Citrus Sinensis ID: 030496

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170------
Protein Sequence
MGMSHPSITTPNVQYATHQVGAGHAMAPAAYPYPDPYYRSIFAPYDAQPYPPQPYGGQPMVHLQLMGIQQAGVPLPTDAVEEPVFVNAKQYHGILRRRQSRAKAESENKVLKSRKPYLHESRHLHALRRARGCGGRFLNSKKNENQQKGMASDDKSQSNLNLNSDKNEIASSDRQS
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEccHHHHHHHHHHHHHHHHHHHHcHHcccccccHHHHHHHHHHHcccccccccccHHHHHHHHccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccccccccccccccccccccccccEEcccccccccccccccccccccccccccccccccccccccccEEEcHHHHHHHHHHHHHHHHHHHHcccHHcccccHHHHHHHHHHHccccccccEccccHHHHHcccccccccccccccccccccccccccccc
Coil and Loop (DISEMBL)
mgmshpsittpnvqyathqvgaghamapaaypypdpyyrsifapydaqpyppqpyggqpmvHLQLMGIqqagvplptdaveepvfvnAKQYHGILRRRQSRAKAESENKVlksrkpylhesRHLHALRRArgcggrflnskknenqqkgmasddksqsnlnlnsdkneiassdrqs
Flexible Loop (DISEMBL)
mgmshpsiTTPNVQYATHQVGAGHAMAPAAYPYPDPYYRSIFAPYDAQPYPPQPYGGQPMVHLQLMGIQQAGVPLPTDAVEEPVFVNAKqyhgilrrrqsrakaesenkvlksrkpylhesrhlHALRRARGCGGRFLNSKknenqqkgmasddksqsnlnlnsdkneiassdrqs
Low Complexity Region (SEG)
MGMSHPSITTPNVQYATHQVGAGHamapaaypypdpyyRSIFapydaqpyppqpyggqpMVHLQLMGIQQAGVPLPTDAVEEPVFVNAKQYHGILRRRQSRAKAESENKVLKSRKPYLHESRHLHALRRARGCGGRFLNSKKNENQQKGMASDDKSQSNLNLNSDKNEIASSDRQS
Disordered region (IsUnstruct)
*************QYATHQVGAGHAMAPAAYPYPDPYYRSIFAPYDAQPYPPQPYGGQPMVHLQLMGIQQAGVPLPTDAVEEPVFVNAKQYHGIL*********************************************************************************
Disordered Region (DISOPRED)
************************AMAPAAYPYPDPYYRSIFAP************************************EEPVFVNAKQYHGILRRRQS****************************************************************************
Disordered Region (DISEMBL)
**********PNVQYATHQVGAGHAMAPAAYPYPDPYYRSIFAPYDAQPYPPQPYGGQPMVHLQLMGIQQAGVPLPTDAVEEPVFVNAKQYHG*****************LKSRKPYLHESRHLHALRRARGCGGRFLNSKKN****************LNLNSDKN*********
Disordered Region (DISPRO)
*********TPNVQYATHQVGAGHAMAPAAYPYPDPYYRSIFAPYDAQPYPPQPYGGQPMVHLQLMGIQQAGVPLPTDAVEEPVFVNAKQYHGILRRRQSRAKAESENKVLKSRKPYLHESRHLHALRR***********************************************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MGMSHPSITTPNVQYATHQVGAGHAMAPAAYPYPDPYYRSIFAPYDAQPYPPQPYGGQPMVHLQLMGIQQAGVPLPTDAVEEPVFVNAKQYHGILRRRQSRAKAESENKVLKSRKPYLHESRHLHALRRARGCGGRFLNSKKNENQQKGMASDDKSQSNLNLNSDKNEIASSDRQS
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	176	2.2.26 [Sep-21-2011]
Q84JP1	190	Nuclear transcription fac	yes	no	0.789	0.731	0.677	2e-53
Q8VY64	198	Nuclear transcription fac	no	no	0.801	0.712	0.602	1e-45
Q945M9	303	Nuclear transcription fac	no	no	0.829	0.481	0.458	5e-30
Q9SYH4	308	Nuclear transcription fac	no	no	0.522	0.298	0.623	2e-28
Q93ZH2	340	Nuclear transcription fac	no	no	0.767	0.397	0.450	3e-28
Q9LXV5	272	Nuclear transcription fac	no	no	0.795	0.514	0.435	6e-27
Q9LNP6	328	Nuclear transcription fac	no	no	0.585	0.314	0.521	2e-26
Q9LVJ7	308	Nuclear transcription fac	no	no	0.556	0.318	0.57	1e-25
Q8LFU0	269	Nuclear transcription fac	no	no	0.801	0.524	0.378	1e-20
Q54S29	517	Nuclear transcription fac	yes	no	0.346	0.117	0.704	3e-19

>sp|Q84JP1|NFYA7_ARATH Nuclear transcription factor Y subunit A-7 OS=Arabidopsis thaliana GN=NFYA7 PE=2 SV=1

 Score =  207 bits (528), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 103/152 (67%), Positives = 122/152 (80%), Gaps = 13/152 (8%)

Query: 21  GAGHAMAPAAYPYPDPYYRSIFAPYDAQPYPPQPYGGQPMVHLQLMGIQQAGVPLPTDAV 80
           G  ++MAP  YPYPDPYYRSIFAP      PPQPY G   VHLQLMG+QQ GVPLP+DAV
Sbjct: 48  GTTNSMAPGQYPYPDPYYRSIFAP------PPQPYTG---VHLQLMGVQQQGVPLPSDAV 98

Query: 81  EEPVFVNAKQYHGILRRRQSRAKAESENKVLKSRKPYLHESRHLHALRRARGCGGRFLNS 140
           EEPVFVNAKQYHGILRRRQSRA+ ES+NKV+KSRKPYLHESRHLHA+RR RGCGGRFLN+
Sbjct: 99  EEPVFVNAKQYHGILRRRQSRARLESQNKVIKSRKPYLHESRHLHAIRRPRGCGGRFLNA 158

Query: 141 KKNENQQKGMASDDKSQSNLNLNSDKNEIASS 172
           KK +   +  + ++KS    NL++ K+ +A+S
Sbjct: 159 KKEDEHHEDSSHEEKS----NLSAGKSAMAAS 186

Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.
Arabidopsis thaliana (taxid: 3702)

>sp|Q8VY64|NFYA4_ARATH Nuclear transcription factor Y subunit A-4 OS=Arabidopsis thaliana GN=NFYA4 PE=2 SV=1

 Score =  182 bits (462), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 91/151 (60%), Positives = 116/151 (76%), Gaps = 10/151 (6%)

Query: 26  MAPAAYPYPDPYYRSIFAPYDAQPYPPQPYGGQPMVHLQLMGIQQAGVPLPTDAVEEPVF 85
           MA   YPYPDPYYRS+FA    Q Y P PY   P V LQLMG+QQ GVPL  DAVEEPVF
Sbjct: 48  MAHGLYPYPDPYYRSVFA---QQAYLPHPY---PGVQLQLMGMQQPGVPLQCDAVEEPVF 101

Query: 86  VNAKQYHGILRRRQSRAKAESENKVLKSRKPYLHESRHLHALRRARGCGGRFLNSKK--- 142
           VNAKQYHGILRRRQSRAK E+ N+ +K++KPY+HESRHLHA+RR RGCGGRFLN+KK   
Sbjct: 102 VNAKQYHGILRRRQSRAKLEARNRAIKAKKPYMHESRHLHAIRRPRGCGGRFLNAKKENG 161

Query: 143 -NENQQKGMASDDKSQSNLNLNSDKNEIASS 172
            ++ +++  + ++ S+++ +L S+K  +A+S
Sbjct: 162 DHKEEEEATSDENTSEASSSLRSEKLAMATS 192

Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.

Arabidopsis thaliana (taxid: 3702)

>sp|Q945M9|NFYA9_ARATH Nuclear transcription factor Y subunit A-9 OS=Arabidopsis thaliana GN=NFYA9 PE=2 SV=1

 Score =  130 bits (327), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 77/168 (45%), Positives = 96/168 (57%), Gaps = 22/168 (13%)

Query: 11  PNVQYATHQVGAGHAMAPAAYPYPDPYYRSIFAPYDAQPYPPQPYGGQPMVHLQLMGIQQ 70
           P+ Q   H VG       ++ PY DPYY  +   Y   P    PYGG P   +       
Sbjct: 110 PHPQLVGHTVGWA-----SSNPYQDPYYAGVMGAYGHHPLGFVPYGGMPHSRM------- 157

Query: 71  AGVPLPTDAVEEPVFVNAKQYHGILRRRQSRAKAESENKVLKSRKPYLHESRHLHALRRA 130
              PLP +  +EPVFVNAKQY  ILRRRQ+RAKAE E K++KSRKPYLHESRH HA+RR 
Sbjct: 158 ---PLPPEMAQEPVFVNAKQYQAILRRRQARAKAELEKKLIKSRKPYLHESRHQHAMRRP 214

Query: 131 RGCGGRFLNSKKNENQQKGMASDDKS-----QSNLNLNSDKNEIASSD 173
           RG GGRF  +KK   +     +++KS     QS  + NSD+ E  + D
Sbjct: 215 RGTGGRF--AKKTNTEASKRKAEEKSNGHVTQSPSSSNSDQGEAWNGD 260

Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SYH4|NFYA5_ARATH Nuclear transcription factor Y subunit A-5 OS=Arabidopsis thaliana GN=NFYA5 PE=2 SV=1

 Score =  125 bits (313), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 58/93 (62%), Positives = 72/93 (77%), Gaps = 1/93 (1%)

Query: 62  HLQLMGIQQAGVPLPTDAVE-EPVFVNAKQYHGILRRRQSRAKAESENKVLKSRKPYLHE 120
           HL++MG+  + VPLP    E EP+FVNAKQYH ILRRR+ RAK E++NK++K RKPYLHE
Sbjct: 157 HLEMMGLVSSRVPLPHHIQENEPIFVNAKQYHAILRRRKHRAKLEAQNKLIKCRKPYLHE 216

Query: 121 SRHLHALRRARGCGGRFLNSKKNENQQKGMASD 153
           SRHLHAL+RARG GGRFLN+KK +     + S 
Sbjct: 217 SRHLHALKRARGSGGRFLNTKKLQESSNSLCSS 249

Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters (By similarity). Involved in the blue light (BL) and abscisic acid (ABA) signaling pathways.

Arabidopsis thaliana (taxid: 3702)

>sp|Q93ZH2|NFYA3_ARATH Nuclear transcription factor Y subunit A-3 OS=Arabidopsis thaliana GN=NFYA3 PE=2 SV=2

 Score =  124 bits (311), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 68/151 (45%), Positives = 95/151 (62%), Gaps = 16/151 (10%)

Query: 11  PNVQYATHQVGAGHAMAPAAYPYPDPYYRSIFAPYDAQPYPPQPYGGQPMVHLQLMGIQQ 70
           PN+ +A        A A  ++ Y DP+Y  + A      Y PQ     P  + Q++ +  
Sbjct: 122 PNIHFAP-------AQANFSFHYADPHYGGLLAA----TYLPQA----PTCNPQMVSMIP 166

Query: 71  AGVPLPTDAVE-EPVFVNAKQYHGILRRRQSRAKAESENKVLKSRKPYLHESRHLHALRR 129
             VPLP +  E +PVFVNAKQYH I+RRRQ RAK E++NK++++RKPYLHESRH+HAL+R
Sbjct: 167 GRVPLPAELTETDPVFVNAKQYHAIMRRRQQRAKLEAQNKLIRARKPYLHESRHVHALKR 226

Query: 130 ARGCGGRFLNSKKNENQQKGMASDDKSQSNL 160
            RG GGRFLN+KK   + +  A+ ++ Q  L
Sbjct: 227 PRGSGGRFLNTKKLLQESEQAAAREQEQDKL 257

Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LXV5|NFYA1_ARATH Nuclear transcription factor Y subunit A-1 OS=Arabidopsis thaliana GN=NFYA1 PE=2 SV=1

 Score =  120 bits (300), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 68/156 (43%), Positives = 87/156 (55%), Gaps = 16/156 (10%)

Query: 23  GHAMAPAAYPYPDPYYRSIFAPYDAQPYPPQPYGGQPMVHLQLMGIQQAGVPLPTDAVEE 82
           GH +A    PY DPYY  +   Y  Q    +PY          +G+ +    LP D  +E
Sbjct: 123 GHYIACVPNPYQDPYYGGLMGAYGHQQLGFRPY----------LGMPRERTALPLDMAQE 172

Query: 83  PVFVNAKQYHGILRRRQSRAKAESENKVLKSRKPYLHESRHLHALRRARGCGGRFLNSKK 142
           PV+VNAKQY GILRRR++RAKAE E KV++ RKPYLHESRH HA+RRAR  GGRF    +
Sbjct: 173 PVYVNAKQYEGILRRRKARAKAELERKVIRDRKPYLHESRHKHAMRRARASGGRFAKKSE 232

Query: 143 NENQQKGMASDDKSQSNLN------LNSDKNEIASS 172
            E  +     D +  S  N      + +D NE  +S
Sbjct: 233 VEAGEDAGGRDRERGSATNSSGSEQVETDSNETLNS 268

Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LNP6|NFYA8_ARATH Nuclear transcription factor Y subunit A-8 OS=Arabidopsis thaliana GN=NFYA8 PE=2 SV=2

 Score =  118 bits (295), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 61/117 (52%), Positives = 77/117 (65%), Gaps = 14/117 (11%)

Query: 27  APAAYPYPDPYYRSIFAPYDAQPYPPQPYGGQPMVHLQLMGIQQAGVPLPTDAVE-EPVF 85
           A  ++ Y DP++  +        Y PQ     P         Q   VPLP D +E EPVF
Sbjct: 129 ANFSFHYADPHFGGLMPA----AYLPQATIWNP---------QMTRVPLPFDLIENEPVF 175

Query: 86  VNAKQYHGILRRRQSRAKAESENKVLKSRKPYLHESRHLHALRRARGCGGRFLNSKK 142
           VNAKQ+H I+RRRQ RAK E++NK++K+RKPYLHESRH+HAL+R RG GGRFLN+KK
Sbjct: 176 VNAKQFHAIMRRRQQRAKLEAQNKLIKARKPYLHESRHVHALKRPRGSGGRFLNTKK 232

Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LVJ7|NFYA6_ARATH Nuclear transcription factor Y subunit A-6 OS=Arabidopsis thaliana GN=NFYA6 PE=2 SV=1

 Score =  116 bits (290), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 57/100 (57%), Positives = 74/100 (74%), Gaps = 2/100 (2%)

Query: 54  PYGGQPMV-HLQLMGIQQAGVPLPTDAVE-EPVFVNAKQYHGILRRRQSRAKAESENKVL 111
           PY  Q  V H Q+ G+  + +PLP +  E EP+FVNAKQY  ILRRR+ RAK E++NK++
Sbjct: 141 PYASQHTVQHPQIRGLVPSRMPLPHNIPENEPIFVNAKQYQAILRRRERRAKLEAQNKLI 200

Query: 112 KSRKPYLHESRHLHALRRARGCGGRFLNSKKNENQQKGMA 151
           K RKPYLHESRHLHAL+R RG GGRFLN+KK++     ++
Sbjct: 201 KVRKPYLHESRHLHALKRVRGSGGRFLNTKKHQESNSSLS 240

Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8LFU0|NFYAA_ARATH Nuclear transcription factor Y subunit A-10 OS=Arabidopsis thaliana GN=NFYA10 PE=2 SV=2

 Score = 99.0 bits (245), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 62/164 (37%), Positives = 92/164 (56%), Gaps = 23/164 (14%)

Query: 13  VQYATHQVGAGHAMAPAAYPYPDPYYRSIFAPYDAQPYPPQPYGGQPMVHLQLMGIQQAG 72
           +Q A  + G    M    +P+ + YY  + A      Y  Q   G+ M+ L+ M  ++ G
Sbjct: 82  MQSACFEFGFAQPMMYTKHPHVEQYYGVVSA------YGSQRSSGRVMIPLK-METEEDG 134

Query: 73  VPLPTDAVEEPVFVNAKQYHGILRRRQSRAKAESENKVLKSRKPYLHESRHLHALRRARG 132
                      ++VN+KQYHGI+RRRQSRAKAE   K+ + RKPY+H SRHLHA+RR RG
Sbjct: 135 T----------IYVNSKQYHGIIRRRQSRAKAE---KLSRCRKPYMHHSRHLHAMRRPRG 181

Query: 133 CGGRFLNSKKNENQQKGMASDDKSQSNLNLNSDKNEIASSDRQS 176
            GGRFLN+K  +  ++   S+ +S    +    +NE  +S R++
Sbjct: 182 SGGRFLNTKTADAAKQSKPSNSQSSEVFH---PENETINSSREA 222

Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.

Arabidopsis thaliana (taxid: 3702)

>sp|Q54S29|NFYA_DICDI Nuclear transcription factor Y subunit alpha OS=Dictyostelium discoideum GN=nfyA PE=3 SV=1

 Score = 94.7 bits (234), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 43/61 (70%), Positives = 52/61 (85%)

Query: 78  DAVEEPVFVNAKQYHGILRRRQSRAKAESENKVLKSRKPYLHESRHLHALRRARGCGGRF 137
           + VEEP++VNAKQY+ IL+RR +RAK ESENK+ K+RK Y HESRH HA+RR RGCGGRF
Sbjct: 225 EIVEEPLYVNAKQYNRILKRRAARAKLESENKLPKTRKAYQHESRHQHAIRRQRGCGGRF 284

Query: 138 L 138
           L
Sbjct: 285 L 285

Component of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.

Dictyostelium discoideum (taxid: 44689)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	176
224113655	208	predicted protein [Populus trichocarpa]	0.994	0.841	0.835	6e-81
225444037	208	PREDICTED: nuclear transcription factor	0.994	0.841	0.846	9e-81
255638418	206	unknown [Glycine max]	0.994	0.849	0.769	6e-73
255564393	213	Nuclear transcription factor Y subunit A	0.994	0.821	0.788	7e-73
147784447	1611	hypothetical protein VITISV_039357 [Viti	0.852	0.093	0.858	2e-72
356555881	205	PREDICTED: nuclear transcription factor	0.994	0.853	0.823	4e-72
356533053	219	PREDICTED: nuclear transcription factor	0.994	0.799	0.812	1e-71
356533051	204	PREDICTED: nuclear transcription factor	0.994	0.857	0.812	1e-71
449490734	201	PREDICTED: nuclear transcription factor	0.937	0.820	0.848	1e-69
449433674	202	PREDICTED: nuclear transcription factor	0.937	0.816	0.848	1e-69

>gi|224113655|ref|XP_002332527.1| predicted protein [Populus trichocarpa] gi|222832639|gb|EEE71116.1| predicted protein [Populus trichocarpa]

 Score =  305 bits (780), Expect = 6e-81,   Method: Compositional matrix adjust.
 Identities = 147/176 (83%), Positives = 160/176 (90%), Gaps = 1/176 (0%)

Query: 2   GMSHPSITTPNVQYATHQVGAGHAMAPAAYPYPDPYYRSIFAPYDAQPYPPQPYGGQPMV 61
            ++HP I+ PN QYAT Q+GAGHAMAPAAYPYPDPYYRSIFAP DAQPY PQPYG QPMV
Sbjct: 33  ALAHPGISPPNFQYATPQLGAGHAMAPAAYPYPDPYYRSIFAPCDAQPYAPQPYGAQPMV 92

Query: 62  HLQLMGIQQAGVPLPTDAVEEPVFVNAKQYHGILRRRQSRAKAESENKVLKSRKPYLHES 121
           HLQLMGIQQAGVPLP+DAVEEPVFVNAKQYHGILRRRQSRAKAESENK +KSRKPYLHES
Sbjct: 93  HLQLMGIQQAGVPLPSDAVEEPVFVNAKQYHGILRRRQSRAKAESENKAIKSRKPYLHES 152

Query: 122 RHLHALRRARGCGGRFLNSKKNENQQK-GMASDDKSQSNLNLNSDKNEIASSDRQS 176
           RH HAL+RARGCGGRFLNSKK ENQQ+ GMA  DKSQSN+NLN++KN+IAS D +S
Sbjct: 153 RHQHALKRARGCGGRFLNSKKKENQQQNGMAPGDKSQSNVNLNANKNDIASLDDKS 208

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225444037|ref|XP_002282043.1| PREDICTED: nuclear transcription factor Y subunit A-7 isoform 1 [Vitis vinifera] gi|297740816|emb|CBI30998.3| unnamed protein product [Vitis vinifera]

 Score =  304 bits (779), Expect = 9e-81,   Method: Compositional matrix adjust.
 Identities = 149/176 (84%), Positives = 158/176 (89%), Gaps = 1/176 (0%)

Query: 2   GMSHPSITTPNVQYATH-QVGAGHAMAPAAYPYPDPYYRSIFAPYDAQPYPPQPYGGQPM 60
           G SHP     N+ YAT  Q+GAGHAMA AAYPYPDPYYRSIFAPYDAQPYP Q Y GQPM
Sbjct: 33  GASHPGSAAANIPYATPPQLGAGHAMAQAAYPYPDPYYRSIFAPYDAQPYPAQHYSGQPM 92

Query: 61  VHLQLMGIQQAGVPLPTDAVEEPVFVNAKQYHGILRRRQSRAKAESENKVLKSRKPYLHE 120
           VHLQLMGIQQAGVPLP+DAVEEPVFVNAKQYHGILRRRQSRAKAESENKV+KSRKPYLHE
Sbjct: 93  VHLQLMGIQQAGVPLPSDAVEEPVFVNAKQYHGILRRRQSRAKAESENKVVKSRKPYLHE 152

Query: 121 SRHLHALRRARGCGGRFLNSKKNENQQKGMASDDKSQSNLNLNSDKNEIASSDRQS 176
           SRHLHALRRARGCGGRFLNSKKNE++Q  +AS DKSQSN+NLNSDKNE+ASSD  S
Sbjct: 153 SRHLHALRRARGCGGRFLNSKKNESEQNEVASGDKSQSNINLNSDKNELASSDSTS 208

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255638418|gb|ACU19519.1| unknown [Glycine max]

 Score =  278 bits (711), Expect = 6e-73,   Method: Compositional matrix adjust.
 Identities = 137/178 (76%), Positives = 150/178 (84%), Gaps = 3/178 (1%)

Query: 2   GMSHPSITTPNV--QYAT-HQVGAGHAMAPAAYPYPDPYYRSIFAPYDAQPYPPQPYGGQ 58
           G+S P I+T NV  QYA   Q+G GHAM P  YPYPDPYYRSIFAPYD QPYPPQ Y GQ
Sbjct: 29  GISDPGISTQNVNVQYAAPGQLGTGHAMVPHVYPYPDPYYRSIFAPYDTQPYPPQAYSGQ 88

Query: 59  PMVHLQLMGIQQAGVPLPTDAVEEPVFVNAKQYHGILRRRQSRAKAESENKVLKSRKPYL 118
           PMVHLQLMGIQQAGVPLPTDAVEEPVFVNAKQYHGILRRRQ RAKAESENK++++RKPYL
Sbjct: 89  PMVHLQLMGIQQAGVPLPTDAVEEPVFVNAKQYHGILRRRQYRAKAESENKIIRNRKPYL 148

Query: 119 HESRHLHALRRARGCGGRFLNSKKNENQQKGMASDDKSQSNLNLNSDKNEIASSDRQS 176
           HESRH HAL R RGCGGRFLNSKK +NQ   +AS DKSQSN+N+N +KN+  SSDR S
Sbjct: 149 HESRHKHALTRPRGCGGRFLNSKKAKNQNDDVASADKSQSNININFNKNDQTSSDRAS 206

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255564393|ref|XP_002523193.1| Nuclear transcription factor Y subunit A-4, putative [Ricinus communis] gi|223537600|gb|EEF39224.1| Nuclear transcription factor Y subunit A-4, putative [Ricinus communis]

 Score =  278 bits (710), Expect = 7e-73,   Method: Compositional matrix adjust.
 Identities = 142/180 (78%), Positives = 153/180 (85%), Gaps = 5/180 (2%)

Query: 2   GMSHPSITTPNVQYATHQ----VGAGHAMAPAAYPYPDPYYRSIFAPYDAQPYPPQPYGG 57
            M HP I+TPN  Y T +      A  A   AAYPYPDPYYRSIFAPYDAQPYPPQPYGG
Sbjct: 34  AMVHPGISTPNAHYTTSRQLGSGHAMAAGGAAAYPYPDPYYRSIFAPYDAQPYPPQPYGG 93

Query: 58  QPMVHLQLMGIQQAGVPLPTDAVEEPVFVNAKQYHGILRRRQSRAKAESENKVLKSRKPY 117
           QPMVHLQLMGIQQAGVPLP+D VEEPVFVNAKQYHGILRRRQSRAKAESENKV+KSRKPY
Sbjct: 94  QPMVHLQLMGIQQAGVPLPSDTVEEPVFVNAKQYHGILRRRQSRAKAESENKVIKSRKPY 153

Query: 118 LHESRHLHALRRARGCGGRFLNSKKNENQ-QKGMASDDKSQSNLNLNSDKNEIASSDRQS 176
           LHESRH HALRRARG GGRFLN+KKN++Q Q  MAS DKSQSN+NLNSDK++I SSD +S
Sbjct: 154 LHESRHQHALRRARGLGGRFLNAKKNQHQEQNEMASGDKSQSNINLNSDKSDIVSSDGKS 213

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147784447|emb|CAN63881.1| hypothetical protein VITISV_039357 [Vitis vinifera]

 Score =  276 bits (706), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 134/156 (85%), Positives = 141/156 (90%), Gaps = 6/156 (3%)

Query: 27   APAAYPYPDPYYRSIFAPYDAQPYPPQPYGGQPMVHLQLMGIQQAGVPLPTDAVEEPVFV 86
            A AAYPYPDPYYRSIFAPYDAQPYP Q Y GQPMVHLQLMGIQQAGVPLP+DAVEEPVFV
Sbjct: 1456 AQAAYPYPDPYYRSIFAPYDAQPYPAQHYSGQPMVHLQLMGIQQAGVPLPSDAVEEPVFV 1515

Query: 87   NAKQYHGILRRRQSRAKAESENKVLKSRK------PYLHESRHLHALRRARGCGGRFLNS 140
            NAKQYHGILRRRQSRAKAESENKV+KSRK      PYLHESRHLHALRRARGCGGRFLNS
Sbjct: 1516 NAKQYHGILRRRQSRAKAESENKVVKSRKLKLILQPYLHESRHLHALRRARGCGGRFLNS 1575

Query: 141  KKNENQQKGMASDDKSQSNLNLNSDKNEIASSDRQS 176
            KKNE++Q  +AS DKSQSN+NLNSDKNE+ASSD  S
Sbjct: 1576 KKNESEQNEVASGDKSQSNINLNSDKNELASSDSTS 1611

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356555881|ref|XP_003546258.1| PREDICTED: nuclear transcription factor Y subunit A-7-like isoform 1 [Glycine max] gi|356555883|ref|XP_003546259.1| PREDICTED: nuclear transcription factor Y subunit A-7-like isoform 2 [Glycine max]

 Score =  275 bits (704), Expect = 4e-72,   Method: Compositional matrix adjust.
 Identities = 145/176 (82%), Positives = 155/176 (88%), Gaps = 1/176 (0%)

Query: 2   GMSHPSITTPNVQYATH-QVGAGHAMAPAAYPYPDPYYRSIFAPYDAQPYPPQPYGGQPM 60
           G+SH  I T NVQYAT  Q+G GHA+ P  YPYPDPYYRSIFAPYDAQ YPPQPYGG PM
Sbjct: 30  GISHAGIGTQNVQYATPPQLGTGHAVVPPTYPYPDPYYRSIFAPYDAQTYPPQPYGGNPM 89

Query: 61  VHLQLMGIQQAGVPLPTDAVEEPVFVNAKQYHGILRRRQSRAKAESENKVLKSRKPYLHE 120
           VHLQLMGIQQAGVPLPTD VEEPVFVNAKQYHGILRRRQSRAKAESE K  ++RKPYLHE
Sbjct: 90  VHLQLMGIQQAGVPLPTDTVEEPVFVNAKQYHGILRRRQSRAKAESEKKAARNRKPYLHE 149

Query: 121 SRHLHALRRARGCGGRFLNSKKNENQQKGMASDDKSQSNLNLNSDKNEIASSDRQS 176
           SRHLHALRRARGCGGRFLNSKK+ENQQ  +AS D+SQSN+NLNSDKNE+A SDR S
Sbjct: 150 SRHLHALRRARGCGGRFLNSKKDENQQDEVASTDESQSNINLNSDKNELAPSDRTS 205

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356533053|ref|XP_003535083.1| PREDICTED: nuclear transcription factor Y subunit A-7-like isoform 2 [Glycine max]

 Score =  273 bits (699), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 143/176 (81%), Positives = 154/176 (87%), Gaps = 1/176 (0%)

Query: 2   GMSHPSITTPNVQYAT-HQVGAGHAMAPAAYPYPDPYYRSIFAPYDAQPYPPQPYGGQPM 60
           G+S+  I T NVQYAT  Q+G GHA+ P  YPYPDPYYRSIFAPYDAQ YPPQPYGG PM
Sbjct: 44  GISYAGIATQNVQYATPSQLGTGHAVVPPTYPYPDPYYRSIFAPYDAQTYPPQPYGGNPM 103

Query: 61  VHLQLMGIQQAGVPLPTDAVEEPVFVNAKQYHGILRRRQSRAKAESENKVLKSRKPYLHE 120
           VHLQLMGIQQAGVPLPTD VEEPVFVNAKQYHGILRRRQSRAKAESE K  ++RKPYLHE
Sbjct: 104 VHLQLMGIQQAGVPLPTDTVEEPVFVNAKQYHGILRRRQSRAKAESEKKAARNRKPYLHE 163

Query: 121 SRHLHALRRARGCGGRFLNSKKNENQQKGMASDDKSQSNLNLNSDKNEIASSDRQS 176
           SRHLHALRRARGCGGRFLNSKK+ENQQ  +AS D+SQS +NLNSDKNE+A SDR S
Sbjct: 164 SRHLHALRRARGCGGRFLNSKKDENQQDEVASTDESQSTINLNSDKNELAPSDRTS 219

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356533051|ref|XP_003535082.1| PREDICTED: nuclear transcription factor Y subunit A-7-like isoform 1 [Glycine max]

 Score =  273 bits (699), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 143/176 (81%), Positives = 154/176 (87%), Gaps = 1/176 (0%)

Query: 2   GMSHPSITTPNVQYAT-HQVGAGHAMAPAAYPYPDPYYRSIFAPYDAQPYPPQPYGGQPM 60
           G+S+  I T NVQYAT  Q+G GHA+ P  YPYPDPYYRSIFAPYDAQ YPPQPYGG PM
Sbjct: 29  GISYAGIATQNVQYATPSQLGTGHAVVPPTYPYPDPYYRSIFAPYDAQTYPPQPYGGNPM 88

Query: 61  VHLQLMGIQQAGVPLPTDAVEEPVFVNAKQYHGILRRRQSRAKAESENKVLKSRKPYLHE 120
           VHLQLMGIQQAGVPLPTD VEEPVFVNAKQYHGILRRRQSRAKAESE K  ++RKPYLHE
Sbjct: 89  VHLQLMGIQQAGVPLPTDTVEEPVFVNAKQYHGILRRRQSRAKAESEKKAARNRKPYLHE 148

Query: 121 SRHLHALRRARGCGGRFLNSKKNENQQKGMASDDKSQSNLNLNSDKNEIASSDRQS 176
           SRHLHALRRARGCGGRFLNSKK+ENQQ  +AS D+SQS +NLNSDKNE+A SDR S
Sbjct: 149 SRHLHALRRARGCGGRFLNSKKDENQQDEVASTDESQSTINLNSDKNELAPSDRTS 204

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449490734|ref|XP_004158691.1| PREDICTED: nuclear transcription factor Y subunit A-7-like, partial [Cucumis sativus]

 Score =  267 bits (683), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 140/165 (84%), Positives = 150/165 (90%)

Query: 9   TTPNVQYATHQVGAGHAMAPAAYPYPDPYYRSIFAPYDAQPYPPQPYGGQPMVHLQLMGI 68
           +TPN   A+ QVGAGH+M P AYPYPDPYYRSIF PYDAQPYPPQPYGGQPMVHLQLMGI
Sbjct: 36  STPNQYVASPQVGAGHSMVPPAYPYPDPYYRSIFTPYDAQPYPPQPYGGQPMVHLQLMGI 95

Query: 69  QQAGVPLPTDAVEEPVFVNAKQYHGILRRRQSRAKAESENKVLKSRKPYLHESRHLHALR 128
           QQAGVPLPTDAVEEPVFVNAKQYHGILRRRQSRAKAESENK LKSRKPYLHESRHLHALR
Sbjct: 96  QQAGVPLPTDAVEEPVFVNAKQYHGILRRRQSRAKAESENKALKSRKPYLHESRHLHALR 155

Query: 129 RARGCGGRFLNSKKNENQQKGMASDDKSQSNLNLNSDKNEIASSD 173
           RARGCGGRFL S KNEN Q  +AS DKSQ N+NLNSD++++ASS+
Sbjct: 156 RARGCGGRFLKSNKNENHQNEVASGDKSQPNINLNSDRSDLASSE 200

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449433674|ref|XP_004134622.1| PREDICTED: nuclear transcription factor Y subunit A-7-like isoform 1 [Cucumis sativus] gi|449433676|ref|XP_004134623.1| PREDICTED: nuclear transcription factor Y subunit A-7-like isoform 2 [Cucumis sativus]

 Score =  267 bits (683), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 140/165 (84%), Positives = 150/165 (90%)

Query: 9   TTPNVQYATHQVGAGHAMAPAAYPYPDPYYRSIFAPYDAQPYPPQPYGGQPMVHLQLMGI 68
           +TPN   A+ QVGAGH+M P AYPYPDPYYRSIF PYDAQPYPPQPYGGQPMVHLQLMGI
Sbjct: 37  STPNQYVASPQVGAGHSMVPPAYPYPDPYYRSIFTPYDAQPYPPQPYGGQPMVHLQLMGI 96

Query: 69  QQAGVPLPTDAVEEPVFVNAKQYHGILRRRQSRAKAESENKVLKSRKPYLHESRHLHALR 128
           QQAGVPLPTDAVEEPVFVNAKQYHGILRRRQSRAKAESENK LKSRKPYLHESRHLHALR
Sbjct: 97  QQAGVPLPTDAVEEPVFVNAKQYHGILRRRQSRAKAESENKALKSRKPYLHESRHLHALR 156

Query: 129 RARGCGGRFLNSKKNENQQKGMASDDKSQSNLNLNSDKNEIASSD 173
           RARGCGGRFL S KNEN Q  +AS DKSQ N+NLNSD++++ASS+
Sbjct: 157 RARGCGGRFLKSNKNENHQNEVASGDKSQPNINLNSDRSDLASSE 201

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	176
TAIR|locus:2028150	190	NF-YA7 ""nuclear factor Y, sub	0.636	0.589	0.689	4.8e-39
TAIR|locus:2061534	198	NF-YA4 ""nuclear factor Y, sub	0.636	0.565	0.612	1.1e-34
TAIR|locus:2014375	308	NF-YA5 ""nuclear factor Y, sub	0.579	0.331	0.567	1.3e-27
TAIR|locus:2007953	328	NF-YA8 ""nuclear factor Y, sub	0.420	0.225	0.706	3.6e-25
TAIR|locus:2088791	303	NF-YA9 ""nuclear factor Y, sub	0.596	0.346	0.535	3.6e-25
TAIR|locus:2088232	308	NF-YA6 ""nuclear factor Y, sub	0.511	0.292	0.582	4.6e-25
TAIR|locus:2032758	341	NF-YA3 ""nuclear factor Y, sub	0.551	0.284	0.545	2e-24
TAIR|locus:2182245	272	NF-YA1 ""nuclear factor Y, sub	0.602	0.389	0.509	1e-22
TAIR|locus:2144113	269	NF-YA10 ""nuclear factor Y, su	0.556	0.364	0.495	1.3e-20
TAIR|locus:2078072	295	NF-YA2 ""nuclear factor Y, sub	0.585	0.349	0.462	3.5e-20

TAIR|locus:2028150 NF-YA7 ""nuclear factor Y, subunit A7"" [Arabidopsis thaliana (taxid:3702)]

 Score = 417 (151.9 bits), Expect = 4.8e-39, P = 4.8e-39
 Identities = 80/116 (68%), Positives = 97/116 (83%)

Query:    61 VHLQLMGIQQAGVPLPTDAVEEPVFVNAKQYHGILRRRQSRAKAESENKVLKSRKPYLHE 120
             VHLQLMG+QQ GVPLP+DAVEEPVFVNAKQYHGILRRRQSRA+ ES+NKV+KSRKPYLHE
Sbjct:    79 VHLQLMGVQQQGVPLPSDAVEEPVFVNAKQYHGILRRRQSRARLESQNKVIKSRKPYLHE 138

Query:   121 SRHLHALRRARGCGGRFLNSKKNENQQKGMASDDKSQSNLNLNSDKNEIASSDRQS 176
             SRHLHA+RR RGCGGRFLN+KK +   +  + ++KS    NL++ K+ +A+S   S
Sbjct:   139 SRHLHAIRRPRGCGGRFLNAKKEDEHHEDSSHEEKS----NLSAGKSAMAASSGTS 190

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0016602 "CCAAT-binding factor complex" evidence=ISS

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=RCA;IDA

GO:0016036 "cellular response to phosphate starvation" evidence=RCA

GO:0019375 "galactolipid biosynthetic process" evidence=RCA

TAIR|locus:2061534 NF-YA4 ""nuclear factor Y, subunit A4"" [Arabidopsis thaliana (taxid:3702)]

 Score = 376 (137.4 bits), Expect = 1.1e-34, P = 1.1e-34
 Identities = 71/116 (61%), Positives = 95/116 (81%)

Query:    61 VHLQLMGIQQAGVPLPTDAVEEPVFVNAKQYHGILRRRQSRAKAESENKVLKSRKPYLHE 120
             V LQLMG+QQ GVPL  DAVEEPVFVNAKQYHGILRRRQSRAK E+ N+ +K++KPY+HE
Sbjct:    77 VQLQLMGMQQPGVPLQCDAVEEPVFVNAKQYHGILRRRQSRAKLEARNRAIKAKKPYMHE 136

Query:   121 SRHLHALRRARGCGGRFLNSKK----NENQQKGMASDDKSQSNLNLNSDKNEIASS 172
             SRHLHA+RR RGCGGRFLN+KK    ++ +++  + ++ S+++ +L S+K  +A+S
Sbjct:   137 SRHLHAIRRPRGCGGRFLNAKKENGDHKEEEEATSDENTSEASSSLRSEKLAMATS 192

GO:0003677 "DNA binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0016602 "CCAAT-binding factor complex" evidence=IEA;ISS

GO:0048510 "regulation of timing of transition from vegetative to reproductive phase" evidence=IMP

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IDA

GO:0009411 "response to UV" evidence=RCA

GO:0009651 "response to salt stress" evidence=RCA

GO:0009723 "response to ethylene stimulus" evidence=RCA

GO:0009733 "response to auxin stimulus" evidence=RCA

GO:0009737 "response to abscisic acid stimulus" evidence=RCA

GO:0009739 "response to gibberellin stimulus" evidence=RCA

GO:0009751 "response to salicylic acid stimulus" evidence=RCA

GO:0009753 "response to jasmonic acid stimulus" evidence=RCA

GO:0009813 "flavonoid biosynthetic process" evidence=RCA

GO:0010264 "myo-inositol hexakisphosphate biosynthetic process" evidence=RCA

GO:0046686 "response to cadmium ion" evidence=RCA

TAIR|locus:2014375 NF-YA5 ""nuclear factor Y, subunit A5"" [Arabidopsis thaliana (taxid:3702)]

 Score = 309 (113.8 bits), Expect = 1.3e-27, P = 1.3e-27
 Identities = 59/104 (56%), Positives = 77/104 (74%)

Query:    62 HLQLMGIQQAGVPLPTDAVE-EPVFVNAKQYHGILRRRQSRAKAESENKVLKSRKPYLHE 120
             HL++MG+  + VPLP    E EP+FVNAKQYH ILRRR+ RAK E++NK++K RKPYLHE
Sbjct:   157 HLEMMGLVSSRVPLPHHIQENEPIFVNAKQYHAILRRRKHRAKLEAQNKLIKCRKPYLHE 216

Query:   121 SRHLHALRRARGCGGRFLNSKKNENQQKGMASDDKSQS-NLNLN 163
             SRHLHAL+RARG GGRFLN+KK +     + S   +   N +++
Sbjct:   217 SRHLHALKRARGSGGRFLNTKKLQESSNSLCSSQMANGQNFSMS 260

GO:0003677 "DNA binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

GO:0016602 "CCAAT-binding factor complex" evidence=IEA;ISS

GO:0009738 "abscisic acid mediated signaling pathway" evidence=IMP

GO:0009785 "blue light signaling pathway" evidence=IMP

GO:0009414 "response to water deprivation" evidence=IMP

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=RCA;IDA

GO:0016036 "cellular response to phosphate starvation" evidence=RCA

GO:0019375 "galactolipid biosynthetic process" evidence=RCA

GO:0009790 "embryo development" evidence=IMP

GO:0010262 "somatic embryogenesis" evidence=IMP

GO:0048316 "seed development" evidence=IMP

TAIR|locus:2007953 NF-YA8 ""nuclear factor Y, subunit A8"" [Arabidopsis thaliana (taxid:3702)]

 Score = 286 (105.7 bits), Expect = 3.6e-25, P = 3.6e-25
 Identities = 53/75 (70%), Positives = 64/75 (85%)

Query:    69 QQAGVPLPTDAVE-EPVFVNAKQYHGILRRRQSRAKAESENKVLKSRKPYLHESRHLHAL 127
             Q   VPLP D +E EPVFVNAKQ+H I+RRRQ RAK E++NK++K+RKPYLHESRH+HAL
Sbjct:   158 QMTRVPLPFDLIENEPVFVNAKQFHAIMRRRQQRAKLEAQNKLIKARKPYLHESRHVHAL 217

Query:   128 RRARGCGGRFLNSKK 142
             +R RG GGRFLN+KK
Sbjct:   218 KRPRGSGGRFLNTKK 232

GO:0003677 "DNA binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0016602 "CCAAT-binding factor complex" evidence=IEA;ISS

TAIR|locus:2088791 NF-YA9 ""nuclear factor Y, subunit A9"" [Arabidopsis thaliana (taxid:3702)]

 Score = 286 (105.7 bits), Expect = 3.6e-25, P = 3.6e-25
 Identities = 60/112 (53%), Positives = 77/112 (68%)

Query:    67 GIQQAGVPLPTDAVEEPVFVNAKQYHGILRRRQSRAKAESENKVLKSRKPYLHESRHLHA 126
             G+  + +PLP +  +EPVFVNAKQY  ILRRRQ+RAKAE E K++KSRKPYLHESRH HA
Sbjct:   151 GMPHSRMPLPPEMAQEPVFVNAKQYQAILRRRQARAKAELEKKLIKSRKPYLHESRHQHA 210

Query:   127 LRRARGCGGRFLNSKKNENQQKGMASDDKS-----QSNLNLNSDKNEIASSD 173
             +RR RG GGRF  +KK   +     +++KS     QS  + NSD+ E  + D
Sbjct:   211 MRRPRGTGGRF--AKKTNTEASKRKAEEKSNGHVTQSPSSSNSDQGEAWNGD 260

GO:0003677 "DNA binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

GO:0016602 "CCAAT-binding factor complex" evidence=IEA;ISS

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IDA

GO:0009555 "pollen development" evidence=IMP

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA

GO:0009790 "embryo development" evidence=IMP

GO:0010262 "somatic embryogenesis" evidence=IMP

GO:0048316 "seed development" evidence=IMP

GO:0055046 "microgametogenesis" evidence=IMP

TAIR|locus:2088232 NF-YA6 ""nuclear factor Y, subunit A6"" [Arabidopsis thaliana (taxid:3702)]

 Score = 285 (105.4 bits), Expect = 4.6e-25, P = 4.6e-25
 Identities = 53/91 (58%), Positives = 70/91 (76%)

Query:    62 HLQLMGIQQAGVPLPTDAVE-EPVFVNAKQYHGILRRRQSRAKAESENKVLKSRKPYLHE 120
             H Q+ G+  + +PLP +  E EP+FVNAKQY  ILRRR+ RAK E++NK++K RKPYLHE
Sbjct:   150 HPQIRGLVPSRMPLPHNIPENEPIFVNAKQYQAILRRRERRAKLEAQNKLIKVRKPYLHE 209

Query:   121 SRHLHALRRARGCGGRFLNSKKNENQQKGMA 151
             SRHLHAL+R RG GGRFLN+KK++     ++
Sbjct:   210 SRHLHALKRVRGSGGRFLNTKKHQESNSSLS 240

GO:0003677 "DNA binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

GO:0016602 "CCAAT-binding factor complex" evidence=IEA;ISS

GO:0009790 "embryo development" evidence=IMP

GO:0010262 "somatic embryogenesis" evidence=IMP

GO:0048316 "seed development" evidence=IMP

TAIR|locus:2032758 NF-YA3 ""nuclear factor Y, subunit A3"" [Arabidopsis thaliana (taxid:3702)]

 Score = 279 (103.3 bits), Expect = 2.0e-24, P = 2.0e-24
 Identities = 54/99 (54%), Positives = 74/99 (74%)

Query:    64 QLMGIQQAGVPLPTDAVE-EPVFVNAKQYHGILRRRQSRAKAESENKVLKSRK-PYLHES 121
             Q++ +    VPLP +  E +PVFVNAKQYH I+RRRQ RAK E++NK++++RK PYLHES
Sbjct:   160 QMVSMIPGRVPLPAELTETDPVFVNAKQYHAIMRRRQQRAKLEAQNKLIRARKVPYLHES 219

Query:   122 RHLHALRRARGCGGRFLNSKKNENQQKGMASDDKSQSNL 160
             RH+HAL+R RG GGRFLN+KK   + +  A+ ++ Q  L
Sbjct:   220 RHVHALKRPRGSGGRFLNTKKLLQESEQAAAREQEQDKL 258

GO:0003677 "DNA binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;IGI;ISS

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0016602 "CCAAT-binding factor complex" evidence=IEA;ISS

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=RCA

TAIR|locus:2182245 NF-YA1 ""nuclear factor Y, subunit A1"" [Arabidopsis thaliana (taxid:3702)]

 Score = 263 (97.6 bits), Expect = 1.0e-22, P = 1.0e-22
 Identities = 55/108 (50%), Positives = 71/108 (65%)

Query:    66 MGIQQAGVPLPTDAVEEPVFVNAKQYHGILRRRQSRAKAESENKVLKSRKPYLHESRHLH 125
             +G+ +    LP D  +EPV+VNAKQY GILRRR++RAKAE E KV++ RKPYLHESRH H
Sbjct:   156 LGMPRERTALPLDMAQEPVYVNAKQYEGILRRRKARAKAELERKVIRDRKPYLHESRHKH 215

Query:   126 ALRRARGCGGRFLNSKKNENQQKGMASDDKSQSNLNLNSDKNEIASSD 173
             A+RRAR  GGRF  +KK+E +    A     +     NS  +E   +D
Sbjct:   216 AMRRARASGGRF--AKKSEVEAGEDAGGRDRERGSATNSSGSEQVETD 261

GO:0003677 "DNA binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;IGI;ISS

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

GO:0009793 "embryo development ending in seed dormancy" evidence=NAS

GO:0016602 "CCAAT-binding factor complex" evidence=IEA;ISS

GO:0048510 "regulation of timing of transition from vegetative to reproductive phase" evidence=IMP

GO:0009790 "embryo development" evidence=IMP

GO:0010262 "somatic embryogenesis" evidence=IMP

GO:0048316 "seed development" evidence=IMP

GO:0055046 "microgametogenesis" evidence=IMP

TAIR|locus:2144113 NF-YA10 ""nuclear factor Y, subunit A10"" [Arabidopsis thaliana (taxid:3702)]

 Score = 243 (90.6 bits), Expect = 1.3e-20, P = 1.3e-20
 Identities = 52/105 (49%), Positives = 74/105 (70%)

Query:    73 VPLPTDAVEE-PVFVNAKQYHGILRRRQSRAKAESENKVLKSRKPYLHESRHLHALRRAR 131
             +PL  +  E+  ++VN+KQYHGI+RRRQSRAKAE   K+ + RKPY+H SRHLHA+RR R
Sbjct:   124 IPLKMETEEDGTIYVNSKQYHGIIRRRQSRAKAE---KLSRCRKPYMHHSRHLHAMRRPR 180

Query:   132 GCGGRFLNSKKNENQQKGMASDDKSQSNLNLNSDKNEIASSDRQS 176
             G GGRFLN+K  +  ++   S+  SQS+  +   +NE  +S R++
Sbjct:   181 GSGGRFLNTKTADAAKQSKPSN--SQSS-EVFHPENETINSSREA 222

GO:0003677 "DNA binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0016602 "CCAAT-binding factor complex" evidence=IEA;ISS

GO:0009718 "anthocyanin-containing compound biosynthetic process" evidence=RCA

TAIR|locus:2078072 NF-YA2 ""nuclear factor Y, subunit A2"" [Arabidopsis thaliana (taxid:3702)]

 Score = 239 (89.2 bits), Expect = 3.5e-20, P = 3.5e-20
 Identities = 50/108 (46%), Positives = 70/108 (64%)

Query:    73 VPLPTDAVEEPVFVNAKQYHGILRRRQSRAKAES--ENKVLKSR--KPYLHESRHLHALR 128
             +PL  +  +  ++VN+KQYHGI+RRRQSRAKA +  + K L SR  KPY+H SRHLHALR
Sbjct:   127 LPLNMETEDSTIYVNSKQYHGIIRRRQSRAKAAAVLDQKKLSSRCRKPYMHHSRHLHALR 186

Query:   129 RARGCGGRFLNSKKNENQQKGMASDDKSQSNLNLNSDKNEIASSDRQS 176
             R RG GGRFLN+K ++N +    +  K   ++ + S      S+ + S
Sbjct:   187 RPRGSGGRFLNTK-SQNLENSGTNAKKGDGSMQIQSQPKPQQSNSQNS 233

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;IGI;ISS

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0016602 "CCAAT-binding factor complex" evidence=ISS

GO:0009567 "double fertilization forming a zygote and endosperm" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q84JP1	NFYA7_ARATH	No assigned EC number	0.6776	0.7897	0.7315	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: eugene3.02360004 hypothetical protein (208 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	176
pfam02045	57	pfam02045, CBFB_NFYA, CCAAT-binding transcription	3e-33
smart00521	62	smart00521, CBF, CCAAT-Binding transcription Facto	6e-33
COG5224	248	COG5224, HAP2, CCAAT-binding factor, subunit B [Tr	4e-09

>gnl|CDD|190198 pfam02045, CBFB_NFYA, CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B

 Score =  112 bits (281), Expect = 3e-33
 Identities = 44/57 (77%), Positives = 52/57 (91%)

Query: 81  EEPVFVNAKQYHGILRRRQSRAKAESENKVLKSRKPYLHESRHLHALRRARGCGGRF 137
           +EP++VNAKQYH ILRRRQ+RAK E+ENK++KSRKPYLHESRH HA+RR RG GGRF
Sbjct: 1   DEPIYVNAKQYHRILRRRQARAKLEAENKLIKSRKPYLHESRHKHAMRRPRGSGGRF 57

Length = 57

>gnl|CDD|128795 smart00521, CBF, CCAAT-Binding transcription Factor

 Score =  111 bits (279), Expect = 6e-33
 Identities = 47/61 (77%), Positives = 53/61 (86%)

Query: 79  AVEEPVFVNAKQYHGILRRRQSRAKAESENKVLKSRKPYLHESRHLHALRRARGCGGRFL 138
           A EEPV+VNAKQYH ILRRRQ+RAK E++ K+ K RKPYLHESRHLHA+RR RG GGRFL
Sbjct: 1   AEEEPVYVNAKQYHRILRRRQARAKLEAQGKLPKERKPYLHESRHLHAMRRPRGSGGRFL 60

Query: 139 N 139
           N
Sbjct: 61  N 61

Length = 62

>gnl|CDD|227549 COG5224, HAP2, CCAAT-binding factor, subunit B [Transcription]

 Score = 53.7 bits (128), Expect = 4e-09
 Identities = 27/74 (36%), Positives = 37/74 (50%), Gaps = 2/74 (2%)

Query: 81  EEPVFVNAKQYHGILRRRQSRAKAESENKVLKSRKPYLHESRHLHALRRARGCGGRFLNS 140
            +P +VNAKQ + I +R   R   +    V   R  YLHESRH HA+ R R   GRFL +
Sbjct: 158 FQPDYVNAKQGNEISKRPGLRVYLDD--SVSAGRAFYLHESRHKHAMLRVRDPTGRFLTA 215

Query: 141 KKNENQQKGMASDD 154
            + +       + D
Sbjct: 216 SEIDPLNLTGNTQD 229

Length = 248

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	176
KOG1561	307	consensus CCAAT-binding factor, subunit B (HAP2) [	100.0
smart00521	62	CBF CCAAT-Binding transcription Factor.	100.0
PF02045	58	CBFB_NFYA: CCAAT-binding transcription factor (CBF	100.0
COG5224	248	HAP2 CCAAT-binding factor, subunit B [Transcriptio	99.84
PF06203	45	CCT: CCT motif; InterPro: IPR010402 The CCT (CONST	81.05

>KOG1561 consensus CCAAT-binding factor, subunit B (HAP2) [Transcription]

Probab=100.00  E-value=3.4e-45  Score=319.14  Aligned_cols=118  Identities=50%  Similarity=0.825  Sum_probs=102.3

Q ss_pred             CCccccccC-CCCCCCCcccccccCCCCCCCCCCCCCCC--cchhhhcccCC-CCCCCCCCCCC-CceeechhhhHHHHH
Q 030496           22 AGHAMAPAA-YPYPDPYYRSIFAPYDAQPYPPQPYGGQP--MVHLQLMGIQQ-AGVPLPTDAVE-EPVFVNAKQYHGILR   96 (176)
Q Consensus        22 ~g~s~a~~~-yPy~Dpyygg~~a~y~~q~~~~~~y~~q~--~~~~q~~G~~~-~r~plp~~~~e-ePvyVNaKQY~rIlr   96 (176)
                      ..|..++++ +||.+|+|+|++..++  .     |++++  .+++|+.||.+ .|+|||.++.| |||||||||||+|||
T Consensus       126 ~~~~~~~~s~~~~~~p~~~g~~~~~~--~-----y~~~~~~~~~~q~~g~~~~~r~pLP~~~~e~ePl~VNaKQY~~Ilr  198 (307)
T KOG1561|consen  126 SMSPANNTSGNPITSPHYRGVLDMSG--A-----YSGQPTNTASTQYSGPVPHDRTPLPQTDSETEPLYVNAKQYHRILR  198 (307)
T ss_pred             ccccccccccCCCCCCcccceecccc--c-----ccCCCCccccccccCCCCcCcccCCccccCCCceeEcHHHHHHHHH
Confidence            445555554 8899999999999543  2     33333  36789999998 99999998877 999999999999999


Q ss_pred             HHHHHHHHHHhchhhhcCCCcccchhhHHHhhccCCCCCccccchhhhhh
Q 030496           97 RRQSRAKAESENKVLKSRKPYLHESRHLHALRRARGCGGRFLNSKKNENQ  146 (176)
Q Consensus        97 RRq~Rakle~~~kl~k~rk~YlHESRH~HAm~R~RG~gGRFL~~~~~~~~  146 (176)
                      ||++|||||+++||+|.||||||||||+|||||+||+||||||+||.+.+
T Consensus       199 RRq~RaKlEa~~klik~RkpYLHESRH~HAmkR~RG~GGRFln~k~~~~~  248 (307)
T KOG1561|consen  199 RRQARAKLEATTKLIKARKPYLHESRHLHAMKRARGEGGRFLNTKEYHDD  248 (307)
T ss_pred             HHHHHhhhhhcccchhhcCccccchhhHHHhhcccCCCCCCCchhhhhhh
Confidence            99999999999999999999999999999999999999999999997654

>smart00521 CBF CCAAT-Binding transcription Factor

Probab=100.00  E-value=1.9e-39  Score=230.02  Aligned_cols=62  Identities=76%  Similarity=1.183  Sum_probs=60.1

Q ss_pred             CCCCceeechhhhHHHHHHHHHHHHHHHhchhhhcCCCcccchhhHHHhhccCCCCCccccc
Q 030496           79 AVEEPVFVNAKQYHGILRRRQSRAKAESENKVLKSRKPYLHESRHLHALRRARGCGGRFLNS  140 (176)
Q Consensus        79 ~~eePvyVNaKQY~rIlrRRq~Rakle~~~kl~k~rk~YlHESRH~HAm~R~RG~gGRFL~~  140 (176)
                      ++|+|||||||||++|||||++|||+|++++|++.||||||||||+|||+|+||+||||||+
T Consensus         1 ~~~~piyVNaKQy~~IlrRR~~Rak~e~~~kl~~~rkpYlhESRH~HAm~R~Rg~gGRFl~~   62 (62)
T smart00521        1 AEEEPVYVNAKQYHRILRRRQARAKLEAQGKLPKERKPYLHESRHLHAMRRPRGSGGRFLNT   62 (62)
T ss_pred             CCCcceeEcHHHHHHHHHHHHHHHHHHHhcchhhccCCcccchhHHHHHccCcCCCCCCCCC
Confidence            46899999999999999999999999999999999999999999999999999999999985

>PF02045 CBFB_NFYA: CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B; InterPro: IPR001289 The CCAAT-binding factor (CBFB/NF-YA) is a mammalian transcription factor that binds to a CCAAT motif in the promoters of a wide variety of genes, including type I collagen and albumin []

Probab=100.00  E-value=6.2e-37  Score=214.80  Aligned_cols=57  Identities=75%  Similarity=1.184  Sum_probs=56.3

Q ss_pred             CCceeechhhhHHHHHHHHHHHHHHHhchh-hhcCCCcccchhhHHHhhccCCCCCcc
Q 030496           81 EEPVFVNAKQYHGILRRRQSRAKAESENKV-LKSRKPYLHESRHLHALRRARGCGGRF  137 (176)
Q Consensus        81 eePvyVNaKQY~rIlrRRq~Rakle~~~kl-~k~rk~YlHESRH~HAm~R~RG~gGRF  137 (176)
                      |+|||||||||++|||||++|||||+++|+ ++.||+|||||||+|||+|+||+||||
T Consensus         1 ~~piyVNaKQY~rIlrRR~~Rakle~~~k~~~~~rk~YlheSRH~HA~~R~Rg~gGRF   58 (58)
T PF02045_consen    1 EEPIYVNAKQYHRILRRRQARAKLEAEGKLSPKKRKPYLHESRHKHAMRRPRGPGGRF   58 (58)
T ss_pred             CCCeeECHHHHHHHHHHHHHHHHHHHhCCcchhhhHHHHHHHHHHHHHcCccCCCCCC
Confidence            689999999999999999999999999999 999999999999999999999999999

The factor is a heteromeric complex of A and B subunits, both of which are required for DNA-binding []. The subunits can interact in the absence of DNA-binding, conserved regions in each being important in mediating this interaction. The B subunit contains a region of similarity with the yeast protein HAP2 []. For the B subunit it has been suggested that the N-terminal portion of the conserved region is involved in subunit interaction and the C-terminal region involved in DNA-binding [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>COG5224 HAP2 CCAAT-binding factor, subunit B [Transcription]

Probab=99.84  E-value=6e-22  Score=169.28  Aligned_cols=66  Identities=39%  Similarity=0.508  Sum_probs=60.8

Q ss_pred             CCCceeechhhhHHHHHHHHHHHHHHHhchhhhcCCCcccchhhHHHhhccCCCCCccccchhhhhhh
Q 030496           80 VEEPVFVNAKQYHGILRRRQSRAKAESENKVLKSRKPYLHESRHLHALRRARGCGGRFLNSKKNENQQ  147 (176)
Q Consensus        80 ~eePvyVNaKQY~rIlrRRq~Rakle~~~kl~k~rk~YlHESRH~HAm~R~RG~gGRFL~~~~~~~~~  147 (176)
                      .++|.|||+|||++|++||-+|++||..  |.-.|..|||||||+|||+|+|+++||||++.|.+..+
T Consensus       157 sfqp~Yvnakq~n~i~kr~~~r~~ld~~--~~~~r~~ylHesrhkham~r~r~ptgrfLtasEi~~ln  222 (248)
T COG5224         157 SFQPDYVNAKQGNEISKRPGLRVYLDDS--VSAGRAFYLHESRHKHAMLRVRDPTGRFLTASEIDPLN  222 (248)
T ss_pred             ccCcchhhhhhhhHHhcchhHHHHHHHH--hhhhhhhccccchhhhhhhcccCCCcceecHHhhhhhh
Confidence            4789999999999999999999999986  55677779999999999999999999999999998775

>PF06203 CCT: CCT motif; InterPro: IPR010402 The CCT (CONSTANS, CO-like, and TOC1) domain is a highly conserved basic module of ~43 amino acids, which is found near the C terminus of plant proteins often involved in light signal transduction

Probab=81.05  E-value=2  Score=29.12  Aligned_cols=27  Identities=37%  Similarity=0.401  Sum_probs=22.9

Q ss_pred             CCcccchhhHHHhhccCCCCCccccchh
Q 030496          115 KPYLHESRHLHALRRARGCGGRFLNSKK  142 (176)
Q Consensus       115 k~YlHESRH~HAm~R~RG~gGRFL~~~~  142 (176)
                      |.-.++||..=|..|+|-. |||++.++
T Consensus        19 kkirY~~Rk~~A~~R~Rvk-GRFvk~~e   45 (45)
T PF06203_consen   19 KKIRYESRKAVADKRPRVK-GRFVKKSE   45 (45)
T ss_pred             ccCCcchHHHHHhhCCccC-CcccCCCC
Confidence            4577899999999999975 99997653

The CCT domain is found in association with other domains, such as the B-box zinc finger, the GATA-type zinc finger, the ZIM motif or the response regulatory domain. The CCT domain contains a putative nuclear localisation signal within the second half of the CCT motif and has been shown to be involved in nuclear localization and probably also has a role in protein-protein interaction [].; GO: 0005515 protein binding

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	176
4awl_A	78	The Nf-y Transcription Factor Is Structurally And F		5e-18
4g91_A	64	Ccaat-Binding Complex From Aspergillus Nidulans Len		1e-14

>pdb|4AWL|A Chain A, The Nf-y Transcription Factor Is Structurally And Functionally A Sequence Specific Histone Length = 78

Iteration: 1
 Score = 87.0 bits (214), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 40/66 (60%), Positives = 53/66 (80%)
Query: 80  VEEPVFVNAKQYHGILRRRQSRAKAESENKVLKSRKPYLHESRHLHALRRARGCGGRFLN 139
           +EEP++VNAKQYH IL+RRQ+RAK E+E K+ K R+ YLHESRH HA+ R RG GGRF +
Sbjct: 1   MEEPLYVNAKQYHRILKRRQARAKLEAEGKIPKERRKYLHESRHRHAMARKRGEGGRFFS 60
Query: 140 SKKNEN 145
            K+ ++
Sbjct: 61  PKEKDS 66

>pdb|4G91|A Chain A, Ccaat-Binding Complex From Aspergillus Nidulans Length = 64

Iteration: 1
 Score = 76.3 bits (186), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 37/62 (59%), Positives = 48/62 (77%), Gaps = 1/62 (1%)
Query: 80  VEEPVFVNAKQYHGILRRRQSRAKAESENKVL-KSRKPYLHESRHLHALRRARGCGGRFL 138
           +E P++VNAKQ+H IL+RR +R K E + ++  K RKPYLHESRH HA+RR RG GGRFL
Sbjct: 1   MESPLYVNAKQFHRILKRRVARQKLEEQLRLTSKGRKPYLHESRHNHAMRRPRGPGGRFL 60
Query: 139 NS 140
            +
Sbjct: 61  TA 62

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	176
4g92_A	64	HAPB protein; transcription factor, nucleosome, mi	100.0

>4g92_A HAPB protein; transcription factor, nucleosome, minor groove binding, CCAA complex, histone fold motif, specific binding to the ccaat- nucleus; HET: DNA; 1.80A {Emericella nidulans} PDB: 4g91_A*

Probab=100.00  E-value=1.4e-39  Score=230.76  Aligned_cols=62  Identities=60%  Similarity=1.007  Sum_probs=58.6

Q ss_pred             CCceeechhhhHHHHHHHHHHHHHHHhchhh-hcCCCcccchhhHHHhhccCCCCCccccchh
Q 030496           81 EEPVFVNAKQYHGILRRRQSRAKAESENKVL-KSRKPYLHESRHLHALRRARGCGGRFLNSKK  142 (176)
Q Consensus        81 eePvyVNaKQY~rIlrRRq~Rakle~~~kl~-k~rk~YlHESRH~HAm~R~RG~gGRFL~~~~  142 (176)
                      |||||||||||++|||||++|+|+|++++|+ +.||||||||||+|||+|+||+||||||++|
T Consensus         2 eePiyVNaKQy~~IlrRR~~Rakle~~~kl~~~~rk~YlhESRH~HAm~R~Rg~gGRFl~~~e   64 (64)
T 4g92_A            2 ESPLYVNAKQFHRILKRRVARQKLEEQLRLTSKGRKPYLHESRHNHAMRRPRGPGGRFLTADE   64 (64)
T ss_dssp             -CCSCCCTTTHHHHHHHHHHHHHHHHHTTCCSSSCCSCSCHHHHHHHHHSCBCTTSCBCCCC-
T ss_pred             CCCeeECHHHHHHHHHHHHHHHHHHHhCCcccccccCcchhHHHHHHhcCCcCCCCccccCCC
Confidence            7999999999999999999999999999985 8899999999999999999999999999875

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00