEIGVLAKAFIDQGKLIPDDVM 71

Query: 143 FGLLSKRLEDGYYRGEIGFILDGLPRSRIQA 173
             L    L++     +  ++LDG PR+  QA
Sbjct: 72  TRLALHELKN---LTQYSWLLDGFPRTLPQA 99

>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus} Length = 186

 Score = 59.1 bits (144), Expect = 1e-11
 Identities = 26/91 (28%), Positives = 47/91 (51%), Gaps = 7/91 (7%)

Query: 83  FIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDII 142
           F+G P A K   A  L++ L   ++S   I+R  ++  + L +++   + RG++V +D+I
Sbjct: 9   FLGPPGAGKGTQASRLAQELGFKKLSTGDILRDHVARGTPLGERVRPIMERGDLVPDDLI 68

Query: 143 FGLLSKRLEDGYYRGEIGFILDGLPRSRIQA 173
             L+ + L +         I DG PR+  QA
Sbjct: 69  LELIREELAE-------RVIFDGFPRTLAQA 92

>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A* Length = 223

 Score = 59.2 bits (144), Expect = 2e-11
 Identities = 22/91 (24%), Positives = 42/91 (46%), Gaps = 3/91 (3%)

Query: 83  FIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDII 142
             G   + K     ++     +  I    I R+ +   + L K+    ++RG++V +DI 
Sbjct: 5   IFGPNGSGKGTQGNLVKDKYSLAHIESGGIFREHIGGGTELGKKAKEFIDRGDLVPDDIT 64

Query: 143 FGLLSKRLEDGYYRGEIGFILDGLPRSRIQA 173
             ++ + LE        G++LDG PR+ +QA
Sbjct: 65  IPMVLETLESKGKD---GWLLDGFPRNTVQA 92

>2rgx_A Adenylate kinase; transferase(phosphotransferase), ATP-binding, nucleo binding, transferase; HET: AP5; 1.90A {Aquifex aeolicus} PDB: 2rh5_A Length = 206

 Score = 59.1 bits (144), Expect = 2e-11
 Identities = 28/91 (30%), Positives = 43/91 (47%), Gaps = 5/91 (5%)

Query: 83  FIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDII 142
           F+G P A K   A+ L+K      IS   I+R+ +   + L K+    + RGE+V +D+I
Sbjct: 5   FLGPPGAGKGTQAKRLAKEKGFVHISTGDILREAVQKGTPLGKKAKEYMERGELVPDDLI 64

Query: 143 FGLLSKRLEDGYYRGEIGFILDGLPRSRIQA 173
             L+ +             I DG PR+  QA
Sbjct: 65  IALIEEVFPK-----HGNVIFDGFPRTVKQA 90

>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II} Length = 217

 Score = 59.1 bits (144), Expect = 2e-11
 Identities = 23/91 (25%), Positives = 46/91 (50%), Gaps = 2/91 (2%)

Query: 83  FIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDII 142
            IG+P + K    E + K   +  +S   ++R+ +   + +  +  + +  G  V ++I+
Sbjct: 10  LIGAPGSGKGTQCEFIKKEYGLAHLSTGDMLREAIKNGTKIGLEAKSIIESGNFVGDEIV 69

Query: 143 FGLLSKRLEDGYYRGEIGFILDGLPRSRIQA 173
            GL+ ++ + G      GF+LDG PR+  QA
Sbjct: 70  LGLVKEKFDLGVCVN--GFVLDGFPRTIPQA 98

>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B} Length = 230

 Score = 59.2 bits (144), Expect = 3e-11
 Identities = 24/99 (24%), Positives = 49/99 (49%), Gaps = 2/99 (2%)

Query: 75  RRRGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRG 134
               +    +G+P A K   A  + +   +P+IS   ++R  +   + L  +    ++ G
Sbjct: 5   HHHHMRLILLGAPGAGKGTQANFIKEKFGIPQISTGDMLRAAVKAGTPLGVEAKTYMDEG 64

Query: 135 EVVSEDIIFGLLSKRLEDGYYRGEIGFILDGLPRSRIQA 173
           ++V + +I GL+ +RL++       G++ DG PR+  QA
Sbjct: 65  KLVPDSLIIGLVKERLKEADCAN--GYLFDGFPRTIAQA 101

>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A* Length = 214

 Score = 58.7 bits (143), Expect = 3e-11
 Identities = 27/91 (29%), Positives = 52/91 (57%), Gaps = 2/91 (2%)

Query: 83  FIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDII 142
            +G+P A K   A+ + +   +P+IS   ++R  +   S L KQ  + ++ G++V+++++
Sbjct: 5   LLGAPVAGKGTQAQFIMEKYGIPQISTGDMLRAAVKSGSELGKQAKDIMDAGKLVTDELV 64

Query: 143 FGLLSKRLEDGYYRGEIGFILDGLPRSRIQA 173
             L+ +R+     R   GF+LDG PR+  QA
Sbjct: 65  IALVKERIAQEDCRN--GFLLDGFPRTIPQA 93

>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus} Length = 216

 Score = 58.3 bits (142), Expect = 3e-11
 Identities = 26/91 (28%), Positives = 48/91 (52%), Gaps = 2/91 (2%)

Query: 83  FIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDII 142
            +G P A K   AE + +  E+P IS   + R  +   + L  +  + +++G +V +++ 
Sbjct: 5   LMGLPGAGKGTQAEQIIEKYEIPHISTGDMFRAAIKNGTELGLKAKSFMDQGNLVPDEVT 64

Query: 143 FGLLSKRLEDGYYRGEIGFILDGLPRSRIQA 173
            G++ +RL     +   GF+LDG PR+  QA
Sbjct: 65  IGIVHERLSKDDCQK--GFLLDGFPRTVAQA 93

>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, cytoplasm, metal-binding, nucleotide biosynthesis, nucleotide-binding; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A* Length = 216

 Score = 58.3 bits (142), Expect = 3e-11
 Identities = 25/91 (27%), Positives = 46/91 (50%), Gaps = 2/91 (2%)

Query: 83  FIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDII 142
            +G P A K    E + +   +P IS   + R  +   + L  +  + +++GE+V +++ 
Sbjct: 5   LMGLPGAGKGTQGERIVEKYGIPHISTGDMFRAAMKEETPLGLEAKSYIDKGELVPDEVT 64

Query: 143 FGLLSKRLEDGYYRGEIGFILDGLPRSRIQA 173
            G++ +RL         GF+LDG PR+  QA
Sbjct: 65  IGIVKERLGKDDCER--GFLLDGFPRTVAQA 93

>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A Length = 246

 Score = 58.0 bits (141), Expect = 6e-11
 Identities = 18/91 (19%), Positives = 43/91 (47%), Gaps = 3/91 (3%)

Query: 83  FIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDII 142
            +G P + K    + +++   +  +S    +R+++   + + +     + +  +V + +I
Sbjct: 32  ILGPPGSGKGTVCQRIAQNFGLQHLSSGHFLRENIKASTEVGEMAKQYIEKSLLVPDHVI 91

Query: 143 FGLLSKRLEDGYYRGEIGFILDGLPRSRIQA 173
             L+   LE+   R    ++LDG PR+  QA
Sbjct: 92  TRLMMSELEN---RRGQHWLLDGFPRTLGQA 119

>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum} Length = 243

 Score = 58.0 bits (141), Expect = 8e-11
 Identities = 26/91 (28%), Positives = 49/91 (53%), Gaps = 2/91 (2%)

Query: 83  FIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDII 142
           F+G+P + K   +  L K      +S   ++R+    ++ L  +I N +N G++V + ++
Sbjct: 34  FLGAPGSGKGTQSLNLKKSHCYCHLSTGDLLREAAEKKTELGLKIKNIINEGKLVDDQMV 93

Query: 143 FGLLSKRLEDGYYRGEIGFILDGLPRSRIQA 173
             L+ ++L+    +   GFILDG PR+  QA
Sbjct: 94  LSLVDEKLKTPQCKK--GFILDGYPRNVKQA 122

>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A Length = 201

 Score = 57.2 bits (139), Expect = 8e-11
 Identities = 29/91 (31%), Positives = 47/91 (51%), Gaps = 2/91 (2%)

Query: 83  FIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDII 142
            +G P A K   A  L++ L +P+IS   + R+++   + L  +    ++ G++V  D+ 
Sbjct: 25  LLGPPGAGKGTQAVKLAEKLGIPQISTGELFRRNIEEGTKLGVEAKRYLDAGDLVPSDLT 84

Query: 143 FGLLSKRLEDGYYRGEIGFILDGLPRSRIQA 173
             L+  RL +       GFILDG PRS  QA
Sbjct: 85  NELVDDRLNNPDAAN--GFILDGYPRSVEQA 113

>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A* Length = 233

 Score = 56.4 bits (137), Expect = 2e-10
 Identities = 28/91 (30%), Positives = 50/91 (54%), Gaps = 2/91 (2%)

Query: 83  FIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDII 142
            +G P A K   A  L+K   V  ++   ++R  ++  S L K++   ++ G++VS++++
Sbjct: 21  LLGPPGAGKGTQAPKLAKNFCVCHLATGDMLRAMVASGSELGKKLKATMDAGKLVSDEMV 80

Query: 143 FGLLSKRLEDGYYRGEIGFILDGLPRSRIQA 173
             L+ K LE    +   GF+LDG PR+  QA
Sbjct: 81  LELIEKNLETPPCKN--GFLLDGFPRTVRQA 109

>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1 Length = 222

 Score = 56.4 bits (137), Expect = 2e-10
 Identities = 24/93 (25%), Positives = 48/93 (51%), Gaps = 5/93 (5%)

Query: 83  FIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDII 142
             G+P + K    E++    ++  IS   ++R +++  S   K+    + +G++V ++I+
Sbjct: 10  ISGAPASGKGTQCELIKTKYQLAHISAGDLLRAEIAAGSENGKRAKEFMEKGQLVPDEIV 69

Query: 143 FGLLSKRLE--DGYYRGEIGFILDGLPRSRIQA 173
             ++ +RL   D       G++LDG PRS  QA
Sbjct: 70  VNMVKERLRQPDAQEN---GWLLDGYPRSYSQA 99

>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A* Length = 203

 Score = 55.3 bits (134), Expect = 5e-10
 Identities = 25/92 (27%), Positives = 40/92 (43%), Gaps = 1/92 (1%)

Query: 83  FIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLS-PRSSLHKQIANAVNRGEVVSEDI 141
            +G P A K    E L K      +S   ++R +     S   + I N +  G++V ++I
Sbjct: 20  VLGGPGAGKGTQCEKLVKDYSFVHLSAGDLLRAEQGRAGSQYGELIKNCIKEGQIVPQEI 79

Query: 142 IFGLLSKRLEDGYYRGEIGFILDGLPRSRIQA 173
              LL   + D     +  F++DG PR   QA
Sbjct: 80  TLALLRNAISDNVKANKHKFLIDGFPRKMDQA 111

>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A* Length = 220

 Score = 55.2 bits (134), Expect = 6e-10
 Identities = 25/91 (27%), Positives = 44/91 (48%), Gaps = 1/91 (1%)

Query: 83  FIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDII 142
            IG P A K   A  L +      ++   ++R  ++  + L  +    +++G +VS+DI+
Sbjct: 9   LIGPPGAGKGTQAPNLQERFHAAHLATGDMLRSQIAKGTQLGLEAKKIMDQGGLVSDDIM 68

Query: 143 FGLLSKRLEDGYYRGEIGFILDGLPRSRIQA 173
             ++   L +       GFILDG PR+  QA
Sbjct: 69  VNMIKDELTNNPACKN-GFILDGFPRTIPQA 98

>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A* Length = 194

 Score = 53.3 bits (129), Expect = 2e-09
 Identities = 19/91 (20%), Positives = 37/91 (40%), Gaps = 3/91 (3%)

Query: 83  FIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDII 142
            +G P + K      + +      +S   ++RQ+    S   + IA  +  GE+V   + 
Sbjct: 11  VLGGPGSGKGTQCANIVRDFGWVHLSAGDLLRQEQQSGSKDGEMIATMIKNGEIVPSIVT 70

Query: 143 FGLLSKRLEDGYYRGEIGFILDGLPRSRIQA 173
             LL   ++    +    F++DG PR+    
Sbjct: 71  VKLLKNAIDANQGK---NFLVDGFPRNEENN 98

>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens} Length = 199

 Score = 51.4 bits (124), Expect = 1e-08
 Identities = 21/79 (26%), Positives = 37/79 (46%), Gaps = 1/79 (1%)

Query: 95  AEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGLLSKRLEDGY 154
            E L +      +S   ++R++L+  S   K I + + RG++V   I+  LL + +    
Sbjct: 29  CEKLVEKYGFTHLSTGELLREELASESERSKLIRDIMERGDLVPSGIVLELLKEAMVASL 88

Query: 155 YRGEIGFILDGLPRSRIQA 173
                GF++DG PR   Q 
Sbjct: 89  GDTR-GFLIDGYPREVKQG 106

>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1 Length = 196

 Score = 49.8 bits (120), Expect = 3e-08
 Identities = 19/94 (20%), Positives = 39/94 (41%), Gaps = 3/94 (3%)

Query: 83  FIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDL-SPRSSLHKQIANAVNRGEVVSEDI 141
            +G P A K      + +      +S   ++R +  +P S   + I   +  G++V  +I
Sbjct: 8   VLGGPGAGKGTQCARIVEKYGYTHLSAGELLRDERKNPDSQYGELIEKYIKEGKIVPVEI 67

Query: 142 IFGLLSKRLEDGYYRGEI--GFILDGLPRSRIQA 173
              LL + ++           F++DG PR++   
Sbjct: 68  TISLLKREMDQTMAANAQKNKFLIDGFPRNQDNL 101

>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A Length = 196

 Score = 49.4 bits (119), Expect = 5e-08
 Identities = 19/91 (20%), Positives = 42/91 (46%), Gaps = 1/91 (1%)

Query: 83  FIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDII 142
            +G P + K    E + +      +S   ++R ++S  S+  K+++  + +G++V  + +
Sbjct: 14  VVGGPGSGKGTQCEKIVQKYGYTHLSTGDLLRSEVSSGSARGKKLSEIMEKGQLVPLETV 73

Query: 143 FGLLSKRLEDGYYRGEIGFILDGLPRSRIQA 173
             +L   +         GF++DG PR   Q 
Sbjct: 74  LDMLRDAMVA-KVNTSKGFLIDGYPREVQQG 103

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 39.8 bits (92), Expect = 3e-04
 Identities = 30/188 (15%), Positives = 52/188 (27%), Gaps = 49/188 (26%)

Query: 2   TPLSCFRATAVTAAPLSYRLFQLTTSRFYGSVAAAEPLFD-PD--NYYSYYQAESDSDQH 58
                     +T  P    +              AE + D     + + +   +  +   
Sbjct: 313 CRPQDLPREVLTTNPRRLSII-------------AESIRDGLATWDNWKHVNCDKLTTII 359

Query: 59  RDSLRSVTLPDTEGRER-------RRGVH---------WAFIGSPRAKKHVYAEMLSKLL 102
             SL    L   E R+            H         W  +        V  ++    L
Sbjct: 360 ESSLNV--LEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDV-IKSDVMVVVNKLHKYSL 416

Query: 103 -----EVPRISMSSI---VRQDLSPRSSLHKQIANAVNRGEVV-SEDIIFGLLSKRLEDG 153
                +   IS+ SI   ++  L    +LH+ I +  N  +   S+D     L     D 
Sbjct: 417 VEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDD-----LIPPYLDQ 471

Query: 154 YYRGEIGF 161
           Y+   IG 
Sbjct: 472 YFYSHIGH 479

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	177
3umf_A	217	Adenylate kinase; rossmann fold, transferase; 2.05	99.95
3sr0_A	206	Adenylate kinase; phosphoryl transfer analogue, AL	99.95
3gmt_A	230	Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucle	99.91
3tlx_A	243	Adenylate kinase 2; structural genomics, structura	99.85
1ak2_A	233	Adenylate kinase isoenzyme-2; nucleoside monophosp	99.81
3be4_A	217	Adenylate kinase; malaria, cryptosporidium parvum	99.81
3dl0_A	216	Adenylate kinase; phosphotransferase, zinc coordin	99.81
1aky_A	220	Adenylate kinase; ATP:AMP phosphotransferase, myok	99.8
3fb4_A	216	Adenylate kinase; psychrophIle, phosphotransferase	99.8
1e4v_A	214	Adenylate kinase; transferase(phosphotransferase);	99.78
1zak_A	222	Adenylate kinase; ATP:AMP-phosphotransferase, tran	99.77
2xb4_A	223	Adenylate kinase; ATP-binding, nucleotide-binding,	99.76
2cdn_A	201	Adenylate kinase; phosphoryl transfer, associative	99.76
1zd8_A	227	GTP:AMP phosphotransferase mitochondrial; ATP:AMP	99.73
2c95_A	196	Adenylate kinase 1; transferase, AP4A, nucleotide	99.73
1ukz_A	203	Uridylate kinase; transferase; HET: ADP AMP; 1.90A	99.72
2bwj_A	199	Adenylate kinase 5; phosphoryl transfer reaction,	99.7
1qf9_A	194	UMP/CMP kinase, protein (uridylmonophosphate/cytid	99.69
3cm0_A	186	Adenylate kinase; ATP-binding, cytoplasm, nucleoti	99.68
1tev_A	196	UMP-CMP kinase; ploop, NMP binding region, LID reg	99.68
2bbw_A	246	Adenylate kinase 4, AK4; nucleotide kinase, nucleo	99.53
3lw7_A	179	Adenylate kinase related protein (ADKA-like); AMP,	99.38
1ly1_A	181	Polynucleotide kinase; PNK, phosphatase, transfera	99.25
2wwf_A	212	Thymidilate kinase, putative; transferase, malaria	99.12
2pbr_A	195	DTMP kinase, thymidylate kinase; transferase, nucl	99.07
1ltq_A	301	Polynucleotide kinase; phosphatase, alpha/beta, P-	99.06
1nks_A	194	Adenylate kinase; thermophilic, transferase; HET:	99.04
3t61_A	202	Gluconokinase; PSI-biology, structural genomics, p	99.03
2v54_A	204	DTMP kinase, thymidylate kinase; nucleotide biosyn	99.03
1kht_A	192	Adenylate kinase; phosphotransferase, signaling pr	99.02
2rhm_A	193	Putative kinase; P-loop containing nucleoside trip	98.99
1cke_A	227	CK, MSSA, protein (cytidine monophosphate kinase);	98.96
1y63_A	184	LMAJ004144AAA protein; structural genomics, protei	98.94
2p5t_B	253	PEZT; postsegregational killing system, phosphoryl	98.94
3vaa_A	199	Shikimate kinase, SK; structural genomics, center	98.92
2iyv_A	184	Shikimate kinase, SK; transferase, aromatic amino	98.89
1via_A	175	Shikimate kinase; structural genomics, transferase	98.88
4eaq_A	229	DTMP kinase, thymidylate kinase; structural genomi	98.88
2z0h_A	197	DTMP kinase, thymidylate kinase; ATP-binding, nucl	98.85
1zuh_A	168	Shikimate kinase; alpha-beta protein, transferase;	98.85
1nn5_A	215	Similar to deoxythymidylate kinase (thymidylate K;	98.84
3a4m_A	260	L-seryl-tRNA(SEC) kinase; P-loop motif, walker A m	98.82
2if2_A	204	Dephospho-COA kinase; alpha-beta protein, structur	98.81
1jjv_A	206	Dephospho-COA kinase; P-loop nucleotide-binding fo	98.81
2vli_A	183	Antibiotic resistance protein; transferase, tunica	98.8
1vht_A	218	Dephospho-COA kinase; structural genomics, transfe	98.79
2f6r_A	281	COA synthase, bifunctional coenzyme A synthase; 18	98.79
1gvn_B	287	Zeta; postsegregational killing system, plasmid; 1	98.78
2plr_A	213	DTMP kinase, probable thymidylate kinase; TMP-bind	98.75
3trf_A	185	Shikimate kinase, SK; amino acid biosynthesis, tra	98.71
3kb2_A	173	SPBC2 prophage-derived uncharacterized protein YOR	98.68
2pt5_A	168	Shikimate kinase, SK; aromatic amino acid biosynth	98.68
3iij_A	180	Coilin-interacting nuclear ATPase protein; alpha a	98.67
1e6c_A	173	Shikimate kinase; phosphoryl transfer, ADP, shikim	98.67
4e22_A	252	Cytidylate kinase; P-loop, CMP/ATP binding, transf	98.63
3nwj_A	250	ATSK2; P loop, shikimate, nucleoside monophosphate	98.63
1uf9_A	203	TT1252 protein; P-loop, nucleotide binding domain,	98.63
3zvl_A	416	Bifunctional polynucleotide phosphatase/kinase; hy	98.59
1kag_A	173	SKI, shikimate kinase I; transferase, structural g	98.56
3v9p_A	227	DTMP kinase, thymidylate kinase; ssgcid, STRU geno	98.53
3fdi_A	201	Uncharacterized protein; cytidylate kinase like pr	98.51
4eun_A	200	Thermoresistant glucokinase; putative sugar kinase	98.48
2grj_A	192	Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosp	98.48
3ake_A	208	Cytidylate kinase; CMP kinase, CMP complex, open c	98.48
1qhx_A	178	CPT, protein (chloramphenicol phosphotransferase);	98.47
3r20_A	233	Cytidylate kinase; structural genomics, seattle st	98.46
2h92_A	219	Cytidylate kinase; rossmann fold, transferase; HET	98.45
1uj2_A	252	Uridine-cytidine kinase 2; alpha/beta mononucleoti	98.45
1knq_A	175	Gluconate kinase; ALFA/beta structure, transferase	98.42
3hdt_A	223	Putative kinase; structura genomics, PSI-2, protei	98.41
1q3t_A	236	Cytidylate kinase; nucleotide monophosphate kinase	98.4
2ze6_A	253	Isopentenyl transferase; crown GALL tumor, cytokin	98.4
2qor_A	204	Guanylate kinase; phosphotransferase, purine metab	98.37
2axn_A	520	6-phosphofructo-2-kinase/fructose-2,6- biphosphata	98.34
1m7g_A	211	Adenylylsulfate kinase; APS kinase, transferase, s	98.29
4edh_A	213	DTMP kinase, thymidylate kinase; structural genomi	98.26
2qt1_A	207	Nicotinamide riboside kinase 1; non-protein kinase	98.23
3lv8_A	236	DTMP kinase, thymidylate kinase; structural genomi	98.23
4i1u_A	210	Dephospho-COA kinase; structural genomics, niaid,	98.21
2jaq_A	205	Deoxyguanosine kinase; transferase, deoxyribonucle	98.2
2pez_A	179	Bifunctional 3'-phosphoadenosine 5'- phosphosulfat	98.11
1zp6_A	191	Hypothetical protein ATU3015; alpha-beta protein.,	98.08
3crm_A	323	TRNA delta(2)-isopentenylpyrophosphate transferase	98.05
1a7j_A	290	Phosphoribulokinase; transferase, calvin cycle; 2.	98.03
4tmk_A	213	Protein (thymidylate kinase); ATP:DTMP phosphotran	98.02
4hlc_A	205	DTMP kinase, thymidylate kinase; TMK, MRSA, pipiri	98.01
3uie_A	200	Adenylyl-sulfate kinase 1, chloroplastic; rossmann	98.0
3tmk_A	216	Thymidylate kinase; phosphotransferase; HET: T5A;	97.98
2yvu_A	186	Probable adenylyl-sulfate kinase; transferase, str	97.96
3a8t_A	339	Adenylate isopentenyltransferase; rossmann fold pr	97.94
3t15_A	293	Ribulose bisphosphate carboxylase/oxygenase activ	97.93
3d3q_A	340	TRNA delta(2)-isopentenylpyrophosphate transferase	97.9
3asz_A	211	Uridine kinase; cytidine phosphorylation, transfer	97.87
3ec2_A	180	DNA replication protein DNAC; helicase loader, rep	97.87
3ld9_A	223	DTMP kinase, thymidylate kinase; ssgcid, NIH, niai	97.87
3exa_A	322	TRNA delta(2)-isopentenylpyrophosphate transferase	97.87
1bif_A	469	6-phosphofructo-2-kinase/ fructose-2,6-bisphospha;	97.86
2gks_A	546	Bifunctional SAT/APS kinase; transferase, sulfuryl	97.81
1x6v_B	630	Bifunctional 3'-phosphoadenosine 5'- phosphosulfat	97.81
1dek_A	241	Deoxynucleoside monophosphate kinase; transferase,	97.81
3foz_A	316	TRNA delta(2)-isopentenylpyrophosphate transferas;	97.81
2bdt_A	189	BH3686; alpha-beta protein, structural genomics, P	97.78
2qz4_A	262	Paraplegin; AAA+, SPG7, protease, ADP, structural	97.77
3eie_A	322	Vacuolar protein sorting-associated protein 4; AAA	97.76
1lv7_A	257	FTSH; alpha/beta domain, four helix bundle, hydrol	97.75
2jeo_A	245	Uridine-cytidine kinase 1; UCK, transferase, ATP-b	97.73
4b4t_M	434	26S protease regulatory subunit 6A; hydrolase, AAA	97.7
2j41_A	207	Guanylate kinase; GMP, GMK, transferase, ATP-bindi	97.7
3syl_A	309	Protein CBBX; photosynthesis, rubisco activase, AA	97.69
3tr0_A	205	Guanylate kinase, GMP kinase; purines, pyrimidines	97.68
3h4m_A	285	Proteasome-activating nucleotidase; ATPase, PAN, A	97.67
3c8u_A	208	Fructokinase; YP_612366.1, putative fructose trans	97.67
4b4t_K	428	26S protease regulatory subunit 6B homolog; hydrol	97.67
3b9p_A	297	CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc	97.66
4b4t_L	437	26S protease subunit RPT4; hydrolase, AAA-atpases,	97.66
3hjn_A	197	DTMP kinase, thymidylate kinase; ATP-binding, nucl	97.65
1d2n_A	272	N-ethylmaleimide-sensitive fusion protein; hexamer	97.65
3ch4_B	202	Pmkase, phosphomevalonate kinase; parallel beta-sh	97.65
4b4t_J	405	26S protease regulatory subunit 8 homolog; hydrola	97.64
3hws_A	363	ATP-dependent CLP protease ATP-binding subunit CL;	97.64
3cf0_A	301	Transitional endoplasmic reticulum ATPase; AAA, P9	97.64
1ofh_A	310	ATP-dependent HSL protease ATP-binding subunit HSL	97.61
1gtv_A	214	TMK, thymidylate kinase; transferase, transferase	97.6
1p5z_B	263	DCK, deoxycytidine kinase; nucleoside kinase, P-lo	97.6
1g41_A	444	Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dep	97.59
2x8a_A	274	Nuclear valosin-containing protein-like; nuclear p	97.58
1kgd_A	180	CASK, peripheral plasma membrane CASK; maguk, guan	97.57
1jbk_A	195	CLPB protein; beta barrel, chaperone; 1.80A {Esche	97.57
3tau_A	208	Guanylate kinase, GMP kinase; structural genomics,	97.56
4b4t_H	467	26S protease regulatory subunit 7 homolog; hydrola	97.54
1m8p_A	573	Sulfate adenylyltransferase; rossmann fold, phosph	97.54
2ocp_A	241	DGK, deoxyguanosine kinase; protein-nucleotide com	97.54
3eph_A	409	TRNA isopentenyltransferase; transferase, alternat	97.54
2p65_A	187	Hypothetical protein PF08_0063; CLPB, malaria, str	97.53
1g8f_A	511	Sulfate adenylyltransferase; alpha-beta protein, b	97.53
4b4t_I	437	26S protease regulatory subunit 4 homolog; hydrola	97.52
1um8_A	376	ATP-dependent CLP protease ATP-binding subunit CL;	97.52
2r62_A	268	Cell division protease FTSH homolog; ATPase domain	97.51
1ixz_A	254	ATP-dependent metalloprotease FTSH; AAA domain fol	97.51
3bos_A	242	Putative DNA replication factor; P-loop containing	97.51
3ney_A	197	55 kDa erythrocyte membrane protein; structural ge	97.49
1xwi_A	322	SKD1 protein; VPS4B, AAA ATPase, protein transport	97.45
2qp9_X	355	Vacuolar protein sorting-associated protein 4; ATP	97.45
1sq5_A	308	Pantothenate kinase; P-loop, transferase; HET: PAU	97.45
3cf2_A	806	TER ATPase, transitional endoplasmic reticulum ATP	97.44
2v1u_A	387	Cell division control protein 6 homolog; DNA repli	97.43
2ga8_A	359	Hypothetical 39.9 kDa protein; YFR007W, YFH7, unkn	97.43
3d8b_A	357	Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, s	97.41
1rz3_A	201	Hypothetical protein rbstp0775; MCSG, structural g	97.41
2c9o_A	456	RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-	97.38
3pfi_A	338	Holliday junction ATP-dependent DNA helicase RUVB;	97.38
2w58_A	202	DNAI, primosome component (helicase loader); ATP-b	97.37
1iy2_A	278	ATP-dependent metalloprotease FTSH; AAA domain fol	97.36
3tqc_A	321	Pantothenate kinase; biosynthesis of cofactors, pr	97.35
1odf_A	290	YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser	97.35
2qmh_A	205	HPR kinase/phosphorylase; V267F mutation, ATP-bind	97.34
3te6_A	318	Regulatory protein SIR3; heterochromatin, gene sil	97.34
3vfd_A	389	Spastin; ATPase, microtubule severing, hydrolase;	97.34
1ye8_A	178	Protein THEP1, hypothetical UPF0334 kinase-like pr	97.33
2kjq_A	149	DNAA-related protein; solution structure, NESG, st	97.31
1in4_A	334	RUVB, holliday junction DNA helicase RUVB; AAA+-cl	97.29
2ce7_A	476	Cell division protein FTSH; metalloprotease; HET:	97.26
3n70_A	145	Transport activator; sigma-54, ntpase, PSI, MCSG,	97.26
3pvs_A	447	Replication-associated recombination protein A; ma	97.25
1sxj_A	516	Activator 1 95 kDa subunit; clamp loader, processi	97.21
1fnn_A	389	CDC6P, cell division control protein 6; ORC1, AAA	97.21
2zan_A	444	Vacuolar protein sorting-associating protein 4B; S	97.19
1hqc_A	324	RUVB; extended AAA-ATPase domain, complex with nuc	97.18
4fcw_A	311	Chaperone protein CLPB; AAA domain; HET: ADP; 2.35	97.18
3a00_A	186	Guanylate kinase, GMP kinase; domain movement, dim	97.16
1z06_A	189	RAS-related protein RAB-33B; RAB GTPase, RAB33B GT	97.16
2chg_A	226	Replication factor C small subunit; DNA-binding pr	97.15
1l8q_A	324	Chromosomal replication initiator protein DNAA; AA	97.15
1njg_A	250	DNA polymerase III subunit gamma; rossman-like fol	97.15
3cf2_A	806	TER ATPase, transitional endoplasmic reticulum ATP	97.13
1lvg_A	198	Guanylate kinase, GMP kinase; transferase; HET: AD	97.13
2r44_A	331	Uncharacterized protein; putative ATPase, structur	97.12
3uk6_A	368	RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding	97.11
2dhr_A	499	FTSH; AAA+ protein, hexameric Zn metalloprotease,	97.1
2wjg_A	188	FEOB, ferrous iron transport protein B homolog; me	97.09
3lnc_A	231	Guanylate kinase, GMP kinase; ALS collaborative cr	97.09
2y8e_A	179	RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti	97.09
3co5_A	143	Putative two-component system transcriptional RES	97.08
3pxg_A	468	Negative regulator of genetic competence CLPC/MEC;	97.07
2oil_A	193	CATX-8, RAS-related protein RAB-25; G-protein, GDP	97.06
3m6a_A	543	ATP-dependent protease LA 1; alpha, beta, ATP-bind	97.03
2qby_B	384	CDC6 homolog 3, cell division control protein 6 ho	97.02
1c9k_A	180	COBU, adenosylcobinamide kinase; alpha/beta struct	97.01
1z6g_A	218	Guanylate kinase; structural genomics, SGC, struct	97.0
1ex7_A	186	Guanylate kinase; substrate-induced FIT, domain mo	96.99
1tue_A	212	Replication protein E1; helicase, replication, E1E	96.99
1upt_A	171	ARL1, ADP-ribosylation factor-like protein 1; hydr	96.99
1oix_A	191	RAS-related protein RAB-11A; small G protein, intr	96.98
2a5j_A	191	RAS-related protein RAB-2B; GTPase, signal transdu	96.97
2qby_A	386	CDC6 homolog 1, cell division control protein 6 ho	96.97
2ew1_A	201	RAS-related protein RAB-30; G-protein, GTP analogu	96.97
3hu3_A	489	Transitional endoplasmic reticulum ATPase; VCP, tr	96.97
4gp7_A	171	Metallophosphoesterase; polynucleotide kinase phos	96.96
1svm_A	377	Large T antigen; AAA+ fold, viral protein; HET: AT	96.95
2bjv_A	265	PSP operon transcriptional activator; AAA, transcr	96.94
3ihw_A	184	Centg3; RAS, centaurin, GTPase, structural genomic	96.88
1kao_A	167	RAP2A; GTP-binding protein, small G protein, GDP,	96.88
1znw_A	207	Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans	96.87
1z2a_A	168	RAS-related protein RAB-23; RAB GTPase, vesicular	96.87
2qgz_A	308	Helicase loader, putative primosome component; str	96.87
3pxi_A	758	Negative regulator of genetic competence CLPC/MEC;	96.87
1m7b_A	184	RND3/RHOE small GTP-binding protein; small GTPase,	96.87
1g8p_A	350	Magnesium-chelatase 38 kDa subunit; parallel beta	96.86
3aez_A	312	Pantothenate kinase; transferase, homodimer, COA b	96.85
3u61_B	324	DNA polymerase accessory protein 44; AAA+, ATP hyd	96.85
3cr8_A	552	Sulfate adenylyltranferase, adenylylsulfate kinase	96.84
2ce2_X	166	GTPase HRAS; signaling protein, guanine nucleotide	96.83
2gf9_A	189	RAS-related protein RAB-3D; G-protein, structural	96.83
1s96_A	219	Guanylate kinase, GMP kinase; E.coli, dimer, SAD,	96.8
1ypw_A	806	Transitional endoplasmic reticulum ATPase; AAA, P9	96.79
2vp4_A	230	Deoxynucleoside kinase; ATP-binding, DNA synthesis	96.79
2ehv_A	251	Hypothetical protein PH0186; KAIC, RECA ATPase, un	96.79
2w0m_A	235	SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus	96.79
4a74_A	231	DNA repair and recombination protein RADA; hydrola	96.78
1r6b_X	758	CLPA protein; AAA+, N-terminal domain, CLPS, cryst	96.78
1sxj_D	353	Activator 1 41 kDa subunit; clamp loader, processi	96.78
2p5s_A	199	RAS and EF-hand domain containing; G-protein, RAB,	96.74
1u8z_A	168	RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH	96.74
2cvh_A	220	DNA repair and recombination protein RADB; filamen	96.74
2hxs_A	178	RAB-26, RAS-related protein RAB-28; GTPase, signal	96.73
2gco_A	201	H9, RHO-related GTP-binding protein RHOC; GTPase,s	96.73
1c1y_A	167	RAS-related protein RAP-1A; GTP-binding proteins,	96.72
2bov_A	206	RAla, RAS-related protein RAL-A; C3BOT, exoenzyme,	96.71
1iqp_A	327	RFCS; clamp loader, extended AAA-ATPase domain, co	96.69
1xjc_A	169	MOBB protein homolog; structural genomics, midwest	96.69
1wms_A	177	RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p	96.69
3clv_A	208	RAB5 protein, putative; malaria, GTPase, structura	96.68
1zd9_A	188	ADP-ribosylation factor-like 10B; transport protei	96.65
2fn4_A	181	P23, RAS-related protein R-RAS; GDP/GTP binding, G	96.64
2z4s_A	440	Chromosomal replication initiator protein DNAA; AA	96.63
2nzj_A	175	GTP-binding protein REM 1; GDP/GTP binding, GTP hy	96.63
1ypw_A	806	Transitional endoplasmic reticulum ATPase; AAA, P9	96.63
2wji_A	165	Ferrous iron transport protein B homolog; membrane	96.63
2dyk_A	161	GTP-binding protein; GTPase, ribosome-binding prot	96.63
2lkc_A	178	Translation initiation factor IF-2; NMR {Geobacill	96.63
1jr3_A	373	DNA polymerase III subunit gamma; processivity, pr	96.62
1n0w_A	243	DNA repair protein RAD51 homolog 1; DNA repair, ho	96.62
1sxj_C	340	Activator 1 40 kDa subunit; clamp loader, processi	96.61
3c5c_A	187	RAS-like protein 12; GDP, GTPase, structural genom	96.61
1sxj_E	354	Activator 1 40 kDa subunit; clamp loader, processi	96.61
1ek0_A	170	Protein (GTP-binding protein YPT51); vesicular tra	96.61
1z0j_A	170	RAB-22, RAS-related protein RAB-22A; RAB GTPase, R	96.61
1r2q_A	170	RAS-related protein RAB-5A; GTPase, GNP, atomic re	96.6
2dr3_A	247	UPF0273 protein PH0284; RECA superfamily ATPase, h	96.6
3t1o_A	198	Gliding protein MGLA; G domain containing protein,	96.59
1w5s_A	412	Origin recognition complex subunit 2 ORC2; replica	96.59
3bc1_A	195	RAS-related protein RAB-27A; RAB27, GTPase, RAB, s	96.59
3con_A	190	GTPase NRAS; structural genomics consortium, SGC,	96.58
1z08_A	170	RAS-related protein RAB-21; RAB GTPase, vesicular	96.58
1ky3_A	182	GTP-binding protein YPT7P; vesicular traffic, GTP	96.56
2chq_A	319	Replication factor C small subunit; DNA-binding pr	96.56
2h17_A	181	ADP-ribosylation factor-like protein 5A; GDP, GTPa	96.55
3pxi_A	758	Negative regulator of genetic competence CLPC/MEC;	96.55
2a9k_A	187	RAS-related protein RAL-A; bacterial ADP-ribosyltr	96.55
2r2a_A	199	Uncharacterized protein; zonular occludens toxin,	96.55
2f9l_A	199	RAB11B, member RAS oncogene family; RAB11B GTPase,	96.55
2orw_A	184	Thymidine kinase; TMTK, TP4A, transferase; HET: 4T	96.55
2efe_B	181	Small GTP-binding protein-like; GEF, GTPase, VPS9,	96.54
2g6b_A	180	RAS-related protein RAB-26; G-protein, GTP analogu	96.54
1moz_A	183	ARL1, ADP-ribosylation factor-like protein 1; GTP-	96.53
2erx_A	172	GTP-binding protein DI-RAS2; GTP hydrolysis, trans	96.53
1fzq_A	181	ADP-ribosylation factor-like protein 3; protein-GD	96.52
1g16_A	170	RAS-related protein SEC4; G protein RAB, signaling	96.52
3tkl_A	196	RAS-related protein RAB-1A; vesicle trafficking, p	96.51
3kkq_A	183	RAS-related protein M-RAS; GTP-binding, GTPase, si	96.51
2ged_A	193	SR-beta, signal recognition particle receptor beta	96.5
3tw8_B	181	RAS-related protein RAB-35; longin domain, RAB GTP	96.5
1vma_A	306	Cell division protein FTSY; TM0570, structural gen	96.49
4bas_A	199	ADP-ribosylation factor, putative (small GTPase, p	96.49
3oes_A	201	GTPase rhebl1; small GTPase, structural genomics,	96.48
2wsm_A	221	Hydrogenase expression/formation protein (HYPB); m	96.48
1mh1_A	186	RAC1; GTP-binding, GTPase, small G-protein, RHO fa	96.48
1sxj_B	323	Activator 1 37 kDa subunit; clamp loader, processi	96.48
2fv8_A	207	H6, RHO-related GTP-binding protein RHOB; GDP/GTP	96.47
4dsu_A	189	GTPase KRAS, isoform 2B; small G-protein, signalin	96.47
1nrj_B	218	SR-beta, signal recognition particle receptor beta	96.46
1z0f_A	179	RAB14, member RAS oncogene family; RAB GTPase, ves	96.46
2o52_A	200	RAS-related protein RAB-4B; G-protein, GDP, struct	96.45
2i3b_A	189	HCR-ntpase, human cancer-related ntpase; AAA, ross	96.45
1cr0_A	296	DNA primase/helicase; RECA-type protein fold, tran	96.44
2hf9_A	226	Probable hydrogenase nickel incorporation protein	96.41
1p6x_A	334	Thymidine kinase; P-loop, LID, transferase; HET: T	96.4
3bwd_D	182	RAC-like GTP-binding protein ARAC6; G domain, cyto	96.39
2gj8_A	172	MNME, tRNA modification GTPase TRME; G-domain dime	96.39
3q85_A	169	GTP-binding protein REM 2; G-domain, CAV2 beta, si	96.39
2atv_A	196	RERG, RAS-like estrogen-regulated growth inhibitor	96.38
3e70_C	328	DPA, signal recognition particle receptor; FTSY, S	96.38
3q72_A	166	GTP-binding protein RAD; G-domain, CAV2 beta, sign	96.38
2qen_A	350	Walker-type ATPase; unknown function; HET: ADP; 2.	96.37
1np6_A	174	Molybdopterin-guanine dinucleotide biosynthesis pr	96.37
2v9p_A	305	Replication protein E1; AAA+ molecular motor, DNA	96.36
2zej_A	184	Dardarin, leucine-rich repeat kinase 2; parkinson'	96.36
1ojl_A	304	Transcriptional regulatory protein ZRAR; response	96.35
2bme_A	186	RAB4A, RAS-related protein RAB4A; GTP-binding prot	96.35
3lxx_A	239	GTPase IMAP family member 4; structural genomics c	96.35
2j1l_A	214	RHO-related GTP-binding protein RHOD; GTPase, memb	96.34
2gf0_A	199	GTP-binding protein DI-RAS1; GDP/GTP binding, GTP	96.33
1zcb_A	362	G alpha I/13; GTP-binding, lipoprotein, membrane,	96.32
1htw_A	158	HI0065; nucleotide-binding fold, structural genomi	96.32
2eyu_A	261	Twitching motility protein PILT; pilus retraction	96.31
1u0j_A	267	DNA replication protein; AAA+ protein, P-loop atpa	96.3
1vg8_A	207	RAS-related protein RAB-7; GTP-binding protein, pr	96.3
3b9q_A	302	Chloroplast SRP receptor homolog, alpha subunit CP	96.29
1r8s_A	164	ADP-ribosylation factor 1; protein transport/excha	96.29
1rj9_A	304	FTSY, signal recognition protein; SRP-GTPase domai	96.28
1qvr_A	854	CLPB protein; coiled coil, AAA ATPase, chaperone;	96.28
2h57_A	190	ADP-ribosylation factor-like protein 6; GTP, GTPas	96.28
3cph_A	213	RAS-related protein SEC4; RAB GTPase, prenylation,	96.28
1ksh_A	186	ARF-like protein 2; small GTPase, small GTP-bindin	96.27
1x3s_A	195	RAS-related protein RAB-18; GTPase, GNP, structura	96.27
1m2o_B	190	GTP-binding protein SAR1, GTP binding protein; zin	96.27
2iwr_A	178	Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi	96.27
2fg5_A	192	RAB-22B, RAS-related protein RAB-31; G-protein, GT	96.27
1qvr_A	854	CLPB protein; coiled coil, AAA ATPase, chaperone;	96.27
3t5g_A	181	GTP-binding protein RHEB; immunoglobulin-like beta	96.24
3reg_A	194	RHO-like small GTPase; cytoskeleton, nucleotide-bi	96.24
2px0_A	296	Flagellar biosynthesis protein FLHF; SRP GTPase, f	96.24
1svi_A	195	GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro	96.24
2gno_A	305	DNA polymerase III, gamma subunit-related protein;	96.24
1lw7_A	365	Transcriptional regulator NADR; NMN, NMN adenylyl	96.24
3nbx_X	500	ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structu	96.22
1zj6_A	187	ADP-ribosylation factor-like protein 5; ARL, GTP-b	96.22
3dz8_A	191	RAS-related protein RAB-3B; GDP, GTPase, structura	96.22
2q3h_A	201	RAS homolog gene family, member U; GTPase, structu	96.22
1a5t_A	334	Delta prime, HOLB; zinc finger, DNA replication; 2	96.21
3llu_A	196	RAS-related GTP-binding protein C; structural geno	96.21
3pqc_A	195	Probable GTP-binding protein ENGB; rossmann fold,	96.21
2hup_A	201	RAS-related protein RAB-43; G-protein, GDP, struct	96.2
2b6h_A	192	ADP-ribosylation factor 5; membrane trafficking, G	96.18
1yrb_A	262	ATP(GTP)binding protein; GTPase, P-loop, rossman f	96.18
1r6b_X	758	CLPA protein; AAA+, N-terminal domain, CLPS, cryst	96.17
1pui_A	210	ENGB, probable GTP-binding protein ENGB; structura	96.16
2f7s_A	217	C25KG, RAS-related protein RAB-27B; G-protein, str	96.16
3p32_A	355	Probable GTPase RV1496/MT1543; structural genomics	96.15
1nlf_A	279	Regulatory protein REPA; replicative DNA helicase	96.12
3k53_A	271	Ferrous iron transport protein B; GTPase fold, hel	96.12
2fh5_B	214	SR-beta, signal recognition particle receptor beta	96.1
2cxx_A	190	Probable GTP-binding protein ENGB; structural geno	96.09
1f6b_A	198	SAR1; gtpases, N-terminal helix, Mg-containing com	96.09
2zts_A	251	Putative uncharacterized protein PH0186; KAIC like	96.09
1zbd_A	203	Rabphilin-3A; G protein, effector, RABCDR, synapti	96.08
2qm8_A	337	GTPase/ATPase; G protein, G3E, metallochaperone, c	96.08
4gzl_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	96.05
3gj0_A	221	GTP-binding nuclear protein RAN; G protein, GDP, a	96.05
2il1_A	192	RAB12; G-protein, GDP, GTPase, predicted, structur	96.05
4dkx_A	216	RAS-related protein RAB-6A; GTP binding fold, memb	96.05
1gwn_A	205	RHO-related GTP-binding protein RHOE; GTPase, inac	96.04
3tif_A	235	Uncharacterized ABC transporter ATP-binding prote;	96.02
3kl4_A	433	SRP54, signal recognition 54 kDa protein; signal r	96.02
2bcg_Y	206	Protein YP2, GTP-binding protein YPT1; RABGTPase,	96.02
2vhj_A	331	Ntpase P4, P4; non- hydrolysable ATP analogue, hyd	96.01
2og2_A	359	Putative signal recognition particle receptor; nuc	96.01
3dm5_A	443	SRP54, signal recognition 54 kDa protein; protein-	96.01
3cbq_A	195	GTP-binding protein REM 2; FLJ38964A, structural g	95.98
3b85_A	208	Phosphate starvation-inducible protein; PHOH2, ATP	95.96
2www_A	349	Methylmalonic aciduria type A protein, mitochondri	95.95
3f9v_A	595	Minichromosome maintenance protein MCM; replicativ	95.94
2f1r_A	171	Molybdopterin-guanine dinucleotide biosynthesis pr	95.94
2fu5_C	183	RAS-related protein RAB-8A; MSS4:RAB8 protein comp	95.94
2cbz_A	237	Multidrug resistance-associated protein 1; ABC pro	95.93
2pcj_A	224	ABC transporter, lipoprotein-releasing system ATP-	95.93
2i1q_A	322	DNA repair and recombination protein RADA; ATPase,	95.92
1pzn_A	349	RAD51, DNA repair and recombination protein RAD51,	95.92
2fna_A	357	Conserved hypothetical protein; structural genomic	95.91
2x77_A	189	ADP-ribosylation factor; GTP-binding protein, smal	95.9
2j0v_A	212	RAC-like GTP-binding protein ARAC7; nucleotide-bin	95.9
2ewv_A	372	Twitching motility protein PILT; pilus retraction	95.89
3q3j_B	214	RHO-related GTP-binding protein RHO6; RAS-binding	95.87
2b8t_A	223	Thymidine kinase; deoxyribonucleoside kinase, zinc	95.87
3sop_A	270	Neuronal-specific septin-3; hydrolase; HET: GDP; 2	95.86
2qu8_A	228	Putative nucleolar GTP-binding protein 1; GTPase,	95.86
1mv5_A	243	LMRA, multidrug resistance ABC transporter ATP-bin	95.84
2v3c_C	432	SRP54, signal recognition 54 kDa protein; nucleoti	95.84
2onk_A	240	Molybdate/tungstate ABC transporter, ATP-binding p	95.83
2atx_A	194	Small GTP binding protein TC10; GTPase, P-loop, al	95.83
2yhs_A	503	FTSY, cell division protein FTSY; cell cycle, prot	95.82
2xtp_A	260	GTPase IMAP family member 2; immune system, G prot	95.8
1b0u_A	262	Histidine permease; ABC transporter, transport pro	95.79
2cjw_A	192	GTP-binding protein GEM; nucleotide-binding, small	95.78
3k1j_A	604	LON protease, ATP-dependent protease LON; ATP-bind	95.78
1zu4_A	320	FTSY; GTPase, signal recognition particle, SRP, re	95.77
2d2e_A	250	SUFC protein; ABC-ATPase, SUF protein, 310-helix,	95.76
1g6h_A	257	High-affinity branched-chain amino acid transport	95.75
3a1s_A	258	Iron(II) transport protein B; FEOB, iron transport	95.74
3gfo_A	275	Cobalt import ATP-binding protein CBIO 1; structur	95.73
2ff7_A	247	Alpha-hemolysin translocation ATP-binding protein	95.73
2ixe_A	271	Antigen peptide transporter 1; ABC ATPase, hydrola	95.73
4g1u_C	266	Hemin import ATP-binding protein HMUV; membrane tr	95.71
3hr8_A	356	Protein RECA; alpha and beta proteins (A/B, A+B),	95.71
2ghi_A	260	Transport protein; multidrug resistance protein, M	95.71
2zu0_C	267	Probable ATP-dependent transporter SUFC; iron-sulf	95.71
2r8r_A	228	Sensor protein; KDPD, PFAM02702, MCSG, structural	95.71
2p67_A	341	LAO/AO transport system kinase; ARGK, structural G	95.7
2olj_A	263	Amino acid ABC transporter; ABC domain, ATPase, hy	95.69
3cmu_A	2050	Protein RECA, recombinase A; homologous recombinat	95.68
1ji0_A	240	ABC transporter; ATP binding protein, structural g	95.68
2pze_A	229	Cystic fibrosis transmembrane conductance regulat;	95.66
3tqf_A	181	HPR(Ser) kinase; transferase, hydrolase; 2.80A {Co	95.66
3cpj_B	223	GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl	95.66
3lxw_A	247	GTPase IMAP family member 1; immunity, structural	95.66
1v5w_A	343	DMC1, meiotic recombination protein DMC1/LIM15 hom	95.65
3jvv_A	356	Twitching mobility protein; hexameric P-loop ATPas	95.65
1vpl_A	256	ABC transporter, ATP-binding protein; TM0544, stru	95.59
1sgw_A	214	Putative ABC transporter; structural genomics, P p	95.58
2yz2_A	266	Putative ABC transporter ATP-binding protein TM_0;	95.54
2gza_A	361	Type IV secretion system protein VIRB11; ATPase, h	95.53
2qi9_C	249	Vitamin B12 import ATP-binding protein BTUD; inner	95.53
2yc2_C	208	IFT27, small RAB-related GTPase; transport protein	95.52
2ihy_A	279	ABC transporter, ATP-binding protein; ATPase, ABC	95.51
3lda_A	400	DNA repair protein RAD51; DNA binding protein, ATP	95.49
1e2k_A	331	Thymidine kinase; transferase, antiviral drug, enz	95.48
2j37_W	504	Signal recognition particle 54 kDa protein (SRP54)	95.48
4djt_A	218	GTP-binding nuclear protein GSP1; structural genom	95.46
1j8m_F	297	SRP54, signal recognition 54 kDa protein; signalin	95.44
2zr9_A	349	Protein RECA, recombinase A; recombination, RECA m	95.44
2nq2_C	253	Hypothetical ABC transporter ATP-binding protein H	95.42
2g3y_A	211	GTP-binding protein GEM; small GTPase, GDP, inacti	95.42
2z43_A	324	DNA repair and recombination protein RADA; archaea	95.41
3th5_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	94.36
1of1_A	376	Thymidine kinase; transferase, antiviral drug, enz	95.36
2npi_A	460	Protein CLP1; CLP1-PCF11 complex, ATP binding, ter	95.35
1p9r_A	418	General secretion pathway protein E; bacterial typ	95.3
3i8s_A	274	Ferrous iron transport protein B; GTPase, GPCR, ir	95.27
1ls1_A	295	Signal recognition particle protein; FFH, SRP54, S	95.27
3c5h_A	255	Glucocorticoid receptor DNA-binding factor 1; RAS,	95.26
2yyz_A	359	Sugar ABC transporter, ATP-binding protein; sugar	95.19
4dhe_A	223	Probable GTP-binding protein ENGB; melioidosis, RA	95.18
2pjz_A	263	Hypothetical protein ST1066; ATP binding protein,	95.17
3upu_A	459	ATP-dependent DNA helicase DDA; RECA-like domain,	95.16
3fvq_A	359	Fe(3+) IONS import ATP-binding protein FBPC; nucle	95.15
3b1v_A	272	Ferrous iron uptake transporter protein B; G prote	95.14
1u94_A	356	RECA protein, recombinase A; homologous recombinat	95.11
2it1_A	362	362AA long hypothetical maltose/maltodextrin trans	95.09
3rlf_A	381	Maltose/maltodextrin import ATP-binding protein M;	95.08
3l0i_B	199	RAS-related protein RAB-1A; GEF-GDF-RAB complex, G	95.06
1z47_A	355	CYSA, putative ABC-transporter ATP-binding protein	95.05
2bbs_A	290	Cystic fibrosis transmembrane conductance regulato	95.04
1v43_A	372	Sugar-binding transport ATP-binding protein; ATPas	95.04
1ega_A	301	Protein (GTP-binding protein ERA); GTPase, RNA-bin	95.02
2pt7_A	330	CAG-ALFA; ATPase, protein-protein complex, type IV	95.02
3kta_A	182	Chromosome segregation protein SMC; structural mai	94.99
3iby_A	256	Ferrous iron transport protein B; G protein, G dom	94.97
1tf7_A	525	KAIC; homohexamer, hexamer, circadian clock protei	94.97
1g29_1	372	MALK, maltose transport protein MALK; ATPase, acti	94.95
1osn_A	341	Thymidine kinase, VZV-TK; chickenpox, BVDU-MP, tra	94.94
2rcn_A	358	Probable GTPase ENGC; YJEQ, circularly permuted, G	94.94
2xxa_A	433	Signal recognition particle protein; protein trans	94.93
2qnr_A	301	Septin-2, protein NEDD5; structural genomics conso	94.93
1mky_A	439	Probable GTP-binding protein ENGA; GTPase, DER, KH	94.92
3r7w_A	307	Gtpase1, GTP-binding protein GTR1; RAG gtpases, GT	94.91
2oap_1	511	GSPE-2, type II secretion system protein; hexameri	94.9
3nh6_A	306	ATP-binding cassette SUB-family B member 6, mitoc;	94.9
2yv5_A	302	YJEQ protein; hydrolase, GTPase, permutation, stru	94.9
1xp8_A	366	RECA protein, recombinase A; recombination, radior	94.89
1nij_A	318	Hypothetical protein YJIA; structural genomics, P-	94.88
1xx6_A	191	Thymidine kinase; NESG, northeast structural genom	94.87
2qag_B	427	Septin-6, protein NEDD5; cell cycle, cell division	94.87
3bh0_A	315	DNAB-like replicative helicase; ATPase, replicatio	94.82
3tui_C	366	Methionine import ATP-binding protein METN; ABC-tr	94.82
2aka_B	299	Dynamin-1; fusion protein, GTPase domain, myosin,	94.81
3e1s_A	574	Exodeoxyribonuclease V, subunit RECD; alpha and be	94.8
3d31_A	348	Sulfate/molybdate ABC transporter, ATP-binding pro	94.79
3gd7_A	390	Fusion complex of cystic fibrosis transmembrane co	94.78
2r6a_A	454	DNAB helicase, replicative helicase; replication,	94.72
1u0l_A	301	Probable GTPase ENGC; permutation, OB-fold, zinc-f	94.71
1tq4_A	413	IIGP1, interferon-inducible GTPase; interferon gam	94.68
1h65_A	270	Chloroplast outer envelope protein OEP34; GTPase,	94.53
1jwy_B	315	Dynamin A GTPase domain; dynamin, GTPase, GDP, myo	94.5
2wkq_A	332	NPH1-1, RAS-related C3 botulinum toxin substrate 1	94.5
3def_A	262	T7I23.11 protein; chloroplast, TOC33, GTPase, hydr	94.48
1oxx_K	353	GLCV, glucose, ABC transporter, ATP binding protei	94.48
1tf7_A	525	KAIC; homohexamer, hexamer, circadian clock protei	94.47
1ni3_A	392	YCHF GTPase, YCHF GTP-binding protein; structural	94.47
2ffh_A	425	Protein (FFH); SRP54, signal recognition particle,	94.45
2e87_A	357	Hypothetical protein PH1320; GTP-binding, GTPase,	94.43
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	94.42
3o47_A	329	ADP-ribosylation factor GTPase-activating protein	94.37
3b5x_A	582	Lipid A export ATP-binding/permease protein MSBA;	94.35
3qf4_B	598	Uncharacterized ABC transporter ATP-binding prote	94.34
3t5d_A	274	Septin-7; GTP-binding protein, cytoskeleton, signa	94.34
1ko7_A	314	HPR kinase/phosphatase; protein kinase, phosphotra	94.32
4ag6_A	392	VIRB4 ATPase, type IV secretory pathway VIRB4 comp	94.3
2obl_A	347	ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O	94.25
3io5_A	333	Recombination and repair protein; storage dimer, i	94.24
1wf3_A	301	GTP-binding protein; GTPase, riken structural geno	94.21
2qag_C	418	Septin-7; cell cycle, cell division, GTP-binding,	94.1
2dpy_A	438	FLII, flagellum-specific ATP synthase; beta barrel	94.08
2dby_A	368	GTP-binding protein; GDP, structural genomics, NPP	94.01
2q6t_A	444	DNAB replication FORK helicase; hydrolase; 2.90A {	93.95
3dpu_A	535	RAB family protein; roccor, G-domain, COR, GTP-bin	93.93
4dcu_A	456	GTP-binding protein ENGA; GTPase, GDP, protein bin	93.93
3b60_A	582	Lipid A export ATP-binding/permease protein MSBA;	93.92
2yl4_A	595	ATP-binding cassette SUB-family B member 10, mitoc	93.9
1z6t_A	591	APAF-1, apoptotic protease activating factor 1; ca	93.88
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	93.85

>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}

Probab=99.95  E-value=2.8e-28  Score=200.20  Aligned_cols=100  Identities=21%  Similarity=0.334  Sum_probs=93.8

Q ss_pred             CCCeEEEEEcCCCCCchHHHHHHHHHhCCCeeeCchhhhhccCCCCchHHHHHHHHHcCCcchHHHHHHHHHHHHHccCC
Q 030464           76 RRGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGLLSKRLEDGYY  155 (177)
Q Consensus        76 ~~~~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~dLlr~el~~~s~lgk~i~~~l~~G~~Ipdeli~~Ll~~~L~~~~~  155 (177)
                      .++.+|+|+|||||||+|+|+.|+++||++|||+||++|+++..++++|+.+++++++|++|||+++.+++.++|.+..+
T Consensus        27 ~k~kiI~llGpPGsGKgTqa~~L~~~~g~~hIstGdllR~~i~~~t~lg~~~~~~~~~G~lVpde~~~~lv~~~l~~~~~  106 (217)
T 3umf_A           27 AKAKVIFVLGGPGSGKGTQCEKLVQKFHFNHLSSGDLLRAEVQSGSPKGKELKAMMERGELVPLEVVLALLKEAMIKLVD  106 (217)
T ss_dssp             TSCEEEEEECCTTCCHHHHHHHHHHHHCCEEECHHHHHHHHHTTCCHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHTT
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHHHHHCCceEcHHHHHHHHHHcCCchHHHHHHHHhcCCCCCHHHHHHHHHHHHhhccc
Confidence            46678889999999999999999999999999999999999999999999999999999999999999999999987654


Q ss_pred             CCcceEEEeCCCCCHHHHHhc
Q 030464          156 RGEIGFILDGLPRSRIQATIS  176 (177)
Q Consensus       156 ~~~~G~ILDGfPrt~~QAe~L  176 (177)
                       ...||||||||||..||+.|
T Consensus       107 -~~~g~ilDGfPRt~~Qa~~l  126 (217)
T 3umf_A          107 -KNCHFLIDGYPRELDQGIKF  126 (217)
T ss_dssp             -TCSEEEEETBCSSHHHHHHH
T ss_pred             -cccCcccccCCCcHHHHHHH
Confidence             46899999999999999876

>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*

Probab=99.95  E-value=1.9e-28  Score=199.17  Aligned_cols=93  Identities=30%  Similarity=0.456  Sum_probs=88.6

Q ss_pred             eEEEEEcCCCCCchHHHHHHHHHhCCCeeeCchhhhhccCCCCchHHHHHHHHHcCCcchHHHHHHHHHHHHHccCCCCc
Q 030464           79 VHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGLLSKRLEDGYYRGE  158 (177)
Q Consensus        79 ~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~dLlr~el~~~s~lgk~i~~~l~~G~~Ipdeli~~Ll~~~L~~~~~~~~  158 (177)
                      |+|+|+|||||||+|+|+.|+++||++|||+||++|+++..++++|+.++.++.+|++|||+++.+++++++.+     .
T Consensus         1 M~Iil~GpPGsGKgTqa~~La~~~g~~~istGdllR~~i~~~t~lg~~~~~~~~~G~lvpd~iv~~lv~~~l~~-----~   75 (206)
T 3sr0_A            1 MILVFLGPPGAGKGTQAKRLAKEKGFVHISTGDILREAVQKGTPLGKKAKEYMERGELVPDDLIIALIEEVFPK-----H   75 (206)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHHTCHHHHHHHHHHHHTCCCCHHHHHHHHHHHCCS-----S
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHCCeEEcHHHHHHHHHHhcChhhhhHHHHHhcCCcCCHHHHHHHHHHhhcc-----C
Confidence            57999999999999999999999999999999999999999999999999999999999999999999999865     3


Q ss_pred             ceEEEeCCCCCHHHHHhc
Q 030464          159 IGFILDGLPRSRIQATIS  176 (177)
Q Consensus       159 ~G~ILDGfPrt~~QAe~L  176 (177)
                      .||||||||||..||+.|
T Consensus        76 ~~~ilDGfPRt~~Qa~~l   93 (206)
T 3sr0_A           76 GNVIFDGFPRTVKQAEAL   93 (206)
T ss_dssp             SCEEEESCCCSHHHHHHH
T ss_pred             CceEecCCchhHHHHHHH
Confidence            589999999999999976

>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}

Probab=99.91  E-value=9.5e-25  Score=181.07  Aligned_cols=97  Identities=25%  Similarity=0.518  Sum_probs=91.5

Q ss_pred             CeEEEEEcCCCCCchHHHHHHHHHhCCCeeeCchhhhhccCCCCchHHHHHHHHHcCCcchHHHHHHHHHHHHHccCCCC
Q 030464           78 GVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGLLSKRLEDGYYRG  157 (177)
Q Consensus        78 ~~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~dLlr~el~~~s~lgk~i~~~l~~G~~Ipdeli~~Ll~~~L~~~~~~~  157 (177)
                      .++..|+|+|||||||+|+.|++++|++||++++++|+++...+++|+.+++++.+|+.+|++++.++++++|.+.++  
T Consensus         8 ~~~~~~~G~pGsGKsT~a~~L~~~~g~~~is~gdllR~~~~~~t~lG~~i~~~~~~G~lvpdei~~~ll~~~l~~~~~--   85 (230)
T 3gmt_A            8 HMRLILLGAPGAGKGTQANFIKEKFGIPQISTGDMLRAAVKAGTPLGVEAKTYMDEGKLVPDSLIIGLVKERLKEADC--   85 (230)
T ss_dssp             -CEEEEECCTTSCHHHHHHHHHHHHTCCEECHHHHHHHHHHTTCHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHSGGG--
T ss_pred             ccceeeECCCCCCHHHHHHHHHHHhCCCeeechHHHHHhccCCChHHHHHHHHHhhccccccHHHHHHHHHHHhCccc--
Confidence            468899999999999999999999999999999999999999999999999999999999999999999999998775  


Q ss_pred             cceEEEeCCCCCHHHHHhc
Q 030464          158 EIGFILDGLPRSRIQATIS  176 (177)
Q Consensus       158 ~~G~ILDGfPrt~~QAe~L  176 (177)
                      .+||||||||||..||+.|
T Consensus        86 ~~g~ILDGfPRt~~Qa~~L  104 (230)
T 3gmt_A           86 ANGYLFDGFPRTIAQADAM  104 (230)
T ss_dssp             TTCEEEESCCCSHHHHHHH
T ss_pred             CCCeEecCCCCcHHHHHHH
Confidence            5799999999999999875

>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}

Probab=99.85  E-value=3.5e-21  Score=158.26  Aligned_cols=99  Identities=26%  Similarity=0.442  Sum_probs=92.8

Q ss_pred             CCCeEEEEEcCCCCCchHHHHHHHHHhCCCeeeCchhhhhccCCCCchHHHHHHHHHcCCcchHHHHHHHHHHHHHccCC
Q 030464           76 RRGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGLLSKRLEDGYY  155 (177)
Q Consensus        76 ~~~~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~dLlr~el~~~s~lgk~i~~~l~~G~~Ipdeli~~Ll~~~L~~~~~  155 (177)
                      .++++|+|+|+|||||||+|+.|++++|++|+++++++|+++..++++++.+++++.+|..+|++++..++..++....+
T Consensus        27 ~~~~~I~l~G~~GsGKsT~a~~L~~~~g~~~is~~~~~r~~~~~~~~~g~~i~~~~~~g~~~~~~~~~~~~~~~l~~~~~  106 (243)
T 3tlx_A           27 KPDGRYIFLGAPGSGKGTQSLNLKKSHCYCHLSTGDLLREAAEKKTELGLKIKNIINEGKLVDDQMVLSLVDEKLKTPQC  106 (243)
T ss_dssp             SCCEEEEEECCTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHTTSSSHHHHHHHHHHHTTCCCCHHHHHHHHHHHTTSGGG
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHhCCeEEecHHHHHHHHhccchHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcccc
Confidence            47889999999999999999999999999999999999999999999999999999999999999999999999987653


Q ss_pred             CCcceEEEeCCCCCHHHHHhc
Q 030464          156 RGEIGFILDGLPRSRIQATIS  176 (177)
Q Consensus       156 ~~~~G~ILDGfPrt~~QAe~L  176 (177)
                        ..||||||||++..|++.|
T Consensus       107 --~~~~ildg~p~~~~q~~~l  125 (243)
T 3tlx_A          107 --KKGFILDGYPRNVKQAEDL  125 (243)
T ss_dssp             --SSEEEEESCCCSHHHHHHH
T ss_pred             --cCCEEecCCCCcHHHHHHH
Confidence              6899999999999999864

>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*

Probab=99.81  E-value=4.5e-20  Score=149.76  Aligned_cols=101  Identities=31%  Similarity=0.505  Sum_probs=90.4

Q ss_pred             ccCCCeEEEEEcCCCCCchHHHHHHHHHhCCCeeeCchhhhhccCCCCchHHHHHHHHHcCCcchHHHHHHHHHHHHHcc
Q 030464           74 ERRRGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGLLSKRLEDG  153 (177)
Q Consensus        74 ~~~~~~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~dLlr~el~~~s~lgk~i~~~l~~G~~Ipdeli~~Ll~~~L~~~  153 (177)
                      .+.++++|+|+|+|||||||+|+.|++.+++.++++++++++++...+++++.+++++..|..++++++.+++..++...
T Consensus        12 ~~~~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~d~li~~~~~~~~~~g~~i~~~~~~g~~~~~~~~~~~i~~~l~~~   91 (233)
T 1ak2_A           12 ESPKGVRAVLLGPPGAGKGTQAPKLAKNFCVCHLATGDMLRAMVASGSELGKKLKATMDAGKLVSDEMVLELIEKNLETP   91 (233)
T ss_dssp             --CCCCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHTSG
T ss_pred             CCCCCeEEEEECCCCCCHHHHHHHHHHHhCCceecHHHHHHHHHHcCChhHHHHHHHHHCCCcCCHHHHHHHHHHHHhcc
Confidence            34567899999999999999999999999999999999999988778889999999999999999999999999999876


Q ss_pred             CCCCcceEEEeCCCCCHHHHHhc
Q 030464          154 YYRGEIGFILDGLPRSRIQATIS  176 (177)
Q Consensus       154 ~~~~~~G~ILDGfPrt~~QAe~L  176 (177)
                      .+  ..|||+||||++..|++.|
T Consensus        92 ~~--~~g~ildg~~~~~~~~~~l  112 (233)
T 1ak2_A           92 PC--KNGFLLDGFPRTVRQAEML  112 (233)
T ss_dssp             GG--TTCEEEESCCCSHHHHHHH
T ss_pred             cc--cCcEEEeCCCCCHHHHHHH
Confidence            53  5799999999999988754

>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}

Probab=99.81  E-value=4.4e-20  Score=148.31  Aligned_cols=98  Identities=23%  Similarity=0.462  Sum_probs=87.4

Q ss_pred             CCeEEEEEcCCCCCchHHHHHHHHHhCCCeeeCchhhhhccCCCCchHHHHHHHHHcCCcchHHHHHHHHHHHHHccCCC
Q 030464           77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGLLSKRLEDGYYR  156 (177)
Q Consensus        77 ~~~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~dLlr~el~~~s~lgk~i~~~l~~G~~Ipdeli~~Ll~~~L~~~~~~  156 (177)
                      +++.|+|+|+|||||||+|+.|++.+|++|+++++++++.....+++++.+++.+.+|+.+|++++.+++..++....  
T Consensus         4 ~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~d~li~~~~~~~t~~g~~i~~~~~~g~~~~~~~~~~~i~~~l~~~~--   81 (217)
T 3be4_A            4 KKHNLILIGAPGSGKGTQCEFIKKEYGLAHLSTGDMLREAIKNGTKIGLEAKSIIESGNFVGDEIVLGLVKEKFDLGV--   81 (217)
T ss_dssp             GCCEEEEEECTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHTC--CCHHHHHHHHHTCCCCHHHHHHHHHHHHHTTT--
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHHhCceEEehhHHHHHHHHcCCHHHHHHHHHHHCCCcCCHHHHHHHHHHHHhccc--
Confidence            567899999999999999999999999999999999999888888899999999999999999999999999888754  


Q ss_pred             CcceEEEeCCCCCHHHHHhc
Q 030464          157 GEIGFILDGLPRSRIQATIS  176 (177)
Q Consensus       157 ~~~G~ILDGfPrt~~QAe~L  176 (177)
                      ...|||+||||++..|++.|
T Consensus        82 ~~~~~i~dg~~~~~~~~~~l  101 (217)
T 3be4_A           82 CVNGFVLDGFPRTIPQAEGL  101 (217)
T ss_dssp             TTTCEEEESCCCSHHHHHHH
T ss_pred             cCCCEEEeCCCCCHHHHHHH
Confidence            36799999999998888754

>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*

Probab=99.81  E-value=6.6e-20  Score=146.09  Aligned_cols=96  Identities=27%  Similarity=0.519  Sum_probs=89.3

Q ss_pred             eEEEEEcCCCCCchHHHHHHHHHhCCCeeeCchhhhhccCCCCchHHHHHHHHHcCCcchHHHHHHHHHHHHHccCCCCc
Q 030464           79 VHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGLLSKRLEDGYYRGE  158 (177)
Q Consensus        79 ~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~dLlr~el~~~s~lgk~i~~~l~~G~~Ipdeli~~Ll~~~L~~~~~~~~  158 (177)
                      ++|+|+|+|||||||+|+.|++.+|++++++++++++.+...++.++.+++.+..|..+|++++..++.+++....+  .
T Consensus         1 m~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~d~~~r~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~--~   78 (216)
T 3dl0_A            1 MNLVLMGLPGAGKGTQGERIVEKYGIPHISTGDMFRAAMKEETPLGLEAKSYIDKGELVPDEVTIGIVKERLGKDDC--E   78 (216)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHSSCCEEEHHHHHHHHHHTTCHHHHHHHHHHTTTCCCCHHHHHHHHHHHHTSGGG--T
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHhCCcEEeHHHHHHHHHhcCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcccc--c
Confidence            47999999999999999999999999999999999999999999999999999999999999999999999987653  6


Q ss_pred             ceEEEeCCCCCHHHHHhc
Q 030464          159 IGFILDGLPRSRIQATIS  176 (177)
Q Consensus       159 ~G~ILDGfPrt~~QAe~L  176 (177)
                      .+|||||||++..|++.+
T Consensus        79 ~~~ildg~p~~~~~~~~~   96 (216)
T 3dl0_A           79 RGFLLDGFPRTVAQAEAL   96 (216)
T ss_dssp             TCEEEESCCCSHHHHHHH
T ss_pred             CCEEEeCCCCCHHHHHHH
Confidence            799999999999998764

>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*

Probab=99.80  E-value=1.4e-19  Score=145.10  Aligned_cols=98  Identities=26%  Similarity=0.459  Sum_probs=88.1

Q ss_pred             CCCeEEEEEcCCCCCchHHHHHHHHHhCCCeeeCchhhhhccCCCCchHHHHHHHHHcCCcchHHHHHHHHHHHHH-ccC
Q 030464           76 RRGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGLLSKRLE-DGY  154 (177)
Q Consensus        76 ~~~~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~dLlr~el~~~s~lgk~i~~~l~~G~~Ipdeli~~Ll~~~L~-~~~  154 (177)
                      .+++.|+|+|+|||||||+|+.|++.++++++++++++++.+...+++++.+++.+..|..+|++++..++.+++. ...
T Consensus         2 ~~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~d~~~~~~~~~~~~~g~~i~~~~~~g~~~~~~~~~~~l~~~l~~~~~   81 (220)
T 1aky_A            2 SESIRMVLIGPPGAGKGTQAPNLQERFHAAHLATGDMLRSQIAKGTQLGLEAKKIMDQGGLVSDDIMVNMIKDELTNNPA   81 (220)
T ss_dssp             -CCCEEEEECCTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHTTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHCGG
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHcCceEEehhHHHHHHHHcCChHHHHHHHHHHCCCcCCHHHHHHHHHHHHHhccc
Confidence            3568899999999999999999999999999999999999888888999999999999999999999999999887 433


Q ss_pred             CCCcceEEEeCCCCCHHHHHh
Q 030464          155 YRGEIGFILDGLPRSRIQATI  175 (177)
Q Consensus       155 ~~~~~G~ILDGfPrt~~QAe~  175 (177)
                        ...|||+||||++..|++.
T Consensus        82 --~~~~~i~dg~~~~~~~~~~  100 (220)
T 1aky_A           82 --CKNGFILDGFPRTIPQAEK  100 (220)
T ss_dssp             --GGSCEEEESCCCSHHHHHH
T ss_pred             --cCCCeEEeCCCCCHHHHHH
Confidence              3579999999999988764

>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}

Probab=99.80  E-value=1.3e-19  Score=144.19  Aligned_cols=96  Identities=27%  Similarity=0.507  Sum_probs=89.2

Q ss_pred             eEEEEEcCCCCCchHHHHHHHHHhCCCeeeCchhhhhccCCCCchHHHHHHHHHcCCcchHHHHHHHHHHHHHccCCCCc
Q 030464           79 VHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGLLSKRLEDGYYRGE  158 (177)
Q Consensus        79 ~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~dLlr~el~~~s~lgk~i~~~l~~G~~Ipdeli~~Ll~~~L~~~~~~~~  158 (177)
                      ++|+|+|+|||||||+|+.|++.+|++++++++++++.+...++.++.+++.+..|..+|++++.+++.+++....+  .
T Consensus         1 m~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~d~~~r~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~--~   78 (216)
T 3fb4_A            1 MNIVLMGLPGAGKGTQAEQIIEKYEIPHISTGDMFRAAIKNGTELGLKAKSFMDQGNLVPDEVTIGIVHERLSKDDC--Q   78 (216)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHHCCCEEEHHHHHHHHHHTTCHHHHHHHHHHHHTCCCCHHHHHHHHHHHHTSGGG--T
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHhCCcEeeHHHHHHHHHhcCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcccC--C
Confidence            47999999999999999999999999999999999999999999999999999999999999999999999987653  5


Q ss_pred             ceEEEeCCCCCHHHHHhc
Q 030464          159 IGFILDGLPRSRIQATIS  176 (177)
Q Consensus       159 ~G~ILDGfPrt~~QAe~L  176 (177)
                      .+|||||||++..|++.|
T Consensus        79 ~~~ildg~p~~~~~~~~l   96 (216)
T 3fb4_A           79 KGFLLDGFPRTVAQADAL   96 (216)
T ss_dssp             TCEEEESCCCSHHHHHHH
T ss_pred             CcEEEeCCCCCHHHHHHH
Confidence            799999999999998754

>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*

Probab=99.78  E-value=1.6e-19  Score=144.33  Aligned_cols=96  Identities=27%  Similarity=0.518  Sum_probs=86.8

Q ss_pred             eEEEEEcCCCCCchHHHHHHHHHhCCCeeeCchhhhhccCCCCchHHHHHHHHHcCCcchHHHHHHHHHHHHHccCCCCc
Q 030464           79 VHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGLLSKRLEDGYYRGE  158 (177)
Q Consensus        79 ~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~dLlr~el~~~s~lgk~i~~~l~~G~~Ipdeli~~Ll~~~L~~~~~~~~  158 (177)
                      ++|+|+|+|||||||+|+.|++.+|++++++++++++.+...+++++.+++.+..|..+|++++.+++..++.+..+  .
T Consensus         1 m~I~l~G~~GsGKsT~a~~L~~~~g~~~i~~d~~~r~~~~~~~~~g~~i~~~~~~g~~~~~~~~~~~i~~~l~~~~~--~   78 (214)
T 1e4v_A            1 MRIILLGAPVAGKGTQAQFIMEKYGIPQISTGDMLRAAVKSGSELGKQAKDIMDAGKLVTDELVIALVKERIAQEDC--R   78 (214)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHHHHCCCEEEHHHHHHHHHHHTCTTTGGGHHHHHHTCCCCHHHHHHHHHHHHTSGGG--G
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHhCCeEEeHHHHHHHHHHcCChHHHHHHHHHHCCCcCCHHHHHHHHHHHHhcccc--C
Confidence            47999999999999999999999999999999999998777788888899999999999999999999999887642  5


Q ss_pred             ceEEEeCCCCCHHHHHhc
Q 030464          159 IGFILDGLPRSRIQATIS  176 (177)
Q Consensus       159 ~G~ILDGfPrt~~QAe~L  176 (177)
                      .|||+||||++..|++.|
T Consensus        79 ~~~i~dg~~~~~~~~~~l   96 (214)
T 1e4v_A           79 NGFLLDGFPRTIPQADAM   96 (214)
T ss_dssp             GCEEEESCCCSHHHHHHH
T ss_pred             CCEEEeCCCCCHHHHHHH
Confidence            799999999999988754

>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1

Probab=99.77  E-value=3.7e-19  Score=142.70  Aligned_cols=99  Identities=24%  Similarity=0.428  Sum_probs=87.6

Q ss_pred             CCeEEEEEcCCCCCchHHHHHHHHHhCCCeeeCchhhhhccCCCCchHHHHHHHHHcCCcchHHHHHHHHHHHHHccCCC
Q 030464           77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGLLSKRLEDGYYR  156 (177)
Q Consensus        77 ~~~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~dLlr~el~~~s~lgk~i~~~l~~G~~Ipdeli~~Ll~~~L~~~~~~  156 (177)
                      +++.|+|+|+|||||||+|+.|++.+++.+++++++++.....++..|+.+++.+.+|+.+|++.+..++.+++....+ 
T Consensus         4 ~~~~I~l~G~~GsGKsT~~~~La~~l~~~~i~~d~~~~~~~~~~~~~g~~i~~~~~~g~~~~~~~~~~~~~~~~~~~~~-   82 (222)
T 1zak_A            4 DPLKVMISGAPASGKGTQCELIKTKYQLAHISAGDLLRAEIAAGSENGKRAKEFMEKGQLVPDEIVVNMVKERLRQPDA-   82 (222)
T ss_dssp             CSCCEEEEESTTSSHHHHHHHHHHHHCCEECCHHHHHHHHHHHTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHSHHH-
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHhCCceecHHHHHHHHHHcCCchhHHHHHHHHcCCcCCHHHHHHHHHHHHhhccc-
Confidence            5678999999999999999999999999999999999987777788999999999999999999999988888876543 


Q ss_pred             CcceEEEeCCCCCHHHHHhc
Q 030464          157 GEIGFILDGLPRSRIQATIS  176 (177)
Q Consensus       157 ~~~G~ILDGfPrt~~QAe~L  176 (177)
                      ...||||||||++..|++.|
T Consensus        83 ~~~~~vidg~~~~~~~~~~l  102 (222)
T 1zak_A           83 QENGWLLDGYPRSYSQAMAL  102 (222)
T ss_dssp             HHTCEEEESCCCSHHHHHHH
T ss_pred             cCCcEEEECCCCCHHHHHHH
Confidence            24699999999999887654

>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*

Probab=99.76  E-value=1.7e-18  Score=139.92  Aligned_cols=95  Identities=23%  Similarity=0.430  Sum_probs=86.4

Q ss_pred             eEEEEEcCCCCCchHHHHHHHHHhCCCeeeCchhhhhccCCCCchHHHHHHHHHcCCcchHHHHHHHHHHHHHccCCCCc
Q 030464           79 VHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGLLSKRLEDGYYRGE  158 (177)
Q Consensus        79 ~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~dLlr~el~~~s~lgk~i~~~l~~G~~Ipdeli~~Ll~~~L~~~~~~~~  158 (177)
                      +.|+|+|+|||||||+|+.|++.+|++++++++++++.+...++.++.+++.+..|..+|++++.+++..++....   .
T Consensus         1 m~I~l~G~~GsGKsT~a~~La~~lg~~~i~~dd~~r~~~~~~~~~g~~i~~~~~~g~~~~~~~~~~~i~~~l~~~~---g   77 (223)
T 2xb4_A            1 MNILIFGPNGSGKGTQGNLVKDKYSLAHIESGGIFREHIGGGTELGKKAKEFIDRGDLVPDDITIPMVLETLESKG---K   77 (223)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHHTCEEEEHHHHHHHHTTTTCHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHC---T
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHhCCeEEchHHHHHHHHHcCCHHHHHHHHHHHcCCcCcHHHHHHHHHHHHhccc---C
Confidence            4699999999999999999999999999999999999888888999999999999999999999999999887642   4


Q ss_pred             ceEEEeCCCCCHHHHHhc
Q 030464          159 IGFILDGLPRSRIQATIS  176 (177)
Q Consensus       159 ~G~ILDGfPrt~~QAe~L  176 (177)
                      .+||+||||++..|++.|
T Consensus        78 ~~vIlDg~~~~~~~~~~l   95 (223)
T 2xb4_A           78 DGWLLDGFPRNTVQAQKL   95 (223)
T ss_dssp             TCEEEESCCCSHHHHHHH
T ss_pred             CeEEEeCCcCCHHHHHHH
Confidence            699999999998887754

>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A

Probab=99.76  E-value=2.2e-18  Score=136.06  Aligned_cols=99  Identities=30%  Similarity=0.471  Sum_probs=87.9

Q ss_pred             cCCCeEEEEEcCCCCCchHHHHHHHHHhCCCeeeCchhhhhccCCCCchHHHHHHHHHcCCcchHHHHHHHHHHHHHccC
Q 030464           75 RRRGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGLLSKRLEDGY  154 (177)
Q Consensus        75 ~~~~~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~dLlr~el~~~s~lgk~i~~~l~~G~~Ipdeli~~Ll~~~L~~~~  154 (177)
                      +.+++.|+|+|+|||||||+|+.|++.+|++++++++++++.+...+..++.+++.+..|..++++.+..++.+++....
T Consensus        17 ~~~~~~I~l~G~~GsGKST~a~~La~~l~~~~i~~d~~~r~~~~~~~~~g~~i~~~~~~g~~~~~~~~~~~~~~~~~~~~   96 (201)
T 2cdn_A           17 RGSHMRVLLLGPPGAGKGTQAVKLAEKLGIPQISTGELFRRNIEEGTKLGVEAKRYLDAGDLVPSDLTNELVDDRLNNPD   96 (201)
T ss_dssp             CCSCCEEEEECCTTSSHHHHHHHHHHHHTCCEEEHHHHHHHHHHTTCHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTSGG
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHhCCcEEehhHHHHHHHHcCChHHHHHHHHHHcCCcccHHHHHHHHHHHHhccc
Confidence            46778999999999999999999999999999999999999777788899999999999999999999999988877643


Q ss_pred             CCCcceEEEeCCCCCHHHHHh
Q 030464          155 YRGEIGFILDGLPRSRIQATI  175 (177)
Q Consensus       155 ~~~~~G~ILDGfPrt~~QAe~  175 (177)
                        ...+||+||+|++..|++.
T Consensus        97 --~~~~vIldg~~~~~~~~~~  115 (201)
T 2cdn_A           97 --AANGFILDGYPRSVEQAKA  115 (201)
T ss_dssp             --GTTCEEEESCCCSHHHHHH
T ss_pred             --CCCeEEEECCCCCHHHHHH
Confidence              3578999999999887754

>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*

Probab=99.73  E-value=5.6e-18  Score=136.43  Aligned_cols=98  Identities=18%  Similarity=0.368  Sum_probs=86.0

Q ss_pred             CCCeEEEEEcCCCCCchHHHHHHHHHhCCCeeeCchhhhhccCCCCchHHHHHHHHHcCCcchHHHHHHHHHHHHHccCC
Q 030464           76 RRGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGLLSKRLEDGYY  155 (177)
Q Consensus        76 ~~~~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~dLlr~el~~~s~lgk~i~~~l~~G~~Ipdeli~~Ll~~~L~~~~~  155 (177)
                      .+++.|+|+|+|||||||+|+.|++.+|+++++++++++.....++++|+.+++++..|..++++....++.+++.+.  
T Consensus         5 ~~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~d~~~~~~~~~~~~~g~~i~~~~~~g~~~~~~~~~~~~~~~l~~~--   82 (227)
T 1zd8_A            5 ARLLRAVIMGAPGSGKGTVSSRITTHFELKHLSSGDLLRDNMLRGTEIGVLAKAFIDQGKLIPDDVMTRLALHELKNL--   82 (227)
T ss_dssp             --CCEEEEEECTTSSHHHHHHHHHHHSSSEEEEHHHHHHHHHHHTCHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHTC--
T ss_pred             ccCcEEEEECCCCCCHHHHHHHHHHHcCCeEEechHHHHHhhhcCChHHHHHHHHHHcCCcCCHHHHHHHHHHHHhcc--
Confidence            466889999999999999999999999999999999999887777888999999999999999998888888888764  


Q ss_pred             CCcceEEEeCCCCCHHHHHhc
Q 030464          156 RGEIGFILDGLPRSRIQATIS  176 (177)
Q Consensus       156 ~~~~G~ILDGfPrt~~QAe~L  176 (177)
                       ...+||+||||++..|++.|
T Consensus        83 -~~~~~vid~~~~~~~~~~~l  102 (227)
T 1zd8_A           83 -TQYSWLLDGFPRTLPQAEAL  102 (227)
T ss_dssp             -TTSCEEEESCCCSHHHHHHH
T ss_pred             -cCCCEEEeCCCCCHHHHHHH
Confidence             24689999999999987643

>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A

Probab=99.73  E-value=1.2e-17  Score=130.00  Aligned_cols=99  Identities=19%  Similarity=0.366  Sum_probs=86.6

Q ss_pred             CCCeEEEEEcCCCCCchHHHHHHHHHhCCCeeeCchhhhhccCCCCchHHHHHHHHHcCCcchHHHHHHHHHHHHHccCC
Q 030464           76 RRGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGLLSKRLEDGYY  155 (177)
Q Consensus        76 ~~~~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~dLlr~el~~~s~lgk~i~~~l~~G~~Ipdeli~~Ll~~~L~~~~~  155 (177)
                      .+++.|+|+|+|||||||+|+.|++.+|+++++++++++......+..++.+++.+..|+.++++++..++.+.+.....
T Consensus         7 ~~~~~I~l~G~~GsGKsT~~~~La~~l~~~~i~~d~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~i~~~~~   86 (196)
T 2c95_A            7 KKTNIIFVVGGPGSGKGTQCEKIVQKYGYTHLSTGDLLRSEVSSGSARGKKLSEIMEKGQLVPLETVLDMLRDAMVAKVN   86 (196)
T ss_dssp             TTSCEEEEEECTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHTTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHTT
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHHHhCCeEEcHHHHHHHHHHcCChHHHHHHHHHHcCCcCCHHHHHHHHHHHHHhccc
Confidence            46678999999999999999999999999999999999987777788899999999999999999888888887775432


Q ss_pred             CCcceEEEeCCCCCHHHHHh
Q 030464          156 RGEIGFILDGLPRSRIQATI  175 (177)
Q Consensus       156 ~~~~G~ILDGfPrt~~QAe~  175 (177)
                       ...++|+||||++..|++.
T Consensus        87 -~~~~vi~d~~~~~~~~~~~  105 (196)
T 2c95_A           87 -TSKGFLIDGYPREVQQGEE  105 (196)
T ss_dssp             -TCSCEEEESCCCSHHHHHH
T ss_pred             -cCCcEEEeCCCCCHHHHHH
Confidence             3579999999999988754

>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*

Probab=99.72  E-value=1.4e-17  Score=131.15  Aligned_cols=101  Identities=25%  Similarity=0.367  Sum_probs=84.0

Q ss_pred             cCCCeEEEEEcCCCCCchHHHHHHHHHhCCCeeeCchhhhhcc-CCCCchHHHHHHHHHcCCcchHHHHHHHHHHHHHcc
Q 030464           75 RRRGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDL-SPRSSLHKQIANAVNRGEVVSEDIIFGLLSKRLEDG  153 (177)
Q Consensus        75 ~~~~~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~dLlr~el-~~~s~lgk~i~~~l~~G~~Ipdeli~~Ll~~~L~~~  153 (177)
                      +.+++.|+|+|+|||||||+|+.|++.+|++++++++++++.. ...+.+++.+++.+..|...|+++...++.+.+...
T Consensus        12 ~~~~~~I~l~G~~GsGKsT~~~~L~~~~g~~~i~~d~~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~l~~~i~~~   91 (203)
T 1ukz_A           12 PDQVSVIFVLGGPGAGKGTQCEKLVKDYSFVHLSAGDLLRAEQGRAGSQYGELIKNCIKEGQIVPQEITLALLRNAISDN   91 (203)
T ss_dssp             TTTCEEEEEECSTTSSHHHHHHHHHHHSSCEEEEHHHHHHHHHHSTTCSCHHHHHHHHHTTCCCCHHHHHHHHHHHHHHH
T ss_pred             CCCCcEEEEECCCCCCHHHHHHHHHHHcCceEEeHHHHHHHHHhccCCHHHHHHHHHHHcCCcCCHHHHHHHHHHHHHhh
Confidence            4567789999999999999999999999999999999999864 356778888999999999999988888887776543


Q ss_pred             CCCCcceEEEeCCCCCHHHHHh
Q 030464          154 YYRGEIGFILDGLPRSRIQATI  175 (177)
Q Consensus       154 ~~~~~~G~ILDGfPrt~~QAe~  175 (177)
                      ...+..+||+||+|++.+++..
T Consensus        92 l~~g~~~~i~dg~~~~~~~~~~  113 (203)
T 1ukz_A           92 VKANKHKFLIDGFPRKMDQAIS  113 (203)
T ss_dssp             HHTTCCEEEEETCCCSHHHHHH
T ss_pred             hccCCCeEEEeCCCCCHHHHHH
Confidence            2112368999999999988764

>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}

Probab=99.70  E-value=3.4e-17  Score=127.61  Aligned_cols=98  Identities=26%  Similarity=0.411  Sum_probs=85.1

Q ss_pred             CCeEEEEEcCCCCCchHHHHHHHHHhCCCeeeCchhhhhccCCCCchHHHHHHHHHcCCcchHHHHHHHHHHHHHccCCC
Q 030464           77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGLLSKRLEDGYYR  156 (177)
Q Consensus        77 ~~~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~dLlr~el~~~s~lgk~i~~~l~~G~~Ipdeli~~Ll~~~L~~~~~~  156 (177)
                      +++.|+|+|+|||||||+|+.|++.+|+++++++++++.+....++.++.+++.+..|..++++.+..++.+.+..... 
T Consensus        11 ~~~~I~l~G~~GsGKsT~a~~L~~~l~~~~i~~d~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~i~~~~~-   89 (199)
T 2bwj_A           11 KCKIIFIIGGPGSGKGTQCEKLVEKYGFTHLSTGELLREELASESERSKLIRDIMERGDLVPSGIVLELLKEAMVASLG-   89 (199)
T ss_dssp             HSCEEEEEECTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHTT-
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHhCCeEEcHHHHHHHHHHhCCHHHHHHHHHHHcCCcCCHHHHHHHHHHHHhcccc-
Confidence            4578999999999999999999999999999999999988766778888999999999999999988888887765432 


Q ss_pred             CcceEEEeCCCCCHHHHHh
Q 030464          157 GEIGFILDGLPRSRIQATI  175 (177)
Q Consensus       157 ~~~G~ILDGfPrt~~QAe~  175 (177)
                      ...+||+||+|++..|++.
T Consensus        90 ~~~~vi~dg~~~~~~~~~~  108 (199)
T 2bwj_A           90 DTRGFLIDGYPREVKQGEE  108 (199)
T ss_dssp             SCSCEEEETCCSSHHHHHH
T ss_pred             cCccEEEeCCCCCHHHHHH
Confidence            3578999999999888654

>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*

Probab=99.69  E-value=1.1e-16  Score=123.48  Aligned_cols=97  Identities=20%  Similarity=0.301  Sum_probs=85.4

Q ss_pred             CCeEEEEEcCCCCCchHHHHHHHHHhCCCeeeCchhhhhccCCCCchHHHHHHHHHcCCcchHHHHHHHHHHHHHccCCC
Q 030464           77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGLLSKRLEDGYYR  156 (177)
Q Consensus        77 ~~~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~dLlr~el~~~s~lgk~i~~~l~~G~~Ipdeli~~Ll~~~L~~~~~~  156 (177)
                      .+..|+|+|+|||||||+|+.|++.+|+++++++++++++....++.++.+.+.+..|...++++...++.+.+...   
T Consensus         5 ~~~~I~l~G~~GsGKsT~~~~L~~~l~~~~i~~d~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~l~~~i~~~---   81 (194)
T 1qf9_A            5 KPNVVFVLGGPGSGKGTQCANIVRDFGWVHLSAGDLLRQEQQSGSKDGEMIATMIKNGEIVPSIVTVKLLKNAIDAN---   81 (194)
T ss_dssp             CCEEEEEEESTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHTTCTTHHHHHHHHHTTCCCCHHHHHHHHHHHHHTS---
T ss_pred             cCcEEEEECCCCCCHHHHHHHHHHHhCCeEeeHHHHHHHHHhcCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhc---
Confidence            35689999999999999999999999999999999999887677888999999999999999999888988887764   


Q ss_pred             CcceEEEeCCCCCHHHHHhc
Q 030464          157 GEIGFILDGLPRSRIQATIS  176 (177)
Q Consensus       157 ~~~G~ILDGfPrt~~QAe~L  176 (177)
                      ...++|+||+|++..+.+.+
T Consensus        82 ~~~~vi~d~~~~~~~~~~~~  101 (194)
T 1qf9_A           82 QGKNFLVDGFPRNEENNNSW  101 (194)
T ss_dssp             TTCCEEEETCCCSHHHHHHH
T ss_pred             CCCCEEEeCcCCCHHHHHHH
Confidence            25789999999998877543

>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}

Probab=99.68  E-value=7.3e-17  Score=124.94  Aligned_cols=93  Identities=29%  Similarity=0.503  Sum_probs=80.9

Q ss_pred             CCCeEEEEEcCCCCCchHHHHHHHHHhCCCeeeCchhhhhccCCCCchHHHHHHHHHcCCcchHHHHHHHHHHHHHccCC
Q 030464           76 RRGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGLLSKRLEDGYY  155 (177)
Q Consensus        76 ~~~~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~dLlr~el~~~s~lgk~i~~~l~~G~~Ipdeli~~Ll~~~L~~~~~  155 (177)
                      .+++.|+|+|+|||||||+|+.|++.+|++++++++++++.+...++.++.+++.+.+|..++++.+..++.+.+.    
T Consensus         2 ~~g~~I~l~G~~GsGKST~~~~La~~l~~~~i~~d~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~l~----   77 (186)
T 3cm0_A            2 DVGQAVIFLGPPGAGKGTQASRLAQELGFKKLSTGDILRDHVARGTPLGERVRPIMERGDLVPDDLILELIREELA----   77 (186)
T ss_dssp             -CEEEEEEECCTTSCHHHHHHHHHHHHTCEEECHHHHHHHHHHTTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHCC----
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHhCCeEecHHHHHHHHHHcCChHHHHHHHHHHcCCcCCHHHHHHHHHHHhc----
Confidence            3567899999999999999999999999999999999998877778889999999999999999988887776542    


Q ss_pred             CCcceEEEeCCCCCHHHHHh
Q 030464          156 RGEIGFILDGLPRSRIQATI  175 (177)
Q Consensus       156 ~~~~G~ILDGfPrt~~QAe~  175 (177)
                         .|+|+||+|++..|++.
T Consensus        78 ---~~~i~dg~~~~~~~~~~   94 (186)
T 3cm0_A           78 ---ERVIFDGFPRTLAQAEA   94 (186)
T ss_dssp             ---SEEEEESCCCSHHHHHH
T ss_pred             ---CCEEEeCCCCCHHHHHH
Confidence               35999999999887653

>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1

Probab=99.68  E-value=2.2e-16  Score=122.03  Aligned_cols=98  Identities=19%  Similarity=0.376  Sum_probs=79.7

Q ss_pred             CCeEEEEEcCCCCCchHHHHHHHHHhCCCeeeCchhhhhccC-CCCchHHHHHHHHHcCCcchHHHHHHHHHHHHHccC-
Q 030464           77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLS-PRSSLHKQIANAVNRGEVVSEDIIFGLLSKRLEDGY-  154 (177)
Q Consensus        77 ~~~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~dLlr~el~-~~s~lgk~i~~~l~~G~~Ipdeli~~Ll~~~L~~~~-  154 (177)
                      +++.|+|+|+|||||||+|+.|++.+|+++++.++++++... ..+.+++.+++.+..|..+++++...++...+.+.. 
T Consensus         2 ~~~~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~   81 (196)
T 1tev_A            2 KPLVVFVLGGPGAGKGTQCARIVEKYGYTHLSAGELLRDERKNPDSQYGELIEKYIKEGKIVPVEITISLLKREMDQTMA   81 (196)
T ss_dssp             -CEEEEEECCTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHCTTSTTHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHHhCCeEEeHHHHHHHHHhccCChHHHHHHHHHHCCCcCCHHHHHHHHHHHHHhhhc
Confidence            567899999999999999999999999999999999988664 456678888888999999998887777766554321 


Q ss_pred             -CCCcceEEEeCCCCCHHHHH
Q 030464          155 -YRGEIGFILDGLPRSRIQAT  174 (177)
Q Consensus       155 -~~~~~G~ILDGfPrt~~QAe  174 (177)
                       .....+||+||+|++..|.+
T Consensus        82 ~~~~~~~vi~dg~~~~~~~~~  102 (196)
T 1tev_A           82 ANAQKNKFLIDGFPRNQDNLQ  102 (196)
T ss_dssp             HCTTCCEEEEESCCCSHHHHH
T ss_pred             cccCCCeEEEeCCCCCHHHHH
Confidence             01256899999999988765

>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A

Probab=99.53  E-value=4.2e-14  Score=115.10  Aligned_cols=97  Identities=18%  Similarity=0.341  Sum_probs=81.2

Q ss_pred             CCeEEEEEcCCCCCchHHHHHHHHHhCCCeeeCchhhhhccCCCCchHHHHHHHHHcCCcchHHHHHHHHHHHHHccCCC
Q 030464           77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGLLSKRLEDGYYR  156 (177)
Q Consensus        77 ~~~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~dLlr~el~~~s~lgk~i~~~l~~G~~Ipdeli~~Ll~~~L~~~~~~  156 (177)
                      ++..|+|+|+|||||||+++.|++.+|+.+++.|++++........++..+...+.++..+|+..+.+.+...+...   
T Consensus        26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~~~~~G~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~v~~~l~~~l~~~---  102 (246)
T 2bbw_A           26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQHLSSGHFLRENIKASTEVGEMAKQYIEKSLLVPDHVITRLMMSELENR---  102 (246)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHHHCCCCEEHHHHHHHHHHTTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTC---
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHhCCeEecHHHHHHHHHhcCChHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhc---
Confidence            46789999999999999999999999999999999988765445667888888888899999988888887777653   


Q ss_pred             CcceEEEeCCCCCHHHHHhc
Q 030464          157 GEIGFILDGLPRSRIQATIS  176 (177)
Q Consensus       157 ~~~G~ILDGfPrt~~QAe~L  176 (177)
                      ...+||+||+|++..|++.+
T Consensus       103 ~~~~~il~g~~~~~~~~~~l  122 (246)
T 2bbw_A          103 RGQHWLLDGFPRTLGQAEAL  122 (246)
T ss_dssp             TTSCEEEESCCCSHHHHHHH
T ss_pred             CCCeEEEECCCCCHHHHHHH
Confidence            24689999999998776643

>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A

Probab=99.38  E-value=4.7e-13  Score=100.63  Aligned_cols=90  Identities=21%  Similarity=0.213  Sum_probs=63.4

Q ss_pred             eEEEEEcCCCCCchHHHHHHHHHhCCCeeeCchhhhhccCCC----CchHHHHHHHHHcCCcchHHHHHHHHHHHHHccC
Q 030464           79 VHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPR----SSLHKQIANAVNRGEVVSEDIIFGLLSKRLEDGY  154 (177)
Q Consensus        79 ~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~dLlr~el~~~----s~lgk~i~~~l~~G~~Ipdeli~~Ll~~~L~~~~  154 (177)
                      +.|+|+|+|||||||+|+.| +.+|++++++++++++.....    .............   .+++...+++.+.+... 
T Consensus         2 ~~I~l~G~~GsGKsT~a~~L-~~~g~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~-   76 (179)
T 3lw7_A            2 KVILITGMPGSGKSEFAKLL-KERGAKVIVMSDVVRKRYSIEAKPGERLMDFAKRLREI---YGDGVVARLCVEELGTS-   76 (179)
T ss_dssp             CEEEEECCTTSCHHHHHHHH-HHTTCEEEEHHHHHHHHHHHHC---CCHHHHHHHHHHH---HCTTHHHHHHHHHHCSC-
T ss_pred             cEEEEECCCCCCHHHHHHHH-HHCCCcEEEHhHHHHHHHHhcCCChhHHHHHHHHHHhh---CCHHHHHHHHHHHHHhc-
Confidence            57899999999999999999 999999999999999865322    2333333333332   12334455555555432 


Q ss_pred             CCCcceEEEeCCCCCHHHHHhc
Q 030464          155 YRGEIGFILDGLPRSRIQATIS  176 (177)
Q Consensus       155 ~~~~~G~ILDGfPrt~~QAe~L  176 (177)
                        ...+||+||+ ++..|.+.|
T Consensus        77 --~~~~vi~dg~-~~~~~~~~l   95 (179)
T 3lw7_A           77 --NHDLVVFDGV-RSLAEVEEF   95 (179)
T ss_dssp             --CCSCEEEECC-CCHHHHHHH
T ss_pred             --CCCeEEEeCC-CCHHHHHHH
Confidence              3578999999 988887654

>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1

Probab=99.25  E-value=3.1e-12  Score=97.54  Aligned_cols=93  Identities=15%  Similarity=0.093  Sum_probs=59.2

Q ss_pred             CeEEEEEcCCCCCchHHHHHHHH-HhCCCeeeCchhhhhccCCCCchHHHHHHHHHcCCcchHHHHHHHHHHHHHccCCC
Q 030464           78 GVHWAFIGSPRAKKHVYAEMLSK-LLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGLLSKRLEDGYYR  156 (177)
Q Consensus        78 ~~~IlIiGpPGSGKSTlA~~LAk-~lgl~~Is~~dLlr~el~~~s~lgk~i~~~l~~G~~Ipdeli~~Ll~~~L~~~~~~  156 (177)
                      +..|+|.|+|||||||+|+.|++ .+|+.+++. |.++..+...+. +. ...+...+.....+++.+++...+....  
T Consensus         2 ~~~I~i~G~~GsGKST~a~~L~~~~~~~~~i~~-d~~r~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~--   76 (181)
T 1ly1_A            2 KKIILTIGCPGSGKSTWAREFIAKNPGFYNINR-DDYRQSIMAHEE-RD-EYKYTKKKEGIVTGMQFDTAKSILYGGD--   76 (181)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHSTTEEEECH-HHHHHHHTTSCC-GG-GCCCCHHHHHHHHHHHHHHHHHHHTSCS--
T ss_pred             CeEEEEecCCCCCHHHHHHHHHhhcCCcEEecH-HHHHHHhhCCCc-cc-hhhhchhhhhHHHHHHHHHHHHHHhhcc--
Confidence            45789999999999999999999 689999997 556654433211 00 0000001112234455566666664312  


Q ss_pred             CcceEEEeCCCCCHHHHHh
Q 030464          157 GEIGFILDGLPRSRIQATI  175 (177)
Q Consensus       157 ~~~G~ILDGfPrt~~QAe~  175 (177)
                      ...++|+||++.+..+.+.
T Consensus        77 ~g~~vi~d~~~~~~~~~~~   95 (181)
T 1ly1_A           77 SVKGVIISDTNLNPERRLA   95 (181)
T ss_dssp             SCCEEEECSCCCSHHHHHH
T ss_pred             CCCeEEEeCCCCCHHHHHH
Confidence            3579999999998766543

>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*

Probab=99.12  E-value=4.5e-11  Score=93.78  Aligned_cols=91  Identities=16%  Similarity=0.212  Sum_probs=64.4

Q ss_pred             CCCeEEEEEcCCCCCchHHHHHHHHHhCCCeeeCchhhhhccCCCCchHHHHHHHHHcCCcchHHHHHHHHHH-------
Q 030464           76 RRGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGLLSK-------  148 (177)
Q Consensus        76 ~~~~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~dLlr~el~~~s~lgk~i~~~l~~G~~Ipdeli~~Ll~~-------  148 (177)
                      .+++.|+|+|+|||||||+|+.|++.++..++++ +++++. ...+..++.+++++..+..++++.+..+...       
T Consensus         8 ~~~~~I~l~G~~GsGKST~~~~L~~~l~~~~~~~-~~~~~~-~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (212)
T 2wwf_A            8 KKGKFIVFEGLDRSGKSTQSKLLVEYLKNNNVEV-KHLYFP-NRETGIGQIISKYLKMENSMSNETIHLLFSANRWEHMN   85 (212)
T ss_dssp             BCSCEEEEEESTTSSHHHHHHHHHHHHHHTTCCE-EEEESS-CTTSHHHHHHHHHHTTSSCCCHHHHHHHHHHHHHTTHH
T ss_pred             hcCCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcE-EEEecC-CCCCcHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHH
Confidence            3578899999999999999999999999888888 556643 3346778888888877777766544333321       


Q ss_pred             HHHccCCCCcceEEEeCCCCC
Q 030464          149 RLEDGYYRGEIGFILDGLPRS  169 (177)
Q Consensus       149 ~L~~~~~~~~~G~ILDGfPrt  169 (177)
                      .+...- .....+|+|+++.+
T Consensus        86 ~i~~~l-~~~~~vi~D~~~~~  105 (212)
T 2wwf_A           86 EIKSLL-LKGIWVVCDRYAYS  105 (212)
T ss_dssp             HHHHHH-HHTCEEEEECCHHH
T ss_pred             HHHHHH-hCCCEEEEecchhh
Confidence            111110 02358999999865

>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}

Probab=99.07  E-value=7.1e-10  Score=85.27  Aligned_cols=57  Identities=14%  Similarity=0.041  Sum_probs=46.2

Q ss_pred             eEEEEEcCCCCCchHHHHHHHHHh---CCCeeeCchhhhhccCCCCchHHHHHHHHHcCCcchHHH
Q 030464           79 VHWAFIGSPRAKKHVYAEMLSKLL---EVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDI  141 (177)
Q Consensus        79 ~~IlIiGpPGSGKSTlA~~LAk~l---gl~~Is~~dLlr~el~~~s~lgk~i~~~l~~G~~Ipdel  141 (177)
                      +.|+|+|+|||||||+|+.|++.+   |++++++++      ...+..++.+++.+..|...++..
T Consensus         1 ~~I~l~G~~GsGKsT~~~~L~~~l~~~g~~~i~~d~------~~~~~~~~~i~~~~~~g~~~~~~~   60 (195)
T 2pbr_A            1 MLIAFEGIDGSGKTTQAKKLYEYLKQKGYFVSLYRE------PGGTKVGEVLREILLTEELDERTE   60 (195)
T ss_dssp             CEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEES------SCSSHHHHHHHHHHHHSCCCHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeC------CCCCchHHHHHHHHcCCCCCHHHH
Confidence            468999999999999999999998   999999853      234567778888888887777643

>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A

Probab=99.06  E-value=7.2e-11  Score=97.95  Aligned_cols=93  Identities=15%  Similarity=0.110  Sum_probs=57.9

Q ss_pred             CeEEEEEcCCCCCchHHHHHHHHHh-CCCeeeCchhhhhccCCCCchHHHHHHHHHcCCcchHHHHHHHHHHHHHccCCC
Q 030464           78 GVHWAFIGSPRAKKHVYAEMLSKLL-EVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGLLSKRLEDGYYR  156 (177)
Q Consensus        78 ~~~IlIiGpPGSGKSTlA~~LAk~l-gl~~Is~~dLlr~el~~~s~lgk~i~~~l~~G~~Ipdeli~~Ll~~~L~~~~~~  156 (177)
                      +..|+|+|+|||||||+|+.|++++ |+.+|+.+ .++..+...+. +.. ..+...++..+.+++.+++...+.+..  
T Consensus         2 ~~~I~l~G~~GsGKST~a~~L~~~~~~~~~i~~D-~~r~~~~~~~~-g~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~--   76 (301)
T 1ltq_A            2 KKIILTIGCPGSGKSTWAREFIAKNPGFYNINRD-DYRQSIMAHEE-RDE-YKYTKKKEGIVTGMQFDTAKSILYGGD--   76 (301)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHSTTEEEECHH-HHHHHHTTSCC-CC----CCHHHHHHHHHHHHHHHHHHTTSCT--
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHhCCCcEEeccc-HHHHHhccCCc-ccc-cccchhhhhHHHHHHHHHHHHHHhhcc--
Confidence            3578999999999999999999985 99999997 56655432111 000 000011112233445555555553211  


Q ss_pred             CcceEEEeCCCCCHHHHHh
Q 030464          157 GEIGFILDGLPRSRIQATI  175 (177)
Q Consensus       157 ~~~G~ILDGfPrt~~QAe~  175 (177)
                      ...++|+||++.+..+.+.
T Consensus        77 ~g~~vi~d~~~~~~~~~~~   95 (301)
T 1ltq_A           77 SVKGVIISDTNLNPERRLA   95 (301)
T ss_dssp             TCCEEEECSCCCCHHHHHH
T ss_pred             CCCEEEEeCCCCCHHHHHH
Confidence            2578999999998766543

>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1

Probab=99.04  E-value=2.7e-10  Score=87.35  Aligned_cols=39  Identities=13%  Similarity=0.109  Sum_probs=34.7

Q ss_pred             eEEEEEcCCCCCchHHHHHHHHHhC-----CCeeeCchhhhhcc
Q 030464           79 VHWAFIGSPRAKKHVYAEMLSKLLE-----VPRISMSSIVRQDL  117 (177)
Q Consensus        79 ~~IlIiGpPGSGKSTlA~~LAk~lg-----l~~Is~~dLlr~el  117 (177)
                      +.|+|+|+|||||||+|+.|++.++     +.+++.++++++.+
T Consensus         2 ~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~~~~~~~~~~~~   45 (194)
T 1nks_A            2 KIGIVTGIPGVGKSTVLAKVKEILDNQGINNKIINYGDFMLATA   45 (194)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHHHHHTTTCCEEEEEHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEEECChHHHHHH
Confidence            5799999999999999999999998     88998888887544

>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}

Probab=99.03  E-value=1.1e-09  Score=85.99  Aligned_cols=84  Identities=12%  Similarity=0.096  Sum_probs=55.4

Q ss_pred             CCeEEEEEcCCCCCchHHHHHHHHHhCCCeeeCchhhhhccCCCCchHHHHHHHHHcCCcchHHHHHH---HHHHHHHcc
Q 030464           77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFG---LLSKRLEDG  153 (177)
Q Consensus        77 ~~~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~dLlr~el~~~s~lgk~i~~~l~~G~~Ipdeli~~---Ll~~~L~~~  153 (177)
                      +++.|+|+|+|||||||+|+.|++.+|+.+++.+++....          ....+..|....+.....   .+.+.+   
T Consensus        17 ~~~~I~l~G~~GsGKSTla~~L~~~lg~~~i~~d~~~~~~----------~~~~~~~g~~~~~~~~~~~~~~l~~~~---   83 (202)
T 3t61_A           17 FPGSIVVMGVSGSGKSSVGEAIAEACGYPFIEGDALHPPE----------NIRKMSEGIPLTDDDRWPWLAAIGERL---   83 (202)
T ss_dssp             CSSCEEEECSTTSCHHHHHHHHHHHHTCCEEEGGGGCCHH----------HHHHHHHTCCCCHHHHHHHHHHHHHHH---
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHhCCEEEeCCcCcchh----------hHHHHhcCCCCCchhhHHHHHHHHHHH---
Confidence            3568999999999999999999999999999988775321          122233454444332222   222222   


Q ss_pred             CCCCcceEEEeCCCCCHHHHHh
Q 030464          154 YYRGEIGFILDGLPRSRIQATI  175 (177)
Q Consensus       154 ~~~~~~G~ILDGfPrt~~QAe~  175 (177)
                      .  ...++|+|+......+.+.
T Consensus        84 ~--~~~~vivd~~~~~~~~~~~  103 (202)
T 3t61_A           84 A--SREPVVVSCSALKRSYRDK  103 (202)
T ss_dssp             T--SSSCCEEECCCCSHHHHHH
T ss_pred             h--cCCCEEEECCCCCHHHHHH
Confidence            1  2568999988776655443

>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*

Probab=99.03  E-value=3.4e-10  Score=88.20  Aligned_cols=83  Identities=20%  Similarity=0.238  Sum_probs=56.8

Q ss_pred             CCeEEEEEcCCCCCchHHHHHHHHHh-CCCeeeCchhhhhccCCCCchHHHHHHHHHcCCcchHHHHHHHH---------
Q 030464           77 RGVHWAFIGSPRAKKHVYAEMLSKLL-EVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGLL---------  146 (177)
Q Consensus        77 ~~~~IlIiGpPGSGKSTlA~~LAk~l-gl~~Is~~dLlr~el~~~s~lgk~i~~~l~~G~~Ipdeli~~Ll---------  146 (177)
                      +++.|+|+|+|||||||+++.|++.+ |++++++.+.     ...+..++.+++.+..+..+.+... .++         
T Consensus         3 ~~~~I~l~G~~GsGKsT~~~~L~~~l~g~~~~~~~~~-----~~~~~~g~~i~~~~~~~~~~~~~~~-~~l~~~~r~~~~   76 (204)
T 2v54_A            3 RGALIVFEGLDKSGKTTQCMNIMESIPANTIKYLNFP-----QRSTVTGKMIDDYLTRKKTYNDHIV-NLLFCANRWEFA   76 (204)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHTSCGGGEEEEESS-----CTTSHHHHHHHHHHTSSCCCCHHHH-HHHHHHHHHTTH
T ss_pred             CCcEEEEEcCCCCCHHHHHHHHHHHHCCCceEEEecC-----CCCCcHHHHHHHHHhcCCCCCHHHH-HHHHHHHHHHHH
Confidence            57889999999999999999999998 6888876432     1235677888888876654433321 221         


Q ss_pred             ---HHHHHccCCCCcceEEEeCCCCCH
Q 030464          147 ---SKRLEDGYYRGEIGFILDGLPRSR  170 (177)
Q Consensus       147 ---~~~L~~~~~~~~~G~ILDGfPrt~  170 (177)
                         ...+.     ....+|+|+||.+.
T Consensus        77 ~~i~~~l~-----~~~~vi~Dr~~~s~   98 (204)
T 2v54_A           77 SFIQEQLE-----QGITLIVDRYAFSG   98 (204)
T ss_dssp             HHHHHHHH-----TTCEEEEESCHHHH
T ss_pred             HHHHHHHH-----CCCEEEEECchhhH
Confidence               12222     23578999998753

>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A

Probab=99.02  E-value=4e-10  Score=86.45  Aligned_cols=41  Identities=12%  Similarity=0.129  Sum_probs=36.4

Q ss_pred             CCeEEEEEcCCCCCchHHHHHHHHHhC-----CCeeeCchhhhhcc
Q 030464           77 RGVHWAFIGSPRAKKHVYAEMLSKLLE-----VPRISMSSIVRQDL  117 (177)
Q Consensus        77 ~~~~IlIiGpPGSGKSTlA~~LAk~lg-----l~~Is~~dLlr~el  117 (177)
                      +++.|+|.|+|||||||+|+.|++.++     ++++++++++++..
T Consensus         2 ~~~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~i~~~~~~r~~~   47 (192)
T 1kht_A            2 KNKVVVVTGVPGVGSTTSSQLAMDNLRKEGVNYKMVSFGSVMFEVA   47 (192)
T ss_dssp             -CCEEEEECCTTSCHHHHHHHHHHHHHTTTCCCEEEEHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHhcCcceEEEehHHHHHHHH
Confidence            357899999999999999999999998     99999999888653

>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}

Probab=98.99  E-value=6.9e-10  Score=85.54  Aligned_cols=38  Identities=18%  Similarity=0.261  Sum_probs=33.9

Q ss_pred             CCCeEEEEEcCCCCCchHHHHHHHHHhCCCeeeCchhh
Q 030464           76 RRGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIV  113 (177)
Q Consensus        76 ~~~~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~dLl  113 (177)
                      .+++.|+|+|+|||||||+++.|++.+|+++++.+++.
T Consensus         3 ~~~~~I~l~G~~GsGKST~~~~L~~~l~~~~i~~D~~~   40 (193)
T 2rhm_A            3 QTPALIIVTGHPATGKTTLSQALATGLRLPLLSKDAFK   40 (193)
T ss_dssp             SCCEEEEEEESTTSSHHHHHHHHHHHHTCCEEEHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHcCCeEecHHHHH
Confidence            35678999999999999999999999999999986553

>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*

Probab=98.96  E-value=1.7e-09  Score=85.65  Aligned_cols=39  Identities=15%  Similarity=0.108  Sum_probs=36.2

Q ss_pred             CeEEEEEcCCCCCchHHHHHHHHHhCCCeeeCchhhhhc
Q 030464           78 GVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQD  116 (177)
Q Consensus        78 ~~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~dLlr~e  116 (177)
                      +++|.|+|++||||||+++.|++.+|+++++.|+++++.
T Consensus         5 ~~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d~g~i~~~~   43 (227)
T 1cke_A            5 APVITIDGPSGAGKGTLCKAMAEALQWHLLDSGAIYRVL   43 (227)
T ss_dssp             SCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHhCCCcccCcceeehh
Confidence            468999999999999999999999999999999999854

>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1

Probab=98.94  E-value=1.1e-09  Score=85.32  Aligned_cols=41  Identities=20%  Similarity=0.413  Sum_probs=37.9

Q ss_pred             CCCeEEEEEcCCCCCchHHHHHHHHH-hCCCeeeCchhhhhc
Q 030464           76 RRGVHWAFIGSPRAKKHVYAEMLSKL-LEVPRISMSSIVRQD  116 (177)
Q Consensus        76 ~~~~~IlIiGpPGSGKSTlA~~LAk~-lgl~~Is~~dLlr~e  116 (177)
                      .++++|+|+|+|||||||+++.|++. +|++++++++++++.
T Consensus         8 ~~~~~I~l~G~~GsGKSTv~~~La~~l~g~~~id~d~~~~~~   49 (184)
T 1y63_A            8 PKGINILITGTPGTGKTSMAEMIAAELDGFQHLEVGKLVKEN   49 (184)
T ss_dssp             CSSCEEEEECSTTSSHHHHHHHHHHHSTTEEEEEHHHHHHHT
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHHhcCCCEEeeHHHHHHHh
Confidence            46778999999999999999999999 899999999999874

>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}

Probab=98.94  E-value=1.5e-09  Score=88.89  Aligned_cols=91  Identities=12%  Similarity=0.106  Sum_probs=52.4

Q ss_pred             cCCCeEEEEEcCCCCCchHHHHHHHHHhCC--CeeeCchhhhhccCCC----CchHHHHHHHHHcCCcchHHHHHHHHHH
Q 030464           75 RRRGVHWAFIGSPRAKKHVYAEMLSKLLEV--PRISMSSIVRQDLSPR----SSLHKQIANAVNRGEVVSEDIIFGLLSK  148 (177)
Q Consensus        75 ~~~~~~IlIiGpPGSGKSTlA~~LAk~lgl--~~Is~~dLlr~el~~~----s~lgk~i~~~l~~G~~Ipdeli~~Ll~~  148 (177)
                      ..++..|+|+|+|||||||+|+.|++.++.  .+++ +|.++..+...    ...+..+......   ....++..++..
T Consensus        29 ~~~~~~i~l~G~~GsGKSTla~~L~~~l~~~~~~~~-~D~~r~~~~~~~~i~~~~g~~~~~~~~~---~~~~~~~~~~~~  104 (253)
T 2p5t_B           29 SKQPIAILLGGQSGAGKTTIHRIKQKEFQGNIVIID-GDSFRSQHPHYLELQQEYGKDSVEYTKD---FAGKMVESLVTK  104 (253)
T ss_dssp             CSSCEEEEEESCGGGTTHHHHHHHHHHTTTCCEEEC-GGGGGTTSTTHHHHHTTCSSTTHHHHHH---HHHHHHHHHHHH
T ss_pred             ccCCeEEEEECCCCCCHHHHHHHHHHhcCCCcEEEe-cHHHHHhchhHHHHHHHcCchHHHHhhH---HHHHHHHHHHHH
Confidence            356788999999999999999999999873  4444 46666543220    0011111111110   011222333333


Q ss_pred             HHHccCCCCcceEEEeCCCCCHHHHH
Q 030464          149 RLEDGYYRGEIGFILDGLPRSRIQAT  174 (177)
Q Consensus       149 ~L~~~~~~~~~G~ILDGfPrt~~QAe  174 (177)
                      .+..     ..+|||||++++..|.+
T Consensus       105 ~~~~-----g~~vVid~~~~~~~~~~  125 (253)
T 2p5t_B          105 LSSL-----GYNLLIEGTLRTVDVPK  125 (253)
T ss_dssp             HHHT-----TCCEEEECCTTSSHHHH
T ss_pred             HHhc-----CCCEEEeCCCCCHHHHH
Confidence            2222     34899999999876644

>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}

Probab=98.92  E-value=1e-09  Score=86.41  Aligned_cols=41  Identities=20%  Similarity=0.238  Sum_probs=36.9

Q ss_pred             CCCeEEEEEcCCCCCchHHHHHHHHHhCCCeeeCchhhhhc
Q 030464           76 RRGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQD  116 (177)
Q Consensus        76 ~~~~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~dLlr~e  116 (177)
                      .++..|+|+|+|||||||+++.|++.+|+++++.+++++..
T Consensus        23 ~~~~~i~l~G~~GsGKsTl~~~La~~l~~~~i~~d~~~~~~   63 (199)
T 3vaa_A           23 NAMVRIFLTGYMGAGKTTLGKAFARKLNVPFIDLDWYIEER   63 (199)
T ss_dssp             -CCCEEEEECCTTSCHHHHHHHHHHHHTCCEEEHHHHHHHH
T ss_pred             CCCCEEEEEcCCCCCHHHHHHHHHHHcCCCEEcchHHHHHH
Confidence            45678999999999999999999999999999999988764

>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*

Probab=98.89  E-value=2.9e-09  Score=82.00  Aligned_cols=39  Identities=21%  Similarity=0.249  Sum_probs=35.9

Q ss_pred             eEEEEEcCCCCCchHHHHHHHHHhCCCeeeCchhhhhcc
Q 030464           79 VHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDL  117 (177)
Q Consensus        79 ~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~dLlr~el  117 (177)
                      ++|+|+|+|||||||+|+.|++++|+++++.++++++..
T Consensus         3 ~~I~l~G~~GsGKsT~a~~La~~lg~~~id~D~~~~~~~   41 (184)
T 2iyv_A            3 PKAVLVGLPGSGKSTIGRRLAKALGVGLLDTDVAIEQRT   41 (184)
T ss_dssp             CSEEEECSTTSSHHHHHHHHHHHHTCCEEEHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHcCCCEEeCchHHHHHc
Confidence            469999999999999999999999999999999888654

>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2

Probab=98.88  E-value=1.5e-09  Score=83.38  Aligned_cols=38  Identities=24%  Similarity=0.275  Sum_probs=35.1

Q ss_pred             eEEEEEcCCCCCchHHHHHHHHHhCCCeeeCchhhhhc
Q 030464           79 VHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQD  116 (177)
Q Consensus        79 ~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~dLlr~e  116 (177)
                      ++|+|+|+|||||||+|+.|++.+|+++++.++++++.
T Consensus         5 ~~i~i~G~~GsGKsTla~~La~~l~~~~~d~d~~~~~~   42 (175)
T 1via_A            5 KNIVFIGFMGSGKSTLARALAKDLDLVFLDSDFLIEQK   42 (175)
T ss_dssp             CCEEEECCTTSCHHHHHHHHHHHHTCEEEEHHHHHHHH
T ss_pred             CEEEEEcCCCCCHHHHHHHHHHHcCCCEEcccHHHHHH
Confidence            47999999999999999999999999999999988764

>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A

Probab=98.88  E-value=3e-09  Score=86.54  Aligned_cols=94  Identities=14%  Similarity=0.018  Sum_probs=60.8

Q ss_pred             cCCCeEEEEEcCCCCCchHHHHHHHHHhCC--CeeeCchhhhhccCCCCchHHHHHHHHHcCCcchHHHHH-HHHHHHHH
Q 030464           75 RRRGVHWAFIGSPRAKKHVYAEMLSKLLEV--PRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIF-GLLSKRLE  151 (177)
Q Consensus        75 ~~~~~~IlIiGpPGSGKSTlA~~LAk~lgl--~~Is~~dLlr~el~~~s~lgk~i~~~l~~G~~Ipdeli~-~Ll~~~L~  151 (177)
                      +.+++.|+|.|+|||||||+++.|++.++.  .++..      .....+++++.+++++..+..+.+.... -....+.+
T Consensus        23 ~~~g~~i~i~G~~GsGKsT~~~~l~~~l~~~~~~~~~------~~p~~~~~g~~i~~~~~~~~~~~~~~~~ll~~a~r~~   96 (229)
T 4eaq_A           23 NAMSAFITFEGPEGSGKTTVINEVYHRLVKDYDVIMT------REPGGVPTGEEIRKIVLEGNDMDIRTEAMLFAASRRE   96 (229)
T ss_dssp             CCCCEEEEEECCTTSCHHHHHHHHHHHHTTTSCEEEE------CTTTTCHHHHHHHHHTTC---CCHHHHHHHHHHHHHH
T ss_pred             cCCCeEEEEEcCCCCCHHHHHHHHHHHHhcCCCceee------cCCCCCchHHHHHHHHhCCCCCCHHHHHHHHHHHHHH
Confidence            457889999999999999999999999874  33332      2344578899999999888753333221 11223332


Q ss_pred             cc------CCCCcceEEEe----------CCCCCHHHHH
Q 030464          152 DG------YYRGEIGFILD----------GLPRSRIQAT  174 (177)
Q Consensus       152 ~~------~~~~~~G~ILD----------GfPrt~~QAe  174 (177)
                      ..      .......+|+|          |+|++..++.
T Consensus        97 ~~~~~i~~~l~~g~~Vi~DRy~~s~~ayqg~~r~~~~~~  135 (229)
T 4eaq_A           97 HLVLKVIPALKEGKVVLCDRYIDSSLAYQGYARGIGVEE  135 (229)
T ss_dssp             HCCCCCHHHHHTTCEEEEECCHHHHCCCCCCCSCSCHHH
T ss_pred             HHHHHHHHHHHCCCEEEECCchhHHHHHHHhhcCCCHHH
Confidence            21      00124579999          9999876653

>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*

Probab=98.85  E-value=2.4e-09  Score=81.54  Aligned_cols=40  Identities=20%  Similarity=0.238  Sum_probs=36.1

Q ss_pred             CeEEEEEcCCCCCchHHHHHHHHHhCCCeeeCchhhhhcc
Q 030464           78 GVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDL  117 (177)
Q Consensus        78 ~~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~dLlr~el  117 (177)
                      +.+|+|+|+|||||||+|+.|++++|+++++.++++++..
T Consensus         7 ~~~i~l~G~~GsGKSTva~~La~~lg~~~id~D~~~~~~~   46 (168)
T 1zuh_A            7 MQHLVLIGFMGSGKSSLAQELGLALKLEVLDTDMIISERV   46 (168)
T ss_dssp             -CEEEEESCTTSSHHHHHHHHHHHHTCCEEEHHHHHHHHH
T ss_pred             cceEEEECCCCCCHHHHHHHHHHHhCCCEEEChHHHHHHh
Confidence            4578999999999999999999999999999999888754

>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*

Probab=98.84  E-value=5.3e-09  Score=81.84  Aligned_cols=63  Identities=19%  Similarity=0.240  Sum_probs=46.8

Q ss_pred             CCCeEEEEEcCCCCCchHHHHHHHHHhCCCeeeCchhhhhccCCCCchHHHHHHHHHcCCcchHH
Q 030464           76 RRGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSED  140 (177)
Q Consensus        76 ~~~~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~dLlr~el~~~s~lgk~i~~~l~~G~~Ipde  140 (177)
                      .+++.|+|+|+|||||||+|+.|++.++..++++. .+++. ...+..++.+++.+..+..++++
T Consensus         7 ~~~~~I~l~G~~GsGKsT~~~~L~~~l~~~~~~v~-~~~~~-~~~~~~~~~i~~~~~~~~~~~~~   69 (215)
T 1nn5_A            7 RRGALIVLEGVDRAGKSTQSRKLVEALCAAGHRAE-LLRFP-ERSTEIGKLLSSYLQKKSDVEDH   69 (215)
T ss_dssp             CCCCEEEEEESTTSSHHHHHHHHHHHHHHTTCCEE-EEESS-CTTSHHHHHHHHHHTTSSCCCHH
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHHHHHHHcCCcEE-EeeCC-CCCCcHHHHHHHHHhcCCCCCHH
Confidence            35788999999999999999999999887777663 33332 22366777788888776655554

>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*

Probab=98.82  E-value=6.6e-09  Score=85.49  Aligned_cols=81  Identities=15%  Similarity=0.181  Sum_probs=50.9

Q ss_pred             CCeEEEEEcCCCCCchHHHHHHHHH---hCCCee--eCchhhhhccCCCCchHHHHHHHHHcCCcchHHHHHHHHHHHHH
Q 030464           77 RGVHWAFIGSPRAKKHVYAEMLSKL---LEVPRI--SMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGLLSKRLE  151 (177)
Q Consensus        77 ~~~~IlIiGpPGSGKSTlA~~LAk~---lgl~~I--s~~dLlr~el~~~s~lgk~i~~~l~~G~~Ipdeli~~Ll~~~L~  151 (177)
                      +++.|+|+|+|||||||+|+.|++.   .|++++  +. |.++..+..-...          ++.....+....++..+.
T Consensus         3 ~~~lIvl~G~pGSGKSTla~~La~~L~~~g~~~i~~~~-D~~~~~l~~~~~~----------~e~~~~~~~~~~i~~~l~   71 (260)
T 3a4m_A            3 DIMLIILTGLPGVGKSTFSKNLAKILSKNNIDVIVLGS-DLIRESFPVWKEK----------YEEFIKKSTYRLIDSALK   71 (260)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECT-HHHHTTSSSCCGG----------GHHHHHHHHHHHHHHHHT
T ss_pred             CCEEEEEEcCCCCCHHHHHHHHHHHHHhCCCEEEEECc-hHHHHHHhhhhHH----------HHHHHHHHHHHHHHHHhh
Confidence            5678999999999999999999998   788887  65 4455444321111          111112222333444332


Q ss_pred             ccCCCCcceEEEeCCCCCHHHHH
Q 030464          152 DGYYRGEIGFILDGLPRSRIQAT  174 (177)
Q Consensus       152 ~~~~~~~~G~ILDGfPrt~~QAe  174 (177)
                           . ..+|+||.+....+.+
T Consensus        72 -----~-~~vIiD~~~~~~~~~~   88 (260)
T 3a4m_A           72 -----N-YWVIVDDTNYYNSMRR   88 (260)
T ss_dssp             -----T-SEEEECSCCCSHHHHH
T ss_pred             -----C-CEEEEeCCcccHHHHH
Confidence                 2 5899999877655433

>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}

Probab=98.81  E-value=6.4e-09  Score=81.32  Aligned_cols=49  Identities=10%  Similarity=0.160  Sum_probs=40.1

Q ss_pred             eEEEEEcCCCCCchHHHHHHHHHhCCCeeeCchhhhhccCCCCchHHHHH
Q 030464           79 VHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIA  128 (177)
Q Consensus        79 ~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~dLlr~el~~~s~lgk~i~  128 (177)
                      ++|+|+|++||||||+++.|++ +|++++++++++++...........+.
T Consensus         2 ~~i~i~G~~GsGKSTl~~~L~~-~g~~~i~~d~~~~~~~~~~~~~~~~i~   50 (204)
T 2if2_A            2 KRIGLTGNIGCGKSTVAQMFRE-LGAYVLDADKLIHSFYRKGHPVYEEVV   50 (204)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHH-TTCEEEEHHHHHHGGGSSSSHHHHHHH
T ss_pred             eEEEEECCCCcCHHHHHHHHHH-CCCEEEEccHHHHHHhcCCHHHHHHHH
Confidence            5799999999999999999999 999999999999876654444333333

>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1

Probab=98.81  E-value=2.3e-08  Score=78.41  Aligned_cols=41  Identities=17%  Similarity=0.285  Sum_probs=36.1

Q ss_pred             eEEEEEcCCCCCchHHHHHHHHHhCCCeeeCchhhhhccCCC
Q 030464           79 VHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPR  120 (177)
Q Consensus        79 ~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~dLlr~el~~~  120 (177)
                      ++|.|+|++||||||+++.|++ +|+++++.+++.+......
T Consensus         3 ~~i~l~G~~GsGKST~~~~La~-lg~~~id~d~~~~~~~~~~   43 (206)
T 1jjv_A            3 YIVGLTGGIGSGKTTIANLFTD-LGVPLVDADVVAREVVAKD   43 (206)
T ss_dssp             EEEEEECSTTSCHHHHHHHHHT-TTCCEEEHHHHHHHTTCSS
T ss_pred             cEEEEECCCCCCHHHHHHHHHH-CCCcccchHHHHHHHccCC
Confidence            5789999999999999999988 9999999999988765443

>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}

Probab=98.80  E-value=1.4e-08  Score=77.58  Aligned_cols=33  Identities=18%  Similarity=-0.028  Sum_probs=24.9

Q ss_pred             cCCCeEEEEEcCCCCCchHHHHHHHHHhCCCee
Q 030464           75 RRRGVHWAFIGSPRAKKHVYAEMLSKLLEVPRI  107 (177)
Q Consensus        75 ~~~~~~IlIiGpPGSGKSTlA~~LAk~lgl~~I  107 (177)
                      |++++.|+|+|+|||||||+|+.|++.+|.+++
T Consensus         2 ~~~~~~I~l~G~~GsGKST~a~~La~~l~~~~i   34 (183)
T 2vli_A            2 PMRSPIIWINGPFGVGKTHTAHTLHERLPGSFV   34 (183)
T ss_dssp             ---CCEEEEECCC----CHHHHHHHHHSTTCEE
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHhcCCCEE
Confidence            356788999999999999999999999999988

>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A

Probab=98.79  E-value=1.1e-08  Score=81.16  Aligned_cols=53  Identities=23%  Similarity=0.228  Sum_probs=42.4

Q ss_pred             CCeEEEEEcCCCCCchHHHHHHHHHhCCCeeeCchhhhhccCCCCchHHHHHHH
Q 030464           77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANA  130 (177)
Q Consensus        77 ~~~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~dLlr~el~~~s~lgk~i~~~  130 (177)
                      +++.|+|+|++||||||+++.|++ +|+++++.+++++............+.+.
T Consensus         3 ~~~~I~i~G~~GSGKST~~~~L~~-lg~~~id~D~~~~~~~~~~~~~~~~i~~~   55 (218)
T 1vht_A            3 LRYIVALTGGIGSGKSTVANAFAD-LGINVIDADIIARQVVEPGAPALHAIADH   55 (218)
T ss_dssp             CCEEEEEECCTTSCHHHHHHHHHH-TTCEEEEHHHHHHHTTSTTCTHHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHH-cCCEEEEccHHHHHHhcCChHHHHHHHHH
Confidence            567899999999999999999998 99999999999887665544444444333

>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}

Probab=98.79  E-value=1.6e-08  Score=84.42  Aligned_cols=52  Identities=13%  Similarity=0.081  Sum_probs=42.7

Q ss_pred             cCCCeEEEEEcCCCCCchHHHHHHHHHhCCCeeeCchhhhhccCCCCchHHHH
Q 030464           75 RRRGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQI  127 (177)
Q Consensus        75 ~~~~~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~dLlr~el~~~s~lgk~i  127 (177)
                      +.+++.|+|+|+|||||||+|+.|+ .+|+++|+++++.++...........+
T Consensus        72 ~~~~~iI~I~G~~GSGKSTva~~La-~lg~~~id~D~~~~~~~~~~~~~~~~i  123 (281)
T 2f6r_A           72 PSGLYVLGLTGISGSGKSSVAQRLK-NLGAYIIDSDHLGHRAYAPGGPAYQPV  123 (281)
T ss_dssp             CTTCEEEEEEECTTSCHHHHHHHHH-HHTCEEEEHHHHHHHHTSTTSTTHHHH
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHH-HCCCcEEehhHHHHHHhcCChHHHHHH
Confidence            3567889999999999999999999 689999999999887766555444333

>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*

Probab=98.78  E-value=6.4e-09  Score=87.35  Aligned_cols=89  Identities=11%  Similarity=0.099  Sum_probs=55.1

Q ss_pred             CCCeEEEEEcCCCCCchHHHHHHHHHh--CCCeeeCchhhhhccCCCCchHHHHHHHHHcC----CcchHHHHHHHHHHH
Q 030464           76 RRGVHWAFIGSPRAKKHVYAEMLSKLL--EVPRISMSSIVRQDLSPRSSLHKQIANAVNRG----EVVSEDIIFGLLSKR  149 (177)
Q Consensus        76 ~~~~~IlIiGpPGSGKSTlA~~LAk~l--gl~~Is~~dLlr~el~~~s~lgk~i~~~l~~G----~~Ipdeli~~Ll~~~  149 (177)
                      .++..|+|.|+|||||||+|+.|++.+  ++.+||. |.++........   .+......-    ......+...++.+.
T Consensus        31 ~~~~livl~G~sGsGKSTla~~L~~~~~~~~~~Is~-D~~R~~~~~~~~---~~~~~~~~a~~~~~~~~~~~~~~~v~~~  106 (287)
T 1gvn_B           31 ESPTAFLLGGQPGSGKTSLRSAIFEETQGNVIVIDN-DTFKQQHPNFDE---LVKLYEKDVVKHVTPYSNRMTEAIISRL  106 (287)
T ss_dssp             SSCEEEEEECCTTSCTHHHHHHHHHHTTTCCEEECT-HHHHTTSTTHHH---HHHHHGGGCHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHhCCCeEEEec-hHhHHhchhhHH---HHHHccchhhhhhhHHHHHHHHHHHHHH
Confidence            467889999999999999999999998  7888886 556654332111   111110000    011223344455554


Q ss_pred             HHccCCCCcceEEEeCCCCCHHHH
Q 030464          150 LEDGYYRGEIGFILDGLPRSRIQA  173 (177)
Q Consensus       150 L~~~~~~~~~G~ILDGfPrt~~QA  173 (177)
                      +..     ...+|||+...+..|.
T Consensus       107 l~~-----g~~vIld~~~~~~~~~  125 (287)
T 1gvn_B          107 SDQ-----GYNLVIEGTGRTTDVP  125 (287)
T ss_dssp             HHH-----TCCEEECCCCCCSHHH
T ss_pred             Hhc-----CCeEEEECCCCCHHHH
Confidence            443     3579999999886643

>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}

Probab=98.75  E-value=8.1e-09  Score=80.34  Aligned_cols=29  Identities=31%  Similarity=0.412  Sum_probs=26.6

Q ss_pred             CCeEEEEEcCCCCCchHHHHHHHHHhCCC
Q 030464           77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVP  105 (177)
Q Consensus        77 ~~~~IlIiGpPGSGKSTlA~~LAk~lgl~  105 (177)
                      +++.|+|.|+|||||||+|+.|++.++..
T Consensus         3 ~~~~I~i~G~~GsGKsT~~~~L~~~l~~~   31 (213)
T 2plr_A            3 KGVLIAFEGIDGSGKSSQATLLKDWIELK   31 (213)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHHHTTT
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHHhhc
Confidence            56789999999999999999999999874

>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}

Probab=98.71  E-value=7.9e-09  Score=79.47  Aligned_cols=40  Identities=18%  Similarity=0.059  Sum_probs=36.3

Q ss_pred             CeEEEEEcCCCCCchHHHHHHHHHhCCCeeeCchhhhhcc
Q 030464           78 GVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDL  117 (177)
Q Consensus        78 ~~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~dLlr~el  117 (177)
                      +.+|+|+|+|||||||+|+.|++.+|+++++.++++++..
T Consensus         5 ~~~i~l~G~~GsGKst~a~~La~~l~~~~i~~d~~~~~~~   44 (185)
T 3trf_A            5 LTNIYLIGLMGAGKTSVGSQLAKLTKRILYDSDKEIEKRT   44 (185)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHHHCCCEEEHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHhCCCEEEChHHHHHHc
Confidence            5679999999999999999999999999999998877643

>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*

Probab=98.68  E-value=1.5e-08  Score=76.36  Aligned_cols=37  Identities=30%  Similarity=0.152  Sum_probs=33.6

Q ss_pred             eEEEEEcCCCCCchHHHHHHHHHhCCCeeeCchhhhh
Q 030464           79 VHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQ  115 (177)
Q Consensus        79 ~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~dLlr~  115 (177)
                      +.|+|+|+|||||||+|+.|++.+|+++++.+.+...
T Consensus         2 ~~i~l~G~~GsGKsT~~~~L~~~l~~~~i~~d~~~~~   38 (173)
T 3kb2_A            2 TLIILEGPDCCFKSTVAAKLSKELKYPIIKGSSFELA   38 (173)
T ss_dssp             CEEEEECSSSSSHHHHHHHHHHHHCCCEEECCCHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhCCeeecCcccccc
Confidence            4789999999999999999999999999999876654

>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}

Probab=98.68  E-value=1.2e-08  Score=77.14  Aligned_cols=39  Identities=21%  Similarity=0.264  Sum_probs=35.7

Q ss_pred             eEEEEEcCCCCCchHHHHHHHHHhCCCeeeCchhhhhcc
Q 030464           79 VHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDL  117 (177)
Q Consensus        79 ~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~dLlr~el  117 (177)
                      ++|+|+|+|||||||+|+.|++.+|+++++.+++.+...
T Consensus         1 m~I~l~G~~GsGKsT~a~~L~~~l~~~~i~~d~~~~~~~   39 (168)
T 2pt5_A            1 MRIYLIGFMCSGKSTVGSLLSRSLNIPFYDVDEEVQKRE   39 (168)
T ss_dssp             CEEEEESCTTSCHHHHHHHHHHHHTCCEEEHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHhCCCEEECcHHHHHHc
Confidence            479999999999999999999999999999999887653

>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A

Probab=98.67  E-value=1.1e-08  Score=78.62  Aligned_cols=41  Identities=15%  Similarity=0.204  Sum_probs=37.2

Q ss_pred             CCCeEEEEEcCCCCCchHHHHHHHHHhCCCeeeCchhhhhc
Q 030464           76 RRGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQD  116 (177)
Q Consensus        76 ~~~~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~dLlr~e  116 (177)
                      .++..|+|+|+|||||||+++.|++.+|+.++++++++++.
T Consensus         9 ~~~~~i~i~G~~GsGKst~~~~l~~~~~~~~~~~d~~~~~~   49 (180)
T 3iij_A            9 MLLPNILLTGTPGVGKTTLGKELASKSGLKYINVGDLAREE   49 (180)
T ss_dssp             CCCCCEEEECSTTSSHHHHHHHHHHHHCCEEEEHHHHHHHH
T ss_pred             ccCCeEEEEeCCCCCHHHHHHHHHHHhCCeEEEHHHHHhhc
Confidence            35677999999999999999999999999999999988764

>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*

Probab=98.67  E-value=9.7e-09  Score=77.86  Aligned_cols=38  Identities=8%  Similarity=0.098  Sum_probs=35.2

Q ss_pred             eEEEEEcCCCCCchHHHHHHHHHhCCCeeeCchhhhhc
Q 030464           79 VHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQD  116 (177)
Q Consensus        79 ~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~dLlr~e  116 (177)
                      +.|+|+|+|||||||+|+.|++.+|+++++.+++++..
T Consensus         3 ~~I~l~G~~GsGKsT~a~~La~~lg~~~id~d~~~~~~   40 (173)
T 1e6c_A            3 EPIFMVGARGCGMTTVGRELARALGYEFVDTDIFMQHT   40 (173)
T ss_dssp             CCEEEESCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHH
T ss_pred             ceEEEECCCCCCHHHHHHHHHHHhCCcEEcccHHHHHH
Confidence            57999999999999999999999999999999888765

>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}

Probab=98.63  E-value=9.2e-08  Score=78.36  Aligned_cols=40  Identities=18%  Similarity=0.104  Sum_probs=36.7

Q ss_pred             CCCeEEEEEcCCCCCchHHHHHHHHHhCCCeeeCchhhhh
Q 030464           76 RRGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQ  115 (177)
Q Consensus        76 ~~~~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~dLlr~  115 (177)
                      .++.+|.|+|++||||||+++.|++++|+.+++.|+++|.
T Consensus        25 ~~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~d~g~i~r~   64 (252)
T 4e22_A           25 AIAPVITVDGPSGAGKGTLCKALAESLNWRLLDSGAIYRV   64 (252)
T ss_dssp             TTSCEEEEECCTTSSHHHHHHHHHHHTTCEEEEHHHHHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHhcCCCcCCCCceehH
Confidence            3567899999999999999999999999999999999855

>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}

Probab=98.63  E-value=3.1e-08  Score=82.14  Aligned_cols=86  Identities=16%  Similarity=0.137  Sum_probs=57.5

Q ss_pred             CeEEEEEcCCCCCchHHHHHHHHHhCCCeeeCchhhhhccCCCCchHHHHHHHHH-cCCcchHHHHHHHHHHHHHccCCC
Q 030464           78 GVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVN-RGEVVSEDIIFGLLSKRLEDGYYR  156 (177)
Q Consensus        78 ~~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~dLlr~el~~~s~lgk~i~~~l~-~G~~Ipdeli~~Ll~~~L~~~~~~  156 (177)
                      +.+|+|+|++||||||+++.|++.+|+.+++.+++++.... +..+    ...+. .|+....++..+++.+.+...   
T Consensus        48 g~~i~l~G~~GsGKSTl~~~La~~lg~~~~d~d~~~~~~~~-g~~i----~~i~~~~ge~~fr~~e~~~l~~l~~~~---  119 (250)
T 3nwj_A           48 GRSMYLVGMMGSGKTTVGKIMARSLGYTFFDCDTLIEQAMK-GTSV----AEIFEHFGESVFREKETEALKKLSLMY---  119 (250)
T ss_dssp             TCCEEEECSTTSCHHHHHHHHHHHHTCEEEEHHHHHHHHST-TSCH----HHHHHHHCHHHHHHHHHHHHHHHHHHC---
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHhcCCcEEeCcHHHHHHhc-CccH----HHHHHHhCcHHHHHHHHHHHHHHHhhc---
Confidence            67899999999999999999999999999999999887652 2222    22222 365555555555665544331   


Q ss_pred             CcceEEEe--CCCCCHHH
Q 030464          157 GEIGFILD--GLPRSRIQ  172 (177)
Q Consensus       157 ~~~G~ILD--GfPrt~~Q  172 (177)
                       ..++|.+  |.+.....
T Consensus       120 -~~~Via~GgG~v~~~~~  136 (250)
T 3nwj_A          120 -HQVVVSTGGGAVIRPIN  136 (250)
T ss_dssp             -SSEEEECCGGGGGSHHH
T ss_pred             -CCcEEecCCCeecCHHH
Confidence             1345544  45554443

>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1

Probab=98.63  E-value=1.9e-08  Score=77.91  Aligned_cols=43  Identities=14%  Similarity=0.247  Sum_probs=37.4

Q ss_pred             ccCCCeEEEEEcCCCCCchHHHHHHHHHhCCCeeeCchhhhhcc
Q 030464           74 ERRRGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDL  117 (177)
Q Consensus        74 ~~~~~~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~dLlr~el  117 (177)
                      -+.++++|+|+|++||||||+++.|++. |+++++.++++++..
T Consensus         4 ~~~~~~~I~i~G~~GsGKST~~~~La~~-g~~~id~d~~~~~~~   46 (203)
T 1uf9_A            4 EAKHPIIIGITGNIGSGKSTVAALLRSW-GYPVLDLDALAARAR   46 (203)
T ss_dssp             --CCCEEEEEEECTTSCHHHHHHHHHHT-TCCEEEHHHHHHHHH
T ss_pred             cccCceEEEEECCCCCCHHHHHHHHHHC-CCEEEcccHHHHHhc
Confidence            3457789999999999999999999998 999999999887654

>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*

Probab=98.59  E-value=1.2e-07  Score=83.40  Aligned_cols=37  Identities=11%  Similarity=0.056  Sum_probs=33.8

Q ss_pred             CCCeEEEEEcCCCCCchHHHHHHHHHhCCCeeeCchh
Q 030464           76 RRGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSI  112 (177)
Q Consensus        76 ~~~~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~dL  112 (177)
                      .++..|+|+|+|||||||+|+.|++.+++.+|+.+++
T Consensus       256 ~~~~lIil~G~pGSGKSTla~~L~~~~~~~~i~~D~~  292 (416)
T 3zvl_A          256 PNPEVVVAVGFPGAGKSTFIQEHLVSAGYVHVNRDTL  292 (416)
T ss_dssp             SSCCEEEEESCTTSSHHHHHHHHTGGGTCEECCGGGS
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHhcCcEEEccchH
Confidence            4667899999999999999999999999999998775

>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2

Probab=98.56  E-value=3.1e-08  Score=75.21  Aligned_cols=39  Identities=13%  Similarity=0.131  Sum_probs=35.1

Q ss_pred             CeEEEEEcCCCCCchHHHHHHHHHhCCCeeeCchhhhhc
Q 030464           78 GVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQD  116 (177)
Q Consensus        78 ~~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~dLlr~e  116 (177)
                      +..|+|+|+|||||||+++.|++.++.++++.++++++.
T Consensus         4 ~~~i~l~G~~GsGKSTl~~~La~~l~~~~id~d~~~~~~   42 (173)
T 1kag_A            4 KRNIFLVGPMGAGKSTIGRQLAQQLNMEFYDSDQEIEKR   42 (173)
T ss_dssp             CCCEEEECCTTSCHHHHHHHHHHHTTCEEEEHHHHHHHH
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHhCCCEEeccHHHHHH
Confidence            457999999999999999999999999999988877654

>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}

Probab=98.53  E-value=9.8e-08  Score=78.22  Aligned_cols=92  Identities=14%  Similarity=0.075  Sum_probs=55.1

Q ss_pred             CCCeEEEEEcCCCCCchHHHHHHHHHhCCCeeeCc---hhhhhccCCCCchHHHHHHHHHcCCcchHHHHHHHHHHHHHc
Q 030464           76 RRGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMS---SIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGLLSKRLED  152 (177)
Q Consensus        76 ~~~~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~---dLlr~el~~~s~lgk~i~~~l~~G~~Ipdeli~~Ll~~~L~~  152 (177)
                      .+++.|+|.|++||||||+++.|++.++-.+++.+   .+.++.  ..+++|+.+++.+..+...|.....-....|.+.
T Consensus        23 ~~g~~I~~eG~~GsGKsT~~~~l~~~l~~~~~~~g~~v~~~rep--~~t~~g~~ir~~l~~~~~~~~~~~llf~a~R~~~  100 (227)
T 3v9p_A           23 ARGKFITFEGIDGAGKTTHLQWFCDRLQERLGPAGRHVVVTREP--GGTRLGETLREILLNQPMDLETEALLMFAGRREH  100 (227)
T ss_dssp             CCCCEEEEECCC---CHHHHHHHHHHHHHHHGGGTCCEEEEESS--SSSHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHH
T ss_pred             cCCeEEEEECCCCCCHHHHHHHHHHHHHhhccccceeeeeecCC--CCChHHHHHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence            46788999999999999999999998844322222   123332  4678999999999988766654322222222221


Q ss_pred             c------CCCCcceEEEeCCCCC
Q 030464          153 G------YYRGEIGFILDGLPRS  169 (177)
Q Consensus       153 ~------~~~~~~G~ILDGfPrt  169 (177)
                      .      .......+|.|.|.-+
T Consensus       101 ~~~~i~p~l~~g~~VI~DRy~~S  123 (227)
T 3v9p_A          101 LALVIEPALARGDWVVSDRFTDA  123 (227)
T ss_dssp             HHHTHHHHHHTTCEEEEECCHHH
T ss_pred             HHHHHHHHHHcCCEEEEeccHhH
Confidence            0      0001346888987544

>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}

Probab=98.51  E-value=1.5e-07  Score=75.14  Aligned_cols=40  Identities=15%  Similarity=0.164  Sum_probs=35.5

Q ss_pred             CCeEEEEEcCCCCCchHHHHHHHHHhCCCeeeCchhhhhcc
Q 030464           77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDL  117 (177)
Q Consensus        77 ~~~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~dLlr~el  117 (177)
                      +.+.|.|.|++||||||+++.||+++|+++++ +++++...
T Consensus         5 ~~~iI~i~g~~GsGk~ti~~~la~~lg~~~~D-~~~~~~~a   44 (201)
T 3fdi_A            5 KQIIIAIGREFGSGGHLVAKKLAEHYNIPLYS-KELLDEVA   44 (201)
T ss_dssp             -CCEEEEEECTTSSHHHHHHHHHHHTTCCEEC-HHHHHHTT
T ss_pred             CCeEEEEeCCCCCCHHHHHHHHHHHhCcCEEC-HHHHHHHH
Confidence            45689999999999999999999999999999 99987643

>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}

Probab=98.48  E-value=5.1e-07  Score=70.79  Aligned_cols=38  Identities=11%  Similarity=0.045  Sum_probs=33.5

Q ss_pred             CCCeEEEEEcCCCCCchHHHHHHHHHhCCCeeeCchhh
Q 030464           76 RRGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIV  113 (177)
Q Consensus        76 ~~~~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~dLl  113 (177)
                      .++..|+|+|++||||||+++.|++.+|..+++.+++.
T Consensus        27 ~~g~~i~l~G~~GsGKSTl~~~L~~~~g~~~i~~d~~~   64 (200)
T 4eun_A           27 EPTRHVVVMGVSGSGKTTIAHGVADETGLEFAEADAFH   64 (200)
T ss_dssp             -CCCEEEEECCTTSCHHHHHHHHHHHHCCEEEEGGGGS
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHhhCCeEEcccccc
Confidence            35678999999999999999999999999999987764

>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}

Probab=98.48  E-value=7.6e-08  Score=76.65  Aligned_cols=41  Identities=15%  Similarity=0.138  Sum_probs=36.9

Q ss_pred             CeEEEEEcCCCCCchHHHHHHHHHhCCCeeeCchhhhhccC
Q 030464           78 GVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLS  118 (177)
Q Consensus        78 ~~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~dLlr~el~  118 (177)
                      ..+|.|+|++||||||+++.|++.+|+++|++|+++++...
T Consensus        12 ~~iIgltG~~GSGKSTva~~L~~~lg~~vid~D~~~~~~~~   52 (192)
T 2grj_A           12 HMVIGVTGKIGTGKSTVCEILKNKYGAHVVNVDRIGHEVLE   52 (192)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHhcCCEEEECcHHHHHHHH
Confidence            35789999999999999999999999999999999887643

>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*

Probab=98.48  E-value=9.9e-08  Score=74.14  Aligned_cols=37  Identities=22%  Similarity=0.212  Sum_probs=34.8

Q ss_pred             EEEEEcCCCCCchHHHHHHHHHhCCCeeeCchhhhhc
Q 030464           80 HWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQD  116 (177)
Q Consensus        80 ~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~dLlr~e  116 (177)
                      .|.|+|++||||||+++.|++.+|+++++.+++.+..
T Consensus         4 ~i~i~G~~GsGKst~~~~la~~lg~~~~d~d~~~~~~   40 (208)
T 3ake_A            4 IVTIDGPSASGKSSVARRVAAALGVPYLSSGLLYRAA   40 (208)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHTCCEEEHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHhcCCceeccchHHHhh
Confidence            7899999999999999999999999999999988764

>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*

Probab=98.47  E-value=1e-07  Score=72.65  Aligned_cols=38  Identities=18%  Similarity=0.241  Sum_probs=31.0

Q ss_pred             CCeEEEEEcCCCCCchHHHHHHHHHhCCCeee--Cchhhh
Q 030464           77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRIS--MSSIVR  114 (177)
Q Consensus        77 ~~~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is--~~dLlr  114 (177)
                      .+..|+|+|+|||||||+++.|++.++..++.  +++++.
T Consensus         2 ~~~~i~l~G~~GsGKST~a~~La~~l~~~~~~~~~D~~~~   41 (178)
T 1qhx_A            2 TTRMIILNGGSSAGKSGIVRCLQSVLPEPWLAFGVDSLIE   41 (178)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHHSSSCEEEEEHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHhcCCCeEEeccchHhh
Confidence            35679999999999999999999999877664  555443

>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*

Probab=98.46  E-value=8.3e-08  Score=79.10  Aligned_cols=42  Identities=14%  Similarity=0.106  Sum_probs=36.6

Q ss_pred             cCCCeEEEEEcCCCCCchHHHHHHHHHhCCCeeeCchhhhhc
Q 030464           75 RRRGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQD  116 (177)
Q Consensus        75 ~~~~~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~dLlr~e  116 (177)
                      +.+++.|+|+|||||||||+++.|++.+|+.+++.+++++..
T Consensus         6 ~~~~~~i~i~G~~GsGKsTla~~la~~lg~~~~d~g~~~r~~   47 (233)
T 3r20_A            6 VSGSLVVAVDGPAGTGKSSVSRGLARALGARYLDTGAMYRIA   47 (233)
T ss_dssp             ---CCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHH
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHhCCCcccCCcHHHHH
Confidence            346789999999999999999999999999999999998764

>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}

Probab=98.45  E-value=8e-08  Score=75.80  Aligned_cols=40  Identities=18%  Similarity=0.223  Sum_probs=36.2

Q ss_pred             CCeEEEEEcCCCCCchHHHHHHHHHhCCCeeeCchhhhhc
Q 030464           77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQD  116 (177)
Q Consensus        77 ~~~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~dLlr~e  116 (177)
                      +++.|+|+|++||||||+++.|++.+|+++++.+++++..
T Consensus         2 ~~~~i~i~G~~gsGkst~~~~l~~~~g~~~~~~d~~~~~~   41 (219)
T 2h92_A            2 KAINIALDGPAAAGKSTIAKRVASELSMIYVDTGAMYRAL   41 (219)
T ss_dssp             -CCCEEEECCTTSSHHHHHHHHHHHTTCEEEEHHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHhcCCceecCChHHHHH
Confidence            4678999999999999999999999999999999998853

>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*

Probab=98.45  E-value=1.1e-07  Score=77.54  Aligned_cols=40  Identities=18%  Similarity=0.127  Sum_probs=35.7

Q ss_pred             CCCeEEEEEcCCCCCchHHHHHHHHHhCCC----------eeeCchhhhh
Q 030464           76 RRGVHWAFIGSPRAKKHVYAEMLSKLLEVP----------RISMSSIVRQ  115 (177)
Q Consensus        76 ~~~~~IlIiGpPGSGKSTlA~~LAk~lgl~----------~Is~~dLlr~  115 (177)
                      .++++|.|+|+|||||||+|+.|++.+|++          +++++++++.
T Consensus        20 ~~~~iI~I~G~~GSGKST~a~~L~~~lg~~~~d~~~~~~~~i~~D~~~~~   69 (252)
T 1uj2_A           20 GEPFLIGVSGGTASGKSSVCAKIVQLLGQNEVDYRQKQVVILSQDSFYRV   69 (252)
T ss_dssp             -CCEEEEEECSTTSSHHHHHHHHHHHTTGGGSCGGGCSEEEEEGGGGBCC
T ss_pred             CCcEEEEEECCCCCCHHHHHHHHHHHhhhhcccccCCceEEEecCccccc
Confidence            356789999999999999999999999988          7999998874

>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*

Probab=98.42  E-value=1.9e-07  Score=71.14  Aligned_cols=37  Identities=11%  Similarity=0.112  Sum_probs=33.6

Q ss_pred             CCeEEEEEcCCCCCchHHHHHHHHHhCCCeeeCchhh
Q 030464           77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIV  113 (177)
Q Consensus        77 ~~~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~dLl  113 (177)
                      ++..|+|+|+|||||||+++.|++.+|..+++.+++.
T Consensus         7 ~g~~i~l~G~~GsGKSTl~~~l~~~~g~~~i~~d~~~   43 (175)
T 1knq_A            7 DHHIYVLMGVSGSGKSAVASEVAHQLHAAFLDGDFLH   43 (175)
T ss_dssp             TSEEEEEECSTTSCHHHHHHHHHHHHTCEEEEGGGGC
T ss_pred             CCcEEEEEcCCCCCHHHHHHHHHHhhCcEEEeCcccc
Confidence            4678999999999999999999999999999987764

>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}

Probab=98.41  E-value=2.5e-07  Score=75.48  Aligned_cols=40  Identities=8%  Similarity=0.065  Sum_probs=35.8

Q ss_pred             CCeEEEEEcCCCCCchHHHHHHHHHhCCCeeeCchhhhhcc
Q 030464           77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDL  117 (177)
Q Consensus        77 ~~~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~dLlr~el  117 (177)
                      +++.|.|.|++||||||+++.||+++|+++++ +++++...
T Consensus        13 ~~~iI~i~g~~gsGk~~i~~~la~~lg~~~~d-~~~~~~~a   52 (223)
T 3hdt_A           13 KNLIITIEREYGSGGRIVGKKLAEELGIHFYD-DDILKLAS   52 (223)
T ss_dssp             CCEEEEEEECTTSCHHHHHHHHHHHHTCEEEC-HHHHHHHH
T ss_pred             CCeEEEEeCCCCCCHHHHHHHHHHHcCCcEEc-HHHHHHHH
Confidence            45789999999999999999999999999999 78877643

>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1

Probab=98.40  E-value=1.7e-07  Score=75.52  Aligned_cols=41  Identities=15%  Similarity=0.242  Sum_probs=37.5

Q ss_pred             CCCeEEEEEcCCCCCchHHHHHHHHHhCCCeeeCchhhhhc
Q 030464           76 RRGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQD  116 (177)
Q Consensus        76 ~~~~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~dLlr~e  116 (177)
                      .++.+|.|+|++||||||+++.|++.+|+++++.+++++..
T Consensus        14 ~~~~~i~i~G~~gsGKst~~~~l~~~lg~~~~d~d~~~~~~   54 (236)
T 1q3t_A           14 MKTIQIAIDGPASSGKSTVAKIIAKDFGFTYLDTGAMYRAA   54 (236)
T ss_dssp             CCCCEEEEECSSCSSHHHHHHHHHHHHCCEEEEHHHHHHHH
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHHHHcCCceecCCCeeEcc
Confidence            46678999999999999999999999999999999999863

>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A

Probab=98.40  E-value=2.3e-07  Score=76.22  Aligned_cols=35  Identities=11%  Similarity=0.135  Sum_probs=32.4

Q ss_pred             eEEEEEcCCCCCchHHHHHHHHHhCCCeeeCchhh
Q 030464           79 VHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIV  113 (177)
Q Consensus        79 ~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~dLl  113 (177)
                      ..|+|+|||||||||+|+.||+.++..+++++++.
T Consensus         2 ~li~I~G~~GSGKSTla~~La~~~~~~~i~~D~~~   36 (253)
T 2ze6_A            2 LLHLIYGPTCSGKTDMAIQIAQETGWPVVALDRVQ   36 (253)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHHCCCEEECCSGG
T ss_pred             eEEEEECCCCcCHHHHHHHHHhcCCCeEEeccHHh
Confidence            46899999999999999999999999999998864

>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}

Probab=98.37  E-value=5.2e-07  Score=70.97  Aligned_cols=40  Identities=18%  Similarity=0.106  Sum_probs=31.3

Q ss_pred             CCCeEEEEEcCCCCCchHHHHHHHHHhCC-CeeeCchhhhh
Q 030464           76 RRGVHWAFIGSPRAKKHVYAEMLSKLLEV-PRISMSSIVRQ  115 (177)
Q Consensus        76 ~~~~~IlIiGpPGSGKSTlA~~LAk~lgl-~~Is~~dLlr~  115 (177)
                      .++..|+|+|||||||||+++.|++.++- .++++.+..|+
T Consensus        10 ~~~~~i~l~G~sGsGKsTl~~~L~~~~~~~~~~~~~~ttR~   50 (204)
T 2qor_A           10 ARIPPLVVCGPSGVGKGTLIKKVLSEFPSRFRFSISCTTRN   50 (204)
T ss_dssp             CCCCCEEEECCTTSCHHHHHHHHHHHCTTTEEECCEEECSC
T ss_pred             ccCCEEEEECCCCCCHHHHHHHHHHhCccceeeeeeecCCC
Confidence            46678999999999999999999998853 45555555444

>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*

Probab=98.34  E-value=1.4e-07  Score=85.56  Aligned_cols=41  Identities=15%  Similarity=0.203  Sum_probs=32.4

Q ss_pred             CCCeEEEEEcCCCCCchHHHHHHHHHhCCC-----eeeCchhhhhc
Q 030464           76 RRGVHWAFIGSPRAKKHVYAEMLSKLLEVP-----RISMSSIVRQD  116 (177)
Q Consensus        76 ~~~~~IlIiGpPGSGKSTlA~~LAk~lgl~-----~Is~~dLlr~e  116 (177)
                      ..+..|+|+|.|||||||+|++|++.++..     +|+.|++.+..
T Consensus        33 ~~~~lIvlvGlpGSGKSTia~~La~~L~~~~~d~~v~s~D~~r~~~   78 (520)
T 2axn_A           33 NSPTVIVMVGLPARGKTYISKKLTRYLNWIGVPTKVFNVGEYRREA   78 (520)
T ss_dssp             CCCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCCeEEecccHHHHHh
Confidence            356789999999999999999999998544     36777755543

>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*

Probab=98.29  E-value=2e-06  Score=67.90  Aligned_cols=41  Identities=24%  Similarity=0.276  Sum_probs=32.9

Q ss_pred             CCCeEEEEEcCCCCCchHHHHHHHHHhC------CCeeeCchhhhhcc
Q 030464           76 RRGVHWAFIGSPRAKKHVYAEMLSKLLE------VPRISMSSIVRQDL  117 (177)
Q Consensus        76 ~~~~~IlIiGpPGSGKSTlA~~LAk~lg------l~~Is~~dLlr~el  117 (177)
                      .++..|+|+|+|||||||+++.|++.++      +.+++ ++.++..+
T Consensus        23 ~~~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~-~d~~r~~l   69 (211)
T 1m7g_A           23 QRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLD-GDNIRFGL   69 (211)
T ss_dssp             SSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEEC-HHHHTTTT
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEEC-ChHHhhhh
Confidence            4678899999999999999999999876      66676 35556544

>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*

Probab=98.26  E-value=2.1e-06  Score=69.22  Aligned_cols=54  Identities=17%  Similarity=0.190  Sum_probs=42.6

Q ss_pred             CCCeEEEEEcCCCCCchHHHHHHHHHhC---CCeeeCchhhhhccCCCCchHHHHHHHHHcCC
Q 030464           76 RRGVHWAFIGSPRAKKHVYAEMLSKLLE---VPRISMSSIVRQDLSPRSSLHKQIANAVNRGE  135 (177)
Q Consensus        76 ~~~~~IlIiGpPGSGKSTlA~~LAk~lg---l~~Is~~dLlr~el~~~s~lgk~i~~~l~~G~  135 (177)
                      ++++.|+|.|++||||||+++.|++.++   +.++.+    +.  ...+++|+.+++++..+.
T Consensus         4 m~g~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~v~~~----~~--p~~~~~g~~i~~~l~~~~   60 (213)
T 4edh_A            4 MTGLFVTLEGPEGAGKSTNRDYLAERLRERGIEVQLT----RE--PGGTPLAERIRELLLAPS   60 (213)
T ss_dssp             -CCEEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEE----ES--SCSSHHHHHHHHHHHSCC
T ss_pred             CCceEEEEEcCCCCCHHHHHHHHHHHHHHcCCCcccc----cC--CCCCHHHHHHHHHHhcCC
Confidence            4688999999999999999999999884   444433    32  246789999999998874

>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*

Probab=98.23  E-value=5e-07  Score=70.84  Aligned_cols=40  Identities=20%  Similarity=0.219  Sum_probs=35.7

Q ss_pred             CCCeEEEEEcCCCCCchHHHHHHHHHh-CCCeeeCchhhhh
Q 030464           76 RRGVHWAFIGSPRAKKHVYAEMLSKLL-EVPRISMSSIVRQ  115 (177)
Q Consensus        76 ~~~~~IlIiGpPGSGKSTlA~~LAk~l-gl~~Is~~dLlr~  115 (177)
                      .++..|.|+|+|||||||+++.|++.+ ++.+++.++++..
T Consensus        19 ~~~~~i~i~G~~GsGKSTl~~~L~~~~~~~~~i~~D~~~~~   59 (207)
T 2qt1_A           19 SKTFIIGISGVTNSGKTTLAKNLQKHLPNCSVISQDDFFKP   59 (207)
T ss_dssp             CCCEEEEEEESTTSSHHHHHHHHHTTSTTEEEEEGGGGBCC
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHhcCCcEEEeCCccccC
Confidence            456789999999999999999999998 8999999988764

>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*

Probab=98.23  E-value=2.2e-06  Score=70.49  Aligned_cols=56  Identities=14%  Similarity=0.114  Sum_probs=44.3

Q ss_pred             CCCeEEEEEcCCCCCchHHHHHHHHHhCCCeeeCchhhhhccCCCCchHHHHHHHHHc
Q 030464           76 RRGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNR  133 (177)
Q Consensus        76 ~~~~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~dLlr~el~~~s~lgk~i~~~l~~  133 (177)
                      ++++.|+|.|++||||||+++.|++.++..+++...+.++.  ..+++|+.+++++..
T Consensus        25 ~~~~~i~~eG~~GsGKsT~~~~l~~~l~~~~~~~~~~~rep--~~t~~g~~ir~~l~~   80 (236)
T 3lv8_A           25 MNAKFIVIEGLEGAGKSTAIQVVVETLQQNGIDHITRTREP--GGTLLAEKLRALVKE   80 (236)
T ss_dssp             -CCCEEEEEESTTSCHHHHHHHHHHHHHHTTCCCEEEEESS--CSSHHHHHHHHHHHS
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCCeeeeecCC--CCCHHHHHHHHHHhh
Confidence            46788999999999999999999999866666644455543  468899999999863

>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*

Probab=98.21  E-value=1.1e-06  Score=71.52  Aligned_cols=52  Identities=12%  Similarity=0.132  Sum_probs=43.7

Q ss_pred             eEEEEEcCCCCCchHHHHHHHHHhCCCeeeCchhhhhccCCCCchHHHHHHHH
Q 030464           79 VHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAV  131 (177)
Q Consensus        79 ~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~dLlr~el~~~s~lgk~i~~~l  131 (177)
                      --|.++|.+||||||+++.|++ +|+++|+.+.+.++.+.......+.+.+..
T Consensus        10 ~~iglTGgigsGKStv~~~l~~-~g~~vidaD~ia~~l~~~~~~~~~~i~~~f   61 (210)
T 4i1u_A           10 YAIGLTGGIGSGKTTVADLFAA-RGASLVDTDLIAHRITAPAGLAMPAIEQTF   61 (210)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHH-TTCEEEEHHHHHHHHTSTTCTTHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH-CCCcEEECcHHHHHHhcCCcHHHHHHHHHh
Confidence            4588999999999999999988 999999999999988877666555555443

>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*

Probab=98.20  E-value=8.3e-07  Score=68.39  Aligned_cols=30  Identities=23%  Similarity=0.215  Sum_probs=27.2

Q ss_pred             eEEEEEcCCCCCchHHHHHHHHHhCCCeee
Q 030464           79 VHWAFIGSPRAKKHVYAEMLSKLLEVPRIS  108 (177)
Q Consensus        79 ~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is  108 (177)
                      +.|+|+|+|||||||+++.|++.++..++.
T Consensus         1 ~~I~i~G~~GsGKsT~~~~L~~~l~~~~~~   30 (205)
T 2jaq_A            1 MKIAIFGTVGAGKSTISAEISKKLGYEIFK   30 (205)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHHCCEEEC
T ss_pred             CEEEEECCCccCHHHHHHHHHHhcCCcEEc
Confidence            468999999999999999999999987764

>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*

Probab=98.11  E-value=2.2e-06  Score=65.66  Aligned_cols=41  Identities=24%  Similarity=0.322  Sum_probs=33.3

Q ss_pred             CCCeEEEEEcCCCCCchHHHHHHHHHh---CCCeeeCc-hhhhhc
Q 030464           76 RRGVHWAFIGSPRAKKHVYAEMLSKLL---EVPRISMS-SIVRQD  116 (177)
Q Consensus        76 ~~~~~IlIiGpPGSGKSTlA~~LAk~l---gl~~Is~~-dLlr~e  116 (177)
                      .++..|+|+|++||||||+++.|++.+   |++++.++ +.++..
T Consensus         3 ~~g~~i~l~G~~GsGKST~~~~L~~~l~~~g~~~i~~d~~~~~~~   47 (179)
T 2pez_A            3 MRGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNIRQG   47 (179)
T ss_dssp             -CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHTTT
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHHhhCCCcEEEECChHHHHH
Confidence            357789999999999999999999988   98888664 455543

>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25

Probab=98.08  E-value=2.3e-06  Score=65.70  Aligned_cols=39  Identities=26%  Similarity=0.308  Sum_probs=31.5

Q ss_pred             CCCeEEEEEcCCCCCchHHHHHHHHHhCCC--eeeCchhhh
Q 030464           76 RRGVHWAFIGSPRAKKHVYAEMLSKLLEVP--RISMSSIVR  114 (177)
Q Consensus        76 ~~~~~IlIiGpPGSGKSTlA~~LAk~lgl~--~Is~~dLlr  114 (177)
                      .++..|+|+|+|||||||+++.|++.++..  +++.+++..
T Consensus         7 ~~g~~i~l~G~~GsGKSTl~~~La~~~~~g~i~i~~d~~~~   47 (191)
T 1zp6_A            7 LGGNILLLSGHPGSGKSTIAEALANLPGVPKVHFHSDDLWG   47 (191)
T ss_dssp             CTTEEEEEEECTTSCHHHHHHHHHTCSSSCEEEECTTHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHhccCCCeEEEcccchhh
Confidence            466789999999999999999999987555  666666543

>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A

Probab=98.05  E-value=2.2e-06  Score=73.86  Aligned_cols=36  Identities=25%  Similarity=0.191  Sum_probs=32.7

Q ss_pred             CeEEEEEcCCCCCchHHHHHHHHHhCCCeeeCchhh
Q 030464           78 GVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIV  113 (177)
Q Consensus        78 ~~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~dLl  113 (177)
                      +..|+|+||+||||||+|+.||+.++..+|+++++.
T Consensus         5 ~~~i~i~GptGsGKTtla~~La~~l~~~iis~Ds~q   40 (323)
T 3crm_A            5 PPAIFLMGPTAAGKTDLAMALADALPCELISVDSAL   40 (323)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHHHSCEEEEEECTTT
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHcCCcEEeccchh
Confidence            357999999999999999999999999999998753

>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6

Probab=98.03  E-value=1.6e-06  Score=72.95  Aligned_cols=38  Identities=13%  Similarity=0.152  Sum_probs=31.4

Q ss_pred             CCeEEEEEcCCCCCchHHHHHHHHHhC-----CCeeeCchhhh
Q 030464           77 RGVHWAFIGSPRAKKHVYAEMLSKLLE-----VPRISMSSIVR  114 (177)
Q Consensus        77 ~~~~IlIiGpPGSGKSTlA~~LAk~lg-----l~~Is~~dLlr  114 (177)
                      +++.|.|.|++||||||+|+.|++.+|     +.+|+++++.+
T Consensus         4 ~~~iIgItG~sGSGKSTva~~L~~~lg~~~~~~~vI~~D~~~r   46 (290)
T 1a7j_A            4 KHPIISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIEGDAFHR   46 (290)
T ss_dssp             TSCEEEEESCC---CCTHHHHHHHHHHHHTCCEEEEEGGGGBS
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHHHhhcCCCeeEeecchhhc
Confidence            566799999999999999999999887     78999999876

>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*

Probab=98.02  E-value=1.1e-05  Score=65.16  Aligned_cols=55  Identities=16%  Similarity=0.122  Sum_probs=40.5

Q ss_pred             CCeEEEEEcCCCCCchHHHHHHHHHhCCCeeeCchhhhhccCCCCchHHHHHHHHHc
Q 030464           77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNR  133 (177)
Q Consensus        77 ~~~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~dLlr~el~~~s~lgk~i~~~l~~  133 (177)
                      +++.|+|.|++||||||+++.|++.+.-..++...+.++  ...+++|+.+++.+..
T Consensus         2 ~g~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~~v~~~re--p~~t~~g~~ir~~l~~   56 (213)
T 4tmk_A            2 RSKYIVIEGLEGAGKTTARNVVVETLEQLGIRDMVFTRE--PGGTQLAEKLRSLLLD   56 (213)
T ss_dssp             CCCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEES--SCSSHHHHHHHHHHHS
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCCcceeeeC--CCCCHHHHHHHHHHhc
Confidence            567899999999999999999999874333311122232  2467899999999873

>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*

Probab=98.01  E-value=2.8e-05  Score=62.19  Aligned_cols=56  Identities=14%  Similarity=0.086  Sum_probs=41.9

Q ss_pred             eEEEEEcCCCCCchHHHHHHHHHh--CCCeeeCchhhhhccCCCCchHHHHHHHHHcCCcchHH
Q 030464           79 VHWAFIGSPRAKKHVYAEMLSKLL--EVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSED  140 (177)
Q Consensus        79 ~~IlIiGpPGSGKSTlA~~LAk~l--gl~~Is~~dLlr~el~~~s~lgk~i~~~l~~G~~Ipde  140 (177)
                      .=|+|-|+.||||||+++.|++.+  |+.++.+.      -...+++++.+++.+..+..++..
T Consensus         3 kFI~~EG~dGsGKsTq~~~L~~~L~~~~~v~~~~------eP~~t~~g~~ir~~l~~~~~~~~~   60 (205)
T 4hlc_A            3 AFITFEGPEGSGKTTVINEVYHRLVKDYDVIMTR------EPGGVPTGEEIRKIVLEGNDMDIR   60 (205)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHHHTTTSCEEEEE------SSTTCHHHHHHHHHHHSSCCCCHH
T ss_pred             CEEEEECCCCCcHHHHHHHHHHHHHCCCCEEEee------CCCCChHHHHHHHHHhcccCCCHH
Confidence            357888999999999999999988  44443321      124578899999998888766543

>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*

Probab=98.00  E-value=4.5e-06  Score=65.35  Aligned_cols=37  Identities=16%  Similarity=0.171  Sum_probs=30.8

Q ss_pred             CCCeEEEEEcCCCCCchHHHHHHHHHh---CCC--eeeCchh
Q 030464           76 RRGVHWAFIGSPRAKKHVYAEMLSKLL---EVP--RISMSSI  112 (177)
Q Consensus        76 ~~~~~IlIiGpPGSGKSTlA~~LAk~l---gl~--~Is~~dL  112 (177)
                      .++..|+|+|++||||||+++.|++.+   |..  +++.+++
T Consensus        23 ~~g~~i~l~G~sGsGKSTl~~~La~~l~~~G~~~~~~d~d~~   64 (200)
T 3uie_A           23 QKGCVIWVTGLSGSGKSTLACALNQMLYQKGKLCYILDGDNV   64 (200)
T ss_dssp             SCCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEecCchh
Confidence            467789999999999999999999998   665  7775443

>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*

Probab=97.98  E-value=1.1e-05  Score=65.56  Aligned_cols=54  Identities=17%  Similarity=0.189  Sum_probs=43.2

Q ss_pred             CCeEEEEEcCCCCCchHHHHHHHHHhCCCeeeCchhhhhccCCCCchHHHHHHHHHcCC
Q 030464           77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGE  135 (177)
Q Consensus        77 ~~~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~dLlr~el~~~s~lgk~i~~~l~~G~  135 (177)
                      +++.|+|.|++||||||+++.|++.++..    ..+++.. ...+++|+.+++++....
T Consensus         4 ~g~~i~~eG~~g~GKst~~~~l~~~l~~~----~~~~~ep-~~~t~~g~~ir~~l~~~~   57 (216)
T 3tmk_A            4 RGKLILIEGLDRTGKTTQCNILYKKLQPN----CKLLKFP-ERSTRIGGLINEYLTDDS   57 (216)
T ss_dssp             CCCEEEEEECSSSSHHHHHHHHHHHHCSS----EEEEESS-CTTSHHHHHHHHHHHCTT
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHhccc----ceEEEec-CCCChHHHHHHHHHHhcc
Confidence            67889999999999999999999999873    2334432 346889999999988754

>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}

Probab=97.96  E-value=3.2e-06  Score=65.08  Aligned_cols=42  Identities=26%  Similarity=0.377  Sum_probs=31.7

Q ss_pred             CCCeEEEEEcCCCCCchHHHHHHHHHhC-----CCeeeCchhhhhccC
Q 030464           76 RRGVHWAFIGSPRAKKHVYAEMLSKLLE-----VPRISMSSIVRQDLS  118 (177)
Q Consensus        76 ~~~~~IlIiGpPGSGKSTlA~~LAk~lg-----l~~Is~~dLlr~el~  118 (177)
                      .++..|+|+|+|||||||+++.|++.++     +.+++ +|.++..+.
T Consensus        11 ~~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~-~d~~~~~~~   57 (186)
T 2yvu_A           11 EKGIVVWLTGLPGSGKTTIATRLADLLQKEGYRVEVLD-GDWARTTVS   57 (186)
T ss_dssp             SCCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEE-HHHHHTTTT
T ss_pred             CCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEee-HHHHHHHHh
Confidence            3678899999999999999999999874     23455 355555443

>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}

Probab=97.94  E-value=3.6e-06  Score=73.04  Aligned_cols=36  Identities=11%  Similarity=0.142  Sum_probs=33.2

Q ss_pred             CCeEEEEEcCCCCCchHHHHHHHHHhCCCeeeCchh
Q 030464           77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSI  112 (177)
Q Consensus        77 ~~~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~dL  112 (177)
                      ++..|+|+||+|||||+++..||++++..+||.+.+
T Consensus        39 ~~~lIvI~GPTgsGKTtLa~~LA~~l~~eiIs~Ds~   74 (339)
T 3a8t_A           39 KEKLLVLMGATGTGKSRLSIDLAAHFPLEVINSDKM   74 (339)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHTTSCEEEEECCSS
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHCCCcEEccccc
Confidence            456899999999999999999999999999999876

>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A

Probab=97.93  E-value=6.3e-06  Score=68.84  Aligned_cols=35  Identities=17%  Similarity=0.212  Sum_probs=29.6

Q ss_pred             CCCeEEEEEcCCCCCchHHHHHHHHHhCCCeeeCc
Q 030464           76 RRGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMS  110 (177)
Q Consensus        76 ~~~~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~  110 (177)
                      ..+..++|.||||+|||++|+.||+.+|.+++.+.
T Consensus        34 ~~p~~lLl~GppGtGKT~la~aiA~~l~~~~i~v~   68 (293)
T 3t15_A           34 KVPLILGIWGGKGQGKSFQCELVFRKMGINPIMMS   68 (293)
T ss_dssp             CCCSEEEEEECTTSCHHHHHHHHHHHHTCCCEEEE
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHhCCCEEEEe
Confidence            45567888899999999999999999998766553

>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}

Probab=97.90  E-value=6.2e-06  Score=71.52  Aligned_cols=34  Identities=18%  Similarity=0.131  Sum_probs=32.1

Q ss_pred             eEEEEEcCCCCCchHHHHHHHHHhCCCeeeCchh
Q 030464           79 VHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSI  112 (177)
Q Consensus        79 ~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~dL  112 (177)
                      ..|+|+||+||||||+|..|++.++..+|++|++
T Consensus         8 ~lI~I~GptgSGKTtla~~La~~l~~~iis~Ds~   41 (340)
T 3d3q_A            8 FLIVIVGPTASGKTELSIEVAKKFNGEIISGDSM   41 (340)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHTTEEEEECCSS
T ss_pred             ceEEEECCCcCcHHHHHHHHHHHcCCceeccccc
Confidence            5789999999999999999999999999999987

>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*

Probab=97.87  E-value=6e-06  Score=64.55  Aligned_cols=39  Identities=18%  Similarity=0.257  Sum_probs=33.5

Q ss_pred             CCCeEEEEEcCCCCCchHHHHHHHHHhC--CCeeeCchhhh
Q 030464           76 RRGVHWAFIGSPRAKKHVYAEMLSKLLE--VPRISMSSIVR  114 (177)
Q Consensus        76 ~~~~~IlIiGpPGSGKSTlA~~LAk~lg--l~~Is~~dLlr  114 (177)
                      .++..|.|+|++||||||+++.|+..++  +.+++.+..++
T Consensus         4 ~~~~~i~i~G~~GsGKSTl~~~l~~~~~~~i~~v~~d~~~~   44 (211)
T 3asz_A            4 PKPFVIGIAGGTASGKTTLAQALARTLGERVALLPMDHYYK   44 (211)
T ss_dssp             -CCEEEEEEESTTSSHHHHHHHHHHHHGGGEEEEEGGGCBC
T ss_pred             CCcEEEEEECCCCCCHHHHHHHHHHHhCCCeEEEecCcccc
Confidence            3567899999999999999999999988  88888877654

>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*

Probab=97.87  E-value=4.4e-05  Score=58.31  Aligned_cols=39  Identities=21%  Similarity=0.221  Sum_probs=31.0

Q ss_pred             CCeEEEEEcCCCCCchHHHHHHHHHh----C--CCeeeCchhhhh
Q 030464           77 RGVHWAFIGSPRAKKHVYAEMLSKLL----E--VPRISMSSIVRQ  115 (177)
Q Consensus        77 ~~~~IlIiGpPGSGKSTlA~~LAk~l----g--l~~Is~~dLlr~  115 (177)
                      ++..++|+||||+||||+++.++..+    |  +.+++..+++..
T Consensus        37 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~~~~~~~~~~   81 (180)
T 3ec2_A           37 EGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYFFDTKDLIFR   81 (180)
T ss_dssp             GCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCEEEHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEEEEHHHHHHH
Confidence            46779999999999999999998765    4  456777666654

>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}

Probab=97.87  E-value=2.4e-05  Score=63.88  Aligned_cols=66  Identities=12%  Similarity=0.189  Sum_probs=40.0

Q ss_pred             ccccCccCcccCCCeEEEEEcCCCCCchHHHHHHHHHhCC-CeeeCchhhhhccCCCCchHHHHHHHHHc
Q 030464           65 VTLPDTEGRERRRGVHWAFIGSPRAKKHVYAEMLSKLLEV-PRISMSSIVRQDLSPRSSLHKQIANAVNR  133 (177)
Q Consensus        65 ~~~~~~~~~~~~~~~~IlIiGpPGSGKSTlA~~LAk~lgl-~~Is~~dLlr~el~~~s~lgk~i~~~l~~  133 (177)
                      +..+++.... .+++.|+|.|++||||||+++.|++.++. ..+++--+.+.  ...+++++.+++++..
T Consensus         9 ~~~~~~~~~~-~~~~~i~~~G~~g~GKst~~~~l~~~l~~~~g~~v~~~tre--P~~t~~g~~ir~~l~~   75 (223)
T 3ld9_A            9 MGTLEAQTQG-PGSMFITFEGIDGSGKTTQSHLLAEYLSEIYGVNNVVLTRE--PGGTLLNESVRNLLFK   75 (223)
T ss_dssp             -----------CCCEEEEEECSTTSSHHHHHHHHHHHHHHHHCGGGEEEEES--SCSSHHHHHHHHHHHT
T ss_pred             cccccccccC-CCCeEEEEECCCCCCHHHHHHHHHHHHhhccCceeeEeeeC--CCCChHHHHHHHHHhC
Confidence            4444444443 47889999999999999999999998765 33322111122  2356788888888765

>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A

Probab=97.87  E-value=8e-06  Score=70.47  Aligned_cols=36  Identities=28%  Similarity=0.220  Sum_probs=33.1

Q ss_pred             CCeEEEEEcCCCCCchHHHHHHHHHhCCCeeeCchh
Q 030464           77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSI  112 (177)
Q Consensus        77 ~~~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~dL  112 (177)
                      +++.|+|+||+|||||+++..||+.++..+||.+.+
T Consensus         2 ~~~~i~i~GptgsGKt~la~~La~~~~~~iis~Ds~   37 (322)
T 3exa_A            2 KEKLVAIVGPTAVGKTKTSVMLAKRLNGEVISGDSM   37 (322)
T ss_dssp             CCEEEEEECCTTSCHHHHHHHHHHTTTEEEEECCGG
T ss_pred             CCcEEEEECCCcCCHHHHHHHHHHhCccceeecCcc
Confidence            456789999999999999999999999999999876

>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A

Probab=97.86  E-value=2.9e-05  Score=68.95  Aligned_cols=31  Identities=16%  Similarity=0.206  Sum_probs=26.2

Q ss_pred             CCCeEEEEEcCCCCCchHHHHHHHHHhCCCe
Q 030464           76 RRGVHWAFIGSPRAKKHVYAEMLSKLLEVPR  106 (177)
Q Consensus        76 ~~~~~IlIiGpPGSGKSTlA~~LAk~lgl~~  106 (177)
                      .++..|+|+|.|||||||++++|++.++...
T Consensus        37 ~~~~~IvlvGlpGsGKSTia~~La~~l~~~~   67 (469)
T 1bif_A           37 NCPTLIVMVGLPARGKTYISKKLTRYLNFIG   67 (469)
T ss_dssp             -CCEEEEEECCTTSSHHHHHHHHHHHHHHTT
T ss_pred             CCcEEEEEECCCCCCHHHHHHHHHHHHhccC
Confidence            4668899999999999999999999876443

>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}

Probab=97.81  E-value=3.7e-05  Score=70.14  Aligned_cols=42  Identities=31%  Similarity=0.453  Sum_probs=33.2

Q ss_pred             CCeEEEEEcCCCCCchHHHHHHHHHhCC-----CeeeCchhhhhccCC
Q 030464           77 RGVHWAFIGSPRAKKHVYAEMLSKLLEV-----PRISMSSIVRQDLSP  119 (177)
Q Consensus        77 ~~~~IlIiGpPGSGKSTlA~~LAk~lgl-----~~Is~~dLlr~el~~  119 (177)
                      .+..|+|+|+|||||||+|+.|++.++.     .+++ +|.++..+..
T Consensus       371 ~~~~I~l~G~~GsGKSTia~~La~~L~~~G~~~~~ld-~D~ir~~l~~  417 (546)
T 2gks_A          371 QGFCVWLTGLPCAGKSTIAEILATMLQARGRKVTLLD-GDVVRTHLSR  417 (546)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEC-HHHHHHHTCT
T ss_pred             cceEEEccCCCCCCHHHHHHHHHHHhhhcCCeEEEEC-chHhhhhhcc
Confidence            3578999999999999999999998763     5566 4667766543

>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*

Probab=97.81  E-value=1.7e-05  Score=73.80  Aligned_cols=43  Identities=26%  Similarity=0.333  Sum_probs=36.6

Q ss_pred             CCCeEEEEEcCCCCCchHHHHHHHHHh---CCCeeeCc-hhhhhccC
Q 030464           76 RRGVHWAFIGSPRAKKHVYAEMLSKLL---EVPRISMS-SIVRQDLS  118 (177)
Q Consensus        76 ~~~~~IlIiGpPGSGKSTlA~~LAk~l---gl~~Is~~-dLlr~el~  118 (177)
                      .++..|+|+|.|||||||+|+.|++.+   |++++.++ +.+|..+.
T Consensus        50 ~~g~lIvLtGlsGSGKSTlAr~La~~L~~~G~~~v~lDgD~iR~~L~   96 (630)
T 1x6v_B           50 FRGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNIRQGLN   96 (630)
T ss_dssp             CCCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEESHHHHTTTTT
T ss_pred             CCCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEechHHhhhccC
Confidence            367889999999999999999999999   99888775 67776554

>1dek_A Deoxynucleoside monophosphate kinase; transferase, phosphotransferase; HET: DGP; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1 PDB: 1del_A*

Probab=97.81  E-value=1e-05  Score=66.77  Aligned_cols=39  Identities=13%  Similarity=0.189  Sum_probs=34.9

Q ss_pred             eEEEEEcCCCCCchHHHHHHHHHhCCCeeeCchhhhhcc
Q 030464           79 VHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDL  117 (177)
Q Consensus        79 ~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~dLlr~el  117 (177)
                      +.|.|+|++||||||+|+.|++.+|++++++++-+++++
T Consensus         2 ~~i~ltG~~~sGK~tv~~~l~~~~g~~~~~~~~~~~~~~   40 (241)
T 1dek_A            2 KLIFLSGVKRSGKDTTADFIMSNYSAVKYQLAGPIKDAL   40 (241)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHSCEEECCTTHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHhcCCeEEecChHHHHHH
Confidence            578999999999999999999999999999998776643

>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A

Probab=97.81  E-value=1.3e-05  Score=69.06  Aligned_cols=36  Identities=28%  Similarity=0.233  Sum_probs=32.5

Q ss_pred             CCeEEEEEcCCCCCchHHHHHHHHHhCCCeeeCchh
Q 030464           77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSI  112 (177)
Q Consensus        77 ~~~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~dL  112 (177)
                      .+..|+|+||+|||||++|..||+.++..+||.+.+
T Consensus         9 ~~~~i~i~GptgsGKt~la~~La~~~~~~iis~Ds~   44 (316)
T 3foz_A            9 LPKAIFLMGPTASGKTALAIELRKILPVELISVDSA   44 (316)
T ss_dssp             CCEEEEEECCTTSCHHHHHHHHHHHSCEEEEECCTT
T ss_pred             CCcEEEEECCCccCHHHHHHHHHHhCCCcEEecccc
Confidence            456789999999999999999999999999998863

>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25

Probab=97.78  E-value=1.3e-05  Score=61.69  Aligned_cols=36  Identities=17%  Similarity=0.135  Sum_probs=29.3

Q ss_pred             eEEEEEcCCCCCchHHHHHHHHHhCC-CeeeCchhhh
Q 030464           79 VHWAFIGSPRAKKHVYAEMLSKLLEV-PRISMSSIVR  114 (177)
Q Consensus        79 ~~IlIiGpPGSGKSTlA~~LAk~lgl-~~Is~~dLlr  114 (177)
                      ..|+|+|++||||||+++.|++.++. .+++.+++.+
T Consensus         3 ~ii~l~G~~GaGKSTl~~~L~~~~~g~~~i~~d~~~~   39 (189)
T 2bdt_A            3 KLYIITGPAGVGKSTTCKRLAAQLDNSAYIEGDIINH   39 (189)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHSSSEEEEEHHHHHT
T ss_pred             eEEEEECCCCCcHHHHHHHHhcccCCeEEEcccchhh
Confidence            46889999999999999999987765 6777665543

>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}

Probab=97.77  E-value=1.8e-05  Score=63.36  Aligned_cols=33  Identities=21%  Similarity=0.311  Sum_probs=28.3

Q ss_pred             CCeEEEEEcCCCCCchHHHHHHHHHhCCCeeeC
Q 030464           77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISM  109 (177)
Q Consensus        77 ~~~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~  109 (177)
                      .+..|+|.||||+|||++|+.+++.++.+++.+
T Consensus        38 ~~~~vll~G~~GtGKT~la~~la~~~~~~~~~~   70 (262)
T 2qz4_A           38 VPKGALLLGPPGCGKTLLAKAVATEAQVPFLAM   70 (262)
T ss_dssp             CCCEEEEESCTTSSHHHHHHHHHHHHTCCEEEE
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHhCCCEEEe
Confidence            345689999999999999999999998876654

>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C

Probab=97.76  E-value=8.3e-05  Score=62.43  Aligned_cols=34  Identities=18%  Similarity=0.145  Sum_probs=29.6

Q ss_pred             CCeEEEEEcCCCCCchHHHHHHHHHhCCCeeeCc
Q 030464           77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMS  110 (177)
Q Consensus        77 ~~~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~  110 (177)
                      .+..|+|.||||+|||++|+.+++..+.+++.+.
T Consensus        50 ~~~~vLl~GppGtGKT~la~aia~~~~~~~~~v~   83 (322)
T 3eie_A           50 PTSGILLYGPPGTGKSYLAKAVATEANSTFFSVS   83 (322)
T ss_dssp             CCCEEEEECSSSSCHHHHHHHHHHHHTCEEEEEE
T ss_pred             CCCeEEEECCCCCcHHHHHHHHHHHHCCCEEEEc
Confidence            3567999999999999999999999998876654

>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20

Probab=97.75  E-value=2e-05  Score=63.60  Aligned_cols=32  Identities=19%  Similarity=0.311  Sum_probs=27.5

Q ss_pred             CeEEEEEcCCCCCchHHHHHHHHHhCCCeeeC
Q 030464           78 GVHWAFIGSPRAKKHVYAEMLSKLLEVPRISM  109 (177)
Q Consensus        78 ~~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~  109 (177)
                      +..|+|+||||+||||+|+.|+..++.+++.+
T Consensus        45 ~~~vll~G~~GtGKT~la~~la~~~~~~~~~i   76 (257)
T 1lv7_A           45 PKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTI   76 (257)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHHHTCCEEEE
T ss_pred             CCeEEEECcCCCCHHHHHHHHHHHcCCCEEEE
Confidence            34599999999999999999999998776554

>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*

Probab=97.73  E-value=2.2e-05  Score=63.38  Aligned_cols=39  Identities=15%  Similarity=0.049  Sum_probs=27.5

Q ss_pred             ccCccCcccCCCeEEEEEcCCCCCchHHHHHHHHHhCCC
Q 030464           67 LPDTEGRERRRGVHWAFIGSPRAKKHVYAEMLSKLLEVP  105 (177)
Q Consensus        67 ~~~~~~~~~~~~~~IlIiGpPGSGKSTlA~~LAk~lgl~  105 (177)
                      .++.......++..|.|+||.||||||+++.|+..+|..
T Consensus        14 ~l~~isl~i~~g~iigI~G~~GsGKSTl~k~L~~~lG~~   52 (245)
T 2jeo_A           14 GTENLYFQSMRPFLIGVSGGTASGKSTVCEKIMELLGQN   52 (245)
T ss_dssp             ---------CCSEEEEEECSTTSSHHHHHHHHHHHHTGG
T ss_pred             eecceeccCCCCEEEEEECCCCCCHHHHHHHHHHHhchh
Confidence            344445555678889999999999999999999988865

>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=97.70  E-value=2e-05  Score=70.26  Aligned_cols=38  Identities=13%  Similarity=0.174  Sum_probs=31.6

Q ss_pred             CCeEEEEEcCCCCCchHHHHHHHHHhCCCeeeCc--hhhh
Q 030464           77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMS--SIVR  114 (177)
Q Consensus        77 ~~~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~--dLlr  114 (177)
                      .+..|++.||||+|||.+|+++|...|++++.+.  +++.
T Consensus       214 ~prGvLLyGPPGTGKTllAkAiA~e~~~~f~~v~~s~l~~  253 (434)
T 4b4t_M          214 APKGALMYGPPGTGKTLLARACAAQTNATFLKLAAPQLVQ  253 (434)
T ss_dssp             CCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGGGCS
T ss_pred             CCCeeEEECcCCCCHHHHHHHHHHHhCCCEEEEehhhhhh
Confidence            4567999999999999999999999998866654  4443

>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}

Probab=97.70  E-value=1.9e-05  Score=61.01  Aligned_cols=26  Identities=12%  Similarity=0.100  Sum_probs=23.7

Q ss_pred             CCeEEEEEcCCCCCchHHHHHHHHHh
Q 030464           77 RGVHWAFIGSPRAKKHVYAEMLSKLL  102 (177)
Q Consensus        77 ~~~~IlIiGpPGSGKSTlA~~LAk~l  102 (177)
                      ++..|+|+|++||||||+++.|++.+
T Consensus         5 ~g~~i~l~G~~GsGKSTl~~~L~~~~   30 (207)
T 2j41_A            5 KGLLIVLSGPSGVGKGTVRKRIFEDP   30 (207)
T ss_dssp             CCCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHhh
Confidence            56789999999999999999999876

>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*

Probab=97.69  E-value=1.5e-05  Score=65.58  Aligned_cols=26  Identities=31%  Similarity=0.471  Sum_probs=23.5

Q ss_pred             CCeEEEEEcCCCCCchHHHHHHHHHh
Q 030464           77 RGVHWAFIGSPRAKKHVYAEMLSKLL  102 (177)
Q Consensus        77 ~~~~IlIiGpPGSGKSTlA~~LAk~l  102 (177)
                      .+..++|.||||+|||++|+.+++.+
T Consensus        66 ~~~~vll~G~~GtGKT~la~~la~~l   91 (309)
T 3syl_A           66 PTLHMSFTGNPGTGKTTVALKMAGLL   91 (309)
T ss_dssp             CCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHH
Confidence            45579999999999999999999987

>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}

Probab=97.68  E-value=2.2e-05  Score=60.63  Aligned_cols=28  Identities=18%  Similarity=0.165  Sum_probs=24.5

Q ss_pred             CCCeEEEEEcCCCCCchHHHHHHHHHhC
Q 030464           76 RRGVHWAFIGSPRAKKHVYAEMLSKLLE  103 (177)
Q Consensus        76 ~~~~~IlIiGpPGSGKSTlA~~LAk~lg  103 (177)
                      .++..|.|+||+||||||+++.|+..+.
T Consensus         5 ~~g~ii~l~Gp~GsGKSTl~~~L~~~~~   32 (205)
T 3tr0_A            5 NKANLFIISAPSGAGKTSLVRALVKALA   32 (205)
T ss_dssp             CCCCEEEEECCTTSCHHHHHHHHHHHSS
T ss_pred             CCCcEEEEECcCCCCHHHHHHHHHhhCC
Confidence            3566899999999999999999998764

>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}

Probab=97.67  E-value=2.6e-05  Score=63.48  Aligned_cols=33  Identities=15%  Similarity=0.160  Sum_probs=28.8

Q ss_pred             CCeEEEEEcCCCCCchHHHHHHHHHhCCCeeeC
Q 030464           77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISM  109 (177)
Q Consensus        77 ~~~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~  109 (177)
                      .+..++|.||||+|||++|+.+++.++.+++.+
T Consensus        50 ~~~~~ll~G~~GtGKT~la~~la~~~~~~~~~v   82 (285)
T 3h4m_A           50 PPKGILLYGPPGTGKTLLAKAVATETNATFIRV   82 (285)
T ss_dssp             CCSEEEEESSSSSSHHHHHHHHHHHTTCEEEEE
T ss_pred             CCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEE
Confidence            455699999999999999999999998876654

>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}

Probab=97.67  E-value=2.7e-05  Score=61.26  Aligned_cols=38  Identities=18%  Similarity=0.239  Sum_probs=31.5

Q ss_pred             cCCCeEEEEEcCCCCCchHHHHHHHHHhC-----CCeeeCchh
Q 030464           75 RRRGVHWAFIGSPRAKKHVYAEMLSKLLE-----VPRISMSSI  112 (177)
Q Consensus        75 ~~~~~~IlIiGpPGSGKSTlA~~LAk~lg-----l~~Is~~dL  112 (177)
                      ..++..|.|+||+||||||+++.|+..+.     ..+|++++.
T Consensus        19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~g~~~g~v~~d~~   61 (208)
T 3c8u_A           19 QPGRQLVALSGAPGSGKSTLSNPLAAALSAQGLPAEVVPMDGF   61 (208)
T ss_dssp             CCSCEEEEEECCTTSCTHHHHHHHHHHHHHTTCCEEEEESGGG
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCceEEEecCCC
Confidence            35678899999999999999999999875     567777653

>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=97.67  E-value=2.5e-05  Score=69.52  Aligned_cols=34  Identities=12%  Similarity=0.147  Sum_probs=29.5

Q ss_pred             CCeEEEEEcCCCCCchHHHHHHHHHhCCCeeeCc
Q 030464           77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMS  110 (177)
Q Consensus        77 ~~~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~  110 (177)
                      .+.-|++.||||+|||.+|+++|..+|++++.+.
T Consensus       205 ~prGiLL~GPPGtGKT~lakAiA~~~~~~~~~v~  238 (428)
T 4b4t_K          205 PPRGVLLYGPPGTGKTMLVKAVANSTKAAFIRVN  238 (428)
T ss_dssp             CCCEEEEESCTTTTHHHHHHHHHHHHTCEEEEEE
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEe
Confidence            3456999999999999999999999998877664

>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}

Probab=97.66  E-value=2.7e-05  Score=63.88  Aligned_cols=37  Identities=16%  Similarity=0.208  Sum_probs=29.9

Q ss_pred             CCeEEEEEcCCCCCchHHHHHHHHHhCCCee--eCchhh
Q 030464           77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRI--SMSSIV  113 (177)
Q Consensus        77 ~~~~IlIiGpPGSGKSTlA~~LAk~lgl~~I--s~~dLl  113 (177)
                      .+..++|.||||+|||++|+.+++.++.+++  +..++.
T Consensus        53 ~~~~vll~Gp~GtGKT~la~~la~~~~~~~~~i~~~~l~   91 (297)
T 3b9p_A           53 PAKGLLLFGPPGNGKTLLARAVATECSATFLNISAASLT   91 (297)
T ss_dssp             CCSEEEEESSSSSCHHHHHHHHHHHTTCEEEEEESTTTS
T ss_pred             CCCeEEEECcCCCCHHHHHHHHHHHhCCCeEEeeHHHHh
Confidence            3567999999999999999999999987654  444443

>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=97.66  E-value=2.6e-05  Score=69.68  Aligned_cols=34  Identities=15%  Similarity=0.120  Sum_probs=29.7

Q ss_pred             CCeEEEEEcCCCCCchHHHHHHHHHhCCCeeeCc
Q 030464           77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMS  110 (177)
Q Consensus        77 ~~~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~  110 (177)
                      .+.-|++.||||+|||.+|+++|..+|++++.+.
T Consensus       214 ~prGvLL~GPPGtGKTllAkAiA~e~~~~~~~v~  247 (437)
T 4b4t_L          214 PPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSP  247 (437)
T ss_dssp             CCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEE
T ss_pred             CCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEe
Confidence            4567999999999999999999999998876653

>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}

Probab=97.65  E-value=0.0002  Score=56.64  Aligned_cols=55  Identities=16%  Similarity=0.164  Sum_probs=41.1

Q ss_pred             EEEEEcCCCCCchHHHHHHHHHh---CCCeeeCchhhhhccCCCCchHHHHHHHHHcCCcchHH
Q 030464           80 HWAFIGSPRAKKHVYAEMLSKLL---EVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSED  140 (177)
Q Consensus        80 ~IlIiGpPGSGKSTlA~~LAk~l---gl~~Is~~dLlr~el~~~s~lgk~i~~~l~~G~~Ipde  140 (177)
                      -|+|-|+.||||||+++.|++.+   |+.++.+.+      ...+..++.+++.+..+..-|..
T Consensus         2 fI~~EG~DGsGKsTq~~~L~~~L~~~g~~v~~tre------P~~t~~~~~ir~~l~~~~~~~~~   59 (197)
T 3hjn_A            2 FITFEGIDGSGKSTQIQLLAQYLEKRGKKVILKRE------PGGTETGEKIRKILLEEEVTPKA   59 (197)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEES------SCSSHHHHHHHHHHHHSCCCHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEC------CCCCcHHHHHHHHhhcccCChHH
Confidence            47889999999999999999876   666655431      24567788888887776655543

>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*

Probab=97.65  E-value=3.4e-05  Score=62.80  Aligned_cols=33  Identities=21%  Similarity=0.252  Sum_probs=29.2

Q ss_pred             CCeEEEEEcCCCCCchHHHHHHHHHhCCCeeeC
Q 030464           77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISM  109 (177)
Q Consensus        77 ~~~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~  109 (177)
                      .+..++|.||||+|||++|+.+++..+.+++.+
T Consensus        63 ~~~~vLl~G~~GtGKT~la~~ia~~~~~~~~~i   95 (272)
T 1d2n_A           63 PLVSVLLEGPPHSGKTALAAKIAEESNFPFIKI   95 (272)
T ss_dssp             SEEEEEEECSTTSSHHHHHHHHHHHHTCSEEEE
T ss_pred             CCeEEEEECCCCCcHHHHHHHHHHHhCCCEEEE
Confidence            456799999999999999999999999887655

>3ch4_B Pmkase, phosphomevalonate kinase; parallel beta-sheet with the strand order 23145, walker A motif, cholesterol biosynthesis, lipid synthesis; 1.76A {Homo sapiens}

Probab=97.65  E-value=2.9e-05  Score=62.79  Aligned_cols=39  Identities=18%  Similarity=0.267  Sum_probs=34.4

Q ss_pred             CCeEEEEEcCCCCCchHHHHHHHHHhC---CCeeeCchhhhh
Q 030464           77 RGVHWAFIGSPRAKKHVYAEMLSKLLE---VPRISMSSIVRQ  115 (177)
Q Consensus        77 ~~~~IlIiGpPGSGKSTlA~~LAk~lg---l~~Is~~dLlr~  115 (177)
                      .++.|+|+|.|||||+|+|+.+.+.+|   ++.++++|.++.
T Consensus        10 ~~~II~itGk~~SGKd~va~~l~~~~g~~~~~vv~msD~iK~   51 (202)
T 3ch4_B           10 PRLVLLFSGKRKSGKDFVTEALQSRLGADVCAVLRLSGPLKE   51 (202)
T ss_dssp             CSEEEEEEECTTSSHHHHHHHHHHHHCTTTEEEECTHHHHHH
T ss_pred             CCEEEEEECCCCCChHHHHHHHHHHcCCCCceEEEccHHHHH
Confidence            456888999999999999999988784   778999999985

>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=97.64  E-value=2.4e-05  Score=69.37  Aligned_cols=34  Identities=18%  Similarity=0.212  Sum_probs=29.9

Q ss_pred             CCeEEEEEcCCCCCchHHHHHHHHHhCCCeeeCc
Q 030464           77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMS  110 (177)
Q Consensus        77 ~~~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~  110 (177)
                      .+.-|++.||||+|||.+|+++|...+++++++.
T Consensus       181 ~prGvLL~GPPGTGKTllAkAiA~e~~~~f~~v~  214 (405)
T 4b4t_J          181 QPKGVILYGPPGTGKTLLARAVAHHTDCKFIRVS  214 (405)
T ss_dssp             CCCCEEEESCSSSSHHHHHHHHHHHHTCEEEEEE
T ss_pred             CCCceEEeCCCCCCHHHHHHHHHHhhCCCceEEE
Confidence            4567999999999999999999999999877664

>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A

Probab=97.64  E-value=3e-05  Score=66.04  Aligned_cols=34  Identities=29%  Similarity=0.407  Sum_probs=29.9

Q ss_pred             CCeEEEEEcCCCCCchHHHHHHHHHhCCCeeeCc
Q 030464           77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMS  110 (177)
Q Consensus        77 ~~~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~  110 (177)
                      .+..|+|.||||+|||++|+.||+.++.+++.++
T Consensus        50 ~~~~vll~GppGtGKT~la~~ia~~~~~~~~~~~   83 (363)
T 3hws_A           50 GKSNILLIGPTGSGKTLLAETLARLLDVPFTMAD   83 (363)
T ss_dssp             CCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEE
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEec
Confidence            4557999999999999999999999998877664

>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}

Probab=97.64  E-value=3.2e-05  Score=64.48  Aligned_cols=38  Identities=18%  Similarity=0.274  Sum_probs=31.4

Q ss_pred             CCeEEEEEcCCCCCchHHHHHHHHHhCCCeeeCc--hhhh
Q 030464           77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMS--SIVR  114 (177)
Q Consensus        77 ~~~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~--dLlr  114 (177)
                      .+..|+|.||||+|||++|+.|++.++.+++.+.  +++.
T Consensus        48 ~~~~vLL~Gp~GtGKT~la~ala~~~~~~~i~v~~~~l~~   87 (301)
T 3cf0_A           48 PSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLT   87 (301)
T ss_dssp             CCSEEEEECSSSSSHHHHHHHHHHHTTCEEEEECHHHHHH
T ss_pred             CCceEEEECCCCcCHHHHHHHHHHHhCCCEEEEEhHHHHh
Confidence            4567999999999999999999999988877654  4544

>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*

Probab=97.61  E-value=3.5e-05  Score=62.81  Aligned_cols=33  Identities=27%  Similarity=0.294  Sum_probs=28.4

Q ss_pred             CCeEEEEEcCCCCCchHHHHHHHHHhCCCeeeC
Q 030464           77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISM  109 (177)
Q Consensus        77 ~~~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~  109 (177)
                      .+..++|.||||+|||++|+.+++.++.+++.+
T Consensus        49 ~~~~vll~G~~GtGKT~la~~la~~l~~~~~~i   81 (310)
T 1ofh_A           49 TPKNILMIGPTGVGKTEIARRLAKLANAPFIKV   81 (310)
T ss_dssp             CCCCEEEECCTTSSHHHHHHHHHHHHTCCEEEE
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHhCCCEEEE
Confidence            456799999999999999999999998776544

>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*

Probab=97.60  E-value=8.8e-06  Score=63.35  Aligned_cols=28  Identities=25%  Similarity=0.140  Sum_probs=24.2

Q ss_pred             EEEEEcCCCCCchHHHHHHHHHhCCCee
Q 030464           80 HWAFIGSPRAKKHVYAEMLSKLLEVPRI  107 (177)
Q Consensus        80 ~IlIiGpPGSGKSTlA~~LAk~lgl~~I  107 (177)
                      .|+|.|++||||||+++.|++.++...+
T Consensus         2 ~I~i~G~~GsGKsTl~~~L~~~l~~~g~   29 (214)
T 1gtv_A            2 LIAIEGVDGAGKRTLVEKLSGAFRAAGR   29 (214)
T ss_dssp             EEEEEEEEEEEHHHHHHHHHHHHHEEEE
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHHHhcCC
Confidence            6899999999999999999999864433

>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...

Probab=97.60  E-value=1.4e-05  Score=65.12  Aligned_cols=33  Identities=18%  Similarity=0.233  Sum_probs=28.1

Q ss_pred             CCCeEEEEEcCCCCCchHHHHHHHHHh-CCCeee
Q 030464           76 RRGVHWAFIGSPRAKKHVYAEMLSKLL-EVPRIS  108 (177)
Q Consensus        76 ~~~~~IlIiGpPGSGKSTlA~~LAk~l-gl~~Is  108 (177)
                      .+++.|+|.|++||||||+++.|++.+ ++.++.
T Consensus        22 ~~~~~I~ieG~~GsGKST~~~~L~~~l~~~~~i~   55 (263)
T 1p5z_B           22 TRIKKISIEGNIAAGKSTFVNILKQLCEDWEVVP   55 (263)
T ss_dssp             -CCEEEEEECSTTSSHHHHHTTTGGGCTTEEEEC
T ss_pred             cCceEEEEECCCCCCHHHHHHHHHHhcCCCEEEe
Confidence            467899999999999999999999998 665553

>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*

Probab=97.59  E-value=4.6e-05  Score=68.22  Aligned_cols=35  Identities=26%  Similarity=0.290  Sum_probs=31.2

Q ss_pred             CCeEEEEEcCCCCCchHHHHHHHHHhCCCeeeCch
Q 030464           77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSS  111 (177)
Q Consensus        77 ~~~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~d  111 (177)
                      .+..|+|+||||+|||++|+.||+.++.+++.++.
T Consensus        49 ~~~~iLl~GppGtGKT~lar~lA~~l~~~~~~v~~   83 (444)
T 1g41_A           49 TPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEA   83 (444)
T ss_dssp             CCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEG
T ss_pred             CCceEEEEcCCCCCHHHHHHHHHHHcCCCceeecc
Confidence            45679999999999999999999999999887763

>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}

Probab=97.58  E-value=4.1e-05  Score=63.49  Aligned_cols=30  Identities=20%  Similarity=0.242  Sum_probs=26.3

Q ss_pred             EEEEcCCCCCchHHHHHHHHHhCCCeeeCc
Q 030464           81 WAFIGSPRAKKHVYAEMLSKLLEVPRISMS  110 (177)
Q Consensus        81 IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~  110 (177)
                      ++|+||||+||||+++.|+..++...+.+.
T Consensus        47 vlL~Gp~GtGKTtLakala~~~~~~~i~i~   76 (274)
T 2x8a_A           47 VLLAGPPGCGKTLLAKAVANESGLNFISVK   76 (274)
T ss_dssp             EEEESSTTSCHHHHHHHHHHHTTCEEEEEE
T ss_pred             EEEECCCCCcHHHHHHHHHHHcCCCEEEEE
Confidence            999999999999999999999887655543

>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1

Probab=97.57  E-value=4.2e-05  Score=58.96  Aligned_cols=28  Identities=7%  Similarity=0.038  Sum_probs=24.3

Q ss_pred             CCCeEEEEEcCCCCCchHHHHHHHHHhC
Q 030464           76 RRGVHWAFIGSPRAKKHVYAEMLSKLLE  103 (177)
Q Consensus        76 ~~~~~IlIiGpPGSGKSTlA~~LAk~lg  103 (177)
                      .++..|+|+||+||||||+++.|++.+.
T Consensus         3 ~~g~~i~i~GpsGsGKSTL~~~L~~~~~   30 (180)
T 1kgd_A            3 HMRKTLVLLGAHGVGRRHIKNTLITKHP   30 (180)
T ss_dssp             CCCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence            4566899999999999999999998753

>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20

Probab=97.57  E-value=5.8e-05  Score=56.19  Aligned_cols=26  Identities=23%  Similarity=0.270  Sum_probs=23.0

Q ss_pred             CCeEEEEEcCCCCCchHHHHHHHHHh
Q 030464           77 RGVHWAFIGSPRAKKHVYAEMLSKLL  102 (177)
Q Consensus        77 ~~~~IlIiGpPGSGKSTlA~~LAk~l  102 (177)
                      .+..++|.|+||+|||++++.+++.+
T Consensus        42 ~~~~~ll~G~~G~GKT~l~~~~~~~~   67 (195)
T 1jbk_A           42 TKNNPVLIGEPGVGKTAIVEGLAQRI   67 (195)
T ss_dssp             SSCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CCCceEEECCCCCCHHHHHHHHHHHH
Confidence            34568999999999999999999986

>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}

Probab=97.56  E-value=4.2e-05  Score=60.39  Aligned_cols=27  Identities=26%  Similarity=0.219  Sum_probs=24.3

Q ss_pred             CCeEEEEEcCCCCCchHHHHHHHHHhC
Q 030464           77 RGVHWAFIGSPRAKKHVYAEMLSKLLE  103 (177)
Q Consensus        77 ~~~~IlIiGpPGSGKSTlA~~LAk~lg  103 (177)
                      ++..|+|+||+||||||+++.|++.+.
T Consensus         7 ~g~~i~l~GpsGsGKsTl~~~L~~~~~   33 (208)
T 3tau_A            7 RGLLIVLSGPSGVGKGTVREAVFKDPE   33 (208)
T ss_dssp             CCCEEEEECCTTSCHHHHHHHHHHSTT
T ss_pred             CCcEEEEECcCCCCHHHHHHHHHhhCC
Confidence            566789999999999999999999874

>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=97.54  E-value=3.9e-05  Score=69.16  Aligned_cols=34  Identities=15%  Similarity=0.155  Sum_probs=29.9

Q ss_pred             CCeEEEEEcCCCCCchHHHHHHHHHhCCCeeeCc
Q 030464           77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMS  110 (177)
Q Consensus        77 ~~~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~  110 (177)
                      .+.-|++.||||+|||.+|+.||...+++++.+.
T Consensus       242 pprGILLyGPPGTGKTlLAkAiA~e~~~~fi~vs  275 (467)
T 4b4t_H          242 PPKGILLYGPPGTGKTLCARAVANRTDATFIRVI  275 (467)
T ss_dssp             CCSEEEECSCTTSSHHHHHHHHHHHHTCEEEEEE
T ss_pred             CCCceEeeCCCCCcHHHHHHHHHhccCCCeEEEE
Confidence            5567999999999999999999999998876654

>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*

Probab=97.54  E-value=8e-05  Score=68.34  Aligned_cols=41  Identities=24%  Similarity=0.281  Sum_probs=32.1

Q ss_pred             CCeEEEEEcCCCCCchHHHHHHHHHhC----CC--eeeCchhhhhccC
Q 030464           77 RGVHWAFIGSPRAKKHVYAEMLSKLLE----VP--RISMSSIVRQDLS  118 (177)
Q Consensus        77 ~~~~IlIiGpPGSGKSTlA~~LAk~lg----l~--~Is~~dLlr~el~  118 (177)
                      +++.|+|+|+|||||||+|+.|++.++    .+  +++ +|.++..+.
T Consensus       395 ~~~~I~l~GlsGSGKSTiA~~La~~L~~~G~~~~~~lD-~D~ir~~l~  441 (573)
T 1m8p_A          395 QGFTIFLTGYMNSGKDAIARALQVTLNQQGGRSVSLLL-GDTVRHELS  441 (573)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHHHHHHHCSSCEEEEE-HHHHHHHTC
T ss_pred             cceEEEeecCCCCCHHHHHHHHHHHhcccCCceEEEEC-cHHHHHHhc
Confidence            457899999999999999999999976    43  444 456666554

>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1

Probab=97.54  E-value=4.9e-05  Score=61.00  Aligned_cols=28  Identities=18%  Similarity=0.223  Sum_probs=25.3

Q ss_pred             CCeEEEEEcCCCCCchHHHHHHHHHh-CC
Q 030464           77 RGVHWAFIGSPRAKKHVYAEMLSKLL-EV  104 (177)
Q Consensus        77 ~~~~IlIiGpPGSGKSTlA~~LAk~l-gl  104 (177)
                      +++.|+|.|++||||||+++.|++.+ ++
T Consensus         1 ~~~~i~~~G~~g~GKtt~~~~l~~~l~~~   29 (241)
T 2ocp_A            1 GPRRLSIEGNIAVGKSTFVKLLTKTYPEW   29 (241)
T ss_dssp             CCEEEEEEECTTSSHHHHHHHHHHHCTTS
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHcCCC
Confidence            46789999999999999999999998 44

>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*

Probab=97.54  E-value=4.6e-05  Score=67.66  Aligned_cols=33  Identities=15%  Similarity=0.080  Sum_probs=30.8

Q ss_pred             eEEEEEcCCCCCchHHHHHHHHHhCCCeeeCch
Q 030464           79 VHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSS  111 (177)
Q Consensus        79 ~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~d  111 (177)
                      +.|+|+||+||||||+|..|++.++..+||++.
T Consensus         3 ~~i~i~GptgsGKttla~~La~~~~~~iis~Ds   35 (409)
T 3eph_A            3 KVIVIAGTTGVGKSQLSIQLAQKFNGEVINSDS   35 (409)
T ss_dssp             EEEEEEECSSSSHHHHHHHHHHHHTEEEEECCT
T ss_pred             cEEEEECcchhhHHHHHHHHHHHCCCeEeecCc
Confidence            468899999999999999999999999999887

>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}

Probab=97.53  E-value=4.8e-05  Score=56.84  Aligned_cols=26  Identities=19%  Similarity=0.202  Sum_probs=23.1

Q ss_pred             CCeEEEEEcCCCCCchHHHHHHHHHh
Q 030464           77 RGVHWAFIGSPRAKKHVYAEMLSKLL  102 (177)
Q Consensus        77 ~~~~IlIiGpPGSGKSTlA~~LAk~l  102 (177)
                      .+..++|.|+||+|||++++.+++.+
T Consensus        42 ~~~~vll~G~~G~GKT~la~~~~~~~   67 (187)
T 2p65_A           42 TKNNPILLGDPGVGKTAIVEGLAIKI   67 (187)
T ss_dssp             SSCEEEEESCGGGCHHHHHHHHHHHH
T ss_pred             CCCceEEECCCCCCHHHHHHHHHHHH
Confidence            34568999999999999999999987

>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*

Probab=97.53  E-value=5.4e-05  Score=68.82  Aligned_cols=28  Identities=11%  Similarity=0.024  Sum_probs=26.0

Q ss_pred             CCeEEEEEcCCCCCchHHHHHHHHHhCC
Q 030464           77 RGVHWAFIGSPRAKKHVYAEMLSKLLEV  104 (177)
Q Consensus        77 ~~~~IlIiGpPGSGKSTlA~~LAk~lgl  104 (177)
                      ++.+|+|+|.+||||||+++.||++++.
T Consensus       394 ~~~~I~l~GlsGsGKSTIa~~La~~L~~  421 (511)
T 1g8f_A          394 QGFSIVLGNSLTVSREQLSIALLSTFLQ  421 (511)
T ss_dssp             CCEEEEECTTCCSCHHHHHHHHHHHHTT
T ss_pred             cceEEEecccCCCCHHHHHHHHHHHHHH
Confidence            5578999999999999999999999986

>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=97.52  E-value=5.3e-05  Score=67.80  Aligned_cols=39  Identities=10%  Similarity=0.215  Sum_probs=31.8

Q ss_pred             CCeEEEEEcCCCCCchHHHHHHHHHhCCCeeeCc--hhhhh
Q 030464           77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMS--SIVRQ  115 (177)
Q Consensus        77 ~~~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~--dLlr~  115 (177)
                      .+.-|++.||||+|||.+|+++|...+++++.+.  +++..
T Consensus       215 ~prGvLLyGPPGTGKTlLAkAiA~e~~~~fi~v~~s~l~sk  255 (437)
T 4b4t_I          215 PPKGVILYGAPGTGKTLLAKAVANQTSATFLRIVGSELIQK  255 (437)
T ss_dssp             CCSEEEEESSTTTTHHHHHHHHHHHHTCEEEEEESGGGCCS
T ss_pred             CCCCCceECCCCchHHHHHHHHHHHhCCCEEEEEHHHhhhc
Confidence            4567999999999999999999999998866654  44443

>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20

Probab=97.52  E-value=5.3e-05  Score=64.68  Aligned_cols=34  Identities=24%  Similarity=0.334  Sum_probs=29.2

Q ss_pred             CCeEEEEEcCCCCCchHHHHHHHHHhCCCeeeCc
Q 030464           77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMS  110 (177)
Q Consensus        77 ~~~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~  110 (177)
                      .+..|+|.||||+|||++|+.|++.++.+++.++
T Consensus        71 ~~~~ill~Gp~GtGKT~la~~la~~l~~~~~~~~  104 (376)
T 1um8_A           71 SKSNILLIGPTGSGKTLMAQTLAKHLDIPIAISD  104 (376)
T ss_dssp             CCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEE
T ss_pred             CCCCEEEECCCCCCHHHHHHHHHHHhCCCEEEec
Confidence            3457999999999999999999999988776653

>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*

Probab=97.51  E-value=2.6e-05  Score=63.01  Aligned_cols=32  Identities=25%  Similarity=0.343  Sum_probs=27.2

Q ss_pred             eEEEEEcCCCCCchHHHHHHHHHhCCCeeeCc
Q 030464           79 VHWAFIGSPRAKKHVYAEMLSKLLEVPRISMS  110 (177)
Q Consensus        79 ~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~  110 (177)
                      ..++|.||||+|||++|+.|++.++.+++.+.
T Consensus        45 ~~vll~G~~GtGKT~la~~la~~~~~~~~~v~   76 (268)
T 2r62_A           45 KGVLLVGPPGTGKTLLAKAVAGEAHVPFFSMG   76 (268)
T ss_dssp             SCCCCBCSSCSSHHHHHHHHHHHHTCCCCCCC
T ss_pred             ceEEEECCCCCcHHHHHHHHHHHhCCCEEEec
Confidence            34889999999999999999999987766543

>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*

Probab=97.51  E-value=6.8e-05  Score=60.28  Aligned_cols=30  Identities=27%  Similarity=0.334  Sum_probs=26.4

Q ss_pred             EEEEcCCCCCchHHHHHHHHHhCCCeeeCc
Q 030464           81 WAFIGSPRAKKHVYAEMLSKLLEVPRISMS  110 (177)
Q Consensus        81 IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~  110 (177)
                      ++|+||||+||||+++.|+...+...+.+.
T Consensus        52 ~ll~G~~G~GKTtl~~~i~~~~~~~~i~~~   81 (254)
T 1ixz_A           52 VLLVGPPGVGKTHLARAVAGEARVPFITAS   81 (254)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHTTCCEEEEE
T ss_pred             EEEECCCCCCHHHHHHHHHHHhCCCEEEee
Confidence            999999999999999999999877666554

>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A

Probab=97.51  E-value=5.2e-05  Score=59.08  Aligned_cols=38  Identities=5%  Similarity=-0.087  Sum_probs=29.8

Q ss_pred             CCeEEEEEcCCCCCchHHHHHHHHHhC-----CCeeeCchhhh
Q 030464           77 RGVHWAFIGSPRAKKHVYAEMLSKLLE-----VPRISMSSIVR  114 (177)
Q Consensus        77 ~~~~IlIiGpPGSGKSTlA~~LAk~lg-----l~~Is~~dLlr  114 (177)
                      .+..++|.||||+|||++++.+++.++     +.+++..++..
T Consensus        51 ~~~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~   93 (242)
T 3bos_A           51 GVQAIYLWGPVKSGRTHLIHAACARANELERRSFYIPLGIHAS   93 (242)
T ss_dssp             SCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGGGG
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHHH
Confidence            456799999999999999999998764     35666666543

>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0

Probab=97.49  E-value=0.00031  Score=56.22  Aligned_cols=28  Identities=11%  Similarity=0.068  Sum_probs=24.6

Q ss_pred             CCCeEEEEEcCCCCCchHHHHHHHHHhC
Q 030464           76 RRGVHWAFIGSPRAKKHVYAEMLSKLLE  103 (177)
Q Consensus        76 ~~~~~IlIiGpPGSGKSTlA~~LAk~lg  103 (177)
                      .++..|+|+||+||||||+++.|.+.+.
T Consensus        17 ~~g~~ivl~GPSGaGKsTL~~~L~~~~~   44 (197)
T 3ney_A           17 QGRKTLVLIGASGVGRSHIKNALLSQNP   44 (197)
T ss_dssp             CSCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred             CCCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence            3667789999999999999999998864

>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}

Probab=97.45  E-value=7.4e-05  Score=63.16  Aligned_cols=39  Identities=21%  Similarity=0.176  Sum_probs=30.1

Q ss_pred             CCeEEEEEcCCCCCchHHHHHHHHHh-CCCe--eeCchhhhh
Q 030464           77 RGVHWAFIGSPRAKKHVYAEMLSKLL-EVPR--ISMSSIVRQ  115 (177)
Q Consensus        77 ~~~~IlIiGpPGSGKSTlA~~LAk~l-gl~~--Is~~dLlr~  115 (177)
                      .+..|+|.||||+|||++|+.+|+.+ +.++  ++..+++..
T Consensus        44 ~~~~iLL~GppGtGKT~la~ala~~~~~~~~~~i~~~~l~~~   85 (322)
T 1xwi_A           44 PWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVSK   85 (322)
T ss_dssp             CCSEEEEESSSSSCHHHHHHHHHHHTTSCEEEEEECCSSCCS
T ss_pred             CCceEEEECCCCccHHHHHHHHHHHcCCCcEEEEEhHHHHhh
Confidence            34678999999999999999999988 6554  455455443

>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*

Probab=97.45  E-value=6.6e-05  Score=64.28  Aligned_cols=37  Identities=19%  Similarity=0.200  Sum_probs=30.2

Q ss_pred             CeEEEEEcCCCCCchHHHHHHHHHhCCCeeeCc--hhhh
Q 030464           78 GVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMS--SIVR  114 (177)
Q Consensus        78 ~~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~--dLlr  114 (177)
                      +..|+|.||||+|||++|+.+++.++.+++.+.  +++.
T Consensus        84 ~~~iLL~GppGtGKT~la~ala~~~~~~~~~v~~~~l~~  122 (355)
T 2qp9_X           84 TSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVS  122 (355)
T ss_dssp             CCCEEEECSTTSCHHHHHHHHHHHHTCEEEEEEHHHHHS
T ss_pred             CceEEEECCCCCcHHHHHHHHHHHhCCCEEEeeHHHHhh
Confidence            456899999999999999999999998766553  4443

>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*

Probab=97.45  E-value=8.3e-05  Score=62.47  Aligned_cols=38  Identities=26%  Similarity=0.257  Sum_probs=31.6

Q ss_pred             CCCeEEEEEcCCCCCchHHHHHHHHHhC-------CCeeeCchhh
Q 030464           76 RRGVHWAFIGSPRAKKHVYAEMLSKLLE-------VPRISMSSIV  113 (177)
Q Consensus        76 ~~~~~IlIiGpPGSGKSTlA~~LAk~lg-------l~~Is~~dLl  113 (177)
                      .++..|.|+|++||||||+++.|+..++       +.++++++..
T Consensus        78 ~~g~iigI~G~~GsGKSTl~~~L~~~l~~~~~~G~i~vi~~d~~~  122 (308)
T 1sq5_A           78 RIPYIISIAGSVAVGKSTTARVLQALLSRWPEHRRVELITTDGFL  122 (308)
T ss_dssp             CCCEEEEEEECTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGGB
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHHhhCCCCCeEEEEecCCcc
Confidence            5677899999999999999999999876       5667777643

>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*

Probab=97.44  E-value=0.00018  Score=68.65  Aligned_cols=34  Identities=12%  Similarity=0.059  Sum_probs=30.3

Q ss_pred             CCeEEEEEcCCCCCchHHHHHHHHHhCCCeeeCc
Q 030464           77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMS  110 (177)
Q Consensus        77 ~~~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~  110 (177)
                      .+.-|+|.||||+|||++|+.+|+.+|.+++.++
T Consensus       237 ~p~GILL~GPPGTGKT~LAraiA~elg~~~~~v~  270 (806)
T 3cf2_A          237 PPRGILLYGPPGTGKTLIARAVANETGAFFFLIN  270 (806)
T ss_dssp             CCCEEEEECCTTSCHHHHHHHHHTTTTCEEEEEE
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHhCCeEEEEE
Confidence            4567999999999999999999999999877664

>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}

Probab=97.43  E-value=0.00028  Score=58.80  Aligned_cols=26  Identities=15%  Similarity=0.163  Sum_probs=23.3

Q ss_pred             CCeEEEEEcCCCCCchHHHHHHHHHh
Q 030464           77 RGVHWAFIGSPRAKKHVYAEMLSKLL  102 (177)
Q Consensus        77 ~~~~IlIiGpPGSGKSTlA~~LAk~l  102 (177)
                      .+..++|.||||+|||++++.+++.+
T Consensus        43 ~~~~vll~G~~G~GKT~l~~~~~~~~   68 (387)
T 2v1u_A           43 KPSNALLYGLTGTGKTAVARLVLRRL   68 (387)
T ss_dssp             CCCCEEECBCTTSSHHHHHHHHHHHH
T ss_pred             CCCcEEEECCCCCCHHHHHHHHHHHH
Confidence            45579999999999999999999887

>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*

Probab=97.43  E-value=4.1e-05  Score=66.92  Aligned_cols=30  Identities=27%  Similarity=0.340  Sum_probs=27.2

Q ss_pred             CCeEEEEEcCCCCCchHHHHHHHHHhCCCe
Q 030464           77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPR  106 (177)
Q Consensus        77 ~~~~IlIiGpPGSGKSTlA~~LAk~lgl~~  106 (177)
                      +..+|+|+|+||+||||+++.|++.+++++
T Consensus        23 ~~~~i~l~G~~G~GKTTl~~~la~~l~~~f   52 (359)
T 2ga8_A           23 YRVCVILVGSPGSGKSTIAEELCQIINEKY   52 (359)
T ss_dssp             SCEEEEEECCTTSSHHHHHHHHHHHHHHHH
T ss_pred             CeeEEEEECCCCCcHHHHHHHHHHHhCCCe
Confidence            345799999999999999999999999887

>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}

Probab=97.41  E-value=8.9e-05  Score=63.36  Aligned_cols=33  Identities=12%  Similarity=0.148  Sum_probs=28.6

Q ss_pred             CCeEEEEEcCCCCCchHHHHHHHHHhCCCeeeC
Q 030464           77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISM  109 (177)
Q Consensus        77 ~~~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~  109 (177)
                      .+..|+|.||||+|||++|+.+++.++.+++.+
T Consensus       116 ~~~~vLl~GppGtGKT~la~aia~~~~~~~~~i  148 (357)
T 3d8b_A          116 PPKGILLFGPPGTGKTLIGKCIASQSGATFFSI  148 (357)
T ss_dssp             CCSEEEEESSTTSSHHHHHHHHHHHTTCEEEEE
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHcCCeEEEE
Confidence            456799999999999999999999998876544

>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6

Probab=97.41  E-value=0.00012  Score=57.22  Aligned_cols=28  Identities=25%  Similarity=0.230  Sum_probs=24.7

Q ss_pred             cCCCeEEEEEcCCCCCchHHHHHHHHHh
Q 030464           75 RRRGVHWAFIGSPRAKKHVYAEMLSKLL  102 (177)
Q Consensus        75 ~~~~~~IlIiGpPGSGKSTlA~~LAk~l  102 (177)
                      +.++..|.|+|++||||||+++.|+..+
T Consensus        19 ~~~~~~i~i~G~~GsGKstl~~~l~~~~   46 (201)
T 1rz3_A           19 TAGRLVLGIDGLSRSGKTTLANQLSQTL   46 (201)
T ss_dssp             CSSSEEEEEEECTTSSHHHHHHHHHHHH
T ss_pred             cCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            3567889999999999999999999865

>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*

Probab=97.38  E-value=0.0001  Score=65.05  Aligned_cols=34  Identities=26%  Similarity=0.313  Sum_probs=28.6

Q ss_pred             CCeEEEEEcCCCCCchHHHHHHHHHhC--CCeeeCc
Q 030464           77 RGVHWAFIGSPRAKKHVYAEMLSKLLE--VPRISMS  110 (177)
Q Consensus        77 ~~~~IlIiGpPGSGKSTlA~~LAk~lg--l~~Is~~  110 (177)
                      .+..++|.||||+|||++|+.+|+.++  ++++.+.
T Consensus        62 ~~~~iLl~GppGtGKT~la~ala~~l~~~~~~~~~~   97 (456)
T 2c9o_A           62 AGRAVLLAGPPGTGKTALALAIAQELGSKVPFCPMV   97 (456)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHHHHHCTTSCEEEEE
T ss_pred             CCCeEEEECCCcCCHHHHHHHHHHHhCCCceEEEEe
Confidence            345799999999999999999999998  6665544

>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}

Probab=97.38  E-value=0.00011  Score=61.35  Aligned_cols=33  Identities=18%  Similarity=0.137  Sum_probs=28.9

Q ss_pred             CeEEEEEcCCCCCchHHHHHHHHHhCCCeeeCc
Q 030464           78 GVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMS  110 (177)
Q Consensus        78 ~~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~  110 (177)
                      ...|+|.|+||+|||++|+.+++.++.+++.+.
T Consensus        55 ~~~vll~G~~GtGKT~la~~ia~~~~~~~~~~~   87 (338)
T 3pfi_A           55 LDHILFSGPAGLGKTTLANIISYEMSANIKTTA   87 (338)
T ss_dssp             CCCEEEECSTTSSHHHHHHHHHHHTTCCEEEEE
T ss_pred             CCeEEEECcCCCCHHHHHHHHHHHhCCCeEEec
Confidence            346899999999999999999999998876654

>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}

Probab=97.37  E-value=9.9e-05  Score=57.11  Aligned_cols=37  Identities=16%  Similarity=0.161  Sum_probs=28.7

Q ss_pred             eEEEEEcCCCCCchHHHHHHHHHh---CCC--eeeCchhhhh
Q 030464           79 VHWAFIGSPRAKKHVYAEMLSKLL---EVP--RISMSSIVRQ  115 (177)
Q Consensus        79 ~~IlIiGpPGSGKSTlA~~LAk~l---gl~--~Is~~dLlr~  115 (177)
                      ..++|.|+||+|||++|+.+++..   +..  +++..+++..
T Consensus        55 ~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~~~~~~   96 (202)
T 2w58_A           55 KGLYLHGSFGVGKTYLLAAIANELAKRNVSSLIVYVPELFRE   96 (202)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEEHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEhHHHHHH
Confidence            679999999999999999999876   333  4566555543

>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20

Probab=97.36  E-value=0.00013  Score=59.70  Aligned_cols=30  Identities=27%  Similarity=0.334  Sum_probs=26.5

Q ss_pred             EEEEcCCCCCchHHHHHHHHHhCCCeeeCc
Q 030464           81 WAFIGSPRAKKHVYAEMLSKLLEVPRISMS  110 (177)
Q Consensus        81 IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~  110 (177)
                      ++|+||||+||||+++.|+...+...+.+.
T Consensus        76 vll~Gp~GtGKTtl~~~i~~~~~~~~i~~~  105 (278)
T 1iy2_A           76 VLLVGPPGVGKTHLARAVAGEARVPFITAS  105 (278)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHTTCCEEEEE
T ss_pred             EEEECCCcChHHHHHHHHHHHcCCCEEEec
Confidence            899999999999999999999877666554

>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}

Probab=97.35  E-value=0.00014  Score=62.24  Aligned_cols=39  Identities=21%  Similarity=0.214  Sum_probs=31.7

Q ss_pred             cCCCeEEEEEcCCCCCchHHHHHHHHHhC-------CCeeeCchhh
Q 030464           75 RRRGVHWAFIGSPRAKKHVYAEMLSKLLE-------VPRISMSSIV  113 (177)
Q Consensus        75 ~~~~~~IlIiGpPGSGKSTlA~~LAk~lg-------l~~Is~~dLl  113 (177)
                      ..++..|.|+||+||||||+++.|+..++       +..+++++..
T Consensus        89 ~~~p~iigI~GpsGSGKSTl~~~L~~ll~~~~~~~~v~~i~~D~f~  134 (321)
T 3tqc_A           89 PKVPYIIGIAGSVAVGKSTTSRVLKALLSRWPDHPNVEVITTDGFL  134 (321)
T ss_dssp             CCCCEEEEEECCTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGGB
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHHhcccCCCCeEEEEeecccc
Confidence            35677899999999999999999998875       4567777654

>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6

Probab=97.35  E-value=0.00012  Score=61.47  Aligned_cols=39  Identities=13%  Similarity=0.054  Sum_probs=31.7

Q ss_pred             CCCeEEEEEcCCCCCchHHHHHHHHHhC-------CCee-eCchhhh
Q 030464           76 RRGVHWAFIGSPRAKKHVYAEMLSKLLE-------VPRI-SMSSIVR  114 (177)
Q Consensus        76 ~~~~~IlIiGpPGSGKSTlA~~LAk~lg-------l~~I-s~~dLlr  114 (177)
                      .++..|.|.|++||||||+++.|++.++       ...+ +.++.+.
T Consensus        29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~~~g~~~~~~~iv~~D~f~~   75 (290)
T 1odf_A           29 KCPLFIFFSGPQGSGKSFTSIQIYNHLMEKYGGEKSIGYASIDDFYL   75 (290)
T ss_dssp             CSCEEEEEECCTTSSHHHHHHHHHHHHHHHHGGGSCEEEEEGGGGBC
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHhhhcCCCCceEEEeccccccC
Confidence            4678899999999999999999998774       3445 7777654

>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*

Probab=97.34  E-value=0.00011  Score=59.60  Aligned_cols=35  Identities=17%  Similarity=-0.004  Sum_probs=30.5

Q ss_pred             CCCeEEEEEcCCCCCchHHHHHHHHHhCCCeeeCch
Q 030464           76 RRGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSS  111 (177)
Q Consensus        76 ~~~~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~d  111 (177)
                      ..+..|+|+||+|+||||+|..|+++.+ ..|+.+.
T Consensus        32 ~~g~~ilI~GpsGsGKStLA~~La~~g~-~iIsdDs   66 (205)
T 2qmh_A           32 IYGLGVLITGDSGVGKSETALELVQRGH-RLIADDR   66 (205)
T ss_dssp             ETTEEEEEECCCTTTTHHHHHHHHTTTC-EEEESSE
T ss_pred             ECCEEEEEECCCCCCHHHHHHHHHHhCC-eEEecch
Confidence            4667899999999999999999999877 8888765

>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}

Probab=97.34  E-value=0.00015  Score=62.10  Aligned_cols=27  Identities=7%  Similarity=0.043  Sum_probs=24.9

Q ss_pred             CCCeEEEEEcCCCCCchHHHHHHHHHh
Q 030464           76 RRGVHWAFIGSPRAKKHVYAEMLSKLL  102 (177)
Q Consensus        76 ~~~~~IlIiGpPGSGKSTlA~~LAk~l  102 (177)
                      .++..++|.||||+|||++++.+++.+
T Consensus        43 ~~~~~lli~GpPGTGKT~~v~~v~~~L   69 (318)
T 3te6_A           43 SQNKLFYITNADDSTKFQLVNDVMDEL   69 (318)
T ss_dssp             TCCCEEEEECCCSHHHHHHHHHHHHHH
T ss_pred             CCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence            477889999999999999999999987

>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}

Probab=97.34  E-value=0.00012  Score=62.93  Aligned_cols=32  Identities=13%  Similarity=0.186  Sum_probs=28.4

Q ss_pred             CeEEEEEcCCCCCchHHHHHHHHHhCCCeeeC
Q 030464           78 GVHWAFIGSPRAKKHVYAEMLSKLLEVPRISM  109 (177)
Q Consensus        78 ~~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~  109 (177)
                      +..|+|.||||+|||++|+.+|+.++.+++.+
T Consensus       148 ~~~vLL~GppGtGKT~la~aia~~~~~~~~~v  179 (389)
T 3vfd_A          148 ARGLLLFGPPGNGKTMLAKAVAAESNATFFNI  179 (389)
T ss_dssp             CSEEEEESSTTSCHHHHHHHHHHHTTCEEEEE
T ss_pred             CceEEEECCCCCCHHHHHHHHHHhhcCcEEEe
Confidence            46899999999999999999999998876654

>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11

Probab=97.33  E-value=0.00011  Score=57.32  Aligned_cols=27  Identities=15%  Similarity=0.207  Sum_probs=24.1

Q ss_pred             eEEEEEcCCCCCchHHHHHHHHHhCCC
Q 030464           79 VHWAFIGSPRAKKHVYAEMLSKLLEVP  105 (177)
Q Consensus        79 ~~IlIiGpPGSGKSTlA~~LAk~lgl~  105 (177)
                      +++.|+||+||||||+.+.|+..+++.
T Consensus         1 ~~i~l~G~nGsGKTTLl~~l~g~l~i~   27 (178)
T 1ye8_A            1 MKIIITGEPGVGKTTLVKKIVERLGKR   27 (178)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHHGGG
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHhCCc
Confidence            478999999999999999999988744

>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}

Probab=97.31  E-value=0.00013  Score=55.26  Aligned_cols=37  Identities=16%  Similarity=0.074  Sum_probs=29.0

Q ss_pred             CCeEEEEEcCCCCCchHHHHHHHHHh---C--CCeeeCchhh
Q 030464           77 RGVHWAFIGSPRAKKHVYAEMLSKLL---E--VPRISMSSIV  113 (177)
Q Consensus        77 ~~~~IlIiGpPGSGKSTlA~~LAk~l---g--l~~Is~~dLl  113 (177)
                      ++..++|+|++|+||||+++.++..+   |  +.+++..++.
T Consensus        35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~~g~~~~~~~~~~~~   76 (149)
T 2kjq_A           35 HGQFIYVWGEEGAGKSHLLQAWVAQALEAGKNAAYIDAASMP   76 (149)
T ss_dssp             CCSEEEEESSSTTTTCHHHHHHHHHHHTTTCCEEEEETTTSC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEcHHHhh
Confidence            45578899999999999999999877   6  4455555543

>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*

Probab=97.29  E-value=0.00016  Score=61.15  Aligned_cols=29  Identities=21%  Similarity=0.248  Sum_probs=25.6

Q ss_pred             eEEEEEcCCCCCchHHHHHHHHHhCCCee
Q 030464           79 VHWAFIGSPRAKKHVYAEMLSKLLEVPRI  107 (177)
Q Consensus        79 ~~IlIiGpPGSGKSTlA~~LAk~lgl~~I  107 (177)
                      ..++|+||||+||||+++.|+..++..+.
T Consensus        52 ~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~   80 (334)
T 1in4_A           52 DHVLLAGPPGLGKTTLAHIIASELQTNIH   80 (334)
T ss_dssp             CCEEEESSTTSSHHHHHHHHHHHHTCCEE
T ss_pred             CeEEEECCCCCcHHHHHHHHHHHhCCCEE
Confidence            56899999999999999999999987643

>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*

Probab=97.26  E-value=0.00017  Score=64.95  Aligned_cols=32  Identities=22%  Similarity=0.323  Sum_probs=28.0

Q ss_pred             eEEEEEcCCCCCchHHHHHHHHHhCCCeeeCc
Q 030464           79 VHWAFIGSPRAKKHVYAEMLSKLLEVPRISMS  110 (177)
Q Consensus        79 ~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~  110 (177)
                      ..|+|+||||+|||++|+.++...+.+++.+.
T Consensus        50 ~gvLL~GppGtGKT~Laraia~~~~~~f~~is   81 (476)
T 2ce7_A           50 KGILLVGPPGTGKTLLARAVAGEANVPFFHIS   81 (476)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHHHHTCCEEEEE
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHcCCCeeeCC
Confidence            34899999999999999999999998876553

>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}

Probab=97.26  E-value=0.00014  Score=54.22  Aligned_cols=25  Identities=16%  Similarity=0.191  Sum_probs=22.0

Q ss_pred             CeEEEEEcCCCCCchHHHHHHHHHh
Q 030464           78 GVHWAFIGSPRAKKHVYAEMLSKLL  102 (177)
Q Consensus        78 ~~~IlIiGpPGSGKSTlA~~LAk~l  102 (177)
                      +..|+|.|+||+|||++|+.|++..
T Consensus        24 ~~~vll~G~~GtGKt~lA~~i~~~~   48 (145)
T 3n70_A           24 DIAVWLYGAPGTGRMTGARYLHQFG   48 (145)
T ss_dssp             CSCEEEESSTTSSHHHHHHHHHHSS
T ss_pred             CCCEEEECCCCCCHHHHHHHHHHhC
Confidence            3458999999999999999999864

>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}

Probab=97.25  E-value=0.00051  Score=60.99  Aligned_cols=32  Identities=19%  Similarity=0.265  Sum_probs=28.6

Q ss_pred             eEEEEEcCCCCCchHHHHHHHHHhCCCeeeCc
Q 030464           79 VHWAFIGSPRAKKHVYAEMLSKLLEVPRISMS  110 (177)
Q Consensus        79 ~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~  110 (177)
                      ..++|.||||+||||+|+.|++.++..++.+.
T Consensus        51 ~~vLL~GppGtGKTtlAr~ia~~~~~~f~~l~   82 (447)
T 3pvs_A           51 HSMILWGPPGTGKTTLAEVIARYANADVERIS   82 (447)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHTTCEEEEEE
T ss_pred             cEEEEECCCCCcHHHHHHHHHHHhCCCeEEEE
Confidence            57999999999999999999999988777654

>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=97.21  E-value=0.00021  Score=64.12  Aligned_cols=32  Identities=16%  Similarity=0.102  Sum_probs=28.4

Q ss_pred             CeEEEEEcCCCCCchHHHHHHHHHhCCCeeeC
Q 030464           78 GVHWAFIGSPRAKKHVYAEMLSKLLEVPRISM  109 (177)
Q Consensus        78 ~~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~  109 (177)
                      +..++|.||||+|||++|+.+++.+|+.++.+
T Consensus        77 ~~~lLL~GppGtGKTtla~~la~~l~~~~i~i  108 (516)
T 1sxj_A           77 FRAAMLYGPPGIGKTTAAHLVAQELGYDILEQ  108 (516)
T ss_dssp             CSEEEEECSTTSSHHHHHHHHHHHTTCEEEEE
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHcCCCEEEE
Confidence            45789999999999999999999999887655

>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20

Probab=97.21  E-value=0.00068  Score=56.73  Aligned_cols=24  Identities=25%  Similarity=0.296  Sum_probs=22.3

Q ss_pred             eEEEEEcCCCCCchHHHHHHHHHh
Q 030464           79 VHWAFIGSPRAKKHVYAEMLSKLL  102 (177)
Q Consensus        79 ~~IlIiGpPGSGKSTlA~~LAk~l  102 (177)
                      ..++|.||||+||||+++.+++.+
T Consensus        45 ~~~li~G~~G~GKTtl~~~l~~~~   68 (389)
T 1fnn_A           45 PRATLLGRPGTGKTVTLRKLWELY   68 (389)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHH
Confidence            379999999999999999999987

>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A

Probab=97.19  E-value=0.00021  Score=63.04  Aligned_cols=39  Identities=21%  Similarity=0.176  Sum_probs=27.8

Q ss_pred             CCeEEEEEcCCCCCchHHHHHHHHHh-CCCe--eeCchhhhh
Q 030464           77 RGVHWAFIGSPRAKKHVYAEMLSKLL-EVPR--ISMSSIVRQ  115 (177)
Q Consensus        77 ~~~~IlIiGpPGSGKSTlA~~LAk~l-gl~~--Is~~dLlr~  115 (177)
                      .+..|+|.||||+|||++|+.+|+.+ +.++  ++..+++..
T Consensus       166 ~~~~vLL~GppGtGKT~lA~aia~~~~~~~~~~v~~~~l~~~  207 (444)
T 2zan_A          166 PWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVSK  207 (444)
T ss_dssp             CCSEEEEECSTTSSHHHHHHHHHHHCCSSEEEEECCC-----
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHcCCCCEEEEeHHHHHhh
Confidence            34679999999999999999999998 6554  455555543

>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*

Probab=97.18  E-value=0.0002  Score=58.93  Aligned_cols=31  Identities=23%  Similarity=0.230  Sum_probs=26.9

Q ss_pred             CeEEEEEcCCCCCchHHHHHHHHHhCCCeee
Q 030464           78 GVHWAFIGSPRAKKHVYAEMLSKLLEVPRIS  108 (177)
Q Consensus        78 ~~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is  108 (177)
                      +..++|.|+||+|||++|+.+++.++.+++.
T Consensus        38 ~~~vll~G~~GtGKT~la~~i~~~~~~~~~~   68 (324)
T 1hqc_A           38 LEHLLLFGPPGLGKTTLAHVIAHELGVNLRV   68 (324)
T ss_dssp             CCCCEEECCTTCCCHHHHHHHHHHHTCCEEE
T ss_pred             CCcEEEECCCCCCHHHHHHHHHHHhCCCEEE
Confidence            3568999999999999999999999877653

>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*

Probab=97.18  E-value=0.00021  Score=58.53  Aligned_cols=24  Identities=25%  Similarity=0.351  Sum_probs=22.2

Q ss_pred             eEEEEEcCCCCCchHHHHHHHHHh
Q 030464           79 VHWAFIGSPRAKKHVYAEMLSKLL  102 (177)
Q Consensus        79 ~~IlIiGpPGSGKSTlA~~LAk~l  102 (177)
                      ..++|.||||+|||++|+.|++.+
T Consensus        48 ~~~ll~G~~GtGKt~la~~la~~~   71 (311)
T 4fcw_A           48 GSFLFLGPTGVGKTELAKTLAATL   71 (311)
T ss_dssp             EEEEEESCSSSSHHHHHHHHHHHH
T ss_pred             eEEEEECCCCcCHHHHHHHHHHHH
Confidence            368999999999999999999986

>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*

Probab=97.16  E-value=0.00022  Score=54.06  Aligned_cols=38  Identities=13%  Similarity=-0.021  Sum_probs=22.9

Q ss_pred             CccccCccCcccCCCeEEEEEcCCCCCchHHHHHHHHH
Q 030464           64 SVTLPDTEGRERRRGVHWAFIGSPRAKKHVYAEMLSKL  101 (177)
Q Consensus        64 ~~~~~~~~~~~~~~~~~IlIiGpPGSGKSTlA~~LAk~  101 (177)
                      +.|-.-+.+....+.++|+|+|.+|+|||++..+|...
T Consensus         6 ~~~~~~~~~~~~~~~~ki~v~G~~~~GKSsli~~l~~~   43 (189)
T 1z06_A            6 HHHGSLVPRGSRSRIFKIIVIGDSNVGKTCLTYRFCAG   43 (189)
T ss_dssp             -------------CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred             cccccccCCCCCCceEEEEEECCCCCCHHHHHHHHHcC
Confidence            33444444445567899999999999999999999753

>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}

Probab=97.15  E-value=0.00023  Score=54.17  Aligned_cols=23  Identities=35%  Similarity=0.440  Sum_probs=21.3

Q ss_pred             EEEEEcCCCCCchHHHHHHHHHh
Q 030464           80 HWAFIGSPRAKKHVYAEMLSKLL  102 (177)
Q Consensus        80 ~IlIiGpPGSGKSTlA~~LAk~l  102 (177)
                      .++|.|+||+|||++++.+++.+
T Consensus        40 ~~ll~G~~G~GKT~l~~~l~~~~   62 (226)
T 2chg_A           40 HLLFSGPPGTGKTATAIALARDL   62 (226)
T ss_dssp             CEEEECSTTSSHHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHHH
Confidence            49999999999999999999875

>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*

Probab=97.15  E-value=0.00024  Score=59.21  Aligned_cols=37  Identities=11%  Similarity=-0.122  Sum_probs=28.6

Q ss_pred             CCeEEEEEcCCCCCchHHHHHHHHHh---CCC--eeeCchhh
Q 030464           77 RGVHWAFIGSPRAKKHVYAEMLSKLL---EVP--RISMSSIV  113 (177)
Q Consensus        77 ~~~~IlIiGpPGSGKSTlA~~LAk~l---gl~--~Is~~dLl  113 (177)
                      .+..++|.||||+||||+++.+++.+   +..  +++..++.
T Consensus        36 ~~~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~~~~~~   77 (324)
T 1l8q_A           36 LYNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSADDFA   77 (324)
T ss_dssp             SCSSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEHHHHH
T ss_pred             CCCeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEHHHHH
Confidence            34568999999999999999999977   554  55555543

>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*

Probab=97.15  E-value=0.00026  Score=54.24  Aligned_cols=26  Identities=27%  Similarity=0.336  Sum_probs=23.1

Q ss_pred             eEEEEEcCCCCCchHHHHHHHHHhCC
Q 030464           79 VHWAFIGSPRAKKHVYAEMLSKLLEV  104 (177)
Q Consensus        79 ~~IlIiGpPGSGKSTlA~~LAk~lgl  104 (177)
                      ..++|.|+||+|||++++.+++.++.
T Consensus        46 ~~~ll~G~~G~GKT~l~~~~~~~~~~   71 (250)
T 1njg_A           46 HAYLFSGTRGVGKTSIARLLAKGLNC   71 (250)
T ss_dssp             SEEEEECSTTSCHHHHHHHHHHHHHC
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhcC
Confidence            46899999999999999999998754

>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*

Probab=97.13  E-value=0.00058  Score=65.20  Aligned_cols=39  Identities=18%  Similarity=0.258  Sum_probs=32.8

Q ss_pred             CCeEEEEEcCCCCCchHHHHHHHHHhCCCeeeCc--hhhhh
Q 030464           77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMS--SIVRQ  115 (177)
Q Consensus        77 ~~~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~--dLlr~  115 (177)
                      .+..|++.||||+|||.+|+.+|...+.+++++.  +++..
T Consensus       510 ~~~gvLl~GPPGtGKT~lAkaiA~e~~~~f~~v~~~~l~s~  550 (806)
T 3cf2_A          510 PSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTM  550 (806)
T ss_dssp             CCSCCEEESSTTSSHHHHHHHHHHTTTCEEEECCHHHHHTT
T ss_pred             CCceEEEecCCCCCchHHHHHHHHHhCCceEEeccchhhcc
Confidence            4556899999999999999999999999988875  44443

>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1

Probab=97.13  E-value=0.00022  Score=55.94  Aligned_cols=26  Identities=15%  Similarity=-0.006  Sum_probs=21.8

Q ss_pred             CCeEEEEEcCCCCCchHHHHHHHHHh
Q 030464           77 RGVHWAFIGSPRAKKHVYAEMLSKLL  102 (177)
Q Consensus        77 ~~~~IlIiGpPGSGKSTlA~~LAk~l  102 (177)
                      ++..++|+||+||||||+.+.|...+
T Consensus         3 ~g~~i~lvGpsGaGKSTLl~~L~~~~   28 (198)
T 1lvg_A            3 GPRPVVLSGPSGAGKSTLLKKLFQEH   28 (198)
T ss_dssp             --CCEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence            34578999999999999999998865

>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}

Probab=97.12  E-value=0.00018  Score=60.01  Aligned_cols=30  Identities=20%  Similarity=0.233  Sum_probs=26.4

Q ss_pred             eEEEEEcCCCCCchHHHHHHHHHhCCCeee
Q 030464           79 VHWAFIGSPRAKKHVYAEMLSKLLEVPRIS  108 (177)
Q Consensus        79 ~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is  108 (177)
                      ..++|.||||+|||++|+.+++.++.+++.
T Consensus        47 ~~vll~G~pGtGKT~la~~la~~~~~~~~~   76 (331)
T 2r44_A           47 GHILLEGVPGLAKTLSVNTLAKTMDLDFHR   76 (331)
T ss_dssp             CCEEEESCCCHHHHHHHHHHHHHTTCCEEE
T ss_pred             CeEEEECCCCCcHHHHHHHHHHHhCCCeEE
Confidence            469999999999999999999999876543

>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*

Probab=97.11  E-value=0.00026  Score=59.46  Aligned_cols=27  Identities=22%  Similarity=0.223  Sum_probs=24.6

Q ss_pred             CeEEEEEcCCCCCchHHHHHHHHHhCC
Q 030464           78 GVHWAFIGSPRAKKHVYAEMLSKLLEV  104 (177)
Q Consensus        78 ~~~IlIiGpPGSGKSTlA~~LAk~lgl  104 (177)
                      +..++|.||||+|||++|+.+++.++.
T Consensus        70 ~~~vLl~GppGtGKT~la~~la~~l~~   96 (368)
T 3uk6_A           70 GRAVLIAGQPGTGKTAIAMGMAQALGP   96 (368)
T ss_dssp             TCEEEEEESTTSSHHHHHHHHHHHHCS
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHhcc
Confidence            468999999999999999999999874

>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}

Probab=97.10  E-value=0.00039  Score=62.88  Aligned_cols=31  Identities=26%  Similarity=0.308  Sum_probs=27.1

Q ss_pred             EEEEEcCCCCCchHHHHHHHHHhCCCeeeCc
Q 030464           80 HWAFIGSPRAKKHVYAEMLSKLLEVPRISMS  110 (177)
Q Consensus        80 ~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~  110 (177)
                      .|+|+||||+|||++++.|+...+.+++.+.
T Consensus        66 GvLL~GppGtGKTtLaraIa~~~~~~~i~i~   96 (499)
T 2dhr_A           66 GVLLVGPPGVGKTHLARAVAGEARVPFITAS   96 (499)
T ss_dssp             EEEEECSSSSSHHHHHHHHHHHTTCCEEEEE
T ss_pred             eEEEECCCCCCHHHHHHHHHHHhCCCEEEEe
Confidence            3999999999999999999999887766554

>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}

Probab=97.09  E-value=0.00033  Score=52.69  Aligned_cols=28  Identities=21%  Similarity=0.291  Sum_probs=24.4

Q ss_pred             ccCCCeEEEEEcCCCCCchHHHHHHHHH
Q 030464           74 ERRRGVHWAFIGSPRAKKHVYAEMLSKL  101 (177)
Q Consensus        74 ~~~~~~~IlIiGpPGSGKSTlA~~LAk~  101 (177)
                      .+.+..+|+|+|++|+||||+..+|...
T Consensus         3 ~~~~~~~i~lvG~~gvGKStL~~~l~~~   30 (188)
T 2wjg_A            3 SHMKSYEIALIGNPNVGKSTIFNALTGE   30 (188)
T ss_dssp             CCCCEEEEEEECSTTSSHHHHHHHHHTT
T ss_pred             CCCCCCEEEEECCCCCCHHHHHHHHhCC
Confidence            4457789999999999999999999863

>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}

Probab=97.09  E-value=0.00025  Score=56.34  Aligned_cols=27  Identities=22%  Similarity=0.124  Sum_probs=18.0

Q ss_pred             CCCeEEEEEcCCCCCchHHHHHHH-HHh
Q 030464           76 RRGVHWAFIGSPRAKKHVYAEMLS-KLL  102 (177)
Q Consensus        76 ~~~~~IlIiGpPGSGKSTlA~~LA-k~l  102 (177)
                      .++..|.|+||+||||||+++.|+ ..+
T Consensus        25 ~~G~ii~l~Gp~GsGKSTl~~~L~~~~~   52 (231)
T 3lnc_A           25 SVGVILVLSSPSGCGKTTVANKLLEKQK   52 (231)
T ss_dssp             ECCCEEEEECSCC----CHHHHHHC---
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHhcCC
Confidence            466789999999999999999999 655

>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*

Probab=97.09  E-value=0.00026  Score=52.38  Aligned_cols=30  Identities=13%  Similarity=0.050  Sum_probs=23.3

Q ss_pred             CcccCCCeEEEEEcCCCCCchHHHHHHHHH
Q 030464           72 GRERRRGVHWAFIGSPRAKKHVYAEMLSKL  101 (177)
Q Consensus        72 ~~~~~~~~~IlIiGpPGSGKSTlA~~LAk~  101 (177)
                      ...|.+.++|+|+|.+|+||||+..+|...
T Consensus         8 ~~~~~~~~~i~v~G~~~~GKssli~~l~~~   37 (179)
T 2y8e_A            8 FGNPLRKFKLVFLGEQSVGKTSLITRFMYD   37 (179)
T ss_dssp             ----CEEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred             ccCCCcceEEEEECCCCCCHHHHHHHHHcC
Confidence            344567789999999999999999999753

>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}

Probab=97.08  E-value=0.00011  Score=54.70  Aligned_cols=35  Identities=9%  Similarity=-0.124  Sum_probs=26.3

Q ss_pred             CeEEEEEcCCCCCchHHHHHHHHHhC-CCeeeCchh
Q 030464           78 GVHWAFIGSPRAKKHVYAEMLSKLLE-VPRISMSSI  112 (177)
Q Consensus        78 ~~~IlIiGpPGSGKSTlA~~LAk~lg-l~~Is~~dL  112 (177)
                      +..|+|.|+||+|||++|+.+++..+ +.+++..++
T Consensus        27 ~~~vll~G~~GtGKt~lA~~i~~~~~~~~~~~~~~~   62 (143)
T 3co5_A           27 TSPVFLTGEAGSPFETVARYFHKNGTPWVSPARVEY   62 (143)
T ss_dssp             SSCEEEEEETTCCHHHHHGGGCCTTSCEECCSSTTH
T ss_pred             CCcEEEECCCCccHHHHHHHHHHhCCCeEEechhhC
Confidence            34599999999999999999988776 223344443

>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}

Probab=97.07  E-value=0.00045  Score=61.30  Aligned_cols=26  Identities=27%  Similarity=0.307  Sum_probs=23.4

Q ss_pred             CCeEEEEEcCCCCCchHHHHHHHHHh
Q 030464           77 RGVHWAFIGSPRAKKHVYAEMLSKLL  102 (177)
Q Consensus        77 ~~~~IlIiGpPGSGKSTlA~~LAk~l  102 (177)
                      ....++|+|+||+|||++|+.|++.+
T Consensus       200 ~~~~~LL~G~pG~GKT~la~~la~~l  225 (468)
T 3pxg_A          200 TKNNPVLIGEPGVGKTAIAEGLAQQI  225 (468)
T ss_dssp             SSCEEEEESCTTTTTHHHHHHHHHHH
T ss_pred             CCCCeEEECCCCCCHHHHHHHHHHHH
Confidence            44578999999999999999999986

>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}

Probab=97.06  E-value=0.00034  Score=53.07  Aligned_cols=37  Identities=11%  Similarity=0.043  Sum_probs=25.5

Q ss_pred             ccccCccCcccCCCeEEEEEcCCCCCchHHHHHHHHH
Q 030464           65 VTLPDTEGRERRRGVHWAFIGSPRAKKHVYAEMLSKL  101 (177)
Q Consensus        65 ~~~~~~~~~~~~~~~~IlIiGpPGSGKSTlA~~LAk~  101 (177)
                      .+++......+.+.++|+|+|.+|+||||+..+|...
T Consensus        12 ~~~~~~~~~~~~~~~ki~v~G~~~~GKSsLi~~l~~~   48 (193)
T 2oil_A           12 SGLVPRGSEDYNFVFKVVLIGESGVGKTNLLSRFTRN   48 (193)
T ss_dssp             --------CCCSEEEEEEEESSTTSSHHHHHHHHHHS
T ss_pred             cccccccccccCcceEEEEECcCCCCHHHHHHHHhcC
Confidence            3444444455677899999999999999999999764

>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A

Probab=97.03  E-value=0.00039  Score=63.04  Aligned_cols=33  Identities=21%  Similarity=0.313  Sum_probs=28.1

Q ss_pred             CCeEEEEEcCCCCCchHHHHHHHHHhCCCeeeC
Q 030464           77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISM  109 (177)
Q Consensus        77 ~~~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~  109 (177)
                      ++..++|+||||+||||+|+.|+..++.+.+.+
T Consensus       107 ~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~i  139 (543)
T 3m6a_A          107 KGPILCLAGPPGVGKTSLAKSIAKSLGRKFVRI  139 (543)
T ss_dssp             CSCEEEEESSSSSSHHHHHHHHHHHHTCEEEEE
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHhcCCCeEEE
Confidence            566899999999999999999999987665443

>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}

Probab=97.02  E-value=0.0004  Score=58.32  Aligned_cols=26  Identities=12%  Similarity=0.126  Sum_probs=23.2

Q ss_pred             CCeEEEEEcCCCCCchHHHHHHHHHh
Q 030464           77 RGVHWAFIGSPRAKKHVYAEMLSKLL  102 (177)
Q Consensus        77 ~~~~IlIiGpPGSGKSTlA~~LAk~l  102 (177)
                      .+..++|.||||+|||++++.+++.+
T Consensus        44 ~~~~vll~G~~G~GKT~la~~l~~~~   69 (384)
T 2qby_B           44 VKFSNLFLGLTGTGKTFVSKYIFNEI   69 (384)
T ss_dssp             CCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred             CCCcEEEECCCCCCHHHHHHHHHHHH
Confidence            34579999999999999999999876

>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A

Probab=97.01  E-value=0.00027  Score=55.99  Aligned_cols=30  Identities=27%  Similarity=0.144  Sum_probs=24.8

Q ss_pred             EEEEcCCCCCchHHHHHHHHHhCCC--eeeCch
Q 030464           81 WAFIGSPRAKKHVYAEMLSKLLEVP--RISMSS  111 (177)
Q Consensus        81 IlIiGpPGSGKSTlA~~LAk~lgl~--~Is~~d  111 (177)
                      |+|+|++|||||++|++|++. +.+  |+.++.
T Consensus         2 ilV~Gg~~SGKS~~A~~la~~-~~~~~yiaT~~   33 (180)
T 1c9k_A            2 ILVTGGARSGKSRHAEALIGD-APQVLYIATSQ   33 (180)
T ss_dssp             EEEEECTTSSHHHHHHHHHCS-CSSEEEEECCC
T ss_pred             EEEECCCCCcHHHHHHHHHhc-CCCeEEEecCC
Confidence            789999999999999999987 654  555543

>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}

Probab=97.00  E-value=0.00035  Score=55.63  Aligned_cols=30  Identities=10%  Similarity=-0.011  Sum_probs=23.8

Q ss_pred             cccCCCeEEEEEcCCCCCchHHHHHHHHHh
Q 030464           73 RERRRGVHWAFIGSPRAKKHVYAEMLSKLL  102 (177)
Q Consensus        73 ~~~~~~~~IlIiGpPGSGKSTlA~~LAk~l  102 (177)
                      ....++..+.|+||+||||||+++.|+..+
T Consensus        18 l~i~~G~~~~lvGpsGsGKSTLl~~L~g~~   47 (218)
T 1z6g_A           18 GSMNNIYPLVICGPSGVGKGTLIKKLLNEF   47 (218)
T ss_dssp             ----CCCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred             eecCCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence            334567789999999999999999999876

>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A

Probab=96.99  E-value=0.00035  Score=55.32  Aligned_cols=22  Identities=14%  Similarity=0.048  Sum_probs=20.4

Q ss_pred             EEEEcCCCCCchHHHHHHHHHh
Q 030464           81 WAFIGSPRAKKHVYAEMLSKLL  102 (177)
Q Consensus        81 IlIiGpPGSGKSTlA~~LAk~l  102 (177)
                      |+|+||+||||+|++++|.+.+
T Consensus         4 IVi~GPSG~GK~Tl~~~L~~~~   25 (186)
T 1ex7_A            4 IVISGPSGTGKSTLLKKLFAEY   25 (186)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHC
T ss_pred             EEEECCCCCCHHHHHHHHHHhC
Confidence            7899999999999999998876

>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20

Probab=96.99  E-value=0.00035  Score=56.98  Aligned_cols=31  Identities=16%  Similarity=0.221  Sum_probs=25.8

Q ss_pred             CeEEEEEcCCCCCchHHHHHHHHHhCCCeee
Q 030464           78 GVHWAFIGSPRAKKHVYAEMLSKLLEVPRIS  108 (177)
Q Consensus        78 ~~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is  108 (177)
                      .-.++|.||||+|||++|..|++.++-..++
T Consensus        58 kn~ili~GPPGtGKTt~a~ala~~l~g~i~~   88 (212)
T 1tue_A           58 KNCLVFCGPANTGKSYFGMSFIHFIQGAVIS   88 (212)
T ss_dssp             CSEEEEESCGGGCHHHHHHHHHHHHTCEECC
T ss_pred             ccEEEEECCCCCCHHHHHHHHHHHhCCCeee
Confidence            3469999999999999999999987654444

>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*

Probab=96.99  E-value=0.00056  Score=50.29  Aligned_cols=28  Identities=18%  Similarity=0.052  Sum_probs=24.2

Q ss_pred             ccCCCeEEEEEcCCCCCchHHHHHHHHH
Q 030464           74 ERRRGVHWAFIGSPRAKKHVYAEMLSKL  101 (177)
Q Consensus        74 ~~~~~~~IlIiGpPGSGKSTlA~~LAk~  101 (177)
                      ...+.++|+|+|.+|+|||++..++...
T Consensus         3 ~~~~~~~i~v~G~~~~GKssl~~~l~~~   30 (171)
T 1upt_A            3 HMTREMRILILGLDGAGKTTILYRLQVG   30 (171)
T ss_dssp             CCSSCEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             CCCCccEEEEECCCCCCHHHHHHHHhcC
Confidence            3457789999999999999999999753

>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*

Probab=96.98  E-value=0.0004  Score=53.36  Aligned_cols=26  Identities=12%  Similarity=0.060  Sum_probs=23.1

Q ss_pred             CCCeEEEEEcCCCCCchHHHHHHHHH
Q 030464           76 RRGVHWAFIGSPRAKKHVYAEMLSKL  101 (177)
Q Consensus        76 ~~~~~IlIiGpPGSGKSTlA~~LAk~  101 (177)
                      ....+|+|+|++||||||+.+.|+..
T Consensus        27 ~~~~kv~lvG~~g~GKSTLl~~l~~~   52 (191)
T 1oix_A           27 DYLFKVVLIGDSGVGKSNLLSRFTRN   52 (191)
T ss_dssp             SEEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred             CcceEEEEECcCCCCHHHHHHHHhcC
Confidence            45689999999999999999999874

>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*

Probab=96.97  E-value=0.00057  Score=51.95  Aligned_cols=37  Identities=8%  Similarity=-0.036  Sum_probs=28.1

Q ss_pred             ccccCccCcccCCCeEEEEEcCCCCCchHHHHHHHHH
Q 030464           65 VTLPDTEGRERRRGVHWAFIGSPRAKKHVYAEMLSKL  101 (177)
Q Consensus        65 ~~~~~~~~~~~~~~~~IlIiGpPGSGKSTlA~~LAk~  101 (177)
                      -|........+.+.++|+|+|.+|+|||++..+|...
T Consensus         8 ~~~~~~~~~~~~~~~ki~v~G~~~~GKSsli~~l~~~   44 (191)
T 2a5j_A            8 HHHSSGLVPRGSYLFKYIIIGDTGVGKSCLLLQFTDK   44 (191)
T ss_dssp             --CCCCCCCTTCEEEEEEEESSTTSSHHHHHHHHHHS
T ss_pred             cccccccccccCcceEEEEECcCCCCHHHHHHHHhcC
Confidence            3444444555567899999999999999999999764

>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}

Probab=96.97  E-value=0.0004  Score=57.75  Aligned_cols=34  Identities=9%  Similarity=0.118  Sum_probs=27.6

Q ss_pred             CCeEEEEEcCCCCCchHHHHHHHHHh------CCCeeeCc
Q 030464           77 RGVHWAFIGSPRAKKHVYAEMLSKLL------EVPRISMS  110 (177)
Q Consensus        77 ~~~~IlIiGpPGSGKSTlA~~LAk~l------gl~~Is~~  110 (177)
                      .+..++|.|+||+||||+++.+++.+      +..++.+.
T Consensus        44 ~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~   83 (386)
T 2qby_A           44 KPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYIN   83 (386)
T ss_dssp             CCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEE
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEE
Confidence            45578999999999999999999977      66655543

>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=96.97  E-value=0.0004  Score=54.15  Aligned_cols=37  Identities=11%  Similarity=0.062  Sum_probs=24.8

Q ss_pred             ccccCccCcccCCCeEEEEEcCCCCCchHHHHHHHHH
Q 030464           65 VTLPDTEGRERRRGVHWAFIGSPRAKKHVYAEMLSKL  101 (177)
Q Consensus        65 ~~~~~~~~~~~~~~~~IlIiGpPGSGKSTlA~~LAk~  101 (177)
                      -+++........+.++|+|+|.+|+||||+..+|...
T Consensus        13 ~~~~~~~~~~~~~~~ki~lvG~~~vGKSsLi~~l~~~   49 (201)
T 2ew1_A           13 GLVPRGSMEDYDFLFKIVLIGNAGVGKTCLVRRFTQG   49 (201)
T ss_dssp             ---------CCSEEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred             cccCCCCccccccceEEEEECcCCCCHHHHHHHHHhC
Confidence            3444444455567899999999999999999998764

>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*

Probab=96.97  E-value=0.00044  Score=62.21  Aligned_cols=34  Identities=12%  Similarity=0.059  Sum_probs=28.8

Q ss_pred             CCeEEEEEcCCCCCchHHHHHHHHHhCCCeeeCc
Q 030464           77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMS  110 (177)
Q Consensus        77 ~~~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~  110 (177)
                      .+..|+|.||||+|||++|+.+++..+.+++.+.
T Consensus       237 ~~~~vLL~GppGtGKT~lAraia~~~~~~fv~vn  270 (489)
T 3hu3_A          237 PPRGILLYGPPGTGKTLIARAVANETGAFFFLIN  270 (489)
T ss_dssp             CCCEEEEECSTTSSHHHHHHHHHHHCSSEEEEEE
T ss_pred             CCCcEEEECcCCCCHHHHHHHHHHHhCCCEEEEE
Confidence            3456999999999999999999999987766543

>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*

Probab=96.96  E-value=0.00046  Score=52.75  Aligned_cols=39  Identities=23%  Similarity=0.160  Sum_probs=27.0

Q ss_pred             CCCeEEEEEcCCCCCchHHHHHHHHHhCCCeeeCchhhhhcc
Q 030464           76 RRGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDL  117 (177)
Q Consensus        76 ~~~~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~dLlr~el  117 (177)
                      .++-.+.|+|++||||||+++.+..  +...++. +.++..+
T Consensus         7 ~~gei~~l~G~nGsGKSTl~~~~~~--~~~~~~~-d~~~g~~   45 (171)
T 4gp7_A            7 PELSLVVLIGSSGSGKSTFAKKHFK--PTEVISS-DFCRGLM   45 (171)
T ss_dssp             ESSEEEEEECCTTSCHHHHHHHHSC--GGGEEEH-HHHHHHH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHcc--CCeEEcc-HHHHHHh
Confidence            4667899999999999999997542  3444543 3444433

>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A

Probab=96.95  E-value=0.00059  Score=59.60  Aligned_cols=34  Identities=21%  Similarity=0.244  Sum_probs=29.0

Q ss_pred             cCCCeEEEEEcCCCCCchHHHHHHHHHhCCCeee
Q 030464           75 RRRGVHWAFIGSPRAKKHVYAEMLSKLLEVPRIS  108 (177)
Q Consensus        75 ~~~~~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is  108 (177)
                      ..++..|+|.||||+||||+++.|+..++..++.
T Consensus       166 i~~~~~i~l~G~~GsGKSTl~~~l~~~~~g~~~~  199 (377)
T 1svm_A          166 IPKKRYWLFKGPIDSGKTTLAAALLELCGGKALN  199 (377)
T ss_dssp             CTTCCEEEEECSTTSSHHHHHHHHHHHHCCEEEC
T ss_pred             cCCCCEEEEECCCCCCHHHHHHHHHhhcCCcEEE
Confidence            3466689999999999999999999988776665

>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*

Probab=96.94  E-value=0.00037  Score=56.24  Aligned_cols=25  Identities=24%  Similarity=0.165  Sum_probs=22.4

Q ss_pred             eEEEEEcCCCCCchHHHHHHHHHhC
Q 030464           79 VHWAFIGSPRAKKHVYAEMLSKLLE  103 (177)
Q Consensus        79 ~~IlIiGpPGSGKSTlA~~LAk~lg  103 (177)
                      ..|+|.|+||+|||++|+.|++..+
T Consensus        30 ~~vll~G~~GtGKt~la~~i~~~~~   54 (265)
T 2bjv_A           30 KPVLIIGERGTGKELIASRLHYLSS   54 (265)
T ss_dssp             SCEEEECCTTSCHHHHHHHHHHTST
T ss_pred             CCEEEECCCCCcHHHHHHHHHHhcC
Confidence            5689999999999999999998764

>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0

Probab=96.88  E-value=0.00066  Score=51.83  Aligned_cols=30  Identities=7%  Similarity=-0.068  Sum_probs=24.2

Q ss_pred             CcccCCCeEEEEEcCCCCCchHHHHHHHHH
Q 030464           72 GRERRRGVHWAFIGSPRAKKHVYAEMLSKL  101 (177)
Q Consensus        72 ~~~~~~~~~IlIiGpPGSGKSTlA~~LAk~  101 (177)
                      .....+.++|+|+|.+|+|||++..++...
T Consensus        14 ~~~~~~~~ki~ivG~~~vGKSsL~~~~~~~   43 (184)
T 3ihw_A           14 LYFQGPELKVGIVGNLSSGKSALVHRYLTG   43 (184)
T ss_dssp             --CCCCEEEEEEECCTTSCHHHHHHHHHHS
T ss_pred             CCCCCCeeEEEEECCCCCCHHHHHHHHhcC
Confidence            334467899999999999999999888664

>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*

Probab=96.88  E-value=0.00063  Score=49.41  Aligned_cols=25  Identities=16%  Similarity=0.089  Sum_probs=22.3

Q ss_pred             CCeEEEEEcCCCCCchHHHHHHHHH
Q 030464           77 RGVHWAFIGSPRAKKHVYAEMLSKL  101 (177)
Q Consensus        77 ~~~~IlIiGpPGSGKSTlA~~LAk~  101 (177)
                      +..+|+|+|++|+||||+..++...
T Consensus         2 ~~~~i~v~G~~~~GKSsli~~l~~~   26 (167)
T 1kao_A            2 REYKVVVLGSGGVGKSALTVQFVTG   26 (167)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred             cEEEEEEECCCCCCHHHHHHHHHcC
Confidence            5689999999999999999998764

>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A

Probab=96.87  E-value=0.00062  Score=53.32  Aligned_cols=30  Identities=13%  Similarity=0.102  Sum_probs=24.3

Q ss_pred             ccCCCeEEEEEcCCCCCchHHHHHHHHHhC
Q 030464           74 ERRRGVHWAFIGSPRAKKHVYAEMLSKLLE  103 (177)
Q Consensus        74 ~~~~~~~IlIiGpPGSGKSTlA~~LAk~lg  103 (177)
                      ...++-.+.|+||+||||||+++.|+..+.
T Consensus        16 ~i~~Gei~~l~GpnGsGKSTLl~~l~gl~~   45 (207)
T 1znw_A           16 PAAVGRVVVLSGPSAVGKSTVVRCLRERIP   45 (207)
T ss_dssp             ---CCCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred             CCCCCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence            446777899999999999999999988763

>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*

Probab=96.87  E-value=0.00062  Score=49.78  Aligned_cols=26  Identities=12%  Similarity=0.119  Sum_probs=22.8

Q ss_pred             CCCeEEEEEcCCCCCchHHHHHHHHH
Q 030464           76 RRGVHWAFIGSPRAKKHVYAEMLSKL  101 (177)
Q Consensus        76 ~~~~~IlIiGpPGSGKSTlA~~LAk~  101 (177)
                      .+.++|+|+|++|+||||+..+|...
T Consensus         3 ~~~~~i~v~G~~~~GKssl~~~l~~~   28 (168)
T 1z2a_A            3 EVAIKMVVVGNGAVGKSSMIQRYCKG   28 (168)
T ss_dssp             -CEEEEEEECSTTSSHHHHHHHHHHC
T ss_pred             ceeEEEEEECcCCCCHHHHHHHHHcC
Confidence            46789999999999999999999764

>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}

Probab=96.87  E-value=0.00044  Score=58.21  Aligned_cols=38  Identities=13%  Similarity=0.090  Sum_probs=29.5

Q ss_pred             CeEEEEEcCCCCCchHHHHHHHHHhC----CC--eeeCchhhhh
Q 030464           78 GVHWAFIGSPRAKKHVYAEMLSKLLE----VP--RISMSSIVRQ  115 (177)
Q Consensus        78 ~~~IlIiGpPGSGKSTlA~~LAk~lg----l~--~Is~~dLlr~  115 (177)
                      ...++|.||||+|||++|..|+..+.    ..  ++++.+++..
T Consensus       152 ~~~lll~G~~GtGKT~La~aia~~~~~~~g~~v~~~~~~~l~~~  195 (308)
T 2qgz_A          152 QKGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLLHFPSFAID  195 (308)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEEEEHHHHHHH
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEHHHHHHH
Confidence            56899999999999999999987543    43  4676666654

>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}

Probab=96.87  E-value=0.00081  Score=62.78  Aligned_cols=26  Identities=27%  Similarity=0.307  Sum_probs=23.7

Q ss_pred             CCeEEEEEcCCCCCchHHHHHHHHHh
Q 030464           77 RGVHWAFIGSPRAKKHVYAEMLSKLL  102 (177)
Q Consensus        77 ~~~~IlIiGpPGSGKSTlA~~LAk~l  102 (177)
                      .+..++|+||||+|||++|+.||+.+
T Consensus       200 ~~~~vLL~G~pGtGKT~la~~la~~l  225 (758)
T 3pxi_A          200 TKNNPVLIGEPGVGKTAIAEGLAQQI  225 (758)
T ss_dssp             SSCEEEEESCTTTTTHHHHHHHHHHH
T ss_pred             CCCCeEEECCCCCCHHHHHHHHHHHH
Confidence            45579999999999999999999997

>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*

Probab=96.87  E-value=0.00056  Score=51.69  Aligned_cols=28  Identities=11%  Similarity=0.195  Sum_probs=23.1

Q ss_pred             ccCCCeEEEEEcCCCCCchHHHHHHHHH
Q 030464           74 ERRRGVHWAFIGSPRAKKHVYAEMLSKL  101 (177)
Q Consensus        74 ~~~~~~~IlIiGpPGSGKSTlA~~LAk~  101 (177)
                      ...+.++|+|+|.+|+|||++..+|...
T Consensus         3 ~~~~~~ki~v~G~~~vGKSsli~~l~~~   30 (184)
T 1m7b_A            3 NQNVKCKIVVVGDSQCGKTALLHVFAKD   30 (184)
T ss_dssp             ---CEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred             CCceEEEEEEECCCCCCHHHHHHHHhcC
Confidence            3457789999999999999999999864

>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G

Probab=96.86  E-value=0.00041  Score=57.60  Aligned_cols=24  Identities=21%  Similarity=0.188  Sum_probs=22.3

Q ss_pred             EEEEEcCCCCCchHHHHHHHHHhC
Q 030464           80 HWAFIGSPRAKKHVYAEMLSKLLE  103 (177)
Q Consensus        80 ~IlIiGpPGSGKSTlA~~LAk~lg  103 (177)
                      .++|.|+||+|||++|+.+++.++
T Consensus        47 ~vLl~G~~GtGKT~la~~la~~~~   70 (350)
T 1g8p_A           47 GVLVFGDRGTGKSTAVRALAALLP   70 (350)
T ss_dssp             CEEEECCGGGCTTHHHHHHHHHSC
T ss_pred             eEEEECCCCccHHHHHHHHHHhCc
Confidence            499999999999999999999876

>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*

Probab=96.85  E-value=0.00076  Score=57.16  Aligned_cols=28  Identities=29%  Similarity=0.226  Sum_probs=25.0

Q ss_pred             cCCCeEEEEEcCCCCCchHHHHHHHHHh
Q 030464           75 RRRGVHWAFIGSPRAKKHVYAEMLSKLL  102 (177)
Q Consensus        75 ~~~~~~IlIiGpPGSGKSTlA~~LAk~l  102 (177)
                      ..++..|.|+|++||||||+++.|+..+
T Consensus        87 ~~~g~ivgI~G~sGsGKSTL~~~L~gll  114 (312)
T 3aez_A           87 RPVPFIIGVAGSVAVGKSTTARVLQALL  114 (312)
T ss_dssp             SCCCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CCCCEEEEEECCCCchHHHHHHHHHhhc
Confidence            4577889999999999999999998865

>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*

Probab=96.85  E-value=0.00046  Score=57.20  Aligned_cols=32  Identities=16%  Similarity=0.061  Sum_probs=26.3

Q ss_pred             eEEEEEcCCCCCchHHHHHHHHHhCCCeeeCc
Q 030464           79 VHWAFIGSPRAKKHVYAEMLSKLLEVPRISMS  110 (177)
Q Consensus        79 ~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~  110 (177)
                      ..+++.||||+|||++++.+++.++..++.+.
T Consensus        49 ~~~L~~G~~G~GKT~la~~la~~l~~~~~~i~   80 (324)
T 3u61_B           49 HIILHSPSPGTGKTTVAKALCHDVNADMMFVN   80 (324)
T ss_dssp             SEEEECSSTTSSHHHHHHHHHHHTTEEEEEEE
T ss_pred             eEEEeeCcCCCCHHHHHHHHHHHhCCCEEEEc
Confidence            45667778999999999999999987766554

>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}

Probab=96.84  E-value=0.00031  Score=64.26  Aligned_cols=37  Identities=27%  Similarity=0.288  Sum_probs=29.6

Q ss_pred             CCCeEEEEEcCCCCCchHHHHHHHHHhC------CCeeeCchh
Q 030464           76 RRGVHWAFIGSPRAKKHVYAEMLSKLLE------VPRISMSSI  112 (177)
Q Consensus        76 ~~~~~IlIiGpPGSGKSTlA~~LAk~lg------l~~Is~~dL  112 (177)
                      .++..|+|+|++||||||+++.|++.++      +.+++-+++
T Consensus       367 ~~G~iI~LiG~sGSGKSTLar~La~~L~~~~G~~i~~lDgD~~  409 (552)
T 3cr8_A          367 RQGFTVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLDGDIV  409 (552)
T ss_dssp             GSCEEEEEEESSCHHHHHHHHHHHHHHHTTCSSCEEEESSHHH
T ss_pred             ccceEEEEECCCCChHHHHHHHHHHhhcccCCceEEEECCcHH
Confidence            3667899999999999999999999874      334665444

>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...

Probab=96.83  E-value=0.00068  Score=49.08  Aligned_cols=25  Identities=12%  Similarity=0.081  Sum_probs=22.2

Q ss_pred             CCeEEEEEcCCCCCchHHHHHHHHH
Q 030464           77 RGVHWAFIGSPRAKKHVYAEMLSKL  101 (177)
Q Consensus        77 ~~~~IlIiGpPGSGKSTlA~~LAk~  101 (177)
                      +.++|+|+|.+|+||||+..+|...
T Consensus         2 ~~~~i~v~G~~~~GKssl~~~l~~~   26 (166)
T 2ce2_X            2 TEYKLVVVGAGGVGKSALTIQLIQN   26 (166)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred             ceeEEEEECCCCCCHHHHHHHHHhC
Confidence            4578999999999999999999764

>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*

Probab=96.83  E-value=0.00079  Score=50.97  Aligned_cols=26  Identities=12%  Similarity=0.050  Sum_probs=23.1

Q ss_pred             CCCeEEEEEcCCCCCchHHHHHHHHH
Q 030464           76 RRGVHWAFIGSPRAKKHVYAEMLSKL  101 (177)
Q Consensus        76 ~~~~~IlIiGpPGSGKSTlA~~LAk~  101 (177)
                      ...++|+|+|.+|+||||+..+|...
T Consensus        20 ~~~~ki~vvG~~~~GKSsli~~l~~~   45 (189)
T 2gf9_A           20 DYMFKLLLIGNSSVGKTSFLFRYADD   45 (189)
T ss_dssp             SEEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             CceeEEEEECCCCCCHHHHHHHHHcC
Confidence            46689999999999999999999764

>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*

Probab=96.80  E-value=0.00076  Score=54.27  Aligned_cols=28  Identities=18%  Similarity=0.153  Sum_probs=24.0

Q ss_pred             CCCeEEEEEcCCCCCchHHHHHHHHHhC
Q 030464           76 RRGVHWAFIGSPRAKKHVYAEMLSKLLE  103 (177)
Q Consensus        76 ~~~~~IlIiGpPGSGKSTlA~~LAk~lg  103 (177)
                      .++-.++|+||+||||||+.+.|+..+.
T Consensus        14 ~~G~ii~l~GpsGsGKSTLlk~L~g~~~   41 (219)
T 1s96_A           14 AQGTLYIVSAPSGAGKSSLIQALLKTQP   41 (219)
T ss_dssp             -CCCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHhccCC
Confidence            4667899999999999999999998764

>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*

Probab=96.79  E-value=0.00055  Score=54.65  Aligned_cols=28  Identities=18%  Similarity=0.180  Sum_probs=24.7

Q ss_pred             ccCCCeEEEEEcCCCCCchHHHHHHHHH
Q 030464           74 ERRRGVHWAFIGSPRAKKHVYAEMLSKL  101 (177)
Q Consensus        74 ~~~~~~~IlIiGpPGSGKSTlA~~LAk~  101 (177)
                      ...++..|.|.|+.||||||+++.|+..
T Consensus        16 ~~~~g~~i~i~G~~GsGKSTl~~~L~~~   43 (230)
T 2vp4_A           16 EGTQPFTVLIEGNIGSGKTTYLNHFEKY   43 (230)
T ss_dssp             TTCCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred             CCCCceEEEEECCCCCCHHHHHHHHHhc
Confidence            3357788999999999999999999887

>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}

Probab=96.79  E-value=0.00084  Score=51.98  Aligned_cols=35  Identities=14%  Similarity=0.219  Sum_probs=26.7

Q ss_pred             CCCeEEEEEcCCCCCchHHHHHHHHHh-----CCCeeeCc
Q 030464           76 RRGVHWAFIGSPRAKKHVYAEMLSKLL-----EVPRISMS  110 (177)
Q Consensus        76 ~~~~~IlIiGpPGSGKSTlA~~LAk~l-----gl~~Is~~  110 (177)
                      .++-.++|+|+||+||||+++.|+...     .+.+++..
T Consensus        21 ~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~~~   60 (235)
T 2w0m_A           21 PQGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVTTE   60 (235)
T ss_dssp             ETTCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEESS
T ss_pred             cCCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEEcc
Confidence            466778999999999999999998543     34455543

>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*

Probab=96.78  E-value=0.00075  Score=52.47  Aligned_cols=29  Identities=14%  Similarity=0.061  Sum_probs=24.8

Q ss_pred             ccCCCeEEEEEcCCCCCchHHHHHHHHHh
Q 030464           74 ERRRGVHWAFIGSPRAKKHVYAEMLSKLL  102 (177)
Q Consensus        74 ~~~~~~~IlIiGpPGSGKSTlA~~LAk~l  102 (177)
                      ...++-.+.|+||+||||||+++.|+...
T Consensus        21 gi~~G~~~~l~G~nGsGKSTll~~l~g~~   49 (231)
T 4a74_A           21 GIETQAITEVFGEFGSGKTQLAHTLAVMV   49 (231)
T ss_dssp             SEESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred             CCCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence            34577789999999999999999998743

>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*

Probab=96.78  E-value=0.0008  Score=62.60  Aligned_cols=38  Identities=26%  Similarity=0.325  Sum_probs=29.7

Q ss_pred             CCe-EEEEEcCCCCCchHHHHHHHHHhCCCe--eeCchhhh
Q 030464           77 RGV-HWAFIGSPRAKKHVYAEMLSKLLEVPR--ISMSSIVR  114 (177)
Q Consensus        77 ~~~-~IlIiGpPGSGKSTlA~~LAk~lgl~~--Is~~dLlr  114 (177)
                      ++. .++|.||||+|||++|+.|++.++.++  +++.++..
T Consensus       486 ~p~~~~ll~G~~GtGKT~la~~la~~l~~~~~~i~~s~~~~  526 (758)
T 1r6b_X          486 KPVGSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYME  526 (758)
T ss_dssp             SCSEEEEEECSTTSSHHHHHHHHHHHHTCEEEEEEGGGCSS
T ss_pred             CCceEEEEECCCCCcHHHHHHHHHHHhcCCEEEEechhhcc
Confidence            443 689999999999999999999998654  45555443

>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=96.78  E-value=0.00068  Score=56.22  Aligned_cols=24  Identities=33%  Similarity=0.364  Sum_probs=21.7

Q ss_pred             EEEEEcCCCCCchHHHHHHHHHhC
Q 030464           80 HWAFIGSPRAKKHVYAEMLSKLLE  103 (177)
Q Consensus        80 ~IlIiGpPGSGKSTlA~~LAk~lg  103 (177)
                      .++|.||||+||||+++.+++.++
T Consensus        60 ~~ll~G~~G~GKT~la~~la~~l~   83 (353)
T 1sxj_D           60 HMLFYGPPGTGKTSTILALTKELY   83 (353)
T ss_dssp             CEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhC
Confidence            499999999999999999998753

>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}

Probab=96.74  E-value=0.00091  Score=51.24  Aligned_cols=29  Identities=14%  Similarity=0.149  Sum_probs=22.2

Q ss_pred             cccCCCeEEEEEcCCCCCchHHHHHHHHH
Q 030464           73 RERRRGVHWAFIGSPRAKKHVYAEMLSKL  101 (177)
Q Consensus        73 ~~~~~~~~IlIiGpPGSGKSTlA~~LAk~  101 (177)
                      ....+.++|+|+|.+|+|||++..+|...
T Consensus        23 ~~~~~~~ki~v~G~~~~GKSsli~~l~~~   51 (199)
T 2p5s_A           23 FSSQKAYKIVLAGDAAVGKSSFLMRLCKN   51 (199)
T ss_dssp             -----CEEEEEESSTTSSHHHHHHHHHHC
T ss_pred             cCcCCCeEEEEECcCCCCHHHHHHHHHhC
Confidence            34467899999999999999999999753

>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*

Probab=96.74  E-value=0.00095  Score=48.51  Aligned_cols=25  Identities=12%  Similarity=-0.071  Sum_probs=22.5

Q ss_pred             CCeEEEEEcCCCCCchHHHHHHHHH
Q 030464           77 RGVHWAFIGSPRAKKHVYAEMLSKL  101 (177)
Q Consensus        77 ~~~~IlIiGpPGSGKSTlA~~LAk~  101 (177)
                      +..+|+|+|.+|+||||+..+|...
T Consensus         3 ~~~~i~v~G~~~~GKssl~~~l~~~   27 (168)
T 1u8z_A            3 ALHKVIMVGSGGVGKSALTLQFMYD   27 (168)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             ceEEEEEECCCCCCHHHHHHHHHhC
Confidence            5689999999999999999999764

>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*

Probab=96.74  E-value=0.00085  Score=51.88  Aligned_cols=36  Identities=19%  Similarity=0.068  Sum_probs=27.9

Q ss_pred             cCCCeEEEEEcCCCCCchHHHHHHHHHhC--CCeeeCc
Q 030464           75 RRRGVHWAFIGSPRAKKHVYAEMLSKLLE--VPRISMS  110 (177)
Q Consensus        75 ~~~~~~IlIiGpPGSGKSTlA~~LAk~lg--l~~Is~~  110 (177)
                      ..++-.++|+|+||+||||++..++...+  +.+++..
T Consensus        17 i~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~v~~i~~~   54 (220)
T 2cvh_A           17 FAPGVLTQVYGPYASGKTTLALQTGLLSGKKVAYVDTE   54 (220)
T ss_dssp             BCTTSEEEEECSTTSSHHHHHHHHHHHHCSEEEEEESS
T ss_pred             CcCCEEEEEECCCCCCHHHHHHHHHHHcCCcEEEEECC
Confidence            45677899999999999999999987433  4455554

>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*

Probab=96.73  E-value=0.001  Score=49.33  Aligned_cols=26  Identities=12%  Similarity=0.179  Sum_probs=23.0

Q ss_pred             CCCeEEEEEcCCCCCchHHHHHHHHH
Q 030464           76 RRGVHWAFIGSPRAKKHVYAEMLSKL  101 (177)
Q Consensus        76 ~~~~~IlIiGpPGSGKSTlA~~LAk~  101 (177)
                      .+.++|+|+|.+|+|||++..+|...
T Consensus         4 ~~~~ki~v~G~~~~GKssl~~~l~~~   29 (178)
T 2hxs_A            4 MRQLKIVVLGDGASGKTSLTTCFAQE   29 (178)
T ss_dssp             CCEEEEEEECCTTSSHHHHHHHHHGG
T ss_pred             CceEEEEEECcCCCCHHHHHHHHHhC
Confidence            46789999999999999999999753

>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...

Probab=96.73  E-value=0.0011  Score=50.90  Aligned_cols=26  Identities=15%  Similarity=0.088  Sum_probs=23.2

Q ss_pred             CCCeEEEEEcCCCCCchHHHHHHHHH
Q 030464           76 RRGVHWAFIGSPRAKKHVYAEMLSKL  101 (177)
Q Consensus        76 ~~~~~IlIiGpPGSGKSTlA~~LAk~  101 (177)
                      ...++|+|+|.+|+|||++..++...
T Consensus        23 ~~~~ki~vvG~~~~GKSsli~~l~~~   48 (201)
T 2gco_A           23 AIRKKLVIVGDGACGKTCLLIVFSKD   48 (201)
T ss_dssp             CEEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred             ccceEEEEECCCCCCHHHHHHHHHhC
Confidence            46789999999999999999999864

>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*

Probab=96.72  E-value=0.001  Score=48.59  Aligned_cols=25  Identities=16%  Similarity=0.133  Sum_probs=22.3

Q ss_pred             CCeEEEEEcCCCCCchHHHHHHHHH
Q 030464           77 RGVHWAFIGSPRAKKHVYAEMLSKL  101 (177)
Q Consensus        77 ~~~~IlIiGpPGSGKSTlA~~LAk~  101 (177)
                      +..+|+|+|.+|+||||+..+|...
T Consensus         2 ~~~ki~v~G~~~~GKssli~~l~~~   26 (167)
T 1c1y_A            2 REYKLVVLGSGGVGKSALTVQFVQG   26 (167)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHC
T ss_pred             ceeEEEEECCCCCCHHHHHHHHHcC
Confidence            4679999999999999999999763

>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}

Probab=96.71  E-value=0.001  Score=50.60  Aligned_cols=27  Identities=11%  Similarity=-0.095  Sum_probs=23.5

Q ss_pred             cCCCeEEEEEcCCCCCchHHHHHHHHH
Q 030464           75 RRRGVHWAFIGSPRAKKHVYAEMLSKL  101 (177)
Q Consensus        75 ~~~~~~IlIiGpPGSGKSTlA~~LAk~  101 (177)
                      +.+.++|+|+|.+|+||||+..+|...
T Consensus        11 ~~~~~ki~v~G~~~~GKSsli~~l~~~   37 (206)
T 2bov_A           11 SLALHKVIMVGSGGVGKSALTLQFMYD   37 (206)
T ss_dssp             CCCEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             CCceEEEEEECCCCCCHHHHHHHHHhC
Confidence            356789999999999999999999754

>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20

Probab=96.69  E-value=0.001  Score=54.33  Aligned_cols=25  Identities=32%  Similarity=0.345  Sum_probs=22.3

Q ss_pred             eEEEEEcCCCCCchHHHHHHHHHhC
Q 030464           79 VHWAFIGSPRAKKHVYAEMLSKLLE  103 (177)
Q Consensus        79 ~~IlIiGpPGSGKSTlA~~LAk~lg  103 (177)
                      ..++|.||||+|||++|+.+++.++
T Consensus        47 ~~~ll~G~~G~GKT~la~~l~~~l~   71 (327)
T 1iqp_A           47 PHLLFAGPPGVGKTTAALALARELF   71 (327)
T ss_dssp             CEEEEESCTTSSHHHHHHHHHHHHH
T ss_pred             CeEEEECcCCCCHHHHHHHHHHHhc
Confidence            3599999999999999999999863

>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10

Probab=96.69  E-value=0.001  Score=51.97  Aligned_cols=26  Identities=15%  Similarity=0.175  Sum_probs=22.2

Q ss_pred             CCeEEEEEcCCCCCchHHHHHHHHHh
Q 030464           77 RGVHWAFIGSPRAKKHVYAEMLSKLL  102 (177)
Q Consensus        77 ~~~~IlIiGpPGSGKSTlA~~LAk~l  102 (177)
                      ++..|.|+|++||||||++.+|+..+
T Consensus         3 ~~~~i~i~G~sGsGKTTl~~~L~~~l   28 (169)
T 1xjc_A            3 AMNVWQVVGYKHSGKTTLMEKWVAAA   28 (169)
T ss_dssp             -CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHhh
Confidence            35678899999999999999998864

>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*

Probab=96.69  E-value=0.00093  Score=49.46  Aligned_cols=26  Identities=8%  Similarity=-0.031  Sum_probs=22.9

Q ss_pred             CCCeEEEEEcCCCCCchHHHHHHHHH
Q 030464           76 RRGVHWAFIGSPRAKKHVYAEMLSKL  101 (177)
Q Consensus        76 ~~~~~IlIiGpPGSGKSTlA~~LAk~  101 (177)
                      .+.++|+|+|++|+||||+..+|...
T Consensus         5 ~~~~~i~v~G~~~~GKSsli~~l~~~   30 (177)
T 1wms_A            5 SSLFKVILLGDGGVGKSSLMNRYVTN   30 (177)
T ss_dssp             EEEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred             cceeEEEEECCCCCCHHHHHHHHHcC
Confidence            45689999999999999999999753

>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}

Probab=96.68  E-value=0.0014  Score=48.96  Aligned_cols=26  Identities=15%  Similarity=0.148  Sum_probs=23.5

Q ss_pred             CCCeEEEEEcCCCCCchHHHHHHHHH
Q 030464           76 RRGVHWAFIGSPRAKKHVYAEMLSKL  101 (177)
Q Consensus        76 ~~~~~IlIiGpPGSGKSTlA~~LAk~  101 (177)
                      .+.++|+|+|.+|+||||+..+|...
T Consensus         5 ~~~~ki~v~G~~~~GKSsli~~l~~~   30 (208)
T 3clv_A            5 KSSYKTVLLGESSVGKSSIVLRLTKD   30 (208)
T ss_dssp             CSSEEEEEECCTTSSHHHHHHHHHHS
T ss_pred             CcceEEEEECCCCCCHHHHHHHHHhC
Confidence            46789999999999999999999875

>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*

Probab=96.65  E-value=0.001  Score=50.43  Aligned_cols=26  Identities=8%  Similarity=0.284  Sum_probs=23.3

Q ss_pred             CCCeEEEEEcCCCCCchHHHHHHHHH
Q 030464           76 RRGVHWAFIGSPRAKKHVYAEMLSKL  101 (177)
Q Consensus        76 ~~~~~IlIiGpPGSGKSTlA~~LAk~  101 (177)
                      .+.++|+|+|.+|+|||++..+|...
T Consensus        20 ~~~~ki~v~G~~~~GKSsli~~l~~~   45 (188)
T 1zd9_A           20 KEEMELTLVGLQYSGKTTFVNVIASG   45 (188)
T ss_dssp             CEEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             CCccEEEEECCCCCCHHHHHHHHHcC
Confidence            46789999999999999999999753

>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*

Probab=96.64  E-value=0.0012  Score=48.87  Aligned_cols=26  Identities=8%  Similarity=0.045  Sum_probs=23.3

Q ss_pred             CCCeEEEEEcCCCCCchHHHHHHHHH
Q 030464           76 RRGVHWAFIGSPRAKKHVYAEMLSKL  101 (177)
Q Consensus        76 ~~~~~IlIiGpPGSGKSTlA~~LAk~  101 (177)
                      .+.++|+|+|.+|+||||+..+|...
T Consensus         7 ~~~~~i~v~G~~~~GKssli~~l~~~   32 (181)
T 2fn4_A            7 SETHKLVVVGGGGVGKSALTIQFIQS   32 (181)
T ss_dssp             SCEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHhC
Confidence            46789999999999999999999765

>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*

Probab=96.63  E-value=0.0011  Score=58.42  Aligned_cols=35  Identities=9%  Similarity=0.049  Sum_probs=27.5

Q ss_pred             CeEEEEEcCCCCCchHHHHHHHHHh-----CCC--eeeCchh
Q 030464           78 GVHWAFIGSPRAKKHVYAEMLSKLL-----EVP--RISMSSI  112 (177)
Q Consensus        78 ~~~IlIiGpPGSGKSTlA~~LAk~l-----gl~--~Is~~dL  112 (177)
                      ...++|.||||+||||+++.++..+     +..  +++..++
T Consensus       130 ~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~~~~  171 (440)
T 2z4s_A          130 YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKF  171 (440)
T ss_dssp             SCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEHHHH
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHH
Confidence            5568999999999999999999876     544  4454444

>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}

Probab=96.63  E-value=0.0011  Score=48.76  Aligned_cols=25  Identities=16%  Similarity=0.224  Sum_probs=22.2

Q ss_pred             CCeEEEEEcCCCCCchHHHHHHHHH
Q 030464           77 RGVHWAFIGSPRAKKHVYAEMLSKL  101 (177)
Q Consensus        77 ~~~~IlIiGpPGSGKSTlA~~LAk~  101 (177)
                      +.++|+|+|.||+|||++..+|...
T Consensus         3 ~~~ki~i~G~~~vGKSsl~~~l~~~   27 (175)
T 2nzj_A            3 ALYRVVLLGDPGVGKTSLASLFAGK   27 (175)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHCC
T ss_pred             eEEEEEEECCCCccHHHHHHHHhcC
Confidence            5689999999999999999999753

>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*

Probab=96.63  E-value=0.0012  Score=49.26  Aligned_cols=24  Identities=25%  Similarity=0.390  Sum_probs=21.6

Q ss_pred             CCeEEEEEcCCCCCchHHHHHHHH
Q 030464           77 RGVHWAFIGSPRAKKHVYAEMLSK  100 (177)
Q Consensus        77 ~~~~IlIiGpPGSGKSTlA~~LAk  100 (177)
                      +..+|+|+|+||+||||+..+|..
T Consensus         2 ~~~~v~lvG~~gvGKStL~~~l~~   25 (165)
T 2wji_A            2 KSYEIALIGNPNVGKSTIFNALTG   25 (165)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHC
T ss_pred             CccEEEEECCCCCCHHHHHHHHhC
Confidence            357899999999999999999976

>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}

Probab=96.63  E-value=0.0013  Score=47.80  Aligned_cols=23  Identities=22%  Similarity=0.225  Sum_probs=21.1

Q ss_pred             eEEEEEcCCCCCchHHHHHHHHH
Q 030464           79 VHWAFIGSPRAKKHVYAEMLSKL  101 (177)
Q Consensus        79 ~~IlIiGpPGSGKSTlA~~LAk~  101 (177)
                      ++|+|+|++|+||||+..++...
T Consensus         2 ~ki~v~G~~~~GKSsli~~l~~~   24 (161)
T 2dyk_A            2 HKVVIVGRPNVGKSSLFNRLLKK   24 (161)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHC
T ss_pred             CEEEEECCCCCCHHHHHHHHhCC
Confidence            68999999999999999999864

>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*

Probab=96.63  E-value=0.0014  Score=48.58  Aligned_cols=25  Identities=12%  Similarity=0.142  Sum_probs=22.8

Q ss_pred             CCCeEEEEEcCCCCCchHHHHHHHH
Q 030464           76 RRGVHWAFIGSPRAKKHVYAEMLSK  100 (177)
Q Consensus        76 ~~~~~IlIiGpPGSGKSTlA~~LAk  100 (177)
                      .+..+|+|+|.+|+||||+..+|..
T Consensus         6 ~~~~~i~v~G~~~~GKssl~~~l~~   30 (178)
T 2lkc_A            6 ERPPVVTIMGHVDHGKTTLLDAIRH   30 (178)
T ss_dssp             CCCCEEEEESCTTTTHHHHHHHHHT
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhC
Confidence            5778999999999999999999975

>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*

Probab=96.62  E-value=0.0012  Score=55.04  Aligned_cols=27  Identities=26%  Similarity=0.306  Sum_probs=23.9

Q ss_pred             CeEEEEEcCCCCCchHHHHHHHHHhCC
Q 030464           78 GVHWAFIGSPRAKKHVYAEMLSKLLEV  104 (177)
Q Consensus        78 ~~~IlIiGpPGSGKSTlA~~LAk~lgl  104 (177)
                      +..++|.||||+|||++++.+++.++.
T Consensus        38 ~~~~ll~G~~G~GKT~la~~la~~l~~   64 (373)
T 1jr3_A           38 HHAYLFSGTRGVGKTSIARLLAKGLNC   64 (373)
T ss_dssp             CSEEEEESCTTSSHHHHHHHHHHHHSC
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence            346899999999999999999998865

>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11

Probab=96.62  E-value=0.0011  Score=52.06  Aligned_cols=27  Identities=19%  Similarity=0.133  Sum_probs=23.9

Q ss_pred             cCCCeEEEEEcCCCCCchHHHHHHHHH
Q 030464           75 RRRGVHWAFIGSPRAKKHVYAEMLSKL  101 (177)
Q Consensus        75 ~~~~~~IlIiGpPGSGKSTlA~~LAk~  101 (177)
                      ..++-.+.|+|+||+||||++..|+..
T Consensus        21 i~~G~~~~i~G~~GsGKTtl~~~l~~~   47 (243)
T 1n0w_A           21 IETGSITEMFGEFRTGKTQICHTLAVT   47 (243)
T ss_dssp             EETTSEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CcCCeEEEEECCCCCcHHHHHHHHHHH
Confidence            457778999999999999999999884

>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=96.61  E-value=0.001  Score=55.87  Aligned_cols=24  Identities=25%  Similarity=0.351  Sum_probs=21.8

Q ss_pred             EEEEEcCCCCCchHHHHHHHHHhC
Q 030464           80 HWAFIGSPRAKKHVYAEMLSKLLE  103 (177)
Q Consensus        80 ~IlIiGpPGSGKSTlA~~LAk~lg  103 (177)
                      .++|.||||+||||+++.+++.+.
T Consensus        48 ~~ll~Gp~G~GKTtla~~la~~l~   71 (340)
T 1sxj_C           48 HLLFYGPPGTGKTSTIVALAREIY   71 (340)
T ss_dssp             CEEEECSSSSSHHHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHHHc
Confidence            389999999999999999999863

>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}

Probab=96.61  E-value=0.0012  Score=50.29  Aligned_cols=26  Identities=19%  Similarity=0.134  Sum_probs=22.7

Q ss_pred             CCCeEEEEEcCCCCCchHHHHHHHHH
Q 030464           76 RRGVHWAFIGSPRAKKHVYAEMLSKL  101 (177)
Q Consensus        76 ~~~~~IlIiGpPGSGKSTlA~~LAk~  101 (177)
                      .+.++|+|+|.+|+|||++..++...
T Consensus        19 ~~~~ki~vvG~~~vGKTsLi~~l~~~   44 (187)
T 3c5c_A           19 PLEVNLAILGRRGAGKSALTVKFLTK   44 (187)
T ss_dssp             -CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred             CceEEEEEECCCCCcHHHHHHHHHhC
Confidence            56789999999999999999998764

>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=96.61  E-value=0.00096  Score=55.64  Aligned_cols=23  Identities=17%  Similarity=0.199  Sum_probs=21.1

Q ss_pred             EEEEEcCCCCCchHHHHHHHHHh
Q 030464           80 HWAFIGSPRAKKHVYAEMLSKLL  102 (177)
Q Consensus        80 ~IlIiGpPGSGKSTlA~~LAk~l  102 (177)
                      .++|.||||+||||+++.|++.+
T Consensus        38 ~~ll~Gp~G~GKTtl~~~la~~l   60 (354)
T 1sxj_E           38 HLLLYGPNGTGKKTRCMALLESI   60 (354)
T ss_dssp             CEEEECSTTSSHHHHHHTHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHHH
Confidence            39999999999999999999964

>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=96.61  E-value=0.0012  Score=48.22  Aligned_cols=25  Identities=8%  Similarity=0.117  Sum_probs=22.1

Q ss_pred             CCeEEEEEcCCCCCchHHHHHHHHH
Q 030464           77 RGVHWAFIGSPRAKKHVYAEMLSKL  101 (177)
Q Consensus        77 ~~~~IlIiGpPGSGKSTlA~~LAk~  101 (177)
                      +.++|+|+|++|+||||+..+|...
T Consensus         2 ~~~~i~v~G~~~~GKssli~~l~~~   26 (170)
T 1ek0_A            2 TSIKLVLLGEAAVGKSSIVLRFVSN   26 (170)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             ceEEEEEECCCCCCHHHHHHHHhcC
Confidence            4578999999999999999998754

>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*

Probab=96.61  E-value=0.0011  Score=48.46  Aligned_cols=26  Identities=12%  Similarity=0.064  Sum_probs=23.2

Q ss_pred             CCCeEEEEEcCCCCCchHHHHHHHHH
Q 030464           76 RRGVHWAFIGSPRAKKHVYAEMLSKL  101 (177)
Q Consensus        76 ~~~~~IlIiGpPGSGKSTlA~~LAk~  101 (177)
                      .+.++|+|+|++|+||||+..+|...
T Consensus         4 ~~~~~i~v~G~~~~GKSsli~~l~~~   29 (170)
T 1z0j_A            4 LRELKVCLLGDTGVGKSSIMWRFVED   29 (170)
T ss_dssp             EEEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred             CcceEEEEECcCCCCHHHHHHHHHcC
Confidence            45689999999999999999999765

>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*

Probab=96.60  E-value=0.001  Score=48.55  Aligned_cols=26  Identities=12%  Similarity=0.032  Sum_probs=23.0

Q ss_pred             CCCeEEEEEcCCCCCchHHHHHHHHH
Q 030464           76 RRGVHWAFIGSPRAKKHVYAEMLSKL  101 (177)
Q Consensus        76 ~~~~~IlIiGpPGSGKSTlA~~LAk~  101 (177)
                      .+.++|+|+|.+|+||||+..+|...
T Consensus         4 ~~~~~i~v~G~~~~GKssli~~l~~~   29 (170)
T 1r2q_A            4 ICQFKLVLLGESAVGKSSLVLRFVKG   29 (170)
T ss_dssp             EEEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             CceEEEEEECCCCCCHHHHHHHHHcC
Confidence            46789999999999999999999763

>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}

Probab=96.60  E-value=0.00099  Score=52.31  Aligned_cols=47  Identities=9%  Similarity=-0.010  Sum_probs=32.1

Q ss_pred             ccccCcc-CcccCCCeEEEEEcCCCCCchHHHHHHHHHh-----CCCeeeCch
Q 030464           65 VTLPDTE-GRERRRGVHWAFIGSPRAKKHVYAEMLSKLL-----EVPRISMSS  111 (177)
Q Consensus        65 ~~~~~~~-~~~~~~~~~IlIiGpPGSGKSTlA~~LAk~l-----gl~~Is~~d  111 (177)
                      .+.++.- +....++-.++|.|+||+||||+|..++...     ++.+++...
T Consensus         9 ~~~LD~~l~gGl~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~e~   61 (247)
T 2dr3_A            9 IPGVDEILHGGIPERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVALEE   61 (247)
T ss_dssp             CTTHHHHTTTSEETTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEESSS
T ss_pred             chhHHHHcCCCCCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccC
Confidence            3344443 2334567789999999999999998886542     455666653

>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*

Probab=96.59  E-value=0.00097  Score=50.03  Aligned_cols=28  Identities=7%  Similarity=0.070  Sum_probs=24.0

Q ss_pred             CCCeEEEEEcCCCCCchHHHHHHHHHhC
Q 030464           76 RRGVHWAFIGSPRAKKHVYAEMLSKLLE  103 (177)
Q Consensus        76 ~~~~~IlIiGpPGSGKSTlA~~LAk~lg  103 (177)
                      .+.++|+|+|.+|+|||++.+.+...+.
T Consensus        12 ~~~~ki~vvG~~~~GKssL~~~l~~~~~   39 (198)
T 3t1o_A           12 EINFKIVYYGPGLSGKTTNLKWIYSKVP   39 (198)
T ss_dssp             EEEEEEEEECSTTSSHHHHHHHHHHTSC
T ss_pred             ccccEEEEECCCCCCHHHHHHHHHhhcc
Confidence            4668999999999999999988876553

>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*

Probab=96.59  E-value=0.0048  Score=52.01  Aligned_cols=26  Identities=23%  Similarity=0.285  Sum_probs=21.9

Q ss_pred             CCeEEEE--EcCCCCCchHHHHHHHHHh
Q 030464           77 RGVHWAF--IGSPRAKKHVYAEMLSKLL  102 (177)
Q Consensus        77 ~~~~IlI--iGpPGSGKSTlA~~LAk~l  102 (177)
                      .+..++|  .|+||+|||++++.+++.+
T Consensus        49 ~~~~~li~i~G~~G~GKT~L~~~~~~~~   76 (412)
T 1w5s_A           49 SDVNMIYGSIGRVGIGKTTLAKFTVKRV   76 (412)
T ss_dssp             CCEEEEEECTTCCSSSHHHHHHHHHHHH
T ss_pred             CCCEEEEeCcCcCCCCHHHHHHHHHHHH
Confidence            3456777  8999999999999998865

>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*

Probab=96.59  E-value=0.0013  Score=48.98  Aligned_cols=26  Identities=8%  Similarity=-0.009  Sum_probs=23.2

Q ss_pred             CCCeEEEEEcCCCCCchHHHHHHHHH
Q 030464           76 RRGVHWAFIGSPRAKKHVYAEMLSKL  101 (177)
Q Consensus        76 ~~~~~IlIiGpPGSGKSTlA~~LAk~  101 (177)
                      .+.++|+|+|.+|+||||+..+|...
T Consensus         9 ~~~~ki~v~G~~~~GKSsli~~l~~~   34 (195)
T 3bc1_A            9 DYLIKFLALGDSGVGKTSVLYQYTDG   34 (195)
T ss_dssp             SEEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             ceeEEEEEECCCCCCHHHHHHHHhcC
Confidence            46789999999999999999999863

>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*

Probab=96.58  E-value=0.0012  Score=49.73  Aligned_cols=26  Identities=12%  Similarity=0.056  Sum_probs=23.3

Q ss_pred             CCCeEEEEEcCCCCCchHHHHHHHHH
Q 030464           76 RRGVHWAFIGSPRAKKHVYAEMLSKL  101 (177)
Q Consensus        76 ~~~~~IlIiGpPGSGKSTlA~~LAk~  101 (177)
                      .+.++|+|+|.+|+||||+..+|...
T Consensus        19 ~~~~ki~vvG~~~~GKSsli~~l~~~   44 (190)
T 3con_A           19 MTEYKLVVVGAGGVGKSALTIQLIQN   44 (190)
T ss_dssp             CEEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             cceeEEEEECcCCCCHHHHHHHHHcC
Confidence            46689999999999999999999865

>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*

Probab=96.58  E-value=0.0013  Score=48.25  Aligned_cols=26  Identities=8%  Similarity=-0.013  Sum_probs=23.0

Q ss_pred             CCCeEEEEEcCCCCCchHHHHHHHHH
Q 030464           76 RRGVHWAFIGSPRAKKHVYAEMLSKL  101 (177)
Q Consensus        76 ~~~~~IlIiGpPGSGKSTlA~~LAk~  101 (177)
                      .+.++|+|+|.+|+||||+..++...
T Consensus         4 ~~~~~i~v~G~~~~GKssli~~l~~~   29 (170)
T 1z08_A            4 AYSFKVVLLGEGCVGKTSLVLRYCEN   29 (170)
T ss_dssp             CEEEEEEEECCTTSCHHHHHHHHHHC
T ss_pred             CcceEEEEECcCCCCHHHHHHHHHcC
Confidence            45689999999999999999999764

>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*

Probab=96.56  E-value=0.0014  Score=48.50  Aligned_cols=26  Identities=8%  Similarity=0.035  Sum_probs=22.5

Q ss_pred             CCCeEEEEEcCCCCCchHHHHHHHHH
Q 030464           76 RRGVHWAFIGSPRAKKHVYAEMLSKL  101 (177)
Q Consensus        76 ~~~~~IlIiGpPGSGKSTlA~~LAk~  101 (177)
                      .+.++|+|+|++|+||||+..+|...
T Consensus         6 ~~~~~i~v~G~~~~GKSsli~~l~~~   31 (182)
T 1ky3_A            6 KNILKVIILGDSGVGKTSLMHRYVND   31 (182)
T ss_dssp             -CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred             CceEEEEEECCCCCCHHHHHHHHHhC
Confidence            45689999999999999999998764

>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A

Probab=96.56  E-value=0.0012  Score=53.62  Aligned_cols=23  Identities=35%  Similarity=0.440  Sum_probs=21.4

Q ss_pred             EEEEEcCCCCCchHHHHHHHHHh
Q 030464           80 HWAFIGSPRAKKHVYAEMLSKLL  102 (177)
Q Consensus        80 ~IlIiGpPGSGKSTlA~~LAk~l  102 (177)
                      .++|.||||+|||++++.+++.+
T Consensus        40 ~~ll~G~~G~GKt~la~~l~~~l   62 (319)
T 2chq_A           40 HLLFSGPPGTGKTATAIALARDL   62 (319)
T ss_dssp             CEEEESSSSSSHHHHHHHHHHHH
T ss_pred             eEEEECcCCcCHHHHHHHHHHHh
Confidence            49999999999999999999985

>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*

Probab=96.55  E-value=0.0011  Score=49.94  Aligned_cols=28  Identities=14%  Similarity=0.023  Sum_probs=22.2

Q ss_pred             ccCCCeEEEEEcCCCCCchHHHHHHHHH
Q 030464           74 ERRRGVHWAFIGSPRAKKHVYAEMLSKL  101 (177)
Q Consensus        74 ~~~~~~~IlIiGpPGSGKSTlA~~LAk~  101 (177)
                      ...+..+|+|+|.+|+|||++..+|...
T Consensus        17 ~~~~~~~i~v~G~~~~GKSsli~~l~~~   44 (181)
T 2h17_A           17 RGSQEHKVIIVGLDNAGKTTILYQFSMN   44 (181)
T ss_dssp             ----CEEEEEEEETTSSHHHHHHHHHTT
T ss_pred             CCCceeEEEEECCCCCCHHHHHHHHhcC
Confidence            3457799999999999999999999753

>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}

Probab=96.55  E-value=0.0016  Score=60.76  Aligned_cols=40  Identities=28%  Similarity=0.483  Sum_probs=30.8

Q ss_pred             CCCe-EEEEEcCCCCCchHHHHHHHHHh---C--CCeeeCchhhhh
Q 030464           76 RRGV-HWAFIGSPRAKKHVYAEMLSKLL---E--VPRISMSSIVRQ  115 (177)
Q Consensus        76 ~~~~-~IlIiGpPGSGKSTlA~~LAk~l---g--l~~Is~~dLlr~  115 (177)
                      .++. .++|.||||+|||++|+.|++.+   +  +..+++.++...
T Consensus       518 ~~p~~~~Ll~Gp~GtGKT~lA~ala~~l~~~~~~~i~i~~s~~~~~  563 (758)
T 3pxi_A          518 KRPIGSFIFLGPTGVGKTELARALAESIFGDEESMIRIDMSEYMEK  563 (758)
T ss_dssp             TSCSEEEEEESCTTSSHHHHHHHHHHHHHSCTTCEEEEEGGGGCSS
T ss_pred             CCCceEEEEECCCCCCHHHHHHHHHHHhcCCCcceEEEechhcccc
Confidence            3444 69999999999999999999986   3  446666666544

>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*

Probab=96.55  E-value=0.0014  Score=48.63  Aligned_cols=26  Identities=12%  Similarity=-0.096  Sum_probs=22.7

Q ss_pred             CCCeEEEEEcCCCCCchHHHHHHHHH
Q 030464           76 RRGVHWAFIGSPRAKKHVYAEMLSKL  101 (177)
Q Consensus        76 ~~~~~IlIiGpPGSGKSTlA~~LAk~  101 (177)
                      .+.++|+|+|.+|+||||+..+|...
T Consensus        16 ~~~~ki~v~G~~~~GKSsli~~l~~~   41 (187)
T 2a9k_A           16 LALHKVIMVGSGGVGKSALTLQFMYD   41 (187)
T ss_dssp             -CEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             CCceEEEEECCCCCCHHHHHHHHhhC
Confidence            46689999999999999999999864

>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}

Probab=96.55  E-value=0.0014  Score=52.25  Aligned_cols=25  Identities=12%  Similarity=0.058  Sum_probs=20.7

Q ss_pred             CCeEEEEEcCCCCCchHHHHHHHHH
Q 030464           77 RGVHWAFIGSPRAKKHVYAEMLSKL  101 (177)
Q Consensus        77 ~~~~IlIiGpPGSGKSTlA~~LAk~  101 (177)
                      -++.++|+|+||||||++|..+...
T Consensus         4 ~~mi~l~tG~pGsGKT~~a~~~~~~   28 (199)
T 2r2a_A            4 MAEICLITGTPGSGKTLKMVSMMAN   28 (199)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             ceeEEEEEeCCCCCHHHHHHHHHHH
Confidence            4568899999999999999886433

>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*

Probab=96.55  E-value=0.0014  Score=50.24  Aligned_cols=25  Identities=12%  Similarity=0.066  Sum_probs=22.3

Q ss_pred             CCeEEEEEcCCCCCchHHHHHHHHH
Q 030464           77 RGVHWAFIGSPRAKKHVYAEMLSKL  101 (177)
Q Consensus        77 ~~~~IlIiGpPGSGKSTlA~~LAk~  101 (177)
                      ..++|+|+|++|+||||+.+.|+..
T Consensus         4 ~~~kv~lvG~~g~GKSTLl~~l~~~   28 (199)
T 2f9l_A            4 YLFKVVLIGDSGVGKSNLLSRFTRN   28 (199)
T ss_dssp             EEEEEEEESSTTSSHHHHHHHHHHS
T ss_pred             ceEEEEEECcCCCCHHHHHHHHhcC
Confidence            3578999999999999999999874

>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*

Probab=96.55  E-value=0.0015  Score=51.02  Aligned_cols=26  Identities=12%  Similarity=0.033  Sum_probs=21.5

Q ss_pred             CCeEEEEEcCCCCCchHHHHHHHHHh
Q 030464           77 RGVHWAFIGSPRAKKHVYAEMLSKLL  102 (177)
Q Consensus        77 ~~~~IlIiGpPGSGKSTlA~~LAk~l  102 (177)
                      ++..++++|+||+||||++.+++..+
T Consensus         2 ~g~i~vi~G~~gsGKTT~ll~~~~~~   27 (184)
T 2orw_A            2 SGKLTVITGPMYSGKTTELLSFVEIY   27 (184)
T ss_dssp             CCCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             ccEEEEEECCCCCCHHHHHHHHHHHH
Confidence            35678999999999999997777654

>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*

Probab=96.54  E-value=0.0014  Score=48.69  Aligned_cols=26  Identities=15%  Similarity=0.081  Sum_probs=23.1

Q ss_pred             CCCeEEEEEcCCCCCchHHHHHHHHH
Q 030464           76 RRGVHWAFIGSPRAKKHVYAEMLSKL  101 (177)
Q Consensus        76 ~~~~~IlIiGpPGSGKSTlA~~LAk~  101 (177)
                      .+.++|+|+|.+|+||||+..+|...
T Consensus        10 ~~~~ki~v~G~~~~GKSsli~~l~~~   35 (181)
T 2efe_B           10 SINAKLVLLGDVGAGKSSLVLRFVKD   35 (181)
T ss_dssp             CEEEEEEEECCTTSCHHHHHHHHHHC
T ss_pred             ccceEEEEECcCCCCHHHHHHHHHcC
Confidence            56689999999999999999999764

>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=96.54  E-value=0.0015  Score=48.38  Aligned_cols=26  Identities=8%  Similarity=0.035  Sum_probs=23.2

Q ss_pred             CCCeEEEEEcCCCCCchHHHHHHHHH
Q 030464           76 RRGVHWAFIGSPRAKKHVYAEMLSKL  101 (177)
Q Consensus        76 ~~~~~IlIiGpPGSGKSTlA~~LAk~  101 (177)
                      .+.++|+|+|.+|+||||+..+|...
T Consensus         8 ~~~~~i~v~G~~~~GKssli~~l~~~   33 (180)
T 2g6b_A            8 DVAFKVMLVGDSGVGKTCLLVRFKDG   33 (180)
T ss_dssp             SEEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             CcceEEEEECcCCCCHHHHHHHHHhC
Confidence            56789999999999999999999764

>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=96.53  E-value=0.0011  Score=49.50  Aligned_cols=25  Identities=16%  Similarity=0.111  Sum_probs=22.7

Q ss_pred             CCCeEEEEEcCCCCCchHHHHHHHH
Q 030464           76 RRGVHWAFIGSPRAKKHVYAEMLSK  100 (177)
Q Consensus        76 ~~~~~IlIiGpPGSGKSTlA~~LAk  100 (177)
                      .+..+|+|+|++|+||||+..++..
T Consensus        16 ~~~~~i~v~G~~~~GKssli~~l~~   40 (183)
T 1moz_A           16 NKELRILILGLDGAGKTTILYRLQI   40 (183)
T ss_dssp             SSCEEEEEEEETTSSHHHHHHHTCC
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhc
Confidence            5789999999999999999999863

>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8

Probab=96.53  E-value=0.0013  Score=48.01  Aligned_cols=24  Identities=17%  Similarity=0.095  Sum_probs=21.7

Q ss_pred             CCeEEEEEcCCCCCchHHHHHHHH
Q 030464           77 RGVHWAFIGSPRAKKHVYAEMLSK  100 (177)
Q Consensus        77 ~~~~IlIiGpPGSGKSTlA~~LAk  100 (177)
                      +.++|+|+|.+|+||||+..+|..
T Consensus         2 ~~~~i~v~G~~~~GKssli~~l~~   25 (172)
T 2erx_A            2 NDYRVAVFGAGGVGKSSLVLRFVK   25 (172)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHT
T ss_pred             CceEEEEECCCCCCHHHHHHHHHc
Confidence            457899999999999999999976

>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*

Probab=96.52  E-value=0.0017  Score=49.12  Aligned_cols=28  Identities=18%  Similarity=0.181  Sum_probs=24.4

Q ss_pred             ccCCCeEEEEEcCCCCCchHHHHHHHHH
Q 030464           74 ERRRGVHWAFIGSPRAKKHVYAEMLSKL  101 (177)
Q Consensus        74 ~~~~~~~IlIiGpPGSGKSTlA~~LAk~  101 (177)
                      .|.+..+|+|+|++|+||||+..++...
T Consensus        12 ~~~~~~ki~ivG~~~vGKSsL~~~l~~~   39 (181)
T 1fzq_A           12 APDQEVRILLLGLDNAGKTTLLKQLASE   39 (181)
T ss_dssp             CCSSCEEEEEEESTTSSHHHHHHHHCCS
T ss_pred             cCCCceEEEEECCCCCCHHHHHHHHhcC
Confidence            3467899999999999999999999754

>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A

Probab=96.52  E-value=0.0015  Score=47.83  Aligned_cols=25  Identities=12%  Similarity=0.034  Sum_probs=21.9

Q ss_pred             CCeEEEEEcCCCCCchHHHHHHHHH
Q 030464           77 RGVHWAFIGSPRAKKHVYAEMLSKL  101 (177)
Q Consensus        77 ~~~~IlIiGpPGSGKSTlA~~LAk~  101 (177)
                      ..++|+|+|++|+|||++..+|...
T Consensus         2 ~~~~i~v~G~~~~GKssli~~l~~~   26 (170)
T 1g16_A            2 SIMKILLIGDSGVGKSCLLVRFVED   26 (170)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHHC
T ss_pred             CceEEEEECcCCCCHHHHHHHHHhC
Confidence            3578999999999999999999753

>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}

Probab=96.51  E-value=0.0016  Score=49.06  Aligned_cols=26  Identities=12%  Similarity=0.012  Sum_probs=23.2

Q ss_pred             CCCeEEEEEcCCCCCchHHHHHHHHH
Q 030464           76 RRGVHWAFIGSPRAKKHVYAEMLSKL  101 (177)
Q Consensus        76 ~~~~~IlIiGpPGSGKSTlA~~LAk~  101 (177)
                      ...++|+|+|.+|+||||+..+|...
T Consensus        14 ~~~~ki~v~G~~~~GKSsli~~l~~~   39 (196)
T 3tkl_A           14 DYLFKLLLIGDSGVGKSCLLLRFADD   39 (196)
T ss_dssp             SEEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             ccceEEEEECcCCCCHHHHHHHHHcC
Confidence            46689999999999999999999764

>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*

Probab=96.51  E-value=0.0017  Score=48.43  Aligned_cols=26  Identities=8%  Similarity=0.003  Sum_probs=23.3

Q ss_pred             CCCeEEEEEcCCCCCchHHHHHHHHH
Q 030464           76 RRGVHWAFIGSPRAKKHVYAEMLSKL  101 (177)
Q Consensus        76 ~~~~~IlIiGpPGSGKSTlA~~LAk~  101 (177)
                      .+.++|+|+|.+|+||||+..+|...
T Consensus        16 ~~~~ki~v~G~~~~GKSsl~~~l~~~   41 (183)
T 3kkq_A           16 LPTYKLVVVGDGGVGKSALTIQFFQK   41 (183)
T ss_dssp             CCEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHhC
Confidence            56789999999999999999999864

>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}

Probab=96.50  E-value=0.0017  Score=49.02  Aligned_cols=26  Identities=12%  Similarity=0.063  Sum_probs=23.3

Q ss_pred             CCCeEEEEEcCCCCCchHHHHHHHHH
Q 030464           76 RRGVHWAFIGSPRAKKHVYAEMLSKL  101 (177)
Q Consensus        76 ~~~~~IlIiGpPGSGKSTlA~~LAk~  101 (177)
                      .+.++|+|+|++|+||||+..+|...
T Consensus        46 ~~~~~i~vvG~~g~GKSsll~~l~~~   71 (193)
T 2ged_A           46 SYQPSIIIAGPQNSGKTSLLTLLTTD   71 (193)
T ss_dssp             CCCCEEEEECCTTSSHHHHHHHHHHS
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhcC
Confidence            46789999999999999999999875

>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}

Probab=96.50  E-value=0.0014  Score=48.44  Aligned_cols=25  Identities=12%  Similarity=0.070  Sum_probs=22.3

Q ss_pred             CCCeEEEEEcCCCCCchHHHHHHHH
Q 030464           76 RRGVHWAFIGSPRAKKHVYAEMLSK  100 (177)
Q Consensus        76 ~~~~~IlIiGpPGSGKSTlA~~LAk  100 (177)
                      .+.++|+|+|.+|+||||+..+|..
T Consensus         7 ~~~~~i~v~G~~~~GKssl~~~l~~   31 (181)
T 3tw8_B            7 DHLFKLLIIGDSGVGKSSLLLRFAD   31 (181)
T ss_dssp             CEEEEEEEECCTTSCHHHHHHHHCS
T ss_pred             CcceEEEEECCCCCCHHHHHHHHhc
Confidence            4668999999999999999999864

>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10

Probab=96.49  E-value=0.0018  Score=54.86  Aligned_cols=27  Identities=15%  Similarity=0.154  Sum_probs=23.6

Q ss_pred             CCCeEEEEEcCCCCCchHHHHHHHHHh
Q 030464           76 RRGVHWAFIGSPRAKKHVYAEMLSKLL  102 (177)
Q Consensus        76 ~~~~~IlIiGpPGSGKSTlA~~LAk~l  102 (177)
                      .++..|+|+|++||||||++..||..+
T Consensus       102 ~~~~vi~ivG~~GsGKTTl~~~LA~~l  128 (306)
T 1vma_A          102 EPPFVIMVVGVNGTGKTTSCGKLAKMF  128 (306)
T ss_dssp             SSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCCeEEEEEcCCCChHHHHHHHHHHHH
Confidence            456788999999999999999998765

>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}

Probab=96.49  E-value=0.0014  Score=49.47  Aligned_cols=28  Identities=7%  Similarity=0.116  Sum_probs=22.2

Q ss_pred             cccCCCeEEEEEcCCCCCchHHHHHHHH
Q 030464           73 RERRRGVHWAFIGSPRAKKHVYAEMLSK  100 (177)
Q Consensus        73 ~~~~~~~~IlIiGpPGSGKSTlA~~LAk  100 (177)
                      +.+....+|+|+|.+|+|||++..+|..
T Consensus        12 ~~~~~~~ki~v~G~~~~GKSsl~~~l~~   39 (199)
T 4bas_A           12 GQSKTKLQVVMCGLDNSGKTTIINQVKP   39 (199)
T ss_dssp             ----CEEEEEEECCTTSCHHHHHHHHSC
T ss_pred             cCCCCCcEEEEECCCCCCHHHHHHHHhc
Confidence            3446778999999999999999999865

>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}

Probab=96.48  E-value=0.0015  Score=50.10  Aligned_cols=26  Identities=15%  Similarity=0.011  Sum_probs=23.1

Q ss_pred             CCCeEEEEEcCCCCCchHHHHHHHHH
Q 030464           76 RRGVHWAFIGSPRAKKHVYAEMLSKL  101 (177)
Q Consensus        76 ~~~~~IlIiGpPGSGKSTlA~~LAk~  101 (177)
                      .+.++|+|+|.+|+||||+..+|...
T Consensus        22 ~~~~ki~vvG~~~~GKSsli~~l~~~   47 (201)
T 3oes_A           22 VRYRKVVILGYRCVGKTSLAHQFVEG   47 (201)
T ss_dssp             -CEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred             CCcEEEEEECCCCcCHHHHHHHHHhC
Confidence            57789999999999999999999864

>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}

Probab=96.48  E-value=0.0019  Score=50.10  Aligned_cols=27  Identities=15%  Similarity=0.119  Sum_probs=23.8

Q ss_pred             CCCeEEEEEcCCCCCchHHHHHHHHHh
Q 030464           76 RRGVHWAFIGSPRAKKHVYAEMLSKLL  102 (177)
Q Consensus        76 ~~~~~IlIiGpPGSGKSTlA~~LAk~l  102 (177)
                      .+..+|+|+|.+|+||||++.+|+..+
T Consensus        28 ~~~~~i~i~G~~g~GKTTl~~~l~~~~   54 (221)
T 2wsm_A           28 SGTVAVNIMGAIGSGKTLLIERTIERI   54 (221)
T ss_dssp             HTCEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred             cCceEEEEEcCCCCCHHHHHHHHHHHh
Confidence            356789999999999999999998875

>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...

Probab=96.48  E-value=0.0017  Score=48.31  Aligned_cols=26  Identities=8%  Similarity=0.094  Sum_probs=22.8

Q ss_pred             CCCeEEEEEcCCCCCchHHHHHHHHH
Q 030464           76 RRGVHWAFIGSPRAKKHVYAEMLSKL  101 (177)
Q Consensus        76 ~~~~~IlIiGpPGSGKSTlA~~LAk~  101 (177)
                      ++.++|+|+|.+|+||||+..++...
T Consensus         3 ~~~~~i~~~G~~~~GKssl~~~l~~~   28 (186)
T 1mh1_A            3 PQAIKCVVVGDGAVGKTCLLISYTTN   28 (186)
T ss_dssp             CEEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             CcEEEEEEECCCCCCHHHHHHHHHcC
Confidence            35689999999999999999999753

>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=96.48  E-value=0.0015  Score=53.14  Aligned_cols=23  Identities=26%  Similarity=0.303  Sum_probs=21.3

Q ss_pred             EEEEEcCCCCCchHHHHHHHHHh
Q 030464           80 HWAFIGSPRAKKHVYAEMLSKLL  102 (177)
Q Consensus        80 ~IlIiGpPGSGKSTlA~~LAk~l  102 (177)
                      .++|.||||+|||++++.+++.+
T Consensus        44 ~~ll~G~~G~GKt~la~~l~~~l   66 (323)
T 1sxj_B           44 HMIISGMPGIGKTTSVHCLAHEL   66 (323)
T ss_dssp             CEEEECSTTSSHHHHHHHHHHHH
T ss_pred             eEEEECcCCCCHHHHHHHHHHHh
Confidence            39999999999999999999985

>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=96.47  E-value=0.0016  Score=50.28  Aligned_cols=27  Identities=15%  Similarity=0.058  Sum_probs=23.5

Q ss_pred             cCCCeEEEEEcCCCCCchHHHHHHHHH
Q 030464           75 RRRGVHWAFIGSPRAKKHVYAEMLSKL  101 (177)
Q Consensus        75 ~~~~~~IlIiGpPGSGKSTlA~~LAk~  101 (177)
                      ..+.++|+|+|.+|+||||+..+|...
T Consensus        22 ~~~~~ki~vvG~~~~GKSsli~~l~~~   48 (207)
T 2fv8_A           22 SMIRKKLVVVGDGACGKTCLLIVFSKD   48 (207)
T ss_dssp             GSEEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred             cccCcEEEEECcCCCCHHHHHHHHhcC
Confidence            356789999999999999999999763

>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*

Probab=96.47  E-value=0.0016  Score=48.60  Aligned_cols=25  Identities=12%  Similarity=0.093  Sum_probs=22.6

Q ss_pred             CCeEEEEEcCCCCCchHHHHHHHHH
Q 030464           77 RGVHWAFIGSPRAKKHVYAEMLSKL  101 (177)
Q Consensus        77 ~~~~IlIiGpPGSGKSTlA~~LAk~  101 (177)
                      +.++|+|+|.+|+||||+..+|...
T Consensus         3 ~~~ki~v~G~~~~GKSsli~~l~~~   27 (189)
T 4dsu_A            3 TEYKLVVVGADGVGKSALTIQLIQN   27 (189)
T ss_dssp             EEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred             cEEEEEEECCCCCCHHHHHHHHHhC
Confidence            5689999999999999999999764

>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=96.46  E-value=0.0018  Score=50.02  Aligned_cols=27  Identities=11%  Similarity=0.035  Sum_probs=23.8

Q ss_pred             CCCeEEEEEcCCCCCchHHHHHHHHHh
Q 030464           76 RRGVHWAFIGSPRAKKHVYAEMLSKLL  102 (177)
Q Consensus        76 ~~~~~IlIiGpPGSGKSTlA~~LAk~l  102 (177)
                      .+.++|+|+|++|+||||+..+|....
T Consensus        10 ~~~~~i~~~G~~g~GKTsl~~~l~~~~   36 (218)
T 1nrj_B           10 SYQPSIIIAGPQNSGKTSLLTLLTTDS   36 (218)
T ss_dssp             CCCCEEEEECSTTSSHHHHHHHHHHSS
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            466899999999999999999998753

>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*

Probab=96.46  E-value=0.0018  Score=47.73  Aligned_cols=26  Identities=12%  Similarity=0.117  Sum_probs=23.3

Q ss_pred             CCCeEEEEEcCCCCCchHHHHHHHHH
Q 030464           76 RRGVHWAFIGSPRAKKHVYAEMLSKL  101 (177)
Q Consensus        76 ~~~~~IlIiGpPGSGKSTlA~~LAk~  101 (177)
                      .+.++|+|+|.+|+||||+..+|...
T Consensus        13 ~~~~~i~v~G~~~~GKSsli~~l~~~   38 (179)
T 1z0f_A           13 SYIFKYIIIGDMGVGKSCLLHQFTEK   38 (179)
T ss_dssp             SEEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             ccceEEEEECCCCCCHHHHHHHHHcC
Confidence            46789999999999999999999764

>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}

Probab=96.45  E-value=0.0014  Score=50.34  Aligned_cols=25  Identities=16%  Similarity=0.129  Sum_probs=22.6

Q ss_pred             CCCeEEEEEcCCCCCchHHHHHHHH
Q 030464           76 RRGVHWAFIGSPRAKKHVYAEMLSK  100 (177)
Q Consensus        76 ~~~~~IlIiGpPGSGKSTlA~~LAk  100 (177)
                      .+.++|+|+|.+|+||||+..+|..
T Consensus        23 ~~~~ki~v~G~~~~GKSsLi~~l~~   47 (200)
T 2o52_A           23 DFLFKFLVIGSAGTGKSCLLHQFIE   47 (200)
T ss_dssp             CEEEEEEEEESTTSSHHHHHHHHHC
T ss_pred             CcceEEEEECcCCCCHHHHHHHHHh
Confidence            5678999999999999999999864

>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11

Probab=96.45  E-value=0.0016  Score=51.27  Aligned_cols=23  Identities=26%  Similarity=0.352  Sum_probs=21.3

Q ss_pred             EEEEEcCCCCCchHHHHHHHHHh
Q 030464           80 HWAFIGSPRAKKHVYAEMLSKLL  102 (177)
Q Consensus        80 ~IlIiGpPGSGKSTlA~~LAk~l  102 (177)
                      ++.|+|++||||||+.+.|+..+
T Consensus         3 ~i~i~G~nG~GKTTll~~l~g~~   25 (189)
T 2i3b_A            3 HVFLTGPPGVGKTTLIHKASEVL   25 (189)
T ss_dssp             CEEEESCCSSCHHHHHHHHHHHH
T ss_pred             EEEEECCCCChHHHHHHHHHhhc
Confidence            58899999999999999999876

>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*

Probab=96.44  E-value=0.0016  Score=53.49  Aligned_cols=38  Identities=11%  Similarity=-0.009  Sum_probs=29.4

Q ss_pred             ccccCccCcccCCCeEEEEEcCCCCCchHHHHHHHHHh
Q 030464           65 VTLPDTEGRERRRGVHWAFIGSPRAKKHVYAEMLSKLL  102 (177)
Q Consensus        65 ~~~~~~~~~~~~~~~~IlIiGpPGSGKSTlA~~LAk~l  102 (177)
                      .+.++.......++-.++|+|+||+||||+++.|+...
T Consensus        22 ~~~Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~   59 (296)
T 1cr0_A           22 CTGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQW   59 (296)
T ss_dssp             CTTHHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             HHHHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHH
Confidence            44455554455677889999999999999999987753

>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*

Probab=96.41  E-value=0.0021  Score=50.02  Aligned_cols=26  Identities=27%  Similarity=0.322  Sum_probs=23.4

Q ss_pred             CCeEEEEEcCCCCCchHHHHHHHHHh
Q 030464           77 RGVHWAFIGSPRAKKHVYAEMLSKLL  102 (177)
Q Consensus        77 ~~~~IlIiGpPGSGKSTlA~~LAk~l  102 (177)
                      +..+|+|+|.+|+||||+..+|+...
T Consensus        37 ~~~~i~ivG~~gvGKTtl~~~l~~~~   62 (226)
T 2hf9_A           37 GVVAFDFMGAIGSGKTLLIEKLIDNL   62 (226)
T ss_dssp             TCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHh
Confidence            56789999999999999999998874

>1p6x_A Thymidine kinase; P-loop, LID, transferase; HET: THM; 2.00A {Equid herpesvirus 4} SCOP: c.37.1.1 PDB: 1p72_A* 1p73_A* 1p75_A*

Probab=96.40  E-value=0.0013  Score=56.79  Aligned_cols=32  Identities=9%  Similarity=-0.084  Sum_probs=27.7

Q ss_pred             cccCCCeEEEEEcCCCCCchHHHHHHHHHhCC
Q 030464           73 RERRRGVHWAFIGSPRAKKHVYAEMLSKLLEV  104 (177)
Q Consensus        73 ~~~~~~~~IlIiGpPGSGKSTlA~~LAk~lgl  104 (177)
                      +...+++.|+|-|+-||||||+++.|++.++-
T Consensus         2 ~~~~~~~fI~~EG~dGaGKTT~~~~La~~L~~   33 (334)
T 1p6x_A            2 SHMVTIVRIYLDGVYGIGKSTTGRVMASAASG   33 (334)
T ss_dssp             CCEEEEEEEEEECSTTSSHHHHHHHHHSGGGC
T ss_pred             CCCCCCeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence            44567788999999999999999999998864

>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C

Probab=96.39  E-value=0.0021  Score=47.67  Aligned_cols=26  Identities=12%  Similarity=0.042  Sum_probs=22.6

Q ss_pred             CCCeEEEEEcCCCCCchHHHHHHHHH
Q 030464           76 RRGVHWAFIGSPRAKKHVYAEMLSKL  101 (177)
Q Consensus        76 ~~~~~IlIiGpPGSGKSTlA~~LAk~  101 (177)
                      .+.++|+|+|.+|+||||+..++...
T Consensus         6 ~~~~ki~v~G~~~~GKssl~~~~~~~   31 (182)
T 3bwd_D            6 SRFIKCVTVGDGAVGKTCLLISYTSN   31 (182)
T ss_dssp             -CCCEEEEECSTTSSHHHHHHHHHHS
T ss_pred             CceEEEEEECCCCCCHHHHHHHHhcC
Confidence            46789999999999999999999754

>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A

Probab=96.39  E-value=0.0019  Score=48.67  Aligned_cols=25  Identities=24%  Similarity=0.341  Sum_probs=21.9

Q ss_pred             CCeEEEEEcCCCCCchHHHHHHHHH
Q 030464           77 RGVHWAFIGSPRAKKHVYAEMLSKL  101 (177)
Q Consensus        77 ~~~~IlIiGpPGSGKSTlA~~LAk~  101 (177)
                      ++.+|+|+|.||+||||+..+|...
T Consensus         3 ~~~ki~ivG~~g~GKStLl~~l~~~   27 (172)
T 2gj8_A            3 HGMKVVIAGRPNAGKSSLLNALAGR   27 (172)
T ss_dssp             -CEEEEEEESTTSSHHHHHHHHHTS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCC
Confidence            4678999999999999999999864

>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*

Probab=96.39  E-value=0.002  Score=47.24  Aligned_cols=22  Identities=14%  Similarity=0.199  Sum_probs=20.1

Q ss_pred             eEEEEEcCCCCCchHHHHHHHH
Q 030464           79 VHWAFIGSPRAKKHVYAEMLSK  100 (177)
Q Consensus        79 ~~IlIiGpPGSGKSTlA~~LAk  100 (177)
                      ++|+|+|.||+||||+..++..
T Consensus         3 ~ki~ivG~~~~GKSsli~~l~~   24 (169)
T 3q85_A            3 FKVMLVGESGVGKSTLAGTFGG   24 (169)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHC
T ss_pred             EEEEEECCCCCCHHHHHHHHHh
Confidence            6899999999999999999863

>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=96.38  E-value=0.0022  Score=48.79  Aligned_cols=26  Identities=15%  Similarity=0.109  Sum_probs=22.9

Q ss_pred             CCCeEEEEEcCCCCCchHHHHHHHHH
Q 030464           76 RRGVHWAFIGSPRAKKHVYAEMLSKL  101 (177)
Q Consensus        76 ~~~~~IlIiGpPGSGKSTlA~~LAk~  101 (177)
                      .+.++|+|+|.+|+|||++..+|...
T Consensus        26 ~~~~ki~v~G~~~vGKSsli~~l~~~   51 (196)
T 2atv_A           26 SAEVKLAIFGRAGVGKSALVVRFLTK   51 (196)
T ss_dssp             -CCEEEEEECCTTSSHHHHHHHHHHS
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHhC
Confidence            46789999999999999999999764

>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*

Probab=96.38  E-value=0.0024  Score=54.53  Aligned_cols=27  Identities=19%  Similarity=0.198  Sum_probs=24.1

Q ss_pred             CCCeEEEEEcCCCCCchHHHHHHHHHh
Q 030464           76 RRGVHWAFIGSPRAKKHVYAEMLSKLL  102 (177)
Q Consensus        76 ~~~~~IlIiGpPGSGKSTlA~~LAk~l  102 (177)
                      .++-.|.|+|++||||||+++.|+..+
T Consensus       127 ~~g~vi~lvG~nGaGKTTll~~Lag~l  153 (328)
T 3e70_C          127 EKPYVIMFVGFNGSGKTTTIAKLANWL  153 (328)
T ss_dssp             CSSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            467889999999999999999998765

>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*

Probab=96.38  E-value=0.0018  Score=47.33  Aligned_cols=23  Identities=17%  Similarity=0.294  Sum_probs=20.5

Q ss_pred             CeEEEEEcCCCCCchHHHHHHHH
Q 030464           78 GVHWAFIGSPRAKKHVYAEMLSK  100 (177)
Q Consensus        78 ~~~IlIiGpPGSGKSTlA~~LAk  100 (177)
                      .++|+|+|.||+|||++..++..
T Consensus         2 ~~ki~~vG~~~~GKSsli~~l~~   24 (166)
T 3q72_A            2 VYKVLLLGAPGVGKSALARIFGG   24 (166)
T ss_dssp             CCEEEEEESTTSSHHHHHHHHCC
T ss_pred             eEEEEEECCCCCCHHHHHHHHcC
Confidence            46899999999999999999853

>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}

Probab=96.37  E-value=0.0015  Score=53.57  Aligned_cols=32  Identities=13%  Similarity=-0.049  Sum_probs=27.4

Q ss_pred             eEEEEEcCCCCCchHHHHHHHHHhCCCeeeCc
Q 030464           79 VHWAFIGSPRAKKHVYAEMLSKLLEVPRISMS  110 (177)
Q Consensus        79 ~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~  110 (177)
                      ..++|.|++|+|||++++.+++..++.+++..
T Consensus        32 ~~v~i~G~~G~GKT~Ll~~~~~~~~~~~~~~~   63 (350)
T 2qen_A           32 PLTLLLGIRRVGKSSLLRAFLNERPGILIDCR   63 (350)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHHHSSEEEEEHH
T ss_pred             CeEEEECCCcCCHHHHHHHHHHHcCcEEEEee
Confidence            47899999999999999999998876666654

>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A

Probab=96.37  E-value=0.0024  Score=49.78  Aligned_cols=25  Identities=20%  Similarity=0.025  Sum_probs=21.7

Q ss_pred             CeEEEEEcCCCCCchHHHHHHHHHh
Q 030464           78 GVHWAFIGSPRAKKHVYAEMLSKLL  102 (177)
Q Consensus        78 ~~~IlIiGpPGSGKSTlA~~LAk~l  102 (177)
                      ...++|+|++||||||+++.|...+
T Consensus         6 ~~~i~i~G~sGsGKTTl~~~l~~~l   30 (174)
T 1np6_A            6 IPLLAFAAWSGTGKTTLLKKLIPAL   30 (174)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             ceEEEEEeCCCCCHHHHHHHHHHhc
Confidence            4578899999999999999998764

>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*

Probab=96.36  E-value=0.0021  Score=54.60  Aligned_cols=30  Identities=27%  Similarity=0.414  Sum_probs=26.1

Q ss_pred             cccCCCeEEEEEcCCCCCchHHHHHHHHHh
Q 030464           73 RERRRGVHWAFIGSPRAKKHVYAEMLSKLL  102 (177)
Q Consensus        73 ~~~~~~~~IlIiGpPGSGKSTlA~~LAk~l  102 (177)
                      ....++-.+.|+||+||||||+++.|+..+
T Consensus       121 l~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~  150 (305)
T 2v9p_A          121 KGIPKKNCLAFIGPPNTGKSMLCNSLIHFL  150 (305)
T ss_dssp             HTCTTCSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred             EEecCCCEEEEECCCCCcHHHHHHHHhhhc
Confidence            344677889999999999999999999876

>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*

Probab=96.36  E-value=0.0015  Score=49.42  Aligned_cols=23  Identities=17%  Similarity=0.273  Sum_probs=20.5

Q ss_pred             CeEEEEEcCCCCCchHHHHHHHH
Q 030464           78 GVHWAFIGSPRAKKHVYAEMLSK  100 (177)
Q Consensus        78 ~~~IlIiGpPGSGKSTlA~~LAk  100 (177)
                      .++|+|+|++|+||||+..+++.
T Consensus         2 ~~kv~ivG~~gvGKStLl~~l~~   24 (184)
T 2zej_A            2 RMKLMIVGNTGSGKTTLLQQLMK   24 (184)
T ss_dssp             -CEEEEESCTTSSHHHHHHHHTC
T ss_pred             ceEEEEECCCCCCHHHHHHHHhc
Confidence            36899999999999999999976

>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}

Probab=96.35  E-value=0.0022  Score=53.66  Aligned_cols=34  Identities=12%  Similarity=0.145  Sum_probs=26.4

Q ss_pred             CeEEEEEcCCCCCchHHHHHHHHHh---C--CCeeeCch
Q 030464           78 GVHWAFIGSPRAKKHVYAEMLSKLL---E--VPRISMSS  111 (177)
Q Consensus        78 ~~~IlIiGpPGSGKSTlA~~LAk~l---g--l~~Is~~d  111 (177)
                      +..|+|.|+||+|||++|+.|++..   +  +..++...
T Consensus        25 ~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~~~v~v~~~~   63 (304)
T 1ojl_A           25 DATVLIHGDSGTGKELVARALHACSARSDRPLVTLNCAA   63 (304)
T ss_dssp             TSCEEEESCTTSCHHHHHHHHHHHSSCSSSCCCEEECSS
T ss_pred             CCcEEEECCCCchHHHHHHHHHHhCcccCCCeEEEeCCC
Confidence            4569999999999999999999854   2  44565544

>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*

Probab=96.35  E-value=0.0019  Score=48.20  Aligned_cols=26  Identities=12%  Similarity=0.080  Sum_probs=23.0

Q ss_pred             CCCeEEEEEcCCCCCchHHHHHHHHH
Q 030464           76 RRGVHWAFIGSPRAKKHVYAEMLSKL  101 (177)
Q Consensus        76 ~~~~~IlIiGpPGSGKSTlA~~LAk~  101 (177)
                      .+.++|+|+|++|+|||++..+|...
T Consensus         8 ~~~~ki~v~G~~~~GKSsli~~l~~~   33 (186)
T 2bme_A            8 DFLFKFLVIGNAGTGKSCLLHQFIEK   33 (186)
T ss_dssp             SEEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred             ccceEEEEECCCCCCHHHHHHHHHcC
Confidence            45689999999999999999999764

>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}

Probab=96.35  E-value=0.0019  Score=51.28  Aligned_cols=26  Identities=12%  Similarity=0.138  Sum_probs=22.6

Q ss_pred             CCCeEEEEEcCCCCCchHHHHHHHHH
Q 030464           76 RRGVHWAFIGSPRAKKHVYAEMLSKL  101 (177)
Q Consensus        76 ~~~~~IlIiGpPGSGKSTlA~~LAk~  101 (177)
                      .+.++|+|+|.+|+||||+...|...
T Consensus        27 ~~~~~i~lvG~~g~GKStlin~l~g~   52 (239)
T 3lxx_A           27 NSQLRIVLVGKTGAGKSATGNSILGR   52 (239)
T ss_dssp             -CEEEEEEECCTTSSHHHHHHHHHTS
T ss_pred             CCceEEEEECCCCCCHHHHHHHHcCC
Confidence            46689999999999999999998764

>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}

Probab=96.34  E-value=0.002  Score=50.20  Aligned_cols=25  Identities=16%  Similarity=0.235  Sum_probs=22.7

Q ss_pred             CCCeEEEEEcCCCCCchHHHHHHHH
Q 030464           76 RRGVHWAFIGSPRAKKHVYAEMLSK  100 (177)
Q Consensus        76 ~~~~~IlIiGpPGSGKSTlA~~LAk  100 (177)
                      .+.++|+|+|.+|+|||++..+|..
T Consensus        32 ~~~~ki~vvG~~~vGKSsli~~l~~   56 (214)
T 2j1l_A           32 VRSVKVVLVGDGGCGKTSLLMVFAD   56 (214)
T ss_dssp             CCEEEEEEEECTTSSHHHHHHHHHC
T ss_pred             cceEEEEEECcCCCCHHHHHHHHHc
Confidence            4678999999999999999999975

>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=96.33  E-value=0.0025  Score=48.05  Aligned_cols=25  Identities=12%  Similarity=0.058  Sum_probs=22.6

Q ss_pred             CCCeEEEEEcCCCCCchHHHHHHHH
Q 030464           76 RRGVHWAFIGSPRAKKHVYAEMLSK  100 (177)
Q Consensus        76 ~~~~~IlIiGpPGSGKSTlA~~LAk  100 (177)
                      ...++|+|+|.+|+||||+..+|..
T Consensus         6 ~~~~ki~vvG~~~~GKSsli~~l~~   30 (199)
T 2gf0_A            6 SNDYRVVVFGAGGVGKSSLVLRFVK   30 (199)
T ss_dssp             CCCEEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCeeEEEEECCCCCcHHHHHHHHHc
Confidence            4568999999999999999999976

>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*

Probab=96.32  E-value=0.0021  Score=55.71  Aligned_cols=33  Identities=15%  Similarity=0.263  Sum_probs=22.4

Q ss_pred             ccCccCcccCCCeEEEEEcCCCCCchHHHHHHH
Q 030464           67 LPDTEGRERRRGVHWAFIGSPRAKKHVYAEMLS   99 (177)
Q Consensus        67 ~~~~~~~~~~~~~~IlIiGpPGSGKSTlA~~LA   99 (177)
                      .+..+.....+.++|+|+|.+||||||+++++.
T Consensus        22 ~l~~~~~~~~~~~killlG~~~SGKST~~kq~~   54 (362)
T 1zcb_A           22 NLREDGERSARLVKILLLGAGESGKSTFLKQMR   54 (362)
T ss_dssp             ---------CCCEEEEEECSTTSSHHHHHHHHH
T ss_pred             HHHHhHHHhcCccEEEEECCCCCcHHHHHHHHH
Confidence            344444445678999999999999999999984

>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A

Probab=96.32  E-value=0.003  Score=48.36  Aligned_cols=27  Identities=11%  Similarity=0.075  Sum_probs=24.3

Q ss_pred             CCCeEEEEEcCCCCCchHHHHHHHHHh
Q 030464           76 RRGVHWAFIGSPRAKKHVYAEMLSKLL  102 (177)
Q Consensus        76 ~~~~~IlIiGpPGSGKSTlA~~LAk~l  102 (177)
                      .++-.+.|+||.||||||+.+.|+..+
T Consensus        31 ~~Ge~v~L~G~nGaGKTTLlr~l~g~l   57 (158)
T 1htw_A           31 EKAIMVYLNGDLGAGKTTLTRGMLQGI   57 (158)
T ss_dssp             SSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHHhC
Confidence            566789999999999999999999876

>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}

Probab=96.31  E-value=0.0028  Score=52.21  Aligned_cols=28  Identities=11%  Similarity=0.063  Sum_probs=24.0

Q ss_pred             cCCCeEEEEEcCCCCCchHHHHHHHHHh
Q 030464           75 RRRGVHWAFIGSPRAKKHVYAEMLSKLL  102 (177)
Q Consensus        75 ~~~~~~IlIiGpPGSGKSTlA~~LAk~l  102 (177)
                      ..++-.++|+||.||||||+.+.|+..+
T Consensus        22 i~~g~~v~i~Gp~GsGKSTll~~l~g~~   49 (261)
T 2eyu_A           22 HRKMGLILVTGPTGSGKSTTIASMIDYI   49 (261)
T ss_dssp             GCSSEEEEEECSTTCSHHHHHHHHHHHH
T ss_pred             hCCCCEEEEECCCCccHHHHHHHHHHhC
Confidence            3566789999999999999999998754

>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A

Probab=96.30  E-value=0.0028  Score=53.15  Aligned_cols=26  Identities=15%  Similarity=0.137  Sum_probs=22.7

Q ss_pred             CeEEEEEcCCCCCchHHHHHHHHHhC
Q 030464           78 GVHWAFIGSPRAKKHVYAEMLSKLLE  103 (177)
Q Consensus        78 ~~~IlIiGpPGSGKSTlA~~LAk~lg  103 (177)
                      .-.|+|.||||+|||.+|..||..++
T Consensus       104 ~n~~~l~GppgtGKt~~a~ala~~~~  129 (267)
T 1u0j_A          104 RNTIWLFGPATTGKTNIAEAIAHTVP  129 (267)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHHSS
T ss_pred             CcEEEEECCCCCCHHHHHHHHHhhhc
Confidence            34699999999999999999998653

>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*

Probab=96.30  E-value=0.0024  Score=48.62  Aligned_cols=26  Identities=8%  Similarity=0.046  Sum_probs=22.7

Q ss_pred             CCCeEEEEEcCCCCCchHHHHHHHHH
Q 030464           76 RRGVHWAFIGSPRAKKHVYAEMLSKL  101 (177)
Q Consensus        76 ~~~~~IlIiGpPGSGKSTlA~~LAk~  101 (177)
                      .+.++|+|+|.+|+||||+..+|...
T Consensus         6 ~~~~ki~v~G~~~~GKSsli~~l~~~   31 (207)
T 1vg8_A            6 KVLLKVIILGDSGVGKTSLMNQYVNK   31 (207)
T ss_dssp             -CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred             CcceEEEEECcCCCCHHHHHHHHHcC
Confidence            46689999999999999999999764

>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}

Probab=96.29  E-value=0.0038  Score=52.56  Aligned_cols=28  Identities=18%  Similarity=0.127  Sum_probs=24.4

Q ss_pred             cCCCeEEEEEcCCCCCchHHHHHHHHHh
Q 030464           75 RRRGVHWAFIGSPRAKKHVYAEMLSKLL  102 (177)
Q Consensus        75 ~~~~~~IlIiGpPGSGKSTlA~~LAk~l  102 (177)
                      ..++-.|.|+|+.||||||+++.|+..+
T Consensus        97 ~~~g~vi~lvG~nGsGKTTll~~Lag~l  124 (302)
T 3b9q_A           97 FRKPAVIMIVGVNGGGKTTSLGKLAHRL  124 (302)
T ss_dssp             SSSCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             cCCCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence            3467789999999999999999998865

>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...

Probab=96.29  E-value=0.0026  Score=46.37  Aligned_cols=23  Identities=17%  Similarity=0.044  Sum_probs=20.7

Q ss_pred             eEEEEEcCCCCCchHHHHHHHHH
Q 030464           79 VHWAFIGSPRAKKHVYAEMLSKL  101 (177)
Q Consensus        79 ~~IlIiGpPGSGKSTlA~~LAk~  101 (177)
                      ++|+|+|.+|+|||++..++...
T Consensus         1 ~ki~~~G~~~~GKssl~~~l~~~   23 (164)
T 1r8s_A            1 MRILMVGLDAAGKTTILYKLKLG   23 (164)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHcC
Confidence            47999999999999999999764

>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*

Probab=96.28  E-value=0.0025  Score=53.79  Aligned_cols=26  Identities=15%  Similarity=0.172  Sum_probs=23.0

Q ss_pred             CCeEEEEEcCCCCCchHHHHHHHHHh
Q 030464           77 RGVHWAFIGSPRAKKHVYAEMLSKLL  102 (177)
Q Consensus        77 ~~~~IlIiGpPGSGKSTlA~~LAk~l  102 (177)
                      ++-.|.|+||+||||||+++.|+..+
T Consensus       101 ~g~vi~lvG~nGsGKTTll~~Lagll  126 (304)
T 1rj9_A          101 KGRVVLVVGVNGVGKTTTIAKLGRYY  126 (304)
T ss_dssp             SSSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCcHHHHHHHHHHHH
Confidence            46688999999999999999999765

>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20

Probab=96.28  E-value=0.0018  Score=61.38  Aligned_cols=25  Identities=24%  Similarity=0.283  Sum_probs=22.7

Q ss_pred             CeEEEEEcCCCCCchHHHHHHHHHh
Q 030464           78 GVHWAFIGSPRAKKHVYAEMLSKLL  102 (177)
Q Consensus        78 ~~~IlIiGpPGSGKSTlA~~LAk~l  102 (177)
                      +..++|+|+||+|||++++.|++.+
T Consensus       191 ~~~vlL~G~pG~GKT~la~~la~~l  215 (854)
T 1qvr_A          191 KNNPVLIGEPGVGKTAIVEGLAQRI  215 (854)
T ss_dssp             CCCCEEEECTTSCHHHHHHHHHHHH
T ss_pred             CCceEEEcCCCCCHHHHHHHHHHHH
Confidence            4568999999999999999999987

>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}

Probab=96.28  E-value=0.0018  Score=49.03  Aligned_cols=27  Identities=19%  Similarity=0.159  Sum_probs=22.6

Q ss_pred             CCCeEEEEEcCCCCCchHHHHHHHHHh
Q 030464           76 RRGVHWAFIGSPRAKKHVYAEMLSKLL  102 (177)
Q Consensus        76 ~~~~~IlIiGpPGSGKSTlA~~LAk~l  102 (177)
                      .+.++|+|+|.+|+|||++..+|....
T Consensus        19 ~~~~ki~v~G~~~~GKSsli~~l~~~~   45 (190)
T 2h57_A           19 SKEVHVLCLGLDNSGKTTIINKLKPSN   45 (190)
T ss_dssp             --CEEEEEEECTTSSHHHHHHHTSCGG
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhcCC
Confidence            577899999999999999999997654

>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=96.28  E-value=0.0027  Score=48.57  Aligned_cols=27  Identities=11%  Similarity=0.006  Sum_probs=22.0

Q ss_pred             cCCCeEEEEEcCCCCCchHHHHHHHHH
Q 030464           75 RRRGVHWAFIGSPRAKKHVYAEMLSKL  101 (177)
Q Consensus        75 ~~~~~~IlIiGpPGSGKSTlA~~LAk~  101 (177)
                      ....++|+|+|.+|+||||+..+|...
T Consensus        17 ~~~~~~i~v~G~~~~GKSsli~~l~~~   43 (213)
T 3cph_A           17 YDSIMKILLIGDSGVGKSCLLVRFVED   43 (213)
T ss_dssp             ---CEEEEEECSTTSSHHHHHHHHHHC
T ss_pred             CCcceEEEEECCCCCCHHHHHHHHHhC
Confidence            356789999999999999999999753

>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*

Probab=96.27  E-value=0.0025  Score=47.78  Aligned_cols=26  Identities=15%  Similarity=0.187  Sum_probs=22.7

Q ss_pred             CCCeEEEEEcCCCCCchHHHHHHHHH
Q 030464           76 RRGVHWAFIGSPRAKKHVYAEMLSKL  101 (177)
Q Consensus        76 ~~~~~IlIiGpPGSGKSTlA~~LAk~  101 (177)
                      .+..+|+|+|.+|+|||++..++...
T Consensus        16 ~~~~~i~v~G~~~~GKssl~~~l~~~   41 (186)
T 1ksh_A           16 ERELRLLMLGLDNAGKTTILKKFNGE   41 (186)
T ss_dssp             -CCEEEEEECSTTSSHHHHHHHHTTC
T ss_pred             CCeeEEEEECCCCCCHHHHHHHHhcC
Confidence            46789999999999999999999753

>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8

Probab=96.27  E-value=0.0023  Score=48.04  Aligned_cols=26  Identities=12%  Similarity=0.033  Sum_probs=23.2

Q ss_pred             CCCeEEEEEcCCCCCchHHHHHHHHH
Q 030464           76 RRGVHWAFIGSPRAKKHVYAEMLSKL  101 (177)
Q Consensus        76 ~~~~~IlIiGpPGSGKSTlA~~LAk~  101 (177)
                      .+.++|+|+|.+|+|||++..+|...
T Consensus        13 ~~~~~i~v~G~~~~GKssli~~l~~~   38 (195)
T 1x3s_A           13 LTTLKILIIGESGVGKSSLLLRFTDD   38 (195)
T ss_dssp             EEEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHcC
Confidence            46689999999999999999999764

>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*

Probab=96.27  E-value=0.0023  Score=48.93  Aligned_cols=25  Identities=24%  Similarity=0.315  Sum_probs=21.0

Q ss_pred             CCCeEEEEEcCCCCCchHHHHHHHH
Q 030464           76 RRGVHWAFIGSPRAKKHVYAEMLSK  100 (177)
Q Consensus        76 ~~~~~IlIiGpPGSGKSTlA~~LAk  100 (177)
                      .+..+|+|+|++|+|||++..++..
T Consensus        21 ~~~~ki~~vG~~~vGKSsli~~l~~   45 (190)
T 1m2o_B           21 NKHGKLLFLGLDNAGKTTLLHMLKN   45 (190)
T ss_dssp             ---CEEEEEESTTSSHHHHHHHHHH
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhc
Confidence            4667999999999999999999986

>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A

Probab=96.27  E-value=0.0019  Score=48.00  Aligned_cols=26  Identities=12%  Similarity=0.112  Sum_probs=23.1

Q ss_pred             CCCeEEEEEcCCCCCchHHHHHHHHH
Q 030464           76 RRGVHWAFIGSPRAKKHVYAEMLSKL  101 (177)
Q Consensus        76 ~~~~~IlIiGpPGSGKSTlA~~LAk~  101 (177)
                      .+.++|+|+|.+|+|||++..++...
T Consensus         5 ~~~~ki~~vG~~~vGKTsli~~l~~~   30 (178)
T 2iwr_A            5 IPELRLGVLGDARSGKSSLIHRFLTG   30 (178)
T ss_dssp             CCEEEEEEECCGGGCHHHHHHHHHHS
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHhC
Confidence            46689999999999999999999864

>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8

Probab=96.27  E-value=0.0022  Score=48.78  Aligned_cols=26  Identities=12%  Similarity=0.092  Sum_probs=23.2

Q ss_pred             CCCeEEEEEcCCCCCchHHHHHHHHH
Q 030464           76 RRGVHWAFIGSPRAKKHVYAEMLSKL  101 (177)
Q Consensus        76 ~~~~~IlIiGpPGSGKSTlA~~LAk~  101 (177)
                      .+.++|+|+|.+|+|||++..+|...
T Consensus        21 ~~~~ki~vvG~~~~GKSsli~~l~~~   46 (192)
T 2fg5_A           21 IRELKVCLLGDTGVGKSSIVCRFVQD   46 (192)
T ss_dssp             CEEEEEEEEECTTSSHHHHHHHHHHC
T ss_pred             CCceEEEEECcCCCCHHHHHHHHhcC
Confidence            46789999999999999999999764

>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20

Probab=96.27  E-value=0.0021  Score=60.94  Aligned_cols=37  Identities=30%  Similarity=0.465  Sum_probs=28.1

Q ss_pred             CCCe-EEEEEcCCCCCchHHHHHHHHHh---CCC--eeeCchh
Q 030464           76 RRGV-HWAFIGSPRAKKHVYAEMLSKLL---EVP--RISMSSI  112 (177)
Q Consensus        76 ~~~~-~IlIiGpPGSGKSTlA~~LAk~l---gl~--~Is~~dL  112 (177)
                      .++. .++|.||||+|||++|+.|++.+   +.+  .+++.++
T Consensus       585 ~~p~~~vLl~Gp~GtGKT~lA~~la~~~~~~~~~~i~i~~~~~  627 (854)
T 1qvr_A          585 NRPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEY  627 (854)
T ss_dssp             SSCSEEEEEBSCSSSSHHHHHHHHHHHHHSSGGGEEEECTTTC
T ss_pred             CCCceEEEEECCCCCCHHHHHHHHHHHhcCCCCcEEEEechhc
Confidence            3443 78999999999999999999987   433  4555544

>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*

Probab=96.24  E-value=0.0022  Score=47.79  Aligned_cols=24  Identities=13%  Similarity=0.138  Sum_probs=22.0

Q ss_pred             CCeEEEEEcCCCCCchHHHHHHHH
Q 030464           77 RGVHWAFIGSPRAKKHVYAEMLSK  100 (177)
Q Consensus        77 ~~~~IlIiGpPGSGKSTlA~~LAk  100 (177)
                      +.++|+|+|.+|+||||+..+|..
T Consensus         5 ~~~ki~~~G~~~~GKSsli~~l~~   28 (181)
T 3t5g_A            5 KSRKIAILGYRSVGKSSLTIQFVE   28 (181)
T ss_dssp             EEEEEEEEESTTSSHHHHHHHHHH
T ss_pred             ceEEEEEECcCCCCHHHHHHHHHc
Confidence            568999999999999999999974

>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*

Probab=96.24  E-value=0.0025  Score=48.32  Aligned_cols=26  Identities=15%  Similarity=0.193  Sum_probs=23.5

Q ss_pred             CCCeEEEEEcCCCCCchHHHHHHHHH
Q 030464           76 RRGVHWAFIGSPRAKKHVYAEMLSKL  101 (177)
Q Consensus        76 ~~~~~IlIiGpPGSGKSTlA~~LAk~  101 (177)
                      .+.++|+|+|.+|+|||++..++...
T Consensus        21 ~~~~ki~~vG~~~~GKSsl~~~l~~~   46 (194)
T 3reg_A           21 KKALKIVVVGDGAVGKTCLLLAFSKG   46 (194)
T ss_dssp             CEEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             ceeeEEEEECcCCCCHHHHHHHHhcC
Confidence            46789999999999999999999774

>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*

Probab=96.24  E-value=0.0026  Score=53.44  Aligned_cols=27  Identities=19%  Similarity=0.113  Sum_probs=23.1

Q ss_pred             CCCeEEEEEcCCCCCchHHHHHHHHHh
Q 030464           76 RRGVHWAFIGSPRAKKHVYAEMLSKLL  102 (177)
Q Consensus        76 ~~~~~IlIiGpPGSGKSTlA~~LAk~l  102 (177)
                      .++.+|+|+|++|+||||++..||..+
T Consensus       103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l  129 (296)
T 2px0_A          103 IHSKYIVLFGSTGAGKTTTLAKLAAIS  129 (296)
T ss_dssp             CCSSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence            356788999999999999999998654

>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*

Probab=96.24  E-value=0.0024  Score=48.14  Aligned_cols=26  Identities=15%  Similarity=0.088  Sum_probs=22.9

Q ss_pred             CCCeEEEEEcCCCCCchHHHHHHHHH
Q 030464           76 RRGVHWAFIGSPRAKKHVYAEMLSKL  101 (177)
Q Consensus        76 ~~~~~IlIiGpPGSGKSTlA~~LAk~  101 (177)
                      .+.++|+|+|.+|+||||+..+|...
T Consensus        21 ~~~~~i~v~G~~~~GKSsli~~l~~~   46 (195)
T 1svi_A           21 GGLPEIALAGRSNVGKSSFINSLINR   46 (195)
T ss_dssp             SCCCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCC
Confidence            36789999999999999999999754

>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20

Probab=96.24  E-value=0.0056  Score=51.58  Aligned_cols=25  Identities=12%  Similarity=0.113  Sum_probs=22.8

Q ss_pred             CeEEEEEcCCCCCchHHHHHHHHHh
Q 030464           78 GVHWAFIGSPRAKKHVYAEMLSKLL  102 (177)
Q Consensus        78 ~~~IlIiGpPGSGKSTlA~~LAk~l  102 (177)
                      .+.++|.||||+|||++|+.+++..
T Consensus        18 ~~~~Lf~Gp~G~GKtt~a~~la~~~   42 (305)
T 2gno_A           18 GISILINGEDLSYPREVSLELPEYV   42 (305)
T ss_dssp             SEEEEEECSSSSHHHHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHhC
Confidence            5789999999999999999999864

>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1

Probab=96.24  E-value=0.0022  Score=54.68  Aligned_cols=28  Identities=18%  Similarity=0.286  Sum_probs=25.0

Q ss_pred             CeEEEEEcCCCCCchHHHHHHHHHhCCC
Q 030464           78 GVHWAFIGSPRAKKHVYAEMLSKLLEVP  105 (177)
Q Consensus        78 ~~~IlIiGpPGSGKSTlA~~LAk~lgl~  105 (177)
                      ..++.|+|++||||||+++.|+..+...
T Consensus       170 g~k~~IvG~nGsGKSTLlk~L~gl~~~~  197 (365)
T 1lw7_A          170 AKTVAILGGESSGKSVLVNKLAAVFNTT  197 (365)
T ss_dssp             CEEEEEECCTTSHHHHHHHHHHHHTTCE
T ss_pred             hCeEEEECCCCCCHHHHHHHHHHHhCCC
Confidence            6789999999999999999999987654

>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}

Probab=96.22  E-value=0.0016  Score=58.74  Aligned_cols=25  Identities=20%  Similarity=0.251  Sum_probs=22.8

Q ss_pred             eEEEEEcCCCCCchHHHHHHHHHhC
Q 030464           79 VHWAFIGSPRAKKHVYAEMLSKLLE  103 (177)
Q Consensus        79 ~~IlIiGpPGSGKSTlA~~LAk~lg  103 (177)
                      ..|+|.||||+|||++|+.|++..+
T Consensus        42 ~~VLL~GpPGtGKT~LAraLa~~l~   66 (500)
T 3nbx_X           42 ESVFLLGPPGIAKSLIARRLKFAFQ   66 (500)
T ss_dssp             CEEEEECCSSSSHHHHHHHGGGGBS
T ss_pred             CeeEeecCchHHHHHHHHHHHHHHh
Confidence            4799999999999999999999774

>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=96.22  E-value=0.0029  Score=47.68  Aligned_cols=25  Identities=16%  Similarity=0.084  Sum_probs=22.9

Q ss_pred             CCCeEEEEEcCCCCCchHHHHHHHH
Q 030464           76 RRGVHWAFIGSPRAKKHVYAEMLSK  100 (177)
Q Consensus        76 ~~~~~IlIiGpPGSGKSTlA~~LAk  100 (177)
                      .+..+|+|+|.+|+|||++..+|..
T Consensus        14 ~~~~~i~v~G~~~~GKssl~~~l~~   38 (187)
T 1zj6_A           14 HQEHKVIIVGLDNAGKTTILYQFSM   38 (187)
T ss_dssp             TSCEEEEEEESTTSSHHHHHHHHHT
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhc
Confidence            4678999999999999999999984

>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=96.22  E-value=0.0025  Score=48.31  Aligned_cols=27  Identities=11%  Similarity=0.020  Sum_probs=24.0

Q ss_pred             CCCeEEEEEcCCCCCchHHHHHHHHHh
Q 030464           76 RRGVHWAFIGSPRAKKHVYAEMLSKLL  102 (177)
Q Consensus        76 ~~~~~IlIiGpPGSGKSTlA~~LAk~l  102 (177)
                      ...++|+|+|.+|+|||++..+|....
T Consensus        21 ~~~~ki~v~G~~~~GKSsli~~l~~~~   47 (191)
T 3dz8_A           21 DYMFKLLIIGNSSVGKTSFLFRYADDT   47 (191)
T ss_dssp             EECEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred             CeeeEEEEECCCCcCHHHHHHHHhcCC
Confidence            467899999999999999999998754

>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}

Probab=96.22  E-value=0.0028  Score=48.18  Aligned_cols=27  Identities=19%  Similarity=0.250  Sum_probs=21.5

Q ss_pred             cCCCeEEEEEcCCCCCchHHHHHHHHH
Q 030464           75 RRRGVHWAFIGSPRAKKHVYAEMLSKL  101 (177)
Q Consensus        75 ~~~~~~IlIiGpPGSGKSTlA~~LAk~  101 (177)
                      +.+.++|+|+|.+|+|||++..++...
T Consensus        17 ~~~~~ki~~~G~~~~GKssl~~~l~~~   43 (201)
T 2q3h_A           17 EGRGVKCVLVGDGAVGKTSLVVSYTTN   43 (201)
T ss_dssp             ---CEEEEEECSTTSSHHHHHHHHHC-
T ss_pred             CCcceEEEEECCCCCCHHHHHHHHHhC
Confidence            457789999999999999999998743

>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*

Probab=96.21  E-value=0.0032  Score=53.02  Aligned_cols=30  Identities=13%  Similarity=0.040  Sum_probs=25.7

Q ss_pred             CCeEEEEEcCCCCCchHHHHHHHHHhCCCe
Q 030464           77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPR  106 (177)
Q Consensus        77 ~~~~IlIiGpPGSGKSTlA~~LAk~lgl~~  106 (177)
                      .+..++|.||||+|||++|+.+++.+....
T Consensus        23 ~~~a~L~~G~~G~GKt~~a~~la~~l~~~~   52 (334)
T 1a5t_A           23 GHHALLIQALPGMGDDALIYALSRYLLCQQ   52 (334)
T ss_dssp             CCSEEEEECCTTSCHHHHHHHHHHHHTCSS
T ss_pred             cceeEEEECCCCchHHHHHHHHHHHHhCCC
Confidence            345699999999999999999999987543

>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*

Probab=96.21  E-value=0.0018  Score=49.48  Aligned_cols=28  Identities=11%  Similarity=0.065  Sum_probs=21.9

Q ss_pred             ccCCCeEEEEEcCCCCCchHHHHHHHHH
Q 030464           74 ERRRGVHWAFIGSPRAKKHVYAEMLSKL  101 (177)
Q Consensus        74 ~~~~~~~IlIiGpPGSGKSTlA~~LAk~  101 (177)
                      .+.+.++|+|+|.+|+|||++.+++...
T Consensus        16 ~~~~~~ki~~vG~~~vGKTsLi~~l~~~   43 (196)
T 3llu_A           16 FQGSKPRILLMGLRRSGKSSIQKVVFHK   43 (196)
T ss_dssp             ----CCEEEEEESTTSSHHHHHHHHHSC
T ss_pred             ccCcceEEEEECCCCCCHHHHHHHHHhc
Confidence            3457789999999999999999988664

>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A

Probab=96.21  E-value=0.0034  Score=46.97  Aligned_cols=26  Identities=19%  Similarity=0.127  Sum_probs=22.8

Q ss_pred             CCCeEEEEEcCCCCCchHHHHHHHHH
Q 030464           76 RRGVHWAFIGSPRAKKHVYAEMLSKL  101 (177)
Q Consensus        76 ~~~~~IlIiGpPGSGKSTlA~~LAk~  101 (177)
                      ...++|+|+|.+|+||||+..+|...
T Consensus        21 ~~~~~i~v~G~~~~GKSsli~~l~~~   46 (195)
T 3pqc_A           21 PLKGEVAFVGRSNVGKSSLLNALFNR   46 (195)
T ss_dssp             CTTCEEEEEEBTTSSHHHHHHHHHTS
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHcC
Confidence            35679999999999999999999765

>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}

Probab=96.20  E-value=0.0026  Score=49.04  Aligned_cols=26  Identities=8%  Similarity=0.043  Sum_probs=22.9

Q ss_pred             CCCeEEEEEcCCCCCchHHHHHHHHH
Q 030464           76 RRGVHWAFIGSPRAKKHVYAEMLSKL  101 (177)
Q Consensus        76 ~~~~~IlIiGpPGSGKSTlA~~LAk~  101 (177)
                      .+.++|+|+|.+|+|||++..+|...
T Consensus        27 ~~~~ki~vvG~~~vGKSsli~~l~~~   52 (201)
T 2hup_A           27 DFLFKLVLVGDASVGKTCVVQRFKTG   52 (201)
T ss_dssp             CEEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred             ccceEEEEECcCCCCHHHHHHHHhhC
Confidence            56689999999999999999999653

>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*

Probab=96.18  E-value=0.003  Score=48.32  Aligned_cols=25  Identities=16%  Similarity=0.158  Sum_probs=22.6

Q ss_pred             CCCeEEEEEcCCCCCchHHHHHHHH
Q 030464           76 RRGVHWAFIGSPRAKKHVYAEMLSK  100 (177)
Q Consensus        76 ~~~~~IlIiGpPGSGKSTlA~~LAk  100 (177)
                      .+.++|+|+|.+|+|||++..++..
T Consensus        27 ~~~~ki~v~G~~~vGKSsLi~~l~~   51 (192)
T 2b6h_A           27 KKQMRILMVGLDAAGKTTILYKLKL   51 (192)
T ss_dssp             TSCEEEEEEESTTSSHHHHHHHHCS
T ss_pred             CCccEEEEECCCCCCHHHHHHHHHh
Confidence            5779999999999999999999854

>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*

Probab=96.18  E-value=0.0038  Score=49.73  Aligned_cols=27  Identities=15%  Similarity=0.277  Sum_probs=23.7

Q ss_pred             CCCeEEEEEcCCCCCchHHHHHHHHHh
Q 030464           76 RRGVHWAFIGSPRAKKHVYAEMLSKLL  102 (177)
Q Consensus        76 ~~~~~IlIiGpPGSGKSTlA~~LAk~l  102 (177)
                      .+...+++.|.+|+||||++..|+..+
T Consensus        12 ~~~~i~~~~GkgGvGKTTl~~~La~~l   38 (262)
T 1yrb_A           12 MASMIVVFVGTAGSGKTTLTGEFGRYL   38 (262)
T ss_dssp             CCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             cceEEEEEeCCCCCCHHHHHHHHHHHH
Confidence            467889999999999999999998654

>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*

Probab=96.17  E-value=0.0036  Score=58.16  Aligned_cols=26  Identities=23%  Similarity=0.178  Sum_probs=23.6

Q ss_pred             CCeEEEEEcCCCCCchHHHHHHHHHh
Q 030464           77 RGVHWAFIGSPRAKKHVYAEMLSKLL  102 (177)
Q Consensus        77 ~~~~IlIiGpPGSGKSTlA~~LAk~l  102 (177)
                      .+..++|+|+||+|||++++.|++.+
T Consensus       206 ~~~~vlL~G~~GtGKT~la~~la~~l  231 (758)
T 1r6b_X          206 RKNNPLLVGESGVGKTAIAEGLAWRI  231 (758)
T ss_dssp             SSCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCCCeEEEcCCCCCHHHHHHHHHHHH
Confidence            45678999999999999999999986

>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8

Probab=96.16  E-value=0.0016  Score=49.96  Aligned_cols=27  Identities=26%  Similarity=0.340  Sum_probs=23.1

Q ss_pred             cCCCeEEEEEcCCCCCchHHHHHHHHH
Q 030464           75 RRRGVHWAFIGSPRAKKHVYAEMLSKL  101 (177)
Q Consensus        75 ~~~~~~IlIiGpPGSGKSTlA~~LAk~  101 (177)
                      ..++.+|+|+|++|+||||+.+.|+..
T Consensus        23 ~~~~~~v~lvG~~g~GKSTLl~~l~g~   49 (210)
T 1pui_A           23 SDTGIEVAFAGRSNAGKSSALNTLTNQ   49 (210)
T ss_dssp             CSCSEEEEEEECTTSSHHHHHTTTCCC
T ss_pred             CCCCcEEEEECCCCCCHHHHHHHHhCC
Confidence            356789999999999999999988643

>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*

Probab=96.16  E-value=0.0029  Score=48.81  Aligned_cols=26  Identities=8%  Similarity=0.037  Sum_probs=23.1

Q ss_pred             CCCeEEEEEcCCCCCchHHHHHHHHH
Q 030464           76 RRGVHWAFIGSPRAKKHVYAEMLSKL  101 (177)
Q Consensus        76 ~~~~~IlIiGpPGSGKSTlA~~LAk~  101 (177)
                      .+.++|+|+|.+|+||||+..+|...
T Consensus        23 ~~~~ki~vvG~~~~GKSsLi~~l~~~   48 (217)
T 2f7s_A           23 DYLIKLLALGDSGVGKTTFLYRYTDN   48 (217)
T ss_dssp             SEEEEEEEESCTTSSHHHHHHHHHCS
T ss_pred             ceeEEEEEECcCCCCHHHHHHHHhcC
Confidence            56789999999999999999999753

>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*

Probab=96.15  E-value=0.0035  Score=53.46  Aligned_cols=27  Identities=22%  Similarity=0.198  Sum_probs=23.9

Q ss_pred             CCCeEEEEEcCCCCCchHHHHHHHHHh
Q 030464           76 RRGVHWAFIGSPRAKKHVYAEMLSKLL  102 (177)
Q Consensus        76 ~~~~~IlIiGpPGSGKSTlA~~LAk~l  102 (177)
                      .+..+|+|+|+||+||||++..|+..+
T Consensus        77 ~~~~~I~i~G~~G~GKSTl~~~L~~~l  103 (355)
T 3p32_A           77 GNAHRVGITGVPGVGKSTAIEALGMHL  103 (355)
T ss_dssp             CCSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHHHH
Confidence            366789999999999999999998765

>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A

Probab=96.12  E-value=0.0027  Score=51.84  Aligned_cols=27  Identities=22%  Similarity=0.121  Sum_probs=23.4

Q ss_pred             cCCCeEEEEEcCCCCCchHHHHHHHHH
Q 030464           75 RRRGVHWAFIGSPRAKKHVYAEMLSKL  101 (177)
Q Consensus        75 ~~~~~~IlIiGpPGSGKSTlA~~LAk~  101 (177)
                      ..++-.++|+|+|||||||++..++..
T Consensus        27 l~~G~i~~i~G~~GsGKTtl~~~l~~~   53 (279)
T 1nlf_A           27 MVAGTVGALVSPGGAGKSMLALQLAAQ   53 (279)
T ss_dssp             EETTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred             ccCCCEEEEEcCCCCCHHHHHHHHHHH
Confidence            457778999999999999999998863

>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}

Probab=96.12  E-value=0.0031  Score=51.34  Aligned_cols=25  Identities=24%  Similarity=0.260  Sum_probs=22.2

Q ss_pred             CCeEEEEEcCCCCCchHHHHHHHHH
Q 030464           77 RGVHWAFIGSPRAKKHVYAEMLSKL  101 (177)
Q Consensus        77 ~~~~IlIiGpPGSGKSTlA~~LAk~  101 (177)
                      +.++|+|+|+||+||||+..+|...
T Consensus         2 ~~~~i~lvG~~g~GKTTL~n~l~g~   26 (271)
T 3k53_A            2 VLKTVALVGNPNVGKTTIFNALTGL   26 (271)
T ss_dssp             CCEEEEEEECSSSSHHHHHHHHHTT
T ss_pred             ceeEEEEECCCCCCHHHHHHHHhCC
Confidence            4678999999999999999999754

>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2

Probab=96.10  E-value=0.0033  Score=48.37  Aligned_cols=26  Identities=15%  Similarity=-0.003  Sum_probs=21.4

Q ss_pred             CCCeEEEEEcCCCCCchHHHHHHHHH
Q 030464           76 RRGVHWAFIGSPRAKKHVYAEMLSKL  101 (177)
Q Consensus        76 ~~~~~IlIiGpPGSGKSTlA~~LAk~  101 (177)
                      .+.++|+|+|.+|+|||++..+|...
T Consensus         5 ~~~~ki~vvG~~~~GKTsli~~l~~~   30 (214)
T 2fh5_B            5 SSQRAVLFVGLCDSGKTLLFVRLLTG   30 (214)
T ss_dssp             ---CEEEEECSTTSSHHHHHHHHHHS
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCC
Confidence            46689999999999999999999864

>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8

Probab=96.09  E-value=0.0029  Score=47.23  Aligned_cols=23  Identities=17%  Similarity=0.141  Sum_probs=20.8

Q ss_pred             eEEEEEcCCCCCchHHHHHHHHH
Q 030464           79 VHWAFIGSPRAKKHVYAEMLSKL  101 (177)
Q Consensus        79 ~~IlIiGpPGSGKSTlA~~LAk~  101 (177)
                      ++|+|+|.+|+||||+..++...
T Consensus         2 ~ki~v~G~~~~GKSsli~~l~~~   24 (190)
T 2cxx_A            2 ATIIFAGRSNVGKSTLIYRLTGK   24 (190)
T ss_dssp             CEEEEEEBTTSSHHHHHHHHHSC
T ss_pred             cEEEEECCCCCCHHHHHHHHhCc
Confidence            58999999999999999999764

>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*

Probab=96.09  E-value=0.0033  Score=48.42  Aligned_cols=25  Identities=24%  Similarity=0.364  Sum_probs=22.4

Q ss_pred             CCCeEEEEEcCCCCCchHHHHHHHH
Q 030464           76 RRGVHWAFIGSPRAKKHVYAEMLSK  100 (177)
Q Consensus        76 ~~~~~IlIiGpPGSGKSTlA~~LAk  100 (177)
                      .+..+|+|+|++|+||||+..++..
T Consensus        23 ~~~~ki~lvG~~~vGKSsLi~~l~~   47 (198)
T 1f6b_A           23 KKTGKLVFLGLDNAGKTTLLHMLKD   47 (198)
T ss_dssp             TCCEEEEEEEETTSSHHHHHHHHSC
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHhc
Confidence            4678899999999999999999964

>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}

Probab=96.09  E-value=0.0049  Score=48.24  Aligned_cols=48  Identities=10%  Similarity=0.015  Sum_probs=32.7

Q ss_pred             CCccccCccCc-ccCCCeEEEEEcCCCCCchHHHHHHHHH----hC--CCeeeCc
Q 030464           63 RSVTLPDTEGR-ERRRGVHWAFIGSPRAKKHVYAEMLSKL----LE--VPRISMS  110 (177)
Q Consensus        63 ~~~~~~~~~~~-~~~~~~~IlIiGpPGSGKSTlA~~LAk~----lg--l~~Is~~  110 (177)
                      .-.+.+|.-.. ...++-.++|.|+||+|||++|..++..    .+  +.+++..
T Consensus        14 TGi~~LD~~l~GGl~~G~l~~i~G~pG~GKT~l~l~~~~~~~~~~~~~v~~~s~E   68 (251)
T 2zts_A           14 SGIPGFDELIEGGFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLE   68 (251)
T ss_dssp             CSCTTTGGGTTTSEETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESS
T ss_pred             CCcHHHHHhhcCCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCceeeccc
Confidence            33555665443 3457778999999999999999887532    23  4466654

>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8

Probab=96.08  E-value=0.0037  Score=47.60  Aligned_cols=26  Identities=12%  Similarity=0.023  Sum_probs=22.7

Q ss_pred             CCCeEEEEEcCCCCCchHHHHHHHHH
Q 030464           76 RRGVHWAFIGSPRAKKHVYAEMLSKL  101 (177)
Q Consensus        76 ~~~~~IlIiGpPGSGKSTlA~~LAk~  101 (177)
                      ...++|+|+|.+|+||||+..+|...
T Consensus         6 ~~~~ki~v~G~~~~GKSsli~~l~~~   31 (203)
T 1zbd_A            6 DYMFKILIIGNSSVGKTSFLFRYADD   31 (203)
T ss_dssp             SEEEEEEEECSTTSSHHHHHHHHHTC
T ss_pred             ceeeEEEEECCCCCCHHHHHHHHhcC
Confidence            35689999999999999999999764

>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*

Probab=96.08  E-value=0.0041  Score=52.96  Aligned_cols=27  Identities=26%  Similarity=0.399  Sum_probs=23.7

Q ss_pred             CCCeEEEEEcCCCCCchHHHHHHHHHh
Q 030464           76 RRGVHWAFIGSPRAKKHVYAEMLSKLL  102 (177)
Q Consensus        76 ~~~~~IlIiGpPGSGKSTlA~~LAk~l  102 (177)
                      .++..+.|+|+|||||||+.+.|+..+
T Consensus        53 ~~g~~v~i~G~~GaGKSTLl~~l~g~~   79 (337)
T 2qm8_A           53 GRAIRVGITGVPGVGKSTTIDALGSLL   79 (337)
T ss_dssp             CCSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHhh
Confidence            567889999999999999999998643

>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*

Probab=96.05  E-value=0.0037  Score=48.22  Aligned_cols=26  Identities=8%  Similarity=0.093  Sum_probs=22.1

Q ss_pred             CCCeEEEEEcCCCCCchHHHHHHHHH
Q 030464           76 RRGVHWAFIGSPRAKKHVYAEMLSKL  101 (177)
Q Consensus        76 ~~~~~IlIiGpPGSGKSTlA~~LAk~  101 (177)
                      .+.++|+|+|.+|+||||+..++...
T Consensus        28 ~~~~ki~vvG~~~~GKSsLi~~l~~~   53 (204)
T 4gzl_A           28 GQAIKCVVVGDGAVGKTCLLISYTTN   53 (204)
T ss_dssp             --CEEEEEEESTTSSHHHHHHHHHHS
T ss_pred             CCeEEEEEECcCCCCHHHHHHHHHhC
Confidence            57799999999999999999998763

>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...

Probab=96.05  E-value=0.0034  Score=48.74  Aligned_cols=29  Identities=14%  Similarity=0.250  Sum_probs=23.8

Q ss_pred             ccCCCeEEEEEcCCCCCchHHHHH-HHHHh
Q 030464           74 ERRRGVHWAFIGSPRAKKHVYAEM-LSKLL  102 (177)
Q Consensus        74 ~~~~~~~IlIiGpPGSGKSTlA~~-LAk~l  102 (177)
                      .+.+.++|+|+|.+|+||||+..+ +...+
T Consensus        11 ~~~~~~ki~v~G~~~~GKSsli~~~~~~~~   40 (221)
T 3gj0_A           11 EPQVQFKLVLVGDGGTGKTTFVKRHLTGEF   40 (221)
T ss_dssp             CCCCEEEEEEEECTTSSHHHHHTTBHHHHH
T ss_pred             CcccceEEEEECCCCCCHHHHHHHHHcCCC
Confidence            345778999999999999999998 54443

>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}

Probab=96.05  E-value=0.0034  Score=47.80  Aligned_cols=25  Identities=20%  Similarity=0.175  Sum_probs=22.1

Q ss_pred             CCCeEEEEEcCCCCCchHHHHHHHH
Q 030464           76 RRGVHWAFIGSPRAKKHVYAEMLSK  100 (177)
Q Consensus        76 ~~~~~IlIiGpPGSGKSTlA~~LAk  100 (177)
                      .+.++|+|+|.+|+|||++..+|..
T Consensus        24 ~~~~ki~vvG~~~~GKSsLi~~l~~   48 (192)
T 2il1_A           24 DFKLQVIIIGSRGVGKTSLMERFTD   48 (192)
T ss_dssp             SEEEEEEEECSTTSSHHHHHHHHCC
T ss_pred             CCceEEEEECCCCCCHHHHHHHHhc
Confidence            4568999999999999999999864

>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*

Probab=96.05  E-value=0.0039  Score=49.74  Aligned_cols=28  Identities=14%  Similarity=0.163  Sum_probs=21.6

Q ss_pred             cccCCCeEEEEEcCCCCCchHHHHHHHH
Q 030464           73 RERRRGVHWAFIGSPRAKKHVYAEMLSK  100 (177)
Q Consensus        73 ~~~~~~~~IlIiGpPGSGKSTlA~~LAk  100 (177)
                      ..|.+..+|+|+|.+|+|||++..++..
T Consensus         8 ~~P~k~~KivlvGd~~VGKTsLi~r~~~   35 (216)
T 4dkx_A            8 GNPLRKFKLVFLGEQSVGKTSLITRFMY   35 (216)
T ss_dssp             -----CEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCCCcEEEEEECcCCcCHHHHHHHHHh
Confidence            3467788999999999999999999875

>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8

Probab=96.04  E-value=0.0035  Score=48.76  Aligned_cols=26  Identities=12%  Similarity=0.179  Sum_probs=22.9

Q ss_pred             CCCeEEEEEcCCCCCchHHHHHHHHH
Q 030464           76 RRGVHWAFIGSPRAKKHVYAEMLSKL  101 (177)
Q Consensus        76 ~~~~~IlIiGpPGSGKSTlA~~LAk~  101 (177)
                      .+.++|+|+|.+|+|||++..+|...
T Consensus        26 ~~~~ki~vvG~~~vGKSsLi~~l~~~   51 (205)
T 1gwn_A           26 NVKCKIVVVGDSQCGKTALLHVFAKD   51 (205)
T ss_dssp             -CEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred             ceeeEEEEECCCCCCHHHHHHHHhcC
Confidence            46789999999999999999999874

>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*

Probab=96.02  E-value=0.0032  Score=51.00  Aligned_cols=35  Identities=11%  Similarity=0.145  Sum_probs=27.3

Q ss_pred             cCccCcccCCCeEEEEEcCCCCCchHHHHHHHHHh
Q 030464           68 PDTEGRERRRGVHWAFIGSPRAKKHVYAEMLSKLL  102 (177)
Q Consensus        68 ~~~~~~~~~~~~~IlIiGpPGSGKSTlA~~LAk~l  102 (177)
                      ++.......++-.+.|+||.||||||+.+.|+-.+
T Consensus        21 L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~   55 (235)
T 3tif_A           21 LKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLD   55 (235)
T ss_dssp             EEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence            34444455677889999999999999999987543

>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A

Probab=96.02  E-value=0.0036  Score=55.66  Aligned_cols=26  Identities=15%  Similarity=0.096  Sum_probs=22.9

Q ss_pred             CCeEEEEEcCCCCCchHHHHHHHHHh
Q 030464           77 RGVHWAFIGSPRAKKHVYAEMLSKLL  102 (177)
Q Consensus        77 ~~~~IlIiGpPGSGKSTlA~~LAk~l  102 (177)
                      ++..|+|+|++||||||++..||..+
T Consensus        96 ~~~vI~lvG~~GsGKTTt~~kLA~~l  121 (433)
T 3kl4_A           96 LPFIIMLVGVQGSGKTTTAGKLAYFY  121 (433)
T ss_dssp             SSEEEEECCCTTSCHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            57788999999999999999998654

>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*

Probab=96.02  E-value=0.0036  Score=47.86  Aligned_cols=26  Identities=15%  Similarity=0.031  Sum_probs=22.9

Q ss_pred             CCCeEEEEEcCCCCCchHHHHHHHHH
Q 030464           76 RRGVHWAFIGSPRAKKHVYAEMLSKL  101 (177)
Q Consensus        76 ~~~~~IlIiGpPGSGKSTlA~~LAk~  101 (177)
                      .+.++|+|+|.+|+||||+..+|...
T Consensus         6 ~~~~ki~v~G~~~~GKSsli~~l~~~   31 (206)
T 2bcg_Y            6 DYLFKLLLIGNSGVGKSCLLLRFSDD   31 (206)
T ss_dssp             SEEEEEEEEESTTSSHHHHHHHHHHC
T ss_pred             CcceEEEEECCCCCCHHHHHHHHhcC
Confidence            45689999999999999999999753

>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*

Probab=96.01  E-value=0.0038  Score=53.88  Aligned_cols=33  Identities=12%  Similarity=0.045  Sum_probs=26.8

Q ss_pred             CCeEEEEEcCCCCCchHHHHHHHHHh--CCCeeeC
Q 030464           77 RGVHWAFIGSPRAKKHVYAEMLSKLL--EVPRISM  109 (177)
Q Consensus        77 ~~~~IlIiGpPGSGKSTlA~~LAk~l--gl~~Is~  109 (177)
                      ++..++|.||||+|||++|.+++...  .+.++++
T Consensus       122 ~gsviLI~GpPGsGKTtLAlqlA~~~G~~VlyIs~  156 (331)
T 2vhj_A          122 ASGMVIVTGKGNSGKTPLVHALGEALGGKDKYATV  156 (331)
T ss_dssp             ESEEEEEECSCSSSHHHHHHHHHHHHHTTSCCEEE
T ss_pred             CCcEEEEEcCCCCCHHHHHHHHHHhCCCCEEEEEe
Confidence            44567899999999999999998754  3567777

>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}

Probab=96.01  E-value=0.0046  Score=53.59  Aligned_cols=28  Identities=18%  Similarity=0.127  Sum_probs=24.4

Q ss_pred             cCCCeEEEEEcCCCCCchHHHHHHHHHh
Q 030464           75 RRRGVHWAFIGSPRAKKHVYAEMLSKLL  102 (177)
Q Consensus        75 ~~~~~~IlIiGpPGSGKSTlA~~LAk~l  102 (177)
                      ..++-.|.|+|+.||||||+++.|+..+
T Consensus       154 ~~~g~vi~lvG~nGsGKTTll~~Lag~l  181 (359)
T 2og2_A          154 FRKPAVIMIVGVNGGGKTTSLGKLAHRL  181 (359)
T ss_dssp             SSSSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             cCCCeEEEEEcCCCChHHHHHHHHHhhc
Confidence            3467789999999999999999998865

>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}

Probab=96.01  E-value=0.0042  Score=55.47  Aligned_cols=26  Identities=12%  Similarity=0.192  Sum_probs=23.2

Q ss_pred             CCeEEEEEcCCCCCchHHHHHHHHHh
Q 030464           77 RGVHWAFIGSPRAKKHVYAEMLSKLL  102 (177)
Q Consensus        77 ~~~~IlIiGpPGSGKSTlA~~LAk~l  102 (177)
                      ++..|+|+|+||+||||++..||..+
T Consensus        99 ~p~vIlivG~~G~GKTTt~~kLA~~l  124 (443)
T 3dm5_A           99 KPTILLMVGIQGSGKTTTVAKLARYF  124 (443)
T ss_dssp             SSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCeEEEEECcCCCCHHHHHHHHHHHH
Confidence            57889999999999999999998754

>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}

Probab=95.98  E-value=0.003  Score=48.61  Aligned_cols=25  Identities=12%  Similarity=0.098  Sum_probs=21.5

Q ss_pred             CCCeEEEEEcCCCCCchHHHHHHHH
Q 030464           76 RRGVHWAFIGSPRAKKHVYAEMLSK  100 (177)
Q Consensus        76 ~~~~~IlIiGpPGSGKSTlA~~LAk  100 (177)
                      ...++|+|+|.+|+|||++..++..
T Consensus        21 ~~~~ki~vvG~~~vGKSsLi~~l~~   45 (195)
T 3cbq_A           21 DGIFKVMLVGESGVGKSTLAGTFGG   45 (195)
T ss_dssp             -CEEEEEEECSTTSSHHHHHHHTCC
T ss_pred             CcEEEEEEECCCCCCHHHHHHHHHh
Confidence            3568999999999999999999853

>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}

Probab=95.96  E-value=0.004  Score=49.64  Aligned_cols=26  Identities=12%  Similarity=-0.075  Sum_probs=22.1

Q ss_pred             CCCeEEEEEcCCCCCchHHHHHHHHH
Q 030464           76 RRGVHWAFIGSPRAKKHVYAEMLSKL  101 (177)
Q Consensus        76 ~~~~~IlIiGpPGSGKSTlA~~LAk~  101 (177)
                      .++-.+.|+||.||||||+.+.|+..
T Consensus        20 ~~Ge~~~liG~nGsGKSTLl~~l~Gl   45 (208)
T 3b85_A           20 DTNTIVFGLGPAGSGKTYLAMAKAVQ   45 (208)
T ss_dssp             HHCSEEEEECCTTSSTTHHHHHHHHH
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhcC
Confidence            35567899999999999999998764

>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}

Probab=95.95  E-value=0.005  Score=52.65  Aligned_cols=26  Identities=27%  Similarity=0.451  Sum_probs=22.9

Q ss_pred             CCeEEEEEcCCCCCchHHHHHHHHHh
Q 030464           77 RGVHWAFIGSPRAKKHVYAEMLSKLL  102 (177)
Q Consensus        77 ~~~~IlIiGpPGSGKSTlA~~LAk~l  102 (177)
                      ....|.|+|+||+||||+...|...+
T Consensus        73 ~~~~v~lvG~pgaGKSTLln~L~~~~   98 (349)
T 2www_A           73 LAFRVGLSGPPGAGKSTFIEYFGKML   98 (349)
T ss_dssp             SCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CceEEEEEcCCCCCHHHHHHHHHHHh
Confidence            46789999999999999999998743

>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}

Probab=95.94  E-value=0.0014  Score=60.08  Aligned_cols=32  Identities=19%  Similarity=0.339  Sum_probs=26.2

Q ss_pred             CCeEEEEEcCCCCCchHHHHHHHHHhCCCeee
Q 030464           77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRIS  108 (177)
Q Consensus        77 ~~~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is  108 (177)
                      ....|+|+||||+|||++|+.+++..+...+.
T Consensus       326 ~~~~vLL~GppGtGKT~LAr~la~~~~r~~~~  357 (595)
T 3f9v_A          326 GDIHILIIGDPGTAKSQMLQFISRVAPRAVYT  357 (595)
T ss_dssp             CSCCEEEEESSCCTHHHHHHSSSTTCSCEECC
T ss_pred             CCcceEEECCCchHHHHHHHHHHHhCCCceec
Confidence            33489999999999999999999987654433

>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}

Probab=95.94  E-value=0.002  Score=50.08  Aligned_cols=24  Identities=13%  Similarity=0.282  Sum_probs=21.6

Q ss_pred             eEEEEEcCCCCCchHHHHHHHHHh
Q 030464           79 VHWAFIGSPRAKKHVYAEMLSKLL  102 (177)
Q Consensus        79 ~~IlIiGpPGSGKSTlA~~LAk~l  102 (177)
                      ..+.|+|++||||||+++.|...+
T Consensus         3 ~~v~IvG~SGsGKSTL~~~L~~~~   26 (171)
T 2f1r_A            3 LILSIVGTSDSGKTTLITRMMPIL   26 (171)
T ss_dssp             CEEEEEESCHHHHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHh
Confidence            468899999999999999998876

>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*

Probab=95.94  E-value=0.0026  Score=47.48  Aligned_cols=26  Identities=15%  Similarity=0.005  Sum_probs=12.2

Q ss_pred             CCCeEEEEEcCCCCCchHHHHHHHHH
Q 030464           76 RRGVHWAFIGSPRAKKHVYAEMLSKL  101 (177)
Q Consensus        76 ~~~~~IlIiGpPGSGKSTlA~~LAk~  101 (177)
                      ...++|+|+|.+|+|||++..++...
T Consensus         6 ~~~~ki~v~G~~~~GKssl~~~l~~~   31 (183)
T 2fu5_C            6 DYLFKLLLIGDSGVGKTCVLFRFSED   31 (183)
T ss_dssp             SEEEEEEEECCCCC------------
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHhC
Confidence            35689999999999999999998653

>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}

Probab=95.93  E-value=0.0036  Score=50.70  Aligned_cols=34  Identities=15%  Similarity=-0.004  Sum_probs=26.8

Q ss_pred             cCccCcccCCCeEEEEEcCCCCCchHHHHHHHHH
Q 030464           68 PDTEGRERRRGVHWAFIGSPRAKKHVYAEMLSKL  101 (177)
Q Consensus        68 ~~~~~~~~~~~~~IlIiGpPGSGKSTlA~~LAk~  101 (177)
                      ++.......++-.+.|+||.||||||+.+.|+..
T Consensus        21 l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl   54 (237)
T 2cbz_A           21 LNGITFSIPEGALVAVVGQVGCGKSSLLSALLAE   54 (237)
T ss_dssp             EEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTC
T ss_pred             eeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcC
Confidence            3344444567788999999999999999998764

>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A

Probab=95.93  E-value=0.0033  Score=50.44  Aligned_cols=33  Identities=18%  Similarity=0.175  Sum_probs=25.8

Q ss_pred             ccCcccCCCeEEEEEcCCCCCchHHHHHHHHHh
Q 030464           70 TEGRERRRGVHWAFIGSPRAKKHVYAEMLSKLL  102 (177)
Q Consensus        70 ~~~~~~~~~~~IlIiGpPGSGKSTlA~~LAk~l  102 (177)
                      .......++-.+.|+||.||||||+.+.|+..+
T Consensus        22 ~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~   54 (224)
T 2pcj_A           22 GISLSVKKGEFVSIIGASGSGKSTLLYILGLLD   54 (224)
T ss_dssp             EEEEEEETTCEEEEEECTTSCHHHHHHHHTTSS
T ss_pred             eeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            333444577789999999999999999987543

>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*

Probab=95.92  E-value=0.0039  Score=51.99  Aligned_cols=37  Identities=11%  Similarity=-0.144  Sum_probs=27.4

Q ss_pred             ccccCccC-cccCCCeEEEEEcCCCCCchHHHHHHHHH
Q 030464           65 VTLPDTEG-RERRRGVHWAFIGSPRAKKHVYAEMLSKL  101 (177)
Q Consensus        65 ~~~~~~~~-~~~~~~~~IlIiGpPGSGKSTlA~~LAk~  101 (177)
                      .+.++.-. ....++-.++|.|+||+|||++|..++..
T Consensus        84 ~~~LD~~l~GGl~~g~i~~i~G~~gsGKT~la~~la~~  121 (322)
T 2i1q_A           84 SSELDSVLGGGLESQSVTEFAGVFGSGKTQIMHQSCVN  121 (322)
T ss_dssp             CHHHHHHTTSSEETTEEEEEEESTTSSHHHHHHHHHHH
T ss_pred             ChhHHHhcCCCccCCeEEEEECCCCCCHHHHHHHHHHH
Confidence            34444433 23346778999999999999999999864

>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11

Probab=95.92  E-value=0.0042  Score=53.15  Aligned_cols=39  Identities=15%  Similarity=0.069  Sum_probs=29.9

Q ss_pred             CccccCcc-CcccCCCeEEEEEcCCCCCchHHHHHHHHHh
Q 030464           64 SVTLPDTE-GRERRRGVHWAFIGSPRAKKHVYAEMLSKLL  102 (177)
Q Consensus        64 ~~~~~~~~-~~~~~~~~~IlIiGpPGSGKSTlA~~LAk~l  102 (177)
                      -.+.++.- +....++-.+.|+|+|||||||++..++...
T Consensus       116 G~~~LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~  155 (349)
T 1pzn_A          116 GSKSLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMV  155 (349)
T ss_dssp             SCHHHHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred             CCHHHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence            34445444 2344678889999999999999999998875

>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20

Probab=95.91  E-value=0.0054  Score=50.22  Aligned_cols=32  Identities=13%  Similarity=0.067  Sum_probs=25.5

Q ss_pred             eEEEEEcCCCCCchHHHHHHHHHhCC--CeeeCc
Q 030464           79 VHWAFIGSPRAKKHVYAEMLSKLLEV--PRISMS  110 (177)
Q Consensus        79 ~~IlIiGpPGSGKSTlA~~LAk~lgl--~~Is~~  110 (177)
                      ..++|.|++|+|||++++.+++..+.  .+++..
T Consensus        31 ~~v~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~   64 (357)
T 2fna_A           31 PITLVLGLRRTGKSSIIKIGINELNLPYIYLDLR   64 (357)
T ss_dssp             SEEEEEESTTSSHHHHHHHHHHHHTCCEEEEEGG
T ss_pred             CcEEEECCCCCCHHHHHHHHHHhcCCCEEEEEch
Confidence            37899999999999999999988654  344443

>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}

Probab=95.90  E-value=0.0034  Score=47.27  Aligned_cols=25  Identities=20%  Similarity=0.139  Sum_probs=22.2

Q ss_pred             CCCeEEEEEcCCCCCchHHHHHHHH
Q 030464           76 RRGVHWAFIGSPRAKKHVYAEMLSK  100 (177)
Q Consensus        76 ~~~~~IlIiGpPGSGKSTlA~~LAk  100 (177)
                      .+.++|+|+|.+|+|||++..++..
T Consensus        20 ~~~~~i~v~G~~~~GKssli~~l~~   44 (189)
T 2x77_A           20 DRKIRVLMLGLDNAGKTSILYRLHL   44 (189)
T ss_dssp             TSCEEEEEEEETTSSHHHHHHHTCC
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHc
Confidence            4678999999999999999999853

>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}

Probab=95.90  E-value=0.0051  Score=47.24  Aligned_cols=26  Identities=8%  Similarity=0.020  Sum_probs=22.9

Q ss_pred             CCCeEEEEEcCCCCCchHHHHHHHHH
Q 030464           76 RRGVHWAFIGSPRAKKHVYAEMLSKL  101 (177)
Q Consensus        76 ~~~~~IlIiGpPGSGKSTlA~~LAk~  101 (177)
                      .+.++|+|+|.+|+|||++..++...
T Consensus         7 ~~~~ki~i~G~~~~GKTsli~~l~~~   32 (212)
T 2j0v_A            7 SKFIKCVTVGDGAVGKTCMLICYTSN   32 (212)
T ss_dssp             CCEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred             CceEEEEEECCCCCCHHHHHHHHhcC
Confidence            36689999999999999999999764

>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*

Probab=95.89  E-value=0.0054  Score=52.98  Aligned_cols=27  Identities=11%  Similarity=0.058  Sum_probs=23.3

Q ss_pred             CCCeEEEEEcCCCCCchHHHHHHHHHh
Q 030464           76 RRGVHWAFIGSPRAKKHVYAEMLSKLL  102 (177)
Q Consensus        76 ~~~~~IlIiGpPGSGKSTlA~~LAk~l  102 (177)
                      .++-.|+|+||+||||||+.+.|+..+
T Consensus       134 ~~g~~i~ivG~~GsGKTTll~~l~~~~  160 (372)
T 2ewv_A          134 RKMGLILVTGPTGSGKSTTIASMIDYI  160 (372)
T ss_dssp             SSSEEEEEECSSSSSHHHHHHHHHHHH
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence            355679999999999999999998765

>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*

Probab=95.87  E-value=0.0053  Score=47.87  Aligned_cols=26  Identities=15%  Similarity=0.219  Sum_probs=22.1

Q ss_pred             CCCeEEEEEcCCCCCchHHHHHHHHH
Q 030464           76 RRGVHWAFIGSPRAKKHVYAEMLSKL  101 (177)
Q Consensus        76 ~~~~~IlIiGpPGSGKSTlA~~LAk~  101 (177)
                      .+.++|+|+|.+|+|||++..++...
T Consensus        25 ~~~~ki~vvG~~~vGKSsL~~~l~~~   50 (214)
T 3q3j_B           25 VARCKLVLVGDVQCGKTAMLQVLAKD   50 (214)
T ss_dssp             --CEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             cceEEEEEECcCCCCHHHHHHHHhcC
Confidence            46789999999999999999999764

>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*

Probab=95.87  E-value=0.006  Score=49.49  Aligned_cols=27  Identities=19%  Similarity=-0.103  Sum_probs=23.0

Q ss_pred             CCCeEEEEEcCCCCCchHHHHHHHHHh
Q 030464           76 RRGVHWAFIGSPRAKKHVYAEMLSKLL  102 (177)
Q Consensus        76 ~~~~~IlIiGpPGSGKSTlA~~LAk~l  102 (177)
                      .++..++++|+||+||||.+..++..+
T Consensus        10 ~~G~i~litG~mGsGKTT~ll~~~~r~   36 (223)
T 2b8t_A           10 KIGWIEFITGPMFAGKTAELIRRLHRL   36 (223)
T ss_dssp             -CCEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred             CCcEEEEEECCCCCcHHHHHHHHHHHH
Confidence            456789999999999999999888776

>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}

Probab=95.86  E-value=0.0047  Score=51.08  Aligned_cols=25  Identities=16%  Similarity=0.137  Sum_probs=22.2

Q ss_pred             CeEEEEEcCCCCCchHHHHHHHHHh
Q 030464           78 GVHWAFIGSPRAKKHVYAEMLSKLL  102 (177)
Q Consensus        78 ~~~IlIiGpPGSGKSTlA~~LAk~l  102 (177)
                      ..++.|+|++|+||||+.+.|+...
T Consensus         2 ~f~v~lvG~nGaGKSTLln~L~g~~   26 (270)
T 3sop_A            2 DFNIMVVGQSGLGKSTLVNTLFKSQ   26 (270)
T ss_dssp             EEEEEEEESSSSSHHHHHHHHHHHH
T ss_pred             eeEEEEECCCCCCHHHHHHHHhCCC
Confidence            3578999999999999999998765

>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}

Probab=95.86  E-value=0.0054  Score=48.13  Aligned_cols=26  Identities=15%  Similarity=0.310  Sum_probs=22.9

Q ss_pred             CCCeEEEEEcCCCCCchHHHHHHHHH
Q 030464           76 RRGVHWAFIGSPRAKKHVYAEMLSKL  101 (177)
Q Consensus        76 ~~~~~IlIiGpPGSGKSTlA~~LAk~  101 (177)
                      .+.++|+|+|.+|+|||++..+|...
T Consensus        27 ~~~~kI~vvG~~~vGKSsLin~l~~~   52 (228)
T 2qu8_A           27 PHKKTIILSGAPNVGKSSFMNIVSRA   52 (228)
T ss_dssp             TTSEEEEEECSTTSSHHHHHHHHTTT
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCC
Confidence            46789999999999999999998653

>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12

Probab=95.84  E-value=0.0044  Score=50.24  Aligned_cols=35  Identities=17%  Similarity=0.166  Sum_probs=27.3

Q ss_pred             cCccCcccCCCeEEEEEcCCCCCchHHHHHHHHHh
Q 030464           68 PDTEGRERRRGVHWAFIGSPRAKKHVYAEMLSKLL  102 (177)
Q Consensus        68 ~~~~~~~~~~~~~IlIiGpPGSGKSTlA~~LAk~l  102 (177)
                      ++.......++-.+.|+||.||||||+.+.|+..+
T Consensus        18 l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~   52 (243)
T 1mv5_A           18 LRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFY   52 (243)
T ss_dssp             EEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            33334445677889999999999999999997654

>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B

Probab=95.84  E-value=0.0046  Score=54.75  Aligned_cols=26  Identities=15%  Similarity=0.204  Sum_probs=22.8

Q ss_pred             CCeEEEEEcCCCCCchHHHHHHHHHh
Q 030464           77 RGVHWAFIGSPRAKKHVYAEMLSKLL  102 (177)
Q Consensus        77 ~~~~IlIiGpPGSGKSTlA~~LAk~l  102 (177)
                      ++.+|+|+|+||+||||++..|+..+
T Consensus        98 ~~~vI~ivG~~GvGKTTla~~La~~l  123 (432)
T 2v3c_C           98 KQNVILLVGIQGSGKTTTAAKLARYI  123 (432)
T ss_dssp             SCCCEEEECCSSSSTTHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            45689999999999999999998865

>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12

Probab=95.83  E-value=0.0046  Score=50.38  Aligned_cols=26  Identities=23%  Similarity=0.437  Sum_probs=22.1

Q ss_pred             CCCeEEEEEcCCCCCchHHHHHHHHHh
Q 030464           76 RRGVHWAFIGSPRAKKHVYAEMLSKLL  102 (177)
Q Consensus        76 ~~~~~IlIiGpPGSGKSTlA~~LAk~l  102 (177)
                      .+ -.+.|+||.||||||+.+.|+-.+
T Consensus        23 ~~-e~~~liG~nGsGKSTLl~~l~Gl~   48 (240)
T 2onk_A           23 GR-DYCVLLGPTGAGKSVFLELIAGIV   48 (240)
T ss_dssp             CS-SEEEEECCTTSSHHHHHHHHHTSS
T ss_pred             CC-EEEEEECCCCCCHHHHHHHHhCCC
Confidence            45 678899999999999999998654

>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8

Probab=95.83  E-value=0.004  Score=47.03  Aligned_cols=26  Identities=8%  Similarity=-0.017  Sum_probs=23.1

Q ss_pred             CCCeEEEEEcCCCCCchHHHHHHHHH
Q 030464           76 RRGVHWAFIGSPRAKKHVYAEMLSKL  101 (177)
Q Consensus        76 ~~~~~IlIiGpPGSGKSTlA~~LAk~  101 (177)
                      .+.++|+|+|.+|+|||++..+|...
T Consensus        16 ~~~~ki~v~G~~~~GKssli~~l~~~   41 (194)
T 2atx_A           16 ALMLKCVVVGDGAVGKTCLLMSYAND   41 (194)
T ss_dssp             EEEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred             CceEEEEEECCCCCCHHHHHHHHhcC
Confidence            35689999999999999999999864

>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A

Probab=95.82  E-value=0.0079  Score=54.59  Aligned_cols=28  Identities=11%  Similarity=0.100  Sum_probs=24.4

Q ss_pred             cCCCeEEEEEcCCCCCchHHHHHHHHHh
Q 030464           75 RRRGVHWAFIGSPRAKKHVYAEMLSKLL  102 (177)
Q Consensus        75 ~~~~~~IlIiGpPGSGKSTlA~~LAk~l  102 (177)
                      ..++-.|.|+|+.||||||+++.|+..+
T Consensus       290 i~~GeVI~LVGpNGSGKTTLl~~LAgll  317 (503)
T 2yhs_A          290 GKAPFVILMVGVNGVGKTTTIGKLARQF  317 (503)
T ss_dssp             SCTTEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             ccCCeEEEEECCCcccHHHHHHHHHHHh
Confidence            3567789999999999999999998765

>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A

Probab=95.80  E-value=0.0053  Score=49.21  Aligned_cols=26  Identities=12%  Similarity=0.208  Sum_probs=22.6

Q ss_pred             CCCeEEEEEcCCCCCchHHHHHHHHH
Q 030464           76 RRGVHWAFIGSPRAKKHVYAEMLSKL  101 (177)
Q Consensus        76 ~~~~~IlIiGpPGSGKSTlA~~LAk~  101 (177)
                      .+..+|+|+|.||+||||+..+|...
T Consensus        20 ~~~~~I~lvG~~g~GKStl~n~l~~~   45 (260)
T 2xtp_A           20 RSELRIILVGKTGTGKSAAGNSILRK   45 (260)
T ss_dssp             -CCEEEEEEECTTSCHHHHHHHHHTS
T ss_pred             CCceEEEEECCCCCCHHHHHHHHhCC
Confidence            46789999999999999999999754

>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12

Probab=95.79  E-value=0.0044  Score=50.97  Aligned_cols=32  Identities=22%  Similarity=0.249  Sum_probs=25.7

Q ss_pred             cCcccCCCeEEEEEcCCCCCchHHHHHHHHHh
Q 030464           71 EGRERRRGVHWAFIGSPRAKKHVYAEMLSKLL  102 (177)
Q Consensus        71 ~~~~~~~~~~IlIiGpPGSGKSTlA~~LAk~l  102 (177)
                      ......++-.+.|+||.||||||+.+.|+..+
T Consensus        25 vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~   56 (262)
T 1b0u_A           25 VSLQARAGDVISIIGSSGSGKSTFLRCINFLE   56 (262)
T ss_dssp             EEEEECTTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             eEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            33444677789999999999999999997644

>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*

Probab=95.78  E-value=0.0064  Score=46.59  Aligned_cols=25  Identities=16%  Similarity=0.215  Sum_probs=22.2

Q ss_pred             CCeEEEEEcCCCCCchHHHHHHHHH
Q 030464           77 RGVHWAFIGSPRAKKHVYAEMLSKL  101 (177)
Q Consensus        77 ~~~~IlIiGpPGSGKSTlA~~LAk~  101 (177)
                      ...+|+|+|.||+|||++..++...
T Consensus         5 ~~~kv~lvG~~~vGKSsL~~~~~~~   29 (192)
T 2cjw_A            5 TYYRVVLIGEQGVGKSTLANIFAGV   29 (192)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             ceEEEEEECCCCCCHHHHHHHHhcC
Confidence            4578999999999999999999854

>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}

Probab=95.78  E-value=0.0042  Score=56.71  Aligned_cols=28  Identities=25%  Similarity=0.456  Sum_probs=24.4

Q ss_pred             CCeEEEEEcCCCCCchHHHHHHHHHhCC
Q 030464           77 RGVHWAFIGSPRAKKHVYAEMLSKLLEV  104 (177)
Q Consensus        77 ~~~~IlIiGpPGSGKSTlA~~LAk~lgl  104 (177)
                      .+..++|+||||+||||+|+.|+..+..
T Consensus        59 ~g~~vll~Gp~GtGKTtlar~ia~~l~~   86 (604)
T 3k1j_A           59 QKRHVLLIGEPGTGKSMLGQAMAELLPT   86 (604)
T ss_dssp             TTCCEEEECCTTSSHHHHHHHHHHTSCC
T ss_pred             CCCEEEEEeCCCCCHHHHHHHHhccCCc
Confidence            4468999999999999999999997753

>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A

Probab=95.77  E-value=0.0086  Score=50.82  Aligned_cols=27  Identities=11%  Similarity=0.132  Sum_probs=23.5

Q ss_pred             CCCeEEEEEcCCCCCchHHHHHHHHHh
Q 030464           76 RRGVHWAFIGSPRAKKHVYAEMLSKLL  102 (177)
Q Consensus        76 ~~~~~IlIiGpPGSGKSTlA~~LAk~l  102 (177)
                      .++..|.|+|++|+||||++..||..+
T Consensus       103 ~~~~vI~ivG~~G~GKTT~~~~LA~~l  129 (320)
T 1zu4_A          103 NRLNIFMLVGVNGTGKTTSLAKMANYY  129 (320)
T ss_dssp             TSCEEEEEESSTTSSHHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            466788899999999999999998765

>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*

Probab=95.76  E-value=0.0055  Score=49.95  Aligned_cols=32  Identities=19%  Similarity=0.164  Sum_probs=25.8

Q ss_pred             ccCcccCCCeEEEEEcCCCCCchHHHHHHHHH
Q 030464           70 TEGRERRRGVHWAFIGSPRAKKHVYAEMLSKL  101 (177)
Q Consensus        70 ~~~~~~~~~~~IlIiGpPGSGKSTlA~~LAk~  101 (177)
                      .......++-.+.|+|+.||||||+.+.|+..
T Consensus        21 ~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl   52 (250)
T 2d2e_A           21 GVNLVVPKGEVHALMGPNGAGKSTLGKILAGD   52 (250)
T ss_dssp             EEEEEEETTCEEEEECSTTSSHHHHHHHHHTC
T ss_pred             ceEEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence            33344457778999999999999999999864

>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*

Probab=95.75  E-value=0.0035  Score=51.32  Aligned_cols=35  Identities=17%  Similarity=0.189  Sum_probs=27.0

Q ss_pred             cCccCcccCCCeEEEEEcCCCCCchHHHHHHHHHh
Q 030464           68 PDTEGRERRRGVHWAFIGSPRAKKHVYAEMLSKLL  102 (177)
Q Consensus        68 ~~~~~~~~~~~~~IlIiGpPGSGKSTlA~~LAk~l  102 (177)
                      ++.......++-.+.|+||.||||||+.+.|+..+
T Consensus        23 l~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~   57 (257)
T 1g6h_A           23 LDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFL   57 (257)
T ss_dssp             EEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            33344445677789999999999999999987643

>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A

Probab=95.74  E-value=0.005  Score=50.27  Aligned_cols=25  Identities=24%  Similarity=0.238  Sum_probs=22.6

Q ss_pred             CCCeEEEEEcCCCCCchHHHHHHHH
Q 030464           76 RRGVHWAFIGSPRAKKHVYAEMLSK  100 (177)
Q Consensus        76 ~~~~~IlIiGpPGSGKSTlA~~LAk  100 (177)
                      .+.++|+|+|.||+||||+..+|..
T Consensus         3 ~~~~kI~lvG~~nvGKTsL~n~l~g   27 (258)
T 3a1s_A            3 LHMVKVALAGCPNVGKTSLFNALTG   27 (258)
T ss_dssp             CEEEEEEEECCTTSSHHHHHHHHHT
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHC
Confidence            4668999999999999999999976

>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}

Probab=95.73  E-value=0.0045  Score=51.57  Aligned_cols=35  Identities=17%  Similarity=0.167  Sum_probs=27.2

Q ss_pred             cCccCcccCCCeEEEEEcCCCCCchHHHHHHHHHh
Q 030464           68 PDTEGRERRRGVHWAFIGSPRAKKHVYAEMLSKLL  102 (177)
Q Consensus        68 ~~~~~~~~~~~~~IlIiGpPGSGKSTlA~~LAk~l  102 (177)
                      ++.......++-.+.|+||.||||||+.+.|+-.+
T Consensus        24 L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~   58 (275)
T 3gfo_A           24 LKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGIL   58 (275)
T ss_dssp             EEEEEEEEETTSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCC
Confidence            33444445677889999999999999999987644

>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*

Probab=95.73  E-value=0.0047  Score=50.37  Aligned_cols=35  Identities=11%  Similarity=0.259  Sum_probs=27.1

Q ss_pred             cCccCcccCCCeEEEEEcCCCCCchHHHHHHHHHh
Q 030464           68 PDTEGRERRRGVHWAFIGSPRAKKHVYAEMLSKLL  102 (177)
Q Consensus        68 ~~~~~~~~~~~~~IlIiGpPGSGKSTlA~~LAk~l  102 (177)
                      ++.-.....++-.+.|+||.||||||+.+.|+..+
T Consensus        25 l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~   59 (247)
T 2ff7_A           25 LDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFY   59 (247)
T ss_dssp             EEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             eeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            33334445677789999999999999999987654

>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*

Probab=95.73  E-value=0.0049  Score=51.02  Aligned_cols=35  Identities=20%  Similarity=0.131  Sum_probs=27.2

Q ss_pred             cCccCcccCCCeEEEEEcCCCCCchHHHHHHHHHh
Q 030464           68 PDTEGRERRRGVHWAFIGSPRAKKHVYAEMLSKLL  102 (177)
Q Consensus        68 ~~~~~~~~~~~~~IlIiGpPGSGKSTlA~~LAk~l  102 (177)
                      ++.......++-.+.|+||.||||||+.+.|+..+
T Consensus        35 l~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~   69 (271)
T 2ixe_A           35 LQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLY   69 (271)
T ss_dssp             EEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             eEeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            33334445677789999999999999999997654

>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}

Probab=95.71  E-value=0.0048  Score=50.97  Aligned_cols=35  Identities=23%  Similarity=0.203  Sum_probs=26.9

Q ss_pred             cCccCcccCCCeEEEEEcCCCCCchHHHHHHHHHh
Q 030464           68 PDTEGRERRRGVHWAFIGSPRAKKHVYAEMLSKLL  102 (177)
Q Consensus        68 ~~~~~~~~~~~~~IlIiGpPGSGKSTlA~~LAk~l  102 (177)
                      ++.......++-.+.|+||.||||||+.+.|+-.+
T Consensus        27 L~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~   61 (266)
T 4g1u_C           27 INDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYL   61 (266)
T ss_dssp             EEEEEEEEETTCEEEEECCTTSCHHHHHHHHTSSS
T ss_pred             EEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence            33344445677789999999999999999987643

>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}

Probab=95.71  E-value=0.0065  Score=52.64  Aligned_cols=49  Identities=14%  Similarity=-0.007  Sum_probs=34.3

Q ss_pred             CccccCccCc--ccCCCeEEEEEcCCCCCchHHHHHHHHHh---C--CCeeeCchh
Q 030464           64 SVTLPDTEGR--ERRRGVHWAFIGSPRAKKHVYAEMLSKLL---E--VPRISMSSI  112 (177)
Q Consensus        64 ~~~~~~~~~~--~~~~~~~IlIiGpPGSGKSTlA~~LAk~l---g--l~~Is~~dL  112 (177)
                      -.+.++.-..  ...++-.++|.|||||||||+|..++...   +  +.+|+..+.
T Consensus        45 G~~~LD~~Lg~GGi~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~s  100 (356)
T 3hr8_A           45 GSLAIDIATGVGGYPRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEHA  100 (356)
T ss_dssp             SCHHHHHHTSSSSEETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCC
T ss_pred             CCHHHHHHhccCCccCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEecccc
Confidence            3455555332  34577789999999999999999998763   2  446766543

>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}

Probab=95.71  E-value=0.005  Score=50.58  Aligned_cols=35  Identities=17%  Similarity=0.198  Sum_probs=27.3

Q ss_pred             cCccCcccCCCeEEEEEcCCCCCchHHHHHHHHHh
Q 030464           68 PDTEGRERRRGVHWAFIGSPRAKKHVYAEMLSKLL  102 (177)
Q Consensus        68 ~~~~~~~~~~~~~IlIiGpPGSGKSTlA~~LAk~l  102 (177)
                      ++.......++-.+.|+||.||||||+.+.|+..+
T Consensus        36 l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~   70 (260)
T 2ghi_A           36 LKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFY   70 (260)
T ss_dssp             EEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             eEeeEEEECCCCEEEEECCCCCCHHHHHHHHhccC
Confidence            33334445677889999999999999999997654

>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A

Probab=95.71  E-value=0.0061  Score=50.28  Aligned_cols=31  Identities=16%  Similarity=0.153  Sum_probs=25.4

Q ss_pred             cCcccCCCeEEEEEcCCCCCchHHHHHHHHH
Q 030464           71 EGRERRRGVHWAFIGSPRAKKHVYAEMLSKL  101 (177)
Q Consensus        71 ~~~~~~~~~~IlIiGpPGSGKSTlA~~LAk~  101 (177)
                      ......++-.+.|+||.||||||+.+.|+..
T Consensus        39 vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl   69 (267)
T 2zu0_C           39 LSLDVHPGEVHAIMGPNGSGKSTLSATLAGR   69 (267)
T ss_dssp             EEEEECTTCEEEEECCTTSSHHHHHHHHHTC
T ss_pred             eEEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence            3344467778999999999999999999874

>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}

Probab=95.71  E-value=0.008  Score=49.29  Aligned_cols=34  Identities=9%  Similarity=-0.091  Sum_probs=25.8

Q ss_pred             CCeEEEEEcCCCCCchHHHHHHHHHh---CCC--eeeCc
Q 030464           77 RGVHWAFIGSPRAKKHVYAEMLSKLL---EVP--RISMS  110 (177)
Q Consensus        77 ~~~~IlIiGpPGSGKSTlA~~LAk~l---gl~--~Is~~  110 (177)
                      ..++|++.|+||+||||++-.++..+   |..  +++++
T Consensus         5 g~l~I~~~~kgGvGKTt~a~~la~~l~~~G~~V~v~d~D   43 (228)
T 2r8r_A            5 GRLKVFLGAAPGVGKTYAMLQAAHAQLRQGVRVMAGVVE   43 (228)
T ss_dssp             CCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred             ceEEEEEECCCCCcHHHHHHHHHHHHHHCCCCEEEEEeC
Confidence            35789999999999999988887653   543  44554

>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10

Probab=95.70  E-value=0.0071  Score=51.33  Aligned_cols=27  Identities=26%  Similarity=0.429  Sum_probs=23.7

Q ss_pred             CCCeEEEEEcCCCCCchHHHHHHHHHh
Q 030464           76 RRGVHWAFIGSPRAKKHVYAEMLSKLL  102 (177)
Q Consensus        76 ~~~~~IlIiGpPGSGKSTlA~~LAk~l  102 (177)
                      .++.+|.|+|+||+||||++..|+..+
T Consensus        54 ~~~~~i~i~G~~g~GKSTl~~~l~~~~   80 (341)
T 2p67_A           54 GNTLRLGVTGTPGAGKSTFLEAFGMLL   80 (341)
T ss_dssp             SCSEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred             CCCEEEEEEcCCCCCHHHHHHHHHHHH
Confidence            467889999999999999999998654

>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*

Probab=95.69  E-value=0.0051  Score=50.84  Aligned_cols=31  Identities=23%  Similarity=0.245  Sum_probs=25.2

Q ss_pred             CcccCCCeEEEEEcCCCCCchHHHHHHHHHh
Q 030464           72 GRERRRGVHWAFIGSPRAKKHVYAEMLSKLL  102 (177)
Q Consensus        72 ~~~~~~~~~IlIiGpPGSGKSTlA~~LAk~l  102 (177)
                      .....++-.+.|+||.||||||+.+.|+..+
T Consensus        44 sl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~   74 (263)
T 2olj_A           44 NVHIREGEVVVVIGPSGSGKSTFLRCLNLLE   74 (263)
T ss_dssp             EEEECTTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEcCCCEEEEEcCCCCcHHHHHHHHHcCC
Confidence            3344577789999999999999999997654

>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}

Probab=95.68  E-value=0.021  Score=59.40  Aligned_cols=78  Identities=9%  Similarity=0.028  Sum_probs=51.2

Q ss_pred             ccCCCeEEEEEcCCCCCchHHHHHHHHHh-----CCCeeeCchhhhhccCCCCchHHHHHHHHHcC---------CcchH
Q 030464           74 ERRRGVHWAFIGSPRAKKHVYAEMLSKLL-----EVPRISMSSIVRQDLSPRSSLHKQIANAVNRG---------EVVSE  139 (177)
Q Consensus        74 ~~~~~~~IlIiGpPGSGKSTlA~~LAk~l-----gl~~Is~~dLlr~el~~~s~lgk~i~~~l~~G---------~~Ipd  139 (177)
                      ...++-.|+|.||||+|||++|..++..-     .+.+|++.+.+..+.         + +  .-|         ..-|.
T Consensus      1423 Gi~~g~~vll~GppGtGKT~LA~ala~ea~~~G~~v~Fi~~e~~~~~l~---------a-~--~~G~dl~~l~v~~~~~~ 1490 (2050)
T 3cmu_A         1423 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIY---------A-R--KLGVDIDNLLCSQPDTG 1490 (2050)
T ss_dssp             SEETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCCHHH---------H-H--HTTCCTTTCEEECCSSH
T ss_pred             CccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEEcccccCHHH---------H-H--HcCCCchhceeecCChH
Confidence            45688899999999999999999986653     345888776544321         0 1  112         12244


Q ss_pred             HHHHHHHHHHHHccCCCCcceEEEeCC
Q 030464          140 DIIFGLLSKRLEDGYYRGEIGFILDGL  166 (177)
Q Consensus       140 eli~~Ll~~~L~~~~~~~~~G~ILDGf  166 (177)
                      +-...+++...++..   -.-+|||.+
T Consensus      1491 E~~l~~~~~lvr~~~---~~lVVIDsi 1514 (2050)
T 3cmu_A         1491 EQALEICDALARSGA---VDVIVVDSV 1514 (2050)
T ss_dssp             HHHHHHHHHHHHHTC---CSEEEESCG
T ss_pred             HHHHHHHHHHHhcCC---CCEEEEcCh
Confidence            455566666556554   368999987

>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12

Probab=95.68  E-value=0.0051  Score=49.83  Aligned_cols=31  Identities=23%  Similarity=0.247  Sum_probs=25.1

Q ss_pred             CcccCCCeEEEEEcCCCCCchHHHHHHHHHh
Q 030464           72 GRERRRGVHWAFIGSPRAKKHVYAEMLSKLL  102 (177)
Q Consensus        72 ~~~~~~~~~IlIiGpPGSGKSTlA~~LAk~l  102 (177)
                      .....++-.+.|+||.||||||+.+.|+..+
T Consensus        26 sl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~   56 (240)
T 1ji0_A           26 DLKVPRGQIVTLIGANGAGKTTTLSAIAGLV   56 (240)
T ss_dssp             EEEEETTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            3344577789999999999999999997653

>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A

Probab=95.66  E-value=0.0052  Score=49.45  Aligned_cols=35  Identities=26%  Similarity=0.140  Sum_probs=27.2

Q ss_pred             cCccCcccCCCeEEEEEcCCCCCchHHHHHHHHHh
Q 030464           68 PDTEGRERRRGVHWAFIGSPRAKKHVYAEMLSKLL  102 (177)
Q Consensus        68 ~~~~~~~~~~~~~IlIiGpPGSGKSTlA~~LAk~l  102 (177)
                      ++.......++-.+.|+||.||||||+.+.|+..+
T Consensus        24 l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~   58 (229)
T 2pze_A           24 LKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGEL   58 (229)
T ss_dssp             EEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             eeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            33334444677889999999999999999997654

>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}

Probab=95.66  E-value=0.0086  Score=47.63  Aligned_cols=34  Identities=9%  Similarity=-0.064  Sum_probs=28.2

Q ss_pred             CCCeEEEEEcCCCCCchHHHHHHHHHhCCCeeeCc
Q 030464           76 RRGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMS  110 (177)
Q Consensus        76 ~~~~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~  110 (177)
                      ..+.-|+|.|++|+||||+|..|.++ |...++-+
T Consensus        14 v~G~gvli~G~SGaGKStlal~L~~r-G~~lvaDD   47 (181)
T 3tqf_A           14 IDKMGVLITGEANIGKSELSLALIDR-GHQLVCDD   47 (181)
T ss_dssp             ETTEEEEEEESSSSSHHHHHHHHHHT-TCEEEESS
T ss_pred             ECCEEEEEEcCCCCCHHHHHHHHHHc-CCeEecCC
Confidence            35677999999999999999999874 77777744

>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}

Probab=95.66  E-value=0.0065  Score=47.39  Aligned_cols=26  Identities=15%  Similarity=0.072  Sum_probs=22.9

Q ss_pred             CCCeEEEEEcCCCCCchHHHHHHHHH
Q 030464           76 RRGVHWAFIGSPRAKKHVYAEMLSKL  101 (177)
Q Consensus        76 ~~~~~IlIiGpPGSGKSTlA~~LAk~  101 (177)
                      ...++|+|+|.+|+|||++..+|...
T Consensus        11 ~~~~ki~v~G~~~vGKSsli~~l~~~   36 (223)
T 3cpj_B           11 DLLFKIVLIGDSGVGKSNLLSRFTKN   36 (223)
T ss_dssp             CEEEEEEEESCTTSSHHHHHHHHHHC
T ss_pred             CeeeEEEEECcCCCCHHHHHHHHhcC
Confidence            45689999999999999999999763

>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A

Probab=95.65  E-value=0.0082  Score=51.03  Aligned_cols=28  Identities=14%  Similarity=-0.031  Sum_probs=24.3

Q ss_pred             ccCCCeEEEEEcCCCCCchHHHHHHHHH
Q 030464           74 ERRRGVHWAFIGSPRAKKHVYAEMLSKL  101 (177)
Q Consensus        74 ~~~~~~~IlIiGpPGSGKSTlA~~LAk~  101 (177)
                      ...++-.++|.|+||+|||++|..++..
T Consensus       118 Gl~~G~i~~I~G~~GsGKTtla~~la~~  145 (343)
T 1v5w_A          118 GIESMAITEAFGEFRTGKTQLSHTLCVT  145 (343)
T ss_dssp             SBCSSEEEEEECCTTCTHHHHHHHHHHH
T ss_pred             CCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence            3457778999999999999999999875

>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*

Probab=95.65  E-value=0.0066  Score=52.37  Aligned_cols=37  Identities=8%  Similarity=-0.007  Sum_probs=27.5

Q ss_pred             CCeEEEEEcCCCCCchHHHHHHHHHh----CCCeeeCchhh
Q 030464           77 RGVHWAFIGSPRAKKHVYAEMLSKLL----EVPRISMSSIV  113 (177)
Q Consensus        77 ~~~~IlIiGpPGSGKSTlA~~LAk~l----gl~~Is~~dLl  113 (177)
                      ++-.|+|+||+||||||+.+.|+..+    +-..+..++-+
T Consensus       122 ~~g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~~  162 (356)
T 3jvv_A          122 PRGLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPI  162 (356)
T ss_dssp             SSEEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESSC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCcH
Confidence            33479999999999999999987754    34455555543

>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12

Probab=95.59  E-value=0.0059  Score=50.22  Aligned_cols=35  Identities=23%  Similarity=0.261  Sum_probs=27.1

Q ss_pred             cCccCcccCCCeEEEEEcCCCCCchHHHHHHHHHh
Q 030464           68 PDTEGRERRRGVHWAFIGSPRAKKHVYAEMLSKLL  102 (177)
Q Consensus        68 ~~~~~~~~~~~~~IlIiGpPGSGKSTlA~~LAk~l  102 (177)
                      ++.......++-.+.|+||.||||||+.+.|+..+
T Consensus        31 l~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~   65 (256)
T 1vpl_A           31 LKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLI   65 (256)
T ss_dssp             EEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence            33334445677789999999999999999997653

>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12

Probab=95.58  E-value=0.0049  Score=49.44  Aligned_cols=35  Identities=17%  Similarity=0.137  Sum_probs=26.6

Q ss_pred             cCccCcccCCCeEEEEEcCCCCCchHHHHHHHHHh
Q 030464           68 PDTEGRERRRGVHWAFIGSPRAKKHVYAEMLSKLL  102 (177)
Q Consensus        68 ~~~~~~~~~~~~~IlIiGpPGSGKSTlA~~LAk~l  102 (177)
                      ++.......++-.+.|+||.||||||+.+.|+..+
T Consensus        25 l~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~   59 (214)
T 1sgw_A           25 LERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYL   59 (214)
T ss_dssp             EEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            33333444577789999999999999999997654

>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}

Probab=95.54  E-value=0.0064  Score=50.07  Aligned_cols=35  Identities=11%  Similarity=0.151  Sum_probs=27.0

Q ss_pred             cCccCcccCCCeEEEEEcCCCCCchHHHHHHHHHh
Q 030464           68 PDTEGRERRRGVHWAFIGSPRAKKHVYAEMLSKLL  102 (177)
Q Consensus        68 ~~~~~~~~~~~~~IlIiGpPGSGKSTlA~~LAk~l  102 (177)
                      ++.......++-.+.|+||.||||||+.+.|+..+
T Consensus        23 l~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~   57 (266)
T 2yz2_A           23 LENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLI   57 (266)
T ss_dssp             EEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             eeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence            33334445677789999999999999999987643

>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}

Probab=95.53  E-value=0.0052  Score=52.75  Aligned_cols=28  Identities=11%  Similarity=0.054  Sum_probs=24.4

Q ss_pred             CCCeEEEEEcCCCCCchHHHHHHHHHhC
Q 030464           76 RRGVHWAFIGSPRAKKHVYAEMLSKLLE  103 (177)
Q Consensus        76 ~~~~~IlIiGpPGSGKSTlA~~LAk~lg  103 (177)
                      .++..|+|+|+.||||||+.+.|+..+.
T Consensus       173 ~~G~~i~ivG~sGsGKSTll~~l~~~~~  200 (361)
T 2gza_A          173 QLERVIVVAGETGSGKTTLMKALMQEIP  200 (361)
T ss_dssp             HTTCCEEEEESSSSCHHHHHHHHHTTSC
T ss_pred             hcCCEEEEECCCCCCHHHHHHHHHhcCC
Confidence            4667899999999999999999988664

>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C

Probab=95.53  E-value=0.0061  Score=49.92  Aligned_cols=32  Identities=19%  Similarity=0.202  Sum_probs=25.5

Q ss_pred             cCcccCCCeEEEEEcCCCCCchHHHHHHHHHh
Q 030464           71 EGRERRRGVHWAFIGSPRAKKHVYAEMLSKLL  102 (177)
Q Consensus        71 ~~~~~~~~~~IlIiGpPGSGKSTlA~~LAk~l  102 (177)
                      ......++-.+.|+||.||||||+.+.|+..+
T Consensus        19 vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~   50 (249)
T 2qi9_C           19 LSGEVRAGEILHLVGPNGAGKSTLLARMAGMT   50 (249)
T ss_dssp             EEEEEETTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             eEEEEcCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence            33444577789999999999999999987643

>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C

Probab=95.52  E-value=0.0028  Score=48.00  Aligned_cols=26  Identities=15%  Similarity=0.187  Sum_probs=7.3

Q ss_pred             CCCeEEEEEcCCCCCchHHHHHHHHH
Q 030464           76 RRGVHWAFIGSPRAKKHVYAEMLSKL  101 (177)
Q Consensus        76 ~~~~~IlIiGpPGSGKSTlA~~LAk~  101 (177)
                      .+.++|+|+|.+|+|||++..+|...
T Consensus        18 ~~~~~i~v~G~~~~GKssli~~l~~~   43 (208)
T 2yc2_C           18 TLRCKVAVVGEATVGKSALISMFTSK   43 (208)
T ss_dssp             EEEEEEEEC-----------------
T ss_pred             ccceEEEEECCCCCCHHHHHHHHHhC
Confidence            35689999999999999999988764

>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}

Probab=95.51  E-value=0.0062  Score=50.69  Aligned_cols=32  Identities=19%  Similarity=0.285  Sum_probs=25.6

Q ss_pred             cCcccCCCeEEEEEcCCCCCchHHHHHHHHHh
Q 030464           71 EGRERRRGVHWAFIGSPRAKKHVYAEMLSKLL  102 (177)
Q Consensus        71 ~~~~~~~~~~IlIiGpPGSGKSTlA~~LAk~l  102 (177)
                      ......++-.+.|+||.||||||+.+.|+..+
T Consensus        40 isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~   71 (279)
T 2ihy_A           40 ISWQIAKGDKWILYGLNGAGKTTLLNILNAYE   71 (279)
T ss_dssp             EEEEEETTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             eeEEEcCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence            33344577789999999999999999997654

>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*

Probab=95.49  E-value=0.0069  Score=53.17  Aligned_cols=37  Identities=19%  Similarity=0.056  Sum_probs=27.4

Q ss_pred             CccccCccC-cccCCCeEEEEEcCCCCCchHHHHHHHH
Q 030464           64 SVTLPDTEG-RERRRGVHWAFIGSPRAKKHVYAEMLSK  100 (177)
Q Consensus        64 ~~~~~~~~~-~~~~~~~~IlIiGpPGSGKSTlA~~LAk  100 (177)
                      -.+.++.-. ....++-.+.|+|+|||||||++..|+-
T Consensus       163 G~~~LD~lLgGGI~~Gei~~I~G~sGsGKTTLl~~la~  200 (400)
T 3lda_A          163 GSKNLDTLLGGGVETGSITELFGEFRTGKSQLCHTLAV  200 (400)
T ss_dssp             SCHHHHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHH
T ss_pred             CChhHHHHhcCCcCCCcEEEEEcCCCCChHHHHHHHHH
Confidence            344555432 3445777899999999999999998863

>1e2k_A Thymidine kinase; transferase, antiviral drug, enzyme-prodrug gene therapy, sugar ring pucker; HET: TMC; 1.7A {Herpes simplex virus} SCOP: c.37.1.1 PDB: 1e2i_A* 1e2h_A* 1e2m_A* 1e2n_A* 1e2p_A* 1ki2_A* 1ki3_A* 1ki4_A* 1ki6_B* 1ki7_A* 1ki8_A* 3rdp_A* 2ki5_A* 1kim_A* 1qhi_A* 1p7c_A* 1vtk_A* 2vtk_A* 3vtk_A* 3f0t_A* ...

Probab=95.48  E-value=0.0044  Score=53.31  Aligned_cols=28  Identities=14%  Similarity=0.013  Sum_probs=22.7

Q ss_pred             CCCeEEEEEcCCCCCchHHHHHHHHHhC
Q 030464           76 RRGVHWAFIGSPRAKKHVYAEMLSKLLE  103 (177)
Q Consensus        76 ~~~~~IlIiGpPGSGKSTlA~~LAk~lg  103 (177)
                      .+.+.|+|-|+-||||||+++.|++.++
T Consensus         2 ~~~~fI~~EG~dGsGKTT~~~~La~~L~   29 (331)
T 1e2k_A            2 PTLLRVYIDGPHGMGKTTTTQLLVALGS   29 (331)
T ss_dssp             CEEEEEEECSCTTSSHHHHHHHHTC---
T ss_pred             CccEEEEEECCCCCCHHHHHHHHHHHhh
Confidence            3567899999999999999999998774

>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A

Probab=95.48  E-value=0.0089  Score=54.08  Aligned_cols=27  Identities=15%  Similarity=0.134  Sum_probs=22.1

Q ss_pred             CCCeEEEEEcCCCCCchHHHHHHHHHh
Q 030464           76 RRGVHWAFIGSPRAKKHVYAEMLSKLL  102 (177)
Q Consensus        76 ~~~~~IlIiGpPGSGKSTlA~~LAk~l  102 (177)
                      .++.+|+|+|+||+||||++..|+..+
T Consensus        99 ~~~~vI~ivG~~GvGKTTl~~kLA~~l  125 (504)
T 2j37_W           99 GKQNVIMFVGLQGSGKTTTCSKLAYYY  125 (504)
T ss_dssp             S--EEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            456789999999999999999999654

>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}

Probab=95.46  E-value=0.003  Score=48.77  Aligned_cols=25  Identities=16%  Similarity=0.190  Sum_probs=21.8

Q ss_pred             CCCeEEEEEcCCCCCchHHHHHHHH
Q 030464           76 RRGVHWAFIGSPRAKKHVYAEMLSK  100 (177)
Q Consensus        76 ~~~~~IlIiGpPGSGKSTlA~~LAk  100 (177)
                      .+.++|+|+|.+|+||||+..+|..
T Consensus         9 ~~~~ki~vvG~~~~GKSsli~~l~~   33 (218)
T 4djt_A            9 ELTYKICLIGDGGVGKTTYINRVLD   33 (218)
T ss_dssp             -CEEEEEEECCTTSSHHHHHCBCTT
T ss_pred             cCccEEEEECCCCCCHHHHHHHHhc
Confidence            4678999999999999999998863

>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F

Probab=95.44  E-value=0.011  Score=49.64  Aligned_cols=26  Identities=15%  Similarity=0.074  Sum_probs=22.8

Q ss_pred             CCeEEEEEcCCCCCchHHHHHHHHHh
Q 030464           77 RGVHWAFIGSPRAKKHVYAEMLSKLL  102 (177)
Q Consensus        77 ~~~~IlIiGpPGSGKSTlA~~LAk~l  102 (177)
                      ++..|+|+|++|+||||++..||..+
T Consensus        97 ~~~vi~i~G~~G~GKTT~~~~la~~~  122 (297)
T 1j8m_F           97 IPYVIMLVGVQGTGKTTTAGKLAYFY  122 (297)
T ss_dssp             SSEEEEEECSSCSSTTHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            36778889999999999999998765

>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...

Probab=95.44  E-value=0.0085  Score=51.41  Aligned_cols=48  Identities=15%  Similarity=-0.042  Sum_probs=33.5

Q ss_pred             CccccCccCc--ccCCCeEEEEEcCCCCCchHHHHHHHHHh-----CCCeeeCch
Q 030464           64 SVTLPDTEGR--ERRRGVHWAFIGSPRAKKHVYAEMLSKLL-----EVPRISMSS  111 (177)
Q Consensus        64 ~~~~~~~~~~--~~~~~~~IlIiGpPGSGKSTlA~~LAk~l-----gl~~Is~~d  111 (177)
                      -.+.++....  ...++-.++|.|+||+||||+|..++...     .+.+++...
T Consensus        45 G~~~LD~~Lg~GGl~~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E~   99 (349)
T 2zr9_A           45 GSISLDVALGIGGLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEH   99 (349)
T ss_dssp             SCHHHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred             CCHHHHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCC
Confidence            3444444333  34467789999999999999999998643     355777654

>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}

Probab=95.42  E-value=0.0069  Score=49.61  Aligned_cols=32  Identities=16%  Similarity=0.182  Sum_probs=25.5

Q ss_pred             cCcccCCCeEEEEEcCCCCCchHHHHHHHHHh
Q 030464           71 EGRERRRGVHWAFIGSPRAKKHVYAEMLSKLL  102 (177)
Q Consensus        71 ~~~~~~~~~~IlIiGpPGSGKSTlA~~LAk~l  102 (177)
                      ......++-.+.|+||.||||||+.+.|+..+
T Consensus        24 isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~   55 (253)
T 2nq2_C           24 LNFDLNKGDILAVLGQNGCGKSTLLDLLLGIH   55 (253)
T ss_dssp             EEEEEETTCEEEEECCSSSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            33444577789999999999999999987643

>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8

Probab=95.42  E-value=0.0089  Score=47.32  Aligned_cols=25  Identities=16%  Similarity=0.195  Sum_probs=22.2

Q ss_pred             CCCeEEEEEcCCCCCchHHHHHHHH
Q 030464           76 RRGVHWAFIGSPRAKKHVYAEMLSK  100 (177)
Q Consensus        76 ~~~~~IlIiGpPGSGKSTlA~~LAk  100 (177)
                      ....+|+|+|.||+|||++..++..
T Consensus        35 ~~~~kVvlvG~~~vGKSSLl~r~~~   59 (211)
T 2g3y_A           35 NTYYRVVLIGEQGVGKSTLANIFAG   59 (211)
T ss_dssp             CCEEEEEEECCTTSSHHHHHHHHHC
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHh
Confidence            4568999999999999999999974

>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*

Probab=95.41  E-value=0.0088  Score=50.25  Aligned_cols=28  Identities=18%  Similarity=0.081  Sum_probs=23.9

Q ss_pred             cCCCeEEEEEcCCCCCchHHHHHHHHHh
Q 030464           75 RRRGVHWAFIGSPRAKKHVYAEMLSKLL  102 (177)
Q Consensus        75 ~~~~~~IlIiGpPGSGKSTlA~~LAk~l  102 (177)
                      ..++-.++|.|+||+|||++|..++...
T Consensus       104 l~~G~i~~i~G~~GsGKT~la~~la~~~  131 (324)
T 2z43_A          104 IETRTMTEFFGEFGSGKTQLCHQLSVNV  131 (324)
T ss_dssp             EETTSEEEEEESTTSSHHHHHHHHHHHT
T ss_pred             CCCCcEEEEECCCCCCHhHHHHHHHHHH
Confidence            3466789999999999999999998753

>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}

Probab=94.36  E-value=0.0027  Score=48.59  Aligned_cols=25  Identities=8%  Similarity=0.137  Sum_probs=22.3

Q ss_pred             CCCeEEEEEcCCCCCchHHHHHHHH
Q 030464           76 RRGVHWAFIGSPRAKKHVYAEMLSK  100 (177)
Q Consensus        76 ~~~~~IlIiGpPGSGKSTlA~~LAk  100 (177)
                      .+.++|+|+|.+|+||||+..++..
T Consensus        28 ~~~~ki~v~G~~~~GKSsli~~l~~   52 (204)
T 3th5_A           28 GQAIKCVVVGDGAVGKTCLLISYTT   52 (204)
Confidence            5778999999999999999988764

>1of1_A Thymidine kinase; transferase, antiviral drug, enzyme- prodrug gene, DNA synthesis, ATP-binding; HET: SCT; 1.95A {Herpes simplex virus} SCOP: c.37.1.1

Probab=95.36  E-value=0.0061  Score=53.41  Aligned_cols=28  Identities=14%  Similarity=0.013  Sum_probs=22.8

Q ss_pred             CCCeEEEEEcCCCCCchHHHHHHHHHhC
Q 030464           76 RRGVHWAFIGSPRAKKHVYAEMLSKLLE  103 (177)
Q Consensus        76 ~~~~~IlIiGpPGSGKSTlA~~LAk~lg  103 (177)
                      .+++.|+|-|+-||||||+++.|++.++
T Consensus        47 ~~~~fIt~EG~dGsGKTT~~~~Lae~L~   74 (376)
T 1of1_A           47 PTLLRVYIDGPHGMGKTTTTQLLVALGS   74 (376)
T ss_dssp             CEEEEEEECSSTTSSHHHHHHHHHC---
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHHHhh
Confidence            4667889999999999999999999874

>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}

Probab=95.35  E-value=0.0074  Score=53.83  Aligned_cols=27  Identities=15%  Similarity=0.229  Sum_probs=23.7

Q ss_pred             CCCeEEEEEcCCCCCchHHHHHHHHHh
Q 030464           76 RRGVHWAFIGSPRAKKHVYAEMLSKLL  102 (177)
Q Consensus        76 ~~~~~IlIiGpPGSGKSTlA~~LAk~l  102 (177)
                      .++.++.|+||.||||||+++.|+..+
T Consensus       136 ~~Ge~v~IvGpnGsGKSTLlr~L~Gl~  162 (460)
T 2npi_A          136 FEGPRVVIVGGSQTGKTSLSRTLCSYA  162 (460)
T ss_dssp             SSCCCEEEEESTTSSHHHHHHHHHHTT
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCcc
Confidence            467889999999999999999997753

>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*

Probab=95.30  E-value=0.013  Score=51.67  Aligned_cols=27  Identities=11%  Similarity=-0.140  Sum_probs=23.3

Q ss_pred             CCeEEEEEcCCCCCchHHHHHHHHHhC
Q 030464           77 RGVHWAFIGSPRAKKHVYAEMLSKLLE  103 (177)
Q Consensus        77 ~~~~IlIiGpPGSGKSTlA~~LAk~lg  103 (177)
                      ++-.|+|+||+||||||+.+.|...+.
T Consensus       166 ~ggii~I~GpnGSGKTTlL~allg~l~  192 (418)
T 1p9r_A          166 PHGIILVTGPTGSGKSTTLYAGLQELN  192 (418)
T ss_dssp             SSEEEEEECSTTSCHHHHHHHHHHHHC
T ss_pred             cCCeEEEECCCCCCHHHHHHHHHhhcC
Confidence            445789999999999999999988764

>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*

Probab=95.27  E-value=0.011  Score=48.59  Aligned_cols=25  Identities=20%  Similarity=0.348  Sum_probs=22.5

Q ss_pred             CCeEEEEEcCCCCCchHHHHHHHHH
Q 030464           77 RGVHWAFIGSPRAKKHVYAEMLSKL  101 (177)
Q Consensus        77 ~~~~IlIiGpPGSGKSTlA~~LAk~  101 (177)
                      +.++|+|+|.||+||||+..+|...
T Consensus         2 ~~~~I~lvG~~n~GKSTLin~l~g~   26 (274)
T 3i8s_A            2 KKLTIGLIGNPNSGKTTLFNQLTGS   26 (274)
T ss_dssp             CCEEEEEEECTTSSHHHHHHHHHTT
T ss_pred             CccEEEEECCCCCCHHHHHHHHhCC
Confidence            5689999999999999999999764

>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*

Probab=95.27  E-value=0.013  Score=48.98  Aligned_cols=26  Identities=19%  Similarity=0.257  Sum_probs=22.6

Q ss_pred             CCeEEEEEcCCCCCchHHHHHHHHHh
Q 030464           77 RGVHWAFIGSPRAKKHVYAEMLSKLL  102 (177)
Q Consensus        77 ~~~~IlIiGpPGSGKSTlA~~LAk~l  102 (177)
                      ++..|.|+|++|+||||++..||..+
T Consensus        97 ~~~~i~i~g~~G~GKTT~~~~la~~~  122 (295)
T 1ls1_A           97 DRNLWFLVGLQGSGKTTTAAKLALYY  122 (295)
T ss_dssp             SSEEEEEECCTTTTHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            56678888999999999999998765

>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}

Probab=95.26  E-value=0.014  Score=47.05  Aligned_cols=26  Identities=8%  Similarity=0.095  Sum_probs=23.5

Q ss_pred             cCCCeEEEEEcCC---------CCCchHHHHHHHH
Q 030464           75 RRRGVHWAFIGSP---------RAKKHVYAEMLSK  100 (177)
Q Consensus        75 ~~~~~~IlIiGpP---------GSGKSTlA~~LAk  100 (177)
                      ..+.++|+|+|.|         |+|||++..++..
T Consensus        16 ~~~~~ki~lvG~~~~~~~~~~~~vGKSsLi~~l~~   50 (255)
T 3c5h_A           16 FQGTYNISVVGLSGTEKEKGQCGIGKSCLCNRFVR   50 (255)
T ss_dssp             CCSCEEEEEEESCCCTTTTTTCCCSHHHHHHHHHC
T ss_pred             CCceeEEEEECCCccccccCCCCcCHHHHHHHHHh
Confidence            3567899999999         9999999999986

>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}

Probab=95.19  E-value=0.011  Score=51.18  Aligned_cols=30  Identities=23%  Similarity=0.267  Sum_probs=24.7

Q ss_pred             cccCCCeEEEEEcCCCCCchHHHHHHHHHh
Q 030464           73 RERRRGVHWAFIGSPRAKKHVYAEMLSKLL  102 (177)
Q Consensus        73 ~~~~~~~~IlIiGpPGSGKSTlA~~LAk~l  102 (177)
                      ....++-.+.|+||.||||||+.+.|+--.
T Consensus        24 l~i~~Ge~~~llGpnGsGKSTLLr~iaGl~   53 (359)
T 2yyz_A           24 FEVKDGEFVALLGPSGCGKTTTLLMLAGIY   53 (359)
T ss_dssp             EEECTTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred             EEEcCCCEEEEEcCCCchHHHHHHHHHCCC
Confidence            344567789999999999999999998643

>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}

Probab=95.18  E-value=0.0052  Score=47.47  Aligned_cols=26  Identities=23%  Similarity=0.212  Sum_probs=22.9

Q ss_pred             CCCeEEEEEcCCCCCchHHHHHHHHH
Q 030464           76 RRGVHWAFIGSPRAKKHVYAEMLSKL  101 (177)
Q Consensus        76 ~~~~~IlIiGpPGSGKSTlA~~LAk~  101 (177)
                      ...++|+|+|.+|+||||+..+|...
T Consensus        27 ~~~~~i~v~G~~~~GKSslin~l~~~   52 (223)
T 4dhe_A           27 TVQPEIAFAGRSNAGKSTAINVLCNQ   52 (223)
T ss_dssp             CCSCEEEEEESCHHHHHHHHHHHTTC
T ss_pred             CCCCEEEEEcCCCCCHHHHHHHHhCC
Confidence            35689999999999999999999765

>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}

Probab=95.17  E-value=0.0087  Score=49.45  Aligned_cols=31  Identities=23%  Similarity=0.233  Sum_probs=24.9

Q ss_pred             cCcccCCCeEEEEEcCCCCCchHHHHHHHHHh
Q 030464           71 EGRERRRGVHWAFIGSPRAKKHVYAEMLSKLL  102 (177)
Q Consensus        71 ~~~~~~~~~~IlIiGpPGSGKSTlA~~LAk~l  102 (177)
                      ...... +-.+.|+||.||||||+.+.|+..+
T Consensus        24 vsl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~   54 (263)
T 2pjz_A           24 INLEVN-GEKVIILGPNGSGKTTLLRAISGLL   54 (263)
T ss_dssp             EEEEEC-SSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             eeEEEC-CEEEEEECCCCCCHHHHHHHHhCCC
Confidence            334445 7789999999999999999997654

>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}

Probab=95.16  E-value=0.012  Score=51.75  Aligned_cols=23  Identities=13%  Similarity=0.229  Sum_probs=21.1

Q ss_pred             EEEEEcCCCCCchHHHHHHHHHh
Q 030464           80 HWAFIGSPRAKKHVYAEMLSKLL  102 (177)
Q Consensus        80 ~IlIiGpPGSGKSTlA~~LAk~l  102 (177)
                      .++|.|+||+|||+++..+++.+
T Consensus        47 ~~li~G~aGTGKT~ll~~~~~~l   69 (459)
T 3upu_A           47 HVTINGPAGTGATTLTKFIIEAL   69 (459)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHH
T ss_pred             EEEEEeCCCCCHHHHHHHHHHHH
Confidence            78999999999999999988765

>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}

Probab=95.15  E-value=0.011  Score=51.34  Aligned_cols=31  Identities=16%  Similarity=0.114  Sum_probs=25.2

Q ss_pred             CcccCCCeEEEEEcCCCCCchHHHHHHHHHh
Q 030464           72 GRERRRGVHWAFIGSPRAKKHVYAEMLSKLL  102 (177)
Q Consensus        72 ~~~~~~~~~IlIiGpPGSGKSTlA~~LAk~l  102 (177)
                      .....++-.+.|+||.||||||+.+.|+-..
T Consensus        24 sl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~   54 (359)
T 3fvq_A           24 SLSLDPGEILFIIGASGCGKTTLLRCLAGFE   54 (359)
T ss_dssp             EEEECTTCEEEEEESTTSSHHHHHHHHHTSS
T ss_pred             EEEEcCCCEEEEECCCCchHHHHHHHHhcCC
Confidence            3344567789999999999999999998644

>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*

Probab=95.14  E-value=0.012  Score=48.59  Aligned_cols=25  Identities=20%  Similarity=0.312  Sum_probs=21.7

Q ss_pred             CCeEEEEEcCCCCCchHHHHHHHHH
Q 030464           77 RGVHWAFIGSPRAKKHVYAEMLSKL  101 (177)
Q Consensus        77 ~~~~IlIiGpPGSGKSTlA~~LAk~  101 (177)
                      ..++|+|+|.||+||||+..+|...
T Consensus         2 ~~~kI~lvG~~nvGKSTL~n~L~g~   26 (272)
T 3b1v_A            2 SMTEIALIGNPNSGKTSLFNLITGH   26 (272)
T ss_dssp             -CEEEEEECCTTSSHHHHHHHHHCC
T ss_pred             CceEEEEECCCCCCHHHHHHHHHCC
Confidence            3578999999999999999999864

>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A

Probab=95.11  E-value=0.012  Score=50.67  Aligned_cols=47  Identities=11%  Similarity=-0.065  Sum_probs=32.7

Q ss_pred             ccccCccCc--ccCCCeEEEEEcCCCCCchHHHHHHHHHh-----CCCeeeCch
Q 030464           65 VTLPDTEGR--ERRRGVHWAFIGSPRAKKHVYAEMLSKLL-----EVPRISMSS  111 (177)
Q Consensus        65 ~~~~~~~~~--~~~~~~~IlIiGpPGSGKSTlA~~LAk~l-----gl~~Is~~d  111 (177)
                      .+.++....  ...++-.++|.|+||+||||+|..++...     .+.+|+...
T Consensus        48 ~~~LD~~Lg~GGl~~G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~E~  101 (356)
T 1u94_A           48 SLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEH  101 (356)
T ss_dssp             CHHHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred             CHHHHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCC
Confidence            444444332  33467789999999999999999988653     355777743

>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}

Probab=95.09  E-value=0.012  Score=50.96  Aligned_cols=31  Identities=13%  Similarity=0.224  Sum_probs=25.2

Q ss_pred             CcccCCCeEEEEEcCCCCCchHHHHHHHHHh
Q 030464           72 GRERRRGVHWAFIGSPRAKKHVYAEMLSKLL  102 (177)
Q Consensus        72 ~~~~~~~~~IlIiGpPGSGKSTlA~~LAk~l  102 (177)
                      .....++-.+.|+||.||||||+.+.|+-..
T Consensus        23 sl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~   53 (362)
T 2it1_A           23 NLKIKDGEFMALLGPSGSGKSTLLYTIAGIY   53 (362)
T ss_dssp             EEEECTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEECCCCEEEEECCCCchHHHHHHHHhcCC
Confidence            3344567789999999999999999998654

>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A

Probab=95.08  E-value=0.012  Score=51.41  Aligned_cols=32  Identities=19%  Similarity=0.265  Sum_probs=25.7

Q ss_pred             cCcccCCCeEEEEEcCCCCCchHHHHHHHHHh
Q 030464           71 EGRERRRGVHWAFIGSPRAKKHVYAEMLSKLL  102 (177)
Q Consensus        71 ~~~~~~~~~~IlIiGpPGSGKSTlA~~LAk~l  102 (177)
                      ......++-.+.|+||.||||||+.+.|+-..
T Consensus        22 vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~   53 (381)
T 3rlf_A           22 INLDIHEGEFVVFVGPSGCGKSTLLRMIAGLE   53 (381)
T ss_dssp             EEEEECTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred             eEEEECCCCEEEEEcCCCchHHHHHHHHHcCC
Confidence            33344577789999999999999999998654

>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}

Probab=95.06  E-value=0.0041  Score=47.53  Aligned_cols=25  Identities=12%  Similarity=0.065  Sum_probs=21.8

Q ss_pred             CCCeEEEEEcCCCCCchHHHHHHHH
Q 030464           76 RRGVHWAFIGSPRAKKHVYAEMLSK  100 (177)
Q Consensus        76 ~~~~~IlIiGpPGSGKSTlA~~LAk  100 (177)
                      .+.++|+|+|.+|+||||+..+|..
T Consensus        31 ~~~~ki~vvG~~~~GKSsli~~l~~   55 (199)
T 3l0i_B           31 DYLFKLLLIGDSGVGKSCLLLRFAD   55 (199)
T ss_dssp             SEEEEEEEECCTTSCCTTTTTSSBC
T ss_pred             CcceEEEEECCCCCCHHHHHHHHhc
Confidence            4678999999999999999988753

>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}

Probab=95.05  E-value=0.012  Score=50.83  Aligned_cols=32  Identities=16%  Similarity=0.214  Sum_probs=25.6

Q ss_pred             cCcccCCCeEEEEEcCCCCCchHHHHHHHHHh
Q 030464           71 EGRERRRGVHWAFIGSPRAKKHVYAEMLSKLL  102 (177)
Q Consensus        71 ~~~~~~~~~~IlIiGpPGSGKSTlA~~LAk~l  102 (177)
                      ......++-.+.|+||.||||||+.+.|+-..
T Consensus        34 vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~   65 (355)
T 1z47_A           34 VSFQIREGEMVGLLGPSGSGKTTILRLIAGLE   65 (355)
T ss_dssp             EEEEEETTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred             eEEEECCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence            33344577789999999999999999998643

>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*

Probab=95.04  E-value=0.01  Score=49.70  Aligned_cols=35  Identities=26%  Similarity=0.140  Sum_probs=26.8

Q ss_pred             cCccCcccCCCeEEEEEcCCCCCchHHHHHHHHHh
Q 030464           68 PDTEGRERRRGVHWAFIGSPRAKKHVYAEMLSKLL  102 (177)
Q Consensus        68 ~~~~~~~~~~~~~IlIiGpPGSGKSTlA~~LAk~l  102 (177)
                      ++.......++-.+.|+|+.||||||+.+.|+..+
T Consensus        54 l~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~   88 (290)
T 2bbs_A           54 LKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGEL   88 (290)
T ss_dssp             EEEEEEEECTTCEEEEEESTTSSHHHHHHHHTTSS
T ss_pred             EEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence            33333445677889999999999999999987643

>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*

Probab=95.04  E-value=0.013  Score=51.01  Aligned_cols=30  Identities=17%  Similarity=0.233  Sum_probs=24.8

Q ss_pred             cccCCCeEEEEEcCCCCCchHHHHHHHHHh
Q 030464           73 RERRRGVHWAFIGSPRAKKHVYAEMLSKLL  102 (177)
Q Consensus        73 ~~~~~~~~IlIiGpPGSGKSTlA~~LAk~l  102 (177)
                      ....++-.+.|+||.||||||+.+.|+-..
T Consensus        32 l~i~~Ge~~~llGpnGsGKSTLLr~iaGl~   61 (372)
T 1v43_A           32 LTIKDGEFLVLLGPSGCGKTTTLRMIAGLE   61 (372)
T ss_dssp             EEECTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEECCCCEEEEECCCCChHHHHHHHHHcCC
Confidence            344567789999999999999999998643

>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X

Probab=95.02  E-value=0.011  Score=49.23  Aligned_cols=26  Identities=19%  Similarity=0.144  Sum_probs=22.2

Q ss_pred             CCCeEEEEEcCCCCCchHHHHHHHHH
Q 030464           76 RRGVHWAFIGSPRAKKHVYAEMLSKL  101 (177)
Q Consensus        76 ~~~~~IlIiGpPGSGKSTlA~~LAk~  101 (177)
                      .+..+|.|+|+||+||||+..+|...
T Consensus         6 ~r~~~VaIvG~~nvGKSTLln~L~g~   31 (301)
T 1ega_A            6 SYCGFIAIVGRPNVGKSTLLNKLLGQ   31 (301)
T ss_dssp             CEEEEEEEECSSSSSHHHHHHHHHTC
T ss_pred             ccCCEEEEECCCCCCHHHHHHHHHCC
Confidence            35568999999999999999999753

>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A

Probab=95.02  E-value=0.0069  Score=51.48  Aligned_cols=26  Identities=15%  Similarity=0.290  Sum_probs=23.0

Q ss_pred             CCeEEEEEcCCCCCchHHHHHHHHHh
Q 030464           77 RGVHWAFIGSPRAKKHVYAEMLSKLL  102 (177)
Q Consensus        77 ~~~~IlIiGpPGSGKSTlA~~LAk~l  102 (177)
                      .+-.++|+|++||||||+.+.|+..+
T Consensus       170 ~g~~v~i~G~~GsGKTTll~~l~g~~  195 (330)
T 2pt7_A          170 IGKNVIVCGGTGSGKTTYIKSIMEFI  195 (330)
T ss_dssp             HTCCEEEEESTTSCHHHHHHHGGGGS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            45689999999999999999998765

>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*

Probab=94.99  E-value=0.016  Score=43.73  Aligned_cols=24  Identities=17%  Similarity=0.192  Sum_probs=21.1

Q ss_pred             EEEEEcCCCCCchHHHHHHHHHhC
Q 030464           80 HWAFIGSPRAKKHVYAEMLSKLLE  103 (177)
Q Consensus        80 ~IlIiGpPGSGKSTlA~~LAk~lg  103 (177)
                      ..+|+|+.||||||+.+.|.-.++
T Consensus        28 ~~~i~G~NGsGKStll~ai~~~l~   51 (182)
T 3kta_A           28 FTAIVGANGSGKSNIGDAILFVLG   51 (182)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHHTT
T ss_pred             cEEEECCCCCCHHHHHHHHHHHHc
Confidence            678999999999999999987654

>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}

Probab=94.97  E-value=0.012  Score=47.92  Aligned_cols=23  Identities=26%  Similarity=0.405  Sum_probs=20.7

Q ss_pred             eEEEEEcCCCCCchHHHHHHHHH
Q 030464           79 VHWAFIGSPRAKKHVYAEMLSKL  101 (177)
Q Consensus        79 ~~IlIiGpPGSGKSTlA~~LAk~  101 (177)
                      ++|+|+|.|||||||+..+|...
T Consensus         2 ~kI~lvG~~n~GKSTL~n~L~g~   24 (256)
T 3iby_A            2 THALLIGNPNCGKTTLFNALTNA   24 (256)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHTT
T ss_pred             CEEEEECCCCCCHHHHHHHHHCC
Confidence            57999999999999999999764

>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*

Probab=94.97  E-value=0.01  Score=53.21  Aligned_cols=34  Identities=12%  Similarity=0.058  Sum_probs=26.8

Q ss_pred             ccccCccCc-ccCCCeEEEEEcCCCCCchHHHHHH
Q 030464           65 VTLPDTEGR-ERRRGVHWAFIGSPRAKKHVYAEML   98 (177)
Q Consensus        65 ~~~~~~~~~-~~~~~~~IlIiGpPGSGKSTlA~~L   98 (177)
                      .+.++.-.. ...++-.++|+|++||||||+++.+
T Consensus        25 ~~~Ld~i~~G~i~~Ge~~~l~G~nGsGKSTL~~~~   59 (525)
T 1tf7_A           25 IEGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQF   59 (525)
T ss_dssp             CTTHHHHTTSSEETTSEEEEEESTTSSHHHHHHHH
T ss_pred             chhHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHH
Confidence            445555554 5567888999999999999999984

>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A

Probab=94.95  E-value=0.014  Score=50.74  Aligned_cols=30  Identities=20%  Similarity=0.265  Sum_probs=24.6

Q ss_pred             cccCCCeEEEEEcCCCCCchHHHHHHHHHh
Q 030464           73 RERRRGVHWAFIGSPRAKKHVYAEMLSKLL  102 (177)
Q Consensus        73 ~~~~~~~~IlIiGpPGSGKSTlA~~LAk~l  102 (177)
                      ....++-.+.|+||.||||||+.+.|+-..
T Consensus        24 l~i~~Ge~~~llGpnGsGKSTLLr~iaGl~   53 (372)
T 1g29_1           24 LEVKDGEFMILLGPSGCGKTTTLRMIAGLE   53 (372)
T ss_dssp             EEEETTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred             EEEcCCCEEEEECCCCcHHHHHHHHHHcCC
Confidence            334566789999999999999999998643

>1osn_A Thymidine kinase, VZV-TK; chickenpox, BVDU-MP, transferase; HET: BVP ADP; 3.20A {Human herpesvirus 3} SCOP: c.37.1.1

Probab=94.94  E-value=0.011  Score=51.00  Aligned_cols=30  Identities=20%  Similarity=0.121  Sum_probs=25.9

Q ss_pred             CCCeEEEEEcCCCCCchHHH-HHHHHHhCCC
Q 030464           76 RRGVHWAFIGSPRAKKHVYA-EMLSKLLEVP  105 (177)
Q Consensus        76 ~~~~~IlIiGpPGSGKSTlA-~~LAk~lgl~  105 (177)
                      .+++.|+|-|+-||||||++ +.|++.++-.
T Consensus        10 ~~~~~I~iEG~~GaGKTT~~~~~L~~~l~~~   40 (341)
T 1osn_A           10 MGVLRIYLDGAYGIGKTTAAEEFLHHFAITP   40 (341)
T ss_dssp             EEEEEEEEEESSSSCTTHHHHHHHHTTTTSG
T ss_pred             CCceEEEEeCCCCCCHHHHHHHHHHHHHhhC
Confidence            46688999999999999999 9999987643

>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V

Probab=94.94  E-value=0.014  Score=50.72  Aligned_cols=26  Identities=23%  Similarity=0.178  Sum_probs=22.5

Q ss_pred             CCeEEEEEcCCCCCchHHHHHHHHHh
Q 030464           77 RGVHWAFIGSPRAKKHVYAEMLSKLL  102 (177)
Q Consensus        77 ~~~~IlIiGpPGSGKSTlA~~LAk~l  102 (177)
                      ++..+.|+|++|+||||+.+.|+...
T Consensus       214 ~G~~~~lvG~sG~GKSTLln~L~g~~  239 (358)
T 2rcn_A          214 TGRISIFAGQSGVGKSSLLNALLGLQ  239 (358)
T ss_dssp             TTSEEEEECCTTSSHHHHHHHHHCCS
T ss_pred             CCCEEEEECCCCccHHHHHHHHhccc
Confidence            56689999999999999999998543

>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9

Probab=94.93  E-value=0.018  Score=50.97  Aligned_cols=27  Identities=22%  Similarity=0.140  Sum_probs=22.6

Q ss_pred             CCCeEEEEEcCCCCCchHHHHHHHHHh
Q 030464           76 RRGVHWAFIGSPRAKKHVYAEMLSKLL  102 (177)
Q Consensus        76 ~~~~~IlIiGpPGSGKSTlA~~LAk~l  102 (177)
                      .++.+|+|+|++|+||||++..||..+
T Consensus        98 ~~~~vI~ivG~~GvGKTT~a~~LA~~l  124 (433)
T 2xxa_A           98 QPPAVVLMAGLQGAGKTTSVGKLGKFL  124 (433)
T ss_dssp             SSSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            356778888999999999999998654

>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*

Probab=94.93  E-value=0.012  Score=49.09  Aligned_cols=24  Identities=13%  Similarity=0.034  Sum_probs=20.4

Q ss_pred             CCeEEEEEcCCCCCchHHHHHHHH
Q 030464           77 RGVHWAFIGSPRAKKHVYAEMLSK  100 (177)
Q Consensus        77 ~~~~IlIiGpPGSGKSTlA~~LAk  100 (177)
                      ...+|+|+|++|+||||+.+.|+.
T Consensus        17 ~~~~I~lvG~nG~GKSTLl~~L~g   40 (301)
T 2qnr_A           17 FEFTLMVVGESGLGKSTLINSLFL   40 (301)
T ss_dssp             -CEEEEEEEETTSSHHHHHHHHHC
T ss_pred             CCEEEEEECCCCCCHHHHHHHHhC
Confidence            446789999999999999999764

>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1

Probab=94.92  E-value=0.016  Score=50.73  Aligned_cols=25  Identities=16%  Similarity=0.287  Sum_probs=22.6

Q ss_pred             CCeEEEEEcCCCCCchHHHHHHHHH
Q 030464           77 RGVHWAFIGSPRAKKHVYAEMLSKL  101 (177)
Q Consensus        77 ~~~~IlIiGpPGSGKSTlA~~LAk~  101 (177)
                      ..++|+|+|+||+||||+...|...
T Consensus       179 ~~~kvaivG~~gvGKSTLln~l~g~  203 (439)
T 1mky_A          179 DAIKVAIVGRPNVGKSTLFNAILNK  203 (439)
T ss_dssp             SCEEEEEECSTTSSHHHHHHHHHTS
T ss_pred             cCceEEEECCCCCCHHHHHHHHhCC
Confidence            5689999999999999999999764

>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*

Probab=94.91  E-value=0.015  Score=48.50  Aligned_cols=25  Identities=12%  Similarity=0.181  Sum_probs=21.8

Q ss_pred             CCeEEEEEcCCCCCchHHHHHHHHH
Q 030464           77 RGVHWAFIGSPRAKKHVYAEMLSKL  101 (177)
Q Consensus        77 ~~~~IlIiGpPGSGKSTlA~~LAk~  101 (177)
                      ..++|+|+|.||+|||++..++...
T Consensus         2 ~~~KI~lvG~~~vGKSSLi~~l~~~   26 (307)
T 3r7w_A            2 LGSKLLLMGRSGSGKSSMRSIIFSN   26 (307)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHSC
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhC
Confidence            4578999999999999999997654

>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1

Probab=94.90  E-value=0.01  Score=53.65  Aligned_cols=26  Identities=8%  Similarity=0.121  Sum_probs=22.8

Q ss_pred             CCeEEEEEcCCCCCchHHHHHHHHHh
Q 030464           77 RGVHWAFIGSPRAKKHVYAEMLSKLL  102 (177)
Q Consensus        77 ~~~~IlIiGpPGSGKSTlA~~LAk~l  102 (177)
                      .+..++|+||+||||||+.+.|+..+
T Consensus       259 ~g~~i~I~GptGSGKTTlL~aL~~~i  284 (511)
T 2oap_1          259 HKFSAIVVGETASGKTTTLNAIMMFI  284 (511)
T ss_dssp             TTCCEEEEESTTSSHHHHHHHHGGGS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence            56679999999999999999997765

>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*

Probab=94.90  E-value=0.0077  Score=51.01  Aligned_cols=35  Identities=17%  Similarity=0.180  Sum_probs=27.5

Q ss_pred             cCccCcccCCCeEEEEEcCCCCCchHHHHHHHHHh
Q 030464           68 PDTEGRERRRGVHWAFIGSPRAKKHVYAEMLSKLL  102 (177)
Q Consensus        68 ~~~~~~~~~~~~~IlIiGpPGSGKSTlA~~LAk~l  102 (177)
                      ++.......++-.+.|+||.||||||+.+.|+..+
T Consensus        70 L~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~  104 (306)
T 3nh6_A           70 LQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFY  104 (306)
T ss_dssp             EEEEEEEECTTCEEEEESSSCHHHHHHHHHHTTSS
T ss_pred             eeeeeEEEcCCCEEEEECCCCchHHHHHHHHHcCC
Confidence            33444455677889999999999999999987654

>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}

Probab=94.90  E-value=0.015  Score=48.61  Aligned_cols=26  Identities=15%  Similarity=0.059  Sum_probs=22.5

Q ss_pred             CCCeEEEEEcCCCCCchHHHHHHHHHh
Q 030464           76 RRGVHWAFIGSPRAKKHVYAEMLSKLL  102 (177)
Q Consensus        76 ~~~~~IlIiGpPGSGKSTlA~~LAk~l  102 (177)
                      ..+..+.|+|++|+||||+.+.|+ ..
T Consensus       163 l~G~i~~l~G~sG~GKSTLln~l~-~~  188 (302)
T 2yv5_A          163 LEGFICILAGPSGVGKSSILSRLT-GE  188 (302)
T ss_dssp             TTTCEEEEECSTTSSHHHHHHHHH-SC
T ss_pred             ccCcEEEEECCCCCCHHHHHHHHH-Hh
Confidence            356788999999999999999998 54

>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1

Probab=94.89  E-value=0.015  Score=50.33  Aligned_cols=47  Identities=15%  Similarity=-0.012  Sum_probs=32.7

Q ss_pred             ccccCccCc--ccCCCeEEEEEcCCCCCchHHHHHHHHHh-----CCCeeeCch
Q 030464           65 VTLPDTEGR--ERRRGVHWAFIGSPRAKKHVYAEMLSKLL-----EVPRISMSS  111 (177)
Q Consensus        65 ~~~~~~~~~--~~~~~~~IlIiGpPGSGKSTlA~~LAk~l-----gl~~Is~~d  111 (177)
                      .+.++....  ...++-.++|.|+||+|||++|..++...     .+.+|+...
T Consensus        59 ~~~LD~~Lg~GGl~~G~li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~~E~  112 (366)
T 1xp8_A           59 SLSLDLALGVGGIPRGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAEH  112 (366)
T ss_dssp             CHHHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred             CHHHHHHhCCCCccCCcEEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEECCC
Confidence            444444332  33466678889999999999999987653     456777764

>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1

Probab=94.88  E-value=0.015  Score=48.77  Aligned_cols=25  Identities=12%  Similarity=-0.121  Sum_probs=21.3

Q ss_pred             CCeEEEEEcCCCCCchHHHHHHHHH
Q 030464           77 RGVHWAFIGSPRAKKHVYAEMLSKL  101 (177)
Q Consensus        77 ~~~~IlIiGpPGSGKSTlA~~LAk~  101 (177)
                      +...++|+|+.||||||+.+.|...
T Consensus         3 ~i~v~~i~G~~GaGKTTll~~l~~~   27 (318)
T 1nij_A            3 PIAVTLLTGFLGAGKTTLLRHILNE   27 (318)
T ss_dssp             CEEEEEEEESSSSSCHHHHHHHHHS
T ss_pred             cccEEEEEecCCCCHHHHHHHHHhh
Confidence            3456789999999999999999864

>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14

Probab=94.87  E-value=0.021  Score=45.00  Aligned_cols=27  Identities=11%  Similarity=-0.082  Sum_probs=23.3

Q ss_pred             CCCeEEEEEcCCCCCchHHHHHHHHHh
Q 030464           76 RRGVHWAFIGSPRAKKHVYAEMLSKLL  102 (177)
Q Consensus        76 ~~~~~IlIiGpPGSGKSTlA~~LAk~l  102 (177)
                      .++..++++|+.||||||.+-.++.++
T Consensus         6 ~~g~i~v~~G~mgsGKTT~ll~~a~r~   32 (191)
T 1xx6_A            6 DHGWVEVIVGPMYSGKSEELIRRIRRA   32 (191)
T ss_dssp             TCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCCEEEEEECCCCCcHHHHHHHHHHHH
Confidence            345688999999999999999998876

>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=94.87  E-value=0.015  Score=51.70  Aligned_cols=26  Identities=15%  Similarity=0.190  Sum_probs=21.4

Q ss_pred             CCCeE--EEEEcCCCCCchHHHHHHHHH
Q 030464           76 RRGVH--WAFIGSPRAKKHVYAEMLSKL  101 (177)
Q Consensus        76 ~~~~~--IlIiGpPGSGKSTlA~~LAk~  101 (177)
                      .++-.  +.|+|++|+||||+.+.|+..
T Consensus        38 ~~Gei~~vaLvG~nGaGKSTLln~L~G~   65 (427)
T 2qag_B           38 SQGFCFNILCVGETGLGKSTLMDTLFNT   65 (427)
T ss_dssp             C-CCEEEEEEECSTTSSSHHHHHHHHTS
T ss_pred             cCCCeeEEEEECCCCCCHHHHHHHHhCc
Confidence            34545  999999999999999999764

>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}

Probab=94.82  E-value=0.019  Score=48.10  Aligned_cols=48  Identities=19%  Similarity=0.081  Sum_probs=34.8

Q ss_pred             CCccccCccCcccCCCeEEEEEcCCCCCchHHHHHHHHHh-----CCCeeeCc
Q 030464           63 RSVTLPDTEGRERRRGVHWAFIGSPRAKKHVYAEMLSKLL-----EVPRISMS  110 (177)
Q Consensus        63 ~~~~~~~~~~~~~~~~~~IlIiGpPGSGKSTlA~~LAk~l-----gl~~Is~~  110 (177)
                      ...+.++.-.....++-.++|.|+||+|||++|..++...     .+.+|++.
T Consensus        53 TG~~~LD~~lgGl~~G~l~li~G~pG~GKTtl~l~ia~~~a~~g~~vl~~slE  105 (315)
T 3bh0_A           53 SGFTELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSLE  105 (315)
T ss_dssp             CSCHHHHHHHSSBCTTCEEEEECCTTSSHHHHHHHHHHHHHTTTCEEEEEESS
T ss_pred             CChHHHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEECC
Confidence            3455566554445677889999999999999999998653     24466654

>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C

Probab=94.82  E-value=0.016  Score=50.44  Aligned_cols=35  Identities=17%  Similarity=0.165  Sum_probs=26.8

Q ss_pred             cCccCcccCCCeEEEEEcCCCCCchHHHHHHHHHh
Q 030464           68 PDTEGRERRRGVHWAFIGSPRAKKHVYAEMLSKLL  102 (177)
Q Consensus        68 ~~~~~~~~~~~~~IlIiGpPGSGKSTlA~~LAk~l  102 (177)
                      ++.......++-.+.|+||.||||||+.+.|+-.+
T Consensus        44 L~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~   78 (366)
T 3tui_C           44 LNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLE   78 (366)
T ss_dssp             EEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcCC
Confidence            33334445677789999999999999999987643

>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*

Probab=94.81  E-value=0.016  Score=47.01  Aligned_cols=26  Identities=19%  Similarity=0.041  Sum_probs=22.8

Q ss_pred             CCCeEEEEEcCCCCCchHHHHHHHHH
Q 030464           76 RRGVHWAFIGSPRAKKHVYAEMLSKL  101 (177)
Q Consensus        76 ~~~~~IlIiGpPGSGKSTlA~~LAk~  101 (177)
                      ...++|+|+|.||+||||+..+|...
T Consensus        24 ~~~~~i~vvG~~~~GKSSLln~l~g~   49 (299)
T 2aka_B           24 LDLPQIAVVGGQSAGKSSVLENFVGR   49 (299)
T ss_dssp             CCCCEEEEEEBTTSCHHHHHHHHHTS
T ss_pred             CCCCeEEEEeCCCCCHHHHHHHHHCC
Confidence            35679999999999999999999764

>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*

Probab=94.80  E-value=0.017  Score=52.73  Aligned_cols=25  Identities=16%  Similarity=0.203  Sum_probs=21.5

Q ss_pred             CeEEEEEcCCCCCchHHHHHHHHHh
Q 030464           78 GVHWAFIGSPRAKKHVYAEMLSKLL  102 (177)
Q Consensus        78 ~~~IlIiGpPGSGKSTlA~~LAk~l  102 (177)
                      ...++|.|+||+||||++..|...+
T Consensus       204 ~~~~~I~G~pGTGKTt~i~~l~~~l  228 (574)
T 3e1s_A          204 HRLVVLTGGPGTGKSTTTKAVADLA  228 (574)
T ss_dssp             CSEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CCEEEEEcCCCCCHHHHHHHHHHHH
Confidence            4578899999999999999987754

>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12

Probab=94.79  E-value=0.01  Score=51.16  Aligned_cols=30  Identities=17%  Similarity=0.362  Sum_probs=24.7

Q ss_pred             cccCCCeEEEEEcCCCCCchHHHHHHHHHh
Q 030464           73 RERRRGVHWAFIGSPRAKKHVYAEMLSKLL  102 (177)
Q Consensus        73 ~~~~~~~~IlIiGpPGSGKSTlA~~LAk~l  102 (177)
                      ....++-.+.|+||.||||||+.+.|+-..
T Consensus        21 l~i~~Ge~~~llGpnGsGKSTLLr~iaGl~   50 (348)
T 3d31_A           21 LKVESGEYFVILGPTGAGKTLFLELIAGFH   50 (348)
T ss_dssp             EEECTTCEEEEECCCTHHHHHHHHHHHTSS
T ss_pred             EEEcCCCEEEEECCCCccHHHHHHHHHcCC
Confidence            344567789999999999999999998643

>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}

Probab=94.78  E-value=0.016  Score=50.76  Aligned_cols=34  Identities=12%  Similarity=0.138  Sum_probs=26.5

Q ss_pred             cCccCcccCCCeEEEEEcCCCCCchHHHHHHHHH
Q 030464           68 PDTEGRERRRGVHWAFIGSPRAKKHVYAEMLSKL  101 (177)
Q Consensus        68 ~~~~~~~~~~~~~IlIiGpPGSGKSTlA~~LAk~  101 (177)
                      ++.......++-.+.|+||.||||||+.+.|+..
T Consensus        37 L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl   70 (390)
T 3gd7_A           37 LENISFSISPGQRVGLLGRTGSGKSTLLSAFLRL   70 (390)
T ss_dssp             EEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTC
T ss_pred             eeceeEEEcCCCEEEEECCCCChHHHHHHHHhCC
Confidence            3333344567778999999999999999999853

>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A

Probab=94.72  E-value=0.02  Score=50.28  Aligned_cols=46  Identities=17%  Similarity=0.133  Sum_probs=31.8

Q ss_pred             ccccCccCcccCCCeEEEEEcCCCCCchHHHHHHHHHh----C--CCeeeCc
Q 030464           65 VTLPDTEGRERRRGVHWAFIGSPRAKKHVYAEMLSKLL----E--VPRISMS  110 (177)
Q Consensus        65 ~~~~~~~~~~~~~~~~IlIiGpPGSGKSTlA~~LAk~l----g--l~~Is~~  110 (177)
                      .+.++.-.....++-.++|.|+||+||||++..++...    |  +.+++..
T Consensus       190 ~~~LD~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~E  241 (454)
T 2r6a_A          190 FTELDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSLE  241 (454)
T ss_dssp             CHHHHHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEESS
T ss_pred             cHHHHhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEECC
Confidence            33344443344577789999999999999999987642    4  4466653

>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8

Probab=94.71  E-value=0.014  Score=48.66  Aligned_cols=25  Identities=12%  Similarity=0.084  Sum_probs=21.7

Q ss_pred             CCeEEEEEcCCCCCchHHHHHHHHH
Q 030464           77 RGVHWAFIGSPRAKKHVYAEMLSKL  101 (177)
Q Consensus        77 ~~~~IlIiGpPGSGKSTlA~~LAk~  101 (177)
                      .+..+.|+|++||||||+.+.|+..
T Consensus       168 ~geiv~l~G~sG~GKSTll~~l~g~  192 (301)
T 1u0l_A          168 KGKISTMAGLSGVGKSSLLNAINPG  192 (301)
T ss_dssp             SSSEEEEECSTTSSHHHHHHHHSTT
T ss_pred             cCCeEEEECCCCCcHHHHHHHhccc
Confidence            5668899999999999999998653

>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*

Probab=94.68  E-value=0.017  Score=50.90  Aligned_cols=24  Identities=17%  Similarity=0.196  Sum_probs=21.4

Q ss_pred             CCeEEEEEcCCCCCchHHHHHHHH
Q 030464           77 RGVHWAFIGSPRAKKHVYAEMLSK  100 (177)
Q Consensus        77 ~~~~IlIiGpPGSGKSTlA~~LAk  100 (177)
                      +...+.|+|++|+||||+.+.|+.
T Consensus        68 ~~~~valvG~nGaGKSTLln~L~G   91 (413)
T 1tq4_A           68 SVLNVAVTGETGSGKSSFINTLRG   91 (413)
T ss_dssp             CCEEEEEEECTTSSHHHHHHHHHT
T ss_pred             CCeEEEEECCCCCcHHHHHHHHhC
Confidence            445899999999999999999987

>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*

Probab=94.53  E-value=0.019  Score=46.55  Aligned_cols=25  Identities=8%  Similarity=0.025  Sum_probs=22.4

Q ss_pred             CCeEEEEEcCCCCCchHHHHHHHHH
Q 030464           77 RGVHWAFIGSPRAKKHVYAEMLSKL  101 (177)
Q Consensus        77 ~~~~IlIiGpPGSGKSTlA~~LAk~  101 (177)
                      +.++|+|+|.+|+||||+...|...
T Consensus        38 ~~~~I~vvG~~g~GKSSLin~l~~~   62 (270)
T 1h65_A           38 NSLTILVMGKGGVGKSSTVNSIIGE   62 (270)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHTS
T ss_pred             CCeEEEEECCCCCCHHHHHHHHhCC
Confidence            5689999999999999999999754

>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*

Probab=94.50  E-value=0.028  Score=46.03  Aligned_cols=26  Identities=15%  Similarity=0.028  Sum_probs=22.7

Q ss_pred             CCCeEEEEEcCCCCCchHHHHHHHHH
Q 030464           76 RRGVHWAFIGSPRAKKHVYAEMLSKL  101 (177)
Q Consensus        76 ~~~~~IlIiGpPGSGKSTlA~~LAk~  101 (177)
                      ...++|+|+|.||+||||+..+|...
T Consensus        22 ~~~~~I~vvG~~~~GKSTlln~l~g~   47 (315)
T 1jwy_B           22 LDLPQIVVVGSQSSGKSSVLENIVGR   47 (315)
T ss_dssp             TCCCEEEEEECSSSSHHHHHHHHHTS
T ss_pred             CCCCeEEEEcCCCCCHHHHHHHHHCC
Confidence            45678999999999999999999754

>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*

Probab=94.50  E-value=0.024  Score=46.22  Aligned_cols=26  Identities=8%  Similarity=0.064  Sum_probs=22.8

Q ss_pred             CCCeEEEEEcCCCCCchHHHHHHHHH
Q 030464           76 RRGVHWAFIGSPRAKKHVYAEMLSKL  101 (177)
Q Consensus        76 ~~~~~IlIiGpPGSGKSTlA~~LAk~  101 (177)
                      .+.++|+|+|.+|+|||++..++...
T Consensus       153 ~~~~~i~i~G~~~~GKssli~~~~~~  178 (332)
T 2wkq_A          153 KELIKCVVVGDGAVGKTCLLISYTTN  178 (332)
T ss_dssp             TTCEEEEEEESTTSSHHHHHHHHHHS
T ss_pred             cceeEEEEECCCCCChHHHHHHHHhC
Confidence            45689999999999999999998753

>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*

Probab=94.48  E-value=0.021  Score=46.21  Aligned_cols=26  Identities=12%  Similarity=0.009  Sum_probs=23.1

Q ss_pred             CCCeEEEEEcCCCCCchHHHHHHHHH
Q 030464           76 RRGVHWAFIGSPRAKKHVYAEMLSKL  101 (177)
Q Consensus        76 ~~~~~IlIiGpPGSGKSTlA~~LAk~  101 (177)
                      .+.++|+|+|.+|+||||+...|...
T Consensus        34 ~~~~~I~lvG~~g~GKSSLin~l~~~   59 (262)
T 3def_A           34 MNSMTVLVLGKGGVGKSSTVNSLIGE   59 (262)
T ss_dssp             CCEEEEEEEECTTSSHHHHHHHHHTS
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHhCC
Confidence            36789999999999999999999764

>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*

Probab=94.48  E-value=0.011  Score=51.08  Aligned_cols=31  Identities=16%  Similarity=0.336  Sum_probs=25.2

Q ss_pred             CcccCCCeEEEEEcCCCCCchHHHHHHHHHh
Q 030464           72 GRERRRGVHWAFIGSPRAKKHVYAEMLSKLL  102 (177)
Q Consensus        72 ~~~~~~~~~IlIiGpPGSGKSTlA~~LAk~l  102 (177)
                      .....++-.+.|+||.||||||+.+.|+-..
T Consensus        25 sl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~   55 (353)
T 1oxx_K           25 NINIENGERFGILGPSGAGKTTFMRIIAGLD   55 (353)
T ss_dssp             EEEECTTCEEEEECSCHHHHHHHHHHHHTSS
T ss_pred             EEEECCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence            3344567789999999999999999998643

>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*

Probab=94.47  E-value=0.023  Score=50.90  Aligned_cols=29  Identities=7%  Similarity=-0.065  Sum_probs=24.5

Q ss_pred             ccCCCeEEEEEcCCCCCchHHHHHHHHHh
Q 030464           74 ERRRGVHWAFIGSPRAKKHVYAEMLSKLL  102 (177)
Q Consensus        74 ~~~~~~~IlIiGpPGSGKSTlA~~LAk~l  102 (177)
                      ...++-.++|+|+||+||||+++.++...
T Consensus       277 ~i~~G~i~~i~G~~GsGKSTLl~~l~g~~  305 (525)
T 1tf7_A          277 GFFKDSIILATGATGTGKTLLVSRFVENA  305 (525)
T ss_dssp             SEESSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred             CCCCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence            34577789999999999999999998653

>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2

Probab=94.47  E-value=0.023  Score=49.74  Aligned_cols=27  Identities=15%  Similarity=0.345  Sum_probs=23.9

Q ss_pred             ccCCCeEEEEEcCCCCCchHHHHHHHH
Q 030464           74 ERRRGVHWAFIGSPRAKKHVYAEMLSK  100 (177)
Q Consensus        74 ~~~~~~~IlIiGpPGSGKSTlA~~LAk  100 (177)
                      ...++.+|.|+|+||+||||+.+.|..
T Consensus        16 ~v~~g~~vgiVG~pnaGKSTL~n~Ltg   42 (392)
T 1ni3_A           16 RPGNNLKTGIVGMPNVGKSTFFRAITK   42 (392)
T ss_dssp             SSSSCCEEEEEECSSSSHHHHHHHHHH
T ss_pred             cccCCCEEEEECCCCCCHHHHHHHHHC
Confidence            335678999999999999999999987

>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A

Probab=94.45  E-value=0.026  Score=49.95  Aligned_cols=26  Identities=19%  Similarity=0.257  Sum_probs=22.8

Q ss_pred             CCeEEEEEcCCCCCchHHHHHHHHHh
Q 030464           77 RGVHWAFIGSPRAKKHVYAEMLSKLL  102 (177)
Q Consensus        77 ~~~~IlIiGpPGSGKSTlA~~LAk~l  102 (177)
                      ++..|+|+|++|+||||++..||..+
T Consensus        97 ~~~vi~i~G~~GsGKTT~~~~LA~~l  122 (425)
T 2ffh_A           97 DRNLWFLVGLQGSGKTTTAAKLALYY  122 (425)
T ss_dssp             SSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            56678888999999999999998765

>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}

Probab=94.43  E-value=0.023  Score=48.28  Aligned_cols=26  Identities=15%  Similarity=0.121  Sum_probs=22.8

Q ss_pred             CCCeEEEEEcCCCCCchHHHHHHHHH
Q 030464           76 RRGVHWAFIGSPRAKKHVYAEMLSKL  101 (177)
Q Consensus        76 ~~~~~IlIiGpPGSGKSTlA~~LAk~  101 (177)
                      ....+|+|+|+||+||||+...|+..
T Consensus       165 ~~~~~v~lvG~~gvGKSTLin~L~~~  190 (357)
T 2e87_A          165 LEIPTVVIAGHPNVGKSTLLKALTTA  190 (357)
T ss_dssp             SSSCEEEEECSTTSSHHHHHHHHCSS
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCC
Confidence            36679999999999999999999764

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=94.42  E-value=0.023  Score=51.58  Aligned_cols=30  Identities=10%  Similarity=0.159  Sum_probs=25.2

Q ss_pred             cccCCCeEEEEEcCCCCCchHHHHHHHHHh
Q 030464           73 RERRRGVHWAFIGSPRAKKHVYAEMLSKLL  102 (177)
Q Consensus        73 ~~~~~~~~IlIiGpPGSGKSTlA~~LAk~l  102 (177)
                      +.+.++-.+.|+||.||||||+.+.|+..+
T Consensus        20 ~~~~~Gei~gLiGpNGaGKSTLlkiL~Gl~   49 (538)
T 3ozx_A           20 PTPKNNTILGVLGKNGVGKTTVLKILAGEI   49 (538)
T ss_dssp             CCCCTTEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             CCCCCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence            345677889999999999999999997643

>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}

Probab=94.37  E-value=0.019  Score=48.38  Aligned_cols=25  Identities=16%  Similarity=0.161  Sum_probs=22.4

Q ss_pred             CCCeEEEEEcCCCCCchHHHHHHHH
Q 030464           76 RRGVHWAFIGSPRAKKHVYAEMLSK  100 (177)
Q Consensus        76 ~~~~~IlIiGpPGSGKSTlA~~LAk  100 (177)
                      .+.++|+|+|.+|+|||++..+|..
T Consensus       163 ~~~~kI~ivG~~~vGKSsLl~~l~~  187 (329)
T 3o47_A          163 KKEMRILMVGLDAAGKTTILYKLKL  187 (329)
T ss_dssp             CCSEEEEEEESTTSSHHHHHHHTCS
T ss_pred             cCcceEEEECCCCccHHHHHHHHhC
Confidence            5678999999999999999998864

>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}

Probab=94.35  E-value=0.022  Score=51.71  Aligned_cols=35  Identities=14%  Similarity=0.226  Sum_probs=27.7

Q ss_pred             cCccCcccCCCeEEEEEcCCCCCchHHHHHHHHHh
Q 030464           68 PDTEGRERRRGVHWAFIGSPRAKKHVYAEMLSKLL  102 (177)
Q Consensus        68 ~~~~~~~~~~~~~IlIiGpPGSGKSTlA~~LAk~l  102 (177)
                      ++.-.....++-.+.|+||.||||||+.+.|+..+
T Consensus       359 l~~i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~~  393 (582)
T 3b5x_A          359 LSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFY  393 (582)
T ss_pred             cccceEEECCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            34444445677889999999999999999998765

>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=94.34  E-value=0.021  Score=52.08  Aligned_cols=35  Identities=14%  Similarity=0.202  Sum_probs=27.7

Q ss_pred             cCccCcccCCCeEEEEEcCCCCCchHHHHHHHHHh
Q 030464           68 PDTEGRERRRGVHWAFIGSPRAKKHVYAEMLSKLL  102 (177)
Q Consensus        68 ~~~~~~~~~~~~~IlIiGpPGSGKSTlA~~LAk~l  102 (177)
                      ++.-.....++-.+.|+||.||||||+.+.|+..+
T Consensus       371 l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~  405 (598)
T 3qf4_B          371 LKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFY  405 (598)
T ss_dssp             CCSEEEECCTTCEEEEECCTTSSTTHHHHHHTTSS
T ss_pred             ccceEEEEcCCCEEEEECCCCCcHHHHHHHHhcCc
Confidence            34444455677899999999999999999997655

>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*

Probab=94.34  E-value=0.021  Score=46.52  Aligned_cols=23  Identities=13%  Similarity=0.066  Sum_probs=20.2

Q ss_pred             CCeEEEEEcCCCCCchHHHHHHH
Q 030464           77 RGVHWAFIGSPRAKKHVYAEMLS   99 (177)
Q Consensus        77 ~~~~IlIiGpPGSGKSTlA~~LA   99 (177)
                      ...+|+|+|.+|+||||+...|.
T Consensus         7 ~~~~I~vvG~~g~GKSTLin~L~   29 (274)
T 3t5d_A            7 FEFTLMVVGESGLGKSTLINSLF   29 (274)
T ss_dssp             CEEEEEEEECTTSSHHHHHHHHS
T ss_pred             cEEEEEEECCCCCCHHHHHHHHh
Confidence            45789999999999999998863

>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2

Probab=94.32  E-value=0.032  Score=47.66  Aligned_cols=33  Identities=21%  Similarity=0.041  Sum_probs=27.4

Q ss_pred             CCeEEEEEcCCCCCchHHHHHHHHHhCCCeeeCc
Q 030464           77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMS  110 (177)
Q Consensus        77 ~~~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~  110 (177)
                      .+.-|+|+|++|+||||+|..|.++ |...++-+
T Consensus       143 ~g~~vl~~G~sG~GKSt~a~~l~~~-g~~lv~dD  175 (314)
T 1ko7_A          143 YGVGVLITGDSGIGKSETALELIKR-GHRLVADD  175 (314)
T ss_dssp             TTEEEEEEESTTSSHHHHHHHHHHT-TCEEEESS
T ss_pred             CCEEEEEEeCCCCCHHHHHHHHHhc-CCceecCC
Confidence            4678999999999999999999775 77777643

>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A

Probab=94.30  E-value=0.024  Score=48.42  Aligned_cols=25  Identities=28%  Similarity=0.457  Sum_probs=21.5

Q ss_pred             CCeEEEEEcCCCCCchHHHHHHHHH
Q 030464           77 RGVHWAFIGSPRAKKHVYAEMLSKL  101 (177)
Q Consensus        77 ~~~~IlIiGpPGSGKSTlA~~LAk~  101 (177)
                      ...+++|+|++||||||+++.|...
T Consensus        34 ~~~~~~i~G~~G~GKs~~~~~~~~~   58 (392)
T 4ag6_A           34 TNSNWTILAKPGAGKSFTAKMLLLR   58 (392)
T ss_dssp             CCCCEEEECCTTSSHHHHHHHHHHH
T ss_pred             ccCceEEEcCCCCCHHHHHHHHHHH
Confidence            4567899999999999999988654

>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*

Probab=94.25  E-value=0.028  Score=48.26  Aligned_cols=31  Identities=10%  Similarity=0.018  Sum_probs=26.6

Q ss_pred             cccCCCeEEEEEcCCCCCchHHHHHHHHHhC
Q 030464           73 RERRRGVHWAFIGSPRAKKHVYAEMLSKLLE  103 (177)
Q Consensus        73 ~~~~~~~~IlIiGpPGSGKSTlA~~LAk~lg  103 (177)
                      ....++-++.|+|++|+||||+.+.|+....
T Consensus        66 l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~   96 (347)
T 2obl_A           66 LTCGIGQRIGIFAGSGVGKSTLLGMICNGAS   96 (347)
T ss_dssp             SCEETTCEEEEEECTTSSHHHHHHHHHHHSC
T ss_pred             eeecCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence            3346788999999999999999999998764

>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}

Probab=94.24  E-value=0.026  Score=48.74  Aligned_cols=35  Identities=9%  Similarity=0.092  Sum_probs=25.8

Q ss_pred             CCCeEEEEEcCCCCCchHHHHHHHHHh-----C--CCeeeCch
Q 030464           76 RRGVHWAFIGSPRAKKHVYAEMLSKLL-----E--VPRISMSS  111 (177)
Q Consensus        76 ~~~~~IlIiGpPGSGKSTlA~~LAk~l-----g--l~~Is~~d  111 (177)
                      .++ ++.|.|+||+||||+|-.++...     |  +.+|+..+
T Consensus        27 ~~G-iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~   68 (333)
T 3io5_A           27 QSG-LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEF   68 (333)
T ss_dssp             CSE-EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSC
T ss_pred             cCC-eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccc
Confidence            355 68999999999999998876542     2  44666654

>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1

Probab=94.21  E-value=0.026  Score=47.16  Aligned_cols=26  Identities=19%  Similarity=0.202  Sum_probs=22.0

Q ss_pred             CCCeEEEEEcCCCCCchHHHHHHHHH
Q 030464           76 RRGVHWAFIGSPRAKKHVYAEMLSKL  101 (177)
Q Consensus        76 ~~~~~IlIiGpPGSGKSTlA~~LAk~  101 (177)
                      .+...|+|+|.||+||||+..+|...
T Consensus         5 ~~~g~V~ivG~~nvGKSTLln~l~g~   30 (301)
T 1wf3_A            5 TYSGFVAIVGKPNVGKSTLLNNLLGV   30 (301)
T ss_dssp             CEEEEEEEECSTTSSHHHHHHHHHTS
T ss_pred             ccCCEEEEECCCCCCHHHHHHHHhCC
Confidence            35567999999999999999999753

>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=94.10  E-value=0.024  Score=50.04  Aligned_cols=25  Identities=12%  Similarity=0.016  Sum_probs=21.4

Q ss_pred             CCeEEEEEcCCCCCchHHHHHHHHH
Q 030464           77 RGVHWAFIGSPRAKKHVYAEMLSKL  101 (177)
Q Consensus        77 ~~~~IlIiGpPGSGKSTlA~~LAk~  101 (177)
                      ....|+|+|++|+||||+.+.|+..
T Consensus        30 vsf~I~lvG~sGaGKSTLln~L~g~   54 (418)
T 2qag_C           30 FEFTLMVVGESGLGKSTLINSLFLT   54 (418)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHTTC
T ss_pred             CCEEEEEECCCCCcHHHHHHHHhCC
Confidence            3456899999999999999999764

>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}

Probab=94.08  E-value=0.031  Score=49.44  Aligned_cols=31  Identities=16%  Similarity=0.231  Sum_probs=26.7

Q ss_pred             cccCCCeEEEEEcCCCCCchHHHHHHHHHhC
Q 030464           73 RERRRGVHWAFIGSPRAKKHVYAEMLSKLLE  103 (177)
Q Consensus        73 ~~~~~~~~IlIiGpPGSGKSTlA~~LAk~lg  103 (177)
                      ....++-++.|+|++||||||+.+.|+....
T Consensus       152 l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~  182 (438)
T 2dpy_A          152 LTVGRGQRMGLFAGSGVGKSVLLGMMARYTR  182 (438)
T ss_dssp             SCCBTTCEEEEEECTTSSHHHHHHHHHHHSC
T ss_pred             EEecCCCEEEEECCCCCCHHHHHHHHhcccC
Confidence            3446788999999999999999999998764

>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A

Probab=94.01  E-value=0.026  Score=48.94  Aligned_cols=23  Identities=17%  Similarity=0.325  Sum_probs=20.9

Q ss_pred             eEEEEEcCCCCCchHHHHHHHHH
Q 030464           79 VHWAFIGSPRAKKHVYAEMLSKL  101 (177)
Q Consensus        79 ~~IlIiGpPGSGKSTlA~~LAk~  101 (177)
                      ++|.|+|.||+||||+...|...
T Consensus         2 ~~v~IVG~pnvGKSTL~n~L~~~   24 (368)
T 2dby_A            2 LAVGIVGLPNVGKSTLFNALTRA   24 (368)
T ss_dssp             CSEEEECCSSSSHHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHhCC
Confidence            57899999999999999999875

>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}

Probab=93.95  E-value=0.035  Score=48.60  Aligned_cols=46  Identities=15%  Similarity=0.029  Sum_probs=31.7

Q ss_pred             ccccCccCcccCCCeEEEEEcCCCCCchHHHHHHHHHh----C--CCeeeCc
Q 030464           65 VTLPDTEGRERRRGVHWAFIGSPRAKKHVYAEMLSKLL----E--VPRISMS  110 (177)
Q Consensus        65 ~~~~~~~~~~~~~~~~IlIiGpPGSGKSTlA~~LAk~l----g--l~~Is~~  110 (177)
                      .+.++.......++-.++|.|+||+|||++|..++...    |  +.++++.
T Consensus       187 ~~~LD~~lgGl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~slE  238 (444)
T 2q6t_A          187 FKELDQLIGTLGPGSLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYSLE  238 (444)
T ss_dssp             CHHHHHHHCCCCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEESS
T ss_pred             CHhhhhhcCCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEECC
Confidence            33444433334567789999999999999999987642    3  4466664

>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}

Probab=93.93  E-value=0.035  Score=49.68  Aligned_cols=28  Identities=18%  Similarity=0.095  Sum_probs=24.1

Q ss_pred             ccCCCeEEEEEcCCCCCchHHHHHHHHH
Q 030464           74 ERRRGVHWAFIGSPRAKKHVYAEMLSKL  101 (177)
Q Consensus        74 ~~~~~~~IlIiGpPGSGKSTlA~~LAk~  101 (177)
                      .+.+.++|+|+|.||+||||+..+|...
T Consensus        37 ~~~~~~kV~lvG~~~vGKSSLl~~l~~~   64 (535)
T 3dpu_A           37 VHLQEIKVHLIGDGMAGKTSLLKQLIGE   64 (535)
T ss_dssp             BCCCEEEEEEESSSCSSHHHHHHHHHC-
T ss_pred             ccccceEEEEECCCCCCHHHHHHHHhcC
Confidence            3567799999999999999999999764

>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*

Probab=93.93  E-value=0.028  Score=49.33  Aligned_cols=25  Identities=16%  Similarity=0.157  Sum_probs=21.1

Q ss_pred             CCCeEEEEEcCCCCCchHHHHHHHH
Q 030464           76 RRGVHWAFIGSPRAKKHVYAEMLSK  100 (177)
Q Consensus        76 ~~~~~IlIiGpPGSGKSTlA~~LAk  100 (177)
                      ++.++|+|+|.||+||||+..+|..
T Consensus        21 m~~~~V~lvG~~nvGKSTL~n~l~~   45 (456)
T 4dcu_A           21 MGKPVVAIVGRPNVGKSTIFNRIAG   45 (456)
T ss_dssp             --CCEEEEECSSSSSHHHHHHHHEE
T ss_pred             cCCCEEEEECCCCCcHHHHHHHHhC
Confidence            4567899999999999999999865

>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A

Probab=93.92  E-value=0.019  Score=52.13  Aligned_cols=34  Identities=15%  Similarity=0.247  Sum_probs=27.0

Q ss_pred             CccCcccCCCeEEEEEcCCCCCchHHHHHHHHHh
Q 030464           69 DTEGRERRRGVHWAFIGSPRAKKHVYAEMLSKLL  102 (177)
Q Consensus        69 ~~~~~~~~~~~~IlIiGpPGSGKSTlA~~LAk~l  102 (177)
                      +.-.....++-.+.|+||.||||||+.+.|+..+
T Consensus       360 ~~v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~  393 (582)
T 3b60_A          360 RNINLKIPAGKTVALVGRSGSGKSTIASLITRFY  393 (582)
T ss_dssp             EEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTT
T ss_pred             cceeEEEcCCCEEEEECCCCCCHHHHHHHHhhcc
Confidence            3333444677889999999999999999997765

>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}

Probab=93.88  E-value=0.035  Score=49.43  Aligned_cols=23  Identities=17%  Similarity=0.036  Sum_probs=19.9

Q ss_pred             CeEEEEEcCCCCCchHHHHHHHH
Q 030464           78 GVHWAFIGSPRAKKHVYAEMLSK  100 (177)
Q Consensus        78 ~~~IlIiGpPGSGKSTlA~~LAk  100 (177)
                      ...|+|.|++|+||||+|+.++.
T Consensus       147 ~~~v~I~G~~GiGKTtLa~~~~~  169 (591)
T 1z6t_A          147 PGWVTIHGMAGCGKSVLAAEAVR  169 (591)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHC
T ss_pred             CceEEEEcCCCCCHHHHHHHHHh
Confidence            45688999999999999999864

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=93.85  E-value=0.033  Score=50.42  Aligned_cols=29  Identities=17%  Similarity=0.266  Sum_probs=24.5

Q ss_pred             ccCCCeEEEEEcCCCCCchHHHHHHHHHh
Q 030464           74 ERRRGVHWAFIGSPRAKKHVYAEMLSKLL  102 (177)
Q Consensus        74 ~~~~~~~IlIiGpPGSGKSTlA~~LAk~l  102 (177)
                      ...++-++.|+|+.||||||+.+.|+-.+
T Consensus        43 ~i~~Ge~~~LvG~NGaGKSTLlk~l~Gl~   71 (538)
T 1yqt_A           43 VVKEGMVVGIVGPNGTGKSTAVKILAGQL   71 (538)
T ss_dssp             CCCTTSEEEEECCTTSSHHHHHHHHHTSS
T ss_pred             cCCCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            34577789999999999999999998643

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	177
d1zina1	182	c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bac	1e-07
d1s3ga1	182	c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bac	8e-07
d1zaka1	189	c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Mai	1e-06
d1ak2a1	190	c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Co	1e-06
d2cdna1	181	c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium	4e-06
d1e4va1	179	c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Esc	6e-06
d2ak3a1	189	c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow	1e-05
d1ukza_	196	c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Sac	1e-04
d1akya1	180	c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Bak	0.004

>d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]} Length = 182

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus stearothermophilus [TaxId: 1422]

 Score = 46.8 bits (110), Expect = 1e-07
 Identities = 25/86 (29%), Positives = 43/86 (50%), Gaps = 2/86 (2%)

Query: 83  FIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDII 142
            +G P A K   AE +     +P IS   + R  +   + L  Q    ++RG++V +++ 
Sbjct: 5   LMGLPGAGKGTQAEKIVAAYGIPHISTGDMFRAAMKEGTPLGLQAKQYMDRGDLVPDEVT 64

Query: 143 FGLLSKRLEDGYYRGEIGFILDGLPR 168
            G++ +RL     +   GF+LDG PR
Sbjct: 65  IGIVRERLSKDDCQN--GFLLDGFPR 88

>d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]} Length = 182

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus globisporus [TaxId: 1459]

 Score = 44.9 bits (105), Expect = 8e-07
 Identities = 22/90 (24%), Positives = 44/90 (48%), Gaps = 2/90 (2%)

Query: 83  FIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDII 142
            +G P A K   A+ + +    P IS   + R  +   + L  +  + +++G +V +++ 
Sbjct: 5   LMGLPGAGKGTQADRIVEKYGTPHISTGDMFRAAIQEGTELGVKAKSFMDQGALVPDEVT 64

Query: 143 FGLLSKRLEDGYYRGEIGFILDGLPRSRIQ 172
            G++ +R        + GF+LDG PR+  Q
Sbjct: 65  IGIVRER--LSKSDCDNGFLLDGFPRTVPQ 92

>d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} Length = 189

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Maize (Zea mays) [TaxId: 4577]

 Score = 44.5 bits (104), Expect = 1e-06
 Identities = 22/90 (24%), Positives = 47/90 (52%), Gaps = 1/90 (1%)

Query: 83  FIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDII 142
             G+P + K    E++    ++  IS   ++R +++  S   K+    + +G++V ++I+
Sbjct: 8   ISGAPASGKGTQCELIKTKYQLAHISAGDLLRAEIAAGSENGKRAKEFMEKGQLVPDEIV 67

Query: 143 FGLLSKRLEDGYYRGEIGFILDGLPRSRIQ 172
             ++ +RL     +   G++LDG PRS  Q
Sbjct: 68  VNMVKERLRQPDAQEN-GWLLDGYPRSYSQ 96

>d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]} Length = 190

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]

 Score = 44.2 bits (103), Expect = 1e-06
 Identities = 30/97 (30%), Positives = 53/97 (54%), Gaps = 2/97 (2%)

Query: 77  RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEV 136
           +GV    +G P A K   A  L+K   V  ++   ++R  ++  S L K++   ++ G++
Sbjct: 2   KGVRAVLLGPPGAGKGTQAPKLAKNFCVCHLATGDMLRAMVASGSELGKKLKATMDAGKL 61

Query: 137 VSEDIIFGLLSKRLEDGYYRGEIGFILDGLPRSRIQA 173
           VS++++  L+ K LE    +   GF+LDG PR+  QA
Sbjct: 62  VSDEMVLELIEKNLETPPCKN--GFLLDGFPRTVRQA 96

>d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} Length = 181

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 43.0 bits (100), Expect = 4e-06
 Identities = 28/90 (31%), Positives = 46/90 (51%), Gaps = 2/90 (2%)

Query: 83  FIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDII 142
            +G P A K   A  L++ L +P+IS   + R+++   + L  +    ++ G++V  D+ 
Sbjct: 5   LLGPPGAGKGTQAVKLAEKLGIPQISTGELFRRNIEEGTKLGVEAKRYLDAGDLVPSDLT 64

Query: 143 FGLLSKRLEDGYYRGEIGFILDGLPRSRIQ 172
             L+  RL +       GFILDG PRS  Q
Sbjct: 65  NELVDDRLNN--PDAANGFILDGYPRSVEQ 92

>d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]} Length = 179

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Escherichia coli [TaxId: 562]

 Score = 42.2 bits (98), Expect = 6e-06
 Identities = 17/67 (25%), Positives = 39/67 (58%)

Query: 83  FIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDII 142
            +G+P A K   A+ + +   +P+IS   ++R  +   S L KQ  + ++ G++V+++++
Sbjct: 5   LLGAPVAGKGTQAQFIMEKYGIPQISTGDMLRAAVKSGSELGKQAKDIMDAGKLVTDELV 64

Query: 143 FGLLSKR 149
             L+ +R
Sbjct: 65  IALVKER 71

>d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]} Length = 189

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]

 Score = 41.4 bits (96), Expect = 1e-05
 Identities = 19/97 (19%), Positives = 48/97 (49%), Gaps = 3/97 (3%)

Query: 77  RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEV 136
           R +  A +G+P + K   +  ++K  E+  +S   ++R ++   + +       +++G++
Sbjct: 5   RLLRAAIMGAPGSGKGTVSSRITKHFELKHLSSGDLLRDNMLRGTEIGVLAKTFIDQGKL 64

Query: 137 VSEDIIFGLLSKRLEDGYYRGEIGFILDGLPRSRIQA 173
           + +D++       L +     +  ++LDG PR+  QA
Sbjct: 65  IPDDVMT---RLVLHELKNLTQYNWLLDGFPRTLPQA 98

>d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 196

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Uridylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 38.8 bits (89), Expect = 1e-04
 Identities = 25/92 (27%), Positives = 40/92 (43%), Gaps = 1/92 (1%)

Query: 83  FIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSP-RSSLHKQIANAVNRGEVVSEDI 141
            +G P A K    E L K      +S   ++R +     S   + I N +  G++V ++I
Sbjct: 13  VLGGPGAGKGTQCEKLVKDYSFVHLSAGDLLRAEQGRAGSQYGELIKNCIKEGQIVPQEI 72

Query: 142 IFGLLSKRLEDGYYRGEIGFILDGLPRSRIQA 173
              LL   + D     +  F++DG PR   QA
Sbjct: 73  TLALLRNAISDNVKANKHKFLIDGFPRKMDQA 104

>d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 180

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 34.1 bits (77), Expect = 0.004
 Identities = 21/83 (25%), Positives = 39/83 (46%), Gaps = 1/83 (1%)

Query: 83  FIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDII 142
            IG P A K   A  L +      ++   ++R  ++  + L  +    +++G +VS+DI+
Sbjct: 7   LIGPPGAGKGTQAPNLQERFHAAHLATGDMLRSQIAKGTQLGLEAKKIMDQGGLVSDDIM 66

Query: 143 FGLLSKRLEDGYYRGEIGFILDG 165
             ++   L +       GFILDG
Sbjct: 67  VNMIKDELTNNPACKN-GFILDG 88

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	177
d2ak3a1	189	Adenylate kinase {Cow (Bos taurus), mitochondrial	99.93
d1ak2a1	190	Adenylate kinase {Cow (Bos taurus), mitochondrial	99.91
d3adka_	194	Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}	99.91
d1s3ga1	182	Adenylate kinase {Bacillus globisporus [TaxId: 145	99.9
d1e4va1	179	Adenylate kinase {Escherichia coli [TaxId: 562]}	99.88
d1teva_	194	UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]	99.88
d1akya1	180	Adenylate kinase {Baker's yeast (Saccharomyces cer	99.87
d2cdna1	181	Adenylate kinase {Mycobacterium tuberculosis [TaxI	99.87
d1qf9a_	194	UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4	99.86
d1ukza_	196	Uridylate kinase {Baker's yeast (Saccharomyces cer	99.86
d1zina1	182	Adenylate kinase {Bacillus stearothermophilus [Tax	99.85
d1zaka1	189	Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}	99.84
d1q3ta_	223	CMP kinase {Streptococcus pneumoniae [TaxId: 1313]	99.36
d1ckea_	225	CMP kinase {Escherichia coli [TaxId: 562]}	99.27
d1y63a_	174	Probable kinase LmjF30.1890 {Leishmania major [Tax	99.2
d1rkba_	173	Adenylate kinase {Human (Homo sapiens), isoenzyme	99.12
d2bdta1	176	Hypothetical protein BH3686 {Bacillus halodurans [	99.06
d2iyva1	165	Shikimate kinase (AroK) {Mycobacterium tuberculosi	99.01
d1viaa_	161	Shikimate kinase (AroK) {Campylobacter jejuni [Tax	98.98
d1ly1a_	152	Polynucleotide kinase, kinase domain {Bacteriophag	98.97
d1e6ca_	170	Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax	98.97
d1kaga_	169	Shikimate kinase (AroK) {Escherichia coli [TaxId:	98.95
d1lw7a2	192	Transcriptional regulator NadR, ribosylnicotinamid	98.82
d1yj5a2	172	5' polynucleotide kinase-3' phosphatase, C-termina	98.79
d1knqa_	171	Gluconate kinase {Escherichia coli [TaxId: 562]}	98.78
d1bifa1	213	6-phosphofructo-2-kinase/fructose-2,6-bisphosphata	98.72
d1khta_	190	Adenylate kinase {Archaeon Methanococcus voltae [T	98.72
d1m8pa3	183	ATP sulfurylase C-terminal domain {Fungus (Penicil	98.68
d1zp6a1	176	Hypothetical protein Atu3015 {Agrobacterium tumefa	98.68
d1x6va3	195	Adenosine-5'phosphosulfate kinase (APS kinase) {Hu	98.63
d1jjva_	205	Dephospho-CoA kinase {Haemophilus influenzae [TaxI	98.6
d1qhxa_	178	Chloramphenicol phosphotransferase {Streptomyces v	98.58
d1gvnb_	273	Plasmid maintenance system epsilon/zeta, toxin zet	98.57
d1nksa_	194	Adenylate kinase {Archaeon Sulfolobus acidocaldari	98.53
d1uf9a_	191	Dephospho-CoA kinase {Thermus thermophilus [TaxId:	98.43
d1vhta_	208	Dephospho-CoA kinase {Escherichia coli [TaxId: 562	98.41
d1nn5a_	209	Thymidylate kinase {Human (Homo sapiens) [TaxId: 9	98.36
d1deka_	241	Deoxynucleoside monophosphate kinase {Bacteriophag	98.25
d1m7ga_	208	Adenosine-5'phosphosulfate kinase (APS kinase) {Fu	98.22
d1ixza_	247	AAA domain of cell division protein FtsH {Thermus	98.12
d1in4a2	238	Holliday junction helicase RuvB {Thermotoga mariti	98.11
d1rz3a_	198	Hypothetical protein rbstp0775 {Bacillus stearothe	98.09
d1ye8a1	178	Hypothetical kinase-like protein Aq_1292 {Aquifex	98.07
d1ixsb2	239	Holliday junction helicase RuvB {Thermus thermophi	98.04
d1uj2a_	213	Uridine-cytidine kinase 2 {Human (Homo sapiens) [T	98.03
d1d2na_	246	Hexamerization domain of N-ethylmalemide-sensitive	98.02
d1lv7a_	256	AAA domain of cell division protein FtsH {Escheric	98.0
d1ofha_	309	HslU {Haemophilus influenzae [TaxId: 727]}	97.99
d1g41a_	443	HslU {Haemophilus influenzae [TaxId: 727]}	97.96
d4tmka_	210	Thymidylate kinase {Escherichia coli [TaxId: 562]}	97.94
d1np6a_	170	Molybdopterin-guanine dinucleotide biosynthesis pr	97.92
d1sxja2	253	Replication factor C1 {Baker's yeast (Saccharomyce	97.92
d2i3ba1	189	Cancer-related NTPase, C1orf57 {Human (Homo sapien	97.91
d1r7ra3	265	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	97.85
d1tmka_	214	Thymidylate kinase {Baker's yeast (Saccharomyces c	97.82
d2vp4a1	197	Deoxyribonucleoside kinase {Fruit fly (Drosophila	97.77
d1znwa1	182	Guanylate kinase {Mycobacterium tuberculosis [TaxI	97.73
d1e32a2	258	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	97.72
d1odfa_	286	Hypothetical protein Ygr205W {Baker's yeast (Sacch	97.65
d1svma_	362	Papillomavirus large T antigen helicase domain {Si	97.64
d1iqpa2	231	Replication factor C {Archaeon Pyrococcus furiosus	97.62
d1r6bx3	315	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	97.58
d1fnna2	276	CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T	97.55
d1lvga_	190	Guanylate kinase {Mouse (Mus musculus) [TaxId: 100	97.54
d1sq5a_	308	Pantothenate kinase PanK {Escherichia coli [TaxId:	97.49
d1sxjb2	224	Replication factor C4 {Baker's yeast (Saccharomyce	97.45
d1gsia_	208	Thymidylate kinase {Mycobacterium tuberculosis [Ta	97.43
d1gkya_	186	Guanylate kinase {Baker's yeast (Saccharomyces cer	97.42
d1sxje2	252	Replication factor C5 {Baker's yeast (Saccharomyce	97.4
d1vmaa2	213	GTPase domain of the signal recognition particle r	97.4
d1sxjd2	237	Replication factor C2 {Baker's yeast (Saccharomyce	97.39
d1p5zb_	241	Deoxycytidine kinase {Human (Homo sapiens) [TaxId:	97.37
d1xjca_	165	Molybdopterin-guanine dinucleotide biosynthesis pr	97.36
d2ocpa1	241	Deoxyguanosine kinase {Human (Homo sapiens) [TaxId	97.33
d1sxjc2	227	Replication factor C3 {Baker's yeast (Saccharomyce	97.32
d1tf7a2	242	Circadian clock protein KaiC {Synechococcus sp. st	97.31
d1w5sa2	287	CDC6-like protein APE0152, N-terminal domain {Aero	97.3
d1um8a_	364	ClpX {Helicobacter pylori [TaxId: 210]}	97.29
d1yrba1	244	ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss	97.27
d1ls1a2	207	GTPase domain of the signal sequence recognition p	97.26
d1r8sa_	160	ADP-ribosylation factor {Human (Homo sapiens), ARF	97.23
d1a7ja_	288	Phosphoribulokinase {Rhodobacter sphaeroides [TaxI	97.19
d1l8qa2	213	Chromosomal replication initiation factor DnaA {Aq	97.14
d1j8yf2	211	GTPase domain of the signal sequence recognition p	97.13
d1w44a_	321	NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}	97.12
d1f6ba_	186	SAR1 {Chinese hamster (Cricetulus griseus) [TaxId:	97.1
d1okkd2	207	GTPase domain of the signal recognition particle r	97.07
d2qy9a2	211	GTPase domain of the signal recognition particle r	97.05
d1fzqa_	176	ADP-ribosylation factor {Mouse (Mus musculus), ARL	97.04
d2fnaa2	283	Archaeal ATPase SSO1545 {Sulfolobus solfataricus [	97.03
d1s96a_	205	Guanylate kinase {Escherichia coli [TaxId: 562]}	97.0
d1ksha_	165	ADP-ribosylation factor {Mouse (Mus musculus), ARL	96.99
d1qvra3	315	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	96.97
d1upta_	169	ADP-ribosylation factor {Human (Homo sapiens), ARL	96.96
d1n0wa_	242	DNA repair protein Rad51, catalytic domain {Human	96.96
d1zj6a1	177	ADP-ribosylation factor {Human (Homo sapiens), ARL	96.89
d1kgda_	178	Guanylate kinase-like domain of Cask {Human (Homo	96.87
d1g8pa_	333	ATPase subunit of magnesium chelatase, BchI {Rhodo	96.78
d1z2aa1	164	Rab23 {Mouse (Mus musculus) [TaxId: 10090]}	96.73
d1njfa_	239	delta prime subunit of DNA polymerase III, N-domai	96.69
d1tf7a1	242	Circadian clock protein KaiC {Synechococcus sp. st	96.69
d2qtvb1	166	SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta	96.64
d1jbka_	195	ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}	96.64
d2gj8a1	161	Probable tRNA modification GTPase TrmE (MnmE), G d	96.6
d1a5ta2	207	delta prime subunit of DNA polymerase III, N-domai	96.6
d2p67a1	327	LAO/AO transport system kinase ArgK {Escherichia c	96.59
d1kaoa_	167	Rap2a {Human (Homo sapiens) [TaxId: 9606]}	96.59
d2fn4a1	173	r-Ras {Human (Homo sapiens) [TaxId: 9606]}	96.58
d1szpa2	251	DNA repair protein Rad51, catalytic domain {Baker'	96.53
d1mh1a_	183	Rac {Human (Homo sapiens) [TaxId: 9606]}	96.53
d1pzna2	254	DNA repair protein Rad51, catalytic domain {Archae	96.49
d1z0ja1	167	Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}	96.48
d2qm8a1	323	Metallochaperone MeaB {Methylobacterium extorquens	96.45
d1v5wa_	258	Meiotic recombination protein DMC1/LIM15 homolog {	96.44
d2f7sa1	186	Rab27b {Human (Homo sapiens) [TaxId: 9606]}	96.44
d1ky3a_	175	Rab-related protein ypt7p {Baker's yeast (Saccharo	96.42
d1xtqa1	167	GTP-binding protein RheB {Human (Homo sapiens) [Ta	96.41
d1zd9a1	164	ADP-ribosylation factor {Human (Homo sapiens), ARL	96.41
d1r6bx2	268	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	96.39
d2gnoa2	198	gamma subunit of DNA polymerase III, N-domain {The	96.39
d1svia_	195	Probable GTPase EngB {Bacillus subtilis [TaxId: 14	96.37
d1g16a_	166	Rab-related protein Sec4 {Baker's yeast (Saccharom	96.35
d1e0sa_	173	ADP-ribosylation factor {Human (Homo sapiens), ARF	96.31
d2erya1	171	r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	96.3
d3raba_	169	Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}	96.3
d1moza_	182	ADP-ribosylation factor {Baker's yeast (Saccharomy	96.3
d1mkya2	186	Probable GTPase Der, N-terminal and middle domains	96.29
d2a5ja1	173	Rab2b {Human (Homo sapiens) [TaxId: 9606]}	96.29
d2ngra_	191	CDC42 {Human (Homo sapiens) [TaxId: 9606]}	96.28
d1z06a1	165	Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}	96.27
d2ew1a1	171	Rab30 {Human (Homo sapiens) [TaxId: 9606]}	96.25
d2atva1	168	Ras-like estrogen-regulated growth inhibitor, RERG	96.24
d1c1ya_	167	Rap1A {Human (Homo sapiens) [TaxId: 9606]}	96.23
d2f9la1	175	Rab11b {Human (Homo sapiens) [TaxId: 9606]}	96.22
d2bmea1	174	Rab4a {Human (Homo sapiens) [TaxId: 9606]}	96.22
d2a5yb3	277	CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI	96.22
d1vg8a_	184	Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}	96.21
d1kkma_	176	HPr kinase HprK C-terminal domain {Lactobacillus c	96.19
d2i1qa2	258	DNA repair protein Rad51, catalytic domain {Archae	96.17
d1htwa_	158	Hypothetical protein HI0065 {Haemophilus influenza	96.17
d1nrjb_	209	Signal recognition particle receptor beta-subunit	96.16
d1p6xa_	333	Thymidine kinase {Equine herpesvirus type 4 [TaxId	96.14
d1zcba2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	96.13
d1z0fa1	166	Rab14 {Human (Homo sapiens) [TaxId: 9606]}	96.12
d3b60a1	253	Multidrug resistance ABC transporter MsbA, C-termi	96.11
d1ctqa_	166	cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9	96.06
d1ek0a_	170	Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T	96.06
d1mkya1	171	Probable GTPase Der, N-terminal and middle domains	96.05
d1puia_	188	Probable GTPase EngB {Escherichia coli [TaxId: 562	96.0
d1z08a1	167	Rab21 {Human (Homo sapiens) [TaxId: 9606]}	96.0
d1xzpa2	160	TrmE GTPase domain {Thermotoga maritima [TaxId: 23	95.99
d1wmsa_	174	Rab9a {Human (Homo sapiens) [TaxId: 9606]}	95.98
d2pmka1	241	Haemolysin B ATP-binding protein {Escherichia coli	95.97
d2fh5b1	207	Signal recognition particle receptor beta-subunit	95.96
d1mv5a_	242	Multidrug resistance ABC transporter LmrA, C-termi	95.96
d1x3sa1	177	Rab18 {Human (Homo sapiens) [TaxId: 9606]}	95.96
d2erxa1	171	di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	95.94
d1osna_	331	Thymidine kinase {Varicella-zoster virus [TaxId: 1	95.92
d1r2qa_	170	Rab5a {Human (Homo sapiens) [TaxId: 9606]}	95.91
d2bcgy1	194	GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi	95.9
d1ko7a2	169	HPr kinase HprK C-terminal domain {Staphylococcus	95.88
d1kmqa_	177	RhoA {Human (Homo sapiens) [TaxId: 9606]}	95.86
d1knxa2	177	HPr kinase HprK C-terminal domain {Mycoplasma pneu	95.83
d1jj7a_	251	Peptide transporter Tap1, C-terminal ABC domain {H	95.82
d1yzqa1	164	Rab6 {Human (Homo sapiens) [TaxId: 9606]}	95.82
d2awna2	232	Maltose transport protein MalK, N-terminal domain	95.8
d1u8za_	168	Ras-related protein RalA {Cotton-top tamarin (Sagu	95.78
d2gjsa1	168	Rad {Human (Homo sapiens) [TaxId: 9606]}	95.78
d2g6ba1	170	Rab26 {Human (Homo sapiens) [TaxId: 9606]}	95.74
d1r0wa_	281	Cystic fibrosis transmembrane conductance regulato	95.72
d1cr2a_	277	Gene 4 protein (g4p, DNA primase), helicase domain	95.71
d1l2ta_	230	MJ0796 {Archaeon Methanococcus jannaschii [TaxId:	95.69
d2cxxa1	184	GTP-binding protein engB {Pyrococcus horikoshii [T	95.67
d2atxa1	185	RhoQ {Human (Homo sapiens) [TaxId: 9606]}	95.67
d2g3ya1	172	GTP-binding protein GEM {Human (Homo sapiens) [Tax	95.65
d3dhwc1	240	Methionine import ATP-binding protein MetN {Escher	95.6
d2fu5c1	173	Rab8a {Mouse (Mus musculus) [TaxId: 10090]}	95.55
d1g6oa_	323	Hexameric traffic ATPase, HP0525 {Helicobacter pyl	95.53
d1m7ba_	179	RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}	95.48
d2onka1	240	Molybdate/tungstate import ATP-binding protein Wtp	95.46
d2hyda1	255	Putative multidrug export ATP-binding/permease pro	95.46
d1g2912	240	Maltose transport protein MalK, N-terminal domain	95.44
d1sgwa_	200	Putative ABC transporter PF0895 {Pyrococcus furios	95.43
d1qvra2	387	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	95.41
d1v43a3	239	Hypothetical protein PH0022, N-terminal domain {Py	95.4
d1wf3a1	178	GTPase Era, N-terminal domain {Thermus thermophilu	95.39
d1pjra1	318	DEXX box DNA helicase {Bacillus stearothermophilus	95.37
d2bcjq2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	95.36
d3d31a2	229	Sulfate/molybdate ABC transporter, ATP-binding pro	95.24
d1h65a_	257	Chloroplast protein translocon GTPase Toc34 {Garde	95.19
d1b0ua_	258	ATP-binding subunit of the histidine permease {Sal	95.17
d1uaaa1	306	DEXX box DNA helicase {Escherichia coli, RepD [Tax	95.16
d1wb1a4	179	Elongation factor SelB, N-terminal domain {Methano	95.15
d1byia_	224	Dethiobiotin synthetase {Escherichia coli [TaxId:	95.14
d1egaa1	179	GTPase Era, N-terminal domain {Escherichia coli [T	95.14
d1e2ka_	329	Thymidine kinase {Herpes simplex virus type 1, dif	95.11
d1i2ma_	170	Ran {Human (Homo sapiens) [TaxId: 9606]}	95.11
d2bmja1	175	Centaurin gamma 1, G domain {Human (Homo sapiens)	95.1
d1x1ra1	169	Ras-related protein M-Ras (XRas) {Mouse (Mus muscu	94.96
d1lnza2	185	Obg GTP-binding protein middle domain {Bacillus su	94.95
d1oxxk2	242	Glucose transport protein GlcV, N-terminal domain	94.92
d1tuea_	205	Replication protein E1 helicase domain {Human papi	94.79
d1g6ha_	254	MJ1267 {Archaeon Methanococcus jannaschii [TaxId:	94.79
d1g8fa3	122	ATP sulfurylase C-terminal domain {Baker's yeast (	94.76
d1ji0a_	240	Branched chain aminoacid ABC transporter {Thermoto	94.73
d1nlfa_	274	Hexameric replicative helicase repA {Escherichia c	94.6
d1nija1	222	Hypothetical protein YjiA, N-terminal domain {Esch	94.56
d1svsa1	195	Transducin (alpha subunit) {Rat (Rattus norvegicus	94.52
d1a1va1	136	HCV helicase domain {Human hepatitis C virus (HCV)	94.48
d1udxa2	180	Obg GTP-binding protein middle domain {Thermus the	94.46
d1l7vc_	231	ABC transporter involved in vitamin B12 uptake, Bt	94.4
d1w36d1	359	Exodeoxyribonuclease V alpha chain (RecD) {Escheri	94.33
d2c78a3	204	Elongation factor Tu (EF-Tu), N-terminal (G) domai	94.29
d1azta2	221	Transducin (alpha subunit) {Cow (Bos taurus) [TaxI	94.23
d1g7sa4	227	Initiation factor IF2/eIF5b, N-terminal (G) domain	94.2
d1u0ja_	267	Rep 40 protein helicase domain {Adeno-associated v	94.16
d1u0la2	225	Probable GTPase EngC (YjeQ), C-terminal domain {Th	94.14
d1ny5a2	247	Transcriptional activator sigm54 (NtrC1), C-termin	94.1
d1vpla_	238	Putative ABC transporter TM0544 {Thermotoga mariti	93.98
d1u94a1	263	RecA protein, ATPase-domain {Escherichia coli [Tax	93.85
d1yksa1	140	YFV helicase domain {Yellow fever virus [TaxId: 11	93.84
d1p9ra_	401	Extracellular secretion NTPase EpsE {Vibrio choler	93.76
d1xp8a1	268	RecA protein, ATPase-domain {Deinococcus radiodura	93.73
d1ihua1	296	Arsenite-translocating ATPase ArsA {Escherichia co	93.72
d1c9ka_	180	Adenosylcobinamide kinase/adenosylcobinamide phosp	93.35
d1tq4a_	400	Interferon-inducible GTPase {Mouse (Mus musculus)	93.1
g1f2t.1	292	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	92.79
d1xpua3	289	Transcription termination factor Rho, ATPase domai	92.42
d1e9ra_	433	Bacterial conjugative coupling protein TrwB {Esche	92.32
d1ihua2	279	Arsenite-translocating ATPase ArsA {Escherichia co	92.29
g1xew.1	329	Smc head domain {Pyrococcus furiosus [TaxId: 2261]	92.21
d1d2ea3	196	Elongation factor Tu (EF-Tu), N-terminal (G) domai	91.98
d1t9ha2	231	Probable GTPase EngC (YjeQ), C-terminal domain {Ba	91.87
g1ii8.1	369	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	91.21
d1mo6a1	269	RecA protein, ATPase-domain {Mycobacterium tubercu	90.85
d1ni3a1	296	YchF GTP-binding protein N-terminal domain {Fissio	90.74
d1puja_	273	Probable GTPase YlqF {Bacillus subtilis [TaxId: 14	90.25
d1qhla_	222	Cell division protein MukB {Escherichia coli [TaxI	90.21
d1hyqa_	232	Cell division regulator MinD {Archaeon Archaeoglob	90.11
d2qn6a3	205	Initiation factor eIF2 gamma subunit, N-terminal (	89.96
d1zunb3	222	Sulfate adenylate transferase subunit cysN/C, EF-T	89.41
d1e69a_	308	Smc head domain {Thermotoga maritima [TaxId: 2336]	89.34
g1qhh.1	623	DEXX box DNA helicase {Bacillus stearothermophilus	89.32
d1kk1a3	195	Initiation factor eIF2 gamma subunit, N-terminal (	89.22
d2fz4a1	206	DNA repair protein RAD25 {Archaeoglobus fulgidus [	89.02
d2jdid3	276	Central domain of beta subunit of F1 ATP synthase	88.96
d1jala1	278	YchF GTP-binding protein N-terminal domain {Haemop	88.82
d1wp9a1	200	putative ATP-dependent RNA helicase PF2015 {Pyroco	88.81
d1wb9a2	234	DNA repair protein MutS, the C-terminal domain {Es	88.54
d2bv3a2	276	Elongation factor G (EF-G), N-terminal (G) domain	88.5
d1w1wa_	427	Smc head domain {Baker's yeast (Saccharomyces cere	88.24
d2dy1a2	267	Elongation factor G (EF-G), N-terminal (G) domain	88.22
d1jwyb_	306	Dynamin G domain {Dictyostelium discoideum [TaxId:	87.82
d1wxqa1	319	GTP-binding protein PH0525 {Pyrococcus horikoshii	87.17
d1ewqa2	224	DNA repair protein MutS, the C-terminal domain {Th	86.86
d1cp2a_	269	Nitrogenase iron protein {Clostridium pasteurianum	86.48
d1f60a3	239	Elongation factor eEF-1alpha, N-terminal (G) domai	86.46
d1g3qa_	237	Cell division regulator MinD {Archaeon Pyrococcus	85.93
d2axpa1	164	Hypothetical protein YorR {Bacillus subtilis [TaxI	85.0
d1jnya3	224	Elongation factor eEF-1alpha, N-terminal (G) domai	84.52
d2bmfa2	305	Dengue virus helicase {Dengue virus type 2 [TaxId:	84.34
d2p6ra3	202	Hel308 helicase {Archaeoglobus fulgidus [TaxId: 22	84.29
d1gkub1	237	Helicase-like "domain" of reverse gyrase {Archaeon	83.79
d2eyqa3	233	Transcription-repair coupling factor, TRCF {Escher	82.98
d2jdia3	285	Central domain of alpha subunit of F1 ATP synthase	82.67
d2afhe1	289	Nitrogenase iron protein {Azotobacter vinelandii [	82.59
d2akab1	299	Dynamin G domain {Rat (Rattus norvegicus) [TaxId:	82.32
d1r5ba3	245	Eukaryotic peptide chain release factor ERF2, G do	82.21
d1f5na2	277	Interferon-induced guanylate-binding protein 1 (GB	82.08

>d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]

Probab=99.93  E-value=4.8e-26  Score=179.44  Aligned_cols=100  Identities=20%  Similarity=0.388  Sum_probs=94.7

Q ss_pred             ccCCCeEEEEEcCCCCCchHHHHHHHHHhCCCeeeCchhhhhccCCCCchHHHHHHHHHcCCcchHHHHHHHHHHHHHcc
Q 030464           74 ERRRGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGLLSKRLEDG  153 (177)
Q Consensus        74 ~~~~~~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~dLlr~el~~~s~lgk~i~~~l~~G~~Ipdeli~~Ll~~~L~~~  153 (177)
                      ++.|.++|+|+|||||||||+|+.||++||++|||+++++|+++...+..+..+++.+..|..+|++++..++++.+...
T Consensus         2 ~~~r~mrIiliG~PGSGKtT~a~~La~~~g~~~is~gdllr~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~l~~~~~~~~   81 (189)
T d2ak3a1           2 ASARLLRAAIMGAPGSGKGTVSSRITKHFELKHLSSGDLLRDNMLRGTEIGVLAKTFIDQGKLIPDDVMTRLVLHELKNL   81 (189)
T ss_dssp             CSSCCCEEEEECCTTSSHHHHHHHHHHHBCCEEEEHHHHHHHHHHTTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHH
T ss_pred             CCCcceeEEEECCCCCCHHHHHHHHHHHHCCeEEcHHHHHHHHHHhhhhhhHHHHHHhhhhhhccchhhhhhhhhhhhhh
Confidence            46799999999999999999999999999999999999999999999999999999999999999999999999999877


Q ss_pred             CCCCcceEEEeCCCCCHHHHHhc
Q 030464          154 YYRGEIGFILDGLPRSRIQATIS  176 (177)
Q Consensus       154 ~~~~~~G~ILDGfPrt~~QAe~L  176 (177)
                      .   ..||||||||++..||+.|
T Consensus        82 ~---~~~~ildGfPr~~~q~~~l  101 (189)
T d2ak3a1          82 T---QYNWLLDGFPRTLPQAEAL  101 (189)
T ss_dssp             T---TSCEEEESCCCSHHHHHHH
T ss_pred             h---hcCcccccccchhhHHHHh
Confidence            5   4799999999999999875

>d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]

Probab=99.91  E-value=2.6e-25  Score=173.00  Aligned_cols=98  Identities=31%  Similarity=0.507  Sum_probs=92.8

Q ss_pred             CCeEEEEEcCCCCCchHHHHHHHHHhCCCeeeCchhhhhccCCCCchHHHHHHHHHcCCcchHHHHHHHHHHHHHccCCC
Q 030464           77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGLLSKRLEDGYYR  156 (177)
Q Consensus        77 ~~~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~dLlr~el~~~s~lgk~i~~~l~~G~~Ipdeli~~Ll~~~L~~~~~~  156 (177)
                      ++++|+|+|||||||||+|+.||++||++||++++++|++...+++.+..+..++.+|..+|++.+..++.+++.+..  
T Consensus         2 ~~~riil~G~pGSGKsT~a~~La~~~g~~~i~~gdllr~~~~~~~~~g~~~~~~~~~g~~~~~~~v~~~~~~~l~~~~--   79 (190)
T d1ak2a1           2 KGVRAVLLGPPGAGKGTQAPKLAKNFCVCHLATGDMLRAMVASGSELGKKLKATMDAGKLVSDEMVLELIEKNLETPP--   79 (190)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHTSGG--
T ss_pred             CccEEEEECCCCCCHHHHHHHHHHHhCCeEEeHHHHHHHHHhccCcccchhhhhhccCCccccceeeeeehhhhcccc--
Confidence            788999999999999999999999999999999999999988899999999999999999999999999999998775  


Q ss_pred             CcceEEEeCCCCCHHHHHhc
Q 030464          157 GEIGFILDGLPRSRIQATIS  176 (177)
Q Consensus       157 ~~~G~ILDGfPrt~~QAe~L  176 (177)
                      ..+||||||||++..||+.|
T Consensus        80 ~~~g~ii~g~pr~~~qa~~l   99 (190)
T d1ak2a1          80 CKNGFLLDGFPRTVRQAEML   99 (190)
T ss_dssp             GTTCEEEESCCCSHHHHHHH
T ss_pred             ccCceeecccccchhHHHHH
Confidence            36899999999999999875

>d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.91  E-value=4.7e-25  Score=172.51  Aligned_cols=100  Identities=19%  Similarity=0.345  Sum_probs=93.9

Q ss_pred             CCCeEEEEEcCCCCCchHHHHHHHHHhCCCeeeCchhhhhccCCCCchHHHHHHHHHcCCcchHHHHHHHHHHHHHccCC
Q 030464           76 RRGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGLLSKRLEDGYY  155 (177)
Q Consensus        76 ~~~~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~dLlr~el~~~s~lgk~i~~~l~~G~~Ipdeli~~Ll~~~L~~~~~  155 (177)
                      .++..|+|+|||||||||+|+.||++||++||++++++|+.+...+..+..+++.+..|..+|++++..++.+++....+
T Consensus         6 ~~~~iI~l~G~pGSGKsT~a~~La~~~g~~~is~g~llr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~   85 (194)
T d3adka_           6 KKSKIIFVVGGPGSGKGTQCEKIVQKYGYTHLSTGDLLRAEVSSGSARGKMLSEIMEKGQLVPLETVLDMLRDAMVAKVD   85 (194)
T ss_dssp             HTSCEEEEEECTTSSHHHHHHHHHHHTCCEEEEHHHHHHHHHHHTCHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHTTTT
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHHHHhCCeeEeccHHHHHHHHHhHhhhhhhHHHHhhccCCchheeeeehhhhhhhccc
Confidence            46788999999999999999999999999999999999999999999999999999999999999999999999988765


Q ss_pred             CCcceEEEeCCCCCHHHHHhc
Q 030464          156 RGEIGFILDGLPRSRIQATIS  176 (177)
Q Consensus       156 ~~~~G~ILDGfPrt~~QAe~L  176 (177)
                       ..+||||||||++..||+.+
T Consensus        86 -~~~g~ildg~pr~~~qa~~~  105 (194)
T d3adka_          86 -TSKGFLIDGYPREVKQGEEF  105 (194)
T ss_dssp             -TCSCEEEESCCSSHHHHHHH
T ss_pred             -ccccceeeeccchhHHHHHH
Confidence             47899999999999999875

>d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus globisporus [TaxId: 1459]

Probab=99.90  E-value=3.8e-24  Score=165.50  Aligned_cols=96  Identities=25%  Similarity=0.474  Sum_probs=90.7

Q ss_pred             eEEEEEcCCCCCchHHHHHHHHHhCCCeeeCchhhhhccCCCCchHHHHHHHHHcCCcchHHHHHHHHHHHHHccCCCCc
Q 030464           79 VHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGLLSKRLEDGYYRGE  158 (177)
Q Consensus        79 ~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~dLlr~el~~~s~lgk~i~~~l~~G~~Ipdeli~~Ll~~~L~~~~~~~~  158 (177)
                      |+|+|+|||||||||+|+.||++||++|+++++++|.+....++.++.++..+.+|..+|++....++..++....+  +
T Consensus         1 M~I~i~G~pGSGKsT~a~~La~~~g~~~is~gdllr~~~~~~~~~g~~i~~~~~~g~~~~d~~~~~~~~~~~~~~~~--~   78 (182)
T d1s3ga1           1 MNIVLMGLPGAGKGTQADRIVEKYGTPHISTGDMFRAAIQEGTELGVKAKSFMDQGALVPDEVTIGIVRERLSKSDC--D   78 (182)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHHCCCEEEHHHHHHHHHHHTCHHHHHHHHHHHHTCCCCHHHHHHHHHHHHTSSTT--S
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHCCceeeHHHHHHHhhhcCCchHHHHHHHHHcCCcccCcchhHHHHHhhccccc--c
Confidence            68999999999999999999999999999999999999888899999999999999999999999999999988763  6


Q ss_pred             ceEEEeCCCCCHHHHHhc
Q 030464          159 IGFILDGLPRSRIQATIS  176 (177)
Q Consensus       159 ~G~ILDGfPrt~~QAe~L  176 (177)
                      .||||||||++..|++.|
T Consensus        79 ~~~vl~g~p~~~~~~~~l   96 (182)
T d1s3ga1          79 NGFLLDGFPRTVPQAEAL   96 (182)
T ss_dssp             SCEEEESCCCSHHHHHHH
T ss_pred             cceeeeccccchhHHHHH
Confidence            899999999999999875

>d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Escherichia coli [TaxId: 562]

Probab=99.88  E-value=1.5e-23  Score=161.48  Aligned_cols=96  Identities=27%  Similarity=0.518  Sum_probs=90.1

Q ss_pred             eEEEEEcCCCCCchHHHHHHHHHhCCCeeeCchhhhhccCCCCchHHHHHHHHHcCCcchHHHHHHHHHHHHHccCCCCc
Q 030464           79 VHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGLLSKRLEDGYYRGE  158 (177)
Q Consensus        79 ~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~dLlr~el~~~s~lgk~i~~~l~~G~~Ipdeli~~Ll~~~L~~~~~~~~  158 (177)
                      |+|+|+|||||||||+|+.||+++|+.||+++++++++....++.++.+++.+.+|..+|++++..++.+++...++  .
T Consensus         1 m~I~i~G~pGSGKsT~~~~La~~~~~~~i~~~~llr~~~~~~~~~~~~i~~~~~~g~~~~d~~v~~~~~~~~~~~~~--~   78 (179)
T d1e4va1           1 MRIILLGAPVAGKGTQAQFIMEKYGIPQISTGDMLRAAVKSGSELGKQAKDIMDAGKLVTDELVIALVKERIAQEDC--R   78 (179)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHHHHCCCEEEHHHHHHHHHHHTCTTTGGGHHHHHHTCCCCHHHHHHHHHHHHTSGGG--G
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHhCCceechhhHhHHhhccCChHHHHHHHHHHcCCCCcchhHHHHHHHhhccccc--c
Confidence            68999999999999999999999999999999999999888899999999999999999999999999999887764  6


Q ss_pred             ceEEEeCCCCCHHHHHhc
Q 030464          159 IGFILDGLPRSRIQATIS  176 (177)
Q Consensus       159 ~G~ILDGfPrt~~QAe~L  176 (177)
                      +|||+||||++..|++.+
T Consensus        79 ~g~i~~g~pr~~~~~~~~   96 (179)
T d1e4va1          79 NGFLLDGFPRTIPQADAM   96 (179)
T ss_dssp             GCEEEESCCCSHHHHHHH
T ss_pred             cceeecccccchHHhhhh
Confidence            899999999999999864

>d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=4.5e-23  Score=160.13  Aligned_cols=99  Identities=19%  Similarity=0.334  Sum_probs=88.4

Q ss_pred             CeEEEEEcCCCCCchHHHHHHHHHhCCCeeeCchhhhhccC-CCCchHHHHHHHHHcCCcchHHHHHHHHHHHHHccCC-
Q 030464           78 GVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLS-PRSSLHKQIANAVNRGEVVSEDIIFGLLSKRLEDGYY-  155 (177)
Q Consensus        78 ~~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~dLlr~el~-~~s~lgk~i~~~l~~G~~Ipdeli~~Ll~~~L~~~~~-  155 (177)
                      |++|+|+|||||||||+|+.||++||+.||++++++|++.. ..++.++.+...+.+|..+||+.+..++.+++....+ 
T Consensus         1 p~iI~i~GppGSGKsT~a~~La~~~g~~~i~~g~llR~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~   80 (194)
T d1teva_           1 PLVVFVLGGPGAGKGTQCARIVEKYGYTHLSAGELLRDERKNPDSQYGELIEKYIKEGKIVPVEITISLLKREMDQTMAA   80 (194)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHCTTSTTHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHhCCceEcHHHHHHHHHHhhhhhHHHHHHHHHhcCCccccchhhHHHHHhhcccchh
Confidence            68999999999999999999999999999999999998764 4678899999999999999999999999998865432 


Q ss_pred             -CCcceEEEeCCCCCHHHHHhc
Q 030464          156 -RGEIGFILDGLPRSRIQATIS  176 (177)
Q Consensus       156 -~~~~G~ILDGfPrt~~QAe~L  176 (177)
                       ....|||+||||++..|++.|
T Consensus        81 ~~~~~~~~~~g~pr~~~~~~~l  102 (194)
T d1teva_          81 NAQKNKFLIDGFPRNQDNLQGW  102 (194)
T ss_dssp             CTTCCEEEEESCCCSHHHHHHH
T ss_pred             hhcccceeeccchhhHHHHHHH
Confidence             136899999999999999864

>d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.87  E-value=8.4e-23  Score=158.06  Aligned_cols=98  Identities=26%  Similarity=0.448  Sum_probs=91.4

Q ss_pred             CeEEEEEcCCCCCchHHHHHHHHHhCCCeeeCchhhhhccCCCCchHHHHHHHHHcCCcchHHHHHHHHHHHHHccCCCC
Q 030464           78 GVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGLLSKRLEDGYYRG  157 (177)
Q Consensus        78 ~~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~dLlr~el~~~s~lgk~i~~~l~~G~~Ipdeli~~Ll~~~L~~~~~~~  157 (177)
                      .++|+|+|||||||||+|+.||++||++||++++++++.....+..+..++..++.|..+|++++..++..++.+..+ .
T Consensus         2 ~mrIvl~G~pGSGKtT~a~~La~~~g~~~i~~~d~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~   80 (180)
T d1akya1           2 SIRMVLIGPPGAGKGTQAPNLQERFHAAHLATGDMLRSQIAKGTQLGLEAKKIMDQGGLVSDDIMVNMIKDELTNNPA-C   80 (180)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHTTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHCGG-G
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHHhCCceEeccccceeccccCChHHHHHHHHHhhhcccccchhHHHHHHHHhcCcc-c
Confidence            578999999999999999999999999999999999999989999999999999999999999999999999887765 4


Q ss_pred             cceEEEeCCCCCHHHHHhc
Q 030464          158 EIGFILDGLPRSRIQATIS  176 (177)
Q Consensus       158 ~~G~ILDGfPrt~~QAe~L  176 (177)
                      ..|||+||||++..||+.+
T Consensus        81 ~~g~i~dg~p~~~~q~~~~   99 (180)
T d1akya1          81 KNGFILDGFPRTIPQAEKL   99 (180)
T ss_dssp             GSCEEEESCCCSHHHHHHH
T ss_pred             cCCEeccCccchhhhHHHH
Confidence            7899999999999999753

>d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.87  E-value=1.5e-22  Score=156.00  Aligned_cols=96  Identities=30%  Similarity=0.462  Sum_probs=90.7

Q ss_pred             eEEEEEcCCCCCchHHHHHHHHHhCCCeeeCchhhhhccCCCCchHHHHHHHHHcCCcchHHHHHHHHHHHHHccCCCCc
Q 030464           79 VHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGLLSKRLEDGYYRGE  158 (177)
Q Consensus        79 ~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~dLlr~el~~~s~lgk~i~~~l~~G~~Ipdeli~~Ll~~~L~~~~~~~~  158 (177)
                      |+|+|+|||||||||+|+.|+++||+.||++++++++++...++.+..+...+++|..+|++++.+++.+++...++  .
T Consensus         1 m~I~i~G~pGsGKsT~a~~La~~~g~~~i~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~   78 (181)
T d2cdna1           1 MRVLLLGPPGAGKGTQAVKLAEKLGIPQISTGELFRRNIEEGTKLGVEAKRYLDAGDLVPSDLTNELVDDRLNNPDA--A   78 (181)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHHTCCEEEHHHHHHHHHHTTCHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTSGGG--T
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHCCceEchHHHHHHHHhhhhhhHHHHHHHHHhhhhhhhHHHHHHHHHHhhCccc--c
Confidence            68999999999999999999999999999999999999999999999999999999999999999999999888764  5


Q ss_pred             ceEEEeCCCCCHHHHHhc
Q 030464          159 IGFILDGLPRSRIQATIS  176 (177)
Q Consensus       159 ~G~ILDGfPrt~~QAe~L  176 (177)
                      .|||+||||++..|+..|
T Consensus        79 ~~~i~d~~p~~~~~~~~l   96 (181)
T d2cdna1          79 NGFILDGYPRSVEQAKAL   96 (181)
T ss_dssp             TCEEEESCCCSHHHHHHH
T ss_pred             ccEEecccccchhHHHHH
Confidence            799999999999999875

>d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Dictyostelium discoideum [TaxId: 44689]

Probab=99.86  E-value=3.6e-22  Score=155.17  Aligned_cols=98  Identities=19%  Similarity=0.295  Sum_probs=90.9

Q ss_pred             CCCeEEEEEcCCCCCchHHHHHHHHHhCCCeeeCchhhhhccCCCCchHHHHHHHHHcCCcchHHHHHHHHHHHHHccCC
Q 030464           76 RRGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGLLSKRLEDGYY  155 (177)
Q Consensus        76 ~~~~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~dLlr~el~~~s~lgk~i~~~l~~G~~Ipdeli~~Ll~~~L~~~~~  155 (177)
                      .+|.+|+|+|||||||||+|++||++||++||++++++|+++......+..++..+..|..++++.+..++..++.... 
T Consensus         4 ~kp~iI~i~G~pGSGKsT~a~~La~~~g~~~i~~g~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-   82 (194)
T d1qf9a_           4 SKPNVVFVLGGPGSGKGTQCANIVRDFGWVHLSAGDLLRQEQQSGSKDGEMIATMIKNGEIVPSIVTVKLLKNAIDANQ-   82 (194)
T ss_dssp             CCCEEEEEEESTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHTTCTTHHHHHHHHHTTCCCCHHHHHHHHHHHHHTST-
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHHCCceEchhhHHHHHhhhhhhhhhhhhhHhhhccccchHHHHHHHHHHhhhhh-
Confidence            4778999999999999999999999999999999999999998889999999999999999999999999999887764 


Q ss_pred             CCcceEEEeCCCCCHHHHHhc
Q 030464          156 RGEIGFILDGLPRSRIQATIS  176 (177)
Q Consensus       156 ~~~~G~ILDGfPrt~~QAe~L  176 (177)
                        .+|||+||||++..|++.|
T Consensus        83 --~~~~i~dg~p~~~~~~~~l  101 (194)
T d1qf9a_          83 --GKNFLVDGFPRNEENNNSW  101 (194)
T ss_dssp             --TCCEEEETCCCSHHHHHHH
T ss_pred             --cCCeEEEecchhhhhHHHH
Confidence              5799999999999998764

>d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Uridylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.86  E-value=5.5e-22  Score=154.62  Aligned_cols=102  Identities=25%  Similarity=0.356  Sum_probs=89.0

Q ss_pred             cCCCeEEEEEcCCCCCchHHHHHHHHHhCCCeeeCchhhhhccC-CCCchHHHHHHHHHcCCcchHHHHHHHHHHHHHcc
Q 030464           75 RRRGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLS-PRSSLHKQIANAVNRGEVVSEDIIFGLLSKRLEDG  153 (177)
Q Consensus        75 ~~~~~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~dLlr~el~-~~s~lgk~i~~~l~~G~~Ipdeli~~Ll~~~L~~~  153 (177)
                      |.+-.+|+|+|||||||||+|+.||++||++||++++++|++.. ..+.+++.++.+...|..+++..+..++.+++...
T Consensus         5 ~~~~~iI~i~GppGSGKsT~a~~La~~~g~~~is~gdl~R~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (196)
T d1ukza_           5 PDQVSVIFVLGGPGAGKGTQCEKLVKDYSFVHLSAGDLLRAEQGRAGSQYGELIKNCIKEGQIVPQEITLALLRNAISDN   84 (196)
T ss_dssp             TTTCEEEEEECSTTSSHHHHHHHHHHHSSCEEEEHHHHHHHHHHSTTCSCHHHHHHHHHTTCCCCHHHHHHHHHHHHHHH
T ss_pred             CCCCcEEEEECCCCCCHHHHHHHHHHHhCCeEEehhHHHHHHhhhcccHHHHHHHHhhhccccccchhHHHHHHHHHHhh
Confidence            34567799999999999999999999999999999999998664 45789999999999999999999999888877665


Q ss_pred             CCCCcceEEEeCCCCCHHHHHhc
Q 030464          154 YYRGEIGFILDGLPRSRIQATIS  176 (177)
Q Consensus       154 ~~~~~~G~ILDGfPrt~~QAe~L  176 (177)
                      .+....||||||||++..||+.+
T Consensus        85 ~~~~~~~~vl~g~p~~~~q~~~~  107 (196)
T d1ukza_          85 VKANKHKFLIDGFPRKMDQAISF  107 (196)
T ss_dssp             HHTTCCEEEEETCCCSHHHHHHH
T ss_pred             hccCCCceeeeccchhHHHHHHH
Confidence            43346799999999999999865

>d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.85  E-value=1.2e-21  Score=149.81  Aligned_cols=96  Identities=28%  Similarity=0.515  Sum_probs=89.5

Q ss_pred             eEEEEEcCCCCCchHHHHHHHHHhCCCeeeCchhhhhccCCCCchHHHHHHHHHcCCcchHHHHHHHHHHHHHccCCCCc
Q 030464           79 VHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGLLSKRLEDGYYRGE  158 (177)
Q Consensus        79 ~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~dLlr~el~~~s~lgk~i~~~l~~G~~Ipdeli~~Ll~~~L~~~~~~~~  158 (177)
                      |+|+|+|||||||||+|+.||++||++||+++++++.+....++.+..++.++..|+.+|++....++.+++....+  .
T Consensus         1 m~I~i~G~pGSGKsT~a~~La~~~~~~~i~~~~ll~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~   78 (182)
T d1zina1           1 MNLVLMGLPGAGKGTQAEKIVAAYGIPHISTGDMFRAAMKEGTPLGLQAKQYMDRGDLVPDEVTIGIVRERLSKDDC--Q   78 (182)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHHCCCEEEHHHHHHHHHHHTCHHHHHHHHHHHHTCCCCHHHHHHHHHHHHTSGGG--T
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHCCceechhHHHHHhhccCChhhHHHHHHHHcCCeeccchHHHHHHHHhhchhh--h
Confidence            58999999999999999999999999999999999998888899999999999999999999999999999888774  6


Q ss_pred             ceEEEeCCCCCHHHHHhc
Q 030464          159 IGFILDGLPRSRIQATIS  176 (177)
Q Consensus       159 ~G~ILDGfPrt~~QAe~L  176 (177)
                      .|||+||+|++..|+..+
T Consensus        79 ~~~v~~~~~~~~~~~~~~   96 (182)
T d1zina1          79 NGFLLDGFPRTVAQAEAL   96 (182)
T ss_dssp             TCEEEESCCCSHHHHHHH
T ss_pred             cCcccccccchhHHHHHH
Confidence            899999999999988653

>d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Maize (Zea mays) [TaxId: 4577]

Probab=99.84  E-value=9.2e-22  Score=152.75  Aligned_cols=99  Identities=24%  Similarity=0.428  Sum_probs=90.5

Q ss_pred             CCeEEEEEcCCCCCchHHHHHHHHHhCCCeeeCchhhhhccCCCCchHHHHHHHHHcCCcchHHHHHHHHHHHHHccCCC
Q 030464           77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGLLSKRLEDGYYR  156 (177)
Q Consensus        77 ~~~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~dLlr~el~~~s~lgk~i~~~l~~G~~Ipdeli~~Ll~~~L~~~~~~  156 (177)
                      +|++|+|+|||||||||+|+.|+++||++||++++++++.+....+..+.+.+.+..|..+++++....+...+....+ 
T Consensus         2 ~Pm~I~i~GppGsGKsT~a~~La~~~~~~~is~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-   80 (189)
T d1zaka1           2 DPLKVMISGAPASGKGTQCELIKTKYQLAHISAGDLLRAEIAAGSENGKRAKEFMEKGQLVPDEIVVNMVKERLRQPDA-   80 (189)
T ss_dssp             CSCCEEEEESTTSSHHHHHHHHHHHHCCEECCHHHHHHHHHHHTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHSHHH-
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHCCcEEehhHHHHHhhhcccHHHHHHHHHHhcCCcccceeehhhhhhHhhhccc-
Confidence            6889999999999999999999999999999999999999888888899999999999999999988888888776654 


Q ss_pred             CcceEEEeCCCCCHHHHHhc
Q 030464          157 GEIGFILDGLPRSRIQATIS  176 (177)
Q Consensus       157 ~~~G~ILDGfPrt~~QAe~L  176 (177)
                      ..+|||+||||++..|++.|
T Consensus        81 ~~~~~vid~~~~~~~q~~~l  100 (189)
T d1zaka1          81 QENGWLLDGYPRSYSQAMAL  100 (189)
T ss_dssp             HHTCEEEESCCCSHHHHHHH
T ss_pred             ccCcEEeeccchhhHHHhhh
Confidence            36799999999999999875

>d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=99.36  E-value=5.6e-13  Score=103.80  Aligned_cols=89  Identities=12%  Similarity=-0.009  Sum_probs=59.3

Q ss_pred             CCCeEEEEEcCCCCCchHHHHHHHHHhCCCeeeCchhhhhccCCCCchHHHHHHHHHcCCcchHHHHHHHHHHHHHcc--
Q 030464           76 RRGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGLLSKRLEDG--  153 (177)
Q Consensus        76 ~~~~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~dLlr~el~~~s~lgk~i~~~l~~G~~Ipdeli~~Ll~~~L~~~--  153 (177)
                      +++++|.|.|||||||||+|+.||++||++|||.|+|+|..          +......|..+................  
T Consensus         1 Mk~i~IaIdGp~GsGKgT~ak~La~~lg~~~istGdl~R~~----------a~~~~~~~~~~~~~~~~~~~~~~~~~~~~   70 (223)
T d1q3ta_           1 MKTIQIAIDGPASSGKSTVAKIIAKDFGFTYLDTGAMYRAA----------TYMALKNQLGVEEVEALLALLDQHPISFG   70 (223)
T ss_dssp             CCCCEEEEECSSCSSHHHHHHHHHHHHCCEEEEHHHHHHHH----------HHHHHHTTCCTTCHHHHHHHHHHSCCEEE
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHHHhCCcEECHHHHHHHH----------HHHHHHcCCCchHHHHHHHHHhhhhhhhc
Confidence            46788999999999999999999999999999999999974          334445554443322211111111100  


Q ss_pred             --C----CCCcceEEEeCCCCCHHHHH
Q 030464          154 --Y----YRGEIGFILDGLPRSRIQAT  174 (177)
Q Consensus       154 --~----~~~~~G~ILDGfPrt~~QAe  174 (177)
                        .    .....++.+++++++..++.
T Consensus        71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~   97 (223)
T d1q3ta_          71 RSETGDQLVFVGDVDITHPIRENEVTN   97 (223)
T ss_dssp             EETTTEEEEEETTEEESSSSCSHHHHH
T ss_pred             ccchhhhHHhhcCcccccchhhHHHHh
Confidence              0    00135788888888877654

>d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Escherichia coli [TaxId: 562]

Probab=99.27  E-value=7.8e-13  Score=102.07  Aligned_cols=39  Identities=15%  Similarity=0.108  Sum_probs=36.5

Q ss_pred             CeEEEEEcCCCCCchHHHHHHHHHhCCCeeeCchhhhhc
Q 030464           78 GVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQD  116 (177)
Q Consensus        78 ~~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~dLlr~e  116 (177)
                      .+.|+|.|||||||+|+|+.||++||++|||+|+|+|++
T Consensus         3 ~piI~I~GppGSGKgT~ak~La~~~gl~~iStGdLlR~~   41 (225)
T d1ckea_           3 APVITIDGPSGAGKGTLCKAMAEALQWHLLDSGAIYRVL   41 (225)
T ss_dssp             SCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHhCCcEECHHHHHHHH
Confidence            457899999999999999999999999999999999974

>d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Probable kinase LmjF30.1890
species: Leishmania major [TaxId: 5664]

Probab=99.20  E-value=1.9e-11  Score=90.77  Aligned_cols=88  Identities=15%  Similarity=0.151  Sum_probs=55.8

Q ss_pred             CCCeEEEEEcCCCCCchHHHHHHHHHhC-CCeeeCchhhhhccCCCCchHHHHHHHHHcCCcchHHHHHHHHHHHHHccC
Q 030464           76 RRGVHWAFIGSPRAKKHVYAEMLSKLLE-VPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGLLSKRLEDGY  154 (177)
Q Consensus        76 ~~~~~IlIiGpPGSGKSTlA~~LAk~lg-l~~Is~~dLlr~el~~~s~lgk~i~~~l~~G~~Ipdeli~~Ll~~~L~~~~  154 (177)
                      +++++|+|+|+|||||||+|+.|+++++ ..+++.+++...........       ...+..+..+.....+.+.+....
T Consensus         3 pk~~~I~i~G~~GsGKTT~~~~La~~l~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~i   75 (174)
T d1y63a_           3 PKGINILITGTPGTGKTSMAEMIAAELDGFQHLEVGKLVKENHFYTEYD-------TELDTHIIEEKDEDRLLDFMEPIM   75 (174)
T ss_dssp             CSSCEEEEECSTTSSHHHHHHHHHHHSTTEEEEEHHHHHHHTTCSCC-------------CCCCCHHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEEeCCCCCHHHHHHHHHHHhCCCcEEeHHHHHHHHhhhhhHH-------HhhcccchHHHHHHHHHHHHHhhh
Confidence            4789999999999999999999999996 56777666665543322211       112333444444444444444333


Q ss_pred             CCCcceEEEeCCCCCHH
Q 030464          155 YRGEIGFILDGLPRSRI  171 (177)
Q Consensus       155 ~~~~~G~ILDGfPrt~~  171 (177)
                      . ...++++|++++...
T Consensus        76 ~-~~~~~~~~~~~~~~~   91 (174)
T d1y63a_          76 V-SRGNHVVDYHSSELF   91 (174)
T ss_dssp             T-SSSEEEEECSCCTTS
T ss_pred             h-hcccccccHHHHHHH
Confidence            2 357899999887643

>d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]

Probab=99.12  E-value=1e-11  Score=91.70  Aligned_cols=39  Identities=15%  Similarity=0.247  Sum_probs=36.3

Q ss_pred             CeEEEEEcCCCCCchHHHHHHHHHhCCCeeeCchhhhhc
Q 030464           78 GVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQD  116 (177)
Q Consensus        78 ~~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~dLlr~e  116 (177)
                      -++|+|+|+|||||||+|+.||+++|+++++++++++..
T Consensus         4 ~~~I~i~G~pGsGKTTia~~La~~l~~~~i~~~~~~~~~   42 (173)
T d1rkba_           4 LPNILLTGTPGVGKTTLGKELASKSGLKYINVGDLAREE   42 (173)
T ss_dssp             CCCEEEECSTTSSHHHHHHHHHHHHCCEEEEHHHHHHHT
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHHCCcEEechHHHHHh
Confidence            468999999999999999999999999999999998864

>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein BH3686
species: Bacillus halodurans [TaxId: 86665]

Probab=99.06  E-value=1e-10  Score=85.69  Aligned_cols=85  Identities=12%  Similarity=0.008  Sum_probs=52.6

Q ss_pred             eEEEEEcCCCCCchHHHHHHHHHhCCCeeeCchhhhhccCCCCchHHHHHHHHHcCCcchHHHHHHHHHHHHHccCCCCc
Q 030464           79 VHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGLLSKRLEDGYYRGE  158 (177)
Q Consensus        79 ~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~dLlr~el~~~s~lgk~i~~~l~~G~~Ipdeli~~Ll~~~L~~~~~~~~  158 (177)
                      ..|+|+|+|||||||+|++|++.++..++..+|.++..+............    +.......+..++...+..     .
T Consensus         3 klI~i~G~~GsGKTTva~~L~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~-----~   73 (176)
T d2bdta1           3 KLYIITGPAGVGKSTTCKRLAAQLDNSAYIEGDIINHMVVGGYRPPWESDE----LLALTWKNITDLTVNFLLA-----Q   73 (176)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHSSSEEEEEHHHHHTTCCTTCCCGGGCHH----HHHHHHHHHHHHHHHHHHT-----T
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHcCCCEEEehHHHHHHHhccccchhHHHH----HHHHHHHHHHHHHHHHHhc-----C
Confidence            458899999999999999999999998877778887765543221111100    0111122334444443333     3


Q ss_pred             ceEEEeCCCCCHHH
Q 030464          159 IGFILDGLPRSRIQ  172 (177)
Q Consensus       159 ~G~ILDGfPrt~~Q  172 (177)
                      .++|+|+......+
T Consensus        74 ~~~iid~~~~~~~~   87 (176)
T d2bdta1          74 NDVVLDYIAFPDEA   87 (176)
T ss_dssp             CEEEEESCCCHHHH
T ss_pred             CCcccccccccHHH
Confidence            57888887665443

>d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.01  E-value=3.2e-10  Score=85.08  Aligned_cols=39  Identities=21%  Similarity=0.249  Sum_probs=35.3

Q ss_pred             eEEEEEcCCCCCchHHHHHHHHHhCCCeeeCchhhhhcc
Q 030464           79 VHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDL  117 (177)
Q Consensus        79 ~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~dLlr~el  117 (177)
                      ++|+|+|+|||||||+++.||+++|++++++++++.+..
T Consensus         2 p~IvliG~~G~GKSTig~~La~~l~~~fiD~D~~ie~~~   40 (165)
T d2iyva1           2 PKAVLVGLPGSGKSTIGRRLAKALGVGLLDTDVAIEQRT   40 (165)
T ss_dssp             CSEEEECSTTSSHHHHHHHHHHHHTCCEEEHHHHHHHHH
T ss_pred             CcEEEECCCCCCHHHHHHHHHHHhCCCeEeeccchhhhh
Confidence            568899999999999999999999999999998887643

>d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Campylobacter jejuni [TaxId: 197]

Probab=98.98  E-value=2.1e-10  Score=86.26  Aligned_cols=38  Identities=24%  Similarity=0.308  Sum_probs=35.0

Q ss_pred             EEEEEcCCCCCchHHHHHHHHHhCCCeeeCchhhhhcc
Q 030464           80 HWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDL  117 (177)
Q Consensus        80 ~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~dLlr~el  117 (177)
                      +|+|+|+|||||||+++.||+++|++++++++++++..
T Consensus         2 ~I~liG~~GsGKsTi~k~La~~l~~~~~d~d~~ie~~~   39 (161)
T d1viaa_           2 NIVFIGFMGSGKSTLARALAKDLDLVFLDSDFLIEQKF   39 (161)
T ss_dssp             CEEEECCTTSCHHHHHHHHHHHHTCEEEEHHHHHHHHH
T ss_pred             cEEEECCCCCCHHHHHHHHHHHhCCCEEecCchhhhHH
Confidence            58999999999999999999999999999999887643

>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Polynucleotide kinase, kinase domain
species: Bacteriophage T4 [TaxId: 10665]

Probab=98.97  E-value=4.3e-10  Score=81.91  Aligned_cols=91  Identities=13%  Similarity=0.073  Sum_probs=56.6

Q ss_pred             eEEEEEcCCCCCchHHHHHHHHH-hCCCeeeCchhhhhccCCCCchHHHHHHHHHcCCcchHHHHHHHHHHHHHccCCCC
Q 030464           79 VHWAFIGSPRAKKHVYAEMLSKL-LEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGLLSKRLEDGYYRG  157 (177)
Q Consensus        79 ~~IlIiGpPGSGKSTlA~~LAk~-lgl~~Is~~dLlr~el~~~s~lgk~i~~~l~~G~~Ipdeli~~Ll~~~L~~~~~~~  157 (177)
                      ..|+|.|+|||||||+|++|++. .++.+++.+++.+........-.......   ......++...+++..+....  .
T Consensus         3 klIii~G~pGsGKTTla~~L~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~--~   77 (152)
T d1ly1a_           3 KIILTIGCPGSGKSTWAREFIAKNPGFYNINRDDYRQSIMAHEERDEYKYTKK---KEGIVTGMQFDTAKSILYGGD--S   77 (152)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHSTTEEEECHHHHHHHHTTSCCGGGCCCCHH---HHHHHHHHHHHHHHHHHTSCS--S
T ss_pred             EEEEEECCCCCCHHHHHHHHHHhCCCCEEechHHHHHHHhcccchhhhhhhhh---hhHHHHHHHHHHHHHHHHhhc--c
Confidence            35778999999999999998765 58999999887665543221110000000   001122455666666666654  3


Q ss_pred             cceEEEeCCCCCHHHHH
Q 030464          158 EIGFILDGLPRSRIQAT  174 (177)
Q Consensus       158 ~~G~ILDGfPrt~~QAe  174 (177)
                      ...+|+|+...+..+.+
T Consensus        78 ~~~vi~d~~~~~~~~~~   94 (152)
T d1ly1a_          78 VKGVIISDTNLNPERRL   94 (152)
T ss_dssp             CCEEEECSCCCSHHHHH
T ss_pred             CCCcccccccCCHHHHH
Confidence            46789999877765544

>d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Erwinia chrysanthemi [TaxId: 556]

Probab=98.97  E-value=4.4e-10  Score=84.68  Aligned_cols=37  Identities=8%  Similarity=0.117  Sum_probs=33.8

Q ss_pred             EEEEEcCCCCCchHHHHHHHHHhCCCeeeCchhhhhc
Q 030464           80 HWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQD  116 (177)
Q Consensus        80 ~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~dLlr~e  116 (177)
                      .|+|+|+|||||||+|+.||+++|+++++.++++++.
T Consensus         4 ~Iil~G~~GsGKSTia~~LA~~Lg~~~id~D~~ie~~   40 (170)
T d1e6ca_           4 PIFMVGARGCGMTTVGRELARALGYEFVDTDIFMQHT   40 (170)
T ss_dssp             CEEEESCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHHHHhCCCEEehhhhhhhh
Confidence            4778899999999999999999999999999888764

>d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Escherichia coli [TaxId: 562]

Probab=98.95  E-value=1.7e-10  Score=83.36  Aligned_cols=40  Identities=13%  Similarity=0.130  Sum_probs=34.9

Q ss_pred             eEEEEEcCCCCCchHHHHHHHHHhCCCeeeCchhhhhccC
Q 030464           79 VHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLS  118 (177)
Q Consensus        79 ~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~dLlr~el~  118 (177)
                      ..|+|+|+|||||||+|+.||+++|+++++.+++......
T Consensus         3 k~I~l~G~~GsGKSTvak~La~~L~~~~id~~~~~~~~~~   42 (169)
T d1kaga_           3 RNIFLVGPMGAGKSTIGRQLAQQLNMEFYDSDQEIEKRTG   42 (169)
T ss_dssp             CCEEEECCTTSCHHHHHHHHHHHTTCEEEEHHHHHHHHHT
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHhCCCeEeechhHHhhhc
Confidence            3688999999999999999999999999999887665443

>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain
species: Haemophilus influenzae [TaxId: 727]

Probab=98.82  E-value=8.7e-10  Score=81.02  Aligned_cols=35  Identities=14%  Similarity=0.125  Sum_probs=32.1

Q ss_pred             CCeEEEEEcCCCCCchHHHHHHHHHhCCCeeeCch
Q 030464           77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSS  111 (177)
Q Consensus        77 ~~~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~d  111 (177)
                      +..+|+|+|+|||||||+|++||+++|.+++....
T Consensus         6 ~~K~I~i~G~~GsGKTTla~~La~~~~~~~i~~~~   40 (192)
T d1lw7a2           6 FAKTVAILGGESSGKSVLVNKLAAVFNTTSAWEYG   40 (192)
T ss_dssp             TCEEEEEECCTTSHHHHHHHHHHHHTTCEEECCTT
T ss_pred             cceEEEEECCCCCCHHHHHHHHHHHhCCCeEeeeh
Confidence            67899999999999999999999999999987653

>d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.79  E-value=4.3e-09  Score=80.34  Aligned_cols=38  Identities=11%  Similarity=0.025  Sum_probs=34.3

Q ss_pred             CCCeEEEEEcCCCCCchHHHHHHHHHhCCCeeeCchhh
Q 030464           76 RRGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIV  113 (177)
Q Consensus        76 ~~~~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~dLl  113 (177)
                      .+|..|+++|+|||||||+|+++++.+++.+|+.+++.
T Consensus        12 ~~p~liil~G~pGsGKST~a~~l~~~~~~~~i~~D~~~   49 (172)
T d1yj5a2          12 PNPEVVVAVGFPGAGKSTFIQEHLVSAGYVHVNRDTLG   49 (172)
T ss_dssp             SSCCEEEEECCTTSSHHHHHHHHTGGGTCEEEEHHHHC
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHhcCCEEEchHHHH
Confidence            46788999999999999999999999999999987654

>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Gluconate kinase
domain: Gluconate kinase
species: Escherichia coli [TaxId: 562]

Probab=98.78  E-value=1.8e-09  Score=79.61  Aligned_cols=40  Identities=10%  Similarity=0.114  Sum_probs=35.3

Q ss_pred             CCCeEEEEEcCCCCCchHHHHHHHHHhCCCeeeCchhhhh
Q 030464           76 RRGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQ  115 (177)
Q Consensus        76 ~~~~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~dLlr~  115 (177)
                      ..+..|+|+|+|||||||+|+.|++.+|.++++.+++...
T Consensus         4 ~~~~iivl~G~~GsGKsT~a~~La~~l~~~~~~~d~~~~~   43 (171)
T d1knqa_           4 HDHHIYVLMGVSGSGKSAVASEVAHQLHAAFLDGDFLHPR   43 (171)
T ss_dssp             TTSEEEEEECSTTSCHHHHHHHHHHHHTCEEEEGGGGCCH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHhCCCeechhhhhHH
Confidence            3567788999999999999999999999999999887554

>d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.72  E-value=1.5e-09  Score=82.54  Aligned_cols=39  Identities=18%  Similarity=0.317  Sum_probs=29.9

Q ss_pred             CeEEEEEcCCCCCchHHHHHHHHHhCCC-----eeeCchhhhhcc
Q 030464           78 GVHWAFIGSPRAKKHVYAEMLSKLLEVP-----RISMSSIVRQDL  117 (177)
Q Consensus        78 ~~~IlIiGpPGSGKSTlA~~LAk~lgl~-----~Is~~dLlr~el  117 (177)
                      |..|+++|.|||||||+|++|++.++..     .++. |.+|..+
T Consensus         2 p~li~l~GlpgsGKSTla~~L~~~l~~~~~~~~~~~~-D~~r~~~   45 (213)
T d1bifa1           2 PTLIVMVGLPARGKTYISKKLTRYLNFIGVPTREFNV-GQYRRDM   45 (213)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEH-HHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHHHhcCCCCeEEcc-cceehhh
Confidence            5679999999999999999999987644     3444 4455443

>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=98.72  E-value=1.2e-09  Score=80.70  Aligned_cols=38  Identities=13%  Similarity=0.117  Sum_probs=29.7

Q ss_pred             eEEEEEcCCCCCchHHHHHHHHHhCC-----CeeeCchhhhhc
Q 030464           79 VHWAFIGSPRAKKHVYAEMLSKLLEV-----PRISMSSIVRQD  116 (177)
Q Consensus        79 ~~IlIiGpPGSGKSTlA~~LAk~lgl-----~~Is~~dLlr~e  116 (177)
                      ..|+|.|+|||||||+++.|++.++.     .+++.++..+.+
T Consensus         2 kiI~i~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~~~~~~~~~   44 (190)
T d1khta_           2 KVVVVTGVPGVGSTTSSQLAMDNLRKEGVNYKMVSFGSVMFEV   44 (190)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHHHTTTCCCEEEEHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEecCChhHHH
Confidence            56899999999999999999998744     345556655543

>d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=98.68  E-value=2e-09  Score=79.03  Aligned_cols=34  Identities=18%  Similarity=0.108  Sum_probs=29.1

Q ss_pred             cCCCeEEEEEcCCCCCchHHHHHHHHHhCCCeee
Q 030464           75 RRRGVHWAFIGSPRAKKHVYAEMLSKLLEVPRIS  108 (177)
Q Consensus        75 ~~~~~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is  108 (177)
                      ..++..|+|+|+|||||||+|+.||++++..++.
T Consensus         3 ~~~g~~I~l~G~~GsGKTTia~~La~~L~~~~~~   36 (183)
T d1m8pa3           3 ATQGFTIFLTGYMNSGKDAIARALQVTLNQQGGR   36 (183)
T ss_dssp             TTCCEEEEEECSTTSSHHHHHHHHHHHHHHHCSS
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCC
Confidence            4678999999999999999999999998654443

>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein Atu3015
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=98.68  E-value=5.9e-09  Score=76.79  Aligned_cols=42  Identities=26%  Similarity=0.345  Sum_probs=34.4

Q ss_pred             CCeEEEEEcCCCCCchHHHHHHHHHhCCCeeeC-chhhhhccC
Q 030464           77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISM-SSIVRQDLS  118 (177)
Q Consensus        77 ~~~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~-~dLlr~el~  118 (177)
                      .+..|+|+|+|||||||+|+.|++++|++++++ +|.++..+.
T Consensus         3 ~g~iI~l~G~~GsGKSTia~~La~~lg~~~~~~~~d~~~~~~~   45 (176)
T d1zp6a1           3 GGNILLLSGHPGSGKSTIAEALANLPGVPKVHFHSDDLWGYIK   45 (176)
T ss_dssp             TTEEEEEEECTTSCHHHHHHHHHTCSSSCEEEECTTHHHHTCC
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHhCCCEEEecHHHHHHHHh
Confidence            456789999999999999999999999998766 355665543

>d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.63  E-value=1.6e-09  Score=81.37  Aligned_cols=40  Identities=20%  Similarity=0.186  Sum_probs=33.8

Q ss_pred             CCeEEEEEcCCCCCchHHHHHHHHHhCCCeeeCchhhhhc
Q 030464           77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQD  116 (177)
Q Consensus        77 ~~~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~dLlr~e  116 (177)
                      +++.|+|+|+|||||||+|+.||+.++..+++...+....
T Consensus        18 ~g~vI~L~G~pGSGKTTiAk~La~~l~~~~~~~~~~~~d~   57 (195)
T d1x6va3          18 RGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDN   57 (195)
T ss_dssp             CCEEEEEESSCHHHHHHHHHHHHHHHHHTTCCEEEECHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHhcCCCccchhHHh
Confidence            7889999999999999999999999987777766555443

>d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Haemophilus influenzae [TaxId: 727]

Probab=98.60  E-value=9.8e-08  Score=73.89  Aligned_cols=52  Identities=19%  Similarity=0.264  Sum_probs=42.9

Q ss_pred             eEEEEEcCCCCCchHHHHHHHHHhCCCeeeCchhhhhccCCCCchHHHHHHHH
Q 030464           79 VHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAV  131 (177)
Q Consensus        79 ~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~dLlr~el~~~s~lgk~i~~~l  131 (177)
                      ..|.|+|++||||||+|+.|. ++|++++++|+++++.+.........+.+..
T Consensus         3 ~iIgITG~igSGKStv~~~l~-~~G~~vidaD~i~~~l~~~~~~~~~~i~~~~   54 (205)
T d1jjva_           3 YIVGLTGGIGSGKTTIANLFT-DLGVPLVDADVVAREVVAKDSPLLSKIVEHF   54 (205)
T ss_dssp             EEEEEECSTTSCHHHHHHHHH-TTTCCEEEHHHHHHHTTCSSCHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHH-HCCCeEEEchHHHHHHHhccchhHHHHHHhc
Confidence            567899999999999999885 6899999999999998887766655554443

>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Chloramphenicol phosphotransferase
domain: Chloramphenicol phosphotransferase
species: Streptomyces venezuelae [TaxId: 54571]

Probab=98.58  E-value=1.6e-08  Score=74.02  Aligned_cols=34  Identities=18%  Similarity=0.185  Sum_probs=29.0

Q ss_pred             CCeEEEEEcCCCCCchHHHHHHHHHhCCCeeeCc
Q 030464           77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMS  110 (177)
Q Consensus        77 ~~~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~  110 (177)
                      .+..|+|+|+|||||||+|+.|++.++...+.++
T Consensus         2 ~~kiI~l~G~~GsGKsTva~~L~~~l~~~~~~~~   35 (178)
T d1qhxa_           2 TTRMIILNGGSSAGKSGIVRCLQSVLPEPWLAFG   35 (178)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHHSSSCEEEEE
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHcCCCeEEee
Confidence            3557888899999999999999999998766554

>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
species: Streptococcus pyogenes [TaxId: 1314]

Probab=98.57  E-value=1.8e-08  Score=79.08  Aligned_cols=39  Identities=10%  Similarity=0.055  Sum_probs=31.0

Q ss_pred             ccCCCeEEEEEcCCCCCchHHHHHHHHHhCC--CeeeCchh
Q 030464           74 ERRRGVHWAFIGSPRAKKHVYAEMLSKLLEV--PRISMSSI  112 (177)
Q Consensus        74 ~~~~~~~IlIiGpPGSGKSTlA~~LAk~lgl--~~Is~~dL  112 (177)
                      ....|..|+|.||||||||++|+.||+.++.  ..++.+++
T Consensus        28 ~~~~P~~ilL~GpPGtGKT~la~~la~~~~~~~~~i~~d~~   68 (273)
T d1gvnb_          28 AVESPTAFLLGGQPGSGKTSLRSAIFEETQGNVIVIDNDTF   68 (273)
T ss_dssp             CCSSCEEEEEECCTTSCTHHHHHHHHHHTTTCCEEECTHHH
T ss_pred             CCCCCEEEEEECCCCCCHHHHHHHHHHHhhcceEEEecHHH
Confidence            3456777999999999999999999999855  45565444

>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]

Probab=98.53  E-value=1.6e-08  Score=74.86  Aligned_cols=38  Identities=13%  Similarity=0.122  Sum_probs=29.4

Q ss_pred             eEEEEEcCCCCCchHHHHHHHHHhCC-----CeeeCchhhhhc
Q 030464           79 VHWAFIGSPRAKKHVYAEMLSKLLEV-----PRISMSSIVRQD  116 (177)
Q Consensus        79 ~~IlIiGpPGSGKSTlA~~LAk~lgl-----~~Is~~dLlr~e  116 (177)
                      +.|+|.|+|||||||+++.|++.++.     .+++.++.++..
T Consensus         2 kiivi~G~~GsGKTT~~~~La~~L~~~~~~~~~~~~~d~~~~~   44 (194)
T d1nksa_           2 KIGIVTGIPGVGKSTVLAKVKEILDNQGINNKIINYGDFMLAT   44 (194)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHHHHHTTTCCEEEEEHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEECCCcchHH
Confidence            45678899999999999999998854     355666655543

>d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Thermus thermophilus [TaxId: 274]

Probab=98.43  E-value=3.1e-08  Score=75.14  Aligned_cols=40  Identities=13%  Similarity=0.223  Sum_probs=35.1

Q ss_pred             CCeEEEEEcCCCCCchHHHHHHHHHhCCCeeeCchhhhhcc
Q 030464           77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDL  117 (177)
Q Consensus        77 ~~~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~dLlr~el  117 (177)
                      .|+.|.|+|++||||||+|+.| +++|+++++.+++.+...
T Consensus         2 ~p~IIgitG~~gSGKstva~~l-~~~g~~~~~~D~~~~~~~   41 (191)
T d1uf9a_           2 HPIIIGITGNIGSGKSTVAALL-RSWGYPVLDLDALAARAR   41 (191)
T ss_dssp             CCEEEEEEECTTSCHHHHHHHH-HHTTCCEEEHHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHH-HHCCCeEEEccHHHHHhh
Confidence            4788999999999999999999 569999999988877644

>d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Escherichia coli [TaxId: 562]

Probab=98.41  E-value=1.4e-07  Score=73.24  Aligned_cols=50  Identities=24%  Similarity=0.238  Sum_probs=40.7

Q ss_pred             eEEEEEcCCCCCchHHHHHHHHHhCCCeeeCchhhhhccCCCCchHHHHHH
Q 030464           79 VHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIAN  129 (177)
Q Consensus        79 ~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~dLlr~el~~~s~lgk~i~~  129 (177)
                      ..|.|+|++||||||+|+.|. ++|++++++|++.++.+....+....+.+
T Consensus         4 ~iIgitG~igSGKStv~~~l~-~~G~~vidaD~i~~~l~~~~~~~~~~i~~   53 (208)
T d1vhta_           4 YIVALTGGIGSGKSTVANAFA-DLGINVIDADIIARQVVEPGAPALHAIAD   53 (208)
T ss_dssp             EEEEEECCTTSCHHHHHHHHH-HTTCEEEEHHHHHHHTTSTTCTHHHHHHH
T ss_pred             EEEEEECCCcCCHHHHHHHHH-HCCCcEEEchHHHHHHHhccchHHHHHHH
Confidence            367799999999999999885 78999999999999888766655444433

>d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.36  E-value=1.2e-06  Score=68.36  Aligned_cols=82  Identities=16%  Similarity=0.213  Sum_probs=52.5

Q ss_pred             CCeEEEEEcCCCCCchHHHHHHHHHh---CCCeeeCchhhhhccCCCCchHHHHHHHHHcCCcchHHHHH----------
Q 030464           77 RGVHWAFIGSPRAKKHVYAEMLSKLL---EVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIF----------  143 (177)
Q Consensus        77 ~~~~IlIiGpPGSGKSTlA~~LAk~l---gl~~Is~~dLlr~el~~~s~lgk~i~~~l~~G~~Ipdeli~----------  143 (177)
                      |++.|+|.|+.||||||+++.|++.+   |+.++.+.     +-...+..++.+++.+.....+......          
T Consensus         2 rG~lI~ieG~dGsGKsT~~~~L~~~L~~~g~~v~~~~-----~p~~~~~~~~~i~~~l~~~~~~~~~~~~~l~~~~r~~~   76 (209)
T d1nn5a_           2 RGALIVLEGVDRAGKSTQSRKLVEALCAAGHRAELLR-----FPERSTEIGKLLSSYLQKKSDVEDHSVHLLFSANRWEQ   76 (209)
T ss_dssp             CCCEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEE-----SSCTTSHHHHHHHHHHTTSSCCCHHHHHHHHHHHHHTT
T ss_pred             CeeEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEe-----CCCCCcccchhhhhhhhcccccchhhhhhHHHHHHHHH
Confidence            67789999999999999999999976   56665442     2223456677777776665544433221          


Q ss_pred             -HHHHHHHHccCCCCcceEEEeCCCC
Q 030464          144 -GLLSKRLEDGYYRGEIGFILDGLPR  168 (177)
Q Consensus       144 -~Ll~~~L~~~~~~~~~G~ILDGfPr  168 (177)
                       +.+...+.+     ...+|+|.|.-
T Consensus        77 ~~~i~~~l~~-----g~~VI~DRy~~   97 (209)
T d1nn5a_          77 VPLIKEKLSQ-----GVTLVVDRYAF   97 (209)
T ss_dssp             HHHHHHHHHT-----TCEEEEESCHH
T ss_pred             HHhHHHHhhc-----ccceeecchhh
Confidence             223333333     34689998743

>d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxynucleoside monophosphate kinase
species: Bacteriophage T4 [TaxId: 10665]

Probab=98.25  E-value=2.2e-07  Score=72.63  Aligned_cols=40  Identities=13%  Similarity=0.155  Sum_probs=34.5

Q ss_pred             CeEEEEEcCCCCCchHHHHHHHHHhCCCeeeCchhhhhcc
Q 030464           78 GVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDL  117 (177)
Q Consensus        78 ~~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~dLlr~el  117 (177)
                      +.+|.|+|+.||||||+|+.|++++|+++++.+|.+..++
T Consensus         1 M~iIgiTG~igSGKsTva~~l~e~~g~~~i~~aD~i~~~l   40 (241)
T d1deka_           1 MKLIFLSGVKRSGKDTTADFIMSNYSAVKYQLAGPIKDAL   40 (241)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHSCEEECCTTHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHhCCCeEEcccHHHHHHH
Confidence            3578899999999999999999999999999877665543

>d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=98.22  E-value=5.7e-07  Score=70.34  Aligned_cols=45  Identities=24%  Similarity=0.310  Sum_probs=35.5

Q ss_pred             cCCCeEEEEEcCCCCCchHHHHHHHHHh----CCC--eeeCchhhhhccCCC
Q 030464           75 RRRGVHWAFIGSPRAKKHVYAEMLSKLL----EVP--RISMSSIVRQDLSPR  120 (177)
Q Consensus        75 ~~~~~~IlIiGpPGSGKSTlA~~LAk~l----gl~--~Is~~dLlr~el~~~  120 (177)
                      ..+++.|+|+|.|||||||+|+.|++++    ++.  +++ +|.+|+.+...
T Consensus        21 ~~kg~vIwltGlsGsGKTTia~~L~~~l~~~~~~~~~~ld-gD~iR~~l~~~   71 (208)
T d1m7ga_          21 NQRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLD-GDNIRFGLNKD   71 (208)
T ss_dssp             TSSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEEC-HHHHTTTTTTT
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHHHHhcCceEEEEc-chHHHHhhcCC
Confidence            3688999999999999999999998754    444  344 57888877543

>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Thermus thermophilus [TaxId: 274]

Probab=98.12  E-value=2.9e-06  Score=67.97  Aligned_cols=39  Identities=23%  Similarity=0.233  Sum_probs=32.0

Q ss_pred             CCeEEEEEcCCCCCchHHHHHHHHHhCCCeeeCc--hhhhh
Q 030464           77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMS--SIVRQ  115 (177)
Q Consensus        77 ~~~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~--dLlr~  115 (177)
                      .+..|+|.||||+|||++|+.||+.+|++++.++  +++..
T Consensus        41 ~~~giLl~GppGtGKT~la~aia~~~~~~~~~i~~~~l~~~   81 (247)
T d1ixza_          41 IPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEM   81 (247)
T ss_dssp             CCSEEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHHHS
T ss_pred             CCceEEEecCCCCChhHHHHHHHHHcCCCEEEEEhHHhhhc
Confidence            3456899999999999999999999999986654  55543

>d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermotoga maritima [TaxId: 2336]

Probab=98.11  E-value=7.9e-07  Score=69.09  Aligned_cols=33  Identities=21%  Similarity=0.180  Sum_probs=28.4

Q ss_pred             CeEEEEEcCCCCCchHHHHHHHHHhCCCeeeCc
Q 030464           78 GVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMS  110 (177)
Q Consensus        78 ~~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~  110 (177)
                      ...++|.||||+|||++|+.||+.++...+.+.
T Consensus        35 ~~~~L~~GPpGtGKT~lA~~la~~~~~~~~~~~   67 (238)
T d1in4a2          35 LDHVLLAGPPGLGKTTLAHIIASELQTNIHVTS   67 (238)
T ss_dssp             CCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEE
T ss_pred             CCeEEEECCCCCcHHHHHHHHHhccCCCccccc
Confidence            346899999999999999999999998866543

>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein rbstp0775
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=98.09  E-value=4.7e-07  Score=67.25  Aligned_cols=30  Identities=23%  Similarity=0.199  Sum_probs=25.8

Q ss_pred             cCCCeEEEEEcCCCCCchHHHHHHHHHhCC
Q 030464           75 RRRGVHWAFIGSPRAKKHVYAEMLSKLLEV  104 (177)
Q Consensus        75 ~~~~~~IlIiGpPGSGKSTlA~~LAk~lgl  104 (177)
                      +..++.|.|.|++||||||+|++|++.++.
T Consensus        19 ~~~~~iIgI~G~~GSGKSTla~~L~~~l~~   48 (198)
T d1rz3a_          19 TAGRLVLGIDGLSRSGKTTLANQLSQTLRE   48 (198)
T ss_dssp             CSSSEEEEEEECTTSSHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHHhcc
Confidence            346778889999999999999999997753

>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hypothetical kinase-like protein Aq 1292
species: Aquifex aeolicus [TaxId: 63363]

Probab=98.07  E-value=8.5e-07  Score=65.31  Aligned_cols=27  Identities=15%  Similarity=0.207  Sum_probs=24.3

Q ss_pred             eEEEEEcCCCCCchHHHHHHHHHhCCC
Q 030464           79 VHWAFIGSPRAKKHVYAEMLSKLLEVP  105 (177)
Q Consensus        79 ~~IlIiGpPGSGKSTlA~~LAk~lgl~  105 (177)
                      |+|+|+|||||||||+++.|+..++..
T Consensus         1 ~ki~I~G~~G~GKSTLl~~i~~~l~~~   27 (178)
T d1ye8a1           1 MKIIITGEPGVGKTTLVKKIVERLGKR   27 (178)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHHGGG
T ss_pred             CEEEEECCCCcHHHHHHHHHHhcCCCC
Confidence            589999999999999999999987654

>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermus thermophilus [TaxId: 274]

Probab=98.04  E-value=1.3e-06  Score=68.01  Aligned_cols=33  Identities=24%  Similarity=0.232  Sum_probs=28.6

Q ss_pred             CeEEEEEcCCCCCchHHHHHHHHHhCCCeeeCc
Q 030464           78 GVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMS  110 (177)
Q Consensus        78 ~~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~  110 (177)
                      +..++|.||||+||||+|+.+|+.+++....+.
T Consensus        35 ~~~~Ll~GPpG~GKTtla~~la~~~~~~~~~~~   67 (239)
T d1ixsb2          35 LEHLLLFGPPGLGKTTLAHVIAHELGVNLRVTS   67 (239)
T ss_dssp             CCCEEEECCTTSCHHHHHHHHHHHHTCCEEEEE
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHhCCCeEecc
Confidence            456899999999999999999999998865554

>d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Uridine-cytidine kinase 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.03  E-value=1.3e-06  Score=66.94  Aligned_cols=37  Identities=16%  Similarity=0.109  Sum_probs=30.5

Q ss_pred             CCeEEEEEcCCCCCchHHHHHHHHHhCC----------CeeeCchhh
Q 030464           77 RGVHWAFIGSPRAKKHVYAEMLSKLLEV----------PRISMSSIV  113 (177)
Q Consensus        77 ~~~~IlIiGpPGSGKSTlA~~LAk~lgl----------~~Is~~dLl  113 (177)
                      .|..|.|.|++||||||+|+.|++.++.          .++++++..
T Consensus         1 ~P~iIgI~G~~gSGKSTla~~L~~~l~~~~~~~~~~~~~vi~~D~yy   47 (213)
T d1uj2a_           1 EPFLIGVSGGTASGKSSVCAKIVQLLGQNEVDYRQKQVVILSQDSFY   47 (213)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHHHTTGGGSCGGGCSEEEEEGGGGB
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHhchhccccCCCceEEEeccccc
Confidence            3778899999999999999999999864          356666654

>d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=98.02  E-value=1.6e-06  Score=69.40  Aligned_cols=33  Identities=21%  Similarity=0.262  Sum_probs=29.5

Q ss_pred             CeEEEEEcCCCCCchHHHHHHHHHhCCCeeeCc
Q 030464           78 GVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMS  110 (177)
Q Consensus        78 ~~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~  110 (177)
                      +..|+|.||||||||++|+.||+..|++++.+.
T Consensus        40 ~~~vLL~GppGtGKT~la~alA~~~~~~~~~i~   72 (246)
T d1d2na_          40 LVSVLLEGPPHSGKTALAAKIAEESNFPFIKIC   72 (246)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHHHTCSEEEEE
T ss_pred             CeEEEEECcCCCCHHHHHHHHhhcccccccccc
Confidence            346999999999999999999999999988764

>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Escherichia coli [TaxId: 562]

Probab=98.00  E-value=2e-06  Score=69.43  Aligned_cols=39  Identities=26%  Similarity=0.271  Sum_probs=32.3

Q ss_pred             CCeEEEEEcCCCCCchHHHHHHHHHhCCCe--eeCchhhhh
Q 030464           77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPR--ISMSSIVRQ  115 (177)
Q Consensus        77 ~~~~IlIiGpPGSGKSTlA~~LAk~lgl~~--Is~~dLlr~  115 (177)
                      .+..|++.||||+|||++|+.||+.++++.  ++..+++..
T Consensus        44 ~~~~iLL~GppGtGKT~la~~iA~~~~~~~~~i~~~~l~~~   84 (256)
T d1lv7a_          44 IPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEM   84 (256)
T ss_dssp             CCCEEEEECCTTSCHHHHHHHHHHHHTCCEEEECSCSSTTS
T ss_pred             CCCeEEeeCCCCCCccHHHHHHHHHcCCCEEEEEhHHhhhc
Confidence            445689999999999999999999999886  455566654

>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=97.99  E-value=1.6e-06  Score=71.28  Aligned_cols=37  Identities=22%  Similarity=0.311  Sum_probs=30.1

Q ss_pred             CCeEEEEEcCCCCCchHHHHHHHHHhCCC--eeeCchhh
Q 030464           77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVP--RISMSSIV  113 (177)
Q Consensus        77 ~~~~IlIiGpPGSGKSTlA~~LAk~lgl~--~Is~~dLl  113 (177)
                      .+..|+|.||||||||.+|+.||+.++.+  .++++++.
T Consensus        48 ~~~~iLl~GPpG~GKT~lAkalA~~~~~~~~~i~~s~~~   86 (309)
T d1ofha_          48 TPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFT   86 (309)
T ss_dssp             CCCCEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGGS
T ss_pred             CCceEEEECCCCCCHHHHHHHHhhccccchhcccccccc
Confidence            44568899999999999999999999877  45555554

>d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=97.96  E-value=1.8e-06  Score=75.01  Aligned_cols=35  Identities=26%  Similarity=0.261  Sum_probs=31.6

Q ss_pred             CCCeEEEEEcCCCCCchHHHHHHHHHhCCCeeeCc
Q 030464           76 RRGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMS  110 (177)
Q Consensus        76 ~~~~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~  110 (177)
                      ..+.+|+++||||||||.+|+.||+.+++|++.++
T Consensus        47 i~ksNILliGPTGvGKTlLAr~LAk~l~VPFv~~d   81 (443)
T d1g41a_          47 VTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVE   81 (443)
T ss_dssp             CCCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEE
T ss_pred             cccccEEEECCCCCCHHHHHHHHHHHhCCCEEEee
Confidence            35669999999999999999999999999988764

>d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Escherichia coli [TaxId: 562]

Probab=97.94  E-value=8e-06  Score=62.44  Aligned_cols=53  Identities=13%  Similarity=0.136  Sum_probs=34.9

Q ss_pred             CCeEEEEEcCCCCCchHHHHHHHHHh---CCCeeeCchhhhhccCCCCchHHHHHHHHHcC
Q 030464           77 RGVHWAFIGSPRAKKHVYAEMLSKLL---EVPRISMSSIVRQDLSPRSSLHKQIANAVNRG  134 (177)
Q Consensus        77 ~~~~IlIiGpPGSGKSTlA~~LAk~l---gl~~Is~~dLlr~el~~~s~lgk~i~~~l~~G  134 (177)
                      |+.-|+|-|++||||||+++.|++.+   |+.++-.   .+.  ...+.+++.+++.+..+
T Consensus         1 rgkfIviEG~dGsGKsT~~~~L~~~L~~~g~~~~~~---~~e--p~~~~~g~~i~~~~~~~   56 (210)
T d4tmka_           1 RSKYIVIEGLEGAGKTTARNVVVETLEQLGIRDMVF---TRE--PGGTQLAEKLRSLLLDI   56 (210)
T ss_dssp             CCCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEE---EES--SCSSHHHHHHHHHHHST
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHHHhCCCCeEEE---ecC--CCCccchhhhHHHHhcc
Confidence            45678999999999999999999876   5543321   010  12345566666665543

>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Escherichia coli [TaxId: 562]

Probab=97.92  E-value=2.5e-06  Score=61.78  Aligned_cols=24  Identities=21%  Similarity=0.088  Sum_probs=21.6

Q ss_pred             eEEEEEcCCCCCchHHHHHHHHHh
Q 030464           79 VHWAFIGSPRAKKHVYAEMLSKLL  102 (177)
Q Consensus        79 ~~IlIiGpPGSGKSTlA~~LAk~l  102 (177)
                      +.|+|+|+|||||||+++.|++.+
T Consensus         3 Pvi~itG~~GSGKTTL~~~L~~~l   26 (170)
T d1np6a_           3 PLLAFAAWSGTGKTTLLKKLIPAL   26 (170)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CEEEEEcCCCCCHHHHHHHHHHHH
Confidence            468999999999999999999865

>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.92  E-value=3e-06  Score=65.88  Aligned_cols=33  Identities=15%  Similarity=0.079  Sum_probs=28.0

Q ss_pred             CCeEEEEEcCCCCCchHHHHHHHHHhCCCeeeC
Q 030464           77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISM  109 (177)
Q Consensus        77 ~~~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~  109 (177)
                      ....++|.||||+||||+|+.||+.++..++.+
T Consensus        51 ~~~~lll~GPpG~GKTt~a~~la~~~~~~~~~~   83 (253)
T d1sxja2          51 VFRAAMLYGPPGIGKTTAAHLVAQELGYDILEQ   83 (253)
T ss_dssp             SCSEEEEECSTTSSHHHHHHHHHHHTTCEEEEE
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHHHhhhhcc
Confidence            445789999999999999999999998765533

>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Cancer-related NTPase, C1orf57
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.91  E-value=2.3e-06  Score=62.08  Aligned_cols=24  Identities=25%  Similarity=0.310  Sum_probs=22.0

Q ss_pred             eEEEEEcCCCCCchHHHHHHHHHh
Q 030464           79 VHWAFIGSPRAKKHVYAEMLSKLL  102 (177)
Q Consensus        79 ~~IlIiGpPGSGKSTlA~~LAk~l  102 (177)
                      .+|+|+|+||+||||+++.+++.+
T Consensus         2 k~v~ItG~~GtGKTtl~~~i~~~l   25 (189)
T d2i3ba1           2 RHVFLTGPPGVGKTTLIHKASEVL   25 (189)
T ss_dssp             CCEEEESCCSSCHHHHHHHHHHHH
T ss_pred             cEEEEECCCCCcHHHHHHHHHHHH
Confidence            468999999999999999999876

>d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.85  E-value=2.1e-05  Score=63.17  Aligned_cols=34  Identities=21%  Similarity=0.260  Sum_probs=30.1

Q ss_pred             CCeEEEEEcCCCCCchHHHHHHHHHhCCCeeeCc
Q 030464           77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMS  110 (177)
Q Consensus        77 ~~~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~  110 (177)
                      .+..|++.||||+|||++++.+|+.+|++++.+.
T Consensus        40 ~~~giLL~Gp~GtGKT~l~~ala~~~~~~~~~~~   73 (265)
T d1r7ra3          40 PSKGVLFYGPPGCGKTLLAKAIANECQANFISIK   73 (265)
T ss_dssp             CCCEEEEBCCTTSSHHHHHHHHHHHTTCEEEEEC
T ss_pred             CCCeEEEECCCCCcchhHHHHHHHHhCCcEEEEE
Confidence            4456999999999999999999999999977765

>d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.82  E-value=4.8e-05  Score=58.89  Aligned_cols=54  Identities=17%  Similarity=0.110  Sum_probs=39.4

Q ss_pred             CCeEEEEEcCCCCCchHHHHHHHHHhCCCeeeCchhhhhccCCCCchHHHHHHHHHcCC
Q 030464           77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGE  135 (177)
Q Consensus        77 ~~~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~dLlr~el~~~s~lgk~i~~~l~~G~  135 (177)
                      |++-|+|-|+-||||||+++.|++.+.-...-    ++ +-...+.+|+.+++.+....
T Consensus         2 kGk~I~iEG~DGsGKST~~~~L~~~L~~~~~~----~~-~p~~~~~~g~~ir~~l~~~~   55 (214)
T d1tmka_           2 RGKLILIEGLDRTGKTTQCNILYKKLQPNCKL----LK-FPERSTRIGGLINEYLTDDS   55 (214)
T ss_dssp             CCCEEEEEESTTSSHHHHHHHHHHHTTTSEEE----EE-SSCTTSHHHHHHHHHHHCTT
T ss_pred             CeEEEEEECCCCCcHHHHHHHHHHHHHhCCEE----EE-ECCCCchHhHhHHHhhhhcc
Confidence            67889999999999999999999998643221    11 22345667888888776543

>d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyribonucleoside kinase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=97.77  E-value=5.4e-06  Score=62.26  Aligned_cols=34  Identities=12%  Similarity=0.034  Sum_probs=29.4

Q ss_pred             cCCCeEEEEEcCCCCCchHHHHHHHHHhCCCeee
Q 030464           75 RRRGVHWAFIGSPRAKKHVYAEMLSKLLEVPRIS  108 (177)
Q Consensus        75 ~~~~~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is  108 (177)
                      ..+|+.|+|.|+.||||||+++.|++.++-..+.
T Consensus         6 ~~kp~~I~ieG~~GsGKTTl~~~L~~~l~~~~~~   39 (197)
T d2vp4a1           6 GTQPFTVLIEGNIGSGKTTYLNHFEKYKNDICLL   39 (197)
T ss_dssp             TCCCEEEEEECSTTSCHHHHHHTTGGGTTTEEEE
T ss_pred             CCCceEEEEECCCCCCHHHHHHHHHHHhCCcEEE
Confidence            3688899999999999999999999998765543

>d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.73  E-value=1.1e-05  Score=60.33  Aligned_cols=31  Identities=16%  Similarity=0.131  Sum_probs=24.9

Q ss_pred             CeEEEEEcCCCCCchHHHHHHHHHhCCCeee
Q 030464           78 GVHWAFIGSPRAKKHVYAEMLSKLLEVPRIS  108 (177)
Q Consensus        78 ~~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is  108 (177)
                      +..|+|+||+||||+|+++.|.+.+.-.+++
T Consensus         2 G~iivl~GpsG~GK~tl~~~L~~~~~~~~~~   32 (182)
T d1znwa1           2 GRVVVLSGPSAVGKSTVVRCLRERIPNLHFS   32 (182)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHHSTTCEEC
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhhCCCCeEE
Confidence            4568899999999999999999987433333

>d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.72  E-value=1e-05  Score=64.62  Aligned_cols=33  Identities=12%  Similarity=0.070  Sum_probs=29.3

Q ss_pred             CeEEEEEcCCCCCchHHHHHHHHHhCCCeeeCc
Q 030464           78 GVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMS  110 (177)
Q Consensus        78 ~~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~  110 (177)
                      +..|++.||||+|||++++.+|+..+.+.+.+.
T Consensus        38 ~~giLL~GppGtGKT~l~~ala~~~~~~~~~i~   70 (258)
T d1e32a2          38 PRGILLYGPPGTGKTLIARAVANETGAFFFLIN   70 (258)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHTTCEEEEEC
T ss_pred             CceeEEecCCCCCchHHHHHHHHHhCCeEEEEE
Confidence            445899999999999999999999999877765

>d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein Ygr205W
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.65  E-value=1.4e-05  Score=65.78  Aligned_cols=39  Identities=13%  Similarity=0.108  Sum_probs=31.1

Q ss_pred             CCCeEEEEEcCCCCCchHHHHHHHHHh--------CCCeeeCchhhh
Q 030464           76 RRGVHWAFIGSPRAKKHVYAEMLSKLL--------EVPRISMSSIVR  114 (177)
Q Consensus        76 ~~~~~IlIiGpPGSGKSTlA~~LAk~l--------gl~~Is~~dLlr  114 (177)
                      .+|..|-|.|++||||||+|..|.+.+        .+..||++|++.
T Consensus        25 ~~P~iIGi~G~qGSGKSTl~~~l~~~L~~~~~~~~~v~~iS~DdfY~   71 (286)
T d1odfa_          25 KCPLFIFFSGPQGSGKSFTSIQIYNHLMEKYGGEKSIGYASIDDFYL   71 (286)
T ss_dssp             CSCEEEEEECCTTSSHHHHHHHHHHHHHHHHGGGSCEEEEEGGGGBC
T ss_pred             CCCEEEEeECCCCCCHHHHHHHHHHHHHHHhCCCcceEeeccCCCCC
Confidence            357888899999999999998876543        356789999864

>d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Papillomavirus large T antigen helicase domain
species: Simian virus 40 [TaxId: 10633]

Probab=97.64  E-value=1.6e-05  Score=67.10  Aligned_cols=34  Identities=21%  Similarity=0.283  Sum_probs=31.0

Q ss_pred             CCCeEEEEEcCCCCCchHHHHHHHHHhCCCeeeC
Q 030464           76 RRGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISM  109 (177)
Q Consensus        76 ~~~~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~  109 (177)
                      .++..++|.||||+|||++|..||+.+|.+++++
T Consensus       152 ~~~~~~~~~g~~~~gk~~~~~~~~~~~~~~~i~i  185 (362)
T d1svma_         152 PKKRYWLFKGPIDSGKTTLAAALLELCGGKALNV  185 (362)
T ss_dssp             TTCCEEEEECSTTSSHHHHHHHHHHHHCCEEECC
T ss_pred             CCcCeEEEECCCCCCHHHHHHHHHHHcCCCEEEE
Confidence            4556899999999999999999999999999886

>d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=97.62  E-value=1.5e-05  Score=61.40  Aligned_cols=28  Identities=29%  Similarity=0.226  Sum_probs=24.0

Q ss_pred             CCeEEEEEcCCCCCchHHHHHHHHHhCC
Q 030464           77 RGVHWAFIGSPRAKKHVYAEMLSKLLEV  104 (177)
Q Consensus        77 ~~~~IlIiGpPGSGKSTlA~~LAk~lgl  104 (177)
                      +...++|.||||+||||+|+.+|+.++.
T Consensus        44 ~~~~lll~Gp~G~GKTtla~~iak~l~~   71 (231)
T d1iqpa2          44 SMPHLLFAGPPGVGKTTAALALARELFG   71 (231)
T ss_dssp             CCCEEEEESCTTSSHHHHHHHHHHHHHG
T ss_pred             CCCeEEEECCCCCcHHHHHHHHHHHHHh
Confidence            3456899999999999999999998643

>d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=97.58  E-value=2e-05  Score=64.94  Aligned_cols=34  Identities=24%  Similarity=0.317  Sum_probs=28.3

Q ss_pred             CCCe-EEEEEcCCCCCchHHHHHHHHHhCCCeeeC
Q 030464           76 RRGV-HWAFIGSPRAKKHVYAEMLSKLLEVPRISM  109 (177)
Q Consensus        76 ~~~~-~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~  109 (177)
                      .+|. .++|+||||+|||.+|+.||+.++.+++.+
T Consensus        49 ~~p~~~~lf~Gp~GvGKT~lak~la~~l~~~~i~~   83 (315)
T d1r6bx3          49 HKPVGSFLFAGPTGVGKTEVTVQLSKALGIELLRF   83 (315)
T ss_dssp             TSCSEEEEEECSTTSSHHHHHHHHHHHHTCEEEEE
T ss_pred             CCCceEEEEECCCcchhHHHHHHHHhhccCCeeEe
Confidence            3454 578999999999999999999998876543

>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6, N-domain
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=97.55  E-value=2.4e-05  Score=60.08  Aligned_cols=27  Identities=22%  Similarity=0.236  Sum_probs=23.9

Q ss_pred             CCeEEEEEcCCCCCchHHHHHHHHHhC
Q 030464           77 RGVHWAFIGSPRAKKHVYAEMLSKLLE  103 (177)
Q Consensus        77 ~~~~IlIiGpPGSGKSTlA~~LAk~lg  103 (177)
                      .+..++|.||||+|||++++.|++.+.
T Consensus        42 ~~~~lll~GppGtGKT~l~~~l~~~l~   68 (276)
T d1fnna2          42 HYPRATLLGRPGTGKTVTLRKLWELYK   68 (276)
T ss_dssp             SCCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred             CCCceEEECCCCCCHHHHHHHHHHHHh
Confidence            456799999999999999999999873

>d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.54  E-value=2.3e-05  Score=59.47  Aligned_cols=24  Identities=17%  Similarity=0.061  Sum_probs=22.0

Q ss_pred             EEEEcCCCCCchHHHHHHHHHhCC
Q 030464           81 WAFIGSPRAKKHVYAEMLSKLLEV  104 (177)
Q Consensus        81 IlIiGpPGSGKSTlA~~LAk~lgl  104 (177)
                      |+|+||+||||+|+++.|++.++-
T Consensus         3 Ivl~GPsGsGK~tl~~~L~~~~~~   26 (190)
T d1lvga_           3 VVLSGPSGAGKSTLLKKLFQEHSS   26 (190)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHHTT
T ss_pred             EEEECCCCCCHHHHHHHHHHhCCC
Confidence            789999999999999999998763

>d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Pantothenate kinase PanK
species: Escherichia coli [TaxId: 562]

Probab=97.49  E-value=3e-05  Score=64.25  Aligned_cols=39  Identities=26%  Similarity=0.255  Sum_probs=33.2

Q ss_pred             CCCeEEEEEcCCCCCchHHHHHHHHHhC-------CCeeeCchhhh
Q 030464           76 RRGVHWAFIGSPRAKKHVYAEMLSKLLE-------VPRISMSSIVR  114 (177)
Q Consensus        76 ~~~~~IlIiGpPGSGKSTlA~~LAk~lg-------l~~Is~~dLlr  114 (177)
                      ..|..|.|.|++||||||+|+.|++.+.       +.+|++++.+.
T Consensus        78 k~P~iIGIaG~sgSGKSTla~~L~~lL~~~~~~~~v~~Is~D~F~~  123 (308)
T d1sq5a_          78 RIPYIISIAGSVAVGKSTTARVLQALLSRWPEHRRVELITTDGFLH  123 (308)
T ss_dssp             CCCEEEEEEECTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGGBC
T ss_pred             CCCEEEEEeCCCCCCCcHHHHHHHHHHhhhcCCCceEEEeeeeeEC
Confidence            5678889999999999999999998763       45789998864

>d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.45  E-value=2.4e-05  Score=60.11  Aligned_cols=27  Identities=22%  Similarity=0.150  Sum_probs=23.7

Q ss_pred             eEEEEEcCCCCCchHHHHHHHHHhCCC
Q 030464           79 VHWAFIGSPRAKKHVYAEMLSKLLEVP  105 (177)
Q Consensus        79 ~~IlIiGpPGSGKSTlA~~LAk~lgl~  105 (177)
                      ..++|.||||+||||+|+.|++.++..
T Consensus        37 ~~~ll~Gp~G~GKTt~a~~la~~l~~~   63 (224)
T d1sxjb2          37 PHMIISGMPGIGKTTSVHCLAHELLGR   63 (224)
T ss_dssp             CCEEEECSTTSSHHHHHHHHHHHHHGG
T ss_pred             CeEEEECCCCCCchhhHHHHHHHHhcc
Confidence            358999999999999999999987654

>d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.43  E-value=3.5e-05  Score=57.94  Aligned_cols=29  Identities=24%  Similarity=0.124  Sum_probs=24.4

Q ss_pred             eEEEEEcCCCCCchHHHHHHHHHh---CCCee
Q 030464           79 VHWAFIGSPRAKKHVYAEMLSKLL---EVPRI  107 (177)
Q Consensus        79 ~~IlIiGpPGSGKSTlA~~LAk~l---gl~~I  107 (177)
                      +.|+|.|..||||||+++.|++.+   |+.++
T Consensus         1 mlI~ieG~dGsGKST~~~~L~~~l~~~g~~v~   32 (208)
T d1gsia_           1 MLIAIEGVDGAGKRTLVEKLSGAFRAAGRSVA   32 (208)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHHHHTTCCEE
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHHHCCCCEE
Confidence            468999999999999999999876   55543

>d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.42  E-value=3.1e-05  Score=58.37  Aligned_cols=23  Identities=13%  Similarity=0.039  Sum_probs=21.3

Q ss_pred             EEEEcCCCCCchHHHHHHHHHhC
Q 030464           81 WAFIGSPRAKKHVYAEMLSKLLE  103 (177)
Q Consensus        81 IlIiGpPGSGKSTlA~~LAk~lg  103 (177)
                      |+|+||+||||+|++++|++.+.
T Consensus         4 Ivl~GpsG~GK~tl~~~L~~~~~   26 (186)
T d1gkya_           4 IVISGPSGTGKSTLLKKLFAEYP   26 (186)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHCT
T ss_pred             EEEECCCCCCHHHHHHHHHHhCC
Confidence            78999999999999999999864

>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C5
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.40  E-value=3.4e-05  Score=59.52  Aligned_cols=26  Identities=15%  Similarity=0.093  Sum_probs=23.1

Q ss_pred             CCeEEEEEcCCCCCchHHHHHHHHHh
Q 030464           77 RGVHWAFIGSPRAKKHVYAEMLSKLL  102 (177)
Q Consensus        77 ~~~~IlIiGpPGSGKSTlA~~LAk~l  102 (177)
                      ..+.++|.||||+||||+++.+++.+
T Consensus        32 ~~~~lll~Gp~G~GKTt~~~~la~~l   57 (252)
T d1sxje2          32 DLPHLLLYGPNGTGKKTRCMALLESI   57 (252)
T ss_dssp             CCCCEEEECSTTSSHHHHHHTHHHHH
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHhh
Confidence            34468999999999999999999986

>d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermotoga maritima [TaxId: 2336]

Probab=97.40  E-value=5.3e-05  Score=59.64  Aligned_cols=28  Identities=14%  Similarity=0.138  Sum_probs=24.2

Q ss_pred             cCCCeEEEEEcCCCCCchHHHHHHHHHh
Q 030464           75 RRRGVHWAFIGSPRAKKHVYAEMLSKLL  102 (177)
Q Consensus        75 ~~~~~~IlIiGpPGSGKSTlA~~LAk~l  102 (177)
                      +.+|..|+|+||+|+||||.+.+||..+
T Consensus         8 ~~~p~vi~lvGptGvGKTTTiAKLAa~~   35 (213)
T d1vmaa2           8 PEPPFVIMVVGVNGTGKTTSCGKLAKMF   35 (213)
T ss_dssp             SSSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence            4677788999999999999999998765

>d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C2
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.39  E-value=3.9e-05  Score=58.65  Aligned_cols=24  Identities=33%  Similarity=0.376  Sum_probs=21.7

Q ss_pred             eEEEEEcCCCCCchHHHHHHHHHh
Q 030464           79 VHWAFIGSPRAKKHVYAEMLSKLL  102 (177)
Q Consensus        79 ~~IlIiGpPGSGKSTlA~~LAk~l  102 (177)
                      ..++|.||||+||||+++.+++++
T Consensus        34 ~~lll~Gp~G~GKTtl~~~i~~~l   57 (237)
T d1sxjd2          34 PHMLFYGPPGTGKTSTILALTKEL   57 (237)
T ss_dssp             CCEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CeEEEECCCCCChHHHHHHHHHHH
Confidence            458999999999999999999975

>d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxycytidine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.37  E-value=2.6e-05  Score=59.68  Aligned_cols=29  Identities=24%  Similarity=0.205  Sum_probs=25.5

Q ss_pred             CCeEEEEEcCCCCCchHHHHHHHHHhCCC
Q 030464           77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVP  105 (177)
Q Consensus        77 ~~~~IlIiGpPGSGKSTlA~~LAk~lgl~  105 (177)
                      |++.|+|.|+-||||||+++.|++.+.-.
T Consensus         1 ~~k~I~ieG~dGsGKST~~~~L~~~l~~~   29 (241)
T d1p5zb_           1 RIKKISIEGNIAAGKSTFVNILKQLCEDW   29 (241)
T ss_dssp             CCEEEEEECSTTSSHHHHHTTTGGGCTTE
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHHhcC
Confidence            56789999999999999999999987533

>d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.36  E-value=5.2e-05  Score=55.56  Aligned_cols=24  Identities=17%  Similarity=0.246  Sum_probs=20.7

Q ss_pred             eEEEEEcCCCCCchHHHHHHHHHh
Q 030464           79 VHWAFIGSPRAKKHVYAEMLSKLL  102 (177)
Q Consensus        79 ~~IlIiGpPGSGKSTlA~~LAk~l  102 (177)
                      ..|.|+|.+||||||++.+|.+.+
T Consensus         2 kii~I~G~~gSGKTTli~~l~~~L   25 (165)
T d1xjca_           2 NVWQVVGYKHSGKTTLMEKWVAAA   25 (165)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             cEEEEEeCCCCCHHHHHHHHHHHH
Confidence            345699999999999999998865

>d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyguanosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.33  E-value=6.9e-05  Score=57.66  Aligned_cols=32  Identities=13%  Similarity=0.162  Sum_probs=28.0

Q ss_pred             CeEEEEEcCCCCCchHHHHHHHHHhCCCeeeC
Q 030464           78 GVHWAFIGSPRAKKHVYAEMLSKLLEVPRISM  109 (177)
Q Consensus        78 ~~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~  109 (177)
                      |+.|+|-|+-||||||+++.|++.++-..+..
T Consensus         2 pk~IviEG~~GsGKST~~~~L~~~l~~~~i~~   33 (241)
T d2ocpa1           2 PRRLSIEGNIAVGKSTFVKLLTKTYPEWHVAT   33 (241)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHHHCTTSEEEC
T ss_pred             CeEEEEECCCCCcHHHHHHHHHHHHhhcCCcc
Confidence            67899999999999999999999987766653

>d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.32  E-value=5.4e-05  Score=57.86  Aligned_cols=26  Identities=23%  Similarity=0.259  Sum_probs=22.8

Q ss_pred             eEEEEEcCCCCCchHHHHHHHHHhCC
Q 030464           79 VHWAFIGSPRAKKHVYAEMLSKLLEV  104 (177)
Q Consensus        79 ~~IlIiGpPGSGKSTlA~~LAk~lgl  104 (177)
                      +.++|.||||+||||+++.+++.++.
T Consensus        36 ~~lLl~Gp~G~GKttl~~~la~~l~~   61 (227)
T d1sxjc2          36 PHLLFYGPPGTGKTSTIVALAREIYG   61 (227)
T ss_dssp             CCEEEECSSSSSHHHHHHHHHHHHHT
T ss_pred             CeEEEECCCCCChhHHHHHHHHHhhc
Confidence            35889999999999999999998653

>d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=97.31  E-value=8.9e-05  Score=56.81  Aligned_cols=48  Identities=8%  Similarity=-0.062  Sum_probs=35.1

Q ss_pred             CCccccCccCc-ccCCCeEEEEEcCCCCCchHHHHHHHHHh-----CCCeeeCc
Q 030464           63 RSVTLPDTEGR-ERRRGVHWAFIGSPRAKKHVYAEMLSKLL-----EVPRISMS  110 (177)
Q Consensus        63 ~~~~~~~~~~~-~~~~~~~IlIiGpPGSGKSTlA~~LAk~l-----gl~~Is~~  110 (177)
                      .-.+.+|.... ...++-.++|.|+||+|||++|.+++...     .+.++++.
T Consensus        10 TG~~~LD~~l~GGi~~gsl~li~G~pGsGKT~l~~qia~~~~~~~~~~~~is~e   63 (242)
T d1tf7a2          10 SGVVRLDEMCGGGFFKDSIILATGATGTGKTLLVSRFVENACANKERAILFAYE   63 (242)
T ss_dssp             CSCHHHHHHTTSSEESSCEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEESS
T ss_pred             CCcHHHHHhhcCCCcCCeEEEEEeCCCCCHHHHHHHHHHHHHHhccccceeecc
Confidence            34455555544 34678889999999999999999998874     34567664

>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6-like protein APE0152, N-terminal domain
species: Aeropyrum pernix [TaxId: 56636]

Probab=97.30  E-value=6.8e-05  Score=57.73  Aligned_cols=23  Identities=22%  Similarity=0.203  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCCchHHHHHHHHHh
Q 030464           80 HWAFIGSPRAKKHVYAEMLSKLL  102 (177)
Q Consensus        80 ~IlIiGpPGSGKSTlA~~LAk~l  102 (177)
                      .++|.||||+|||++++.+++.+
T Consensus        48 ~l~l~GppGtGKT~l~~~l~~~l   70 (287)
T d1w5sa2          48 IYGSIGRVGIGKTTLAKFTVKRV   70 (287)
T ss_dssp             EEECTTCCSSSHHHHHHHHHHHH
T ss_pred             EEEeECCCCCCHHHHHHHHHHHH
Confidence            34567999999999999999876

>d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpX
species: Helicobacter pylori [TaxId: 210]

Probab=97.29  E-value=7e-05  Score=63.05  Aligned_cols=34  Identities=24%  Similarity=0.334  Sum_probs=28.9

Q ss_pred             CCeEEEEEcCCCCCchHHHHHHHHHhCCCeeeCc
Q 030464           77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMS  110 (177)
Q Consensus        77 ~~~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~  110 (177)
                      .+.+++|+||+|+|||.+|++||+.++.+.+.++
T Consensus        67 p~~niLfiGPTGvGKTElAk~LA~~~~~~~ir~D  100 (364)
T d1um8a_          67 SKSNILLIGPTGSGKTLMAQTLAKHLDIPIAISD  100 (364)
T ss_dssp             CCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEE
T ss_pred             CCcceeeeCCCCccHHHHHHHHHhhcccceeehh
Confidence            4567999999999999999999999887766543

>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: ATP(GTP)-binding protein PAB0955
species: Pyrococcus abyssi [TaxId: 29292]

Probab=97.27  E-value=7.8e-05  Score=56.76  Aligned_cols=24  Identities=17%  Similarity=0.338  Sum_probs=21.2

Q ss_pred             eEEEEEcCCCCCchHHHHHHHHHh
Q 030464           79 VHWAFIGSPRAKKHVYAEMLSKLL  102 (177)
Q Consensus        79 ~~IlIiGpPGSGKSTlA~~LAk~l  102 (177)
                      +.|+|+|++||||||+.++|.+.+
T Consensus         1 ~vi~v~G~~GsGKTTLl~~ll~~~   24 (244)
T d1yrba1           1 MIVVFVGTAGSGKTTLTGEFGRYL   24 (244)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CEEEEEcCCCCcHHHHHHHHHHHH
Confidence            478999999999999999997654

>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Thermus aquaticus [TaxId: 271]

Probab=97.26  E-value=0.00012  Score=57.22  Aligned_cols=26  Identities=19%  Similarity=0.257  Sum_probs=21.9

Q ss_pred             CCeEEEEEcCCCCCchHHHHHHHHHh
Q 030464           77 RGVHWAFIGSPRAKKHVYAEMLSKLL  102 (177)
Q Consensus        77 ~~~~IlIiGpPGSGKSTlA~~LAk~l  102 (177)
                      .+-.|+|+||+|+||||.+.+||..+
T Consensus         9 ~~~vi~lvGp~GvGKTTTiaKLA~~~   34 (207)
T d1ls1a2           9 DRNLWFLVGLQGSGKTTTAAKLALYY   34 (207)
T ss_dssp             SSEEEEEECCTTTTHHHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence            44567889999999999999998765

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

Probab=97.23  E-value=8.8e-05  Score=52.57  Aligned_cols=23  Identities=17%  Similarity=0.044  Sum_probs=20.8

Q ss_pred             eEEEEEcCCCCCchHHHHHHHHH
Q 030464           79 VHWAFIGSPRAKKHVYAEMLSKL  101 (177)
Q Consensus        79 ~~IlIiGpPGSGKSTlA~~LAk~  101 (177)
                      ++|+|+|+|||||||+..+|...
T Consensus         1 ikivlvG~~~vGKSsLi~~l~~~   23 (160)
T d1r8sa_           1 MRILMVGLDAAGKTTILYKLKLG   23 (160)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhcC
Confidence            58999999999999999999754

>d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Phosphoribulokinase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=97.19  E-value=8.2e-05  Score=61.12  Aligned_cols=39  Identities=15%  Similarity=0.189  Sum_probs=29.4

Q ss_pred             CCCeEEEEEcCCCCCchHHHHHHHHHh---CC--CeeeCchhhh
Q 030464           76 RRGVHWAFIGSPRAKKHVYAEMLSKLL---EV--PRISMSSIVR  114 (177)
Q Consensus        76 ~~~~~IlIiGpPGSGKSTlA~~LAk~l---gl--~~Is~~dLlr  114 (177)
                      .|.+.|.|.|++||||||+|+.|++.+   ++  .+|+.++..+
T Consensus         2 ~k~pIIgIaG~SGSGKTTva~~l~~i~~~~~v~~~iI~~Dsfyr   45 (288)
T d1a7ja_           2 KKHPIISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIEGDAFHR   45 (288)
T ss_dssp             TTSCEEEEESCC---CCTHHHHHHHHHHHHTCCEEEEEGGGGBS
T ss_pred             CCCCEEEEECCCCCcHHHHHHHHHHHHhhcCCCeEEEeCCCCCc
Confidence            466789999999999999999998866   44  4899888764

>d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Chromosomal replication initiation factor DnaA
species: Aquifex aeolicus [TaxId: 63363]

Probab=97.14  E-value=0.00032  Score=54.29  Aligned_cols=35  Identities=14%  Similarity=0.011  Sum_probs=27.7

Q ss_pred             EEEEcCCCCCchHHHHHHHHHh-----CCCeeeCchhhhh
Q 030464           81 WAFIGSPRAKKHVYAEMLSKLL-----EVPRISMSSIVRQ  115 (177)
Q Consensus        81 IlIiGpPGSGKSTlA~~LAk~l-----gl~~Is~~dLlr~  115 (177)
                      ++|.|+||+|||++++.+++.+     .+.+++..++...
T Consensus        39 l~l~G~~G~GKTHLl~A~~~~~~~~~~~~~~~~~~~~~~~   78 (213)
T d1l8qa2          39 IFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSADDFAQA   78 (213)
T ss_dssp             EEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHHHHhccCccceEEechHHHHHH
Confidence            7899999999999999998875     3456776665543

>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Archaeon Acidianus ambivalens [TaxId: 2283]

Probab=97.13  E-value=0.00019  Score=56.29  Aligned_cols=27  Identities=15%  Similarity=0.098  Sum_probs=19.1

Q ss_pred             CCCeEEEEEcCCCCCchHHHHHHHHHh
Q 030464           76 RRGVHWAFIGSPRAKKHVYAEMLSKLL  102 (177)
Q Consensus        76 ~~~~~IlIiGpPGSGKSTlA~~LAk~l  102 (177)
                      .+|.+|+|+||+|+||||.+.+||..+
T Consensus        10 k~p~vi~lvGptGvGKTTTiAKLA~~~   36 (211)
T d1j8yf2          10 KIPYVIMLVGVQGTGKATTAGKLAYFY   36 (211)
T ss_dssp             SSSEEEEEECSCCC----HHHHHHHHH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence            356778889999999999999998765

>d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: NTPase P4
species: Bacteriophage phi-12 [TaxId: 161736]

Probab=97.12  E-value=0.0001  Score=61.42  Aligned_cols=36  Identities=11%  Similarity=0.063  Sum_probs=27.9

Q ss_pred             EEEEcCCCCCchHHHHHHHHHhC--CC--eeeCchhhhhc
Q 030464           81 WAFIGSPRAKKHVYAEMLSKLLE--VP--RISMSSIVRQD  116 (177)
Q Consensus        81 IlIiGpPGSGKSTlA~~LAk~lg--l~--~Is~~dLlr~e  116 (177)
                      ++|.||||+|||.+|+.||...+  ++  .++..+++...
T Consensus       126 ~l~~G~pG~GKT~la~ala~~~~~~~~~~~~~~~~~~~~~  165 (321)
T d1w44a_         126 VIVTGKGNSGKTPLVHALGEALGGKDKYATVRFGEPLSGY  165 (321)
T ss_dssp             EEEECSSSSCHHHHHHHHHHHHHTTSCCEEEEBSCSSTTC
T ss_pred             EEEECCCCccHHHHHHHHHHHhcCCCCeEEEEhhHhhhcc
Confidence            45579999999999999999975  44  45666777653

>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=97.10  E-value=0.00013  Score=52.77  Aligned_cols=27  Identities=22%  Similarity=0.266  Sum_probs=23.7

Q ss_pred             cCCCeEEEEEcCCCCCchHHHHHHHHH
Q 030464           75 RRRGVHWAFIGSPRAKKHVYAEMLSKL  101 (177)
Q Consensus        75 ~~~~~~IlIiGpPGSGKSTlA~~LAk~  101 (177)
                      ..+..+|+|+|.||+||||+..+|...
T Consensus        10 ~~k~~kI~lvG~~~vGKTsLl~~l~~~   36 (186)
T d1f6ba_          10 YKKTGKLVFLGLDNAGKTTLLHMLKDD   36 (186)
T ss_dssp             TTCCEEEEEEEETTSSHHHHHHHHSCC
T ss_pred             cCCCCEEEEECCCCCCHHHHHHHHhCC
Confidence            367899999999999999999998553

>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermus aquaticus [TaxId: 271]

Probab=97.07  E-value=0.00019  Score=56.12  Aligned_cols=27  Identities=15%  Similarity=0.155  Sum_probs=23.2

Q ss_pred             CCCeEEEEEcCCCCCchHHHHHHHHHh
Q 030464           76 RRGVHWAFIGSPRAKKHVYAEMLSKLL  102 (177)
Q Consensus        76 ~~~~~IlIiGpPGSGKSTlA~~LAk~l  102 (177)
                      .++..|+|+||+||||||.+.+||..+
T Consensus         4 ~~~~vi~lvGptGvGKTTTiaKLA~~~   30 (207)
T d1okkd2           4 PKGRVVLVVGVNGVGKTTTIAKLGRYY   30 (207)
T ss_dssp             CSSSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence            366788999999999999999998765

>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Escherichia coli [TaxId: 562]

Probab=97.05  E-value=0.00019  Score=56.38  Aligned_cols=27  Identities=11%  Similarity=0.116  Sum_probs=23.3

Q ss_pred             CCCeEEEEEcCCCCCchHHHHHHHHHh
Q 030464           76 RRGVHWAFIGSPRAKKHVYAEMLSKLL  102 (177)
Q Consensus        76 ~~~~~IlIiGpPGSGKSTlA~~LAk~l  102 (177)
                      .+|..|+|+||+|+||||.+.+||..+
T Consensus         7 ~~p~vi~lvGptGvGKTTTiAKLA~~~   33 (211)
T d2qy9a2           7 KAPFVILMVGVNGVGKTTTIGKLARQF   33 (211)
T ss_dssp             CTTEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence            456788899999999999999999665

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

Probab=97.04  E-value=0.00013  Score=53.35  Aligned_cols=28  Identities=18%  Similarity=0.211  Sum_probs=24.3

Q ss_pred             cccCCCeEEEEEcCCCCCchHHHHHHHH
Q 030464           73 RERRRGVHWAFIGSPRAKKHVYAEMLSK  100 (177)
Q Consensus        73 ~~~~~~~~IlIiGpPGSGKSTlA~~LAk  100 (177)
                      +.+.+.++|+|+|.||+||||+..+|..
T Consensus        11 ~~~~~~~kI~vvG~~~vGKSsLi~~l~~   38 (176)
T d1fzqa_          11 SAPDQEVRILLLGLDNAGKTTLLKQLAS   38 (176)
T ss_dssp             SCCSSCEEEEEEESTTSSHHHHHHHHCC
T ss_pred             CCCCCEEEEEEECCCCCCHHHHHHHHhc
Confidence            4456889999999999999999999844

>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Archaeal ATPase SSO1545
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=97.03  E-value=0.00021  Score=54.39  Aligned_cols=30  Identities=20%  Similarity=0.142  Sum_probs=25.7

Q ss_pred             eEEEEEcCCCCCchHHHHHHHHHhCCCeee
Q 030464           79 VHWAFIGSPRAKKHVYAEMLSKLLEVPRIS  108 (177)
Q Consensus        79 ~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is  108 (177)
                      ..|+|.|++|+|||++++++++..+..+.-
T Consensus        30 ~~i~i~G~~G~GKTsLl~~~~~~~~~~~~~   59 (283)
T d2fnaa2          30 PITLVLGLRRTGKSSIIKIGINELNLPYIY   59 (283)
T ss_dssp             SEEEEEESTTSSHHHHHHHHHHHHTCCEEE
T ss_pred             CEEEEEcCCCCcHHHHHHHHHHHCCCCeEE
Confidence            468899999999999999999988776543

>d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Escherichia coli [TaxId: 562]

Probab=97.00  E-value=0.0002  Score=55.35  Aligned_cols=26  Identities=19%  Similarity=0.153  Sum_probs=23.2

Q ss_pred             CeEEEEEcCCCCCchHHHHHHHHHhC
Q 030464           78 GVHWAFIGSPRAKKHVYAEMLSKLLE  103 (177)
Q Consensus        78 ~~~IlIiGpPGSGKSTlA~~LAk~lg  103 (177)
                      +..|+|+||+||||+|+.+.|.+.+.
T Consensus         2 G~livi~GPSG~GK~tl~~~L~~~~p   27 (205)
T d1s96a_           2 GTLYIVSAPSGAGKSSLIQALLKTQP   27 (205)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhhCC
Confidence            56789999999999999999999864

>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL2 [TaxId: 10090]

Probab=96.99  E-value=0.00019  Score=51.90  Aligned_cols=25  Identities=16%  Similarity=0.189  Sum_probs=22.3

Q ss_pred             CCeEEEEEcCCCCCchHHHHHHHHH
Q 030464           77 RGVHWAFIGSPRAKKHVYAEMLSKL  101 (177)
Q Consensus        77 ~~~~IlIiGpPGSGKSTlA~~LAk~  101 (177)
                      |.++|+|+|+||+|||++..+|...
T Consensus         1 k~~ki~ivG~~~~GKTsLi~~l~~~   25 (165)
T d1ksha_           1 RELRLLMLGLDNAGKTTILKKFNGE   25 (165)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHTTC
T ss_pred             CcEEEEEECCCCCCHHHHHHHHcCC
Confidence            5689999999999999999998664

>d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=96.97  E-value=0.00021  Score=58.70  Aligned_cols=28  Identities=25%  Similarity=0.407  Sum_probs=24.0

Q ss_pred             cCCCe-EEEEEcCCCCCchHHHHHHHHHh
Q 030464           75 RRRGV-HWAFIGSPRAKKHVYAEMLSKLL  102 (177)
Q Consensus        75 ~~~~~-~IlIiGpPGSGKSTlA~~LAk~l  102 (177)
                      +.+|. .++|.||+|+|||.+|+.||+.+
T Consensus        49 ~~kp~~~~lf~Gp~G~GKt~lak~la~~l   77 (315)
T d1qvra3          49 PNRPIGSFLFLGPTGVGKTELAKTLAATL   77 (315)
T ss_dssp             SSSCSEEEEEBSCSSSSHHHHHHHHHHHH
T ss_pred             CCCCceEEEEECCCcchHHHHHHHHHHHh
Confidence            45666 56788999999999999999986

>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL1 [TaxId: 9606]

Probab=96.96  E-value=0.00027  Score=50.09  Aligned_cols=26  Identities=19%  Similarity=0.073  Sum_probs=22.9

Q ss_pred             CCCeEEEEEcCCCCCchHHHHHHHHH
Q 030464           76 RRGVHWAFIGSPRAKKHVYAEMLSKL  101 (177)
Q Consensus        76 ~~~~~IlIiGpPGSGKSTlA~~LAk~  101 (177)
                      .+.++|+|+|.||+||||+..++...
T Consensus         3 ~ke~kI~ivG~~~vGKSSLi~~~~~~   28 (169)
T d1upta_           3 TREMRILILGLDGAGKTTILYRLQVG   28 (169)
T ss_dssp             SSCEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             CcceEEEEECCCCCCHHHHHHHHhCC
Confidence            35689999999999999999999764

>d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.96  E-value=0.00021  Score=51.79  Aligned_cols=29  Identities=17%  Similarity=0.098  Sum_probs=24.8

Q ss_pred             ccCCCeEEEEEcCCCCCchHHHHHHHHHh
Q 030464           74 ERRRGVHWAFIGSPRAKKHVYAEMLSKLL  102 (177)
Q Consensus        74 ~~~~~~~IlIiGpPGSGKSTlA~~LAk~l  102 (177)
                      ...++-.++|.|+||||||++|..++-..
T Consensus        19 Gi~~G~v~~i~G~~GsGKT~l~l~la~~~   47 (242)
T d1n0wa_          19 GIETGSITEMFGEFRTGKTQICHTLAVTC   47 (242)
T ss_dssp             SEETTSEEEEECCTTSSHHHHHHHHHHHT
T ss_pred             CCcCCEEEEEEeCCCCCHHHHHHHHHHHH
Confidence            34577889999999999999999998654

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

Probab=96.89  E-value=0.00027  Score=51.19  Aligned_cols=26  Identities=15%  Similarity=0.042  Sum_probs=23.0

Q ss_pred             CCCeEEEEEcCCCCCchHHHHHHHHH
Q 030464           76 RRGVHWAFIGSPRAKKHVYAEMLSKL  101 (177)
Q Consensus        76 ~~~~~IlIiGpPGSGKSTlA~~LAk~  101 (177)
                      .+.++|+|+|.|||||||+..+|...
T Consensus        13 ~k~~kI~vvG~~~~GKSsLi~rl~~~   38 (177)
T d1zj6a1          13 HQEHKVIIVGLDNAGKTTILYQFSMN   38 (177)
T ss_dssp             TSCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred             CCeEEEEEECCCCCCHHHHHHHHhcC
Confidence            46689999999999999999999764

>d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase-like domain of Cask
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.87  E-value=0.00028  Score=53.08  Aligned_cols=23  Identities=9%  Similarity=0.108  Sum_probs=20.8

Q ss_pred             EEEEEcCCCCCchHHHHHHHHHh
Q 030464           80 HWAFIGSPRAKKHVYAEMLSKLL  102 (177)
Q Consensus        80 ~IlIiGpPGSGKSTlA~~LAk~l  102 (177)
                      .|+|+||+||||+|++++|.+.+
T Consensus         5 ~ivl~Gpsg~GK~tl~~~L~~~~   27 (178)
T d1kgda_           5 TLVLLGAHGVGRRHIKNTLITKH   27 (178)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHC
T ss_pred             cEEEECCCCCCHHHHHHHHHHhC
Confidence            38889999999999999999875

>d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ATPase subunit of magnesium chelatase, BchI
species: Rhodobacter capsulatus [TaxId: 1061]

Probab=96.78  E-value=0.00021  Score=58.09  Aligned_cols=25  Identities=20%  Similarity=0.084  Sum_probs=22.5

Q ss_pred             CeEEEEEcCCCCCchHHHHHHHHHh
Q 030464           78 GVHWAFIGSPRAKKHVYAEMLSKLL  102 (177)
Q Consensus        78 ~~~IlIiGpPGSGKSTlA~~LAk~l  102 (177)
                      ...++|.|+||+|||++|+.+++.+
T Consensus        28 ~h~vLl~G~pG~GKT~lar~~~~iL   52 (333)
T d1g8pa_          28 IGGVLVFGDRGTGKSTAVRALAALL   52 (333)
T ss_dssp             GCCEEEECCGGGCTTHHHHHHHHHS
T ss_pred             CCeEEEECCCCccHHHHHHHHHHhC
Confidence            3479999999999999999999875

>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab23
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.73  E-value=0.00041  Score=50.30  Aligned_cols=23  Identities=13%  Similarity=0.221  Sum_probs=21.0

Q ss_pred             CeEEEEEcCCCCCchHHHHHHHH
Q 030464           78 GVHWAFIGSPRAKKHVYAEMLSK  100 (177)
Q Consensus        78 ~~~IlIiGpPGSGKSTlA~~LAk  100 (177)
                      .++|+|+|.||+|||++..++..
T Consensus         2 ~iKv~liG~~~vGKSsLi~rl~~   24 (164)
T d1z2aa1           2 AIKMVVVGNGAVGKSSMIQRYCK   24 (164)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEEEECCCCcCHHHHHHHHHh
Confidence            47899999999999999999875

>d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=96.69  E-value=0.00038  Score=54.04  Aligned_cols=28  Identities=25%  Similarity=0.290  Sum_probs=24.1

Q ss_pred             CeEEEEEcCCCCCchHHHHHHHHHhCCC
Q 030464           78 GVHWAFIGSPRAKKHVYAEMLSKLLEVP  105 (177)
Q Consensus        78 ~~~IlIiGpPGSGKSTlA~~LAk~lgl~  105 (177)
                      +..++|.||||+|||++|+.+++.++..
T Consensus        34 ~~~~Ll~Gp~G~GKtt~a~~~~~~l~~~   61 (239)
T d1njfa_          34 HHAYLFSGTRGVGKTSIARLLAKGLNCE   61 (239)
T ss_dssp             CSEEEEECSTTSSHHHHHHHHHHHHHCT
T ss_pred             CeeEEEECCCCCcHHHHHHHHHHHhcCc
Confidence            4458999999999999999999987543

>d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=96.69  E-value=0.00095  Score=49.65  Aligned_cols=36  Identities=11%  Similarity=0.016  Sum_probs=26.4

Q ss_pred             ccccCccCc-ccCCCeEEEEEcCCCCCchHHHHHHHH
Q 030464           65 VTLPDTEGR-ERRRGVHWAFIGSPRAKKHVYAEMLSK  100 (177)
Q Consensus        65 ~~~~~~~~~-~~~~~~~IlIiGpPGSGKSTlA~~LAk  100 (177)
                      .+.+|.... ...++-.++|.|+||+|||++|..++.
T Consensus        12 i~~LD~~l~GGi~~G~~~~I~G~~G~GKT~la~~~~~   48 (242)
T d1tf7a1          12 IEGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLY   48 (242)
T ss_dssp             CTTHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHH
T ss_pred             cHHHHHhhcCCCcCCeEEEEEeCCCCCHHHHHHHHHH
Confidence            444554433 345788899999999999999977643

>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.64  E-value=0.00052  Score=48.02  Aligned_cols=22  Identities=27%  Similarity=0.323  Sum_probs=20.3

Q ss_pred             EEEEEcCCCCCchHHHHHHHHH
Q 030464           80 HWAFIGSPRAKKHVYAEMLSKL  101 (177)
Q Consensus        80 ~IlIiGpPGSGKSTlA~~LAk~  101 (177)
                      +|+|+|+|++|||++..+|...
T Consensus         2 KI~liG~~nvGKSSLln~l~~~   23 (166)
T d2qtvb1           2 KLLFLGLDNAGKTTLLHMLKND   23 (166)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            6899999999999999999874

>d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=96.64  E-value=0.00063  Score=52.74  Aligned_cols=26  Identities=23%  Similarity=0.270  Sum_probs=22.8

Q ss_pred             CCeEEEEEcCCCCCchHHHHHHHHHh
Q 030464           77 RGVHWAFIGSPRAKKHVYAEMLSKLL  102 (177)
Q Consensus        77 ~~~~IlIiGpPGSGKSTlA~~LAk~l  102 (177)
                      +.-+++++|+||+|||++++.||++.
T Consensus        42 ~k~n~lLvG~pGVGKTalv~~LA~ri   67 (195)
T d1jbka_          42 TKNNPVLIGEPGVGKTAIVEGLAQRI   67 (195)
T ss_dssp             SSCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CCCCeEEEecCCcccHHHHHHHHHHH
Confidence            44579999999999999999999864

>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable tRNA modification GTPase TrmE (MnmE), G domain
species: Escherichia coli [TaxId: 562]

Probab=96.60  E-value=0.00045  Score=49.38  Aligned_cols=24  Identities=25%  Similarity=0.347  Sum_probs=21.4

Q ss_pred             CeEEEEEcCCCCCchHHHHHHHHH
Q 030464           78 GVHWAFIGSPRAKKHVYAEMLSKL  101 (177)
Q Consensus        78 ~~~IlIiGpPGSGKSTlA~~LAk~  101 (177)
                      +++|+|+|.|++||||+..+|...
T Consensus         1 ~~kI~lvG~~nvGKSsLin~l~~~   24 (161)
T d2gj8a1           1 GMKVVIAGRPNAGKSSLLNALAGR   24 (161)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHTS
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCC
Confidence            478999999999999999999743

>d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=96.60  E-value=0.0006  Score=52.22  Aligned_cols=26  Identities=15%  Similarity=0.042  Sum_probs=23.3

Q ss_pred             CeEEEEEcCCCCCchHHHHHHHHHhC
Q 030464           78 GVHWAFIGSPRAKKHVYAEMLSKLLE  103 (177)
Q Consensus        78 ~~~IlIiGpPGSGKSTlA~~LAk~lg  103 (177)
                      +..++|.||||+||+|+|+.+|+.+.
T Consensus        24 ~h~lLl~Gp~G~GKtt~a~~~a~~l~   49 (207)
T d1a5ta2          24 HHALLIQALPGMGDDALIYALSRYLL   49 (207)
T ss_dssp             CSEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred             CeEEEEECCCCCcHHHHHHHHHHhcc
Confidence            55699999999999999999999774

>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: LAO/AO transport system kinase ArgK
species: Escherichia coli [TaxId: 562]

Probab=96.59  E-value=0.00064  Score=56.26  Aligned_cols=27  Identities=26%  Similarity=0.429  Sum_probs=24.2

Q ss_pred             CCCeEEEEEcCCCCCchHHHHHHHHHh
Q 030464           76 RRGVHWAFIGSPRAKKHVYAEMLSKLL  102 (177)
Q Consensus        76 ~~~~~IlIiGpPGSGKSTlA~~LAk~l  102 (177)
                      .+..+|-|+|+||+||||+..+|.+.+
T Consensus        52 ~~~~~IgitG~pGaGKSTLi~~l~~~~   78 (327)
T d2p67a1          52 GNTLRLGVTGTPGAGKSTFLEAFGMLL   78 (327)
T ss_dssp             SCSEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred             CCceEEEeeCCCCCCHHHHHHHHHHHH
Confidence            578999999999999999999998754

>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap2a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.59  E-value=0.00063  Score=49.29  Aligned_cols=26  Identities=15%  Similarity=0.064  Sum_probs=22.8

Q ss_pred             CCCeEEEEEcCCCCCchHHHHHHHHH
Q 030464           76 RRGVHWAFIGSPRAKKHVYAEMLSKL  101 (177)
Q Consensus        76 ~~~~~IlIiGpPGSGKSTlA~~LAk~  101 (177)
                      +|..+|+|+|.+|+|||++..++...
T Consensus         1 mk~~Ki~lvG~~~vGKTsLi~r~~~~   26 (167)
T d1kaoa_           1 MREYKVVVLGSGGVGKSALTVQFVTG   26 (167)
T ss_dssp             CCEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred             CceeEEEEECCCCcCHHHHHHHHHhC
Confidence            35679999999999999999999764

>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.58  E-value=0.00067  Score=49.69  Aligned_cols=27  Identities=7%  Similarity=0.032  Sum_probs=23.5

Q ss_pred             cCCCeEEEEEcCCCCCchHHHHHHHHH
Q 030464           75 RRRGVHWAFIGSPRAKKHVYAEMLSKL  101 (177)
Q Consensus        75 ~~~~~~IlIiGpPGSGKSTlA~~LAk~  101 (177)
                      |.+..+|+|+|.+|+|||++..++...
T Consensus         3 ~~~~~Kv~lvG~~~vGKTsLi~r~~~~   29 (173)
T d2fn4a1           3 PSETHKLVVVGGGGVGKSALTIQFIQS   29 (173)
T ss_dssp             SSCEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred             CCCeEEEEEECCCCcCHHHHHHHHHhC
Confidence            456689999999999999999998763

>d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.53  E-value=0.0005  Score=51.55  Aligned_cols=37  Identities=19%  Similarity=0.040  Sum_probs=27.3

Q ss_pred             ccccCccCcc-cCCCeEEEEEcCCCCCchHHHHHHHHH
Q 030464           65 VTLPDTEGRE-RRRGVHWAFIGSPRAKKHVYAEMLSKL  101 (177)
Q Consensus        65 ~~~~~~~~~~-~~~~~~IlIiGpPGSGKSTlA~~LAk~  101 (177)
                      .+.+|.-... ..++-.++|.|+||||||++|..++..
T Consensus        20 i~~LD~ll~GGi~~G~~~li~G~pGsGKT~l~lq~~~~   57 (251)
T d1szpa2          20 SKNLDTLLGGGVETGSITELFGEFRTGKSQLCHTLAVT   57 (251)
T ss_dssp             CHHHHHHHTSSEESSSEEEEEESTTSSHHHHHHHHTTT
T ss_pred             CHHHHhhhCCCCcCCeEEEEEcCCCCCHHHHHHHHHHH
Confidence            3444443332 457888999999999999999988653

>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rac
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.53  E-value=0.00063  Score=50.20  Aligned_cols=26  Identities=8%  Similarity=0.094  Sum_probs=23.2

Q ss_pred             CCCeEEEEEcCCCCCchHHHHHHHHH
Q 030464           76 RRGVHWAFIGSPRAKKHVYAEMLSKL  101 (177)
Q Consensus        76 ~~~~~IlIiGpPGSGKSTlA~~LAk~  101 (177)
                      .+.++|+|+|.+|+|||++..++.+.
T Consensus         3 p~~iKivviG~~~vGKTsli~~~~~~   28 (183)
T d1mh1a_           3 PQAIKCVVVGDGAVGKTCLLISYTTN   28 (183)
T ss_dssp             CEEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             ceeEEEEEECCCCCCHHHHHHHHHhC
Confidence            47789999999999999999998764

>d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=96.49  E-value=0.00083  Score=50.96  Aligned_cols=40  Identities=13%  Similarity=-0.026  Sum_probs=29.5

Q ss_pred             CCccccCccCcc-cCCCeEEEEEcCCCCCchHHHHHHHHHh
Q 030464           63 RSVTLPDTEGRE-RRRGVHWAFIGSPRAKKHVYAEMLSKLL  102 (177)
Q Consensus        63 ~~~~~~~~~~~~-~~~~~~IlIiGpPGSGKSTlA~~LAk~l  102 (177)
                      .-.+.+|.-... ..++-.++|.|+||||||++|-.++...
T Consensus        20 TGi~~LD~ll~GGlp~G~~~li~G~pGsGKT~~~lq~~~~~   60 (254)
T d1pzna2          20 TGSKSLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMV   60 (254)
T ss_dssp             CSCHHHHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred             CCCHHHHHhhcCCccCCEEEEEEcCCCCCHHHHHHHHHHHh
Confidence            344444443332 4578889999999999999999998754

>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-22a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.48  E-value=0.00063  Score=49.38  Aligned_cols=25  Identities=12%  Similarity=0.120  Sum_probs=22.6

Q ss_pred             CCCeEEEEEcCCCCCchHHHHHHHH
Q 030464           76 RRGVHWAFIGSPRAKKHVYAEMLSK  100 (177)
Q Consensus        76 ~~~~~IlIiGpPGSGKSTlA~~LAk  100 (177)
                      +|..+|+|+|.+|+|||++..++..
T Consensus         2 ~k~~Ki~lvG~~~vGKTsli~rl~~   26 (167)
T d1z0ja1           2 LRELKVCLLGDTGVGKSSIMWRFVE   26 (167)
T ss_dssp             EEEEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CceeEEEEECCCCcCHHHHHHHHHh
Confidence            4678999999999999999999976

>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Metallochaperone MeaB
species: Methylobacterium extorquens [TaxId: 408]

Probab=96.45  E-value=0.001  Score=54.87  Aligned_cols=27  Identities=26%  Similarity=0.399  Sum_probs=24.1

Q ss_pred             CCCeEEEEEcCCCCCchHHHHHHHHHh
Q 030464           76 RRGVHWAFIGSPRAKKHVYAEMLSKLL  102 (177)
Q Consensus        76 ~~~~~IlIiGpPGSGKSTlA~~LAk~l  102 (177)
                      .+.++|-|+|+||+||||+..+|.+.+
T Consensus        49 ~~~~~igitG~pGaGKSTli~~l~~~~   75 (323)
T d2qm8a1          49 GRAIRVGITGVPGVGKSTTIDALGSLL   75 (323)
T ss_dssp             CCSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CCceEEeeeCCCCCCHHHHHHHHHHHH
Confidence            577899999999999999999998754

>d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Meiotic recombination protein DMC1/LIM15 homolog
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.44  E-value=0.0011  Score=50.04  Aligned_cols=39  Identities=13%  Similarity=-0.113  Sum_probs=29.3

Q ss_pred             CCccccCccCc-ccCCCeEEEEEcCCCCCchHHHHHHHHH
Q 030464           63 RSVTLPDTEGR-ERRRGVHWAFIGSPRAKKHVYAEMLSKL  101 (177)
Q Consensus        63 ~~~~~~~~~~~-~~~~~~~IlIiGpPGSGKSTlA~~LAk~  101 (177)
                      .-.+.+|.-.. ...++-.++|.|+||+|||++|..++..
T Consensus        21 TGi~~LD~~lgGGip~G~~~~i~G~~GsGKT~lalq~~~~   60 (258)
T d1v5wa_          21 TGSQEFDKLLGGGIESMAITEAFGEFRTGKTQLSHTLCVT   60 (258)
T ss_dssp             CSCHHHHHHTTSSBCSSEEEEEECCTTCTHHHHHHHHHHH
T ss_pred             CCCHHHHHhhcCCCcCCEEEEEECCCCCCHHHHHHHHHHH
Confidence            34444554433 4568888999999999999999999864

>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab27b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.44  E-value=0.00081  Score=49.53  Aligned_cols=23  Identities=9%  Similarity=0.115  Sum_probs=20.8

Q ss_pred             CeEEEEEcCCCCCchHHHHHHHH
Q 030464           78 GVHWAFIGSPRAKKHVYAEMLSK  100 (177)
Q Consensus        78 ~~~IlIiGpPGSGKSTlA~~LAk  100 (177)
                      .++|+|+|.||+|||++..++..
T Consensus         5 ~~Ki~ivG~~~vGKTsLi~~l~~   27 (186)
T d2f7sa1           5 LIKLLALGDSGVGKTTFLYRYTD   27 (186)
T ss_dssp             EEEEEEESCTTSSHHHHHHHHHC
T ss_pred             EEEEEEECCCCcCHHHHHHHHhc
Confidence            47899999999999999999875

>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein ypt7p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.42  E-value=0.00091  Score=48.57  Aligned_cols=22  Identities=9%  Similarity=0.123  Sum_probs=20.1

Q ss_pred             eEEEEEcCCCCCchHHHHHHHH
Q 030464           79 VHWAFIGSPRAKKHVYAEMLSK  100 (177)
Q Consensus        79 ~~IlIiGpPGSGKSTlA~~LAk  100 (177)
                      ++|+|+|.||+|||++..++..
T Consensus         3 ~Ki~~vG~~~vGKSsLi~~~~~   24 (175)
T d1ky3a_           3 LKVIILGDSGVGKTSLMHRYVN   24 (175)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCcCHHHHHHHHHc
Confidence            5899999999999999999865

>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein RheB
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.41  E-value=0.00078  Score=48.75  Aligned_cols=24  Identities=13%  Similarity=0.138  Sum_probs=21.8

Q ss_pred             CCeEEEEEcCCCCCchHHHHHHHH
Q 030464           77 RGVHWAFIGSPRAKKHVYAEMLSK  100 (177)
Q Consensus        77 ~~~~IlIiGpPGSGKSTlA~~LAk  100 (177)
                      |..+|+|+|.+|+|||++..++..
T Consensus         3 k~~Kv~liG~~~vGKTsLl~~~~~   26 (167)
T d1xtqa1           3 KSRKIAILGYRSVGKSSLTIQFVE   26 (167)
T ss_dssp             EEEEEEEEESTTSSHHHHHHHHHH
T ss_pred             cceEEEEECCCCcCHHHHHHHHHh
Confidence            567999999999999999999875

>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL8A [TaxId: 9606]

Probab=96.41  E-value=0.00095  Score=48.24  Aligned_cols=24  Identities=8%  Similarity=0.264  Sum_probs=21.4

Q ss_pred             CeEEEEEcCCCCCchHHHHHHHHH
Q 030464           78 GVHWAFIGSPRAKKHVYAEMLSKL  101 (177)
Q Consensus        78 ~~~IlIiGpPGSGKSTlA~~LAk~  101 (177)
                      -++|+|+|++|+|||++..++...
T Consensus         2 e~ki~i~G~~~~GKTsLl~~l~~~   25 (164)
T d1zd9a1           2 EMELTLVGLQYSGKTTFVNVIASG   25 (164)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             eEEEEEECCCCCCHHHHHHHHHcC
Confidence            478999999999999999999764

>d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=96.39  E-value=0.001  Score=53.71  Aligned_cols=26  Identities=23%  Similarity=0.178  Sum_probs=22.7

Q ss_pred             CCeEEEEEcCCCCCchHHHHHHHHHh
Q 030464           77 RGVHWAFIGSPRAKKHVYAEMLSKLL  102 (177)
Q Consensus        77 ~~~~IlIiGpPGSGKSTlA~~LAk~l  102 (177)
                      ..-+++++|+||+|||++++.||++.
T Consensus        38 ~k~n~lLVG~~GvGKTalv~~la~ri   63 (268)
T d1r6bx2          38 RKNNPLLVGESGVGKTAIAEGLAWRI   63 (268)
T ss_dssp             SSCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             ccCCcEEECCCCCcHHHHHHHHHHHH
Confidence            44579999999999999999999863

>d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III, N-domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: gamma subunit of DNA polymerase III, N-domain
species: Thermotoga maritima [TaxId: 2336]

Probab=96.39  E-value=0.0025  Score=48.66  Aligned_cols=26  Identities=12%  Similarity=0.114  Sum_probs=23.5

Q ss_pred             CCeEEEEEcCCCCCchHHHHHHHHHh
Q 030464           77 RGVHWAFIGSPRAKKHVYAEMLSKLL  102 (177)
Q Consensus        77 ~~~~IlIiGpPGSGKSTlA~~LAk~l  102 (177)
                      .+..++|.|+||+||+++|..+++..
T Consensus        14 ~~~~~l~~G~~g~gk~~~a~~l~~~i   39 (198)
T d2gnoa2          14 EGISILINGEDLSYPREVSLELPEYV   39 (198)
T ss_dssp             SSEEEEEECSSSSHHHHHHHHHHHHH
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHH
Confidence            56789999999999999999999865

>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Bacillus subtilis [TaxId: 1423]

Probab=96.37  E-value=0.00095  Score=49.50  Aligned_cols=22  Identities=18%  Similarity=0.234  Sum_probs=19.9

Q ss_pred             eEEEEEcCCCCCchHHHHHHHH
Q 030464           79 VHWAFIGSPRAKKHVYAEMLSK  100 (177)
Q Consensus        79 ~~IlIiGpPGSGKSTlA~~LAk  100 (177)
                      ++|+|+|.||+||||+...|..
T Consensus        24 ~~I~lvG~~n~GKSTLin~L~g   45 (195)
T d1svia_          24 PEIALAGRSNVGKSSFINSLIN   45 (195)
T ss_dssp             CEEEEEEBTTSSHHHHHHHHHT
T ss_pred             CEEEEECCCCCCHHHHHHHhcC
Confidence            4799999999999999999964

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.35  E-value=0.00098  Score=48.16  Aligned_cols=23  Identities=13%  Similarity=0.105  Sum_probs=20.7

Q ss_pred             eEEEEEcCCCCCchHHHHHHHHH
Q 030464           79 VHWAFIGSPRAKKHVYAEMLSKL  101 (177)
Q Consensus        79 ~~IlIiGpPGSGKSTlA~~LAk~  101 (177)
                      ++|+|+|.||+|||++..++...
T Consensus         3 ~Ki~vvG~~~vGKTSli~~l~~~   25 (166)
T d1g16a_           3 MKILLIGDSGVGKSCLLVRFVED   25 (166)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHC
T ss_pred             EEEEEECCCCcCHHHHHHHHHhC
Confidence            58999999999999999998763

>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF6 [TaxId: 9606]

Probab=96.31  E-value=0.00076  Score=49.21  Aligned_cols=25  Identities=16%  Similarity=0.125  Sum_probs=22.5

Q ss_pred             CCCeEEEEEcCCCCCchHHHHHHHH
Q 030464           76 RRGVHWAFIGSPRAKKHVYAEMLSK  100 (177)
Q Consensus        76 ~~~~~IlIiGpPGSGKSTlA~~LAk  100 (177)
                      .+.++|+|+|.||+|||++..++..
T Consensus        10 ~k~~kIvlvG~~~vGKTSli~rl~~   34 (173)
T d1e0sa_          10 NKEMRILMLGLDAAGKTTILYKLKL   34 (173)
T ss_dssp             TCCEEEEEEEETTSSHHHHHHHTTC
T ss_pred             CCeEEEEEECCCCCCHHHHHHHHhc
Confidence            4678999999999999999999864

>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.30  E-value=0.0012  Score=48.02  Aligned_cols=25  Identities=8%  Similarity=0.061  Sum_probs=21.9

Q ss_pred             CCeEEEEEcCCCCCchHHHHHHHHH
Q 030464           77 RGVHWAFIGSPRAKKHVYAEMLSKL  101 (177)
Q Consensus        77 ~~~~IlIiGpPGSGKSTlA~~LAk~  101 (177)
                      +..+|+|+|.||+|||++..++...
T Consensus         4 ~~~Ki~lvG~~~vGKTsLi~r~~~~   28 (171)
T d2erya1           4 EKYRLVVVGGGGVGKSALTIQFIQS   28 (171)
T ss_dssp             CEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred             cceEEEEECCCCCCHHHHHHHHHhC
Confidence            4578999999999999999998763

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.30  E-value=0.0012  Score=48.04  Aligned_cols=24  Identities=13%  Similarity=0.054  Sum_probs=21.2

Q ss_pred             CeEEEEEcCCCCCchHHHHHHHHH
Q 030464           78 GVHWAFIGSPRAKKHVYAEMLSKL  101 (177)
Q Consensus        78 ~~~IlIiGpPGSGKSTlA~~LAk~  101 (177)
                      ..+|+|+|.+|+|||++..++...
T Consensus         5 ~~Ki~vvG~~~vGKTsLi~~l~~~   28 (169)
T d3raba_           5 MFKILIIGNSSVGKTSFLFRYADD   28 (169)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEEEECCCCcCHHHHHHHHHcC
Confidence            367999999999999999998763

>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]

Probab=96.30  E-value=0.00079  Score=49.41  Aligned_cols=26  Identities=15%  Similarity=0.105  Sum_probs=22.8

Q ss_pred             cCCCeEEEEEcCCCCCchHHHHHHHH
Q 030464           75 RRRGVHWAFIGSPRAKKHVYAEMLSK  100 (177)
Q Consensus        75 ~~~~~~IlIiGpPGSGKSTlA~~LAk  100 (177)
                      ..+.++|+|+|.||+||||+..++..
T Consensus        14 ~~k~~KI~lvG~~~vGKTsLi~~l~~   39 (182)
T d1moza_          14 SNKELRILILGLDGAGKTTILYRLQI   39 (182)
T ss_dssp             CSSCEEEEEEEETTSSHHHHHHHTCC
T ss_pred             CCceEEEEEECCCCCCHHHHHHHHhc
Confidence            35789999999999999999998843

>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=96.29  E-value=0.0014  Score=47.82  Aligned_cols=26  Identities=15%  Similarity=0.273  Sum_probs=22.7

Q ss_pred             CCCeEEEEEcCCCCCchHHHHHHHHH
Q 030464           76 RRGVHWAFIGSPRAKKHVYAEMLSKL  101 (177)
Q Consensus        76 ~~~~~IlIiGpPGSGKSTlA~~LAk~  101 (177)
                      ...++|+|+|.|++||||+..+|...
T Consensus         6 ~~~~kV~iiG~~~~GKSTLin~l~~~   31 (186)
T d1mkya2           6 TDAIKVAIVGRPNVGKSTLFNAILNK   31 (186)
T ss_dssp             CSCEEEEEECSTTSSHHHHHHHHHTS
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHCC
Confidence            35689999999999999999998753

>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab2b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.29  E-value=0.0012  Score=48.19  Aligned_cols=23  Identities=13%  Similarity=0.206  Sum_probs=20.5

Q ss_pred             eEEEEEcCCCCCchHHHHHHHHH
Q 030464           79 VHWAFIGSPRAKKHVYAEMLSKL  101 (177)
Q Consensus        79 ~~IlIiGpPGSGKSTlA~~LAk~  101 (177)
                      .+|+|+|.||+|||++..++...
T Consensus         4 ~KivvvG~~~vGKTsli~r~~~~   26 (173)
T d2a5ja1           4 FKYIIIGDTGVGKSCLLLQFTDK   26 (173)
T ss_dssp             EEEEEESSTTSSHHHHHHHHHHS
T ss_pred             EEEEEECCCCcCHHHHHHHHhcC
Confidence            58999999999999999998653

>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: CDC42
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.28  E-value=0.00099  Score=49.50  Aligned_cols=25  Identities=8%  Similarity=0.089  Sum_probs=22.1

Q ss_pred             CCeEEEEEcCCCCCchHHHHHHHHH
Q 030464           77 RGVHWAFIGSPRAKKHVYAEMLSKL  101 (177)
Q Consensus        77 ~~~~IlIiGpPGSGKSTlA~~LAk~  101 (177)
                      +.++|+|+|.+|+|||++..++.+.
T Consensus         2 ~~iKvvllG~~~vGKTSli~r~~~~   26 (191)
T d2ngra_           2 QTIKCVVVGDGAVGKTCLLISYTTN   26 (191)
T ss_dssp             EEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred             CceEEEEECCCCcCHHHHHHHHHhC
Confidence            4689999999999999999988764

>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-33b
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.27  E-value=0.0012  Score=47.40  Aligned_cols=25  Identities=16%  Similarity=0.077  Sum_probs=21.6

Q ss_pred             CCeEEEEEcCCCCCchHHHHHHHHH
Q 030464           77 RGVHWAFIGSPRAKKHVYAEMLSKL  101 (177)
Q Consensus        77 ~~~~IlIiGpPGSGKSTlA~~LAk~  101 (177)
                      |..+|+|+|.+|+|||++..++...
T Consensus         1 r~~Kv~liG~~~vGKTsLl~~~~~~   25 (165)
T d1z06a1           1 RIFKIIVIGDSNVGKTCLTYRFCAG   25 (165)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred             CEEEEEEECCCCcCHHHHHHHHHhC
Confidence            3468999999999999999999763

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.25  E-value=0.0012  Score=47.97  Aligned_cols=24  Identities=13%  Similarity=0.123  Sum_probs=21.4

Q ss_pred             CeEEEEEcCCCCCchHHHHHHHHH
Q 030464           78 GVHWAFIGSPRAKKHVYAEMLSKL  101 (177)
Q Consensus        78 ~~~IlIiGpPGSGKSTlA~~LAk~  101 (177)
                      ..+|+|+|.+|+|||++.+++.+.
T Consensus         5 ~~Ki~lvG~~~vGKTsLi~~l~~~   28 (171)
T d2ew1a1           5 LFKIVLIGNAGVGKTCLVRRFTQG   28 (171)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhC
Confidence            368999999999999999999863

>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-like estrogen-regulated growth inhibitor, RERG
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.24  E-value=0.0013  Score=47.82  Aligned_cols=23  Identities=17%  Similarity=0.146  Sum_probs=21.1

Q ss_pred             eEEEEEcCCCCCchHHHHHHHHH
Q 030464           79 VHWAFIGSPRAKKHVYAEMLSKL  101 (177)
Q Consensus        79 ~~IlIiGpPGSGKSTlA~~LAk~  101 (177)
                      ++|+|+|.+|+|||++..++...
T Consensus         3 iKi~lvG~~~vGKTsli~r~~~~   25 (168)
T d2atva1           3 VKLAIFGRAGVGKSALVVRFLTK   25 (168)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEEECCCCCCHHHHHHHHHhC
Confidence            68999999999999999999864

>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap1A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.23  E-value=0.0014  Score=47.49  Aligned_cols=25  Identities=16%  Similarity=0.133  Sum_probs=22.3

Q ss_pred             CCeEEEEEcCCCCCchHHHHHHHHH
Q 030464           77 RGVHWAFIGSPRAKKHVYAEMLSKL  101 (177)
Q Consensus        77 ~~~~IlIiGpPGSGKSTlA~~LAk~  101 (177)
                      |..+|+|+|.+|+|||++..++...
T Consensus         2 r~~KivvvG~~~vGKTsli~r~~~~   26 (167)
T d1c1ya_           2 REYKLVVLGSGGVGKSALTVQFVQG   26 (167)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHC
T ss_pred             ceeEEEEECCCCCCHHHHHHHHHcC
Confidence            5678999999999999999998764

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.22  E-value=0.0014  Score=47.96  Aligned_cols=22  Identities=14%  Similarity=0.214  Sum_probs=20.2

Q ss_pred             eEEEEEcCCCCCchHHHHHHHH
Q 030464           79 VHWAFIGSPRAKKHVYAEMLSK  100 (177)
Q Consensus        79 ~~IlIiGpPGSGKSTlA~~LAk  100 (177)
                      .+|+|+|.||+|||++..++..
T Consensus         5 ~Ki~vvG~~~vGKTsLi~~~~~   26 (175)
T d2f9la1           5 FKVVLIGDSGVGKSNLLSRFTR   26 (175)
T ss_dssp             EEEEEESSTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCcCHHHHHHHHHh
Confidence            5899999999999999999865

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.22  E-value=0.0013  Score=47.89  Aligned_cols=24  Identities=13%  Similarity=0.120  Sum_probs=21.3

Q ss_pred             CCeEEEEEcCCCCCchHHHHHHHH
Q 030464           77 RGVHWAFIGSPRAKKHVYAEMLSK  100 (177)
Q Consensus        77 ~~~~IlIiGpPGSGKSTlA~~LAk  100 (177)
                      ...+|+|+|.||+|||++..++..
T Consensus         4 ~~~KI~lvG~~~vGKTsll~~~~~   27 (174)
T d2bmea1           4 FLFKFLVIGNAGTGKSCLLHQFIE   27 (174)
T ss_dssp             EEEEEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEEEEECCCCcCHHHHHHHHHh
Confidence            347899999999999999999875

>d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CED-4, NB-ARC domain
species: Caenorhabditis elegans [TaxId: 6239]

Probab=96.22  E-value=0.0068  Score=47.97  Aligned_cols=24  Identities=17%  Similarity=0.070  Sum_probs=21.0

Q ss_pred             CeEEEEEcCCCCCchHHHHHHHHH
Q 030464           78 GVHWAFIGSPRAKKHVYAEMLSKL  101 (177)
Q Consensus        78 ~~~IlIiGpPGSGKSTlA~~LAk~  101 (177)
                      ...|.|.|+.|+||||+|+.+.+.
T Consensus        44 ~~~v~I~GmgGiGKTtLA~~v~~~   67 (277)
T d2a5yb3          44 SFFLFLHGRAGSGKSVIASQALSK   67 (277)
T ss_dssp             SEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHh
Confidence            456889999999999999998765

>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab7
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.21  E-value=0.0014  Score=48.24  Aligned_cols=22  Identities=9%  Similarity=0.141  Sum_probs=20.3

Q ss_pred             eEEEEEcCCCCCchHHHHHHHH
Q 030464           79 VHWAFIGSPRAKKHVYAEMLSK  100 (177)
Q Consensus        79 ~~IlIiGpPGSGKSTlA~~LAk  100 (177)
                      ++|+|+|.||||||++..++..
T Consensus         3 ~Kv~vvG~~~vGKSSLi~~l~~   24 (184)
T d1vg8a_           3 LKVIILGDSGVGKTSLMNQYVN   24 (184)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCcCHHHHHHHHHh
Confidence            5899999999999999999875

>d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Lactobacillus casei [TaxId: 1582]

Probab=96.19  E-value=0.0017  Score=49.35  Aligned_cols=34  Identities=18%  Similarity=0.009  Sum_probs=28.4

Q ss_pred             CCCeEEEEEcCCCCCchHHHHHHHHHhCCCeeeCc
Q 030464           76 RRGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMS  110 (177)
Q Consensus        76 ~~~~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~  110 (177)
                      ..+.-|+|.|++|+||||+|..|.++ |...++-+
T Consensus        12 ~~g~gvl~~G~sG~GKStlal~l~~~-g~~lv~DD   45 (176)
T d1kkma_          12 IYGLGVLITGDSGVGKSETALELVQR-GHRLIADD   45 (176)
T ss_dssp             ETTEEEEEECCTTSCHHHHHHHHHHT-TCEEEEEE
T ss_pred             ECCEEEEEEeCCCCCHHHHHHHHHHc-CCeEEecC
Confidence            35677999999999999999998875 88877744

>d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=96.17  E-value=0.0014  Score=48.83  Aligned_cols=37  Identities=14%  Similarity=-0.099  Sum_probs=28.1

Q ss_pred             cccCccCc-ccCCCeEEEEEcCCCCCchHHHHHHHHHh
Q 030464           66 TLPDTEGR-ERRRGVHWAFIGSPRAKKHVYAEMLSKLL  102 (177)
Q Consensus        66 ~~~~~~~~-~~~~~~~IlIiGpPGSGKSTlA~~LAk~l  102 (177)
                      +.+|.-.. ...++-.++|.|+||+|||++|..+|-..
T Consensus        21 ~~LD~ll~GGl~~G~l~~i~G~~G~GKT~~~l~~a~~~   58 (258)
T d2i1qa2          21 SELDSVLGGGLESQSVTEFAGVFGSGKTQIMHQSCVNL   58 (258)
T ss_dssp             HHHHHHTTSSEETTEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred             HHHHHhcCCCccCCeEEEEEeCCCCCHHHHHHHHHHHH
Confidence            34444332 35678889999999999999999998754

>d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: YjeE-like
domain: Hypothetical protein HI0065
species: Haemophilus influenzae [TaxId: 727]

Probab=96.17  E-value=0.0022  Score=48.03  Aligned_cols=30  Identities=10%  Similarity=0.035  Sum_probs=26.8

Q ss_pred             CCCeEEEEEcCCCCCchHHHHHHHHHhCCC
Q 030464           76 RRGVHWAFIGSPRAKKHVYAEMLSKLLEVP  105 (177)
Q Consensus        76 ~~~~~IlIiGpPGSGKSTlA~~LAk~lgl~  105 (177)
                      .++..|++.|+=|+||||+++.+++.+|+.
T Consensus        31 ~~g~ii~L~G~LGaGKTtfvr~~~~~lg~~   60 (158)
T d1htwa_          31 EKAIMVYLNGDLGAGKTTLTRGMLQGIGHQ   60 (158)
T ss_dssp             SSCEEEEEECSTTSSHHHHHHHHHHHTTCC
T ss_pred             CCCeEEEEecCCCccHHHHHHHHHhhcccc
Confidence            356788999999999999999999999885

>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.16  E-value=0.0014  Score=48.48  Aligned_cols=24  Identities=13%  Similarity=0.095  Sum_probs=21.3

Q ss_pred             CeEEEEEcCCCCCchHHHHHHHHH
Q 030464           78 GVHWAFIGSPRAKKHVYAEMLSKL  101 (177)
Q Consensus        78 ~~~IlIiGpPGSGKSTlA~~LAk~  101 (177)
                      .++|+|+|+|++||||+..+|...
T Consensus         3 ~p~V~lvG~~n~GKTSLln~l~~~   26 (209)
T d1nrjb_           3 QPSIIIAGPQNSGKTSLLTLLTTD   26 (209)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHS
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCC
Confidence            358999999999999999999764

>d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4 [TaxId: 10331]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Equine herpesvirus type 4 [TaxId: 10331]

Probab=96.14  E-value=0.00099  Score=55.34  Aligned_cols=29  Identities=10%  Similarity=-0.057  Sum_probs=25.7

Q ss_pred             cCCCeEEEEEcCCCCCchHHHHHHHHHhC
Q 030464           75 RRRGVHWAFIGSPRAKKHVYAEMLSKLLE  103 (177)
Q Consensus        75 ~~~~~~IlIiGpPGSGKSTlA~~LAk~lg  103 (177)
                      +...++|+|-|+-||||||+++.|++.++
T Consensus         3 ~~~~~rI~iEG~iGsGKSTl~~~L~~~l~   31 (333)
T d1p6xa_           3 MVTIVRIYLDGVYGIGKSTTGRVMASAAS   31 (333)
T ss_dssp             EEEEEEEEEECSTTSSHHHHHHHHHSGGG
T ss_pred             CCceEEEEEECCccCCHHHHHHHHHHHhc
Confidence            34668999999999999999999999874

>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.13  E-value=0.0015  Score=47.92  Aligned_cols=23  Identities=17%  Similarity=0.325  Sum_probs=20.9

Q ss_pred             CCeEEEEEcCCCCCchHHHHHHH
Q 030464           77 RGVHWAFIGSPRAKKHVYAEMLS   99 (177)
Q Consensus        77 ~~~~IlIiGpPGSGKSTlA~~LA   99 (177)
                      |.++|+|+|.+|||||++..++.
T Consensus         1 r~iKivllG~~~vGKTsll~r~~   23 (200)
T d1zcba2           1 RLVKILLLGAGESGKSTFLKQMR   23 (200)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHH
T ss_pred             CeEEEEEECCCCCCHHHHHHHHh
Confidence            46899999999999999999993

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.12  E-value=0.0017  Score=46.96  Aligned_cols=23  Identities=13%  Similarity=0.226  Sum_probs=20.7

Q ss_pred             eEEEEEcCCCCCchHHHHHHHHH
Q 030464           79 VHWAFIGSPRAKKHVYAEMLSKL  101 (177)
Q Consensus        79 ~~IlIiGpPGSGKSTlA~~LAk~  101 (177)
                      .+|+|+|.||+|||++..++...
T Consensus         5 ~KivlvG~~~vGKTsli~~~~~~   27 (166)
T d1z0fa1           5 FKYIIIGDMGVGKSCLLHQFTEK   27 (166)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEEECCCCcCHHHHHHHHHhC
Confidence            68999999999999999998753

>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter MsbA, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=96.11  E-value=0.00085  Score=53.55  Aligned_cols=37  Identities=14%  Similarity=0.196  Sum_probs=29.9

Q ss_pred             cccCccCcccCCCeEEEEEcCCCCCchHHHHHHHHHh
Q 030464           66 TLPDTEGRERRRGVHWAFIGSPRAKKHVYAEMLSKLL  102 (177)
Q Consensus        66 ~~~~~~~~~~~~~~~IlIiGpPGSGKSTlA~~LAk~l  102 (177)
                      +.++.-.....++-.+.|+|+.||||||+++.|+.-+
T Consensus        29 ~~L~~isl~i~~Ge~iaivG~sGsGKSTLl~ll~gl~   65 (253)
T d3b60a1          29 PALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFY   65 (253)
T ss_dssp             CSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTT
T ss_pred             ceeeceEEEEcCCCEEEEECCCCChHHHHHHHHhccc
Confidence            3455555666788899999999999999999987654

>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: cH-p21 Ras protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.06  E-value=0.0015  Score=47.14  Aligned_cols=24  Identities=13%  Similarity=0.087  Sum_probs=21.2

Q ss_pred             CeEEEEEcCCCCCchHHHHHHHHH
Q 030464           78 GVHWAFIGSPRAKKHVYAEMLSKL  101 (177)
Q Consensus        78 ~~~IlIiGpPGSGKSTlA~~LAk~  101 (177)
                      ..+|+|+|.+|+|||++..++...
T Consensus         3 e~Ki~viG~~~vGKTsli~~l~~~   26 (166)
T d1ctqa_           3 EYKLVVVGAGGVGKSALTIQLIQN   26 (166)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHC
T ss_pred             eeEEEEECCCCCCHHHHHHHHHhC
Confidence            468999999999999999998763

>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ypt51
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.06  E-value=0.0018  Score=46.81  Aligned_cols=24  Identities=8%  Similarity=0.124  Sum_probs=21.3

Q ss_pred             CeEEEEEcCCCCCchHHHHHHHHH
Q 030464           78 GVHWAFIGSPRAKKHVYAEMLSKL  101 (177)
Q Consensus        78 ~~~IlIiGpPGSGKSTlA~~LAk~  101 (177)
                      .++|+|+|.+|+|||++..++...
T Consensus         3 ~iKi~vvG~~~vGKTsLi~~~~~~   26 (170)
T d1ek0a_           3 SIKLVLLGEAAVGKSSIVLRFVSN   26 (170)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhC
Confidence            478999999999999999998764

>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=96.05  E-value=0.0016  Score=47.15  Aligned_cols=21  Identities=24%  Similarity=0.314  Sum_probs=19.3

Q ss_pred             EEEEEcCCCCCchHHHHHHHH
Q 030464           80 HWAFIGSPRAKKHVYAEMLSK  100 (177)
Q Consensus        80 ~IlIiGpPGSGKSTlA~~LAk  100 (177)
                      .|+|+|.|++||||+..+|..
T Consensus         2 ~V~liG~~n~GKSsLi~~L~~   22 (171)
T d1mkya1           2 TVLIVGRPNVGKSTLFNKLVK   22 (171)
T ss_dssp             EEEEECCTTSSHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHhC
Confidence            589999999999999999964

>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Escherichia coli [TaxId: 562]

Probab=96.00  E-value=0.001  Score=47.91  Aligned_cols=25  Identities=28%  Similarity=0.391  Sum_probs=22.0

Q ss_pred             CCCeEEEEEcCCCCCchHHHHHHHH
Q 030464           76 RRGVHWAFIGSPRAKKHVYAEMLSK  100 (177)
Q Consensus        76 ~~~~~IlIiGpPGSGKSTlA~~LAk  100 (177)
                      ...++|+|+|.|++||||+..+|..
T Consensus        14 ~~~~~I~lvG~~NvGKSSL~n~L~~   38 (188)
T d1puia_          14 DTGIEVAFAGRSNAGKSSALNTLTN   38 (188)
T ss_dssp             SCSEEEEEEECTTSSHHHHHTTTCC
T ss_pred             ccCCEEEEECCCCCCHHHHHHHHhC
Confidence            3678999999999999999998844

>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab21
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.00  E-value=0.0019  Score=46.64  Aligned_cols=23  Identities=9%  Similarity=0.063  Sum_probs=20.8

Q ss_pred             CeEEEEEcCCCCCchHHHHHHHH
Q 030464           78 GVHWAFIGSPRAKKHVYAEMLSK  100 (177)
Q Consensus        78 ~~~IlIiGpPGSGKSTlA~~LAk  100 (177)
                      ..+|+|+|.+|+|||++..++..
T Consensus         3 ~fKivlvG~~~vGKTsLi~r~~~   25 (167)
T d1z08a1           3 SFKVVLLGEGCVGKTSLVLRYCE   25 (167)
T ss_dssp             EEEEEEECCTTSCHHHHHHHHHH
T ss_pred             eEEEEEECCCCcCHHHHHHHHHh
Confidence            45899999999999999999876

>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: TrmE GTPase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=95.99  E-value=0.00073  Score=48.18  Aligned_cols=23  Identities=17%  Similarity=0.293  Sum_probs=21.0

Q ss_pred             eEEEEEcCCCCCchHHHHHHHHH
Q 030464           79 VHWAFIGSPRAKKHVYAEMLSKL  101 (177)
Q Consensus        79 ~~IlIiGpPGSGKSTlA~~LAk~  101 (177)
                      ++|+|+|.|++||||+..+|...
T Consensus         1 ikI~liG~~n~GKSSLin~l~g~   23 (160)
T d1xzpa2           1 LRMVIVGKPNVGKSTLLNRLLNE   23 (160)
T ss_dssp             EEEEEECCHHHHTCHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhCC
Confidence            58999999999999999999764

>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab9a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.98  E-value=0.0019  Score=46.95  Aligned_cols=22  Identities=9%  Similarity=0.081  Sum_probs=19.9

Q ss_pred             eEEEEEcCCCCCchHHHHHHHH
Q 030464           79 VHWAFIGSPRAKKHVYAEMLSK  100 (177)
Q Consensus        79 ~~IlIiGpPGSGKSTlA~~LAk  100 (177)
                      .+|+|+|.||+|||++..++..
T Consensus         7 ~KI~vvG~~~vGKSSli~~~~~   28 (174)
T d1wmsa_           7 FKVILLGDGGVGKSSLMNRYVT   28 (174)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHh
Confidence            3799999999999999998865

>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Haemolysin B ATP-binding protein
species: Escherichia coli [TaxId: 562]

Probab=95.97  E-value=0.0011  Score=52.69  Aligned_cols=36  Identities=11%  Similarity=0.278  Sum_probs=29.5

Q ss_pred             ccCccCcccCCCeEEEEEcCCCCCchHHHHHHHHHh
Q 030464           67 LPDTEGRERRRGVHWAFIGSPRAKKHVYAEMLSKLL  102 (177)
Q Consensus        67 ~~~~~~~~~~~~~~IlIiGpPGSGKSTlA~~LAk~l  102 (177)
                      .++.-.....++-.|.|+|+.||||||+++.|...+
T Consensus        18 vL~~isl~i~~Ge~vaIvG~sGsGKSTLl~ll~gl~   53 (241)
T d2pmka1          18 ILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFY   53 (241)
T ss_dssp             EEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             eEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhcC
Confidence            345555566788999999999999999999987655

>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.96  E-value=0.0019  Score=48.16  Aligned_cols=22  Identities=18%  Similarity=0.048  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCCchHHHHHHHHH
Q 030464           80 HWAFIGSPRAKKHVYAEMLSKL  101 (177)
Q Consensus        80 ~IlIiGpPGSGKSTlA~~LAk~  101 (177)
                      .|+|+|+|++||||+..+|...
T Consensus         2 ~V~ivG~~~~GKTsLl~~l~~~   23 (207)
T d2fh5b1           2 AVLFVGLCDSGKTLLFVRLLTG   23 (207)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            6999999999999999999763

>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter LmrA, C-terminal domain
species: Lactococcus lactis [TaxId: 1358]

Probab=95.96  E-value=0.0013  Score=52.21  Aligned_cols=36  Identities=17%  Similarity=0.187  Sum_probs=29.2

Q ss_pred             ccCccCcccCCCeEEEEEcCCCCCchHHHHHHHHHh
Q 030464           67 LPDTEGRERRRGVHWAFIGSPRAKKHVYAEMLSKLL  102 (177)
Q Consensus        67 ~~~~~~~~~~~~~~IlIiGpPGSGKSTlA~~LAk~l  102 (177)
                      .++.-.....++-.+.|+|+.||||||+.+.|+.-+
T Consensus        17 vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~   52 (242)
T d1mv5a_          17 ILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFY   52 (242)
T ss_dssp             SEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHHhh
Confidence            345555566788899999999999999999987654

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.96  E-value=0.0022  Score=46.90  Aligned_cols=23  Identities=13%  Similarity=0.130  Sum_probs=21.0

Q ss_pred             CeEEEEEcCCCCCchHHHHHHHH
Q 030464           78 GVHWAFIGSPRAKKHVYAEMLSK  100 (177)
Q Consensus        78 ~~~IlIiGpPGSGKSTlA~~LAk  100 (177)
                      .++|+|+|.+|+|||++..++..
T Consensus         7 ~iKi~vvG~~~vGKTsli~~l~~   29 (177)
T d1x3sa1           7 TLKILIIGESGVGKSSLLLRFTD   29 (177)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHH
T ss_pred             eeEEEEECCCCcCHHHHHHHHHh
Confidence            47899999999999999999875

>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: di-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.94  E-value=0.0018  Score=46.76  Aligned_cols=22  Identities=18%  Similarity=0.098  Sum_probs=20.0

Q ss_pred             eEEEEEcCCCCCchHHHHHHHH
Q 030464           79 VHWAFIGSPRAKKHVYAEMLSK  100 (177)
Q Consensus        79 ~~IlIiGpPGSGKSTlA~~LAk  100 (177)
                      .+|+|+|.+|+|||++..++..
T Consensus         3 ~Ki~viG~~~vGKTsLi~r~~~   24 (171)
T d2erxa1           3 YRVAVFGAGGVGKSSLVLRFVK   24 (171)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHT
T ss_pred             eEEEEECCCCCCHHHHHHHHHh
Confidence            4799999999999999998875

>d1osna_ c.37.1.1 (A:) Thymidine kinase {Varicella-zoster virus [TaxId: 10335]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Varicella-zoster virus [TaxId: 10335]

Probab=95.92  E-value=0.0016  Score=53.90  Aligned_cols=29  Identities=14%  Similarity=0.031  Sum_probs=25.4

Q ss_pred             CCeEEEEEcCCCCCchHHHHHHHHHhCCC
Q 030464           77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVP  105 (177)
Q Consensus        77 ~~~~IlIiGpPGSGKSTlA~~LAk~lgl~  105 (177)
                      +.++|+|-|+-|+||||+++.|++.++..
T Consensus         4 ~~lrI~IEG~iGsGKSTl~~~L~~~l~~~   32 (331)
T d1osna_           4 GVLRIYLDGAYGIGKTTAAEEFLHHFAIT   32 (331)
T ss_dssp             EEEEEEEEESSSSCTTHHHHHHHHTTTTS
T ss_pred             cceEEEEECCCCCCHHHHHHHHHHHHhhc
Confidence            45789999999999999999999987643

>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab5a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.91  E-value=0.0022  Score=46.44  Aligned_cols=23  Identities=13%  Similarity=0.117  Sum_probs=20.5

Q ss_pred             eEEEEEcCCCCCchHHHHHHHHH
Q 030464           79 VHWAFIGSPRAKKHVYAEMLSKL  101 (177)
Q Consensus        79 ~~IlIiGpPGSGKSTlA~~LAk~  101 (177)
                      .+|+|+|.+|+|||++..++...
T Consensus         7 ~Ki~vvG~~~vGKTsLi~~l~~~   29 (170)
T d1r2qa_           7 FKLVLLGESAVGKSSLVLRFVKG   29 (170)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEEECCCCcCHHHHHHHHHhC
Confidence            47999999999999999999753

>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Ytp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.90  E-value=0.0021  Score=47.78  Aligned_cols=25  Identities=16%  Similarity=0.036  Sum_probs=21.6

Q ss_pred             CCeEEEEEcCCCCCchHHHHHHHHH
Q 030464           77 RGVHWAFIGSPRAKKHVYAEMLSKL  101 (177)
Q Consensus        77 ~~~~IlIiGpPGSGKSTlA~~LAk~  101 (177)
                      .-.+|+|+|.+||||||+..++...
T Consensus         5 ~~~KivvvG~~~vGKTsli~~l~~~   29 (194)
T d2bcgy1           5 YLFKLLLIGNSGVGKSCLLLRFSDD   29 (194)
T ss_dssp             EEEEEEEEESTTSSHHHHHHHHHHC
T ss_pred             EEEEEEEECCCCcCHHHHHHHHhhC
Confidence            3468999999999999999998753

>d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Staphylococcus xylosus [TaxId: 1288]

Probab=95.88  E-value=0.003  Score=47.59  Aligned_cols=35  Identities=20%  Similarity=0.028  Sum_probs=28.9

Q ss_pred             CCCeEEEEEcCCCCCchHHHHHHHHHhCCCeeeCch
Q 030464           76 RRGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSS  111 (177)
Q Consensus        76 ~~~~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~d  111 (177)
                      ..+.-|+|.|++|+||||+|-.|.++ |...++-+-
T Consensus        13 ~~g~gvli~G~sg~GKS~la~~l~~~-g~~li~DD~   47 (169)
T d1ko7a2          13 VYGVGVLITGDSGIGKSETALELIKR-GHRLVADDN   47 (169)
T ss_dssp             ETTEEEEEEESTTSSHHHHHHHHHHT-TCEEEESSE
T ss_pred             ECCEEEEEEeCCCCCHHHHHHHHHHc-CCeEEeCCe
Confidence            35677999999999999999888776 888777443

>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoA
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.86  E-value=0.0023  Score=46.63  Aligned_cols=23  Identities=17%  Similarity=0.085  Sum_probs=20.7

Q ss_pred             eEEEEEcCCCCCchHHHHHHHHH
Q 030464           79 VHWAFIGSPRAKKHVYAEMLSKL  101 (177)
Q Consensus        79 ~~IlIiGpPGSGKSTlA~~LAk~  101 (177)
                      .+|+|+|.+|+|||++..++...
T Consensus         3 ~KivvvG~~~vGKTsLi~~~~~~   25 (177)
T d1kmqa_           3 KKLVIVGDGACGKTCLLIVNSKD   25 (177)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEEECCCCcCHHHHHHHHHhC
Confidence            57899999999999999998764

>d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Mycoplasma pneumoniae [TaxId: 2104]

Probab=95.83  E-value=0.0025  Score=48.49  Aligned_cols=33  Identities=18%  Similarity=-0.004  Sum_probs=27.7

Q ss_pred             CCeEEEEEcCCCCCchHHHHHHHHHhCCCeeeCc
Q 030464           77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMS  110 (177)
Q Consensus        77 ~~~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~  110 (177)
                      .+.-|+|.|++|+||||+|-.|.++ |...++-|
T Consensus        14 ~g~gvli~G~sG~GKS~lal~l~~~-G~~lvaDD   46 (177)
T d1knxa2          14 FGVGVLLTGRSGIGKSECALDLINK-NHLFVGDD   46 (177)
T ss_dssp             TTEEEEEEESSSSSHHHHHHHHHTT-TCEEEEEE
T ss_pred             CCEEEEEEcCCCCCHHHHHHHHHHc-CCceecCC
Confidence            5677999999999999999998765 88877744

>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Peptide transporter Tap1, C-terminal ABC domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.82  E-value=0.0017  Score=51.64  Aligned_cols=36  Identities=22%  Similarity=0.202  Sum_probs=29.4

Q ss_pred             ccCccCcccCCCeEEEEEcCCCCCchHHHHHHHHHh
Q 030464           67 LPDTEGRERRRGVHWAFIGSPRAKKHVYAEMLSKLL  102 (177)
Q Consensus        67 ~~~~~~~~~~~~~~IlIiGpPGSGKSTlA~~LAk~l  102 (177)
                      .++.-.....++-.+.|+|+.||||||+++.|...+
T Consensus        29 vL~~isl~i~~Ge~vaivG~sGsGKSTLl~li~gl~   64 (251)
T d1jj7a_          29 VLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLY   64 (251)
T ss_dssp             SEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             eEeceEEEEcCCCEEEEECCCCCcHHHHHHHHhccc
Confidence            355555666788899999999999999999987654

>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.82  E-value=0.0024  Score=45.82  Aligned_cols=21  Identities=14%  Similarity=0.208  Sum_probs=19.5

Q ss_pred             EEEEEcCCCCCchHHHHHHHH
Q 030464           80 HWAFIGSPRAKKHVYAEMLSK  100 (177)
Q Consensus        80 ~IlIiGpPGSGKSTlA~~LAk  100 (177)
                      +|+|+|.+|+|||++..++..
T Consensus         2 Kv~vvG~~~vGKTsLi~r~~~   22 (164)
T d1yzqa1           2 KLVFLGEQSVGKTSLITRFMY   22 (164)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            699999999999999999875

>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=95.80  E-value=0.0017  Score=51.32  Aligned_cols=35  Identities=17%  Similarity=0.251  Sum_probs=27.2

Q ss_pred             cCccCcccCCCeEEEEEcCCCCCchHHHHHHHHHh
Q 030464           68 PDTEGRERRRGVHWAFIGSPRAKKHVYAEMLSKLL  102 (177)
Q Consensus        68 ~~~~~~~~~~~~~IlIiGpPGSGKSTlA~~LAk~l  102 (177)
                      ++.-+....++-.+.|+||.||||||+.+.|+--.
T Consensus        16 l~~isl~i~~Gei~~liGpsGsGKSTLl~~i~Gl~   50 (232)
T d2awna2          16 SKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLE   50 (232)
T ss_dssp             EEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCC
Confidence            34444455678889999999999999999886543

>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein RalA
species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]

Probab=95.78  E-value=0.0028  Score=46.01  Aligned_cols=22  Identities=14%  Similarity=0.055  Sum_probs=20.2

Q ss_pred             eEEEEEcCCCCCchHHHHHHHH
Q 030464           79 VHWAFIGSPRAKKHVYAEMLSK  100 (177)
Q Consensus        79 ~~IlIiGpPGSGKSTlA~~LAk  100 (177)
                      .+|+|+|.+|+|||++..++..
T Consensus         5 ~KivlvG~~~vGKTsli~~~~~   26 (168)
T d1u8za_           5 HKVIMVGSGGVGKSALTLQFMY   26 (168)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCcCHHHHHHHHHh
Confidence            5899999999999999999865

>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rad
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.78  E-value=0.0023  Score=46.40  Aligned_cols=22  Identities=18%  Similarity=0.401  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCCchHHHHHHHHH
Q 030464           80 HWAFIGSPRAKKHVYAEMLSKL  101 (177)
Q Consensus        80 ~IlIiGpPGSGKSTlA~~LAk~  101 (177)
                      +|+|+|.+|+|||++..++...
T Consensus         3 Ki~lvG~~~vGKTsLi~~~~~~   24 (168)
T d2gjsa1           3 KVLLLGAPGVGKSALARIFGGV   24 (168)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTC
T ss_pred             EEEEECCCCcCHHHHHHHHhCC
Confidence            6899999999999999998653

>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab26
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.74  E-value=0.0028  Score=45.83  Aligned_cols=25  Identities=8%  Similarity=0.040  Sum_probs=21.5

Q ss_pred             CCeEEEEEcCCCCCchHHHHHHHHH
Q 030464           77 RGVHWAFIGSPRAKKHVYAEMLSKL  101 (177)
Q Consensus        77 ~~~~IlIiGpPGSGKSTlA~~LAk~  101 (177)
                      ...+|+|+|.+|+|||++..++...
T Consensus         5 ~~fKi~vvG~~~vGKTsli~~~~~~   29 (170)
T d2g6ba1           5 VAFKVMLVGDSGVGKTCLLVRFKDG   29 (170)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             eEEEEEEECCCCcCHHHHHHHHHhC
Confidence            3468999999999999999998663

>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.72  E-value=0.0017  Score=52.48  Aligned_cols=36  Identities=17%  Similarity=0.125  Sum_probs=28.2

Q ss_pred             ccCccCcccCCCeEEEEEcCCCCCchHHHHHHHHHh
Q 030464           67 LPDTEGRERRRGVHWAFIGSPRAKKHVYAEMLSKLL  102 (177)
Q Consensus        67 ~~~~~~~~~~~~~~IlIiGpPGSGKSTlA~~LAk~l  102 (177)
                      .+..-.....++-.+.|+||.||||||+.+.|+..+
T Consensus        51 vL~~isl~i~~Ge~vaivG~nGsGKSTLl~~i~Gl~   86 (281)
T d1r0wa_          51 VLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGEL   86 (281)
T ss_dssp             EEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSS
T ss_pred             EEeCeEEEEcCCCEEEEECCCCChHHHHHHHHhCCC
Confidence            344444455678889999999999999999997654

>d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Gene 4 protein (g4p, DNA primase), helicase domain
species: Bacteriophage T7 [TaxId: 10760]

Probab=95.71  E-value=0.002  Score=50.13  Aligned_cols=48  Identities=8%  Similarity=-0.019  Sum_probs=34.1

Q ss_pred             CCccccCccCcccCCCeEEEEEcCCCCCchHHHHHHHHH----hCC--CeeeCc
Q 030464           63 RSVTLPDTEGRERRRGVHWAFIGSPRAKKHVYAEMLSKL----LEV--PRISMS  110 (177)
Q Consensus        63 ~~~~~~~~~~~~~~~~~~IlIiGpPGSGKSTlA~~LAk~----lgl--~~Is~~  110 (177)
                      ...+.++.......++-.++|.|+||+|||+++..++-.    .|.  .++++.
T Consensus        20 TG~~~lD~~~~G~~~G~l~vi~G~~G~GKT~~~~~la~~~a~~~g~~v~~~s~E   73 (277)
T d1cr2a_          20 SGCTGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAMLE   73 (277)
T ss_dssp             CSCTTHHHHHCSBCTTCEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEESS
T ss_pred             CCchhHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHhhhhhcccceeEeeec
Confidence            456666654434567778999999999999999888753    244  466654

>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ0796
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=95.69  E-value=0.0017  Score=51.30  Aligned_cols=36  Identities=11%  Similarity=0.130  Sum_probs=28.7

Q ss_pred             ccCccCcccCCCeEEEEEcCCCCCchHHHHHHHHHh
Q 030464           67 LPDTEGRERRRGVHWAFIGSPRAKKHVYAEMLSKLL  102 (177)
Q Consensus        67 ~~~~~~~~~~~~~~IlIiGpPGSGKSTlA~~LAk~l  102 (177)
                      .++.-.....++-.+.|+||.||||||+.+.|+--.
T Consensus        20 al~~isl~i~~Ge~~~iiG~sGsGKSTLl~~i~gl~   55 (230)
T d1l2ta_          20 ALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLD   55 (230)
T ss_dssp             EEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEeceEEEEcCCCEEEEECCCCCCcchhhHhccCCC
Confidence            355555666788899999999999999999886543

>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein engB
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=95.67  E-value=0.0026  Score=46.03  Aligned_cols=21  Identities=19%  Similarity=0.186  Sum_probs=19.2

Q ss_pred             EEEEEcCCCCCchHHHHHHHH
Q 030464           80 HWAFIGSPRAKKHVYAEMLSK  100 (177)
Q Consensus        80 ~IlIiGpPGSGKSTlA~~LAk  100 (177)
                      .|+|+|.|++||||+..+|..
T Consensus         2 ~I~lvG~~nvGKSsLin~l~~   22 (184)
T d2cxxa1           2 TIIFAGRSNVGKSTLIYRLTG   22 (184)
T ss_dssp             EEEEEEBTTSSHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhC
Confidence            589999999999999999975

>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoQ
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.67  E-value=0.003  Score=46.56  Aligned_cols=26  Identities=8%  Similarity=-0.017  Sum_probs=22.4

Q ss_pred             CCCeEEEEEcCCCCCchHHHHHHHHH
Q 030464           76 RRGVHWAFIGSPRAKKHVYAEMLSKL  101 (177)
Q Consensus        76 ~~~~~IlIiGpPGSGKSTlA~~LAk~  101 (177)
                      ...++|+|+|.+|+|||++..++.+.
T Consensus         7 ~~~~Ki~lvG~~~vGKTsLi~r~~~~   32 (185)
T d2atxa1           7 ALMLKCVVVGDGAVGKTCLLMSYAND   32 (185)
T ss_dssp             EEEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred             CcEEEEEEECCCCCCHHHHHHHHhhC
Confidence            34578999999999999999998763

>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein GEM
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.65  E-value=0.003  Score=46.07  Aligned_cols=23  Identities=17%  Similarity=0.294  Sum_probs=20.4

Q ss_pred             eEEEEEcCCCCCchHHHHHHHHH
Q 030464           79 VHWAFIGSPRAKKHVYAEMLSKL  101 (177)
Q Consensus        79 ~~IlIiGpPGSGKSTlA~~LAk~  101 (177)
                      -+|+|+|.+|+|||++..++...
T Consensus         4 ~Kv~lvG~~~vGKTsLi~~~~~~   26 (172)
T d2g3ya1           4 YRVVLIGEQGVGKSTLANIFAGV   26 (172)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHCC
T ss_pred             EEEEEECCCCcCHHHHHHHHHhC
Confidence            47999999999999999998753

>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Methionine import ATP-binding protein MetN
species: Escherichia coli [TaxId: 562]

Probab=95.60  E-value=0.0015  Score=51.90  Aligned_cols=36  Identities=17%  Similarity=0.175  Sum_probs=28.5

Q ss_pred             cccCccCcccCCCeEEEEEcCCCCCchHHHHHHHHH
Q 030464           66 TLPDTEGRERRRGVHWAFIGSPRAKKHVYAEMLSKL  101 (177)
Q Consensus        66 ~~~~~~~~~~~~~~~IlIiGpPGSGKSTlA~~LAk~  101 (177)
                      ..++.-+....++-.+.|+||.||||||+.+.|+--
T Consensus        19 ~al~~vsl~i~~Ge~~~iiG~sGsGKSTLl~~i~Gl   54 (240)
T d3dhwc1          19 QALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLL   54 (240)
T ss_dssp             EEEEEEEEEECSSCEEEEEESTTSSHHHHHHHHTTS
T ss_pred             EEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHcCC
Confidence            345555556678888999999999999999988653

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.55  E-value=0.0021  Score=46.74  Aligned_cols=24  Identities=17%  Similarity=0.065  Sum_probs=11.0

Q ss_pred             CCeEEEEEcCCCCCchHHHHHHHH
Q 030464           77 RGVHWAFIGSPRAKKHVYAEMLSK  100 (177)
Q Consensus        77 ~~~~IlIiGpPGSGKSTlA~~LAk  100 (177)
                      +..+|+|+|.||+|||++..+|..
T Consensus         5 ~~~Ki~vvG~~~vGKTsLi~~l~~   28 (173)
T d2fu5c1           5 YLFKLLLIGDSGVGKTCVLFRFSE   28 (173)
T ss_dssp             EEEEEEEECCCCC-----------
T ss_pred             EEEEEEEECCCCcCHHHHHHHHHh
Confidence            346799999999999999988864

>d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric traffic ATPase, HP0525
species: Helicobacter pylori [TaxId: 210]

Probab=95.53  E-value=0.0027  Score=52.14  Aligned_cols=34  Identities=21%  Similarity=0.322  Sum_probs=26.6

Q ss_pred             CeEEEEEcCCCCCchHHHHHHHHHh--CCCeeeCch
Q 030464           78 GVHWAFIGSPRAKKHVYAEMLSKLL--EVPRISMSS  111 (177)
Q Consensus        78 ~~~IlIiGpPGSGKSTlA~~LAk~l--gl~~Is~~d  111 (177)
                      +.+|+|.|++||||||+.+.|.+..  +...+.+.|
T Consensus       166 ~~nili~G~tgSGKTT~l~al~~~i~~~~rivtiEd  201 (323)
T d1g6oa_         166 GKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIED  201 (323)
T ss_dssp             TCCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEEES
T ss_pred             CCCEEEEeeccccchHHHHHHhhhcccccceeeccc
Confidence            3569999999999999999998765  344555554

>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoE (RND3)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.48  E-value=0.0039  Score=45.84  Aligned_cols=23  Identities=13%  Similarity=0.242  Sum_probs=20.7

Q ss_pred             eEEEEEcCCCCCchHHHHHHHHH
Q 030464           79 VHWAFIGSPRAKKHVYAEMLSKL  101 (177)
Q Consensus        79 ~~IlIiGpPGSGKSTlA~~LAk~  101 (177)
                      .+|+|+|.+|+|||++.+++.+.
T Consensus         3 ~KivliG~~~vGKTsli~r~~~~   25 (179)
T d1m7ba_           3 CKIVVVGDSQCGKTALLHVFAKD   25 (179)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHS
T ss_pred             eEEEEECCCCcCHHHHHHHHHhC
Confidence            57999999999999999988774

>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC)
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=95.46  E-value=0.0036  Score=49.76  Aligned_cols=23  Identities=22%  Similarity=0.482  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCCchHHHHHHHHHh
Q 030464           80 HWAFIGSPRAKKHVYAEMLSKLL  102 (177)
Q Consensus        80 ~IlIiGpPGSGKSTlA~~LAk~l  102 (177)
                      .+.|+||.||||||+.+.|+--+
T Consensus        26 ~~~liGpnGaGKSTll~~i~Gl~   48 (240)
T d2onka1          26 YCVLLGPTGAGKSVFLELIAGIV   48 (240)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCChHHHHHHHHHcCC
Confidence            45689999999999999997654

>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative multidrug export ATP-binding/permease protein SAV1866
species: Staphylococcus aureus [TaxId: 1280]

Probab=95.46  E-value=0.0015  Score=52.18  Aligned_cols=37  Identities=14%  Similarity=0.268  Sum_probs=29.6

Q ss_pred             cccCccCcccCCCeEEEEEcCCCCCchHHHHHHHHHh
Q 030464           66 TLPDTEGRERRRGVHWAFIGSPRAKKHVYAEMLSKLL  102 (177)
Q Consensus        66 ~~~~~~~~~~~~~~~IlIiGpPGSGKSTlA~~LAk~l  102 (177)
                      +.++.-.....++-++.|+|+.||||||+.+.|...+
T Consensus        32 ~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~   68 (255)
T d2hyda1          32 PILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFY   68 (255)
T ss_dssp             CSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSS
T ss_pred             cceeceEEEEcCCCEEEEECCCCCcHHHHHHHHHhcC
Confidence            3455555666788899999999999999999886544

>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Archaeon Thermococcus litoralis [TaxId: 2265]

Probab=95.44  E-value=0.004  Score=49.38  Aligned_cols=35  Identities=17%  Similarity=0.191  Sum_probs=26.9

Q ss_pred             cCccCcccCCCeEEEEEcCCCCCchHHHHHHHHHh
Q 030464           68 PDTEGRERRRGVHWAFIGSPRAKKHVYAEMLSKLL  102 (177)
Q Consensus        68 ~~~~~~~~~~~~~IlIiGpPGSGKSTlA~~LAk~l  102 (177)
                      ++.-.....++-.+.|+||.||||||+.+.|+-..
T Consensus        19 l~~vsl~i~~Ge~~~liG~sGaGKSTll~~i~gl~   53 (240)
T d1g2912          19 VREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLE   53 (240)
T ss_dssp             EEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred             EcceeeEEcCCCEEEEECCCCChHHHHHHHHhcCC
Confidence            33334445677789999999999999999997644

>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter PF0895
species: Pyrococcus furiosus [TaxId: 2261]

Probab=95.43  E-value=0.0026  Score=48.66  Aligned_cols=35  Identities=17%  Similarity=0.137  Sum_probs=27.7

Q ss_pred             cCccCcccCCCeEEEEEcCCCCCchHHHHHHHHHh
Q 030464           68 PDTEGRERRRGVHWAFIGSPRAKKHVYAEMLSKLL  102 (177)
Q Consensus        68 ~~~~~~~~~~~~~IlIiGpPGSGKSTlA~~LAk~l  102 (177)
                      ++.-.....++-.+.|+||.||||||+.+.|+..+
T Consensus        17 l~~is~~i~~Gei~~l~G~NGsGKSTLl~~i~gl~   51 (200)
T d1sgwa_          17 LERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYL   51 (200)
T ss_dssp             EEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EeceEEEEcCCCEEEEECCCCChHHHHHHHHhccc
Confidence            44444455678889999999999999999997643

>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=95.41  E-value=0.0031  Score=53.15  Aligned_cols=26  Identities=23%  Similarity=0.270  Sum_probs=22.0

Q ss_pred             CCeEEEEEcCCCCCchHHHHHHHHHh
Q 030464           77 RGVHWAFIGSPRAKKHVYAEMLSKLL  102 (177)
Q Consensus        77 ~~~~IlIiGpPGSGKSTlA~~LAk~l  102 (177)
                      .+-+++++|+||+|||+++..||++.
T Consensus        42 ~k~n~llvG~~GvGKtaiv~~la~~i   67 (387)
T d1qvra2          42 TKNNPVLIGEPGVGKTAIVEGLAQRI   67 (387)
T ss_dssp             SCCCCEEEECTTSCHHHHHHHHHHHH
T ss_pred             CCCCCeEECCCCCCHHHHHHHHHHHH
Confidence            44568999999999999999998763

>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Hypothetical protein PH0022, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=95.40  E-value=0.003  Score=50.15  Aligned_cols=35  Identities=14%  Similarity=0.182  Sum_probs=27.2

Q ss_pred             cCccCcccCCCeEEEEEcCCCCCchHHHHHHHHHh
Q 030464           68 PDTEGRERRRGVHWAFIGSPRAKKHVYAEMLSKLL  102 (177)
Q Consensus        68 ~~~~~~~~~~~~~IlIiGpPGSGKSTlA~~LAk~l  102 (177)
                      ++.-.....++-.+.|+||.||||||+.+.|+-.+
T Consensus        22 l~~vsl~v~~Ge~~~liGpsGaGKSTLl~~i~Gl~   56 (239)
T d1v43a3          22 VNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLE   56 (239)
T ss_dssp             EEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EcceeEEECCCCEEEEECCCCChHHHHHHHHHcCC
Confidence            33444455677789999999999999999887644

>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=95.39  E-value=0.004  Score=45.36  Aligned_cols=22  Identities=23%  Similarity=0.312  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCCchHHHHHHHHH
Q 030464           80 HWAFIGSPRAKKHVYAEMLSKL  101 (177)
Q Consensus        80 ~IlIiGpPGSGKSTlA~~LAk~  101 (177)
                      .|+|+|.||+||||+..+|...
T Consensus         7 ~I~lvG~~~~GKSSLin~l~~~   28 (178)
T d1wf3a1           7 FVAIVGKPNVGKSTLLNNLLGV   28 (178)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            6999999999999999999764

>d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Bacillus stearothermophilus, PcrA [TaxId: 1422]

Probab=95.37  E-value=0.0031  Score=49.68  Aligned_cols=15  Identities=7%  Similarity=0.011  Sum_probs=13.0

Q ss_pred             EEEEcCCCCCchHHH
Q 030464           81 WAFIGSPRAKKHVYA   95 (177)
Q Consensus        81 IlIiGpPGSGKSTlA   95 (177)
                      ++|.|+|||||||++
T Consensus        27 ~lV~g~aGSGKTt~l   41 (318)
T d1pjra1          27 LLIMAGAGSGKTRVL   41 (318)
T ss_dssp             EEEEECTTSCHHHHH
T ss_pred             EEEEecCCccHHHHH
Confidence            778899999999764

>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.36  E-value=0.0045  Score=44.93  Aligned_cols=26  Identities=12%  Similarity=0.322  Sum_probs=22.8

Q ss_pred             CCeEEEEEcCCCCCchHHHHHHHHHh
Q 030464           77 RGVHWAFIGSPRAKKHVYAEMLSKLL  102 (177)
Q Consensus        77 ~~~~IlIiGpPGSGKSTlA~~LAk~l  102 (177)
                      |.++|+|+|..|+|||++..++....
T Consensus         1 ke~Kiv~lG~~~vGKTsll~r~~~~~   26 (200)
T d2bcjq2           1 RELKLLLLGTGESGKSTFIKQMRIIH   26 (200)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred             CeeEEEEECCCCCCHHHHHHHHhCCC
Confidence            45789999999999999999997653

>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Sulfate/molybdate ABC transporter, ATP-binding protein
species: Methanosarcina acetivorans [TaxId: 2214]

Probab=95.24  E-value=0.0022  Score=50.66  Aligned_cols=35  Identities=17%  Similarity=0.316  Sum_probs=27.4

Q ss_pred             cCccCcccCCCeEEEEEcCCCCCchHHHHHHHHHh
Q 030464           68 PDTEGRERRRGVHWAFIGSPRAKKHVYAEMLSKLL  102 (177)
Q Consensus        68 ~~~~~~~~~~~~~IlIiGpPGSGKSTlA~~LAk~l  102 (177)
                      ++.-+....++-.+.|+||.||||||+.+.|+--.
T Consensus        16 L~~vs~~i~~Ge~~~liGpsGaGKSTll~~l~Gl~   50 (229)
T d3d31a2          16 LDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFH   50 (229)
T ss_dssp             EEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSS
T ss_pred             EeeeEEEECCCCEEEEECCCCCcHHHHHHHHhcCc
Confidence            33344455677889999999999999999997644

>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Chloroplast protein translocon GTPase Toc34
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=95.19  E-value=0.0046  Score=48.59  Aligned_cols=26  Identities=8%  Similarity=-0.001  Sum_probs=22.7

Q ss_pred             CCCeEEEEEcCCCCCchHHHHHHHHH
Q 030464           76 RRGVHWAFIGSPRAKKHVYAEMLSKL  101 (177)
Q Consensus        76 ~~~~~IlIiGpPGSGKSTlA~~LAk~  101 (177)
                      ...++|+|+|.||+||||+...|..+
T Consensus        30 ~~~l~I~LvG~tg~GKSSliN~ilg~   55 (257)
T d1h65a_          30 VNSLTILVMGKGGVGKSSTVNSIIGE   55 (257)
T ss_dssp             CCEEEEEEEESTTSSHHHHHHHHHTS
T ss_pred             CCCcEEEEECCCCCcHHHHHHHHhCC
Confidence            46789999999999999999998643

>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ATP-binding subunit of the histidine permease
species: Salmonella typhimurium [TaxId: 90371]

Probab=95.17  E-value=0.0031  Score=50.33  Aligned_cols=33  Identities=18%  Similarity=0.200  Sum_probs=26.6

Q ss_pred             cCccCcccCCCeEEEEEcCCCCCchHHHHHHHH
Q 030464           68 PDTEGRERRRGVHWAFIGSPRAKKHVYAEMLSK  100 (177)
Q Consensus        68 ~~~~~~~~~~~~~IlIiGpPGSGKSTlA~~LAk  100 (177)
                      ++.-.....++-.+.|+|+.||||||+++.|+-
T Consensus        18 l~~vs~~i~~GEi~~iiG~sGsGKSTLl~~i~G   50 (258)
T d1b0ua_          18 LKGVSLQARAGDVISIIGSSGSGKSTFLRCINF   50 (258)
T ss_dssp             EEEEEEEECTTCEEEEECCTTSSHHHHHHHHTT
T ss_pred             EcceeeEEcCCCEEEEECCCCCcHHHHHHHHHc
Confidence            344445556788899999999999999999864

>d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Escherichia coli, RepD [TaxId: 562]

Probab=95.16  E-value=0.0046  Score=47.99  Aligned_cols=15  Identities=7%  Similarity=0.000  Sum_probs=12.9

Q ss_pred             EEEEcCCCCCchHHH
Q 030464           81 WAFIGSPRAKKHVYA   95 (177)
Q Consensus        81 IlIiGpPGSGKSTlA   95 (177)
                      ++|.|+|||||||++
T Consensus        17 ~lI~g~aGTGKTt~l   31 (306)
T d1uaaa1          17 CLVLAGAGSGKTRVI   31 (306)
T ss_dssp             EEECCCTTSCHHHHH
T ss_pred             EEEEeeCCccHHHHH
Confidence            678899999999764

>d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor SelB, N-terminal domain
species: Methanococcus maripaludis [TaxId: 39152]

Probab=95.15  E-value=0.0046  Score=45.46  Aligned_cols=25  Identities=12%  Similarity=0.283  Sum_probs=22.5

Q ss_pred             CCCeEEEEEcCCCCCchHHHHHHHH
Q 030464           76 RRGVHWAFIGSPRAKKHVYAEMLSK  100 (177)
Q Consensus        76 ~~~~~IlIiGpPGSGKSTlA~~LAk  100 (177)
                      .|.++|.|+|.|.+||||+..+|.+
T Consensus         3 ~k~inIaiiG~~naGKSTL~n~L~~   27 (179)
T d1wb1a4           3 FKNINLGIFGHIDHGKTTLSKVLTE   27 (179)
T ss_dssp             CEEEEEEEEECTTSSHHHHHHHHHT
T ss_pred             CCCEEEEEEeCCCCcHHHHHHHHHH
Confidence            3678899999999999999999975

>d1byia_ c.37.1.10 (A:) Dethiobiotin synthetase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Dethiobiotin synthetase
species: Escherichia coli [TaxId: 562]

Probab=95.14  E-value=0.0065  Score=44.61  Aligned_cols=30  Identities=13%  Similarity=0.079  Sum_probs=23.7

Q ss_pred             eEEEEEcC-CCCCchHHHHHHHHHh---CCCeee
Q 030464           79 VHWAFIGS-PRAKKHVYAEMLSKLL---EVPRIS  108 (177)
Q Consensus        79 ~~IlIiGp-PGSGKSTlA~~LAk~l---gl~~Is  108 (177)
                      ++++|+|- +|+||||++--||..+   |..++=
T Consensus         2 ~~~~i~gt~~GVGKTtvs~~La~aLa~~G~rVl~   35 (224)
T d1byia_           2 KRYFVTGTDTEVGKTVASCALLQAAKAAGYRTAG   35 (224)
T ss_dssp             EEEEEEESSTTSCHHHHHHHHHHHHHHTTCCEEE
T ss_pred             ceEEEEECCCCccHHHHHHHHHHHHHHCCCeEEE
Confidence            68999997 6999999998888765   555433

>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=95.14  E-value=0.0052  Score=44.19  Aligned_cols=21  Identities=24%  Similarity=0.319  Sum_probs=19.1

Q ss_pred             EEEEEcCCCCCchHHHHHHHH
Q 030464           80 HWAFIGSPRAKKHVYAEMLSK  100 (177)
Q Consensus        80 ~IlIiGpPGSGKSTlA~~LAk  100 (177)
                      .|+|+|.|++||||+..+|..
T Consensus         7 ~I~iiG~~nvGKSSLin~L~~   27 (179)
T d1egaa1           7 FIAIVGRPNVGKSTLLNKLLG   27 (179)
T ss_dssp             EEEEECSSSSSHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHhC
Confidence            488999999999999999975

>d1e2ka_ c.37.1.1 (A:) Thymidine kinase {Herpes simplex virus type 1, different strains [TaxId: 10298]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Herpes simplex virus type 1, different strains [TaxId: 10298]

Probab=95.11  E-value=0.0034  Score=52.00  Aligned_cols=26  Identities=15%  Similarity=0.028  Sum_probs=21.3

Q ss_pred             CeEEEEEcCCCCCchHHHHHHHHHhC
Q 030464           78 GVHWAFIGSPRAKKHVYAEMLSKLLE  103 (177)
Q Consensus        78 ~~~IlIiGpPGSGKSTlA~~LAk~lg  103 (177)
                      .++|.|-|+-||||||+++.|++.++
T Consensus         4 ~lrI~IEG~iGsGKTTl~~~La~~l~   29 (329)
T d1e2ka_           4 LLRVYIDGPHGMGKTTTTQLLVALGS   29 (329)
T ss_dssp             EEEEEECSCTTSSHHHHHHHHTC---
T ss_pred             ceEEEEECCcCCCHHHHHHHHHHHhC
Confidence            46799999999999999999998764

>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ran
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.11  E-value=0.0033  Score=45.74  Aligned_cols=23  Identities=9%  Similarity=0.125  Sum_probs=19.1

Q ss_pred             eEEEEEcCCCCCchHHHHHHHHH
Q 030464           79 VHWAFIGSPRAKKHVYAEMLSKL  101 (177)
Q Consensus        79 ~~IlIiGpPGSGKSTlA~~LAk~  101 (177)
                      -+|+|+|.+|+|||++..++...
T Consensus         4 ~Ki~vvG~~~vGKTsli~~~~~~   26 (170)
T d1i2ma_           4 FKLVLVGDGGTGKTTFVKRHLTG   26 (170)
T ss_dssp             EEEEEEECTTSSHHHHHHTTC--
T ss_pred             EEEEEECCCCcCHHHHHHHHHhC
Confidence            47999999999999999987653

>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Centaurin gamma 1, G domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.10  E-value=0.0073  Score=44.43  Aligned_cols=25  Identities=12%  Similarity=0.149  Sum_probs=21.9

Q ss_pred             CCeEEEEEcCCCCCchHHHHHHHHH
Q 030464           77 RGVHWAFIGSPRAKKHVYAEMLSKL  101 (177)
Q Consensus        77 ~~~~IlIiGpPGSGKSTlA~~LAk~  101 (177)
                      .-++|+|+|.+|+|||++..++...
T Consensus         4 p~~ki~vlG~~~vGKTsLi~~~~~~   28 (175)
T d2bmja1           4 PELRLGVLGDARSGKSSLIHRFLTG   28 (175)
T ss_dssp             CEEEEEEECCTTTTHHHHHHHHHHS
T ss_pred             CcEEEEEECCCCCCHHHHHHHHHhC
Confidence            4589999999999999999988663

>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein M-Ras (XRas)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.96  E-value=0.0072  Score=43.77  Aligned_cols=23  Identities=9%  Similarity=0.078  Sum_probs=20.7

Q ss_pred             CeEEEEEcCCCCCchHHHHHHHH
Q 030464           78 GVHWAFIGSPRAKKHVYAEMLSK  100 (177)
Q Consensus        78 ~~~IlIiGpPGSGKSTlA~~LAk  100 (177)
                      ..+|+|+|.+|+|||++..++..
T Consensus         4 t~Ki~lvG~~~vGKTsll~~~~~   26 (169)
T d1x1ra1           4 TYKLVVVGDGGVGKSALTIQFFQ   26 (169)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHH
T ss_pred             cEEEEEECCCCcCHHHHHHHHHh
Confidence            36899999999999999999876

>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Bacillus subtilis [TaxId: 1423]

Probab=94.95  E-value=0.004  Score=45.42  Aligned_cols=21  Identities=19%  Similarity=0.340  Sum_probs=18.8

Q ss_pred             EEEEEcCCCCCchHHHHHHHH
Q 030464           80 HWAFIGSPRAKKHVYAEMLSK  100 (177)
Q Consensus        80 ~IlIiGpPGSGKSTlA~~LAk  100 (177)
                      .|.|+|+|++||||+..+|..
T Consensus         3 ~VaiiG~~nvGKSSLin~L~~   23 (185)
T d1lnza2           3 DVGLVGFPSVGKSTLLSVVSS   23 (185)
T ss_dssp             CEEEESSTTSSHHHHHHHSEE
T ss_pred             eEEEECCCCCCHHHHHHHHhC
Confidence            589999999999999999853

>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Glucose transport protein GlcV, N-terminal domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=94.92  E-value=0.0023  Score=50.90  Aligned_cols=34  Identities=18%  Similarity=0.355  Sum_probs=27.5

Q ss_pred             cCccCcccCCCeEEEEEcCCCCCchHHHHHHHHH
Q 030464           68 PDTEGRERRRGVHWAFIGSPRAKKHVYAEMLSKL  101 (177)
Q Consensus        68 ~~~~~~~~~~~~~IlIiGpPGSGKSTlA~~LAk~  101 (177)
                      ++.-.....++-.+.|+||.||||||+.+.|+--
T Consensus        21 L~~vsl~i~~Ge~~~iiG~sGsGKSTll~~i~gl   54 (242)
T d1oxxk2          21 LDNVNINIENGERFGILGPSGAGKTTFMRIIAGL   54 (242)
T ss_dssp             EEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTS
T ss_pred             EeceEEEECCCCEEEEECCCCCcHHHHHHHHHcC
Confidence            4444455567888999999999999999998764

>d1tuea_ c.37.1.20 (A:) Replication protein E1 helicase domain {Human papillomavirus type 18 [TaxId: 333761]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication protein E1 helicase domain
species: Human papillomavirus type 18 [TaxId: 333761]

Probab=94.79  E-value=0.0078  Score=46.80  Aligned_cols=34  Identities=15%  Similarity=0.235  Sum_probs=28.1

Q ss_pred             CCCeEEEEEcCCCCCchHHHHHHHHHhCCCeeeC
Q 030464           76 RRGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISM  109 (177)
Q Consensus        76 ~~~~~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~  109 (177)
                      .|.-.++|.|||++|||++|..|.+-++-..++.
T Consensus        51 PKkn~i~~~GP~~TGKS~f~~sl~~~l~G~vis~   84 (205)
T d1tuea_          51 PKKNCLVFCGPANTGKSYFGMSFIHFIQGAVISF   84 (205)
T ss_dssp             TTCSEEEEESCGGGCHHHHHHHHHHHHTCEECCC
T ss_pred             CCceEEEEECCCCccHHHHHHHHHHHhCCEEEec
Confidence            4567899999999999999999999886555554

>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ1267
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=94.79  E-value=0.005  Score=48.81  Aligned_cols=35  Identities=14%  Similarity=0.139  Sum_probs=27.8

Q ss_pred             ccCccCcccCCCeEEEEEcCCCCCchHHHHHHHHH
Q 030464           67 LPDTEGRERRRGVHWAFIGSPRAKKHVYAEMLSKL  101 (177)
Q Consensus        67 ~~~~~~~~~~~~~~IlIiGpPGSGKSTlA~~LAk~  101 (177)
                      .++.-.....++-.+.|+||.||||||+.+.|+-.
T Consensus        19 aL~~vs~~v~~Gei~~liG~nGaGKSTLl~~i~Gl   53 (254)
T d1g6ha_          19 ALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGF   53 (254)
T ss_dssp             EEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred             EEcceEEEECCCCEEEEECCCCCcHHHHHHHHHCC
Confidence            34455555667888999999999999999998654

>d1g8fa3 c.37.1.15 (A:390-511) ATP sulfurylase C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.76  E-value=0.012  Score=42.28  Aligned_cols=56  Identities=11%  Similarity=0.125  Sum_probs=36.4

Q ss_pred             cCCCeEEEEEcCCCCCchHHHHHHHHHh----CCCeeeCchhhhhccCCCCchHHHHHHHHHcCC
Q 030464           75 RRRGVHWAFIGSPRAKKHVYAEMLSKLL----EVPRISMSSIVRQDLSPRSSLHKQIANAVNRGE  135 (177)
Q Consensus        75 ~~~~~~IlIiGpPGSGKSTlA~~LAk~l----gl~~Is~~dLlr~el~~~s~lgk~i~~~l~~G~  135 (177)
                      +.++..|+++|.+||||+|+|..|...+    |-.++++-   +.  .+...++..+.+..++|.
T Consensus         3 ~kqgf~i~~tg~~~~gk~~ia~al~~~l~q~~G~R~vtll---~~--~ni~ri~fva~e~~k~G~   62 (122)
T d1g8fa3           3 PKQGFSIVLGNSLTVSREQLSIALLSTFLQFGGGRYYKIF---EH--NNKTELLSLIQDFIGSGS   62 (122)
T ss_dssp             GGCCEEEEECTTCCSCHHHHHHHHHHHHTTSCSCCCEEEC---CC--TTCHHHHTTHHHHHHTTC
T ss_pred             CccceEEEEeCCCCCCHHHHHHHHHHHHHHhcCCcceEEe---cC--CCHHHHHHHHHHHHhcCC
Confidence            4578899999999999999999997665    33455532   10  012234444556666664

>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Branched chain aminoacid ABC transporter
species: Thermotoga maritima, TM1139 [TaxId: 2336]

Probab=94.73  E-value=0.0045  Score=48.80  Aligned_cols=36  Identities=19%  Similarity=0.148  Sum_probs=28.0

Q ss_pred             ccCccCcccCCCeEEEEEcCCCCCchHHHHHHHHHh
Q 030464           67 LPDTEGRERRRGVHWAFIGSPRAKKHVYAEMLSKLL  102 (177)
Q Consensus        67 ~~~~~~~~~~~~~~IlIiGpPGSGKSTlA~~LAk~l  102 (177)
                      .++.-+....++-.+.|+||.||||||+.+.|+-.+
T Consensus        21 al~~vs~~i~~Gei~~liGpnGaGKSTl~~~i~Gl~   56 (240)
T d1ji0a_          21 AIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLV   56 (240)
T ss_dssp             EEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEeeeeEEECCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence            344444555688889999999999999999986543

>d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric replicative helicase repA
species: Escherichia coli [TaxId: 562]

Probab=94.60  E-value=0.01  Score=45.65  Aligned_cols=24  Identities=25%  Similarity=0.195  Sum_probs=21.0

Q ss_pred             CeEEEEEcCCCCCchHHHHHHHHH
Q 030464           78 GVHWAFIGSPRAKKHVYAEMLSKL  101 (177)
Q Consensus        78 ~~~IlIiGpPGSGKSTlA~~LAk~  101 (177)
                      +-..+|.|+||+|||+++-.||..
T Consensus        29 g~~~~i~G~~G~GKS~l~l~la~~   52 (274)
T d1nlfa_          29 GTVGALVSPGGAGKSMLALQLAAQ   52 (274)
T ss_dssp             TSEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CcEEEEEeCCCCCHHHHHHHHHHH
Confidence            456789999999999999998875

>d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Hypothetical protein YjiA, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=94.56  E-value=0.0099  Score=45.72  Aligned_cols=23  Identities=13%  Similarity=-0.054  Sum_probs=20.3

Q ss_pred             eEEEEEcCCCCCchHHHHHHHHH
Q 030464           79 VHWAFIGSPRAKKHVYAEMLSKL  101 (177)
Q Consensus        79 ~~IlIiGpPGSGKSTlA~~LAk~  101 (177)
                      +.++|+|..||||||+.++|.+.
T Consensus         4 Pv~iitGFLGaGKTTll~~lL~~   26 (222)
T d1nija1           4 AVTLLTGFLGAGKTTLLRHILNE   26 (222)
T ss_dssp             EEEEEEESSSSSCHHHHHHHHHS
T ss_pred             CEEEEeeCCCCCHHHHHHHHHhc
Confidence            56889999999999999998775

>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=94.52  E-value=0.0098  Score=42.82  Aligned_cols=25  Identities=16%  Similarity=0.315  Sum_probs=22.0

Q ss_pred             CCeEEEEEcCCCCCchHHHHHHHHH
Q 030464           77 RGVHWAFIGSPRAKKHVYAEMLSKL  101 (177)
Q Consensus        77 ~~~~IlIiGpPGSGKSTlA~~LAk~  101 (177)
                      |.++|+|+|.-|+|||++..++...
T Consensus         1 ~e~KivllG~~~vGKTsl~~r~~~~   25 (195)
T d1svsa1           1 REVKLLLLGAGESGKSTIVKQMKII   25 (195)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHhhC
Confidence            4579999999999999999998654

>d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: HCV helicase domain
species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]

Probab=94.48  E-value=0.019  Score=39.85  Aligned_cols=29  Identities=3%  Similarity=-0.255  Sum_probs=22.0

Q ss_pred             CCeEEEEEcCCCCCchHHHHHHHHHhCCC
Q 030464           77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVP  105 (177)
Q Consensus        77 ~~~~IlIiGpPGSGKSTlA~~LAk~lgl~  105 (177)
                      .-.+.+|.+|.|||||+++-.+....|..
T Consensus         7 ~~~~~ll~apTGsGKT~~~~~~~~~~~~~   35 (136)
T d1a1va1           7 SFQVAHLHAPTGSGKSTKVPAAYAAQGYK   35 (136)
T ss_dssp             SCEEEEEECCTTSCTTTHHHHHHHTTTCC
T ss_pred             CCCEEEEEeCCCCCHHHHHHHHHHHcCCc
Confidence            44556889999999999997766665543

>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Thermus thermophilus [TaxId: 274]

Probab=94.46  E-value=0.0063  Score=44.19  Aligned_cols=21  Identities=19%  Similarity=0.389  Sum_probs=18.8

Q ss_pred             EEEEEcCCCCCchHHHHHHHH
Q 030464           80 HWAFIGSPRAKKHVYAEMLSK  100 (177)
Q Consensus        80 ~IlIiGpPGSGKSTlA~~LAk  100 (177)
                      .|.|+|.|++||||+..+|..
T Consensus         3 ~VaivG~~nvGKSTLin~L~~   23 (180)
T d1udxa2           3 DVGLVGYPNAGKSSLLAAMTR   23 (180)
T ss_dssp             SEEEECCGGGCHHHHHHHHCS
T ss_pred             EEEEECCCCCCHHHHHHHHhC
Confidence            488999999999999999954

>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ABC transporter involved in vitamin B12 uptake, BtuD
species: Escherichia coli [TaxId: 562]

Probab=94.40  E-value=0.0068  Score=47.31  Aligned_cols=33  Identities=18%  Similarity=0.160  Sum_probs=26.6

Q ss_pred             cCccCcccCCCeEEEEEcCCCCCchHHHHHHHH
Q 030464           68 PDTEGRERRRGVHWAFIGSPRAKKHVYAEMLSK  100 (177)
Q Consensus        68 ~~~~~~~~~~~~~IlIiGpPGSGKSTlA~~LAk  100 (177)
                      +..-.....++-.+.|+||.||||||+.+.|+.
T Consensus        15 l~~isl~I~~Gei~~iiG~nGaGKSTLl~~l~G   47 (231)
T d1l7vc_          15 LGPLSGEVRAGEILHLVGPNGAGKSTLLARMAG   47 (231)
T ss_dssp             SCSEEEEEETTCEEECBCCTTSSHHHHHHHHHT
T ss_pred             ecCEEEEEcCCCEEEEECCCCCcHHHHHHHHhC
Confidence            334444556888899999999999999998875

>d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Exodeoxyribonuclease V alpha chain (RecD)
species: Escherichia coli [TaxId: 562]

Probab=94.33  E-value=0.013  Score=48.61  Aligned_cols=21  Identities=19%  Similarity=0.123  Sum_probs=17.1

Q ss_pred             CeEEEEEcCCCCCchHHHHHH
Q 030464           78 GVHWAFIGSPRAKKHVYAEML   98 (177)
Q Consensus        78 ~~~IlIiGpPGSGKSTlA~~L   98 (177)
                      ....+|.||||+||||+...+
T Consensus       163 ~~~~vI~G~pGTGKTt~i~~~  183 (359)
T d1w36d1         163 RRISVISGGPGTGKTTTVAKL  183 (359)
T ss_dssp             BSEEEEECCTTSTHHHHHHHH
T ss_pred             CCeEEEEcCCCCCceehHHHH
Confidence            456889999999999887554

>d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=94.29  E-value=0.013  Score=44.53  Aligned_cols=24  Identities=21%  Similarity=0.187  Sum_probs=21.0

Q ss_pred             CeEEEEEcCCCCCchHHHHHHHHH
Q 030464           78 GVHWAFIGSPRAKKHVYAEMLSKL  101 (177)
Q Consensus        78 ~~~IlIiGpPGSGKSTlA~~LAk~  101 (177)
                      .++|+|+|-+++||||++.+|-..
T Consensus         3 ~ini~iiGhvd~GKSTL~~~Ll~~   26 (204)
T d2c78a3           3 HVNVGTIGHVDHGKTTLTAALTYV   26 (204)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CeEEEEEeCCCCcHHHHHHHHHHH
Confidence            378999999999999999998543

>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=94.23  E-value=0.011  Score=44.87  Aligned_cols=26  Identities=12%  Similarity=0.149  Sum_probs=22.4

Q ss_pred             CCeEEEEEcCCCCCchHHHHHHHHHh
Q 030464           77 RGVHWAFIGSPRAKKHVYAEMLSKLL  102 (177)
Q Consensus        77 ~~~~IlIiGpPGSGKSTlA~~LAk~l  102 (177)
                      +..+|+|+|..|+|||++.+++....
T Consensus         5 ~~~KilllG~~~vGKTsll~~~~~~~   30 (221)
T d1azta2           5 ATHRLLLLGAGESGKSTIVKQMRILH   30 (221)
T ss_dssp             HSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             hcCEEEEECCCCCCHHHHHHHHhcCC
Confidence            45789999999999999999986543

>d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor IF2/eIF5b, N-terminal (G) domain
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=94.20  E-value=0.013  Score=44.86  Aligned_cols=25  Identities=12%  Similarity=0.101  Sum_probs=21.6

Q ss_pred             CCeEEEEEcCCCCCchHHHHHHHHH
Q 030464           77 RGVHWAFIGSPRAKKHVYAEMLSKL  101 (177)
Q Consensus        77 ~~~~IlIiGpPGSGKSTlA~~LAk~  101 (177)
                      |+++|.|+|.|.+||||+..+|-..
T Consensus         4 r~p~IaIiGh~d~GKSTL~~~L~~~   28 (227)
T d1g7sa4           4 RSPIVSVLGHVDHGKTTLLDHIRGS   28 (227)
T ss_dssp             CCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCCEEEEEeCCCccHHHHHHHHHhh
Confidence            5567999999999999999998654

>d1u0ja_ c.37.1.20 (A:) Rep 40 protein helicase domain {Adeno-associated virus 2, AAV2 [TaxId: 10804]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Rep 40 protein helicase domain
species: Adeno-associated virus 2, AAV2 [TaxId: 10804]

Probab=94.16  E-value=0.016  Score=46.15  Aligned_cols=30  Identities=13%  Similarity=0.104  Sum_probs=25.8

Q ss_pred             CCCeEEEEEcCCCCCchHHHHHHHHHhCCC
Q 030464           76 RRGVHWAFIGSPRAKKHVYAEMLSKLLEVP  105 (177)
Q Consensus        76 ~~~~~IlIiGpPGSGKSTlA~~LAk~lgl~  105 (177)
                      .+...++|.|||++|||+++..|.+.+|..
T Consensus       102 ~k~n~~~l~G~~~tGKS~f~~~i~~~lg~~  131 (267)
T d1u0ja_         102 GKRNTIWLFGPATTGKTNIAEAIAHTVPFY  131 (267)
T ss_dssp             TTCCEEEEECSTTSSHHHHHHHHHHHSSCE
T ss_pred             CccEEEEEEcCCCCCHHHHHHHHHHHhcch
Confidence            466778899999999999999999988653

>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=94.14  E-value=0.013  Score=45.91  Aligned_cols=25  Identities=12%  Similarity=0.113  Sum_probs=21.7

Q ss_pred             CCCeEEEEEcCCCCCchHHHHHHHH
Q 030464           76 RRGVHWAFIGSPRAKKHVYAEMLSK  100 (177)
Q Consensus        76 ~~~~~IlIiGpPGSGKSTlA~~LAk  100 (177)
                      .++...+|+|++|+||||+..+|..
T Consensus        93 l~~kt~~~~G~SGVGKSTLiN~L~~  117 (225)
T d1u0la2          93 LKGKISTMAGLSGVGKSSLLNAINP  117 (225)
T ss_dssp             HSSSEEEEECSTTSSHHHHHHHHST
T ss_pred             hcCCeEEEECCCCCCHHHHHHhhcc
Confidence            3677899999999999999999844

>d1ny5a2 c.37.1.20 (A:138-384) Transcriptional activator sigm54 (NtrC1), C-terminal domain {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Transcriptional activator sigm54 (NtrC1), C-terminal domain
species: Aquifex aeolicus [TaxId: 63363]

Probab=94.10  E-value=0.013  Score=45.91  Aligned_cols=22  Identities=27%  Similarity=0.335  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCCchHHHHHHHHH
Q 030464           80 HWAFIGSPRAKKHVYAEMLSKL  101 (177)
Q Consensus        80 ~IlIiGpPGSGKSTlA~~LAk~  101 (177)
                      -|+|.|++|+||+++|+.|.+.
T Consensus        25 pvlI~Ge~GtGK~~~A~~ih~~   46 (247)
T d1ny5a2          25 PVLITGESGVGKEVVARLIHKL   46 (247)
T ss_dssp             CEEEECSTTSSHHHHHHHHHHH
T ss_pred             CEEEECCCCcCHHHHHHHHHHh
Confidence            3799999999999999999764

>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter TM0544
species: Thermotoga maritima [TaxId: 2336]

Probab=93.98  E-value=0.013  Score=45.96  Aligned_cols=35  Identities=23%  Similarity=0.261  Sum_probs=27.3

Q ss_pred             cCccCcccCCCeEEEEEcCCCCCchHHHHHHHHHh
Q 030464           68 PDTEGRERRRGVHWAFIGSPRAKKHVYAEMLSKLL  102 (177)
Q Consensus        68 ~~~~~~~~~~~~~IlIiGpPGSGKSTlA~~LAk~l  102 (177)
                      ++.-......+-.+.|+||.||||||+.+.|+..+
T Consensus        18 l~~vs~~v~~Gei~glvG~nGaGKSTLl~~l~G~~   52 (238)
T d1vpla_          18 LKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLI   52 (238)
T ss_dssp             EEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EccceeEEcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            44444455677789999999999999999987654

>d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Escherichia coli [TaxId: 562]

Probab=93.85  E-value=0.019  Score=45.57  Aligned_cols=48  Identities=13%  Similarity=-0.008  Sum_probs=33.3

Q ss_pred             CccccCc-cC-cccCCCeEEEEEcCCCCCchHHHHHHHHHh---C--CCeeeCch
Q 030464           64 SVTLPDT-EG-RERRRGVHWAFIGSPRAKKHVYAEMLSKLL---E--VPRISMSS  111 (177)
Q Consensus        64 ~~~~~~~-~~-~~~~~~~~IlIiGpPGSGKSTlA~~LAk~l---g--l~~Is~~d  111 (177)
                      -.+.+|. -| .....+..+.|.|+||||||++|-.++...   |  +.+|+...
T Consensus        38 G~~~lD~~Lg~GGi~~g~itei~G~~gsGKTtl~l~~~~~~q~~g~~~vyidtE~   92 (263)
T d1u94a1          38 GSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEH   92 (263)
T ss_dssp             SCHHHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred             CCHHHHHHhcCCCccCceEEEEecCCCcHHHHHHHHHHHHHHcCCCEEEEEcccc
Confidence            3445553 22 344577889999999999999999987653   3  34666654

>d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: YFV helicase domain
species: Yellow fever virus [TaxId: 11089]

Probab=93.84  E-value=0.015  Score=39.39  Aligned_cols=21  Identities=19%  Similarity=0.075  Sum_probs=17.5

Q ss_pred             CCCeEEEEEcCCCCCchHHHH
Q 030464           76 RRGVHWAFIGSPRAKKHVYAE   96 (177)
Q Consensus        76 ~~~~~IlIiGpPGSGKSTlA~   96 (177)
                      .++.+++|.+|||||||.++-
T Consensus         5 ~~~~~~il~~~tGsGKT~~~~   25 (140)
T d1yksa1           5 KKGMTTVLDFHPGAGKTRRFL   25 (140)
T ss_dssp             STTCEEEECCCTTSSTTTTHH
T ss_pred             HcCCcEEEEcCCCCChhHHHH
Confidence            467788999999999997763

>d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Extracellular secretion NTPase EpsE
species: Vibrio cholerae [TaxId: 666]

Probab=93.76  E-value=0.018  Score=48.17  Aligned_cols=37  Identities=11%  Similarity=-0.013  Sum_probs=27.2

Q ss_pred             EEEEEcCCCCCchHHHHHHHHHhC---CCeeeCchhhhhc
Q 030464           80 HWAFIGSPRAKKHVYAEMLSKLLE---VPRISMSSIVRQD  116 (177)
Q Consensus        80 ~IlIiGpPGSGKSTlA~~LAk~lg---l~~Is~~dLlr~e  116 (177)
                      .|+|.||.||||||....+-+..+   ..++++.|=+...
T Consensus       160 liLvtGpTGSGKSTTl~~~l~~~~~~~~~i~tiEdPiE~~  199 (401)
T d1p9ra_         160 IILVTGPTGSGKSTTLYAGLQELNSSERNILTVEDPIEFD  199 (401)
T ss_dssp             EEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEESSCCSC
T ss_pred             eEEEEcCCCCCccHHHHHHhhhhcCCCceEEEeccCcccc
Confidence            488999999999998888877653   4457776644433

>d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Deinococcus radiodurans [TaxId: 1299]

Probab=93.73  E-value=0.089  Score=41.69  Aligned_cols=50  Identities=14%  Similarity=-0.011  Sum_probs=33.8

Q ss_pred             ccccCccC--cccCCCeEEEEEcCCCCCchHHHHHHHHHh---C--CCeeeCchhhh
Q 030464           65 VTLPDTEG--RERRRGVHWAFIGSPRAKKHVYAEMLSKLL---E--VPRISMSSIVR  114 (177)
Q Consensus        65 ~~~~~~~~--~~~~~~~~IlIiGpPGSGKSTlA~~LAk~l---g--l~~Is~~dLlr  114 (177)
                      .+.+|...  .....+..+-|.|+||||||++|-.++...   |  +.+|+...-++
T Consensus        42 s~~lD~~Lg~GGip~g~itei~G~~~sGKT~l~l~~~~~aqk~g~~v~yiDtE~~~~   98 (268)
T d1xp8a1          42 SLSLDLALGVGGIPRGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAEHALD   98 (268)
T ss_dssp             CHHHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCC
T ss_pred             CHHHHHHhcCCCccCceEEEEecCCccchHHHHHHHHHHHHhCCCEEEEEECCccCC
Confidence            44444333  233577788999999999999999886643   3  45777665443

>d1ihua1 c.37.1.10 (A:1-296) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Arsenite-translocating ATPase ArsA
species: Escherichia coli [TaxId: 562]

Probab=93.72  E-value=0.022  Score=43.87  Aligned_cols=34  Identities=15%  Similarity=-0.048  Sum_probs=25.7

Q ss_pred             CCeEEEEEcCCCCCchHHHHHHHHHh---CC--CeeeCc
Q 030464           77 RGVHWAFIGSPRAKKHVYAEMLSKLL---EV--PRISMS  110 (177)
Q Consensus        77 ~~~~IlIiGpPGSGKSTlA~~LAk~l---gl--~~Is~~  110 (177)
                      .+..|++.|.=|+||||+|..||..+   |.  -.|+++
T Consensus         7 ~p~~i~~sGKGGVGKTTvaa~lA~~lA~~G~rVLlvD~D   45 (296)
T d1ihua1           7 IPPYLFFTGKGGVGKTSISCATAIRLAEQGKRVLLVSTD   45 (296)
T ss_dssp             CCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred             CCeEEEEECCCcChHHHHHHHHHHHHHHCCCCEEEEeCC
Confidence            45677889999999999888877765   43  356665

>d1c9ka_ c.37.1.11 (A:) Adenosylcobinamide kinase/adenosylcobinamide phosphate guanylyltransferase CobU {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Adenosylcobinamide kinase/adenosylcobinamide phosphate guanylyltransferase CobU
species: Salmonella typhimurium [TaxId: 90371]

Probab=93.35  E-value=0.012  Score=44.63  Aligned_cols=37  Identities=27%  Similarity=0.237  Sum_probs=25.0

Q ss_pred             EEEEcCCCCCchHHHHHHHHHhC-CCeeeCchhhhhcc
Q 030464           81 WAFIGSPRAKKHVYAEMLSKLLE-VPRISMSSIVRQDL  117 (177)
Q Consensus        81 IlIiGpPGSGKSTlA~~LAk~lg-l~~Is~~dLlr~el  117 (177)
                      |+|+|+.+||||.+|+.|+...+ +.||-++.....++
T Consensus         2 iLVtGGarSGKS~~AE~l~~~~~~~~YiAT~~~~D~em   39 (180)
T d1c9ka_           2 ILVTGGARSGKSRHAEALIGDAPQVLYIATSQILDDEM   39 (180)
T ss_dssp             EEEEECTTSSHHHHHHHHHCSCSSEEEEECCCC-----
T ss_pred             EEEECCCCccHHHHHHHHHhcCCCcEEEEccCCCCHHH
Confidence            79999999999999999987543 44555554444333

>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-inducible GTPase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.10  E-value=0.022  Score=47.51  Aligned_cols=23  Identities=17%  Similarity=0.221  Sum_probs=21.2

Q ss_pred             CCeEEEEEcCCCCCchHHHHHHH
Q 030464           77 RGVHWAFIGSPRAKKHVYAEMLS   99 (177)
Q Consensus        77 ~~~~IlIiGpPGSGKSTlA~~LA   99 (177)
                      .+++|.|+|.||+||||+...|-
T Consensus        55 ~~l~Iai~G~~n~GKSSLiNaL~   77 (400)
T d1tq4a_          55 SVLNVAVTGETGSGKSSFINTLR   77 (400)
T ss_dssp             CCEEEEEEECTTSSHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHh
Confidence            57899999999999999999885

>d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Transcription termination factor Rho, ATPase domain
species: Escherichia coli [TaxId: 562]

Probab=92.42  E-value=0.035  Score=44.93  Aligned_cols=26  Identities=19%  Similarity=0.346  Sum_probs=24.0

Q ss_pred             CCCeEEEEEcCCCCCchHHHHHHHHH
Q 030464           76 RRGVHWAFIGSPRAKKHVYAEMLSKL  101 (177)
Q Consensus        76 ~~~~~IlIiGpPGSGKSTlA~~LAk~  101 (177)
                      .++-++.|+|++|+|||+++..+++.
T Consensus        41 grGQr~~I~g~~g~GKT~l~~~i~~~   66 (289)
T d1xpua3          41 GRGQRGLIVAPPKAGKTMLLQNIAQS   66 (289)
T ss_dssp             BTTCEEEEEECSSSSHHHHHHHHHHH
T ss_pred             cCCCeeeEeCCCCCCHHHHHHHHHHH
Confidence            58899999999999999999999874

>d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Bacterial conjugative coupling protein TrwB
species: Escherichia coli [TaxId: 562]

Probab=92.32  E-value=0.032  Score=45.62  Aligned_cols=24  Identities=21%  Similarity=0.177  Sum_probs=19.4

Q ss_pred             CCCeEEEEEcCCCCCchHHHHHHH
Q 030464           76 RRGVHWAFIGSPRAKKHVYAEMLS   99 (177)
Q Consensus        76 ~~~~~IlIiGpPGSGKSTlA~~LA   99 (177)
                      ....+++|+|++|||||+..+.+.
T Consensus        48 ~~~~H~~I~G~tGsGKT~~l~~li   71 (433)
T d1e9ra_          48 AEPRHLLVNGATGTGKSVLLRELA   71 (433)
T ss_dssp             GGGGCEEEEECTTSSHHHHHHHHH
T ss_pred             cccceEEEEeCCCCcHHHHHHHHH
Confidence            345679999999999999876554

>d1ihua2 c.37.1.10 (A:308-586) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Arsenite-translocating ATPase ArsA
species: Escherichia coli [TaxId: 562]

Probab=92.29  E-value=0.049  Score=41.77  Aligned_cols=35  Identities=14%  Similarity=0.068  Sum_probs=24.4

Q ss_pred             CCCeEEEEEcCCCCCchHHHHHHHHHh---C--CCeeeCc
Q 030464           76 RRGVHWAFIGSPRAKKHVYAEMLSKLL---E--VPRISMS  110 (177)
Q Consensus        76 ~~~~~IlIiGpPGSGKSTlA~~LAk~l---g--l~~Is~~  110 (177)
                      .....|++.|.=|+||||++-.||..+   |  +-.|+.+
T Consensus        18 ~~~~iii~sGKGGVGKTT~a~nLA~~lA~~G~rVllvD~D   57 (279)
T d1ihua2          18 NEHGLIMLMGKGGVGKTTMAAAIAVRLADMGFDVHLTTSD   57 (279)
T ss_dssp             TSCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESC
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEeCC
Confidence            345566777999999999876666544   4  4456665

>d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Cow (Bos taurus), mitochondrial [TaxId: 9913]

Probab=91.98  E-value=0.047  Score=41.10  Aligned_cols=22  Identities=23%  Similarity=0.259  Sum_probs=20.3

Q ss_pred             eEEEEEcCCCCCchHHHHHHHH
Q 030464           79 VHWAFIGSPRAKKHVYAEMLSK  100 (177)
Q Consensus        79 ~~IlIiGpPGSGKSTlA~~LAk  100 (177)
                      ++|.|+|-+.+||||++.+|-+
T Consensus         4 ini~iiGHvd~GKSTL~~~l~~   25 (196)
T d1d2ea3           4 VNVGTIGHVDHGKTTLTAAITK   25 (196)
T ss_dssp             EEEEEESSTTSSHHHHHHHHHH
T ss_pred             cEEEEEeCCCCcHHHHHHHHHH
Confidence            7899999999999999998865

>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=91.87  E-value=0.014  Score=45.88  Aligned_cols=25  Identities=16%  Similarity=0.138  Sum_probs=21.0

Q ss_pred             CCeEEEEEcCCCCCchHHHHHHHHH
Q 030464           77 RGVHWAFIGSPRAKKHVYAEMLSKL  101 (177)
Q Consensus        77 ~~~~IlIiGpPGSGKSTlA~~LAk~  101 (177)
                      ++...+|+|++|+||||+..+|...
T Consensus        96 ~~~~~vl~G~SGVGKSSLiN~L~~~  120 (231)
T d1t9ha2          96 QDKTTVFAGQSGVGKSSLLNAISPE  120 (231)
T ss_dssp             TTSEEEEEESHHHHHHHHHHHHCC-
T ss_pred             ccceEEEECCCCccHHHHHHhhccH
Confidence            5677889999999999999998543

>d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=90.85  E-value=0.093  Score=41.68  Aligned_cols=49  Identities=14%  Similarity=-0.018  Sum_probs=33.2

Q ss_pred             ccccCccC--cccCCCeEEEEEcCCCCCchHHHHHHHHHh---C--CCeeeCchhh
Q 030464           65 VTLPDTEG--RERRRGVHWAFIGSPRAKKHVYAEMLSKLL---E--VPRISMSSIV  113 (177)
Q Consensus        65 ~~~~~~~~--~~~~~~~~IlIiGpPGSGKSTlA~~LAk~l---g--l~~Is~~dLl  113 (177)
                      .+.++...  .....+..+.|.|+||+|||++|-.++...   |  +.+|+...-+
T Consensus        45 ~~~lD~~lg~gG~~~g~i~e~~G~~~~GKT~l~l~~~~~~q~~g~~~vyIDtE~~~  100 (269)
T d1mo6a1          45 SIALDVALGIGGLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGVAAFIDAEHAL  100 (269)
T ss_dssp             CHHHHHHTSSSSBCSSSEEEEECSSSSSHHHHHHHHHHHHHHTTCEEEEEESSCCC
T ss_pred             CHHHHHhhccCCcccceeEEEecCCCcHHHHHHHHHHHHHhcCCCEEEEEECCccC
Confidence            44444333  244677888999999999999998876543   3  3466665533

>d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=90.74  E-value=0.076  Score=42.00  Aligned_cols=26  Identities=15%  Similarity=0.353  Sum_probs=22.8

Q ss_pred             cCCCeEEEEEcCCCCCchHHHHHHHH
Q 030464           75 RRRGVHWAFIGSPRAKKHVYAEMLSK  100 (177)
Q Consensus        75 ~~~~~~IlIiGpPGSGKSTlA~~LAk  100 (177)
                      +..+++|-|+|.|.|||||+-.+|.+
T Consensus         7 ~~~~~kiGivG~Pn~GKSTlfnalT~   32 (296)
T d1ni3a1           7 PGNNLKTGIVGMPNVGKSTFFRAITK   32 (296)
T ss_dssp             SSSCCEEEEEECSSSSHHHHHHHHHH
T ss_pred             CCCCcEEEEECCCCCCHHHHHHHHHC
Confidence            45678999999999999999999964

>d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase YlqF
species: Bacillus subtilis [TaxId: 1423]

Probab=90.25  E-value=0.07  Score=41.76  Aligned_cols=26  Identities=27%  Similarity=0.354  Sum_probs=23.4

Q ss_pred             CCCeEEEEEcCCCCCchHHHHHHHHH
Q 030464           76 RRGVHWAFIGSPRAKKHVYAEMLSKL  101 (177)
Q Consensus        76 ~~~~~IlIiGpPGSGKSTlA~~LAk~  101 (177)
                      .++++|.|+|.|.+||||+...|..+
T Consensus       110 ~~~~~v~vvG~PNvGKSsliN~L~~~  135 (273)
T d1puja_         110 PRAIRALIIGIPNVGKSTLINRLAKK  135 (273)
T ss_dssp             CCCEEEEEEESTTSSHHHHHHHHHTS
T ss_pred             CCceEEEEEecCccchhhhhhhhhcc
Confidence            46789999999999999999999764

>d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cell division protein MukB
species: Escherichia coli [TaxId: 562]

Probab=90.21  E-value=0.016  Score=40.86  Aligned_cols=23  Identities=17%  Similarity=0.079  Sum_probs=19.6

Q ss_pred             EEEEEcCCCCCchHHHHHHHHHh
Q 030464           80 HWAFIGSPRAKKHVYAEMLSKLL  102 (177)
Q Consensus        80 ~IlIiGpPGSGKSTlA~~LAk~l  102 (177)
                      ..+|+|+.||||||+..+|.-.+
T Consensus        26 ~tvi~G~NGsGKStil~Ai~~~L   48 (222)
T d1qhla_          26 VTTLSGGNGAGKSTTMAAFVTAL   48 (222)
T ss_dssp             HHHHHSCCSHHHHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHHh
Confidence            45788999999999999997654

>d1hyqa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Cell division regulator MinD
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=90.11  E-value=0.11  Score=38.24  Aligned_cols=23  Identities=17%  Similarity=0.111  Sum_probs=17.8

Q ss_pred             EEEEE-cCCCCCchHHHHHHHHHh
Q 030464           80 HWAFI-GSPRAKKHVYAEMLSKLL  102 (177)
Q Consensus        80 ~IlIi-GpPGSGKSTlA~~LAk~l  102 (177)
                      .|.|+ |..|+||||+|.-||..+
T Consensus         3 vIav~s~KGGvGKTtia~nlA~~l   26 (232)
T d1hyqa_           3 TITVASGKGGTGKTTITANLGVAL   26 (232)
T ss_dssp             EEEEEESSSCSCHHHHHHHHHHHH
T ss_pred             EEEEECCCCCChHHHHHHHHHHHH
Confidence            44455 889999999999877654

>d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=89.96  E-value=0.11  Score=38.47  Aligned_cols=24  Identities=13%  Similarity=0.224  Sum_probs=21.1

Q ss_pred             CC-eEEEEEcCCCCCchHHHHHHHH
Q 030464           77 RG-VHWAFIGSPRAKKHVYAEMLSK  100 (177)
Q Consensus        77 ~~-~~IlIiGpPGSGKSTlA~~LAk  100 (177)
                      +| ++|.|+|-..+||||++.+|..
T Consensus         6 ~p~ini~iiGhVd~GKSTL~~~L~~   30 (205)
T d2qn6a3           6 QPEVNIGVVGHVDHGKTTLVQAITG   30 (205)
T ss_dssp             CCCEEEEEECSTTSSHHHHHHHHHS
T ss_pred             CCCeEEEEEEccCCcHHHHHHHHHh
Confidence            44 7899999999999999999953

>d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain
species: Pseudomonas syringae pv. tomato [TaxId: 323]

Probab=89.41  E-value=0.14  Score=39.20  Aligned_cols=28  Identities=11%  Similarity=0.018  Sum_probs=23.4

Q ss_pred             CCeEEEEEcCCCCCchHHHHHHHHHhCC
Q 030464           77 RGVHWAFIGSPRAKKHVYAEMLSKLLEV  104 (177)
Q Consensus        77 ~~~~IlIiGpPGSGKSTlA~~LAk~lgl  104 (177)
                      .-++|+++|-..+||||++.+|....|.
T Consensus         8 ~~~~i~viGHVd~GKSTL~~~Ll~~~g~   35 (222)
T d1zunb3           8 EMLRFLTCGNVDDGKSTLIGRLLHDSKM   35 (222)
T ss_dssp             EEEEEEEECCTTSSHHHHHHHHHHHTTC
T ss_pred             CcceEEEEcCCCCCHHHHHHHHHHHcCC
Confidence            3467999999999999999999766554

>d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Thermotoga maritima [TaxId: 2336]

Probab=89.34  E-value=0.094  Score=40.42  Aligned_cols=23  Identities=13%  Similarity=0.173  Sum_probs=18.8

Q ss_pred             EEEEcCCCCCchHHHHHHHHHhC
Q 030464           81 WAFIGSPRAKKHVYAEMLSKLLE  103 (177)
Q Consensus        81 IlIiGpPGSGKSTlA~~LAk~lg  103 (177)
                      -+|+|+-|||||++-.+|+=.+|
T Consensus        27 nvlvG~NgsGKS~iL~Ai~~~lg   49 (308)
T d1e69a_          27 TAIVGPNGSGKSNIIDAIKWVFG   49 (308)
T ss_dssp             EEEECCTTTCSTHHHHHHHHTSC
T ss_pred             EEEECCCCCcHHHHHHHHHHHhC
Confidence            47889999999999988855443

>d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Archaeon Pyrococcus abyssi [TaxId: 29292]

Probab=89.22  E-value=0.11  Score=38.08  Aligned_cols=23  Identities=17%  Similarity=0.263  Sum_probs=20.4

Q ss_pred             CeEEEEEcCCCCCchHHHHHHHH
Q 030464           78 GVHWAFIGSPRAKKHVYAEMLSK  100 (177)
Q Consensus        78 ~~~IlIiGpPGSGKSTlA~~LAk  100 (177)
                      -++|.|+|-+.+||||+..+|..
T Consensus         5 ~inIaiiGhvd~GKSTL~~~L~g   27 (195)
T d1kk1a3           5 EVNIGMVGHVDHGKTTLTKALTG   27 (195)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHT
T ss_pred             cEEEEEEeccCCcHHHHHHHHHh
Confidence            36889999999999999999953

>d2fz4a1 c.37.1.19 (A:24-229) DNA repair protein RAD25 {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DNA repair protein RAD25
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=89.02  E-value=0.17  Score=37.65  Aligned_cols=28  Identities=14%  Similarity=0.014  Sum_probs=23.0

Q ss_pred             CeEEEEEcCCCCCchHHHHHHHHHhCCC
Q 030464           78 GVHWAFIGSPRAKKHVYAEMLSKLLEVP  105 (177)
Q Consensus        78 ~~~IlIiGpPGSGKSTlA~~LAk~lgl~  105 (177)
                      ..+.+|..|+|+|||.++-.+++.++-.
T Consensus        85 ~~~~ll~~~tG~GKT~~a~~~~~~~~~~  112 (206)
T d2fz4a1          85 DKRGCIVLPTGSGKTHVAMAAINELSTP  112 (206)
T ss_dssp             TSEEEEEESSSTTHHHHHHHHHHHSCSC
T ss_pred             CCCcEEEeCCCCCceehHHhHHHHhcCc
Confidence            3467788899999999999998887654

>d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1 ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of beta subunit of F1 ATP synthase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=88.96  E-value=0.12  Score=41.26  Aligned_cols=26  Identities=19%  Similarity=0.188  Sum_probs=23.7

Q ss_pred             CCCeEEEEEcCCCCCchHHHHHHHHH
Q 030464           76 RRGVHWAFIGSPRAKKHVYAEMLSKL  101 (177)
Q Consensus        76 ~~~~~IlIiGpPGSGKSTlA~~LAk~  101 (177)
                      .++-++.|+|++|+|||+++..++..
T Consensus        66 gkGQr~~If~~~g~GKt~l~~~i~~~   91 (276)
T d2jdid3          66 AKGGKIGLFGGAGVGKTVLIMELINN   91 (276)
T ss_dssp             ETTCEEEEEECTTSSHHHHHHHHHHH
T ss_pred             cCCCEEEeeCCCCCCHHHHHHHHHHH
Confidence            48889999999999999999999765

>d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Haemophilus influenzae [TaxId: 727]

Probab=88.82  E-value=0.13  Score=40.18  Aligned_cols=23  Identities=26%  Similarity=0.463  Sum_probs=20.8

Q ss_pred             CeEEEEEcCCCCCchHHHHHHHH
Q 030464           78 GVHWAFIGSPRAKKHVYAEMLSK  100 (177)
Q Consensus        78 ~~~IlIiGpPGSGKSTlA~~LAk  100 (177)
                      +++|-|+|.|.+||||+-.+|.+
T Consensus         2 ~~~~GivG~Pn~GKSTlf~~lt~   24 (278)
T d1jala1           2 GFKCGIVGLPNVGKSTLFNALTK   24 (278)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CceEEEECCCCCCHHHHHHHHHC
Confidence            57899999999999999999864

>d1wp9a1 c.37.1.19 (A:1-200) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: putative ATP-dependent RNA helicase PF2015
species: Pyrococcus furiosus [TaxId: 2261]

Probab=88.81  E-value=0.12  Score=37.35  Aligned_cols=21  Identities=14%  Similarity=0.156  Sum_probs=16.7

Q ss_pred             EEEEEcCCCCCchHHHHHHHH
Q 030464           80 HWAFIGSPRAKKHVYAEMLSK  100 (177)
Q Consensus        80 ~IlIiGpPGSGKSTlA~~LAk  100 (177)
                      +.+|.+|.|+|||.++..++.
T Consensus        25 n~lv~~pTGsGKT~i~~~~~~   45 (200)
T d1wp9a1          25 NCLIVLPTGLGKTLIAMMIAE   45 (200)
T ss_dssp             CEEEECCTTSCHHHHHHHHHH
T ss_pred             CeEEEeCCCCcHHHHHHHHHH
Confidence            467889999999987766654

>d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=88.54  E-value=0.15  Score=39.44  Aligned_cols=23  Identities=13%  Similarity=0.138  Sum_probs=19.8

Q ss_pred             eEEEEEcCCCCCchHHHHHHHHH
Q 030464           79 VHWAFIGSPRAKKHVYAEMLSKL  101 (177)
Q Consensus        79 ~~IlIiGpPGSGKSTlA~~LAk~  101 (177)
                      ..++|+||..+||||+.+.++-.
T Consensus        42 ~~~iiTGpN~~GKSt~lk~i~l~   64 (234)
T d1wb9a2          42 RMLIITGPNMGGKSTYMRQTALI   64 (234)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHH
T ss_pred             eEEEEeccCchhhHHHHHHHHHH
Confidence            45789999999999999998653

>d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=88.50  E-value=0.16  Score=40.50  Aligned_cols=25  Identities=12%  Similarity=-0.040  Sum_probs=22.0

Q ss_pred             EEEEEcCCCCCchHHHHHHHHHhCC
Q 030464           80 HWAFIGSPRAKKHVYAEMLSKLLEV  104 (177)
Q Consensus        80 ~IlIiGpPGSGKSTlA~~LAk~lgl  104 (177)
                      +|.|+|..|+||||++.+|...-|.
T Consensus         8 ni~i~gh~~~GKTtL~e~ll~~~g~   32 (276)
T d2bv3a2           8 NIGIAAHIDAGKTTTTERILYYTGR   32 (276)
T ss_dssp             EEEEEECTTSCHHHHHHHHHHHHTS
T ss_pred             EEEEEeCCCCCHHHHHHHHHHhcCc
Confidence            6999999999999999999766554

>d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=88.24  E-value=0.14  Score=40.72  Aligned_cols=24  Identities=25%  Similarity=0.275  Sum_probs=19.4

Q ss_pred             EEEEcCCCCCchHHHHHHHHHhCC
Q 030464           81 WAFIGSPRAKKHVYAEMLSKLLEV  104 (177)
Q Consensus        81 IlIiGpPGSGKSTlA~~LAk~lgl  104 (177)
                      -+|+|+.|||||++..+|+=.+|.
T Consensus        28 ~~i~G~NGsGKS~ileAi~~~lg~   51 (427)
T d1w1wa_          28 TSIIGPNGSGKSNMMDAISFVLGV   51 (427)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHTTC
T ss_pred             EEEECCCCCCHHHHHHHHHHHhCC
Confidence            457799999999999999755543

>d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus, EF-G-2 [TaxId: 274]

Probab=88.22  E-value=0.16  Score=40.07  Aligned_cols=25  Identities=20%  Similarity=0.167  Sum_probs=21.0

Q ss_pred             EEEEEcCCCCCchHHHHHHHHHhCC
Q 030464           80 HWAFIGSPRAKKHVYAEMLSKLLEV  104 (177)
Q Consensus        80 ~IlIiGpPGSGKSTlA~~LAk~lgl  104 (177)
                      +|.|+|..|+||||++.+|--.-|.
T Consensus         4 Nv~iiGh~~~GKTtL~e~ll~~~g~   28 (267)
T d2dy1a2           4 TVALVGHAGSGKTTLTEALLYKTGA   28 (267)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHTTS
T ss_pred             EEEEEcCCCCcHHHHHHHHHHHcCC
Confidence            5889999999999999999655443

>d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Dictyostelium discoideum [TaxId: 44689]

Probab=87.82  E-value=0.19  Score=39.23  Aligned_cols=25  Identities=16%  Similarity=0.058  Sum_probs=21.4

Q ss_pred             CCCeEEEEEcCCCCCchHHHHHHHH
Q 030464           76 RRGVHWAFIGSPRAKKHVYAEMLSK  100 (177)
Q Consensus        76 ~~~~~IlIiGpPGSGKSTlA~~LAk  100 (177)
                      ...++|+|+|..++||||+...|..
T Consensus        22 ~~lP~ivVvG~~ssGKSSliNaLlG   46 (306)
T d1jwyb_          22 LDLPQIVVVGSQSSGKSSVLENIVG   46 (306)
T ss_dssp             TCCCEEEEEECSSSSHHHHHHHHHT
T ss_pred             CCCCeEEEEeCCCCCHHHHHHHHhC
Confidence            3456899999999999999999864

>d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein PH0525
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=87.17  E-value=0.15  Score=40.25  Aligned_cols=22  Identities=14%  Similarity=0.320  Sum_probs=19.6

Q ss_pred             eEEEEEcCCCCCchHHHHHHHH
Q 030464           79 VHWAFIGSPRAKKHVYAEMLSK  100 (177)
Q Consensus        79 ~~IlIiGpPGSGKSTlA~~LAk  100 (177)
                      ++|-|+|.|.+||||+-..|..
T Consensus         1 ~~v~lvG~pn~GKStlfn~lt~   22 (319)
T d1wxqa1           1 MEIGVVGKPNVGKSTFFSAATL   22 (319)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHC
T ss_pred             CcEeEECCCCCCHHHHHHHHHC
Confidence            5789999999999999999943

>d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=86.86  E-value=0.18  Score=38.73  Aligned_cols=22  Identities=14%  Similarity=0.111  Sum_probs=19.0

Q ss_pred             EEEEEcCCCCCchHHHHHHHHH
Q 030464           80 HWAFIGSPRAKKHVYAEMLSKL  101 (177)
Q Consensus        80 ~IlIiGpPGSGKSTlA~~LAk~  101 (177)
                      .++|+||..+||||+.+.++-.
T Consensus        37 ~~iiTGpN~~GKSt~lk~i~l~   58 (224)
T d1ewqa2          37 LVLITGPNMAGKSTFLRQTALI   58 (224)
T ss_dssp             EEEEESCSSSSHHHHHHHHHHH
T ss_pred             EEEEECCCccccchhhhhhHHH
Confidence            5789999999999999987553

>d1cp2a_ c.37.1.10 (A:) Nitrogenase iron protein {Clostridium pasteurianum [TaxId: 1501]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Clostridium pasteurianum [TaxId: 1501]

Probab=86.48  E-value=0.23  Score=37.71  Aligned_cols=32  Identities=16%  Similarity=0.095  Sum_probs=23.9

Q ss_pred             eEEEEEcCCCCCchHHHHHHHHHh---C--CCeeeCc
Q 030464           79 VHWAFIGSPRAKKHVYAEMLSKLL---E--VPRISMS  110 (177)
Q Consensus        79 ~~IlIiGpPGSGKSTlA~~LAk~l---g--l~~Is~~  110 (177)
                      .+|.|.|.=|+||||+|--||..+   |  +-.|+.+
T Consensus         2 r~Iai~gKGGvGKTT~a~nLA~~LA~~G~rVllID~D   38 (269)
T d1cp2a_           2 RQVAIYGKGGIGKSTTTQNLTSGLHAMGKTIMVVGCD   38 (269)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEEEC
T ss_pred             CEEEEECCCcCCHHHHHHHHHHHHHhCCCcEEEEecC
Confidence            467789999999999998776654   4  3466664

>d1f60a3 c.37.1.8 (A:2-240) Elongation factor eEF-1alpha, N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=86.46  E-value=0.27  Score=37.89  Aligned_cols=27  Identities=15%  Similarity=0.012  Sum_probs=23.6

Q ss_pred             CeEEEEEcCCCCCchHHHHHHHHHhCC
Q 030464           78 GVHWAFIGSPRAKKHVYAEMLSKLLEV  104 (177)
Q Consensus        78 ~~~IlIiGpPGSGKSTlA~~LAk~lgl  104 (177)
                      .++|+|+|-..+||||++.+|.-..|.
T Consensus         6 ~iNi~iiGHvD~GKsTl~~~ll~~~g~   32 (239)
T d1f60a3           6 HINVVVIGHVDSGKSTTTGHLIYKCGG   32 (239)
T ss_dssp             EEEEEEEECTTSCHHHHHHHHHHHHSC
T ss_pred             ccEEEEEeCCCCCHHHHHHHHHHHcCC
Confidence            379999999999999999999766654

>d1g3qa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Cell division regulator MinD
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=85.93  E-value=0.29  Score=35.78  Aligned_cols=24  Identities=21%  Similarity=0.145  Sum_probs=18.7

Q ss_pred             eEEEEE-cCCCCCchHHHHHHHHHh
Q 030464           79 VHWAFI-GSPRAKKHVYAEMLSKLL  102 (177)
Q Consensus        79 ~~IlIi-GpPGSGKSTlA~~LAk~l  102 (177)
                      ..|.|. +..|+||||++..||..+
T Consensus         3 ~vIav~~~kGGvGKTtia~nLA~~l   27 (237)
T d1g3qa_           3 RIISIVSGKGGTGKTTVTANLSVAL   27 (237)
T ss_dssp             EEEEEECSSTTSSHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCcHHHHHHHHHHHH
Confidence            346666 678999999999887654

>d2axpa1 c.37.1.1 (A:2-165) Hypothetical protein YorR {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Hypothetical protein YorR
species: Bacillus subtilis [TaxId: 1423]

Probab=85.00  E-value=0.27  Score=34.83  Aligned_cols=31  Identities=32%  Similarity=0.192  Sum_probs=27.5

Q ss_pred             EEEEEcCCCCCchHHHHHHHHHhCCCeeeCc
Q 030464           80 HWAFIGSPRAKKHVYAEMLSKLLEVPRISMS  110 (177)
Q Consensus        80 ~IlIiGpPGSGKSTlA~~LAk~lgl~~Is~~  110 (177)
                      .|++-||-.|=|||+|..|++++.++.|.-.
T Consensus         2 liilegpdccfkstvaaklskelkypiikgs   32 (164)
T d2axpa1           2 LIILEGPDCCFKSTVAAKLSKELKYPIIKGS   32 (164)
T ss_dssp             EEEEECCSSSCHHHHHHHHHHHHTCCEEECC
T ss_pred             eEEEeCCchhhHHHHHHHHHhhhcCceecCc
Confidence            3778899999999999999999999988744

>d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal (G) domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=84.52  E-value=0.34  Score=36.45  Aligned_cols=27  Identities=15%  Similarity=0.012  Sum_probs=22.6

Q ss_pred             CeEEEEEcCCCCCchHHHHHHHHHhCC
Q 030464           78 GVHWAFIGSPRAKKHVYAEMLSKLLEV  104 (177)
Q Consensus        78 ~~~IlIiGpPGSGKSTlA~~LAk~lgl  104 (177)
                      .++|+|+|--++||||++.+|--..|+
T Consensus         3 ~iNi~viGHVd~GKTTL~~~Ll~~~g~   29 (224)
T d1jnya3           3 HLNLIVIGHVDHGKSTLVGRLLMDRGF   29 (224)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHHHBC
T ss_pred             ccEEEEEecCCCCHHHHHHHHHHHcCC
Confidence            378999999999999999988655543

>d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus type 2 [TaxId: 11060]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: Dengue virus helicase
species: Dengue virus type 2 [TaxId: 11060]

Probab=84.34  E-value=0.32  Score=37.00  Aligned_cols=19  Identities=21%  Similarity=-0.022  Sum_probs=16.1

Q ss_pred             CCCeEEEEEcCCCCCchHH
Q 030464           76 RRGVHWAFIGSPRAKKHVY   94 (177)
Q Consensus        76 ~~~~~IlIiGpPGSGKSTl   94 (177)
                      .++..++|.+|+|||||+.
T Consensus         7 ~~~~~~lv~~~TGsGKT~~   25 (305)
T d2bmfa2           7 RKKRLTIMDLHPGAGKTKR   25 (305)
T ss_dssp             STTCEEEECCCTTSSTTTT
T ss_pred             hcCCcEEEEECCCCCHHHH
Confidence            5677789999999999963

>d2p6ra3 c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Hel308 helicase
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=84.29  E-value=0.12  Score=37.98  Aligned_cols=19  Identities=26%  Similarity=0.244  Sum_probs=15.9

Q ss_pred             CeEEEEEcCCCCCchHHHH
Q 030464           78 GVHWAFIGSPRAKKHVYAE   96 (177)
Q Consensus        78 ~~~IlIiGpPGSGKSTlA~   96 (177)
                      +.++++.+|+|||||+.+.
T Consensus        40 ~~~~il~apTGsGKT~~a~   58 (202)
T d2p6ra3          40 GKNLLLAMPTAAGKTLLAE   58 (202)
T ss_dssp             CSCEEEECSSHHHHHHHHH
T ss_pred             CCCEEEEcCCCCchhHHHH
Confidence            4468999999999998764

>d1gkub1 c.37.1.16 (B:1-250) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Helicase-like "domain" of reverse gyrase
domain: Helicase-like "domain" of reverse gyrase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=83.79  E-value=0.22  Score=37.39  Aligned_cols=25  Identities=16%  Similarity=0.113  Sum_probs=19.6

Q ss_pred             CCCeEEEEEcCCCCCchHHHHHHHH
Q 030464           76 RRGVHWAFIGSPRAKKHVYAEMLSK  100 (177)
Q Consensus        76 ~~~~~IlIiGpPGSGKSTlA~~LAk  100 (177)
                      .++..+++++|+|+|||+.+...+.
T Consensus        56 l~g~~~~i~apTGsGKT~~~~~~~~   80 (237)
T d1gkub1          56 LRKESFAATAPTGVGKTSFGLAMSL   80 (237)
T ss_dssp             HTTCCEECCCCBTSCSHHHHHHHHH
T ss_pred             HCCCCEEEEecCCChHHHHHHHHHH
Confidence            3667799999999999987665443

>d2eyqa3 c.37.1.19 (A:546-778) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Transcription-repair coupling factor, TRCF
species: Escherichia coli [TaxId: 562]

Probab=82.98  E-value=0.49  Score=36.53  Aligned_cols=26  Identities=15%  Similarity=-0.052  Sum_probs=22.1

Q ss_pred             CCCeEEEEEcCCCCCchHHHHHHHHH
Q 030464           76 RRGVHWAFIGSPRAKKHVYAEMLSKL  101 (177)
Q Consensus        76 ~~~~~IlIiGpPGSGKSTlA~~LAk~  101 (177)
                      .+++..++.|..|||||.++-..+..
T Consensus        74 ~~~~~~LL~GdvGsGKT~V~~~a~~~   99 (233)
T d2eyqa3          74 PLAMDRLVCGDVGFGKTEVAMRAAFL   99 (233)
T ss_dssp             SSCCEEEEECCCCTTTHHHHHHHHHH
T ss_pred             cCccCeEEEcCCCCCcHHHHHHHHHH
Confidence            47788999999999999999876654

>d2jdia3 c.37.1.11 (A:95-379) Central domain of alpha subunit of F1 ATP synthase {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of alpha subunit of F1 ATP synthase
species: Cow (Bos taurus) [TaxId: 9913]

Probab=82.67  E-value=0.29  Score=39.11  Aligned_cols=26  Identities=23%  Similarity=0.077  Sum_probs=22.6

Q ss_pred             CCCeEEEEEcCCCCCchHHHHHHHHH
Q 030464           76 RRGVHWAFIGSPRAKKHVYAEMLSKL  101 (177)
Q Consensus        76 ~~~~~IlIiGpPGSGKSTlA~~LAk~  101 (177)
                      .++-++.|+|++|+|||+++..++..
T Consensus        66 g~GQr~~If~~~g~GKt~ll~~~~~~   91 (285)
T d2jdia3          66 GRGQRELIIGDRQTGKTSIAIDTIIN   91 (285)
T ss_dssp             BTTCBCEEEESTTSSHHHHHHHHHHH
T ss_pred             cCCCEEEeecCCCCChHHHHHHHHHh
Confidence            58889999999999999998877643

>d2afhe1 c.37.1.10 (E:1-289) Nitrogenase iron protein {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Azotobacter vinelandii [TaxId: 354]

Probab=82.59  E-value=0.44  Score=36.62  Aligned_cols=32  Identities=16%  Similarity=0.078  Sum_probs=21.8

Q ss_pred             eEEEEEcCCCCCchHHHHHHHHHh---CCC--eeeCc
Q 030464           79 VHWAFIGSPRAKKHVYAEMLSKLL---EVP--RISMS  110 (177)
Q Consensus        79 ~~IlIiGpPGSGKSTlA~~LAk~l---gl~--~Is~~  110 (177)
                      .+|+|.|.=|+||||+|--||..+   |..  .|+.+
T Consensus         3 r~IaisgKGGVGKTT~a~NLA~~LA~~G~rVLlID~D   39 (289)
T d2afhe1           3 RQCAIYGKGGIGKSTTTQNLVAALAEMGKKVMIVGCD   39 (289)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEEC
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEecC
Confidence            356778999999999766655433   544  45654

>d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=82.32  E-value=0.35  Score=37.30  Aligned_cols=24  Identities=21%  Similarity=0.105  Sum_probs=20.7

Q ss_pred             CCeEEEEEcCCCCCchHHHHHHHH
Q 030464           77 RGVHWAFIGSPRAKKHVYAEMLSK  100 (177)
Q Consensus        77 ~~~~IlIiGpPGSGKSTlA~~LAk  100 (177)
                      ..++|+|+|.-.+||||+...|..
T Consensus        25 ~~P~ivvvG~~SsGKSsliNaLlg   48 (299)
T d2akab1          25 DLPQIAVVGGQSAGKSSVLENFVG   48 (299)
T ss_dssp             CCCEEEEEEBTTSCHHHHHHHHHT
T ss_pred             CCCeEEEEcCCCCCHHHHHHHHhC
Confidence            345799999999999999999964

>d1r5ba3 c.37.1.8 (A:215-459) Eukaryotic peptide chain release factor ERF2, G domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Eukaryotic peptide chain release factor ERF2, G domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=82.21  E-value=0.31  Score=37.52  Aligned_cols=27  Identities=26%  Similarity=0.242  Sum_probs=22.7

Q ss_pred             CeEEEEEcCCCCCchHHHHHHHHHhCC
Q 030464           78 GVHWAFIGSPRAKKHVYAEMLSKLLEV  104 (177)
Q Consensus        78 ~~~IlIiGpPGSGKSTlA~~LAk~lgl  104 (177)
                      .++|+|+|-..+||||++.+|-...|.
T Consensus        24 ~iNi~iiGHVD~GKSTL~~~Ll~~~g~   50 (245)
T d1r5ba3          24 HVNIVFIGHVDAGKSTLGGNILFLTGM   50 (245)
T ss_dssp             EEEEEEEECGGGTHHHHHHHHHHHTTS
T ss_pred             ceEEEEEeeCCCCHHHHHHHHHHHcCC
Confidence            457999999999999999999665554

>d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.08  E-value=0.33  Score=38.25  Aligned_cols=25  Identities=20%  Similarity=0.157  Sum_probs=20.6

Q ss_pred             CCe-EEEEEcCCCCCchHHHHHHHHH
Q 030464           77 RGV-HWAFIGSPRAKKHVYAEMLSKL  101 (177)
Q Consensus        77 ~~~-~IlIiGpPGSGKSTlA~~LAk~  101 (177)
                      .++ .|.|+|+.++|||++...|...
T Consensus        30 ~~v~vvsi~G~~~sGKS~llN~l~~~   55 (277)
T d1f5na2          30 QPMVVVAIVGLYRTGKSYLMNKLAGK   55 (277)
T ss_dssp             SBEEEEEEEEBTTSSHHHHHHHHTTC
T ss_pred             CCEEEEEEECCCCCCHHHHHHHHcCC
Confidence            345 5569999999999999998764