Citrus Sinensis ID: 030479

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170------
Protein Sequence
MSRFRGLWQASLNATKRALTWNLEELMPPSERYIFNFNSKEELKKWHLYSDSEYGGLSSASLEITESGNGMNGIFSGNLSLDLSEGSKWNISRSGFCGMRSKKFDGFIDLDSYDTIAMKLKGDGRCYISTIYTENWVNSPGQQEDNSWQSFVFVPKDNWYIAKVSSFLLNLIFSET
Secondary Structure (PSIPRED)
cccHHHHHHHHHHHHHHHHHHcccccccccccEEEEcccHHccccEEEEEccEEccEEEEEEEEEccccccEEEEEEEEEccccccccccEEcccEEEEEEcccccccccccccEEEEEEEEcccEEEEEEEEccccccccccccccEEEEEEcccccEEEEEEccccEEEEEccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHHHHHHHHHHHHHHccccccEEEEcccHHHHHHcEEEcccccccEEEEEEEEcccccccEEEEEEEEEEccccccccccccccEEEEEccccccccccccccEEEEEEEccccEEEEEEEEccccccccccccccEEEEEEcccccEEEEEEEcEEEEEEEccc
Coil and Loop (DISEMBL)
MSRFRGLWQASLNATKRALTWNleelmppseryifNFNSKEElkkwhlysdseygglssasleitesgngmngifsgnlsldlsegskwnisrsgfcgmrskkfdgfidldsYDTIAMKLkgdgrcyistiytenwvnspgqqednswqsfvfvpkdnwYIAKVSSFLLNLIFSET
Flexible Loop (DISEMBL)
msrfrglwqaslNATKRALTWNLEELMPPSERYIFNFNSKEELKKWHLYSDSEYGGLSSASLEITESGNGMNGIFSGNLSLDLSEGSKWNISRSGFCGMRSKKFDGFIDLDSYDTIAMKLKGDGRCYISTIYTENWVNSPGQQEDNSWQSFVFVPKDNWYIAKVSSFLLNLIFSET
Low Complexity Region (SEG)
MSRFRGLWQASLNATKRALTWNLEELMPPSERYIFNFNSKEELKKWHLYSDSEYGGLSSASLEITESGNGMNGIFSGNLSLDLSEGSKWNISRSGFCGMRSKKFDGFIDLDSYDTIAMKLKGDGRCYISTIYTENWVNSPGQQEDNSWQSFVFVPKDNWYIAKVSSFLLNLIFSET
Disordered region (IsUnstruct)
*****GLWQASLNATKRALTWNLEELMPPSERYIFNFNSKEELKKWHLYSDSEYGGL************GMNGIFSGNLSLDLSEGSKWNISRSGFCGMRSKKFDGFIDLDSYDTIAMKLKGDGRCYISTIYTENWVNSPGQQEDNSWQSFVFVPKDNWYIAKVSSFLLNLIF***
Disordered Region (DISOPRED)
**RFR**WQASLNATKRALTWNLEELMPPSERYIFNFNSKEELKKWHLYSDSEYGGLSSASLEITESGNGMNGIFSGNLSLDLSEGSKWNISRSGFCGMRSKKFDGFIDLDSYDTIAMKLKGDGRCYISTIYTENWVNSPGQQEDNSWQSFVFVPKDNWYIAKVSSFLLNLIFS**
Disordered Region (DISEMBL)
MSRFRGLWQASLNATKRALTWNLEELMPPSERYIFNFNSKEELKKWHLYSDSEYGGLSSASLEITESGNGMNGIFSGNLSLDLSEGSKWNISRSGFCGMRSKKFDGFIDLDSYDTIAMKLKGDGRCYISTIYTENWVNSPGQQEDNSWQSFVFVPKDNWYIAKVSSFLLNLIFSET
Disordered Region (DISPRO)
*S*FRGLWQASLNATKRALTWNLEELMPPSERYIFNFNSKEELKKWHLYSDSEYGGLSSASLEITESGNGMNGIFSGNLSLDLSEGSKWNISRSGFCGMRSKKFDGFIDLDSYDTIAMKLKGDGRCYISTIYTENWVNSPGQQEDNSWQSFVFVPKDNWYIAKVSSFLLNLIFSE*
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSRFRGLWQASLNATKRALTWNLEELMPPSERYIFNFNSKEELKKWHLYSDSEYGGLSSASLEITESGNGMNGIFSGNLSLDLSEGSKWNISRSGFCGMRSKKFDGFIDLDSYDTIAMKLKGDGRCYISTIYTENWVNSPGQQEDNSWQSFVFVPKDNWYIAKVSSFLLNLIFSET
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	176	2.2.26 [Sep-21-2011]
Q9LQI7	227	Probable complex I interm	yes	no	0.931	0.722	0.789	6e-76
Q9VAI1	296	Probable complex I interm	yes	no	0.602	0.358	0.296	2e-09
O42636	278	Complex I intermediate-as	N/A	no	0.829	0.525	0.269	4e-08
Q0MQ83	327	Complex I intermediate-as	N/A	no	0.721	0.388	0.262	1e-06
Q0MQ84	327	Complex I intermediate-as	yes	no	0.721	0.388	0.262	7e-06
Q9CWX2	328	Complex I intermediate-as	yes	no	0.590	0.317	0.318	1e-05
Q9Y375	327	Complex I intermediate-as	yes	no	0.596	0.321	0.278	1e-05
Q0MQ82	327	Complex I intermediate-as	N/A	no	0.596	0.321	0.278	2e-05

>sp|Q9LQI7|CIA30_ARATH Probable complex I intermediate-associated protein 30 OS=Arabidopsis thaliana GN=At1g17350 PE=1 SV=2

 Score =  282 bits (722), Expect = 6e-76,   Method: Compositional matrix adjust.
 Identities = 131/166 (78%), Positives = 152/166 (91%), Gaps = 2/166 (1%)

Query: 1   MSRFRGLWQASLNATKRALTWNLEELMPPSERYIFNFNSKEELKKWHLYSDSEYGGLSSA 60
           MSRFR L QAS+NATK+ALTWN+EE +PP+E++IF F+SKE+LKKWHLYSDSEYGGLSSA
Sbjct: 1   MSRFRSLLQASVNATKKALTWNVEEWVPPAEKHIFKFHSKEDLKKWHLYSDSEYGGLSSA 60

Query: 61  SLEITESGNGMN--GIFSGNLSLDLSEGSKWNISRSGFCGMRSKKFDGFIDLDSYDTIAM 118
           SLEI + G+G +  G+FSGNLS+DLSEGSKWNISRSGFCGMRSKKFDGFIDLD YD IA+
Sbjct: 61  SLEIPDKGDGSDCTGVFSGNLSVDLSEGSKWNISRSGFCGMRSKKFDGFIDLDGYDAIAL 120

Query: 119 KLKGDGRCYISTIYTENWVNSPGQQEDNSWQSFVFVPKDNWYIAKV 164
           +++GDGRCYISTIYTENWVNSPGQ EDNSWQ+FVF PKD+WY AK+
Sbjct: 121 RIRGDGRCYISTIYTENWVNSPGQSEDNSWQAFVFAPKDSWYTAKI 166

Chaperone protein involved in the assembly of the mitochondrial NADH:ubiquinone oxidoreductase complex (complex I).
Arabidopsis thaliana (taxid: 3702)

>sp|Q9VAI1|CIA30_DROME Probable complex I intermediate-associated protein 30, mitochondrial OS=Drosophila melanogaster GN=CG7598 PE=2 SV=1

 Score = 62.0 bits (149), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 35/118 (29%), Positives = 68/118 (57%), Gaps = 12/118 (10%)

Query: 28  PPSERYIFNFNSKEELKKWHLYSDSEYG-GLSSASLEITESGNGMNGIFSGNLSLDLSEG 86
           P     +F+F + + L KW + +D+++G G S+A+LE++ +G G+   F G ++ D ++ 
Sbjct: 85  PGETDVVFDFKAPDVLDKWTVTTDADHGEGKSTATLELSAAGAGL---FHGQVNSDHTKD 141

Query: 87  SKWNISRSGFCGMRSK------KFDGFIDLDSYDTIAMKLKGDGRCYISTIYTENWVN 138
               I R+G+  +R+K      K +   D   Y+ + MK++GDGR Y+  ++TE + +
Sbjct: 142 G--IIKRTGYANIRTKRVRKSFKRETTYDWTQYNMLVMKVRGDGRSYLINLHTEGYFD 197

Chaperone protein involved in the assembly of the mitochondrial NADH:ubiquinone oxidoreductase complex (complex I).

Drosophila melanogaster (taxid: 7227)

>sp|O42636|CIA30_NEUCR Complex I intermediate-associated protein 30, mitochondrial OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=cia30 PE=1 SV=1

 Score = 57.4 bits (137), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 52/193 (26%), Positives = 77/193 (39%), Gaps = 47/193 (24%)

Query: 4   FRGLWQASLNATKR-----ALTWNLEELMPPSERYIFNFNSKEELKKWHLYSDSEYGGLS 58
           F+  W  SL+   R       + N+     P E  I NF + E +    L SD++ GG S
Sbjct: 9   FKSFWSRSLDELSRLTNIVVKSENIRGATGPRE--IHNFQTPESVADCKLLSDADVGGSS 66

Query: 59  SASLEITESGNGMNGI--------------------FSGNLSLDLSEGSKWNISRSGFCG 98
           +A L+     N +  +                    F G +SL+L    +  ISR+G+ G
Sbjct: 67  TAHLDWVPPPNAIPTVTAGDGSDRKPYTPIPGSYARFHGTISLELPTDRR-EISRTGYAG 125

Query: 99  MRSKKFD------GFIDLDSYDTIAMKLKGDGRCYISTIYTEN-----------WVNSPG 141
            R+          G  D+D Y  +AM++K D R Y   + TE+           +V  PG
Sbjct: 126 FRTLDRPPTIFGRGLWDIDPYAYLAMRVKTDARSYFVNVRTESVVPLDLHQHRLFVKKPG 185

Query: 142 QQEDN--SWQSFV 152
           Q E     W  FV
Sbjct: 186 QWETVLIKWNDFV 198

Chaperone protein involved in the assembly of the mitochondrial NADH:ubiquinone oxidoreductase complex (complex I).

Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) (taxid: 367110)

>sp|Q0MQ83|CIA30_GORGO Complex I intermediate-associated protein 30, mitochondrial OS=Gorilla gorilla gorilla GN=NDUFAF1 PE=2 SV=1

 Score = 52.8 bits (125), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 36/137 (26%), Positives = 68/137 (49%), Gaps = 10/137 (7%)

Query: 1   MSRFRGLWQASLNATKRALTWNLEELMPPSERYIFNFNSKEELKKWHLYSDSEYGGLSSA 60
           M  FR L    ++  +     +L E++    + ++ F  KE+L KW + SD   GG S  
Sbjct: 91  MYHFRHLKDEIVDHWRGPEGHSLHEVLLEQAKVVWQFRGKEDLDKWTVTSDKTIGGRSEV 150

Query: 61  SLEITESGNGMNGIFSGNLSLDLSEGSKWNISRSGFCGMRSKKFDGFI------DLDSYD 114
            L++ +  N  + +  G LS +  +  +   +RSG+C M+S+   G        D   ++
Sbjct: 151 FLKMGK--NNQSALLYGTLSSEAPQDGE--STRSGYCAMKSRIPRGAFERKMSYDWSQFN 206

Query: 115 TIAMKLKGDGRCYISTI 131
           T+ ++++GDGR ++  I
Sbjct: 207 TLYLRVRGDGRPWMVNI 223

Chaperone protein involved in the assembly of the mitochondrial NADH:ubiquinone oxidoreductase complex (complex I).

Gorilla gorilla gorilla (taxid: 9595)

>sp|Q0MQ84|CIA30_PANTR Complex I intermediate-associated protein 30, mitochondrial OS=Pan troglodytes GN=NDUFAF1 PE=2 SV=1

 Score = 50.1 bits (118), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 36/137 (26%), Positives = 66/137 (48%), Gaps = 10/137 (7%)

Query: 1   MSRFRGLWQASLNATKRALTWNLEELMPPSERYIFNFNSKEELKKWHLYSDSEYGGLSSA 60
           M  FR L    ++  +      L E++    + ++ F  KE+L KW + SD   GG S  
Sbjct: 91  MYHFRHLKDEIVDHWRGPEGHPLHEVLLEQAKVVWQFRGKEDLDKWTVTSDKTIGGRSEV 150

Query: 61  SLEITESGNGMNGIFSGNLSLDLSEGSKWNISRSGFCGMRSKKFDGFI------DLDSYD 114
            L++ +  N  + +  G LS +  +  +   +RSG+C M S+   G        D   ++
Sbjct: 151 FLKMGK--NNQSALLYGTLSSEAPQDGE--STRSGYCAMISRIPRGAFERKMSYDWSQFN 206

Query: 115 TIAMKLKGDGRCYISTI 131
           T+ ++++GDGR ++  I
Sbjct: 207 TLYLRVRGDGRPWMVNI 223

Chaperone protein involved in the assembly of the mitochondrial NADH:ubiquinone oxidoreductase complex (complex I).

Pan troglodytes (taxid: 9598)

>sp|Q9CWX2|CIA30_MOUSE Complex I intermediate-associated protein 30, mitochondrial OS=Mus musculus GN=Ndufaf1 PE=2 SV=2

 Score = 49.3 bits (116), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 37/116 (31%), Positives = 60/116 (51%), Gaps = 12/116 (10%)

Query: 23  LEELMPPSERYIFNFNSKEELKKWHLYSDSEYGGLSSASLEITESGNGMNGIFSGNLSLD 82
           L+E++    R ++ F  KE+L KW + SD   GG S   L++  S N  + +  G LS  
Sbjct: 114 LQEVIMEQARVVWQFREKEDLDKWIVTSDKTIGGRSEIFLKM--SKNNRSALLYGTLS-- 169

Query: 83  LSEGSKWNISR-SGFCGMRSKKFDGFI------DLDSYDTIAMKLKGDGRCYISTI 131
            SE  +   SR SG+C M S+   G        D   ++T+ ++++GDGR ++  I
Sbjct: 170 -SEPPQDGDSRQSGYCAMISRIPRGAFERKLSYDWSQFNTLYLRVRGDGRPWMVNI 224

Chaperone protein involved in the assembly of the mitochondrial NADH:ubiquinone oxidoreductase complex (complex I).

Mus musculus (taxid: 10090)

>sp|Q9Y375|CIA30_HUMAN Complex I intermediate-associated protein 30, mitochondrial OS=Homo sapiens GN=NDUFAF1 PE=1 SV=2

 Score = 48.9 bits (115), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 32/115 (27%), Positives = 59/115 (51%), Gaps = 10/115 (8%)

Query: 23  LEELMPPSERYIFNFNSKEELKKWHLYSDSEYGGLSSASLEITESGNGMNGIFSGNLSLD 82
           L E++    + ++ F  KE+L KW + SD   GG S   L++ +  N  + +  G LS +
Sbjct: 113 LHEVLLEQAKVVWQFRGKEDLDKWTVTSDKTIGGRSEVFLKMGK--NNQSALLYGTLSSE 170

Query: 83  LSEGSKWNISRSGFCGMRSKKFDGFI------DLDSYDTIAMKLKGDGRCYISTI 131
             +  +   +RSG+C M S+   G        D   ++T+ ++++GDGR ++  I
Sbjct: 171 APQDGE--STRSGYCAMISRIPRGAFERKMSYDWSQFNTLYLRVRGDGRPWMVNI 223

Chaperone protein involved in the assembly of the mitochondrial NADH:ubiquinone oxidoreductase complex (complex I).

Homo sapiens (taxid: 9606)

>sp|Q0MQ82|CIA30_PONPY Complex I intermediate-associated protein 30, mitochondrial OS=Pongo pygmaeus GN=NDUFAF1 PE=2 SV=1

 Score = 48.5 bits (114), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 32/115 (27%), Positives = 60/115 (52%), Gaps = 10/115 (8%)

Query: 23  LEELMPPSERYIFNFNSKEELKKWHLYSDSEYGGLSSASLEITESGNGMNGIFSGNLSLD 82
           L E++    + ++ F  KE+L KW + SD   GG S   L++ +  N  + +  G LS +
Sbjct: 113 LREVLLEQAKVVWQFRGKEDLDKWTVTSDKTIGGRSEVFLKMGK--NNQSALLYGTLSSE 170

Query: 83  LSEGSKWNISRSGFCGMRSK----KFDGFIDLD--SYDTIAMKLKGDGRCYISTI 131
                +   +RSG+C M S+     F+  +  D   ++T+ ++++GDGR ++  I
Sbjct: 171 APHDGE--STRSGYCAMISRIPRGAFERKVSYDWSQFNTLYLRVRGDGRPWMVNI 223

Chaperone protein involved in the assembly of the mitochondrial NADH:ubiquinone oxidoreductase complex (complex I).

Pongo pygmaeus (taxid: 9600)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	176
359483013	241	PREDICTED: probable complex I intermedia	0.982	0.717	0.84	4e-82
297742953	225	unnamed protein product [Vitis vinifera]	0.931	0.728	0.859	1e-80
147782669	237	hypothetical protein VITISV_015801 [Viti	0.937	0.696	0.854	1e-80
224107911	225	predicted protein [Populus trichocarpa]	0.931	0.728	0.847	7e-80
225442028	227	PREDICTED: probable complex I intermedia	0.931	0.722	0.849	4e-79
297844682	227	hypothetical protein ARALYDRAFT_471939 [	0.931	0.722	0.813	2e-75
222619192	291	hypothetical protein OsJ_03324 [Oryza sa	0.931	0.563	0.779	7e-75
238478513	236	putative complex I intermediate-associat	0.937	0.699	0.790	1e-74
115439685	229	Os01g0727400 [Oryza sativa Japonica Grou	0.931	0.716	0.779	2e-74
42562121	227	putative complex I intermediate-associat	0.931	0.722	0.789	3e-74

>gi|359483013|ref|XP_003632879.1| PREDICTED: probable complex I intermediate-associated protein 30-like isoform 2 [Vitis vinifera]

 Score =  308 bits (790), Expect = 4e-82,   Method: Compositional matrix adjust.
 Identities = 147/175 (84%), Positives = 160/175 (91%), Gaps = 2/175 (1%)

Query: 1   MSRFRGLWQASLNATKRALTWNLEELMPPSERYIFNFNSKEELKKWHLYSDSEYGGLSSA 60
           MSRFR LWQASLNAT++ALTWN+E  +PPSERYIFNFNSKEELKKWHLYSDSEYGG+SSA
Sbjct: 1   MSRFRSLWQASLNATRKALTWNVENWIPPSERYIFNFNSKEELKKWHLYSDSEYGGMSSA 60

Query: 61  SLEITESGNGMNG--IFSGNLSLDLSEGSKWNISRSGFCGMRSKKFDGFIDLDSYDTIAM 118
           SLEI ++GNG++G  IFSGNLSLDL EGSKWNI R GFCGMRSKKFDGFIDL+SYDTIA+
Sbjct: 61  SLEIMDAGNGLSGTGIFSGNLSLDLIEGSKWNIRRGGFCGMRSKKFDGFIDLESYDTIAL 120

Query: 119 KLKGDGRCYISTIYTENWVNSPGQQEDNSWQSFVFVPKDNWYIAKVSSFLLNLIF 173
           K+KGDGRCYISTIYTENWVNSP QQEDNSWQ+FVFVPKDNWYI K SS LL LI 
Sbjct: 121 KVKGDGRCYISTIYTENWVNSPAQQEDNSWQAFVFVPKDNWYITKASSVLLKLIL 175

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297742953|emb|CBI35820.3| unnamed protein product [Vitis vinifera]

 Score =  303 bits (777), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 141/164 (85%), Positives = 155/164 (94%)

Query: 1   MSRFRGLWQASLNATKRALTWNLEELMPPSERYIFNFNSKEELKKWHLYSDSEYGGLSSA 60
           MSRFR LWQASLNAT++ALTWN+E  +PPSERYIFNFNSKEELKKWHLYSDSEYGG+SSA
Sbjct: 1   MSRFRSLWQASLNATRKALTWNVENWIPPSERYIFNFNSKEELKKWHLYSDSEYGGMSSA 60

Query: 61  SLEITESGNGMNGIFSGNLSLDLSEGSKWNISRSGFCGMRSKKFDGFIDLDSYDTIAMKL 120
           SLEI ++GNG++GIFSGNLSLDL EGSKWNI R GFCGMRSKKFDGFIDL+SYDTIA+K+
Sbjct: 61  SLEIMDAGNGLSGIFSGNLSLDLIEGSKWNIRRGGFCGMRSKKFDGFIDLESYDTIALKV 120

Query: 121 KGDGRCYISTIYTENWVNSPGQQEDNSWQSFVFVPKDNWYIAKV 164
           KGDGRCYISTIYTENWVNSP QQEDNSWQ+FVFVPKDNWYI K+
Sbjct: 121 KGDGRCYISTIYTENWVNSPAQQEDNSWQAFVFVPKDNWYITKI 164

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147782669|emb|CAN61795.1| hypothetical protein VITISV_015801 [Vitis vinifera]

 Score =  303 bits (777), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 141/165 (85%), Positives = 155/165 (93%)

Query: 1   MSRFRGLWQASLNATKRALTWNLEELMPPSERYIFNFNSKEELKKWHLYSDSEYGGLSSA 60
           MSRFR LWQASLNAT++ALTWN+E  +PPSERYIFNFNSKEELKKWHLYSDSEYGG+SSA
Sbjct: 1   MSRFRSLWQASLNATRKALTWNVENWIPPSERYIFNFNSKEELKKWHLYSDSEYGGMSSA 60

Query: 61  SLEITESGNGMNGIFSGNLSLDLSEGSKWNISRSGFCGMRSKKFDGFIDLDSYDTIAMKL 120
           SLEI ++GNG++GIFSGNLSLDL EGSKWNI R GFCGMRSKKFDGFIDL+SYDTIA+K+
Sbjct: 61  SLEIMDAGNGLSGIFSGNLSLDLIEGSKWNIRRGGFCGMRSKKFDGFIDLESYDTIALKV 120

Query: 121 KGDGRCYISTIYTENWVNSPGQQEDNSWQSFVFVPKDNWYIAKVS 165
           KGDGRCYISTIYTENWVNSP QQEDNSWQ+FVFVPKDNWYI K +
Sbjct: 121 KGDGRCYISTIYTENWVNSPAQQEDNSWQAFVFVPKDNWYITKAN 165

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224107911|ref|XP_002314650.1| predicted protein [Populus trichocarpa] gi|222863690|gb|EEF00821.1| predicted protein [Populus trichocarpa]

 Score =  301 bits (771), Expect = 7e-80,   Method: Compositional matrix adjust.
 Identities = 139/164 (84%), Positives = 155/164 (94%)

Query: 1   MSRFRGLWQASLNATKRALTWNLEELMPPSERYIFNFNSKEELKKWHLYSDSEYGGLSSA 60
           MSRFR LWQASL+ATK+ALTWN+E+LMPP+ER IFNFNS+EELKKWHLYSDSEYGG SSA
Sbjct: 1   MSRFRSLWQASLDATKKALTWNVEDLMPPTERLIFNFNSREELKKWHLYSDSEYGGSSSA 60

Query: 61  SLEITESGNGMNGIFSGNLSLDLSEGSKWNISRSGFCGMRSKKFDGFIDLDSYDTIAMKL 120
           SLE  + GNG+ G+FSGNLSLD++EGSKWNISRSGFCGMRSKKFDGFIDLD+YDTIA+KL
Sbjct: 61  SLEFMDEGNGLKGVFSGNLSLDVAEGSKWNISRSGFCGMRSKKFDGFIDLDAYDTIALKL 120

Query: 121 KGDGRCYISTIYTENWVNSPGQQEDNSWQSFVFVPKDNWYIAKV 164
           KGDGR YISTIYTENWVNSPGQ EDNSWQ+FVFVPKDNWYIA++
Sbjct: 121 KGDGRSYISTIYTENWVNSPGQMEDNSWQAFVFVPKDNWYIARI 164

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225442028|ref|XP_002268906.1| PREDICTED: probable complex I intermediate-associated protein 30-like isoform 1 [Vitis vinifera]

 Score =  298 bits (764), Expect = 4e-79,   Method: Compositional matrix adjust.
 Identities = 141/166 (84%), Positives = 155/166 (93%), Gaps = 2/166 (1%)

Query: 1   MSRFRGLWQASLNATKRALTWNLEELMPPSERYIFNFNSKEELKKWHLYSDSEYGGLSSA 60
           MSRFR LWQASLNAT++ALTWN+E  +PPSERYIFNFNSKEELKKWHLYSDSEYGG+SSA
Sbjct: 1   MSRFRSLWQASLNATRKALTWNVENWIPPSERYIFNFNSKEELKKWHLYSDSEYGGMSSA 60

Query: 61  SLEITESGNGMNG--IFSGNLSLDLSEGSKWNISRSGFCGMRSKKFDGFIDLDSYDTIAM 118
           SLEI ++GNG++G  IFSGNLSLDL EGSKWNI R GFCGMRSKKFDGFIDL+SYDTIA+
Sbjct: 61  SLEIMDAGNGLSGTGIFSGNLSLDLIEGSKWNIRRGGFCGMRSKKFDGFIDLESYDTIAL 120

Query: 119 KLKGDGRCYISTIYTENWVNSPGQQEDNSWQSFVFVPKDNWYIAKV 164
           K+KGDGRCYISTIYTENWVNSP QQEDNSWQ+FVFVPKDNWYI K+
Sbjct: 121 KVKGDGRCYISTIYTENWVNSPAQQEDNSWQAFVFVPKDNWYITKI 166

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297844682|ref|XP_002890222.1| hypothetical protein ARALYDRAFT_471939 [Arabidopsis lyrata subsp. lyrata] gi|297336064|gb|EFH66481.1| hypothetical protein ARALYDRAFT_471939 [Arabidopsis lyrata subsp. lyrata]

 Score =  286 bits (732), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 135/166 (81%), Positives = 152/166 (91%), Gaps = 2/166 (1%)

Query: 1   MSRFRGLWQASLNATKRALTWNLEELMPPSERYIFNFNSKEELKKWHLYSDSEYGGLSSA 60
           MSRFR L QAS+NATK+ALTWN+EE +PP+E++IF FNSKE+LKKWHLYSDSEYGGLSSA
Sbjct: 1   MSRFRSLLQASVNATKKALTWNVEEWVPPAEKHIFKFNSKEDLKKWHLYSDSEYGGLSSA 60

Query: 61  SLEITESGNGMN--GIFSGNLSLDLSEGSKWNISRSGFCGMRSKKFDGFIDLDSYDTIAM 118
           SLEI + G+G +  GIFSGNLSLDLSEGSKWNISRSGFCGMRSKKFDGFIDLD YD IA+
Sbjct: 61  SLEIPDKGDGSDCTGIFSGNLSLDLSEGSKWNISRSGFCGMRSKKFDGFIDLDGYDAIAL 120

Query: 119 KLKGDGRCYISTIYTENWVNSPGQQEDNSWQSFVFVPKDNWYIAKV 164
           +L+GDGRCYISTIYTENWVNSPGQ EDNSWQ+FVF PKD+WY AK+
Sbjct: 121 RLRGDGRCYISTIYTENWVNSPGQSEDNSWQAFVFAPKDSWYTAKI 166

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|222619192|gb|EEE55324.1| hypothetical protein OsJ_03324 [Oryza sativa Japonica Group]

 Score =  285 bits (728), Expect = 7e-75,   Method: Compositional matrix adjust.
 Identities = 131/168 (77%), Positives = 151/168 (89%), Gaps = 4/168 (2%)

Query: 1   MSRFRGLWQASLNATKRALTWNLEELMPPSERYIFNFNSKEELKKWHLYSDSEYGGLSSA 60
           MSR R LWQAS+NAT+RA+ WN E+L+PPSE+YIFNFNSK+ELK+WHLYSDSEYGGLSSA
Sbjct: 63  MSRLRALWQASVNATRRAIVWNSEDLIPPSEKYIFNFNSKDELKRWHLYSDSEYGGLSSA 122

Query: 61  SLEITESGNGMN----GIFSGNLSLDLSEGSKWNISRSGFCGMRSKKFDGFIDLDSYDTI 116
           SLEIT+ G G +    G+FSGNLSLD+SEGS W I RSGFCGMRSKKF+GFIDLD+YDTI
Sbjct: 123 SLEITDGGAGGDTSSTGLFSGNLSLDMSEGSTWKIRRSGFCGMRSKKFNGFIDLDAYDTI 182

Query: 117 AMKLKGDGRCYISTIYTENWVNSPGQQEDNSWQSFVFVPKDNWYIAKV 164
           AMKL+GDGRCYISTIYTENWVNSPGQQEDNSWQ+FV++P+D W I K+
Sbjct: 183 AMKLRGDGRCYISTIYTENWVNSPGQQEDNSWQAFVYLPQDRWQIMKI 230

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|238478513|ref|NP_001154347.1| putative complex I intermediate-associated protein 30 [Arabidopsis thaliana] gi|332191456|gb|AEE29577.1| putative complex I intermediate-associated protein 30 [Arabidopsis thaliana]

 Score =  283 bits (725), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 132/167 (79%), Positives = 152/167 (91%), Gaps = 2/167 (1%)

Query: 1   MSRFRGLWQASLNATKRALTWNLEELMPPSERYIFNFNSKEELKKWHLYSDSEYGGLSSA 60
           MSRFR L QAS+NATK+ALTWN+EE +PP+E++IF F+SKE+LKKWHLYSDSEYGGLSSA
Sbjct: 1   MSRFRSLLQASVNATKKALTWNVEEWVPPAEKHIFKFHSKEDLKKWHLYSDSEYGGLSSA 60

Query: 61  SLEITESGNGMN--GIFSGNLSLDLSEGSKWNISRSGFCGMRSKKFDGFIDLDSYDTIAM 118
           SLEI + G+G +  G+FSGNLS+DLSEGSKWNISRSGFCGMRSKKFDGFIDLD YD IA+
Sbjct: 61  SLEIPDKGDGSDCTGVFSGNLSVDLSEGSKWNISRSGFCGMRSKKFDGFIDLDGYDAIAL 120

Query: 119 KLKGDGRCYISTIYTENWVNSPGQQEDNSWQSFVFVPKDNWYIAKVS 165
           +++GDGRCYISTIYTENWVNSPGQ EDNSWQ+FVF PKD+WY AK S
Sbjct: 121 RIRGDGRCYISTIYTENWVNSPGQSEDNSWQAFVFAPKDSWYTAKAS 167

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|115439685|ref|NP_001044122.1| Os01g0727400 [Oryza sativa Japonica Group] gi|57899102|dbj|BAD86921.1| auxin-induced-related / indole-3-acetic acid induced-related-like [Oryza sativa Japonica Group] gi|57899739|dbj|BAD87459.1| auxin-induced-related / indole-3-acetic acid induced-related-like [Oryza sativa Japonica Group] gi|113533653|dbj|BAF06036.1| Os01g0727400 [Oryza sativa Japonica Group] gi|215686775|dbj|BAG89625.1| unnamed protein product [Oryza sativa Japonica Group] gi|218188988|gb|EEC71415.1| hypothetical protein OsI_03593 [Oryza sativa Indica Group]

 Score =  283 bits (724), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 131/168 (77%), Positives = 151/168 (89%), Gaps = 4/168 (2%)

Query: 1   MSRFRGLWQASLNATKRALTWNLEELMPPSERYIFNFNSKEELKKWHLYSDSEYGGLSSA 60
           MSR R LWQAS+NAT+RA+ WN E+L+PPSE+YIFNFNSK+ELK+WHLYSDSEYGGLSSA
Sbjct: 1   MSRLRALWQASVNATRRAIVWNSEDLIPPSEKYIFNFNSKDELKRWHLYSDSEYGGLSSA 60

Query: 61  SLEITESGNGMN----GIFSGNLSLDLSEGSKWNISRSGFCGMRSKKFDGFIDLDSYDTI 116
           SLEIT+ G G +    G+FSGNLSLD+SEGS W I RSGFCGMRSKKF+GFIDLD+YDTI
Sbjct: 61  SLEITDGGAGGDTSSTGLFSGNLSLDMSEGSTWKIRRSGFCGMRSKKFNGFIDLDAYDTI 120

Query: 117 AMKLKGDGRCYISTIYTENWVNSPGQQEDNSWQSFVFVPKDNWYIAKV 164
           AMKL+GDGRCYISTIYTENWVNSPGQQEDNSWQ+FV++P+D W I K+
Sbjct: 121 AMKLRGDGRCYISTIYTENWVNSPGQQEDNSWQAFVYLPQDRWQIMKI 168

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|42562121|ref|NP_173178.3| putative complex I intermediate-associated protein 30 [Arabidopsis thaliana] gi|209572597|sp|Q9LQI7.2|CIA30_ARATH RecName: Full=Probable complex I intermediate-associated protein 30 gi|117168231|gb|ABK32198.1| At1g17350 [Arabidopsis thaliana] gi|332191455|gb|AEE29576.1| putative complex I intermediate-associated protein 30 [Arabidopsis thaliana]

 Score =  282 bits (722), Expect = 3e-74,   Method: Compositional matrix adjust.
 Identities = 131/166 (78%), Positives = 152/166 (91%), Gaps = 2/166 (1%)

Query: 1   MSRFRGLWQASLNATKRALTWNLEELMPPSERYIFNFNSKEELKKWHLYSDSEYGGLSSA 60
           MSRFR L QAS+NATK+ALTWN+EE +PP+E++IF F+SKE+LKKWHLYSDSEYGGLSSA
Sbjct: 1   MSRFRSLLQASVNATKKALTWNVEEWVPPAEKHIFKFHSKEDLKKWHLYSDSEYGGLSSA 60

Query: 61  SLEITESGNGMN--GIFSGNLSLDLSEGSKWNISRSGFCGMRSKKFDGFIDLDSYDTIAM 118
           SLEI + G+G +  G+FSGNLS+DLSEGSKWNISRSGFCGMRSKKFDGFIDLD YD IA+
Sbjct: 61  SLEIPDKGDGSDCTGVFSGNLSVDLSEGSKWNISRSGFCGMRSKKFDGFIDLDGYDAIAL 120

Query: 119 KLKGDGRCYISTIYTENWVNSPGQQEDNSWQSFVFVPKDNWYIAKV 164
           +++GDGRCYISTIYTENWVNSPGQ EDNSWQ+FVF PKD+WY AK+
Sbjct: 121 RIRGDGRCYISTIYTENWVNSPGQSEDNSWQAFVFAPKDSWYTAKI 166

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	176
TAIR|locus:2029100	236	AT1G17350 "AT1G17350" [Arabido	0.937	0.699	0.790	9.6e-73
TAIR|locus:2193937	228	AT1G72420 "AT1G72420" [Arabido	0.931	0.719	0.795	6.7e-72
FB|FBgn0039689	296	CG7598 [Drosophila melanogaste	0.755	0.449	0.292	7.1e-11
UNIPROTKB|F1SSV5	263	NDUFAF1 "Uncharacterized prote	0.721	0.482	0.289	2.2e-10
UNIPROTKB|E1BZH1	303	NDUFAF1 "Uncharacterized prote	0.75	0.435	0.263	1.3e-09
UNIPROTKB|E1BAZ2	328	NDUFAF1 "Uncharacterized prote	0.704	0.378	0.291	3.4e-09
ASPGD|ASPL0000075999	393	AN4740 [Emericella nidulans (t	0.727	0.325	0.265	4e-09
UNIPROTKB|H0YL22	261	NDUFAF1 "Complex I intermediat	0.806	0.544	0.256	6.5e-09
CGD|CAL0004155	227	orf19.3353 [Candida albicans (	0.653	0.506	0.341	1.9e-08
UNIPROTKB|Q5A9Q4	227	CIA30 "Potential mitochondrial	0.653	0.506	0.341	1.9e-08

TAIR|locus:2029100 AT1G17350 "AT1G17350" [Arabidopsis thaliana (taxid:3702)]

 Score = 735 (263.8 bits), Expect = 9.6e-73, P = 9.6e-73
 Identities = 132/167 (79%), Positives = 152/167 (91%)

Query:     1 MSRFRGLWQASLNATKRALTWNLEELMPPSERYIFNFNSKEELKKWHLYSDSEYGGLSSA 60
             MSRFR L QAS+NATK+ALTWN+EE +PP+E++IF F+SKE+LKKWHLYSDSEYGGLSSA
Sbjct:     1 MSRFRSLLQASVNATKKALTWNVEEWVPPAEKHIFKFHSKEDLKKWHLYSDSEYGGLSSA 60

Query:    61 SLEITESGNGMN--GIFSGNLSLDLSEGSKWNISRSGFCGMRSKKFDGFIDLDSYDTIAM 118
             SLEI + G+G +  G+FSGNLS+DLSEGSKWNISRSGFCGMRSKKFDGFIDLD YD IA+
Sbjct:    61 SLEIPDKGDGSDCTGVFSGNLSVDLSEGSKWNISRSGFCGMRSKKFDGFIDLDGYDAIAL 120

Query:   119 KLKGDGRCYISTIYTENWVNSPGQQEDNSWQSFVFVPKDNWYIAKVS 165
             +++GDGRCYISTIYTENWVNSPGQ EDNSWQ+FVF PKD+WY AK S
Sbjct:   121 RIRGDGRCYISTIYTENWVNSPGQSEDNSWQAFVFAPKDSWYTAKAS 167

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM;IDA

GO:0008150 "biological_process" evidence=ND

GO:0009736 "cytokinin mediated signaling pathway" evidence=RCA

TAIR|locus:2193937 AT1G72420 "AT1G72420" [Arabidopsis thaliana (taxid:3702)]

 Score = 727 (261.0 bits), Expect = 6.7e-72, P = 6.7e-72
 Identities = 132/166 (79%), Positives = 146/166 (87%)

Query:     1 MSRFRGLWQASLNATKRALTWNLEELMPPSERYIFNFNSKEELKKWHLYSDSEYGGLSSA 60
             MSRFR LWQAS+NATK+ALTW LEE +PP E+ IF FNSKE+LK WHLYSDSEYGGLSSA
Sbjct:     1 MSRFRSLWQASVNATKKALTWELEEWVPPVEKCIFKFNSKEDLKTWHLYSDSEYGGLSSA 60

Query:    61 SLEITESGN--GMNGIFSGNLSLDLSEGSKWNISRSGFCGMRSKKFDGFIDLDSYDTIAM 118
             SLEI + GN    NG+FSGNLS D+ EGSKWNI+RSGFCGMRSKKFDGFIDL+ YD+IA+
Sbjct:    61 SLEIKDGGNRSDCNGVFSGNLSTDMREGSKWNINRSGFCGMRSKKFDGFIDLEGYDSIAL 120

Query:   119 KLKGDGRCYISTIYTENWVNSPGQQEDNSWQSFVFVPKDNWYIAKV 164
             +LKGDGRCYISTIYTENWVNSPGQ EDNSWQ+FVF PK NWY AKV
Sbjct:   121 RLKGDGRCYISTIYTENWVNSPGQAEDNSWQAFVFAPKGNWYTAKV 166

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

FB|FBgn0039689 CG7598 [Drosophila melanogaster (taxid:7227)]

 Score = 155 (59.6 bits), Expect = 7.1e-11, P = 7.1e-11
 Identities = 45/154 (29%), Positives = 83/154 (53%)

Query:    29 PSER-YIFNFNSKEELKKWHLYSDSEYG-GLSSASLEITESGNGMNGIFSGNLSLDLSEG 86
             P E   +F+F + + L KW + +D+++G G S+A+LE++ +G G+   F G ++ D ++ 
Sbjct:    85 PGETDVVFDFKAPDVLDKWTVTTDADHGEGKSTATLELSAAGAGL---FHGQVNSDHTKD 141

Query:    87 SKWNISRSGFCGMRSK------KFDGFIDLDSYDTIAMKLKGDGRCYISTIYTENWVNSP 140
                 I R+G+  +R+K      K +   D   Y+ + MK++GDGR Y+  ++TE + +  
Sbjct:   142 GI--IKRTGYANIRTKRVRKSFKRETTYDWTQYNMLVMKVRGDGRSYLINLHTEGYFDLM 199

Query:   141 GQQEDNSWQSFVFVPKD--NWYIAKV--SSFLLN 170
                  N    +V   +   +W IAK+  S F L+
Sbjct:   200 W----NDIYHYVLYTRGGPHWQIAKIPFSKFFLS 229

GO:0005747 "mitochondrial respiratory chain complex I" evidence=ISS

GO:0017004 "cytochrome complex assembly" evidence=NAS

GO:0006119 "oxidative phosphorylation" evidence=ISS

UNIPROTKB|F1SSV5 NDUFAF1 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 149 (57.5 bits), Expect = 2.2e-10, P = 2.2e-10
 Identities = 40/138 (28%), Positives = 73/138 (52%)

Query:    23 LEELMPPSERYIFNFNSKEELKKWHLYSDSEYGGLSSASLEITESGNGMNGIFSGNLSLD 82
             L E++    + ++ F  KE+L KW + SD   GG S A L++ +  N  + +  G LS +
Sbjct:   119 LHEVLLEQAKVVWQFRGKEDLDKWIVTSDKTIGGRSEAFLKMGK--NNQSALLYGTLSSE 176

Query:    83 LSEGSKWNISRSGFCGMRSKKFDGFIDLD-SYD-----TIAMKLKGDGRCYISTIYTE-N 135
               +  +    RSG+C M SK   G  ++  SYD     T+ ++++GDGR ++  I  + +
Sbjct:   177 APQDGE--SGRSGYCAMISKVPRGPFEIKKSYDWSQFNTLYLRVRGDGRPWMVNIREDTD 234

Query:   136 WVNSPGQQEDNSWQSFVF 153
              +    Q++D+ +  F+F
Sbjct:   235 IIQRSNQRKDHMYSYFMF 252

GO:0005739 "mitochondrion" evidence=IEA

UNIPROTKB|E1BZH1 NDUFAF1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 144 (55.7 bits), Expect = 1.3e-09, P = 1.3e-09
 Identities = 39/148 (26%), Positives = 76/148 (51%)

Query:    32 RYIFNFNSKEELKKWHLYSDSEYGGLSSASLEITESGNGMNGIFSGNLSLDLSEGSKWNI 91
             + ++ F ++E+L KW + SD E GG S   L++  +  G   +  G L+ ++    +   
Sbjct:   101 KVMWEFRTQEDLNKWVISSDVEIGGKSEVYLKLGRNNQG--AMLYGILNTEVPRDGETKY 158

Query:    92 SRSGFCGMRSKKFDG------FIDLDSYDTIAMKLKGDGRCYISTIYTENWVNSPGQQED 145
             S  G+C MR+K   G      + D  +++ + ++++GDGR ++  IYT+ + +    Q+D
Sbjct:   159 S--GYCSMRAKPAVGSFARKKYYDWSNFNCLYLRVRGDGRAWMVNIYTDPYFS---HQKD 213

Query:   146 NSWQSFVFVPKDN-WYIAKV--SSFLLN 170
             + +  F+F      W   K+  S F L+
Sbjct:   214 DLYNYFMFTRGGPYWEEIKIPFSKFFLS 241

GO:0005739 "mitochondrion" evidence=IEA

UNIPROTKB|E1BAZ2 NDUFAF1 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 141 (54.7 bits), Expect = 3.4e-09, P = 3.4e-09
 Identities = 40/137 (29%), Positives = 71/137 (51%)

Query:    23 LEELMPPSERYIFNFNSKEELKKWHLYSDSEYGGLSSASLEITESGNGMNGIFSGNLSLD 82
             L E++    + ++ F SKE+L KW + SD   GG S   L++ +  N  + +  G LS +
Sbjct:   114 LHEVLMEQAKVVWQFRSKEDLDKWTVTSDKVIGGRSEVFLKMGK--NNQSALLYGTLSSE 171

Query:    83 LSEGSKWNISRSGFCGMRSKKFDGFIDLD-SYD-----TIAMKLKGDGRCYISTIYTENW 136
               +  +    RSG+C M SK   G  ++  SYD     T+ ++++GDGR ++  I  +  
Sbjct:   172 APQDGE--SGRSGYCAMVSKIPRGPFEMKRSYDWSQFNTLYLRVRGDGRPWMVNIREDTD 229

Query:   137 VNSPGQQEDNSWQSFVF 153
             +    Q++D  +  F+F
Sbjct:   230 II---QKKDQMYSYFMF 243

GO:0005739 "mitochondrion" evidence=IEA

ASPGD|ASPL0000075999 AN4740 [Emericella nidulans (taxid:162425)]

 Score = 142 (55.0 bits), Expect = 4.0e-09, P = 4.0e-09
 Identities = 38/143 (26%), Positives = 67/143 (46%)

Query:     6 GLWQASLNATKRA--LTWNLEELMPPSERY-IFNFNSKEELKKWHLYSDSEYGGLSSASL 62
             G ++ S     R   + WN E L  P++ Y + +F  +  +      +D   GG S+ASL
Sbjct:    14 GFFKRSAEELSRLSRIAWNTEALSTPTKPYTLLDFEDEASVASCKTMADRAVGGFSTASL 73

Query:    63 EITESGNGMN----GIFSGNLSLDLSEGSKWNISRSGFCGMRSKKFDGFI------DLDS 112
             +   + +  N      F G +S  L   + W + R+G+   R++    ++      DLD 
Sbjct:    74 DYIPADSSTNTPAHARFHGTISTKLP--NNWRVERTGYAAFRNQDRGFWLFGRLYWDLDP 131

Query:   113 YDTIAMKLKGDGRCYISTIYTEN 135
             Y  +A+++K DGR Y   +YT +
Sbjct:   132 YTYLALRVKSDGRRYTHRLYTRH 154

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

UNIPROTKB|H0YL22 NDUFAF1 "Complex I intermediate-associated protein 30, mitochondrial" [Homo sapiens (taxid:9606)]

 Score = 136 (52.9 bits), Expect = 6.5e-09, P = 6.5e-09
 Identities = 40/156 (25%), Positives = 76/156 (48%)

Query:    23 LEELMPPSERYIFNFNSKEELKKWHLYSDSEYGGLSSASLEITESGNGMNGIFSGNLSLD 82
             L E++    + ++ F  KE+L KW + SD   GG S   L++ +  N  + +  G LS +
Sbjct:   113 LHEVLLEQAKVVWQFRGKEDLDKWTVTSDKTIGGRSEVFLKMGK--NNQSALLYGTLSSE 170

Query:    83 LSEGSKWNISRSGFCGMRSK----KFDGFIDLD--SYDTIAMKLKGDGRCYISTIYTENW 136
               +  +   +RSG+C M S+     F+  +  D   ++T+ ++++GDGR ++  I  +  
Sbjct:   171 APQDGE--STRSGYCAMISRIPRGAFERKMSYDWSQFNTLYLRVRGDGRPWMVNIKED-- 226

Query:   137 VNSPGQQEDNSWQSFVFVPKDNWYIAKVSSFLLNLI 172
               +   Q  N   S+    +   Y  +V + LL L+
Sbjct:   227 --TDFFQRTNQMYSYFMFTRGGPYWQEVKATLLKLV 260

GO:0005737 "cytoplasm" evidence=IDA

CGD|CAL0004155 orf19.3353 [Candida albicans (taxid:5476)]

 Score = 130 (50.8 bits), Expect = 1.9e-08, P = 1.9e-08
 Identities = 44/129 (34%), Positives = 65/129 (50%)

Query:    12 LNATKRALTWNLEELMPPSERYIFNFNSKEE--LKKWHLYSDSEYGGLSSASLEITESGN 69
             LNATK        EL  P +  + NF  + E  L +    SD E GG S+ + +I    +
Sbjct:     8 LNATKSIFA-KQAELTRPVQS-VLNFKREPEKSLDQVLTRSDQELGGYSTVNFDIDPKEH 65

Query:    70 GMNGIFSGNLSLDLSEGSKWNISRSGFCGMRSKK------F-DGFIDLDSYDTIAMKLKG 122
                G F GNLSLDL + +   ++RSG+   R+K       F D F D  +Y ++ +++KG
Sbjct:    66 C--GHFYGNLSLDLPKDNP-QVTRSGYAMFRTKDQNQSWLFGDSFWDWTNYSSLVLRVKG 122

Query:   123 DGRCYISTI 131
             D R Y+  I
Sbjct:   123 DRRKYLVNI 131

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q5A9Q4 CIA30 "Potential mitochondrial Complex I assembly chaperone" [Candida albicans SC5314 (taxid:237561)]

 Score = 130 (50.8 bits), Expect = 1.9e-08, P = 1.9e-08
 Identities = 44/129 (34%), Positives = 65/129 (50%)

Query:    12 LNATKRALTWNLEELMPPSERYIFNFNSKEE--LKKWHLYSDSEYGGLSSASLEITESGN 69
             LNATK        EL  P +  + NF  + E  L +    SD E GG S+ + +I    +
Sbjct:     8 LNATKSIFA-KQAELTRPVQS-VLNFKREPEKSLDQVLTRSDQELGGYSTVNFDIDPKEH 65

Query:    70 GMNGIFSGNLSLDLSEGSKWNISRSGFCGMRSKK------F-DGFIDLDSYDTIAMKLKG 122
                G F GNLSLDL + +   ++RSG+   R+K       F D F D  +Y ++ +++KG
Sbjct:    66 C--GHFYGNLSLDLPKDNP-QVTRSGYAMFRTKDQNQSWLFGDSFWDWTNYSSLVLRVKG 122

Query:   123 DGRCYISTI 131
             D R Y+  I
Sbjct:   123 DRRKYLVNI 131

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9LQI7	CIA30_ARATH	No assigned EC number	0.7891	0.9318	0.7224	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: estExt_Genewise1_v1.C_LG_X5562 hypothetical protein (226 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	176
pfam08547	156	pfam08547, CIA30, Complex I intermediate-associate	1e-33

>gnl|CDD|219896 pfam08547, CIA30, Complex I intermediate-associated protein 30 (CIA30)

 Score =  116 bits (292), Expect = 1e-33
 Identities = 38/130 (29%), Positives = 63/130 (48%), Gaps = 18/130 (13%)

Query: 35  FNFNSKEELKKWHLYSDSEYGGLSSASLEITESGNGMNGIFSGNLSLDLSEGSKWNISRS 94
           F+F   E+L  W   +D+  GG+S++SL ++  G     +FSGNLSL+         +  
Sbjct: 1   FDFTQPEDLDDWTAVNDTVMGGVSTSSLTLSPDGTA---VFSGNLSLE---------NNG 48

Query: 95  GFCGMRSKKFDGFIDLDSYDTIAMKLKGDGRCYISTIYTENWVNSPGQQEDNSWQSFVFV 154
           GF  +R+K     +DL  Y  + +++KGDGR Y   + TE+  +        S+Q+    
Sbjct: 49  GFASVRTKNRKPPLDLSGYTGLELRVKGDGRTYKFNLKTEDEFDGL------SYQADFDT 102

Query: 155 PKDNWYIAKV 164
               W   K+
Sbjct: 103 KPGEWQTVKI 112

This protein is associated with mitochondrial Complex I intermediate-associated protein 30 (CIA30) in human and mouse. The family is also present in Schizosaccharomyces pombe which does not contain the NADH dehydrogenase component of complex I, or many of the other essential subunits. This means it is possible that this family of protein may not be directly involved in oxidative phosphorylation. Length = 156

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	176
PF08547	157	CIA30: Complex I intermediate-associated protein 3	100.0
KOG2435	323	consensus Uncharacterized conserved protein [Funct	100.0
PF03425	178	CBM_11: Carbohydrate binding domain (family 11); I	98.71

>PF08547 CIA30: Complex I intermediate-associated protein 30 (CIA30); InterPro: IPR013857 Mitochondrial complex I intermediate-associated protein 30 (CIA30) is present in human and mouse, and also in Schizosaccharomyces pombe (Fission yeast) which does not contain the NADH dehydrogenase component of complex I, or many of the other essential subunits

Probab=100.00  E-value=3.9e-36  Score=234.24  Aligned_cols=124  Identities=33%  Similarity=0.631  Sum_probs=112.8

Q ss_pred             EecCCccccCCeEEeccceeeceeEEEEEEecCCCcceEEEEEEEecccCCCCcccccCceeeEEeeCCCCCCCCCCCCC
Q 030479           35 FNFNSKEELKKWHLYSDSEYGGLSSASLEITESGNGMNGIFSGNLSLDLSEGSKWNISRSGFCGMRSKKFDGFIDLDSYD  114 (176)
Q Consensus        35 ~~F~~~~~~~~W~~~~D~vmGG~S~~~l~~~~~~~~~~~~F~G~ls~~~p~~~~~~ln~gGFAsvrt~~~~~~~dls~y~  114 (176)
                      |+|+++++++.|++++|.||||.|+|++.+.+++  ..++|+|+||++         |+||||++|+......+||+.|+
T Consensus         1 f~F~~~~~~~~W~~~~D~vmGG~S~~~~~~~~~~--~~~~F~G~ls~~---------~~~GFa~~r~~~~~~~~dls~y~   69 (157)
T PF08547_consen    1 FDFNSPQDLENWRVVSDTVMGGVSTASLEFSPED--GSAVFSGNLSTE---------NNGGFASVRTPSFPSPLDLSGYD   69 (157)
T ss_pred             CcCCCChhhCCeEEEcceEeCCeEEEEEEEECCC--CEEEEEEEEecC---------CCCceEEEEEccCCCcCCCCCCc
Confidence            6899999999999999999999999999997532  379999999998         89999999994345789999999


Q ss_pred             eEEEEEeecCcEEEEEEEeCCCcCCCCCCCCCceEEEEEeCCCCEEEEEEeCCCceecccC
Q 030479          115 TIAMKLKGDGRCYISTIYTENWVNSPGQQEDNSWQSFVFVPKDNWYIAKVSSFLLNLIFSE  175 (176)
Q Consensus       115 gl~lrvrGDGr~Y~l~l~t~~~~~~~~~~~~~~~q~~~~t~~g~W~tV~iPFs~F~~~~~~  175 (176)
                      ||+|+||||||+|+++|++++..      +...|++.+.+++++|++|+|||++|.|++|+
T Consensus        70 ~l~l~vrgdGr~Y~~~l~~~~~~------~~~~y~~~f~t~~~~w~~v~iPFs~F~~~~rG  124 (157)
T PF08547_consen   70 GLELRVRGDGRTYKVNLRTDNDE------PSDSYQARFQTPPGEWQTVRIPFSDFVPTFRG  124 (157)
T ss_pred             EEEEEEEcCCceEEEEEEeCCCC------CCceEEEEEeccCCccEEEEEEHHHCceeeCC
Confidence            99999999999999999999762      45789999988899999999999999999986

This means it is possible that it is not directly involved in oxidative phosphorylation [, ].

>KOG2435 consensus Uncharacterized conserved protein [Function unknown]

Probab=100.00  E-value=1.2e-32  Score=227.20  Aligned_cols=151  Identities=34%  Similarity=0.637  Sum_probs=136.4

Q ss_pred             hhcccccccCC------CCccEEEecCCccccCCeEEeccceeeceeEEEEEEecCCCcceEEEEEEEecccCCCCcccc
Q 030479           18 ALTWNLEELMP------PSERYIFNFNSKEELKKWHLYSDSEYGGLSSASLEITESGNGMNGIFSGNLSLDLSEGSKWNI   91 (176)
Q Consensus        18 ~~~~~~~~l~p------~~~~~L~~F~~~~~~~~W~~~~D~vmGG~S~~~l~~~~~~~~~~~~F~G~ls~~~p~~~~~~l   91 (176)
                      .+.|+.++-.|      ++..++|+|+.+++++.|++.+|...||.|+|.|++.+.+  +.++|+|++|++.|+++  .+
T Consensus        99 kl~w~~eE~~pllevr~~eakvvf~F~~kEdLdkWtv~sDsd~gG~StasLe~sd~G--~~alf~G~~ss~~~kdg--~i  174 (323)
T KOG2435|consen   99 KLHWRGEEGHPLLEVRLEEAKVVFQFRGKEDLDKWTVTSDSDIGGRSTASLEMSDNG--QSALFYGTLSSEAPKDG--EI  174 (323)
T ss_pred             HHHhccccCccceeecCCcceEEEEccChhhcceeEeecccccCCeeeEEEEecCCC--cceeeccccccccccCc--ce
Confidence            45578887777      7899999999999999999999999999999999997764  47999999999999998  57


Q ss_pred             cCceeeEEeeCC---C--CCCCCCCCCCeEEEEEeecCcEEEEEEEeCCCcCCCCCCCCCceEEEEEeCCC-CEEEEEEe
Q 030479           92 SRSGFCGMRSKK---F--DGFIDLDSYDTIAMKLKGDGRCYISTIYTENWVNSPGQQEDNSWQSFVFVPKD-NWYIAKVS  165 (176)
Q Consensus        92 n~gGFAsvrt~~---~--~~~~dls~y~gl~lrvrGDGr~Y~l~l~t~~~~~~~~~~~~~~~q~~~~t~~g-~W~tV~iP  165 (176)
                      +|+|||++|+++   |  ...+|++.|+.|.||||||||.|+++|+++.++|   +.+.++|+|++||++| .||.++||
T Consensus       175 ~RsGyc~Mrs~~RkaF~rk~~~dw~qfn~L~LrvRGDGRsy~inihte~~~d---q~wndsys~flft~gGp~wq~~KIP  251 (323)
T KOG2435|consen  175 TRSGYCAMRSRPRKAFERKMSYDWSQFNTLYLRVRGDGRSYMINIHTETDFD---QRWNDSYSYFLFTRGGPYWQEVKIP  251 (323)
T ss_pred             eeeeeeeeeccchhhhcceecccccccceEEEEEecCCceEEEEecCccchh---hhcccceeeEEecCCCCceeEEecc
Confidence            999999999954   4  2357888899999999999999999999999987   5789999999999977 99999999


Q ss_pred             CCCceecccC
Q 030479          166 SFLLNLIFSE  175 (176)
Q Consensus       166 Fs~F~~~~~~  175 (176)
                      |+.|-+++++
T Consensus       252 fSKff~t~kG  261 (323)
T KOG2435|consen  252 FSKFFFTNKG  261 (323)
T ss_pred             hhhheecccc
Confidence            9999999876

>PF03425 CBM_11: Carbohydrate binding domain (family 11); InterPro: IPR005087 A carbohydrate-binding module (CBM) is defined as a contiguous amino acid sequence within a carbohydrate-active enzyme with a discreet fold having carbohydrate-binding activity

Probab=98.71  E-value=2.6e-07  Score=73.32  Aligned_cols=116  Identities=19%  Similarity=0.255  Sum_probs=58.8

Q ss_pred             CccEEEecCCccc----cCCeEEeccceeeceeEEEEEEecCCCcceEEEEEEEecccCCCCcccccCceeeEEeeCCCC
Q 030479           30 SERYIFNFNSKEE----LKKWHLYSDSEYGGLSSASLEITESGNGMNGIFSGNLSLDLSEGSKWNISRSGFCGMRSKKFD  105 (176)
Q Consensus        30 ~~~~L~~F~~~~~----~~~W~~~~D~vmGG~S~~~l~~~~~~~~~~~~F~G~ls~~~p~~~~~~ln~gGFAsvrt~~~~  105 (176)
                      .+.+|.+|.+...    ...|...+|...++.++..-   +.+ +..+.++.. ..          ..++++++...+  
T Consensus         3 ~~~~IDDFE~~~~~~~l~~~w~s~~~~~~~~~~~~~~---~~~-~~~l~~~y~-~~----------~~~~~~~v~~~l--   65 (178)
T PF03425_consen    3 PPLLIDDFEDYDGDNALQGAWYSYNDDGPGLSLTISD---PDG-GKALAISYD-GG----------GSGGWAGVTKDL--   65 (178)
T ss_dssp             SEEEEE-SSSS----------EEEEETT-EEEEEEEE----SS-SEEEEEEEE-------------SS-EEEEE-EE---
T ss_pred             ccceeEcccCCCCccceeeeeeccCCCCceeEEEeeC---CCC-CcEEEEEEe-cC----------CCCceEEEecCC--
Confidence            4578889987532    24699888876665444333   222 335666665 22          478888886654  


Q ss_pred             CCCCCCCCCeEEEEEeecC--cEEEEEEEeCCCcCCCCCCCCCceEEEEEeCCCCEEEEEEeCCCcee
Q 030479          106 GFIDLDSYDTIAMKLKGDG--RCYISTIYTENWVNSPGQQEDNSWQSFVFVPKDNWYIAKVSSFLLNL  171 (176)
Q Consensus       106 ~~~dls~y~gl~lrvrGDG--r~Y~l~l~t~~~~~~~~~~~~~~~q~~~~t~~g~W~tV~iPFs~F~~  171 (176)
                      ..-|++.|+||.|.+|+||  ++..|.|.....        .+.|.+. ++...+|++|+|||++|++
T Consensus        66 ~~~DwS~~~gl~Fw~k~dgs~~~l~vqi~d~~~--------~e~~~~~-~~~~~~W~~V~IPF~~f~~  124 (178)
T PF03425_consen   66 DPGDWSGYGGLSFWIKGDGSGNKLRVQIKDGGD--------YEYWEAS-FTDSSTWKTVEIPFSDFTQ  124 (178)
T ss_dssp             S----TT--EEEEEEEE------EEEEEEEE-E--------EEEEEEE-E---SS-EEEEEEGGG-EE
T ss_pred             CcCCcccCCcEEEEEEcCCCCcEEEEEEecCCc--------ceeeEee-cCCCCcCEEEEEEHHHccc
Confidence            4569999999999999765  556666655531        1345543 4444559999999999986

A few exceptions are CBMs in cellulosomal scaffolding proteins and rare instances of independent putative CBMs. The requirement of CBMs existing as modules within larger enzymes sets this class of carbohydrate-binding protein apart from other non-catalytic sugar binding proteins such as lectins and sugar transport proteins. CBMs were previously classified as cellulose-binding domains (CBDs) based on the initial discovery of several modules that bound cellulose [, ]. However, additional modules in carbohydrate-active enzymes are continually being found that bind carbohydrates other than cellulose yet otherwise meet the CBM criteria, hence the need to reclassify these polypeptides using more inclusive terminology. Previous classification of cellulose-binding domains were based on amino acid similarity. Groupings of CBDs were called "Types" and numbered with roman numerals (e.g. Type I or Type II CBDs). In keeping with the glycoside hydrolase classification, these groupings are now called families and numbered with Arabic numerals. Families 1 to 13 are the same as Types I to XIII. For a detailed review on the structure and binding modes of CBMs see []. This entry represents CBM11 from CAZY which binds both beta-1,4-glucan and beta-1,3-1,4-mixed linked glucans.; GO: 0008810 cellulase activity, 0030245 cellulose catabolic process; PDB: 1V0A_A.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	176
1v0a_A	178	Endoglucanase H; carbohydrate binding module, cell	99.84
1wmx_A	205	COG3291: FOG: PKD repeat; CBM30, carbohydrate bind	94.16
1wky_A	464	Endo-beta-1,4-mannanase; TIM barrel, catalytic dom	86.67
3f95_A	193	Beta-glucosidase; beta-sandwich, hydrolase; 1.80A	83.27

>1v0a_A Endoglucanase H; carbohydrate binding module, cellulosome, cellulose degradation, hydrolase, glycosidase; 1.98A {Clostridium thermocellum} SCOP: b.18.1.30

Probab=99.84  E-value=6.7e-21  Score=150.43  Aligned_cols=116  Identities=15%  Similarity=0.219  Sum_probs=86.2

Q ss_pred             CCccEEEecCCccccCCeEEeccceeeceeEEEEEEecCCCcceEEEEEEEecccCCCCccccc-CceeeEEeeCCCCCC
Q 030479           29 PSERYIFNFNSKEELKKWHLYSDSEYGGLSSASLEITESGNGMNGIFSGNLSLDLSEGSKWNIS-RSGFCGMRSKKFDGF  107 (176)
Q Consensus        29 ~~~~~L~~F~~~~~~~~W~~~~D~vmGG~S~~~l~~~~~~~~~~~~F~G~ls~~~p~~~~~~ln-~gGFAsvrt~~~~~~  107 (176)
                      ..+.+|++|..+.   .|..++|.   |.|.+ +.+.+..    ..+.++||++         | +|||+|||..+  ++
T Consensus         5 ~~~~~i~df~~~~---~W~~v~Ds---~~s~s-~~~~~g~----~~~~l~VS~~---------N~nGGF~svr~n~--~~   62 (178)
T 1v0a_A            5 VGEKMLDDFEGVL---NWGSYSGE---GAKVS-TKIVSGK----TGNGMEVSYT---------GTTDGYWGTVYSL--PD   62 (178)
T ss_dssp             BSEEEEECSSSSC---CCEEEEET---TCEEE-EEEEECS----SSEEEEEEEE---------CCSSCEEEEEEEC--SC
T ss_pred             ccCcceecCCCCC---ceEEEcCC---CcEEE-EEEecCc----eeeEEEEEEe---------cCCCCEEEEEcCC--CC
Confidence            3566888886554   89999994   33333 5554442    2344499999         8 99999999753  68


Q ss_pred             CCCCCCCeEEEEEee---cCcEEEEEEEeCCCcCCCCCCCCCceEEEEEeCCCCEEEEEEeCCCce
Q 030479          108 IDLDSYDTIAMKLKG---DGRCYISTIYTENWVNSPGQQEDNSWQSFVFVPKDNWYIAKVSSFLLN  170 (176)
Q Consensus       108 ~dls~y~gl~lrvrG---DGr~Y~l~l~t~~~~~~~~~~~~~~~q~~~~t~~g~W~tV~iPFs~F~  170 (176)
                      .|++.|+||+|+|+|   ||++|+|.||+....-   -.+...|++ .|++...|++|+|||++|.
T Consensus        63 ~d~s~~~GI~l~vkG~~~nG~~y~~~LR~~~~~~---~~~~~~y~~-sF~t~~~W~~IeIPFs~F~  124 (178)
T 1v0a_A           63 GDWSKWLKISFDIKSVDGSANEIRFMIAEKSING---VGDGEHWVY-SITPDSSWKTIEIPFSSFR  124 (178)
T ss_dssp             CCCTTCCEEEEEEEEC---CCCEEEEEEEECTTS---SSEEEEEEE-EECCCSSCEEEEEEGGGCE
T ss_pred             CCHhHCCcEEEEEEcCCCCCCEEEEEEeeCCCCC---CCCCeeEEE-EecCCCcCEEEEEEHHHhc
Confidence            999999999999999   6999999999975420   001134554 4566689999999999999

>1wmx_A COG3291: FOG: PKD repeat; CBM30, carbohydrate binding module family30, CELJ, sugar BIN protein; 2.00A {Clostridium thermocellum} SCOP: b.18.1.24 PDB: 1wzx_A 2c24_A

Probab=94.16  E-value=0.68  Score=36.58  Aligned_cols=74  Identities=15%  Similarity=0.155  Sum_probs=51.4

Q ss_pred             cCceeeEEeeCCC-CCCCCCCCCC---eEEEEEeec--CcEEEEEEEeCCCcCCCCCCCCCceEEEE----E-eCCCCEE
Q 030479           92 SRSGFCGMRSKKF-DGFIDLDSYD---TIAMKLKGD--GRCYISTIYTENWVNSPGQQEDNSWQSFV----F-VPKDNWY  160 (176)
Q Consensus        92 n~gGFAsvrt~~~-~~~~dls~y~---gl~lrvrGD--Gr~Y~l~l~t~~~~~~~~~~~~~~~q~~~----~-t~~g~W~  160 (176)
                      ++.|+.++-..+- -...||+.|-   +|++-|||.  |..+.|-+.+...-.    .....-|...    + +.+-+||
T Consensus        59 ~~~~w~~~~~~l~~w~~~DLs~y~~nG~leF~IKG~~GGE~~~ig~~D~~~e~----~~g~~~~~~~~~~~yi~VttEwQ  134 (205)
T 1wmx_A           59 VQSGWWISLLTLRGWNTHDLSQYVENGYLEFDIKGKEGGEDFVIGFRDKVYER----VYGLEIDVTTVISNYVTVTTDWQ  134 (205)
T ss_dssp             CCSSCEEEEEESSTTSCBCCGGGTTTCEEEEEEEESSSCCCCEEEEEECCTTC----TTCSSCEEEEEGGGTCCCCSSCE
T ss_pred             ccCceeEEEEeccCcceeehhhhhcCCeEEEEEecccCceeEEEEEecccccc----cCCceeEEEeechheEEeccccE
Confidence            6888887654431 2467888874   899999985  789999999873211    1223444433    2 2356999


Q ss_pred             EEEEeCCCc
Q 030479          161 IAKVSSFLL  169 (176)
Q Consensus       161 tV~iPFs~F  169 (176)
                      -|.||+.+|
T Consensus       135 HvsiPLkdF  143 (205)
T 1wmx_A          135 HVKIPLRDL  143 (205)
T ss_dssp             EEEEEGGGT
T ss_pred             EEEeeHHHh
Confidence            999999999

>1wky_A Endo-beta-1,4-mannanase; TIM barrel, catalytic domain, CBM, hydrolase; 1.65A {Bacillus SP} SCOP: b.18.1.31 c.1.8.3

Probab=86.67  E-value=12  Score=32.44  Aligned_cols=112  Identities=15%  Similarity=0.126  Sum_probs=69.2

Q ss_pred             CCCccEEEecCCccccCCeEEeccceeeceeEEEEEEecCCCcceEEEEEEEecccCCCCcccccCceeeEEeeCCCCCC
Q 030479           28 PPSERYIFNFNSKEELKKWHLYSDSEYGGLSSASLEITESGNGMNGIFSGNLSLDLSEGSKWNISRSGFCGMRSKKFDGF  107 (176)
Q Consensus        28 p~~~~~L~~F~~~~~~~~W~~~~D~vmGG~S~~~l~~~~~~~~~~~~F~G~ls~~~p~~~~~~ln~gGFAsvrt~~~~~~  107 (176)
                      ++.+.++++|.+..  +.|..-+-  ++|...+.-. ..+  | .....+.+.+.         ++.+|- +...   ..
T Consensus       311 ~~~~~~~~df~~~~--~~w~~~~~--~~g~~~~~~~-~~~--g-~~sl~~~~~~~---------~~~~~~-~~~~---~~  369 (464)
T 1wky_A          311 RTSPTTLYDFEEST--QGWTGSSL--SRGPWTVTEW-SSK--G-NHSLKADIQMS---------SNSQHY-LHVI---QN  369 (464)
T ss_dssp             ---CEEEECCSSSC--TTEEEESC--SEEEEEESSC-CSS--T-TCEEEEEEEEC---------TTCEEE-EEEE---EE
T ss_pred             CCCCcccccccCCC--cccccccc--cCCceeeccc-ccc--C-ceeEeeeeeec---------CCCceE-EEEe---ec
Confidence            35667899999763  78996442  3443222111 112  2 34456666665         566663 5543   46


Q ss_pred             CCCCCCCeEEEEEeec-------CcEEEEEEEeCCCcCCCCCCCCCceEEE--EEeCCCCEEEEEEeCCCc
Q 030479          108 IDLDSYDTIAMKLKGD-------GRCYISTIYTENWVNSPGQQEDNSWQSF--VFVPKDNWYIAKVSSFLL  169 (176)
Q Consensus       108 ~dls~y~gl~lrvrGD-------Gr~Y~l~l~t~~~~~~~~~~~~~~~q~~--~~t~~g~W~tV~iPFs~F  169 (176)
                      .|+++++.|.++|+-.       |=+=+|-++|.+.+         .|+--  ....+++|.++.|+|+.-
T Consensus       370 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~k~~~~~---------~w~~~~~~~i~~~~~~~l~~~l~~~  431 (464)
T 1wky_A          370 RSLQQNSRIQATVKHANWGSVGNGMTARLYVKTGHGY---------TWYSGSFVPINGSSGTTLSLDLSNV  431 (464)
T ss_dssp             ECCTTCCEEEEEEEEC-------CEEEEEEEEETTTT---------EEEECCCEEECSSSCEEEEEECTTC
T ss_pred             cCCCCcceEEEEEEeccCCCCCCCeeEEEEEEeCCCc---------eEecCCceEecCCCceEEEEEcccC
Confidence            8999999999999832       45677777887654         34431  223567999999999854

>3f95_A Beta-glucosidase; beta-sandwich, hydrolase; 1.80A {Pseudoalteromonas SP}

Probab=83.27  E-value=5.5  Score=31.11  Aligned_cols=51  Identities=10%  Similarity=0.185  Sum_probs=31.1

Q ss_pred             CCCCCCCC--eEEEEEeecC---cEEEEEEEeCCCcCCCCCCCCCceEEEE-E------eCCCCEEEEEEeCCC
Q 030479          107 FIDLDSYD--TIAMKLKGDG---RCYISTIYTENWVNSPGQQEDNSWQSFV-F------VPKDNWYIAKVSSFL  168 (176)
Q Consensus       107 ~~dls~y~--gl~lrvrGDG---r~Y~l~l~t~~~~~~~~~~~~~~~q~~~-~------t~~g~W~tV~iPFs~  168 (176)
                      +.| +.|.  .|.|++|-|-   ..-.|.+.+....          -...+ .      .+.|+|++|.||++-
T Consensus        78 ~~D-s~y~~~aL~fd~rvd~ap~~~v~L~m~Cg~~~----------C~~~vdit~~L~~~~~g~W~tv~IpL~C  140 (193)
T 3f95_A           78 PLD-SKFSTGYLELKMRIDKAPEQGANLQVMCSESN----------CLRDIDFSSFSQLMADKSWHTLAIPLHC  140 (193)
T ss_dssp             ECC-GGGTTCEEEEEEEEEECCTTCEEEEEEECSSC----------EEEEEEGGGTHHHHTTCCCEEEEEESCC
T ss_pred             CcC-ChhhCceEEEEEEeecCCCCcEEEEEecCCCC----------ccceeehhHhhhhccCCCCEEEEEeCcc
Confidence            456 5553  5888888653   3566677765320          11111 1      156899999999975

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	176
d1v0aa1	167	Endoglucanase H {Clostridium thermocellum [TaxId:	99.66
d1wmxa_	173	Endoglucanase CelJ {Clostridium thermocellum [TaxI	95.88

>d1v0aa1 b.18.1.30 (A:4-170) Endoglucanase H {Clostridium thermocellum [TaxId: 1515]}

class: All beta proteins
fold: Galactose-binding domain-like
superfamily: Galactose-binding domain-like
family: CBM11
domain: Endoglucanase H
species: Clostridium thermocellum [TaxId: 1515]

Probab=99.66  E-value=1.3e-15  Score=116.46  Aligned_cols=119  Identities=13%  Similarity=0.172  Sum_probs=82.2

Q ss_pred             CccEEEecCCccccCCeEEeccceeeceeEEEEEEecCCCcceEEEEEEEecccCCCCcccccCceeeEEeeCCCCCCCC
Q 030479           30 SERYIFNFNSKEELKKWHLYSDSEYGGLSSASLEITESGNGMNGIFSGNLSLDLSEGSKWNISRSGFCGMRSKKFDGFID  109 (176)
Q Consensus        30 ~~~~L~~F~~~~~~~~W~~~~D~vmGG~S~~~l~~~~~~~~~~~~F~G~ls~~~p~~~~~~ln~gGFAsvrt~~~~~~~d  109 (176)
                      .+++|.||.+.   ..|..    ++|+.|++.+.+.....+..++  ...+..         ++|||..+|..   .+.|
T Consensus         3 ge~vidDFe~~---~~W~~----~~~~~~~~~~~~~~~~~~~~~~--l~~~~~---------~~g~~~~~~~~---~~~D   61 (167)
T d1v0aa1           3 GEKMLDDFEGV---LNWGS----YSGEGAKVSTKIVSGKTGNGME--VSYTGT---------TDGYWGTVYSL---PDGD   61 (167)
T ss_dssp             SEEEEECSSSS---CCCEE----EEETTCEEEEEEEECSSSEEEE--EEEECC---------SSCEEEEEEEC---SCCC
T ss_pred             ccEEEEcCcCC---cccee----cCCCCceEEEEecccCCCceEE--EEEeee---------cCCcEEEEEec---CcCC
Confidence            57899999764   56955    5667788888776554433344  444444         56666665543   4689


Q ss_pred             CCCCCeEEEEEe---ecCcEEEEEEEeCCCcCCCCCCCCCceEEEEEeCCCCEEEEEEeCCCceecc
Q 030479          110 LDSYDTIAMKLK---GDGRCYISTIYTENWVNSPGQQEDNSWQSFVFVPKDNWYIAKVSSFLLNLIF  173 (176)
Q Consensus       110 ls~y~gl~lrvr---GDGr~Y~l~l~t~~~~~~~~~~~~~~~q~~~~t~~g~W~tV~iPFs~F~~~~  173 (176)
                      |+.|+||+|+||   |++++|.|+|++......   .....|. ..|+.+++|++|+|||++|++..
T Consensus        62 ~s~~~gi~~~vkg~~G~~~~~~~~l~d~~~~~~---~~~~~~~-~~f~~~~~W~~V~IPF~~F~~~~  124 (167)
T d1v0aa1          62 WSKWLKISFDIKSVDGSANEIRFMIAEKSINGV---GDGEHWV-YSITPDSSWKTIEIPFSSFRRRL  124 (167)
T ss_dssp             CTTCCEEEEEEEEC---CCCEEEEEEEECTTSS---SEEEEEE-EEECCCSSCEEEEEEGGGCEECC
T ss_pred             CccCCeEEEEEECCCCCceEEEEEEEcCCcCCC---CcccEEE-EEEecCCccEEEEEEHHHccccc
Confidence            999999999999   778999999998754211   0111233 34577889999999999999864

>d1wmxa_ b.18.1.24 (A:) Endoglucanase CelJ {Clostridium thermocellum [TaxId: 1515]}

class: All beta proteins
fold: Galactose-binding domain-like
superfamily: Galactose-binding domain-like
family: Family 30 carbohydrate binding module, CBM30 (PKD repeat)
domain: Endoglucanase CelJ
species: Clostridium thermocellum [TaxId: 1515]

Probab=95.88  E-value=0.078  Score=39.09  Aligned_cols=77  Identities=13%  Similarity=0.115  Sum_probs=46.7

Q ss_pred             cCceeeEEeeCCCCCCCCCCCCCe---EEEEEeec--CcEEEEEEEeCCCcCCCCCCCCCceEEEE----EeCCCCEEEE
Q 030479           92 SRSGFCGMRSKKFDGFIDLDSYDT---IAMKLKGD--GRCYISTIYTENWVNSPGQQEDNSWQSFV----FVPKDNWYIA  162 (176)
Q Consensus        92 n~gGFAsvrt~~~~~~~dls~y~g---l~lrvrGD--Gr~Y~l~l~t~~~~~~~~~~~~~~~q~~~----~t~~g~W~tV  162 (176)
                      +.++|..--...-....||+.|..   |++.+|+.  +..+.+.+.+.....+- ..  ..-....    .+..++||++
T Consensus        53 ~~~w~g~gl~~~~~~~~DlS~~~a~G~L~FdiK~~s~~~~~~igf~~~~~~~~~-~~--~~~~~~~~~~~~~vt~eW~~~  129 (173)
T d1wmxa_          53 QSGWWISLLTLRGWNTHDLSQYVENGYLEFDIKGKEGGEDFVIGFRDKVYERVY-GL--EIDVTTVISNYVTVTTDWQHV  129 (173)
T ss_dssp             CSSCEEEEEESSTTSCBCCGGGTTTCEEEEEEEESSSCCCCEEEEEECCTTCTT-CS--SCEEEEEGGGTCCCCSSCEEE
T ss_pred             CCCeeEEEEEccCCccccchhhhcCCcEEEEEEccCCCcceEEEEEeccccCCC-ce--EEecccCCcccceecCceEEE
Confidence            355554433221134689999954   99999976  46788888876543210 00  1111111    2247899999


Q ss_pred             EEeCCCcee
Q 030479          163 KVSSFLLNL  171 (176)
Q Consensus       163 ~iPFs~F~~  171 (176)
                      .||+++|..
T Consensus       130 ~ipl~~l~~  138 (173)
T d1wmxa_         130 KIPLRDLMK  138 (173)
T ss_dssp             EEEGGGTSC
T ss_pred             EEEhHHhhc
Confidence            999999964