Citrus Sinensis ID: 030504
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 176 | 2.2.26 [Sep-21-2011] | |||||||
| Q8H156 | 221 | GTP-binding nuclear prote | yes | no | 1.0 | 0.796 | 0.977 | 1e-101 | |
| P41919 | 221 | GTP-binding nuclear prote | N/A | no | 1.0 | 0.796 | 0.977 | 1e-101 | |
| P41917 | 221 | GTP-binding nuclear prote | yes | no | 1.0 | 0.796 | 0.977 | 1e-101 | |
| P38548 | 221 | GTP-binding nuclear prote | N/A | no | 1.0 | 0.796 | 0.977 | 1e-101 | |
| P41916 | 221 | GTP-binding nuclear prote | yes | no | 1.0 | 0.796 | 0.977 | 1e-101 | |
| P38546 | 221 | GTP-binding nuclear prote | N/A | no | 0.988 | 0.787 | 0.988 | 1e-100 | |
| P38547 | 221 | GTP-binding nuclear prote | N/A | no | 0.988 | 0.787 | 0.988 | 1e-100 | |
| P41918 | 221 | GTP-binding nuclear prote | N/A | no | 1.0 | 0.796 | 0.971 | 1e-100 | |
| Q7F7I7 | 221 | GTP-binding nuclear prote | yes | no | 0.988 | 0.787 | 0.977 | 1e-100 | |
| A2WSI7 | 221 | GTP-binding nuclear prote | N/A | no | 0.988 | 0.787 | 0.977 | 1e-100 |
| >sp|Q8H156|RAN3_ARATH GTP-binding nuclear protein Ran-3 OS=Arabidopsis thaliana GN=RAN3 PE=1 SV=2 | Back alignment and function desciption |
|---|
Score = 367 bits (941), Expect = e-101, Method: Compositional matrix adjust.
Identities = 172/176 (97%), Positives = 174/176 (98%)
Query: 1 MALPSQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG 60
MALP+QQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG
Sbjct: 1 MALPNQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG 60
Query: 61 KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI 120
KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI
Sbjct: 61 KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI 120
Query: 121 VLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGSTD 176
VLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAG +
Sbjct: 121 VLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDAN 176
|
GTP-binding protein involved in nucleocytoplasmic transport. Required for the import of protein into the nucleus and also for RNA export. Involved in chromatin condensation and control of cell cycle. Arabidopsis thaliana (taxid: 3702) |
| >sp|P41919|RANB1_TOBAC GTP-binding nuclear protein Ran-B1 OS=Nicotiana tabacum GN=RAN-B1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 366 bits (940), Expect = e-101, Method: Compositional matrix adjust.
Identities = 172/176 (97%), Positives = 174/176 (98%)
Query: 1 MALPSQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG 60
MALP+QQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG
Sbjct: 1 MALPNQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG 60
Query: 61 KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI 120
KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI
Sbjct: 61 KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI 120
Query: 121 VLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGSTD 176
VLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAG +
Sbjct: 121 VLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDAN 176
|
GTP-binding protein involved in nucleocytoplasmic transport. Required for the import of protein into the nucleus and also for RNA export. Involved in chromatin condensation and control of cell cycle. Nicotiana tabacum (taxid: 4097) |
| >sp|P41917|RAN2_ARATH GTP-binding nuclear protein Ran-2 OS=Arabidopsis thaliana GN=RAN2 PE=1 SV=3 | Back alignment and function description |
|---|
Score = 366 bits (939), Expect = e-101, Method: Compositional matrix adjust.
Identities = 172/176 (97%), Positives = 174/176 (98%)
Query: 1 MALPSQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG 60
MALP+QQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG
Sbjct: 1 MALPNQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG 60
Query: 61 KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI 120
KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI
Sbjct: 61 KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI 120
Query: 121 VLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGSTD 176
VLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAG +
Sbjct: 121 VLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDQN 176
|
GTP-binding protein involved in nucleocytoplasmic transport. Required for the import of protein into the nucleus and also for RNA export. Involved in chromatin condensation and control of cell cycle. Arabidopsis thaliana (taxid: 3702) |
| >sp|P38548|RAN_VICFA GTP-binding nuclear protein Ran/TC4 OS=Vicia faba PE=2 SV=1 | Back alignment and function description |
|---|
Score = 365 bits (938), Expect = e-101, Method: Compositional matrix adjust.
Identities = 172/176 (97%), Positives = 174/176 (98%)
Query: 1 MALPSQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG 60
MALP+QQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG
Sbjct: 1 MALPNQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG 60
Query: 61 KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI 120
KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI
Sbjct: 61 KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI 120
Query: 121 VLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGSTD 176
VLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAG +
Sbjct: 121 VLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDAN 176
|
GTP-binding protein involved in nucleocytoplasmic transport. Required for the import of protein into the nucleus and also for RNA export. Involved in chromatin condensation and control of cell cycle. Vicia faba (taxid: 3906) |
| >sp|P41916|RAN1_ARATH GTP-binding nuclear protein Ran-1 OS=Arabidopsis thaliana GN=RAN1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 365 bits (937), Expect = e-101, Method: Compositional matrix adjust.
Identities = 172/176 (97%), Positives = 174/176 (98%)
Query: 1 MALPSQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG 60
MALP+QQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG
Sbjct: 1 MALPNQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG 60
Query: 61 KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI 120
KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI
Sbjct: 61 KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI 120
Query: 121 VLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGSTD 176
VLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAG +
Sbjct: 121 VLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDQN 176
|
GTP-binding protein involved in nucleocytoplasmic transport. Required for the import of protein into the nucleus and also for RNA export. Involved in chromatin condensation and control of cell cycle. Arabidopsis thaliana (taxid: 3702) |
| >sp|P38546|RAN1_SOLLC GTP-binding nuclear protein Ran1 OS=Solanum lycopersicum GN=RAN1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 365 bits (936), Expect = e-100, Method: Compositional matrix adjust.
Identities = 172/174 (98%), Positives = 173/174 (99%)
Query: 1 MALPSQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG 60
MALP+QQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG
Sbjct: 1 MALPNQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG 60
Query: 61 KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI 120
KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI
Sbjct: 61 KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI 120
Query: 121 VLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGS 174
VLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAG
Sbjct: 121 VLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGD 174
|
GTP-binding protein involved in nucleocytoplasmic transport. Required for the import of protein into the nucleus and also for RNA export. Involved in chromatin condensation and control of cell cycle. Solanum lycopersicum (taxid: 4081) |
| >sp|P38547|RAN2_SOLLC GTP-binding nuclear protein Ran2 OS=Solanum lycopersicum GN=RAN2 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 365 bits (936), Expect = e-100, Method: Compositional matrix adjust.
Identities = 172/174 (98%), Positives = 173/174 (99%)
Query: 1 MALPSQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG 60
MALP+QQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG
Sbjct: 1 MALPNQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG 60
Query: 61 KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI 120
KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI
Sbjct: 61 KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI 120
Query: 121 VLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGS 174
VLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAG
Sbjct: 121 VLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGD 174
|
GTP-binding protein involved in nucleocytoplasmic transport. Required for the import of protein into the nucleus and also for RNA export. Involved in chromatin condensation and control of cell cycle. Solanum lycopersicum (taxid: 4081) |
| >sp|P41918|RANA1_TOBAC GTP-binding nuclear protein Ran-A1 OS=Nicotiana tabacum GN=RAN-A1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 363 bits (933), Expect = e-100, Method: Compositional matrix adjust.
Identities = 171/176 (97%), Positives = 172/176 (97%)
Query: 1 MALPSQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG 60
MALP QQ VDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG
Sbjct: 1 MALPGQQAVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG 60
Query: 61 KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI 120
KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI
Sbjct: 61 KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI 120
Query: 121 VLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGSTD 176
VLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAG +
Sbjct: 121 VLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPN 176
|
GTP-binding protein involved in nucleocytoplasmic transport. Required for the import of protein into the nucleus and also for RNA export. Involved in chromatin condensation and control of cell cycle. Nicotiana tabacum (taxid: 4097) |
| >sp|Q7F7I7|RAN1_ORYSJ GTP-binding nuclear protein Ran-1 OS=Oryza sativa subsp. japonica GN=RAN1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 363 bits (933), Expect = e-100, Method: Compositional matrix adjust.
Identities = 170/174 (97%), Positives = 173/174 (99%)
Query: 1 MALPSQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG 60
MALP+QQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG
Sbjct: 1 MALPNQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG 60
Query: 61 KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI 120
KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVT+RLTYKNVPTWHRDLCRVCENIPI
Sbjct: 61 KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTSRLTYKNVPTWHRDLCRVCENIPI 120
Query: 121 VLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGS 174
VLCGNKVDVKNRQVKAKQVTFHRKKNLQYYE+SAKSNYNFEKPFLYLARKLAG
Sbjct: 121 VLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEVSAKSNYNFEKPFLYLARKLAGD 174
|
GTP-binding protein involved in nucleocytoplasmic transport. Required for the import of protein into the nucleus and also for RNA export. Involved in chromatin condensation and control of cell cycle. Oryza sativa subsp. japonica (taxid: 39947) |
| >sp|A2WSI7|RAN1_ORYSI GTP-binding nuclear protein Ran-1 OS=Oryza sativa subsp. indica GN=RAN1 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 363 bits (933), Expect = e-100, Method: Compositional matrix adjust.
Identities = 170/174 (97%), Positives = 173/174 (99%)
Query: 1 MALPSQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG 60
MALP+QQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG
Sbjct: 1 MALPNQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG 60
Query: 61 KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI 120
KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVT+RLTYKNVPTWHRDLCRVCENIPI
Sbjct: 61 KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTSRLTYKNVPTWHRDLCRVCENIPI 120
Query: 121 VLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGS 174
VLCGNKVDVKNRQVKAKQVTFHRKKNLQYYE+SAKSNYNFEKPFLYLARKLAG
Sbjct: 121 VLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEVSAKSNYNFEKPFLYLARKLAGD 174
|
GTP-binding protein involved in nucleocytoplasmic transport. Required for the import of protein into the nucleus and also for RNA export. Involved in chromatin condensation and control of cell cycle. Oryza sativa subsp. indica (taxid: 39946) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 176 | ||||||
| 297743387 | 267 | unnamed protein product [Vitis vinifera] | 1.0 | 0.659 | 0.977 | 1e-100 | |
| 356507750 | 221 | PREDICTED: GTP-binding nuclear protein R | 1.0 | 0.796 | 0.982 | 1e-100 | |
| 341218174 | 221 | ran [Lepidium latifolium] | 1.0 | 0.796 | 0.982 | 1e-100 | |
| 125526819 | 442 | hypothetical protein OsI_02827 [Oryza sa | 0.982 | 0.391 | 0.976 | 1e-99 | |
| 297738907 | 260 | unnamed protein product [Vitis vinifera] | 1.0 | 0.676 | 0.977 | 1e-99 | |
| 225442825 | 221 | PREDICTED: GTP-binding nuclear protein R | 1.0 | 0.796 | 0.977 | 1e-99 | |
| 15240474 | 221 | GTP-binding nuclear protein Ran-3 [Arabi | 1.0 | 0.796 | 0.977 | 1e-99 | |
| 87046109 | 221 | putative RAN2 small Ras GTP-binding nucl | 1.0 | 0.796 | 0.977 | 2e-99 | |
| 297792995 | 221 | hypothetical protein ARALYDRAFT_918663 [ | 1.0 | 0.796 | 0.977 | 2e-99 | |
| 1172836 | 221 | RecName: Full=GTP-binding nuclear protei | 1.0 | 0.796 | 0.977 | 2e-99 |
| >gi|297743387|emb|CBI36254.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 370 bits (950), Expect = e-100, Method: Compositional matrix adjust.
Identities = 172/176 (97%), Positives = 174/176 (98%)
Query: 1 MALPSQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG 60
MALP+QQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG
Sbjct: 47 MALPNQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG 106
Query: 61 KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI 120
KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI
Sbjct: 107 KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI 166
Query: 121 VLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGSTD 176
VLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAG +
Sbjct: 167 VLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDAN 222
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356507750|ref|XP_003522627.1| PREDICTED: GTP-binding nuclear protein Ran-3-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 368 bits (944), Expect = e-100, Method: Compositional matrix adjust.
Identities = 173/176 (98%), Positives = 175/176 (99%)
Query: 1 MALPSQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG 60
MALP+QQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG
Sbjct: 1 MALPNQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG 60
Query: 61 KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI 120
KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI
Sbjct: 61 KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI 120
Query: 121 VLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGSTD 176
VLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAG T+
Sbjct: 121 VLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDTN 176
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|341218174|gb|AEK78856.1| ran [Lepidium latifolium] | Back alignment and taxonomy information |
|---|
Score = 367 bits (943), Expect = e-100, Method: Compositional matrix adjust.
Identities = 173/176 (98%), Positives = 175/176 (99%)
Query: 1 MALPSQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG 60
MALP+QQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG
Sbjct: 1 MALPNQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG 60
Query: 61 KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI 120
KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI
Sbjct: 61 KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI 120
Query: 121 VLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGSTD 176
VLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAG T+
Sbjct: 121 VLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDTN 176
|
Source: Lepidium latifolium Species: Lepidium latifolium Genus: Lepidium Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|125526819|gb|EAY74933.1| hypothetical protein OsI_02827 [Oryza sativa Indica Group] | Back alignment and taxonomy information |
|---|
Score = 367 bits (942), Expect = 1e-99, Method: Compositional matrix adjust.
Identities = 169/173 (97%), Positives = 172/173 (99%)
Query: 2 ALPSQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGK 61
ALP+QQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGK
Sbjct: 223 ALPNQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGK 282
Query: 62 IRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIV 121
IRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVT+RLTYKNVPTWHRDLCRVCENIPIV
Sbjct: 283 IRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTSRLTYKNVPTWHRDLCRVCENIPIV 342
Query: 122 LCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGS 174
LCGNKVDVKNRQVKAKQVTFHRKKNLQYYE+SAKSNYNFEKPFLYLARKLAG
Sbjct: 343 LCGNKVDVKNRQVKAKQVTFHRKKNLQYYEVSAKSNYNFEKPFLYLARKLAGD 395
|
Source: Oryza sativa Indica Group Species: Oryza sativa Genus: Oryza Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297738907|emb|CBI28152.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 367 bits (942), Expect = 1e-99, Method: Compositional matrix adjust.
Identities = 172/176 (97%), Positives = 174/176 (98%)
Query: 1 MALPSQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG 60
MALP+QQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG
Sbjct: 40 MALPNQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG 99
Query: 61 KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI 120
KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI
Sbjct: 100 KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI 159
Query: 121 VLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGSTD 176
VLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAG +
Sbjct: 160 VLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPN 215
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225442825|ref|XP_002285307.1| PREDICTED: GTP-binding nuclear protein Ran-3-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 367 bits (941), Expect = 1e-99, Method: Compositional matrix adjust.
Identities = 172/176 (97%), Positives = 174/176 (98%)
Query: 1 MALPSQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG 60
MALP+QQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG
Sbjct: 1 MALPNQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG 60
Query: 61 KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI 120
KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI
Sbjct: 61 KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI 120
Query: 121 VLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGSTD 176
VLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAG +
Sbjct: 121 VLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDAN 176
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|15240474|ref|NP_200330.1| GTP-binding nuclear protein Ran-3 [Arabidopsis thaliana] gi|76789666|sp|Q8H156.2|RAN3_ARATH RecName: Full=GTP-binding nuclear protein Ran-3; AltName: Full=Ras-related nuclear protein 3 gi|2149051|gb|AAB58478.1| small Ras-like GTP-binding protein [Arabidopsis thaliana] gi|9758116|dbj|BAB08588.1| small Ras-like GTP-binding protein [Arabidopsis thaliana] gi|14596017|gb|AAK68736.1| small Ras-like GTP-binding protein [Arabidopsis thaliana] gi|15215578|gb|AAK91334.1| AT5g55190/MCO15_14 [Arabidopsis thaliana] gi|21435991|gb|AAM51573.1| AT5g55190/MCO15_14 [Arabidopsis thaliana] gi|332009215|gb|AED96598.1| GTP-binding nuclear protein Ran-3 [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 367 bits (941), Expect = 1e-99, Method: Compositional matrix adjust.
Identities = 172/176 (97%), Positives = 174/176 (98%)
Query: 1 MALPSQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG 60
MALP+QQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG
Sbjct: 1 MALPNQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG 60
Query: 61 KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI 120
KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI
Sbjct: 61 KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI 120
Query: 121 VLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGSTD 176
VLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAG +
Sbjct: 121 VLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDAN 176
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|87046109|gb|ABD17864.1| putative RAN2 small Ras GTP-binding nuclear protein [Allium cepa] | Back alignment and taxonomy information |
|---|
Score = 366 bits (940), Expect = 2e-99, Method: Compositional matrix adjust.
Identities = 172/176 (97%), Positives = 174/176 (98%)
Query: 1 MALPSQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG 60
MALP+QQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG
Sbjct: 1 MALPNQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG 60
Query: 61 KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI 120
KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI
Sbjct: 61 KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI 120
Query: 121 VLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGSTD 176
VLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAG +
Sbjct: 121 VLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDQN 176
|
Source: Allium cepa Species: Allium cepa Genus: Allium Family: Amaryllidaceae Order: Asparagales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297792995|ref|XP_002864382.1| hypothetical protein ARALYDRAFT_918663 [Arabidopsis lyrata subsp. lyrata] gi|297310217|gb|EFH40641.1| hypothetical protein ARALYDRAFT_918663 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 366 bits (940), Expect = 2e-99, Method: Compositional matrix adjust.
Identities = 172/176 (97%), Positives = 174/176 (98%)
Query: 1 MALPSQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG 60
MALP+QQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG
Sbjct: 1 MALPNQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG 60
Query: 61 KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI 120
KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI
Sbjct: 61 KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI 120
Query: 121 VLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGSTD 176
VLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAG +
Sbjct: 121 VLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDAN 176
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|1172836|sp|P41919.1|RANB1_TOBAC RecName: Full=GTP-binding nuclear protein Ran-B1 gi|496272|gb|AAA34109.1| small ras-related protein [Nicotiana tabacum] | Back alignment and taxonomy information |
|---|
Score = 366 bits (940), Expect = 2e-99, Method: Compositional matrix adjust.
Identities = 172/176 (97%), Positives = 174/176 (98%)
Query: 1 MALPSQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG 60
MALP+QQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG
Sbjct: 1 MALPNQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG 60
Query: 61 KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI 120
KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI
Sbjct: 61 KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI 120
Query: 121 VLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGSTD 176
VLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAG +
Sbjct: 121 VLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDAN 176
|
Source: Nicotiana tabacum Species: Nicotiana tabacum Genus: Nicotiana Family: Solanaceae Order: Solanales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 176 | ||||||
| TAIR|locus:2161600 | 221 | RAN3 "RAN GTPase 3" [Arabidops | 1.0 | 0.796 | 0.977 | 1.1e-94 | |
| TAIR|locus:2147700 | 221 | RAN-1 "RAS-related nuclear pro | 0.982 | 0.782 | 0.994 | 1.4e-94 | |
| TAIR|locus:2147715 | 221 | RAN2 "RAS-related GTP-binding | 0.982 | 0.782 | 0.994 | 1.4e-94 | |
| SGD|S000005711 | 220 | GSP2 "GTP binding protein (mam | 0.988 | 0.790 | 0.816 | 1e-77 | |
| SGD|S000004284 | 219 | GSP1 "Ran GTPase" [Saccharomyc | 0.982 | 0.789 | 0.810 | 6.3e-76 | |
| WB|WBGene00004302 | 215 | ran-1 [Caenorhabditis elegans | 0.920 | 0.753 | 0.864 | 1.7e-75 | |
| UNIPROTKB|O17915 | 215 | ran-1 "GTP-binding nuclear pro | 0.920 | 0.753 | 0.864 | 1.7e-75 | |
| CGD|CAL0005360 | 214 | GSP1 [Candida albicans (taxid: | 0.937 | 0.771 | 0.824 | 1.2e-74 | |
| UNIPROTKB|Q59P43 | 214 | GSP1 "RAN-like GTP binding pro | 0.937 | 0.771 | 0.824 | 1.2e-74 | |
| FB|FBgn0020255 | 216 | Ran "Ran" [Drosophila melanoga | 0.960 | 0.782 | 0.804 | 1.5e-74 |
| TAIR|locus:2161600 RAN3 "RAN GTPase 3" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 942 (336.7 bits), Expect = 1.1e-94, P = 1.1e-94
Identities = 172/176 (97%), Positives = 174/176 (98%)
Query: 1 MALPSQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG 60
MALP+QQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG
Sbjct: 1 MALPNQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG 60
Query: 61 KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI 120
KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI
Sbjct: 61 KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI 120
Query: 121 VLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGSTD 176
VLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAG +
Sbjct: 121 VLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDAN 176
|
|
| TAIR|locus:2147700 RAN-1 "RAS-related nuclear protein-1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 941 (336.3 bits), Expect = 1.4e-94, P = 1.4e-94
Identities = 172/173 (99%), Positives = 173/173 (100%)
Query: 1 MALPSQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG 60
MALP+QQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG
Sbjct: 1 MALPNQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG 60
Query: 61 KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI 120
KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI
Sbjct: 61 KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI 120
Query: 121 VLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAG 173
VLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAG
Sbjct: 121 VLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAG 173
|
|
| TAIR|locus:2147715 RAN2 "RAS-related GTP-binding nuclear protein 2" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 941 (336.3 bits), Expect = 1.4e-94, P = 1.4e-94
Identities = 172/173 (99%), Positives = 173/173 (100%)
Query: 1 MALPSQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG 60
MALP+QQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG
Sbjct: 1 MALPNQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG 60
Query: 61 KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI 120
KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI
Sbjct: 61 KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI 120
Query: 121 VLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAG 173
VLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAG
Sbjct: 121 VLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAG 173
|
|
| SGD|S000005711 GSP2 "GTP binding protein (mammalian Ranp homolog)" [Saccharomyces cerevisiae (taxid:4932)] | Back alignment and assigned GO terms |
|---|
Score = 782 (280.3 bits), Expect = 1.0e-77, P = 1.0e-77
Identities = 142/174 (81%), Positives = 158/174 (90%)
Query: 1 MALPSQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG 60
M+ P+Q + P+FKLV+VGDGGTGKTTFVKRHLTGEFEKKY TIGVEVHPL F+TN G
Sbjct: 1 MSAPAQNNAEVPTFKLVLVGDGGTGKTTFVKRHLTGEFEKKYIATIGVEVHPLSFYTNFG 60
Query: 61 KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI 120
+I+F WDTAGQEKFGGLRDGYYI+ QCAIIMFDVT+R+TYKNVP WHRDL RVCENIPI
Sbjct: 61 EIKFDVWDTAGQEKFGGLRDGYYINAQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPI 120
Query: 121 VLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGS 174
VLCGNKVDVK R+VKAK +TFHRKKNLQYY+ISAKSNYNFEKPFL+LARKLAG+
Sbjct: 121 VLCGNKVDVKERKVKAKTITFHRKKNLQYYDISAKSNYNFEKPFLWLARKLAGN 174
|
|
| SGD|S000004284 GSP1 "Ran GTPase" [Saccharomyces cerevisiae (taxid:4932)] | Back alignment and assigned GO terms |
|---|
Score = 765 (274.4 bits), Expect = 6.3e-76, P = 6.3e-76
Identities = 141/174 (81%), Positives = 157/174 (90%)
Query: 1 MALPSQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG 60
M+ P+ + P+FKLV+VGDGGTGKTTFVKRHLTGEFEKKY TIGVEVHPL F+TN G
Sbjct: 1 MSAPAANG-EVPTFKLVLVGDGGTGKTTFVKRHLTGEFEKKYIATIGVEVHPLSFYTNFG 59
Query: 61 KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI 120
+I+F WDTAGQEKFGGLRDGYYI+ QCAIIMFDVT+R+TYKNVP WHRDL RVCENIPI
Sbjct: 60 EIKFDVWDTAGQEKFGGLRDGYYINAQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPI 119
Query: 121 VLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGS 174
VLCGNKVDVK R+VKAK +TFHRKKNLQYY+ISAKSNYNFEKPFL+LARKLAG+
Sbjct: 120 VLCGNKVDVKERKVKAKTITFHRKKNLQYYDISAKSNYNFEKPFLWLARKLAGN 173
|
|
| WB|WBGene00004302 ran-1 [Caenorhabditis elegans (taxid:6239)] | Back alignment and assigned GO terms |
|---|
Score = 761 (272.9 bits), Expect = 1.7e-75, P = 1.7e-75
Identities = 140/162 (86%), Positives = 150/162 (92%)
Query: 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAG 71
P+FKLV+VGDGGTGKTTFVKRHLTGEFEKKY T+GVEVHPL F TN G+IRF WDTAG
Sbjct: 8 PTFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGQIRFNVWDTAG 67
Query: 72 QEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKN 131
QEKFGGLRDGYYI GQCAIIMFDVTAR+TYKNVP WHRDL RVCENIPIVLCGNKVDVK+
Sbjct: 68 QEKFGGLRDGYYIQGQCAIIMFDVTARVTYKNVPNWHRDLARVCENIPIVLCGNKVDVKD 127
Query: 132 RQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAG 173
R+VKAK +TFHRKKNLQYY+ISAKSNYNFEKPFL+LARKL G
Sbjct: 128 RKVKAKTITFHRKKNLQYYDISAKSNYNFEKPFLWLARKLLG 169
|
|
| UNIPROTKB|O17915 ran-1 "GTP-binding nuclear protein ran-1" [Caenorhabditis elegans (taxid:6239)] | Back alignment and assigned GO terms |
|---|
Score = 761 (272.9 bits), Expect = 1.7e-75, P = 1.7e-75
Identities = 140/162 (86%), Positives = 150/162 (92%)
Query: 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAG 71
P+FKLV+VGDGGTGKTTFVKRHLTGEFEKKY T+GVEVHPL F TN G+IRF WDTAG
Sbjct: 8 PTFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGQIRFNVWDTAG 67
Query: 72 QEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKN 131
QEKFGGLRDGYYI GQCAIIMFDVTAR+TYKNVP WHRDL RVCENIPIVLCGNKVDVK+
Sbjct: 68 QEKFGGLRDGYYIQGQCAIIMFDVTARVTYKNVPNWHRDLARVCENIPIVLCGNKVDVKD 127
Query: 132 RQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAG 173
R+VKAK +TFHRKKNLQYY+ISAKSNYNFEKPFL+LARKL G
Sbjct: 128 RKVKAKTITFHRKKNLQYYDISAKSNYNFEKPFLWLARKLLG 169
|
|
| CGD|CAL0005360 GSP1 [Candida albicans (taxid:5476)] | Back alignment and assigned GO terms |
|---|
Score = 753 (270.1 bits), Expect = 1.2e-74, P = 1.2e-74
Identities = 136/165 (82%), Positives = 151/165 (91%)
Query: 10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDT 69
+ P+FKLV+VGDGGTGKTTFVKRHLTGEFEKKY T+GVEVHPL F TN G+++F WDT
Sbjct: 4 EVPTFKLVLVGDGGTGKTTFVKRHLTGEFEKKYIATLGVEVHPLGFHTNFGELKFDVWDT 63
Query: 70 AGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDV 129
AGQEKFGGLRDGYYI+GQC IIMFDVT+R+TYKNVP WHRDL RVCENIPIVLCGNKVDV
Sbjct: 64 AGQEKFGGLRDGYYINGQCGIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDV 123
Query: 130 KNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGS 174
K R+VKAK +TFHRKKNLQYY+ISAKSNYNFEKPFL+LARKL G+
Sbjct: 124 KERKVKAKTITFHRKKNLQYYDISAKSNYNFEKPFLWLARKLVGN 168
|
|
| UNIPROTKB|Q59P43 GSP1 "RAN-like GTP binding protein" [Candida albicans SC5314 (taxid:237561)] | Back alignment and assigned GO terms |
|---|
Score = 753 (270.1 bits), Expect = 1.2e-74, P = 1.2e-74
Identities = 136/165 (82%), Positives = 151/165 (91%)
Query: 10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDT 69
+ P+FKLV+VGDGGTGKTTFVKRHLTGEFEKKY T+GVEVHPL F TN G+++F WDT
Sbjct: 4 EVPTFKLVLVGDGGTGKTTFVKRHLTGEFEKKYIATLGVEVHPLGFHTNFGELKFDVWDT 63
Query: 70 AGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDV 129
AGQEKFGGLRDGYYI+GQC IIMFDVT+R+TYKNVP WHRDL RVCENIPIVLCGNKVDV
Sbjct: 64 AGQEKFGGLRDGYYINGQCGIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDV 123
Query: 130 KNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGS 174
K R+VKAK +TFHRKKNLQYY+ISAKSNYNFEKPFL+LARKL G+
Sbjct: 124 KERKVKAKTITFHRKKNLQYYDISAKSNYNFEKPFLWLARKLVGN 168
|
|
| FB|FBgn0020255 Ran "Ran" [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 752 (269.8 bits), Expect = 1.5e-74, P = 1.5e-74
Identities = 136/169 (80%), Positives = 151/169 (89%)
Query: 5 SQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRF 64
+Q+ D P+FK V+VGDGGTGKTTFVKRH+TGEFEKKY T+GVEVHPL F TN G IRF
Sbjct: 2 AQEGQDIPTFKCVLVGDGGTGKTTFVKRHMTGEFEKKYVATLGVEVHPLIFHTNRGAIRF 61
Query: 65 YCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCG 124
WDTAGQEKFGGLRDGYYI GQCA+IMFDVT+R+TYKNVP WHRDL RVCENIPIVLCG
Sbjct: 62 NVWDTAGQEKFGGLRDGYYIQGQCAVIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCG 121
Query: 125 NKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAG 173
NKVD+K+R+VKAK + FHRKKNLQYY+ISAKSNYNFEKPFL+LARKL G
Sbjct: 122 NKVDIKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLVG 170
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q3T054 | RAN_BOVIN | No assigned EC number | 0.8170 | 0.9318 | 0.7592 | yes | no |
| A2WSI7 | RAN1_ORYSI | No assigned EC number | 0.9770 | 0.9886 | 0.7873 | N/A | no |
| P54766 | RAN1B_LOTJA | No assigned EC number | 0.9756 | 0.9318 | 0.7846 | N/A | no |
| P54765 | RAN1A_LOTJA | No assigned EC number | 0.9756 | 0.9318 | 0.7846 | N/A | no |
| P41917 | RAN2_ARATH | No assigned EC number | 0.9772 | 1.0 | 0.7963 | yes | no |
| P41916 | RAN1_ARATH | No assigned EC number | 0.9772 | 1.0 | 0.7963 | yes | no |
| P38546 | RAN1_SOLLC | No assigned EC number | 0.9885 | 0.9886 | 0.7873 | N/A | no |
| P38547 | RAN2_SOLLC | No assigned EC number | 0.9885 | 0.9886 | 0.7873 | N/A | no |
| P38542 | RAN_BRUMA | No assigned EC number | 0.8443 | 0.9488 | 0.7767 | N/A | no |
| Q7F7I7 | RAN1_ORYSJ | No assigned EC number | 0.9770 | 0.9886 | 0.7873 | yes | no |
| Q9VZ23 | RAN_DROME | No assigned EC number | 0.7906 | 0.9772 | 0.7962 | yes | no |
| P38548 | RAN_VICFA | No assigned EC number | 0.9772 | 1.0 | 0.7963 | N/A | no |
| P41919 | RANB1_TOBAC | No assigned EC number | 0.9772 | 1.0 | 0.7963 | N/A | no |
| P41918 | RANA1_TOBAC | No assigned EC number | 0.9715 | 1.0 | 0.7963 | N/A | no |
| A2YEQ6 | RAN3_ORYSI | No assigned EC number | 0.8514 | 0.9943 | 0.7743 | N/A | no |
| A2Y7R5 | RAN2_ORYSI | No assigned EC number | 0.9602 | 1.0 | 0.7963 | N/A | no |
| Q6FR65 | GSP1_CANGA | No assigned EC number | 0.8263 | 0.9488 | 0.7803 | yes | no |
| Q4R4M9 | RAN_MACFA | No assigned EC number | 0.8170 | 0.9318 | 0.7592 | N/A | no |
| Q7GD79 | RAN2_ORYSJ | No assigned EC number | 0.9602 | 1.0 | 0.7963 | yes | no |
| Q74ZA9 | GSP1_ASHGO | No assigned EC number | 0.8263 | 0.9488 | 0.7803 | yes | no |
| P62827 | RAN_MOUSE | No assigned EC number | 0.8170 | 0.9318 | 0.7592 | yes | no |
| P38544 | RAN_ONCVO | No assigned EC number | 0.8143 | 0.9488 | 0.7767 | N/A | no |
| P52301 | RAN_XENLA | No assigned EC number | 0.8170 | 0.9318 | 0.7592 | N/A | no |
| P28748 | SPI1_SCHPO | No assigned EC number | 0.8 | 0.9659 | 0.7870 | yes | no |
| P32836 | GSP2_YEAST | No assigned EC number | 0.8160 | 0.9886 | 0.7909 | yes | no |
| P32835 | GSP1_YEAST | No assigned EC number | 0.8103 | 0.9829 | 0.7899 | yes | no |
| Q7RVL0 | GSP1_NEUCR | No assigned EC number | 0.8404 | 0.9261 | 0.7581 | N/A | no |
| Q7ZZX9 | RAN_CARAU | No assigned EC number | 0.8109 | 0.9318 | 0.7627 | N/A | no |
| P62828 | RAN_RAT | No assigned EC number | 0.8170 | 0.9318 | 0.7592 | yes | no |
| Q5R556 | RAN_PONAB | No assigned EC number | 0.8170 | 0.9318 | 0.7592 | yes | no |
| P79735 | RAN_DANRE | No assigned EC number | 0.8109 | 0.9318 | 0.7627 | yes | no |
| P62825 | RAN_CANFA | No assigned EC number | 0.8170 | 0.9318 | 0.7592 | yes | no |
| P62826 | RAN_HUMAN | No assigned EC number | 0.8170 | 0.9318 | 0.7592 | yes | no |
| O17915 | RAN_CAEEL | No assigned EC number | 0.8484 | 0.9375 | 0.7674 | yes | no |
| Q9P4E9 | GSP1_CANAW | No assigned EC number | 0.8242 | 0.9375 | 0.7710 | N/A | no |
| Q9YGC0 | RAN_SALSA | No assigned EC number | 0.8109 | 0.9318 | 0.7627 | N/A | no |
| Q8H156 | RAN3_ARATH | No assigned EC number | 0.9772 | 1.0 | 0.7963 | yes | no |
| P33519 | RAN_DICDI | No assigned EC number | 0.7515 | 0.9147 | 0.7594 | yes | no |
| Q8TFK3 | GSP1_YARLI | No assigned EC number | 0.8271 | 0.9204 | 0.7570 | yes | no |
| P42558 | RAN_CHICK | No assigned EC number | 0.8170 | 0.9318 | 0.7592 | yes | no |
| P38545 | RAN_PLAFA | No assigned EC number | 0.7126 | 0.9772 | 0.8037 | yes | no |
| Q6GL85 | RAN_XENTR | No assigned EC number | 0.8170 | 0.9318 | 0.7592 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
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 | GSVIVG00034551001 | SubName- Full=Chromosome chr9 scaffold_7, whole genome shotgun sequence; (267 aa) | |||||||||
(Vitis vinifera) | |||||||||||
Predicted Functional Partners: | |||||||||||
 | GSVIVG00014046001 | SubName- Full=Putative uncharacterized protein (Chromosome chr16 scaffold_10, whole genome shot [...] (1076 aa) | • | • | • | 0.824 | |||||
 | GSVIVG00034073001 | SubName- Full=Chromosome chr9 scaffold_7, whole genome shotgun sequence; (992 aa) | • | 0.800 | |||||||
 | GSVIVG00031073001 | SubName- Full=Chromosome chr14 scaffold_54, whole genome shotgun sequence; (1207 aa) | • | 0.800 | |||||||
 | GSVIVG00026673001 | SubName- Full=Chromosome chr4 scaffold_39, whole genome shotgun sequence; (504 aa) | • | 0.800 | |||||||
 | GSVIVG00025621001 | SubName- Full=Chromosome chr8 scaffold_34, whole genome shotgun sequence; (483 aa) | • | 0.800 | |||||||
 | GSVIVG00023150001 | RecName- Full=Elongation factor 1-alpha;; This protein promotes the GTP-dependent binding of am [...] (399 aa) | • | 0.800 | |||||||
 | GSVIVG00022233001 | SubName- Full=Chromosome chr6 scaffold_25, whole genome shotgun sequence; (812 aa) | • | 0.800 | |||||||
 | GSVIVG00018636001 | SubName- Full=Chromosome chr12 scaffold_18, whole genome shotgun sequence; (144 aa) | • | 0.800 | |||||||
 | GSVIVG00018233001 | RecName- Full=Elongation factor 1-alpha;; This protein promotes the GTP-dependent binding of am [...] (399 aa) | • | 0.800 | |||||||
 | GSVIVG00034710001 | SubName- Full=Chromosome chr5 scaffold_72, whole genome shotgun sequence; (81 aa) | • | 0.496 | |||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 176 | |||
| PLN03071 | 219 | PLN03071, PLN03071, GTP-binding nuclear protein Ra | 1e-150 | |
| PTZ00132 | 215 | PTZ00132, PTZ00132, GTP-binding nuclear protein Ra | 1e-132 | |
| cd00877 | 166 | cd00877, Ran, Ras-related nuclear proteins (Ran)/T | 1e-126 | |
| smart00176 | 200 | smart00176, RAN, Ran (Ras-related nuclear proteins | 1e-121 | |
| pfam00071 | 162 | pfam00071, Ras, Ras family | 4e-65 | |
| cd00154 | 159 | cd00154, Rab, Ras-related in brain (Rab) family of | 1e-50 | |
| smart00175 | 164 | smart00175, RAB, Rab subfamily of small GTPases | 9e-42 | |
| COG1100 | 219 | COG1100, COG1100, GTPase SAR1 and related small G | 7e-39 | |
| cd04106 | 162 | cd04106, Rab23_like, Rab GTPase family 23 (Rab23)- | 3e-36 | |
| cd00876 | 160 | cd00876, Ras, Rat sarcoma (Ras) family of small gu | 7e-35 | |
| cd01860 | 163 | cd01860, Rab5_related, Rab-related GTPase family i | 2e-34 | |
| cd01863 | 161 | cd01863, Rab18, Rab GTPase family 18 (Rab18) | 2e-31 | |
| cd01868 | 165 | cd01868, Rab11_like, Rab GTPase family 11 (Rab11)- | 5e-31 | |
| smart00173 | 164 | smart00173, RAS, Ras subfamily of RAS small GTPase | 9e-31 | |
| cd01861 | 161 | cd01861, Rab6, Rab GTPase family 6 (Rab6) | 1e-30 | |
| smart00010 | 166 | smart00010, small_GTPase, Small GTPase of the Ras | 2e-30 | |
| cd01864 | 165 | cd01864, Rab19, Rab GTPase family 19 (Rab19) | 2e-30 | |
| cd04123 | 162 | cd04123, Rab21, Rab GTPase family 21 (Rab21) | 4e-30 | |
| cd04107 | 201 | cd04107, Rab32_Rab38, Rab GTPase families 18 (Rab1 | 4e-30 | |
| cd01862 | 172 | cd01862, Rab7, Rab GTPase family 7 (Rab7) | 1e-29 | |
| cd04145 | 164 | cd04145, M_R_Ras_like, R-Ras2/TC21, M-Ras/R-Ras3 | 5e-28 | |
| cd01867 | 167 | cd01867, Rab8_Rab10_Rab13_like, Rab GTPase familie | 1e-27 | |
| cd01866 | 168 | cd01866, Rab2, Rab GTPase family 2 (Rab2) | 2e-27 | |
| cd04113 | 161 | cd04113, Rab4, Rab GTPase family 4 (Rab4) | 8e-27 | |
| cd01869 | 166 | cd01869, Rab1_Ypt1, Rab GTPase family 1 includes t | 1e-26 | |
| cd04127 | 180 | cd04127, Rab27A, Rab GTPase family 27a (Rab27a) | 6e-26 | |
| cd04122 | 166 | cd04122, Rab14, Rab GTPase family 14 (Rab14) | 6e-26 | |
| cd04124 | 161 | cd04124, RabL2, Rab GTPase-like family 2 (Rab-like | 1e-25 | |
| cd04116 | 170 | cd04116, Rab9, Rab GTPase family 9 (Rab9) | 1e-25 | |
| cd00882 | 161 | cd00882, Ras_like_GTPase, Rat sarcoma (Ras)-like s | 1e-25 | |
| cd04114 | 169 | cd04114, Rab30, Rab GTPase family 30 (Rab30) | 1e-25 | |
| cd04138 | 162 | cd04138, H_N_K_Ras_like, Ras GTPase family contain | 7e-25 | |
| PLN03110 | 216 | PLN03110, PLN03110, Rab GTPase; Provisional | 9e-25 | |
| cd04110 | 199 | cd04110, Rab35, Rab GTPase family 35 (Rab35) | 2e-24 | |
| cd04175 | 164 | cd04175, Rap1, Rap1 family GTPase consists of Rap1 | 2e-24 | |
| cd00157 | 171 | cd00157, Rho, Ras homology family (Rho) of small g | 3e-24 | |
| cd04111 | 211 | cd04111, Rab39, Rab GTPase family 39 (Rab39) | 6e-24 | |
| cd04132 | 197 | cd04132, Rho4_like, Ras homology family 4 (Rho4) o | 9e-24 | |
| cd04115 | 170 | cd04115, Rab33B_Rab33A, Rab GTPase family 33 inclu | 1e-23 | |
| PLN03118 | 211 | PLN03118, PLN03118, Rab family protein; Provisiona | 2e-23 | |
| cd04176 | 163 | cd04176, Rap2, Rap2 family GTPase consists of Rap2 | 2e-23 | |
| cd04117 | 164 | cd04117, Rab15, Rab GTPase family 15 (Rab15) | 1e-22 | |
| cd04139 | 163 | cd04139, RalA_RalB, Ral (Ras-like) family containi | 4e-22 | |
| PLN03108 | 210 | PLN03108, PLN03108, Rab family protein; Provisiona | 6e-22 | |
| cd04134 | 185 | cd04134, Rho3, Ras homology family 3 (Rho3) of sma | 6e-22 | |
| cd04112 | 191 | cd04112, Rab26, Rab GTPase family 26 (Rab26) | 1e-21 | |
| TIGR00231 | 162 | TIGR00231, small_GTP, small GTP-binding protein do | 1e-21 | |
| cd04136 | 164 | cd04136, Rap_like, Rap-like family consists of Rap | 1e-21 | |
| smart00174 | 174 | smart00174, RHO, Rho (Ras homology) subfamily of R | 4e-21 | |
| cd01865 | 165 | cd01865, Rab3, Rab GTPase family 3 contains Rab3A, | 4e-21 | |
| cd04120 | 202 | cd04120, Rab12, Rab GTPase family 12 (Rab12) | 2e-20 | |
| PTZ00369 | 189 | PTZ00369, PTZ00369, Ras-like protein; Provisional | 2e-20 | |
| cd04119 | 168 | cd04119, RJL, Rab GTPase family J-like (RabJ-like) | 4e-20 | |
| cd04109 | 213 | cd04109, Rab28, Rab GTPase family 28 (Rab28) | 1e-19 | |
| cd04177 | 168 | cd04177, RSR1, RSR1/Bud1p family GTPase | 2e-19 | |
| cd04144 | 190 | cd04144, Ras2, Rat sarcoma (Ras) family 2 of small | 3e-19 | |
| cd04101 | 167 | cd04101, RabL4, Rab GTPase-like family 4 (Rab-like | 1e-18 | |
| cd04129 | 190 | cd04129, Rho2, Ras homology family 2 (Rho2) of sma | 2e-18 | |
| cd01875 | 191 | cd01875, RhoG, Ras homolog family, member G (RhoG) | 2e-18 | |
| PTZ00099 | 176 | PTZ00099, PTZ00099, rab6; Provisional | 3e-18 | |
| cd04108 | 170 | cd04108, Rab36_Rab34, Rab GTPase families 34 (Rab3 | 9e-18 | |
| cd04143 | 247 | cd04143, Rhes_like, Ras homolog enriched in striat | 1e-17 | |
| cd04141 | 172 | cd04141, Rit_Rin_Ric, Ras-like protein in all tiss | 3e-17 | |
| cd04121 | 189 | cd04121, Rab40, Rab GTPase family 40 (Rab40) conta | 5e-17 | |
| cd01870 | 175 | cd01870, RhoA_like, Ras homology family A (RhoA)-l | 6e-17 | |
| cd04147 | 197 | cd04147, Ras_dva, Ras - dorsal-ventral anterior lo | 3e-16 | |
| cd04118 | 193 | cd04118, Rab24, Rab GTPase family 24 (Rab24) | 1e-15 | |
| pfam08477 | 116 | pfam08477, Miro, Miro-like protein | 2e-15 | |
| cd04140 | 165 | cd04140, ARHI_like, A Ras homolog member I (ARHI) | 4e-15 | |
| cd01871 | 174 | cd01871, Rac1_like, Ras-related C3 botulinum toxin | 1e-14 | |
| cd04131 | 176 | cd04131, Rnd, Rho family GTPase subfamily Rnd incl | 2e-14 | |
| cd04137 | 180 | cd04137, RheB, Ras Homolog Enriched in Brain (RheB | 3e-14 | |
| cd04130 | 173 | cd04130, Wrch_1, Wnt-1 responsive Cdc42 homolog (W | 7e-14 | |
| cd01874 | 175 | cd01874, Cdc42, cell division cycle 42 (Cdc42) is | 1e-12 | |
| cd04133 | 173 | cd04133, Rop_like, Rho-related protein from plants | 2e-12 | |
| cd00878 | 158 | cd00878, Arf_Arl, ADP-ribosylation factor(Arf)/Arf | 4e-12 | |
| cd04172 | 182 | cd04172, Rnd3_RhoE_Rho8, Rnd3/RhoE/Rho8 GTPases | 2e-11 | |
| cd09914 | 161 | cd09914, RocCOR, Ras of complex proteins (Roc) C-t | 2e-11 | |
| cd04128 | 182 | cd04128, Spg1, Septum-promoting GTPase (Spg1) | 6e-11 | |
| cd04135 | 174 | cd04135, Tc10, Rho GTPase TC10 (Tc10) | 1e-10 | |
| cd04126 | 220 | cd04126, Rab20, Rab GTPase family 20 (Rab20) | 2e-10 | |
| cd04159 | 159 | cd04159, Arl10_like, Arf-like 9 (Arl9) and 10 (Arl | 2e-10 | |
| cd04146 | 166 | cd04146, RERG_RasL11_like, Ras-related and Estroge | 3e-10 | |
| cd04153 | 174 | cd04153, Arl5_Arl8, Arf-like 5 (Arl5) and 8 (Arl8) | 2e-08 | |
| cd04173 | 221 | cd04173, Rnd2_Rho7, Rnd2/Rho7 GTPases | 3e-08 | |
| cd04160 | 168 | cd04160, Arfrp1, Arf-related protein 1 (Arfrp1) | 6e-07 | |
| cd04148 | 219 | cd04148, RGK, Rem, Rem2, Rad, Gem/Kir (RGK) subfam | 9e-07 | |
| cd04142 | 198 | cd04142, RRP22, Ras-related protein on chromosome | 5e-06 | |
| pfam00025 | 174 | pfam00025, Arf, ADP-ribosylation factor family | 5e-06 | |
| cd04174 | 232 | cd04174, Rnd1_Rho6, Rnd1/Rho6 GTPases | 7e-06 | |
| cd04158 | 169 | cd04158, ARD1, (ADP-ribosylation factor domain pro | 1e-05 | |
| cd01893 | 168 | cd01893, Miro1, Mitochondrial Rho family 1 (Miro1) | 2e-05 | |
| cd04157 | 162 | cd04157, Arl6, Arf-like 6 (Arl6) GTPase | 4e-05 | |
| PLN00023 | 334 | PLN00023, PLN00023, GTP-binding protein; Provision | 1e-04 | |
| smart00177 | 175 | smart00177, ARF, ARF-like small GTPases; ARF, ADP- | 3e-04 | |
| PLN00223 | 181 | PLN00223, PLN00223, ADP-ribosylation factor; Provi | 5e-04 | |
| cd04103 | 158 | cd04103, Centaurin_gamma, Centaurin gamma (CENTG) | 6e-04 | |
| PTZ00133 | 182 | PTZ00133, PTZ00133, ADP-ribosylation factor; Provi | 0.002 | |
| cd04150 | 159 | cd04150, Arf1_5_like, ADP-ribosylation factor-1 (A | 0.003 |
| >gnl|CDD|178620 PLN03071, PLN03071, GTP-binding nuclear protein Ran; Provisional | Back alignment and domain information |
|---|
Score = 413 bits (1064), Expect = e-150
Identities = 172/176 (97%), Positives = 174/176 (98%)
Query: 1 MALPSQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG 60
MALP+QQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG
Sbjct: 1 MALPNQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG 60
Query: 61 KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI 120
KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI
Sbjct: 61 KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI 120
Query: 121 VLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGSTD 176
VLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAG +
Sbjct: 121 VLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPN 176
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Length = 219 |
| >gnl|CDD|240284 PTZ00132, PTZ00132, GTP-binding nuclear protein Ran; Provisional | Back alignment and domain information |
|---|
Score = 367 bits (945), Expect = e-132
Identities = 137/168 (81%), Positives = 151/168 (89%)
Query: 6 QQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFY 65
QQ + P FKL++VGDGG GKTTFVKRHLTGEFEKKY PT+GVEVHPL F+TNCG I F
Sbjct: 2 QQMDEVPEFKLILVGDGGVGKTTFVKRHLTGEFEKKYIPTLGVEVHPLKFYTNCGPICFN 61
Query: 66 CWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGN 125
WDTAGQEKFGGLRDGYYI GQCAIIMFDVT+R+TYKNVP WHRD+ RVCENIPIVL GN
Sbjct: 62 VWDTAGQEKFGGLRDGYYIKGQCAIIMFDVTSRITYKNVPNWHRDIVRVCENIPIVLVGN 121
Query: 126 KVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAG 173
KVDVK+RQVKA+Q+TFHRKKNLQYY+ISAKSNYNFEKPFL+LAR+L
Sbjct: 122 KVDVKDRQVKARQITFHRKKNLQYYDISAKSNYNFEKPFLWLARRLTN 169
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Length = 215 |
| >gnl|CDD|206643 cd00877, Ran, Ras-related nuclear proteins (Ran)/TC4 family of small GTPases | Back alignment and domain information |
|---|
Score = 350 bits (901), Expect = e-126
Identities = 140/163 (85%), Positives = 151/163 (92%)
Query: 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
FKLV+VGDGGTGKTTFVKRHLTGEFEKKY T+GVEVHPLDF TN GKIRF WDTAGQE
Sbjct: 1 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLDFHTNRGKIRFNVWDTAGQE 60
Query: 74 KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQ 133
KFGGLRDGYYI GQCAIIMFDVT+R+TYKNVP WHRDL RVCENIPIVLCGNKVD+K+R+
Sbjct: 61 KFGGLRDGYYIQGQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRK 120
Query: 134 VKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGSTD 176
VK KQ+TFHRKKNLQYYEISAKSNYNFEKPFL+LARKL G+ +
Sbjct: 121 VKPKQITFHRKKNLQYYEISAKSNYNFEKPFLWLARKLLGNPN 163
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Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is bound to chromatin and confined to the nucleus. Ran itself is mobile and is actively imported into the nucleus by a mechanism involving NTF-2. Together with the compartmentalization of its regulators, this is thought to produce a relatively high concentration of RanGTP in the nucleus. Length = 166 |
| >gnl|CDD|128473 smart00176, RAN, Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases | Back alignment and domain information |
|---|
Score = 340 bits (872), Expect = e-121
Identities = 135/155 (87%), Positives = 142/155 (91%)
Query: 19 VGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGL 78
VGDGGTGKTTFVKRHLTGEFEKKY T+GVEVHPL F TN G IRF WDTAGQEKFGGL
Sbjct: 1 VGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIRFNVWDTAGQEKFGGL 60
Query: 79 RDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQ 138
RDGYYI GQCAIIMFDVTAR+TYKNVP WHRDL RVCENIPIVLCGNKVDVK+R+VKAK
Sbjct: 61 RDGYYIQGQCAIIMFDVTARVTYKNVPNWHRDLVRVCENIPIVLCGNKVDVKDRKVKAKS 120
Query: 139 VTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAG 173
+TFHRKKNLQYY+ISAKSNYNFEKPFL+LARKL G
Sbjct: 121 ITFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIG 155
|
Ran is involved in the active transport of proteins through nuclear pores. Length = 200 |
| >gnl|CDD|215692 pfam00071, Ras, Ras family | Back alignment and domain information |
|---|
Score = 196 bits (500), Expect = 4e-65
Identities = 62/160 (38%), Positives = 99/160 (61%), Gaps = 3/160 (1%)
Query: 15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK 74
KLV+VGDGG GK++ + R +F ++Y PTIGV+ + + ++ WDTAGQE+
Sbjct: 1 KLVLVGDGGVGKSSLLIRFTQNKFPEEYIPTIGVDFYTKTIEVDGKTVKLQIWDTAGQER 60
Query: 75 FGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKN-R 132
F LR YY Q ++++D+T+R +++NV W ++ R EN+PIVL GNK D+++ R
Sbjct: 61 FRALRPLYYRGAQGFLLVYDITSRDSFENVKKWLEEILRHADENVPIVLVGNKCDLEDQR 120
Query: 133 QVKAKQV-TFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
V ++ ++ L + E SAK+N N E+ F LAR++
Sbjct: 121 VVSTEEGEALAKELGLPFMETSAKTNENVEEAFEELAREI 160
|
Includes sub-families Ras, Rab, Rac, Ral, Ran, Rap Ypt1 and more. Shares P-loop motif with GTP_EFTU, arf and myosin_head. See pfam00009 pfam00025, pfam00063. As regards Rab GTPases, these are important regulators of vesicle formation, motility and fusion. They share a fold in common with all Ras GTPases: this is a six-stranded beta-sheet surrounded by five alpha-helices. Length = 162 |
| >gnl|CDD|206640 cd00154, Rab, Ras-related in brain (Rab) family of small guanosine triphosphatases (GTPases) | Back alignment and domain information |
|---|
Score = 159 bits (406), Expect = 1e-50
Identities = 61/161 (37%), Positives = 94/161 (58%), Gaps = 7/161 (4%)
Query: 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
FK+V++GD G GKT+ + R + +F + Y+ TIGV+ + K++ WDTAGQE
Sbjct: 1 FKIVLIGDSGVGKTSLLLRFVDNKFSENYKSTIGVDFKSKTIEVDGKKVKLQIWDTAGQE 60
Query: 74 KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVD-VKN 131
+F + YY AI+++DVT R +++N+ W +L NIPI+L GNK D
Sbjct: 61 RFRSITSSYYRGAHGAILVYDVTNRESFENLDKWLNELKEYAPPNIPIILVGNKSDLEDE 120
Query: 132 RQV---KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLAR 169
RQV +A+Q F ++ L ++E SAK+ N ++ F LAR
Sbjct: 121 RQVSTEEAQQ--FAKENGLLFFETSAKTGENVDEAFESLAR 159
|
Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which mask C-terminal lipid binding and promote cytosolic localization. While most unicellular organisms possess 5-20 Rab members, several have been found to possess 60 or more Rabs; for many of these Rab isoforms, homologous proteins are not found in other organisms. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Since crystal structures often lack C-terminal residues, the lipid modification site is not available for annotation in many of the CDs in the hierarchy, but is included where possible. Length = 159 |
| >gnl|CDD|197555 smart00175, RAB, Rab subfamily of small GTPases | Back alignment and domain information |
|---|
Score = 137 bits (347), Expect = 9e-42
Identities = 59/166 (35%), Positives = 98/166 (59%), Gaps = 13/166 (7%)
Query: 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDF----FTNCGK-IRFYCWD 68
FK++++GD G GK++ + R G+F ++Y+ TIGV DF GK ++ WD
Sbjct: 1 FKIILIGDSGVGKSSLLSRFTDGKFSEQYKSTIGV-----DFKTKTIEVDGKRVKLQIWD 55
Query: 69 TAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKV 127
TAGQE+F + YY A++++D+T R +++N+ W ++L N+ I+L GNK
Sbjct: 56 TAGQERFRSITSSYYRGAVGALLVYDITNRESFENLENWLKELREYASPNVVIMLVGNKS 115
Query: 128 DVKN-RQVKAKQVT-FHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
D++ RQV ++ F + L ++E SAK+N N E+ F LAR++
Sbjct: 116 DLEEQRQVSREEAEAFAEEHGLPFFETSAKTNTNVEEAFEELAREI 161
|
Rab GTPases are implicated in vesicle trafficking. Length = 164 |
| >gnl|CDD|224025 COG1100, COG1100, GTPase SAR1 and related small G proteins [General function prediction only] | Back alignment and domain information |
|---|
Score = 131 bits (331), Expect = 7e-39
Identities = 59/181 (32%), Positives = 84/181 (46%), Gaps = 21/181 (11%)
Query: 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAG 71
FK+V++GDGG GKTT + R + EF + Y PTIG I+ WDTAG
Sbjct: 4 KEFKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPYRRNIKLQLWDTAG 63
Query: 72 QEKFGGLRDGYYIHGQCAIIMFDVTARL-TYKNVPTWHRDLCRVC-ENIPIVLCGNKVDV 129
QE++ LR YY +I++D T R + + W +L + +++PI+L GNK+D+
Sbjct: 64 QEEYRSLRPEYYRGANGILIVYDSTLRESSDELTEEWLEELRELAPDDVPILLVGNKIDL 123
Query: 130 KNRQ-----------------VKAKQVTFHRKKNLQYYEISAKS--NYNFEKPFLYLARK 170
+ Q V A + N E SAKS N + F L RK
Sbjct: 124 FDEQSSSEEILNQLNREVVLLVLAPKAVLPEVANPALLETSAKSLTGPNVNELFKELLRK 183
Query: 171 L 171
L
Sbjct: 184 L 184
|
Length = 219 |
| >gnl|CDD|133306 cd04106, Rab23_like, Rab GTPase family 23 (Rab23)-like | Back alignment and domain information |
|---|
Score = 122 bits (309), Expect = 3e-36
Identities = 49/160 (30%), Positives = 86/160 (53%), Gaps = 4/160 (2%)
Query: 15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGK--IRFYCWDTAGQ 72
K+++VG+G GK++ ++R + G F K Y+ TIGV+ F +R WDTAGQ
Sbjct: 2 KVIVVGNGNVGKSSMIQRFVKGIFTKDYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQ 61
Query: 73 EKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNR 132
E+F + YY Q I++F T R +++ + +W + C +IP+VL K+D+ ++
Sbjct: 62 EEFDAITKAYYRGAQACILVFSTTDRESFEAIESWKEKVEAECGDIPMVLVQTKIDLLDQ 121
Query: 133 Q-VKAKQV-TFHRKKNLQYYEISAKSNYNFEKPFLYLARK 170
+ ++ ++ L + S K ++N + F YLA K
Sbjct: 122 AVITNEEAEALAKRLQLPLFRTSVKDDFNVTELFEYLAEK 161
|
Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signaling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 162 |
| >gnl|CDD|206642 cd00876, Ras, Rat sarcoma (Ras) family of small guanosine triphosphatases (GTPases) | Back alignment and domain information |
|---|
Score = 119 bits (301), Expect = 7e-35
Identities = 57/172 (33%), Positives = 91/172 (52%), Gaps = 27/172 (15%)
Query: 15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTI-----------GVEVHPLDFFTNCGKIR 63
KLV++G GG GK+ R ++GEF ++Y+PTI G LD
Sbjct: 1 KLVVLGAGGVGKSALTIRFVSGEFVEEYDPTIEDSYRKQIVVDGETYT-LDIL------- 52
Query: 64 FYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIV 121
DTAGQE+F +RD Y +G I+++ +T+R +++ + + RV E++PIV
Sbjct: 53 ----DTAGQEEFSAMRDQYIRNGDGFILVYSITSRESFEEIKNIREQILRVKDKEDVPIV 108
Query: 122 LCGNKVDVKN-RQVKAKQVT-FHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
L GNK D++N RQV ++ + + E SAK+N N ++ F L R++
Sbjct: 109 LVGNKCDLENERQVSTEEGEALAEEWGCPFLETSAKTNINIDELFNTLVREI 160
|
The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 160 |
| >gnl|CDD|206653 cd01860, Rab5_related, Rab-related GTPase family includes Rab5 and Rab22; regulates early endosome fusion | Back alignment and domain information |
|---|
Score = 118 bits (298), Expect = 2e-34
Identities = 57/168 (33%), Positives = 87/168 (51%), Gaps = 15/168 (8%)
Query: 13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFT------NCGKIRFYC 66
FKLV++GD GK++ V R + EF + E TIG F T + ++F
Sbjct: 1 QFKLVLLGDSSVGKSSIVLRFVKNEFSENQESTIGAA-----FLTQTVNLDDTT-VKFEI 54
Query: 67 WDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCR-VCENIPIVLCGN 125
WDTAGQE++ L YY AI+++D+T+ +++ +W ++L NI I L GN
Sbjct: 55 WDTAGQERYRSLAPMYYRGAAAAIVVYDITSEESFEKAKSWVKELQEHGPPNIVIALAGN 114
Query: 126 KVD-VKNRQVKAKQV-TFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
K D RQV ++ + + L + E SAK+ N + F +ARKL
Sbjct: 115 KADLESKRQVSTEEAQEYADENGLLFMETSAKTGENVNELFTEIARKL 162
|
The Rab5-related subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 163 |
| >gnl|CDD|206656 cd01863, Rab18, Rab GTPase family 18 (Rab18) | Back alignment and domain information |
|---|
Score = 110 bits (278), Expect = 2e-31
Identities = 54/161 (33%), Positives = 87/161 (54%), Gaps = 3/161 (1%)
Query: 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
K++++GD G GK++ + R F++ TIGV+ + K++ WDTAGQE
Sbjct: 1 LKILLIGDSGVGKSSLLLRFTDDTFDEDLSSTIGVDFKVKTVTVDGKKVKLAIWDTAGQE 60
Query: 74 KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKN 131
+F L YY Q I+++DVT R T+ N+ TW +L + +L GNK+D +N
Sbjct: 61 RFRTLTSSYYRGAQGVILVYDVTRRDTFDNLDTWLNELDTYSTNPDAVKMLVGNKIDKEN 120
Query: 132 RQVKAKQ-VTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
R+V ++ F RK N+ + E SAK+ ++ F L K+
Sbjct: 121 REVTREEGQKFARKHNMLFIETSAKTRIGVQQAFEELVEKI 161
|
Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 161 |
| >gnl|CDD|206660 cd01868, Rab11_like, Rab GTPase family 11 (Rab11)-like includes Rab11a, Rab11b, and Rab25 | Back alignment and domain information |
|---|
Score = 109 bits (276), Expect = 5e-31
Identities = 60/166 (36%), Positives = 85/166 (51%), Gaps = 27/166 (16%)
Query: 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTN----CGK-IRFYCWD 68
FK+V++GD G GK+ + R EF + TIGVE F T GK I+ WD
Sbjct: 4 FKIVLIGDSGVGKSNLLSRFTRNEFNLDSKSTIGVE-----FATRTIQIDGKTIKAQIWD 58
Query: 69 TAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTW------HRDLCRVCENIPIVL 122
TAGQE++ + YY A++++D+T + T++NV W H D NI I+L
Sbjct: 59 TAGQERYRAITSAYYRGAVGALLVYDITKKSTFENVERWLKELRDHAD-----SNIVIML 113
Query: 123 CGNKVDVKN-RQV---KAKQVTFHRKKNLQYYEISAKSNYNFEKPF 164
GNK D+++ R V +AK F K L + E SA N E+ F
Sbjct: 114 VGNKSDLRHLRAVPTEEAKA--FAEKNGLSFIETSALDGTNVEEAF 157
|
Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 165 |
| >gnl|CDD|214541 smart00173, RAS, Ras subfamily of RAS small GTPases | Back alignment and domain information |
|---|
Score = 109 bits (274), Expect = 9e-31
Identities = 52/173 (30%), Positives = 86/173 (49%), Gaps = 31/173 (17%)
Query: 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTI-----------GVEVHPLDFFTNCGKI 62
+KLV++G GG GK+ + + G F Y+PTI G LD
Sbjct: 1 YKLVVLGSGGVGKSALTIQFIQGHFVDDYDPTIEDSYRKQIEIDGEVCL-LDIL------ 53
Query: 63 RFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPI 120
DTAGQE+F +RD Y G+ ++++ +T R +++ + + + RV +++PI
Sbjct: 54 -----DTAGQEEFSAMRDQYMRTGEGFLLVYSITDRQSFEEIKKFREQILRVKDRDDVPI 108
Query: 121 VLCGNKVDVKN-RQV---KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLAR 169
VL GNK D+++ R V + K++ R+ + E SAK N ++ F L R
Sbjct: 109 VLVGNKCDLESERVVSTEEGKELA--RQWGCPFLETSAKERVNVDEAFYDLVR 159
|
Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades. Length = 164 |
| >gnl|CDD|206654 cd01861, Rab6, Rab GTPase family 6 (Rab6) | Back alignment and domain information |
|---|
Score = 108 bits (273), Expect = 1e-30
Identities = 54/166 (32%), Positives = 85/166 (51%), Gaps = 13/166 (7%)
Query: 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNC-----GKIRFYCWD 68
KLV +GD GKT+ + R + F+ +Y+ TIG+ DF + +R WD
Sbjct: 1 HKLVFLGDQSVGKTSIITRFMYDTFDNQYQATIGI-----DFLSKTMYVDDKTVRLQLWD 55
Query: 69 TAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIP-IVLCGNKV 127
TAGQE+F L Y A++++D+T R ++ N W D+ N IVL GNK
Sbjct: 56 TAGQERFRSLIPSYIRDSSVAVVVYDITNRQSFDNTDKWIDDVRDERGNDVIIVLVGNKT 115
Query: 128 DV-KNRQVKAKQV-TFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
D+ RQV ++ ++ N + E SAK+ +N ++ F +A+ L
Sbjct: 116 DLSDKRQVSTEEGEKKAKENNAMFIETSAKAGHNVKQLFKKIAQAL 161
|
Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 161 |
| >gnl|CDD|197466 smart00010, small_GTPase, Small GTPase of the Ras superfamily; ill-defined subfamily | Back alignment and domain information |
|---|
Score = 108 bits (272), Expect = 2e-30
Identities = 53/175 (30%), Positives = 87/175 (49%), Gaps = 31/175 (17%)
Query: 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTI-----------GVEVHPLDFFTNCG 60
+KLV++G GG GK+ + + G F +Y+PTI G LD
Sbjct: 1 REYKLVVLGGGGVGKSALTIQFVQGHFVDEYDPTIEDSYRKQIEIDGEVCL-LDIL---- 55
Query: 61 KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENI 118
DTAGQE+F +RD Y G+ ++++ +T R +++ + + + RV +++
Sbjct: 56 -------DTAGQEEFSAMRDQYMRTGEGFLLVYSITDRQSFEEIAKFREQILRVKDRDDV 108
Query: 119 PIVLCGNKVDVKN-RQV---KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLAR 169
PIVL GNK D++N R V + K++ R+ + E SAK N ++ F L R
Sbjct: 109 PIVLVGNKCDLENERVVSTEEGKELA--RQWGCPFLETSAKERINVDEAFYDLVR 161
|
SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily. Length = 166 |
| >gnl|CDD|133267 cd01864, Rab19, Rab GTPase family 19 (Rab19) | Back alignment and domain information |
|---|
Score = 108 bits (271), Expect = 2e-30
Identities = 53/166 (31%), Positives = 89/166 (53%), Gaps = 12/166 (7%)
Query: 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
FK++++GD GKT V+R +G F ++ TIGV+ +++ WDTAGQE
Sbjct: 4 FKIILIGDSNVGKTCVVQRFKSGTFSERQGNTIGVDFTMKTLEIQGKRVKLQIWDTAGQE 63
Query: 74 KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV-CENIPIVLCGNKVDVKNR 132
+F + YY AII +D+T R ++++VP W ++ + N+ ++L GNK D++ +
Sbjct: 64 RFRTITQSYYRSANGAIIAYDITRRSSFESVPHWIEEVEKYGASNVVLLLIGNKCDLEEQ 123
Query: 133 QVKAKQVTFHRKKNLQYY-------EISAKSNYNFEKPFLYLARKL 171
++V F L + E SAK + N E+ FL +A +L
Sbjct: 124 ----REVLFEEACTLAEHYGILAVLETSAKESSNVEEAFLLMATEL 165
|
Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet characterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 165 |
| >gnl|CDD|133323 cd04123, Rab21, Rab GTPase family 21 (Rab21) | Back alignment and domain information |
|---|
Score = 107 bits (269), Expect = 4e-30
Identities = 54/167 (32%), Positives = 93/167 (55%), Gaps = 13/167 (7%)
Query: 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFT---NCG--KIRFYCWD 68
FK+V++G+G GKT+ V R++ +F +K+E T FF N G +I WD
Sbjct: 1 FKVVLLGEGRVGKTSLVLRYVENKFNEKHESTTQAS-----FFQKTVNIGGKRIDLAIWD 55
Query: 69 TAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKV 127
TAGQE++ L YY AI+++D+T +++ V W ++L ++ NI +V+ GNK+
Sbjct: 56 TAGQERYHALGPIYYRDADGAILVYDITDADSFQKVKKWIKELKQMRGNNISLVIVGNKI 115
Query: 128 D-VKNRQVKAKQV-TFHRKKNLQYYEISAKSNYNFEKPFLYLARKLA 172
D + R V + + + +++E SAK+ E+ FL LA+++
Sbjct: 116 DLERQRVVSKSEAEEYAKSVGAKHFETSAKTGKGIEELFLSLAKRMI 162
|
The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 162 |
| >gnl|CDD|206692 cd04107, Rab32_Rab38, Rab GTPase families 18 (Rab18) and 32 (Rab32) | Back alignment and domain information |
|---|
Score = 108 bits (272), Expect = 4e-30
Identities = 63/171 (36%), Positives = 93/171 (54%), Gaps = 16/171 (9%)
Query: 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVE----VHPLDFFTNCGKIRFYCWDT 69
FK++++GD G GKT+ +KR++ G F + Y+ TIGV+ V D T R WD
Sbjct: 1 FKVLVIGDLGVGKTSIIKRYVHGVFSQHYKATIGVDFALKVIEWDPNTVV---RLQLWDI 57
Query: 70 AGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDL-CRVC----ENIPIVLCG 124
AGQE+FGG+ YY AII+FDVT T++ V W DL +V E IP +L
Sbjct: 58 AGQERFGGMTRVYYKGAVGAIIVFDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPALLLA 117
Query: 125 NKVDVKNRQVKAKQVTFHR--KKN--LQYYEISAKSNYNFEKPFLYLARKL 171
NK D+K ++ + K+N + ++E SAK N N E+ +L + +
Sbjct: 118 NKCDLKKERLAKDPEQMDQFCKENGFIGWFETSAKENINIEEAMRFLVKNI 168
|
Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 201 |
| >gnl|CDD|206655 cd01862, Rab7, Rab GTPase family 7 (Rab7) | Back alignment and domain information |
|---|
Score = 106 bits (267), Expect = 1e-29
Identities = 54/170 (31%), Positives = 90/170 (52%), Gaps = 18/170 (10%)
Query: 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFT-----NCGKIRFYCWD 68
K++I+GD G GKT+ + +++ +F +Y+ TIG DF T + + WD
Sbjct: 1 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGA-----DFLTKEVTVDDRLVTLQIWD 55
Query: 69 TAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-----ENIPIVLC 123
TAGQE+F L +Y C ++++DVT +++++ +W + EN P V+
Sbjct: 56 TAGQERFQSLGVAFYRGADCCVLVYDVTNPKSFESLDSWRDEFLIQASPRDPENFPFVVL 115
Query: 124 GNKVDV-KNRQVKAKQVT--FHRKKNLQYYEISAKSNYNFEKPFLYLARK 170
GNK+D+ + RQV K+ K N+ Y+E SAK N ++ F +AR
Sbjct: 116 GNKIDLEEKRQVSTKKAQQWCKSKGNIPYFETSAKEAINVDQAFETIARL 165
|
Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 172 |
| >gnl|CDD|133345 cd04145, M_R_Ras_like, R-Ras2/TC21, M-Ras/R-Ras3 | Back alignment and domain information |
|---|
Score = 102 bits (255), Expect = 5e-28
Identities = 54/167 (32%), Positives = 89/167 (53%), Gaps = 15/167 (8%)
Query: 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKI-----RFYC 66
P++KLV+VG GG GK+ + + F Y+PTI D +T +I R
Sbjct: 1 PTYKLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIE------DSYTKQCEIDGQWARLDI 54
Query: 67 WDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCG 124
DTAGQE+F +R+ Y G+ +++F VT R +++ V +H + RV + P++L G
Sbjct: 55 LDTAGQEEFSAMREQYMRTGEGFLLVFSVTDRGSFEEVDKFHTQILRVKDRDEFPMILVG 114
Query: 125 NKVDVKNRQVKAKQ--VTFHRKKNLQYYEISAKSNYNFEKPFLYLAR 169
NK D+++++ +++ R+ + Y E SAK N +K F L R
Sbjct: 115 NKADLEHQRQVSREEGQELARQLKIPYIETSAKDRVNVDKAFHDLVR 161
|
The M-Ras/R-Ras-like subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 164 |
| >gnl|CDD|206659 cd01867, Rab8_Rab10_Rab13_like, Rab GTPase families 8, 10, 13 (Rab8, Rab10, Rab13) | Back alignment and domain information |
|---|
Score = 101 bits (253), Expect = 1e-27
Identities = 50/163 (30%), Positives = 86/163 (52%), Gaps = 11/163 (6%)
Query: 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
FKL+++GD G GK+ + R F + TIG++ + KI+ WDTAGQE
Sbjct: 4 FKLLLIGDSGVGKSCLLLRFSEDSFNPSFISTIGIDFKIRTIELDGKKIKLQIWDTAGQE 63
Query: 74 KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCR-VCENIPIVLCGNKVDVKNR 132
+F + YY I+++D+T +++N+ W R++ E++ +L GNK D++ +
Sbjct: 64 RFRTITTSYYRGAMGIILVYDITDEKSFENIKNWMRNIDEHASEDVERMLVGNKCDMEEK 123
Query: 133 QVKAKQVTFHRKKNL------QYYEISAKSNYNFEKPFLYLAR 169
+ V+ + L ++ E SAK+N N E+ FL LA+
Sbjct: 124 ----RVVSKEEGEALAREYGIKFLETSAKANINVEEAFLTLAK 162
|
Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 167 |
| >gnl|CDD|206658 cd01866, Rab2, Rab GTPase family 2 (Rab2) | Back alignment and domain information |
|---|
Score = 100 bits (252), Expect = 2e-27
Identities = 52/162 (32%), Positives = 89/162 (54%), Gaps = 5/162 (3%)
Query: 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
FK +I+GD G GK+ + + F+ ++ TIGVE + +I+ WDTAGQE
Sbjct: 5 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQE 64
Query: 74 KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCR--VCENIPIVLCGNKVDVKN 131
F + YY A++++D+T R T+ ++ +W D R N+ I+L GNK D+++
Sbjct: 65 SFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLED-ARQHSNSNMTIMLIGNKCDLES 123
Query: 132 RQVKAKQ--VTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
R+ + + F R+ L + E SAK+ N E+ F+ A+++
Sbjct: 124 RREVSYEEGEAFAREHGLIFMETSAKTASNVEEAFINTAKEI 165
|
Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 168 |
| >gnl|CDD|206696 cd04113, Rab4, Rab GTPase family 4 (Rab4) | Back alignment and domain information |
|---|
Score = 99.0 bits (247), Expect = 8e-27
Identities = 51/162 (31%), Positives = 86/162 (53%), Gaps = 5/162 (3%)
Query: 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
FK +I+G GTGK+ + + + +F++ TIGVE ++ WDTAGQE
Sbjct: 1 FKFLIIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKSVKLQIWDTAGQE 60
Query: 74 KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCR--VCENIPIVLCGNKVDVK- 130
+F + YY A++++D+T+R ++ + W D R +I I+L GNK D++
Sbjct: 61 RFRSVTRSYYRGAAGALLVYDITSRESFNALTNWLTD-ARTLASPDIVIILVGNKKDLED 119
Query: 131 NRQVKAKQV-TFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
+R+V + F ++ L + E SA + N E+ FL AR +
Sbjct: 120 DREVTFLEASRFAQENGLLFLETSALTGENVEEAFLKCARSI 161
|
Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 161 |
| >gnl|CDD|206661 cd01869, Rab1_Ypt1, Rab GTPase family 1 includes the yeast homolog Ypt1 | Back alignment and domain information |
|---|
Score = 98.6 bits (246), Expect = 1e-26
Identities = 58/173 (33%), Positives = 92/173 (53%), Gaps = 27/173 (15%)
Query: 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIR---------- 63
FKL+++GD G GK+ + R + + Y TIGV DF KIR
Sbjct: 3 FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGV-----DF-----KIRTIELDGKTVK 52
Query: 64 FYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCR-VCENIPIVL 122
WDTAGQE+F + YY II++DVT + ++ NV W +++ R EN+ +L
Sbjct: 53 LQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLQEIDRYASENVNKLL 112
Query: 123 CGNKVDVKNRQV----KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
GNK D+ +++V +AK+ F + + + E SAK+ N E+ F+ +AR++
Sbjct: 113 VGNKCDLTDKKVVDYTEAKE--FADELGIPFLETSAKNATNVEEAFMTMAREI 163
|
Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 166 |
| >gnl|CDD|206700 cd04127, Rab27A, Rab GTPase family 27a (Rab27a) | Back alignment and domain information |
|---|
Score = 97.2 bits (242), Expect = 6e-26
Identities = 54/162 (33%), Positives = 81/162 (50%), Gaps = 14/162 (8%)
Query: 15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVH----------PLDFFTNCGKIRF 64
KL+ +GD G GKTTF+ R+ +F K+ T+G++ P ++
Sbjct: 6 KLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNSQGPDGTSGKAFRVHL 65
Query: 65 YCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCR--VCENIPIVL 122
WDTAGQE+F L ++ ++MFD+T+ ++ NV W L CEN IVL
Sbjct: 66 QLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSEQSFLNVRNWMSQLQAHAYCENPDIVL 125
Query: 123 CGNKVDVKN-RQVKAKQV-TFHRKKNLQYYEISAKSNYNFEK 162
GNK D+ + R+V +Q K + Y+E SA + N EK
Sbjct: 126 IGNKADLPDQREVSERQARELADKYGIPYFETSAATGQNVEK 167
|
The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated insulin secretion, making it a potential target for diabetes therapy. When bound to JFC1 in prostate cells, Rab27a is believed to regulate the exocytosis of prostate- specific markers. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 180 |
| >gnl|CDD|133322 cd04122, Rab14, Rab GTPase family 14 (Rab14) | Back alignment and domain information |
|---|
Score = 96.8 bits (241), Expect = 6e-26
Identities = 56/161 (34%), Positives = 83/161 (51%), Gaps = 3/161 (1%)
Query: 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
FK +I+GD G GK+ + + +F TIGVE N KI+ WDTAGQE
Sbjct: 3 FKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVNGQKIKLQIWDTAGQE 62
Query: 74 KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCE-NIPIVLCGNKVDVK-N 131
+F + YY A++++D+T R TY ++ +W D + N I L GNK D++
Sbjct: 63 RFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADLEAQ 122
Query: 132 RQVKAKQ-VTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
R V ++ F + L + E SAK+ N E FL A+K+
Sbjct: 123 RDVTYEEAKQFADENGLLFLECSAKTGENVEDAFLETAKKI 163
|
Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 166 |
| >gnl|CDD|133324 cd04124, RabL2, Rab GTPase-like family 2 (Rab-like2) | Back alignment and domain information |
|---|
Score = 96.1 bits (239), Expect = 1e-25
Identities = 49/150 (32%), Positives = 76/150 (50%), Gaps = 1/150 (0%)
Query: 15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK 74
K++++GD GK+ V+R L +E + T + ++ + I WDTAGQE+
Sbjct: 2 KIILLGDSAVGKSKLVERFLMDGYEPQQLSTYALTLYKHNAKFEGKTILVDFWDTAGQER 61
Query: 75 FGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQV 134
F + YY I++FDVT ++TYKN+ W+ +L IP ++ NK+D+ V
Sbjct: 62 FQTMHASYYHKAHACILVFDVTRKITYKNLSKWYEELREYRPEIPCIVVANKIDLDPS-V 120
Query: 135 KAKQVTFHRKKNLQYYEISAKSNYNFEKPF 164
K+ F K NL Y +SA N K F
Sbjct: 121 TQKKFNFAEKHNLPLYYVSAADGTNVVKLF 150
|
RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share > 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Length = 161 |
| >gnl|CDD|206697 cd04116, Rab9, Rab GTPase family 9 (Rab9) | Back alignment and domain information |
|---|
Score = 96.1 bits (239), Expect = 1e-25
Identities = 51/164 (31%), Positives = 84/164 (51%), Gaps = 7/164 (4%)
Query: 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
K++++GDGG GK++ + R++T +F+ + TIGVE D + + WDTAGQE
Sbjct: 6 LKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTLQIWDTAGQE 65
Query: 74 KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDL-----CRVCENIPIVLCGNKVD 128
+F LR +Y C ++ F V +++N+ W ++ + E+ P V+ GNK+D
Sbjct: 66 RFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKID 125
Query: 129 VKNRQV--KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARK 170
+ RQV + Q + Y+E SAK N F R+
Sbjct: 126 IPERQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVRR 169
|
Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 170 |
| >gnl|CDD|206648 cd00882, Ras_like_GTPase, Rat sarcoma (Ras)-like superfamily of small guanosine triphosphatases (GTPases) | Back alignment and domain information |
|---|
Score = 96.0 bits (239), Expect = 1e-25
Identities = 41/164 (25%), Positives = 69/164 (42%), Gaps = 14/164 (8%)
Query: 17 VIVGDGGTGKTTFVKRHLTGEF---EKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
V+VG GG GK++ + L GE T +V+ + K+ DT G +
Sbjct: 1 VVVGRGGVGKSSLLNALLGGEVGEVSDVPGTTRDPDVYVKELDKGKVKLVL--VDTPGLD 58
Query: 74 KFGGLRDGYYIHG-----QCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVD 128
+FGGL +++ D T R + ++ E IPI+L GNK+D
Sbjct: 59 EFGGLGREELARLLLRGADLILLVVDSTDRESEEDA-KLLILRRLRKEGIPIILVGNKID 117
Query: 129 -VKNRQVKAKQVTFHRKK--NLQYYEISAKSNYNFEKPFLYLAR 169
++ R+V+ K + +E+SAK+ ++ F L
Sbjct: 118 LLEEREVEELLRLEELAKILGVPVFEVSAKTGEGVDELFEKLIE 161
|
Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulates initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Members of the Ras superfamily are identified by the GTP binding site, which is made up of five characteristic sequence motifs, and the switch I and switch II regions. Length = 161 |
| >gnl|CDD|133314 cd04114, Rab30, Rab GTPase family 30 (Rab30) | Back alignment and domain information |
|---|
Score = 96.1 bits (239), Expect = 1e-25
Identities = 56/161 (34%), Positives = 87/161 (54%), Gaps = 3/161 (1%)
Query: 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
FK+V++G+ G GKT V+R G F TIGV+ KI+ WDTAGQE
Sbjct: 8 FKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEIKGEKIKLQIWDTAGQE 67
Query: 74 KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCEN-IPIVLCGNKVDVKNR 132
+F + YY I+ +D+T +++ +P W R++ + N + +L GNK+D+ R
Sbjct: 68 RFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYANNKVITILVGNKIDLAER 127
Query: 133 QVKAKQVT--FHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
+ ++Q F +++ Y E SAK + N EK FL LA +L
Sbjct: 128 REVSQQRAEEFSDAQDMYYLETSAKESDNVEKLFLDLACRL 168
|
Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 169 |
| >gnl|CDD|133338 cd04138, H_N_K_Ras_like, Ras GTPase family containing H-Ras,N-Ras and K-Ras4A/4B | Back alignment and domain information |
|---|
Score = 94.0 bits (234), Expect = 7e-25
Identities = 51/171 (29%), Positives = 85/171 (49%), Gaps = 24/171 (14%)
Query: 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTI----------GVEVHPLDFFTNCGKIR 63
+KLV+VG GG GK+ + + F +Y+PTI E LD
Sbjct: 2 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDIL------- 54
Query: 64 FYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIV 121
DTAGQE++ +RD Y G+ + +F + +R +++++ T+ + RV +++P+V
Sbjct: 55 ----DTAGQEEYSAMRDQYMRTGEGFLCVFAINSRKSFEDIHTYREQIKRVKDSDDVPMV 110
Query: 122 LCGNKVDVKNRQVKAKQV-TFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
L GNK D+ R V +Q + + Y E SAK+ E+ F L R++
Sbjct: 111 LVGNKCDLAARTVSTRQGQDLAKSYGIPYIETSAKTRQGVEEAFYTLVREI 161
|
H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1. Others are proposed to play negative regulatory roles in oncogenesis, including RASSF and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 162 |
| >gnl|CDD|178657 PLN03110, PLN03110, Rab GTPase; Provisional | Back alignment and domain information |
|---|
Score = 95.4 bits (237), Expect = 9e-25
Identities = 57/167 (34%), Positives = 84/167 (50%), Gaps = 4/167 (2%)
Query: 1 MALPSQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG 60
MA DY FK+V++GD G GK+ + R EF + + TIGVE
Sbjct: 1 MAHRVDHEYDY-LFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGK 59
Query: 61 KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCE-NIP 119
++ WDTAGQE++ + YY A++++D+T R T+ NV W R+L + NI
Sbjct: 60 TVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVQRWLRELRDHADSNIV 119
Query: 120 IVLCGNKVDVKN-RQVKAKQV-TFHRKKNLQYYEISAKSNYNFEKPF 164
I++ GNK D+ + R V + K+ L + E SA N EK F
Sbjct: 120 IMMAGNKSDLNHLRSVAEEDGQALAEKEGLSFLETSALEATNVEKAF 166
|
Length = 216 |
| >gnl|CDD|133310 cd04110, Rab35, Rab GTPase family 35 (Rab35) | Back alignment and domain information |
|---|
Score = 94.2 bits (234), Expect = 2e-24
Identities = 52/159 (32%), Positives = 81/159 (50%), Gaps = 2/159 (1%)
Query: 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
FKL+I+GD G GK++ + R F Y TIGV+ N +++ WDTAGQE
Sbjct: 7 FKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGERVKLQIWDTAGQE 66
Query: 74 KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQ 133
+F + YY I+++DVT ++ NV W +++ + C+++ VL GNK D R+
Sbjct: 67 RFRTITSTYYRGTHGVIVVYDVTNGESFVNVKRWLQEIEQNCDDVCKVLVGNKNDDPERK 126
Query: 134 V--KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARK 170
V F + + +E SAK N N E+ F +
Sbjct: 127 VVETEDAYKFAGQMGISLFETSAKENINVEEMFNCITEL 165
|
Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 199 |
| >gnl|CDD|133375 cd04175, Rap1, Rap1 family GTPase consists of Rap1a and Rap1b isoforms | Back alignment and domain information |
|---|
Score = 92.6 bits (230), Expect = 2e-24
Identities = 52/168 (30%), Positives = 90/168 (53%), Gaps = 17/168 (10%)
Query: 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTI------GVEVHPLDFFTNCGKIRFYCW 67
+KLV++G GG GK+ + + G F +KY+PTI VEV + +
Sbjct: 2 YKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEV-------DGQQCMLEIL 54
Query: 68 DTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGN 125
DTAG E+F +RD Y +GQ ++++ +TA+ T+ ++ + RV E++P++L GN
Sbjct: 55 DTAGTEQFTAMRDLYMKNGQGFVLVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGN 114
Query: 126 KVDVKNRQVKAKQV--TFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
K D+++ +V K+ R+ + E SAK+ N + F L R++
Sbjct: 115 KCDLEDERVVGKEQGQNLARQWGCAFLETSAKAKINVNEIFYDLVRQI 162
|
The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines; interestingly, in the SCCs, the active GTP-bound form localized to the nucleus, while the inactive GDP-bound form localized to the cytoplasm. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres. Rap1a, which is stimulated by T-cell receptor (TCR) activation, is a positive regulator of T cells by directing integrin activation and augmenting lymphocyte responses. In murine hippocampal neurons, Rap1b determines which neurite will become the axon and directs the recruitment of Cdc42, which is required for formation of dendrites and axons. In murine platelets, Rap1b is required for normal homeostasis in vivo and is involved in integrin activation. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 164 |
| >gnl|CDD|206641 cd00157, Rho, Ras homology family (Rho) of small guanosine triphosphatases (GTPases) | Back alignment and domain information |
|---|
Score = 92.6 bits (231), Expect = 3e-24
Identities = 48/170 (28%), Positives = 83/170 (48%), Gaps = 16/170 (9%)
Query: 15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK 74
K+V+VGDG GKT + + T +F +Y PT+ + + + + ++ WDTAGQE+
Sbjct: 2 KIVVVGDGAVGKTCLLISYTTNKFPTEYVPTV-FDNYSANVTVDGKQVNLGLWDTAGQEE 60
Query: 75 FGGLRDGYYIHGQCAIIMFDVTARLTYKNVPT-WHRDLCRVCENIPIVLCGNKVD----- 128
+ LR Y ++ F V + +++NV T W+ ++ C N+PI+L G K+D
Sbjct: 61 YDRLRPLSYPQTDVFLLCFSVDSPSSFENVKTKWYPEIKHYCPNVPIILVGTKIDLRDDG 120
Query: 129 --VKNRQVKAKQVTF-------HRKKNLQYYEISAKSNYNFEKPFLYLAR 169
+K + K K +T ++Y E SA + ++ F R
Sbjct: 121 NTLKKLEKKQKPITPEEGEKLAKEIGAVKYMECSALTQEGLKEVFDEAIR 170
|
Members of the Rho (Ras homology) family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Since crystal structures often lack C-terminal residues, this feature is not available for annotation in many of the CDs in the hierarchy. Length = 171 |
| >gnl|CDD|133311 cd04111, Rab39, Rab GTPase family 39 (Rab39) | Back alignment and domain information |
|---|
Score = 92.9 bits (231), Expect = 6e-24
Identities = 49/169 (28%), Positives = 90/169 (53%), Gaps = 15/169 (8%)
Query: 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNC------GKIRFYCW 67
F+L+++GD GK++ +KR G F + +PT+GV DFF+ +I+ W
Sbjct: 3 FRLIVIGDSTVGKSSLLKRFTEGRFAEVSDPTVGV-----DFFSRLIEIEPGVRIKLQLW 57
Query: 68 DTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCR--VCENIPIVLCGN 125
DTAGQE+F + YY + +++FD+T R ++++V W + +L G+
Sbjct: 58 DTAGQERFRSITRSYYRNSVGVLLVFDITNRESFEHVHDWLEEARSHIQPHRPVFILVGH 117
Query: 126 KVDVKN-RQV-KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLA 172
K D+++ RQV + + + ++Y E SA++ N E+ F L +++
Sbjct: 118 KCDLESQRQVTREEAEKLAKDLGMKYIETSARTGDNVEEAFELLTQEIY 166
|
Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 211 |
| >gnl|CDD|206704 cd04132, Rho4_like, Ras homology family 4 (Rho4) of small guanosine triphosphatases (GTPases)-like | Back alignment and domain information |
|---|
Score = 92.0 bits (229), Expect = 9e-24
Identities = 54/170 (31%), Positives = 77/170 (45%), Gaps = 18/170 (10%)
Query: 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRF-YCWDTA 70
K+V+VGDGG GKT + + G F ++Y PT+ E + GKI WDTA
Sbjct: 2 LKVKIVVVGDGGCGKTCLLMVYAQGSFPEEYVPTV-FENYVTTLQVPNGKIIELALWDTA 60
Query: 71 GQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVP-TWHRDLCRVCENIPIVLCGNKVDV 129
GQE + LR Y +I + V + NV W+ ++ C PIVL G K D+
Sbjct: 61 GQEDYDRLRPLSYPDVDVILICYSVDNPTSLDNVEDKWYPEVNHFCPGTPIVLVGLKTDL 120
Query: 130 ---KNRQVKAKQ-----VTFHRKKNL-------QYYEISAKSNYNFEKPF 164
KN K + VT + +++ Y E SAK N ++ F
Sbjct: 121 RKDKNSVSKLRAQGLEPVTPEQGESVAKSIGAVAYIECSAKLMENVDEVF 170
|
Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Length = 197 |
| >gnl|CDD|133315 cd04115, Rab33B_Rab33A, Rab GTPase family 33 includes Rab33A and Rab33B | Back alignment and domain information |
|---|
Score = 91.0 bits (226), Expect = 1e-23
Identities = 52/167 (31%), Positives = 84/167 (50%), Gaps = 10/167 (5%)
Query: 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
FK++++GD GKT R G F ++ E TIGV+ + +I+ WDTAGQE
Sbjct: 3 FKIIVIGDSNVGKTCLTYRFCAGRFPERTEATIGVDFRERTVEIDGERIKVQLWDTAGQE 62
Query: 74 KF-GGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCR---VCENIPIVLCGNKVDV 129
+F + YY + + ++DVT ++ ++P+W + C + +P +L GNK D+
Sbjct: 63 RFRKSMVQHYYRNVHAVVFVYDVTNMASFHSLPSWIEE-CEQHSLPNEVPRILVGNKCDL 121
Query: 130 K-NRQVKAKQVT-FHRKKNLQYYEISAK---SNYNFEKPFLYLARKL 171
+ QV F ++ +E SAK N + E F+ LA KL
Sbjct: 122 REQIQVPTDLAQRFADAHSMPLFETSAKDPSENDHVEAIFMTLAHKL 168
|
Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 170 |
| >gnl|CDD|215587 PLN03118, PLN03118, Rab family protein; Provisional | Back alignment and domain information |
|---|
Score = 92.0 bits (228), Expect = 2e-23
Identities = 56/177 (31%), Positives = 93/177 (52%), Gaps = 7/177 (3%)
Query: 1 MALPSQQTVDYP-SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNC 59
M S Q+ Y SFK++++GD G GK++ + ++ E PTIGV+
Sbjct: 1 MGSSSGQSSGYDLSFKILLIGDSGVGKSSLLVSFISSSVED-LAPTIGVDFKIKQLTVGG 59
Query: 60 GKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVP-TWHRDLCRVCENI 118
+++ WDTAGQE+F L YY + Q I+++DVT R T+ N+ W +++ N
Sbjct: 60 KRLKLTIWDTAGQERFRTLTSSYYRNAQGIILVYDVTRRETFTNLSDVWGKEVELYSTNQ 119
Query: 119 PIV--LCGNKVDVKNRQVKAKQ--VTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
V L GNKVD ++ + +++ + ++ + E SAK+ N E+ F LA K+
Sbjct: 120 DCVKMLVGNKVDRESERDVSREEGMALAKEHGCLFLECSAKTRENVEQCFEELALKI 176
|
Length = 211 |
| >gnl|CDD|133376 cd04176, Rap2, Rap2 family GTPase consists of Rap2a, Rap2b, and Rap2c | Back alignment and domain information |
|---|
Score = 90.7 bits (225), Expect = 2e-23
Identities = 51/172 (29%), Positives = 88/172 (51%), Gaps = 25/172 (14%)
Query: 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTI------GVEV----HPLDFFTNCGKIR 63
+K+V++G GG GK+ + ++G F +KY+PTI +EV L+
Sbjct: 2 YKVVVLGSGGVGKSALTVQFVSGTFIEKYDPTIEDFYRKEIEVDSSPSVLEIL------- 54
Query: 64 FYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIV 121
DTAG E+F +RD Y +GQ I+++ + + T++++ + RV E +PI+
Sbjct: 55 ----DTAGTEQFASMRDLYIKNGQGFIVVYSLVNQQTFQDIKPMRDQIVRVKGYEKVPII 110
Query: 122 LCGNKVDVK-NRQVK-AKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
L GNKVD++ R+V A+ + + E SAKS + F + R++
Sbjct: 111 LVGNKVDLESEREVSSAEGRALAEEWGCPFMETSAKSKTMVNELFAEIVRQM 162
|
The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, including the RalGEFs RalGDS, RGL, and Rlf, which also interact with Rap1 and Ras. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 163 |
| >gnl|CDD|206698 cd04117, Rab15, Rab GTPase family 15 (Rab15) | Back alignment and domain information |
|---|
Score = 88.1 bits (218), Expect = 1e-22
Identities = 49/158 (31%), Positives = 82/158 (51%), Gaps = 3/158 (1%)
Query: 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
F+L+++GD G GKT + R EF + TIGV+ + K+R WDTAGQE
Sbjct: 1 FRLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQE 60
Query: 74 KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDV-KN 131
++ + YY Q +++D+++ +Y+++ W D+ E + +L GNK D +
Sbjct: 61 RYQTITKQYYRRAQGIFLVYDISSERSYQHIMKWVSDVDEYAPEGVQKILIGNKADEEQK 120
Query: 132 RQVKAKQVTFHRKKNLQ-YYEISAKSNYNFEKPFLYLA 168
RQV +Q K+ ++E SA +N N ++ F L
Sbjct: 121 RQVGDEQGNKLAKEYGMDFFETSACTNKNIKESFTRLT 158
|
Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 164 |
| >gnl|CDD|206710 cd04139, RalA_RalB, Ral (Ras-like) family containing highly homologous RalA and RalB | Back alignment and domain information |
|---|
Score = 86.7 bits (215), Expect = 4e-22
Identities = 49/165 (29%), Positives = 84/165 (50%), Gaps = 11/165 (6%)
Query: 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIG---VEVHPLDFFTNCGKIRFYCWDTA 70
K+++VG GG GK+ + + EF + YEPT + LD +++ DTA
Sbjct: 1 HKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLD----GEEVQLNILDTA 56
Query: 71 GQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVD 128
GQE + +RD Y+ G+ +++F +T ++ + + + RV +N+P++L GNK D
Sbjct: 57 GQEDYAAIRDNYFRSGEGFLLVFSITDMESFTALAEFREQILRVKEDDNVPLLLVGNKCD 116
Query: 129 -VKNRQV-KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
RQV + + + Y E SAK+ N +K F L R++
Sbjct: 117 LEDKRQVSVEEAANLAEQWGVNYVETSAKTRANVDKVFFDLVREI 161
|
The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (>80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exocyst and for localizing the exocyst to the leading edge of migrating cells. In human cancer cells, RalA is required to support anchorage-independent proliferation and RalB is required to suppress apoptosis. RalA has been shown to localize to the plasma membrane while RalB is localized to the intracellular vesicles. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 163 |
| >gnl|CDD|178655 PLN03108, PLN03108, Rab family protein; Provisional | Back alignment and domain information |
|---|
Score = 87.7 bits (217), Expect = 6e-22
Identities = 51/161 (31%), Positives = 86/161 (53%), Gaps = 3/161 (1%)
Query: 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
FK +I+GD G GK+ + + F+ ++ TIGVE + I+ WDTAGQE
Sbjct: 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQE 66
Query: 74 KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCR-VCENIPIVLCGNKVDVKNR 132
F + YY A++++D+T R T+ ++ +W D + N+ I+L GNK D+ +R
Sbjct: 67 SFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHR 126
Query: 133 QVKAKQ--VTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
+ + + F ++ L + E SAK+ N E+ F+ A K+
Sbjct: 127 RAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAAKI 167
|
Length = 210 |
| >gnl|CDD|206706 cd04134, Rho3, Ras homology family 3 (Rho3) of small guanosine triphosphatases (GTPases) | Back alignment and domain information |
|---|
Score = 86.8 bits (215), Expect = 6e-22
Identities = 49/167 (29%), Positives = 76/167 (45%), Gaps = 13/167 (7%)
Query: 15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK 74
K+V++GDG GKT+ + G F + YEPT+ E + D F + + WDTAGQE+
Sbjct: 2 KVVVLGDGACGKTSLLNVFTRGYFPQVYEPTV-FENYIHDIFVDGLAVELSLWDTAGQEE 60
Query: 75 FGGLRDGYYIHGQCAIIMFDVTARLTYKNVPT-WHRDLCRVCENIPIVLCGNKVDVK--- 130
F LR Y ++ F V + +NV + W ++ C + +VL K D++
Sbjct: 61 FDRLRSLSYADTHVIMLCFSVDNPDSLENVESKWLAEIRHHCPGVKLVLVALKCDLREPR 120
Query: 131 NRQVKAKQVTFH--------RKKNLQYYEISAKSNYNFEKPFLYLAR 169
N + + + R +Y E SAK N + F AR
Sbjct: 121 NERDRGTHTISYEEGLAVAKRINACRYLECSAKLNRGVNEAFTEAAR 167
|
Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Length = 185 |
| >gnl|CDD|206695 cd04112, Rab26, Rab GTPase family 26 (Rab26) | Back alignment and domain information |
|---|
Score = 86.5 bits (214), Expect = 1e-21
Identities = 48/162 (29%), Positives = 84/162 (51%), Gaps = 4/162 (2%)
Query: 14 FKLVIVGDGGTGKTTFVKRHLTGEF-EKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQ 72
FK+++VGD G GKT + R G F + T+G++ + K++ WDTAGQ
Sbjct: 1 FKVMLVGDSGVGKTCLLVRFKDGAFLAGSFIATVGIQFTNKVVTVDGVKVKLQIWDTAGQ 60
Query: 73 EKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVK- 130
E+F + YY ++++DVT + ++ N+ W ++ ++ I+L GNK D+
Sbjct: 61 ERFRSVTHAYYRDAHALLLLYDVTNKSSFDNIRAWLTEILEYAQSDVVIMLLGNKADMSG 120
Query: 131 NRQVKAKQ-VTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
R VK + ++ + + E SAK+ N E F +A++L
Sbjct: 121 ERVVKREDGERLAKEYGVPFMETSAKTGLNVELAFTAVAKEL 162
|
Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 191 |
| >gnl|CDD|232886 TIGR00231, small_GTP, small GTP-binding protein domain | Back alignment and domain information |
|---|
Score = 85.5 bits (212), Expect = 1e-21
Identities = 39/156 (25%), Positives = 73/156 (46%), Gaps = 5/156 (3%)
Query: 14 FKLVIVGDGGTGKTTFVKRHLTGE-FEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQ 72
K+VIVGD GK+T + R L + +Y+P + +F DTAGQ
Sbjct: 2 IKIVIVGDPNVGKSTLLNRLLGNKISITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQ 61
Query: 73 EKFGGLRDGYYIHGQCAIIMFDVTARL--TYKNVPTWHRDLCRVCE-NIPIVLCGNKVDV 129
E + +R YY + ++ +FD+ + + + +++ E +PI+L GNK+D+
Sbjct: 62 EDYDAIRRLYYRAVESSLRVFDIVILVLDVEEILEKQTKEIIHHAESGVPIILVGNKIDL 121
Query: 130 KNRQVKAKQVT-FHRKKNLQYYEISAKSNYNFEKPF 164
++ ++K F + +SA++ N + F
Sbjct: 122 RDAKLKTHVAFLFAKLNGEPIIPLSAETGKNIDSAF 157
|
Proteins with a small GTP-binding domain recognized by this model include Ras, RhoA, Rab11, translation elongation factor G, translation initiation factor IF-2, tetratcycline resistance protein TetM, CDC42, Era, ADP-ribosylation factors, tdhF, and many others. In some proteins the domain occurs more than once.This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model [Unknown function, General]. Length = 162 |
| >gnl|CDD|206708 cd04136, Rap_like, Rap-like family consists of Rap1, Rap2 and RSR1 | Back alignment and domain information |
|---|
Score = 85.7 bits (212), Expect = 1e-21
Identities = 52/168 (30%), Positives = 91/168 (54%), Gaps = 16/168 (9%)
Query: 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFF-----TNCGKIRFYCWD 68
+KLV++G GG GK+ + + G F KY+PTI D + +C + D
Sbjct: 2 YKLVVLGSGGVGKSALTVQFVQGIFVDKYDPTIE------DSYRKQIEVDCQQCMLEILD 55
Query: 69 TAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNK 126
TAG E+F +RD Y +GQ +++ +TA+ ++ ++ + RV E++P++L GNK
Sbjct: 56 TAGTEQFTAMRDLYIKNGQGFALVYSITAQQSFNDLQDLREQILRVKDTEDVPMILVGNK 115
Query: 127 VDVKNRQVKAKQ--VTFHRK-KNLQYYEISAKSNYNFEKPFLYLARKL 171
D+++ +V +K+ R+ N + E SAKS N ++ F L R++
Sbjct: 116 CDLEDERVVSKEEGQNLARQWGNCPFLETSAKSKINVDEIFYDLVRQI 163
|
The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres. Rap2 is involved in multiple functions, including activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton and activation of the Wnt/beta-catenin signaling pathway in embryonic Xenopus. A number of effector proteins for Rap2 have been identified, including isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK), and the RalGEFs RalGDS, RGL, and Rlf, which also interact with Rap1 and Ras. RSR1 is the fungal homolog of Rap1 and Rap2. In budding yeasts, it is involved in selecting a site for bud growth, which directs the establishment of cell polarization. The Rho family GTPase Cdc42 and its GEF, Cdc24, then establish an axis of polarized growth. It is believed that Cdc42 interacts directly with RSR1 in vivo. In filamentous fungi such as Ashbya gossypii, RSR1 is a key regulator of polar growth in the hypha. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 164 |
| >gnl|CDD|197554 smart00174, RHO, Rho (Ras homology) subfamily of Ras-like small GTPases | Back alignment and domain information |
|---|
Score = 84.6 bits (210), Expect = 4e-21
Identities = 48/160 (30%), Positives = 77/160 (48%), Gaps = 17/160 (10%)
Query: 16 LVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKF 75
LV+VGDG GKT + + T F + Y PT+ E + D + + WDTAGQE +
Sbjct: 1 LVVVGDGAVGKTCLLIVYTTNAFPEDYVPTV-FENYSADVEVDGKPVELGLWDTAGQEDY 59
Query: 76 GGLRDGYYIHGQCAIIMFDVTARLTYKNVPT-WHRDLCRVCENIPIVLCGNKVDV----- 129
LR Y +I F V + +++NV W+ ++ C N+PI+L G K+D+
Sbjct: 60 DRLRPLSYPDTDVFLICFSVDSPASFENVKEKWYPEVKHFCPNVPIILVGTKLDLRNDKS 119
Query: 130 ---KNRQVKAKQVTFHRKKNL-------QYYEISAKSNYN 159
+ + K + VT+ + + L +Y E SA +
Sbjct: 120 TLEELSKKKQEPVTYEQGQALAKRIGAVKYLECSALTQEG 159
|
Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms. Length = 174 |
| >gnl|CDD|206657 cd01865, Rab3, Rab GTPase family 3 contains Rab3A, Rab3B, Rab3C and Rab3D | Back alignment and domain information |
|---|
Score = 84.6 bits (209), Expect = 4e-21
Identities = 47/158 (29%), Positives = 83/158 (52%), Gaps = 11/158 (6%)
Query: 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
FKL+I+G+ GKT+F+ R+ F + T+G++ + N +I+ WDTAGQE
Sbjct: 2 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVYRNDKRIKLQIWDTAGQE 61
Query: 74 KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNR 132
++ + YY I+M+D+T ++ V W + +N ++L GNK D+++
Sbjct: 62 RYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVILVGNKCDMEDE 121
Query: 133 QVKAKQVTFHRKKNL------QYYEISAKSNYNFEKPF 164
+V V+ R + L +++E SAK N N ++ F
Sbjct: 122 RV----VSAERGRQLADQLGFEFFEASAKENINVKQVF 155
|
The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 165 |
| >gnl|CDD|206699 cd04120, Rab12, Rab GTPase family 12 (Rab12) | Back alignment and domain information |
|---|
Score = 83.5 bits (206), Expect = 2e-20
Identities = 47/157 (29%), Positives = 88/157 (56%), Gaps = 4/157 (2%)
Query: 15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK 74
+++I+G G GKT+ ++R F + + T+GV+ KIR WDTAGQE+
Sbjct: 2 QVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQER 61
Query: 75 FGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCR-VCENIPIVLCGNKVDVK-NR 132
F + YY + I+++D+T + T+ ++P W + + + E+ ++L GNK+D + +R
Sbjct: 62 FNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCETDR 121
Query: 133 QVKAKQVT--FHRKKNLQYYEISAKSNYNFEKPFLYL 167
++ +Q + +++ E SAK N+N ++ FL L
Sbjct: 122 EITRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKL 158
|
Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 202 |
| >gnl|CDD|240385 PTZ00369, PTZ00369, Ras-like protein; Provisional | Back alignment and domain information |
|---|
Score = 83.0 bits (205), Expect = 2e-20
Identities = 49/172 (28%), Positives = 85/172 (49%), Gaps = 25/172 (14%)
Query: 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTI----------GVEVHPLDFFTNCGKIR 63
+KLV+VG GG GK+ + + F +Y+PTI E LD
Sbjct: 6 YKLVVVGGGGVGKSALTIQFIQNHFIDEYDPTIEDSYRKQCVIDEETCLLDIL------- 58
Query: 64 FYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCEN--IPIV 121
DTAGQE++ +RD Y GQ + ++ +T+R +++ + ++ + RV + +P++
Sbjct: 59 ----DTAGQEEYSAMRDQYMRTGQGFLCVYSITSRSSFEEIASFREQILRVKDKDRVPMI 114
Query: 122 LCGNKVDVKN-RQVKAKQ-VTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
L GNK D+ + RQV + + + + E SAK N ++ F L R++
Sbjct: 115 LVGNKCDLDSERQVSTGEGQELAKSFGIPFLETSAKQRVNVDEAFYELVREI 166
|
Length = 189 |
| >gnl|CDD|133319 cd04119, RJL, Rab GTPase family J-like (RabJ-like) | Back alignment and domain information |
|---|
Score = 82.0 bits (203), Expect = 4e-20
Identities = 46/167 (27%), Positives = 88/167 (52%), Gaps = 12/167 (7%)
Query: 15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVE--VHPLDFFTNCGKIRFYCWDTAGQ 72
K++ +G+ G GK+ +KR+ G F KY PTIG++ V + N ++R +D +G
Sbjct: 2 KVISMGNSGVGKSCIIKRYCEGRFVSKYLPTIGIDYGVKKVS-VRNK-EVRVNFFDLSGH 59
Query: 73 EKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDL------CRVCENIPIVLCGNK 126
++ +R+ +Y Q ++++DVT R +++ + +W +++ ENI +V+C NK
Sbjct: 60 PEYLEVRNEFYKDTQGVLLVYDVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANK 119
Query: 127 VD-VKNRQVKAKQ-VTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
+D K+R V + + K +Y+E SA + + F L +
Sbjct: 120 IDLTKHRAVSEDEGRLWAESKGFKYFETSACTGEGVNEMFQTLFSSI 166
|
RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Length = 168 |
| >gnl|CDD|206694 cd04109, Rab28, Rab GTPase family 28 (Rab28) | Back alignment and domain information |
|---|
Score = 81.8 bits (202), Expect = 1e-19
Identities = 55/175 (31%), Positives = 90/175 (51%), Gaps = 23/175 (13%)
Query: 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRF--------Y 65
K+V++GDG +GKT+ ++R F K Y+ TIG+ DFF+ +I
Sbjct: 1 IKIVVLGDGASGKTSLIRRFAQEGFGKSYKQTIGL-----DFFSR--RITLPGSLNVTLQ 53
Query: 66 CWDTAGQEKFGGLRDGYYIHG-QCAIIMFDVTARLTYKNVPTWHRDLCRVCEN----IPI 120
WD GQ+ G + D YI+G Q +++D+T +++N+ W + +V E +
Sbjct: 54 VWDIGGQQIGGKMLDK-YIYGAQAVCLVYDITNSQSFENLEDWLSVVKKVNEESETKPKM 112
Query: 121 VLCGNKVDV-KNRQVKA-KQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAG 173
VL GNK D+ NRQV A K F ++ +++ +SAK+ F +A +L G
Sbjct: 113 VLVGNKTDLEHNRQVTAEKHARFAQENDMESIFVSAKTGDRVFLCFQRIAAELLG 167
|
Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumably the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 213 |
| >gnl|CDD|133377 cd04177, RSR1, RSR1/Bud1p family GTPase | Back alignment and domain information |
|---|
Score = 79.8 bits (197), Expect = 2e-19
Identities = 48/169 (28%), Positives = 88/169 (52%), Gaps = 18/169 (10%)
Query: 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTI------GVEVHPLDFFTNCGKIRFYCW 67
+K+V++G GG GK+ + + F + Y+PTI VE+
Sbjct: 2 YKIVVLGAGGVGKSALTVQFVQNVFIESYDPTIEDSYRKQVEIDGRQCDLEI-------L 54
Query: 68 DTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGN 125
DTAG E+F +R+ Y GQ ++++ VT+ + + + R+ +N+P+VL GN
Sbjct: 55 DTAGTEQFTAMRELYIKSGQGFLLVYSVTSEASLNELGELREQVLRIKDSDNVPMVLVGN 114
Query: 126 KVDVKN-RQV-KAKQVTFHRK-KNLQYYEISAKSNYNFEKPFLYLARKL 171
K D+++ RQV + V+ ++ N+ +YE SA+ N ++ F+ L R++
Sbjct: 115 KADLEDDRQVSREDGVSLSQQWGNVPFYETSARKRTNVDEVFIDLVRQI 163
|
RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 168 |
| >gnl|CDD|133344 cd04144, Ras2, Rat sarcoma (Ras) family 2 of small guanosine triphosphatases (GTPases) | Back alignment and domain information |
|---|
Score = 79.9 bits (197), Expect = 3e-19
Identities = 50/163 (30%), Positives = 83/163 (50%), Gaps = 7/163 (4%)
Query: 15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK 74
KLV++GDGG GKT + F + Y+PTI + + + DTAGQE+
Sbjct: 1 KLVVLGDGGVGKTALTIQLCLNHFVETYDPTIE-DSYRKQVVVDGQPCMLEVLDTAGQEE 59
Query: 75 FGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCEN----IPIVLCGNKVDVK 130
+ LRD + G+ I+++ +T+R T++ V + + RV + +PI++ GNK D
Sbjct: 60 YTALRDQWIREGEGFILVYSITSRSTFERVERFREQIQRVKDESAADVPIMIVGNKCDKV 119
Query: 131 NRQVKAKQ--VTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
+ + + R+ ++ E SAK+N N E+ F L R L
Sbjct: 120 YEREVSTEEGAALARRLGCEFIEASAKTNVNVERAFYTLVRAL 162
|
The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 190 |
| >gnl|CDD|206688 cd04101, RabL4, Rab GTPase-like family 4 (Rab-like4) | Back alignment and domain information |
|---|
Score = 77.6 bits (191), Expect = 1e-18
Identities = 51/168 (30%), Positives = 81/168 (48%), Gaps = 18/168 (10%)
Query: 15 KLVIVGDGGTGKTTFVKR-HLTG-EFEKKYEPTIGVEVH----PLDFFTNCGKIRFYCWD 68
+ +VGD GK+ V+ H G F+K Y T G ++ P+ ++ + + +D
Sbjct: 2 QCAVVGDPAVGKSALVQMFHSDGATFQKNYTMTTGCDLVVKTVPVPDTSD--SVELFIFD 59
Query: 69 TAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCEN-----IPIVLC 123
+AGQE F + + + +++DVT +++ N W + RV + P VL
Sbjct: 60 SAGQELFSDMVENVWEQPAVVCVVYDVTNEVSFNNCSRW---INRVRTHSHGLHTPGVLV 116
Query: 124 GNKVD-VKNRQVKAKQVT-FHRKKNLQYYEISAKSNYNFEKPFLYLAR 169
GNK D R+V A Q + L++YE SAK +E PFL LAR
Sbjct: 117 GNKCDLTDRREVDAAQAQALAQANTLKFYETSAKEGVGYEAPFLSLAR 164
|
RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown. Length = 167 |
| >gnl|CDD|206702 cd04129, Rho2, Ras homology family 2 (Rho2) of small guanosine triphosphatases (GTPases) | Back alignment and domain information |
|---|
Score = 78.0 bits (192), Expect = 2e-18
Identities = 52/169 (30%), Positives = 79/169 (46%), Gaps = 15/169 (8%)
Query: 15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK 74
KLVIVGDG GKT+ + GEF ++Y PT+ E + D + ++ WDTAGQE+
Sbjct: 3 KLVIVGDGACGKTSLLYVFTLGEFPEEYHPTV-FENYVTDCRVDGKPVQLALWDTAGQEE 61
Query: 75 FGGLRDGYYIHGQCAIIMFDVTARLTYKNVPT-WHRDLCRVCENIPIVLCGNKVDV---- 129
+ LR Y +I F + + +NV T W ++ R C N+P++L G K D+
Sbjct: 62 YERLRPLSYSKAHVILIGFAIDTPDSLENVRTKWIEEVRRYCPNVPVILVGLKKDLRQEA 121
Query: 130 --KNRQVKAKQVTFHRKKNL-------QYYEISAKSNYNFEKPFLYLAR 169
K + V + K + +Y E SA + + F R
Sbjct: 122 VAKGNYATDEFVPIQQAKLVARAIGAKKYMECSALTGEGVDDVFEAATR 170
|
Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors). Length = 190 |
| >gnl|CDD|133277 cd01875, RhoG, Ras homolog family, member G (RhoG) of small guanosine triphosphatases (GTPases) | Back alignment and domain information |
|---|
Score = 77.7 bits (191), Expect = 2e-18
Identities = 44/120 (36%), Positives = 65/120 (54%), Gaps = 2/120 (1%)
Query: 13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQ 72
S K V+VGDG GKT + + T F K+Y PT+ + + + + WDTAGQ
Sbjct: 3 SIKCVVVGDGAVGKTCLLICYTTNAFPKEYIPTV-FDNYSAQTAVDGRTVSLNLWDTAGQ 61
Query: 73 EKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVP-TWHRDLCRVCENIPIVLCGNKVDVKN 131
E++ LR Y II F + + +Y+NV WH ++C C N+PI+L G K D++N
Sbjct: 62 EEYDRLRTLSYPQTNVFIICFSIASPSSYENVRHKWHPEVCHHCPNVPILLVGTKKDLRN 121
|
RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Length = 191 |
| >gnl|CDD|185444 PTZ00099, PTZ00099, rab6; Provisional | Back alignment and domain information |
|---|
Score = 77.5 bits (190), Expect = 3e-18
Identities = 44/137 (32%), Positives = 77/137 (56%), Gaps = 3/137 (2%)
Query: 38 FEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTA 97
F+ Y+ TIG++ + + G +R WDTAGQE+F L Y AI+++D+T
Sbjct: 5 FDNNYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITN 64
Query: 98 RLTYKNVPTWHRD-LCRVCENIPIVLCGNKVDVKN-RQVKAKQ-VTFHRKKNLQYYEISA 154
R +++N W +D L +++ I L GNK D+ + R+V ++ + ++ N ++E SA
Sbjct: 65 RQSFENTTKWIQDILNERGKDVIIALVGNKTDLGDLRKVTYEEGMQKAQEYNTMFHETSA 124
Query: 155 KSNYNFEKPFLYLARKL 171
K+ +N + F +A KL
Sbjct: 125 KAGHNIKVLFKKIAAKL 141
|
Length = 176 |
| >gnl|CDD|206693 cd04108, Rab36_Rab34, Rab GTPase families 34 (Rab34) and 36 (Rab36) | Back alignment and domain information |
|---|
Score = 75.7 bits (186), Expect = 9e-18
Identities = 48/162 (29%), Positives = 75/162 (46%), Gaps = 10/162 (6%)
Query: 15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK 74
K+++VGD GKT + R F+K Y+ TIGV+ F WDTAGQE+
Sbjct: 2 KVIVVGDLSVGKTCLINRFCKDVFDKNYKATIGVDFEMERFEVLGVPFSLQLWDTAGQER 61
Query: 75 FGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIP----IVLCGNKVDVK 130
F + YY Q II+FD+T + ++ W D + EN P + L G K D+
Sbjct: 62 FKCIASTYYRGAQAIIIVFDLTDVASLEHTRQWLEDALK--ENDPSSVLLFLVGTKKDLS 119
Query: 131 N----RQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLA 168
+ ++ + R+ +Y+ +SA + N F +A
Sbjct: 120 SPAQYALMEQDAIKLAREMKAEYWAVSALTGENVRDFFFRVA 161
|
Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 170 |
| >gnl|CDD|133343 cd04143, Rhes_like, Ras homolog enriched in striatum (Rhes) and activator of G-protein signaling 1 (Dexras1/AGS1) | Back alignment and domain information |
|---|
Score = 77.1 bits (190), Expect = 1e-17
Identities = 53/180 (29%), Positives = 81/180 (45%), Gaps = 38/180 (21%)
Query: 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCW-----D 68
+++V++G GKT V R L G FE++Y PTI DF IR + D
Sbjct: 1 YRMVVLGASKVGKTAIVSRFLGGRFEEQYTPTIE------DFHRKLYSIRGEVYQLDILD 54
Query: 69 TAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENI---------- 118
T+G F +R + G I++F + R +++ V CR+ E I
Sbjct: 55 TSGNHPFPAMRRLSILTGDVFILVFSLDNRESFEEV-------CRLREQILETKSCLKNK 107
Query: 119 -------PIVLCGNKVDVK-NRQVKAKQVT--FHRKKNLQYYEISAKSNYNFEKPFLYLA 168
P+V+CGNK D R+V+ +V +N Y+E+SAK N N ++ F L
Sbjct: 108 TKENVKIPMVICGNKADRDFPREVQRDEVEQLVGGDENCAYFEVSAKKNSNLDEMFRALF 167
|
This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression levels in other tissues. Dexras1 localizes primarily to the cytoplasm, and is a critical regulator of the circadian master clock to photic and nonphotic input. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 247 |
| >gnl|CDD|206712 cd04141, Rit_Rin_Ric, Ras-like protein in all tissues (Rit), Ras-like protein in neurons (Rin) and Ras-related protein which interacts with calmodulin (Ric) | Back alignment and domain information |
|---|
Score = 74.5 bits (183), Expect = 3e-17
Identities = 52/173 (30%), Positives = 84/173 (48%), Gaps = 25/173 (14%)
Query: 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTI----------GVEVHPLDFFTNCGKIR 63
+K+V++G GG GK+ + ++ F ++PTI E LD
Sbjct: 3 YKIVMLGAGGVGKSAVTMQFISHSFPDYHDPTIEDAYKTQARIDNEPALLDIL------- 55
Query: 64 FYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIV 121
DTAGQ +F +RD Y G+ II + VT R +++ + + RV E+IP+V
Sbjct: 56 ----DTAGQAEFTAMRDQYMRCGEGFIICYSVTDRHSFQEASEFKELITRVRLTEDIPLV 111
Query: 122 LCGNKVDVKN-RQVKAKQ-VTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLA 172
L GNKVD++ RQV ++ R+ N ++E SA + + F L R++
Sbjct: 112 LVGNKVDLEQQRQVTTEEGRNLAREFNCPFFETSAALRFYIDDAFHGLVREIR 164
|
Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to signal in parallel with the Ras pathway or stimulate the Ras pathway at some upstream point, and binding of calmodulin to Ric may negatively regulate Ric activity. Length = 172 |
| >gnl|CDD|133321 cd04121, Rab40, Rab GTPase family 40 (Rab40) contains Rab40a, Rab40b and Rab40c | Back alignment and domain information |
|---|
Score = 74.2 bits (182), Expect = 5e-17
Identities = 39/158 (24%), Positives = 76/158 (48%), Gaps = 2/158 (1%)
Query: 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
K ++VGD GK + G E Y +G++ + +++ WDT+GQ
Sbjct: 7 LKFLLVGDSDVGKGEILASLQDGSTESPYGYNMGIDYKTTTILLDGRRVKLQLWDTSGQG 66
Query: 74 KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVK-NR 132
+F + Y Q I+++D+T R ++ + W +++ +P +L GN++ + R
Sbjct: 67 RFCTIFRSYSRGAQGIILVYDITNRWSFDGIDRWIKEIDEHAPGVPKILVGNRLHLAFKR 126
Query: 133 QVKAKQV-TFHRKKNLQYYEISAKSNYNFEKPFLYLAR 169
QV +Q + + + ++E+S N+N + F LAR
Sbjct: 127 QVATEQAQAYAERNGMTFFEVSPLCNFNITESFTELAR 164
|
The Rab40 subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 189 |
| >gnl|CDD|206662 cd01870, RhoA_like, Ras homology family A (RhoA)-like includes RhoA, RhoB and RhoC | Back alignment and domain information |
|---|
Score = 73.6 bits (181), Expect = 6e-17
Identities = 48/159 (30%), Positives = 76/159 (47%), Gaps = 17/159 (10%)
Query: 15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK 74
KLVIVGDG GKT + +F + Y PT+ E + D + ++ WDTAGQE
Sbjct: 3 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV-FENYVADIEVDGKQVELALWDTAGQED 61
Query: 75 FGGLRDGYYIHGQCAIIMFDVTARLTYKNVP-TWHRDLCRVCENIPIVLCGNKVDVKN-- 131
+ LR Y ++ F + + + +N+P W ++ C N+PI+L GNK D++N
Sbjct: 62 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDE 121
Query: 132 ------RQVKAKQVTFHRKKNL-------QYYEISAKSN 157
++K + V + + Y E SAK+
Sbjct: 122 HTIRELAKMKQEPVKPEEGRAMAEKIGAFGYLECSAKTK 160
|
The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranylgeranylated forms; however, RhoB can be present in palmitoylated, farnesylated, and geranylgeranylated forms. RhoA and RhoC are highly relevant for tumor progression and invasiveness; however, RhoB has recently been suggested to be a tumor suppressor. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 175 |
| >gnl|CDD|206714 cd04147, Ras_dva, Ras - dorsal-ventral anterior localization (Ras-dva) family | Back alignment and domain information |
|---|
Score = 72.2 bits (177), Expect = 3e-16
Identities = 47/161 (29%), Positives = 78/161 (48%), Gaps = 6/161 (3%)
Query: 15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK 74
+LV +G G GKT ++R L FE K+ T+ E+H ++ K+ DT+G
Sbjct: 1 RLVFMGAAGVGKTALIQRFLYDTFEPKHRRTVE-ELHSKEYEVAGVKVTIDILDTSGSYS 59
Query: 75 FGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCEN--IPIVLCGNKVD-VKN 131
F +R +G +++ V +++ V ++ V E+ +PIV+ GNK+D +
Sbjct: 60 FPAMRKLSIQNGDAFALVYSVDDPESFEEVKRLREEILEVKEDKFVPIVVVGNKIDSLAE 119
Query: 132 RQVKAKQV--TFHRKKNLQYYEISAKSNYNFEKPFLYLARK 170
RQV+A T N + E SAK N N + F L ++
Sbjct: 120 RQVEAADALSTVELDWNNGFVEASAKDNENVTEVFKELLQQ 160
|
Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 197 |
| >gnl|CDD|133318 cd04118, Rab24, Rab GTPase family 24 (Rab24) | Back alignment and domain information |
|---|
Score = 70.7 bits (173), Expect = 1e-15
Identities = 45/161 (27%), Positives = 80/161 (49%), Gaps = 7/161 (4%)
Query: 15 KLVIVGDGGTGKTTFVKRHLTGEF-EKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
K+V++G GKT+ V+R++ F Y+ TIG + WDTAG E
Sbjct: 2 KVVMLGKESVGKTSLVERYVHHRFLVGPYQNTIGAAFVAKRMVVGERVVTLGIWDTAGSE 61
Query: 74 KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQ 133
++ + YY + AI+ +D+T +++ W ++L + E+ I LCG K D+ +
Sbjct: 62 RYEAMSRIYYRGAKAAIVCYDLTDSSSFERAKFWVKELQNLEEHCKIYLCGTKSDLIEQD 121
Query: 134 VKAKQVTFHRKKNL------QYYEISAKSNYNFEKPFLYLA 168
+QV FH ++ Q++E S+K+ N ++ F +A
Sbjct: 122 RSLRQVDFHDVQDFADEIKAQHFETSSKTGQNVDELFQKVA 162
|
Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 193 |
| >gnl|CDD|219856 pfam08477, Miro, Miro-like protein | Back alignment and domain information |
|---|
Score = 68.2 bits (167), Expect = 2e-15
Identities = 27/117 (23%), Positives = 53/117 (45%), Gaps = 7/117 (5%)
Query: 15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK 74
K+V++GD G+GK++ + + + GEF + G + + WD G+E+
Sbjct: 1 KVVVIGDKGSGKSSLLSQLVGGEFPPEPLEIQGDTLAVDTLEVDGDTGLLNIWDFGGREE 60
Query: 75 FGGLRDGYYIHGQC--AIIMFDVTARLTYKNVP---TWHRDLCRVCENIPIVLCGNK 126
+ ++++D+T R + V W +L ++ IP++L GNK
Sbjct: 61 L--KFEHIIFMKWADAILLVYDLTDRESLNEVSRLIAWLPNLRKLGGKIPVILVGNK 115
|
Mitochondrial Rho proteins (Miro-1, and Miro-2), are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (pfam00036), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis. Length = 116 |
| >gnl|CDD|206711 cd04140, ARHI_like, A Ras homolog member I (ARHI) | Back alignment and domain information |
|---|
Score = 68.7 bits (168), Expect = 4e-15
Identities = 44/159 (27%), Positives = 78/159 (49%), Gaps = 11/159 (6%)
Query: 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGK--IRFYCWDTAG 71
+++V+ G GG GK++ V R + G F + Y PTI + +C K DT G
Sbjct: 2 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQV---ISCSKSICTLQITDTTG 58
Query: 72 QEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCR----VCENIPIVLCGNKV 127
+F ++ G I+++ +T++ + + + + +C E IPI+L GNK
Sbjct: 59 SHQFPAMQRLSISKGHAFILVYSITSKQSLEELKPIYELICEIKGNNLEKIPIMLVGNKC 118
Query: 128 D-VKNRQVKAKQ-VTFHRKKNLQYYEISAKSNYNFEKPF 164
D +R+V + + R N + E SAK+N+N ++ F
Sbjct: 119 DESPSREVSSSEGAALARTWNCAFMETSAKTNHNVQELF 157
|
ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 165 |
| >gnl|CDD|206663 cd01871, Rac1_like, Ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)-like consists of Rac1, Rac2 and Rac3 | Back alignment and domain information |
|---|
Score = 67.5 bits (165), Expect = 1e-14
Identities = 39/146 (26%), Positives = 73/146 (50%), Gaps = 2/146 (1%)
Query: 13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQ 72
+ K V+VGDG GKT + + T F +Y PT+ + + + + + WDTAGQ
Sbjct: 1 AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGQ 59
Query: 73 EKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPT-WHRDLCRVCENIPIVLCGNKVDVKN 131
E + LR Y +I F + + +++NV W+ ++ C N PI+L G K+D+++
Sbjct: 60 EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRD 119
Query: 132 RQVKAKQVTFHRKKNLQYYEISAKSN 157
+ +++ + + Y + A +
Sbjct: 120 DKDTIEKLKEKKLTPITYPQGLAMAK 145
|
The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleotide association and is more efficiently activated by the RacGEF Tiam1. Both Rac1 and Rac3 have been implicated in the regulation of cell migration and invasion in human metastatic breast cancer. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 174 |
| >gnl|CDD|206703 cd04131, Rnd, Rho family GTPase subfamily Rnd includes Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8 | Back alignment and domain information |
|---|
Score = 67.1 bits (164), Expect = 2e-14
Identities = 34/118 (28%), Positives = 56/118 (47%), Gaps = 2/118 (1%)
Query: 15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK 74
K+V+VGD GKT ++ F + Y PT+ E + F + +I WDT+G
Sbjct: 3 KIVLVGDSQCGKTALLQVFAKDSFPENYVPTV-FENYTASFEVDKQRIELSLWDTSGSPY 61
Query: 75 FGGLRDGYYIHGQCAIIMFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGNKVDVKN 131
+ +R Y +I FD++ T +V W ++ C N P++L G K D++
Sbjct: 62 YDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEVREFCPNTPVLLVGCKSDLRT 119
|
The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 176 |
| >gnl|CDD|206709 cd04137, RheB, Ras Homolog Enriched in Brain (RheB) is a small GTPase | Back alignment and domain information |
|---|
Score = 66.9 bits (164), Expect = 3e-14
Identities = 46/162 (28%), Positives = 79/162 (48%), Gaps = 21/162 (12%)
Query: 15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIG------VEVHPLDFFTNCGKIRFYCWD 68
K+ ++G GK++ + + G F + Y PTI + ++ + + D
Sbjct: 3 KIAVLGSRSVGKSSLTVQFVEGHFVESYYPTIENTFSKIITYKGQEY--HLEIV-----D 55
Query: 69 TAGQEKFGGLRDGYY--IHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCG 124
TAGQ+++ L Y IHG I+++ VT+R +++ V + + + E++PIVL G
Sbjct: 56 TAGQDEYSILPQKYSIGIHG--YILVYSVTSRKSFEVVKVIYDKILDMLGKESVPIVLVG 113
Query: 125 NKVDVKN-RQVKAKQ-VTFHRKKNLQYYEISAKSNYNFEKPF 164
NK D+ RQV A++ + E SAK N N E+ F
Sbjct: 114 NKSDLHMERQVSAEEGKKLAESWGAAFLESSAKENENVEEAF 155
|
Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that leads to cell growth and cell-cycle progression. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 180 |
| >gnl|CDD|133330 cd04130, Wrch_1, Wnt-1 responsive Cdc42 homolog (Wrch-1) is a Rho family GTPase similar to Cdc42 | Back alignment and domain information |
|---|
Score = 65.5 bits (160), Expect = 7e-14
Identities = 45/171 (26%), Positives = 75/171 (43%), Gaps = 27/171 (15%)
Query: 15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFT-----NCGKIRFYCWDT 69
K V+VGDG GKT+ + + T + +Y PT D F+ + +R DT
Sbjct: 2 KCVLVGDGAVGKTSLIVSYTTNGYPTEYVPT------AFDNFSVVVLVDGKPVRLQLCDT 55
Query: 70 AGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPT-WHRDLCRVCENIPIVLCGNKVD 128
AGQ++F LR Y ++ F V +++N+ W ++ + PI+L G + D
Sbjct: 56 AGQDEFDKLRPLCYPDTDVFLLCFSVVNPSSFQNISEKWIPEIRKHNPKAPIILVGTQAD 115
Query: 129 --------VKNRQVKAKQVTFHRKKNL-------QYYEISAKSNYNFEKPF 164
++ + K V+ R K L +Y E SA + N ++ F
Sbjct: 116 LRTDVNVLIQLARYGEKPVSQSRAKALAEKIGACEYIECSALTQKNLKEVF 166
|
Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 173 |
| >gnl|CDD|206664 cd01874, Cdc42, cell division cycle 42 (Cdc42) is a small GTPase of the Rho family | Back alignment and domain information |
|---|
Score = 62.2 bits (151), Expect = 1e-12
Identities = 38/130 (29%), Positives = 60/130 (46%), Gaps = 22/130 (16%)
Query: 13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPT----------IGVEVHPLDFFTNCGKI 62
+ K V+VGDG GKT + + T +F +Y PT IG E + L F
Sbjct: 1 TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLF------ 54
Query: 63 RFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNV-PTWHRDLCRVCENIPIV 121
DTAGQE + LR Y ++ F V + +++NV W ++ C P +
Sbjct: 55 -----DTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFL 109
Query: 122 LCGNKVDVKN 131
L G ++D+++
Sbjct: 110 LVGTQIDLRD 119
|
Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addition, Cdc42 has been implicated in a number of human diseases through interactions with its regulators and downstream effectors. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 175 |
| >gnl|CDD|206705 cd04133, Rop_like, Rho-related protein from plants (Rop)-like | Back alignment and domain information |
|---|
Score = 61.8 bits (150), Expect = 2e-12
Identities = 38/123 (30%), Positives = 59/123 (47%), Gaps = 12/123 (9%)
Query: 15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFT-----NCGKIRFYCWDT 69
K V VGDG GKT + + + F Y PT+ D F+ + + WDT
Sbjct: 3 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTV------FDNFSANVVVDGNTVNLGLWDT 56
Query: 70 AGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGNKVD 128
AGQE + LR Y ++ F + ++ +Y+NV W +L +PIVL G K+D
Sbjct: 57 AGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVLKKWIPELRHYAPGVPIVLVGTKLD 116
Query: 129 VKN 131
+++
Sbjct: 117 LRD 119
|
The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example, Rop1, Rop3, and Rop5 are all involved in pollen-tube growth; Rop2 plays a role in response to low-oxygen environments, cell-morphology, and root-hair development; root-hair development is also regulated by Rop4 and Rop6; Rop6 is also responsible for ABA response, and ABA response is also regulated by Rop10. Plants retain some of the regulatory mechanisms that are shared by other members of the Rho family, but have also developed a number of unique modes for regulating Rops. Unique RhoGEFs have been identified that are exclusively active toward Rop proteins, such as those containing the domain PRONE (plant-specific Rop nucleotide exchanger). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 173 |
| >gnl|CDD|206644 cd00878, Arf_Arl, ADP-ribosylation factor(Arf)/Arf-like (Arl) small GTPases | Back alignment and domain information |
|---|
Score = 60.3 bits (147), Expect = 4e-12
Identities = 33/163 (20%), Positives = 68/163 (41%), Gaps = 18/163 (11%)
Query: 15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK 74
+++++G G GKTT + + GE PTIG V +++ ++F WD GQ+K
Sbjct: 1 RILMLGLDGAGKTTILYKLKLGEVVTTI-PTIGFNVETVEY----KNVKFTVWDVGGQDK 55
Query: 75 FGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCE-----NIPIVLCGNKVDV 129
L YY + I + D + R + + +L ++ P+++ NK D+
Sbjct: 56 IRPLWKHYYENTDGLIFVVDSSDR---ERIEEAKNELHKLLNEEELKGAPLLILANKQDL 112
Query: 130 KNRQVKAK-----QVTFHRKKNLQYYEISAKSNYNFEKPFLYL 167
+++ + + + SA + ++ +L
Sbjct: 113 PGALTESELIELLGLESIKGRRWHIQPCSAVTGDGLDEGLDWL 155
|
Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thus, despite their significant sequence homologies, Arf family proteins may regulate unrelated functions. Length = 158 |
| >gnl|CDD|206735 cd04172, Rnd3_RhoE_Rho8, Rnd3/RhoE/Rho8 GTPases | Back alignment and domain information |
|---|
Score = 59.3 bits (143), Expect = 2e-11
Identities = 36/152 (23%), Positives = 67/152 (44%), Gaps = 2/152 (1%)
Query: 15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK 74
K+V+VGD GKT + F + Y PT+ E + F + +I WDT+G
Sbjct: 7 KIVVVGDSQCGKTALLHVFAKDCFPENYVPTV-FENYTASFEIDTQRIELSLWDTSGSPY 65
Query: 75 FGGLRDGYYIHGQCAIIMFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGNKVDVKNRQ 133
+ +R Y +I FD++ T +V W ++ C N ++L G K D++
Sbjct: 66 YDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDV 125
Query: 134 VKAKQVTFHRKKNLQYYEISAKSNYNFEKPFL 165
+++ HR+ + Y + + + ++
Sbjct: 126 STLVELSNHRQTPVSYDQGANMAKQIGAATYI 157
|
Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight junction formation. Rnd3/RhoE is underexpressed in prostate cancer cells both in vitro and in vivo; re-expression of Rnd3/RhoE suppresses cell cycle progression and increases apoptosis, suggesting it may play a role in tumor suppression. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 182 |
| >gnl|CDD|206741 cd09914, RocCOR, Ras of complex proteins (Roc) C-terminal of Roc (COR) domain family | Back alignment and domain information |
|---|
Score = 58.9 bits (143), Expect = 2e-11
Identities = 35/151 (23%), Positives = 58/151 (38%), Gaps = 3/151 (1%)
Query: 15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG-KIRFYCWDTAGQE 73
KL++VG GG GKT+ K+ + +F+ T G+ V KIR WD GQE
Sbjct: 3 KLMLVGQGGVGKTSLCKQLIGEKFDGDESSTHGINVQDWKIPAPERKKIRLNVWDFGGQE 62
Query: 74 KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVK--N 131
+ + +++FD+ VP W R + P++L G +D
Sbjct: 63 IYHATHQFFLTSRSLYLLVFDLRTGDEVSRVPYWLRQIKAFGGVSPVILVGTHIDESCDE 122
Query: 132 RQVKAKQVTFHRKKNLQYYEISAKSNYNFEK 162
+K + +S K+ +
Sbjct: 123 DILKKALNKKFPAIINDIHFVSCKNGKGIAE 153
|
RocCOR (or Roco) protein family is characterized by a superdomain containing a Ras-like GTPase domain, called Roc (Ras of complex proteins), and a characteristic second domain called COR (C-terminal of Roc). A kinase domain and diverse regulatory domains are also often found in Roco proteins. Their functions are diverse; in Dictyostelium discoideum, which encodes 11 Roco proteins, they are involved in cell division, chemotaxis and development, while in human, where 4 Roco proteins (LRRK1, LRRK2, DAPK1, and MFHAS1) are encoded, these proteins are involved in epilepsy and cancer. Mutations in LRRK2 (leucine-rich repeat kinase 2) are known to cause familial Parkinson's disease. Length = 161 |
| >gnl|CDD|206701 cd04128, Spg1, Septum-promoting GTPase (Spg1) | Back alignment and domain information |
|---|
Score = 57.8 bits (140), Expect = 6e-11
Identities = 37/119 (31%), Positives = 59/119 (49%), Gaps = 10/119 (8%)
Query: 15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK 74
K+ ++GD GKT+ + +++ GEF+++Y T+GV +I F WD GQ +
Sbjct: 2 KIGLLGDAQIGKTSLMVKYVEGEFDEEYIQTLGVNFMEKTISIRGTEITFSIWDLGGQRE 61
Query: 75 FGGLRDGYYI--HGQCAII-MFDVTARLTYKNVPTWHRDLCRVCEN--IPIVLCGNKVD 128
F + + AI+ MFD+T + T ++ W+R R IPI L G K D
Sbjct: 62 F---INMLPLVCKDAVAILFMFDLTRKSTLNSIKEWYRQ-ARGFNKTAIPI-LVGTKYD 115
|
Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Length = 182 |
| >gnl|CDD|206707 cd04135, Tc10, Rho GTPase TC10 (Tc10) | Back alignment and domain information |
|---|
Score = 56.9 bits (137), Expect = 1e-10
Identities = 36/124 (29%), Positives = 59/124 (47%), Gaps = 12/124 (9%)
Query: 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFT---NCGKIRFY--CWD 68
K V+VGDG GKT + + F ++Y PT+ D + G ++ +D
Sbjct: 1 LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTV------FDHYAVSVTVGGKQYLLGLYD 54
Query: 69 TAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGNKV 127
TAGQE + LR Y +I F V +++NV W +L N+P +L G ++
Sbjct: 55 TAGQEDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPYLLIGTQI 114
Query: 128 DVKN 131
D+++
Sbjct: 115 DLRD 118
|
TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interactions with CFTR-associated ligand (CAL). The GTP-bound form of TC10 directs the trafficking of CFTR from the juxtanuclear region to the secretory pathway toward the plasma membrane, away from CAL-mediated DFTR degradation in the lysosome. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 174 |
| >gnl|CDD|133326 cd04126, Rab20, Rab GTPase family 20 (Rab20) | Back alignment and domain information |
|---|
Score = 57.2 bits (138), Expect = 2e-10
Identities = 48/193 (24%), Positives = 75/193 (38%), Gaps = 45/193 (23%)
Query: 15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK 74
K+V++GD GKT+ + R++ F K T+G + G WDTAG+E+
Sbjct: 2 KVVLLGDMNVGKTSLLHRYMERRF-KDTVSTVGGAF----YLKQWGPYNISIWDTAGREQ 56
Query: 75 FGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLC---RVCENIPIVLCGNKVDVKN 131
F GL Y I+ +DV+ + + + R L E+ + GNK+D+
Sbjct: 57 FHGLGSMYCRGAAAVILTYDVSNVQSLEEL--EDRFLGLTDTANEDCLFAVVGNKLDLTE 114
Query: 132 RQVKA---------------KQVTFH----------RKKNLQ----------YYEISAKS 156
A +QVT + K L +E SAK+
Sbjct: 115 EGALAGQEKDAGDRVSPEDQRQVTLEDAKAFYKRINKYKMLDEDLSPAAEKMCFETSAKT 174
Query: 157 NYNFEKPFLYLAR 169
YN ++ F YL
Sbjct: 175 GYNVDELFEYLFN 187
|
Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 220 |
| >gnl|CDD|206724 cd04159, Arl10_like, Arf-like 9 (Arl9) and 10 (Arl10) GTPases | Back alignment and domain information |
|---|
Score = 56.2 bits (136), Expect = 2e-10
Identities = 36/154 (23%), Positives = 62/154 (40%), Gaps = 17/154 (11%)
Query: 16 LVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKF 75
+ +VG +GKTT V +G+F + PT+G + + G + WD GQ +F
Sbjct: 2 ITLVGLQNSGKTTLVNVIASGQFSEDTIPTVGFNMRKV----TKGNVTIKVWDLGGQPRF 57
Query: 76 GGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCE-----NIPIVLCGNKVDVK 130
+ + Y + + D R + +L + E IP+++ GNK D+
Sbjct: 58 RSMWERYCRGVNAIVYVVDAADRE---KLEVAKNELHDLLEKPSLEGIPLLVLGNKNDLP 114
Query: 131 NRQVKAKQVTFHRKKNLQ-----YYEISAKSNYN 159
+ + K++ Y ISAK N
Sbjct: 115 GALSVDELIEQMNLKSITDREVSCYSISAKEKTN 148
|
Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved. Length = 159 |
| >gnl|CDD|206713 cd04146, RERG_RasL11_like, Ras-related and Estrogen-Regulated Growth inhibitor (RERG) and Ras-like 11 (RasL11)-like families | Back alignment and domain information |
|---|
Score = 55.7 bits (135), Expect = 3e-10
Identities = 40/167 (23%), Positives = 72/167 (43%), Gaps = 38/167 (22%)
Query: 15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIG--------VEVHPLDFFTNCGKIRFYC 66
K+ ++G G GK+ R LT F +YEP + ++ + +I
Sbjct: 1 KIAVLGASGVGKSALTVRFLTKRFIGEYEPNLESLYSRQVTIDGEQVSL-----EI---- 51
Query: 67 WDTAGQEKFGG-------LR--DGYYIHGQCAIIMFDVTARLTYKNVPTWH---RDLCRV 114
DT GQ++ LR DG+ ++++ +T R ++ V R++ +
Sbjct: 52 QDTPGQQQNEDPESLERSLRWADGF-------VLVYSITDRSSFDVVSQLLQLIREIKKR 104
Query: 115 CENIPIVLCGNKVDVKN-RQV-KAKQVTFHRKKNLQYYEISAKSNYN 159
IP++L GNK D+ + RQV + + ++E+SA NY
Sbjct: 105 DGEIPVILVGNKADLLHSRQVSTEEGQKLALELGCLFFEVSAAENYL 151
|
RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tumor suppressor activity. Length = 166 |
| >gnl|CDD|133353 cd04153, Arl5_Arl8, Arf-like 5 (Arl5) and 8 (Arl8) GTPases | Back alignment and domain information |
|---|
Score = 50.8 bits (122), Expect = 2e-08
Identities = 42/128 (32%), Positives = 57/128 (44%), Gaps = 25/128 (19%)
Query: 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
+K++IVG GKTT + + L GE PTIG V + + IRF WD GQE
Sbjct: 16 YKVIIVGLDNAGKTTILYQFLLGEVVHT-SPTIGSNVEEIVY----KNIRFLMWDIGGQE 70
Query: 74 KFGGLRDG---YYIHGQCAIIMFDVT--ARLT------YKNVPTWHRDLCRVCENIPIVL 122
LR YY + I++ D T RL YK + H DL +++
Sbjct: 71 S---LRSSWNTYYTNTDAVILVIDSTDRERLPLTKEELYKMLA--HEDL----RKAVLLV 121
Query: 123 CGNKVDVK 130
NK D+K
Sbjct: 122 LANKQDLK 129
|
Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date. Length = 174 |
| >gnl|CDD|206736 cd04173, Rnd2_Rho7, Rnd2/Rho7 GTPases | Back alignment and domain information |
|---|
Score = 50.8 bits (121), Expect = 3e-08
Identities = 33/117 (28%), Positives = 54/117 (46%), Gaps = 2/117 (1%)
Query: 15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK 74
K+V+VGD GKT + + + Y PT+ E + F + +I WDT+G
Sbjct: 3 KIVVVGDTQCGKTALLHVFAKDNYPESYVPTV-FENYTASFEIDKHRIELNMWDTSGSSY 61
Query: 75 FGGLRDGYYIHGQCAIIMFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGNKVDVK 130
+ +R Y +I FD++ T +V W + C N +VL G K+D++
Sbjct: 62 YDNVRPLAYPDSDAVLICFDISRPETLDSVLKKWQGETQEFCPNAKLVLVGCKLDMR 118
|
Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in spermatocytes and early spermatids, with male-germ-cell Rac GTPase-activating protein (MgcRacGAP), where it localizes to the Golgi-derived pro-acrosomal vesicle. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Length = 221 |
| >gnl|CDD|206725 cd04160, Arfrp1, Arf-related protein 1 (Arfrp1) | Back alignment and domain information |
|---|
Score = 46.6 bits (111), Expect = 6e-07
Identities = 37/131 (28%), Positives = 60/131 (45%), Gaps = 25/131 (19%)
Query: 17 VIVGDGGTGKTTFVKRHLTGEFEKKYE--------PTIGVEVHPLDFFTNCGKIRFYCWD 68
+I+G GKTTF+++ T +F K Y+ PT+G+ + ++ GK R WD
Sbjct: 3 LILGLDNAGKTTFLEQTKT-KFSKNYKGLNPSKITPTVGLNIGTIEV----GKARLMFWD 57
Query: 69 TAGQEKFGGLRDGYYIHGQCAIIMFDVT--ARL-----TYKNVPTWHRDLCRVCENIPIV 121
GQE+ L D YY I + D T R ++ V + L E +P++
Sbjct: 58 LGGQEELRSLWDKYYAESHGVIYVIDSTDRERFNESKSAFEKVIN-NEAL----EGVPLL 112
Query: 122 LCGNKVDVKNR 132
+ NK D+ +
Sbjct: 113 VLANKQDLPDA 123
|
Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development. Length = 168 |
| >gnl|CDD|206715 cd04148, RGK, Rem, Rem2, Rad, Gem/Kir (RGK) subfamily of Ras GTPases | Back alignment and domain information |
|---|
Score = 46.6 bits (111), Expect = 9e-07
Identities = 44/163 (26%), Positives = 71/163 (43%), Gaps = 30/163 (18%)
Query: 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKK---------YEPTIGVEVHPLDFFTNCGKIRF 64
+++V++GD G GK++ G +E YE T+ V+ +
Sbjct: 1 YRVVLLGDSGVGKSSLANIFTAGVYEDSAYEASGDDTYERTVSVDGEEAT-------LVV 53
Query: 65 YCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDL--CRVCENIPIVL 122
Y D QE L D G +I++ VT R +++ L R E+IPI+L
Sbjct: 54 Y--DHWEQEDGMWLEDSCMQVGDAYVIVYSVTDRSSFEKASELRIQLRRARQAEDIPIIL 111
Query: 123 CGNKVD-VKNRQV-----KAKQVTFHRKKNLQYYEISAKSNYN 159
GNK D V++R+V +A V F + ++ E SA +N
Sbjct: 112 VGNKSDLVRSREVSVQEGRACAVVF----DCKFIETSAALQHN 150
|
RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ras superfamily members. The N-terminal extension is not conserved among family members; the C-terminal extension is reported to be conserved among the family and lack the CaaX prenylation motif typical of membrane-associated Ras proteins. However, a putative CaaX motif has been identified in the alignment of the C-terminal residues of this CD. Length = 219 |
| >gnl|CDD|133342 cd04142, RRP22, Ras-related protein on chromosome 22 (RRP22) family | Back alignment and domain information |
|---|
Score = 44.5 bits (105), Expect = 5e-06
Identities = 41/166 (24%), Positives = 72/166 (43%), Gaps = 25/166 (15%)
Query: 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWD----- 68
++ ++G G GKT V++ L EF ++Y PT ++ + + D
Sbjct: 1 VRVAVLGAPGVGKTAIVRQFLAQEFPEEYIPTEHRRLYRPAVVLSGRVYDLHILDVPNMQ 60
Query: 69 ----TAGQE----KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDL--CRVCEN- 117
TAGQE +F GLR+ + I+++D+ + ++ V + + R N
Sbjct: 61 RYPGTAGQEWMDPRFRGLRN-----SRAFILVYDICSPDSFHYVKLLRQQILETRPAGNK 115
Query: 118 -IPIVLCGNKVDVKNRQVKAKQVTFH---RKKNLQYYEISAKSNYN 159
PIV+ GNK D + + + V + Y E SAK N++
Sbjct: 116 EPPIVVVGNKRDQQRHRFAPRHVLSVLVRKSWKCGYLECSAKYNWH 161
|
RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated. Length = 198 |
| >gnl|CDD|200938 pfam00025, Arf, ADP-ribosylation factor family | Back alignment and domain information |
|---|
Score = 44.1 bits (105), Expect = 5e-06
Identities = 29/124 (23%), Positives = 50/124 (40%), Gaps = 13/124 (10%)
Query: 13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQ 72
+++I+G GKTT + + GE PTIG V + + ++F WD GQ
Sbjct: 14 EMRILILGLDNAGKTTILYKLKLGEI-VTTIPTIGFNVETVTY----KNVKFTVWDVGGQ 68
Query: 73 EKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCE-----NIPIVLCGNKV 127
E L Y+ + I + D R + +L + + P+++ NK
Sbjct: 69 ESLRPLWRNYFPNTDAVIFVVDSADR---DRIEEAKEELHALLNEEELADAPLLILANKQ 125
Query: 128 DVKN 131
D+
Sbjct: 126 DLPG 129
|
Pfam combines a number of different Prosite families together. Length = 174 |
| >gnl|CDD|206737 cd04174, Rnd1_Rho6, Rnd1/Rho6 GTPases | Back alignment and domain information |
|---|
Score = 44.3 bits (104), Expect = 7e-06
Identities = 31/141 (21%), Positives = 63/141 (44%), Gaps = 2/141 (1%)
Query: 15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK 74
KLV+VGD GKT ++ + + Y PT+ E + T ++ WDT+G
Sbjct: 15 KLVLVGDVQCGKTAMLQVLAKDCYPETYVPTV-FENYTACLETEEQRVELSLWDTSGSPY 73
Query: 75 FGGLRDGYYIHGQCAIIMFDVTARLTYKN-VPTWHRDLCRVCENIPIVLCGNKVDVKNRQ 133
+ +R Y ++ FD++ + + + W ++ C + I+L G K D++
Sbjct: 74 YDNVRPLCYSDSDAVLLCFDISRPEIFDSALKKWRAEILDYCPSTRILLIGCKTDLRTDL 133
Query: 134 VKAKQVTFHRKKNLQYYEISA 154
+++ ++ + Y + A
Sbjct: 134 STLMELSNQKQAPISYEQGCA 154
|
Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 232 |
| >gnl|CDD|206723 cd04158, ARD1, (ADP-ribosylation factor domain protein 1 (ARD1) | Back alignment and domain information |
|---|
Score = 43.5 bits (102), Expect = 1e-05
Identities = 25/84 (29%), Positives = 42/84 (50%), Gaps = 5/84 (5%)
Query: 15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK 74
++V +G G GKTT + + EF + PTIG V +++ ++F WD G+ K
Sbjct: 1 RVVTLGLDGAGKTTILFKLKQDEFMQPI-PTIGFNVETVEY----KNLKFTIWDVGGKHK 55
Query: 75 FGGLRDGYYIHGQCAIIMFDVTAR 98
L YY++ Q + + D + R
Sbjct: 56 LRPLWKHYYLNTQAVVFVIDSSHR 79
|
ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membrane. Two Tyr-based motifs in the Arf domain are responsible for Golgi localization, while the GAP domain controls lysosomal localization. Length = 169 |
| >gnl|CDD|206680 cd01893, Miro1, Mitochondrial Rho family 1 (Miro1), N-terminal | Back alignment and domain information |
|---|
Score = 42.3 bits (100), Expect = 2e-05
Identities = 42/173 (24%), Positives = 74/173 (42%), Gaps = 30/173 (17%)
Query: 15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEP-----TIGVEVHPLDFFTNCGKIRFYCWDT 69
++V++GD G GK++ + ++ EF + TI +V P T I DT
Sbjct: 4 RIVLIGDEGVGKSSLIMSLVSEEFPENVPRVLPEITIPADVTPERVPT---TIV----DT 56
Query: 70 AGQEKFGGLRDGYY--IHGQCAI-IMFDVTARLTYKNVPT-WHRDLCRVCENIPIVLCGN 125
+ + + R I I +++ V T + + T W + R+ +PI+L GN
Sbjct: 57 SSRPQ---DRANLAAEIRKANVICLVYSVDRPSTLERIRTKWLPLIRRLGVKVPIILVGN 113
Query: 126 KVDV--KNRQVKAKQV------TFHRKKNLQYYEISAKSNYNFEKPFLYLARK 170
K D+ + Q ++ F ++ E SAK+ N + F Y A+K
Sbjct: 114 KSDLRDGSSQAGLEEEMLPIMNEF--REIETCVECSAKTLINVSEVF-YYAQK 163
|
Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature. Length = 168 |
| >gnl|CDD|206722 cd04157, Arl6, Arf-like 6 (Arl6) GTPase | Back alignment and domain information |
|---|
Score = 41.6 bits (98), Expect = 4e-05
Identities = 34/130 (26%), Positives = 57/130 (43%), Gaps = 15/130 (11%)
Query: 16 LVIVGDGGTGKTTFVKRHLTGEFEKKYE--PTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
++++G +GKTT + L + PT+G ++ F G + F +D +GQ
Sbjct: 2 ILVLGLDNSGKTTIIN-QLKPSNAQSQNIVPTVG---FNVESFKK-GNLSFTAFDMSGQG 56
Query: 74 KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTW------HRDLCRVCENIPIVLCGNKV 127
K+ GL + YY + Q I + D + RL H D+ IPI+ NK+
Sbjct: 57 KYRGLWEHYYKNIQGIIFVIDSSDRLRMVVAKDELELLLNHPDIKH--RRIPILFYANKM 114
Query: 128 DVKNRQVKAK 137
D+ + K
Sbjct: 115 DLPDALTAVK 124
|
Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily. Length = 162 |
| >gnl|CDD|177661 PLN00023, PLN00023, GTP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 41.4 bits (97), Expect = 1e-04
Identities = 32/155 (20%), Positives = 56/155 (36%), Gaps = 46/155 (29%)
Query: 15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVH--------------------PLD 54
++++VGD G GK++ V + G + TIG V D
Sbjct: 23 RVLVVGDSGVGKSSLVHLIVKGSSIARPPQTIGCTVGVKHITYGSPGSSSNSIKGDSERD 82
Query: 55 FFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV 114
FF WD +G E++ R +Y I + D++ R T ++ W + V
Sbjct: 83 FFVE-------LWDVSGHERYKDCRSLFYSQINGVIFVHDLSQRRTKTSLQKWASE---V 132
Query: 115 CEN----------------IPIVLCGNKVDVKNRQ 133
+P ++ GNK D+ ++
Sbjct: 133 AATGTFSAPLGSGGPGGLPVPYIVIGNKADIAPKE 167
|
Length = 334 |
| >gnl|CDD|128474 smart00177, ARF, ARF-like small GTPases; ARF, ADP-ribosylation factor | Back alignment and domain information |
|---|
Score = 39.1 bits (91), Expect = 3e-04
Identities = 27/84 (32%), Positives = 38/84 (45%), Gaps = 5/84 (5%)
Query: 15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK 74
++++VG GKTT + + GE PTIG V + + I F WD GQ+K
Sbjct: 15 RILMVGLDAAGKTTILYKLKLGESVTTI-PTIGFNVETVTY----KNISFTVWDVGGQDK 69
Query: 75 FGGLRDGYYIHGQCAIIMFDVTAR 98
L YY + Q I + D R
Sbjct: 70 IRPLWRHYYTNTQGLIFVVDSNDR 93
|
Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop). Length = 175 |
| >gnl|CDD|165788 PLN00223, PLN00223, ADP-ribosylation factor; Provisional | Back alignment and domain information |
|---|
Score = 38.8 bits (90), Expect = 5e-04
Identities = 26/84 (30%), Positives = 39/84 (46%), Gaps = 5/84 (5%)
Query: 15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK 74
++++VG GKTT + + GE PTIG V +++ I F WD GQ+K
Sbjct: 19 RILMVGLDAAGKTTILYKLKLGEIVTTI-PTIGFNVETVEY----KNISFTVWDVGGQDK 73
Query: 75 FGGLRDGYYIHGQCAIIMFDVTAR 98
L Y+ + Q I + D R
Sbjct: 74 IRPLWRHYFQNTQGLIFVVDSNDR 97
|
Length = 181 |
| >gnl|CDD|133303 cd04103, Centaurin_gamma, Centaurin gamma (CENTG) GTPase | Back alignment and domain information |
|---|
Score = 38.2 bits (89), Expect = 6e-04
Identities = 47/170 (27%), Positives = 74/170 (43%), Gaps = 26/170 (15%)
Query: 15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIG---VEVHPLDFFTNCGKIRFYCWDTAG 71
KL IVG+ +GK+ V R+LTG + + P G EV +D ++ IR D G
Sbjct: 2 KLGIVGNLRSGKSALVHRYLTGSYVQLESPEGGRFKKEVL-VDGQSHLLLIR----DEGG 56
Query: 72 QE--KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLC--RVCENIPIVLCG--N 125
+F G D I +F + +++ V + L R IP++L G +
Sbjct: 57 APDAQFAGWVDA-------VIFVFSLEDEASFQTVYRLYHQLSSYRNISEIPLILVGTQD 109
Query: 126 KVDVKNRQV----KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
+ N +V +A+Q+ K YYE A N E+ F A+K+
Sbjct: 110 AISASNPRVIDDARARQLC-ADMKRCSYYETCATYGLNVERVFQEAAQKI 158
|
The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues. GGAP has been shown to have high GTPase activity due to a direct intramolecular interaction between the N-terminal GTPase domain and the C-terminal ArfGAP domain. In human tissue, AGAP mRNA was detected in skeletal muscle, kidney, placenta, brain, heart, colon, and lung. Reduced expression levels were also observed in the spleen, liver, and small intestine. Length = 158 |
| >gnl|CDD|173423 PTZ00133, PTZ00133, ADP-ribosylation factor; Provisional | Back alignment and domain information |
|---|
Score = 36.7 bits (85), Expect = 0.002
Identities = 25/84 (29%), Positives = 39/84 (46%), Gaps = 5/84 (5%)
Query: 15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK 74
++++VG GKTT + + GE PTIG V +++ ++F WD GQ+K
Sbjct: 19 RILMVGLDAAGKTTILYKLKLGEVVTTI-PTIGFNVETVEY----KNLKFTMWDVGGQDK 73
Query: 75 FGGLRDGYYIHGQCAIIMFDVTAR 98
L YY + I + D R
Sbjct: 74 LRPLWRHYYQNTNGLIFVVDSNDR 97
|
Length = 182 |
| >gnl|CDD|206717 cd04150, Arf1_5_like, ADP-ribosylation factor-1 (Arf1) and ADP-ribosylation factor-5 (Arf5) | Back alignment and domain information |
|---|
Score = 36.2 bits (84), Expect = 0.003
Identities = 26/84 (30%), Positives = 39/84 (46%), Gaps = 5/84 (5%)
Query: 15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK 74
++++VG GKTT + + GE PTIG V +++ I F WD GQ+K
Sbjct: 2 RILMVGLDAAGKTTILYKLKLGEIVTTI-PTIGFNVETVEY----KNISFTVWDVGGQDK 56
Query: 75 FGGLRDGYYIHGQCAIIMFDVTAR 98
L Y+ + Q I + D R
Sbjct: 57 IRPLWRHYFQNTQGLIFVVDSNDR 80
|
The Arf1-Arf5-like subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents and other lower eukaryotes, lack Arf2. Human Arf3 shares 96% sequence identity with Arf1 and is believed to generally function interchangeably with Arf1. Human Arf4 in the activated (GTP-bound) state has been shown to interact with the cytoplasmic domain of epidermal growth factor receptor (EGFR) and mediate the EGF-dependent activation of phospholipase D2 (PLD2), leading to activation of the activator protein 1 (AP-1) transcription factor. Arf4 has also been shown to recognize the C-terminal sorting signal of rhodopsin and regulate its incorporation into specialized post-Golgi rhodopsin transport carriers (RTCs). There is some evidence that Arf5 functions at the early-Golgi and the trans-Golgi to affect Golgi-associated alpha-adaptin homology Arf-binding proteins (GGAs). Length = 159 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 176 | |||
| KOG0084 | 205 | consensus GTPase Rab1/YPT1, small G protein superf | 100.0 | |
| KOG0092 | 200 | consensus GTPase Rab5/YPT51 and related small G pr | 100.0 | |
| KOG0094 | 221 | consensus GTPase Rab6/YPT6/Ryh1, small G protein s | 100.0 | |
| PLN03071 | 219 | GTP-binding nuclear protein Ran; Provisional | 100.0 | |
| KOG0080 | 209 | consensus GTPase Rab18, small G protein superfamil | 100.0 | |
| KOG0078 | 207 | consensus GTP-binding protein SEC4, small G protei | 100.0 | |
| KOG0098 | 216 | consensus GTPase Rab2, small G protein superfamily | 100.0 | |
| cd04121 | 189 | Rab40 Rab40 subfamily. This subfamily contains Rab | 100.0 | |
| cd04133 | 176 | Rop_like Rop subfamily. The Rop (Rho-related prote | 100.0 | |
| cd04120 | 202 | Rab12 Rab12 subfamily. Rab12 was first identified | 100.0 | |
| cd04172 | 182 | Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE | 100.0 | |
| cd00877 | 166 | Ran Ran (Ras-related nuclear proteins) /TC4 subfam | 100.0 | |
| cd01875 | 191 | RhoG RhoG subfamily. RhoG is a GTPase with high se | 100.0 | |
| KOG0394 | 210 | consensus Ras-related GTPase [General function pre | 100.0 | |
| cd04174 | 232 | Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a memb | 100.0 | |
| cd04131 | 178 | Rnd Rnd subfamily. The Rnd subfamily contains Rnd1 | 100.0 | |
| cd04122 | 166 | Rab14 Rab14 subfamily. Rab14 GTPases are localized | 100.0 | |
| cd04107 | 201 | Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 | 100.0 | |
| KOG0079 | 198 | consensus GTP-binding protein H-ray, small G prote | 100.0 | |
| smart00176 | 200 | RAN Ran (Ras-related nuclear proteins) /TC4 subfam | 100.0 | |
| cd04141 | 172 | Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like p | 100.0 | |
| KOG0087 | 222 | consensus GTPase Rab11/YPT3, small G protein super | 100.0 | |
| cd04128 | 182 | Spg1 Spg1p. Spg1p (septum-promoting GTPase) was fi | 100.0 | |
| KOG0093 | 193 | consensus GTPase Rab3, small G protein superfamily | 100.0 | |
| cd04124 | 161 | RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily | 100.0 | |
| cd04117 | 161 | Rab15 Rab15 subfamily. Rab15 colocalizes with the | 100.0 | |
| cd01874 | 175 | Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPas | 100.0 | |
| cd01865 | 165 | Rab3 Rab3 subfamily. The Rab3 subfamily contains R | 100.0 | |
| cd01869 | 166 | Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in ev | 100.0 | |
| cd01867 | 167 | Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Yp | 100.0 | |
| cd01871 | 174 | Rac1_like Rac1-like subfamily. The Rac1-like subfa | 100.0 | |
| cd04173 | 222 | Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a memb | 100.0 | |
| cd04119 | 168 | RJL RJL (RabJ-Like) subfamily. RJLs are found in m | 100.0 | |
| cd04127 | 180 | Rab27A Rab27a subfamily. The Rab27a subfamily cons | 100.0 | |
| cd04110 | 199 | Rab35 Rab35 subfamily. Rab35 is one of several Rab | 100.0 | |
| KOG0086 | 214 | consensus GTPase Rab4, small G protein superfamily | 100.0 | |
| PF00071 | 162 | Ras: Ras family; InterPro: IPR001806 Small GTPases | 100.0 | |
| cd04108 | 170 | Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found pr | 100.0 | |
| cd04175 | 164 | Rap1 Rap1 subgroup. The Rap1 subgroup is part of t | 100.0 | |
| PTZ00369 | 189 | Ras-like protein; Provisional | 100.0 | |
| cd04134 | 189 | Rho3 Rho3 subfamily. Rho3 is a member of the Rho f | 100.0 | |
| cd04136 | 163 | Rap_like Rap-like subfamily. The Rap subfamily con | 100.0 | |
| cd04106 | 162 | Rab23_lke Rab23-like subfamily. Rab23 is a member | 100.0 | |
| cd04125 | 188 | RabA_like RabA-like subfamily. RabA was first iden | 100.0 | |
| cd04109 | 215 | Rab28 Rab28 subfamily. First identified in maize, | 100.0 | |
| cd04112 | 191 | Rab26 Rab26 subfamily. First identified in rat pan | 100.0 | |
| cd04111 | 211 | Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 | 100.0 | |
| cd04113 | 161 | Rab4 Rab4 subfamily. Rab4 has been implicated in n | 100.0 | |
| cd04116 | 170 | Rab9 Rab9 subfamily. Rab9 is found in late endosom | 100.0 | |
| cd01868 | 165 | Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 a | 100.0 | |
| cd01866 | 168 | Rab2 Rab2 subfamily. Rab2 is localized on cis-Golg | 100.0 | |
| cd04132 | 187 | Rho4_like Rho4-like subfamily. Rho4 is a GTPase th | 100.0 | |
| cd04176 | 163 | Rap2 Rap2 subgroup. The Rap2 subgroup is part of t | 100.0 | |
| cd04118 | 193 | Rab24 Rab24 subfamily. Rab24 is distinct from othe | 100.0 | |
| cd04138 | 162 | H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, | 100.0 | |
| cd04144 | 190 | Ras2 Ras2 subfamily. The Ras2 subfamily, found exc | 100.0 | |
| cd01864 | 165 | Rab19 Rab19 subfamily. Rab19 proteins are associat | 100.0 | |
| cd01873 | 195 | RhoBTB RhoBTB subfamily. Members of the RhoBTB sub | 100.0 | |
| cd04140 | 165 | ARHI_like ARHI subfamily. ARHI (A Ras homolog memb | 100.0 | |
| KOG0095 | 213 | consensus GTPase Rab30, small G protein superfamil | 100.0 | |
| PLN03110 | 216 | Rab GTPase; Provisional | 100.0 | |
| cd04126 | 220 | Rab20 Rab20 subfamily. Rab20 is one of several Rab | 100.0 | |
| cd04115 | 170 | Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is u | 100.0 | |
| PTZ00132 | 215 | GTP-binding nuclear protein Ran; Provisional | 100.0 | |
| PLN03108 | 210 | Rab family protein; Provisional | 100.0 | |
| smart00174 | 174 | RHO Rho (Ras homology) subfamily of Ras-like small | 100.0 | |
| smart00175 | 164 | RAB Rab subfamily of small GTPases. Rab GTPases ar | 100.0 | |
| cd04145 | 164 | M_R_Ras_like M-Ras/R-Ras-like subfamily. This subf | 100.0 | |
| smart00173 | 164 | RAS Ras subfamily of RAS small GTPases. Similar in | 100.0 | |
| cd01860 | 163 | Rab5_related Rab5-related subfamily. This subfamil | 100.0 | |
| cd04101 | 164 | RabL4 RabL4 (Rab-like4) subfamily. RabL4s are nove | 100.0 | |
| cd04142 | 198 | RRP22 RRP22 subfamily. RRP22 (Ras-related protein | 100.0 | |
| cd01862 | 172 | Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase th | 100.0 | |
| KOG0091 | 213 | consensus GTPase Rab39, small G protein superfamil | 100.0 | |
| KOG0088 | 218 | consensus GTPase Rab21, small G protein superfamil | 100.0 | |
| cd01861 | 161 | Rab6 Rab6 subfamily. Rab6 is involved in microtubu | 100.0 | |
| cd04130 | 173 | Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive | 100.0 | |
| cd01863 | 161 | Rab18 Rab18 subfamily. Mammalian Rab18 is implicat | 100.0 | |
| cd01892 | 169 | Miro2 Miro2 subfamily. Miro (mitochondrial Rho) pr | 100.0 | |
| PLN03118 | 211 | Rab family protein; Provisional | 100.0 | |
| PLN00223 | 181 | ADP-ribosylation factor; Provisional | 100.0 | |
| cd04103 | 158 | Centaurin_gamma Centaurin gamma. The centaurins (a | 100.0 | |
| cd04149 | 168 | Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor | 100.0 | |
| cd04135 | 174 | Tc10 TC10 subfamily. TC10 is a Rho family protein | 100.0 | |
| cd04143 | 247 | Rhes_like Rhes_like subfamily. This subfamily incl | 100.0 | |
| cd04158 | 169 | ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor | 100.0 | |
| cd04177 | 168 | RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the | 100.0 | |
| cd04123 | 162 | Rab21 Rab21 subfamily. The localization and functi | 100.0 | |
| smart00177 | 175 | ARF ARF-like small GTPases; ARF, ADP-ribosylation | 100.0 | |
| cd04146 | 165 | RERG_RasL11_like RERG/RasL11-like subfamily. RERG | 100.0 | |
| cd04148 | 221 | RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Ki | 100.0 | |
| KOG0081 | 219 | consensus GTPase Rab27, small G protein superfamil | 100.0 | |
| PTZ00133 | 182 | ADP-ribosylation factor; Provisional | 100.0 | |
| cd04150 | 159 | Arf1_5_like Arf1-Arf5-like subfamily. This subfami | 100.0 | |
| cd01870 | 175 | RhoA_like RhoA-like subfamily. The RhoA subfamily | 100.0 | |
| cd00154 | 159 | Rab Rab family. Rab GTPases form the largest famil | 100.0 | |
| cd04139 | 164 | RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) | 100.0 | |
| KOG0097 | 215 | consensus GTPase Rab14, small G protein superfamil | 100.0 | |
| cd04162 | 164 | Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 | 100.0 | |
| cd04152 | 183 | Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) i | 100.0 | |
| cd04154 | 173 | Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are | 100.0 | |
| cd04114 | 169 | Rab30 Rab30 subfamily. Rab30 appears to be associa | 100.0 | |
| cd04129 | 187 | Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that | 100.0 | |
| KOG0395 | 196 | consensus Ras-related GTPase [General function pre | 100.0 | |
| cd00157 | 171 | Rho Rho (Ras homology) family. Members of the Rho | 100.0 | |
| PF00025 | 175 | Arf: ADP-ribosylation factor family The prints ent | 100.0 | |
| KOG0393 | 198 | consensus Ras-related small GTPase, Rho type [Gene | 100.0 | |
| KOG0073 | 185 | consensus GTP-binding ADP-ribosylation factor-like | 100.0 | |
| cd04157 | 162 | Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a sub | 100.0 | |
| cd01893 | 166 | Miro1 Miro1 subfamily. Miro (mitochondrial Rho) pr | 100.0 | |
| cd00876 | 160 | Ras Ras family. The Ras family of the Ras superfam | 100.0 | |
| KOG0083 | 192 | consensus GTPase Rab26/Rab37, small G protein supe | 100.0 | |
| cd04137 | 180 | RheB Rheb (Ras Homolog Enriched in Brain) subfamil | 100.0 | |
| cd04153 | 174 | Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) a | 100.0 | |
| cd04147 | 198 | Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-v | 100.0 | |
| cd04161 | 167 | Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 ( | 100.0 | |
| cd00879 | 190 | Sar1 Sar1 subfamily. Sar1 is an essential componen | 100.0 | |
| cd04102 | 202 | RabL3 RabL3 (Rab-like3) subfamily. RabL3s are nove | 100.0 | |
| cd04160 | 167 | Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related prote | 99.98 | |
| cd04156 | 160 | ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor su | 99.97 | |
| cd04151 | 158 | Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes t | 99.97 | |
| smart00178 | 184 | SAR Sar1p-like members of the Ras-family of small | 99.97 | |
| cd00878 | 158 | Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-lik | 99.97 | |
| KOG0070 | 181 | consensus GTP-binding ADP-ribosylation factor Arf1 | 99.97 | |
| PLN00023 | 334 | GTP-binding protein; Provisional | 99.97 | |
| cd01890 | 179 | LepA LepA subfamily. LepA belongs to the GTPase fa | 99.97 | |
| PTZ00099 | 176 | rab6; Provisional | 99.97 | |
| cd01897 | 168 | NOG NOG1 is a nucleolar GTP-binding protein presen | 99.97 | |
| KOG0096 | 216 | consensus GTPase Ran/TC4/GSP1 (nuclear protein tra | 99.97 | |
| cd04159 | 159 | Arl10_like Arl10-like subfamily. Arl9/Arl10 was id | 99.97 | |
| cd04155 | 173 | Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf f | 99.96 | |
| KOG4252 | 246 | consensus GTP-binding protein [Signal transduction | 99.96 | |
| KOG0071 | 180 | consensus GTP-binding ADP-ribosylation factor Arf6 | 99.96 | |
| cd01898 | 170 | Obg Obg subfamily. The Obg nucleotide binding prot | 99.96 | |
| TIGR00231 | 161 | small_GTP small GTP-binding protein domain. This m | 99.96 | |
| TIGR02528 | 142 | EutP ethanolamine utilization protein, EutP. This | 99.95 | |
| cd04171 | 164 | SelB SelB subfamily. SelB is an elongation factor | 99.95 | |
| COG1100 | 219 | GTPase SAR1 and related small G proteins [General | 99.95 | |
| cd01891 | 194 | TypA_BipA TypA (tyrosine phosphorylated protein A) | 99.95 | |
| cd01878 | 204 | HflX HflX subfamily. A distinct conserved domain w | 99.95 | |
| KOG0075 | 186 | consensus GTP-binding ADP-ribosylation factor-like | 99.95 | |
| cd01887 | 168 | IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryo | 99.95 | |
| PRK15494 | 339 | era GTPase Era; Provisional | 99.94 | |
| PRK04213 | 201 | GTP-binding protein; Provisional | 99.94 | |
| cd01879 | 158 | FeoB Ferrous iron transport protein B (FeoB) subfa | 99.94 | |
| PRK12299 | 335 | obgE GTPase CgtA; Reviewed | 99.94 | |
| cd00882 | 157 | Ras_like_GTPase Ras-like GTPase superfamily. The R | 99.94 | |
| TIGR00436 | 270 | era GTP-binding protein Era. Era is an essential G | 99.94 | |
| TIGR01393 | 595 | lepA GTP-binding protein LepA. LepA (GUF1 in Sacca | 99.94 | |
| TIGR00450 | 442 | mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE | 99.93 | |
| PRK03003 | 472 | GTP-binding protein Der; Reviewed | 99.93 | |
| KOG0076 | 197 | consensus GTP-binding ADP-ribosylation factor-like | 99.93 | |
| KOG1673 | 205 | consensus Ras GTPases [General function prediction | 99.93 | |
| cd01894 | 157 | EngA1 EngA1 subfamily. This CD represents the firs | 99.93 | |
| cd04164 | 157 | trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein | 99.93 | |
| cd01889 | 192 | SelB_euk SelB subfamily. SelB is an elongation fac | 99.93 | |
| TIGR02729 | 329 | Obg_CgtA Obg family GTPase CgtA. This model descri | 99.93 | |
| cd00881 | 189 | GTP_translation_factor GTP translation factor fami | 99.93 | |
| cd01881 | 176 | Obg_like The Obg-like subfamily consists of five w | 99.93 | |
| PF08477 | 119 | Miro: Miro-like protein; InterPro: IPR013684 Mitoc | 99.93 | |
| PRK05291 | 449 | trmE tRNA modification GTPase TrmE; Reviewed | 99.93 | |
| TIGR03156 | 351 | GTP_HflX GTP-binding protein HflX. This protein fa | 99.93 | |
| PF02421 | 156 | FeoB_N: Ferrous iron transport protein B; InterPro | 99.92 | |
| PRK03003 | 472 | GTP-binding protein Der; Reviewed | 99.92 | |
| cd01888 | 203 | eIF2_gamma eIF2-gamma (gamma subunit of initiation | 99.92 | |
| TIGR00487 | 587 | IF-2 translation initiation factor IF-2. This mode | 99.92 | |
| KOG3883 | 198 | consensus Ras family small GTPase [Signal transduc | 99.92 | |
| KOG0074 | 185 | consensus GTP-binding ADP-ribosylation factor-like | 99.92 | |
| TIGR03594 | 429 | GTPase_EngA ribosome-associated GTPase EngA. EngA | 99.92 | |
| PRK12297 | 424 | obgE GTPase CgtA; Reviewed | 99.92 | |
| KOG0072 | 182 | consensus GTP-binding ADP-ribosylation factor-like | 99.92 | |
| PRK15467 | 158 | ethanolamine utilization protein EutP; Provisional | 99.92 | |
| PRK00454 | 196 | engB GTP-binding protein YsxC; Reviewed | 99.92 | |
| cd04163 | 168 | Era Era subfamily. Era (E. coli Ras-like protein) | 99.91 | |
| cd04105 | 203 | SR_beta Signal recognition particle receptor, beta | 99.91 | |
| cd01895 | 174 | EngA2 EngA2 subfamily. This CD represents the seco | 99.91 | |
| PF00009 | 188 | GTP_EFTU: Elongation factor Tu GTP binding domain; | 99.91 | |
| PRK05433 | 600 | GTP-binding protein LepA; Provisional | 99.91 | |
| TIGR03598 | 179 | GTPase_YsxC ribosome biogenesis GTP-binding protei | 99.91 | |
| TIGR03594 | 429 | GTPase_EngA ribosome-associated GTPase EngA. EngA | 99.91 | |
| TIGR00475 | 581 | selB selenocysteine-specific elongation factor Sel | 99.91 | |
| CHL00189 | 742 | infB translation initiation factor 2; Provisional | 99.91 | |
| PRK05306 | 787 | infB translation initiation factor IF-2; Validated | 99.91 | |
| PRK12296 | 500 | obgE GTPase CgtA; Reviewed | 99.91 | |
| PRK00089 | 292 | era GTPase Era; Reviewed | 99.9 | |
| PRK11058 | 426 | GTPase HflX; Provisional | 99.9 | |
| PRK00093 | 435 | GTP-binding protein Der; Reviewed | 99.9 | |
| PRK09554 | 772 | feoB ferrous iron transport protein B; Reviewed | 99.9 | |
| PRK00093 | 435 | GTP-binding protein Der; Reviewed | 99.9 | |
| COG2229 | 187 | Predicted GTPase [General function prediction only | 99.9 | |
| TIGR00437 | 591 | feoB ferrous iron transporter FeoB. FeoB (773 amin | 99.9 | |
| PRK09518 | 712 | bifunctional cytidylate kinase/GTPase Der; Reviewe | 99.9 | |
| PRK12317 | 425 | elongation factor 1-alpha; Reviewed | 99.89 | |
| PRK12298 | 390 | obgE GTPase CgtA; Reviewed | 99.89 | |
| PRK10218 | 607 | GTP-binding protein; Provisional | 99.89 | |
| cd00880 | 163 | Era_like Era (E. coli Ras-like protein)-like. This | 99.89 | |
| TIGR00483 | 426 | EF-1_alpha translation elongation factor EF-1 alph | 99.89 | |
| PRK09518 | 712 | bifunctional cytidylate kinase/GTPase Der; Reviewe | 99.89 | |
| COG1159 | 298 | Era GTPase [General function prediction only] | 99.88 | |
| KOG4423 | 229 | consensus GTP-binding protein-like, RAS superfamil | 99.88 | |
| TIGR01394 | 594 | TypA_BipA GTP-binding protein TypA/BipA. This bact | 99.88 | |
| COG0486 | 454 | ThdF Predicted GTPase [General function prediction | 99.88 | |
| cd01876 | 170 | YihA_EngB The YihA (EngB) subfamily. This subfamil | 99.87 | |
| cd04166 | 208 | CysN_ATPS CysN_ATPS subfamily. CysN, together with | 99.87 | |
| TIGR00491 | 590 | aIF-2 translation initiation factor aIF-2/yIF-2. T | 99.87 | |
| TIGR03680 | 406 | eif2g_arch translation initiation factor 2 subunit | 99.87 | |
| PRK04000 | 411 | translation initiation factor IF-2 subunit gamma; | 99.86 | |
| COG1160 | 444 | Predicted GTPases [General function prediction onl | 99.86 | |
| cd01884 | 195 | EF_Tu EF-Tu subfamily. This subfamily includes ort | 99.85 | |
| KOG0077 | 193 | consensus Vesicle coat complex COPII, GTPase subun | 99.85 | |
| PF10662 | 143 | PduV-EutP: Ethanolamine utilisation - propanediol | 99.85 | |
| cd01896 | 233 | DRG The developmentally regulated GTP-binding prot | 99.85 | |
| cd01883 | 219 | EF1_alpha Eukaryotic elongation factor 1 (EF1) alp | 99.85 | |
| COG1160 | 444 | Predicted GTPases [General function prediction onl | 99.85 | |
| PRK10512 | 614 | selenocysteinyl-tRNA-specific translation factor; | 99.84 | |
| cd04167 | 213 | Snu114p Snu114p subfamily. Snu114p is one of sever | 99.84 | |
| KOG1423 | 379 | consensus Ras-like GTPase ERA [Cell cycle control, | 99.84 | |
| cd04165 | 224 | GTPBP1_like GTPBP1-like. Mammalian GTP binding pro | 99.84 | |
| PRK12736 | 394 | elongation factor Tu; Reviewed | 99.84 | |
| PRK04004 | 586 | translation initiation factor IF-2; Validated | 99.83 | |
| PRK12735 | 396 | elongation factor Tu; Reviewed | 99.83 | |
| TIGR00485 | 394 | EF-Tu translation elongation factor TU. This align | 99.83 | |
| cd04169 | 267 | RF3 RF3 subfamily. Peptide chain release factor 3 | 99.83 | |
| cd04168 | 237 | TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), T | 99.82 | |
| KOG1707 | 625 | consensus Predicted Ras related/Rac-GTP binding pr | 99.82 | |
| COG0370 | 653 | FeoB Fe2+ transport system protein B [Inorganic io | 99.82 | |
| COG0218 | 200 | Predicted GTPase [General function prediction only | 99.81 | |
| PRK00741 | 526 | prfC peptide chain release factor 3; Provisional | 99.81 | |
| CHL00071 | 409 | tufA elongation factor Tu | 99.8 | |
| PF04670 | 232 | Gtr1_RagA: Gtr1/RagA G protein conserved region; I | 99.8 | |
| PLN03126 | 478 | Elongation factor Tu; Provisional | 99.8 | |
| TIGR02034 | 406 | CysN sulfate adenylyltransferase, large subunit. H | 99.79 | |
| COG1084 | 346 | Predicted GTPase [General function prediction only | 99.79 | |
| PLN00043 | 447 | elongation factor 1-alpha; Provisional | 99.79 | |
| cd04104 | 197 | p47_IIGP_like p47 (47-kDa) family. The p47 GTPase | 99.79 | |
| PRK05124 | 474 | cysN sulfate adenylyltransferase subunit 1; Provis | 99.79 | |
| PRK13351 | 687 | elongation factor G; Reviewed | 99.79 | |
| cd01850 | 276 | CDC_Septin CDC/Septin. Septins are a conserved fam | 99.78 | |
| PRK00049 | 396 | elongation factor Tu; Reviewed | 99.78 | |
| cd04170 | 268 | EF-G_bact Elongation factor G (EF-G) subfamily. Tr | 99.78 | |
| PTZ00141 | 446 | elongation factor 1- alpha; Provisional | 99.77 | |
| cd01886 | 270 | EF-G Elongation factor G (EF-G) subfamily. Translo | 99.77 | |
| KOG0462 | 650 | consensus Elongation factor-type GTP-binding prote | 99.77 | |
| PLN03127 | 447 | Elongation factor Tu; Provisional | 99.76 | |
| PRK05506 | 632 | bifunctional sulfate adenylyltransferase subunit 1 | 99.76 | |
| cd01885 | 222 | EF2 EF2 (for archaea and eukarya). Translocation r | 99.76 | |
| PF09439 | 181 | SRPRB: Signal recognition particle receptor beta s | 99.76 | |
| KOG1489 | 366 | consensus Predicted GTP-binding protein (ODN super | 99.75 | |
| cd01852 | 196 | AIG1 AIG1 (avrRpt2-induced gene 1). This represent | 99.74 | |
| COG0532 | 509 | InfB Translation initiation factor 2 (IF-2; GTPase | 99.74 | |
| cd01899 | 318 | Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg | 99.73 | |
| TIGR00503 | 527 | prfC peptide chain release factor 3. This translat | 99.73 | |
| COG0481 | 603 | LepA Membrane GTPase LepA [Cell envelope biogenesi | 99.73 | |
| PTZ00327 | 460 | eukaryotic translation initiation factor 2 gamma s | 99.73 | |
| PRK12739 | 691 | elongation factor G; Reviewed | 99.72 | |
| COG5256 | 428 | TEF1 Translation elongation factor EF-1alpha (GTPa | 99.72 | |
| PF01926 | 116 | MMR_HSR1: 50S ribosome-binding GTPase; InterPro: I | 99.71 | |
| KOG1191 | 531 | consensus Mitochondrial GTPase [Translation, ribos | 99.71 | |
| COG2262 | 411 | HflX GTPases [General function prediction only] | 99.71 | |
| TIGR00484 | 689 | EF-G translation elongation factor EF-G. After pep | 99.71 | |
| PRK00007 | 693 | elongation factor G; Reviewed | 99.69 | |
| KOG1145 | 683 | consensus Mitochondrial translation initiation fac | 99.69 | |
| COG1163 | 365 | DRG Predicted GTPase [General function prediction | 99.68 | |
| COG4917 | 148 | EutP Ethanolamine utilization protein [Amino acid | 99.68 | |
| COG3596 | 296 | Predicted GTPase [General function prediction only | 99.67 | |
| COG0536 | 369 | Obg Predicted GTPase [General function prediction | 99.67 | |
| PRK12740 | 668 | elongation factor G; Reviewed | 99.66 | |
| KOG0090 | 238 | consensus Signal recognition particle receptor, be | 99.66 | |
| KOG1490 | 620 | consensus GTP-binding protein CRFG/NOG1 (ODN super | 99.65 | |
| TIGR00490 | 720 | aEF-2 translation elongation factor aEF-2. This mo | 99.63 | |
| PRK09602 | 396 | translation-associated GTPase; Reviewed | 99.62 | |
| cd00066 | 317 | G-alpha G protein alpha subunit. The alpha subunit | 99.62 | |
| PRK13768 | 253 | GTPase; Provisional | 99.6 | |
| KOG3905 | 473 | consensus Dynein light intermediate chain [Cell mo | 99.6 | |
| PRK09866 | 741 | hypothetical protein; Provisional | 99.6 | |
| TIGR00157 | 245 | ribosome small subunit-dependent GTPase A. The Aqu | 99.6 | |
| KOG1532 | 366 | consensus GTPase XAB1, interacts with DNA repair p | 99.59 | |
| smart00275 | 342 | G_alpha G protein alpha subunit. Subunit of G prot | 99.59 | |
| PF05783 | 472 | DLIC: Dynein light intermediate chain (DLIC); Inte | 99.58 | |
| COG1217 | 603 | TypA Predicted membrane GTPase involved in stress | 99.57 | |
| COG2895 | 431 | CysN GTPases - Sulfate adenylate transferase subun | 99.56 | |
| TIGR00991 | 313 | 3a0901s02IAP34 GTP-binding protein (Chloroplast En | 99.56 | |
| PF04548 | 212 | AIG1: AIG1 family; InterPro: IPR006703 This entry | 99.56 | |
| TIGR00101 | 199 | ureG urease accessory protein UreG. This model rep | 99.56 | |
| PRK14845 | 1049 | translation initiation factor IF-2; Provisional | 99.55 | |
| smart00010 | 124 | small_GTPase Small GTPase of the Ras superfamily; | 99.55 | |
| cd01853 | 249 | Toc34_like Toc34-like (Translocon at the Outer-env | 99.55 | |
| KOG0458 | 603 | consensus Elongation factor 1 alpha [Translation, | 99.52 | |
| PLN00116 | 843 | translation elongation factor EF-2 subunit; Provis | 99.51 | |
| PTZ00416 | 836 | elongation factor 2; Provisional | 99.5 | |
| KOG0461 | 522 | consensus Selenocysteine-specific elongation facto | 99.5 | |
| KOG1707 | 625 | consensus Predicted Ras related/Rac-GTP binding pr | 99.49 | |
| COG4108 | 528 | PrfC Peptide chain release factor RF-3 [Translatio | 99.47 | |
| TIGR00073 | 207 | hypB hydrogenase accessory protein HypB. HypB is i | 99.47 | |
| PF03029 | 238 | ATP_bind_1: Conserved hypothetical ATP binding pro | 99.47 | |
| PRK09435 | 332 | membrane ATPase/protein kinase; Provisional | 99.47 | |
| PF05049 | 376 | IIGP: Interferon-inducible GTPase (IIGP); InterPro | 99.46 | |
| cd01882 | 225 | BMS1 Bms1. Bms1 is an essential, evolutionarily co | 99.45 | |
| PTZ00258 | 390 | GTP-binding protein; Provisional | 99.45 | |
| PRK07560 | 731 | elongation factor EF-2; Reviewed | 99.43 | |
| PF00735 | 281 | Septin: Septin; InterPro: IPR000038 Septins consti | 99.42 | |
| KOG0082 | 354 | consensus G-protein alpha subunit (small G protein | 99.42 | |
| COG0050 | 394 | TufB GTPases - translation elongation factors [Tra | 99.42 | |
| COG0480 | 697 | FusA Translation elongation factors (GTPases) [Tra | 99.4 | |
| COG5257 | 415 | GCD11 Translation initiation factor 2, gamma subun | 99.4 | |
| TIGR02836 | 492 | spore_IV_A stage IV sporulation protein A. A compa | 99.39 | |
| KOG1144 | 1064 | consensus Translation initiation factor 5B (eIF-5B | 99.38 | |
| KOG3886 | 295 | consensus GTP-binding protein [Signal transduction | 99.36 | |
| COG0378 | 202 | HypB Ni2+-binding GTPase involved in regulation of | 99.35 | |
| COG3276 | 447 | SelB Selenocysteine-specific translation elongatio | 99.35 | |
| PF00350 | 168 | Dynamin_N: Dynamin family; InterPro: IPR001401 Mem | 99.34 | |
| PRK09601 | 364 | GTP-binding protein YchF; Reviewed | 99.3 | |
| smart00053 | 240 | DYNc Dynamin, GTPase. Large GTPases that mediate v | 99.3 | |
| KOG0705 | 749 | consensus GTPase-activating protein Centaurin gamm | 99.29 | |
| TIGR00750 | 300 | lao LAO/AO transport system ATPase. Mutations have | 99.29 | |
| PRK12289 | 352 | GTPase RsgA; Reviewed | 99.26 | |
| cd01854 | 287 | YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtil | 99.25 | |
| cd01859 | 156 | MJ1464 MJ1464. This family represents archaeal GTP | 99.25 | |
| KOG0468 | 971 | consensus U5 snRNP-specific protein [Translation, | 99.21 | |
| PRK00098 | 298 | GTPase RsgA; Reviewed | 99.2 | |
| KOG3887 | 347 | consensus Predicted small GTPase involved in nucle | 99.19 | |
| PRK10463 | 290 | hydrogenase nickel incorporation protein HypB; Pro | 99.18 | |
| TIGR00993 | 763 | 3a0901s04IAP86 chloroplast protein import componen | 99.18 | |
| cd01855 | 190 | YqeH YqeH. YqeH is an essential GTP-binding protei | 99.18 | |
| KOG0460 | 449 | consensus Mitochondrial translation elongation fac | 99.17 | |
| PRK12288 | 347 | GTPase RsgA; Reviewed | 99.15 | |
| COG5019 | 373 | CDC3 Septin family protein [Cell division and chro | 99.13 | |
| COG0012 | 372 | Predicted GTPase, probable translation factor [Tra | 99.13 | |
| KOG2655 | 366 | consensus Septin family protein (P-loop GTPase) [C | 99.12 | |
| KOG0410 | 410 | consensus Predicted GTP binding protein [General f | 99.08 | |
| PF00503 | 389 | G-alpha: G-protein alpha subunit; InterPro: IPR001 | 99.07 | |
| PF03308 | 266 | ArgK: ArgK protein; InterPro: IPR005129 Bacterial | 99.05 | |
| KOG1547 | 336 | consensus Septin CDC10 and related P-loop GTPases | 99.03 | |
| COG5258 | 527 | GTPBP1 GTPase [General function prediction only] | 99.03 | |
| cd01857 | 141 | HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to t | 99.02 | |
| TIGR03597 | 360 | GTPase_YqeH ribosome biogenesis GTPase YqeH. This | 99.02 | |
| cd01900 | 274 | YchF YchF subfamily. YchF is a member of the Obg f | 99.0 | |
| KOG1143 | 591 | consensus Predicted translation elongation factor | 98.99 | |
| cd01858 | 157 | NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protei | 98.97 | |
| KOG0464 | 753 | consensus Elongation factor G [Translation, riboso | 98.97 | |
| COG1703 | 323 | ArgK Putative periplasmic protein kinase ArgK and | 98.96 | |
| KOG2486 | 320 | consensus Predicted GTPase [General function predi | 98.95 | |
| cd04178 | 172 | Nucleostemin_like Nucleostemin-like. Nucleostemin | 98.95 | |
| KOG0463 | 641 | consensus GTP-binding protein GP-1 [General functi | 98.95 | |
| KOG1486 | 364 | consensus GTP-binding protein DRG2 (ODN superfamil | 98.93 | |
| cd01856 | 171 | YlqF YlqF. Proteins of the YlqF family contain all | 98.92 | |
| cd01849 | 155 | YlqF_related_GTPase YlqF-related GTPases. These pr | 98.92 | |
| cd01856 | 171 | YlqF YlqF. Proteins of the YlqF family contain all | 98.91 | |
| cd01857 | 141 | HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to t | 98.9 | |
| cd01858 | 157 | NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protei | 98.88 | |
| cd01859 | 156 | MJ1464 MJ1464. This family represents archaeal GTP | 98.86 | |
| TIGR03596 | 276 | GTPase_YlqF ribosome biogenesis GTP-binding protei | 98.86 | |
| cd01855 | 190 | YqeH YqeH. YqeH is an essential GTP-binding protei | 98.84 | |
| PF09547 | 492 | Spore_IV_A: Stage IV sporulation protein A (spore_ | 98.84 | |
| COG1161 | 322 | Predicted GTPases [General function prediction onl | 98.83 | |
| KOG0099 | 379 | consensus G protein subunit Galphas, small G prote | 98.83 | |
| PRK09563 | 287 | rbgA GTPase YlqF; Reviewed | 98.81 | |
| TIGR03596 | 276 | GTPase_YlqF ribosome biogenesis GTP-binding protei | 98.81 | |
| PRK09563 | 287 | rbgA GTPase YlqF; Reviewed | 98.79 | |
| KOG1954 | 532 | consensus Endocytosis/signaling protein EHD1 [Sign | 98.78 | |
| COG1618 | 179 | Predicted nucleotide kinase [Nucleotide transport | 98.78 | |
| COG5192 | 1077 | BMS1 GTP-binding protein required for 40S ribosome | 98.75 | |
| KOG0459 | 501 | consensus Polypeptide release factor 3 [Translatio | 98.75 | |
| KOG0467 | 887 | consensus Translation elongation factor 2/ribosome | 98.72 | |
| cd01849 | 155 | YlqF_related_GTPase YlqF-related GTPases. These pr | 98.67 | |
| KOG1491 | 391 | consensus Predicted GTP-binding protein (ODN super | 98.67 | |
| KOG0085 | 359 | consensus G protein subunit Galphaq/Galphay, small | 98.67 | |
| PRK01889 | 356 | GTPase RsgA; Reviewed | 98.63 | |
| PRK10416 | 318 | signal recognition particle-docking protein FtsY; | 98.61 | |
| PRK13796 | 365 | GTPase YqeH; Provisional | 98.6 | |
| PF03193 | 161 | DUF258: Protein of unknown function, DUF258; Inter | 98.6 | |
| KOG4273 | 418 | consensus Uncharacterized conserved protein [Funct | 98.6 | |
| PRK12288 | 347 | GTPase RsgA; Reviewed | 98.57 | |
| KOG0466 | 466 | consensus Translation initiation factor 2, gamma s | 98.57 | |
| TIGR00092 | 368 | GTP-binding protein YchF. This predicted GTP-bindi | 98.57 | |
| PRK13796 | 365 | GTPase YqeH; Provisional | 98.55 | |
| PF06858 | 58 | NOG1: Nucleolar GTP-binding protein 1 (NOG1); Inte | 98.54 | |
| KOG0465 | 721 | consensus Mitochondrial elongation factor [Transla | 98.52 | |
| TIGR03348 | 1169 | VI_IcmF type VI secretion protein IcmF. Members of | 98.52 | |
| cd01851 | 224 | GBP Guanylate-binding protein (GBP), N-terminal do | 98.51 | |
| TIGR03597 | 360 | GTPase_YqeH ribosome biogenesis GTPase YqeH. This | 98.51 | |
| PRK12289 | 352 | GTPase RsgA; Reviewed | 98.51 | |
| TIGR00064 | 272 | ftsY signal recognition particle-docking protein F | 98.5 | |
| PRK14974 | 336 | cell division protein FtsY; Provisional | 98.48 | |
| KOG3859 | 406 | consensus Septins (P-loop GTPases) [Cell cycle con | 98.47 | |
| TIGR01425 | 429 | SRP54_euk signal recognition particle protein SRP5 | 98.44 | |
| TIGR00157 | 245 | ribosome small subunit-dependent GTPase A. The Aqu | 98.43 | |
| COG1162 | 301 | Predicted GTPases [General function prediction onl | 98.41 | |
| KOG0448 | 749 | consensus Mitofusin 1 GTPase, involved in mitochon | 98.4 | |
| COG1162 | 301 | Predicted GTPases [General function prediction onl | 98.4 | |
| cd01854 | 287 | YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtil | 98.32 | |
| cd03112 | 158 | CobW_like The function of this protein family is u | 98.31 | |
| KOG1487 | 358 | consensus GTP-binding protein DRG1 (ODN superfamil | 98.27 | |
| PRK00098 | 298 | GTPase RsgA; Reviewed | 98.25 | |
| PF03266 | 168 | NTPase_1: NTPase; InterPro: IPR004948 This entry r | 98.24 | |
| cd03115 | 173 | SRP The signal recognition particle (SRP) mediates | 98.23 | |
| PRK13695 | 174 | putative NTPase; Provisional | 98.21 | |
| KOG0447 | 980 | consensus Dynamin-like GTP binding protein [Genera | 98.19 | |
| PRK12727 | 559 | flagellar biosynthesis regulator FlhF; Provisional | 98.14 | |
| PRK00771 | 437 | signal recognition particle protein Srp54; Provisi | 98.14 | |
| TIGR00959 | 428 | ffh signal recognition particle protein. This mode | 98.13 | |
| PRK10867 | 433 | signal recognition particle protein; Provisional | 98.1 | |
| cd02038 | 139 | FleN-like FleN is a member of the Fer4_NifH superf | 98.09 | |
| PRK11889 | 436 | flhF flagellar biosynthesis regulator FlhF; Provis | 98.08 | |
| PRK14722 | 374 | flhF flagellar biosynthesis regulator FlhF; Provis | 98.05 | |
| COG0523 | 323 | Putative GTPases (G3E family) [General function pr | 98.0 | |
| PRK05703 | 424 | flhF flagellar biosynthesis regulator FlhF; Valida | 98.0 | |
| COG3640 | 255 | CooC CO dehydrogenase maturation factor [Cell divi | 97.99 | |
| KOG0469 | 842 | consensus Elongation factor 2 [Translation, riboso | 97.95 | |
| cd03114 | 148 | ArgK-like The function of this protein family is u | 97.95 | |
| KOG1424 | 562 | consensus Predicted GTP-binding protein MMR1 [Gene | 97.95 | |
| PRK11537 | 318 | putative GTP-binding protein YjiA; Provisional | 97.93 | |
| KOG2485 | 335 | consensus Conserved ATP/GTP binding protein [Gener | 97.92 | |
| PF13207 | 121 | AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6 | 97.85 | |
| PRK08118 | 167 | topology modulation protein; Reviewed | 97.84 | |
| COG3523 | 1188 | IcmF Type VI protein secretion system component Va | 97.82 | |
| COG0563 | 178 | Adk Adenylate kinase and related kinases [Nucleoti | 97.8 | |
| PRK07261 | 171 | topology modulation protein; Provisional | 97.79 | |
| PRK06731 | 270 | flhF flagellar biosynthesis regulator FlhF; Valida | 97.78 | |
| COG1419 | 407 | FlhF Flagellar GTP-binding protein [Cell motility | 97.77 | |
| PRK06995 | 484 | flhF flagellar biosynthesis regulator FlhF; Valida | 97.76 | |
| PRK14723 | 767 | flhF flagellar biosynthesis regulator FlhF; Provis | 97.76 | |
| PF13671 | 143 | AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1 | 97.73 | |
| PRK14738 | 206 | gmk guanylate kinase; Provisional | 97.73 | |
| COG0194 | 191 | Gmk Guanylate kinase [Nucleotide transport and met | 97.71 | |
| cd03111 | 106 | CpaE_like This protein family consists of proteins | 97.71 | |
| KOG1534 | 273 | consensus Putative transcription factor FET5 [Tran | 97.7 | |
| KOG2484 | 435 | consensus GTPase [General function prediction only | 97.69 | |
| PF13521 | 163 | AAA_28: AAA domain; PDB: 1LW7_A. | 97.68 | |
| PF13555 | 62 | AAA_29: P-loop containing region of AAA domain | 97.66 | |
| cd02042 | 104 | ParA ParA and ParB of Caulobacter crescentus belon | 97.64 | |
| PF11111 | 176 | CENP-M: Centromere protein M (CENP-M); InterPro: I | 97.64 | |
| COG1126 | 240 | GlnQ ABC-type polar amino acid transport system, A | 97.64 | |
| cd04178 | 172 | Nucleostemin_like Nucleostemin-like. Nucleostemin | 97.63 | |
| PLN02200 | 234 | adenylate kinase family protein | 97.62 | |
| cd02019 | 69 | NK Nucleoside/nucleotide kinase (NK) is a protein | 97.62 | |
| cd03110 | 179 | Fer4_NifH_child This protein family's function is | 97.62 | |
| PRK14737 | 186 | gmk guanylate kinase; Provisional | 97.61 | |
| cd02036 | 179 | MinD Bacterial cell division requires the formatio | 97.6 | |
| cd01983 | 99 | Fer4_NifH The Fer4_NifH superfamily contains a var | 97.57 | |
| cd00009 | 151 | AAA The AAA+ (ATPases Associated with a wide varie | 97.54 | |
| COG1136 | 226 | SalX ABC-type antimicrobial peptide transport syst | 97.54 | |
| PRK12726 | 407 | flagellar biosynthesis regulator FlhF; Provisional | 97.54 | |
| PRK05480 | 209 | uridine/cytidine kinase; Provisional | 97.53 | |
| TIGR02475 | 341 | CobW cobalamin biosynthesis protein CobW. A broade | 97.53 | |
| PRK06217 | 183 | hypothetical protein; Validated | 97.53 | |
| TIGR00235 | 207 | udk uridine kinase. Model contains a number of lon | 97.53 | |
| PF07015 | 231 | VirC1: VirC1 protein; InterPro: IPR009744 This fam | 97.52 | |
| PRK12724 | 432 | flagellar biosynthesis regulator FlhF; Provisional | 97.51 | |
| PRK14530 | 215 | adenylate kinase; Provisional | 97.49 | |
| PRK03839 | 180 | putative kinase; Provisional | 97.49 | |
| COG1116 | 248 | TauB ABC-type nitrate/sulfonate/bicarbonate transp | 97.49 | |
| PF00005 | 137 | ABC_tran: ABC transporter This structure is on hol | 97.47 | |
| PF13238 | 129 | AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB | 97.45 | |
| PF00004 | 132 | AAA: ATPase family associated with various cellula | 97.45 | |
| cd00071 | 137 | GMPK Guanosine monophosphate kinase (GMPK, EC 2.7. | 97.45 | |
| PF04665 | 241 | Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 | 97.45 | |
| PRK01889 | 356 | GTPase RsgA; Reviewed | 97.44 | |
| COG0552 | 340 | FtsY Signal recognition particle GTPase [Intracell | 97.44 | |
| smart00382 | 148 | AAA ATPases associated with a variety of cellular | 97.44 | |
| PRK10078 | 186 | ribose 1,5-bisphosphokinase; Provisional | 97.43 | |
| KOG2484 | 435 | consensus GTPase [General function prediction only | 97.43 | |
| TIGR02322 | 179 | phosphon_PhnN phosphonate metabolism protein/1,5-b | 97.42 | |
| PF03205 | 140 | MobB: Molybdopterin guanine dinucleotide synthesis | 97.42 | |
| KOG1424 | 562 | consensus Predicted GTP-binding protein MMR1 [Gene | 97.42 | |
| TIGR00150 | 133 | HI0065_YjeE ATPase, YjeE family. Members of this f | 97.41 | |
| PRK13949 | 169 | shikimate kinase; Provisional | 97.4 | |
| cd00820 | 107 | PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPC | 97.4 | |
| PRK08233 | 182 | hypothetical protein; Provisional | 97.39 | |
| COG1161 | 322 | Predicted GTPases [General function prediction onl | 97.37 | |
| COG4525 | 259 | TauB ABC-type taurine transport system, ATPase com | 97.37 | |
| PTZ00088 | 229 | adenylate kinase 1; Provisional | 97.37 | |
| cd03238 | 176 | ABC_UvrA The excision repair protein UvrA; Nucleot | 97.36 | |
| PF07728 | 139 | AAA_5: AAA domain (dynein-related subfamily); Inte | 97.36 | |
| PRK04195 | 482 | replication factor C large subunit; Provisional | 97.36 | |
| KOG3347 | 176 | consensus Predicted nucleotide kinase/nuclear prot | 97.35 | |
| PRK14532 | 188 | adenylate kinase; Provisional | 97.35 | |
| PRK00625 | 173 | shikimate kinase; Provisional | 97.34 | |
| cd02023 | 198 | UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1. | 97.33 | |
| COG1120 | 258 | FepC ABC-type cobalamin/Fe3+-siderophores transpor | 97.33 | |
| TIGR01360 | 188 | aden_kin_iso1 adenylate kinase, isozyme 1 subfamil | 97.33 | |
| TIGR03263 | 180 | guanyl_kin guanylate kinase. Members of this famil | 97.32 | |
| PRK14531 | 183 | adenylate kinase; Provisional | 97.3 | |
| PF03215 | 519 | Rad17: Rad17 cell cycle checkpoint protein | 97.29 | |
| PRK06547 | 172 | hypothetical protein; Provisional | 97.29 | |
| cd01130 | 186 | VirB11-like_ATPase Type IV secretory pathway compo | 97.29 | |
| cd01428 | 194 | ADK Adenylate kinase (ADK) catalyzes the reversibl | 97.29 | |
| COG3840 | 231 | ThiQ ABC-type thiamine transport system, ATPase co | 97.28 | |
| PRK10751 | 173 | molybdopterin-guanine dinucleotide biosynthesis pr | 97.28 | |
| cd01131 | 198 | PilT Pilus retraction ATPase PilT. PilT is a nucle | 97.28 | |
| COG3638 | 258 | ABC-type phosphate/phosphonate transport system, A | 97.26 | |
| PRK02496 | 184 | adk adenylate kinase; Provisional | 97.26 | |
| COG1936 | 180 | Predicted nucleotide kinase (related to CMP and AM | 97.25 | |
| TIGR01359 | 183 | UMP_CMP_kin_fam UMP-CMP kinase family. This subfam | 97.24 | |
| COG1117 | 253 | PstB ABC-type phosphate transport system, ATPase c | 97.23 | |
| PF13401 | 131 | AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S | 97.23 | |
| cd03222 | 177 | ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibi | 97.23 | |
| cd02025 | 220 | PanK Pantothenate kinase (PanK) catalyzes the phos | 97.23 | |
| COG3839 | 338 | MalK ABC-type sugar transport systems, ATPase comp | 97.23 | |
| PRK00300 | 205 | gmk guanylate kinase; Provisional | 97.23 |
| >KOG0084 consensus GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-43 Score=226.16 Aligned_cols=163 Identities=33% Similarity=0.606 Sum_probs=152.5
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccccccccccEEEE
Q 030504 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAII 91 (176)
Q Consensus 12 ~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~ 91 (176)
-.+||+++|.+|||||+|+.||..+.|.+.+..|+|+++......++++.+++++|||+|||+|+.+...||++++++|+
T Consensus 8 ylFKiiliGds~VGKtCL~~Rf~~~~f~e~~~sTIGVDf~~rt~e~~gk~iKlQIWDTAGQERFrtit~syYR~ahGii~ 87 (205)
T KOG0084|consen 8 YLFKIILIGDSGVGKTCLLLRFKDDTFTESYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIF 87 (205)
T ss_pred eEEEEEEECCCCcChhhhhhhhccCCcchhhcceeeeEEEEEEeeecceEEEEEeeeccccHHHhhhhHhhccCCCeEEE
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeCCChhhhhhHHHHHHHHhhhc-CCCCEEEEEeCCCCCcccc--CHHHHHHHHHcCCe-EEEeccCCCCChHHHHHHH
Q 030504 92 MFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNRQV--KAKQVTFHRKKNLQ-YYEISAKSNYNFEKPFLYL 167 (176)
Q Consensus 92 v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~liv~nK~Dl~~~~~--~~~~~~~~~~~~~~-~~~~S~~~~~~v~~~~~~l 167 (176)
|||+++.+||+.+..|+..+.+.. .+.|.++|+||+|+.+... ..+...++.+++.+ ++++||+++.||+++|..|
T Consensus 88 vyDiT~~~SF~~v~~Wi~Ei~~~~~~~v~~lLVGNK~Dl~~~~~v~~~~a~~fa~~~~~~~f~ETSAK~~~NVe~~F~~l 167 (205)
T KOG0084|consen 88 VYDITKQESFNNVKRWIQEIDRYASENVPKLLVGNKCDLTEKRVVSTEEAQEFADELGIPIFLETSAKDSTNVEDAFLTL 167 (205)
T ss_pred EEEcccHHHhhhHHHHHHHhhhhccCCCCeEEEeeccccHhheecCHHHHHHHHHhcCCcceeecccCCccCHHHHHHHH
Confidence 999999999999999999998876 5789999999999986443 34567999999999 9999999999999999999
Q ss_pred HHHHhcC
Q 030504 168 ARKLAGS 174 (176)
Q Consensus 168 ~~~i~~~ 174 (176)
+..+.++
T Consensus 168 a~~lk~~ 174 (205)
T KOG0084|consen 168 AKELKQR 174 (205)
T ss_pred HHHHHHh
Confidence 9988764
|
|
| >KOG0092 consensus GTPase Rab5/YPT51 and related small G protein superfamily GTPases [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-42 Score=219.80 Aligned_cols=165 Identities=33% Similarity=0.588 Sum_probs=152.3
Q ss_pred CCCeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccccccccccEE
Q 030504 10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCA 89 (176)
Q Consensus 10 ~~~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~ 89 (176)
....+||+++|..++|||||+.||..+.|.+...+|+|..+....+.+++..++|.+|||+|+|+|.++.+.||++++++
T Consensus 2 ~~~~~KvvLLG~~~VGKSSlV~Rfvk~~F~e~~e~TIGaaF~tktv~~~~~~ikfeIWDTAGQERy~slapMYyRgA~AA 81 (200)
T KOG0092|consen 2 ATREFKVVLLGDSGVGKSSLVLRFVKDQFHENIEPTIGAAFLTKTVTVDDNTIKFEIWDTAGQERYHSLAPMYYRGANAA 81 (200)
T ss_pred CcceEEEEEECCCCCCchhhhhhhhhCccccccccccccEEEEEEEEeCCcEEEEEEEEcCCcccccccccceecCCcEE
Confidence 34689999999999999999999999999998899999999999999999999999999999999999999999999999
Q ss_pred EEEEeCCChhhhhhHHHHHHHHhhhc-CCCCEEEEEeCCCCCc-cc-cCHHHHHHHHHcCCeEEEeccCCCCChHHHHHH
Q 030504 90 IIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKN-RQ-VKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLY 166 (176)
Q Consensus 90 i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~liv~nK~Dl~~-~~-~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~ 166 (176)
|+|||+++.+||+.+..|+..+.+.. ++.-+.++|||+||.. +. .-++...++...++.|||+||+++.|++++|..
T Consensus 82 ivvYDit~~~SF~~aK~WvkeL~~~~~~~~vialvGNK~DL~~~R~V~~~ea~~yAe~~gll~~ETSAKTg~Nv~~if~~ 161 (200)
T KOG0092|consen 82 IVVYDITDEESFEKAKNWVKELQRQASPNIVIALVGNKADLLERREVEFEEAQAYAESQGLLFFETSAKTGENVNEIFQA 161 (200)
T ss_pred EEEEecccHHHHHHHHHHHHHHHhhCCCCeEEEEecchhhhhhcccccHHHHHHHHHhcCCEEEEEecccccCHHHHHHH
Confidence 99999999999999999999998875 4566778999999987 33 345677999999999999999999999999999
Q ss_pred HHHHHhcC
Q 030504 167 LARKLAGS 174 (176)
Q Consensus 167 l~~~i~~~ 174 (176)
|++.+.++
T Consensus 162 Ia~~lp~~ 169 (200)
T KOG0092|consen 162 IAEKLPCS 169 (200)
T ss_pred HHHhccCc
Confidence 99998765
|
|
| >KOG0094 consensus GTPase Rab6/YPT6/Ryh1, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-42 Score=217.87 Aligned_cols=167 Identities=31% Similarity=0.561 Sum_probs=152.4
Q ss_pred CCCCCeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCcccccccccccccccc
Q 030504 8 TVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQ 87 (176)
Q Consensus 8 ~~~~~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~ 87 (176)
..+.+.+|++++|..+||||||++||..+.|+..|.+|+|+++...++.+.+..+.+++|||+|||+|+.+.+.|++++.
T Consensus 17 ~~~~k~~KlVflGdqsVGKTslItRf~yd~fd~~YqATIGiDFlskt~~l~d~~vrLQlWDTAGQERFrslipsY~Rds~ 96 (221)
T KOG0094|consen 17 GAPLKKYKLVFLGDQSVGKTSLITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSS 96 (221)
T ss_pred CccceEEEEEEEccCccchHHHHHHHHHhhhcccccceeeeEEEEEEEEEcCcEEEEEEEecccHHHHhhhhhhhccCCe
Confidence 44556799999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEeCCChhhhhhHHHHHHHHhhhcC--CCCEEEEEeCCCCCccc-c-CHHHHHHHHHcCCeEEEeccCCCCChHHH
Q 030504 88 CAIIMFDVTARLTYKNVPTWHRDLCRVCE--NIPIVLCGNKVDVKNRQ-V-KAKQVTFHRKKNLQYYEISAKSNYNFEKP 163 (176)
Q Consensus 88 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~p~liv~nK~Dl~~~~-~-~~~~~~~~~~~~~~~~~~S~~~~~~v~~~ 163 (176)
++|+|||+++..+|+...+|++.+..... +.-+++|+||.||.+.. . .++....+++++.-|+++||+.|.||.++
T Consensus 97 vaviVyDit~~~Sfe~t~kWi~dv~~e~gs~~viI~LVGnKtDL~dkrqvs~eEg~~kAkel~a~f~etsak~g~NVk~l 176 (221)
T KOG0094|consen 97 VAVIVYDITDRNSFENTSKWIEDVRRERGSDDVIIFLVGNKTDLSDKRQVSIEEGERKAKELNAEFIETSAKAGENVKQL 176 (221)
T ss_pred EEEEEEeccccchHHHHHHHHHHHHhccCCCceEEEEEcccccccchhhhhHHHHHHHHHHhCcEEEEecccCCCCHHHH
Confidence 99999999999999999999999987752 46689999999998643 3 34456889999999999999999999999
Q ss_pred HHHHHHHHhcC
Q 030504 164 FLYLARKLAGS 174 (176)
Q Consensus 164 ~~~l~~~i~~~ 174 (176)
|..++..+.+.
T Consensus 177 FrrIaa~l~~~ 187 (221)
T KOG0094|consen 177 FRRIAAALPGM 187 (221)
T ss_pred HHHHHHhccCc
Confidence 99999887764
|
|
| >PLN03071 GTP-binding nuclear protein Ran; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.7e-41 Score=226.75 Aligned_cols=174 Identities=99% Similarity=1.602 Sum_probs=156.8
Q ss_pred CCCCCCCCCCCCeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccc
Q 030504 1 MALPSQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRD 80 (176)
Q Consensus 1 ~~~~~~~~~~~~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~ 80 (176)
|+++...+.+...+||+++|.+|||||||+++++.+.+...+.++.|.++....+..++..+.+.+|||+|++.+..++.
T Consensus 1 ~~~~~~~~~~~~~~Ki~vvG~~gvGKTsli~~~~~~~f~~~~~~tig~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~ 80 (219)
T PLN03071 1 MALPNQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRD 80 (219)
T ss_pred CCCcccCCcCCCceEEEEECcCCCCHHHHHHHHhhCCCCCccCCccceeEEEEEEEECCeEEEEEEEECCCchhhhhhhH
Confidence 56777777778899999999999999999999999999989999999888887777777889999999999999999999
Q ss_pred cccccccEEEEEEeCCChhhhhhHHHHHHHHhhhcCCCCEEEEEeCCCCCccccCHHHHHHHHHcCCeEEEeccCCCCCh
Q 030504 81 GYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNF 160 (176)
Q Consensus 81 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v 160 (176)
.+++.++++|+|||++++.+++.+..|+..+.+..++.|+++|+||+|+..+....+...+++..++.|++|||++|.|+
T Consensus 81 ~~~~~~~~~ilvfD~~~~~s~~~i~~w~~~i~~~~~~~piilvgNK~Dl~~~~v~~~~~~~~~~~~~~~~e~SAk~~~~i 160 (219)
T PLN03071 81 GYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNF 160 (219)
T ss_pred HHcccccEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCcEEEEEEchhhhhccCCHHHHHHHHhcCCEEEEcCCCCCCCH
Confidence 99999999999999999999999999999998777889999999999997655544445777888999999999999999
Q ss_pred HHHHHHHHHHHhcC
Q 030504 161 EKPFLYLARKLAGS 174 (176)
Q Consensus 161 ~~~~~~l~~~i~~~ 174 (176)
+++|.||++.+.+.
T Consensus 161 ~~~f~~l~~~~~~~ 174 (219)
T PLN03071 161 EKPFLYLARKLAGD 174 (219)
T ss_pred HHHHHHHHHHHHcC
Confidence 99999999988754
|
|
| >KOG0080 consensus GTPase Rab18, small G protein superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-41 Score=209.03 Aligned_cols=168 Identities=29% Similarity=0.502 Sum_probs=154.1
Q ss_pred CCCCCeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCcccccccccccccccc
Q 030504 8 TVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQ 87 (176)
Q Consensus 8 ~~~~~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~ 87 (176)
+.....+||+++|++|+|||+|+.+|..+.+.+....|+|+++......+++..+++.+|||+|+|+|+.+.+.||+++.
T Consensus 6 s~~~~t~KiLlIGeSGVGKSSLllrFv~~~fd~~~~~tIGvDFkvk~m~vdg~~~KlaiWDTAGqErFRtLTpSyyRgaq 85 (209)
T KOG0080|consen 6 SGYDTTFKILLIGESGVGKSSLLLRFVSNTFDDLHPTTIGVDFKVKVMQVDGKRLKLAIWDTAGQERFRTLTPSYYRGAQ 85 (209)
T ss_pred cCcceeEEEEEEccCCccHHHHHHHHHhcccCccCCceeeeeEEEEEEEEcCceEEEEEEeccchHhhhccCHhHhccCc
Confidence 33456799999999999999999999999999998889999999999999999999999999999999999999999999
Q ss_pred EEEEEEeCCChhhhhhHHHHHHHHhhhc--CCCCEEEEEeCCCCCcc--ccCHHHHHHHHHcCCeEEEeccCCCCChHHH
Q 030504 88 CAIIMFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNR--QVKAKQVTFHRKKNLQYYEISAKSNYNFEKP 163 (176)
Q Consensus 88 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~liv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~ 163 (176)
++|+|||++.+++|.++..|...+.... +++-.++|+||.|.+.. ...++.+++++++++.|+||||++.+||+..
T Consensus 86 GiIlVYDVT~Rdtf~kLd~W~~Eld~Ystn~diikmlVgNKiDkes~R~V~reEG~kfAr~h~~LFiE~SAkt~~~V~~~ 165 (209)
T KOG0080|consen 86 GIILVYDVTSRDTFVKLDIWLKELDLYSTNPDIIKMLVGNKIDKESERVVDREEGLKFARKHRCLFIECSAKTRENVQCC 165 (209)
T ss_pred eeEEEEEccchhhHHhHHHHHHHHHhhcCCccHhHhhhcccccchhcccccHHHHHHHHHhhCcEEEEcchhhhccHHHH
Confidence 9999999999999999999999998776 45557899999998843 3345678999999999999999999999999
Q ss_pred HHHHHHHHhcCC
Q 030504 164 FLYLARKLAGST 175 (176)
Q Consensus 164 ~~~l~~~i~~~~ 175 (176)
|+.++.+|.+-|
T Consensus 166 FeelveKIi~tp 177 (209)
T KOG0080|consen 166 FEELVEKIIETP 177 (209)
T ss_pred HHHHHHHHhcCc
Confidence 999999999876
|
|
| >KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-40 Score=215.09 Aligned_cols=166 Identities=30% Similarity=0.581 Sum_probs=155.1
Q ss_pred CCCCeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccccccccccE
Q 030504 9 VDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQC 88 (176)
Q Consensus 9 ~~~~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~ 88 (176)
.....+||+++|.++||||+|+.+|..+.+...+..|+|+++...++..++..+.+++|||+|+++++.+..+|++++++
T Consensus 8 ~~d~~~kvlliGDs~vGKt~~l~rf~d~~f~~~~~sTiGIDFk~kti~l~g~~i~lQiWDtaGQerf~ti~~sYyrgA~g 87 (207)
T KOG0078|consen 8 DYDYLFKLLLIGDSGVGKTCLLLRFSDDSFNTSFISTIGIDFKIKTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMG 87 (207)
T ss_pred CcceEEEEEEECCCCCchhHhhhhhhhccCcCCccceEEEEEEEEEEEeCCeEEEEEEEEcccchhHHHHHHHHHhhcCe
Confidence 44568999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEeCCChhhhhhHHHHHHHHhhhcC-CCCEEEEEeCCCCCccc--cCHHHHHHHHHcCCeEEEeccCCCCChHHHHH
Q 030504 89 AIIMFDVTARLTYKNVPTWHRDLCRVCE-NIPIVLCGNKVDVKNRQ--VKAKQVTFHRKKNLQYYEISAKSNYNFEKPFL 165 (176)
Q Consensus 89 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~p~liv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~ 165 (176)
+++|||+++..+|+++..|+..+.+..+ +.|.++||||+|+..+. ..+...+++.++|+.|+|+||++|.||.++|.
T Consensus 88 i~LvyDitne~Sfeni~~W~~~I~e~a~~~v~~~LvGNK~D~~~~R~V~~e~ge~lA~e~G~~F~EtSAk~~~NI~eaF~ 167 (207)
T KOG0078|consen 88 ILLVYDITNEKSFENIRNWIKNIDEHASDDVVKILVGNKCDLEEKRQVSKERGEALAREYGIKFFETSAKTNFNIEEAFL 167 (207)
T ss_pred eEEEEEccchHHHHHHHHHHHHHHhhCCCCCcEEEeeccccccccccccHHHHHHHHHHhCCeEEEccccCCCCHHHHHH
Confidence 9999999999999999999999998864 89999999999998733 34456799999999999999999999999999
Q ss_pred HHHHHHhcC
Q 030504 166 YLARKLAGS 174 (176)
Q Consensus 166 ~l~~~i~~~ 174 (176)
.|++.+.++
T Consensus 168 ~La~~i~~k 176 (207)
T KOG0078|consen 168 SLARDILQK 176 (207)
T ss_pred HHHHHHHhh
Confidence 999998854
|
|
| >KOG0098 consensus GTPase Rab2, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-41 Score=212.95 Aligned_cols=163 Identities=33% Similarity=0.554 Sum_probs=153.2
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccccccccccEEEE
Q 030504 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAII 91 (176)
Q Consensus 12 ~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~ 91 (176)
..+|++++|..|||||+|+.+|...+|++.+..|+|+++....++++++.+++++|||+|+|.+++..+.||+.+.++++
T Consensus 5 ~~fKyIiiGd~gVGKSclllrf~~krF~~~hd~TiGvefg~r~~~id~k~IKlqiwDtaGqe~frsv~~syYr~a~GalL 84 (216)
T KOG0098|consen 5 YLFKYIIIGDTGVGKSCLLLRFTDKRFQPVHDLTIGVEFGARMVTIDGKQIKLQIWDTAGQESFRSVTRSYYRGAAGALL 84 (216)
T ss_pred ceEEEEEECCCCccHHHHHHHHhccCccccccceeeeeeceeEEEEcCceEEEEEEecCCcHHHHHHHHHHhccCcceEE
Confidence 56899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeCCChhhhhhHHHHHHHHhhhc-CCCCEEEEEeCCCCCcccc--CHHHHHHHHHcCCeEEEeccCCCCChHHHHHHHH
Q 030504 92 MFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNRQV--KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLA 168 (176)
Q Consensus 92 v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~liv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l~ 168 (176)
|||++++++|..+..|+..+.+.. +|.-+++++||+||..++. .++...+++++++.++++||++++|++|+|....
T Consensus 85 Vydit~r~sF~hL~~wL~D~rq~~~~NmvImLiGNKsDL~~rR~Vs~EEGeaFA~ehgLifmETSakt~~~VEEaF~nta 164 (216)
T KOG0098|consen 85 VYDITRRESFNHLTSWLEDARQHSNENMVIMLIGNKSDLEARREVSKEEGEAFAREHGLIFMETSAKTAENVEEAFINTA 164 (216)
T ss_pred EEEccchhhHHHHHHHHHHHHHhcCCCcEEEEEcchhhhhccccccHHHHHHHHHHcCceeehhhhhhhhhHHHHHHHHH
Confidence 999999999999999999998884 8999999999999986544 4456799999999999999999999999999999
Q ss_pred HHHhcC
Q 030504 169 RKLAGS 174 (176)
Q Consensus 169 ~~i~~~ 174 (176)
..|++.
T Consensus 165 ~~Iy~~ 170 (216)
T KOG0098|consen 165 KEIYRK 170 (216)
T ss_pred HHHHHH
Confidence 988754
|
|
| >cd04121 Rab40 Rab40 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-40 Score=219.31 Aligned_cols=163 Identities=22% Similarity=0.499 Sum_probs=147.4
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccccccccccEEEE
Q 030504 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAII 91 (176)
Q Consensus 12 ~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~ 91 (176)
..+||+++|..|||||||+.+|..+.+...+.++.+.++....+..++..+.+.+|||+|++++..++..+++.+|++++
T Consensus 5 ~~~KivviG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~l~~~~~~~ad~ill 84 (189)
T cd04121 5 YLLKFLLVGDSDVGKGEILASLQDGSTESPYGYNMGIDYKTTTILLDGRRVKLQLWDTSGQGRFCTIFRSYSRGAQGIIL 84 (189)
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCcceeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhcCCCEEEE
Confidence 45999999999999999999999999988888888888877777788888999999999999999999999999999999
Q ss_pred EEeCCChhhhhhHHHHHHHHhhhcCCCCEEEEEeCCCCCcc-c-cCHHHHHHHHHcCCeEEEeccCCCCChHHHHHHHHH
Q 030504 92 MFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNR-Q-VKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLAR 169 (176)
Q Consensus 92 v~d~~~~~s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~~~-~-~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l~~ 169 (176)
|||++++.+|+.+..|+..+....++.|+++|+||.|+... . ...+...+++..++.+++|||++|.||+++|.++++
T Consensus 85 VfD~t~~~Sf~~~~~w~~~i~~~~~~~piilVGNK~DL~~~~~v~~~~~~~~a~~~~~~~~e~SAk~g~~V~~~F~~l~~ 164 (189)
T cd04121 85 VYDITNRWSFDGIDRWIKEIDEHAPGVPKILVGNRLHLAFKRQVATEQAQAYAERNGMTFFEVSPLCNFNITESFTELAR 164 (189)
T ss_pred EEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECccchhccCCCHHHHHHHHHHcCCEEEEecCCCCCCHHHHHHHHHH
Confidence 99999999999999999999877789999999999999753 2 344567888999999999999999999999999999
Q ss_pred HHhcC
Q 030504 170 KLAGS 174 (176)
Q Consensus 170 ~i~~~ 174 (176)
.+..+
T Consensus 165 ~i~~~ 169 (189)
T cd04121 165 IVLMR 169 (189)
T ss_pred HHHHh
Confidence 87643
|
This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d |
| >cd04133 Rop_like Rop subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-39 Score=214.42 Aligned_cols=161 Identities=28% Similarity=0.465 Sum_probs=142.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccccccccccEEEEEE
Q 030504 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMF 93 (176)
Q Consensus 14 ~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 93 (176)
+||+++|.+++|||+|+.+|..+.+...+.+|.+..+ ......++..+++.+|||+|+++++.++..++++++++|+||
T Consensus 2 ~kivv~G~~~vGKTsli~~~~~~~f~~~~~~Ti~~~~-~~~~~~~~~~v~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilvy 80 (176)
T cd04133 2 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVSVDGNTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAF 80 (176)
T ss_pred eEEEEECCCCCcHHHHHHHHhcCCCCCCCCCcceeee-EEEEEECCEEEEEEEEECCCCccccccchhhcCCCcEEEEEE
Confidence 6999999999999999999999999988999998665 445667888899999999999999999999999999999999
Q ss_pred eCCChhhhhhH-HHHHHHHhhhcCCCCEEEEEeCCCCCcc------------ccCHHHHHHHHHcCC-eEEEeccCCCCC
Q 030504 94 DVTARLTYKNV-PTWHRDLCRVCENIPIVLCGNKVDVKNR------------QVKAKQVTFHRKKNL-QYYEISAKSNYN 159 (176)
Q Consensus 94 d~~~~~s~~~~-~~~~~~~~~~~~~~p~liv~nK~Dl~~~------------~~~~~~~~~~~~~~~-~~~~~S~~~~~~ 159 (176)
|++++.+|+.+ ..|+..+....++.|+++|+||+|+.++ ...++...+++..++ .|+||||++|.|
T Consensus 81 d~~~~~Sf~~~~~~w~~~i~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~E~SAk~~~n 160 (176)
T cd04133 81 SLISRASYENVLKKWVPELRHYAPNVPIVLVGTKLDLRDDKQYLADHPGASPITTAQGEELRKQIGAAAYIECSSKTQQN 160 (176)
T ss_pred EcCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeChhhccChhhhhhccCCCCCCHHHHHHHHHHcCCCEEEECCCCcccC
Confidence 99999999998 6899988776678999999999999653 223456688888887 699999999999
Q ss_pred hHHHHHHHHHHHhcCC
Q 030504 160 FEKPFLYLARKLAGST 175 (176)
Q Consensus 160 v~~~~~~l~~~i~~~~ 175 (176)
|+++|+.+++.+.+.|
T Consensus 161 V~~~F~~~~~~~~~~~ 176 (176)
T cd04133 161 VKAVFDAAIKVVLQPP 176 (176)
T ss_pred HHHHHHHHHHHHhcCC
Confidence 9999999999876543
|
The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example, |
| >cd04120 Rab12 Rab12 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-39 Score=217.05 Aligned_cols=161 Identities=29% Similarity=0.601 Sum_probs=142.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccccccccccEEEEEE
Q 030504 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMF 93 (176)
Q Consensus 14 ~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 93 (176)
+.|+++|..|||||||+++|..+.+...+.+|.|.++....+..++..+.+.+|||+|+++++.++..+++++|++|+||
T Consensus 1 ~~vvvlG~~gVGKTSli~r~~~~~f~~~~~~Ti~~~~~~~~i~~~~~~v~l~iwDtaGqe~~~~l~~~y~~~ad~iIlVf 80 (202)
T cd04120 1 LQVIIIGSRGVGKTSLMRRFTDDTFCEACKSGVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVY 80 (202)
T ss_pred CEEEEECcCCCCHHHHHHHHHhCCCCCcCCCcceeEEEEEEEEECCEEEEEEEEeCCCchhhHHHHHHHhcCCCEEEEEE
Confidence 36899999999999999999999999989999998888888888888999999999999999999999999999999999
Q ss_pred eCCChhhhhhHHHHHHHHhhhc-CCCCEEEEEeCCCCCc-cccC-HHHHHHHHHc-CCeEEEeccCCCCChHHHHHHHHH
Q 030504 94 DVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKN-RQVK-AKQVTFHRKK-NLQYYEISAKSNYNFEKPFLYLAR 169 (176)
Q Consensus 94 d~~~~~s~~~~~~~~~~~~~~~-~~~p~liv~nK~Dl~~-~~~~-~~~~~~~~~~-~~~~~~~S~~~~~~v~~~~~~l~~ 169 (176)
|++++.+|+.+..|+..+.+.. ++.|+++|+||+|+.. +... .+..+++++. ++.+++|||++|.|++++|.|+++
T Consensus 81 Dvtd~~Sf~~l~~w~~~i~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~a~~~~~~~~~etSAktg~gV~e~F~~l~~ 160 (202)
T cd04120 81 DITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCETDREISRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKLVD 160 (202)
T ss_pred ECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccccCHHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHH
Confidence 9999999999999998887654 5799999999999964 3332 3445677774 789999999999999999999999
Q ss_pred HHhcC
Q 030504 170 KLAGS 174 (176)
Q Consensus 170 ~i~~~ 174 (176)
.+.++
T Consensus 161 ~~~~~ 165 (202)
T cd04120 161 DILKK 165 (202)
T ss_pred HHHHh
Confidence 87643
|
Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic |
| >cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-39 Score=212.67 Aligned_cols=162 Identities=23% Similarity=0.397 Sum_probs=143.7
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccccccccccEEE
Q 030504 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (176)
Q Consensus 11 ~~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 90 (176)
...+||+++|.+++|||||+++|..+.+...+.||.+..+ ...+.+++..+.+.+|||+|++.+..+++.+++++|+++
T Consensus 3 ~~~~KivvvGd~~vGKTsli~~~~~~~f~~~~~pT~~~~~-~~~~~~~~~~~~l~iwDtaG~e~~~~~~~~~~~~ad~~i 81 (182)
T cd04172 3 NVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVL 81 (182)
T ss_pred cceEEEEEECCCCCCHHHHHHHHHhCCCCCccCCceeeee-EEEEEECCEEEEEEEEECCCchhhHhhhhhhcCCCCEEE
Confidence 4578999999999999999999999999999999998655 355677888999999999999999999999999999999
Q ss_pred EEEeCCChhhhhhH-HHHHHHHhhhcCCCCEEEEEeCCCCCcc--------------ccCHHHHHHHHHcCC-eEEEecc
Q 030504 91 IMFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGNKVDVKNR--------------QVKAKQVTFHRKKNL-QYYEISA 154 (176)
Q Consensus 91 ~v~d~~~~~s~~~~-~~~~~~~~~~~~~~p~liv~nK~Dl~~~--------------~~~~~~~~~~~~~~~-~~~~~S~ 154 (176)
+|||++++.+|+.+ ..|+..+.+..++.|+++|+||+|+.+. ....+..+++++.++ +|+||||
T Consensus 82 lvyDit~~~Sf~~~~~~w~~~i~~~~~~~piilVgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~E~SA 161 (182)
T cd04172 82 ICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDLTTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSA 161 (182)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEeEChhhhcChhhHHHHHhcCCCCCCHHHHHHHHHHcCCCEEEECCc
Confidence 99999999999997 7899998887788999999999998641 223457799999996 8999999
Q ss_pred CCCCC-hHHHHHHHHHHHhc
Q 030504 155 KSNYN-FEKPFLYLARKLAG 173 (176)
Q Consensus 155 ~~~~~-v~~~~~~l~~~i~~ 173 (176)
++|.| ++++|..+++.+..
T Consensus 162 k~~~n~v~~~F~~~~~~~~~ 181 (182)
T cd04172 162 LQSENSVRDIFHVATLACVN 181 (182)
T ss_pred CCCCCCHHHHHHHHHHHHhc
Confidence 99998 99999999987653
|
Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight |
| >cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-39 Score=209.15 Aligned_cols=163 Identities=86% Similarity=1.412 Sum_probs=147.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccccccccccEEEEEE
Q 030504 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMF 93 (176)
Q Consensus 14 ~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 93 (176)
+||+++|++|||||||+++++.+.+...+.++.+.+........+...+.+.+|||+|++.+...+..++..+|++|+||
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 80 (166)
T cd00877 1 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLDFHTNRGKIRFNVWDTAGQEKFGGLRDGYYIGGQCAIIMF 80 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCChhhccccHHHhcCCCEEEEEE
Confidence 58999999999999999999999988888999988887777777778899999999999999988999999999999999
Q ss_pred eCCChhhhhhHHHHHHHHhhhcCCCCEEEEEeCCCCCccccCHHHHHHHHHcCCeEEEeccCCCCChHHHHHHHHHHHhc
Q 030504 94 DVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAG 173 (176)
Q Consensus 94 d~~~~~s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l~~~i~~ 173 (176)
|++++.+++.+..|+..+.....+.|+++|+||+|+..+....+...+++..++.++++||++|.|++++|++|++.+.+
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~~~~ 160 (166)
T cd00877 81 DVTSRVTYKNVPNWHRDLVRVCGNIPIVLCGNKVDIKDRKVKAKQITFHRKKNLQYYEISAKSNYNFEKPFLWLARKLLG 160 (166)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCcEEEEEEchhcccccCCHHHHHHHHHcCCEEEEEeCCCCCChHHHHHHHHHHHHh
Confidence 99999999999999999988777899999999999986555555666777788999999999999999999999999987
Q ss_pred CCC
Q 030504 174 STD 176 (176)
Q Consensus 174 ~~~ 176 (176)
.|+
T Consensus 161 ~~~ 163 (166)
T cd00877 161 NPN 163 (166)
T ss_pred ccc
Confidence 663
|
Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is |
| >cd01875 RhoG RhoG subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-39 Score=213.39 Aligned_cols=162 Identities=31% Similarity=0.531 Sum_probs=140.8
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccccccccccEEEE
Q 030504 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAII 91 (176)
Q Consensus 12 ~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~ 91 (176)
..+||+++|..+||||||+.+|..+.+...+.||.+..+. .....++..+.+.+|||+|+++++.++..+++++|++|+
T Consensus 2 ~~~ki~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~G~e~~~~l~~~~~~~a~~~il 80 (191)
T cd01875 2 QSIKCVVVGDGAVGKTCLLICYTTNAFPKEYIPTVFDNYS-AQTAVDGRTVSLNLWDTAGQEEYDRLRTLSYPQTNVFII 80 (191)
T ss_pred CcEEEEEECCCCCCHHHHHHHHHhCCCCcCCCCceEeeeE-EEEEECCEEEEEEEEECCCchhhhhhhhhhccCCCEEEE
Confidence 4589999999999999999999999998889999986543 345677888999999999999999999999999999999
Q ss_pred EEeCCChhhhhhHH-HHHHHHhhhcCCCCEEEEEeCCCCCccc--------------cCHHHHHHHHHcC-CeEEEeccC
Q 030504 92 MFDVTARLTYKNVP-TWHRDLCRVCENIPIVLCGNKVDVKNRQ--------------VKAKQVTFHRKKN-LQYYEISAK 155 (176)
Q Consensus 92 v~d~~~~~s~~~~~-~~~~~~~~~~~~~p~liv~nK~Dl~~~~--------------~~~~~~~~~~~~~-~~~~~~S~~ 155 (176)
|||++++.+|+.+. .|...+....++.|+++|+||+||.+.. ...+...++++.+ +.+++|||+
T Consensus 81 vydit~~~Sf~~~~~~w~~~i~~~~~~~piilvgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~e~SAk 160 (191)
T cd01875 81 CFSIASPSSYENVRHKWHPEVCHHCPNVPILLVGTKKDLRNDADTLKKLKEQGQAPITPQQGGALAKQIHAVKYLECSAL 160 (191)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEeChhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCcEEEEeCCC
Confidence 99999999999996 5888777666789999999999996431 1234567888888 699999999
Q ss_pred CCCChHHHHHHHHHHHhcC
Q 030504 156 SNYNFEKPFLYLARKLAGS 174 (176)
Q Consensus 156 ~~~~v~~~~~~l~~~i~~~ 174 (176)
+|.|++++|.++++.+...
T Consensus 161 ~g~~v~e~f~~l~~~~~~~ 179 (191)
T cd01875 161 NQDGVKEVFAEAVRAVLNP 179 (191)
T ss_pred CCCCHHHHHHHHHHHHhcc
Confidence 9999999999999987653
|
RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin |
| >KOG0394 consensus Ras-related GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-39 Score=204.18 Aligned_cols=166 Identities=31% Similarity=0.631 Sum_probs=150.7
Q ss_pred CCCeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccccccccccEE
Q 030504 10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCA 89 (176)
Q Consensus 10 ~~~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~ 89 (176)
....+||+++|.+|+|||||+++|...+|...+..|+|.++..+.+.++++.+.+++|||+|+|+|+++..++|+++|.+
T Consensus 6 K~~lLKViiLGDsGVGKtSLmn~yv~~kF~~qykaTIgadFltKev~Vd~~~vtlQiWDTAGQERFqsLg~aFYRgaDcC 85 (210)
T KOG0394|consen 6 KRTLLKVIILGDSGVGKTSLMNQYVNKKFSQQYKATIGADFLTKEVQVDDRSVTLQIWDTAGQERFQSLGVAFYRGADCC 85 (210)
T ss_pred cccceEEEEeCCCCccHHHHHHHHHHHHHHHHhccccchhheeeEEEEcCeEEEEEEEecccHHHhhhcccceecCCceE
Confidence 34679999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCCChhhhhhHHHHHHHHhhhc-----CCCCEEEEEeCCCCCc---ccc-CHHHHHHHHHcC-CeEEEeccCCCCC
Q 030504 90 IIMFDVTARLTYKNVPTWHRDLCRVC-----ENIPIVLCGNKVDVKN---RQV-KAKQVTFHRKKN-LQYYEISAKSNYN 159 (176)
Q Consensus 90 i~v~d~~~~~s~~~~~~~~~~~~~~~-----~~~p~liv~nK~Dl~~---~~~-~~~~~~~~~~~~-~~~~~~S~~~~~~ 159 (176)
++|||++++.+|+.+..|...+.... ...|++++|||.|+.. +.+ ...++.+++..| ++|||+||+...|
T Consensus 86 vlvydv~~~~Sfe~L~~Wr~EFl~qa~~~~Pe~FPFVilGNKiD~~~~~~r~VS~~~Aq~WC~s~gnipyfEtSAK~~~N 165 (210)
T KOG0394|consen 86 VLVYDVNNPKSFENLENWRKEFLIQASPQDPETFPFVILGNKIDVDGGKSRQVSEKKAQTWCKSKGNIPYFETSAKEATN 165 (210)
T ss_pred EEEeecCChhhhccHHHHHHHHHHhcCCCCCCcccEEEEcccccCCCCccceeeHHHHHHHHHhcCCceeEEeccccccc
Confidence 99999999999999999999887653 3679999999999975 333 345778888875 8999999999999
Q ss_pred hHHHHHHHHHHHhcCC
Q 030504 160 FEKPFLYLARKLAGST 175 (176)
Q Consensus 160 v~~~~~~l~~~i~~~~ 175 (176)
|.++|..+++.+.+..
T Consensus 166 V~~AFe~ia~~aL~~E 181 (210)
T KOG0394|consen 166 VDEAFEEIARRALANE 181 (210)
T ss_pred HHHHHHHHHHHHHhcc
Confidence 9999999999877654
|
|
| >cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-38 Score=215.99 Aligned_cols=167 Identities=20% Similarity=0.321 Sum_probs=146.0
Q ss_pred CCCCCCeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccccccccc
Q 030504 7 QTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHG 86 (176)
Q Consensus 7 ~~~~~~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~ 86 (176)
+......+||+++|.++||||+|+++|..+.+...+.||.+..+. ..+.+++..+.+.+|||+|++.+..++..+++++
T Consensus 7 ~~~~~~~~KIvvvGd~~VGKTsLi~r~~~~~F~~~y~pTi~~~~~-~~i~~~~~~v~l~iwDTaG~e~~~~~~~~~~~~a 85 (232)
T cd04174 7 PQPLVMRCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYT-AGLETEEQRVELSLWDTSGSPYYDNVRPLCYSDS 85 (232)
T ss_pred CcCceeeEEEEEECCCCCcHHHHHHHHhcCCCCCCcCCceeeeeE-EEEEECCEEEEEEEEeCCCchhhHHHHHHHcCCC
Confidence 344567899999999999999999999999999999999986654 4567788899999999999999999999999999
Q ss_pred cEEEEEEeCCChhhhhhH-HHHHHHHhhhcCCCCEEEEEeCCCCCc-------------c-ccCHHHHHHHHHcCC-eEE
Q 030504 87 QCAIIMFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGNKVDVKN-------------R-QVKAKQVTFHRKKNL-QYY 150 (176)
Q Consensus 87 ~~~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~p~liv~nK~Dl~~-------------~-~~~~~~~~~~~~~~~-~~~ 150 (176)
|++++|||++++.+|+.+ ..|+..+....++.|+++|+||+|+.. + ....+...++++.++ .|+
T Consensus 86 d~vIlVyDit~~~Sf~~~~~~w~~~i~~~~~~~piilVgNK~DL~~~~~~~~~l~~~~~~~Vs~~e~~~~a~~~~~~~~~ 165 (232)
T cd04174 86 DAVLLCFDISRPETVDSALKKWKAEIMDYCPSTRILLIGCKTDLRTDLSTLMELSNQKQAPISYEQGCALAKQLGAEVYL 165 (232)
T ss_pred cEEEEEEECCChHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccccccchhhhhccccCCcCCHHHHHHHHHHcCCCEEE
Confidence 999999999999999985 789998887777899999999999863 1 223457799999998 699
Q ss_pred EeccCCCC-ChHHHHHHHHHHHhcC
Q 030504 151 EISAKSNY-NFEKPFLYLARKLAGS 174 (176)
Q Consensus 151 ~~S~~~~~-~v~~~~~~l~~~i~~~ 174 (176)
+|||++|. |++++|..++..+.++
T Consensus 166 EtSAktg~~~V~e~F~~~~~~~~~~ 190 (232)
T cd04174 166 ECSAFTSEKSIHSIFRSASLLCLNK 190 (232)
T ss_pred EccCCcCCcCHHHHHHHHHHHHHHh
Confidence 99999998 8999999999987654
|
Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. |
| >cd04131 Rnd Rnd subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-38 Score=208.96 Aligned_cols=159 Identities=23% Similarity=0.388 Sum_probs=140.6
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccccccccccEEEEE
Q 030504 13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIM 92 (176)
Q Consensus 13 ~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 92 (176)
.+||+++|.+|||||||+++|..+.+...+.||.+..+. ..+.+++..+.+.+|||+|++.+..+.+.+++++|++++|
T Consensus 1 ~~Kiv~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~-~~~~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~~ilv 79 (178)
T cd04131 1 RCKIVVVGDVQCGKTALLQVFAKDCYPETYVPTVFENYT-ASFEIDEQRIELSLWDTSGSPYYDNVRPLCYPDSDAVLIC 79 (178)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCcCCCCcCCceEEEEE-EEEEECCEEEEEEEEECCCchhhhhcchhhcCCCCEEEEE
Confidence 379999999999999999999999999889999876653 4567788899999999999999999999999999999999
Q ss_pred EeCCChhhhhhH-HHHHHHHhhhcCCCCEEEEEeCCCCCcc--------------ccCHHHHHHHHHcCC-eEEEeccCC
Q 030504 93 FDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGNKVDVKNR--------------QVKAKQVTFHRKKNL-QYYEISAKS 156 (176)
Q Consensus 93 ~d~~~~~s~~~~-~~~~~~~~~~~~~~p~liv~nK~Dl~~~--------------~~~~~~~~~~~~~~~-~~~~~S~~~ 156 (176)
||++++.+|+.+ ..|+..+.+..++.|+++|+||+||.+. ...++..+++++.++ .|+||||++
T Consensus 80 fdit~~~Sf~~~~~~w~~~i~~~~~~~~iilVgnK~DL~~~~~~~~~~~~~~~~~v~~~e~~~~a~~~~~~~~~E~SA~~ 159 (178)
T cd04131 80 FDISRPETLDSVLKKWRGEIQEFCPNTKVLLVGCKTDLRTDLSTLMELSHQRQAPVSYEQGCAIAKQLGAEIYLECSAFT 159 (178)
T ss_pred EECCChhhHHHHHHHHHHHHHHHCCCCCEEEEEEChhhhcChhHHHHHHhcCCCCCCHHHHHHHHHHhCCCEEEECccCc
Confidence 999999999996 7899988887789999999999999541 223457789999997 899999999
Q ss_pred CCC-hHHHHHHHHHHHh
Q 030504 157 NYN-FEKPFLYLARKLA 172 (176)
Q Consensus 157 ~~~-v~~~~~~l~~~i~ 172 (176)
|+| ++++|..+++.+.
T Consensus 160 ~~~~v~~~F~~~~~~~~ 176 (178)
T cd04131 160 SEKSVRDIFHVATMACL 176 (178)
T ss_pred CCcCHHHHHHHHHHHHh
Confidence 995 9999999998655
|
The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. |
| >cd04122 Rab14 Rab14 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-38 Score=205.53 Aligned_cols=162 Identities=33% Similarity=0.546 Sum_probs=144.3
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccccccccccEEEEE
Q 030504 13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIM 92 (176)
Q Consensus 13 ~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 92 (176)
.+||+++|++|||||||++++..+.+...+.++.+.++....+..++..+.+.+|||+|++++...+..++++++++++|
T Consensus 2 ~~ki~iiG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv 81 (166)
T cd04122 2 IFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVNGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMV 81 (166)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCCCCCcccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEEEE
Confidence 37999999999999999999999999888888888888777777888889999999999999999999999999999999
Q ss_pred EeCCChhhhhhHHHHHHHHhhhc-CCCCEEEEEeCCCCCccc--cCHHHHHHHHHcCCeEEEeccCCCCChHHHHHHHHH
Q 030504 93 FDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNRQ--VKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLAR 169 (176)
Q Consensus 93 ~d~~~~~s~~~~~~~~~~~~~~~-~~~p~liv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l~~ 169 (176)
||++++.+++.+..|+..+.... ++.|+++|+||+|+.... ...+..++++..+++++++||++|.|++++|.++++
T Consensus 82 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~iiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~e~f~~l~~ 161 (166)
T cd04122 82 YDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADLEAQRDVTYEEAKQFADENGLLFLECSAKTGENVEDAFLETAK 161 (166)
T ss_pred EECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccCcCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHH
Confidence 99999999999999998876553 578999999999997543 234566888888999999999999999999999999
Q ss_pred HHhcC
Q 030504 170 KLAGS 174 (176)
Q Consensus 170 ~i~~~ 174 (176)
.+.++
T Consensus 162 ~~~~~ 166 (166)
T cd04122 162 KIYQN 166 (166)
T ss_pred HHhhC
Confidence 88653
|
Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT |
| >cd04107 Rab32_Rab38 Rab38/Rab32 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-38 Score=211.05 Aligned_cols=161 Identities=35% Similarity=0.602 Sum_probs=142.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEec-CcEEEEEEEeCCCccccccccccccccccEEEEE
Q 030504 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTN-CGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIM 92 (176)
Q Consensus 14 ~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 92 (176)
+||+++|.+|||||||+++|..+.+...+.+|.+.++....+..+ +..+.+.+|||+|++.+..++..++++++++++|
T Consensus 1 ~KivivG~~~vGKTsli~~l~~~~~~~~~~~t~~~d~~~~~v~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~a~~~ilv 80 (201)
T cd04107 1 LKVLVIGDLGVGKTSIIKRYVHGIFSQHYKATIGVDFALKVIEWDPNTVVRLQLWDIAGQERFGGMTRVYYRGAVGAIIV 80 (201)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCCCEEEEEEEECCCchhhhhhHHHHhCCCCEEEEE
Confidence 589999999999999999999999988899999988777777776 7889999999999999999999999999999999
Q ss_pred EeCCChhhhhhHHHHHHHHhhhc-----CCCCEEEEEeCCCCCc--cccCHHHHHHHHHcC-CeEEEeccCCCCChHHHH
Q 030504 93 FDVTARLTYKNVPTWHRDLCRVC-----ENIPIVLCGNKVDVKN--RQVKAKQVTFHRKKN-LQYYEISAKSNYNFEKPF 164 (176)
Q Consensus 93 ~d~~~~~s~~~~~~~~~~~~~~~-----~~~p~liv~nK~Dl~~--~~~~~~~~~~~~~~~-~~~~~~S~~~~~~v~~~~ 164 (176)
||++++.+|+.+..|+..+.... .+.|+++|+||+|+.+ .....+..++++..+ +.++++||++|.|++++|
T Consensus 81 ~D~t~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sak~~~~v~e~f 160 (201)
T cd04107 81 FDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPCLLLANKCDLKKRLAKDGEQMDQFCKENGFIGWFETSAKEGINIEEAM 160 (201)
T ss_pred EECCCHHHHHHHHHHHHHHHHhhcccCCCCCcEEEEEECCCcccccccCHHHHHHHHHHcCCceEEEEeCCCCCCHHHHH
Confidence 99999999999999988776532 4789999999999973 334445668888888 699999999999999999
Q ss_pred HHHHHHHhcC
Q 030504 165 LYLARKLAGS 174 (176)
Q Consensus 165 ~~l~~~i~~~ 174 (176)
++|++.+.+.
T Consensus 161 ~~l~~~l~~~ 170 (201)
T cd04107 161 RFLVKNILAN 170 (201)
T ss_pred HHHHHHHHHh
Confidence 9999987654
|
Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. |
| >KOG0079 consensus GTP-binding protein H-ray, small G protein superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-39 Score=196.99 Aligned_cols=160 Identities=33% Similarity=0.604 Sum_probs=151.2
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccccccccccEEEEE
Q 030504 13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIM 92 (176)
Q Consensus 13 ~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 92 (176)
-++.+|+|.+|+|||+|+.+|..+.|...|..|+|.++...++.+++..+++++||++|+|+|+.+...++++.+++++|
T Consensus 8 LfkllIigDsgVGKssLl~rF~ddtFs~sYitTiGvDfkirTv~i~G~~VkLqIwDtAGqErFrtitstyyrgthgv~vV 87 (198)
T KOG0079|consen 8 LFKLLIIGDSGVGKSSLLLRFADDTFSGSYITTIGVDFKIRTVDINGDRVKLQIWDTAGQERFRTITSTYYRGTHGVIVV 87 (198)
T ss_pred HHHHHeecCCcccHHHHHHHHhhcccccceEEEeeeeEEEEEeecCCcEEEEEEeecccHHHHHHHHHHHccCCceEEEE
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeCCChhhhhhHHHHHHHHhhhcCCCCEEEEEeCCCCCcccc--CHHHHHHHHHcCCeEEEeccCCCCChHHHHHHHHHH
Q 030504 93 FDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQV--KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARK 170 (176)
Q Consensus 93 ~d~~~~~s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l~~~ 170 (176)
||+++.+||.+...|++.+...++..|-++|+||+|++.+.. .++++.++.+.++.+||+|++.+.|++.+|.-|.++
T Consensus 88 YDVTn~ESF~Nv~rWLeei~~ncdsv~~vLVGNK~d~~~RrvV~t~dAr~~A~~mgie~FETSaKe~~NvE~mF~cit~q 167 (198)
T KOG0079|consen 88 YDVTNGESFNNVKRWLEEIRNNCDSVPKVLVGNKNDDPERRVVDTEDARAFALQMGIELFETSAKENENVEAMFHCITKQ 167 (198)
T ss_pred EECcchhhhHhHHHHHHHHHhcCccccceecccCCCCccceeeehHHHHHHHHhcCchheehhhhhcccchHHHHHHHHH
Confidence 999999999999999999999999999999999999997654 446789999999999999999999999999998887
Q ss_pred Hh
Q 030504 171 LA 172 (176)
Q Consensus 171 i~ 172 (176)
..
T Consensus 168 vl 169 (198)
T KOG0079|consen 168 VL 169 (198)
T ss_pred HH
Confidence 54
|
|
| >smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-38 Score=209.93 Aligned_cols=156 Identities=87% Similarity=1.413 Sum_probs=143.2
Q ss_pred EcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccccccccccEEEEEEeCCCh
Q 030504 19 VGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTAR 98 (176)
Q Consensus 19 ~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~ 98 (176)
+|.++||||||+++|+.+.+...+.+|.|.++....+..++..+.+.+|||+|++++..++..++++++++|+|||++++
T Consensus 1 vG~~~vGKTsLi~r~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~ilV~D~t~~ 80 (200)
T smart00176 1 VGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTAR 80 (200)
T ss_pred CCCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhcCCCEEEEEEECCCh
Confidence 69999999999999999999888899999999888888888899999999999999999999999999999999999999
Q ss_pred hhhhhHHHHHHHHhhhcCCCCEEEEEeCCCCCccccCHHHHHHHHHcCCeEEEeccCCCCChHHHHHHHHHHHhcC
Q 030504 99 LTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGS 174 (176)
Q Consensus 99 ~s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l~~~i~~~ 174 (176)
.+++.+..|+..+.+..++.|+++|+||+|+..+....+...+++..++.|++|||++|.|++++|.||++.+.+.
T Consensus 81 ~S~~~i~~w~~~i~~~~~~~piilvgNK~Dl~~~~v~~~~~~~~~~~~~~~~e~SAk~~~~v~~~F~~l~~~i~~~ 156 (200)
T smart00176 81 VTYKNVPNWHRDLVRVCENIPIVLCGNKVDVKDRKVKAKSITFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGD 156 (200)
T ss_pred HHHHHHHHHHHHHHHhCCCCCEEEEEECcccccccCCHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHhc
Confidence 9999999999999887779999999999999766555555677888899999999999999999999999988664
|
Ran is involved in the active transport of proteins through nuclear pores. |
| >cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-38 Score=205.46 Aligned_cols=161 Identities=29% Similarity=0.487 Sum_probs=140.1
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccccccccccEEEEE
Q 030504 13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIM 92 (176)
Q Consensus 13 ~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 92 (176)
.+||+++|.+|||||||+++|..+.+...+.++.+..+ ......++..+.+.+|||+|++++..++..+++.+|++++|
T Consensus 2 ~~ki~vvG~~~vGKTsL~~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~~ilv 80 (172)
T cd04141 2 EYKIVMLGAGGVGKSAVTMQFISHSFPDYHDPTIEDAY-KQQARIDNEPALLDILDTAGQAEFTAMRDQYMRCGEGFIIC 80 (172)
T ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCCCcCCcccceE-EEEEEECCEEEEEEEEeCCCchhhHHHhHHHhhcCCEEEEE
Confidence 48999999999999999999999999888888887444 34466777888999999999999999999999999999999
Q ss_pred EeCCChhhhhhHHHHHHHHhhhc--CCCCEEEEEeCCCCCccc-c-CHHHHHHHHHcCCeEEEeccCCCCChHHHHHHHH
Q 030504 93 FDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNRQ-V-KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLA 168 (176)
Q Consensus 93 ~d~~~~~s~~~~~~~~~~~~~~~--~~~p~liv~nK~Dl~~~~-~-~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l~ 168 (176)
||++++.+|+.+..|+..+.+.. ++.|+++|+||+|+.... . ..+...+++..++++++|||++|.|++++|+|++
T Consensus 81 ~d~~~~~Sf~~~~~~~~~i~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sa~~~~~v~~~f~~l~ 160 (172)
T cd04141 81 YSVTDRHSFQEASEFKKLITRVRLTEDIPLVLVGNKVDLESQRQVTTEEGRNLAREFNCPFFETSAALRHYIDDAFHGLV 160 (172)
T ss_pred EECCchhHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhhhhcCccCHHHHHHHHHHhCCEEEEEecCCCCCHHHHHHHHH
Confidence 99999999999998887776642 579999999999996532 3 3356678888899999999999999999999999
Q ss_pred HHHhcC
Q 030504 169 RKLAGS 174 (176)
Q Consensus 169 ~~i~~~ 174 (176)
+.+.++
T Consensus 161 ~~~~~~ 166 (172)
T cd04141 161 REIRRK 166 (172)
T ss_pred HHHHHh
Confidence 987754
|
Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign |
| >KOG0087 consensus GTPase Rab11/YPT3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-38 Score=203.93 Aligned_cols=163 Identities=31% Similarity=0.520 Sum_probs=153.1
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccccccccccEEE
Q 030504 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (176)
Q Consensus 11 ~~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 90 (176)
.-.+||+++|.+++|||-|+.||..+.|..+..+|+|+++......++++.++.++|||+|+|+|++...+||+++.+++
T Consensus 12 dylFKiVliGDS~VGKsnLlsRftrnEF~~~SksTIGvef~t~t~~vd~k~vkaqIWDTAGQERyrAitSaYYrgAvGAl 91 (222)
T KOG0087|consen 12 DYLFKIVLIGDSAVGKSNLLSRFTRNEFSLESKSTIGVEFATRTVNVDGKTVKAQIWDTAGQERYRAITSAYYRGAVGAL 91 (222)
T ss_pred ceEEEEEEeCCCccchhHHHHHhcccccCcccccceeEEEEeeceeecCcEEEEeeecccchhhhccccchhhcccceeE
Confidence 34689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeCCChhhhhhHHHHHHHHhhhc-CCCCEEEEEeCCCCCc--cccCHHHHHHHHHcCCeEEEeccCCCCChHHHHHHH
Q 030504 91 IMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKN--RQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYL 167 (176)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~liv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l 167 (176)
+|||++...+|+.+..|+..+.... +++++++|+||+||.. ....++...++...++.++++||+++.||+++|..+
T Consensus 92 lVYDITr~~Tfenv~rWL~ELRdhad~nivimLvGNK~DL~~lraV~te~~k~~Ae~~~l~f~EtSAl~~tNVe~aF~~~ 171 (222)
T KOG0087|consen 92 LVYDITRRQTFENVERWLKELRDHADSNIVIMLVGNKSDLNHLRAVPTEDGKAFAEKEGLFFLETSALDATNVEKAFERV 171 (222)
T ss_pred EEEechhHHHHHHHHHHHHHHHhcCCCCeEEEEeecchhhhhccccchhhhHhHHHhcCceEEEecccccccHHHHHHHH
Confidence 9999999999999999999999886 7999999999999986 344566789999999999999999999999999999
Q ss_pred HHHHhc
Q 030504 168 ARKLAG 173 (176)
Q Consensus 168 ~~~i~~ 173 (176)
+..|..
T Consensus 172 l~~I~~ 177 (222)
T KOG0087|consen 172 LTEIYK 177 (222)
T ss_pred HHHHHH
Confidence 988764
|
|
| >cd04128 Spg1 Spg1p | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-37 Score=205.81 Aligned_cols=161 Identities=24% Similarity=0.394 Sum_probs=140.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccccccccccEEEEEE
Q 030504 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMF 93 (176)
Q Consensus 14 ~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 93 (176)
+||+++|.+|+|||||+++|..+.+...+.||.|.++....+..++..+.+.+||++|++++...+..+++++|++++||
T Consensus 1 ~Ki~vlG~~~vGKTsLi~~~~~~~f~~~~~~T~g~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~iilv~ 80 (182)
T cd04128 1 LKIGLLGDAQIGKTSLMVKYVEGEFDEDYIQTLGVNFMEKTISIRGTEITFSIWDLGGQREFINMLPLVCNDAVAILFMF 80 (182)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCchhHHHhhHHHCcCCCEEEEEE
Confidence 58999999999999999999999999889999998887777888888899999999999999999999999999999999
Q ss_pred eCCChhhhhhHHHHHHHHhhhcC-CCCEEEEEeCCCCCcc-------ccCHHHHHHHHHcCCeEEEeccCCCCChHHHHH
Q 030504 94 DVTARLTYKNVPTWHRDLCRVCE-NIPIVLCGNKVDVKNR-------QVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFL 165 (176)
Q Consensus 94 d~~~~~s~~~~~~~~~~~~~~~~-~~p~liv~nK~Dl~~~-------~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~ 165 (176)
|++++.+++.+..|+..+.+..+ ..| ++|+||+|+... ....+...+++..++++++|||++|.|++++|+
T Consensus 81 D~t~~~s~~~i~~~~~~~~~~~~~~~p-ilVgnK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~e~SAk~g~~v~~lf~ 159 (182)
T cd04128 81 DLTRKSTLNSIKEWYRQARGFNKTAIP-ILVGTKYDLFADLPPEEQEEITKQARKYAKAMKAPLIFCSTSHSINVQKIFK 159 (182)
T ss_pred ECcCHHHHHHHHHHHHHHHHhCCCCCE-EEEEEchhccccccchhhhhhHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHH
Confidence 99999999999999998876543 456 678999999531 112334567788889999999999999999999
Q ss_pred HHHHHHhcCC
Q 030504 166 YLARKLAGST 175 (176)
Q Consensus 166 ~l~~~i~~~~ 175 (176)
++++.+.+-|
T Consensus 160 ~l~~~l~~~~ 169 (182)
T cd04128 160 IVLAKAFDLP 169 (182)
T ss_pred HHHHHHHhcC
Confidence 9999887643
|
Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are |
| >KOG0093 consensus GTPase Rab3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-38 Score=191.98 Aligned_cols=161 Identities=27% Similarity=0.558 Sum_probs=150.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccccccccccEEEEEE
Q 030504 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMF 93 (176)
Q Consensus 14 ~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 93 (176)
+|++++|...+|||+|+.+++...|...+.+|.|+++..+++.-..+.+++++|||+|+|+++.+.-+++++++++|++|
T Consensus 22 fKlliiGnssvGKTSfl~ry~ddSFt~afvsTvGidFKvKTvyr~~kRiklQiwDTagqEryrtiTTayyRgamgfiLmy 101 (193)
T KOG0093|consen 22 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVYRSDKRIKLQIWDTAGQERYRTITTAYYRGAMGFILMY 101 (193)
T ss_pred eeEEEEccCCccchhhhHHhhccccccceeeeeeeeEEEeEeeecccEEEEEEEecccchhhhHHHHHHhhccceEEEEE
Confidence 59999999999999999999999999999999999999998888889999999999999999999999999999999999
Q ss_pred eCCChhhhhhHHHHHHHHhhhc-CCCCEEEEEeCCCCCccccC--HHHHHHHHHcCCeEEEeccCCCCChHHHHHHHHHH
Q 030504 94 DVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNRQVK--AKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARK 170 (176)
Q Consensus 94 d~~~~~s~~~~~~~~~~~~~~~-~~~p~liv~nK~Dl~~~~~~--~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l~~~ 170 (176)
|+++.++|..+..|..++...+ .+.|+++++||||+.+++.. +..+.++.++|..|||+||+.+.||+++|+.++..
T Consensus 102 DitNeeSf~svqdw~tqIktysw~naqvilvgnKCDmd~eRvis~e~g~~l~~~LGfefFEtSaK~NinVk~~Fe~lv~~ 181 (193)
T KOG0093|consen 102 DITNEESFNSVQDWITQIKTYSWDNAQVILVGNKCDMDSERVISHERGRQLADQLGFEFFETSAKENINVKQVFERLVDI 181 (193)
T ss_pred ecCCHHHHHHHHHHHHHheeeeccCceEEEEecccCCccceeeeHHHHHHHHHHhChHHhhhcccccccHHHHHHHHHHH
Confidence 9999999999999999998876 69999999999999976654 34679999999999999999999999999999988
Q ss_pred HhcC
Q 030504 171 LAGS 174 (176)
Q Consensus 171 i~~~ 174 (176)
|-++
T Consensus 182 Ic~k 185 (193)
T KOG0093|consen 182 ICDK 185 (193)
T ss_pred HHHH
Confidence 7654
|
|
| >cd04124 RabL2 RabL2 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-37 Score=199.60 Aligned_cols=160 Identities=30% Similarity=0.510 Sum_probs=141.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccccccccccEEEEEE
Q 030504 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMF 93 (176)
Q Consensus 14 ~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 93 (176)
+||+++|.+|||||||++++..+.+.+.+.++.+.+........++..+.+.+|||+|++.+...+..+++.+|++++||
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 80 (161)
T cd04124 1 VKIILLGDSAVGKSKLVERFLMDGYEPQQLSTYALTLYKHNAKFEGKTILVDFWDTAGQERFQTMHASYYHKAHACILVF 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhCCCCEEEEEE
Confidence 58999999999999999999999998888888877777777777888899999999999999999999999999999999
Q ss_pred eCCChhhhhhHHHHHHHHhhhcCCCCEEEEEeCCCCCccccCHHHHHHHHHcCCeEEEeccCCCCChHHHHHHHHHHHhc
Q 030504 94 DVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAG 173 (176)
Q Consensus 94 d~~~~~s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l~~~i~~ 173 (176)
|++++.+++.+..|+..+.+..++.|+++|+||+|+.... ..+..++++..+++++++||++|.|++++|+.+++.+.+
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~~~p~ivv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~~~~ 159 (161)
T cd04124 81 DVTRKITYKNLSKWYEELREYRPEIPCIVVANKIDLDPSV-TQKKFNFAEKHNLPLYYVSAADGTNVVKLFQDAIKLAVS 159 (161)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCcEEEEEECccCchhH-HHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHHh
Confidence 9999999999999999987776789999999999985432 234456677778999999999999999999999998775
Q ss_pred C
Q 030504 174 S 174 (176)
Q Consensus 174 ~ 174 (176)
.
T Consensus 160 ~ 160 (161)
T cd04124 160 Y 160 (161)
T ss_pred c
Confidence 4
|
RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b |
| >cd04117 Rab15 Rab15 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-37 Score=199.89 Aligned_cols=157 Identities=28% Similarity=0.542 Sum_probs=140.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccccccccccEEEEEE
Q 030504 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMF 93 (176)
Q Consensus 14 ~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 93 (176)
+||+++|++|+|||||+++++.+.+.+.+.++.+.++........+..+.+.+||++|++.+...+..+++.+|++++||
T Consensus 1 ~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~i~v~ 80 (161)
T cd04117 1 FRLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQERYQTITKQYYRRAQGIFLVY 80 (161)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCCcHhHHhhHHHHhcCCcEEEEEE
Confidence 58999999999999999999999998888999998877777777778899999999999999999999999999999999
Q ss_pred eCCChhhhhhHHHHHHHHhhhc-CCCCEEEEEeCCCCCccc--cCHHHHHHHHHcCCeEEEeccCCCCChHHHHHHHHHH
Q 030504 94 DVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNRQ--VKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARK 170 (176)
Q Consensus 94 d~~~~~s~~~~~~~~~~~~~~~-~~~p~liv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l~~~ 170 (176)
|++++.+|+.+..|+..+.... .+.|+++|+||.|+.... ...+...+++..++++++|||++|.|++++|.+|++.
T Consensus 81 d~~~~~sf~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~ 160 (161)
T cd04117 81 DISSERSYQHIMKWVSDVDEYAPEGVQKILIGNKADEEQKRQVGDEQGNKLAKEYGMDFFETSACTNSNIKESFTRLTEL 160 (161)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHhh
Confidence 9999999999999999887654 378999999999996533 2345667888888999999999999999999999874
|
Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to |
| >cd01874 Cdc42 Cdc42 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-37 Score=201.95 Aligned_cols=157 Identities=25% Similarity=0.433 Sum_probs=135.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccccccccccEEEEEE
Q 030504 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMF 93 (176)
Q Consensus 14 ~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 93 (176)
+||+++|.+|+|||||+++|..+.+...+.||.+..+. .....++..+.+.+|||+|++++...+..+++++|++|+||
T Consensus 2 ~ki~vvG~~~vGKTsl~~~~~~~~f~~~~~pt~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilv~ 80 (175)
T cd01874 2 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYA-VTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCF 80 (175)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeE-EEEEECCEEEEEEEEECCCccchhhhhhhhcccCCEEEEEE
Confidence 79999999999999999999999998889999986554 34566778899999999999999999999999999999999
Q ss_pred eCCChhhhhhHH-HHHHHHhhhcCCCCEEEEEeCCCCCccc-------------c-CHHHHHHHHHcC-CeEEEeccCCC
Q 030504 94 DVTARLTYKNVP-TWHRDLCRVCENIPIVLCGNKVDVKNRQ-------------V-KAKQVTFHRKKN-LQYYEISAKSN 157 (176)
Q Consensus 94 d~~~~~s~~~~~-~~~~~~~~~~~~~p~liv~nK~Dl~~~~-------------~-~~~~~~~~~~~~-~~~~~~S~~~~ 157 (176)
|++++.+|+.+. .|+..+....++.|+++|+||+|+.+.. + ..+...++++.+ +.+++|||++|
T Consensus 81 d~~~~~s~~~~~~~w~~~i~~~~~~~piilvgnK~Dl~~~~~~~~~l~~~~~~~v~~~~~~~~a~~~~~~~~~e~SA~tg 160 (175)
T cd01874 81 SVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETGEKLARDLKAVKYVECSALTQ 160 (175)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEECHhhhhChhhHHHhhhccCCCcCHHHHHHHHHHhCCcEEEEecCCCC
Confidence 999999999997 5888887666789999999999986431 1 223446777776 79999999999
Q ss_pred CChHHHHHHHHHHH
Q 030504 158 YNFEKPFLYLARKL 171 (176)
Q Consensus 158 ~~v~~~~~~l~~~i 171 (176)
.|++++|+.+++..
T Consensus 161 ~~v~~~f~~~~~~~ 174 (175)
T cd01874 161 KGLKNVFDEAILAA 174 (175)
T ss_pred CCHHHHHHHHHHHh
Confidence 99999999999854
|
Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi |
| >cd01865 Rab3 Rab3 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-37 Score=200.24 Aligned_cols=160 Identities=28% Similarity=0.579 Sum_probs=141.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccccccccccEEEEEE
Q 030504 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMF 93 (176)
Q Consensus 14 ~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 93 (176)
+||+++|++|||||||++++..+.+...+.++.|.++.......++..+.+.+|||+|++++...+..+++.++++++||
T Consensus 2 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~g~~~~~~~~~~~~~~~~~~l~v~ 81 (165)
T cd01865 2 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRNDKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMY 81 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHccCCcEEEEEE
Confidence 79999999999999999999999998888899887777666666777899999999999999999999999999999999
Q ss_pred eCCChhhhhhHHHHHHHHhhhc-CCCCEEEEEeCCCCCcccc--CHHHHHHHHHcCCeEEEeccCCCCChHHHHHHHHHH
Q 030504 94 DVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNRQV--KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARK 170 (176)
Q Consensus 94 d~~~~~s~~~~~~~~~~~~~~~-~~~p~liv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l~~~ 170 (176)
|++++.+++.+..|+..+.... ++.|+++|+||+|+..... ..+...+++..+++++++||+++.|++++|+++++.
T Consensus 82 d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~ 161 (165)
T cd01865 82 DITNEESFNAVQDWSTQIKTYSWDNAQVILVGNKCDMEDERVVSSERGRQLADQLGFEFFEASAKENINVKQVFERLVDI 161 (165)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCCCEEEEEECcccCcccccCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 9999999999999999887654 4789999999999975432 344567778888999999999999999999999988
Q ss_pred Hhc
Q 030504 171 LAG 173 (176)
Q Consensus 171 i~~ 173 (176)
+.+
T Consensus 162 ~~~ 164 (165)
T cd01865 162 ICD 164 (165)
T ss_pred HHh
Confidence 754
|
The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot |
| >cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-36 Score=199.32 Aligned_cols=161 Identities=32% Similarity=0.605 Sum_probs=143.0
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccccccccccEEEEE
Q 030504 13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIM 92 (176)
Q Consensus 13 ~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 92 (176)
.+||+++|++|||||||++++..+.+...+.++.+.++........+..+.+.+||+||++++...+..+++++|++++|
T Consensus 2 ~~ki~i~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v 81 (166)
T cd01869 2 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIV 81 (166)
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhCcCCEEEEE
Confidence 48999999999999999999999988888888888887777777777889999999999999999999999999999999
Q ss_pred EeCCChhhhhhHHHHHHHHhhhc-CCCCEEEEEeCCCCCccc-c-CHHHHHHHHHcCCeEEEeccCCCCChHHHHHHHHH
Q 030504 93 FDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNRQ-V-KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLAR 169 (176)
Q Consensus 93 ~d~~~~~s~~~~~~~~~~~~~~~-~~~p~liv~nK~Dl~~~~-~-~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l~~ 169 (176)
||++++.+++.+..|+..+.... ++.|+++|+||+|+.... . ..+...+++..+++++++||++|.|++++|.++++
T Consensus 82 ~d~~~~~s~~~l~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~ 161 (166)
T cd01869 82 YDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTDKRVVDYSEAQEFADELGIPFLETSAKNATNVEQAFMTMAR 161 (166)
T ss_pred EECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEEChhcccccCCCHHHHHHHHHHcCCeEEEEECCCCcCHHHHHHHHHH
Confidence 99999999999999999887665 578999999999986533 2 24456788888999999999999999999999999
Q ss_pred HHhc
Q 030504 170 KLAG 173 (176)
Q Consensus 170 ~i~~ 173 (176)
.+.+
T Consensus 162 ~~~~ 165 (166)
T cd01869 162 EIKK 165 (166)
T ss_pred HHHh
Confidence 8864
|
Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t |
| >cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-37 Score=199.84 Aligned_cols=162 Identities=30% Similarity=0.584 Sum_probs=144.0
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccccccccccEEEEE
Q 030504 13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIM 92 (176)
Q Consensus 13 ~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 92 (176)
.+||+++|++|+|||||++++..+.+...+.++.+.++....+..++..+.+.+||++|++.+...+..+++++|++++|
T Consensus 3 ~~ki~vvG~~~~GKSsl~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~ad~~i~v 82 (167)
T cd01867 3 LFKLLLIGDSGVGKSCLLLRFSEDSFNPSFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGIILV 82 (167)
T ss_pred ceEEEEECCCCCCHHHHHHHHhhCcCCcccccCccceEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhCCCCEEEEE
Confidence 58999999999999999999999999998999998888777777788889999999999999998899999999999999
Q ss_pred EeCCChhhhhhHHHHHHHHhhhc-CCCCEEEEEeCCCCCccc--cCHHHHHHHHHcCCeEEEeccCCCCChHHHHHHHHH
Q 030504 93 FDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNRQ--VKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLAR 169 (176)
Q Consensus 93 ~d~~~~~s~~~~~~~~~~~~~~~-~~~p~liv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l~~ 169 (176)
||++++.+++.+..|+..+.... .+.|+++|+||+|+.... ...+...++...+++++++||++|.|++++|.++++
T Consensus 83 ~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~ 162 (167)
T cd01867 83 YDITDEKSFENIRNWMRNIEEHASEDVERMLVGNKCDMEEKRVVSKEEGEALADEYGIKFLETSAKANINVEEAFFTLAK 162 (167)
T ss_pred EECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHH
Confidence 99999999999999998887654 578999999999997532 234456788888999999999999999999999999
Q ss_pred HHhcC
Q 030504 170 KLAGS 174 (176)
Q Consensus 170 ~i~~~ 174 (176)
++.++
T Consensus 163 ~~~~~ 167 (167)
T cd01867 163 DIKKK 167 (167)
T ss_pred HHHhC
Confidence 88653
|
Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi |
| >cd01871 Rac1_like Rac1-like subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-36 Score=200.06 Aligned_cols=157 Identities=27% Similarity=0.472 Sum_probs=135.1
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccccccccccEEEEE
Q 030504 13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIM 92 (176)
Q Consensus 13 ~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 92 (176)
++||+++|.+|||||||+.+++.+.+...+.++.+. ........++..+.+.+|||+|++.+...+..+++++|++|+|
T Consensus 1 ~~ki~iiG~~~vGKSsli~~~~~~~f~~~~~~t~~~-~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv 79 (174)
T cd01871 1 AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFD-NYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLIC 79 (174)
T ss_pred CeEEEEECCCCCCHHHHHHHHhcCCCCCcCCCccee-eeEEEEEECCEEEEEEEEECCCchhhhhhhhhhcCCCCEEEEE
Confidence 479999999999999999999999998888888864 3344556777889999999999999999999999999999999
Q ss_pred EeCCChhhhhhHH-HHHHHHhhhcCCCCEEEEEeCCCCCcc--------------ccCHHHHHHHHHcCC-eEEEeccCC
Q 030504 93 FDVTARLTYKNVP-TWHRDLCRVCENIPIVLCGNKVDVKNR--------------QVKAKQVTFHRKKNL-QYYEISAKS 156 (176)
Q Consensus 93 ~d~~~~~s~~~~~-~~~~~~~~~~~~~p~liv~nK~Dl~~~--------------~~~~~~~~~~~~~~~-~~~~~S~~~ 156 (176)
||++++.+|+.+. .|+..+....++.|+++|+||+|+... ....+..+++++.+. .+++|||++
T Consensus 80 ~d~~~~~sf~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~ 159 (174)
T cd01871 80 FSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALT 159 (174)
T ss_pred EECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEeeChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCcEEEEecccc
Confidence 9999999999996 688877766678999999999999642 123345678888884 999999999
Q ss_pred CCChHHHHHHHHHH
Q 030504 157 NYNFEKPFLYLARK 170 (176)
Q Consensus 157 ~~~v~~~~~~l~~~ 170 (176)
|.|++++|+.+++.
T Consensus 160 ~~~i~~~f~~l~~~ 173 (174)
T cd01871 160 QKGLKTVFDEAIRA 173 (174)
T ss_pred cCCHHHHHHHHHHh
Confidence 99999999999875
|
The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti |
| >cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-37 Score=206.37 Aligned_cols=161 Identities=24% Similarity=0.423 Sum_probs=139.5
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccccccccccEEEEE
Q 030504 13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIM 92 (176)
Q Consensus 13 ~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 92 (176)
.+||+++|.+|||||||+++|..+.+...+.||.+..+. ..+.+++..+.+.+|||+|++.+..++..+++++|++++|
T Consensus 1 ~~KIvvvGd~~vGKTsLi~~~~~~~f~~~y~pTi~~~~~-~~~~~~~~~v~L~iwDt~G~e~~~~l~~~~~~~~d~illv 79 (222)
T cd04173 1 RCKIVVVGDAECGKTALLQVFAKDAYPGSYVPTVFENYT-ASFEIDKRRIELNMWDTSGSSYYDNVRPLAYPDSDAVLIC 79 (222)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCccCCccccceE-EEEEECCEEEEEEEEeCCCcHHHHHHhHHhccCCCEEEEE
Confidence 379999999999999999999999999899999876554 4567788899999999999999999999999999999999
Q ss_pred EeCCChhhhhhHH-HHHHHHhhhcCCCCEEEEEeCCCCCcc--------------ccCHHHHHHHHHcCC-eEEEeccCC
Q 030504 93 FDVTARLTYKNVP-TWHRDLCRVCENIPIVLCGNKVDVKNR--------------QVKAKQVTFHRKKNL-QYYEISAKS 156 (176)
Q Consensus 93 ~d~~~~~s~~~~~-~~~~~~~~~~~~~p~liv~nK~Dl~~~--------------~~~~~~~~~~~~~~~-~~~~~S~~~ 156 (176)
||++++.+|+.+. .|...+....++.|+++|+||+|+... ...++...++++.++ .|+||||++
T Consensus 80 fdis~~~Sf~~i~~~w~~~~~~~~~~~piiLVgnK~DL~~~~~~~~~~~~~~~~pIs~e~g~~~ak~~~~~~y~E~SAk~ 159 (222)
T cd04173 80 FDISRPETLDSVLKKWQGETQEFCPNAKVVLVGCKLDMRTDLATLRELSKQRLIPVTHEQGTVLAKQVGAVSYVECSSRS 159 (222)
T ss_pred EECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEECcccccchhhhhhhhhccCCccCHHHHHHHHHHcCCCEEEEcCCCc
Confidence 9999999999995 677777666789999999999999642 122356688888885 899999999
Q ss_pred CCC-hHHHHHHHHHHHhcC
Q 030504 157 NYN-FEKPFLYLARKLAGS 174 (176)
Q Consensus 157 ~~~-v~~~~~~l~~~i~~~ 174 (176)
+.+ |+++|..++.....+
T Consensus 160 ~~~~V~~~F~~~~~~~~~~ 178 (222)
T cd04173 160 SERSVRDVFHVATVASLGR 178 (222)
T ss_pred CCcCHHHHHHHHHHHHHhc
Confidence 885 999999999977654
|
Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma |
| >cd04119 RJL RJL (RabJ-Like) subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-36 Score=199.18 Aligned_cols=160 Identities=26% Similarity=0.536 Sum_probs=141.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccccccccccEEEEEE
Q 030504 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMF 93 (176)
Q Consensus 14 ~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 93 (176)
+||+++|++|||||||++++..+++...+.++.+.++....+..++..+.+.+|||+|++.+...+..+++++|++|+||
T Consensus 1 ~ki~~vG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~ 80 (168)
T cd04119 1 IKVISMGNSGVGKSCIIKRYCEGRFVSKYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHPEYLEVRNEFYKDTQGVLLVY 80 (168)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCeEEEEEEEECCccHHHHHHHHHHhccCCEEEEEE
Confidence 58999999999999999999999998889999998888888888888999999999999999989999999999999999
Q ss_pred eCCChhhhhhHHHHHHHHhhhc------CCCCEEEEEeCCCCCc-cc-cCHHHHHHHHHcCCeEEEeccCCCCChHHHHH
Q 030504 94 DVTARLTYKNVPTWHRDLCRVC------ENIPIVLCGNKVDVKN-RQ-VKAKQVTFHRKKNLQYYEISAKSNYNFEKPFL 165 (176)
Q Consensus 94 d~~~~~s~~~~~~~~~~~~~~~------~~~p~liv~nK~Dl~~-~~-~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~ 165 (176)
|++++.+++.+..|+..+.... .+.|+++|+||+|+.. .. ...+...+++..+++++++||++|.|++++|+
T Consensus 81 D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 160 (168)
T cd04119 81 DVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKIDLTKHRAVSEDEGRLWAESKGFKYFETSACTGEGVNEMFQ 160 (168)
T ss_pred ECCCHHHHHhHHHHHHHHHHhccccccCCCceEEEEEEchhcccccccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHH
Confidence 9999999999999998887653 3689999999999973 22 23344567788889999999999999999999
Q ss_pred HHHHHHhc
Q 030504 166 YLARKLAG 173 (176)
Q Consensus 166 ~l~~~i~~ 173 (176)
+|++.+.+
T Consensus 161 ~l~~~l~~ 168 (168)
T cd04119 161 TLFSSIVD 168 (168)
T ss_pred HHHHHHhC
Confidence 99998753
|
RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. |
| >cd04127 Rab27A Rab27a subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-36 Score=201.29 Aligned_cols=163 Identities=31% Similarity=0.547 Sum_probs=142.3
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEec----------CcEEEEEEEeCCCcccccccccc
Q 030504 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTN----------CGKIRFYCWDTAGQEKFGGLRDG 81 (176)
Q Consensus 12 ~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~D~~g~~~~~~~~~~ 81 (176)
..+||+++|++|||||||++++..+.+...+.++.+.++........ +..+.+.+||++|++.+...+..
T Consensus 3 ~~~ki~ivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~ 82 (180)
T cd04127 3 YLIKFLALGDSGVGKTSFLYQYTDNKFNPKFITTVGIDFREKRVVYNSSGPGGTLGRGQRIHLQLWDTAGQERFRSLTTA 82 (180)
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceEEEEEEEEEcCccccccccCCCEEEEEEEeCCChHHHHHHHHH
Confidence 35899999999999999999999999998889999877776655443 45689999999999999999999
Q ss_pred ccccccEEEEEEeCCChhhhhhHHHHHHHHhhhc--CCCCEEEEEeCCCCCccc-c-CHHHHHHHHHcCCeEEEeccCCC
Q 030504 82 YYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNRQ-V-KAKQVTFHRKKNLQYYEISAKSN 157 (176)
Q Consensus 82 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~liv~nK~Dl~~~~-~-~~~~~~~~~~~~~~~~~~S~~~~ 157 (176)
+++++|++++|||++++.+++.+..|+..+.... ++.|+++|+||+|+.... . ..+...+++..+++++++||++|
T Consensus 83 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~~ 162 (180)
T cd04127 83 FFRDAMGFLLIFDLTNEQSFLNVRNWMSQLQTHAYCENPDIVLCGNKADLEDQRQVSEEQAKALADKYGIPYFETSAATG 162 (180)
T ss_pred HhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEeCccchhcCccCHHHHHHHHHHcCCeEEEEeCCCC
Confidence 9999999999999999999999999998887653 578999999999997532 2 34466888889999999999999
Q ss_pred CChHHHHHHHHHHHhcC
Q 030504 158 YNFEKPFLYLARKLAGS 174 (176)
Q Consensus 158 ~~v~~~~~~l~~~i~~~ 174 (176)
.|++++|++|++.+.++
T Consensus 163 ~~v~~l~~~l~~~~~~~ 179 (180)
T cd04127 163 TNVEKAVERLLDLVMKR 179 (180)
T ss_pred CCHHHHHHHHHHHHHhh
Confidence 99999999999988764
|
The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated |
| >cd04110 Rab35 Rab35 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-36 Score=202.90 Aligned_cols=162 Identities=32% Similarity=0.564 Sum_probs=144.4
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccccccccccEEEE
Q 030504 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAII 91 (176)
Q Consensus 12 ~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~ 91 (176)
..+||+++|++|||||||+++|..+.+...+.+|.+.++....+..++..+.+.+||+||++.+...+..++++++++++
T Consensus 5 ~~~kivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~a~~iil 84 (199)
T cd04110 5 HLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGERVKLQIWDTAGQERFRTITSTYYRGTHGVIV 84 (199)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhcCCCCCCcCccccceeEEEEEEECCEEEEEEEEeCCCchhHHHHHHHHhCCCcEEEE
Confidence 46999999999999999999999998888888999888777777777788899999999999999999999999999999
Q ss_pred EEeCCChhhhhhHHHHHHHHhhhcCCCCEEEEEeCCCCCcccc--CHHHHHHHHHcCCeEEEeccCCCCChHHHHHHHHH
Q 030504 92 MFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQV--KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLAR 169 (176)
Q Consensus 92 v~d~~~~~s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l~~ 169 (176)
|||++++.+++.+..|+..+....+..|+++|+||+|+..... ..+...+++..++.++++|+++|.|++++|+++++
T Consensus 85 v~D~~~~~s~~~~~~~~~~i~~~~~~~piivVgNK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~gi~~lf~~l~~ 164 (199)
T cd04110 85 VYDVTNGESFVNVKRWLQEIEQNCDDVCKVLVGNKNDDPERKVVETEDAYKFAGQMGISLFETSAKENINVEEMFNCITE 164 (199)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEECCCCcCHHHHHHHHHH
Confidence 9999999999999999998877777899999999999976432 24456778888899999999999999999999999
Q ss_pred HHhc
Q 030504 170 KLAG 173 (176)
Q Consensus 170 ~i~~ 173 (176)
.+..
T Consensus 165 ~~~~ 168 (199)
T cd04110 165 LVLR 168 (199)
T ss_pred HHHH
Confidence 8764
|
Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is |
| >KOG0086 consensus GTPase Rab4, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-37 Score=191.06 Aligned_cols=162 Identities=30% Similarity=0.564 Sum_probs=149.1
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccccccccccEEEEE
Q 030504 13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIM 92 (176)
Q Consensus 13 ~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 92 (176)
-+|++++|+.|+|||+|+++|..+++.....+|+|+++....+.+..+.+++++|||+|+|+|++..+.||+++.++++|
T Consensus 9 LfKfl~iG~aGtGKSCLLh~Fie~kfkDdssHTiGveFgSrIinVGgK~vKLQIWDTAGQErFRSVtRsYYRGAAGAlLV 88 (214)
T KOG0086|consen 9 LFKFLVIGSAGTGKSCLLHQFIENKFKDDSSHTIGVEFGSRIVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGALLV 88 (214)
T ss_pred hheeEEeccCCCChhHHHHHHHHhhhcccccceeeeeecceeeeecCcEEEEEEeecccHHHHHHHHHHHhccccceEEE
Confidence 47999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeCCChhhhhhHHHHHHHHhhhc-CCCCEEEEEeCCCCCcccc--CHHHHHHHHHcCCeEEEeccCCCCChHHHHHHHHH
Q 030504 93 FDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNRQV--KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLAR 169 (176)
Q Consensus 93 ~d~~~~~s~~~~~~~~~~~~~~~-~~~p~liv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l~~ 169 (176)
||++++++|+.+..|+....... +++-+++++||.||..... -.++-.++.+..+.++++|+++|+||+|.|-..++
T Consensus 89 YD~TsrdsfnaLtnWL~DaR~lAs~nIvviL~GnKkDL~~~R~VtflEAs~FaqEnel~flETSa~TGeNVEEaFl~c~~ 168 (214)
T KOG0086|consen 89 YDITSRDSFNALTNWLTDARTLASPNIVVILCGNKKDLDPEREVTFLEASRFAQENELMFLETSALTGENVEEAFLKCAR 168 (214)
T ss_pred EeccchhhHHHHHHHHHHHHhhCCCcEEEEEeCChhhcChhhhhhHHHHHhhhcccceeeeeecccccccHHHHHHHHHH
Confidence 99999999999999999888764 5778899999999986443 33566899999999999999999999999999888
Q ss_pred HHhcC
Q 030504 170 KLAGS 174 (176)
Q Consensus 170 ~i~~~ 174 (176)
.|..+
T Consensus 169 tIl~k 173 (214)
T KOG0086|consen 169 TILNK 173 (214)
T ss_pred HHHHH
Confidence 87654
|
|
| >PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-36 Score=197.42 Aligned_cols=158 Identities=36% Similarity=0.697 Sum_probs=146.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccccccccccEEEEEEe
Q 030504 15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFD 94 (176)
Q Consensus 15 ~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d 94 (176)
||+++|+++||||||+++|..+.+.+.+.++.|.+.....+..++..+.+.+||++|++.+...+..+++++|++|+|||
T Consensus 1 Ki~vvG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ii~fd 80 (162)
T PF00071_consen 1 KIVVVGDSGVGKTSLINRLINGEFPENYIPTIGIDSYSKEVSIDGKPVNLEIWDTSGQERFDSLRDIFYRNSDAIIIVFD 80 (162)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSSTTSSSETTSSEEEEEEEEEETTEEEEEEEEEETTSGGGHHHHHHHHTTESEEEEEEE
T ss_pred CEEEECCCCCCHHHHHHHHHhhcccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 79999999999999999999999999999999999999999999999999999999999999888999999999999999
Q ss_pred CCChhhhhhHHHHHHHHhhhcC-CCCEEEEEeCCCCCc-ccc-CHHHHHHHHHcCCeEEEeccCCCCChHHHHHHHHHHH
Q 030504 95 VTARLTYKNVPTWHRDLCRVCE-NIPIVLCGNKVDVKN-RQV-KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171 (176)
Q Consensus 95 ~~~~~s~~~~~~~~~~~~~~~~-~~p~liv~nK~Dl~~-~~~-~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l~~~i 171 (176)
++++.+++.+..|+..+....+ +.|+++++||+|+.. +.. ..+...++++++++|+++|++++.|+.++|..+++.+
T Consensus 81 ~~~~~S~~~~~~~~~~i~~~~~~~~~iivvg~K~D~~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~~i~~i 160 (162)
T PF00071_consen 81 VTDEESFENLKKWLEEIQKYKPEDIPIIVVGNKSDLSDEREVSVEEAQEFAKELGVPYFEVSAKNGENVKEIFQELIRKI 160 (162)
T ss_dssp TTBHHHHHTHHHHHHHHHHHSTTTSEEEEEEETTTGGGGSSSCHHHHHHHHHHTTSEEEEEBTTTTTTHHHHHHHHHHHH
T ss_pred ccccccccccccccccccccccccccceeeeccccccccccchhhHHHHHHHHhCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 9999999999999999998876 699999999999986 333 3456789999999999999999999999999999987
Q ss_pred h
Q 030504 172 A 172 (176)
Q Consensus 172 ~ 172 (176)
.
T Consensus 161 ~ 161 (162)
T PF00071_consen 161 L 161 (162)
T ss_dssp H
T ss_pred h
Confidence 5
|
This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A .... |
| >cd04108 Rab36_Rab34 Rab34/Rab36 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-36 Score=198.14 Aligned_cols=161 Identities=28% Similarity=0.449 Sum_probs=140.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccccccccccEEEEEEe
Q 030504 15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFD 94 (176)
Q Consensus 15 ~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d 94 (176)
||+++|.+|||||||+++|+.+.+...+.++.+.++....+...+..+.+.+|||+|++++...+..+++.+|++++|||
T Consensus 2 ki~ivG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d 81 (170)
T cd04108 2 KVIVVGDLSVGKTCLINRFCKDVFDKNYKATIGVDFEMERFEILGVPFSLQLWDTAGQERFKCIASTYYRGAQAIIIVFD 81 (170)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCChHHHHhhHHHHhcCCCEEEEEEE
Confidence 79999999999999999999999999999999988877777788888999999999999999999999999999999999
Q ss_pred CCChhhhhhHHHHHHHHhhh-cC-CCCEEEEEeCCCCCcccc----CHHHHHHHHHcCCeEEEeccCCCCChHHHHHHHH
Q 030504 95 VTARLTYKNVPTWHRDLCRV-CE-NIPIVLCGNKVDVKNRQV----KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLA 168 (176)
Q Consensus 95 ~~~~~s~~~~~~~~~~~~~~-~~-~~p~liv~nK~Dl~~~~~----~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l~ 168 (176)
++++.+++.+..|+..+.+. .+ ..|+++|+||.|+..... ..+...++++.+.+++++||++|.|++++|+.++
T Consensus 82 ~~~~~s~~~~~~~~~~~~~~~~~~~~~iilVgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~g~~v~~lf~~l~ 161 (170)
T cd04108 82 LTDVASLEHTRQWLEDALKENDPSSVLLFLVGTKKDLSSPAQYALMEQDAIKLAAEMQAEYWSVSALSGENVREFFFRVA 161 (170)
T ss_pred CcCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEChhcCccccccccHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHH
Confidence 99999999999999887654 23 567999999999965322 2234567777889999999999999999999999
Q ss_pred HHHhcCC
Q 030504 169 RKLAGST 175 (176)
Q Consensus 169 ~~i~~~~ 175 (176)
+.+.+-|
T Consensus 162 ~~~~~~~ 168 (170)
T cd04108 162 ALTFELG 168 (170)
T ss_pred HHHHHcc
Confidence 9887643
|
Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re |
| >cd04175 Rap1 Rap1 subgroup | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-36 Score=197.65 Aligned_cols=159 Identities=30% Similarity=0.552 Sum_probs=137.5
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccccccccccEEEEE
Q 030504 13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIM 92 (176)
Q Consensus 13 ~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 92 (176)
++||+++|.+|||||||++++..+.+...+.++.+..+ .......+..+.+.+|||+|++.+..++..+++++|++++|
T Consensus 1 ~~ki~~~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv 79 (164)
T cd04175 1 EYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSY-RKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFVLV 79 (164)
T ss_pred CcEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheE-EEEEEECCEEEEEEEEECCCcccchhHHHHHHhhCCEEEEE
Confidence 47999999999999999999999988888888887544 34566677788999999999999999999999999999999
Q ss_pred EeCCChhhhhhHHHHHHHHhhh--cCCCCEEEEEeCCCCCcccc-C-HHHHHHHHHcCCeEEEeccCCCCChHHHHHHHH
Q 030504 93 FDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQV-K-AKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLA 168 (176)
Q Consensus 93 ~d~~~~~s~~~~~~~~~~~~~~--~~~~p~liv~nK~Dl~~~~~-~-~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l~ 168 (176)
||++++.+++.+..|+..+... .++.|+++|+||+|+..... . .+...+++..+++++++||++|.|++++|.|++
T Consensus 80 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~ 159 (164)
T cd04175 80 YSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWGCAFLETSAKAKINVNEIFYDLV 159 (164)
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcchhccEEcHHHHHHHHHHhCCEEEEeeCCCCCCHHHHHHHHH
Confidence 9999999999999988888654 26899999999999976433 2 234567788889999999999999999999999
Q ss_pred HHHh
Q 030504 169 RKLA 172 (176)
Q Consensus 169 ~~i~ 172 (176)
+.+.
T Consensus 160 ~~l~ 163 (164)
T cd04175 160 RQIN 163 (164)
T ss_pred HHhh
Confidence 8775
|
The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n |
| >PTZ00369 Ras-like protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-36 Score=201.64 Aligned_cols=162 Identities=27% Similarity=0.525 Sum_probs=139.9
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccccccccccEEE
Q 030504 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (176)
Q Consensus 11 ~~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 90 (176)
.+.+||+++|.+|+|||||++++..+.+...+.++.+.++ .....+++..+.+.+|||+|++.+..++..+++.+++++
T Consensus 3 ~~~~Ki~iiG~~~~GKTsLi~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~ii 81 (189)
T PTZ00369 3 STEYKLVVVGGGGVGKSALTIQFIQNHFIDEYDPTIEDSY-RKQCVIDEETCLLDILDTAGQEEYSAMRDQYMRTGQGFL 81 (189)
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCCCCcCcCCchhhEE-EEEEEECCEEEEEEEEeCCCCccchhhHHHHhhcCCEEE
Confidence 4579999999999999999999999998888888887555 445667788889999999999999999999999999999
Q ss_pred EEEeCCChhhhhhHHHHHHHHhhhc--CCCCEEEEEeCCCCCccc--cCHHHHHHHHHcCCeEEEeccCCCCChHHHHHH
Q 030504 91 IMFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNRQ--VKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLY 166 (176)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~liv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~ 166 (176)
+|||++++.+++.+..|+..+.+.. ++.|+++|+||+|+.... ...+...+++..+++++++||++|.|++++|.+
T Consensus 82 lv~D~s~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~i~~~~~~~~~~~~~~~~~e~Sak~~~gi~~~~~~ 161 (189)
T PTZ00369 82 CVYSITSRSSFEEIASFREQILRVKDKDRVPMILVGNKCDLDSERQVSTGEGQELAKSFGIPFLETSAKQRVNVDEAFYE 161 (189)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHHhCCEEEEeeCCCCCCHHHHHHH
Confidence 9999999999999999988886653 488999999999996533 223455777778899999999999999999999
Q ss_pred HHHHHhc
Q 030504 167 LARKLAG 173 (176)
Q Consensus 167 l~~~i~~ 173 (176)
+++.+.+
T Consensus 162 l~~~l~~ 168 (189)
T PTZ00369 162 LVREIRK 168 (189)
T ss_pred HHHHHHH
Confidence 9987754
|
|
| >cd04134 Rho3 Rho3 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-36 Score=200.96 Aligned_cols=159 Identities=31% Similarity=0.500 Sum_probs=135.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccccccccccEEEEEE
Q 030504 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMF 93 (176)
Q Consensus 14 ~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 93 (176)
.||+++|.+|||||||+++|..+.+...+.++.+..+. .....++..+.+.+|||+|++.+..++..++..++++++||
T Consensus 1 ~kivivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~-~~i~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~a~~~ilv~ 79 (189)
T cd04134 1 RKVVVLGDGACGKTSLLNVFTRGYFPQVYEPTVFENYV-HDIFVDGLHIELSLWDTAGQEEFDRLRSLSYADTDVIMLCF 79 (189)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCccCCcceeeeE-EEEEECCEEEEEEEEECCCChhccccccccccCCCEEEEEE
Confidence 38999999999999999999999998888888875543 34556777889999999999999999999999999999999
Q ss_pred eCCChhhhhhHH-HHHHHHhhhcCCCCEEEEEeCCCCCcccc--------------CHHHHHHHHHcC-CeEEEeccCCC
Q 030504 94 DVTARLTYKNVP-TWHRDLCRVCENIPIVLCGNKVDVKNRQV--------------KAKQVTFHRKKN-LQYYEISAKSN 157 (176)
Q Consensus 94 d~~~~~s~~~~~-~~~~~~~~~~~~~p~liv~nK~Dl~~~~~--------------~~~~~~~~~~~~-~~~~~~S~~~~ 157 (176)
|++++.+|+.+. .|+..+....++.|+++|+||+|+..... ..+...+++..+ +.|++|||++|
T Consensus 80 dv~~~~sf~~~~~~~~~~i~~~~~~~piilvgNK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~ 159 (189)
T cd04134 80 SVDSPDSLENVESKWLGEIREHCPGVKLVLVALKCDLREARNERDDLQRYGKHTISYEEGLAVAKRINALRYLECSAKLN 159 (189)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEccCCcC
Confidence 999999999886 58888877667899999999999975321 123446666666 78999999999
Q ss_pred CChHHHHHHHHHHHhc
Q 030504 158 YNFEKPFLYLARKLAG 173 (176)
Q Consensus 158 ~~v~~~~~~l~~~i~~ 173 (176)
.|++++|.++++.+..
T Consensus 160 ~~v~e~f~~l~~~~~~ 175 (189)
T cd04134 160 RGVNEAFTEAARVALN 175 (189)
T ss_pred CCHHHHHHHHHHHHhc
Confidence 9999999999998764
|
Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. |
| >cd04136 Rap_like Rap-like subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-36 Score=196.51 Aligned_cols=158 Identities=31% Similarity=0.582 Sum_probs=135.1
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccccccccccEEEEE
Q 030504 13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIM 92 (176)
Q Consensus 13 ~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 92 (176)
.+||+++|.+|||||||++++..+.+...+.++.+ +.....+..++..+.+.+|||+|++++...+..++++++++++|
T Consensus 1 ~~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv 79 (163)
T cd04136 1 EYKVVVLGSGGVGKSALTVQFVQGIFVEKYDPTIE-DSYRKQIEVDGQQCMLEILDTAGTEQFTAMRDLYIKNGQGFVLV 79 (163)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCCCCcccCCchh-hhEEEEEEECCEEEEEEEEECCCccccchHHHHHhhcCCEEEEE
Confidence 37999999999999999999999998887788776 33344566777888999999999999999999999999999999
Q ss_pred EeCCChhhhhhHHHHHHHHhhhc--CCCCEEEEEeCCCCCccc-c-CHHHHHHHHHcCCeEEEeccCCCCChHHHHHHHH
Q 030504 93 FDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNRQ-V-KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLA 168 (176)
Q Consensus 93 ~d~~~~~s~~~~~~~~~~~~~~~--~~~p~liv~nK~Dl~~~~-~-~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l~ 168 (176)
||++++.+++.+..|+..+.... ++.|+++|+||+|+.... . ..+...+++..+++++++||++|.|++++|.+++
T Consensus 80 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~ 159 (163)
T cd04136 80 YSITSQSSFNDLQDLREQILRVKDTENVPMVLVGNKCDLEDERVVSREEGQALARQWGCPFYETSAKSKINVDEVFADLV 159 (163)
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceecHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHH
Confidence 99999999999999988886643 579999999999996532 2 2334567777789999999999999999999999
Q ss_pred HHH
Q 030504 169 RKL 171 (176)
Q Consensus 169 ~~i 171 (176)
+.+
T Consensus 160 ~~~ 162 (163)
T cd04136 160 RQI 162 (163)
T ss_pred Hhc
Confidence 865
|
The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres. |
| >cd04106 Rab23_lke Rab23-like subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-36 Score=195.52 Aligned_cols=157 Identities=32% Similarity=0.677 Sum_probs=139.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEec--CcEEEEEEEeCCCccccccccccccccccEEEE
Q 030504 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTN--CGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAII 91 (176)
Q Consensus 14 ~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~ 91 (176)
+||+++|.+++|||||++++..+.+...+.++.+.++........ +..+.+.+|||||++.+...+..+++++|++++
T Consensus 1 ~kv~~vG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~v~ 80 (162)
T cd04106 1 IKVIVVGNGNVGKSSMIQRFVKGIFTKDYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQEEFDAITKAYYRGAQACIL 80 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcEEEEEEEEEEEEcCCCCEEEEEEeeCCchHHHHHhHHHHhcCCCEEEE
Confidence 589999999999999999999999988888999888776666666 778899999999999999999999999999999
Q ss_pred EEeCCChhhhhhHHHHHHHHhhhcCCCCEEEEEeCCCCCcccc-C-HHHHHHHHHcCCeEEEeccCCCCChHHHHHHHHH
Q 030504 92 MFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQV-K-AKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLAR 169 (176)
Q Consensus 92 v~d~~~~~s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~~~~~-~-~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l~~ 169 (176)
|||++++.+++.+..|+..+....++.|+++|+||.|+..... . .+...+++..+++++++|++++.|++++|++|+.
T Consensus 81 v~d~~~~~s~~~l~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~ 160 (162)
T cd04106 81 VFSTTDRESFEAIESWKEKVEAECGDIPMVLVQTKIDLLDQAVITNEEAEALAKRLQLPLFRTSVKDDFNVTELFEYLAE 160 (162)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhcccccCCCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHH
Confidence 9999999999999999998877778999999999999975332 2 3456788888999999999999999999999986
Q ss_pred H
Q 030504 170 K 170 (176)
Q Consensus 170 ~ 170 (176)
.
T Consensus 161 ~ 161 (162)
T cd04106 161 K 161 (162)
T ss_pred h
Confidence 5
|
Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G |
| >cd04125 RabA_like RabA-like subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-36 Score=198.96 Aligned_cols=161 Identities=32% Similarity=0.599 Sum_probs=142.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccccccccccEEEEEE
Q 030504 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMF 93 (176)
Q Consensus 14 ~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 93 (176)
+||+++|.+|||||||+++|..+.+...+.++.+.++....+..++..+.+.+||++|++.+...+..+++++|++++||
T Consensus 1 ~ki~v~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~iilv~ 80 (188)
T cd04125 1 FKVVIIGDYGVGKSSLLKRFTEDEFSESTKSTIGVDFKIKTVYIENKIIKLQIWDTNGQERFRSLNNSYYRGAHGYLLVY 80 (188)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHhhHHHHccCCCEEEEEE
Confidence 58999999999999999999999998778899988887777777778899999999999999999999999999999999
Q ss_pred eCCChhhhhhHHHHHHHHhhhc-CCCCEEEEEeCCCCCccc-c-CHHHHHHHHHcCCeEEEeccCCCCChHHHHHHHHHH
Q 030504 94 DVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNRQ-V-KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARK 170 (176)
Q Consensus 94 d~~~~~s~~~~~~~~~~~~~~~-~~~p~liv~nK~Dl~~~~-~-~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l~~~ 170 (176)
|++++.+++.+..|+..+.... .+.|+++++||+|+.... . ......+++..+++++++||+++.|++++|.++++.
T Consensus 81 d~~~~~s~~~i~~~~~~i~~~~~~~~~~ivv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa~~~~~i~~~f~~l~~~ 160 (188)
T cd04125 81 DVTDQESFENLKFWINEINRYARENVIKVIVANKSDLVNNKVVDSNIAKSFCDSLNIPFFETSAKQSINVEEAFILLVKL 160 (188)
T ss_pred ECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCCCcccccCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHH
Confidence 9999999999999998887654 468999999999997533 2 234557777788999999999999999999999998
Q ss_pred HhcC
Q 030504 171 LAGS 174 (176)
Q Consensus 171 i~~~ 174 (176)
+..+
T Consensus 161 ~~~~ 164 (188)
T cd04125 161 IIKR 164 (188)
T ss_pred HHHH
Confidence 8754
|
RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. |
| >cd04109 Rab28 Rab28 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-36 Score=202.20 Aligned_cols=160 Identities=30% Similarity=0.519 Sum_probs=140.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecC-cEEEEEEEeCCCccccccccccccccccEEEEE
Q 030504 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNC-GKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIM 92 (176)
Q Consensus 14 ~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 92 (176)
+||+++|.+|||||||+++|..+.+...+.++.+.+.....+..++ ..+.+.+|||+|++.+...+..+++.+|++|+|
T Consensus 1 ~Ki~ivG~~~vGKSsLi~~l~~~~~~~~~~~T~~~d~~~~~i~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~ad~iilV 80 (215)
T cd04109 1 FKIVVLGDGAVGKTSLCRRFAKEGFGKSYKQTIGLDFFSKRVTLPGNLNVTLQVWDIGGQSIGGKMLDKYIYGAHAVFLV 80 (215)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCcHHHHHHHHHHhhcCCEEEEE
Confidence 5899999999999999999999999888999999888777777754 578999999999999999999999999999999
Q ss_pred EeCCChhhhhhHHHHHHHHhhhc----CCCCEEEEEeCCCCCc-cccC-HHHHHHHHHcCCeEEEeccCCCCChHHHHHH
Q 030504 93 FDVTARLTYKNVPTWHRDLCRVC----ENIPIVLCGNKVDVKN-RQVK-AKQVTFHRKKNLQYYEISAKSNYNFEKPFLY 166 (176)
Q Consensus 93 ~d~~~~~s~~~~~~~~~~~~~~~----~~~p~liv~nK~Dl~~-~~~~-~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~ 166 (176)
||++++.+++.+..|+..+.+.. .+.|+++|+||+|+.. +... .+...+++.++++++++||++|+|++++|++
T Consensus 81 ~D~t~~~s~~~~~~w~~~l~~~~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~~~~~~~~~~~iSAktg~gv~~lf~~ 160 (215)
T cd04109 81 YDVTNSQSFENLEDWYSMVRKVLKSSETQPLVVLVGNKTDLEHNRTVKDDKHARFAQANGMESCLVSAKTGDRVNLLFQQ 160 (215)
T ss_pred EECCCHHHHHHHHHHHHHHHHhccccCCCceEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHH
Confidence 99999999999999999887654 3468999999999974 3332 3456788888999999999999999999999
Q ss_pred HHHHHhc
Q 030504 167 LARKLAG 173 (176)
Q Consensus 167 l~~~i~~ 173 (176)
+++.+..
T Consensus 161 l~~~l~~ 167 (215)
T cd04109 161 LAAELLG 167 (215)
T ss_pred HHHHHHh
Confidence 9998864
|
First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs |
| >cd04112 Rab26 Rab26 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-35 Score=198.44 Aligned_cols=161 Identities=28% Similarity=0.580 Sum_probs=140.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCC-ccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccccccccccEEEEE
Q 030504 14 FKLVIVGDGGTGKTTFVKRHLTGEFEK-KYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIM 92 (176)
Q Consensus 14 ~~i~i~G~~~~GKttl~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 92 (176)
+||+++|.+|||||||++++..+.+.. .+.++.+.++......+++..+.+.+|||||++++...+..+++.+|++++|
T Consensus 1 ~Ki~vvG~~~vGKTSli~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~i~v 80 (191)
T cd04112 1 FKVMLLGDSGVGKTCLLVRFKDGAFLNGNFIATVGIDFRNKVVTVDGVKVKLQIWDTAGQERFRSVTHAYYRDAHALLLL 80 (191)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCccCcCCcccceeEEEEEEECCEEEEEEEEeCCCcHHHHHhhHHHccCCCEEEEE
Confidence 589999999999999999999988853 5677887777776677788889999999999999988889999999999999
Q ss_pred EeCCChhhhhhHHHHHHHHhhhc-CCCCEEEEEeCCCCCcc-cc-CHHHHHHHHHcCCeEEEeccCCCCChHHHHHHHHH
Q 030504 93 FDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNR-QV-KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLAR 169 (176)
Q Consensus 93 ~d~~~~~s~~~~~~~~~~~~~~~-~~~p~liv~nK~Dl~~~-~~-~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l~~ 169 (176)
||++++.+++.+..|+..+.+.. .+.|+++|+||.|+... .. ..+...+++..+++++++||++|.|++++|.+|++
T Consensus 81 ~D~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~~~~~~~~~~~~l~~~~~~~~~e~Sa~~~~~v~~l~~~l~~ 160 (191)
T cd04112 81 YDITNKASFDNIRAWLTEIKEYAQEDVVIMLLGNKADMSGERVVKREDGERLAKEYGVPFMETSAKTGLNVELAFTAVAK 160 (191)
T ss_pred EECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEcccchhccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHH
Confidence 99999999999999998888765 47899999999999642 22 34456777888999999999999999999999999
Q ss_pred HHhcC
Q 030504 170 KLAGS 174 (176)
Q Consensus 170 ~i~~~ 174 (176)
.+.++
T Consensus 161 ~~~~~ 165 (191)
T cd04112 161 ELKHR 165 (191)
T ss_pred HHHHh
Confidence 88765
|
First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. |
| >cd04111 Rab39 Rab39 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-35 Score=200.88 Aligned_cols=162 Identities=27% Similarity=0.559 Sum_probs=141.6
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEe-cCcEEEEEEEeCCCccccccccccccccccEEEE
Q 030504 13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFT-NCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAII 91 (176)
Q Consensus 13 ~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~ 91 (176)
.+||+++|.+|||||||++++..+.+...+.++.+.++....+.. ++..+.+.+|||+|++.+...+..+++++|++++
T Consensus 2 ~~KIvvvG~~~vGKTsLi~~l~~~~~~~~~~~ti~~d~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iil 81 (211)
T cd04111 2 QFRLIVIGDSTVGKSSLLKRFTEGRFAEVSDPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQERFRSITRSYYRNSVGVLL 81 (211)
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCceeceEEEEEEEEECCCCEEEEEEEeCCcchhHHHHHHHHhcCCcEEEE
Confidence 489999999999999999999999998888889888877776666 4667899999999999999999999999999999
Q ss_pred EEeCCChhhhhhHHHHHHHHhhhc--CCCCEEEEEeCCCCCccc-c-CHHHHHHHHHcCCeEEEeccCCCCChHHHHHHH
Q 030504 92 MFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNRQ-V-KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYL 167 (176)
Q Consensus 92 v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~liv~nK~Dl~~~~-~-~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l 167 (176)
|||++++.+++.+..|+..+.... ...|+++|+||+|+.... . ..+...+++..+++++++||++|.|++++|++|
T Consensus 82 v~D~~~~~Sf~~l~~~~~~i~~~~~~~~~~iilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~~v~e~f~~l 161 (211)
T cd04111 82 VFDITNRESFEHVHDWLEEARSHIQPHRPVFILVGHKCDLESQRQVTREEAEKLAKDLGMKYIETSARTGDNVEEAFELL 161 (211)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEccccccccccCHHHHHHHHHHhCCEEEEEeCCCCCCHHHHHHHH
Confidence 999999999999999999887654 357789999999997532 2 345567888889999999999999999999999
Q ss_pred HHHHhcC
Q 030504 168 ARKLAGS 174 (176)
Q Consensus 168 ~~~i~~~ 174 (176)
++.+.++
T Consensus 162 ~~~~~~~ 168 (211)
T cd04111 162 TQEIYER 168 (211)
T ss_pred HHHHHHH
Confidence 9987653
|
Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. |
| >cd04113 Rab4 Rab4 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-35 Score=193.22 Aligned_cols=158 Identities=32% Similarity=0.614 Sum_probs=140.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccccccccccEEEEEE
Q 030504 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMF 93 (176)
Q Consensus 14 ~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 93 (176)
+||+++|+++||||||+++++.+.+...+.++.+.++.......++..+.+.+||+||++.+...+..+++++|++++||
T Consensus 1 ~ki~v~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~~~~i~v~ 80 (161)
T cd04113 1 FKFIIIGSSGTGKSCLLHRFVENKFKEDSQHTIGVEFGSKIIRVGGKRVKLQIWDTAGQERFRSVTRSYYRGAAGALLVY 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEECcchHHHHHhHHHHhcCCCEEEEEE
Confidence 58999999999999999999999988888888888888877778888899999999999999999999999999999999
Q ss_pred eCCChhhhhhHHHHHHHHhhhc-CCCCEEEEEeCCCCCccc--cCHHHHHHHHHcCCeEEEeccCCCCChHHHHHHHHHH
Q 030504 94 DVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNRQ--VKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARK 170 (176)
Q Consensus 94 d~~~~~s~~~~~~~~~~~~~~~-~~~p~liv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l~~~ 170 (176)
|++++.+++.+..|+..+.... ++.|+++++||.|+.... ...+...+++..++.++++||+++.|++++|+++++.
T Consensus 81 d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~~~~~ 160 (161)
T cd04113 81 DITNRTSFEALPTWLSDARALASPNIVVILVGNKSDLADQREVTFLEASRFAQENGLLFLETSALTGENVEEAFLKCARS 160 (161)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhcchhccCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHh
Confidence 9999999999999988876553 689999999999997533 2345567888889999999999999999999999986
Q ss_pred H
Q 030504 171 L 171 (176)
Q Consensus 171 i 171 (176)
+
T Consensus 161 ~ 161 (161)
T cd04113 161 I 161 (161)
T ss_pred C
Confidence 4
|
Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p |
| >cd04116 Rab9 Rab9 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-35 Score=194.01 Aligned_cols=161 Identities=32% Similarity=0.617 Sum_probs=140.6
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccccccccccEEE
Q 030504 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (176)
Q Consensus 11 ~~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 90 (176)
...+||+++|.+++|||||++++..+.+.+.+.++.|.+.....+..++..+.+.+||++|++++..++..+++.+|+++
T Consensus 3 ~~~~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i 82 (170)
T cd04116 3 SSLLKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTLQIWDTAGQERFRSLRTPFYRGSDCCL 82 (170)
T ss_pred ceEEEEEEECCCCCCHHHHHHHHHcCCCCcCcCCceeeEEEEEEEEECCeEEEEEEEeCCChHHHHHhHHHHhcCCCEEE
Confidence 35699999999999999999999999998888888888777777778888999999999999999999999999999999
Q ss_pred EEEeCCChhhhhhHHHHHHHHhhhc-----CCCCEEEEEeCCCCCcccc-CHHHHHHHHHcC-CeEEEeccCCCCChHHH
Q 030504 91 IMFDVTARLTYKNVPTWHRDLCRVC-----ENIPIVLCGNKVDVKNRQV-KAKQVTFHRKKN-LQYYEISAKSNYNFEKP 163 (176)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~~-----~~~p~liv~nK~Dl~~~~~-~~~~~~~~~~~~-~~~~~~S~~~~~~v~~~ 163 (176)
+|||++++.+++.+..|+..+.... .+.|+++|+||+|+..+.. ..+..++++..+ ++++++||++|.|+.++
T Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~ 162 (170)
T cd04116 83 LTFAVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVVLGNKNDIPERQVSTEEAQAWCRENGDYPYFETSAKDATNVAAA 162 (170)
T ss_pred EEEECCCHHHHHhHHHHHHHHHHhcccccCCCCcEEEEEECccccccccCHHHHHHHHHHCCCCeEEEEECCCCCCHHHH
Confidence 9999999999999999988776532 4689999999999975433 345667788887 58999999999999999
Q ss_pred HHHHHHHH
Q 030504 164 FLYLARKL 171 (176)
Q Consensus 164 ~~~l~~~i 171 (176)
|.++++.+
T Consensus 163 ~~~~~~~~ 170 (170)
T cd04116 163 FEEAVRRV 170 (170)
T ss_pred HHHHHhhC
Confidence 99998763
|
Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX |
| >cd01868 Rab11_like Rab11-like | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-35 Score=193.46 Aligned_cols=159 Identities=33% Similarity=0.589 Sum_probs=141.0
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccccccccccEEEEE
Q 030504 13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIM 92 (176)
Q Consensus 13 ~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 92 (176)
.+||+++|.++||||||++++..+.+...+.++.+.++....+..++..+.+.+||+||++++...+..+++.++++++|
T Consensus 3 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v 82 (165)
T cd01868 3 LFKIVLIGDSGVGKSNLLSRFTRNEFNLDSKSTIGVEFATRSIQIDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLV 82 (165)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHCCCCEEEEE
Confidence 47999999999999999999999988888888998888888888888888999999999999999999999999999999
Q ss_pred EeCCChhhhhhHHHHHHHHhhhcC-CCCEEEEEeCCCCCccc--cCHHHHHHHHHcCCeEEEeccCCCCChHHHHHHHHH
Q 030504 93 FDVTARLTYKNVPTWHRDLCRVCE-NIPIVLCGNKVDVKNRQ--VKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLAR 169 (176)
Q Consensus 93 ~d~~~~~s~~~~~~~~~~~~~~~~-~~p~liv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l~~ 169 (176)
||++++.+++.+..|+..+.+..+ +.|+++|+||+|+.... ...+...+++..++.++++||++|.|++++|+++++
T Consensus 83 ~d~~~~~s~~~~~~~~~~~~~~~~~~~pi~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~ 162 (165)
T cd01868 83 YDITKKQTFENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTEEAKAFAEKNGLSFIETSALDGTNVEEAFKQLLT 162 (165)
T ss_pred EECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccccccCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHH
Confidence 999999999999999998877654 58999999999997532 233456777778899999999999999999999998
Q ss_pred HH
Q 030504 170 KL 171 (176)
Q Consensus 170 ~i 171 (176)
.+
T Consensus 163 ~i 164 (165)
T cd01868 163 EI 164 (165)
T ss_pred Hh
Confidence 76
|
Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP |
| >cd01866 Rab2 Rab2 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-35 Score=193.38 Aligned_cols=161 Identities=31% Similarity=0.557 Sum_probs=143.0
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccccccccccEEEEE
Q 030504 13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIM 92 (176)
Q Consensus 13 ~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 92 (176)
.+||+++|.+|||||||++++..+.+...+.++.|.+.....+...+..+.+.+||++|++++......+++++|++++|
T Consensus 4 ~~ki~vvG~~~vGKSsLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~il~v 83 (168)
T cd01866 4 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLV 83 (168)
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEEE
Confidence 48999999999999999999999998888888888888877777888888999999999999999999999999999999
Q ss_pred EeCCChhhhhhHHHHHHHHhhhc-CCCCEEEEEeCCCCCccc--cCHHHHHHHHHcCCeEEEeccCCCCChHHHHHHHHH
Q 030504 93 FDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNRQ--VKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLAR 169 (176)
Q Consensus 93 ~d~~~~~s~~~~~~~~~~~~~~~-~~~p~liv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l~~ 169 (176)
||++++.+++.+..|+..+.... ++.|+++|+||.|+.... ...+...++...++.++++||+++.|++++|.++++
T Consensus 84 ~d~~~~~s~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~~~~~~~ 163 (168)
T cd01866 84 YDITRRETFNHLTSWLEDARQHSNSNMTIMLIGNKCDLESRREVSYEEGEAFAKEHGLIFMETSAKTASNVEEAFINTAK 163 (168)
T ss_pred EECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHH
Confidence 99999999999999999887653 689999999999997432 233455778888999999999999999999999999
Q ss_pred HHhc
Q 030504 170 KLAG 173 (176)
Q Consensus 170 ~i~~ 173 (176)
.+.+
T Consensus 164 ~~~~ 167 (168)
T cd01866 164 EIYE 167 (168)
T ss_pred HHHh
Confidence 8865
|
Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur |
| >cd04132 Rho4_like Rho4-like subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-35 Score=197.51 Aligned_cols=160 Identities=30% Similarity=0.454 Sum_probs=136.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEec-CcEEEEEEEeCCCccccccccccccccccEEEEE
Q 030504 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTN-CGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIM 92 (176)
Q Consensus 14 ~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 92 (176)
+||+++|.+|+|||||++++..+.+...+.++.+..+... .... +..+.+.+|||+|++.+...+..+++++|++++|
T Consensus 1 ~ki~vvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~-i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~v 79 (187)
T cd04132 1 KKIVVVGDGGCGKTCLLIVYSQGKFPEEYVPTVFENYVTN-IQGPNGKIIELALWDTAGQEEYDRLRPLSYPDVDVLLIC 79 (187)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCCCCCeeeeeeEEE-EEecCCcEEEEEEEECCCchhHHHHHHHhCCCCCEEEEE
Confidence 5899999999999999999999999888888887665443 3343 6788999999999999999999999999999999
Q ss_pred EeCCChhhhhhHH-HHHHHHhhhcCCCCEEEEEeCCCCCccc------cCHHHHHHHHHcCC-eEEEeccCCCCChHHHH
Q 030504 93 FDVTARLTYKNVP-TWHRDLCRVCENIPIVLCGNKVDVKNRQ------VKAKQVTFHRKKNL-QYYEISAKSNYNFEKPF 164 (176)
Q Consensus 93 ~d~~~~~s~~~~~-~~~~~~~~~~~~~p~liv~nK~Dl~~~~------~~~~~~~~~~~~~~-~~~~~S~~~~~~v~~~~ 164 (176)
||++++.+++.+. .|+..+....++.|+++|+||+|+.... ...+...++...++ +++++||++|.|++++|
T Consensus 80 ~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f 159 (187)
T cd04132 80 YAVDNPTSLDNVEDKWFPEVNHFCPGTPIMLVGLKTDLRKDKNLDRKVTPAQAESVAKKQGAFAYLECSAKTMENVEEVF 159 (187)
T ss_pred EECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeChhhhhCccccCCcCHHHHHHHHHHcCCcEEEEccCCCCCCHHHHH
Confidence 9999999999986 5887776666789999999999986532 23345677888888 99999999999999999
Q ss_pred HHHHHHHhcC
Q 030504 165 LYLARKLAGS 174 (176)
Q Consensus 165 ~~l~~~i~~~ 174 (176)
.++++.+...
T Consensus 160 ~~l~~~~~~~ 169 (187)
T cd04132 160 DTAIEEALKK 169 (187)
T ss_pred HHHHHHHHhh
Confidence 9999988764
|
Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. |
| >cd04176 Rap2 Rap2 subgroup | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-35 Score=193.20 Aligned_cols=158 Identities=29% Similarity=0.538 Sum_probs=135.7
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccccccccccEEEEE
Q 030504 13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIM 92 (176)
Q Consensus 13 ~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 92 (176)
++||+++|.+|+|||||++++..+.+...+.++.+ +........++..+.+.+|||+|++++..++..+++++|++++|
T Consensus 1 ~~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~i~v 79 (163)
T cd04176 1 EYKVVVLGSGGVGKSALTVQFVSGTFIEKYDPTIE-DFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFIVV 79 (163)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCchh-heEEEEEEECCEEEEEEEEECCCcccccchHHHHHhhCCEEEEE
Confidence 47999999999999999999999999888777765 44455666777788999999999999999999999999999999
Q ss_pred EeCCChhhhhhHHHHHHHHhhhc--CCCCEEEEEeCCCCCcccc-C-HHHHHHHHHcCCeEEEeccCCCCChHHHHHHHH
Q 030504 93 FDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNRQV-K-AKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLA 168 (176)
Q Consensus 93 ~d~~~~~s~~~~~~~~~~~~~~~--~~~p~liv~nK~Dl~~~~~-~-~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l~ 168 (176)
||++++.+++.+..|+..+.... .+.|+++|+||+|+..+.. . .+...+++..+++++++||+++.|++++|.+++
T Consensus 80 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piviv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~ 159 (163)
T cd04176 80 YSLVNQQTFQDIKPMRDQIVRVKGYEKVPIILVGNKVDLESEREVSSAEGRALAEEWGCPFMETSAKSKTMVNELFAEIV 159 (163)
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcCccCHHHHHHHHHHhCCEEEEecCCCCCCHHHHHHHHH
Confidence 99999999999999988887653 5899999999999965332 2 234566677788999999999999999999998
Q ss_pred HHH
Q 030504 169 RKL 171 (176)
Q Consensus 169 ~~i 171 (176)
+.+
T Consensus 160 ~~l 162 (163)
T cd04176 160 RQM 162 (163)
T ss_pred Hhc
Confidence 765
|
The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl |
| >cd04118 Rab24 Rab24 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-35 Score=196.78 Aligned_cols=161 Identities=27% Similarity=0.473 Sum_probs=140.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCC-ccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccccccccccEEEEE
Q 030504 14 FKLVIVGDGGTGKTTFVKRHLTGEFEK-KYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIM 92 (176)
Q Consensus 14 ~~i~i~G~~~~GKttl~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 92 (176)
+||+++|.+|+|||||+++|..+++.. .+.++.+.++....+..++..+.+.+||++|++++...+..+++++|++++|
T Consensus 1 ~ki~vvG~~~vGKSsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~iilv 80 (193)
T cd04118 1 VKVVMLGKESVGKTSLVERYVHHRFLVGPYQNTIGAAFVAKRMVVGERVVTLGIWDTAGSERYEAMSRIYYRGAKAAIVC 80 (193)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCcCCcCcccceeeEEEEEEEEECCEEEEEEEEECCCchhhhhhhHhhcCCCCEEEEE
Confidence 589999999999999999999999874 6788888877777778888889999999999999999999999999999999
Q ss_pred EeCCChhhhhhHHHHHHHHhhhcCCCCEEEEEeCCCCCccc-----c-CHHHHHHHHHcCCeEEEeccCCCCChHHHHHH
Q 030504 93 FDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQ-----V-KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLY 166 (176)
Q Consensus 93 ~d~~~~~s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~~~~-----~-~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~ 166 (176)
||++++.+++.+..|+..+....++.|+++|+||+|+.... . ..+...++...+++++++||+++.|++++|++
T Consensus 81 ~d~~~~~s~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~ 160 (193)
T cd04118 81 YDLTDSSSFERAKFWVKELQNLEEHCKIYLCGTKSDLIEQDRSLRQVDFHDVQDFADEIKAQHFETSSKTGQNVDELFQK 160 (193)
T ss_pred EECCCHHHHHHHHHHHHHHHhcCCCCCEEEEEEcccccccccccCccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHH
Confidence 99999999999999998887766689999999999986421 1 12345667778899999999999999999999
Q ss_pred HHHHHhcC
Q 030504 167 LARKLAGS 174 (176)
Q Consensus 167 l~~~i~~~ 174 (176)
+++.+.++
T Consensus 161 i~~~~~~~ 168 (193)
T cd04118 161 VAEDFVSR 168 (193)
T ss_pred HHHHHHHh
Confidence 99988654
|
Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita |
| >cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-35 Score=192.17 Aligned_cols=158 Identities=30% Similarity=0.561 Sum_probs=136.0
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccccccccccEEEEE
Q 030504 13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIM 92 (176)
Q Consensus 13 ~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 92 (176)
.+||+++|.+|||||||++++..+.+...+.++.+..+ ......++..+.+.+|||+|++.+..++..+++.++++++|
T Consensus 1 ~~ki~iiG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~~~~~i~v 79 (162)
T cd04138 1 EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCV 79 (162)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCCCcCCcCCcchheE-EEEEEECCEEEEEEEEECCCCcchHHHHHHHHhcCCEEEEE
Confidence 37999999999999999999999988888888876443 44456677778899999999999999999999999999999
Q ss_pred EeCCChhhhhhHHHHHHHHhhhc--CCCCEEEEEeCCCCCccccC-HHHHHHHHHcCCeEEEeccCCCCChHHHHHHHHH
Q 030504 93 FDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNRQVK-AKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLAR 169 (176)
Q Consensus 93 ~d~~~~~s~~~~~~~~~~~~~~~--~~~p~liv~nK~Dl~~~~~~-~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l~~ 169 (176)
||++++.+++.+..|+..+.+.. .+.|+++|+||+|+..+... .+...+++..+++++++||++|.|++++|+++++
T Consensus 80 ~~~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~ 159 (162)
T cd04138 80 FAINSRKSFEDIHTYREQIKRVKDSDDVPMVLVGNKCDLAARTVSSRQGQDLAKSYGIPYIETSAKTRQGVEEAFYTLVR 159 (162)
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccceecHHHHHHHHHHhCCeEEEecCCCCCCHHHHHHHHHH
Confidence 99999999999988888887653 58899999999999764433 3455777788999999999999999999999997
Q ss_pred HH
Q 030504 170 KL 171 (176)
Q Consensus 170 ~i 171 (176)
.+
T Consensus 160 ~~ 161 (162)
T cd04138 160 EI 161 (162)
T ss_pred Hh
Confidence 65
|
H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1. |
| >cd04144 Ras2 Ras2 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-35 Score=198.49 Aligned_cols=159 Identities=31% Similarity=0.525 Sum_probs=135.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccccccccccEEEEEEe
Q 030504 15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFD 94 (176)
Q Consensus 15 ~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d 94 (176)
||+++|.+|||||||+++|..+.+...+.++.+..+ ......++..+.+.+|||+|++++...+..+++.+|++++|||
T Consensus 1 ki~ivG~~~vGKTsli~~l~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d 79 (190)
T cd04144 1 KLVVLGDGGVGKTALTIQLCLNHFVETYDPTIEDSY-RKQVVVDGQPCMLEVLDTAGQEEYTALRDQWIREGEGFILVYS 79 (190)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCccCCCchHhhE-EEEEEECCEEEEEEEEECCCchhhHHHHHHHHHhCCEEEEEEE
Confidence 689999999999999999999998888888877444 3345567778899999999999999999999999999999999
Q ss_pred CCChhhhhhHHHHHHHHhhhc----CCCCEEEEEeCCCCCcccc--CHHHHHHHHHcCCeEEEeccCCCCChHHHHHHHH
Q 030504 95 VTARLTYKNVPTWHRDLCRVC----ENIPIVLCGNKVDVKNRQV--KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLA 168 (176)
Q Consensus 95 ~~~~~s~~~~~~~~~~~~~~~----~~~p~liv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l~ 168 (176)
++++.+++.+..|+..+.... ++.|+++|+||+|+..... ..+..+++...++.++++||++|.|++++|.+++
T Consensus 80 ~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SAk~~~~v~~l~~~l~ 159 (190)
T cd04144 80 ITSRSTFERVERFREQIQRVKDESAADVPIMIVGNKCDKVYEREVSTEEGAALARRLGCEFIEASAKTNVNVERAFYTLV 159 (190)
T ss_pred CCCHHHHHHHHHHHHHHHHHhcccCCCCCEEEEEEChhccccCccCHHHHHHHHHHhCCEEEEecCCCCCCHHHHHHHHH
Confidence 999999999999988876542 4789999999999964322 2345577788889999999999999999999999
Q ss_pred HHHhcC
Q 030504 169 RKLAGS 174 (176)
Q Consensus 169 ~~i~~~ 174 (176)
+.+.++
T Consensus 160 ~~l~~~ 165 (190)
T cd04144 160 RALRQQ 165 (190)
T ss_pred HHHHHh
Confidence 987643
|
The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. |
| >cd01864 Rab19 Rab19 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-35 Score=192.23 Aligned_cols=159 Identities=33% Similarity=0.618 Sum_probs=138.8
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccccccccccEEEEE
Q 030504 13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIM 92 (176)
Q Consensus 13 ~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 92 (176)
.+||+++|++|+|||||++++..+.+...+.++.+.+.....+..++..+.+.+||+||++.+...+..+++.+|++++|
T Consensus 3 ~~kv~vvG~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~llv 82 (165)
T cd01864 3 LFKIILIGDSNVGKTCVVQRFKSGTFSERQGNTIGVDFTMKTLEIEGKRVKLQIWDTAGQERFRTITQSYYRSANGAIIA 82 (165)
T ss_pred eeEEEEECCCCCCHHHHHHHHhhCCCcccCCCccceEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEEE
Confidence 58999999999999999999999998888888888777777777777778999999999999999999999999999999
Q ss_pred EeCCChhhhhhHHHHHHHHhhhc-CCCCEEEEEeCCCCCccc-c-CHHHHHHHHHcCC-eEEEeccCCCCChHHHHHHHH
Q 030504 93 FDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNRQ-V-KAKQVTFHRKKNL-QYYEISAKSNYNFEKPFLYLA 168 (176)
Q Consensus 93 ~d~~~~~s~~~~~~~~~~~~~~~-~~~p~liv~nK~Dl~~~~-~-~~~~~~~~~~~~~-~~~~~S~~~~~~v~~~~~~l~ 168 (176)
||++++.+++.+..|+..+.... .+.|+++|+||+|+.... . ..+..++++..+. .++++||++|.|++++|++++
T Consensus 83 ~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~~~~l~ 162 (165)
T cd01864 83 YDITRRSSFESVPHWIEEVEKYGASNVVLLLIGNKCDLEEQREVLFEEACTLAEKNGMLAVLETSAKESQNVEEAFLLMA 162 (165)
T ss_pred EECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCcEEEEEECCCCCCHHHHHHHHH
Confidence 99999999999999999887653 578999999999997543 2 2345677777775 789999999999999999998
Q ss_pred HHH
Q 030504 169 RKL 171 (176)
Q Consensus 169 ~~i 171 (176)
+.+
T Consensus 163 ~~l 165 (165)
T cd01864 163 TEL 165 (165)
T ss_pred HhC
Confidence 753
|
Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. |
| >cd01873 RhoBTB RhoBTB subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-35 Score=196.36 Aligned_cols=156 Identities=21% Similarity=0.386 Sum_probs=126.1
Q ss_pred eeEEEEEcCCCCcHHHHHH-HHhcC-----CCCCccccceeE-EEeEEE--------EEecCcEEEEEEEeCCCcccccc
Q 030504 13 SFKLVIVGDGGTGKTTFVK-RHLTG-----EFEKKYEPTIGV-EVHPLD--------FFTNCGKIRFYCWDTAGQEKFGG 77 (176)
Q Consensus 13 ~~~i~i~G~~~~GKttl~~-~~~~~-----~~~~~~~~~~~~-~~~~~~--------~~~~~~~~~~~~~D~~g~~~~~~ 77 (176)
.+||+++|..+||||||+. ++..+ .+...+.||.+. +..... ..+++..+.+.+|||+|++. .
T Consensus 2 ~~Kiv~vG~~~vGKTsLi~~~~~~~~~~~~~f~~~~~pTi~~~~~~~~~~~~~~~~~~~~~~~~v~l~iwDTaG~~~--~ 79 (195)
T cd01873 2 TIKCVVVGDNAVGKTRLICARACNKTLTQYQLLATHVPTVWAIDQYRVCQEVLERSRDVVDGVSVSLRLWDTFGDHD--K 79 (195)
T ss_pred ceEEEEECCCCcCHHHHHHHHHhCCCcccccCccccCCceecccceeEEeeeccccceeeCCEEEEEEEEeCCCChh--h
Confidence 5899999999999999996 54443 345667788763 322211 24577889999999999975 3
Q ss_pred ccccccccccEEEEEEeCCChhhhhhHH-HHHHHHhhhcCCCCEEEEEeCCCCCc--------------------cc-cC
Q 030504 78 LRDGYYIHGQCAIIMFDVTARLTYKNVP-TWHRDLCRVCENIPIVLCGNKVDVKN--------------------RQ-VK 135 (176)
Q Consensus 78 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~p~liv~nK~Dl~~--------------------~~-~~ 135 (176)
....+++++|++++|||++++.+|+.+. .|+..+....++.|+++|+||+||.. +. ..
T Consensus 80 ~~~~~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~~~~~piilvgNK~DL~~~~~~~~~~~~~~~~~~~~~~~~V~~ 159 (195)
T cd01873 80 DRRFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFCPRVPVILVGCKLDLRYADLDEVNRARRPLARPIKNADILPP 159 (195)
T ss_pred hhcccCCCCCEEEEEEECCChhHHHHHHHHHHHHHHHhCCCCCEEEEEEchhccccccchhhhcccccccccccCCccCH
Confidence 4566889999999999999999999997 58888877667899999999999863 12 23
Q ss_pred HHHHHHHHHcCCeEEEeccCCCCChHHHHHHHHHH
Q 030504 136 AKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARK 170 (176)
Q Consensus 136 ~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l~~~ 170 (176)
.+...++++.+++|+||||++|.||+++|+.++++
T Consensus 160 ~e~~~~a~~~~~~~~E~SAkt~~~V~e~F~~~~~~ 194 (195)
T cd01873 160 ETGRAVAKELGIPYYETSVVTQFGVKDVFDNAIRA 194 (195)
T ss_pred HHHHHHHHHhCCEEEEcCCCCCCCHHHHHHHHHHh
Confidence 45678999999999999999999999999999875
|
Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature. |
| >cd04140 ARHI_like ARHI subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-35 Score=192.21 Aligned_cols=155 Identities=28% Similarity=0.453 Sum_probs=132.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccccccccccEEEEEE
Q 030504 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMF 93 (176)
Q Consensus 14 ~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 93 (176)
+||+++|.+|||||||+++++.+.+...+.++.+.++ ......+...+.+.+|||+|++++..++..+++.++++++||
T Consensus 2 ~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~ 80 (165)
T cd04140 2 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTY-RQVISCSKNICTLQITDTTGSHQFPAMQRLSISKGHAFILVY 80 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCCcCCcchheE-EEEEEECCEEEEEEEEECCCCCcchHHHHHHhhcCCEEEEEE
Confidence 7999999999999999999999998887788776444 334455667889999999999999988888999999999999
Q ss_pred eCCChhhhhhHHHHHHHHhhhc----CCCCEEEEEeCCCCCc-ccc-CHHHHHHHHHcCCeEEEeccCCCCChHHHHHHH
Q 030504 94 DVTARLTYKNVPTWHRDLCRVC----ENIPIVLCGNKVDVKN-RQV-KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYL 167 (176)
Q Consensus 94 d~~~~~s~~~~~~~~~~~~~~~----~~~p~liv~nK~Dl~~-~~~-~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l 167 (176)
|++++.+++.+..|+..+.+.. ++.|+++|+||+|+.. +.. ..+...++...++.+++|||++|.|++++|+||
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SA~~g~~v~~~f~~l 160 (165)
T cd04140 81 SVTSKQSLEELKPIYELICEIKGNNIEKIPIMLVGNKCDESHKREVSSNEGAACATEWNCAFMETSAKTNHNVQELFQEL 160 (165)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEECccccccCeecHHHHHHHHHHhCCcEEEeecCCCCCHHHHHHHH
Confidence 9999999999998887776542 5789999999999975 333 334556777788999999999999999999999
Q ss_pred HH
Q 030504 168 AR 169 (176)
Q Consensus 168 ~~ 169 (176)
+.
T Consensus 161 ~~ 162 (165)
T cd04140 161 LN 162 (165)
T ss_pred Hh
Confidence 75
|
ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to |
| >KOG0095 consensus GTPase Rab30, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-36 Score=184.22 Aligned_cols=159 Identities=34% Similarity=0.607 Sum_probs=144.9
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccccccccccEEEEE
Q 030504 13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIM 92 (176)
Q Consensus 13 ~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 92 (176)
-+||+++|..|+|||+|+++|..|-|++....|+|+++..+++.+.+..+++++|||+|+|+++++...||+.++++|+|
T Consensus 7 lfkivlvgnagvgktclvrrftqglfppgqgatigvdfmiktvev~gekiklqiwdtagqerfrsitqsyyrsahalilv 86 (213)
T KOG0095|consen 7 LFKIVLVGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEVNGEKIKLQIWDTAGQERFRSITQSYYRSAHALILV 86 (213)
T ss_pred eEEEEEEccCCcCcchhhhhhhccCCCCCCCceeeeeEEEEEEEECCeEEEEEEeeccchHHHHHHHHHHhhhcceEEEE
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeCCChhhhhhHHHHHHHHhhhcC-CCCEEEEEeCCCCCccccCH--HHHHHHHHcCCeEEEeccCCCCChHHHHHHHHH
Q 030504 93 FDVTARLTYKNVPTWHRDLCRVCE-NIPIVLCGNKVDVKNRQVKA--KQVTFHRKKNLQYYEISAKSNYNFEKPFLYLAR 169 (176)
Q Consensus 93 ~d~~~~~s~~~~~~~~~~~~~~~~-~~p~liv~nK~Dl~~~~~~~--~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l~~ 169 (176)
||++...+|+-+..|+..+.+... ..-.++|+||.|+.++.... ...++.+.....|+++||+..+|++.+|..++-
T Consensus 87 ydiscqpsfdclpewlreie~yan~kvlkilvgnk~d~~drrevp~qigeefs~~qdmyfletsakea~nve~lf~~~a~ 166 (213)
T KOG0095|consen 87 YDISCQPSFDCLPEWLREIEQYANNKVLKILVGNKIDLADRREVPQQIGEEFSEAQDMYFLETSAKEADNVEKLFLDLAC 166 (213)
T ss_pred EecccCcchhhhHHHHHHHHHHhhcceEEEeeccccchhhhhhhhHHHHHHHHHhhhhhhhhhcccchhhHHHHHHHHHH
Confidence 999999999999999999988754 45569999999998754333 345888888888999999999999999998876
Q ss_pred HH
Q 030504 170 KL 171 (176)
Q Consensus 170 ~i 171 (176)
.+
T Consensus 167 rl 168 (213)
T KOG0095|consen 167 RL 168 (213)
T ss_pred HH
Confidence 54
|
|
| >PLN03110 Rab GTPase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-35 Score=199.13 Aligned_cols=162 Identities=32% Similarity=0.548 Sum_probs=144.7
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccccccccccEEEE
Q 030504 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAII 91 (176)
Q Consensus 12 ~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~ 91 (176)
..+||+++|++|||||||+++|..+.+...+.++.|.++....+..++..+.+.+||++|++++...+..+++.++++++
T Consensus 11 ~~~Ki~ivG~~~vGKStLi~~l~~~~~~~~~~~t~g~~~~~~~v~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~~~~il 90 (216)
T PLN03110 11 YLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALL 90 (216)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhCCCCEEEE
Confidence 46899999999999999999999999888888999999888888888888999999999999999999999999999999
Q ss_pred EEeCCChhhhhhHHHHHHHHhhhc-CCCCEEEEEeCCCCCccc-c-CHHHHHHHHHcCCeEEEeccCCCCChHHHHHHHH
Q 030504 92 MFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNRQ-V-KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLA 168 (176)
Q Consensus 92 v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~liv~nK~Dl~~~~-~-~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l~ 168 (176)
|||++++.+++.+..|+..+.... .+.|+++|+||+|+.... . ..+...++...+++++++||++|.|++++|++++
T Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~l~~~~~~~~~e~SA~~g~~v~~lf~~l~ 170 (216)
T PLN03110 91 VYDITKRQTFDNVQRWLRELRDHADSNIVIMMAGNKSDLNHLRSVAEEDGQALAEKEGLSFLETSALEATNVEKAFQTIL 170 (216)
T ss_pred EEECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEEChhcccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHH
Confidence 999999999999999998887664 479999999999986533 2 3345677788899999999999999999999999
Q ss_pred HHHhc
Q 030504 169 RKLAG 173 (176)
Q Consensus 169 ~~i~~ 173 (176)
+.+.+
T Consensus 171 ~~i~~ 175 (216)
T PLN03110 171 LEIYH 175 (216)
T ss_pred HHHHH
Confidence 88754
|
|
| >cd04126 Rab20 Rab20 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-35 Score=198.22 Aligned_cols=155 Identities=29% Similarity=0.477 Sum_probs=129.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccccccccccEEEEEE
Q 030504 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMF 93 (176)
Q Consensus 14 ~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 93 (176)
+||+++|.++||||||+++|+.+.+.. +.++.+.++..... ..+.+.+|||+|++.+..++..+++.+|++|+||
T Consensus 1 ~KIvivG~~~vGKTSLi~r~~~~~f~~-~~~Tig~~~~~~~~----~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~IlV~ 75 (220)
T cd04126 1 LKVVLLGDMNVGKTSLLHRYMERRFKD-TVSTVGGAFYLKQW----GPYNISIWDTAGREQFHGLGSMYCRGAAAVILTY 75 (220)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCCCC-CCCccceEEEEEEe----eEEEEEEEeCCCcccchhhHHHHhccCCEEEEEE
Confidence 589999999999999999999999875 57777765544333 5678999999999999999999999999999999
Q ss_pred eCCChhhhhhHHHHHHHHhhh-cCCCCEEEEEeCCCCCc--------------------ccc-CHHHHHHHHHcC-----
Q 030504 94 DVTARLTYKNVPTWHRDLCRV-CENIPIVLCGNKVDVKN--------------------RQV-KAKQVTFHRKKN----- 146 (176)
Q Consensus 94 d~~~~~s~~~~~~~~~~~~~~-~~~~p~liv~nK~Dl~~--------------------~~~-~~~~~~~~~~~~----- 146 (176)
|++++.+|+.+..|+..+.+. .++.|+++|+||+|+.. +.+ .++...++++.+
T Consensus 76 Dvt~~~Sf~~l~~~~~~l~~~~~~~~piIlVgNK~DL~~~~~~~~~~~~~~~~~~~~~~r~v~~~e~~~~a~~~~~~~~~ 155 (220)
T cd04126 76 DVSNVQSLEELEDRFLGLTDTANEDCLFAVVGNKLDLTEEGALAGQEKDAGDRVSPEDQRQVTLEDAKAFYKRINKYKML 155 (220)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccccccccccccccccccccCCHHHHHHHHHHhCccccc
Confidence 999999999998877776654 35789999999999864 111 234567777765
Q ss_pred ---------CeEEEeccCCCCChHHHHHHHHHHHhc
Q 030504 147 ---------LQYYEISAKSNYNFEKPFLYLARKLAG 173 (176)
Q Consensus 147 ---------~~~~~~S~~~~~~v~~~~~~l~~~i~~ 173 (176)
++|+||||++|.||+++|.++++.+.+
T Consensus 156 ~~~~~~~~~~~~~E~SA~tg~~V~elf~~i~~~~~~ 191 (220)
T cd04126 156 DEDLSPAAEKMCFETSAKTGYNVDELFEYLFNLVLP 191 (220)
T ss_pred cccccccccceEEEeeCCCCCCHHHHHHHHHHHHHH
Confidence 689999999999999999999988764
|
Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo |
| >cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-35 Score=191.57 Aligned_cols=159 Identities=31% Similarity=0.594 Sum_probs=140.2
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccc-cccccccccccEEEE
Q 030504 13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFG-GLRDGYYIHGQCAII 91 (176)
Q Consensus 13 ~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~-~~~~~~~~~~~~~i~ 91 (176)
.+||+++|++|+|||||+++++.+.+...+.++.+.++....+..++..+.+.+||++|++.+. .++..+++++|++++
T Consensus 2 ~~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~d~~i~ 81 (170)
T cd04115 2 IFKIIVIGDSNVGKTCLTYRFCAGRFPERTEATIGVDFRERTVEIDGERIKVQLWDTAGQERFRKSMVQHYYRNVHAVVF 81 (170)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCCccccceeEEEEEEEEEECCeEEEEEEEeCCChHHHHHhhHHHhhcCCCEEEE
Confidence 5899999999999999999999999988888898888887778888888999999999999886 578888999999999
Q ss_pred EEeCCChhhhhhHHHHHHHHhhhc--CCCCEEEEEeCCCCCccc-c-CHHHHHHHHHcCCeEEEeccCC---CCChHHHH
Q 030504 92 MFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNRQ-V-KAKQVTFHRKKNLQYYEISAKS---NYNFEKPF 164 (176)
Q Consensus 92 v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~liv~nK~Dl~~~~-~-~~~~~~~~~~~~~~~~~~S~~~---~~~v~~~~ 164 (176)
|||++++.+++.+..|+..+.... .+.|+++|+||+|+.... . ..+...+++..+++++++||++ +.+++++|
T Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~~~~i~~~f 161 (170)
T cd04115 82 VYDVTNMASFHSLPSWIEECEQHSLPNEVPRILVGNKCDLREQIQVPTDLAQRFADAHSMPLFETSAKDPSENDHVEAIF 161 (170)
T ss_pred EEECCCHHHHHhHHHHHHHHHHhcCCCCCCEEEEEECccchhhcCCCHHHHHHHHHHcCCcEEEEeccCCcCCCCHHHHH
Confidence 999999999999999998887653 579999999999997533 2 3345577888889999999999 89999999
Q ss_pred HHHHHHH
Q 030504 165 LYLARKL 171 (176)
Q Consensus 165 ~~l~~~i 171 (176)
.++++.+
T Consensus 162 ~~l~~~~ 168 (170)
T cd04115 162 MTLAHKL 168 (170)
T ss_pred HHHHHHh
Confidence 9999876
|
Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine |
| >PTZ00132 GTP-binding nuclear protein Ran; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-34 Score=196.56 Aligned_cols=168 Identities=80% Similarity=1.377 Sum_probs=150.7
Q ss_pred CCCCeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccccccccccE
Q 030504 9 VDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQC 88 (176)
Q Consensus 9 ~~~~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~ 88 (176)
.+...+||+++|++|||||||+++++.+.+...+.++.+.++....+..+...+.+.+||++|++.+...+..++.++++
T Consensus 5 ~~~~~~kv~liG~~g~GKTtLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~i~~~Dt~g~~~~~~~~~~~~~~~~~ 84 (215)
T PTZ00132 5 DEVPEFKLILVGDGGVGKTTFVKRHLTGEFEKKYIPTLGVEVHPLKFYTNCGPICFNVWDTAGQEKFGGLRDGYYIKGQC 84 (215)
T ss_pred cCCCCceEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHhccCCE
Confidence 44567999999999999999999999999988899999998888877778889999999999999998889999999999
Q ss_pred EEEEEeCCChhhhhhHHHHHHHHhhhcCCCCEEEEEeCCCCCccccCHHHHHHHHHcCCeEEEeccCCCCChHHHHHHHH
Q 030504 89 AIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLA 168 (176)
Q Consensus 89 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l~ 168 (176)
+++|||+++..++..+..|+..+....++.|+++++||+|+.++....+...+++..++.++++|+++|.|++++|.+++
T Consensus 85 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~i~lv~nK~Dl~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~ia 164 (215)
T PTZ00132 85 AIIMFDVTSRITYKNVPNWHRDIVRVCENIPIVLVGNKVDVKDRQVKARQITFHRKKNLQYYDISAKSNYNFEKPFLWLA 164 (215)
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECccCccccCCHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHH
Confidence 99999999999999999999888777778999999999999765555555677788889999999999999999999999
Q ss_pred HHHhcCCC
Q 030504 169 RKLAGSTD 176 (176)
Q Consensus 169 ~~i~~~~~ 176 (176)
+.+.++|+
T Consensus 165 ~~l~~~p~ 172 (215)
T PTZ00132 165 RRLTNDPN 172 (215)
T ss_pred HHHhhccc
Confidence 99987763
|
|
| >PLN03108 Rab family protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-35 Score=198.08 Aligned_cols=162 Identities=31% Similarity=0.547 Sum_probs=143.5
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccccccccccEEEEE
Q 030504 13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIM 92 (176)
Q Consensus 13 ~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 92 (176)
.+||+++|++|+|||||++++..+.+...+.++.+.++....+..++..+.+.+|||+|++.+...+..+++.+|++++|
T Consensus 6 ~~kivivG~~gvGKStLi~~l~~~~~~~~~~~ti~~~~~~~~i~~~~~~i~l~l~Dt~G~~~~~~~~~~~~~~ad~~vlv 85 (210)
T PLN03108 6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLV 85 (210)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCCEEEEE
Confidence 58999999999999999999999988888888988888777778888888999999999999999999999999999999
Q ss_pred EeCCChhhhhhHHHHHHHHhhhc-CCCCEEEEEeCCCCCccc--cCHHHHHHHHHcCCeEEEeccCCCCChHHHHHHHHH
Q 030504 93 FDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNRQ--VKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLAR 169 (176)
Q Consensus 93 ~d~~~~~s~~~~~~~~~~~~~~~-~~~p~liv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l~~ 169 (176)
||++++.+++.+..|+..+.... ++.|+++|+||+|+.... ...+...+++..+++++++||+++.|++++|.|+++
T Consensus 86 ~D~~~~~s~~~l~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~e~f~~l~~ 165 (210)
T PLN03108 86 YDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAA 165 (210)
T ss_pred EECCcHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHH
Confidence 99999999999989988776543 579999999999997643 234566888888999999999999999999999999
Q ss_pred HHhcC
Q 030504 170 KLAGS 174 (176)
Q Consensus 170 ~i~~~ 174 (176)
.+.++
T Consensus 166 ~~~~~ 170 (210)
T PLN03108 166 KIYKK 170 (210)
T ss_pred HHHHH
Confidence 88654
|
|
| >smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-35 Score=191.77 Aligned_cols=157 Identities=29% Similarity=0.482 Sum_probs=134.9
Q ss_pred EEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccccccccccEEEEEEeC
Q 030504 16 LVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDV 95 (176)
Q Consensus 16 i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~ 95 (176)
|+++|.+|||||||+++|..+.+...+.++.+..+ ......++..+.+.+|||+|++.+..++..+++.+|++++|||+
T Consensus 1 i~i~G~~~vGKTsli~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~ 79 (174)
T smart00174 1 LVVVGDGAVGKTCLLISYTTNAFPEDYVPTVFENY-SADVEVDGKPVELGLWDTAGQEDYDRLRPLSYPDTDVFLICFSV 79 (174)
T ss_pred CEEECCCCCCHHHHHHHHHhCCCCCCCCCcEEeee-eEEEEECCEEEEEEEEECCCCcccchhchhhcCCCCEEEEEEEC
Confidence 68999999999999999999999888888776443 34556677888999999999999999999999999999999999
Q ss_pred CChhhhhhHH-HHHHHHhhhcCCCCEEEEEeCCCCCccc--------------cCHHHHHHHHHcCC-eEEEeccCCCCC
Q 030504 96 TARLTYKNVP-TWHRDLCRVCENIPIVLCGNKVDVKNRQ--------------VKAKQVTFHRKKNL-QYYEISAKSNYN 159 (176)
Q Consensus 96 ~~~~s~~~~~-~~~~~~~~~~~~~p~liv~nK~Dl~~~~--------------~~~~~~~~~~~~~~-~~~~~S~~~~~~ 159 (176)
+++.+++.+. .|+..+....++.|+++|+||+|+.... ...+...+++..+. .+++|||+++.|
T Consensus 80 ~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~ 159 (174)
T smart00174 80 DSPASFENVKEKWYPEVKHFCPNTPIILVGTKLDLREDKSTLRELSKQKQEPVTYEQGEALAKRIGAVKYLECSALTQEG 159 (174)
T ss_pred CCHHHHHHHHHHHHHHHHhhCCCCCEEEEecChhhhhChhhhhhhhcccCCCccHHHHHHHHHHcCCcEEEEecCCCCCC
Confidence 9999999986 5888888777899999999999986521 12334567888886 999999999999
Q ss_pred hHHHHHHHHHHHhc
Q 030504 160 FEKPFLYLARKLAG 173 (176)
Q Consensus 160 v~~~~~~l~~~i~~ 173 (176)
++++|+.+++.+.+
T Consensus 160 v~~lf~~l~~~~~~ 173 (174)
T smart00174 160 VREVFEEAIRAALN 173 (174)
T ss_pred HHHHHHHHHHHhcC
Confidence 99999999998765
|
Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms. |
| >smart00175 RAB Rab subfamily of small GTPases | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.7e-35 Score=189.72 Aligned_cols=161 Identities=33% Similarity=0.681 Sum_probs=142.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccccccccccEEEEEE
Q 030504 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMF 93 (176)
Q Consensus 14 ~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 93 (176)
+||+++|++|||||||++++..+.+...+.++.+.++....+..++..+.+.+||+||++.+...+..+++.+|++++||
T Consensus 1 ~kv~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~ilv~ 80 (164)
T smart00175 1 FKIILIGDSGVGKSSLLSRFTDGKFSEQYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQERFRSITSSYYRGAVGALLVY 80 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhCCCCEEEEEE
Confidence 58999999999999999999988888778888888877777777777889999999999999999999999999999999
Q ss_pred eCCChhhhhhHHHHHHHHhhhc-CCCCEEEEEeCCCCCcc-c-cCHHHHHHHHHcCCeEEEeccCCCCChHHHHHHHHHH
Q 030504 94 DVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNR-Q-VKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARK 170 (176)
Q Consensus 94 d~~~~~s~~~~~~~~~~~~~~~-~~~p~liv~nK~Dl~~~-~-~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l~~~ 170 (176)
|++++.+++.+..|+..+.... ++.|+++++||+|+... . .......+++..+++++++|++++.|++++|+++++.
T Consensus 81 d~~~~~s~~~~~~~l~~~~~~~~~~~pivvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~l~~~i~~~ 160 (164)
T smart00175 81 DITNRESFENLKNWLKELREYADPNVVIMLVGNKSDLEDQRQVSREEAEAFAEEHGLPFFETSAKTNTNVEEAFEELARE 160 (164)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhcccccCCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHH
Confidence 9999999999999998887664 68999999999998763 2 2344567788889999999999999999999999998
Q ss_pred HhcC
Q 030504 171 LAGS 174 (176)
Q Consensus 171 i~~~ 174 (176)
+.++
T Consensus 161 ~~~~ 164 (164)
T smart00175 161 ILKR 164 (164)
T ss_pred HhhC
Confidence 8754
|
Rab GTPases are implicated in vesicle trafficking. |
| >cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-35 Score=189.81 Aligned_cols=159 Identities=32% Similarity=0.569 Sum_probs=135.5
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccccccccccEEEE
Q 030504 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAII 91 (176)
Q Consensus 12 ~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~ 91 (176)
+.+||+++|.+|+|||||+++++.+.+...+.++.+... ......++..+.+.+|||||++++..++..+++.+|++++
T Consensus 1 ~~~ki~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~il 79 (164)
T cd04145 1 PTYKLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDSY-TKQCEIDGQWAILDILDTAGQEEFSAMREQYMRTGEGFLL 79 (164)
T ss_pred CceEEEEECCCCCcHHHHHHHHHhCCCCcccCCCccceE-EEEEEECCEEEEEEEEECCCCcchhHHHHHHHhhCCEEEE
Confidence 358999999999999999999999888777777776333 3345567778899999999999999999999999999999
Q ss_pred EEeCCChhhhhhHHHHHHHHhhhc--CCCCEEEEEeCCCCCcccc--CHHHHHHHHHcCCeEEEeccCCCCChHHHHHHH
Q 030504 92 MFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNRQV--KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYL 167 (176)
Q Consensus 92 v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~liv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l 167 (176)
|||++++.+++.+..|+..+.... .+.|+++++||+|+..+.. ..+...+++..+++++++||++|.|++++|+++
T Consensus 80 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l 159 (164)
T cd04145 80 VFSVTDRGSFEEVDKFHTQILRVKDRDEFPMILVGNKADLEHQRKVSREEGQELARKLKIPYIETSAKDRLNVDKAFHDL 159 (164)
T ss_pred EEECCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEeeCccccccceecHHHHHHHHHHcCCcEEEeeCCCCCCHHHHHHHH
Confidence 999999999999999988876642 5789999999999976432 234557777888999999999999999999999
Q ss_pred HHHH
Q 030504 168 ARKL 171 (176)
Q Consensus 168 ~~~i 171 (176)
++.+
T Consensus 160 ~~~~ 163 (164)
T cd04145 160 VRVI 163 (164)
T ss_pred HHhh
Confidence 8865
|
This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali |
| >smart00173 RAS Ras subfamily of RAS small GTPases | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-35 Score=190.34 Aligned_cols=159 Identities=30% Similarity=0.565 Sum_probs=135.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccccccccccEEEEEE
Q 030504 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMF 93 (176)
Q Consensus 14 ~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 93 (176)
+||+++|++|||||||++++..+.+...+.++.+ +........++..+.+.+|||||++++...+..+++.+|++++||
T Consensus 1 ~ki~v~G~~~~GKTsli~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~ 79 (164)
T smart00173 1 YKLVVLGSGGVGKSALTIQFVQGHFVDDYDPTIE-DSYRKQIEIDGEVCLLDILDTAGQEEFSAMRDQYMRTGEGFLLVY 79 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCCcccCCchh-hhEEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhCCEEEEEE
Confidence 5899999999999999999999888877777765 333445566777889999999999999999999999999999999
Q ss_pred eCCChhhhhhHHHHHHHHhhhc--CCCCEEEEEeCCCCCccc-cC-HHHHHHHHHcCCeEEEeccCCCCChHHHHHHHHH
Q 030504 94 DVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNRQ-VK-AKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLAR 169 (176)
Q Consensus 94 d~~~~~s~~~~~~~~~~~~~~~--~~~p~liv~nK~Dl~~~~-~~-~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l~~ 169 (176)
|++++.+++.+..|+..+.+.. .+.|+++|+||+|+.... .. .+...+++..+.+++++||+++.|++++|+++++
T Consensus 80 d~~~~~s~~~~~~~~~~i~~~~~~~~~pii~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~ 159 (164)
T smart00173 80 SITDRQSFEEIKKFREQILRVKDRDDVPIVLVGNKCDLESERVVSTEEGKELARQWGCPFLETSAKERVNVDEAFYDLVR 159 (164)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceEcHHHHHHHHHHcCCEEEEeecCCCCCHHHHHHHHHH
Confidence 9999999999999888876553 478999999999997533 22 3455777888899999999999999999999998
Q ss_pred HHhc
Q 030504 170 KLAG 173 (176)
Q Consensus 170 ~i~~ 173 (176)
.+..
T Consensus 160 ~~~~ 163 (164)
T smart00173 160 EIRK 163 (164)
T ss_pred HHhh
Confidence 8753
|
Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades |
| >cd01860 Rab5_related Rab5-related subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-34 Score=188.28 Aligned_cols=159 Identities=33% Similarity=0.604 Sum_probs=140.9
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccccccccccEEEEE
Q 030504 13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIM 92 (176)
Q Consensus 13 ~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 92 (176)
++||+++|++++|||||+++++.+.+...+.++.+.++....+..++..+.+.+||+||++++...+..+++++|++++|
T Consensus 1 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v 80 (163)
T cd01860 1 QFKLVLLGDSSVGKSSLVLRFVKNEFSENQESTIGAAFLTQTVNLDDTTVKFEIWDTAGQERYRSLAPMYYRGAAAAIVV 80 (163)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhccCCEEEEE
Confidence 48999999999999999999999998877788888778777888888899999999999999998899999999999999
Q ss_pred EeCCChhhhhhHHHHHHHHhhhc-CCCCEEEEEeCCCCCcc-c-cCHHHHHHHHHcCCeEEEeccCCCCChHHHHHHHHH
Q 030504 93 FDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNR-Q-VKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLAR 169 (176)
Q Consensus 93 ~d~~~~~s~~~~~~~~~~~~~~~-~~~p~liv~nK~Dl~~~-~-~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l~~ 169 (176)
+|++++.+++.+..|+..+.... ++.|+++++||.|+... . ...+...+++..++.++++||++|.|++++|+++++
T Consensus 81 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~ 160 (163)
T cd01860 81 YDITSEESFEKAKSWVKELQRNASPNIIIALVGNKADLESKRQVSTEEAQEYADENGLLFFETSAKTGENVNELFTEIAK 160 (163)
T ss_pred EECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccccCcCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHH
Confidence 99999999999999998887665 67899999999998742 2 333456778888899999999999999999999998
Q ss_pred HH
Q 030504 170 KL 171 (176)
Q Consensus 170 ~i 171 (176)
.+
T Consensus 161 ~l 162 (163)
T cd01860 161 KL 162 (163)
T ss_pred Hh
Confidence 76
|
This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo |
| >cd04101 RabL4 RabL4 (Rab-like4) subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-34 Score=188.49 Aligned_cols=158 Identities=27% Similarity=0.542 Sum_probs=135.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcC--CCCCccccceeEEEeEEEEEec-CcEEEEEEEeCCCccccccccccccccccEEE
Q 030504 14 FKLVIVGDGGTGKTTFVKRHLTG--EFEKKYEPTIGVEVHPLDFFTN-CGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (176)
Q Consensus 14 ~~i~i~G~~~~GKttl~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 90 (176)
+||+++|.+|||||||++++..+ .+...+.++.|.++.......+ +..+.+.+|||+|++.+..++..+++++|+++
T Consensus 1 ~ki~vvG~~~~GKtsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii 80 (164)
T cd04101 1 LRCAVVGDPAVGKTAFVQMFHSNGAVFPKNYLMTTGCDFVVKEVPVDTDNTVELFIFDSAGQELYSDMVSNYWESPSVFI 80 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCccCCCceEEEEEEEEEEeCCCCEEEEEEEECCCHHHHHHHHHHHhCCCCEEE
Confidence 58999999999999999998764 6778888999888776666654 56799999999999999888999999999999
Q ss_pred EEEeCCChhhhhhHHHHHHHHhhhcCCCCEEEEEeCCCCCccc-cCH-HHHHHHHHcCCeEEEeccCCCCChHHHHHHHH
Q 030504 91 IMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQ-VKA-KQVTFHRKKNLQYYEISAKSNYNFEKPFLYLA 168 (176)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~~~~-~~~-~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l~ 168 (176)
+|||++++.+++.+..|+..+....++.|+++|+||+|+.... ... +...+....+++++++||+++.|++++|++++
T Consensus 81 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~ 160 (164)
T cd04101 81 LVYDVSNKASFENCSRWVNKVRTASKHMPGVLVGNKMDLADKAEVTDAQAQAFAQANQLKFFKTSALRGVGYEEPFESLA 160 (164)
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccccccCCCHHHHHHHHHHcCCeEEEEeCCCCCChHHHHHHHH
Confidence 9999999999999999998887766679999999999996543 222 33456667788999999999999999999999
Q ss_pred HHH
Q 030504 169 RKL 171 (176)
Q Consensus 169 ~~i 171 (176)
+.+
T Consensus 161 ~~~ 163 (164)
T cd04101 161 RAF 163 (164)
T ss_pred HHh
Confidence 875
|
RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown. |
| >cd04142 RRP22 RRP22 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-34 Score=192.42 Aligned_cols=162 Identities=20% Similarity=0.295 Sum_probs=131.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccc--------ccccccc
Q 030504 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGL--------RDGYYIH 85 (176)
Q Consensus 14 ~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~--------~~~~~~~ 85 (176)
+||+++|.+|||||||+++|..+.+...+.|+.+.+.....+..++..+.+.+|||||.+.+... ....++.
T Consensus 1 ~kI~ivG~~~vGKTsLi~~~~~~~f~~~~~pt~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~~~~~e~~~~~~~~~~~ 80 (198)
T cd04142 1 VRVAVLGAPGVGKTAIVRQFLAQEFPEEYIPTEHRRLYRPAVVLSGRVYDLHILDVPNMQRYPGTAGQEWMDPRFRGLRN 80 (198)
T ss_pred CEEEEECCCCCcHHHHHHHHHcCCCCcccCCccccccceeEEEECCEEEEEEEEeCCCcccCCccchhHHHHHHHhhhcc
Confidence 58999999999999999999999998888888876665555667778899999999997654321 2234688
Q ss_pred ccEEEEEEeCCChhhhhhHHHHHHHHhhh----cCCCCEEEEEeCCCCCccc-cCHH-HHHHH-HHcCCeEEEeccCCCC
Q 030504 86 GQCAIIMFDVTARLTYKNVPTWHRDLCRV----CENIPIVLCGNKVDVKNRQ-VKAK-QVTFH-RKKNLQYYEISAKSNY 158 (176)
Q Consensus 86 ~~~~i~v~d~~~~~s~~~~~~~~~~~~~~----~~~~p~liv~nK~Dl~~~~-~~~~-~~~~~-~~~~~~~~~~S~~~~~ 158 (176)
+|++++|||++++.+++.+..|+..+... .++.|+++|+||+|+.... ...+ ...++ +..+++|++|||++|.
T Consensus 81 ad~iilv~D~~~~~S~~~~~~~~~~i~~~~~~~~~~~piiivgNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sak~g~ 160 (198)
T cd04142 81 SRAFILVYDICSPDSFHYVKLLRQQILETRPAGNKEPPIVVVGNKRDQQRHRFAPRHVLSVLVRKSWKCGYLECSAKYNW 160 (198)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHhcccCCCCCCEEEEEECccccccccccHHHHHHHHHHhcCCcEEEecCCCCC
Confidence 99999999999999999999998887664 2579999999999996533 2222 33443 3568999999999999
Q ss_pred ChHHHHHHHHHHHhcCC
Q 030504 159 NFEKPFLYLARKLAGST 175 (176)
Q Consensus 159 ~v~~~~~~l~~~i~~~~ 175 (176)
|++++|+.+++.+..+.
T Consensus 161 ~v~~lf~~i~~~~~~~~ 177 (198)
T cd04142 161 HILLLFKELLISATTRG 177 (198)
T ss_pred CHHHHHHHHHHHhhccC
Confidence 99999999999877653
|
RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated. |
| >cd01862 Rab7 Rab7 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-34 Score=189.16 Aligned_cols=161 Identities=30% Similarity=0.622 Sum_probs=138.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccccccccccEEEEEE
Q 030504 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMF 93 (176)
Q Consensus 14 ~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 93 (176)
+||+++|++|||||||++++..+.+...+.++.+.++........+..+.+.+||+||++.+...+..+++++|++++||
T Consensus 1 ~ki~viG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~ 80 (172)
T cd01862 1 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVTVDDKLVTLQIWDTAGQERFQSLGVAFYRGADCCVLVY 80 (172)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCcCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHhHHHHHhcCCCEEEEEE
Confidence 58999999999999999999999988888888887777777777888889999999999999999999999999999999
Q ss_pred eCCChhhhhhHHHHHHHHhhhcC-----CCCEEEEEeCCCCCc-cc-cCHHHHHHHHHcC-CeEEEeccCCCCChHHHHH
Q 030504 94 DVTARLTYKNVPTWHRDLCRVCE-----NIPIVLCGNKVDVKN-RQ-VKAKQVTFHRKKN-LQYYEISAKSNYNFEKPFL 165 (176)
Q Consensus 94 d~~~~~s~~~~~~~~~~~~~~~~-----~~p~liv~nK~Dl~~-~~-~~~~~~~~~~~~~-~~~~~~S~~~~~~v~~~~~ 165 (176)
|++++.+++....|...+..... +.|+++|+||+|+.. .. ...+...+.+..+ .+++++|+++|.|++++|+
T Consensus 81 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~ 160 (172)
T cd01862 81 DVTNPKSFESLDSWRDEFLIQASPSDPENFPFVVLGNKIDLEEKRQVSTKKAQQWCQSNGNIPYFETSAKEAINVEQAFE 160 (172)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCccCCCCceEEEEEECcccccccccCHHHHHHHHHHcCCceEEEEECCCCCCHHHHHH
Confidence 99999999988888877655432 789999999999974 22 2344456666666 7999999999999999999
Q ss_pred HHHHHHhcC
Q 030504 166 YLARKLAGS 174 (176)
Q Consensus 166 ~l~~~i~~~ 174 (176)
++++.+.+.
T Consensus 161 ~i~~~~~~~ 169 (172)
T cd01862 161 TIARKALEQ 169 (172)
T ss_pred HHHHHHHhc
Confidence 999988765
|
Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C- |
| >KOG0091 consensus GTPase Rab39, small G protein superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-36 Score=184.70 Aligned_cols=161 Identities=25% Similarity=0.538 Sum_probs=143.7
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEe-cCcEEEEEEEeCCCccccccccccccccccEEEE
Q 030504 13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFT-NCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAII 91 (176)
Q Consensus 13 ~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~ 91 (176)
.++++++|.+-+|||+|++.|..|++.+-.+||.|+++....+.. ++..+++++|||+|+|+++++.+.||+++-++++
T Consensus 8 qfrlivigdstvgkssll~~ft~gkfaelsdptvgvdffarlie~~pg~riklqlwdtagqerfrsitksyyrnsvgvll 87 (213)
T KOG0091|consen 8 QFRLIVIGDSTVGKSSLLRYFTEGKFAELSDPTVGVDFFARLIELRPGYRIKLQLWDTAGQERFRSITKSYYRNSVGVLL 87 (213)
T ss_pred EEEEEEEcCCcccHHHHHHHHhcCcccccCCCccchHHHHHHHhcCCCcEEEEEEeeccchHHHHHHHHHHhhcccceEE
Confidence 589999999999999999999999999989999999888776655 5778999999999999999999999999999999
Q ss_pred EEeCCChhhhhhHHHHHHHHhhhc--CCCC-EEEEEeCCCCCccc--cCHHHHHHHHHcCCeEEEeccCCCCChHHHHHH
Q 030504 92 MFDVTARLTYKNVPTWHRDLCRVC--ENIP-IVLCGNKVDVKNRQ--VKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLY 166 (176)
Q Consensus 92 v~d~~~~~s~~~~~~~~~~~~~~~--~~~p-~liv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~ 166 (176)
|||++++.+|+.+..|........ |.++ +++|++|+||.... ..++..+++..+|..|+|+|+++|.||+|.|..
T Consensus 88 vyditnr~sfehv~~w~~ea~m~~q~P~k~VFlLVGhKsDL~SqRqVt~EEaEklAa~hgM~FVETSak~g~NVeEAF~m 167 (213)
T KOG0091|consen 88 VYDITNRESFEHVENWVKEAAMATQGPDKVVFLLVGHKSDLQSQRQVTAEEAEKLAASHGMAFVETSAKNGCNVEEAFDM 167 (213)
T ss_pred EEeccchhhHHHHHHHHHHHHHhcCCCCeeEEEEeccccchhhhccccHHHHHHHHHhcCceEEEecccCCCcHHHHHHH
Confidence 999999999999999998776554 4444 68899999998633 345677999999999999999999999999999
Q ss_pred HHHHHhc
Q 030504 167 LARKLAG 173 (176)
Q Consensus 167 l~~~i~~ 173 (176)
+++.+..
T Consensus 168 laqeIf~ 174 (213)
T KOG0091|consen 168 LAQEIFQ 174 (213)
T ss_pred HHHHHHH
Confidence 9998764
|
|
| >KOG0088 consensus GTPase Rab21, small G protein superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-36 Score=184.22 Aligned_cols=165 Identities=27% Similarity=0.468 Sum_probs=149.5
Q ss_pred CCCCeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccccccccccE
Q 030504 9 VDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQC 88 (176)
Q Consensus 9 ~~~~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~ 88 (176)
-+.-.+|++++|+.=+|||+|+.||..++|...+..|....+....+.+++....+.+|||+|+|+|..+-+.||+++++
T Consensus 9 g~s~~FK~VLLGEGCVGKtSLVLRy~EnkFn~kHlsTlQASF~~kk~n~ed~ra~L~IWDTAGQErfHALGPIYYRgSnG 88 (218)
T KOG0088|consen 9 GKSFKFKIVLLGEGCVGKTSLVLRYVENKFNCKHLSTLQASFQNKKVNVEDCRADLHIWDTAGQERFHALGPIYYRGSNG 88 (218)
T ss_pred CCceeeEEEEEcCCccchhHHHHHHHHhhcchhhHHHHHHHHhhcccccccceeeeeeeeccchHhhhccCceEEeCCCc
Confidence 34457999999999999999999999999999888888888888888888899999999999999999999999999999
Q ss_pred EEEEEeCCChhhhhhHHHHHHHHhhhc-CCCCEEEEEeCCCCCccc--cCHHHHHHHHHcCCeEEEeccCCCCChHHHHH
Q 030504 89 AIIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNRQ--VKAKQVTFHRKKNLQYYEISAKSNYNFEKPFL 165 (176)
Q Consensus 89 ~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~liv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~ 165 (176)
+++|||++|+.+|+.+..|...+.... ...-+++|+||.||+.+. ..+++..+++.-|..|+++||+++.|+.++|+
T Consensus 89 alLVyDITDrdSFqKVKnWV~Elr~mlGnei~l~IVGNKiDLEeeR~Vt~qeAe~YAesvGA~y~eTSAk~N~Gi~elFe 168 (218)
T KOG0088|consen 89 ALLVYDITDRDSFQKVKNWVLELRTMLGNEIELLIVGNKIDLEEERQVTRQEAEAYAESVGALYMETSAKDNVGISELFE 168 (218)
T ss_pred eEEEEeccchHHHHHHHHHHHHHHHHhCCeeEEEEecCcccHHHhhhhhHHHHHHHHHhhchhheecccccccCHHHHHH
Confidence 999999999999999999999998876 467789999999998643 34567789999999999999999999999999
Q ss_pred HHHHHHhc
Q 030504 166 YLARKLAG 173 (176)
Q Consensus 166 ~l~~~i~~ 173 (176)
.|.+...|
T Consensus 169 ~Lt~~MiE 176 (218)
T KOG0088|consen 169 SLTAKMIE 176 (218)
T ss_pred HHHHHHHH
Confidence 99887654
|
|
| >cd01861 Rab6 Rab6 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-34 Score=187.25 Aligned_cols=158 Identities=32% Similarity=0.575 Sum_probs=138.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccccccccccEEEEEE
Q 030504 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMF 93 (176)
Q Consensus 14 ~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 93 (176)
+||+++|+++||||||+++++.+.+...+.++.+.++....+..++..+.+.+||+||++.+...+..+++.+|++++||
T Consensus 1 ~ki~liG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~ii~v~ 80 (161)
T cd01861 1 HKLVFLGDQSVGKTSIITRFMYDTFDNQYQATIGIDFLSKTMYLEDKTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVY 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCccCCCceeeeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEEEE
Confidence 58999999999999999999999888888888888888887877777889999999999999999999999999999999
Q ss_pred eCCChhhhhhHHHHHHHHhhhc-CCCCEEEEEeCCCCCc-cccC-HHHHHHHHHcCCeEEEeccCCCCChHHHHHHHHHH
Q 030504 94 DVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKN-RQVK-AKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARK 170 (176)
Q Consensus 94 d~~~~~s~~~~~~~~~~~~~~~-~~~p~liv~nK~Dl~~-~~~~-~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l~~~ 170 (176)
|++++.+++.+..|+..+.... .+.|+++++||.|+.. .... .+...+++..++.++++|++++.|++++|+++++.
T Consensus 81 d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~ 160 (161)
T cd01861 81 DITNRQSFDNTDKWIDDVRDERGNDVIIVLVGNKTDLSDKRQVSTEEGEKKAKELNAMFIETSAKAGHNVKELFRKIASA 160 (161)
T ss_pred ECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEChhccccCccCHHHHHHHHHHhCCEEEEEeCCCCCCHHHHHHHHHHh
Confidence 9999999999999998886654 3699999999999953 3333 34557777788999999999999999999999875
Q ss_pred H
Q 030504 171 L 171 (176)
Q Consensus 171 i 171 (176)
+
T Consensus 161 l 161 (161)
T cd01861 161 L 161 (161)
T ss_pred C
Confidence 3
|
Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate |
| >cd04130 Wrch_1 Wrch-1 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-34 Score=188.16 Aligned_cols=156 Identities=25% Similarity=0.432 Sum_probs=132.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccccccccccEEEEEE
Q 030504 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMF 93 (176)
Q Consensus 14 ~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 93 (176)
+||+++|.+|+|||||++++..+.+...+.++.. +........++..+.+.+||++|++.+...+..+++++|++++||
T Consensus 1 ~k~~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~a~~~i~v~ 79 (173)
T cd04130 1 LKCVLVGDGAVGKTSLIVSYTTNGYPTEYVPTAF-DNFSVVVLVDGKPVRLQLCDTAGQDEFDKLRPLCYPDTDVFLLCF 79 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcee-eeeeEEEEECCEEEEEEEEECCCChhhccccccccCCCcEEEEEE
Confidence 5899999999999999999999999888888763 444456667777889999999999999999999999999999999
Q ss_pred eCCChhhhhhHH-HHHHHHhhhcCCCCEEEEEeCCCCCccc--------------cCHHHHHHHHHcCC-eEEEeccCCC
Q 030504 94 DVTARLTYKNVP-TWHRDLCRVCENIPIVLCGNKVDVKNRQ--------------VKAKQVTFHRKKNL-QYYEISAKSN 157 (176)
Q Consensus 94 d~~~~~s~~~~~-~~~~~~~~~~~~~p~liv~nK~Dl~~~~--------------~~~~~~~~~~~~~~-~~~~~S~~~~ 157 (176)
|++++.+|+.+. .|+..+....++.|+++++||+|+.... ...+...+++..+. .++++||++|
T Consensus 80 d~~~~~sf~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~e~Sa~~~ 159 (173)
T cd04130 80 SVVNPSSFQNISEKWIPEIRKHNPKAPIILVGTQADLRTDVNVLIQLARYGEKPVSQSRAKALAEKIGACEYIECSALTQ 159 (173)
T ss_pred ECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeeChhhccChhHHHHHhhcCCCCcCHHHHHHHHHHhCCCeEEEEeCCCC
Confidence 999999999885 6887777655689999999999986421 22345677888887 8999999999
Q ss_pred CChHHHHHHHHHH
Q 030504 158 YNFEKPFLYLARK 170 (176)
Q Consensus 158 ~~v~~~~~~l~~~ 170 (176)
.|++++|+.++.+
T Consensus 160 ~~v~~lf~~~~~~ 172 (173)
T cd04130 160 KNLKEVFDTAILA 172 (173)
T ss_pred CCHHHHHHHHHhh
Confidence 9999999988753
|
Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus, |
| >cd01863 Rab18 Rab18 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-34 Score=185.94 Aligned_cols=158 Identities=34% Similarity=0.624 Sum_probs=138.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccccccccccEEEEEE
Q 030504 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMF 93 (176)
Q Consensus 14 ~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 93 (176)
+||+++|++|+|||||++++..+.+...+.++.+.++....+......+.+.+||+||++.+...+..+++.+|++++||
T Consensus 1 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~ 80 (161)
T cd01863 1 LKILLIGDSGVGKSSLLLRFTDDTFDPDLAATIGVDFKVKTLTVDGKKVKLAIWDTAGQERFRTLTSSYYRGAQGVILVY 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCcccCCcccceEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhCCCCEEEEEE
Confidence 68999999999999999999988887777888888877776777777889999999999999989999999999999999
Q ss_pred eCCChhhhhhHHHHHHHHhhhc--CCCCEEEEEeCCCCCccc-cCHHHHHHHHHcCCeEEEeccCCCCChHHHHHHHHHH
Q 030504 94 DVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNRQ-VKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARK 170 (176)
Q Consensus 94 d~~~~~s~~~~~~~~~~~~~~~--~~~p~liv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l~~~ 170 (176)
|++++.+++.+..|+..+.... .+.|+++|+||+|+.... ...+...+++..+++++++|+++|.|++++++++++.
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~~~~~ 160 (161)
T cd01863 81 DVTRRDTFTNLETWLNELETYSTNNDIVKMLVGNKIDKENREVTREEGLKFARKHNMLFIETSAKTRDGVQQAFEELVEK 160 (161)
T ss_pred ECCCHHHHHhHHHHHHHHHHhCCCCCCcEEEEEECCcccccccCHHHHHHHHHHcCCEEEEEecCCCCCHHHHHHHHHHh
Confidence 9999999999999988887654 589999999999997433 3445668888889999999999999999999999875
Q ss_pred H
Q 030504 171 L 171 (176)
Q Consensus 171 i 171 (176)
+
T Consensus 161 ~ 161 (161)
T cd01863 161 I 161 (161)
T ss_pred C
Confidence 3
|
Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos |
| >cd01892 Miro2 Miro2 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-34 Score=187.84 Aligned_cols=162 Identities=19% Similarity=0.219 Sum_probs=138.2
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHhcCCCC-CccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccccccccccEE
Q 030504 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFE-KKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCA 89 (176)
Q Consensus 11 ~~~~~i~i~G~~~~GKttl~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~ 89 (176)
.+.+||+++|.+|||||||+++|+.+.+. ..+.||.+.++....+..++..+.+.+||++|++.+...+..++.++|++
T Consensus 2 ~~~~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~~T~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~d~~ 81 (169)
T cd01892 2 RNVFLCFVLGAKGSGKSALLRAFLGRSFSLNAYSPTIKPRYAVNTVEVYGQEKYLILREVGEDEVAILLNDAELAACDVA 81 (169)
T ss_pred CeEEEEEEECCCCCcHHHHHHHHhCCCCCcccCCCccCcceEEEEEEECCeEEEEEEEecCCcccccccchhhhhcCCEE
Confidence 35789999999999999999999999998 88899988777766677777788999999999999999999999999999
Q ss_pred EEEEeCCChhhhhhHHHHHHHHhhhcCCCCEEEEEeCCCCCcccc--CHHHHHHHHHcCC-eEEEeccCCCCChHHHHHH
Q 030504 90 IIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQV--KAKQVTFHRKKNL-QYYEISAKSNYNFEKPFLY 166 (176)
Q Consensus 90 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~~~~~--~~~~~~~~~~~~~-~~~~~S~~~~~~v~~~~~~ 166 (176)
++|||++++.+++.+..|+..+... .+.|+++|+||+|+.+... ..+..++++..++ .++++||+++.|++++|+.
T Consensus 82 llv~d~~~~~s~~~~~~~~~~~~~~-~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~lf~~ 160 (169)
T cd01892 82 CLVYDSSDPKSFSYCAEVYKKYFML-GEIPCLFVAAKADLDEQQQRYEVQPDEFCRKLGLPPPLHFSSKLGDSSNELFTK 160 (169)
T ss_pred EEEEeCCCHHHHHHHHHHHHHhccC-CCCeEEEEEEcccccccccccccCHHHHHHHcCCCCCEEEEeccCccHHHHHHH
Confidence 9999999999999988888765332 4799999999999964322 2334566777776 4799999999999999999
Q ss_pred HHHHHhc
Q 030504 167 LARKLAG 173 (176)
Q Consensus 167 l~~~i~~ 173 (176)
+++.+.+
T Consensus 161 l~~~~~~ 167 (169)
T cd01892 161 LATAAQY 167 (169)
T ss_pred HHHHhhC
Confidence 9998764
|
Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature. |
| >PLN03118 Rab family protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-34 Score=192.10 Aligned_cols=165 Identities=30% Similarity=0.531 Sum_probs=138.9
Q ss_pred CCCeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccccccccccEE
Q 030504 10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCA 89 (176)
Q Consensus 10 ~~~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~ 89 (176)
....+||+++|.+|||||||+++++.+.+ ..+.++.+.++....+..++..+.+.+|||||++++..++..+++.+|++
T Consensus 11 ~~~~~kv~ivG~~~vGKTsli~~l~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~ 89 (211)
T PLN03118 11 YDLSFKILLIGDSGVGKSSLLVSFISSSV-EDLAPTIGVDFKIKQLTVGGKRLKLTIWDTAGQERFRTLTSSYYRNAQGI 89 (211)
T ss_pred cCcceEEEEECcCCCCHHHHHHHHHhCCC-CCcCCCceeEEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhcCCEE
Confidence 34579999999999999999999888776 45678888877777777777888999999999999999999999999999
Q ss_pred EEEEeCCChhhhhhHHH-HHHHHhhhc--CCCCEEEEEeCCCCCcccc--CHHHHHHHHHcCCeEEEeccCCCCChHHHH
Q 030504 90 IIMFDVTARLTYKNVPT-WHRDLCRVC--ENIPIVLCGNKVDVKNRQV--KAKQVTFHRKKNLQYYEISAKSNYNFEKPF 164 (176)
Q Consensus 90 i~v~d~~~~~s~~~~~~-~~~~~~~~~--~~~p~liv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~ 164 (176)
++|||++++.+++.+.. |...+.... .+.|+++|+||+|+..... ..+...++...++.++++||+++.|++++|
T Consensus 90 vlv~D~~~~~sf~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~~~i~~~~~~~~~~~~~~~~~e~SAk~~~~v~~l~ 169 (211)
T PLN03118 90 ILVYDVTRRETFTNLSDVWGKEVELYSTNQDCVKMLVGNKVDRESERDVSREEGMALAKEHGCLFLECSAKTRENVEQCF 169 (211)
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHH
Confidence 99999999999999875 555444332 4679999999999975332 234557777888999999999999999999
Q ss_pred HHHHHHHhcCC
Q 030504 165 LYLARKLAGST 175 (176)
Q Consensus 165 ~~l~~~i~~~~ 175 (176)
++|++.+.+.+
T Consensus 170 ~~l~~~~~~~~ 180 (211)
T PLN03118 170 EELALKIMEVP 180 (211)
T ss_pred HHHHHHHHhhh
Confidence 99999887654
|
|
| >PLN00223 ADP-ribosylation factor; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-34 Score=191.45 Aligned_cols=159 Identities=22% Similarity=0.295 Sum_probs=126.9
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccccccccccEEE
Q 030504 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (176)
Q Consensus 11 ~~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 90 (176)
...+||+++|.++||||||++++..+.+. .+.||.|.+.... +...+.+.+||+||++.++.+|..+++++|++|
T Consensus 15 ~~~~ki~ivG~~~~GKTsl~~~l~~~~~~-~~~pt~g~~~~~~----~~~~~~~~i~D~~Gq~~~~~~~~~~~~~a~~iI 89 (181)
T PLN00223 15 KKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVETV----EYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLI 89 (181)
T ss_pred CCccEEEEECCCCCCHHHHHHHHccCCCc-cccCCcceeEEEE----EECCEEEEEEECCCCHHHHHHHHHHhccCCEEE
Confidence 45689999999999999999999888775 4578887655432 235688999999999999999999999999999
Q ss_pred EEEeCCChhhhhhHHHHHHHHhhh--cCCCCEEEEEeCCCCCccccCHHHHHHHHH-----cCCeEEEeccCCCCChHHH
Q 030504 91 IMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVTFHRK-----KNLQYYEISAKSNYNFEKP 163 (176)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~--~~~~p~liv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~S~~~~~~v~~~ 163 (176)
+|||++++.+++.+..++..+... .++.|+++++||.|+.+.....+......- ..+.++++||++|+|++++
T Consensus 90 ~V~D~s~~~s~~~~~~~l~~~l~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~l~l~~~~~~~~~~~~~Sa~~g~gv~e~ 169 (181)
T PLN00223 90 FVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEG 169 (181)
T ss_pred EEEeCCcHHHHHHHHHHHHHHhcCHhhCCCCEEEEEECCCCCCCCCHHHHHHHhCccccCCCceEEEeccCCCCCCHHHH
Confidence 999999999998888777766432 368999999999999765433232222211 1235678999999999999
Q ss_pred HHHHHHHHhcC
Q 030504 164 FLYLARKLAGS 174 (176)
Q Consensus 164 ~~~l~~~i~~~ 174 (176)
|+||++.+..+
T Consensus 170 ~~~l~~~~~~~ 180 (181)
T PLN00223 170 LDWLSNNIANK 180 (181)
T ss_pred HHHHHHHHhhc
Confidence 99999988764
|
|
| >cd04103 Centaurin_gamma Centaurin gamma | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-34 Score=185.68 Aligned_cols=151 Identities=23% Similarity=0.370 Sum_probs=123.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccccccccccEEEEEE
Q 030504 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMF 93 (176)
Q Consensus 14 ~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 93 (176)
+||+++|++|||||||+.+|+.+.+...+.++.+ .+ ...+.+++..+.+.+|||+|++. ..+++.+|++++||
T Consensus 1 ~ki~vvG~~gvGKTsli~~~~~~~f~~~~~~~~~-~~-~~~i~~~~~~~~l~i~D~~g~~~-----~~~~~~~~~~ilv~ 73 (158)
T cd04103 1 LKLGIVGNLQSGKSALVHRYLTGSYVQLESPEGG-RF-KKEVLVDGQSHLLLIRDEGGAPD-----AQFASWVDAVIFVF 73 (158)
T ss_pred CEEEEECCCCCcHHHHHHHHHhCCCCCCCCCCcc-ce-EEEEEECCEEEEEEEEECCCCCc-----hhHHhcCCEEEEEE
Confidence 5899999999999999999999988776665533 33 34566777888999999999975 34567899999999
Q ss_pred eCCChhhhhhHHHHHHHHhhhc--CCCCEEEEEeCCCCCc---cccCH-HHHHHHHHc-CCeEEEeccCCCCChHHHHHH
Q 030504 94 DVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKN---RQVKA-KQVTFHRKK-NLQYYEISAKSNYNFEKPFLY 166 (176)
Q Consensus 94 d~~~~~s~~~~~~~~~~~~~~~--~~~p~liv~nK~Dl~~---~~~~~-~~~~~~~~~-~~~~~~~S~~~~~~v~~~~~~ 166 (176)
|++++.+|+.+..|+..+.... ++.|+++|+||.|+.. +.... +...++++. ++.|++|||++|.|++++|.+
T Consensus 74 d~~~~~sf~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~~~i~~~f~~ 153 (158)
T cd04103 74 SLENEASFQTVYNLYHQLSSYRNISEIPLILVGTQDAISESNPRVIDDARARQLCADMKRCSYYETCATYGLNVERVFQE 153 (158)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeeHHHhhhcCCcccCHHHHHHHHHHhCCCcEEEEecCCCCCHHHHHHH
Confidence 9999999999999999887654 5789999999999852 22332 345677665 589999999999999999999
Q ss_pred HHHHH
Q 030504 167 LARKL 171 (176)
Q Consensus 167 l~~~i 171 (176)
+++.+
T Consensus 154 ~~~~~ 158 (158)
T cd04103 154 AAQKI 158 (158)
T ss_pred HHhhC
Confidence 98753
|
The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues. |
| >cd04149 Arf6 Arf6 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-34 Score=189.93 Aligned_cols=154 Identities=20% Similarity=0.296 Sum_probs=123.8
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccccccccccEEE
Q 030504 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (176)
Q Consensus 11 ~~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 90 (176)
.+.+||+++|.++||||||++++..+.+. .+.||.|.+..... ...+.+.+|||+|+++++..+..+++++|+++
T Consensus 7 ~~~~kv~i~G~~~~GKTsli~~l~~~~~~-~~~~t~g~~~~~~~----~~~~~~~l~Dt~G~~~~~~~~~~~~~~a~~ii 81 (168)
T cd04149 7 NKEMRILMLGLDAAGKTTILYKLKLGQSV-TTIPTVGFNVETVT----YKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLI 81 (168)
T ss_pred CCccEEEEECcCCCCHHHHHHHHccCCCc-cccCCcccceEEEE----ECCEEEEEEECCCCHHHHHHHHHHhccCCEEE
Confidence 46799999999999999999998877765 35677776654332 25688999999999999999999999999999
Q ss_pred EEEeCCChhhhhhHHHHHHHHhhh--cCCCCEEEEEeCCCCCccccCHHHHHHH-----HHcCCeEEEeccCCCCChHHH
Q 030504 91 IMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVTFH-----RKKNLQYYEISAKSNYNFEKP 163 (176)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~--~~~~p~liv~nK~Dl~~~~~~~~~~~~~-----~~~~~~~~~~S~~~~~~v~~~ 163 (176)
+|||++++.+++.+..|+..+... .++.|+++|+||+|+.+.....+...++ ....+.++++||++|.|++++
T Consensus 82 ~v~D~t~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~SAk~g~gv~~~ 161 (168)
T cd04149 82 FVVDSADRDRIDEARQELHRIINDREMRDALLLVFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEG 161 (168)
T ss_pred EEEeCCchhhHHHHHHHHHHHhcCHhhcCCcEEEEEECcCCccCCCHHHHHHHcCCCccCCCcEEEEEeeCCCCCChHHH
Confidence 999999999998888777666542 3578999999999997643333333332 123457899999999999999
Q ss_pred HHHHHH
Q 030504 164 FLYLAR 169 (176)
Q Consensus 164 ~~~l~~ 169 (176)
|+||.+
T Consensus 162 ~~~l~~ 167 (168)
T cd04149 162 LTWLSS 167 (168)
T ss_pred HHHHhc
Confidence 999975
|
Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t |
| >cd04135 Tc10 TC10 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-33 Score=185.88 Aligned_cols=158 Identities=25% Similarity=0.388 Sum_probs=133.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccccccccccEEEEEE
Q 030504 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMF 93 (176)
Q Consensus 14 ~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 93 (176)
+||+++|++|+|||||+++|..+.+...+.++.+. .....+..++..+.+.+|||+|++.+...+..++..+|++++||
T Consensus 1 ~ki~i~G~~~~GKTsl~~~~~~~~~~~~~~~t~~~-~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~ 79 (174)
T cd04135 1 LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFD-HYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICF 79 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceee-eeEEEEEECCEEEEEEEEeCCCcccccccccccCCCCCEEEEEE
Confidence 58999999999999999999999988777777653 33345667777888999999999999999999999999999999
Q ss_pred eCCChhhhhhHH-HHHHHHhhhcCCCCEEEEEeCCCCCccc-------------c-CHHHHHHHHHcCC-eEEEeccCCC
Q 030504 94 DVTARLTYKNVP-TWHRDLCRVCENIPIVLCGNKVDVKNRQ-------------V-KAKQVTFHRKKNL-QYYEISAKSN 157 (176)
Q Consensus 94 d~~~~~s~~~~~-~~~~~~~~~~~~~p~liv~nK~Dl~~~~-------------~-~~~~~~~~~~~~~-~~~~~S~~~~ 157 (176)
|++++.+++.+. .|+..+....++.|+++|+||.|+.+.. . ..+...+++..++ .+++|||++|
T Consensus 80 ~~~~~~s~~~~~~~~~~~l~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~ 159 (174)
T cd04135 80 SVVNPASFQNVKEEWVPELKEYAPNVPYLLVGTQIDLRDDPKTLARLNDMKEKPVTVEQGQKLAKEIGAHCYVECSALTQ 159 (174)
T ss_pred ECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeEchhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEecCCcC
Confidence 999999999886 5777776656789999999999986432 1 2334567777876 7999999999
Q ss_pred CChHHHHHHHHHHHh
Q 030504 158 YNFEKPFLYLARKLA 172 (176)
Q Consensus 158 ~~v~~~~~~l~~~i~ 172 (176)
.|++++|..+++.+.
T Consensus 160 ~gi~~~f~~~~~~~~ 174 (174)
T cd04135 160 KGLKTVFDEAILAIL 174 (174)
T ss_pred CCHHHHHHHHHHHhC
Confidence 999999999998763
|
TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti |
| >cd04143 Rhes_like Rhes_like subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-34 Score=195.37 Aligned_cols=158 Identities=29% Similarity=0.506 Sum_probs=132.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccccccccccEEEEEE
Q 030504 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMF 93 (176)
Q Consensus 14 ~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 93 (176)
+||+++|.+|||||||+++|+.+.+...+.+|.+ +.....+.+++..+.+.+|||+|++.+..++..++..+|++|+||
T Consensus 1 ~KVvvlG~~gvGKTSLi~r~~~~~f~~~y~pTi~-d~~~k~~~i~~~~~~l~I~Dt~G~~~~~~~~~~~~~~ad~iIlVf 79 (247)
T cd04143 1 YRMVVLGASKVGKTAIVSRFLGGRFEEQYTPTIE-DFHRKLYSIRGEVYQLDILDTSGNHPFPAMRRLSILTGDVFILVF 79 (247)
T ss_pred CEEEEECcCCCCHHHHHHHHHcCCCCCCCCCChh-HhEEEEEEECCEEEEEEEEECCCChhhhHHHHHHhccCCEEEEEE
Confidence 5899999999999999999999999888888886 555566677888899999999999999888888889999999999
Q ss_pred eCCChhhhhhHHHHHHHHhhh----------cCCCCEEEEEeCCCCCc-cccCH-HHHHHHH-HcCCeEEEeccCCCCCh
Q 030504 94 DVTARLTYKNVPTWHRDLCRV----------CENIPIVLCGNKVDVKN-RQVKA-KQVTFHR-KKNLQYYEISAKSNYNF 160 (176)
Q Consensus 94 d~~~~~s~~~~~~~~~~~~~~----------~~~~p~liv~nK~Dl~~-~~~~~-~~~~~~~-~~~~~~~~~S~~~~~~v 160 (176)
|++++.+|+.+..|+..+... ..+.|+++|+||+|+.. +.... +..+++. ..++.++++||++|.|+
T Consensus 80 dv~~~~Sf~~i~~~~~~I~~~k~~~~~~~~~~~~~piIivgNK~Dl~~~~~v~~~ei~~~~~~~~~~~~~evSAktg~gI 159 (247)
T cd04143 80 SLDNRESFEEVCRLREQILETKSCLKNKTKENVKIPMVICGNKADRDFPREVQRDEVEQLVGGDENCAYFEVSAKKNSNL 159 (247)
T ss_pred eCCCHHHHHHHHHHHHHHHHhhcccccccccCCCCcEEEEEECccchhccccCHHHHHHHHHhcCCCEEEEEeCCCCCCH
Confidence 999999999999888887643 24789999999999975 33332 3334443 24688999999999999
Q ss_pred HHHHHHHHHHHh
Q 030504 161 EKPFLYLARKLA 172 (176)
Q Consensus 161 ~~~~~~l~~~i~ 172 (176)
+++|.+|+....
T Consensus 160 ~elf~~L~~~~~ 171 (247)
T cd04143 160 DEMFRALFSLAK 171 (247)
T ss_pred HHHHHHHHHHhc
Confidence 999999998653
|
This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l |
| >cd04158 ARD1 ARD1 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-34 Score=186.98 Aligned_cols=156 Identities=22% Similarity=0.352 Sum_probs=126.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccccccccccEEEEEEe
Q 030504 15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFD 94 (176)
Q Consensus 15 ~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d 94 (176)
||+++|.++||||||++++..+.+.. +.+|.|...... +...+.+.+|||||++.+...+..+++.+|++++|+|
T Consensus 1 ~vvlvG~~~~GKTsl~~~l~~~~~~~-~~~T~~~~~~~~----~~~~~~i~l~Dt~G~~~~~~~~~~~~~~ad~ii~V~D 75 (169)
T cd04158 1 RVVTLGLDGAGKTTILFKLKQDEFMQ-PIPTIGFNVETV----EYKNLKFTIWDVGGKHKLRPLWKHYYLNTQAVVFVVD 75 (169)
T ss_pred CEEEECCCCCCHHHHHHHHhcCCCCC-cCCcCceeEEEE----EECCEEEEEEECCCChhcchHHHHHhccCCEEEEEEe
Confidence 68999999999999999988886654 677777555432 2356789999999999999999999999999999999
Q ss_pred CCChhhhhhHHHHHHHHhhh--cCCCCEEEEEeCCCCCccccCHHHHHHHHHc------CCeEEEeccCCCCChHHHHHH
Q 030504 95 VTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVTFHRKK------NLQYYEISAKSNYNFEKPFLY 166 (176)
Q Consensus 95 ~~~~~s~~~~~~~~~~~~~~--~~~~p~liv~nK~Dl~~~~~~~~~~~~~~~~------~~~~~~~S~~~~~~v~~~~~~ 166 (176)
++++.++..+..|+..+... ..+.|+++|+||+|+.+.....+...++... .+.+++|||++|.|++++|+|
T Consensus 76 ~s~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~~f~~ 155 (169)
T cd04158 76 SSHRDRVSEAHSELAKLLTEKELRDALLLIFANKQDVAGALSVEEMTELLSLHKLCCGRSWYIQGCDARSGMGLYEGLDW 155 (169)
T ss_pred CCcHHHHHHHHHHHHHHhcChhhCCCCEEEEEeCcCcccCCCHHHHHHHhCCccccCCCcEEEEeCcCCCCCCHHHHHHH
Confidence 99999999998888877643 2468999999999997654444444444322 236889999999999999999
Q ss_pred HHHHHhcCC
Q 030504 167 LARKLAGST 175 (176)
Q Consensus 167 l~~~i~~~~ 175 (176)
|++.+.+.+
T Consensus 156 l~~~~~~~~ 164 (169)
T cd04158 156 LSRQLVAAG 164 (169)
T ss_pred HHHHHhhcc
Confidence 999887764
|
ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra |
| >cd04177 RSR1 RSR1 subgroup | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-33 Score=184.28 Aligned_cols=159 Identities=26% Similarity=0.521 Sum_probs=135.4
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccccccccccEEEEE
Q 030504 13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIM 92 (176)
Q Consensus 13 ~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 92 (176)
++||+++|.+|||||||++++..+.+...+.++.+.. .......++..+.+.+|||||++.+..+++.+++.++++++|
T Consensus 1 ~~ki~liG~~~~GKTsli~~~~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~vlv 79 (168)
T cd04177 1 DYKIVVLGAGGVGKSALTVQFVQNVFIESYDPTIEDS-YRKQVEIDGRQCDLEILDTAGTEQFTAMRELYIKSGQGFLLV 79 (168)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchhe-EEEEEEECCEEEEEEEEeCCCcccchhhhHHHHhhCCEEEEE
Confidence 4799999999999999999999999888788887643 345556677788999999999999999999999999999999
Q ss_pred EeCCChhhhhhHHHHHHHHhhhc--CCCCEEEEEeCCCCCcccc--CHHHHHHHHHcC-CeEEEeccCCCCChHHHHHHH
Q 030504 93 FDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNRQV--KAKQVTFHRKKN-LQYYEISAKSNYNFEKPFLYL 167 (176)
Q Consensus 93 ~d~~~~~s~~~~~~~~~~~~~~~--~~~p~liv~nK~Dl~~~~~--~~~~~~~~~~~~-~~~~~~S~~~~~~v~~~~~~l 167 (176)
||++++.+++.+..|...+.... .+.|+++++||.|+..... ..+...+++..+ ++++++||+++.|+.++|+++
T Consensus 80 ~~~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~~i~~~f~~i 159 (168)
T cd04177 80 YSVTSEASLNELGELREQVLRIKDSDNVPMVLVGNKADLEDDRQVSREDGVSLSQQWGNVPFYETSARKRTNVDEVFIDL 159 (168)
T ss_pred EECCCHHHHHHHHHHHHHHHHhhCCCCCCEEEEEEChhccccCccCHHHHHHHHHHcCCceEEEeeCCCCCCHHHHHHHH
Confidence 99999999999998888876542 5799999999999975332 233456667777 789999999999999999999
Q ss_pred HHHHh
Q 030504 168 ARKLA 172 (176)
Q Consensus 168 ~~~i~ 172 (176)
++.+.
T Consensus 160 ~~~~~ 164 (168)
T cd04177 160 VRQII 164 (168)
T ss_pred HHHHh
Confidence 98764
|
RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu |
| >cd04123 Rab21 Rab21 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-33 Score=182.64 Aligned_cols=158 Identities=32% Similarity=0.583 Sum_probs=135.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccccccccccEEEEEE
Q 030504 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMF 93 (176)
Q Consensus 14 ~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 93 (176)
+||+++|++|+|||||++++..+.+...+.++.+.+.........+..+.+.+||++|++.+...+..+++.+|++++||
T Consensus 1 ~ki~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 80 (162)
T cd04123 1 FKVVLLGEGRVGKTSLVLRYVENKFNEKHESTTQASFFQKTVNIGGKRIDLAIWDTAGQERYHALGPIYYRDADGAILVY 80 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCccceeEEEEEEEECCEEEEEEEEECCchHHHHHhhHHHhccCCEEEEEE
Confidence 58999999999999999999998887766667666666666666677789999999999999999999999999999999
Q ss_pred eCCChhhhhhHHHHHHHHhhhc-CCCCEEEEEeCCCCCccc-c-CHHHHHHHHHcCCeEEEeccCCCCChHHHHHHHHHH
Q 030504 94 DVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNRQ-V-KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARK 170 (176)
Q Consensus 94 d~~~~~s~~~~~~~~~~~~~~~-~~~p~liv~nK~Dl~~~~-~-~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l~~~ 170 (176)
|++++.+++.+..|+..+.... .+.|+++++||+|+.... . ..+..++++..+++++++|++++.|++++|+|+++.
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~gi~~~~~~l~~~ 160 (162)
T cd04123 81 DITDADSFQKVKKWIKELKQMRGNNISLVIVGNKIDLERQRVVSKSEAEEYAKSVGAKHFETSAKTGKGIEELFLSLAKR 160 (162)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHH
Confidence 9999999999999988887664 378999999999997532 2 234456777889999999999999999999999887
Q ss_pred H
Q 030504 171 L 171 (176)
Q Consensus 171 i 171 (176)
+
T Consensus 161 ~ 161 (162)
T cd04123 161 M 161 (162)
T ss_pred h
Confidence 5
|
The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site |
| >smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-34 Score=186.82 Aligned_cols=157 Identities=24% Similarity=0.339 Sum_probs=125.5
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccccccccccEEE
Q 030504 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (176)
Q Consensus 11 ~~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 90 (176)
...+||+++|.+|||||||++++..+.+. .+.||.|.+...... ..+.+.+||++|++.+...+..+++++|++|
T Consensus 11 ~~~~ki~l~G~~~~GKTsL~~~~~~~~~~-~~~~t~~~~~~~~~~----~~~~l~l~D~~G~~~~~~~~~~~~~~ad~ii 85 (175)
T smart00177 11 NKEMRILMVGLDAAGKTTILYKLKLGESV-TTIPTIGFNVETVTY----KNISFTVWDVGGQDKIRPLWRHYYTNTQGLI 85 (175)
T ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCCC-CcCCccccceEEEEE----CCEEEEEEECCCChhhHHHHHHHhCCCCEEE
Confidence 45699999999999999999999888875 467788766543332 5678999999999999999999999999999
Q ss_pred EEEeCCChhhhhhHHHHHHHHhhh--cCCCCEEEEEeCCCCCccccCHHHHHHH-----HHcCCeEEEeccCCCCChHHH
Q 030504 91 IMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVTFH-----RKKNLQYYEISAKSNYNFEKP 163 (176)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~--~~~~p~liv~nK~Dl~~~~~~~~~~~~~-----~~~~~~~~~~S~~~~~~v~~~ 163 (176)
+|||++++.+++....|+..+... .++.|+++|+||+|+.+.....+..... +...+.++++||++|.|++++
T Consensus 86 ~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gv~e~ 165 (175)
T smart00177 86 FVVDSNDRDRIDEAREELHRMLNEDELRDAVILVFANKQDLPDAMKAAEITEKLGLHSIRDRNWYIQPTCATSGDGLYEG 165 (175)
T ss_pred EEEECCCHHHHHHHHHHHHHHhhCHhhcCCcEEEEEeCcCcccCCCHHHHHHHhCccccCCCcEEEEEeeCCCCCCHHHH
Confidence 999999999999888877766432 3578999999999997643322222211 223456789999999999999
Q ss_pred HHHHHHHHh
Q 030504 164 FLYLARKLA 172 (176)
Q Consensus 164 ~~~l~~~i~ 172 (176)
|+||...+.
T Consensus 166 ~~~l~~~~~ 174 (175)
T smart00177 166 LTWLSNNLK 174 (175)
T ss_pred HHHHHHHhc
Confidence 999988753
|
Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop). |
| >cd04146 RERG_RasL11_like RERG/RasL11-like subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.7e-34 Score=185.24 Aligned_cols=157 Identities=22% Similarity=0.390 Sum_probs=130.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCcccc-ccccccccccccEEEEEE
Q 030504 15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKF-GGLRDGYYIHGQCAIIMF 93 (176)
Q Consensus 15 ~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~-~~~~~~~~~~~~~~i~v~ 93 (176)
||+++|++|+|||||+++++.+.+...+.++.+... ......++..+.+.+||+||++.+ ......+++.+|++++||
T Consensus 1 ki~vvG~~~~GKtsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~v~ 79 (165)
T cd04146 1 KIAVLGASGVGKSALVVRFLTKRFIGEYDPNLESLY-SRQVTIDGEQVSLEILDTAGQQQADTEQLERSIRWADGFVLVY 79 (165)
T ss_pred CEEEECCCCCcHHHHHHHHHhCccccccCCChHHhc-eEEEEECCEEEEEEEEECCCCcccccchHHHHHHhCCEEEEEE
Confidence 689999999999999999998888777777664333 444566778889999999999853 445677889999999999
Q ss_pred eCCChhhhhhHHHHHHHHhhhc---CCCCEEEEEeCCCCCcc-cc-CHHHHHHHHHcCCeEEEeccCCC-CChHHHHHHH
Q 030504 94 DVTARLTYKNVPTWHRDLCRVC---ENIPIVLCGNKVDVKNR-QV-KAKQVTFHRKKNLQYYEISAKSN-YNFEKPFLYL 167 (176)
Q Consensus 94 d~~~~~s~~~~~~~~~~~~~~~---~~~p~liv~nK~Dl~~~-~~-~~~~~~~~~~~~~~~~~~S~~~~-~~v~~~~~~l 167 (176)
|++++.+++.+..|+..+.... .+.|+++|+||+|+... .. ..+...+++..+++|+++||+++ .|++++|.++
T Consensus 80 d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~~v~~~f~~l 159 (165)
T cd04146 80 SITDRSSFDEISQLKQLIREIKKRDREIPVILVGNKADLLHYRQVSTEEGEKLASELGCLFFEVSAAEDYDGVHSVFHEL 159 (165)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCchHHhCccCHHHHHHHHHHcCCEEEEeCCCCCchhHHHHHHHH
Confidence 9999999999999888777653 48999999999998643 22 33456788888999999999999 5999999999
Q ss_pred HHHHh
Q 030504 168 ARKLA 172 (176)
Q Consensus 168 ~~~i~ 172 (176)
++.+.
T Consensus 160 ~~~~~ 164 (165)
T cd04146 160 CREVR 164 (165)
T ss_pred HHHHh
Confidence 98775
|
RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu |
| >cd04148 RGK RGK subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-33 Score=190.82 Aligned_cols=158 Identities=20% Similarity=0.320 Sum_probs=131.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCC-CccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccccccc-cccEEEE
Q 030504 14 FKLVIVGDGGTGKTTFVKRHLTGEFE-KKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYI-HGQCAII 91 (176)
Q Consensus 14 ~~i~i~G~~~~GKttl~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~-~~~~~i~ 91 (176)
+||+++|.+|||||||+++|..+.+. ..+.++.+.+.....+.+++..+.+.+|||+|++ ......++. .+|++++
T Consensus 1 ~KI~lvG~~gvGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~~--~~~~~~~~~~~ad~iil 78 (221)
T cd04148 1 YRVVMLGSPGVGKSSLASQFTSGEYDDHAYDASGDDDTYERTVSVDGEESTLVVIDHWEQE--MWTEDSCMQYQGDAFVV 78 (221)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCcCccCcCCCccccceEEEEEECCEEEEEEEEeCCCcc--hHHHhHHhhcCCCEEEE
Confidence 58999999999999999999888886 6667776656666667777788999999999998 233444556 8999999
Q ss_pred EEeCCChhhhhhHHHHHHHHhhhc--CCCCEEEEEeCCCCCccc-c-CHHHHHHHHHcCCeEEEeccCCCCChHHHHHHH
Q 030504 92 MFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNRQ-V-KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYL 167 (176)
Q Consensus 92 v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~liv~nK~Dl~~~~-~-~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l 167 (176)
|||++++.+++.+..|+..+.... .+.|+++|+||+|+.... . ..+...++...+++++++||+++.|++++|+++
T Consensus 79 V~d~td~~S~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~SA~~~~gv~~l~~~l 158 (221)
T cd04148 79 VYSVTDRSSFERASELRIQLRRNRQLEDRPIILVGNKSDLARSREVSVQEGRACAVVFDCKFIETSAGLQHNVDELLEGI 158 (221)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhccccceecHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHH
Confidence 999999999999999988887653 579999999999996533 2 233457777788999999999999999999999
Q ss_pred HHHHhc
Q 030504 168 ARKLAG 173 (176)
Q Consensus 168 ~~~i~~ 173 (176)
++.+..
T Consensus 159 ~~~~~~ 164 (221)
T cd04148 159 VRQIRL 164 (221)
T ss_pred HHHHHh
Confidence 998863
|
The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra |
| >KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-36 Score=184.21 Aligned_cols=161 Identities=32% Similarity=0.602 Sum_probs=144.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEec---------CcEEEEEEEeCCCccccccccccccc
Q 030504 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTN---------CGKIRFYCWDTAGQEKFGGLRDGYYI 84 (176)
Q Consensus 14 ~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~D~~g~~~~~~~~~~~~~ 84 (176)
+|.+.+|.+|+||||++.++..|+|......|.|+++..+.+-+. ...+.+++|||+|+|+++++.-++++
T Consensus 10 ikfLaLGDSGVGKTs~Ly~YTD~~F~~qFIsTVGIDFreKrvvY~s~gp~g~gr~~rihLQlWDTAGQERFRSLTTAFfR 89 (219)
T KOG0081|consen 10 IKFLALGDSGVGKTSFLYQYTDGKFNTQFISTVGIDFREKRVVYNSSGPGGGGRGQRIHLQLWDTAGQERFRSLTTAFFR 89 (219)
T ss_pred HHHHhhccCCCCceEEEEEecCCcccceeEEEeecccccceEEEeccCCCCCCcceEEEEeeeccccHHHHHHHHHHHHH
Confidence 578899999999999999999999999999999999988876442 24588999999999999999999999
Q ss_pred cccEEEEEEeCCChhhhhhHHHHHHHHhhh--cCCCCEEEEEeCCCCCccccCH--HHHHHHHHcCCeEEEeccCCCCCh
Q 030504 85 HGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKA--KQVTFHRKKNLQYYEISAKSNYNF 160 (176)
Q Consensus 85 ~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~--~~~~p~liv~nK~Dl~~~~~~~--~~~~~~~~~~~~~~~~S~~~~~~v 160 (176)
.+-+++++||+++..||-++..|+.++... +.+..+++++||+||++..... ++.+++.++++||||+||.+|.||
T Consensus 90 DAMGFlLiFDlT~eqSFLnvrnWlSQL~~hAYcE~PDivlcGNK~DL~~~R~Vs~~qa~~La~kyglPYfETSA~tg~Nv 169 (219)
T KOG0081|consen 90 DAMGFLLIFDLTSEQSFLNVRNWLSQLQTHAYCENPDIVLCGNKADLEDQRVVSEDQAAALADKYGLPYFETSACTGTNV 169 (219)
T ss_pred hhccceEEEeccchHHHHHHHHHHHHHHHhhccCCCCEEEEcCccchhhhhhhhHHHHHHHHHHhCCCeeeeccccCcCH
Confidence 999999999999999999999999988755 4788899999999999865544 356899999999999999999999
Q ss_pred HHHHHHHHHHHhcC
Q 030504 161 EKPFLYLARKLAGS 174 (176)
Q Consensus 161 ~~~~~~l~~~i~~~ 174 (176)
++..+-++..++++
T Consensus 170 ~kave~LldlvM~R 183 (219)
T KOG0081|consen 170 EKAVELLLDLVMKR 183 (219)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999998887664
|
|
| >PTZ00133 ADP-ribosylation factor; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-33 Score=187.40 Aligned_cols=159 Identities=21% Similarity=0.316 Sum_probs=125.7
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccccccccccEEE
Q 030504 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (176)
Q Consensus 11 ~~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 90 (176)
...+||+++|+++||||||++++..+.+.. +.||.+.+.... +...+.+.+|||+|+++++..+..+++++|++|
T Consensus 15 ~~~~kv~lvG~~~vGKTsli~~~~~~~~~~-~~~T~~~~~~~~----~~~~~~~~l~D~~G~~~~~~~~~~~~~~ad~iI 89 (182)
T PTZ00133 15 KKEVRILMVGLDAAGKTTILYKLKLGEVVT-TIPTIGFNVETV----EYKNLKFTMWDVGGQDKLRPLWRHYYQNTNGLI 89 (182)
T ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCccccceEEE----EECCEEEEEEECCCCHhHHHHHHHHhcCCCEEE
Confidence 456999999999999999999998888764 567877655432 225678999999999999999999999999999
Q ss_pred EEEeCCChhhhhhHHHHHHHHhhh--cCCCCEEEEEeCCCCCccccCHHHHHH-----HHHcCCeEEEeccCCCCChHHH
Q 030504 91 IMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVTF-----HRKKNLQYYEISAKSNYNFEKP 163 (176)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~--~~~~p~liv~nK~Dl~~~~~~~~~~~~-----~~~~~~~~~~~S~~~~~~v~~~ 163 (176)
+|+|++++.+++....++..+... ..+.|+++|+||.|+.+.....+.... ++...+.++++||++|.|++++
T Consensus 90 ~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~l~~~~~~~~~~~~~~~Sa~tg~gv~e~ 169 (182)
T PTZ00133 90 FVVDSNDRERIGDAREELERMLSEDELRDAVLLVFANKQDLPNAMSTTEVTEKLGLHSVRQRNWYIQGCCATTAQGLYEG 169 (182)
T ss_pred EEEeCCCHHHHHHHHHHHHHHHhCHhhcCCCEEEEEeCCCCCCCCCHHHHHHHhCCCcccCCcEEEEeeeCCCCCCHHHH
Confidence 999999999998888766665432 357899999999999754332222211 1122346779999999999999
Q ss_pred HHHHHHHHhcC
Q 030504 164 FLYLARKLAGS 174 (176)
Q Consensus 164 ~~~l~~~i~~~ 174 (176)
|+||++.+.++
T Consensus 170 ~~~l~~~i~~~ 180 (182)
T PTZ00133 170 LDWLSANIKKS 180 (182)
T ss_pred HHHHHHHHHHh
Confidence 99999988754
|
|
| >cd04150 Arf1_5_like Arf1-Arf5-like subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-34 Score=184.54 Aligned_cols=151 Identities=24% Similarity=0.340 Sum_probs=120.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccccccccccEEEEEE
Q 030504 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMF 93 (176)
Q Consensus 14 ~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 93 (176)
+||+++|.++||||||++++..+.+. .+.|+.|....... ...+.+.+||++|++++...+..+++++|++++||
T Consensus 1 ~kv~~~G~~~~GKTsli~~l~~~~~~-~~~pt~g~~~~~~~----~~~~~~~l~D~~G~~~~~~~~~~~~~~ad~~i~v~ 75 (159)
T cd04150 1 MRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVETVE----YKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 75 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCc-ccCCCCCcceEEEE----ECCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEE
Confidence 48999999999999999999888886 46778776553322 25688999999999999999999999999999999
Q ss_pred eCCChhhhhhHHHHHHHHhhh--cCCCCEEEEEeCCCCCccccCHHHHHHH-----HHcCCeEEEeccCCCCChHHHHHH
Q 030504 94 DVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVTFH-----RKKNLQYYEISAKSNYNFEKPFLY 166 (176)
Q Consensus 94 d~~~~~s~~~~~~~~~~~~~~--~~~~p~liv~nK~Dl~~~~~~~~~~~~~-----~~~~~~~~~~S~~~~~~v~~~~~~ 166 (176)
|++++.+++.+..|+..+... ..+.|+++++||+|+.+.....+..... ....+.++++||++|.|++++|+|
T Consensus 76 D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sak~g~gv~~~~~~ 155 (159)
T cd04150 76 DSNDRERIGEAREELQRMLNEDELRDAVLLVFANKQDLPNAMSAAEVTDKLGLHSLRNRNWYIQATCATSGDGLYEGLDW 155 (159)
T ss_pred eCCCHHHHHHHHHHHHHHHhcHHhcCCCEEEEEECCCCCCCCCHHHHHHHhCccccCCCCEEEEEeeCCCCCCHHHHHHH
Confidence 999999999888877666432 3578999999999997543322222211 123456889999999999999999
Q ss_pred HHH
Q 030504 167 LAR 169 (176)
Q Consensus 167 l~~ 169 (176)
|.+
T Consensus 156 l~~ 158 (159)
T cd04150 156 LSN 158 (159)
T ss_pred Hhc
Confidence 864
|
This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents |
| >cd01870 RhoA_like RhoA-like subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-33 Score=183.03 Aligned_cols=157 Identities=31% Similarity=0.512 Sum_probs=131.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccccccccccEEEEEE
Q 030504 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMF 93 (176)
Q Consensus 14 ~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 93 (176)
.||+++|++|||||||+++|..+.+...+.++.+.... ..+..++..+.+.+|||+|++.+...+..++.++|++++||
T Consensus 2 ~ki~iiG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 80 (175)
T cd01870 2 KKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYV-ADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCF 80 (175)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccceE-EEEEECCEEEEEEEEeCCCchhhhhccccccCCCCEEEEEE
Confidence 58999999999999999999999998888888764443 34566778889999999999999888888899999999999
Q ss_pred eCCChhhhhhHH-HHHHHHhhhcCCCCEEEEEeCCCCCcccc--------------CHHHHHHHHHcC-CeEEEeccCCC
Q 030504 94 DVTARLTYKNVP-TWHRDLCRVCENIPIVLCGNKVDVKNRQV--------------KAKQVTFHRKKN-LQYYEISAKSN 157 (176)
Q Consensus 94 d~~~~~s~~~~~-~~~~~~~~~~~~~p~liv~nK~Dl~~~~~--------------~~~~~~~~~~~~-~~~~~~S~~~~ 157 (176)
|++++.+++.+. .|...+.+..++.|+++|+||+|+..... ..+..++++..+ ..+++|||++|
T Consensus 81 ~~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~i~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~ 160 (175)
T cd01870 81 SIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANKIGAFGYMECSAKTK 160 (175)
T ss_pred ECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeeChhcccChhhhhhhhhccCCCccHHHHHHHHHHcCCcEEEEeccccC
Confidence 999999998885 57777776667899999999999864321 123445666666 48999999999
Q ss_pred CChHHHHHHHHHHH
Q 030504 158 YNFEKPFLYLARKL 171 (176)
Q Consensus 158 ~~v~~~~~~l~~~i 171 (176)
.|++++|.++++.+
T Consensus 161 ~~v~~lf~~l~~~~ 174 (175)
T cd01870 161 EGVREVFEMATRAA 174 (175)
T ss_pred cCHHHHHHHHHHHh
Confidence 99999999998764
|
The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl |
| >cd00154 Rab Rab family | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-33 Score=180.06 Aligned_cols=156 Identities=36% Similarity=0.712 Sum_probs=138.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccccccccccEEEEEE
Q 030504 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMF 93 (176)
Q Consensus 14 ~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 93 (176)
+||+++|+++||||||++++..+.+...+.++.+.++.......+...+.+.+||+||++.+...+..+++++|++++|+
T Consensus 1 ~~i~~~G~~~~GKStl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ii~v~ 80 (159)
T cd00154 1 FKIVLIGDSGVGKTSLLLRFVDGKFDENYKSTIGVDFKSKTIEIDGKTVKLQIWDTAGQERFRSITPSYYRGAHGAILVY 80 (159)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCccCCceeeeeEEEEEEECCEEEEEEEEecCChHHHHHHHHHHhcCCCEEEEEE
Confidence 58999999999999999999999988888889888888888888888899999999999999899999999999999999
Q ss_pred eCCChhhhhhHHHHHHHHhhhc-CCCCEEEEEeCCCCC--ccccCHHHHHHHHHcCCeEEEeccCCCCChHHHHHHHHH
Q 030504 94 DVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVK--NRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLAR 169 (176)
Q Consensus 94 d~~~~~s~~~~~~~~~~~~~~~-~~~p~liv~nK~Dl~--~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l~~ 169 (176)
|++++.+++.+..|+..+.... ++.|+++++||+|+. ......+...++...+++++++|++++.|++++|++|++
T Consensus 81 d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~i~~ 159 (159)
T cd00154 81 DITNRESFENLDKWLKELKEYAPENIPIILVGNKIDLEDQRQVSTEEAQQFAKENGLLFFETSAKTGENVEELFQSLAE 159 (159)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEcccccccccccHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHhC
Confidence 9999999999999998887775 679999999999996 333444556777778999999999999999999999863
|
Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di |
| >cd04139 RalA_RalB RalA/RalB subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-32 Score=180.14 Aligned_cols=159 Identities=30% Similarity=0.557 Sum_probs=135.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccccccccccEEEEEE
Q 030504 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMF 93 (176)
Q Consensus 14 ~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 93 (176)
+||+++|.+|||||||++++..+.+...+.++.+... ......++..+.+.+||+||++.+...+..+++.++++++|+
T Consensus 1 ~ki~~~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~ 79 (164)
T cd04139 1 YKVIVVGAGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEDVQLNILDTAGQEDYAAIRDNYHRSGEGFLLVF 79 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCccccCCcchhhE-EEEEEECCEEEEEEEEECCChhhhhHHHHHHhhcCCEEEEEE
Confidence 5899999999999999999999888777777765333 344556778889999999999999999999999999999999
Q ss_pred eCCChhhhhhHHHHHHHHhhhc--CCCCEEEEEeCCCCCc-c-ccCHHHHHHHHHcCCeEEEeccCCCCChHHHHHHHHH
Q 030504 94 DVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKN-R-QVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLAR 169 (176)
Q Consensus 94 d~~~~~s~~~~~~~~~~~~~~~--~~~p~liv~nK~Dl~~-~-~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l~~ 169 (176)
|++++.+++.+..|+..+.... .+.|+++|+||+|+.. . ....+...+....+++++++||+++.|++++|+++++
T Consensus 80 d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~ 159 (164)
T cd04139 80 SITDMESFTATAEFREQILRVKDDDNVPLLLVGNKCDLEDKRQVSSEEAANLARQWGVPYVETSAKTRQNVEKAFYDLVR 159 (164)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEccccccccccCHHHHHHHHHHhCCeEEEeeCCCCCCHHHHHHHHHH
Confidence 9999999999998888887653 5899999999999976 2 2333445777778899999999999999999999998
Q ss_pred HHhc
Q 030504 170 KLAG 173 (176)
Q Consensus 170 ~i~~ 173 (176)
.+.+
T Consensus 160 ~~~~ 163 (164)
T cd04139 160 EIRQ 163 (164)
T ss_pred HHHh
Confidence 8765
|
The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo |
| >KOG0097 consensus GTPase Rab14, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-34 Score=172.20 Aligned_cols=164 Identities=32% Similarity=0.531 Sum_probs=149.7
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccccccccccEEEE
Q 030504 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAII 91 (176)
Q Consensus 12 ~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~ 91 (176)
-.+|.+++|.-|+|||+|+.+|...+|-..-.+++|+++....+.+.+..+++++|||+|+++++...+.+++++.+.++
T Consensus 10 yifkyiiigdmgvgkscllhqftekkfmadcphtigvefgtriievsgqkiklqiwdtagqerfravtrsyyrgaagalm 89 (215)
T KOG0097|consen 10 YIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALM 89 (215)
T ss_pred heEEEEEEccccccHHHHHHHHHHHHHhhcCCcccceecceeEEEecCcEEEEEEeecccHHHHHHHHHHHhccccceeE
Confidence 36899999999999999999999999888888999999999999999999999999999999999999999999999999
Q ss_pred EEeCCChhhhhhHHHHHHHHhhh-cCCCCEEEEEeCCCCCccc--cCHHHHHHHHHcCCeEEEeccCCCCChHHHHHHHH
Q 030504 92 MFDVTARLTYKNVPTWHRDLCRV-CENIPIVLCGNKVDVKNRQ--VKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLA 168 (176)
Q Consensus 92 v~d~~~~~s~~~~~~~~~~~~~~-~~~~p~liv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l~ 168 (176)
|||++.+.+++.+..|+...... .|+.-+++++||.||+... ..++...++.+.|+.|+++|+++|+++++.|-..+
T Consensus 90 vyditrrstynhlsswl~dar~ltnpnt~i~lignkadle~qrdv~yeeak~faeengl~fle~saktg~nvedafle~a 169 (215)
T KOG0097|consen 90 VYDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADLESQRDVTYEEAKEFAEENGLMFLEASAKTGQNVEDAFLETA 169 (215)
T ss_pred EEEehhhhhhhhHHHHHhhhhccCCCceEEEEecchhhhhhcccCcHHHHHHHHhhcCeEEEEecccccCcHHHHHHHHH
Confidence 99999999999999999887665 3788899999999998643 34567799999999999999999999999999999
Q ss_pred HHHhcCC
Q 030504 169 RKLAGST 175 (176)
Q Consensus 169 ~~i~~~~ 175 (176)
++|+++.
T Consensus 170 kkiyqni 176 (215)
T KOG0097|consen 170 KKIYQNI 176 (215)
T ss_pred HHHHHhh
Confidence 9988753
|
|
| >cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-33 Score=183.70 Aligned_cols=150 Identities=15% Similarity=0.155 Sum_probs=126.3
Q ss_pred EEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccccccccccEEEEEEeC
Q 030504 16 LVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDV 95 (176)
Q Consensus 16 i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~ 95 (176)
|+++|++|||||||+++|..+.+...+.|+.|... ...+...+.+.+||++|++.++..+..+++++|++++|||+
T Consensus 2 i~ivG~~~vGKTsli~~~~~~~~~~~~~pt~g~~~----~~i~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~ 77 (164)
T cd04162 2 ILVLGLDGAGKTSLLHSLSSERSLESVVPTTGFNS----VAIPTQDAIMELLEIGGSQNLRKYWKRYLSGSQGLIFVVDS 77 (164)
T ss_pred EEEECCCCCCHHHHHHHHhcCCCcccccccCCcce----EEEeeCCeEEEEEECCCCcchhHHHHHHHhhCCEEEEEEEC
Confidence 78999999999999999999888888888887643 23345678899999999999999999999999999999999
Q ss_pred CChhhhhhHHHHHHHHhhhcCCCCEEEEEeCCCCCccccCHH------HHHHHHHcCCeEEEeccCC------CCChHHH
Q 030504 96 TARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAK------QVTFHRKKNLQYYEISAKS------NYNFEKP 163 (176)
Q Consensus 96 ~~~~s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~~~~~~~~------~~~~~~~~~~~~~~~S~~~------~~~v~~~ 163 (176)
+++.++.....|+..+....++.|+++|+||+|+.......+ ...++++.++.+++|||++ ++||+++
T Consensus 78 t~~~s~~~~~~~l~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~Sa~~~~s~~~~~~v~~~ 157 (164)
T cd04162 78 ADSERLPLARQELHQLLQHPPDLPLVVLANKQDLPAARSVQEIHKELELEPIARGRRWILQGTSLDDDGSPSRMEAVKDL 157 (164)
T ss_pred CCHHHHHHHHHHHHHHHhCCCCCcEEEEEeCcCCcCCCCHHHHHHHhCChhhcCCCceEEEEeeecCCCChhHHHHHHHH
Confidence 999999988888887765557899999999999976443322 2345566788999999888 9999999
Q ss_pred HHHHHH
Q 030504 164 FLYLAR 169 (176)
Q Consensus 164 ~~~l~~ 169 (176)
|+.++.
T Consensus 158 ~~~~~~ 163 (164)
T cd04162 158 LSQLIN 163 (164)
T ss_pred HHHHhc
Confidence 998863
|
Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date. |
| >cd04152 Arl4_Arl7 Arl4/Arl7 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-33 Score=183.35 Aligned_cols=161 Identities=21% Similarity=0.277 Sum_probs=128.6
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEe-cCcEEEEEEEeCCCccccccccccccccccEEE
Q 030504 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFT-NCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (176)
Q Consensus 12 ~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 90 (176)
..+||+++|.+|||||||++++..+.+... .|+.|.+........ +...+.+.+|||+|++++...+..+++.+|+++
T Consensus 2 ~~~kv~~vG~~~~GKTsli~~~~~~~~~~~-~~t~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii 80 (183)
T cd04152 2 QSLHIVMLGLDSAGKTTVLYRLKFNEFVNT-VPTKGFNTEKIKVSLGNSKGITFHFWDVGGQEKLRPLWKSYTRCTDGIV 80 (183)
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCcCCc-CCccccceeEEEeeccCCCceEEEEEECCCcHhHHHHHHHHhccCCEEE
Confidence 358999999999999999999988877654 577776665555544 346789999999999999999999999999999
Q ss_pred EEEeCCChhhhhhHHHHHHHHhhhc--CCCCEEEEEeCCCCCccccCHHHHHHHH------HcCCeEEEeccCCCCChHH
Q 030504 91 IMFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNRQVKAKQVTFHR------KKNLQYYEISAKSNYNFEK 162 (176)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~liv~nK~Dl~~~~~~~~~~~~~~------~~~~~~~~~S~~~~~~v~~ 162 (176)
+|+|++++.+++.+..|+..+.... .+.|+++|+||+|+.......+...+.. ...++++++||++++|+++
T Consensus 81 ~v~D~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~ 160 (183)
T cd04152 81 FVVDSVDVERMEEAKTELHKITRFSENQGVPVLVLANKQDLPNALSVSEVEKLLALHELSASTPWHVQPACAIIGEGLQE 160 (183)
T ss_pred EEEECCCHHHHHHHHHHHHHHHhhhhcCCCcEEEEEECcCccccCCHHHHHHHhCccccCCCCceEEEEeecccCCCHHH
Confidence 9999999998888888877766542 4799999999999975433233333221 1235689999999999999
Q ss_pred HHHHHHHHHhc
Q 030504 163 PFLYLARKLAG 173 (176)
Q Consensus 163 ~~~~l~~~i~~ 173 (176)
+|++|++.+.+
T Consensus 161 l~~~l~~~l~~ 171 (183)
T cd04152 161 GLEKLYEMILK 171 (183)
T ss_pred HHHHHHHHHHH
Confidence 99999988754
|
Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily. |
| >cd04154 Arl2 Arl2 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-33 Score=182.75 Aligned_cols=155 Identities=18% Similarity=0.286 Sum_probs=123.0
Q ss_pred CCCeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccccccccccEE
Q 030504 10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCA 89 (176)
Q Consensus 10 ~~~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~ 89 (176)
....+||+++|++|||||||++++..+. ...+.++.|...... .. ..+.+.+||+||++.++..+..+++.+|++
T Consensus 11 ~~~~~kv~ivG~~~~GKTsL~~~l~~~~-~~~~~~t~g~~~~~~--~~--~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~ 85 (173)
T cd04154 11 KEREMRILILGLDNAGKTTILKKLLGED-IDTISPTLGFQIKTL--EY--EGYKLNIWDVGGQKTLRPYWRNYFESTDAL 85 (173)
T ss_pred CCCccEEEEECCCCCCHHHHHHHHccCC-CCCcCCccccceEEE--EE--CCEEEEEEECCCCHHHHHHHHHHhCCCCEE
Confidence 3467899999999999999999987664 345667776444333 23 257899999999999888899999999999
Q ss_pred EEEEeCCChhhhhhHHHHHHHHhhh--cCCCCEEEEEeCCCCCccccCHHHHHHH-----HHcCCeEEEeccCCCCChHH
Q 030504 90 IIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVTFH-----RKKNLQYYEISAKSNYNFEK 162 (176)
Q Consensus 90 i~v~d~~~~~s~~~~~~~~~~~~~~--~~~~p~liv~nK~Dl~~~~~~~~~~~~~-----~~~~~~~~~~S~~~~~~v~~ 162 (176)
++|||++++.+++....|+..+... ..+.|+++|+||+|+.......+...+. ...+++++++||++|.|+++
T Consensus 86 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~ 165 (173)
T cd04154 86 IWVVDSSDRLRLDDCKRELKELLQEERLAGATLLILANKQDLPGALSEEEIREALELDKISSHHWRIQPCSAVTGEGLLQ 165 (173)
T ss_pred EEEEECCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcccccCCCHHHHHHHhCccccCCCceEEEeccCCCCcCHHH
Confidence 9999999999998888777766432 3689999999999997654333333333 23467899999999999999
Q ss_pred HHHHHHH
Q 030504 163 PFLYLAR 169 (176)
Q Consensus 163 ~~~~l~~ 169 (176)
+|+|++.
T Consensus 166 l~~~l~~ 172 (173)
T cd04154 166 GIDWLVD 172 (173)
T ss_pred HHHHHhc
Confidence 9999874
|
Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis. |
| >cd04114 Rab30 Rab30 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-32 Score=177.72 Aligned_cols=160 Identities=34% Similarity=0.614 Sum_probs=137.1
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccccccccccEEEE
Q 030504 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAII 91 (176)
Q Consensus 12 ~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~ 91 (176)
..+||+++|++|||||||++++..+.+...+.++.+.+.....+..++..+.+.+||++|++.+...+..++..+|++++
T Consensus 6 ~~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~ 85 (169)
T cd04114 6 FLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEIKGEKIKLQIWDTAGQERFRSITQSYYRSANALIL 85 (169)
T ss_pred ceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEEE
Confidence 46899999999999999999998888877778888877777777788888899999999999998888899999999999
Q ss_pred EEeCCChhhhhhHHHHHHHHhhhc-CCCCEEEEEeCCCCCc-cccCHH-HHHHHHHcCCeEEEeccCCCCChHHHHHHHH
Q 030504 92 MFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKN-RQVKAK-QVTFHRKKNLQYYEISAKSNYNFEKPFLYLA 168 (176)
Q Consensus 92 v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~liv~nK~Dl~~-~~~~~~-~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l~ 168 (176)
|||++++.+++.+..|+..+.... .+.|+++|+||+|+.. +....+ ...+.+.....++++|+++|.|++++|++++
T Consensus 86 v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~i~v~NK~D~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~i~ 165 (169)
T cd04114 86 TYDITCEESFRCLPEWLREIEQYANNKVITILVGNKIDLAERREVSQQRAEEFSDAQDMYYLETSAKESDNVEKLFLDLA 165 (169)
T ss_pred EEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccccCHHHHHHHHHHcCCeEEEeeCCCCCCHHHHHHHHH
Confidence 999999999999989988876654 3789999999999974 333333 3455666678999999999999999999999
Q ss_pred HHH
Q 030504 169 RKL 171 (176)
Q Consensus 169 ~~i 171 (176)
+.+
T Consensus 166 ~~~ 168 (169)
T cd04114 166 CRL 168 (169)
T ss_pred HHh
Confidence 865
|
Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. |
| >cd04129 Rho2 Rho2 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-32 Score=179.51 Aligned_cols=158 Identities=30% Similarity=0.482 Sum_probs=130.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccccccccccEEEEEE
Q 030504 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMF 93 (176)
Q Consensus 14 ~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 93 (176)
.||+++|++|+|||||++++..+.+...+.++.+..+. .....++..+.+.+||++|++.+.......+..++++++||
T Consensus 2 ~Ki~ivG~~g~GKStLl~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~a~~~llv~ 80 (187)
T cd04129 2 RKLVIVGDGACGKTSLLSVFTLGEFPEEYHPTVFENYV-TDCRVDGKPVQLALWDTAGQEEYERLRPLSYSKAHVILIGF 80 (187)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEE-EEEEECCEEEEEEEEECCCChhccccchhhcCCCCEEEEEE
Confidence 69999999999999999999888887777776653332 34455667788999999999988877777788999999999
Q ss_pred eCCChhhhhhHH-HHHHHHhhhcCCCCEEEEEeCCCCCccc------------cCHHHHHHHHHcCC-eEEEeccCCCCC
Q 030504 94 DVTARLTYKNVP-TWHRDLCRVCENIPIVLCGNKVDVKNRQ------------VKAKQVTFHRKKNL-QYYEISAKSNYN 159 (176)
Q Consensus 94 d~~~~~s~~~~~-~~~~~~~~~~~~~p~liv~nK~Dl~~~~------------~~~~~~~~~~~~~~-~~~~~S~~~~~~ 159 (176)
|+++..+++.+. .|+..+....++.|+++|+||.|+.... ...+...+++..++ .+|+|||++|.|
T Consensus 81 ~i~~~~s~~~~~~~~~~~i~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~ 160 (187)
T cd04129 81 AVDTPDSLENVRTKWIEEVRRYCPNVPVILVGLKKDLRQDAVAKEEYRTQRFVPIQQGKRVAKEIGAKKYMECSALTGEG 160 (187)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEeeChhhhhCcccccccccCCcCCHHHHHHHHHHhCCcEEEEccCCCCCC
Confidence 999999999986 5888887777789999999999985421 12345577777874 899999999999
Q ss_pred hHHHHHHHHHHHh
Q 030504 160 FEKPFLYLARKLA 172 (176)
Q Consensus 160 v~~~~~~l~~~i~ 172 (176)
++++|+++++.+.
T Consensus 161 v~~~f~~l~~~~~ 173 (187)
T cd04129 161 VDDVFEAATRAAL 173 (187)
T ss_pred HHHHHHHHHHHHh
Confidence 9999999998654
|
Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors). |
| >KOG0395 consensus Ras-related GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-32 Score=182.04 Aligned_cols=161 Identities=32% Similarity=0.569 Sum_probs=145.3
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccccccccccEEEE
Q 030504 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAII 91 (176)
Q Consensus 12 ~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~ 91 (176)
..+||+++|.+|+|||+|+.+|+.+.|.+.|.||++ +.......+++..+.+.++||+|++.+..+...++..++++++
T Consensus 2 ~~~kvvvlG~~gVGKSal~~qf~~~~f~~~y~ptie-d~y~k~~~v~~~~~~l~ilDt~g~~~~~~~~~~~~~~~~gF~l 80 (196)
T KOG0395|consen 2 REYKVVVLGAGGVGKSALTIQFLTGRFVEDYDPTIE-DSYRKELTVDGEVCMLEILDTAGQEEFSAMRDLYIRNGDGFLL 80 (196)
T ss_pred CceEEEEECCCCCCcchheeeecccccccccCCCcc-ccceEEEEECCEEEEEEEEcCCCcccChHHHHHhhccCcEEEE
Confidence 579999999999999999999999999999999998 6677777888999999999999999999999999999999999
Q ss_pred EEeCCChhhhhhHHHHHHHHhhhc--CCCCEEEEEeCCCCCc-ccc-CHHHHHHHHHcCCeEEEeccCCCCChHHHHHHH
Q 030504 92 MFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKN-RQV-KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYL 167 (176)
Q Consensus 92 v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~liv~nK~Dl~~-~~~-~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l 167 (176)
||+++++.||+.+..+...+.+.. ...|+++|+||+|+.. +.+ .++...++...+++|+|+||+.+.+++++|..|
T Consensus 81 Vysitd~~SF~~~~~l~~~I~r~~~~~~~PivlVGNK~Dl~~~R~V~~eeg~~la~~~~~~f~E~Sak~~~~v~~~F~~L 160 (196)
T KOG0395|consen 81 VYSITDRSSFEEAKQLREQILRVKGRDDVPIILVGNKCDLERERQVSEEEGKALARSWGCAFIETSAKLNYNVDEVFYEL 160 (196)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhhCcCCCCEEEEEEcccchhccccCHHHHHHHHHhcCCcEEEeeccCCcCHHHHHHHH
Confidence 999999999999999999885432 4689999999999987 333 445678899999999999999999999999999
Q ss_pred HHHHhc
Q 030504 168 ARKLAG 173 (176)
Q Consensus 168 ~~~i~~ 173 (176)
++.+..
T Consensus 161 ~r~~~~ 166 (196)
T KOG0395|consen 161 VREIRL 166 (196)
T ss_pred HHHHHh
Confidence 997754
|
|
| >cd00157 Rho Rho (Ras homology) family | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-32 Score=177.26 Aligned_cols=155 Identities=29% Similarity=0.519 Sum_probs=128.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccccccccccEEEEEE
Q 030504 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMF 93 (176)
Q Consensus 14 ~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 93 (176)
+||+++|++|||||||++++..+.+...+.++.. +........++..+.+.+||+||++.+......+++.+|++++||
T Consensus 1 iki~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 79 (171)
T cd00157 1 IKIVVVGDGAVGKTCLLISYTTGKFPTEYVPTVF-DNYSATVTVDGKQVNLGLWDTAGQEEYDRLRPLSYPNTDVFLICF 79 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcee-eeeEEEEEECCEEEEEEEEeCCCcccccccchhhcCCCCEEEEEE
Confidence 5899999999999999999999988666666664 333344556677889999999999998888888889999999999
Q ss_pred eCCChhhhhhHH-HHHHHHhhhcCCCCEEEEEeCCCCCcccc-------------CHHHHHHHHHcCC-eEEEeccCCCC
Q 030504 94 DVTARLTYKNVP-TWHRDLCRVCENIPIVLCGNKVDVKNRQV-------------KAKQVTFHRKKNL-QYYEISAKSNY 158 (176)
Q Consensus 94 d~~~~~s~~~~~-~~~~~~~~~~~~~p~liv~nK~Dl~~~~~-------------~~~~~~~~~~~~~-~~~~~S~~~~~ 158 (176)
|++++.++.... .|+..+....++.|+++|+||+|+..... ..+...++...++ +++++||++|.
T Consensus 80 d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~ 159 (171)
T cd00157 80 SVDSPSSFENVKTKWIPEIRHYCPNVPIILVGTKIDLRDDENTLKKLEKGKEPITPEEGEKLAKEIGAIGYMECSALTQE 159 (171)
T ss_pred ECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEccHHhhhchhhhhhcccCCCccCHHHHHHHHHHhCCeEEEEeecCCCC
Confidence 999999988765 57777777667899999999999875442 2334566777777 99999999999
Q ss_pred ChHHHHHHHHH
Q 030504 159 NFEKPFLYLAR 169 (176)
Q Consensus 159 ~v~~~~~~l~~ 169 (176)
|++++|.++++
T Consensus 160 gi~~l~~~i~~ 170 (171)
T cd00157 160 GVKEVFEEAIR 170 (171)
T ss_pred CHHHHHHHHhh
Confidence 99999999875
|
Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein |
| >PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-32 Score=179.39 Aligned_cols=156 Identities=24% Similarity=0.432 Sum_probs=129.4
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccccccccccEEE
Q 030504 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (176)
Q Consensus 11 ~~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 90 (176)
.+.+||+++|+.+||||||++++..+.... ..||.|........ .++.+.+||.+|+..++..|+.++..++++|
T Consensus 12 ~~~~~ililGl~~sGKTtll~~l~~~~~~~-~~pT~g~~~~~i~~----~~~~~~~~d~gG~~~~~~~w~~y~~~~~~iI 86 (175)
T PF00025_consen 12 KKEIKILILGLDGSGKTTLLNRLKNGEISE-TIPTIGFNIEEIKY----KGYSLTIWDLGGQESFRPLWKSYFQNADGII 86 (175)
T ss_dssp TSEEEEEEEESTTSSHHHHHHHHHSSSEEE-EEEESSEEEEEEEE----TTEEEEEEEESSSGGGGGGGGGGHTTESEEE
T ss_pred CcEEEEEEECCCccchHHHHHHhhhccccc-cCcccccccceeee----CcEEEEEEeccccccccccceeeccccceeE
Confidence 678999999999999999999987766543 67888877666555 6678999999999999999999999999999
Q ss_pred EEEeCCChhhhhhHHHHHHHHhhh--cCCCCEEEEEeCCCCCccccCHHHHHHH------HHcCCeEEEeccCCCCChHH
Q 030504 91 IMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVTFH------RKKNLQYYEISAKSNYNFEK 162 (176)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~--~~~~p~liv~nK~Dl~~~~~~~~~~~~~------~~~~~~~~~~S~~~~~~v~~ 162 (176)
||+|+++...+.+....+..+... ..+.|+++++||+|+.+.....+..... ....+.++.||+.+|+|+.+
T Consensus 87 fVvDssd~~~l~e~~~~L~~ll~~~~~~~~piLIl~NK~D~~~~~~~~~i~~~l~l~~l~~~~~~~v~~~sa~~g~Gv~e 166 (175)
T PF00025_consen 87 FVVDSSDPERLQEAKEELKELLNDPELKDIPILILANKQDLPDAMSEEEIKEYLGLEKLKNKRPWSVFSCSAKTGEGVDE 166 (175)
T ss_dssp EEEETTGGGGHHHHHHHHHHHHTSGGGTTSEEEEEEESTTSTTSSTHHHHHHHTTGGGTTSSSCEEEEEEBTTTTBTHHH
T ss_pred EEEecccceeecccccchhhhcchhhcccceEEEEeccccccCcchhhHHHhhhhhhhcccCCceEEEeeeccCCcCHHH
Confidence 999999998888888777766553 3689999999999998755444433222 13456799999999999999
Q ss_pred HHHHHHHHH
Q 030504 163 PFLYLARKL 171 (176)
Q Consensus 163 ~~~~l~~~i 171 (176)
.++||.++|
T Consensus 167 ~l~WL~~~~ 175 (175)
T PF00025_consen 167 GLEWLIEQI 175 (175)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHhcC
Confidence 999999875
|
This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A .... |
| >KOG0393 consensus Ras-related small GTPase, Rho type [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-33 Score=180.19 Aligned_cols=163 Identities=26% Similarity=0.465 Sum_probs=145.9
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEec-CcEEEEEEEeCCCccccccccccccccccEEE
Q 030504 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTN-CGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (176)
Q Consensus 12 ~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 90 (176)
..+|+++||...+|||+|+..+..+.|+..|.||.- +.....+.++ ++.+.+.+|||+|++.|..+++..|.++|+++
T Consensus 3 ~~~K~VvVGDga~GKT~ll~~~t~~~fp~~yvPTVF-dnys~~v~V~dg~~v~L~LwDTAGqedYDrlRplsY~~tdvfl 81 (198)
T KOG0393|consen 3 RRIKCVVVGDGAVGKTCLLISYTTNAFPEEYVPTVF-DNYSANVTVDDGKPVELGLWDTAGQEDYDRLRPLSYPQTDVFL 81 (198)
T ss_pred eeeEEEEECCCCcCceEEEEEeccCcCcccccCeEE-ccceEEEEecCCCEEEEeeeecCCCcccccccccCCCCCCEEE
Confidence 568999999999999999999999999999999995 7777778885 99999999999999999998888999999999
Q ss_pred EEEeCCChhhhhhHH-HHHHHHhhhcCCCCEEEEEeCCCCCccc--------------cCHHHHHHHHHcC-CeEEEecc
Q 030504 91 IMFDVTARLTYKNVP-TWHRDLCRVCENIPIVLCGNKVDVKNRQ--------------VKAKQVTFHRKKN-LQYYEISA 154 (176)
Q Consensus 91 ~v~d~~~~~s~~~~~-~~~~~~~~~~~~~p~liv~nK~Dl~~~~--------------~~~~~~~~~~~~~-~~~~~~S~ 154 (176)
+||++.++.+++++. +|+..+.+.+++.|+++||+|.||.++. ..++..+++++.| ..|+||||
T Consensus 82 ~cfsv~~p~S~~nv~~kW~pEi~~~cp~vpiiLVGtk~DLr~d~~~~~~l~~~~~~~Vt~~~g~~lA~~iga~~y~EcSa 161 (198)
T KOG0393|consen 82 LCFSVVSPESFENVKSKWIPEIKHHCPNVPIILVGTKADLRDDPSTLEKLQRQGLEPVTYEQGLELAKEIGAVKYLECSA 161 (198)
T ss_pred EEEEcCChhhHHHHHhhhhHHHHhhCCCCCEEEEeehHHhhhCHHHHHHHHhccCCcccHHHHHHHHHHhCcceeeeehh
Confidence 999999999999875 7999999999999999999999998421 1234567888888 68999999
Q ss_pred CCCCChHHHHHHHHHHHhcCC
Q 030504 155 KSNYNFEKPFLYLARKLAGST 175 (176)
Q Consensus 155 ~~~~~v~~~~~~l~~~i~~~~ 175 (176)
++..|+.++|+..+..+...+
T Consensus 162 ~tq~~v~~vF~~a~~~~l~~~ 182 (198)
T KOG0393|consen 162 LTQKGVKEVFDEAIRAALRPP 182 (198)
T ss_pred hhhCCcHHHHHHHHHHHhccc
Confidence 999999999999999887643
|
|
| >KOG0073 consensus GTP-binding ADP-ribosylation factor-like protein ARL2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-32 Score=168.79 Aligned_cols=158 Identities=20% Similarity=0.352 Sum_probs=134.1
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccccccccccEEEE
Q 030504 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAII 91 (176)
Q Consensus 12 ~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~ 91 (176)
++++|+++|..||||||++++ +.+...+...||.|+....... +.+.+++||.+|+...++.|+.|+.++|++|+
T Consensus 15 rE~riLiLGLdNsGKTti~~k-l~~~~~~~i~pt~gf~Iktl~~----~~~~L~iwDvGGq~~lr~~W~nYfestdglIw 89 (185)
T KOG0073|consen 15 REVRILILGLDNSGKTTIVKK-LLGEDTDTISPTLGFQIKTLEY----KGYTLNIWDVGGQKTLRSYWKNYFESTDGLIW 89 (185)
T ss_pred heeEEEEEecCCCCchhHHHH-hcCCCccccCCccceeeEEEEe----cceEEEEEEcCCcchhHHHHHHhhhccCeEEE
Confidence 489999999999999999999 4566677788999877776665 78899999999999999999999999999999
Q ss_pred EEeCCChhhhhhHHHHHHHHhh--hcCCCCEEEEEeCCCCCccccCH------HHHHHHHHcCCeEEEeccCCCCChHHH
Q 030504 92 MFDVTARLTYKNVPTWHRDLCR--VCENIPIVLCGNKVDVKNRQVKA------KQVTFHRKKNLQYYEISAKSNYNFEKP 163 (176)
Q Consensus 92 v~d~~~~~s~~~~~~~~~~~~~--~~~~~p~liv~nK~Dl~~~~~~~------~~~~~~~~~~~~~~~~S~~~~~~v~~~ 163 (176)
|+|.+++..+++....+..+.. ...+.|+++++||.|+.+..... +..++++..+++++.||+.+|+++.+.
T Consensus 90 vvDssD~~r~~e~~~~L~~lL~eerlaG~~~Lvlank~dl~~~l~~~~i~~~~~L~~l~ks~~~~l~~cs~~tge~l~~g 169 (185)
T KOG0073|consen 90 VVDSSDRMRMQECKQELTELLVEERLAGAPLLVLANKQDLPGALSLEEISKALDLEELAKSHHWRLVKCSAVTGEDLLEG 169 (185)
T ss_pred EEECchHHHHHHHHHHHHHHHhhhhhcCCceEEEEecCcCccccCHHHHHHhhCHHHhccccCceEEEEeccccccHHHH
Confidence 9999999988888766655543 33578999999999998643322 234666888999999999999999999
Q ss_pred HHHHHHHHhcC
Q 030504 164 FLYLARKLAGS 174 (176)
Q Consensus 164 ~~~l~~~i~~~ 174 (176)
+.|++..+.++
T Consensus 170 idWL~~~l~~r 180 (185)
T KOG0073|consen 170 IDWLCDDLMSR 180 (185)
T ss_pred HHHHHHHHHHH
Confidence 99999988753
|
|
| >cd04157 Arl6 Arl6 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-32 Score=179.21 Aligned_cols=151 Identities=24% Similarity=0.393 Sum_probs=119.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC-CCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccccccccccEEEEEE
Q 030504 15 KLVIVGDGGTGKTTFVKRHLTGE-FEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMF 93 (176)
Q Consensus 15 ~i~i~G~~~~GKttl~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 93 (176)
+|+++|.++||||||++++..+. +...+.|+.|...... ....+.+.+|||||++.+...+..+++.+|++++|+
T Consensus 1 ~i~~vG~~~~GKTsl~~~l~~~~~~~~~~~~t~g~~~~~~----~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~ 76 (162)
T cd04157 1 NILVVGLDNSGKTTIINQLKPENAQSQIIVPTVGFNVESF----EKGNLSFTAFDMSGQGKYRGLWEHYYKNIQGIIFVI 76 (162)
T ss_pred CEEEECCCCCCHHHHHHHHcccCCCcceecCccccceEEE----EECCEEEEEEECCCCHhhHHHHHHHHccCCEEEEEE
Confidence 58999999999999999988775 3556778887654332 235678999999999999999999999999999999
Q ss_pred eCCChhhhhhHHHHHHHHhhh----cCCCCEEEEEeCCCCCccccCHHHHHHH-----HHcCCeEEEeccCCCCChHHHH
Q 030504 94 DVTARLTYKNVPTWHRDLCRV----CENIPIVLCGNKVDVKNRQVKAKQVTFH-----RKKNLQYYEISAKSNYNFEKPF 164 (176)
Q Consensus 94 d~~~~~s~~~~~~~~~~~~~~----~~~~p~liv~nK~Dl~~~~~~~~~~~~~-----~~~~~~~~~~S~~~~~~v~~~~ 164 (176)
|++++.++..+..|+..+... ..+.|+++|+||+|+.+.....+..... ....+.++++||++|.|++++|
T Consensus 77 D~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~Sa~~g~gv~~~~ 156 (162)
T cd04157 77 DSSDRLRLVVVKDELELLLNHPDIKHRRVPILFFANKMDLPDALTAVKITQLLGLENIKDKPWHIFASNALTGEGLDEGV 156 (162)
T ss_pred eCCcHHHHHHHHHHHHHHHcCcccccCCCCEEEEEeCccccCCCCHHHHHHHhCCccccCceEEEEEeeCCCCCchHHHH
Confidence 999999988888777766542 1479999999999997643322222111 1123568999999999999999
Q ss_pred HHHHH
Q 030504 165 LYLAR 169 (176)
Q Consensus 165 ~~l~~ 169 (176)
+||.+
T Consensus 157 ~~l~~ 161 (162)
T cd04157 157 QWLQA 161 (162)
T ss_pred HHHhc
Confidence 99875
|
Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A |
| >cd01893 Miro1 Miro1 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-31 Score=175.17 Aligned_cols=158 Identities=18% Similarity=0.288 Sum_probs=124.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccccccccccEEEEEE
Q 030504 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMF 93 (176)
Q Consensus 14 ~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 93 (176)
+||+++|.+|||||||++++..+.+...+.++.. .........+..+.+.+|||+|.+.+...+..++..+|++++||
T Consensus 1 ~kv~ivG~~~vGKTsl~~~l~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~ 78 (166)
T cd01893 1 VRIVLIGDEGVGKSSLIMSLVSEEFPENVPRVLP--EITIPADVTPERVPTTIVDTSSRPQDRANLAAEIRKANVICLVY 78 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCCccCCCccc--ceEeeeeecCCeEEEEEEeCCCchhhhHHHhhhcccCCEEEEEE
Confidence 4899999999999999999999988765443322 12233345567789999999999888777777889999999999
Q ss_pred eCCChhhhhhHH-HHHHHHhhhcCCCCEEEEEeCCCCCccccC----HHHHHHHHHc-C-CeEEEeccCCCCChHHHHHH
Q 030504 94 DVTARLTYKNVP-TWHRDLCRVCENIPIVLCGNKVDVKNRQVK----AKQVTFHRKK-N-LQYYEISAKSNYNFEKPFLY 166 (176)
Q Consensus 94 d~~~~~s~~~~~-~~~~~~~~~~~~~p~liv~nK~Dl~~~~~~----~~~~~~~~~~-~-~~~~~~S~~~~~~v~~~~~~ 166 (176)
|++++.+++.+. .|+..+....++.|+++|+||+|+.+.... .+...+.... + ..+++|||+++.|++++|..
T Consensus 79 d~~~~~s~~~~~~~~~~~i~~~~~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~lf~~ 158 (166)
T cd01893 79 SVDRPSTLERIRTKWLPLIRRLGVKVPIILVGNKSDLRDGSSQAGLEEEMLPIMNEFREIETCVECSAKTLINVSEVFYY 158 (166)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEchhcccccchhHHHHHHHHHHHHHhcccEEEEeccccccCHHHHHHH
Confidence 999999999975 677777665568999999999999764432 2222333333 2 48999999999999999999
Q ss_pred HHHHHhc
Q 030504 167 LARKLAG 173 (176)
Q Consensus 167 l~~~i~~ 173 (176)
+.+.+..
T Consensus 159 ~~~~~~~ 165 (166)
T cd01893 159 AQKAVLH 165 (166)
T ss_pred HHHHhcC
Confidence 9988754
|
Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature. |
| >cd00876 Ras Ras family | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-31 Score=174.54 Aligned_cols=156 Identities=33% Similarity=0.591 Sum_probs=133.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccccccccccEEEEEEe
Q 030504 15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFD 94 (176)
Q Consensus 15 ~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d 94 (176)
||+++|++|||||||+++++.+.+...+.++.+ +........++..+.+.+||+||++.+...+..+++.+|++++|||
T Consensus 1 ki~i~G~~~~GKTsli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d 79 (160)
T cd00876 1 KVVVLGAGGVGKSAITIQFVKGTFVEEYDPTIE-DSYRKTIVVDGETYTLDILDTAGQEEFSAMRDLYIRQGDGFILVYS 79 (160)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCcCcCCChh-HeEEEEEEECCEEEEEEEEECCChHHHHHHHHHHHhcCCEEEEEEE
Confidence 689999999999999999998888777777766 4455555666677899999999999988889999999999999999
Q ss_pred CCChhhhhhHHHHHHHHhhhcC--CCCEEEEEeCCCCCc-cc-cCHHHHHHHHHcCCeEEEeccCCCCChHHHHHHHHHH
Q 030504 95 VTARLTYKNVPTWHRDLCRVCE--NIPIVLCGNKVDVKN-RQ-VKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARK 170 (176)
Q Consensus 95 ~~~~~s~~~~~~~~~~~~~~~~--~~p~liv~nK~Dl~~-~~-~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l~~~ 170 (176)
++++.++..+..|...+..... ..|+++++||+|+.. .. ...+...+++..+++++++|++++.|++++|++|++.
T Consensus 80 ~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~l~~~l~~~ 159 (160)
T cd00876 80 ITDRESFEEIKGYREQILRVKDDEDIPIVLVGNKCDLENERQVSKEEGKALAKEWGCPFIETSAKDNINIDEVFKLLVRE 159 (160)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCcccccceecHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHhh
Confidence 9999999999988888877654 899999999999976 22 2345567777788999999999999999999999876
Q ss_pred H
Q 030504 171 L 171 (176)
Q Consensus 171 i 171 (176)
+
T Consensus 160 i 160 (160)
T cd00876 160 I 160 (160)
T ss_pred C
Confidence 4
|
The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m |
| >KOG0083 consensus GTPase Rab26/Rab37, small G protein superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-34 Score=170.65 Aligned_cols=158 Identities=25% Similarity=0.538 Sum_probs=141.7
Q ss_pred EEEcCCCCcHHHHHHHHhcCCCC-CccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccccccccccEEEEEEeC
Q 030504 17 VIVGDGGTGKTTFVKRHLTGEFE-KKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDV 95 (176)
Q Consensus 17 ~i~G~~~~GKttl~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~ 95 (176)
+++|.+++|||+|+-||..|.|. .+..+|.|+++..+.+..+++.+++++|||+|+|++++...+||+.+|+.+++||+
T Consensus 1 mllgds~~gktcllir~kdgafl~~~fistvgid~rnkli~~~~~kvklqiwdtagqerfrsvt~ayyrda~allllydi 80 (192)
T KOG0083|consen 1 MLLGDSCTGKTCLLIRFKDGAFLAGNFISTVGIDFRNKLIDMDDKKVKLQIWDTAGQERFRSVTHAYYRDADALLLLYDI 80 (192)
T ss_pred CccccCccCceEEEEEeccCceecCceeeeeeeccccceeccCCcEEEEEEeeccchHHHhhhhHhhhcccceeeeeeec
Confidence 36899999999999998888775 45678999999999999999999999999999999999999999999999999999
Q ss_pred CChhhhhhHHHHHHHHhhhc-CCCCEEEEEeCCCCCccc--cCHHHHHHHHHcCCeEEEeccCCCCChHHHHHHHHHHHh
Q 030504 96 TARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNRQ--VKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLA 172 (176)
Q Consensus 96 ~~~~s~~~~~~~~~~~~~~~-~~~p~liv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l~~~i~ 172 (176)
.+..||++...|+..+.+.. ....+.+++||||+..+. ...+...+++.++++|+++|+++|.|++..|-.|++.+.
T Consensus 81 ankasfdn~~~wlsei~ey~k~~v~l~llgnk~d~a~er~v~~ddg~kla~~y~ipfmetsaktg~nvd~af~~ia~~l~ 160 (192)
T KOG0083|consen 81 ANKASFDNCQAWLSEIHEYAKEAVALMLLGNKCDLAHERAVKRDDGEKLAEAYGIPFMETSAKTGFNVDLAFLAIAEELK 160 (192)
T ss_pred ccchhHHHHHHHHHHHHHHHHhhHhHhhhccccccchhhccccchHHHHHHHHCCCceeccccccccHhHHHHHHHHHHH
Confidence 99999999999999998875 467789999999996533 344577999999999999999999999999999998876
Q ss_pred cC
Q 030504 173 GS 174 (176)
Q Consensus 173 ~~ 174 (176)
+.
T Consensus 161 k~ 162 (192)
T KOG0083|consen 161 KL 162 (192)
T ss_pred Hh
Confidence 53
|
|
| >cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-31 Score=176.68 Aligned_cols=160 Identities=26% Similarity=0.385 Sum_probs=133.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccccccccccEEEEEE
Q 030504 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMF 93 (176)
Q Consensus 14 ~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 93 (176)
.||+++|.+|+|||||+++++.+.+...+.++.+... ......++..+.+.+||+||++++...+..++..++++++||
T Consensus 2 ~kv~l~G~~g~GKTtl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~ 80 (180)
T cd04137 2 RKIAVLGSRSVGKSSLTVQFVEGHFVESYYPTIENTF-SKIIRYKGQDYHLEIVDTAGQDEYSILPQKYSIGIHGYILVY 80 (180)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCccccCcchhhhE-EEEEEECCEEEEEEEEECCChHhhHHHHHHHHhhCCEEEEEE
Confidence 6899999999999999999999888776667665333 334455666788999999999999888899999999999999
Q ss_pred eCCChhhhhhHHHHHHHHhhhc--CCCCEEEEEeCCCCCccc-cC-HHHHHHHHHcCCeEEEeccCCCCChHHHHHHHHH
Q 030504 94 DVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNRQ-VK-AKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLAR 169 (176)
Q Consensus 94 d~~~~~s~~~~~~~~~~~~~~~--~~~p~liv~nK~Dl~~~~-~~-~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l~~ 169 (176)
|+++..+++.+..|+..+.... .+.|+++++||+|+.... .. .+...+++..+++++++||+++.|+.++|.++++
T Consensus 81 d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~ 160 (180)
T cd04137 81 SVTSRKSFEVVKVIYDKILDMLGKESVPIVLVGNKSDLHTQRQVSTEEGKELAESWGAAFLESSARENENVEEAFELLIE 160 (180)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEchhhhhcCccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHH
Confidence 9999999999998888776653 478999999999987432 22 2345667777899999999999999999999999
Q ss_pred HHhcC
Q 030504 170 KLAGS 174 (176)
Q Consensus 170 ~i~~~ 174 (176)
.+.+.
T Consensus 161 ~~~~~ 165 (180)
T cd04137 161 EIEKV 165 (180)
T ss_pred HHHHh
Confidence 87654
|
Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le |
| >cd04153 Arl5_Arl8 Arl5/Arl8 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-32 Score=177.29 Aligned_cols=153 Identities=25% Similarity=0.377 Sum_probs=121.3
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccccccccccEEEE
Q 030504 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAII 91 (176)
Q Consensus 12 ~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~ 91 (176)
..+||+++|++++|||||++++..+.+.. +.++.+.+...... ..+.+.+||+||++.+...+..+++++|++++
T Consensus 14 ~~~kv~~~G~~~~GKTsl~~~l~~~~~~~-~~~t~~~~~~~~~~----~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~ 88 (174)
T cd04153 14 KEYKVIIVGLDNAGKTTILYQFLLGEVVH-TSPTIGSNVEEIVY----KNIRFLMWDIGGQESLRSSWNTYYTNTDAVIL 88 (174)
T ss_pred CccEEEEECCCCCCHHHHHHHHccCCCCC-cCCccccceEEEEE----CCeEEEEEECCCCHHHHHHHHHHhhcCCEEEE
Confidence 46899999999999999999998888765 56777765543322 46789999999999999999999999999999
Q ss_pred EEeCCChhhhhhHHHHHHHHhhh--cCCCCEEEEEeCCCCCccccCHHHHH-H----HHHcCCeEEEeccCCCCChHHHH
Q 030504 92 MFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVT-F----HRKKNLQYYEISAKSNYNFEKPF 164 (176)
Q Consensus 92 v~d~~~~~s~~~~~~~~~~~~~~--~~~~p~liv~nK~Dl~~~~~~~~~~~-~----~~~~~~~~~~~S~~~~~~v~~~~ 164 (176)
|+|++++.++.....++..+.+. ..+.|+++++||+|+.......+... + .+..+++++++||++|+|++++|
T Consensus 89 V~D~s~~~~~~~~~~~l~~~~~~~~~~~~p~viv~NK~Dl~~~~~~~~i~~~l~~~~~~~~~~~~~~~SA~~g~gi~e~~ 168 (174)
T cd04153 89 VIDSTDRERLPLTKEELYKMLAHEDLRKAVLLVLANKQDLKGAMTPAEISESLGLTSIRDHTWHIQGCCALTGEGLPEGL 168 (174)
T ss_pred EEECCCHHHHHHHHHHHHHHHhchhhcCCCEEEEEECCCCCCCCCHHHHHHHhCcccccCCceEEEecccCCCCCHHHHH
Confidence 99999998888877766665433 25799999999999976432222221 1 12345689999999999999999
Q ss_pred HHHHH
Q 030504 165 LYLAR 169 (176)
Q Consensus 165 ~~l~~ 169 (176)
+||++
T Consensus 169 ~~l~~ 173 (174)
T cd04153 169 DWIAS 173 (174)
T ss_pred HHHhc
Confidence 99975
|
Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date. |
| >cd04147 Ras_dva Ras-dva subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-31 Score=178.24 Aligned_cols=157 Identities=27% Similarity=0.412 Sum_probs=128.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccccccccccEEEEEEe
Q 030504 15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFD 94 (176)
Q Consensus 15 ~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d 94 (176)
||+++|.+|||||||+++|+.+.+...+.++.+ +.....+...+..+.+.+||++|+..+..++..++..+|++++|||
T Consensus 1 kv~vvG~~~vGKTsll~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~vilv~d 79 (198)
T cd04147 1 RLVFMGAAGVGKTALIQRFLYDTFEPKYRRTVE-EMHRKEYEVGGVSLTLDILDTSGSYSFPAMRKLSIQNSDAFALVYA 79 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCccCCCchh-hheeEEEEECCEEEEEEEEECCCchhhhHHHHHHhhcCCEEEEEEE
Confidence 689999999999999999999988877777664 3444455666677899999999999998888889999999999999
Q ss_pred CCChhhhhhHHHHHHHHhhhc--CCCCEEEEEeCCCCCcc-c-cCH-HHHHHHH-HcCCeEEEeccCCCCChHHHHHHHH
Q 030504 95 VTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNR-Q-VKA-KQVTFHR-KKNLQYYEISAKSNYNFEKPFLYLA 168 (176)
Q Consensus 95 ~~~~~s~~~~~~~~~~~~~~~--~~~p~liv~nK~Dl~~~-~-~~~-~~~~~~~-~~~~~~~~~S~~~~~~v~~~~~~l~ 168 (176)
++++.+++.+..|+..+.... .+.|+++|+||.|+... . ... ...+... ..+..++++||++|.|++++|++++
T Consensus 80 ~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~ 159 (198)
T cd04147 80 VDDPESFEEVERLREEILEVKEDKFVPIVVVGNKADSLEEERQVPAKDALSTVELDWNCGFVETSAKDNENVLEVFKELL 159 (198)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEccccccccccccHHHHHHHHHhhcCCcEEEecCCCCCCHHHHHHHHH
Confidence 999999999999888777654 47999999999998652 2 222 2222222 4467899999999999999999999
Q ss_pred HHHh
Q 030504 169 RKLA 172 (176)
Q Consensus 169 ~~i~ 172 (176)
+.+.
T Consensus 160 ~~~~ 163 (198)
T cd04147 160 RQAN 163 (198)
T ss_pred HHhh
Confidence 9765
|
Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. |
| >cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-32 Score=176.16 Aligned_cols=150 Identities=24% Similarity=0.304 Sum_probs=120.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccccccccccEEEEEEe
Q 030504 15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFD 94 (176)
Q Consensus 15 ~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d 94 (176)
+|+++|+++||||||++++..+ +...+.||.|...... . ...+.+.+||+||++.++..+..+++++|++++|||
T Consensus 1 ~i~~~G~~~~GKTsl~~~l~~~-~~~~~~~t~g~~~~~~--~--~~~~~~~i~D~~G~~~~~~~~~~~~~~a~~ii~V~D 75 (167)
T cd04161 1 TLLTVGLDNAGKTTLVSALQGE-IPKKVAPTVGFTPTKL--R--LDKYEVCIFDLGGGANFRGIWVNYYAEAHGLVFVVD 75 (167)
T ss_pred CEEEECCCCCCHHHHHHHHhCC-CCccccCcccceEEEE--E--ECCEEEEEEECCCcHHHHHHHHHHHcCCCEEEEEEE
Confidence 4899999999999999997755 7677788888654332 2 256789999999999999999999999999999999
Q ss_pred CCChhhhhhHHHHHHHHhhh--cCCCCEEEEEeCCCCCccccCHHHH------HHHHHc--CCeEEEeccCCC------C
Q 030504 95 VTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQV------TFHRKK--NLQYYEISAKSN------Y 158 (176)
Q Consensus 95 ~~~~~s~~~~~~~~~~~~~~--~~~~p~liv~nK~Dl~~~~~~~~~~------~~~~~~--~~~~~~~S~~~~------~ 158 (176)
++++.+++.+..|+..+... ..+.|+++|+||+|+.+.....+.. .++++. .+.+++|||++| .
T Consensus 76 ~s~~~s~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~~~~~i~~~~~l~~~~~~~~~~~~~~~~Sa~~g~~~~~~~ 155 (167)
T cd04161 76 SSDDDRVQEVKEILRELLQHPRVSGKPILVLANKQDKKNALLGADVIEYLSLEKLVNENKSLCHIEPCSAIEGLGKKIDP 155 (167)
T ss_pred CCchhHHHHHHHHHHHHHcCccccCCcEEEEEeCCCCcCCCCHHHHHHhcCcccccCCCCceEEEEEeEceeCCCCcccc
Confidence 99999999999888877654 2589999999999998654322222 223222 367888999998 8
Q ss_pred ChHHHHHHHHH
Q 030504 159 NFEKPFLYLAR 169 (176)
Q Consensus 159 ~v~~~~~~l~~ 169 (176)
|+++.|+||..
T Consensus 156 g~~~~~~wl~~ 166 (167)
T cd04161 156 SIVEGLRWLLA 166 (167)
T ss_pred CHHHHHHHHhc
Confidence 99999999975
|
Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene. |
| >cd00879 Sar1 Sar1 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-31 Score=178.71 Aligned_cols=156 Identities=18% Similarity=0.302 Sum_probs=122.7
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccccccccccEEE
Q 030504 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (176)
Q Consensus 11 ~~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 90 (176)
.+.+||+++|++|||||||++++..+.+. .+.++.+..... +.. ..+.+.+||+||++.+...+..+++++++++
T Consensus 17 ~~~~ki~ilG~~~~GKStLi~~l~~~~~~-~~~~T~~~~~~~--i~~--~~~~~~l~D~~G~~~~~~~~~~~~~~ad~ii 91 (190)
T cd00879 17 NKEAKILFLGLDNAGKTTLLHMLKDDRLA-QHVPTLHPTSEE--LTI--GNIKFKTFDLGGHEQARRLWKDYFPEVDGIV 91 (190)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCCc-ccCCccCcceEE--EEE--CCEEEEEEECCCCHHHHHHHHHHhccCCEEE
Confidence 45799999999999999999998877764 456666654333 233 3467899999999988888899999999999
Q ss_pred EEEeCCChhhhhhHHHHHHHHhhh--cCCCCEEEEEeCCCCCccccCHHHHHHHHH----------------cCCeEEEe
Q 030504 91 IMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVTFHRK----------------KNLQYYEI 152 (176)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~--~~~~p~liv~nK~Dl~~~~~~~~~~~~~~~----------------~~~~~~~~ 152 (176)
+|+|+++..+++....++..+... ..+.|+++++||+|+.+.....+...+... ..+.+++|
T Consensus 92 lV~D~~~~~s~~~~~~~~~~i~~~~~~~~~pvivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (190)
T cd00879 92 FLVDAADPERFQESKEELDSLLSDEELANVPFLILGNKIDLPGAVSEEELRQALGLYGTTTGKGVSLKVSGIRPIEVFMC 171 (190)
T ss_pred EEEECCcHHHHHHHHHHHHHHHcCccccCCCEEEEEeCCCCCCCcCHHHHHHHhCcccccccccccccccCceeEEEEEe
Confidence 999999998888777777766543 257999999999999764444444444332 23568999
Q ss_pred ccCCCCChHHHHHHHHHHH
Q 030504 153 SAKSNYNFEKPFLYLARKL 171 (176)
Q Consensus 153 S~~~~~~v~~~~~~l~~~i 171 (176)
||++|+|++++|+||++.+
T Consensus 172 Sa~~~~gv~e~~~~l~~~~ 190 (190)
T cd00879 172 SVVKRQGYGEAFRWLSQYL 190 (190)
T ss_pred EecCCCChHHHHHHHHhhC
Confidence 9999999999999998753
|
Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation. |
| >cd04102 RabL3 RabL3 (Rab-like3) subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-31 Score=177.10 Aligned_cols=146 Identities=19% Similarity=0.312 Sum_probs=124.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEec-----CcEEEEEEEeCCCccccccccccccccccE
Q 030504 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTN-----CGKIRFYCWDTAGQEKFGGLRDGYYIHGQC 88 (176)
Q Consensus 14 ~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~ 88 (176)
+||+++|.++||||||++++..+.+...+.+|.|.++......+. +..+.+.+|||+|++.+..++..+++++|+
T Consensus 1 vKIvlvGd~gVGKTSLi~~~~~~~f~~~~~~Tig~~~~~k~~~~~~~~~~~~~~~l~IwDtaG~e~~~~l~~~~yr~ad~ 80 (202)
T cd04102 1 VRVLVVGDSGVGKSSLVHLICKNQVLGRPSWTVGCSVDVKHHTYKEGTPEEKTFFVELWDVGGSESVKSTRAVFYNQVNG 80 (202)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCCCcceeeeEEEEEEEEcCCCCCCcEEEEEEEecCCchhHHHHHHHHhCcCCE
Confidence 589999999999999999999999998889999977776666553 467899999999999999999999999999
Q ss_pred EEEEEeCCChhhhhhHHHHHHHHhhh--------------------cCCCCEEEEEeCCCCCccc-cCH-----HHHHHH
Q 030504 89 AIIMFDVTARLTYKNVPTWHRDLCRV--------------------CENIPIVLCGNKVDVKNRQ-VKA-----KQVTFH 142 (176)
Q Consensus 89 ~i~v~d~~~~~s~~~~~~~~~~~~~~--------------------~~~~p~liv~nK~Dl~~~~-~~~-----~~~~~~ 142 (176)
+|+|||++++.+++.+..|+..+... .++.|+++|+||+|+.++. ... ....++
T Consensus 81 iIlVyDvtn~~Sf~~l~~W~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~PiilVGnK~Dl~~~r~~~~~~~~~~~~~ia 160 (202)
T cd04102 81 IILVHDLTNRKSSQNLQRWSLEALNKDTFPTGLLVTNGDYDSEQFGGNQIPLLVIGTKLDQIPEKESSGNLVLTARGFVA 160 (202)
T ss_pred EEEEEECcChHHHHHHHHHHHHHHHhhccccccccccccccccccCCCCceEEEEEECccchhhcccchHHHhhHhhhHH
Confidence 99999999999999999999888653 1368999999999997643 222 233678
Q ss_pred HHcCCeEEEeccCCCCC
Q 030504 143 RKKNLQYYEISAKSNYN 159 (176)
Q Consensus 143 ~~~~~~~~~~S~~~~~~ 159 (176)
.+.+++.++.+++++..
T Consensus 161 ~~~~~~~i~~~c~~~~~ 177 (202)
T cd04102 161 EQGNAEEINLNCTNGRL 177 (202)
T ss_pred HhcCCceEEEecCCccc
Confidence 88999999999887664
|
RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown. |
| >cd04160 Arfrp1 Arfrp1 subfamily | Back alignment and domain information |
|---|
Probab=99.98 E-value=2.5e-31 Score=174.11 Aligned_cols=151 Identities=24% Similarity=0.397 Sum_probs=117.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC------CCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccccccccccE
Q 030504 15 KLVIVGDGGTGKTTFVKRHLTGE------FEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQC 88 (176)
Q Consensus 15 ~i~i~G~~~~GKttl~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~ 88 (176)
||+++|++|+|||||++++.... ....+.++.+........ ....+.+|||||++.+...+..++..+|+
T Consensus 1 ~i~~vG~~~~GKstLi~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~----~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~ 76 (167)
T cd04160 1 SVLILGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLNIGTIEV----GNARLKFWDLGGQESLRSLWDKYYAECHA 76 (167)
T ss_pred CEEEEecCCCCHHHHHHHHhhhcccccCCcccccCCccccceEEEEE----CCEEEEEEECCCChhhHHHHHHHhCCCCE
Confidence 68999999999999999976432 223445555554433322 36789999999999999889999999999
Q ss_pred EEEEEeCCChhhhhhHHHHHHHHhhh--cCCCCEEEEEeCCCCCccccCHHHHHHHHH-------cCCeEEEeccCCCCC
Q 030504 89 AIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVTFHRK-------KNLQYYEISAKSNYN 159 (176)
Q Consensus 89 ~i~v~d~~~~~s~~~~~~~~~~~~~~--~~~~p~liv~nK~Dl~~~~~~~~~~~~~~~-------~~~~~~~~S~~~~~~ 159 (176)
+++|+|++++.++.....|+..+.+. ..+.|+++++||+|+.......+...+... .+++++++||++|.|
T Consensus 77 ~v~vvd~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~g 156 (167)
T cd04160 77 IIYVIDSTDRERFEESKSALEKVLRNEALEGVPLLILANKQDLPDALSVEEIKEVFQDKAEEIGRRDCLVLPVSALEGTG 156 (167)
T ss_pred EEEEEECchHHHHHHHHHHHHHHHhChhhcCCCEEEEEEccccccCCCHHHHHHHhccccccccCCceEEEEeeCCCCcC
Confidence 99999999988888888777776553 258999999999998765433333333322 346899999999999
Q ss_pred hHHHHHHHHH
Q 030504 160 FEKPFLYLAR 169 (176)
Q Consensus 160 v~~~~~~l~~ 169 (176)
++++++||+.
T Consensus 157 v~e~~~~l~~ 166 (167)
T cd04160 157 VREGIEWLVE 166 (167)
T ss_pred HHHHHHHHhc
Confidence 9999999974
|
Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development. |
| >cd04156 ARLTS1 ARLTS1 subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.5e-31 Score=172.28 Aligned_cols=151 Identities=19% Similarity=0.314 Sum_probs=118.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccccccccccEEEEEEe
Q 030504 15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFD 94 (176)
Q Consensus 15 ~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d 94 (176)
+|+++|++|||||||++++..+.+.. ..++.+.+..... . ...+.+.+||++|++.+...+..++..+|++++|+|
T Consensus 1 ~i~i~G~~~~GKTsl~~~~~~~~~~~-~~~t~~~~~~~~~--~-~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~iv~v~D 76 (160)
T cd04156 1 QVLLLGLDSAGKSTLLYKLKHAELVT-TIPTVGFNVEMLQ--L-EKHLSLTVWDVGGQEKMRTVWKCYLENTDGLVYVVD 76 (160)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCccc-ccCccCcceEEEE--e-CCceEEEEEECCCCHhHHHHHHHHhccCCEEEEEEE
Confidence 58999999999999999999888754 3567665543322 2 345789999999999988889999999999999999
Q ss_pred CCChhhhhhHHHHHHHHhhh--cCCCCEEEEEeCCCCCccccCHHHHH------HHHHcCCeEEEeccCCCCChHHHHHH
Q 030504 95 VTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVT------FHRKKNLQYYEISAKSNYNFEKPFLY 166 (176)
Q Consensus 95 ~~~~~s~~~~~~~~~~~~~~--~~~~p~liv~nK~Dl~~~~~~~~~~~------~~~~~~~~~~~~S~~~~~~v~~~~~~ 166 (176)
++++.++.....|+..+.+. ..+.|+++|+||+|+.......+... +....++++++|||++|+|++++|++
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~~ 156 (160)
T cd04156 77 SSDEARLDESQKELKHILKNEHIKGVPVVLLANKQDLPGALTAEEITRRFKLKKYCSDRDWYVQPCSAVTGEGLAEAFRK 156 (160)
T ss_pred CCcHHHHHHHHHHHHHHHhchhhcCCCEEEEEECcccccCcCHHHHHHHcCCcccCCCCcEEEEecccccCCChHHHHHH
Confidence 99998888888777766543 25899999999999965322222221 12223467999999999999999999
Q ss_pred HHH
Q 030504 167 LAR 169 (176)
Q Consensus 167 l~~ 169 (176)
|++
T Consensus 157 i~~ 159 (160)
T cd04156 157 LAS 159 (160)
T ss_pred Hhc
Confidence 864
|
ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h |
| >cd04151 Arl1 Arl1 subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.7e-31 Score=170.64 Aligned_cols=150 Identities=21% Similarity=0.324 Sum_probs=115.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccccccccccEEEEEEe
Q 030504 15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFD 94 (176)
Q Consensus 15 ~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d 94 (176)
||+++|++++|||||++++..+.+.. +.++.+.+.... +...+.+.+|||||++.+...+..++..++++++|+|
T Consensus 1 kv~lvG~~~~GKTsl~~~l~~~~~~~-~~~t~~~~~~~~----~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ii~v~d 75 (158)
T cd04151 1 RILILGLDNAGKTTILYRLQLGEVVT-TIPTIGFNVETV----TYKNLKFQVWDLGGQTSIRPYWRCYYSNTDAIIYVVD 75 (158)
T ss_pred CEEEECCCCCCHHHHHHHHccCCCcC-cCCccCcCeEEE----EECCEEEEEEECCCCHHHHHHHHHHhcCCCEEEEEEE
Confidence 68999999999999999987777653 456666554322 2256789999999999999999999999999999999
Q ss_pred CCChhhhhhHHHHHHHHhhh--cCCCCEEEEEeCCCCCccccCHHHHHHH-----HHcCCeEEEeccCCCCChHHHHHHH
Q 030504 95 VTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVTFH-----RKKNLQYYEISAKSNYNFEKPFLYL 167 (176)
Q Consensus 95 ~~~~~s~~~~~~~~~~~~~~--~~~~p~liv~nK~Dl~~~~~~~~~~~~~-----~~~~~~~~~~S~~~~~~v~~~~~~l 167 (176)
++++.++.....++..+.+. ..+.|+++|+||+|+.+.....+..... ...+++++++||+++.|++++|+||
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l 155 (158)
T cd04151 76 STDRDRLGTAKEELHAMLEEEELKGAVLLVFANKQDMPGALSEAEISEKLGLSELKDRTWSIFKTSAIKGEGLDEGMDWL 155 (158)
T ss_pred CCCHHHHHHHHHHHHHHHhchhhcCCcEEEEEeCCCCCCCCCHHHHHHHhCccccCCCcEEEEEeeccCCCCHHHHHHHH
Confidence 99988877666655544332 2579999999999997543222222211 1223579999999999999999999
Q ss_pred HH
Q 030504 168 AR 169 (176)
Q Consensus 168 ~~ 169 (176)
++
T Consensus 156 ~~ 157 (158)
T cd04151 156 VN 157 (158)
T ss_pred hc
Confidence 75
|
Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability. |
| >smart00178 SAR Sar1p-like members of the Ras-family of small GTPases | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.9e-31 Score=174.14 Aligned_cols=156 Identities=17% Similarity=0.280 Sum_probs=121.1
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccccccccccEEE
Q 030504 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (176)
Q Consensus 11 ~~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 90 (176)
.+.++|+++|.+|||||||++++..+.+. .+.|+.+.+..... . ..+.+.+||+||++.++..+..++..+|+++
T Consensus 15 ~~~~~i~ivG~~~~GKTsli~~l~~~~~~-~~~~t~~~~~~~~~--~--~~~~~~~~D~~G~~~~~~~~~~~~~~ad~ii 89 (184)
T smart00178 15 NKHAKILFLGLDNAGKTTLLHMLKNDRLA-QHQPTQHPTSEELA--I--GNIKFTTFDLGGHQQARRLWKDYFPEVNGIV 89 (184)
T ss_pred cccCEEEEECCCCCCHHHHHHHHhcCCCc-ccCCccccceEEEE--E--CCEEEEEEECCCCHHHHHHHHHHhCCCCEEE
Confidence 45699999999999999999998877654 34555554433222 2 4578899999999999999999999999999
Q ss_pred EEEeCCChhhhhhHHHHHHHHhhh--cCCCCEEEEEeCCCCCccccCHHHHHHHH------------HcCCeEEEeccCC
Q 030504 91 IMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVTFHR------------KKNLQYYEISAKS 156 (176)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~--~~~~p~liv~nK~Dl~~~~~~~~~~~~~~------------~~~~~~~~~S~~~ 156 (176)
+|+|++++.++.....++..+.+. ..+.|+++|+||+|+.......+..+... ...+.+++|||++
T Consensus 90 ~vvD~~~~~~~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~~~~~i~~~l~l~~~~~~~~~~~~~~~~i~~~Sa~~ 169 (184)
T smart00178 90 YLVDAYDKERFAESKRELDALLSDEELATVPFLILGNKIDAPYAASEDELRYALGLTNTTGSKGKVGVRPLEVFMCSVVR 169 (184)
T ss_pred EEEECCcHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCCCCHHHHHHHcCCCcccccccccCCceeEEEEeeccc
Confidence 999999999888888777766543 25899999999999975443333332221 1235699999999
Q ss_pred CCChHHHHHHHHHHH
Q 030504 157 NYNFEKPFLYLARKL 171 (176)
Q Consensus 157 ~~~v~~~~~~l~~~i 171 (176)
+.|++++++||..++
T Consensus 170 ~~g~~~~~~wl~~~~ 184 (184)
T smart00178 170 RMGYGEGFKWLSQYI 184 (184)
T ss_pred CCChHHHHHHHHhhC
Confidence 999999999998753
|
Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus. |
| >cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.6e-30 Score=168.91 Aligned_cols=150 Identities=23% Similarity=0.376 Sum_probs=120.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccccccccccEEEEEEe
Q 030504 15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFD 94 (176)
Q Consensus 15 ~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d 94 (176)
||+++|.+|||||||++++..+. ...+.++.+.+...... ..+.+.+||+||++.+...+..+++.+|++++|||
T Consensus 1 ki~iiG~~~~GKssli~~~~~~~-~~~~~~t~~~~~~~~~~----~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~D 75 (158)
T cd00878 1 RILILGLDGAGKTTILYKLKLGE-VVTTIPTIGFNVETVEY----KNVSFTVWDVGGQDKIRPLWKHYYENTNGIIFVVD 75 (158)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCC-CCCCCCCcCcceEEEEE----CCEEEEEEECCCChhhHHHHHHHhccCCEEEEEEE
Confidence 68999999999999999988776 34556777765554433 35789999999999999999999999999999999
Q ss_pred CCChhhhhhHHHHHHHHhhh--cCCCCEEEEEeCCCCCccccCHHHHHHH-----HHcCCeEEEeccCCCCChHHHHHHH
Q 030504 95 VTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVTFH-----RKKNLQYYEISAKSNYNFEKPFLYL 167 (176)
Q Consensus 95 ~~~~~s~~~~~~~~~~~~~~--~~~~p~liv~nK~Dl~~~~~~~~~~~~~-----~~~~~~~~~~S~~~~~~v~~~~~~l 167 (176)
++++.++.....++..+... ..+.|+++++||+|+.......+..... ....++++++||++|.|++++|++|
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~~l 155 (158)
T cd00878 76 SSDRERIEEAKEELHKLLNEEELKGVPLLIFANKQDLPGALSVSELIEKLGLEKILGRRWHIQPCSAVTGDGLDEGLDWL 155 (158)
T ss_pred CCCHHHHHHHHHHHHHHHhCcccCCCcEEEEeeccCCccccCHHHHHHhhChhhccCCcEEEEEeeCCCCCCHHHHHHHH
Confidence 99999999888877766553 2589999999999997654333322222 2245689999999999999999998
Q ss_pred HH
Q 030504 168 AR 169 (176)
Q Consensus 168 ~~ 169 (176)
..
T Consensus 156 ~~ 157 (158)
T cd00878 156 LQ 157 (158)
T ss_pred hh
Confidence 75
|
Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu |
| >KOG0070 consensus GTP-binding ADP-ribosylation factor Arf1 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.5e-30 Score=163.24 Aligned_cols=161 Identities=24% Similarity=0.360 Sum_probs=138.0
Q ss_pred CCCCeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccccccccccE
Q 030504 9 VDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQC 88 (176)
Q Consensus 9 ~~~~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~ 88 (176)
....+.+|+++|..++||||++.++..++.... .||+|+......+ +.+.|.+||.+|+++++..|+.|+++.++
T Consensus 13 ~~~~e~~IlmlGLD~AGKTTILykLk~~E~vtt-vPTiGfnVE~v~y----kn~~f~vWDvGGq~k~R~lW~~Y~~~t~~ 87 (181)
T KOG0070|consen 13 FGKKEMRILMVGLDAAGKTTILYKLKLGEIVTT-VPTIGFNVETVEY----KNISFTVWDVGGQEKLRPLWKHYFQNTQG 87 (181)
T ss_pred cCcceEEEEEEeccCCCceeeeEeeccCCcccC-CCccccceeEEEE----cceEEEEEecCCCcccccchhhhccCCcE
Confidence 456789999999999999999999888888766 8999988888777 68899999999999999999999999999
Q ss_pred EEEEEeCCChhhhhhHHHHHHHHhhhc--CCCCEEEEEeCCCCCccccCHHHHHH-----HHHcCCeEEEeccCCCCChH
Q 030504 89 AIIMFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNRQVKAKQVTF-----HRKKNLQYYEISAKSNYNFE 161 (176)
Q Consensus 89 ~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~liv~nK~Dl~~~~~~~~~~~~-----~~~~~~~~~~~S~~~~~~v~ 161 (176)
+|||+|.+|+..+.++...+..+.... .+.|+++++||.|+++.-...+..+. .+...+.+..|+|.+|+|+.
T Consensus 88 lIfVvDS~Dr~Ri~eak~eL~~~l~~~~l~~~~llv~aNKqD~~~als~~ei~~~L~l~~l~~~~w~iq~~~a~~G~GL~ 167 (181)
T KOG0070|consen 88 LIFVVDSSDRERIEEAKEELHRMLAEPELRNAPLLVFANKQDLPGALSAAEITNKLGLHSLRSRNWHIQSTCAISGEGLY 167 (181)
T ss_pred EEEEEeCCcHHHHHHHHHHHHHHHcCcccCCceEEEEechhhccccCCHHHHHhHhhhhccCCCCcEEeeccccccccHH
Confidence 999999999999988887666665543 58999999999999986655444322 22345788999999999999
Q ss_pred HHHHHHHHHHhcC
Q 030504 162 KPFLYLARKLAGS 174 (176)
Q Consensus 162 ~~~~~l~~~i~~~ 174 (176)
|.++|+.+.+..+
T Consensus 168 egl~wl~~~~~~~ 180 (181)
T KOG0070|consen 168 EGLDWLSNNLKKR 180 (181)
T ss_pred HHHHHHHHHHhcc
Confidence 9999999988764
|
|
| >PLN00023 GTP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.4e-29 Score=175.83 Aligned_cols=140 Identities=21% Similarity=0.390 Sum_probs=119.6
Q ss_pred CCCCCeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEec-------------CcEEEEEEEeCCCccc
Q 030504 8 TVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTN-------------CGKIRFYCWDTAGQEK 74 (176)
Q Consensus 8 ~~~~~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~D~~g~~~ 74 (176)
-++...+||+++|..|||||||+++|..+.+...+.+|+|.++....+.++ +..+.+.+|||+|++.
T Consensus 16 ~~~~~~iKIVLLGdsGVGKTSLI~rf~~g~F~~~~~pTIG~d~~ik~I~~~~~~~~~~~ik~d~~k~v~LqIWDTAGqEr 95 (334)
T PLN00023 16 GPPCGQVRVLVVGDSGVGKSSLVHLIVKGSSIARPPQTIGCTVGVKHITYGSPGSSSNSIKGDSERDFFVELWDVSGHER 95 (334)
T ss_pred CCCccceEEEEECCCCCcHHHHHHHHhcCCcccccCCceeeeEEEEEEEECCcccccccccccCCceEEEEEEECCCChh
Confidence 345678999999999999999999999999988889999988876666553 2568899999999999
Q ss_pred cccccccccccccEEEEEEeCCChhhhhhHHHHHHHHhhhc-------------CCCCEEEEEeCCCCCccc--------
Q 030504 75 FGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-------------ENIPIVLCGNKVDVKNRQ-------- 133 (176)
Q Consensus 75 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~-------------~~~p~liv~nK~Dl~~~~-------- 133 (176)
++.++..++++++++|+|||+++..+++.+..|+..+.... .+.|+++|+||+||..+.
T Consensus 96 frsL~~~yyr~AdgiILVyDITdr~SFenL~kWl~eI~~~~~~s~p~~s~~~~~~~ipIILVGNK~DL~~~~~~r~~s~~ 175 (334)
T PLN00023 96 YKDCRSLFYSQINGVIFVHDLSQRRTKTSLQKWASEVAATGTFSAPLGSGGPGGLPVPYIVIGNKADIAPKEGTRGSSGN 175 (334)
T ss_pred hhhhhHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcccccccccccccCCCCcEEEEEECccccccccccccccc
Confidence 99999999999999999999999999999999999887652 248999999999996532
Q ss_pred cCHHHHHHHHHcCC
Q 030504 134 VKAKQVTFHRKKNL 147 (176)
Q Consensus 134 ~~~~~~~~~~~~~~ 147 (176)
..++...+++++++
T Consensus 176 ~~e~a~~~A~~~g~ 189 (334)
T PLN00023 176 LVDAARQWVEKQGL 189 (334)
T ss_pred cHHHHHHHHHHcCC
Confidence 23456788888774
|
|
| >cd01890 LepA LepA subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=2e-29 Score=166.85 Aligned_cols=155 Identities=16% Similarity=0.207 Sum_probs=115.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC-------CCCcccc------ceeEEEeEEEEEe-----cCcEEEEEEEeCCCccccc
Q 030504 15 KLVIVGDGGTGKTTFVKRHLTGE-------FEKKYEP------TIGVEVHPLDFFT-----NCGKIRFYCWDTAGQEKFG 76 (176)
Q Consensus 15 ~i~i~G~~~~GKttl~~~~~~~~-------~~~~~~~------~~~~~~~~~~~~~-----~~~~~~~~~~D~~g~~~~~ 76 (176)
+|+++|.+++|||||+++|+... +...+.+ +.|.+........ ++..+.+.+|||||++.+.
T Consensus 2 ni~~vG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~ 81 (179)
T cd01890 2 NFSIIAHIDHGKSTLADRLLELTGTVSKREMKEQVLDSMDLERERGITIKAQTVRLNYKAKDGQEYLLNLIDTPGHVDFS 81 (179)
T ss_pred cEEEEeecCCCHHHHHHHHHHHhCCCCcCCCceEeccCChhHHHCCCeEecceEEEEEecCCCCcEEEEEEECCCChhhH
Confidence 79999999999999999987632 1112222 2344444333322 5677889999999999999
Q ss_pred cccccccccccEEEEEEeCCChhhhhhHHHHHHHHhhhcCCCCEEEEEeCCCCCccccCHHHHHHHHHcCC---eEEEec
Q 030504 77 GLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNL---QYYEIS 153 (176)
Q Consensus 77 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~~~~~~~~~~~~~~~~~~---~~~~~S 153 (176)
..+..+++.+|++++|+|+++..+.+....|.... . .+.|+++|+||+|+.+........++++..++ .++++|
T Consensus 82 ~~~~~~~~~ad~~i~v~D~~~~~~~~~~~~~~~~~-~--~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~S 158 (179)
T cd01890 82 YEVSRSLAACEGALLLVDATQGVEAQTLANFYLAL-E--NNLEIIPVINKIDLPSADPERVKQQIEDVLGLDPSEAILVS 158 (179)
T ss_pred HHHHHHHHhcCeEEEEEECCCCccHhhHHHHHHHH-H--cCCCEEEEEECCCCCcCCHHHHHHHHHHHhCCCcccEEEee
Confidence 88889999999999999999876666665554332 2 37899999999998653322223345555555 489999
Q ss_pred cCCCCChHHHHHHHHHHHh
Q 030504 154 AKSNYNFEKPFLYLARKLA 172 (176)
Q Consensus 154 ~~~~~~v~~~~~~l~~~i~ 172 (176)
|++|.|++++|+++++.+.
T Consensus 159 a~~g~gi~~l~~~l~~~~~ 177 (179)
T cd01890 159 AKTGLGVEDLLEAIVERIP 177 (179)
T ss_pred ccCCCCHHHHHHHHHhhCC
Confidence 9999999999999998764
|
LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype. |
| >PTZ00099 rab6; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=9.5e-29 Score=162.49 Aligned_cols=140 Identities=29% Similarity=0.530 Sum_probs=122.6
Q ss_pred CCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccccccccccEEEEEEeCCChhhhhhHHHHHHHHhhhc
Q 030504 36 GEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC 115 (176)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~ 115 (176)
+.|.+.+.+|.|.++....+.+++..+.+.+|||+|++++...+..+++.+|++|+|||++++.+|+.+..|+..+....
T Consensus 3 ~~F~~~~~~Tig~~~~~~~~~~~~~~v~l~iwDt~G~e~~~~~~~~~~~~ad~~ilv~D~t~~~sf~~~~~w~~~i~~~~ 82 (176)
T PTZ00099 3 DTFDNNYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNER 82 (176)
T ss_pred CCcCCCCCCccceEEEEEEEEECCEEEEEEEEECCChHHhhhccHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhc
Confidence 56777889999999988888888889999999999999999999999999999999999999999999999998886553
Q ss_pred -CCCCEEEEEeCCCCCcc-c-cCHHHHHHHHHcCCeEEEeccCCCCChHHHHHHHHHHHhcCC
Q 030504 116 -ENIPIVLCGNKVDVKNR-Q-VKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGST 175 (176)
Q Consensus 116 -~~~p~liv~nK~Dl~~~-~-~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l~~~i~~~~ 175 (176)
++.|+++|+||+|+... . ...+...+++..++.++++||++|.|++++|.||++.+.+.+
T Consensus 83 ~~~~piilVgNK~DL~~~~~v~~~e~~~~~~~~~~~~~e~SAk~g~nV~~lf~~l~~~l~~~~ 145 (176)
T PTZ00099 83 GKDVIIALVGNKTDLGDLRKVTYEEGMQKAQEYNTMFHETSAKAGHNIKVLFKKIAAKLPNLD 145 (176)
T ss_pred CCCCeEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHHHhcc
Confidence 57899999999999642 2 233456778888999999999999999999999999987654
|
|
| >cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans | Back alignment and domain information |
|---|
Probab=99.97 E-value=9.9e-29 Score=161.96 Aligned_cols=155 Identities=15% Similarity=0.124 Sum_probs=108.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccc---------ccccc
Q 030504 15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRD---------GYYIH 85 (176)
Q Consensus 15 ~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~---------~~~~~ 85 (176)
+|+++|.+|+|||||++++..+.+... +..+.+............+.+.+|||||+.......+ .....
T Consensus 2 ~i~~~G~~~~GKssli~~l~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~ 79 (168)
T cd01897 2 TLVIAGYPNVGKSSLVNKLTRAKPEVA--PYPFTTKSLFVGHFDYKYLRWQVIDTPGLLDRPLEERNTIEMQAITALAHL 79 (168)
T ss_pred eEEEEcCCCCCHHHHHHHHhcCCCccC--CCCCcccceeEEEEccCceEEEEEECCCcCCccccCCchHHHHHHHHHHhc
Confidence 799999999999999999888766422 1112222222222333567899999999843111100 11123
Q ss_pred ccEEEEEEeCCChhhh--hhHHHHHHHHhhhcCCCCEEEEEeCCCCCccccCHHHHHHHHHcCCeEEEeccCCCCChHHH
Q 030504 86 GQCAIIMFDVTARLTY--KNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKP 163 (176)
Q Consensus 86 ~~~~i~v~d~~~~~s~--~~~~~~~~~~~~~~~~~p~liv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~ 163 (176)
+|++++|+|+++..++ +....|+..+.....+.|+++|+||+|+.......+...+.+..+++++++||++|.|++++
T Consensus 80 ~d~~l~v~d~~~~~~~~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l 159 (168)
T cd01897 80 RAAVLFLFDPSETCGYSLEEQLSLFEEIKPLFKNKPVIVVLNKIDLLTFEDLSEIEEEEELEGEEVLKISTLTEEGVDEV 159 (168)
T ss_pred cCcEEEEEeCCcccccchHHHHHHHHHHHhhcCcCCeEEEEEccccCchhhHHHHHHhhhhccCceEEEEecccCCHHHH
Confidence 6899999999987643 55556777776555689999999999997644333344555556789999999999999999
Q ss_pred HHHHHHHH
Q 030504 164 FLYLARKL 171 (176)
Q Consensus 164 ~~~l~~~i 171 (176)
|+++++.+
T Consensus 160 ~~~l~~~~ 167 (168)
T cd01897 160 KNKACELL 167 (168)
T ss_pred HHHHHHHh
Confidence 99999876
|
NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins. |
| >KOG0096 consensus GTPase Ran/TC4/GSP1 (nuclear protein transport pathway), small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.7e-29 Score=160.50 Aligned_cols=166 Identities=81% Similarity=1.295 Sum_probs=156.5
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccccccccccEEE
Q 030504 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (176)
Q Consensus 11 ~~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 90 (176)
...++++++|..|.||||++++++.|+|...+.++.|.+.....+..+...+.|..|||.|+|.+......++-++.++|
T Consensus 8 ~~~fklvlvGdgg~gKtt~vkr~ltgeFe~~y~at~Gv~~~pl~f~tn~g~irf~~wdtagqEk~gglrdgyyI~~qcAi 87 (216)
T KOG0096|consen 8 GLTFKLVLVGDGGTGKTTFVKRHLTGEFEKTYPATLGVEVHPLLFDTNRGQIRFNVWDTAGQEKKGGLRDGYYIQGQCAI 87 (216)
T ss_pred cceEEEEEecCCcccccchhhhhhcccceecccCcceeEEeeeeeecccCcEEEEeeecccceeecccccccEEecceeE
Confidence 67899999999999999999999999999999999999999988876666799999999999999999999999999999
Q ss_pred EEEeCCChhhhhhHHHHHHHHhhhcCCCCEEEEEeCCCCCccccCHHHHHHHHHcCCeEEEeccCCCCChHHHHHHHHHH
Q 030504 91 IMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARK 170 (176)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l~~~ 170 (176)
++||+..+..+.++..|...+...+.++|+++++||.|...+....+...+-+..++.|++.|++.+-|++.-|-|++++
T Consensus 88 imFdVtsr~t~~n~~rwhrd~~rv~~NiPiv~cGNKvDi~~r~~k~k~v~~~rkknl~y~~iSaksn~NfekPFl~LarK 167 (216)
T KOG0096|consen 88 IMFDVTSRFTYKNVPRWHRDLVRVRENIPIVLCGNKVDIKARKVKAKPVSFHRKKNLQYYEISAKSNYNFERPFLWLARK 167 (216)
T ss_pred EEeeeeehhhhhcchHHHHHHHHHhcCCCeeeeccceeccccccccccceeeecccceeEEeecccccccccchHHHhhh
Confidence 99999999999999999999999999999999999999998887788888999999999999999999999999999999
Q ss_pred HhcCCC
Q 030504 171 LAGSTD 176 (176)
Q Consensus 171 i~~~~~ 176 (176)
+..+|+
T Consensus 168 l~G~p~ 173 (216)
T KOG0096|consen 168 LTGDPS 173 (216)
T ss_pred hcCCCC
Confidence 987764
|
|
| >cd04159 Arl10_like Arl10-like subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.1e-29 Score=161.23 Aligned_cols=150 Identities=24% Similarity=0.426 Sum_probs=120.1
Q ss_pred EEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccccccccccEEEEEEeC
Q 030504 16 LVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDV 95 (176)
Q Consensus 16 i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~ 95 (176)
|+++|++|||||||++++..+.+...+.++.+....... . ..+.+.+||+||++.+...+..++..+|++++|+|+
T Consensus 2 i~i~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~--~--~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~ 77 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAGGQFSEDTIPTVGFNMRKVT--K--GNVTLKVWDLGGQPRFRSMWERYCRGVNAIVYVVDA 77 (159)
T ss_pred EEEEcCCCCCHHHHHHHHccCCCCcCccCCCCcceEEEE--E--CCEEEEEEECCCCHhHHHHHHHHHhcCCEEEEEEEC
Confidence 789999999999999999998888888888876554322 2 337899999999999999999999999999999999
Q ss_pred CChhhhhhHHHHHHHHhhh--cCCCCEEEEEeCCCCCccccCHHHHHH-----HHHcCCeEEEeccCCCCChHHHHHHHH
Q 030504 96 TARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVTF-----HRKKNLQYYEISAKSNYNFEKPFLYLA 168 (176)
Q Consensus 96 ~~~~s~~~~~~~~~~~~~~--~~~~p~liv~nK~Dl~~~~~~~~~~~~-----~~~~~~~~~~~S~~~~~~v~~~~~~l~ 168 (176)
++..++.....++..+... ..+.|+++|+||.|+.......+.... .....++++++|++++.|++++++++.
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~ 157 (159)
T cd04159 78 ADRTALEAAKNELHDLLEKPSLEGIPLLVLGNKNDLPGALSVDELIEQMNLKSITDREVSCYSISCKEKTNIDIVLDWLI 157 (159)
T ss_pred CCHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCCcCHHHHHHHhCcccccCCceEEEEEEeccCCChHHHHHHHh
Confidence 9998888777766666543 258899999999998764332222211 122346899999999999999999987
Q ss_pred H
Q 030504 169 R 169 (176)
Q Consensus 169 ~ 169 (176)
+
T Consensus 158 ~ 158 (159)
T cd04159 158 K 158 (159)
T ss_pred h
Confidence 5
|
Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved. |
| >cd04155 Arl3 Arl3 subfamily | Back alignment and domain information |
|---|
Probab=99.96 E-value=5.2e-29 Score=164.03 Aligned_cols=155 Identities=17% Similarity=0.320 Sum_probs=116.8
Q ss_pred CCCeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccccccccccEE
Q 030504 10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCA 89 (176)
Q Consensus 10 ~~~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~ 89 (176)
..+.++|+++|++|||||||++++....+. .+.++.|.+...... .+..+.+||++|+..+...+..+++.++++
T Consensus 11 ~~~~~~v~i~G~~g~GKStLl~~l~~~~~~-~~~~t~g~~~~~i~~----~~~~~~~~D~~G~~~~~~~~~~~~~~~~~i 85 (173)
T cd04155 11 SSEEPRILILGLDNAGKTTILKQLASEDIS-HITPTQGFNIKTVQS----DGFKLNVWDIGGQRAIRPYWRNYFENTDCL 85 (173)
T ss_pred cCCccEEEEEccCCCCHHHHHHHHhcCCCc-ccCCCCCcceEEEEE----CCEEEEEEECCCCHHHHHHHHHHhcCCCEE
Confidence 345899999999999999999997765443 356666654443332 356789999999988888888889999999
Q ss_pred EEEEeCCChhhhhhHHHHHHHHhhh--cCCCCEEEEEeCCCCCccccCHHHHHHHHH-----cCCeEEEeccCCCCChHH
Q 030504 90 IIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVTFHRK-----KNLQYYEISAKSNYNFEK 162 (176)
Q Consensus 90 i~v~d~~~~~s~~~~~~~~~~~~~~--~~~~p~liv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~S~~~~~~v~~ 162 (176)
++|+|+++..++.....++..+... ..+.|+++++||+|+.+.....+..+.... ..+.++++||++|+|+++
T Consensus 86 i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~i~~~l~~~~~~~~~~~~~~~Sa~~~~gi~~ 165 (173)
T cd04155 86 IYVIDSADKKRLEEAGAELVELLEEEKLAGVPVLVFANKQDLATAAPAEEIAEALNLHDLRDRTWHIQACSAKTGEGLQE 165 (173)
T ss_pred EEEEeCCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECCCCccCCCHHHHHHHcCCcccCCCeEEEEEeECCCCCCHHH
Confidence 9999999988888777666555433 247999999999998754322222221111 123578999999999999
Q ss_pred HHHHHHH
Q 030504 163 PFLYLAR 169 (176)
Q Consensus 163 ~~~~l~~ 169 (176)
+|+||++
T Consensus 166 ~~~~l~~ 172 (173)
T cd04155 166 GMNWVCK 172 (173)
T ss_pred HHHHHhc
Confidence 9999976
|
Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation. |
| >KOG4252 consensus GTP-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.96 E-value=9.1e-31 Score=165.05 Aligned_cols=163 Identities=32% Similarity=0.571 Sum_probs=150.3
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccccccccccEEE
Q 030504 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (176)
Q Consensus 11 ~~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 90 (176)
...+|++|+|..++||||++++|..|-|...+..++|+++......+....+...+||++|++++..+..+||+++.+.+
T Consensus 18 e~aiK~vivGng~VGKssmiqryCkgifTkdykktIgvdflerqi~v~~Edvr~mlWdtagqeEfDaItkAyyrgaqa~v 97 (246)
T KOG4252|consen 18 ERAIKFVIVGNGSVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIKVLIEDVRSMLWDTAGQEEFDAITKAYYRGAQASV 97 (246)
T ss_pred hhhEEEEEECCCccchHHHHHHHhccccccccccccchhhhhHHHHhhHHHHHHHHHHhccchhHHHHHHHHhccccceE
Confidence 46799999999999999999999999999999999999988888888778888899999999999999999999999999
Q ss_pred EEEeCCChhhhhhHHHHHHHHhhhcCCCCEEEEEeCCCCCcccc--CHHHHHHHHHcCCeEEEeccCCCCChHHHHHHHH
Q 030504 91 IMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQV--KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLA 168 (176)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l~ 168 (176)
+||+.+|+.+|+....|.+.+...+..+|.++|-||.|+..+.. ..+...+++.+++.++.+|++...|+..+|.+|+
T Consensus 98 LVFSTTDr~SFea~~~w~~kv~~e~~~IPtV~vqNKIDlveds~~~~~evE~lak~l~~RlyRtSvked~NV~~vF~YLa 177 (246)
T KOG4252|consen 98 LVFSTTDRYSFEATLEWYNKVQKETERIPTVFVQNKIDLVEDSQMDKGEVEGLAKKLHKRLYRTSVKEDFNVMHVFAYLA 177 (246)
T ss_pred EEEecccHHHHHHHHHHHHHHHHHhccCCeEEeeccchhhHhhhcchHHHHHHHHHhhhhhhhhhhhhhhhhHHHHHHHH
Confidence 99999999999999999999999889999999999999986443 3346688999999999999999999999999999
Q ss_pred HHHhc
Q 030504 169 RKLAG 173 (176)
Q Consensus 169 ~~i~~ 173 (176)
.++.+
T Consensus 178 eK~~q 182 (246)
T KOG4252|consen 178 EKLTQ 182 (246)
T ss_pred HHHHH
Confidence 88754
|
|
| >KOG0071 consensus GTP-binding ADP-ribosylation factor Arf6 (dArf3) [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.9e-28 Score=147.77 Aligned_cols=158 Identities=21% Similarity=0.317 Sum_probs=132.7
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccccccccccEEE
Q 030504 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (176)
Q Consensus 11 ~~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 90 (176)
..+++|+.+|..++||||++..+..+.. ....||.|+.....++ +.+.|.+||.+|+.+.+.+|++|+.+..++|
T Consensus 15 ~KE~~ilmlGLd~aGKTtiLyKLkl~~~-~~~ipTvGFnvetVty----kN~kfNvwdvGGqd~iRplWrhYy~gtqglI 89 (180)
T KOG0071|consen 15 NKEMRILMLGLDAAGKTTILYKLKLGQS-VTTIPTVGFNVETVTY----KNVKFNVWDVGGQDKIRPLWRHYYTGTQGLI 89 (180)
T ss_pred cccceEEEEecccCCceehhhHHhcCCC-cccccccceeEEEEEe----eeeEEeeeeccCchhhhHHHHhhccCCceEE
Confidence 4689999999999999999999655544 4568899988777766 8889999999999999999999999999999
Q ss_pred EEEeCCChhhhhhHHHHHHHHhhh--cCCCCEEEEEeCCCCCccccCHHHHHH-----HHHcCCeEEEeccCCCCChHHH
Q 030504 91 IMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVTF-----HRKKNLQYYEISAKSNYNFEKP 163 (176)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~--~~~~p~liv~nK~Dl~~~~~~~~~~~~-----~~~~~~~~~~~S~~~~~~v~~~ 163 (176)
||+|..++...++++..+..+... ..+.|+++.+||.|+++....++...+ ++...+-+..+|+.+|+|+.|-
T Consensus 90 FV~Dsa~~dr~eeAr~ELh~ii~~~em~~~~~LvlANkQDlp~A~~pqei~d~leLe~~r~~~W~vqp~~a~~gdgL~eg 169 (180)
T KOG0071|consen 90 FVVDSADRDRIEEARNELHRIINDREMRDAIILILANKQDLPDAMKPQEIQDKLELERIRDRNWYVQPSCALSGDGLKEG 169 (180)
T ss_pred EEEeccchhhHHHHHHHHHHHhCCHhhhcceEEEEecCcccccccCHHHHHHHhccccccCCccEeeccccccchhHHHH
Confidence 999999998888887655555433 258899999999999987776665433 4456688999999999999999
Q ss_pred HHHHHHHHhc
Q 030504 164 FLYLARKLAG 173 (176)
Q Consensus 164 ~~~l~~~i~~ 173 (176)
|.|+...+.+
T Consensus 170 lswlsnn~~~ 179 (180)
T KOG0071|consen 170 LSWLSNNLKE 179 (180)
T ss_pred HHHHHhhccC
Confidence 9999988764
|
|
| >cd01898 Obg Obg subfamily | Back alignment and domain information |
|---|
Probab=99.96 E-value=9e-28 Score=157.69 Aligned_cols=153 Identities=15% Similarity=0.113 Sum_probs=107.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEE--EEEecCcEEEEEEEeCCCccc----cccccccc---ccc
Q 030504 15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPL--DFFTNCGKIRFYCWDTAGQEK----FGGLRDGY---YIH 85 (176)
Q Consensus 15 ~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~D~~g~~~----~~~~~~~~---~~~ 85 (176)
+|+++|.+|||||||++++........ ...+.+.... ..... ....+.+|||||+.. .+.+...+ +..
T Consensus 2 ~v~ivG~~~~GKStl~~~l~~~~~~v~--~~~~~t~~~~~~~~~~~-~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~ 78 (170)
T cd01898 2 DVGLVGLPNAGKSTLLSAISNAKPKIA--DYPFTTLVPNLGVVRVD-DGRSFVVADIPGLIEGASEGKGLGHRFLRHIER 78 (170)
T ss_pred CeEEECCCCCCHHHHHHHHhcCCcccc--CCCccccCCcceEEEcC-CCCeEEEEecCcccCcccccCCchHHHHHHHHh
Confidence 689999999999999999875443211 1111111111 12222 224789999999642 22233333 345
Q ss_pred ccEEEEEEeCCCh-hhhhhHHHHHHHHhhhc---CCCCEEEEEeCCCCCccccCHH-HHHHHHH-cCCeEEEeccCCCCC
Q 030504 86 GQCAIIMFDVTAR-LTYKNVPTWHRDLCRVC---ENIPIVLCGNKVDVKNRQVKAK-QVTFHRK-KNLQYYEISAKSNYN 159 (176)
Q Consensus 86 ~~~~i~v~d~~~~-~s~~~~~~~~~~~~~~~---~~~p~liv~nK~Dl~~~~~~~~-~~~~~~~-~~~~~~~~S~~~~~~ 159 (176)
+|++++|+|++++ .+++.+..|.+.+.... .+.|+++|+||+|+.++....+ ...+... .+.+++++|++++.|
T Consensus 79 ~d~vi~v~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g 158 (170)
T cd01898 79 TRLLLHVIDLSGDDDPVEDYKTIRNELELYNPELLEKPRIVVLNKIDLLDEEELFELLKELLKELWGKPVFPISALTGEG 158 (170)
T ss_pred CCEEEEEEecCCCCCHHHHHHHHHHHHHHhCccccccccEEEEEchhcCCchhhHHHHHHHHhhCCCCCEEEEecCCCCC
Confidence 9999999999998 78888888888776653 3789999999999976544333 3344444 378899999999999
Q ss_pred hHHHHHHHHHH
Q 030504 160 FEKPFLYLARK 170 (176)
Q Consensus 160 v~~~~~~l~~~ 170 (176)
++++|+++++.
T Consensus 159 i~~l~~~i~~~ 169 (170)
T cd01898 159 LDELLRKLAEL 169 (170)
T ss_pred HHHHHHHHHhh
Confidence 99999999875
|
The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain. |
| >TIGR00231 small_GTP small GTP-binding protein domain | Back alignment and domain information |
|---|
Probab=99.96 E-value=5.5e-27 Score=151.88 Aligned_cols=156 Identities=27% Similarity=0.462 Sum_probs=124.8
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccccccccccEEEEE
Q 030504 13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIM 92 (176)
Q Consensus 13 ~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 92 (176)
.+||+++|.+|+|||||++++..+.+...+.++.+.+........++..+.+.+||+||++.+...+..+..+++.++.+
T Consensus 1 ~~ki~~~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~~ 80 (161)
T TIGR00231 1 EIKIVIVGDPNVGKSTLLNRLLGNKFITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQEDYRAIRRLYYRAVESSLRV 80 (161)
T ss_pred CeEEEEECCCCCCHHHHHHHHhCCCCcCcCCCCceeeeeEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhhhEEEEE
Confidence 47999999999999999999998887777777777777666666666668899999999999888888888999999999
Q ss_pred EeCCCh-hhhhhHH-HHHHHHhhhcC-CCCEEEEEeCCCCCccccCHHHHHHHHH-cCCeEEEeccCCCCChHHHHHHHH
Q 030504 93 FDVTAR-LTYKNVP-TWHRDLCRVCE-NIPIVLCGNKVDVKNRQVKAKQVTFHRK-KNLQYYEISAKSNYNFEKPFLYLA 168 (176)
Q Consensus 93 ~d~~~~-~s~~~~~-~~~~~~~~~~~-~~p~liv~nK~Dl~~~~~~~~~~~~~~~-~~~~~~~~S~~~~~~v~~~~~~l~ 168 (176)
+|.... .++.... .|...+..... +.|+++++||+|+............... ...+++++||+++.|++++|++|.
T Consensus 81 ~d~~~~v~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~gv~~~~~~l~ 160 (161)
T TIGR00231 81 FDIVILVLDVEEILEKQTKEIIHHAESNVPIILVGNKIDLRDAKLKTHVAFLFAKLNGEPIIPLSAETGKNIDSAFKIVE 160 (161)
T ss_pred EEEeeeehhhhhHhHHHHHHHHHhcccCCcEEEEEEcccCCcchhhHHHHHHHhhccCCceEEeecCCCCCHHHHHHHhh
Confidence 999877 5665554 55555555444 8899999999999775544443333333 456899999999999999999874
|
This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model. |
| >TIGR02528 EutP ethanolamine utilization protein, EutP | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.4e-27 Score=152.40 Aligned_cols=133 Identities=20% Similarity=0.227 Sum_probs=97.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCcc-----ccccccccccccccEE
Q 030504 15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE-----KFGGLRDGYYIHGQCA 89 (176)
Q Consensus 15 ~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~-----~~~~~~~~~~~~~~~~ 89 (176)
||+++|.+|||||||++++..+.+. +.++.+.++. -.+|||||.. .+..... .++++|++
T Consensus 2 kv~liG~~~vGKSsL~~~l~~~~~~--~~~t~~~~~~------------~~~iDt~G~~~~~~~~~~~~~~-~~~~ad~v 66 (142)
T TIGR02528 2 RIMFIGSVGCGKTTLTQALQGEEIL--YKKTQAVEYN------------DGAIDTPGEYVENRRLYSALIV-TAADADVI 66 (142)
T ss_pred eEEEECCCCCCHHHHHHHHcCCccc--cccceeEEEc------------CeeecCchhhhhhHHHHHHHHH-HhhcCCEE
Confidence 8999999999999999998876542 3344332221 1689999972 2333333 47899999
Q ss_pred EEEEeCCChhhhhhHHHHHHHHhhhcCCCCEEEEEeCCCCCccccC-HHHHHHHHHcCC-eEEEeccCCCCChHHHHHHH
Q 030504 90 IIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVK-AKQVTFHRKKNL-QYYEISAKSNYNFEKPFLYL 167 (176)
Q Consensus 90 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~~~~~~-~~~~~~~~~~~~-~~~~~S~~~~~~v~~~~~~l 167 (176)
++|||++++.++... .|.... ..|+++|+||+|+.++... ++..++++..+. +++++||++|.|++++|+++
T Consensus 67 ilv~d~~~~~s~~~~-~~~~~~-----~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l 140 (142)
T TIGR02528 67 ALVQSATDPESRFPP-GFASIF-----VKPVIGLVTKIDLAEADVDIERAKELLETAGAEPIFEISSVDEQGLEALVDYL 140 (142)
T ss_pred EEEecCCCCCcCCCh-hHHHhc-----cCCeEEEEEeeccCCcccCHHHHHHHHHHcCCCcEEEEecCCCCCHHHHHHHH
Confidence 999999999887653 343322 3499999999999754333 334566667666 79999999999999999998
Q ss_pred H
Q 030504 168 A 168 (176)
Q Consensus 168 ~ 168 (176)
+
T Consensus 141 ~ 141 (142)
T TIGR02528 141 N 141 (142)
T ss_pred h
Confidence 5
|
This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site. |
| >cd04171 SelB SelB subfamily | Back alignment and domain information |
|---|
Probab=99.95 E-value=6.1e-27 Score=152.80 Aligned_cols=153 Identities=14% Similarity=0.044 Sum_probs=102.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcC---CCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccccccccccEEE
Q 030504 14 FKLVIVGDGGTGKTTFVKRHLTG---EFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (176)
Q Consensus 14 ~~i~i~G~~~~GKttl~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 90 (176)
..|+++|.++||||||++++... .+...+.++...+.......... ...+.+|||||++++......++.++|+++
T Consensus 1 ~~i~i~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~DtpG~~~~~~~~~~~~~~ad~ii 79 (164)
T cd04171 1 MIIGTAGHIDHGKTTLIKALTGIETDRLPEEKKRGITIDLGFAYLDLPS-GKRLGFIDVPGHEKFIKNMLAGAGGIDLVL 79 (164)
T ss_pred CEEEEEecCCCCHHHHHHHHhCcccccchhhhccCceEEeeeEEEEecC-CcEEEEEECCChHHHHHHHHhhhhcCCEEE
Confidence 36899999999999999998743 23322223222233333333331 457899999999988766667788999999
Q ss_pred EEEeCCChhhhhhHHHHHHHHhhhcCCCCEEEEEeCCCCCcccc----CHHHHHHHHH---cCCeEEEeccCCCCChHHH
Q 030504 91 IMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQV----KAKQVTFHRK---KNLQYYEISAKSNYNFEKP 163 (176)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~~~~~----~~~~~~~~~~---~~~~~~~~S~~~~~~v~~~ 163 (176)
+|+|+++....+ ....+..+... ...|+++++||+|+..... ..+..+.++. .+.+++++|++++.|++++
T Consensus 80 ~V~d~~~~~~~~-~~~~~~~~~~~-~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l 157 (164)
T cd04171 80 LVVAADEGIMPQ-TREHLEILELL-GIKRGLVVLTKADLVDEDWLELVEEEIRELLAGTFLADAPIFPVSAVTGEGIEEL 157 (164)
T ss_pred EEEECCCCccHh-HHHHHHHHHHh-CCCcEEEEEECccccCHHHHHHHHHHHHHHHHhcCcCCCcEEEEeCCCCcCHHHH
Confidence 999998732111 11111222221 2349999999999975421 1223344444 4679999999999999999
Q ss_pred HHHHHH
Q 030504 164 FLYLAR 169 (176)
Q Consensus 164 ~~~l~~ 169 (176)
++++.+
T Consensus 158 ~~~l~~ 163 (164)
T cd04171 158 KEYLDE 163 (164)
T ss_pred HHHHhh
Confidence 998764
|
SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo |
| >COG1100 GTPase SAR1 and related small G proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.7e-26 Score=157.46 Aligned_cols=162 Identities=35% Similarity=0.536 Sum_probs=133.5
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccccccccccEEEE
Q 030504 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAII 91 (176)
Q Consensus 12 ~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~ 91 (176)
..+||+++|++|||||||+++|..+.+...+.++.+..............+.+.+|||+|+++++..+..++.+++++++
T Consensus 4 ~~~kivv~G~~g~GKTtl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~gq~~~~~~~~~y~~~~~~~l~ 83 (219)
T COG1100 4 KEFKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPYRRNIKLQLWDTAGQEEYRSLRPEYYRGANGILI 83 (219)
T ss_pred ceEEEEEEcCCCccHHHHHHHHhcCcCcccCCCceeeeeEEEEEEeCCCEEEEEeecCCCHHHHHHHHHHHhcCCCEEEE
Confidence 34999999999999999999999999999999998877777776666568899999999999999999999999999999
Q ss_pred EEeCCCh-hhhhhHHHHHHHHhhhc-CCCCEEEEEeCCCCCccccCH-------------H-HHHHHHH---cCCeEEEe
Q 030504 92 MFDVTAR-LTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNRQVKA-------------K-QVTFHRK---KNLQYYEI 152 (176)
Q Consensus 92 v~d~~~~-~s~~~~~~~~~~~~~~~-~~~p~liv~nK~Dl~~~~~~~-------------~-~~~~~~~---~~~~~~~~ 152 (176)
|+|..+. .+++....|...+.... .+.|+++++||+|+..+.... . ....... ....++++
T Consensus 84 ~~d~~~~~~~~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (219)
T COG1100 84 VYDSTLRESSDELTEEWLEELRELAPDDVPILLVGNKIDLFDEQSSSEEILNQLNREVVLLVLAPKAVLPEVANPALLET 163 (219)
T ss_pred EEecccchhhhHHHHHHHHHHHHhCCCCceEEEEecccccccchhHHHHHHhhhhcCcchhhhHhHHhhhhhcccceeEe
Confidence 9999994 55566678888888876 479999999999998754211 1 1111111 23349999
Q ss_pred ccC--CCCChHHHHHHHHHHHhc
Q 030504 153 SAK--SNYNFEKPFLYLARKLAG 173 (176)
Q Consensus 153 S~~--~~~~v~~~~~~l~~~i~~ 173 (176)
|++ .+.++.++|..+...+.+
T Consensus 164 s~~~~~~~~v~~~~~~~~~~~~~ 186 (219)
T COG1100 164 SAKSLTGPNVNELFKELLRKLLE 186 (219)
T ss_pred ecccCCCcCHHHHHHHHHHHHHH
Confidence 999 999999999999988754
|
|
| >cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.8e-27 Score=157.80 Aligned_cols=146 Identities=16% Similarity=0.206 Sum_probs=107.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc--CCCCCcc------------ccceeEEEeEEEEEecCcEEEEEEEeCCCcccccccc
Q 030504 14 FKLVIVGDGGTGKTTFVKRHLT--GEFEKKY------------EPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLR 79 (176)
Q Consensus 14 ~~i~i~G~~~~GKttl~~~~~~--~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~ 79 (176)
.+|+++|.+++|||||+++++. +.+...+ ..+.|.+.......++...+.+.+|||||++++...+
T Consensus 3 r~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~ 82 (194)
T cd01891 3 RNIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVTYKDTKINIVDTPGHADFGGEV 82 (194)
T ss_pred cEEEEEecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeEEEECCEEEEEEECCCcHHHHHHH
Confidence 5899999999999999999886 5554332 2345666666666666677899999999999999999
Q ss_pred ccccccccEEEEEEeCCChhhhhhHHHHHHHHhhhcCCCCEEEEEeCCCCCcccc---CHHHHHHHH-------HcCCeE
Q 030504 80 DGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQV---KAKQVTFHR-------KKNLQY 149 (176)
Q Consensus 80 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~~~~~---~~~~~~~~~-------~~~~~~ 149 (176)
..+++++|++++|+|+++.. +.....++..+.. .+.|+++|+||+|+..... ..+..+++. ..++++
T Consensus 83 ~~~~~~~d~~ilV~d~~~~~-~~~~~~~~~~~~~--~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 159 (194)
T cd01891 83 ERVLSMVDGVLLLVDASEGP-MPQTRFVLKKALE--LGLKPIVVINKIDRPDARPEEVVDEVFDLFIELGATEEQLDFPV 159 (194)
T ss_pred HHHHHhcCEEEEEEECCCCc-cHHHHHHHHHHHH--cCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHhCCccccCccCE
Confidence 99999999999999998742 2222333333333 3789999999999975332 222333332 236889
Q ss_pred EEeccCCCCChHH
Q 030504 150 YEISAKSNYNFEK 162 (176)
Q Consensus 150 ~~~S~~~~~~v~~ 162 (176)
+++||++|.|+.+
T Consensus 160 v~~Sa~~g~~~~~ 172 (194)
T cd01891 160 LYASAKNGWASLN 172 (194)
T ss_pred EEeehhccccccc
Confidence 9999999988743
|
BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co |
| >cd01878 HflX HflX subfamily | Back alignment and domain information |
|---|
Probab=99.95 E-value=9.4e-27 Score=157.10 Aligned_cols=157 Identities=16% Similarity=0.087 Sum_probs=108.7
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCcccccc--c------cccc
Q 030504 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGG--L------RDGY 82 (176)
Q Consensus 11 ~~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~--~------~~~~ 82 (176)
...++|+++|++|||||||++++..+.......+....+........++. ..+.+|||||...... . ....
T Consensus 39 ~~~~~I~iiG~~g~GKStLl~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~ 117 (204)
T cd01878 39 SGIPTVALVGYTNAGKSTLFNALTGADVYAEDQLFATLDPTTRRLRLPDG-REVLLTDTVGFIRDLPHQLVEAFRSTLEE 117 (204)
T ss_pred cCCCeEEEECCCCCCHHHHHHHHhcchhccCCccceeccceeEEEEecCC-ceEEEeCCCccccCCCHHHHHHHHHHHHH
Confidence 34589999999999999999998877643221222222222222333322 3788999999732110 1 0112
Q ss_pred cccccEEEEEEeCCChhhhhhHHHHHHHHhhhc-CCCCEEEEEeCCCCCccccCHHHHHHHHHcCCeEEEeccCCCCChH
Q 030504 83 YIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFE 161 (176)
Q Consensus 83 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~liv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~ 161 (176)
+..+|++++|+|++++.++.....|...+.... .+.|+++|+||+|+....... ..+...+.+++++||+++.|++
T Consensus 118 ~~~~d~ii~v~D~~~~~~~~~~~~~~~~l~~~~~~~~~viiV~NK~Dl~~~~~~~---~~~~~~~~~~~~~Sa~~~~gi~ 194 (204)
T cd01878 118 VAEADLLLHVVDASDPDYEEQIETVEKVLKELGAEDIPMILVLNKIDLLDDEELE---ERLEAGRPDAVFISAKTGEGLD 194 (204)
T ss_pred HhcCCeEEEEEECCCCChhhHHHHHHHHHHHcCcCCCCEEEEEEccccCChHHHH---HHhhcCCCceEEEEcCCCCCHH
Confidence 567999999999999887777666665554432 478999999999997643322 4445567789999999999999
Q ss_pred HHHHHHHHHH
Q 030504 162 KPFLYLARKL 171 (176)
Q Consensus 162 ~~~~~l~~~i 171 (176)
+++++|.+.+
T Consensus 195 ~l~~~L~~~~ 204 (204)
T cd01878 195 ELLEAIEELL 204 (204)
T ss_pred HHHHHHHhhC
Confidence 9999998764
|
A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms. |
| >KOG0075 consensus GTP-binding ADP-ribosylation factor-like protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.95 E-value=2e-27 Score=145.23 Aligned_cols=157 Identities=22% Similarity=0.365 Sum_probs=130.8
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccccccccccEEEE
Q 030504 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAII 91 (176)
Q Consensus 12 ~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~ 91 (176)
.+..+.++|..++|||||+|....|.+.+...|+.|+....++ ...+.+.+||.||+.+++++|..|.+.+++++|
T Consensus 19 ~emel~lvGLq~sGKtt~Vn~ia~g~~~edmiptvGfnmrk~t----kgnvtiklwD~gGq~rfrsmWerycR~v~aivY 94 (186)
T KOG0075|consen 19 EEMELSLVGLQNSGKTTLVNVIARGQYLEDMIPTVGFNMRKVT----KGNVTIKLWDLGGQPRFRSMWERYCRGVSAIVY 94 (186)
T ss_pred heeeEEEEeeccCCcceEEEEEeeccchhhhcccccceeEEec----cCceEEEEEecCCCccHHHHHHHHhhcCcEEEE
Confidence 5678999999999999999999999999888999986555443 366789999999999999999999999999999
Q ss_pred EEeCCChhhhhhHHHHHHHHhhhc--CCCCEEEEEeCCCCCccccCHHHHHH-----HHHcCCeEEEeccCCCCChHHHH
Q 030504 92 MFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNRQVKAKQVTF-----HRKKNLQYYEISAKSNYNFEKPF 164 (176)
Q Consensus 92 v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~liv~nK~Dl~~~~~~~~~~~~-----~~~~~~~~~~~S~~~~~~v~~~~ 164 (176)
|+|+.++..+......+..+.... .++|+++++||.|+++.....+..+. .....+.+|.+|++...|++.+.
T Consensus 95 ~VDaad~~k~~~sr~EL~~LL~k~~l~gip~LVLGnK~d~~~AL~~~~li~rmgL~sitdREvcC~siScke~~Nid~~~ 174 (186)
T KOG0075|consen 95 VVDAADPDKLEASRSELHDLLDKPSLTGIPLLVLGNKIDLPGALSKIALIERMGLSSITDREVCCFSISCKEKVNIDITL 174 (186)
T ss_pred EeecCCcccchhhHHHHHHHhcchhhcCCcEEEecccccCcccccHHHHHHHhCccccccceEEEEEEEEcCCccHHHHH
Confidence 999999988877776666665553 69999999999999987655443322 12234678999999999999999
Q ss_pred HHHHHHHh
Q 030504 165 LYLARKLA 172 (176)
Q Consensus 165 ~~l~~~i~ 172 (176)
+||++...
T Consensus 175 ~Wli~hsk 182 (186)
T KOG0075|consen 175 DWLIEHSK 182 (186)
T ss_pred HHHHHHhh
Confidence 99998754
|
|
| >cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.7e-26 Score=149.72 Aligned_cols=155 Identities=15% Similarity=0.145 Sum_probs=108.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEec-CcEEEEEEEeCCCccccccccccccccccEEEEEE
Q 030504 15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTN-CGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMF 93 (176)
Q Consensus 15 ~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 93 (176)
.|+++|.+|+|||||++++..+.+.....+....+......... .....+.+|||||++.+...+..++..+|++++|+
T Consensus 2 ~i~iiG~~~~GKtsli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~il~v~ 81 (168)
T cd01887 2 VVTVMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAFEVPAEVLKIPGITFIDTPGHEAFTNMRARGASLTDIAILVV 81 (168)
T ss_pred EEEEEecCCCCHHHHHHHHHhcccccccCCCeEEeeccEEEecccCCcceEEEEeCCCcHHHHHHHHHHHhhcCEEEEEE
Confidence 48999999999999999999887765433333222222223222 14678899999999988888888889999999999
Q ss_pred eCCChhhhhhHHHHHHHHhhhcCCCCEEEEEeCCCCCccccCH---HHHHHHH------HcCCeEEEeccCCCCChHHHH
Q 030504 94 DVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKA---KQVTFHR------KKNLQYYEISAKSNYNFEKPF 164 (176)
Q Consensus 94 d~~~~~s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~~~~~~~---~~~~~~~------~~~~~~~~~S~~~~~~v~~~~ 164 (176)
|+++....+.. ..+..+.. .+.|+++|+||+|+....... ....+.. ...++++++|++++.|+++++
T Consensus 82 d~~~~~~~~~~-~~~~~~~~--~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~ 158 (168)
T cd01887 82 AADDGVMPQTI-EAIKLAKA--ANVPFIVALNKIDKPNANPERVKNELSELGLQGEDEWGGDVQIVPTSAKTGEGIDDLL 158 (168)
T ss_pred ECCCCccHHHH-HHHHHHHH--cCCCEEEEEEceecccccHHHHHHHHHHhhccccccccCcCcEEEeecccCCCHHHHH
Confidence 99875322211 11222222 378999999999987533211 1111111 123689999999999999999
Q ss_pred HHHHHHHh
Q 030504 165 LYLARKLA 172 (176)
Q Consensus 165 ~~l~~~i~ 172 (176)
++|.+...
T Consensus 159 ~~l~~~~~ 166 (168)
T cd01887 159 EAILLLAE 166 (168)
T ss_pred HHHHHhhh
Confidence 99988654
|
IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s. |
| >PRK15494 era GTPase Era; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.1e-26 Score=163.81 Aligned_cols=159 Identities=18% Similarity=0.269 Sum_probs=108.6
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccc-cccccc-------cc
Q 030504 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK-FGGLRD-------GY 82 (176)
Q Consensus 11 ~~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~-~~~~~~-------~~ 82 (176)
.+.++|+++|.+|||||||+|+++++.+. ...+..++++.............+.+|||||... +..+.. ..
T Consensus 50 ~k~~kV~ivG~~nvGKSTLin~l~~~k~~-ivs~k~~tTr~~~~~~~~~~~~qi~~~DTpG~~~~~~~l~~~~~r~~~~~ 128 (339)
T PRK15494 50 QKTVSVCIIGRPNSGKSTLLNRIIGEKLS-IVTPKVQTTRSIITGIITLKDTQVILYDTPGIFEPKGSLEKAMVRCAWSS 128 (339)
T ss_pred cceeEEEEEcCCCCCHHHHHHHHhCCcee-eccCCCCCccCcEEEEEEeCCeEEEEEECCCcCCCcccHHHHHHHHHHHH
Confidence 35569999999999999999998876653 2233334443333322223445789999999843 222221 23
Q ss_pred cccccEEEEEEeCCChhhhhhHH-HHHHHHhhhcCCCCEEEEEeCCCCCccccCHHHHHHHHHcC--CeEEEeccCCCCC
Q 030504 83 YIHGQCAIIMFDVTARLTYKNVP-TWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKN--LQYYEISAKSNYN 159 (176)
Q Consensus 83 ~~~~~~~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~p~liv~nK~Dl~~~~~~~~~~~~~~~~~--~~~~~~S~~~~~~ 159 (176)
+..+|++++|+|..+ ++.... .|+..+... +.|.++|+||+|+.+.. ..+..+.+...+ ..++++||++|.|
T Consensus 129 l~~aDvil~VvD~~~--s~~~~~~~il~~l~~~--~~p~IlViNKiDl~~~~-~~~~~~~l~~~~~~~~i~~iSAktg~g 203 (339)
T PRK15494 129 LHSADLVLLIIDSLK--SFDDITHNILDKLRSL--NIVPIFLLNKIDIESKY-LNDIKAFLTENHPDSLLFPISALSGKN 203 (339)
T ss_pred hhhCCEEEEEEECCC--CCCHHHHHHHHHHHhc--CCCEEEEEEhhcCcccc-HHHHHHHHHhcCCCcEEEEEeccCccC
Confidence 678999999999765 344443 344444433 56778899999997542 233445554443 6799999999999
Q ss_pred hHHHHHHHHHHHhcCC
Q 030504 160 FEKPFLYLARKLAGST 175 (176)
Q Consensus 160 v~~~~~~l~~~i~~~~ 175 (176)
++++|++|.+.+.+.|
T Consensus 204 v~eL~~~L~~~l~~~~ 219 (339)
T PRK15494 204 IDGLLEYITSKAKISP 219 (339)
T ss_pred HHHHHHHHHHhCCCCC
Confidence 9999999999887654
|
|
| >PRK04213 GTP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=2e-26 Score=155.23 Aligned_cols=153 Identities=22% Similarity=0.198 Sum_probs=103.4
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCC-----------cccccccc
Q 030504 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAG-----------QEKFGGLR 79 (176)
Q Consensus 11 ~~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g-----------~~~~~~~~ 79 (176)
...++|+++|.+|+|||||++++.++.+...+.+ |+++........ .+.+||||| ++.++..+
T Consensus 7 ~~~~~i~i~G~~~~GKSsLin~l~~~~~~~~~~~--~~t~~~~~~~~~----~~~l~Dt~G~~~~~~~~~~~~~~~~~~~ 80 (201)
T PRK04213 7 DRKPEIVFVGRSNVGKSTLVRELTGKKVRVGKRP--GVTRKPNHYDWG----DFILTDLPGFGFMSGVPKEVQEKIKDEI 80 (201)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCC--ceeeCceEEeec----ceEEEeCCccccccccCHHHHHHHHHHH
Confidence 3568999999999999999999887776543344 445544433332 589999999 34555554
Q ss_pred ccccc----cccEEEEEEeCCChhhh-h---------hHHHHHHHHhhhcCCCCEEEEEeCCCCCccccCHHHHHHHHHc
Q 030504 80 DGYYI----HGQCAIIMFDVTARLTY-K---------NVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKK 145 (176)
Q Consensus 80 ~~~~~----~~~~~i~v~d~~~~~s~-~---------~~~~~~~~~~~~~~~~p~liv~nK~Dl~~~~~~~~~~~~~~~~ 145 (176)
..++. .++++++|+|.++.... + .-..+...+.. .+.|+++|+||+|+.... .....++.+..
T Consensus 81 ~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~p~iiv~NK~Dl~~~~-~~~~~~~~~~~ 157 (201)
T PRK04213 81 VRYIEDNADRILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFLRE--LGIPPIVAVNKMDKIKNR-DEVLDEIAERL 157 (201)
T ss_pred HHHHHhhhhhheEEEEEEeCccccccccccccCCCcHHHHHHHHHHHH--cCCCeEEEEECccccCcH-HHHHHHHHHHh
Confidence 44443 45788899988653221 0 00111222222 389999999999996543 22333444555
Q ss_pred CC---------eEEEeccCCCCChHHHHHHHHHHHhc
Q 030504 146 NL---------QYYEISAKSNYNFEKPFLYLARKLAG 173 (176)
Q Consensus 146 ~~---------~~~~~S~~~~~~v~~~~~~l~~~i~~ 173 (176)
++ +++++||++| |++++++||++.+.+
T Consensus 158 ~~~~~~~~~~~~~~~~SA~~g-gi~~l~~~l~~~~~~ 193 (201)
T PRK04213 158 GLYPPWRQWQDIIAPISAKKG-GIEELKEAIRKRLHE 193 (201)
T ss_pred cCCccccccCCcEEEEecccC-CHHHHHHHHHHhhcC
Confidence 44 5899999999 999999999998765
|
|
| >cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily | Back alignment and domain information |
|---|
Probab=99.94 E-value=1e-25 Score=146.20 Aligned_cols=148 Identities=16% Similarity=0.143 Sum_probs=106.3
Q ss_pred EEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccc------cccccc--cccEE
Q 030504 18 IVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGL------RDGYYI--HGQCA 89 (176)
Q Consensus 18 i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~------~~~~~~--~~~~~ 89 (176)
++|.+|+|||||++++.+..+.....+..+.+.....+..+ +..+.+|||||+..+... +..++. .+|++
T Consensus 1 l~G~~~~GKssl~~~~~~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~v 78 (158)
T cd01879 1 LVGNPNVGKTTLFNALTGARQKVGNWPGVTVEKKEGRFKLG--GKEIEIVDLPGTYSLSPYSEDEKVARDFLLGEKPDLI 78 (158)
T ss_pred CCCCCCCCHHHHHHHHhcCcccccCCCCcccccceEEEeeC--CeEEEEEECCCccccCCCChhHHHHHHHhcCCCCcEE
Confidence 58999999999999987765443333333333333334443 357899999998776542 445554 89999
Q ss_pred EEEEeCCChhhhhhHHHHHHHHhhhcCCCCEEEEEeCCCCCccc-cCHHHHHHHHHcCCeEEEeccCCCCChHHHHHHHH
Q 030504 90 IIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQ-VKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLA 168 (176)
Q Consensus 90 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l~ 168 (176)
++|+|++++... ..+...+... ++|+++|+||+|+.+.. .......+....+++++++|++++.|++++++++.
T Consensus 79 i~v~d~~~~~~~---~~~~~~~~~~--~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~iSa~~~~~~~~l~~~l~ 153 (158)
T cd01879 79 VNVVDATNLERN---LYLTLQLLEL--GLPVVVALNMIDEAEKRGIKIDLDKLSELLGVPVVPTSARKGEGIDELKDAIA 153 (158)
T ss_pred EEEeeCCcchhH---HHHHHHHHHc--CCCEEEEEehhhhcccccchhhHHHHHHhhCCCeEEEEccCCCCHHHHHHHHH
Confidence 999999876432 2333334333 79999999999997643 33334466677789999999999999999999998
Q ss_pred HHHh
Q 030504 169 RKLA 172 (176)
Q Consensus 169 ~~i~ 172 (176)
+.+.
T Consensus 154 ~~~~ 157 (158)
T cd01879 154 ELAE 157 (158)
T ss_pred HHhc
Confidence 8753
|
E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent. |
| >PRK12299 obgE GTPase CgtA; Reviewed | Back alignment and domain information |
|---|
Probab=99.94 E-value=8.5e-26 Score=161.27 Aligned_cols=158 Identities=16% Similarity=0.111 Sum_probs=111.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecC-cEEEEEEEeCCCccccc----cc---cccccccc
Q 030504 15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNC-GKIRFYCWDTAGQEKFG----GL---RDGYYIHG 86 (176)
Q Consensus 15 ~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~D~~g~~~~~----~~---~~~~~~~~ 86 (176)
.|+++|.|+||||||++++...+.. .....++|.......+.. ....+.+||+||.-... .+ +...+.++
T Consensus 160 dVglVG~PNaGKSTLln~ls~a~~~--va~ypfTT~~p~~G~v~~~~~~~~~i~D~PGli~ga~~~~gLg~~flrhie~a 237 (335)
T PRK12299 160 DVGLVGLPNAGKSTLISAVSAAKPK--IADYPFTTLHPNLGVVRVDDYKSFVIADIPGLIEGASEGAGLGHRFLKHIERT 237 (335)
T ss_pred CEEEEcCCCCCHHHHHHHHHcCCCc--cCCCCCceeCceEEEEEeCCCcEEEEEeCCCccCCCCccccHHHHHHHHhhhc
Confidence 5999999999999999998765422 122222233332222221 34568999999964311 12 22345679
Q ss_pred cEEEEEEeCCChhhhhhHHHHHHHHhhhc---CCCCEEEEEeCCCCCcccc-CH-HHHHHHHHcCCeEEEeccCCCCChH
Q 030504 87 QCAIIMFDVTARLTYKNVPTWHRDLCRVC---ENIPIVLCGNKVDVKNRQV-KA-KQVTFHRKKNLQYYEISAKSNYNFE 161 (176)
Q Consensus 87 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~~---~~~p~liv~nK~Dl~~~~~-~~-~~~~~~~~~~~~~~~~S~~~~~~v~ 161 (176)
+++++|+|+++..+++....|...+.... .++|+++|+||+|+..... .. ....++...+++++++||++++|++
T Consensus 238 ~vlI~ViD~s~~~s~e~~~~~~~EL~~~~~~L~~kp~IIV~NKiDL~~~~~~~~~~~~~~~~~~~~~i~~iSAktg~GI~ 317 (335)
T PRK12299 238 RLLLHLVDIEAVDPVEDYKTIRNELEKYSPELADKPRILVLNKIDLLDEEEEREKRAALELAALGGPVFLISAVTGEGLD 317 (335)
T ss_pred CEEEEEEcCCCCCCHHHHHHHHHHHHHhhhhcccCCeEEEEECcccCCchhHHHHHHHHHHHhcCCCEEEEEcCCCCCHH
Confidence 99999999998777888888887776543 4789999999999975432 22 2233445567899999999999999
Q ss_pred HHHHHHHHHHhcC
Q 030504 162 KPFLYLARKLAGS 174 (176)
Q Consensus 162 ~~~~~l~~~i~~~ 174 (176)
+++++|.+.+.+.
T Consensus 318 eL~~~L~~~l~~~ 330 (335)
T PRK12299 318 ELLRALWELLEEA 330 (335)
T ss_pred HHHHHHHHHHHhh
Confidence 9999999887653
|
|
| >cd00882 Ras_like_GTPase Ras-like GTPase superfamily | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.8e-25 Score=143.71 Aligned_cols=150 Identities=39% Similarity=0.662 Sum_probs=119.5
Q ss_pred EEcCCCCcHHHHHHHHhcCCC-CCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccccccccccEEEEEEeCC
Q 030504 18 IVGDGGTGKTTFVKRHLTGEF-EKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVT 96 (176)
Q Consensus 18 i~G~~~~GKttl~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~ 96 (176)
++|++|+|||||++++..... .....++. .+..............+.+||+||+..+...+..+++.+|++++|+|++
T Consensus 1 iiG~~~~GKStl~~~l~~~~~~~~~~~~t~-~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~ 79 (157)
T cd00882 1 VVGDSGVGKTSLLNRLLGGEFVPEEYETTI-IDFYSKTIEVDGKKVKLQIWDTAGQERFRSLRRLYYRGADGIILVYDVT 79 (157)
T ss_pred CCCcCCCcHHHHHHHHHhCCcCCcccccch-hheeeEEEEECCEEEEEEEEecCChHHHHhHHHHHhcCCCEEEEEEECc
Confidence 589999999999999887766 34444454 5666666666667889999999999888777788889999999999999
Q ss_pred ChhhhhhHHHHH--HHHhhhcCCCCEEEEEeCCCCCccccCHH---HHHHHHHcCCeEEEeccCCCCChHHHHHHHH
Q 030504 97 ARLTYKNVPTWH--RDLCRVCENIPIVLCGNKVDVKNRQVKAK---QVTFHRKKNLQYYEISAKSNYNFEKPFLYLA 168 (176)
Q Consensus 97 ~~~s~~~~~~~~--~~~~~~~~~~p~liv~nK~Dl~~~~~~~~---~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l~ 168 (176)
++.+......|. ........+.|+++++||+|+........ .........++++++|+..+.|++++++||.
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~ 156 (157)
T cd00882 80 DRESFENVKEWLLLILINKEGENIPIILVGNKIDLPEERVVSEEELAEQLAKELGVPYFETSAKTGENVEELFEELA 156 (157)
T ss_pred CHHHHHHHHHHHHHHHHhhccCCCcEEEEEeccccccccchHHHHHHHHHHhhcCCcEEEEecCCCCChHHHHHHHh
Confidence 999888888762 22233346899999999999976544333 2345556678999999999999999999986
|
The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb |
| >TIGR00436 era GTP-binding protein Era | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.1e-25 Score=157.56 Aligned_cols=156 Identities=15% Similarity=0.098 Sum_probs=106.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccc-c-------ccccccccc
Q 030504 15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFG-G-------LRDGYYIHG 86 (176)
Q Consensus 15 ~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~-~-------~~~~~~~~~ 86 (176)
+|+++|.+|||||||+|++.+..... .++..+++..............+.+|||||..... . .....+.++
T Consensus 2 ~V~liG~pnvGKSTLln~L~~~~~~~-vs~~~~TTr~~i~~i~~~~~~qii~vDTPG~~~~~~~l~~~~~~~~~~~l~~a 80 (270)
T TIGR00436 2 FVAILGRPNVGKSTLLNQLHGQKISI-TSPKAQTTRNRISGIHTTGASQIIFIDTPGFHEKKHSLNRLMMKEARSAIGGV 80 (270)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcEee-cCCCCCcccCcEEEEEEcCCcEEEEEECcCCCCCcchHHHHHHHHHHHHHhhC
Confidence 68999999999999999988765432 23333334433322222233568999999975431 1 123456889
Q ss_pred cEEEEEEeCCChhhhhhHHHHHHHHhhhcCCCCEEEEEeCCCCCccccC-HHHHHHHHHcCC-eEEEeccCCCCChHHHH
Q 030504 87 QCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVK-AKQVTFHRKKNL-QYYEISAKSNYNFEKPF 164 (176)
Q Consensus 87 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~~~~~~-~~~~~~~~~~~~-~~~~~S~~~~~~v~~~~ 164 (176)
|++++|+|+++..+.+ ..+...+.. .+.|+++|+||+|+...... .....+....+. .++++||++|.|+++++
T Consensus 81 Dvvl~VvD~~~~~~~~--~~i~~~l~~--~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~v~~iSA~~g~gi~~L~ 156 (270)
T TIGR00436 81 DLILFVVDSDQWNGDG--EFVLTKLQN--LKRPVVLTRNKLDNKFKDKLLPLIDKYAILEDFKDIVPISALTGDNTSFLA 156 (270)
T ss_pred CEEEEEEECCCCCchH--HHHHHHHHh--cCCCEEEEEECeeCCCHHHHHHHHHHHHhhcCCCceEEEecCCCCCHHHHH
Confidence 9999999999876553 333334433 37899999999999643221 122233333443 79999999999999999
Q ss_pred HHHHHHHhcCC
Q 030504 165 LYLARKLAGST 175 (176)
Q Consensus 165 ~~l~~~i~~~~ 175 (176)
+++.+.+.+.|
T Consensus 157 ~~l~~~l~~~~ 167 (270)
T TIGR00436 157 AFIEVHLPEGP 167 (270)
T ss_pred HHHHHhCCCCC
Confidence 99999887654
|
Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein. |
| >TIGR01393 lepA GTP-binding protein LepA | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.7e-25 Score=170.37 Aligned_cols=158 Identities=15% Similarity=0.158 Sum_probs=118.8
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCC-------CCCccc------cceeEEEeEEEEEe-----cCcEEEEEEEeCCCccc
Q 030504 13 SFKLVIVGDGGTGKTTFVKRHLTGE-------FEKKYE------PTIGVEVHPLDFFT-----NCGKIRFYCWDTAGQEK 74 (176)
Q Consensus 13 ~~~i~i~G~~~~GKttl~~~~~~~~-------~~~~~~------~~~~~~~~~~~~~~-----~~~~~~~~~~D~~g~~~ 74 (176)
..||+++|+.++|||||+++++... +...+. ...|.+.....+.. ++..+.+.+|||||++.
T Consensus 3 iRNi~IIGh~d~GKTTL~~rLl~~~g~i~~~~~~~~~~D~~~~ErerGiTi~~~~v~~~~~~~~g~~~~l~liDTPG~~d 82 (595)
T TIGR01393 3 IRNFSIIAHIDHGKSTLADRLLEYTGAISEREMREQVLDSMDLERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVD 82 (595)
T ss_pred eeEEEEECCCCCCHHHHHHHHHHHcCCCccccccccccCCChHHHhcCCCeeeeEEEEEEEcCCCCEEEEEEEECCCcHH
Confidence 4689999999999999999988631 112222 22355555444333 45668999999999999
Q ss_pred cccccccccccccEEEEEEeCCChhhhhhHHHHHHHHhhhcCCCCEEEEEeCCCCCccccCHHHHHHHHHcCC---eEEE
Q 030504 75 FGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNL---QYYE 151 (176)
Q Consensus 75 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~~~~~~~~~~~~~~~~~~---~~~~ 151 (176)
+...+..++..+|++++|+|++++.+.+....|..... .+.|+++|+||+|+..........++....++ .+++
T Consensus 83 F~~~v~~~l~~aD~aILVvDat~g~~~qt~~~~~~~~~---~~ipiIiViNKiDl~~~~~~~~~~el~~~lg~~~~~vi~ 159 (595)
T TIGR01393 83 FSYEVSRSLAACEGALLLVDAAQGIEAQTLANVYLALE---NDLEIIPVINKIDLPSADPERVKKEIEEVIGLDASEAIL 159 (595)
T ss_pred HHHHHHHHHHhCCEEEEEecCCCCCCHhHHHHHHHHHH---cCCCEEEEEECcCCCccCHHHHHHHHHHHhCCCcceEEE
Confidence 99888999999999999999999877776666654432 37899999999999754322222344444555 4899
Q ss_pred eccCCCCChHHHHHHHHHHHhc
Q 030504 152 ISAKSNYNFEKPFLYLARKLAG 173 (176)
Q Consensus 152 ~S~~~~~~v~~~~~~l~~~i~~ 173 (176)
+||++|.|++++|+++++.+..
T Consensus 160 vSAktG~GI~~Lle~I~~~lp~ 181 (595)
T TIGR01393 160 ASAKTGIGIEEILEAIVKRVPP 181 (595)
T ss_pred eeccCCCCHHHHHHHHHHhCCC
Confidence 9999999999999999987754
|
LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown. |
| >TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE | Back alignment and domain information |
|---|
Probab=99.93 E-value=4.6e-25 Score=162.80 Aligned_cols=153 Identities=23% Similarity=0.241 Sum_probs=110.1
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccc--------cccc
Q 030504 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGL--------RDGY 82 (176)
Q Consensus 11 ~~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~--------~~~~ 82 (176)
.+.++|+++|.+|+|||||+|+++...... ..+..|++.......+...+..+.+|||||...+... ...+
T Consensus 201 ~~g~kVvIvG~~nvGKSSLiN~L~~~~~ai-vs~~pgtTrd~~~~~i~~~g~~v~l~DTaG~~~~~~~ie~~gi~~~~~~ 279 (442)
T TIGR00450 201 DDGFKLAIVGSPNVGKSSLLNALLKQDRAI-VSDIKGTTRDVVEGDFELNGILIKLLDTAGIREHADFVERLGIEKSFKA 279 (442)
T ss_pred hcCCEEEEECCCCCcHHHHHHHHhCCCCcc-cCCCCCcEEEEEEEEEEECCEEEEEeeCCCcccchhHHHHHHHHHHHHH
Confidence 356899999999999999999988654311 1222333444433333334566799999998655432 2356
Q ss_pred cccccEEEEEEeCCChhhhhhHHHHHHHHhhhcCCCCEEEEEeCCCCCccccCHHHHHHHHHcCCeEEEeccCCCCChHH
Q 030504 83 YIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEK 162 (176)
Q Consensus 83 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~ 162 (176)
++.+|++++|+|++++.+++.. |+..+.. .+.|+++|+||+|+... +...+.+..+.+++++|+++ .|+++
T Consensus 280 ~~~aD~il~V~D~s~~~s~~~~--~l~~~~~--~~~piIlV~NK~Dl~~~----~~~~~~~~~~~~~~~vSak~-~gI~~ 350 (442)
T TIGR00450 280 IKQADLVIYVLDASQPLTKDDF--LIIDLNK--SKKPFILVLNKIDLKIN----SLEFFVSSKVLNSSNLSAKQ-LKIKA 350 (442)
T ss_pred HhhCCEEEEEEECCCCCChhHH--HHHHHhh--CCCCEEEEEECccCCCc----chhhhhhhcCCceEEEEEec-CCHHH
Confidence 7899999999999988776654 5555443 37899999999999654 22344566778899999998 69999
Q ss_pred HHHHHHHHHhc
Q 030504 163 PFLYLARKLAG 173 (176)
Q Consensus 163 ~~~~l~~~i~~ 173 (176)
+|+.+.+.+.+
T Consensus 351 ~~~~L~~~i~~ 361 (442)
T TIGR00450 351 LVDLLTQKINA 361 (442)
T ss_pred HHHHHHHHHHH
Confidence 99998887754
|
TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer. |
| >PRK03003 GTP-binding protein Der; Reviewed | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.9e-25 Score=166.06 Aligned_cols=155 Identities=22% Similarity=0.231 Sum_probs=107.5
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccc--------ccccccccc
Q 030504 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK--------FGGLRDGYY 83 (176)
Q Consensus 12 ~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~--------~~~~~~~~~ 83 (176)
...+|+|+|.+|||||||+|+++.+... ...++.|++...........+..+.+|||||.+. +...+..++
T Consensus 37 ~~~~V~IvG~~nvGKSSL~nrl~~~~~~-~v~~~~gvT~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~ 115 (472)
T PRK03003 37 PLPVVAVVGRPNVGKSTLVNRILGRREA-VVEDVPGVTRDRVSYDAEWNGRRFTVVDTGGWEPDAKGLQASVAEQAEVAM 115 (472)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCcCcc-cccCCCCCCEeeEEEEEEECCcEEEEEeCCCcCCcchhHHHHHHHHHHHHH
Confidence 3468999999999999999998876542 2233445554444443333445688999999763 222345567
Q ss_pred ccccEEEEEEeCCChhhhhhHHHHHHHHhhhcCCCCEEEEEeCCCCCccccCHHHHHHHHHcCC-eEEEeccCCCCChHH
Q 030504 84 IHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNL-QYYEISAKSNYNFEK 162 (176)
Q Consensus 84 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~S~~~~~~v~~ 162 (176)
+.+|++++|+|++++.+... ..+...+.. .++|+++|+||+|+..... +...+. ..++ ..+++||++|.|+++
T Consensus 116 ~~aD~il~VvD~~~~~s~~~-~~i~~~l~~--~~~piilV~NK~Dl~~~~~--~~~~~~-~~g~~~~~~iSA~~g~gi~e 189 (472)
T PRK03003 116 RTADAVLFVVDATVGATATD-EAVARVLRR--SGKPVILAANKVDDERGEA--DAAALW-SLGLGEPHPVSALHGRGVGD 189 (472)
T ss_pred HhCCEEEEEEECCCCCCHHH-HHHHHHHHH--cCCCEEEEEECccCCccch--hhHHHH-hcCCCCeEEEEcCCCCCcHH
Confidence 89999999999998755432 233334433 3899999999999965321 112221 2333 357999999999999
Q ss_pred HHHHHHHHHhc
Q 030504 163 PFLYLARKLAG 173 (176)
Q Consensus 163 ~~~~l~~~i~~ 173 (176)
+|+++++.+.+
T Consensus 190 L~~~i~~~l~~ 200 (472)
T PRK03003 190 LLDAVLAALPE 200 (472)
T ss_pred HHHHHHhhccc
Confidence 99999998765
|
|
| >KOG0076 consensus GTP-binding ADP-ribosylation factor-like protein yARL3 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.2e-26 Score=144.46 Aligned_cols=160 Identities=24% Similarity=0.384 Sum_probs=127.9
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHhc-------CCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCcccccccccccc
Q 030504 11 YPSFKLVIVGDGGTGKTTFVKRHLT-------GEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYY 83 (176)
Q Consensus 11 ~~~~~i~i~G~~~~GKttl~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~ 83 (176)
+..+.++|+|+.++|||||+.+... +--+....+|.|.....+.+ ....+.+||.+|++..+++|..||
T Consensus 15 Ke~y~vlIlgldnAGKttfLe~~Kt~~~~~~~~l~~~ki~~tvgLnig~i~v----~~~~l~fwdlgGQe~lrSlw~~yY 90 (197)
T KOG0076|consen 15 KEDYSVLILGLDNAGKTTFLEALKTDFSKAYGGLNPSKITPTVGLNIGTIEV----CNAPLSFWDLGGQESLRSLWKKYY 90 (197)
T ss_pred hhhhhheeeccccCCchhHHHHHHHHHHhhhcCCCHHHeecccceeecceee----ccceeEEEEcCChHHHHHHHHHHH
Confidence 4678999999999999999998432 11123455666655555544 356789999999999999999999
Q ss_pred ccccEEEEEEeCCChhhhhhHHHHHHHHhh--hcCCCCEEEEEeCCCCCccccCHHHHHHHH---H---cCCeEEEeccC
Q 030504 84 IHGQCAIIMFDVTARLTYKNVPTWHRDLCR--VCENIPIVLCGNKVDVKNRQVKAKQVTFHR---K---KNLQYYEISAK 155 (176)
Q Consensus 84 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~--~~~~~p~liv~nK~Dl~~~~~~~~~~~~~~---~---~~~~~~~~S~~ 155 (176)
..++++|+++|+++++.|+.....++.+.. ...+.|+++.+||.|+.+.....+....+. . ..+++..+||+
T Consensus 91 ~~~H~ii~viDa~~~eR~~~~~t~~~~v~~~E~leg~p~L~lankqd~q~~~~~~El~~~~~~~e~~~~rd~~~~pvSal 170 (197)
T KOG0076|consen 91 WLAHGIIYVIDATDRERFEESKTAFEKVVENEKLEGAPVLVLANKQDLQNAMEAAELDGVFGLAELIPRRDNPFQPVSAL 170 (197)
T ss_pred HHhceeEEeecCCCHHHHHHHHHHHHHHHHHHHhcCCchhhhcchhhhhhhhhHHHHHHHhhhhhhcCCccCccccchhh
Confidence 999999999999999988887766555533 347999999999999998777666554333 2 34789999999
Q ss_pred CCCChHHHHHHHHHHHhcC
Q 030504 156 SNYNFEKPFLYLARKLAGS 174 (176)
Q Consensus 156 ~~~~v~~~~~~l~~~i~~~ 174 (176)
+|+||++...|+++.+..+
T Consensus 171 ~gegv~egi~w~v~~~~kn 189 (197)
T KOG0076|consen 171 TGEGVKEGIEWLVKKLEKN 189 (197)
T ss_pred hcccHHHHHHHHHHHHhhc
Confidence 9999999999999998765
|
|
| >KOG1673 consensus Ras GTPases [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.9e-25 Score=136.50 Aligned_cols=165 Identities=24% Similarity=0.397 Sum_probs=144.7
Q ss_pred CCCCeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccccccccccE
Q 030504 9 VDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQC 88 (176)
Q Consensus 9 ~~~~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~ 88 (176)
.+.-.+||.++|.+..|||||+-.+..+.+.+.+..+.|+....+++...+..+.|.+||.+|++++..+.+..-..+-+
T Consensus 16 ~n~Vslkv~llGD~qiGKTs~mvkYV~~~~de~~~q~~GvN~mdkt~~i~~t~IsfSIwdlgG~~~~~n~lPiac~dsva 95 (205)
T KOG1673|consen 16 SNLVSLKVGLLGDAQIGKTSLMVKYVQNEYDEEYTQTLGVNFMDKTVSIRGTDISFSIWDLGGQREFINMLPIACKDSVA 95 (205)
T ss_pred ccceEEEEEeecccccCceeeehhhhcchhHHHHHHHhCccceeeEEEecceEEEEEEEecCCcHhhhccCceeecCcEE
Confidence 34468999999999999999999999999988899999999999999999999999999999999999988888889999
Q ss_pred EEEEEeCCChhhhhhHHHHHHHHhhhcC-CCCEEEEEeCCCCCcc-------ccCHHHHHHHHHcCCeEEEeccCCCCCh
Q 030504 89 AIIMFDVTARLTYKNVPTWHRDLCRVCE-NIPIVLCGNKVDVKNR-------QVKAKQVTFHRKKNLQYYEISAKSNYNF 160 (176)
Q Consensus 89 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~p~liv~nK~Dl~~~-------~~~~~~~~~~~~~~~~~~~~S~~~~~~v 160 (176)
++++||++.++++..+..|+++....+. .+| ++|+||-|+.-+ ....+.+.+++..+.++|.||+....|+
T Consensus 96 IlFmFDLt~r~TLnSi~~WY~QAr~~NktAiP-ilvGTKyD~fi~lp~e~Q~~I~~qar~YAk~mnAsL~F~Sts~sINv 174 (205)
T KOG1673|consen 96 ILFMFDLTRRSTLNSIKEWYRQARGLNKTAIP-ILVGTKYDLFIDLPPELQETISRQARKYAKVMNASLFFCSTSHSINV 174 (205)
T ss_pred EEEEEecCchHHHHHHHHHHHHHhccCCccce-EEeccchHhhhcCCHHHHHHHHHHHHHHHHHhCCcEEEeeccccccH
Confidence 9999999999999999999999887753 455 456999996432 2334566888889999999999999999
Q ss_pred HHHHHHHHHHHhcC
Q 030504 161 EKPFLYLARKLAGS 174 (176)
Q Consensus 161 ~~~~~~l~~~i~~~ 174 (176)
+.+|+.+..++..-
T Consensus 175 ~KIFK~vlAklFnL 188 (205)
T KOG1673|consen 175 QKIFKIVLAKLFNL 188 (205)
T ss_pred HHHHHHHHHHHhCC
Confidence 99999998887653
|
|
| >cd01894 EngA1 EngA1 subfamily | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.1e-25 Score=143.69 Aligned_cols=148 Identities=21% Similarity=0.150 Sum_probs=101.2
Q ss_pred EEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCcccccc--------ccccccccccE
Q 030504 17 VIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGG--------LRDGYYIHGQC 88 (176)
Q Consensus 17 ~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~--------~~~~~~~~~~~ 88 (176)
+++|.+|+|||||++++....... .....+.+..............+.+|||||+..+.. .....+.++|+
T Consensus 1 ~l~G~~~~GKssl~~~l~~~~~~~-~~~~~~~t~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~d~ 79 (157)
T cd01894 1 AIVGRPNVGKSTLFNRLTGRRDAI-VEDTPGVTRDRIYGEAEWGGREFILIDTGGIEPDDEGISKEIREQAELAIEEADV 79 (157)
T ss_pred CccCCCCCCHHHHHHHHhCCcEEe-ecCCCCceeCceeEEEEECCeEEEEEECCCCCCchhHHHHHHHHHHHHHHHhCCE
Confidence 479999999999999988664211 111222333333333333456789999999887544 33455778999
Q ss_pred EEEEEeCCChhhhhhHHHHHHHHhhhcCCCCEEEEEeCCCCCccccCHHHHHHHHHcCC-eEEEeccCCCCChHHHHHHH
Q 030504 89 AIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNL-QYYEISAKSNYNFEKPFLYL 167 (176)
Q Consensus 89 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~S~~~~~~v~~~~~~l 167 (176)
+++|+|+.++.+.... .+...+... +.|+++|+||+|+...... .......+. .++++|++++.|++++|+++
T Consensus 80 ii~v~d~~~~~~~~~~-~~~~~~~~~--~~piiiv~nK~D~~~~~~~---~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l 153 (157)
T cd01894 80 ILFVVDGREGLTPADE-EIAKYLRKS--KKPVILVVNKVDNIKEEDE---AAEFYSLGFGEPIPISAEHGRGIGDLLDAI 153 (157)
T ss_pred EEEEEeccccCCccHH-HHHHHHHhc--CCCEEEEEECcccCChHHH---HHHHHhcCCCCeEEEecccCCCHHHHHHHH
Confidence 9999999876543332 222333333 7999999999999764432 233334555 78999999999999999999
Q ss_pred HHHH
Q 030504 168 ARKL 171 (176)
Q Consensus 168 ~~~i 171 (176)
++.+
T Consensus 154 ~~~~ 157 (157)
T cd01894 154 LELL 157 (157)
T ss_pred HhhC
Confidence 8753
|
This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability. |
| >cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes | Back alignment and domain information |
|---|
Probab=99.93 E-value=8.6e-25 Score=141.56 Aligned_cols=147 Identities=18% Similarity=0.154 Sum_probs=104.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccc--------ccccccc
Q 030504 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGL--------RDGYYIH 85 (176)
Q Consensus 14 ~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~--------~~~~~~~ 85 (176)
++|+++|++|+|||||++++..+.... ..+..+.+..............+.+|||||...+... ....+.+
T Consensus 2 ~~i~l~G~~~~GKstli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~ 80 (157)
T cd04164 2 IKVVIVGKPNVGKSSLLNALAGRDRAI-VSDIAGTTRDVIEESIDIGGIPVRLIDTAGIRETEDEIEKIGIERAREAIEE 80 (157)
T ss_pred cEEEEECCCCCCHHHHHHHHHCCceEe-ccCCCCCccceEEEEEEeCCEEEEEEECCCcCCCcchHHHHHHHHHHHHHhh
Confidence 589999999999999999987665321 1122232333222233334567899999997655432 2245678
Q ss_pred ccEEEEEEeCCChhhhhhHHHHHHHHhhhcCCCCEEEEEeCCCCCccccCHHHHHHHHHcCCeEEEeccCCCCChHHHHH
Q 030504 86 GQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFL 165 (176)
Q Consensus 86 ~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~ 165 (176)
+|++++|+|++++.+......+.. ..+.|+++|+||.|+...... .....+.+++++||+++.|++++++
T Consensus 81 ~~~~v~v~d~~~~~~~~~~~~~~~-----~~~~~vi~v~nK~D~~~~~~~-----~~~~~~~~~~~~Sa~~~~~v~~l~~ 150 (157)
T cd04164 81 ADLVLFVIDASRGLDEEDLEILEL-----PADKPIIVVLNKSDLLPDSEL-----LSLLAGKPIIAISAKTGEGLDELKE 150 (157)
T ss_pred CCEEEEEEECCCCCCHHHHHHHHh-----hcCCCEEEEEEchhcCCcccc-----ccccCCCceEEEECCCCCCHHHHHH
Confidence 999999999998766555543322 348999999999999764433 3444567899999999999999999
Q ss_pred HHHHHH
Q 030504 166 YLARKL 171 (176)
Q Consensus 166 ~l~~~i 171 (176)
+|...+
T Consensus 151 ~l~~~~ 156 (157)
T cd04164 151 ALLELA 156 (157)
T ss_pred HHHHhh
Confidence 998754
|
It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance. |
| >cd01889 SelB_euk SelB subfamily | Back alignment and domain information |
|---|
Probab=99.93 E-value=8.1e-25 Score=146.30 Aligned_cols=156 Identities=15% Similarity=0.069 Sum_probs=101.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcC----CCCCcc-----ccceeEEEeEEEEE----------ecCcEEEEEEEeCCCccc
Q 030504 14 FKLVIVGDGGTGKTTFVKRHLTG----EFEKKY-----EPTIGVEVHPLDFF----------TNCGKIRFYCWDTAGQEK 74 (176)
Q Consensus 14 ~~i~i~G~~~~GKttl~~~~~~~----~~~~~~-----~~~~~~~~~~~~~~----------~~~~~~~~~~~D~~g~~~ 74 (176)
+||+++|++++|||||++++... .+.... ..|.+.......+. .....+.+.+|||||+..
T Consensus 1 ~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~ 80 (192)
T cd01889 1 VNVGVLGHVDSGKTSLAKALSEIASTAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQITLVDCPGHAS 80 (192)
T ss_pred CeEEEEecCCCCHHHHHHHHHhccchhhhccCHHHHHcCCeeeecceEEEecccccccccccccccCceEEEEECCCcHH
Confidence 58999999999999999998752 111111 12333333333322 123367899999999865
Q ss_pred cccccccccccccEEEEEEeCCChhhhhhHHHHHHHHhhhcCCCCEEEEEeCCCCCccccC----HHHHHHHH-------
Q 030504 75 FGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVK----AKQVTFHR------- 143 (176)
Q Consensus 75 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~~~~~~----~~~~~~~~------- 143 (176)
+..........+|++++|+|+++....+....+. .. .. .+.|+++++||+|+...... .+..+.+.
T Consensus 81 ~~~~~~~~~~~~d~vi~VvD~~~~~~~~~~~~~~-~~-~~-~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~l~~~~~~~~ 157 (192)
T cd01889 81 LIRTIIGGAQIIDLMLLVVDATKGIQTQTAECLV-IG-EI-LCKKLIVVLNKIDLIPEEERERKIEKMKKKLQKTLEKTR 157 (192)
T ss_pred HHHHHHHHHhhCCEEEEEEECCCCccHHHHHHHH-HH-HH-cCCCEEEEEECcccCCHHHHHHHHHHHHHHHHHHHHhcC
Confidence 4333333356679999999998754433332222 11 11 26799999999998743221 11111111
Q ss_pred HcCCeEEEeccCCCCChHHHHHHHHHHHh
Q 030504 144 KKNLQYYEISAKSNYNFEKPFLYLARKLA 172 (176)
Q Consensus 144 ~~~~~~~~~S~~~~~~v~~~~~~l~~~i~ 172 (176)
..+++++++||++|.|++++++++..+|.
T Consensus 158 ~~~~~vi~iSa~~g~gi~~L~~~l~~~~~ 186 (192)
T cd01889 158 FKNSPIIPVSAKPGGGEAELGKDLNNLIV 186 (192)
T ss_pred cCCCCEEEEeccCCCCHHHHHHHHHhccc
Confidence 23678999999999999999999999876
|
SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk |
| >TIGR02729 Obg_CgtA Obg family GTPase CgtA | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.6e-24 Score=154.62 Aligned_cols=157 Identities=15% Similarity=0.132 Sum_probs=106.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccc----ccccc---ccccc
Q 030504 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFG----GLRDG---YYIHG 86 (176)
Q Consensus 14 ~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~----~~~~~---~~~~~ 86 (176)
-.|+++|.++||||||++++...+......+..........+.++ ....+.+||+||..... .+... .+.++
T Consensus 158 adV~lvG~pnaGKSTLl~~lt~~~~~va~y~fTT~~p~ig~v~~~-~~~~~~i~D~PGli~~a~~~~gLg~~flrhiera 236 (329)
T TIGR02729 158 ADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLVPNLGVVRVD-DGRSFVIADIPGLIEGASEGAGLGHRFLKHIERT 236 (329)
T ss_pred ccEEEEcCCCCCHHHHHHHHhcCCccccCCCCCccCCEEEEEEeC-CceEEEEEeCCCcccCCcccccHHHHHHHHHHhh
Confidence 369999999999999999987665321111111111111122222 23678999999974322 22222 34579
Q ss_pred cEEEEEEeCCCh---hhhhhHHHHHHHHhhh---cCCCCEEEEEeCCCCCccccCHH-HHHHHHHcCCeEEEeccCCCCC
Q 030504 87 QCAIIMFDVTAR---LTYKNVPTWHRDLCRV---CENIPIVLCGNKVDVKNRQVKAK-QVTFHRKKNLQYYEISAKSNYN 159 (176)
Q Consensus 87 ~~~i~v~d~~~~---~s~~~~~~~~~~~~~~---~~~~p~liv~nK~Dl~~~~~~~~-~~~~~~~~~~~~~~~S~~~~~~ 159 (176)
+++++|+|+++. ..++.+..|...+... ..++|+++|+||+|+.......+ ...+.+..+.+++++||++++|
T Consensus 237 d~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~~~l~~kp~IIV~NK~DL~~~~~~~~~~~~l~~~~~~~vi~iSAktg~G 316 (329)
T TIGR02729 237 RVLLHLIDISPLDGRDPIEDYEIIRNELKKYSPELAEKPRIVVLNKIDLLDEEELAELLKELKKALGKPVFPISALTGEG 316 (329)
T ss_pred CEEEEEEcCccccccCHHHHHHHHHHHHHHhhhhhccCCEEEEEeCccCCChHHHHHHHHHHHHHcCCcEEEEEccCCcC
Confidence 999999999976 5666666666666543 24789999999999976433222 2345556678999999999999
Q ss_pred hHHHHHHHHHHH
Q 030504 160 FEKPFLYLARKL 171 (176)
Q Consensus 160 v~~~~~~l~~~i 171 (176)
++++++++.+.+
T Consensus 317 I~eL~~~I~~~l 328 (329)
T TIGR02729 317 LDELLYALAELL 328 (329)
T ss_pred HHHHHHHHHHHh
Confidence 999999998765
|
This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal. |
| >cd00881 GTP_translation_factor GTP translation factor family | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.6e-24 Score=144.40 Aligned_cols=155 Identities=19% Similarity=0.123 Sum_probs=109.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCccccc--------------eeEEEeEEEEEecCcEEEEEEEeCCCccccccccc
Q 030504 15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPT--------------IGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRD 80 (176)
Q Consensus 15 ~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~ 80 (176)
+|+++|.+|+|||||++++...........+ .+.+........+.....+.+|||||+..+...+.
T Consensus 1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~ 80 (189)
T cd00881 1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFEWPDRRVNFIDTPGHEDFSSEVI 80 (189)
T ss_pred CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEEeeCCEEEEEEeCCCcHHHHHHHH
Confidence 5899999999999999998776554332111 12222222223333456899999999988888888
Q ss_pred cccccccEEEEEEeCCChhhhhhHHHHHHHHhhhcCCCCEEEEEeCCCCCcccc----CHHHHHHHHH------------
Q 030504 81 GYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQV----KAKQVTFHRK------------ 144 (176)
Q Consensus 81 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~~~~~----~~~~~~~~~~------------ 144 (176)
.++..+|++++|+|++++...... .++..+.. .+.|+++++||+|+..... .....+..+.
T Consensus 81 ~~~~~~d~~i~v~d~~~~~~~~~~-~~~~~~~~--~~~~i~iv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (189)
T cd00881 81 RGLSVSDGAILVVDANEGVQPQTR-EHLRIARE--GGLPIIVAINKIDRVGEEDLEEVLREIKELLGLIGFISTKEEGTR 157 (189)
T ss_pred HHHHhcCEEEEEEECCCCCcHHHH-HHHHHHHH--CCCCeEEEEECCCCcchhcHHHHHHHHHHHHccccccchhhhhcc
Confidence 888999999999999876543322 23333333 4899999999999975222 1122233322
Q ss_pred --cCCeEEEeccCCCCChHHHHHHHHHHHh
Q 030504 145 --KNLQYYEISAKSNYNFEKPFLYLARKLA 172 (176)
Q Consensus 145 --~~~~~~~~S~~~~~~v~~~~~~l~~~i~ 172 (176)
...+++++||++|.|+++++.++.+.+.
T Consensus 158 ~~~~~~v~~~Sa~~g~gi~~l~~~l~~~l~ 187 (189)
T cd00881 158 NGLLVPIVPGSALTGIGVEELLEAIVEHLP 187 (189)
T ss_pred cCCcceEEEEecccCcCHHHHHHHHHhhCC
Confidence 3578999999999999999999999874
|
This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function. |
| >cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1 | Back alignment and domain information |
|---|
Probab=99.93 E-value=4.7e-25 Score=145.49 Aligned_cols=151 Identities=14% Similarity=0.104 Sum_probs=102.5
Q ss_pred EEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCc-EEEEEEEeCCCccc----ccccc---ccccccccEE
Q 030504 18 IVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG-KIRFYCWDTAGQEK----FGGLR---DGYYIHGQCA 89 (176)
Q Consensus 18 i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~D~~g~~~----~~~~~---~~~~~~~~~~ 89 (176)
++|++|||||||++++.+...... ...+.+........... ...+.+|||||... .+..+ ...+..+|++
T Consensus 1 iiG~~~~GKStll~~l~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~d~i 78 (176)
T cd01881 1 LVGLPNVGKSTLLNALTNAKPKVA--NYPFTTLEPNLGVVEVPDGARIQVADIPGLIEGASEGRGLGNQFLAHIRRADAI 78 (176)
T ss_pred CCCCCCCcHHHHHHHHhcCCcccc--CCCceeecCcceEEEcCCCCeEEEEeccccchhhhcCCCccHHHHHHHhccCEE
Confidence 589999999999999887654111 11111222111112223 56789999999732 22222 2346789999
Q ss_pred EEEEeCCCh------hhhhhHHHHHHHHhhhc--------CCCCEEEEEeCCCCCccccCHHH--HHHHHHcCCeEEEec
Q 030504 90 IIMFDVTAR------LTYKNVPTWHRDLCRVC--------ENIPIVLCGNKVDVKNRQVKAKQ--VTFHRKKNLQYYEIS 153 (176)
Q Consensus 90 i~v~d~~~~------~s~~~~~~~~~~~~~~~--------~~~p~liv~nK~Dl~~~~~~~~~--~~~~~~~~~~~~~~S 153 (176)
++|+|++++ .+++....|...+.... .+.|+++|+||+|+......... .......+..++++|
T Consensus 79 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S 158 (176)
T cd01881 79 LHVVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTAKPVIYVLNKIDLDDAEELEEELVRELALEEGAEVVPIS 158 (176)
T ss_pred EEEEeccCCccccccCHHHHHHHHHHHHHHhhhhhHHHHHhhCCeEEEEEchhcCchhHHHHHHHHHHhcCCCCCEEEEe
Confidence 999999987 46666666666665432 37999999999999764433332 233444567899999
Q ss_pred cCCCCChHHHHHHHHHH
Q 030504 154 AKSNYNFEKPFLYLARK 170 (176)
Q Consensus 154 ~~~~~~v~~~~~~l~~~ 170 (176)
++++.|+++++++++..
T Consensus 159 a~~~~gl~~l~~~l~~~ 175 (176)
T cd01881 159 AKTEEGLDELIRAIYEL 175 (176)
T ss_pred hhhhcCHHHHHHHHHhh
Confidence 99999999999998764
|
Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to |
| >PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases | Back alignment and domain information |
|---|
Probab=99.93 E-value=6.5e-25 Score=136.05 Aligned_cols=114 Identities=28% Similarity=0.536 Sum_probs=87.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCC--CccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccccccccccEEEEE
Q 030504 15 KLVIVGDGGTGKTTFVKRHLTGEFE--KKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIM 92 (176)
Q Consensus 15 ~i~i~G~~~~GKttl~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 92 (176)
||+|+|.+|||||||++++..+.+. ..+.++.+.+..............+.+||++|++.+...+...+..+|++++|
T Consensus 1 kI~V~G~~g~GKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~ilv 80 (119)
T PF08477_consen 1 KIVVLGDSGVGKTSLIRRLCGGEFPDNSVPEETSEITIGVDVIVVDGDRQSLQFWDFGGQEEFYSQHQFFLKKADAVILV 80 (119)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS--------SSTTSCEEEEEEEETTEEEEEEEEEESSSHCHHCTSHHHHHHSCEEEEE
T ss_pred CEEEECcCCCCHHHHHHHHhcCCCcccccccccCCCcEEEEEEEecCCceEEEEEecCccceecccccchhhcCcEEEEE
Confidence 7999999999999999999988776 12223333334433445555666699999999998888888889999999999
Q ss_pred EeCCChhhhhhHHH---HHHHHhhhcCCCCEEEEEeCCC
Q 030504 93 FDVTARLTYKNVPT---WHRDLCRVCENIPIVLCGNKVD 128 (176)
Q Consensus 93 ~d~~~~~s~~~~~~---~~~~~~~~~~~~p~liv~nK~D 128 (176)
||++++.+++.+.. |+..+....++.|+++|+||.|
T Consensus 81 ~D~s~~~s~~~~~~~~~~l~~~~~~~~~~piilv~nK~D 119 (119)
T PF08477_consen 81 YDLSDPESLEYLSQLLKWLKNIRKRDKNIPIILVGNKSD 119 (119)
T ss_dssp EECCGHHHHHHHHHHHHHHHHHHHHSSCSEEEEEEE-TC
T ss_pred EcCCChHHHHHHHHHHHHHHHHHccCCCCCEEEEEeccC
Confidence 99999999988754 5666665567899999999998
|
They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A. |
| >PRK05291 trmE tRNA modification GTPase TrmE; Reviewed | Back alignment and domain information |
|---|
Probab=99.93 E-value=8.3e-25 Score=162.23 Aligned_cols=150 Identities=18% Similarity=0.194 Sum_probs=107.9
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccc--------ccccc
Q 030504 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGL--------RDGYY 83 (176)
Q Consensus 12 ~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~--------~~~~~ 83 (176)
..++|+++|.+|+|||||+|+++...... ..+..|++.......+...+..+.+|||||.+.+... ...++
T Consensus 214 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~-v~~~~gtT~d~~~~~i~~~g~~i~l~DT~G~~~~~~~ie~~gi~~~~~~~ 292 (449)
T PRK05291 214 EGLKVVIAGRPNVGKSSLLNALLGEERAI-VTDIAGTTRDVIEEHINLDGIPLRLIDTAGIRETDDEVEKIGIERSREAI 292 (449)
T ss_pred cCCEEEEECCCCCCHHHHHHHHhCCCCcc-cCCCCCcccccEEEEEEECCeEEEEEeCCCCCCCccHHHHHHHHHHHHHH
Confidence 45899999999999999999988665311 1222333443333333334567899999998754332 22357
Q ss_pred ccccEEEEEEeCCChhhhhhHHHHHHHHhhhcCCCCEEEEEeCCCCCccccCHHHHHHHHHcCCeEEEeccCCCCChHHH
Q 030504 84 IHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKP 163 (176)
Q Consensus 84 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~ 163 (176)
..+|++++|+|++++.+++....|.. ..+.|+++|+||+|+....... ...+.+++++|+++|.|++++
T Consensus 293 ~~aD~il~VvD~s~~~s~~~~~~l~~-----~~~~piiiV~NK~DL~~~~~~~------~~~~~~~i~iSAktg~GI~~L 361 (449)
T PRK05291 293 EEADLVLLVLDASEPLTEEDDEILEE-----LKDKPVIVVLNKADLTGEIDLE------EENGKPVIRISAKTGEGIDEL 361 (449)
T ss_pred HhCCEEEEEecCCCCCChhHHHHHHh-----cCCCCcEEEEEhhhccccchhh------hccCCceEEEEeeCCCCHHHH
Confidence 88999999999998877665443332 3588999999999997543221 344678999999999999999
Q ss_pred HHHHHHHHhc
Q 030504 164 FLYLARKLAG 173 (176)
Q Consensus 164 ~~~l~~~i~~ 173 (176)
++++.+.+.+
T Consensus 362 ~~~L~~~l~~ 371 (449)
T PRK05291 362 REAIKELAFG 371 (449)
T ss_pred HHHHHHHHhh
Confidence 9999987753
|
|
| >TIGR03156 GTP_HflX GTP-binding protein HflX | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.4e-24 Score=155.03 Aligned_cols=153 Identities=14% Similarity=0.087 Sum_probs=103.6
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccc---------cccccccc
Q 030504 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK---------FGGLRDGY 82 (176)
Q Consensus 12 ~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~---------~~~~~~~~ 82 (176)
..++|+++|.+|+|||||+|++.+........+....+.....+..+ .+..+.+|||+|..+ +.... ..
T Consensus 188 ~~~~ValvG~~NvGKSSLln~L~~~~~~v~~~~~tT~d~~~~~i~~~-~~~~i~l~DT~G~~~~l~~~lie~f~~tl-e~ 265 (351)
T TIGR03156 188 DVPTVALVGYTNAGKSTLFNALTGADVYAADQLFATLDPTTRRLDLP-DGGEVLLTDTVGFIRDLPHELVAAFRATL-EE 265 (351)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCceeeccCCccccCCEEEEEEeC-CCceEEEEecCcccccCCHHHHHHHHHHH-HH
Confidence 34899999999999999999988765422111111122223333343 235789999999721 22211 23
Q ss_pred cccccEEEEEEeCCChhhhhhHHHHHHHHhhhc-CCCCEEEEEeCCCCCccccCHHHHHHHHHcCCeEEEeccCCCCChH
Q 030504 83 YIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFE 161 (176)
Q Consensus 83 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~liv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~ 161 (176)
+.++|++++|+|++++.+.+....|...+.... .+.|+++|+||+|+.+... . ........+++++||++|.|++
T Consensus 266 ~~~ADlil~VvD~s~~~~~~~~~~~~~~L~~l~~~~~piIlV~NK~Dl~~~~~---v-~~~~~~~~~~i~iSAktg~GI~ 341 (351)
T TIGR03156 266 VREADLLLHVVDASDPDREEQIEAVEKVLEELGAEDIPQLLVYNKIDLLDEPR---I-ERLEEGYPEAVFVSAKTGEGLD 341 (351)
T ss_pred HHhCCEEEEEEECCCCchHHHHHHHHHHHHHhccCCCCEEEEEEeecCCChHh---H-HHHHhCCCCEEEEEccCCCCHH
Confidence 678999999999999887776655555444432 4789999999999965321 1 1111223568999999999999
Q ss_pred HHHHHHHHH
Q 030504 162 KPFLYLARK 170 (176)
Q Consensus 162 ~~~~~l~~~ 170 (176)
+++++|.+.
T Consensus 342 eL~~~I~~~ 350 (351)
T TIGR03156 342 LLLEAIAER 350 (351)
T ss_pred HHHHHHHhh
Confidence 999998764
|
This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like). |
| >PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.3e-24 Score=138.37 Aligned_cols=147 Identities=16% Similarity=0.193 Sum_probs=100.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccc------ccccccc--cc
Q 030504 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFG------GLRDGYY--IH 85 (176)
Q Consensus 14 ~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~------~~~~~~~--~~ 85 (176)
++|+++|.|++|||||.|++.+.+... ....|.|.......+......+.++|+||.-... .....++ ..
T Consensus 1 i~ialvG~PNvGKStLfN~Ltg~~~~v--~n~pG~Tv~~~~g~~~~~~~~~~lvDlPG~ysl~~~s~ee~v~~~~l~~~~ 78 (156)
T PF02421_consen 1 IRIALVGNPNVGKSTLFNALTGAKQKV--GNWPGTTVEKKEGIFKLGDQQVELVDLPGIYSLSSKSEEERVARDYLLSEK 78 (156)
T ss_dssp -EEEEEESTTSSHHHHHHHHHTTSEEE--EESTTSSSEEEEEEEEETTEEEEEEE----SSSSSSSHHHHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCcee--cCCCCCCeeeeeEEEEecCceEEEEECCCcccCCCCCcHHHHHHHHHhhcC
Confidence 589999999999999999977655332 3334444554444333334678899999943222 2223333 57
Q ss_pred ccEEEEEEeCCChhhhhhHHHHHHHHhhhcCCCCEEEEEeCCCCCc-cccCHHHHHHHHHcCCeEEEeccCCCCChHHHH
Q 030504 86 GQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKN-RQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPF 164 (176)
Q Consensus 86 ~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~ 164 (176)
.|++++|+|+++.+ .-..+..++.+. +.|+++++||.|... .....+...+.+..+++++.+||++++|+++++
T Consensus 79 ~D~ii~VvDa~~l~---r~l~l~~ql~e~--g~P~vvvlN~~D~a~~~g~~id~~~Ls~~Lg~pvi~~sa~~~~g~~~L~ 153 (156)
T PF02421_consen 79 PDLIIVVVDATNLE---RNLYLTLQLLEL--GIPVVVVLNKMDEAERKGIEIDAEKLSERLGVPVIPVSARTGEGIDELK 153 (156)
T ss_dssp SSEEEEEEEGGGHH---HHHHHHHHHHHT--TSSEEEEEETHHHHHHTTEEE-HHHHHHHHTS-EEEEBTTTTBTHHHHH
T ss_pred CCEEEEECCCCCHH---HHHHHHHHHHHc--CCCEEEEEeCHHHHHHcCCEECHHHHHHHhCCCEEEEEeCCCcCHHHHH
Confidence 89999999998753 222344455554 899999999999875 344456778888899999999999999999998
Q ss_pred HHH
Q 030504 165 LYL 167 (176)
Q Consensus 165 ~~l 167 (176)
+.+
T Consensus 154 ~~I 156 (156)
T PF02421_consen 154 DAI 156 (156)
T ss_dssp HHH
T ss_pred hhC
Confidence 764
|
FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B .... |
| >PRK03003 GTP-binding protein Der; Reviewed | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.5e-24 Score=161.06 Aligned_cols=156 Identities=17% Similarity=0.167 Sum_probs=106.7
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeE--EEEEecCcEEEEEEEeCCCcccc----------ccc
Q 030504 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHP--LDFFTNCGKIRFYCWDTAGQEKF----------GGL 78 (176)
Q Consensus 11 ~~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~D~~g~~~~----------~~~ 78 (176)
...++|+++|.+++|||||+++++...... ..+..|++... ..+..++ ..+.+|||||..+. ...
T Consensus 209 ~~~~kI~iiG~~nvGKSSLin~l~~~~~~~-~s~~~gtT~d~~~~~~~~~~--~~~~l~DTaG~~~~~~~~~~~e~~~~~ 285 (472)
T PRK03003 209 GGPRRVALVGKPNVGKSSLLNKLAGEERSV-VDDVAGTTVDPVDSLIELGG--KTWRFVDTAGLRRRVKQASGHEYYASL 285 (472)
T ss_pred ccceEEEEECCCCCCHHHHHHHHhCCCccc-ccCCCCccCCcceEEEEECC--EEEEEEECCCccccccccchHHHHHHH
Confidence 356899999999999999999988765421 12333334333 3333443 45679999996321 111
Q ss_pred -cccccccccEEEEEEeCCChhhhhhHHHHHHHHhhhcCCCCEEEEEeCCCCCccccCH----HHHH-HHHHcCCeEEEe
Q 030504 79 -RDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKA----KQVT-FHRKKNLQYYEI 152 (176)
Q Consensus 79 -~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~~~~~~~----~~~~-~~~~~~~~~~~~ 152 (176)
...+++.+|++++|+|++++.+++... ++..+.. .+.|+++|+||+|+....... +... +.....++++++
T Consensus 286 ~~~~~i~~ad~vilV~Da~~~~s~~~~~-~~~~~~~--~~~piIiV~NK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~~~ 362 (472)
T PRK03003 286 RTHAAIEAAEVAVVLIDASEPISEQDQR-VLSMVIE--AGRALVLAFNKWDLVDEDRRYYLEREIDRELAQVPWAPRVNI 362 (472)
T ss_pred HHHHHHhcCCEEEEEEeCCCCCCHHHHH-HHHHHHH--cCCCEEEEEECcccCChhHHHHHHHHHHHhcccCCCCCEEEE
Confidence 123467899999999999987777663 3344433 389999999999997532111 1111 122234789999
Q ss_pred ccCCCCChHHHHHHHHHHHh
Q 030504 153 SAKSNYNFEKPFLYLARKLA 172 (176)
Q Consensus 153 S~~~~~~v~~~~~~l~~~i~ 172 (176)
||++|.|++++|..+.+.+.
T Consensus 363 SAk~g~gv~~lf~~i~~~~~ 382 (472)
T PRK03003 363 SAKTGRAVDKLVPALETALE 382 (472)
T ss_pred ECCCCCCHHHHHHHHHHHHH
Confidence 99999999999999988764
|
|
| >cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2) | Back alignment and domain information |
|---|
Probab=99.92 E-value=3.5e-24 Score=144.22 Aligned_cols=113 Identities=16% Similarity=0.159 Sum_probs=80.0
Q ss_pred EEEEEEeCCCccccccccccccccccEEEEEEeCCChhhhhhHHHHHHHHhhhcCCCCEEEEEeCCCCCccccC----HH
Q 030504 62 IRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVK----AK 137 (176)
Q Consensus 62 ~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~~~~~~----~~ 137 (176)
..+.+|||||++.+...+...+..+|++++|+|++++.........+..+... ...|+++|+||.|+.+.... .+
T Consensus 83 ~~i~~iDtPG~~~~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l~~~~~~-~~~~iiivvNK~Dl~~~~~~~~~~~~ 161 (203)
T cd01888 83 RHVSFVDCPGHEILMATMLSGAAVMDGALLLIAANEPCPQPQTSEHLAALEIM-GLKHIIIVQNKIDLVKEEQALENYEQ 161 (203)
T ss_pred cEEEEEECCChHHHHHHHHHhhhcCCEEEEEEECCCCCCCcchHHHHHHHHHc-CCCcEEEEEEchhccCHHHHHHHHHH
Confidence 67899999999988777777778899999999999742111112222222222 23579999999999753221 12
Q ss_pred HHHHHHH---cCCeEEEeccCCCCChHHHHHHHHHHHhcCC
Q 030504 138 QVTFHRK---KNLQYYEISAKSNYNFEKPFLYLARKLAGST 175 (176)
Q Consensus 138 ~~~~~~~---~~~~~~~~S~~~~~~v~~~~~~l~~~i~~~~ 175 (176)
..+++.. .+++++++||++|+|++++|+++.+.+.+.|
T Consensus 162 i~~~~~~~~~~~~~i~~vSA~~g~gi~~L~~~l~~~l~~~~ 202 (203)
T cd01888 162 IKKFVKGTIAENAPIIPISAQLKYNIDVLLEYIVKKIPTPP 202 (203)
T ss_pred HHHHHhccccCCCcEEEEeCCCCCCHHHHHHHHHHhCCCCC
Confidence 2233333 2578999999999999999999999888755
|
eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel |
| >TIGR00487 IF-2 translation initiation factor IF-2 | Back alignment and domain information |
|---|
Probab=99.92 E-value=9.8e-24 Score=160.10 Aligned_cols=157 Identities=13% Similarity=0.138 Sum_probs=110.0
Q ss_pred CCCCeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccccccccccE
Q 030504 9 VDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQC 88 (176)
Q Consensus 9 ~~~~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~ 88 (176)
..++..+|+++|++++|||||++++..+++.....+....+.....+...+. ..+.+||||||+.|..++...+..+|+
T Consensus 83 ~~~r~p~V~I~Ghvd~GKTSLl~~l~~~~v~~~e~~GIT~~ig~~~v~~~~~-~~i~~iDTPGhe~F~~~r~rga~~aDi 161 (587)
T TIGR00487 83 LVERPPVVTIMGHVDHGKTSLLDSIRKTKVAQGEAGGITQHIGAYHVENEDG-KMITFLDTPGHEAFTSMRARGAKVTDI 161 (587)
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHHhCCcccccCCceeecceEEEEEECCC-cEEEEEECCCCcchhhHHHhhhccCCE
Confidence 3456679999999999999999998887765543333222222233333222 278999999999999988888999999
Q ss_pred EEEEEeCCChhhhhhHHHHHHHHhhhcCCCCEEEEEeCCCCCccccCHHHHHHHHHc---------CCeEEEeccCCCCC
Q 030504 89 AIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKK---------NLQYYEISAKSNYN 159 (176)
Q Consensus 89 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~~~~~~~~~~~~~~~~---------~~~~~~~S~~~~~~ 159 (176)
+++|+|+++....+....+ ..... .+.|+++++||+|+.+... .+....+... ..+++++||++|+|
T Consensus 162 aILVVda~dgv~~qT~e~i-~~~~~--~~vPiIVviNKiDl~~~~~-e~v~~~L~~~g~~~~~~~~~~~~v~iSAktGeG 237 (587)
T TIGR00487 162 VVLVVAADDGVMPQTIEAI-SHAKA--ANVPIIVAINKIDKPEANP-DRVKQELSEYGLVPEDWGGDTIFVPVSALTGDG 237 (587)
T ss_pred EEEEEECCCCCCHhHHHHH-HHHHH--cCCCEEEEEECcccccCCH-HHHHHHHHHhhhhHHhcCCCceEEEEECCCCCC
Confidence 9999999875433333222 22222 3889999999999965322 1122222222 25799999999999
Q ss_pred hHHHHHHHHHH
Q 030504 160 FEKPFLYLARK 170 (176)
Q Consensus 160 v~~~~~~l~~~ 170 (176)
++++|+++...
T Consensus 238 I~eLl~~I~~~ 248 (587)
T TIGR00487 238 IDELLDMILLQ 248 (587)
T ss_pred hHHHHHhhhhh
Confidence 99999998753
|
This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU. |
| >KOG3883 consensus Ras family small GTPase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.2e-23 Score=129.69 Aligned_cols=163 Identities=21% Similarity=0.343 Sum_probs=130.7
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHhcCCCCC--ccccceeEEEeEEEEEecCcEEEEEEEeCCCcccc-ccccccccccccE
Q 030504 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEK--KYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKF-GGLRDGYYIHGQC 88 (176)
Q Consensus 12 ~~~~i~i~G~~~~GKttl~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~-~~~~~~~~~~~~~ 88 (176)
..-|++++|..++|||+++.+++.|+... ++.||+...+....-+..+..-.+.++||.|...+ ..+-++|+.-+|+
T Consensus 8 k~~kVvVcG~k~VGKTaileQl~yg~~~~~~e~~pTiEDiY~~svet~rgarE~l~lyDTaGlq~~~~eLprhy~q~aDa 87 (198)
T KOG3883|consen 8 KVCKVVVCGMKSVGKTAILEQLLYGNHVPGTELHPTIEDIYVASVETDRGAREQLRLYDTAGLQGGQQELPRHYFQFADA 87 (198)
T ss_pred cceEEEEECCccccHHHHHHHHHhccCCCCCccccchhhheeEeeecCCChhheEEEeecccccCchhhhhHhHhccCce
Confidence 35689999999999999999999888754 34556654444333334445557999999998877 5788899999999
Q ss_pred EEEEEeCCChhhhhhHHHHHHHHhhhc--CCCCEEEEEeCCCCCc-cccC-HHHHHHHHHcCCeEEEeccCCCCChHHHH
Q 030504 89 AIIMFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKN-RQVK-AKQVTFHRKKNLQYYEISAKSNYNFEKPF 164 (176)
Q Consensus 89 ~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~liv~nK~Dl~~-~~~~-~~~~~~~~~~~~~~~~~S~~~~~~v~~~~ 164 (176)
+++||+..+++||+.+..+...+.+.. ...|+++++||+|+.. +... .-+..|+++..+.++++++.+...+-|.|
T Consensus 88 fVLVYs~~d~eSf~rv~llKk~Idk~KdKKEvpiVVLaN~rdr~~p~~vd~d~A~~Wa~rEkvkl~eVta~dR~sL~epf 167 (198)
T KOG3883|consen 88 FVLVYSPMDPESFQRVELLKKEIDKHKDKKEVPIVVLANKRDRAEPREVDMDVAQIWAKREKVKLWEVTAMDRPSLYEPF 167 (198)
T ss_pred EEEEecCCCHHHHHHHHHHHHHHhhccccccccEEEEechhhcccchhcCHHHHHHHHhhhheeEEEEEeccchhhhhHH
Confidence 999999999999998876666665432 5789999999999963 3333 34668899999999999999999999999
Q ss_pred HHHHHHHhcC
Q 030504 165 LYLARKLAGS 174 (176)
Q Consensus 165 ~~l~~~i~~~ 174 (176)
-+++..+.+.
T Consensus 168 ~~l~~rl~~p 177 (198)
T KOG3883|consen 168 TYLASRLHQP 177 (198)
T ss_pred HHHHHhccCC
Confidence 9999987654
|
|
| >KOG0074 consensus GTP-binding ADP-ribosylation factor-like protein ARL3 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.5e-24 Score=131.88 Aligned_cols=159 Identities=20% Similarity=0.310 Sum_probs=127.9
Q ss_pred CCCeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccccccccccEE
Q 030504 10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCA 89 (176)
Q Consensus 10 ~~~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~ 89 (176)
..+++||+++|..++|||||+.+ +.+..+....||.|+....... ...+.+.+||.+|+...+..|..||.+.|++
T Consensus 14 t~rEirilllGldnAGKTT~LKq-L~sED~~hltpT~GFn~k~v~~---~g~f~LnvwDiGGqr~IRpyWsNYyenvd~l 89 (185)
T KOG0074|consen 14 TRREIRILLLGLDNAGKTTFLKQ-LKSEDPRHLTPTNGFNTKKVEY---DGTFHLNVWDIGGQRGIRPYWSNYYENVDGL 89 (185)
T ss_pred CcceEEEEEEecCCCcchhHHHH-HccCChhhccccCCcceEEEee---cCcEEEEEEecCCccccchhhhhhhhccceE
Confidence 36789999999999999999998 7777777778888866555443 2458999999999999999999999999999
Q ss_pred EEEEeCCChhhhhhHHHHHHHHhhh--cCCCCEEEEEeCCCCCccccCHHHH-----HHHHHcCCeEEEeccCCCCChHH
Q 030504 90 IIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQV-----TFHRKKNLQYYEISAKSNYNFEK 162 (176)
Q Consensus 90 i~v~d~~~~~s~~~~~~~~~~~~~~--~~~~p~liv~nK~Dl~~~~~~~~~~-----~~~~~~~~~~~~~S~~~~~~v~~ 162 (176)
|||+|.+|...|+++...+-.+.+. ....|+++.+||.|+......++.. ...+...+.+-+||+++++|+.+
T Consensus 90 IyVIDS~D~krfeE~~~el~ELleeeKl~~vpvlIfankQdlltaa~~eeia~klnl~~lrdRswhIq~csals~eg~~d 169 (185)
T KOG0074|consen 90 IYVIDSTDEKRFEEISEELVELLEEEKLAEVPVLIFANKQDLLTAAKVEEIALKLNLAGLRDRSWHIQECSALSLEGSTD 169 (185)
T ss_pred EEEEeCCchHhHHHHHHHHHHHhhhhhhhccceeehhhhhHHHhhcchHHHHHhcchhhhhhceEEeeeCccccccCccC
Confidence 9999999998888777555555433 3589999999999987654443322 23344567889999999999999
Q ss_pred HHHHHHHHHh
Q 030504 163 PFLYLARKLA 172 (176)
Q Consensus 163 ~~~~l~~~i~ 172 (176)
-..|+++...
T Consensus 170 g~~wv~sn~~ 179 (185)
T KOG0074|consen 170 GSDWVQSNPE 179 (185)
T ss_pred cchhhhcCCC
Confidence 9999987654
|
|
| >TIGR03594 GTPase_EngA ribosome-associated GTPase EngA | Back alignment and domain information |
|---|
Probab=99.92 E-value=8.5e-24 Score=157.24 Aligned_cols=158 Identities=18% Similarity=0.178 Sum_probs=108.4
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCcccccccc-----------
Q 030504 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLR----------- 79 (176)
Q Consensus 11 ~~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~----------- 79 (176)
...++|+++|.+++|||||+++++...... ..+..|++...........+..+.+|||||..+.....
T Consensus 170 ~~~~~v~ivG~~~~GKSsLin~l~~~~~~~-~~~~~gtt~~~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~e~~~~~~~ 248 (429)
T TIGR03594 170 DGPIKIAIIGRPNVGKSTLVNALLGEERVI-VSDIAGTTRDSIDIPFERNGKKYLLIDTAGIRRKGKVTEGVEKYSVLRT 248 (429)
T ss_pred CCceEEEEECCCCCCHHHHHHHHHCCCeee-cCCCCCceECcEeEEEEECCcEEEEEECCCccccccchhhHHHHHHHHH
Confidence 456899999999999999999987654321 12334445544443333334478999999976544322
Q ss_pred ccccccccEEEEEEeCCChhhhhhHHHHHHHHhhhcCCCCEEEEEeCCCCC-ccccCHHHHHHH-HH----cCCeEEEec
Q 030504 80 DGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVK-NRQVKAKQVTFH-RK----KNLQYYEIS 153 (176)
Q Consensus 80 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~-~~~~~~~~~~~~-~~----~~~~~~~~S 153 (176)
..+++.+|++++|+|++++.+.+... ++..+... +.|+++|+||+|+. +.....+..... .. ..++++++|
T Consensus 249 ~~~~~~ad~~ilV~D~~~~~~~~~~~-~~~~~~~~--~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vi~~S 325 (429)
T TIGR03594 249 LKAIERADVVLLVLDATEGITEQDLR-IAGLILEA--GKALVIVVNKWDLVKDEKTREEFKKELRRKLPFLDFAPIVFIS 325 (429)
T ss_pred HHHHHhCCEEEEEEECCCCccHHHHH-HHHHHHHc--CCcEEEEEECcccCCCHHHHHHHHHHHHHhcccCCCCceEEEe
Confidence 23578899999999999887665543 33333333 79999999999997 222111221111 11 247899999
Q ss_pred cCCCCChHHHHHHHHHHHh
Q 030504 154 AKSNYNFEKPFLYLARKLA 172 (176)
Q Consensus 154 ~~~~~~v~~~~~~l~~~i~ 172 (176)
|++|.|++++|+++.+.+.
T Consensus 326 A~~g~~v~~l~~~i~~~~~ 344 (429)
T TIGR03594 326 ALTGQGVDKLLDAIDEVYE 344 (429)
T ss_pred CCCCCCHHHHHHHHHHHHH
Confidence 9999999999999988654
|
EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability. |
| >PRK12297 obgE GTPase CgtA; Reviewed | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.2e-23 Score=153.80 Aligned_cols=156 Identities=15% Similarity=0.156 Sum_probs=106.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCc-EEEEEEEeCCCccccc----cccccc---cccc
Q 030504 15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG-KIRFYCWDTAGQEKFG----GLRDGY---YIHG 86 (176)
Q Consensus 15 ~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~D~~g~~~~~----~~~~~~---~~~~ 86 (176)
.|+++|.++||||||++++...+... ....+++.......+... ...+.+||+||..... .+...+ +.++
T Consensus 160 dVglVG~pNaGKSTLLn~Lt~ak~kI--a~ypfTTl~PnlG~v~~~~~~~~~laD~PGliega~~~~gLg~~fLrhier~ 237 (424)
T PRK12297 160 DVGLVGFPNVGKSTLLSVVSNAKPKI--ANYHFTTLVPNLGVVETDDGRSFVMADIPGLIEGASEGVGLGHQFLRHIERT 237 (424)
T ss_pred cEEEEcCCCCCHHHHHHHHHcCCCcc--ccCCcceeceEEEEEEEeCCceEEEEECCCCcccccccchHHHHHHHHHhhC
Confidence 69999999999999999987655321 111222222222222112 4568999999964321 122223 4568
Q ss_pred cEEEEEEeCCCh---hhhhhHHHHHHHHhhhc---CCCCEEEEEeCCCCCccccCHHHHHHHHHcCCeEEEeccCCCCCh
Q 030504 87 QCAIIMFDVTAR---LTYKNVPTWHRDLCRVC---ENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNF 160 (176)
Q Consensus 87 ~~~i~v~d~~~~---~s~~~~~~~~~~~~~~~---~~~p~liv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v 160 (176)
+++++|+|+++. ..++....|...+.... .++|.++|+||+|+... ......+.+..+.+++++||++++|+
T Consensus 238 ~llI~VID~s~~~~~dp~e~~~~i~~EL~~y~~~L~~kP~IVV~NK~DL~~~--~e~l~~l~~~l~~~i~~iSA~tgeGI 315 (424)
T PRK12297 238 RVIVHVIDMSGSEGRDPIEDYEKINKELKLYNPRLLERPQIVVANKMDLPEA--EENLEEFKEKLGPKVFPISALTGQGL 315 (424)
T ss_pred CEEEEEEeCCccccCChHHHHHHHHHHHhhhchhccCCcEEEEEeCCCCcCC--HHHHHHHHHHhCCcEEEEeCCCCCCH
Confidence 999999999864 45566666666665432 47899999999998432 22334555566688999999999999
Q ss_pred HHHHHHHHHHHhcC
Q 030504 161 EKPFLYLARKLAGS 174 (176)
Q Consensus 161 ~~~~~~l~~~i~~~ 174 (176)
+++++++.+.+.+.
T Consensus 316 ~eL~~~L~~~l~~~ 329 (424)
T PRK12297 316 DELLYAVAELLEET 329 (424)
T ss_pred HHHHHHHHHHHHhC
Confidence 99999999887654
|
|
| >KOG0072 consensus GTP-binding ADP-ribosylation factor-like protein ARL1 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.92 E-value=6e-25 Score=133.97 Aligned_cols=158 Identities=22% Similarity=0.346 Sum_probs=127.5
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccccccccccEEEE
Q 030504 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAII 91 (176)
Q Consensus 12 ~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~ 91 (176)
.+.+|+++|.-|+||||+..++.-|+... ..|++|+....... +..++++||.+|+-..+..|+.|+.+.+++||
T Consensus 17 ~e~rililgldGaGkttIlyrlqvgevvt-tkPtigfnve~v~y----KNLk~~vwdLggqtSirPyWRcYy~dt~avIy 91 (182)
T KOG0072|consen 17 REMRILILGLDGAGKTTILYRLQVGEVVT-TKPTIGFNVETVPY----KNLKFQVWDLGGQTSIRPYWRCYYADTDAVIY 91 (182)
T ss_pred cceEEEEeeccCCCeeEEEEEcccCcccc-cCCCCCcCcccccc----ccccceeeEccCcccccHHHHHHhcccceEEE
Confidence 77899999999999999999977777654 46777765555443 88899999999999999999999999999999
Q ss_pred EEeCCChhhhhhHHHHHHHHhhh--cCCCCEEEEEeCCCCCccccCHHHH-----HHHHHcCCeEEEeccCCCCChHHHH
Q 030504 92 MFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQV-----TFHRKKNLQYYEISAKSNYNFEKPF 164 (176)
Q Consensus 92 v~d~~~~~s~~~~~~~~~~~~~~--~~~~p~liv~nK~Dl~~~~~~~~~~-----~~~~~~~~~~~~~S~~~~~~v~~~~ 164 (176)
|+|.+|.+..--....+..+.+. .....+++++||.|...+....+.. ...+...+.+|++||.+|+|+++++
T Consensus 92 VVDssd~dris~a~~el~~mL~E~eLq~a~llv~anKqD~~~~~t~~E~~~~L~l~~Lk~r~~~Iv~tSA~kg~Gld~~~ 171 (182)
T KOG0072|consen 92 VVDSSDRDRISIAGVELYSMLQEEELQHAKLLVFANKQDYSGALTRSEVLKMLGLQKLKDRIWQIVKTSAVKGEGLDPAM 171 (182)
T ss_pred EEeccchhhhhhhHHHHHHHhccHhhcCceEEEEeccccchhhhhHHHHHHHhChHHHhhheeEEEeeccccccCCcHHH
Confidence 99999988766555544444332 3577789999999998765544432 3345556899999999999999999
Q ss_pred HHHHHHHhcC
Q 030504 165 LYLARKLAGS 174 (176)
Q Consensus 165 ~~l~~~i~~~ 174 (176)
+|+.+.+.++
T Consensus 172 DWL~~~l~~~ 181 (182)
T KOG0072|consen 172 DWLQRPLKSR 181 (182)
T ss_pred HHHHHHHhcc
Confidence 9999988765
|
|
| >PRK15467 ethanolamine utilization protein EutP; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=3.5e-24 Score=138.73 Aligned_cols=140 Identities=17% Similarity=0.111 Sum_probs=96.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCcccccccc----ccccccccEEE
Q 030504 15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLR----DGYYIHGQCAI 90 (176)
Q Consensus 15 ~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~----~~~~~~~~~~i 90 (176)
+|+++|.+++|||||++++. |.+... ..+.++. .... .+|||||.......+ ...+.++|+++
T Consensus 3 ~i~~iG~~~~GKstl~~~l~-~~~~~~-~~~~~v~-------~~~~----~~iDtpG~~~~~~~~~~~~~~~~~~ad~il 69 (158)
T PRK15467 3 RIAFVGAVGAGKTTLFNALQ-GNYTLA-RKTQAVE-------FNDK----GDIDTPGEYFSHPRWYHALITTLQDVDMLI 69 (158)
T ss_pred EEEEECCCCCCHHHHHHHHc-CCCccC-ccceEEE-------ECCC----CcccCCccccCCHHHHHHHHHHHhcCCEEE
Confidence 79999999999999999954 544221 2222221 1112 269999973222111 22367999999
Q ss_pred EEEeCCChhhhhhHHHHHHHHhhhcCCCCEEEEEeCCCCCccccCHHHHHHHHHcCC--eEEEeccCCCCChHHHHHHHH
Q 030504 91 IMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNL--QYYEISAKSNYNFEKPFLYLA 168 (176)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~~~~~~~~~~~~~~~~~~--~~~~~S~~~~~~v~~~~~~l~ 168 (176)
+|+|+++..++.. .|+..+ ..+.|+++++||+|+.... .....+++...++ +++++||++++|++++|+++.
T Consensus 70 ~v~d~~~~~s~~~--~~~~~~---~~~~~ii~v~nK~Dl~~~~-~~~~~~~~~~~~~~~p~~~~Sa~~g~gi~~l~~~l~ 143 (158)
T PRK15467 70 YVHGANDPESRLP--AGLLDI---GVSKRQIAVISKTDMPDAD-VAATRKLLLETGFEEPIFELNSHDPQSVQQLVDYLA 143 (158)
T ss_pred EEEeCCCcccccC--HHHHhc---cCCCCeEEEEEccccCccc-HHHHHHHHHHcCCCCCEEEEECCCccCHHHHHHHHH
Confidence 9999998876533 233332 2478999999999996532 2334566667764 899999999999999999998
Q ss_pred HHHhc
Q 030504 169 RKLAG 173 (176)
Q Consensus 169 ~~i~~ 173 (176)
+.+.+
T Consensus 144 ~~~~~ 148 (158)
T PRK15467 144 SLTKQ 148 (158)
T ss_pred Hhchh
Confidence 87643
|
|
| >PRK00454 engB GTP-binding protein YsxC; Reviewed | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.1e-23 Score=141.33 Aligned_cols=159 Identities=14% Similarity=0.087 Sum_probs=107.4
Q ss_pred CCCCeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccc----------cccc
Q 030504 9 VDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK----------FGGL 78 (176)
Q Consensus 9 ~~~~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~----------~~~~ 78 (176)
......+|+++|.+|+|||||++++..+.+...+.++.|.+........ ...+.+|||||... +...
T Consensus 20 ~~~~~~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~---~~~l~l~DtpG~~~~~~~~~~~~~~~~~ 96 (196)
T PRK00454 20 PPDDGPEIAFAGRSNVGKSSLINALTNRKNLARTSKTPGRTQLINFFEV---NDKLRLVDLPGYGYAKVSKEEKEKWQKL 96 (196)
T ss_pred CCCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCceeEEEEEec---CCeEEEeCCCCCCCcCCCchHHHHHHHH
Confidence 4456789999999999999999998877666566666665544333322 35789999999532 2222
Q ss_pred cccccc---cccEEEEEEeCCChhhhhhHHHHHHHHhhhcCCCCEEEEEeCCCCCccccCHH----HHHHHHHcCCeEEE
Q 030504 79 RDGYYI---HGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAK----QVTFHRKKNLQYYE 151 (176)
Q Consensus 79 ~~~~~~---~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~~~~~~~~----~~~~~~~~~~~~~~ 151 (176)
...++. ..+++++|+|.+++.+.... .....+.. .+.|+++++||+|+......+. ...........+++
T Consensus 97 ~~~~~~~~~~~~~~~~v~d~~~~~~~~~~-~i~~~l~~--~~~~~iiv~nK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~ 173 (196)
T PRK00454 97 IEEYLRTRENLKGVVLLIDSRHPLKELDL-QMIEWLKE--YGIPVLIVLTKADKLKKGERKKQLKKVRKALKFGDDEVIL 173 (196)
T ss_pred HHHHHHhCccceEEEEEEecCCCCCHHHH-HHHHHHHH--cCCcEEEEEECcccCCHHHHHHHHHHHHHHHHhcCCceEE
Confidence 233333 34688889998875433221 11222222 3789999999999865332221 22333334688999
Q ss_pred eccCCCCChHHHHHHHHHHHhc
Q 030504 152 ISAKSNYNFEKPFLYLARKLAG 173 (176)
Q Consensus 152 ~S~~~~~~v~~~~~~l~~~i~~ 173 (176)
+|++++.|+++++++|.+.+.+
T Consensus 174 ~Sa~~~~gi~~l~~~i~~~~~~ 195 (196)
T PRK00454 174 FSSLKKQGIDELRAAIAKWLAE 195 (196)
T ss_pred EEcCCCCCHHHHHHHHHHHhcC
Confidence 9999999999999999987765
|
|
| >cd04163 Era Era subfamily | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.4e-23 Score=135.21 Aligned_cols=155 Identities=15% Similarity=0.118 Sum_probs=102.7
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCcccccc--------cccccc
Q 030504 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGG--------LRDGYY 83 (176)
Q Consensus 12 ~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~--------~~~~~~ 83 (176)
...+|+++|++|+|||||++++++...... .+....+..............+.+|||||...... .....+
T Consensus 2 ~~~~i~~~G~~g~GKttl~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~ 80 (168)
T cd04163 2 KSGFVAIVGRPNVGKSTLLNALVGQKISIV-SPKPQTTRNRIRGIYTDDDAQIIFVDTPGIHKPKKKLGERMVKAAWSAL 80 (168)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhCCceEec-cCCCCceeceEEEEEEcCCeEEEEEECCCCCcchHHHHHHHHHHHHHHH
Confidence 357899999999999999999776543211 11112222222223334456789999999764332 223457
Q ss_pred ccccEEEEEEeCCChhhhhhHHHHHHHHhhhcCCCCEEEEEeCCCCCc-cccCHHHH-HHHHHc-CCeEEEeccCCCCCh
Q 030504 84 IHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKN-RQVKAKQV-TFHRKK-NLQYYEISAKSNYNF 160 (176)
Q Consensus 84 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~~-~~~~~~~~-~~~~~~-~~~~~~~S~~~~~~v 160 (176)
..+|++++|+|++++.+ +....+...+... +.|+++|+||+|+.. .....+.. .+.... ..+++++|++++.|+
T Consensus 81 ~~~d~i~~v~d~~~~~~-~~~~~~~~~~~~~--~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~ 157 (168)
T cd04163 81 KDVDLVLFVVDASEPIG-EGDEFILELLKKS--KTPVILVLNKIDLVKDKEDLLPLLEKLKELGPFAEIFPISALKGENV 157 (168)
T ss_pred HhCCEEEEEEECCCccC-chHHHHHHHHHHh--CCCEEEEEEchhccccHHHHHHHHHHHHhccCCCceEEEEeccCCCh
Confidence 78999999999998721 1122233333333 689999999999974 33333333 333333 368999999999999
Q ss_pred HHHHHHHHHH
Q 030504 161 EKPFLYLARK 170 (176)
Q Consensus 161 ~~~~~~l~~~ 170 (176)
++++++|.+.
T Consensus 158 ~~l~~~l~~~ 167 (168)
T cd04163 158 DELLEEIVKY 167 (168)
T ss_pred HHHHHHHHhh
Confidence 9999999765
|
Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA. |
| >cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta) | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.9e-23 Score=140.52 Aligned_cols=154 Identities=16% Similarity=0.222 Sum_probs=108.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccccccccc-cEEEEEE
Q 030504 15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHG-QCAIIMF 93 (176)
Q Consensus 15 ~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~-~~~i~v~ 93 (176)
+|+++|+++||||||++++..+.+...+.++. ................+.+||+||+++++..+..+++.+ +++|+|+
T Consensus 2 ~vll~G~~~sGKTsL~~~l~~~~~~~t~~s~~-~~~~~~~~~~~~~~~~~~l~D~pG~~~~~~~~~~~~~~~~~~vV~Vv 80 (203)
T cd04105 2 TVLLLGPSDSGKTALFTKLTTGKYRSTVTSIE-PNVATFILNSEGKGKKFRLVDVPGHPKLRDKLLETLKNSAKGIVFVV 80 (203)
T ss_pred eEEEEcCCCCCHHHHHHHHhcCCCCCccCcEe-ecceEEEeecCCCCceEEEEECCCCHHHHHHHHHHHhccCCEEEEEE
Confidence 68999999999999999999888766654442 222222222224567799999999999988888888998 9999999
Q ss_pred eCCCh-hhhhhHHHHHHHHhhh----cCCCCEEEEEeCCCCCccccCHHHH--------HHHH-----------------
Q 030504 94 DVTAR-LTYKNVPTWHRDLCRV----CENIPIVLCGNKVDVKNRQVKAKQV--------TFHR----------------- 143 (176)
Q Consensus 94 d~~~~-~s~~~~~~~~~~~~~~----~~~~p~liv~nK~Dl~~~~~~~~~~--------~~~~----------------- 143 (176)
|+.+. .++..+..|+..+... .++.|+++++||+|+.......... .+..
T Consensus 81 D~~~~~~~~~~~~~~l~~il~~~~~~~~~~pvliv~NK~Dl~~a~~~~~i~~~le~ei~~~~~~r~~~l~~~~~~~~~~~ 160 (203)
T cd04105 81 DSATFQKNLKDVAEFLYDILTDLEKVKNKIPVLIACNKQDLFTAKPAKKIKEQLEKELNTLRESRSKSLSSLDGDEGSKE 160 (203)
T ss_pred ECccchhHHHHHHHHHHHHHHHHhhccCCCCEEEEecchhhcccCCHHHHHHHHHHHHHHHHHHHhcccccccccccccc
Confidence 99987 6666666555444321 2589999999999987533211100 0000
Q ss_pred ---------------HcCCeEEEeccCCCC-ChHHHHHHHHH
Q 030504 144 ---------------KKNLQYYEISAKSNY-NFEKPFLYLAR 169 (176)
Q Consensus 144 ---------------~~~~~~~~~S~~~~~-~v~~~~~~l~~ 169 (176)
...+.+.++|++.+. |++.+.+|+.+
T Consensus 161 ~~~~~~~~~f~f~~~~~~v~~~~~s~~~~~~~~~~~~~w~~~ 202 (203)
T cd04105 161 SLGDKGGKSFEFDQLEGKVEFLEGSVKVDGGGIDGWEEWIDE 202 (203)
T ss_pred ccccccCcceeeccCceeEEEEEeEEecCCCChHhHHHHHhh
Confidence 011347889998776 69999999864
|
SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ |
| >cd01895 EngA2 EngA2 subfamily | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.5e-23 Score=136.08 Aligned_cols=154 Identities=19% Similarity=0.198 Sum_probs=100.3
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCcccccc-----------cccc
Q 030504 13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGG-----------LRDG 81 (176)
Q Consensus 13 ~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~-----------~~~~ 81 (176)
.++|+++|.+|+|||||+++++....... ....+.+...........+..+.+|||||...... ....
T Consensus 2 ~~~i~i~G~~~~GKstli~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~e~~~~~~~~~ 80 (174)
T cd01895 2 PIRIAIIGRPNVGKSSLVNALLGEERVIV-SDIAGTTRDSIDVPFEYDGKKYTLIDTAGIRRKGKVEEGIEKYSVLRTLK 80 (174)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCccceec-cCCCCCccCceeeEEEECCeeEEEEECCCCccccchhccHHHHHHHHHHH
Confidence 58999999999999999999876543211 11122222222222222334578999999754311 1122
Q ss_pred ccccccEEEEEEeCCChhhhhhHHHHHHHHhhhcCCCCEEEEEeCCCCCccc--cCHHHH-HHHHHc----CCeEEEecc
Q 030504 82 YYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQ--VKAKQV-TFHRKK----NLQYYEISA 154 (176)
Q Consensus 82 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~~~~--~~~~~~-~~~~~~----~~~~~~~S~ 154 (176)
.+..+|++++|+|++++.+.... .+...+.. .+.|+++++||+|+.+.. ...... ...+.. ..+++++|+
T Consensus 81 ~~~~~d~vi~v~d~~~~~~~~~~-~~~~~~~~--~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 157 (174)
T cd01895 81 AIERADVVLLVIDATEGITEQDL-RIAGLILE--EGKALVIVVNKWDLVEKDSKTMKEFKKEIRRKLPFLDYAPIVFISA 157 (174)
T ss_pred HHhhcCeEEEEEeCCCCcchhHH-HHHHHHHh--cCCCEEEEEeccccCCccHHHHHHHHHHHHhhcccccCCceEEEec
Confidence 45689999999999988665443 22333333 378999999999997652 222212 222222 368999999
Q ss_pred CCCCChHHHHHHHHHH
Q 030504 155 KSNYNFEKPFLYLARK 170 (176)
Q Consensus 155 ~~~~~v~~~~~~l~~~ 170 (176)
+++.|++++++++.+.
T Consensus 158 ~~~~~i~~~~~~l~~~ 173 (174)
T cd01895 158 LTGQGVDKLFDAIDEV 173 (174)
T ss_pred cCCCCHHHHHHHHHHh
Confidence 9999999999998764
|
This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability. |
| >PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.7e-24 Score=142.59 Aligned_cols=158 Identities=19% Similarity=0.180 Sum_probs=109.6
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHhcCCC--CC--------------ccccceeEEEeEEEEEec--CcEEEEEEEeCCCcc
Q 030504 12 PSFKLVIVGDGGTGKTTFVKRHLTGEF--EK--------------KYEPTIGVEVHPLDFFTN--CGKIRFYCWDTAGQE 73 (176)
Q Consensus 12 ~~~~i~i~G~~~~GKttl~~~~~~~~~--~~--------------~~~~~~~~~~~~~~~~~~--~~~~~~~~~D~~g~~ 73 (176)
+.++|+++|+.++|||||+.+++.... .. ......+.+......... .....+.++|+||+.
T Consensus 2 ~~~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~~~~~~~~~~~~~i~~iDtPG~~ 81 (188)
T PF00009_consen 2 NIRNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDLSFISFEKNENNRKITLIDTPGHE 81 (188)
T ss_dssp TEEEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSEEEEEEBTESSEEEEEEEESSSH
T ss_pred CEEEEEEECCCCCCcEeechhhhhhccccccccccccccccccccchhhhcccccccccccccccccccceeeccccccc
Confidence 568999999999999999999875331 11 001112223333333333 567789999999999
Q ss_pred ccccccccccccccEEEEEEeCCChhhhhhHHHHHHHHhhhcCCCCEEEEEeCCCCCccccCHHH---H-HHHHHc----
Q 030504 74 KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQ---V-TFHRKK---- 145 (176)
Q Consensus 74 ~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~~~~~~~~~---~-~~~~~~---- 145 (176)
.+.......+..+|++|+|+|+.++...+.. ..+..+... +.|+++++||+|+......... . .+.+..
T Consensus 82 ~f~~~~~~~~~~~D~ailvVda~~g~~~~~~-~~l~~~~~~--~~p~ivvlNK~D~~~~~~~~~~~~~~~~l~~~~~~~~ 158 (188)
T PF00009_consen 82 DFIKEMIRGLRQADIAILVVDANDGIQPQTE-EHLKILREL--GIPIIVVLNKMDLIEKELEEIIEEIKEKLLKEYGENG 158 (188)
T ss_dssp HHHHHHHHHHTTSSEEEEEEETTTBSTHHHH-HHHHHHHHT--T-SEEEEEETCTSSHHHHHHHHHHHHHHHHHHTTSTT
T ss_pred ceeecccceecccccceeeeecccccccccc-ccccccccc--ccceEEeeeeccchhhhHHHHHHHHHHHhccccccCc
Confidence 9888777778999999999999977443332 333344444 8899999999999843322222 2 233333
Q ss_pred --CCeEEEeccCCCCChHHHHHHHHHHHh
Q 030504 146 --NLQYYEISAKSNYNFEKPFLYLARKLA 172 (176)
Q Consensus 146 --~~~~~~~S~~~~~~v~~~~~~l~~~i~ 172 (176)
.++++.+||++|.|++++++.+.+.+.
T Consensus 159 ~~~~~vi~~Sa~~g~gi~~Ll~~l~~~~P 187 (188)
T PF00009_consen 159 EEIVPVIPISALTGDGIDELLEALVELLP 187 (188)
T ss_dssp TSTEEEEEEBTTTTBTHHHHHHHHHHHS-
T ss_pred cccceEEEEecCCCCCHHHHHHHHHHhCc
Confidence 357999999999999999999988753
|
The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C .... |
| >PRK05433 GTP-binding protein LepA; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.5e-23 Score=158.69 Aligned_cols=159 Identities=14% Similarity=0.170 Sum_probs=115.7
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHhcC--CCCC-----c------cccceeEEEeEEEEEe-----cCcEEEEEEEeCCCcc
Q 030504 12 PSFKLVIVGDGGTGKTTFVKRHLTG--EFEK-----K------YEPTIGVEVHPLDFFT-----NCGKIRFYCWDTAGQE 73 (176)
Q Consensus 12 ~~~~i~i~G~~~~GKttl~~~~~~~--~~~~-----~------~~~~~~~~~~~~~~~~-----~~~~~~~~~~D~~g~~ 73 (176)
...|++++|+.++|||||+.+++.. .... . .....|.+........ ++..+.+.+|||||+.
T Consensus 6 ~iRNi~IiGhvd~GKTTL~~rLl~~tg~i~~~~~~~~~lD~~~~ErerGiTi~~~~v~~~~~~~dg~~~~lnLiDTPGh~ 85 (600)
T PRK05433 6 NIRNFSIIAHIDHGKSTLADRLIELTGTLSEREMKAQVLDSMDLERERGITIKAQAVRLNYKAKDGETYILNLIDTPGHV 85 (600)
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHhcCCCcccccccccccCchHHhhcCCcccccEEEEEEEccCCCcEEEEEEECCCcH
Confidence 3468999999999999999998752 2111 0 0122344444333322 4557899999999999
Q ss_pred ccccccccccccccEEEEEEeCCChhhhhhHHHHHHHHhhhcCCCCEEEEEeCCCCCccccCHHHHHHHHHcCC---eEE
Q 030504 74 KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNL---QYY 150 (176)
Q Consensus 74 ~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~~~~~~~~~~~~~~~~~~---~~~ 150 (176)
.+...+..++..+|++++|+|++++...+....|.... . .+.|+++|+||.|+..........++....++ .++
T Consensus 86 dF~~~v~~sl~~aD~aILVVDas~gv~~qt~~~~~~~~-~--~~lpiIvViNKiDl~~a~~~~v~~ei~~~lg~~~~~vi 162 (600)
T PRK05433 86 DFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLAL-E--NDLEIIPVLNKIDLPAADPERVKQEIEDVIGIDASDAV 162 (600)
T ss_pred HHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHH-H--CCCCEEEEEECCCCCcccHHHHHHHHHHHhCCCcceEE
Confidence 99888889999999999999999876666555554332 2 37899999999999754332222334444454 389
Q ss_pred EeccCCCCChHHHHHHHHHHHhc
Q 030504 151 EISAKSNYNFEKPFLYLARKLAG 173 (176)
Q Consensus 151 ~~S~~~~~~v~~~~~~l~~~i~~ 173 (176)
++||++|.|++++++++++.+..
T Consensus 163 ~iSAktG~GI~~Ll~~I~~~lp~ 185 (600)
T PRK05433 163 LVSAKTGIGIEEVLEAIVERIPP 185 (600)
T ss_pred EEecCCCCCHHHHHHHHHHhCcc
Confidence 99999999999999999987753
|
|
| >TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.9e-23 Score=138.23 Aligned_cols=147 Identities=15% Similarity=0.115 Sum_probs=97.8
Q ss_pred CCCCeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccc----------cccc
Q 030504 9 VDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK----------FGGL 78 (176)
Q Consensus 9 ~~~~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~----------~~~~ 78 (176)
++....+|+++|.+|+|||||++++....+...+.++.|.+........+. .+.+|||||... +...
T Consensus 14 ~~~~~~~i~ivG~~~~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~~ 90 (179)
T TIGR03598 14 PPDDGPEIAFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLINFFEVND---GFRLVDLPGYGYAKVSKEEKEKWQKL 90 (179)
T ss_pred CCCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCcceEEEEEEeCC---cEEEEeCCCCccccCChhHHHHHHHH
Confidence 345678999999999999999999887765445555666555444333332 589999999532 1222
Q ss_pred cccccc---cccEEEEEEeCCChhhhhhHHHHHHHHhhhcCCCCEEEEEeCCCCCcccc----CHHHHHHHHHcC--CeE
Q 030504 79 RDGYYI---HGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQV----KAKQVTFHRKKN--LQY 149 (176)
Q Consensus 79 ~~~~~~---~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~~~~~----~~~~~~~~~~~~--~~~ 149 (176)
...+++ .++++++|+|++++.+.... .++..+... +.|+++++||+|+..... ..+..+.+...+ +.+
T Consensus 91 ~~~~l~~~~~~~~ii~vvd~~~~~~~~~~-~~~~~~~~~--~~pviiv~nK~D~~~~~~~~~~~~~i~~~l~~~~~~~~v 167 (179)
T TIGR03598 91 IEEYLEKRENLKGVVLLMDIRHPLKELDL-EMLEWLRER--GIPVLIVLTKADKLKKSELNKQLKKIKKALKKDADDPSV 167 (179)
T ss_pred HHHHHHhChhhcEEEEEecCCCCCCHHHH-HHHHHHHHc--CCCEEEEEECcccCCHHHHHHHHHHHHHHHhhccCCCce
Confidence 223443 35899999999876443333 223333333 789999999999875321 222334444443 589
Q ss_pred EEeccCCCCChH
Q 030504 150 YEISAKSNYNFE 161 (176)
Q Consensus 150 ~~~S~~~~~~v~ 161 (176)
+++||++|+|++
T Consensus 168 ~~~Sa~~g~gi~ 179 (179)
T TIGR03598 168 QLFSSLKKTGID 179 (179)
T ss_pred EEEECCCCCCCC
Confidence 999999999974
|
Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes. |
| >TIGR03594 GTPase_EngA ribosome-associated GTPase EngA | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.3e-23 Score=154.89 Aligned_cols=152 Identities=20% Similarity=0.157 Sum_probs=107.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCcc--------ccccccccccccc
Q 030504 15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE--------KFGGLRDGYYIHG 86 (176)
Q Consensus 15 ~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~--------~~~~~~~~~~~~~ 86 (176)
+|+++|.+|||||||+|++...+. .......|.+...........+..+.+|||||.. .+......+++.+
T Consensus 1 ~i~ivG~~nvGKStL~n~l~~~~~-~~v~~~~g~t~d~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~a 79 (429)
T TIGR03594 1 VVAIVGRPNVGKSTLFNRLTGKRD-AIVSDTPGVTRDRKYGDAEWGGREFILIDTGGIEEDDDGLDKQIREQAEIAIEEA 79 (429)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCc-ceecCCCCcccCceEEEEEECCeEEEEEECCCCCCcchhHHHHHHHHHHHHHhhC
Confidence 589999999999999999876653 2223344555555544444455579999999963 2333455567889
Q ss_pred cEEEEEEeCCChhhhhhHHHHHHHHhhhcCCCCEEEEEeCCCCCccccCHHHHHHHHHcCC-eEEEeccCCCCChHHHHH
Q 030504 87 QCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNL-QYYEISAKSNYNFEKPFL 165 (176)
Q Consensus 87 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~S~~~~~~v~~~~~ 165 (176)
|++++|+|+.++.+.... .+...+.+. ++|+++|+||+|+...... ..+ +...++ .++++||++|.|++++++
T Consensus 80 d~vl~vvD~~~~~~~~d~-~i~~~l~~~--~~piilVvNK~D~~~~~~~--~~~-~~~lg~~~~~~vSa~~g~gv~~ll~ 153 (429)
T TIGR03594 80 DVILFVVDGREGLTPEDE-EIAKWLRKS--GKPVILVANKIDGKKEDAV--AAE-FYSLGFGEPIPISAEHGRGIGDLLD 153 (429)
T ss_pred CEEEEEEeCCCCCCHHHH-HHHHHHHHh--CCCEEEEEECccCCccccc--HHH-HHhcCCCCeEEEeCCcCCChHHHHH
Confidence 999999999875433221 222233332 8899999999998754322 122 345566 799999999999999999
Q ss_pred HHHHHHhc
Q 030504 166 YLARKLAG 173 (176)
Q Consensus 166 ~l~~~i~~ 173 (176)
++.+.+.+
T Consensus 154 ~i~~~l~~ 161 (429)
T TIGR03594 154 AILELLPE 161 (429)
T ss_pred HHHHhcCc
Confidence 99988754
|
EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability. |
| >TIGR00475 selB selenocysteine-specific elongation factor SelB | Back alignment and domain information |
|---|
Probab=99.91 E-value=5.6e-23 Score=156.50 Aligned_cols=155 Identities=17% Similarity=0.113 Sum_probs=109.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc---CCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccccccccccEEE
Q 030504 14 FKLVIVGDGGTGKTTFVKRHLT---GEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (176)
Q Consensus 14 ~~i~i~G~~~~GKttl~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 90 (176)
+.|+++|+.++|||||++++.+ ..+..++.++.+.+.....+..+ ...+.+||+||++.|.......+.++|+++
T Consensus 1 ~~I~iiG~~d~GKTTLi~aLtg~~~d~~~eE~~rGiTid~~~~~~~~~--~~~v~~iDtPGhe~f~~~~~~g~~~aD~aI 78 (581)
T TIGR00475 1 MIIATAGHVDHGKTTLLKALTGIAADRLPEEKKRGMTIDLGFAYFPLP--DYRLGFIDVPGHEKFISNAIAGGGGIDAAL 78 (581)
T ss_pred CEEEEECCCCCCHHHHHHHHhCccCcCChhHhcCCceEEeEEEEEEeC--CEEEEEEECCCHHHHHHHHHhhhccCCEEE
Confidence 4799999999999999999774 23333334444334333333333 378999999999999888888889999999
Q ss_pred EEEeCCChhhhhhHHHHHHHHhhhcCCCC-EEEEEeCCCCCcccc----CHHHHHHHHHc----CCeEEEeccCCCCChH
Q 030504 91 IMFDVTARLTYKNVPTWHRDLCRVCENIP-IVLCGNKVDVKNRQV----KAKQVTFHRKK----NLQYYEISAKSNYNFE 161 (176)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~p-~liv~nK~Dl~~~~~----~~~~~~~~~~~----~~~~~~~S~~~~~~v~ 161 (176)
+|+|++++...+...+ +..+.. .+.| +++++||+|+.+... ..+..+++... +++++++|+++|+|++
T Consensus 79 LVVDa~~G~~~qT~eh-l~il~~--lgi~~iIVVlNK~Dlv~~~~~~~~~~ei~~~l~~~~~~~~~~ii~vSA~tG~GI~ 155 (581)
T TIGR00475 79 LVVDADEGVMTQTGEH-LAVLDL--LGIPHTIVVITKADRVNEEEIKRTEMFMKQILNSYIFLKNAKIFKTSAKTGQGIG 155 (581)
T ss_pred EEEECCCCCcHHHHHH-HHHHHH--cCCCeEEEEEECCCCCCHHHHHHHHHHHHHHHHHhCCCCCCcEEEEeCCCCCCch
Confidence 9999998432222222 222222 2677 999999999976432 22233444443 5789999999999999
Q ss_pred HHHHHHHHHHhc
Q 030504 162 KPFLYLARKLAG 173 (176)
Q Consensus 162 ~~~~~l~~~i~~ 173 (176)
+++.++...+..
T Consensus 156 eL~~~L~~l~~~ 167 (581)
T TIGR00475 156 ELKKELKNLLES 167 (581)
T ss_pred hHHHHHHHHHHh
Confidence 999998776543
|
In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes. |
| >CHL00189 infB translation initiation factor 2; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.8e-23 Score=159.97 Aligned_cols=159 Identities=19% Similarity=0.195 Sum_probs=111.2
Q ss_pred CCCeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeE--EEeEEEEEecCcEEEEEEEeCCCcccccccccccccccc
Q 030504 10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGV--EVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQ 87 (176)
Q Consensus 10 ~~~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~ 87 (176)
..+..+|+++|+.++|||||++++....+.....+.... ..........+....+.+|||||++.|..++..++..+|
T Consensus 241 ~~r~p~V~IvGhvdvGKTSLld~L~~~~~~~~e~~GiTq~i~~~~v~~~~~~~~~kItfiDTPGhe~F~~mr~rg~~~aD 320 (742)
T CHL00189 241 INRPPIVTILGHVDHGKTTLLDKIRKTQIAQKEAGGITQKIGAYEVEFEYKDENQKIVFLDTPGHEAFSSMRSRGANVTD 320 (742)
T ss_pred cccCCEEEEECCCCCCHHHHHHHHHhccCccccCCccccccceEEEEEEecCCceEEEEEECCcHHHHHHHHHHHHHHCC
Confidence 346679999999999999999998876654332222211 112222223345688999999999999999988999999
Q ss_pred EEEEEEeCCChhhhhhHHHHHHHHhhhcCCCCEEEEEeCCCCCccccCHHHHHH------HHHcC--CeEEEeccCCCCC
Q 030504 88 CAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTF------HRKKN--LQYYEISAKSNYN 159 (176)
Q Consensus 88 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~~~~~~~~~~~~------~~~~~--~~~~~~S~~~~~~ 159 (176)
++++|+|++++...+....+ ..+.. .+.|+++++||+|+.......-...+ ....+ ++++++||++|.|
T Consensus 321 iaILVVDA~dGv~~QT~E~I-~~~k~--~~iPiIVViNKiDl~~~~~e~v~~eL~~~~ll~e~~g~~vpvv~VSAktG~G 397 (742)
T CHL00189 321 IAILIIAADDGVKPQTIEAI-NYIQA--ANVPIIVAINKIDKANANTERIKQQLAKYNLIPEKWGGDTPMIPISASQGTN 397 (742)
T ss_pred EEEEEEECcCCCChhhHHHH-HHHHh--cCceEEEEEECCCccccCHHHHHHHHHHhccchHhhCCCceEEEEECCCCCC
Confidence 99999999886443333322 22222 37899999999999764321111111 12222 6899999999999
Q ss_pred hHHHHHHHHHHH
Q 030504 160 FEKPFLYLARKL 171 (176)
Q Consensus 160 v~~~~~~l~~~i 171 (176)
++++++++....
T Consensus 398 IdeLle~I~~l~ 409 (742)
T CHL00189 398 IDKLLETILLLA 409 (742)
T ss_pred HHHHHHhhhhhh
Confidence 999999998753
|
|
| >PRK05306 infB translation initiation factor IF-2; Validated | Back alignment and domain information |
|---|
Probab=99.91 E-value=1e-22 Score=158.09 Aligned_cols=157 Identities=13% Similarity=0.150 Sum_probs=110.9
Q ss_pred CCCCeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccccccccccE
Q 030504 9 VDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQC 88 (176)
Q Consensus 9 ~~~~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~ 88 (176)
...+..+|+++|+.++|||||++++..+.+.....+ |++.......+...+..+.+|||||++.|..++...+..+|+
T Consensus 286 ~~~R~pvV~ImGhvd~GKTSLl~~Lr~~~v~~~e~~--GIT~~iga~~v~~~~~~ItfiDTPGhe~F~~m~~rga~~aDi 363 (787)
T PRK05306 286 LVPRPPVVTIMGHVDHGKTSLLDAIRKTNVAAGEAG--GITQHIGAYQVETNGGKITFLDTPGHEAFTAMRARGAQVTDI 363 (787)
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHHhCCccccccC--ceeeeccEEEEEECCEEEEEEECCCCccchhHHHhhhhhCCE
Confidence 346778899999999999999999887766543322 333333323333334678999999999999988888899999
Q ss_pred EEEEEeCCChhhhhhHHHHHHHHhhhcCCCCEEEEEeCCCCCccccCH---HHH---HHHHHcC--CeEEEeccCCCCCh
Q 030504 89 AIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKA---KQV---TFHRKKN--LQYYEISAKSNYNF 160 (176)
Q Consensus 89 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~~~~~~~---~~~---~~~~~~~--~~~~~~S~~~~~~v 160 (176)
+|+|||+++...-+....| ..... .+.|+++++||+|+....... +.. .+....+ ++++++||++|.|+
T Consensus 364 aILVVdAddGv~~qT~e~i-~~a~~--~~vPiIVviNKiDl~~a~~e~V~~eL~~~~~~~e~~g~~vp~vpvSAktG~GI 440 (787)
T PRK05306 364 VVLVVAADDGVMPQTIEAI-NHAKA--AGVPIIVAINKIDKPGANPDRVKQELSEYGLVPEEWGGDTIFVPVSAKTGEGI 440 (787)
T ss_pred EEEEEECCCCCCHhHHHHH-HHHHh--cCCcEEEEEECccccccCHHHHHHHHHHhcccHHHhCCCceEEEEeCCCCCCc
Confidence 9999999885433333322 22222 389999999999996532211 111 1122222 78999999999999
Q ss_pred HHHHHHHHHH
Q 030504 161 EKPFLYLARK 170 (176)
Q Consensus 161 ~~~~~~l~~~ 170 (176)
+++|++|...
T Consensus 441 ~eLle~I~~~ 450 (787)
T PRK05306 441 DELLEAILLQ 450 (787)
T ss_pred hHHHHhhhhh
Confidence 9999998753
|
|
| >PRK12296 obgE GTPase CgtA; Reviewed | Back alignment and domain information |
|---|
Probab=99.91 E-value=5.8e-23 Score=152.08 Aligned_cols=158 Identities=16% Similarity=0.094 Sum_probs=104.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccc----c---ccccccccc
Q 030504 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFG----G---LRDGYYIHG 86 (176)
Q Consensus 14 ~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~----~---~~~~~~~~~ 86 (176)
..|+|+|.|+||||||++++...+.. .....++|.......+......|.+||+||.-... . .....+.++
T Consensus 160 adV~LVG~PNAGKSTLln~Ls~akpk--IadypfTTl~P~lGvv~~~~~~f~laDtPGliegas~g~gLg~~fLrhiera 237 (500)
T PRK12296 160 ADVGLVGFPSAGKSSLISALSAAKPK--IADYPFTTLVPNLGVVQAGDTRFTVADVPGLIPGASEGKGLGLDFLRHIERC 237 (500)
T ss_pred ceEEEEEcCCCCHHHHHHHHhcCCcc--ccccCcccccceEEEEEECCeEEEEEECCCCccccchhhHHHHHHHHHHHhc
Confidence 46999999999999999998765432 12222333333333333344679999999963211 1 122245779
Q ss_pred cEEEEEEeCCCh----hhhhhHHHHHHHHhh------------hcCCCCEEEEEeCCCCCccccCH-HHHHHHHHcCCeE
Q 030504 87 QCAIIMFDVTAR----LTYKNVPTWHRDLCR------------VCENIPIVLCGNKVDVKNRQVKA-KQVTFHRKKNLQY 149 (176)
Q Consensus 87 ~~~i~v~d~~~~----~s~~~~~~~~~~~~~------------~~~~~p~liv~nK~Dl~~~~~~~-~~~~~~~~~~~~~ 149 (176)
+++++|+|+++. ..++....+...+.. ...++|.++|+||+|+.+..... .....+...++++
T Consensus 238 dvLv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~l~~~~~~~~l~~kP~IVVlNKiDL~da~el~e~l~~~l~~~g~~V 317 (500)
T PRK12296 238 AVLVHVVDCATLEPGRDPLSDIDALEAELAAYAPALDGDLGLGDLAERPRLVVLNKIDVPDARELAEFVRPELEARGWPV 317 (500)
T ss_pred CEEEEEECCcccccccCchhhHHHHHHHHHHhhhcccccchhhhhcCCCEEEEEECccchhhHHHHHHHHHHHHHcCCeE
Confidence 999999999853 233333333333322 22478999999999997533222 2223444568899
Q ss_pred EEeccCCCCChHHHHHHHHHHHhc
Q 030504 150 YEISAKSNYNFEKPFLYLARKLAG 173 (176)
Q Consensus 150 ~~~S~~~~~~v~~~~~~l~~~i~~ 173 (176)
+++||++++|+++++.+|.+.+.+
T Consensus 318 f~ISA~tgeGLdEL~~~L~ell~~ 341 (500)
T PRK12296 318 FEVSAASREGLRELSFALAELVEE 341 (500)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHh
Confidence 999999999999999999987754
|
|
| >PRK00089 era GTPase Era; Reviewed | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.3e-22 Score=143.77 Aligned_cols=159 Identities=16% Similarity=0.134 Sum_probs=104.9
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCcccccc--------cccccc
Q 030504 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGG--------LRDGYY 83 (176)
Q Consensus 12 ~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~--------~~~~~~ 83 (176)
+.-.|+++|.+|||||||+|++++..... ..+...++..............+.++||||...... .....+
T Consensus 4 ~~g~V~iiG~pn~GKSTLin~L~g~~~~~-vs~~~~tt~~~i~~i~~~~~~qi~~iDTPG~~~~~~~l~~~~~~~~~~~~ 82 (292)
T PRK00089 4 KSGFVAIVGRPNVGKSTLLNALVGQKISI-VSPKPQTTRHRIRGIVTEDDAQIIFVDTPGIHKPKRALNRAMNKAAWSSL 82 (292)
T ss_pred eeEEEEEECCCCCCHHHHHHHHhCCceee-cCCCCCcccccEEEEEEcCCceEEEEECCCCCCchhHHHHHHHHHHHHHH
Confidence 45679999999999999999977655422 222223333333322222346899999999754321 223356
Q ss_pred ccccEEEEEEeCCChhhhhhHHH-HHHHHhhhcCCCCEEEEEeCCCCCc-cccCHH-HHHHHHHc-CCeEEEeccCCCCC
Q 030504 84 IHGQCAIIMFDVTARLTYKNVPT-WHRDLCRVCENIPIVLCGNKVDVKN-RQVKAK-QVTFHRKK-NLQYYEISAKSNYN 159 (176)
Q Consensus 84 ~~~~~~i~v~d~~~~~s~~~~~~-~~~~~~~~~~~~p~liv~nK~Dl~~-~~~~~~-~~~~~~~~-~~~~~~~S~~~~~~ 159 (176)
..+|++++|+|+++.. ..... ....+.. .+.|+++|+||+|+.. ...... ...+.... ...++++||+++.|
T Consensus 83 ~~~D~il~vvd~~~~~--~~~~~~i~~~l~~--~~~pvilVlNKiDl~~~~~~l~~~~~~l~~~~~~~~i~~iSA~~~~g 158 (292)
T PRK00089 83 KDVDLVLFVVDADEKI--GPGDEFILEKLKK--VKTPVILVLNKIDLVKDKEELLPLLEELSELMDFAEIVPISALKGDN 158 (292)
T ss_pred hcCCEEEEEEeCCCCC--ChhHHHHHHHHhh--cCCCEEEEEECCcCCCCHHHHHHHHHHHHhhCCCCeEEEecCCCCCC
Confidence 7899999999998832 22222 2222222 3789999999999973 222222 22333333 36899999999999
Q ss_pred hHHHHHHHHHHHhcCC
Q 030504 160 FEKPFLYLARKLAGST 175 (176)
Q Consensus 160 v~~~~~~l~~~i~~~~ 175 (176)
++++++++.+.+.+.+
T Consensus 159 v~~L~~~L~~~l~~~~ 174 (292)
T PRK00089 159 VDELLDVIAKYLPEGP 174 (292)
T ss_pred HHHHHHHHHHhCCCCC
Confidence 9999999999886554
|
|
| >PRK11058 GTPase HflX; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.1e-22 Score=149.45 Aligned_cols=156 Identities=17% Similarity=0.115 Sum_probs=102.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCcccc--cccccc------cccc
Q 030504 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKF--GGLRDG------YYIH 85 (176)
Q Consensus 14 ~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~--~~~~~~------~~~~ 85 (176)
.+|+++|.+|||||||+|++.+........+....+.........+. ..+.+|||+|..+. ...+.. .+..
T Consensus 198 p~ValVG~~NaGKSSLlN~Lt~~~~~v~~~~~tTld~~~~~i~l~~~-~~~~l~DTaG~~r~lp~~lve~f~~tl~~~~~ 276 (426)
T PRK11058 198 PTVSLVGYTNAGKSTLFNRITEARVYAADQLFATLDPTLRRIDVADV-GETVLADTVGFIRHLPHDLVAAFKATLQETRQ 276 (426)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCceeeccCCCCCcCCceEEEEeCCC-CeEEEEecCcccccCCHHHHHHHHHHHHHhhc
Confidence 57999999999999999998765432211112112222222333322 25789999997432 222222 3578
Q ss_pred ccEEEEEEeCCChhhhhhHHHHHHHHhhhc-CCCCEEEEEeCCCCCccccCHHHHHHHHHcCCe-EEEeccCCCCChHHH
Q 030504 86 GQCAIIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQ-YYEISAKSNYNFEKP 163 (176)
Q Consensus 86 ~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~liv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~S~~~~~~v~~~ 163 (176)
+|++++|+|++++.+++.+..|...+.... .+.|+++|+||+|+...... . ... ...+.+ ++.+||++|.|++++
T Consensus 277 ADlIL~VvDaS~~~~~e~l~~v~~iL~el~~~~~pvIiV~NKiDL~~~~~~-~-~~~-~~~~~~~~v~ISAktG~GIdeL 353 (426)
T PRK11058 277 ATLLLHVVDAADVRVQENIEAVNTVLEEIDAHEIPTLLVMNKIDMLDDFEP-R-IDR-DEENKPIRVWLSAQTGAGIPLL 353 (426)
T ss_pred CCEEEEEEeCCCccHHHHHHHHHHHHHHhccCCCCEEEEEEcccCCCchhH-H-HHH-HhcCCCceEEEeCCCCCCHHHH
Confidence 999999999999887777654444443332 47899999999999643211 1 111 123444 588999999999999
Q ss_pred HHHHHHHHhc
Q 030504 164 FLYLARKLAG 173 (176)
Q Consensus 164 ~~~l~~~i~~ 173 (176)
++++.+.+..
T Consensus 354 ~e~I~~~l~~ 363 (426)
T PRK11058 354 FQALTERLSG 363 (426)
T ss_pred HHHHHHHhhh
Confidence 9999988753
|
|
| >PRK00093 GTP-binding protein Der; Reviewed | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.8e-22 Score=149.33 Aligned_cols=158 Identities=16% Similarity=0.162 Sum_probs=107.8
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccc-----------c
Q 030504 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGL-----------R 79 (176)
Q Consensus 11 ~~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~-----------~ 79 (176)
...++|+++|.+++|||||+++++..... ...+..|++...........+..+.+|||||....... .
T Consensus 171 ~~~~~v~ivG~~n~GKStlin~ll~~~~~-~~~~~~gtt~~~~~~~~~~~~~~~~lvDT~G~~~~~~~~~~~e~~~~~~~ 249 (435)
T PRK00093 171 DEPIKIAIIGRPNVGKSSLINALLGEERV-IVSDIAGTTRDSIDTPFERDGQKYTLIDTAGIRRKGKVTEGVEKYSVIRT 249 (435)
T ss_pred ccceEEEEECCCCCCHHHHHHHHhCCCce-eecCCCCceEEEEEEEEEECCeeEEEEECCCCCCCcchhhHHHHHHHHHH
Confidence 35799999999999999999997754321 12334455555554444344566789999996543221 1
Q ss_pred ccccccccEEEEEEeCCChhhhhhHHHHHHHHhhhcCCCCEEEEEeCCCCCccccCHHHHH-HHH----HcCCeEEEecc
Q 030504 80 DGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVT-FHR----KKNLQYYEISA 154 (176)
Q Consensus 80 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~~~~~~~~~~~-~~~----~~~~~~~~~S~ 154 (176)
..++..+|++++|+|++++.+.+... +...+.+. +.|+++++||+|+.+.....+..+ +.. ...++++++||
T Consensus 250 ~~~~~~ad~~ilViD~~~~~~~~~~~-i~~~~~~~--~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~l~~~~~~~i~~~SA 326 (435)
T PRK00093 250 LKAIERADVVLLVIDATEGITEQDLR-IAGLALEA--GRALVIVVNKWDLVDEKTMEEFKKELRRRLPFLDYAPIVFISA 326 (435)
T ss_pred HHHHHHCCEEEEEEeCCCCCCHHHHH-HHHHHHHc--CCcEEEEEECccCCCHHHHHHHHHHHHHhcccccCCCEEEEeC
Confidence 23567899999999999886655442 23333333 799999999999974322222211 111 13578999999
Q ss_pred CCCCChHHHHHHHHHHHh
Q 030504 155 KSNYNFEKPFLYLARKLA 172 (176)
Q Consensus 155 ~~~~~v~~~~~~l~~~i~ 172 (176)
+++.|++++++++.+...
T Consensus 327 ~~~~gv~~l~~~i~~~~~ 344 (435)
T PRK00093 327 LTGQGVDKLLEAIDEAYE 344 (435)
T ss_pred CCCCCHHHHHHHHHHHHH
Confidence 999999999999887553
|
|
| >PRK09554 feoB ferrous iron transport protein B; Reviewed | Back alignment and domain information |
|---|
Probab=99.90 E-value=3.2e-22 Score=155.92 Aligned_cols=153 Identities=14% Similarity=0.140 Sum_probs=116.7
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccc----------ccc
Q 030504 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGL----------RDG 81 (176)
Q Consensus 12 ~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~----------~~~ 81 (176)
+.++|+++|.+|||||||.|++.+.+. ......|.+..............+.++||||...+... ...
T Consensus 2 ~~~~IaLvG~pNvGKSTLfN~Ltg~~~--~vgn~pGvTve~k~g~~~~~~~~i~lvDtPG~ysl~~~~~~~s~~E~i~~~ 79 (772)
T PRK09554 2 KKLTIGLIGNPNSGKTTLFNQLTGARQ--RVGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIACH 79 (772)
T ss_pred CceEEEEECCCCCCHHHHHHHHhCCCC--ccCCCCCceEeeEEEEEEcCceEEEEEECCCccccccccccccHHHHHHHH
Confidence 457999999999999999999875544 23445677777777667777788999999998765432 112
Q ss_pred cc--ccccEEEEEEeCCChhhhhhHHHHHHHHhhhcCCCCEEEEEeCCCCCc-cccCHHHHHHHHHcCCeEEEeccCCCC
Q 030504 82 YY--IHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKN-RQVKAKQVTFHRKKNLQYYEISAKSNY 158 (176)
Q Consensus 82 ~~--~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~S~~~~~ 158 (176)
++ ..+|++++|+|+++.+.. ..+..++.+. +.|+++++||.|+.+ +....+..++.+..+++++++|+++++
T Consensus 80 ~l~~~~aD~vI~VvDat~ler~---l~l~~ql~e~--giPvIvVlNK~Dl~~~~~i~id~~~L~~~LG~pVvpiSA~~g~ 154 (772)
T PRK09554 80 YILSGDADLLINVVDASNLERN---LYLTLQLLEL--GIPCIVALNMLDIAEKQNIRIDIDALSARLGCPVIPLVSTRGR 154 (772)
T ss_pred HHhccCCCEEEEEecCCcchhh---HHHHHHHHHc--CCCEEEEEEchhhhhccCcHHHHHHHHHHhCCCEEEEEeecCC
Confidence 22 478999999999886432 2344444444 899999999999874 444455667788899999999999999
Q ss_pred ChHHHHHHHHHHH
Q 030504 159 NFEKPFLYLARKL 171 (176)
Q Consensus 159 ~v~~~~~~l~~~i 171 (176)
|++++.+.+.+..
T Consensus 155 GIdeL~~~I~~~~ 167 (772)
T PRK09554 155 GIEALKLAIDRHQ 167 (772)
T ss_pred CHHHHHHHHHHhh
Confidence 9999999987754
|
|
| >PRK00093 GTP-binding protein Der; Reviewed | Back alignment and domain information |
|---|
Probab=99.90 E-value=9.1e-23 Score=151.91 Aligned_cols=148 Identities=22% Similarity=0.184 Sum_probs=101.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccc--------ccccccccccc
Q 030504 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK--------FGGLRDGYYIH 85 (176)
Q Consensus 14 ~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~--------~~~~~~~~~~~ 85 (176)
.+|+++|.+|||||||+|++...+.. ......|.+...........+..+.+|||||++. .......++..
T Consensus 2 ~~I~ivG~~~vGKStL~n~l~~~~~~-~v~~~~~~t~d~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~ 80 (435)
T PRK00093 2 PVVAIVGRPNVGKSTLFNRLTGKRDA-IVADTPGVTRDRIYGEAEWLGREFILIDTGGIEPDDDGFEKQIREQAELAIEE 80 (435)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCce-eeCCCCCCcccceEEEEEECCcEEEEEECCCCCCcchhHHHHHHHHHHHHHHh
Confidence 48999999999999999998766532 1122334444333333332347899999999886 12223456788
Q ss_pred ccEEEEEEeCCChhhhh--hHHHHHHHHhhhcCCCCEEEEEeCCCCCccccCHHHHHHHHHcCC-eEEEeccCCCCChHH
Q 030504 86 GQCAIIMFDVTARLTYK--NVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNL-QYYEISAKSNYNFEK 162 (176)
Q Consensus 86 ~~~~i~v~d~~~~~s~~--~~~~~~~~~~~~~~~~p~liv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~S~~~~~~v~~ 162 (176)
+|++++|+|++++.+.. .+..|+. .. +.|+++|+||+|+.... ....+ +...++ .++++||++|.|+++
T Consensus 81 ad~il~vvd~~~~~~~~~~~~~~~l~---~~--~~piilv~NK~D~~~~~--~~~~~-~~~lg~~~~~~iSa~~g~gv~~ 152 (435)
T PRK00093 81 ADVILFVVDGRAGLTPADEEIAKILR---KS--NKPVILVVNKVDGPDEE--ADAYE-FYSLGLGEPYPISAEHGRGIGD 152 (435)
T ss_pred CCEEEEEEECCCCCCHHHHHHHHHHH---Hc--CCcEEEEEECccCccch--hhHHH-HHhcCCCCCEEEEeeCCCCHHH
Confidence 99999999998754332 2233332 22 88999999999975421 12222 234565 489999999999999
Q ss_pred HHHHHHHH
Q 030504 163 PFLYLARK 170 (176)
Q Consensus 163 ~~~~l~~~ 170 (176)
+++++++.
T Consensus 153 l~~~I~~~ 160 (435)
T PRK00093 153 LLDAILEE 160 (435)
T ss_pred HHHHHHhh
Confidence 99999874
|
|
| >COG2229 Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.90 E-value=3.6e-22 Score=127.18 Aligned_cols=159 Identities=21% Similarity=0.226 Sum_probs=123.1
Q ss_pred CCCCCCeeEEEEEcCCCCcHHHHHHHHhcCCCC--------Ccc----ccceeEEEeEEEEEecCcEEEEEEEeCCCccc
Q 030504 7 QTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFE--------KKY----EPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK 74 (176)
Q Consensus 7 ~~~~~~~~~i~i~G~~~~GKttl~~~~~~~~~~--------~~~----~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~ 74 (176)
........||+++|+.++||||+++++...... ..+ ..|.+.++..... . ....+.+++||||++
T Consensus 4 ~~~k~~~~KIvv~G~~~agKtTfv~~~s~k~~v~t~~~~~~~s~k~kr~tTva~D~g~~~~--~-~~~~v~LfgtPGq~R 80 (187)
T COG2229 4 AANKMIETKIVVIGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMDFGSIEL--D-EDTGVHLFGTPGQER 80 (187)
T ss_pred ccccccceeEEEEcccccchhhHHHHhhccccceeeccccccccccccceeEeecccceEE--c-CcceEEEecCCCcHH
Confidence 345567899999999999999999997654421 111 1233333333332 2 235688999999999
Q ss_pred cccccccccccccEEEEEEeCCChhhhhhHHHHHHHHhhhcCCCCEEEEEeCCCCCccccCHHHHHHHHHc--CCeEEEe
Q 030504 75 FGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKK--NLQYYEI 152 (176)
Q Consensus 75 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~~~~~~~~~~~~~~~~--~~~~~~~ 152 (176)
+..+|..+.+++.++|+++|.+++..+ .....+..+.... ..|+++..||.||.+....++..++.... ..+.++.
T Consensus 81 F~fm~~~l~~ga~gaivlVDss~~~~~-~a~~ii~f~~~~~-~ip~vVa~NK~DL~~a~ppe~i~e~l~~~~~~~~vi~~ 158 (187)
T COG2229 81 FKFMWEILSRGAVGAIVLVDSSRPITF-HAEEIIDFLTSRN-PIPVVVAINKQDLFDALPPEKIREALKLELLSVPVIEI 158 (187)
T ss_pred HHHHHHHHhCCcceEEEEEecCCCcch-HHHHHHHHHhhcc-CCCEEEEeeccccCCCCCHHHHHHHHHhccCCCceeee
Confidence 999999999999999999999999877 4445555554442 29999999999999998888887776665 8899999
Q ss_pred ccCCCCChHHHHHHHHHH
Q 030504 153 SAKSNYNFEKPFLYLARK 170 (176)
Q Consensus 153 S~~~~~~v~~~~~~l~~~ 170 (176)
++..+++..+.+..+...
T Consensus 159 ~a~e~~~~~~~L~~ll~~ 176 (187)
T COG2229 159 DATEGEGARDQLDVLLLK 176 (187)
T ss_pred ecccchhHHHHHHHHHhh
Confidence 999999999999888765
|
|
| >TIGR00437 feoB ferrous iron transporter FeoB | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.8e-22 Score=153.86 Aligned_cols=145 Identities=14% Similarity=0.111 Sum_probs=103.9
Q ss_pred cCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccc------ccccc--ccccEEEE
Q 030504 20 GDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGL------RDGYY--IHGQCAII 91 (176)
Q Consensus 20 G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~------~~~~~--~~~~~~i~ 91 (176)
|.+|+|||||+|++.+.+..... ..|.+...........+..+.+|||||+..+... .+.++ ..+|++++
T Consensus 1 G~pNvGKSSL~N~Ltg~~~~v~n--~pG~Tv~~~~~~i~~~~~~i~lvDtPG~~~~~~~s~~e~v~~~~l~~~~aDvvI~ 78 (591)
T TIGR00437 1 GNPNVGKSTLFNALTGANQTVGN--WPGVTVEKKEGKLGFQGEDIEIVDLPGIYSLTTFSLEEEVARDYLLNEKPDLVVN 78 (591)
T ss_pred CCCCCCHHHHHHHHhCCCCeecC--CCCeEEEEEEEEEEECCeEEEEEECCCccccCccchHHHHHHHHHhhcCCCEEEE
Confidence 88999999999998776653333 3344444443333333456899999998876543 23333 36899999
Q ss_pred EEeCCChhhhhhHHHHHHHHhhhcCCCCEEEEEeCCCCCcc-ccCHHHHHHHHHcCCeEEEeccCCCCChHHHHHHHHHH
Q 030504 92 MFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNR-QVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARK 170 (176)
Q Consensus 92 v~d~~~~~s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~~~-~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l~~~ 170 (176)
|+|+++.+. ...+..++.+ .+.|+++++||+|+.++ ....+...+.+..+++++++||++|+|++++++++.+.
T Consensus 79 VvDat~ler---~l~l~~ql~~--~~~PiIIVlNK~Dl~~~~~i~~d~~~L~~~lg~pvv~tSA~tg~Gi~eL~~~i~~~ 153 (591)
T TIGR00437 79 VVDASNLER---NLYLTLQLLE--LGIPMILALNLVDEAEKKGIRIDEEKLEERLGVPVVPTSATEGRGIERLKDAIRKA 153 (591)
T ss_pred EecCCcchh---hHHHHHHHHh--cCCCEEEEEehhHHHHhCCChhhHHHHHHHcCCCEEEEECCCCCCHHHHHHHHHHH
Confidence 999987532 2233333333 38999999999999653 33445667788889999999999999999999999875
Q ss_pred H
Q 030504 171 L 171 (176)
Q Consensus 171 i 171 (176)
.
T Consensus 154 ~ 154 (591)
T TIGR00437 154 I 154 (591)
T ss_pred h
Confidence 4
|
FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum. |
| >PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed | Back alignment and domain information |
|---|
Probab=99.90 E-value=3.6e-22 Score=155.82 Aligned_cols=154 Identities=25% Similarity=0.211 Sum_probs=107.5
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCcccc--------cccccccc
Q 030504 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKF--------GGLRDGYY 83 (176)
Q Consensus 12 ~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~--------~~~~~~~~ 83 (176)
...+|+++|.++||||||+|++++++. .....+.|++...........+..+.+|||||.+.. ......++
T Consensus 274 ~~~~V~IvG~~nvGKSSL~n~l~~~~~-~iv~~~pGvT~d~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~ 352 (712)
T PRK09518 274 AVGVVAIVGRPNVGKSTLVNRILGRRE-AVVEDTPGVTRDRVSYDAEWAGTDFKLVDTGGWEADVEGIDSAIASQAQIAV 352 (712)
T ss_pred cCcEEEEECCCCCCHHHHHHHHhCCCc-eeecCCCCeeEEEEEEEEEECCEEEEEEeCCCcCCCCccHHHHHHHHHHHHH
Confidence 456899999999999999999876543 223445566666665555445567899999997632 22334457
Q ss_pred ccccEEEEEEeCCChhhhhhHH-HHHHHHhhhcCCCCEEEEEeCCCCCccccCHHHHHHHHHcCC-eEEEeccCCCCChH
Q 030504 84 IHGQCAIIMFDVTARLTYKNVP-TWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNL-QYYEISAKSNYNFE 161 (176)
Q Consensus 84 ~~~~~~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~p~liv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~S~~~~~~v~ 161 (176)
..+|++++|+|+++... ... .|...+.. .+.|+++|+||+|+..... ....+. ..+. ..+++||++|.|++
T Consensus 353 ~~aD~iL~VvDa~~~~~--~~d~~i~~~Lr~--~~~pvIlV~NK~D~~~~~~--~~~~~~-~lg~~~~~~iSA~~g~GI~ 425 (712)
T PRK09518 353 SLADAVVFVVDGQVGLT--STDERIVRMLRR--AGKPVVLAVNKIDDQASEY--DAAEFW-KLGLGEPYPISAMHGRGVG 425 (712)
T ss_pred HhCCEEEEEEECCCCCC--HHHHHHHHHHHh--cCCCEEEEEECcccccchh--hHHHHH-HcCCCCeEEEECCCCCCch
Confidence 88999999999986432 222 34444443 4899999999999864321 122222 2232 46799999999999
Q ss_pred HHHHHHHHHHhc
Q 030504 162 KPFLYLARKLAG 173 (176)
Q Consensus 162 ~~~~~l~~~i~~ 173 (176)
++|+++++.+.+
T Consensus 426 eLl~~i~~~l~~ 437 (712)
T PRK09518 426 DLLDEALDSLKV 437 (712)
T ss_pred HHHHHHHHhccc
Confidence 999999988754
|
|
| >PRK12317 elongation factor 1-alpha; Reviewed | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.6e-22 Score=148.80 Aligned_cols=155 Identities=21% Similarity=0.193 Sum_probs=105.1
Q ss_pred CCCeeEEEEEcCCCCcHHHHHHHHhc--CCCCC---------------------------ccccceeEEEeEEEEEecCc
Q 030504 10 DYPSFKLVIVGDGGTGKTTFVKRHLT--GEFEK---------------------------KYEPTIGVEVHPLDFFTNCG 60 (176)
Q Consensus 10 ~~~~~~i~i~G~~~~GKttl~~~~~~--~~~~~---------------------------~~~~~~~~~~~~~~~~~~~~ 60 (176)
+.+.++|+++|++++|||||+++++. |.... ......|++.......++..
T Consensus 3 ~k~~~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~~~~~~ 82 (425)
T PRK12317 3 EKPHLNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHKKFETD 82 (425)
T ss_pred CCCEEEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeEEEecC
Confidence 46789999999999999999999873 21110 00113566777776677777
Q ss_pred EEEEEEEeCCCccccccccccccccccEEEEEEeCCChhhhhhHHHHHHHHhhhcCCCCEEEEEeCCCCCcccc------
Q 030504 61 KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQV------ 134 (176)
Q Consensus 61 ~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~~~~~------ 134 (176)
.+.+.+|||||++.+.......+..+|++++|+|+++..++.....+...+.......|+++++||.|+.+...
T Consensus 83 ~~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~~~~~~~~~~~~~~~iivviNK~Dl~~~~~~~~~~~ 162 (425)
T PRK12317 83 KYYFTIVDCPGHRDFVKNMITGASQADAAVLVVAADDAGGVMPQTREHVFLARTLGINQLIVAINKMDAVNYDEKRYEEV 162 (425)
T ss_pred CeEEEEEECCCcccchhhHhhchhcCCEEEEEEEcccCCCCCcchHHHHHHHHHcCCCeEEEEEEccccccccHHHHHHH
Confidence 88999999999988766555557889999999999873222222111112222222346999999999975211
Q ss_pred CHHHHHHHHHcC-----CeEEEeccCCCCChHHHH
Q 030504 135 KAKQVTFHRKKN-----LQYYEISAKSNYNFEKPF 164 (176)
Q Consensus 135 ~~~~~~~~~~~~-----~~~~~~S~~~~~~v~~~~ 164 (176)
..+...++...+ ++++++||++|+|+++..
T Consensus 163 ~~~i~~~l~~~g~~~~~~~ii~iSA~~g~gi~~~~ 197 (425)
T PRK12317 163 KEEVSKLLKMVGYKPDDIPFIPVSAFEGDNVVKKS 197 (425)
T ss_pred HHHHHHHHHhhCCCcCcceEEEeecccCCCccccc
Confidence 123334444444 579999999999998743
|
|
| >PRK12298 obgE GTPase CgtA; Reviewed | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.8e-22 Score=145.88 Aligned_cols=158 Identities=15% Similarity=0.082 Sum_probs=107.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecC-cEEEEEEEeCCCcccccc-------ccccccccc
Q 030504 15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNC-GKIRFYCWDTAGQEKFGG-------LRDGYYIHG 86 (176)
Q Consensus 15 ~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~D~~g~~~~~~-------~~~~~~~~~ 86 (176)
.|+|+|.|+||||||+|++...+. ...+..++|.......+.. ....+.++||||...... .....+..+
T Consensus 161 dValVG~PNaGKSTLln~Lt~~k~--~vs~~p~TT~~p~~Giv~~~~~~~i~~vDtPGi~~~a~~~~~Lg~~~l~~i~ra 238 (390)
T PRK12298 161 DVGLLGLPNAGKSTFIRAVSAAKP--KVADYPFTTLVPNLGVVRVDDERSFVVADIPGLIEGASEGAGLGIRFLKHLERC 238 (390)
T ss_pred cEEEEcCCCCCHHHHHHHHhCCcc--cccCCCCCccCcEEEEEEeCCCcEEEEEeCCCccccccchhhHHHHHHHHHHhC
Confidence 599999999999999999775543 2233333444444333322 234589999999643211 112246789
Q ss_pred cEEEEEEeCC---ChhhhhhHHHHHHHHhhhc---CCCCEEEEEeCCCCCccccCHH-HHHHHHHcC--CeEEEeccCCC
Q 030504 87 QCAIIMFDVT---ARLTYKNVPTWHRDLCRVC---ENIPIVLCGNKVDVKNRQVKAK-QVTFHRKKN--LQYYEISAKSN 157 (176)
Q Consensus 87 ~~~i~v~d~~---~~~s~~~~~~~~~~~~~~~---~~~p~liv~nK~Dl~~~~~~~~-~~~~~~~~~--~~~~~~S~~~~ 157 (176)
+++++|+|++ +...++....|...+.... .+.|+++|+||+|+.......+ ...+.+..+ ..++.+||+++
T Consensus 239 dvlL~VVD~s~~~~~d~~e~~~~l~~eL~~~~~~L~~kP~IlVlNKiDl~~~~el~~~l~~l~~~~~~~~~Vi~ISA~tg 318 (390)
T PRK12298 239 RVLLHLIDIAPIDGSDPVENARIIINELEKYSPKLAEKPRWLVFNKIDLLDEEEAEERAKAIVEALGWEGPVYLISAASG 318 (390)
T ss_pred CEEEEEeccCcccccChHHHHHHHHHHHHhhhhhhcCCCEEEEEeCCccCChHHHHHHHHHHHHHhCCCCCEEEEECCCC
Confidence 9999999988 3445565666666655432 4789999999999975432222 223344434 46899999999
Q ss_pred CChHHHHHHHHHHHhcC
Q 030504 158 YNFEKPFLYLARKLAGS 174 (176)
Q Consensus 158 ~~v~~~~~~l~~~i~~~ 174 (176)
.|+++++++|.+.+.+.
T Consensus 319 ~GIdeLl~~I~~~L~~~ 335 (390)
T PRK12298 319 LGVKELCWDLMTFIEEN 335 (390)
T ss_pred cCHHHHHHHHHHHhhhC
Confidence 99999999999988654
|
|
| >PRK10218 GTP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.5e-21 Score=148.53 Aligned_cols=158 Identities=16% Similarity=0.192 Sum_probs=119.0
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHhc--CCCCCcc------------ccceeEEEeEEEEEecCcEEEEEEEeCCCcccccc
Q 030504 12 PSFKLVIVGDGGTGKTTFVKRHLT--GEFEKKY------------EPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGG 77 (176)
Q Consensus 12 ~~~~i~i~G~~~~GKttl~~~~~~--~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~ 77 (176)
...||+++|+.++|||||+++++. |.+...+ ..+.|++.......+....+.+.+|||||+..+..
T Consensus 4 ~iRnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~v~D~~~~E~erGiTi~~~~~~i~~~~~~inliDTPG~~df~~ 83 (607)
T PRK10218 4 KLRNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIKWNDYRINIVDTPGHADFGG 83 (607)
T ss_pred CceEEEEECCCCCcHHHHHHHHHHhcCCcccccccceeeeccccccccCceEEEEEEEEEecCCEEEEEEECCCcchhHH
Confidence 457899999999999999999886 4443221 23567777777777777889999999999999998
Q ss_pred ccccccccccEEEEEEeCCChhhhhhHHHHHHHHhhhcCCCCEEEEEeCCCCCccccCH---HHHHHHHH-------cCC
Q 030504 78 LRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKA---KQVTFHRK-------KNL 147 (176)
Q Consensus 78 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~~~~~~~---~~~~~~~~-------~~~ 147 (176)
.+..+++.+|++++|+|+.+....+....| ...... +.|.++++||+|+....... +...++.. ..+
T Consensus 84 ~v~~~l~~aDg~ILVVDa~~G~~~qt~~~l-~~a~~~--gip~IVviNKiD~~~a~~~~vl~ei~~l~~~l~~~~~~~~~ 160 (607)
T PRK10218 84 EVERVMSMVDSVLLVVDAFDGPMPQTRFVT-KKAFAY--GLKPIVVINKVDRPGARPDWVVDQVFDLFVNLDATDEQLDF 160 (607)
T ss_pred HHHHHHHhCCEEEEEEecccCccHHHHHHH-HHHHHc--CCCEEEEEECcCCCCCchhHHHHHHHHHHhccCccccccCC
Confidence 899999999999999999876443333333 333333 88999999999997644322 23333322 347
Q ss_pred eEEEeccCCCC----------ChHHHHHHHHHHHh
Q 030504 148 QYYEISAKSNY----------NFEKPFLYLARKLA 172 (176)
Q Consensus 148 ~~~~~S~~~~~----------~v~~~~~~l~~~i~ 172 (176)
+++.+||++|. |+..+++.++..+.
T Consensus 161 PVi~~SA~~G~~~~~~~~~~~~i~~Lld~Ii~~iP 195 (607)
T PRK10218 161 PIVYASALNGIAGLDHEDMAEDMTPLYQAIVDHVP 195 (607)
T ss_pred CEEEeEhhcCcccCCccccccchHHHHHHHHHhCC
Confidence 89999999998 58888888887765
|
|
| >cd00880 Era_like Era (E | Back alignment and domain information |
|---|
Probab=99.89 E-value=5.4e-22 Score=128.55 Aligned_cols=150 Identities=18% Similarity=0.219 Sum_probs=102.0
Q ss_pred EEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecC-cEEEEEEEeCCCcccccccc-------ccccccccEE
Q 030504 18 IVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNC-GKIRFYCWDTAGQEKFGGLR-------DGYYIHGQCA 89 (176)
Q Consensus 18 i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~D~~g~~~~~~~~-------~~~~~~~~~~ 89 (176)
++|++|+|||||++++....... .....+.+.......... ....+.+||+||........ ..++..+|++
T Consensus 1 i~G~~gsGKstl~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~~~~~d~i 79 (163)
T cd00880 1 LFGRTNAGKSSLLNALLGQEVAI-VSPVPGTTTDPVEYVWELGPLGPVVLIDTPGIDEAGGLGREREELARRVLERADLI 79 (163)
T ss_pred CcCCCCCCHHHHHHHHhCccccc-cCCCCCcEECCeEEEEEecCCCcEEEEECCCCCccccchhhHHHHHHHHHHhCCEE
Confidence 58999999999999977544331 122222222222222221 25678999999987654333 3467889999
Q ss_pred EEEEeCCChhhhhhHHHHHHHHhhhcCCCCEEEEEeCCCCCccccCHHH-----HHHHHHcCCeEEEeccCCCCChHHHH
Q 030504 90 IIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQ-----VTFHRKKNLQYYEISAKSNYNFEKPF 164 (176)
Q Consensus 90 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~~~~~~~~~-----~~~~~~~~~~~~~~S~~~~~~v~~~~ 164 (176)
++|+|+++........ +...... .+.|+++|+||+|+......... .......+.+++++|++++.|+++++
T Consensus 80 l~v~~~~~~~~~~~~~-~~~~~~~--~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~v~~l~ 156 (163)
T cd00880 80 LFVVDADLRADEEEEK-LLELLRE--RGKPVLLVLNKIDLLPEEEEEELLELRLLILLLLLGLPVIAVSALTGEGIDELR 156 (163)
T ss_pred EEEEeCCCCCCHHHHH-HHHHHHh--cCCeEEEEEEccccCChhhHHHHHHHHHhhcccccCCceEEEeeeccCCHHHHH
Confidence 9999999876555543 3333333 38999999999999764433332 12233346889999999999999999
Q ss_pred HHHHHHH
Q 030504 165 LYLARKL 171 (176)
Q Consensus 165 ~~l~~~i 171 (176)
.++.+.+
T Consensus 157 ~~l~~~~ 163 (163)
T cd00880 157 EALIEAL 163 (163)
T ss_pred HHHHhhC
Confidence 9998753
|
coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se |
| >TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha | Back alignment and domain information |
|---|
Probab=99.89 E-value=5.3e-22 Score=147.13 Aligned_cols=153 Identities=19% Similarity=0.163 Sum_probs=105.7
Q ss_pred CCCeeEEEEEcCCCCcHHHHHHHHhc--CCCCCc---------------------------cccceeEEEeEEEEEecCc
Q 030504 10 DYPSFKLVIVGDGGTGKTTFVKRHLT--GEFEKK---------------------------YEPTIGVEVHPLDFFTNCG 60 (176)
Q Consensus 10 ~~~~~~i~i~G~~~~GKttl~~~~~~--~~~~~~---------------------------~~~~~~~~~~~~~~~~~~~ 60 (176)
+.+.++|+++|+.++|||||+.+++. |..... .....|.+.......+...
T Consensus 4 ~~~~~~v~i~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~~~~~~~~ 83 (426)
T TIGR00483 4 EKEHINVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAHWKFETD 83 (426)
T ss_pred CCceeEEEEEeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEEEEEEccC
Confidence 56789999999999999999999875 322110 0112355555555566667
Q ss_pred EEEEEEEeCCCccccccccccccccccEEEEEEeCCChhhhhh--HHHHHHHHhhhcCCCCEEEEEeCCCCCcccc----
Q 030504 61 KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKN--VPTWHRDLCRVCENIPIVLCGNKVDVKNRQV---- 134 (176)
Q Consensus 61 ~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~--~~~~~~~~~~~~~~~p~liv~nK~Dl~~~~~---- 134 (176)
.+.+.+|||||++.+.......+..+|++++|+|++++.++.. ...++ .+.......|+++++||+|+.+...
T Consensus 84 ~~~i~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~t~~~~-~~~~~~~~~~iIVviNK~Dl~~~~~~~~~ 162 (426)
T TIGR00483 84 KYEVTIVDCPGHRDFIKNMITGASQADAAVLVVAVGDGEFEVQPQTREHA-FLARTLGINQLIVAINKMDSVNYDEEEFE 162 (426)
T ss_pred CeEEEEEECCCHHHHHHHHHhhhhhCCEEEEEEECCCCCcccCCchHHHH-HHHHHcCCCeEEEEEEChhccCccHHHHH
Confidence 7889999999999876666666789999999999998743211 11111 2222223457999999999964211
Q ss_pred --CHHHHHHHHHcC-----CeEEEeccCCCCChHHH
Q 030504 135 --KAKQVTFHRKKN-----LQYYEISAKSNYNFEKP 163 (176)
Q Consensus 135 --~~~~~~~~~~~~-----~~~~~~S~~~~~~v~~~ 163 (176)
..+...+++..+ ++++++||++|.|+.+.
T Consensus 163 ~~~~ei~~~~~~~g~~~~~~~~i~iSA~~g~ni~~~ 198 (426)
T TIGR00483 163 AIKKEVSNLIKKVGYNPDTVPFIPISAWNGDNVIKK 198 (426)
T ss_pred HHHHHHHHHHHHcCCCcccceEEEeecccccccccc
Confidence 223345555554 67999999999999863
|
This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels. |
| >PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed | Back alignment and domain information |
|---|
Probab=99.89 E-value=4.4e-22 Score=155.29 Aligned_cols=156 Identities=15% Similarity=0.195 Sum_probs=104.1
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEE--EEEecCcEEEEEEEeCCCccccc-cc----------
Q 030504 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPL--DFFTNCGKIRFYCWDTAGQEKFG-GL---------- 78 (176)
Q Consensus 12 ~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~D~~g~~~~~-~~---------- 78 (176)
...||+++|.+|||||||+|+++...... .....|++.... .+..++. .+.+|||||..+.. ..
T Consensus 449 ~~~kI~ivG~~nvGKSSLin~l~~~~~~~-v~~~~gtT~d~~~~~~~~~~~--~~~liDTaG~~~~~~~~~~~e~~~~~r 525 (712)
T PRK09518 449 GLRRVALVGRPNVGKSSLLNQLTHEERAV-VNDLAGTTRDPVDEIVEIDGE--DWLFIDTAGIKRRQHKLTGAEYYSSLR 525 (712)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCccccc-cCCCCCCCcCcceeEEEECCC--EEEEEECCCcccCcccchhHHHHHHHH
Confidence 45899999999999999999988765311 112223333333 3334433 46799999964211 11
Q ss_pred cccccccccEEEEEEeCCChhhhhhHHHHHHHHhhhcCCCCEEEEEeCCCCCccccCHHHHH-HHHH----cCCeEEEec
Q 030504 79 RDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVT-FHRK----KNLQYYEIS 153 (176)
Q Consensus 79 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~~~~~~~~~~~-~~~~----~~~~~~~~S 153 (176)
....++.+|++++|+|++++.+.+.... +..+.. .++|+++|+||+|+.+......... +... ...+++.+|
T Consensus 526 ~~~~i~~advvilViDat~~~s~~~~~i-~~~~~~--~~~piIiV~NK~DL~~~~~~~~~~~~~~~~l~~~~~~~ii~iS 602 (712)
T PRK09518 526 TQAAIERSELALFLFDASQPISEQDLKV-MSMAVD--AGRALVLVFNKWDLMDEFRRQRLERLWKTEFDRVTWARRVNLS 602 (712)
T ss_pred HHHHhhcCCEEEEEEECCCCCCHHHHHH-HHHHHH--cCCCEEEEEEchhcCChhHHHHHHHHHHHhccCCCCCCEEEEE
Confidence 1234678999999999998877766543 333333 3899999999999975322222211 1111 135679999
Q ss_pred cCCCCChHHHHHHHHHHHhc
Q 030504 154 AKSNYNFEKPFLYLARKLAG 173 (176)
Q Consensus 154 ~~~~~~v~~~~~~l~~~i~~ 173 (176)
|++|.|++++|+.+.+.+.+
T Consensus 603 Aktg~gv~~L~~~i~~~~~~ 622 (712)
T PRK09518 603 AKTGWHTNRLAPAMQEALES 622 (712)
T ss_pred CCCCCCHHHHHHHHHHHHHH
Confidence 99999999999999987754
|
|
| >COG1159 Era GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.1e-21 Score=134.40 Aligned_cols=161 Identities=16% Similarity=0.155 Sum_probs=114.7
Q ss_pred CCCeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccc--------ccccc
Q 030504 10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFG--------GLRDG 81 (176)
Q Consensus 10 ~~~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~--------~~~~~ 81 (176)
....--|+++|.|++|||||+|++++.+ ....++...+|+......+.....++.+.||||...-+ .....
T Consensus 3 ~~ksGfVaIiGrPNvGKSTLlN~l~G~K-isIvS~k~QTTR~~I~GI~t~~~~QiIfvDTPGih~pk~~l~~~m~~~a~~ 81 (298)
T COG1159 3 KFKSGFVAIIGRPNVGKSTLLNALVGQK-ISIVSPKPQTTRNRIRGIVTTDNAQIIFVDTPGIHKPKHALGELMNKAARS 81 (298)
T ss_pred CceEEEEEEEcCCCCcHHHHHHHHhcCc-eEeecCCcchhhhheeEEEEcCCceEEEEeCCCCCCcchHHHHHHHHHHHH
Confidence 3456779999999999999999965444 34456666677777776666667889999999954322 12333
Q ss_pred ccccccEEEEEEeCCChhhhhhHHHH-HHHHhhhcCCCCEEEEEeCCCCCcccc-CHHHHHHHHHc--CCeEEEeccCCC
Q 030504 82 YYIHGQCAIIMFDVTARLTYKNVPTW-HRDLCRVCENIPIVLCGNKVDVKNRQV-KAKQVTFHRKK--NLQYYEISAKSN 157 (176)
Q Consensus 82 ~~~~~~~~i~v~d~~~~~s~~~~~~~-~~~~~~~~~~~p~liv~nK~Dl~~~~~-~~~~~~~~~~~--~~~~~~~S~~~~ 157 (176)
.+..+|++++|+|+++...- -..+ ++.+.. .+.|+++++||.|...... .....+.+... ....+++||++|
T Consensus 82 sl~dvDlilfvvd~~~~~~~--~d~~il~~lk~--~~~pvil~iNKID~~~~~~~l~~~~~~~~~~~~f~~ivpiSA~~g 157 (298)
T COG1159 82 ALKDVDLILFVVDADEGWGP--GDEFILEQLKK--TKTPVILVVNKIDKVKPKTVLLKLIAFLKKLLPFKEIVPISALKG 157 (298)
T ss_pred HhccCcEEEEEEeccccCCc--cHHHHHHHHhh--cCCCeEEEEEccccCCcHHHHHHHHHHHHhhCCcceEEEeecccc
Confidence 46789999999999875322 2222 223322 3789999999999876544 23333333332 247999999999
Q ss_pred CChHHHHHHHHHHHhcCC
Q 030504 158 YNFEKPFLYLARKLAGST 175 (176)
Q Consensus 158 ~~v~~~~~~l~~~i~~~~ 175 (176)
.|++.+.+.+...+.+.|
T Consensus 158 ~n~~~L~~~i~~~Lpeg~ 175 (298)
T COG1159 158 DNVDTLLEIIKEYLPEGP 175 (298)
T ss_pred CCHHHHHHHHHHhCCCCC
Confidence 999999999999887765
|
|
| >KOG4423 consensus GTP-binding protein-like, RAS superfamily [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.6e-24 Score=136.65 Aligned_cols=162 Identities=33% Similarity=0.521 Sum_probs=140.0
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecC-cEEEEEEEeCCCccccccccccccccccEEE
Q 030504 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNC-GKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (176)
Q Consensus 12 ~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 90 (176)
--+|++|+|.-++|||+++.+++...+...|..++|.++......-+. ..+.+++||..|++++..+.+-+++.+++.+
T Consensus 24 hL~k~lVig~~~vgkts~i~ryv~~nfs~~yRAtIgvdfalkVl~wdd~t~vRlqLwdIagQerfg~mtrVyykea~~~~ 103 (229)
T KOG4423|consen 24 HLFKVLVIGDLGVGKTSSIKRYVHQNFSYHYRATIGVDFALKVLQWDDKTIVRLQLWDIAGQERFGNMTRVYYKEAHGAF 103 (229)
T ss_pred hhhhhheeeeccccchhHHHHHHHHHHHHHHHHHHhHHHHHHHhccChHHHHHHHHhcchhhhhhcceEEEEecCCcceE
Confidence 457999999999999999999999999999999999888877665543 3568899999999999999999999999999
Q ss_pred EEEeCCChhhhhhHHHHHHHHhhhc-----CCCCEEEEEeCCCCCccccC---HHHHHHHHHcCC-eEEEeccCCCCChH
Q 030504 91 IMFDVTARLTYKNVPTWHRDLCRVC-----ENIPIVLCGNKVDVKNRQVK---AKQVTFHRKKNL-QYYEISAKSNYNFE 161 (176)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~~-----~~~p~liv~nK~Dl~~~~~~---~~~~~~~~~~~~-~~~~~S~~~~~~v~ 161 (176)
+|||+++...|+...+|.+.+.... ...|+++.+||||....... ....++.+++|+ ..+++|++.+.+++
T Consensus 104 iVfdvt~s~tfe~~skwkqdldsk~qLpng~Pv~~vllankCd~e~~a~~~~~~~~d~f~kengf~gwtets~Kenkni~ 183 (229)
T KOG4423|consen 104 IVFDVTRSLTFEPVSKWKQDLDSKLQLPNGTPVPCVLLANKCDQEKSAKNEATRQFDNFKKENGFEGWTETSAKENKNIP 183 (229)
T ss_pred EEEEccccccccHHHHHHHhccCcccCCCCCcchheeccchhccChHhhhhhHHHHHHHHhccCccceeeeccccccChh
Confidence 9999999999999999999987653 24678999999999864433 345577888885 69999999999999
Q ss_pred HHHHHHHHHHhc
Q 030504 162 KPFLYLARKLAG 173 (176)
Q Consensus 162 ~~~~~l~~~i~~ 173 (176)
|+-+.+++++.-
T Consensus 184 Ea~r~lVe~~lv 195 (229)
T KOG4423|consen 184 EAQRELVEKILV 195 (229)
T ss_pred HHHHHHHHHHHh
Confidence 999999998754
|
|
| >TIGR01394 TypA_BipA GTP-binding protein TypA/BipA | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.3e-21 Score=148.92 Aligned_cols=157 Identities=16% Similarity=0.225 Sum_probs=116.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc--CCCCCcc------------ccceeEEEeEEEEEecCcEEEEEEEeCCCcccccccc
Q 030504 14 FKLVIVGDGGTGKTTFVKRHLT--GEFEKKY------------EPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLR 79 (176)
Q Consensus 14 ~~i~i~G~~~~GKttl~~~~~~--~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~ 79 (176)
.||+|+|+.++|||||+.+++. |.+.... ....|++.......+.+..+.+.+|||||+..|...+
T Consensus 2 RNIaIiGHvd~GKTTLv~~LL~~sg~~~~~~~v~~~~~D~~~~ErerGiTI~~~~~~v~~~~~kinlIDTPGh~DF~~ev 81 (594)
T TIGR01394 2 RNIAIIAHVDHGKTTLVDALLKQSGTFRANEAVAERVMDSNDLERERGITILAKNTAIRYNGTKINIVDTPGHADFGGEV 81 (594)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhcCCCcccccceeecccCchHHHhCCccEEeeeEEEEECCEEEEEEECCCHHHHHHHH
Confidence 4899999999999999999885 4332221 1234566666666666678899999999999998888
Q ss_pred ccccccccEEEEEEeCCChhhhhhHHHHHHHHhhhcCCCCEEEEEeCCCCCcccc---CHHHHHHHH-------HcCCeE
Q 030504 80 DGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQV---KAKQVTFHR-------KKNLQY 149 (176)
Q Consensus 80 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~~~~~---~~~~~~~~~-------~~~~~~ 149 (176)
..++..+|++++|+|+.+... .....++..+... +.|.++++||.|+..... ..+...++. +..+++
T Consensus 82 ~~~l~~aD~alLVVDa~~G~~-~qT~~~l~~a~~~--~ip~IVviNKiD~~~a~~~~v~~ei~~l~~~~g~~~e~l~~pv 158 (594)
T TIGR01394 82 ERVLGMVDGVLLLVDASEGPM-PQTRFVLKKALEL--GLKPIVVINKIDRPSARPDEVVDEVFDLFAELGADDEQLDFPI 158 (594)
T ss_pred HHHHHhCCEEEEEEeCCCCCc-HHHHHHHHHHHHC--CCCEEEEEECCCCCCcCHHHHHHHHHHHHHhhccccccccCcE
Confidence 888999999999999987542 2333445555544 889999999999975432 223333332 235789
Q ss_pred EEeccCCCC----------ChHHHHHHHHHHHhc
Q 030504 150 YEISAKSNY----------NFEKPFLYLARKLAG 173 (176)
Q Consensus 150 ~~~S~~~~~----------~v~~~~~~l~~~i~~ 173 (176)
+.+||++|. |++.+|+.+++.+..
T Consensus 159 l~~SA~~g~~~~~~~~~~~gi~~Lld~Iv~~lP~ 192 (594)
T TIGR01394 159 VYASGRAGWASLDLDDPSDNMAPLFDAIVRHVPA 192 (594)
T ss_pred EechhhcCcccccCcccccCHHHHHHHHHHhCCC
Confidence 999999996 799999999987753
|
This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown. |
| >COG0486 ThdF Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.88 E-value=2e-21 Score=140.21 Aligned_cols=155 Identities=17% Similarity=0.184 Sum_probs=118.1
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccc--------cccc
Q 030504 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGL--------RDGY 82 (176)
Q Consensus 11 ~~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~--------~~~~ 82 (176)
...+|++++|.||+|||||+|. +.++.....+...|+|++..+..++-.++.+.+.||+|....... ....
T Consensus 215 r~G~kvvIiG~PNvGKSSLLNa-L~~~d~AIVTdI~GTTRDviee~i~i~G~pv~l~DTAGiRet~d~VE~iGIeRs~~~ 293 (454)
T COG0486 215 REGLKVVIIGRPNVGKSSLLNA-LLGRDRAIVTDIAGTTRDVIEEDINLNGIPVRLVDTAGIRETDDVVERIGIERAKKA 293 (454)
T ss_pred hcCceEEEECCCCCcHHHHHHH-HhcCCceEecCCCCCccceEEEEEEECCEEEEEEecCCcccCccHHHHHHHHHHHHH
Confidence 4678999999999999999998 556656666778899999999999989999999999997654432 2334
Q ss_pred cccccEEEEEEeCCChhhhhhHHHHHHHHhhhcCCCCEEEEEeCCCCCccccCHHHHHHHHHcCCeEEEeccCCCCChHH
Q 030504 83 YIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEK 162 (176)
Q Consensus 83 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~ 162 (176)
+.++|.+++|+|.+.+..-+... .+. ....++|+++|.||.|+......... ....+.+++.+|+++++|++.
T Consensus 294 i~~ADlvL~v~D~~~~~~~~d~~-~~~---~~~~~~~~i~v~NK~DL~~~~~~~~~---~~~~~~~~i~iSa~t~~Gl~~ 366 (454)
T COG0486 294 IEEADLVLFVLDASQPLDKEDLA-LIE---LLPKKKPIIVVLNKADLVSKIELESE---KLANGDAIISISAKTGEGLDA 366 (454)
T ss_pred HHhCCEEEEEEeCCCCCchhhHH-HHH---hcccCCCEEEEEechhcccccccchh---hccCCCceEEEEecCccCHHH
Confidence 77899999999999862212111 111 23358999999999999876553333 223344789999999999999
Q ss_pred HHHHHHHHHhc
Q 030504 163 PFLYLARKLAG 173 (176)
Q Consensus 163 ~~~~l~~~i~~ 173 (176)
+.+.|.+.+..
T Consensus 367 L~~~i~~~~~~ 377 (454)
T COG0486 367 LREAIKQLFGK 377 (454)
T ss_pred HHHHHHHHHhh
Confidence 99998876543
|
|
| >cd01876 YihA_EngB The YihA (EngB) subfamily | Back alignment and domain information |
|---|
Probab=99.87 E-value=3.6e-21 Score=125.91 Aligned_cols=149 Identities=15% Similarity=0.153 Sum_probs=99.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCcccc----------ccccccccc
Q 030504 15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKF----------GGLRDGYYI 84 (176)
Q Consensus 15 ~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~----------~~~~~~~~~ 84 (176)
.|+++|.+|+|||||++.+.++.......++.+.+........+. .+.+|||||.... ......++.
T Consensus 1 ~i~l~G~~g~GKTtL~~~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~~~D~~g~~~~~~~~~~~~~~~~~~~~~~~ 77 (170)
T cd01876 1 EIAFAGRSNVGKSSLINALTNRKKLARTSKTPGKTQLINFFNVND---KFRLVDLPGYGYAKVSKEVKEKWGKLIEEYLE 77 (170)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCceeeecCCCCcceeEEEEEccC---eEEEecCCCccccccCHHHHHHHHHHHHHHHH
Confidence 489999999999999999886666666666666555544443332 7899999995332 222233333
Q ss_pred ---cccEEEEEEeCCChhhh--hhHHHHHHHHhhhcCCCCEEEEEeCCCCCccccCH----HHHHHHH--HcCCeEEEec
Q 030504 85 ---HGQCAIIMFDVTARLTY--KNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKA----KQVTFHR--KKNLQYYEIS 153 (176)
Q Consensus 85 ---~~~~~i~v~d~~~~~s~--~~~~~~~~~~~~~~~~~p~liv~nK~Dl~~~~~~~----~~~~~~~--~~~~~~~~~S 153 (176)
..+++++++|.....+. ..+..|+ ... +.|+++++||+|+....... ......+ ....+++++|
T Consensus 78 ~~~~~~~~~~v~d~~~~~~~~~~~~~~~l---~~~--~~~vi~v~nK~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~S 152 (170)
T cd01876 78 NRENLKGVVLLIDSRHGPTEIDLEMLDWL---EEL--GIPFLVVLTKADKLKKSELAKALKEIKKELKLFEIDPPIILFS 152 (170)
T ss_pred hChhhhEEEEEEEcCcCCCHhHHHHHHHH---HHc--CCCEEEEEEchhcCChHHHHHHHHHHHHHHHhccCCCceEEEe
Confidence 45788999998865322 2223333 332 68999999999985432211 1122222 3456899999
Q ss_pred cCCCCChHHHHHHHHHHH
Q 030504 154 AKSNYNFEKPFLYLARKL 171 (176)
Q Consensus 154 ~~~~~~v~~~~~~l~~~i 171 (176)
++++.|+++++++|.+.+
T Consensus 153 a~~~~~~~~l~~~l~~~~ 170 (170)
T cd01876 153 SLKGQGIDELRALIEKWL 170 (170)
T ss_pred cCCCCCHHHHHHHHHHhC
Confidence 999999999999998753
|
This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target. |
| >cd04166 CysN_ATPS CysN_ATPS subfamily | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.6e-21 Score=131.79 Aligned_cols=146 Identities=20% Similarity=0.193 Sum_probs=95.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCC-CCc----------------------------cccceeEEEeEEEEEecCcEEEEE
Q 030504 15 KLVIVGDGGTGKTTFVKRHLTGEF-EKK----------------------------YEPTIGVEVHPLDFFTNCGKIRFY 65 (176)
Q Consensus 15 ~i~i~G~~~~GKttl~~~~~~~~~-~~~----------------------------~~~~~~~~~~~~~~~~~~~~~~~~ 65 (176)
||+++|++++|||||+++++...- ... .....|++.......+......+.
T Consensus 1 ~i~iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~ 80 (208)
T cd04166 1 RFLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFSTPKRKFI 80 (208)
T ss_pred CEEEEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEEecCCceEE
Confidence 689999999999999999864211 000 000134455555555555667889
Q ss_pred EEeCCCccccccccccccccccEEEEEEeCCChhhhhhHHHHHHHHhhhcCCCCEEEEEeCCCCCcccc------CHHHH
Q 030504 66 CWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQV------KAKQV 139 (176)
Q Consensus 66 ~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~~~~~------~~~~~ 139 (176)
+|||||++.+.......+..+|++++|+|++++..-+.. .....+ ......++++|+||.|+..... ..+..
T Consensus 81 liDTpG~~~~~~~~~~~~~~ad~~llVvD~~~~~~~~~~-~~~~~~-~~~~~~~iIvviNK~D~~~~~~~~~~~i~~~~~ 158 (208)
T cd04166 81 IADTPGHEQYTRNMVTGASTADLAILLVDARKGVLEQTR-RHSYIL-SLLGIRHVVVAVNKMDLVDYSEEVFEEIVADYL 158 (208)
T ss_pred EEECCcHHHHHHHHHHhhhhCCEEEEEEECCCCccHhHH-HHHHHH-HHcCCCcEEEEEEchhcccCCHHHHHHHHHHHH
Confidence 999999988766556667899999999999876422221 111222 2222345788999999864221 12233
Q ss_pred HHHHHcC---CeEEEeccCCCCChHH
Q 030504 140 TFHRKKN---LQYYEISAKSNYNFEK 162 (176)
Q Consensus 140 ~~~~~~~---~~~~~~S~~~~~~v~~ 162 (176)
.+++..+ .+++.+||++|.|+.+
T Consensus 159 ~~~~~~~~~~~~ii~iSA~~g~ni~~ 184 (208)
T cd04166 159 AFAAKLGIEDITFIPISALDGDNVVS 184 (208)
T ss_pred HHHHHcCCCCceEEEEeCCCCCCCcc
Confidence 4455555 4589999999999875
|
CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN. |
| >TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2 | Back alignment and domain information |
|---|
Probab=99.87 E-value=5.3e-21 Score=145.14 Aligned_cols=153 Identities=22% Similarity=0.261 Sum_probs=100.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCc----cccceeEEEeEEEEEe------------cCcEEEEEEEeCCCccccccc
Q 030504 15 KLVIVGDGGTGKTTFVKRHLTGEFEKK----YEPTIGVEVHPLDFFT------------NCGKIRFYCWDTAGQEKFGGL 78 (176)
Q Consensus 15 ~i~i~G~~~~GKttl~~~~~~~~~~~~----~~~~~~~~~~~~~~~~------------~~~~~~~~~~D~~g~~~~~~~ 78 (176)
-|+++|++++|||||++++....+... .+.+.|.+........ ..+...+.+|||||++.+..+
T Consensus 6 iV~IiG~~d~GKTSLln~l~~~~v~~~e~ggiTq~iG~~~v~~~~~~~~~~~~~~~~~v~~~~~~l~~iDTpG~e~f~~l 85 (590)
T TIGR00491 6 IVSVLGHVDHGKTTLLDKIRGSAVAKREAGGITQHIGATEIPMDVIEGICGDLLKKFKIRLKIPGLLFIDTPGHEAFTNL 85 (590)
T ss_pred EEEEECCCCCCHHHHHHHHhccccccccCCceecccCeeEeeeccccccccccccccccccccCcEEEEECCCcHhHHHH
Confidence 599999999999999999887665432 2223333322211100 001123889999999999999
Q ss_pred cccccccccEEEEEEeCCChhhhhhHHHHHHHHhhhcCCCCEEEEEeCCCCCcccc--------------CH----HH--
Q 030504 79 RDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQV--------------KA----KQ-- 138 (176)
Q Consensus 79 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~~~~~--------------~~----~~-- 138 (176)
+..++..+|++++|+|+++....+.... +..+.. .+.|+++++||+|+..... .. +.
T Consensus 86 ~~~~~~~aD~~IlVvD~~~g~~~qt~e~-i~~l~~--~~vpiIVv~NK~Dl~~~~~~~~~~~f~e~sak~~~~v~~~~~~ 162 (590)
T TIGR00491 86 RKRGGALADLAILIVDINEGFKPQTQEA-LNILRM--YKTPFVVAANKIDRIPGWRSHEGRPFMESFSKQEIQVQQNLDT 162 (590)
T ss_pred HHHHHhhCCEEEEEEECCcCCCHhHHHH-HHHHHH--cCCCEEEEEECCCccchhhhccCchHHHHHHhhhHHHHHHHHH
Confidence 8889999999999999997432222211 122222 3889999999999863110 00 00
Q ss_pred ------HHHHH------------H--cCCeEEEeccCCCCChHHHHHHHHHH
Q 030504 139 ------VTFHR------------K--KNLQYYEISAKSNYNFEKPFLYLARK 170 (176)
Q Consensus 139 ------~~~~~------------~--~~~~~~~~S~~~~~~v~~~~~~l~~~ 170 (176)
..+.. . ...+++++||++|+|+++++.++...
T Consensus 163 ~~~~lv~~l~~~G~~~e~~~~i~~~~~~v~iVpVSA~tGeGideLl~~l~~l 214 (590)
T TIGR00491 163 KVYNLVIKLHEEGFEAERFDRVTDFTKTVAIIPISAITGEGIPELLTMLAGL 214 (590)
T ss_pred HHHHHHHHHHhcCccHHhhhhhhhcCCCceEEEeecCCCCChhHHHHHHHHH
Confidence 00110 1 13689999999999999999998753
|
This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region. |
| >TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma | Back alignment and domain information |
|---|
Probab=99.87 E-value=4.7e-21 Score=141.03 Aligned_cols=159 Identities=18% Similarity=0.173 Sum_probs=104.1
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHhcCCCCCcccc--ceeEEEeEE----E------------EEe----cC------cEE
Q 030504 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEP--TIGVEVHPL----D------------FFT----NC------GKI 62 (176)
Q Consensus 11 ~~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~--~~~~~~~~~----~------------~~~----~~------~~~ 62 (176)
.+.++|+++|+.++|||||++++. +.+...+.. ..|.+.... . ++. +. ...
T Consensus 2 ~~~~~i~iiG~~~~GKSTL~~~Lt-~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (406)
T TIGR03680 2 QPEVNIGMVGHVDHGKTTLTKALT-GVWTDTHSEELKRGISIRLGYADAEIYKCPECDGPECYTTEPVCPNCGSETELLR 80 (406)
T ss_pred CceEEEEEEccCCCCHHHHHHHHh-CeecccCHhHHHcCceeEecccccccccccccCcccccccccccccccccccccc
Confidence 468999999999999999999864 332211111 111111111 0 000 11 246
Q ss_pred EEEEEeCCCccccccccccccccccEEEEEEeCCChh-hhhhHHHHHHHHhhhcCCCCEEEEEeCCCCCccccC----HH
Q 030504 63 RFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARL-TYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVK----AK 137 (176)
Q Consensus 63 ~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~~~~~~----~~ 137 (176)
.+.+||+||++.+...+...+..+|++++|+|++++. .-+... .+..+ ......|+++++||+|+.+.... .+
T Consensus 81 ~i~liDtPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~~~~qt~e-~l~~l-~~~gi~~iIVvvNK~Dl~~~~~~~~~~~~ 158 (406)
T TIGR03680 81 RVSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTKE-HLMAL-EIIGIKNIVIVQNKIDLVSKEKALENYEE 158 (406)
T ss_pred EEEEEECCCHHHHHHHHHHHHHHCCEEEEEEECCCCccccchHH-HHHHH-HHcCCCeEEEEEEccccCCHHHHHHHHHH
Confidence 7899999999999887777788899999999999753 222222 22222 22224578999999999753221 12
Q ss_pred HHHHHHHc---CCeEEEeccCCCCChHHHHHHHHHHHh
Q 030504 138 QVTFHRKK---NLQYYEISAKSNYNFEKPFLYLARKLA 172 (176)
Q Consensus 138 ~~~~~~~~---~~~~~~~S~~~~~~v~~~~~~l~~~i~ 172 (176)
..++.... +++++++||++|+|+++++++|...+.
T Consensus 159 i~~~l~~~~~~~~~ii~vSA~~g~gi~~L~e~L~~~l~ 196 (406)
T TIGR03680 159 IKEFVKGTVAENAPIIPVSALHNANIDALLEAIEKFIP 196 (406)
T ss_pred HHhhhhhcccCCCeEEEEECCCCCChHHHHHHHHHhCC
Confidence 22333332 678999999999999999999998654
|
eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA. |
| >PRK04000 translation initiation factor IF-2 subunit gamma; Validated | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.2e-20 Score=138.81 Aligned_cols=164 Identities=16% Similarity=0.115 Sum_probs=104.2
Q ss_pred CCCCCCeeEEEEEcCCCCcHHHHHHHHhcCCCCCccc--cceeEEEeEE----EE--------------E--ec------
Q 030504 7 QTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYE--PTIGVEVHPL----DF--------------F--TN------ 58 (176)
Q Consensus 7 ~~~~~~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~--~~~~~~~~~~----~~--------------~--~~------ 58 (176)
+....++++|+++|+.++|||||+.++. +.+..... ...|.+.... .. . .+
T Consensus 3 ~~~~~~~~ni~v~Gh~d~GKSTL~~~L~-~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (411)
T PRK04000 3 WEKVQPEVNIGMVGHVDHGKTTLVQALT-GVWTDRHSEELKRGITIRLGYADATIRKCPDCEEPEAYTTEPKCPNCGSET 81 (411)
T ss_pred cccCCCcEEEEEEccCCCCHHHHHHHhh-CeecccCHhHHhcCcEEEecccccccccccccCcccccccccccccccccc
Confidence 3456788999999999999999999863 32211111 0112222211 00 0 00
Q ss_pred CcEEEEEEEeCCCccccccccccccccccEEEEEEeCCChh-hhhhHHHHHHHHhhhcCCCCEEEEEeCCCCCccccC--
Q 030504 59 CGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARL-TYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVK-- 135 (176)
Q Consensus 59 ~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~~~~~~-- 135 (176)
.....+.+|||||++.+..........+|++++|+|++++. ..+.... +..+.. ....|+++|+||+|+.+....
T Consensus 82 ~~~~~i~liDtPG~~~f~~~~~~~~~~~D~~llVVDa~~~~~~~~t~~~-l~~l~~-~~i~~iiVVlNK~Dl~~~~~~~~ 159 (411)
T PRK04000 82 ELLRRVSFVDAPGHETLMATMLSGAALMDGAILVIAANEPCPQPQTKEH-LMALDI-IGIKNIVIVQNKIDLVSKERALE 159 (411)
T ss_pred ccccEEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCCChhHHHH-HHHHHH-cCCCcEEEEEEeeccccchhHHH
Confidence 01357899999999987665555566789999999999753 2222222 222222 223478999999999753321
Q ss_pred --HHHHHHHHH---cCCeEEEeccCCCCChHHHHHHHHHHHhc
Q 030504 136 --AKQVTFHRK---KNLQYYEISAKSNYNFEKPFLYLARKLAG 173 (176)
Q Consensus 136 --~~~~~~~~~---~~~~~~~~S~~~~~~v~~~~~~l~~~i~~ 173 (176)
.+...+++. .+.+++++||++|.|+++++++|...+..
T Consensus 160 ~~~~i~~~l~~~~~~~~~ii~vSA~~g~gI~~L~~~L~~~l~~ 202 (411)
T PRK04000 160 NYEQIKEFVKGTVAENAPIIPVSALHKVNIDALIEAIEEEIPT 202 (411)
T ss_pred HHHHHHHHhccccCCCCeEEEEECCCCcCHHHHHHHHHHhCCC
Confidence 122233332 25789999999999999999999987653
|
|
| >COG1160 Predicted GTPases [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.86 E-value=4.8e-21 Score=137.96 Aligned_cols=151 Identities=17% Similarity=0.064 Sum_probs=109.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccc---------cccccccc
Q 030504 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFG---------GLRDGYYI 84 (176)
Q Consensus 14 ~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~---------~~~~~~~~ 84 (176)
..|+|+|.|+||||||.||+...+. .....+.|+|++......+..+..|.+.||+|.+... ......+.
T Consensus 4 ~~VAIVGRPNVGKSTLFNRL~g~r~-AIV~D~pGvTRDr~y~~~~~~~~~f~lIDTgGl~~~~~~~l~~~i~~Qa~~Ai~ 82 (444)
T COG1160 4 PVVAIVGRPNVGKSTLFNRLTGRRI-AIVSDTPGVTRDRIYGDAEWLGREFILIDTGGLDDGDEDELQELIREQALIAIE 82 (444)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCee-eEeecCCCCccCCccceeEEcCceEEEEECCCCCcCCchHHHHHHHHHHHHHHH
Confidence 5699999999999999999665554 3345567888888777666677779999999976432 22334567
Q ss_pred cccEEEEEEeCCChhhhhhHHHHHHHHhhhcCCCCEEEEEeCCCCCccccCHHHHHHHHHcC-CeEEEeccCCCCChHHH
Q 030504 85 HGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKN-LQYYEISAKSNYNFEKP 163 (176)
Q Consensus 85 ~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~~~~~~~~~~~~~~~~~-~~~~~~S~~~~~~v~~~ 163 (176)
.+|++++|+|....-+- ....+..+.. ..++|+++|+||+|-.. .++....+.++| -.++.+||..|.|+.++
T Consensus 83 eADvilfvVD~~~Git~--~D~~ia~~Lr-~~~kpviLvvNK~D~~~---~e~~~~efyslG~g~~~~ISA~Hg~Gi~dL 156 (444)
T COG1160 83 EADVILFVVDGREGITP--ADEEIAKILR-RSKKPVILVVNKIDNLK---AEELAYEFYSLGFGEPVPISAEHGRGIGDL 156 (444)
T ss_pred hCCEEEEEEeCCCCCCH--HHHHHHHHHH-hcCCCEEEEEEcccCch---hhhhHHHHHhcCCCCceEeehhhccCHHHH
Confidence 89999999999875322 2222222222 23799999999999862 122233334455 47999999999999999
Q ss_pred HHHHHHHH
Q 030504 164 FLYLARKL 171 (176)
Q Consensus 164 ~~~l~~~i 171 (176)
++++++.+
T Consensus 157 ld~v~~~l 164 (444)
T COG1160 157 LDAVLELL 164 (444)
T ss_pred HHHHHhhc
Confidence 99999986
|
|
| >cd01884 EF_Tu EF-Tu subfamily | Back alignment and domain information |
|---|
Probab=99.85 E-value=3.4e-20 Score=123.67 Aligned_cols=147 Identities=16% Similarity=0.089 Sum_probs=99.7
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHhcCCC-----C---------CccccceeEEEeEEEEEecCcEEEEEEEeCCCcccccc
Q 030504 12 PSFKLVIVGDGGTGKTTFVKRHLTGEF-----E---------KKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGG 77 (176)
Q Consensus 12 ~~~~i~i~G~~~~GKttl~~~~~~~~~-----~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~ 77 (176)
++++|+++|+.++|||||+++++.... . .......|.+.......++.....+.++||||+..+..
T Consensus 1 ~~~ni~iiGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~~~~ 80 (195)
T cd01884 1 PHVNVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITINTAHVEYETANRHYAHVDCPGHADYIK 80 (195)
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHHHhcccccccccccccCChhhhhcCccEEeeeeEecCCCeEEEEEECcCHHHHHH
Confidence 468999999999999999999875310 0 00111345566655556666677889999999988776
Q ss_pred ccccccccccEEEEEEeCCChhhhhhHHHHHHHHhhhcCCCC-EEEEEeCCCCCcccc-----CHHHHHHHHHc-----C
Q 030504 78 LRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIP-IVLCGNKVDVKNRQV-----KAKQVTFHRKK-----N 146 (176)
Q Consensus 78 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p-~liv~nK~Dl~~~~~-----~~~~~~~~~~~-----~ 146 (176)
.....+..+|++++|+|+.....-+.. ..+..+... +.| +++++||.|+..... ..+...+.... +
T Consensus 81 ~~~~~~~~~D~~ilVvda~~g~~~~~~-~~~~~~~~~--~~~~iIvviNK~D~~~~~~~~~~~~~~i~~~l~~~g~~~~~ 157 (195)
T cd01884 81 NMITGAAQMDGAILVVSATDGPMPQTR-EHLLLARQV--GVPYIVVFLNKADMVDDEELLELVEMEVRELLSKYGFDGDN 157 (195)
T ss_pred HHHHHhhhCCEEEEEEECCCCCcHHHH-HHHHHHHHc--CCCcEEEEEeCCCCCCcHHHHHHHHHHHHHHHHHhcccccC
Confidence 667777899999999999875432222 223333333 666 778899999863221 12233444443 3
Q ss_pred CeEEEeccCCCCChH
Q 030504 147 LQYYEISAKSNYNFE 161 (176)
Q Consensus 147 ~~~~~~S~~~~~~v~ 161 (176)
++++.+||++|.|..
T Consensus 158 v~iipiSa~~g~n~~ 172 (195)
T cd01884 158 TPIVRGSALKALEGD 172 (195)
T ss_pred CeEEEeeCccccCCC
Confidence 689999999999853
|
This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation. |
| >KOG0077 consensus Vesicle coat complex COPII, GTPase subunit SAR1 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.2e-21 Score=121.20 Aligned_cols=155 Identities=17% Similarity=0.277 Sum_probs=122.2
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccccccccccEEEE
Q 030504 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAII 91 (176)
Q Consensus 12 ~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~ 91 (176)
+.-|++++|..++|||||++.+...+. ..+.||...+.....+ .+.+|+.+|.+||...+..|..|+..+|++++
T Consensus 19 K~gKllFlGLDNAGKTTLLHMLKdDrl-~qhvPTlHPTSE~l~I----g~m~ftt~DLGGH~qArr~wkdyf~~v~~iv~ 93 (193)
T KOG0077|consen 19 KFGKLLFLGLDNAGKTTLLHMLKDDRL-GQHVPTLHPTSEELSI----GGMTFTTFDLGGHLQARRVWKDYFPQVDAIVY 93 (193)
T ss_pred cCceEEEEeecCCchhhHHHHHccccc-cccCCCcCCChHHhee----cCceEEEEccccHHHHHHHHHHHHhhhceeEe
Confidence 456899999999999999998655554 3445666555554444 67889999999999999999999999999999
Q ss_pred EEeCCChhhhhhHHHHHHHHhhh--cCCCCEEEEEeCCCCCccccCHHHHHH------HHHcC-----------CeEEEe
Q 030504 92 MFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVTF------HRKKN-----------LQYYEI 152 (176)
Q Consensus 92 v~d~~~~~s~~~~~~~~~~~~~~--~~~~p~liv~nK~Dl~~~~~~~~~~~~------~~~~~-----------~~~~~~ 152 (176)
.+|+.|.+.+.+.+..++.+... ..+.|+++.+||.|.+......+.... ....+ ...|.|
T Consensus 94 lvda~d~er~~es~~eld~ll~~e~la~vp~lilgnKId~p~a~se~~l~~~l~l~~~t~~~~~v~~~~~~~rp~evfmc 173 (193)
T KOG0077|consen 94 LVDAYDQERFAESKKELDALLSDESLATVPFLILGNKIDIPYAASEDELRFHLGLSNFTTGKGKVNLTDSNVRPLEVFMC 173 (193)
T ss_pred eeehhhHHHhHHHHHHHHHHHhHHHHhcCcceeecccccCCCcccHHHHHHHHHHHHHhcccccccccCCCCCeEEEEEE
Confidence 99999999999888777766544 369999999999999987655443311 11111 247889
Q ss_pred ccCCCCChHHHHHHHHHHH
Q 030504 153 SAKSNYNFEKPFLYLARKL 171 (176)
Q Consensus 153 S~~~~~~v~~~~~~l~~~i 171 (176)
|...+.|..+.|.|+.+.+
T Consensus 174 si~~~~gy~e~fkwl~qyi 192 (193)
T KOG0077|consen 174 SIVRKMGYGEGFKWLSQYI 192 (193)
T ss_pred EEEccCccceeeeehhhhc
Confidence 9999999999999987754
|
|
| >PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.5e-20 Score=117.16 Aligned_cols=134 Identities=19% Similarity=0.269 Sum_probs=89.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCcc----ccccccccccccccEEE
Q 030504 15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE----KFGGLRDGYYIHGQCAI 90 (176)
Q Consensus 15 ~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~----~~~~~~~~~~~~~~~~i 90 (176)
||+++|+.|+|||||++++.+... .+..|..+.+. =.++||||-- .+..-.......+|.++
T Consensus 3 rimliG~~g~GKTTL~q~L~~~~~--~~~KTq~i~~~------------~~~IDTPGEyiE~~~~y~aLi~ta~dad~V~ 68 (143)
T PF10662_consen 3 RIMLIGPSGSGKTTLAQALNGEEI--RYKKTQAIEYY------------DNTIDTPGEYIENPRFYHALIVTAQDADVVL 68 (143)
T ss_pred eEEEECCCCCCHHHHHHHHcCCCC--CcCccceeEec------------ccEEECChhheeCHHHHHHHHHHHhhCCEEE
Confidence 799999999999999999555443 23333322211 1357999931 11222222345899999
Q ss_pred EEEeCCChhhhhhHHHHHHHHhhhcCCCCEEEEEeCCCCCc-cccCHHHHHHHHHcCC-eEEEeccCCCCChHHHHHHHH
Q 030504 91 IMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKN-RQVKAKQVTFHRKKNL-QYYEISAKSNYNFEKPFLYLA 168 (176)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~~-~~~~~~~~~~~~~~~~-~~~~~S~~~~~~v~~~~~~l~ 168 (176)
+|.|++++.+.-.- .+...+ ++|++-|+||+|+.. ....+...++.+.-|+ .+|++|+.+|+|++++.++|-
T Consensus 69 ll~dat~~~~~~pP-----~fa~~f-~~pvIGVITK~Dl~~~~~~i~~a~~~L~~aG~~~if~vS~~~~eGi~eL~~~L~ 142 (143)
T PF10662_consen 69 LLQDATEPRSVFPP-----GFASMF-NKPVIGVITKIDLPSDDANIERAKKWLKNAGVKEIFEVSAVTGEGIEELKDYLE 142 (143)
T ss_pred EEecCCCCCccCCc-----hhhccc-CCCEEEEEECccCccchhhHHHHHHHHHHcCCCCeEEEECCCCcCHHHHHHHHh
Confidence 99999987532111 111222 789999999999983 3333445566666676 579999999999999999873
|
Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process |
| >cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins | Back alignment and domain information |
|---|
Probab=99.85 E-value=3.9e-20 Score=126.75 Aligned_cols=150 Identities=15% Similarity=0.060 Sum_probs=95.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCcccccc-------cccccccccc
Q 030504 15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGG-------LRDGYYIHGQ 87 (176)
Q Consensus 15 ~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~-------~~~~~~~~~~ 87 (176)
+|+++|.+|+|||||++++.+....... ..+.+...........+..+++||+||...... .....++++|
T Consensus 2 ~v~lvG~~~~GKStLl~~Ltg~~~~v~~--~~~tT~~~~~g~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~~~~ad 79 (233)
T cd01896 2 RVALVGFPSVGKSTLLSKLTNTKSEVAA--YEFTTLTCVPGVLEYKGAKIQLLDLPGIIEGAADGKGRGRQVIAVARTAD 79 (233)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccccC--CCCccccceEEEEEECCeEEEEEECCCcccccccchhHHHHHHHhhccCC
Confidence 7899999999999999997755422111 111122222222222456789999999754321 2234678999
Q ss_pred EEEEEEeCCChh-hhhhHHHHHHH----------------------------------------Hh--------------
Q 030504 88 CAIIMFDVTARL-TYKNVPTWHRD----------------------------------------LC-------------- 112 (176)
Q Consensus 88 ~~i~v~d~~~~~-s~~~~~~~~~~----------------------------------------~~-------------- 112 (176)
++++|+|++++. ..+.+...++. +.
T Consensus 80 ~il~V~D~t~~~~~~~~~~~~l~~~gi~l~~~~~~v~~~~~~~ggi~~~~~~~~~~~~~~~v~~~l~~~~i~~~~v~~~~ 159 (233)
T cd01896 80 LILMVLDATKPEGHREILERELEGVGIRLNKRPPNITIKKKKKGGINITSTVPLTKLDEKTIKAILREYKIHNADVLIRE 159 (233)
T ss_pred EEEEEecCCcchhHHHHHHHHHHHcCceecCCCCeEEEEEEecCCEEEeccCCCCCCCHHHHHHHHHHhCeeeEEEEEcc
Confidence 999999998764 33323222211 00
Q ss_pred ------------hhcCCCCEEEEEeCCCCCccccCHHHHHHHHHcCCeEEEeccCCCCChHHHHHHHHHHH
Q 030504 113 ------------RVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171 (176)
Q Consensus 113 ------------~~~~~~p~liv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l~~~i 171 (176)
....-.|+++|+||+|+.... +...+++ ...++++||+++.|++++|+.+.+.+
T Consensus 160 ~~~~~~~~~~~~~~~~y~p~iiV~NK~Dl~~~~---~~~~~~~--~~~~~~~SA~~g~gi~~l~~~i~~~L 225 (233)
T cd01896 160 DITVDDLIDVIEGNRVYIPCLYVYNKIDLISIE---ELDLLAR--QPNSVVISAEKGLNLDELKERIWDKL 225 (233)
T ss_pred CCCHHHHHHHHhCCceEeeEEEEEECccCCCHH---HHHHHhc--CCCEEEEcCCCCCCHHHHHHHHHHHh
Confidence 000125899999999986432 2223333 34689999999999999999998865
|
GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding. |
| >cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily | Back alignment and domain information |
|---|
Probab=99.85 E-value=9.5e-21 Score=128.94 Aligned_cols=146 Identities=21% Similarity=0.180 Sum_probs=96.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhc--CCCC---------------------------CccccceeEEEeEEEEEecCcEEEEE
Q 030504 15 KLVIVGDGGTGKTTFVKRHLT--GEFE---------------------------KKYEPTIGVEVHPLDFFTNCGKIRFY 65 (176)
Q Consensus 15 ~i~i~G~~~~GKttl~~~~~~--~~~~---------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~ 65 (176)
+|+++|+.++|||||+.+++. |... .......|++.......+......+.
T Consensus 1 nv~i~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~~~~~~~~~~~~i~ 80 (219)
T cd01883 1 NLVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKFETEKYRFT 80 (219)
T ss_pred CEEEecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeecceEEEeeCCeEEE
Confidence 589999999999999999763 2110 00111235566666666666778899
Q ss_pred EEeCCCccccccccccccccccEEEEEEeCCChh-------hhhhHHHHHHHHhhhcCCCCEEEEEeCCCCCccc-----
Q 030504 66 CWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARL-------TYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQ----- 133 (176)
Q Consensus 66 ~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~-------s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~~~~----- 133 (176)
+|||||+..+...+...+..+|++++|+|++++. ..+....+ ... .....+|+++++||.|+....
T Consensus 81 liDtpG~~~~~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~iiivvNK~Dl~~~~~~~~~ 158 (219)
T cd01883 81 ILDAPGHRDFVPNMITGASQADVAVLVVDARKGEFEAGFEKGGQTREHA-LLA-RTLGVKQLIVAVNKMDDVTVNWSEER 158 (219)
T ss_pred EEECCChHHHHHHHHHHhhhCCEEEEEEECCCCccccccccccchHHHH-HHH-HHcCCCeEEEEEEccccccccccHHH
Confidence 9999999877666666678899999999999852 11222222 222 222347899999999997321
Q ss_pred ---cCHHHHHHHHHc-----CCeEEEeccCCCCChHH
Q 030504 134 ---VKAKQVTFHRKK-----NLQYYEISAKSNYNFEK 162 (176)
Q Consensus 134 ---~~~~~~~~~~~~-----~~~~~~~S~~~~~~v~~ 162 (176)
...+....+... .++++++||++|.|+++
T Consensus 159 ~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~tg~gi~~ 195 (219)
T cd01883 159 YDEIKKELSPFLKKVGYNPKDVPFIPISGLTGDNLIE 195 (219)
T ss_pred HHHHHHHHHHHHHHcCCCcCCceEEEeecCcCCCCCc
Confidence 111122233443 36799999999999873
|
EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in |
| >COG1160 Predicted GTPases [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.1e-19 Score=131.01 Aligned_cols=156 Identities=18% Similarity=0.212 Sum_probs=114.2
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccc-----------cc
Q 030504 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGL-----------RD 80 (176)
Q Consensus 12 ~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~-----------~~ 80 (176)
..+||+|+|.|++|||||+|+ +.|+......+..|++++.+....+.....+.++||+|..+-... ..
T Consensus 177 ~~ikiaiiGrPNvGKSsLiN~-ilgeeR~Iv~~~aGTTRD~I~~~~e~~~~~~~liDTAGiRrk~ki~e~~E~~Sv~rt~ 255 (444)
T COG1160 177 DPIKIAIIGRPNVGKSSLINA-ILGEERVIVSDIAGTTRDSIDIEFERDGRKYVLIDTAGIRRKGKITESVEKYSVARTL 255 (444)
T ss_pred CceEEEEEeCCCCCchHHHHH-hccCceEEecCCCCccccceeeeEEECCeEEEEEECCCCCcccccccceEEEeehhhH
Confidence 469999999999999999999 556666666778889999998888777778899999995432221 22
Q ss_pred cccccccEEEEEEeCCChhhhhhHHHHHHHHhhhcCCCCEEEEEeCCCCCccc-c-CHHHH-HHHHH----cCCeEEEec
Q 030504 81 GYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQ-V-KAKQV-TFHRK----KNLQYYEIS 153 (176)
Q Consensus 81 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~~~~-~-~~~~~-~~~~~----~~~~~~~~S 153 (176)
..+..++++++|+|++.+-+-+... ....+.+. +++++++.||+|+.... . ..+.. ++-+. ...+.+.+|
T Consensus 256 ~aI~~a~vvllviDa~~~~~~qD~~-ia~~i~~~--g~~~vIvvNKWDl~~~~~~~~~~~k~~i~~~l~~l~~a~i~~iS 332 (444)
T COG1160 256 KAIERADVVLLVIDATEGISEQDLR-IAGLIEEA--GRGIVIVVNKWDLVEEDEATMEEFKKKLRRKLPFLDFAPIVFIS 332 (444)
T ss_pred hHHhhcCEEEEEEECCCCchHHHHH-HHHHHHHc--CCCeEEEEEccccCCchhhHHHHHHHHHHHHhccccCCeEEEEE
Confidence 2366799999999999886554442 12223333 89999999999987642 1 11111 11111 246899999
Q ss_pred cCCCCChHHHHHHHHHHH
Q 030504 154 AKSNYNFEKPFLYLARKL 171 (176)
Q Consensus 154 ~~~~~~v~~~~~~l~~~i 171 (176)
|+++.|+.++|+.+.+..
T Consensus 333 A~~~~~i~~l~~~i~~~~ 350 (444)
T COG1160 333 ALTGQGLDKLFEAIKEIY 350 (444)
T ss_pred ecCCCChHHHHHHHHHHH
Confidence 999999999999987754
|
|
| >PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.1e-19 Score=139.10 Aligned_cols=153 Identities=12% Similarity=0.045 Sum_probs=102.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhc---CCCCCccccceeEEEeEEEEEe-cCcEEEEEEEeCCCccccccccccccccccEEE
Q 030504 15 KLVIVGDGGTGKTTFVKRHLT---GEFEKKYEPTIGVEVHPLDFFT-NCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (176)
Q Consensus 15 ~i~i~G~~~~GKttl~~~~~~---~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 90 (176)
-|+++|+.++|||||++++.+ .++.++.. .|++........ ...+..+.+|||||++.+.......+.++|+++
T Consensus 2 ii~~~GhvdhGKTtLi~aLtg~~~dr~~eE~~--rGiTI~l~~~~~~~~~g~~i~~IDtPGhe~fi~~m~~g~~~~D~~l 79 (614)
T PRK10512 2 IIATAGHVDHGKTTLLQAITGVNADRLPEEKK--RGMTIDLGYAYWPQPDGRVLGFIDVPGHEKFLSNMLAGVGGIDHAL 79 (614)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCccchhccc--CCceEEeeeEEEecCCCcEEEEEECCCHHHHHHHHHHHhhcCCEEE
Confidence 478999999999999999763 22222222 233333322222 112345899999999998777777788999999
Q ss_pred EEEeCCChhhhhhHHHHHHHHhhhcCCCC-EEEEEeCCCCCcccc----CHHHHHHHHHcC---CeEEEeccCCCCChHH
Q 030504 91 IMFDVTARLTYKNVPTWHRDLCRVCENIP-IVLCGNKVDVKNRQV----KAKQVTFHRKKN---LQYYEISAKSNYNFEK 162 (176)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~p-~liv~nK~Dl~~~~~----~~~~~~~~~~~~---~~~~~~S~~~~~~v~~ 162 (176)
+|+|+++...-+.... +..+... +.| +++|+||+|+.+... ..+..+++...+ .+++++|+++|+|+++
T Consensus 80 LVVda~eg~~~qT~eh-l~il~~l--gi~~iIVVlNKiDlv~~~~~~~v~~ei~~~l~~~~~~~~~ii~VSA~tG~gI~~ 156 (614)
T PRK10512 80 LVVACDDGVMAQTREH-LAILQLT--GNPMLTVALTKADRVDEARIAEVRRQVKAVLREYGFAEAKLFVTAATEGRGIDA 156 (614)
T ss_pred EEEECCCCCcHHHHHH-HHHHHHc--CCCeEEEEEECCccCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEeCCCCCCCHH
Confidence 9999987533222222 2222222 556 579999999975322 122334444443 6899999999999999
Q ss_pred HHHHHHHHHh
Q 030504 163 PFLYLARKLA 172 (176)
Q Consensus 163 ~~~~l~~~i~ 172 (176)
++++|.....
T Consensus 157 L~~~L~~~~~ 166 (614)
T PRK10512 157 LREHLLQLPE 166 (614)
T ss_pred HHHHHHHhhc
Confidence 9999987544
|
|
| >cd04167 Snu114p Snu114p subfamily | Back alignment and domain information |
|---|
Probab=99.84 E-value=4.4e-20 Score=125.29 Aligned_cols=154 Identities=18% Similarity=0.160 Sum_probs=100.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCc-----------------cccceeEEEeEEEEEe-----cCcEEEEEEEeCCCc
Q 030504 15 KLVIVGDGGTGKTTFVKRHLTGEFEKK-----------------YEPTIGVEVHPLDFFT-----NCGKIRFYCWDTAGQ 72 (176)
Q Consensus 15 ~i~i~G~~~~GKttl~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~-----~~~~~~~~~~D~~g~ 72 (176)
+|+++|+.++|||||+++++....... .....|.+........ ++..+.+.+|||||+
T Consensus 2 nv~iiG~~~~GKTtL~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~giti~~~~~~~~~~~~~~~~~~i~iiDtpG~ 81 (213)
T cd04167 2 NVAIAGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPDSKGKSYLFNIIDTPGH 81 (213)
T ss_pred cEEEEcCCCCCHHHHHHHHHHhcCCCcccccccCCceeECCCCHHHHHcCccccccceeEEEEcCCCCEEEEEEEECCCC
Confidence 799999999999999999876432211 0111233332222221 345788999999999
Q ss_pred cccccccccccccccEEEEEEeCCChhhhhhHHHHHHHHhhhcCCCCEEEEEeCCCCCcc-------cc-------CHHH
Q 030504 73 EKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNR-------QV-------KAKQ 138 (176)
Q Consensus 73 ~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~~~-------~~-------~~~~ 138 (176)
+.+......++..+|++++|+|+++..+... ..++..... .+.|+++|+||+|+... .. ..+.
T Consensus 82 ~~f~~~~~~~~~~aD~~llVvD~~~~~~~~~-~~~~~~~~~--~~~p~iiviNK~D~~~~~~~l~~~~~~~~l~~~i~~~ 158 (213)
T cd04167 82 VNFMDEVAAALRLSDGVVLVVDVVEGVTSNT-ERLIRHAIL--EGLPIVLVINKIDRLILELKLPPNDAYFKLRHIIDEV 158 (213)
T ss_pred cchHHHHHHHHHhCCEEEEEEECCCCCCHHH-HHHHHHHHH--cCCCEEEEEECcccCcccccCCHHHHHHHHHHHHHHH
Confidence 9988778888899999999999987665432 233333332 36899999999997521 10 1112
Q ss_pred HHHHHHcCC-------e----EEEeccCCCCChH--------HHHHHHHHHH
Q 030504 139 VTFHRKKNL-------Q----YYEISAKSNYNFE--------KPFLYLARKL 171 (176)
Q Consensus 139 ~~~~~~~~~-------~----~~~~S~~~~~~v~--------~~~~~l~~~i 171 (176)
...+...+. + +++.|++.+.++. ++++.|...+
T Consensus 159 n~~~~~~~~~~~~~~~p~~~nv~~~s~~~~w~~~~~~~~~~~~~~~~~~~~~ 210 (213)
T cd04167 159 NNIIASFSTTLSFLFSPENGNVCFASSKFGFCFTLESFAKKYGLVDSIVSNI 210 (213)
T ss_pred HHHHHHhcCCCceEeccCCCeEEEEecCCCeEEecHHHHhhhhHHHHHHhhC
Confidence 233333322 2 6789999998876 6666666554
|
Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs. |
| >KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.84 E-value=9e-20 Score=124.94 Aligned_cols=164 Identities=15% Similarity=0.195 Sum_probs=110.7
Q ss_pred CCCCeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCcccc------------c
Q 030504 9 VDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKF------------G 76 (176)
Q Consensus 9 ~~~~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~------------~ 76 (176)
......+|+++|.|++|||||.|.+++.+... .+....++.......+......+.++||||.-.- -
T Consensus 68 e~~k~L~vavIG~PNvGKStLtN~mig~kv~~-vS~K~~TTr~~ilgi~ts~eTQlvf~DTPGlvs~~~~r~~~l~~s~l 146 (379)
T KOG1423|consen 68 EAQKSLYVAVIGAPNVGKSTLTNQMIGQKVSA-VSRKVHTTRHRILGIITSGETQLVFYDTPGLVSKKMHRRHHLMMSVL 146 (379)
T ss_pred hcceEEEEEEEcCCCcchhhhhhHhhCCcccc-ccccccceeeeeeEEEecCceEEEEecCCcccccchhhhHHHHHHhh
Confidence 34578899999999999999999977665543 3445556777777777777788999999994211 1
Q ss_pred cccccccccccEEEEEEeCCChhhhhhHHHHHHHHhhhcCCCCEEEEEeCCCCCccc-c-------------CHHHHHHH
Q 030504 77 GLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQ-V-------------KAKQVTFH 142 (176)
Q Consensus 77 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~~~~-~-------------~~~~~~~~ 142 (176)
...+..+..+|.+++|+|+++....-.- ......+...+.|-++|+||.|..... . .....++.
T Consensus 147 q~~~~a~q~AD~vvVv~Das~tr~~l~p--~vl~~l~~ys~ips~lvmnkid~~k~k~~Ll~l~~~Lt~g~l~~~kl~v~ 224 (379)
T KOG1423|consen 147 QNPRDAAQNADCVVVVVDASATRTPLHP--RVLHMLEEYSKIPSILVMNKIDKLKQKRLLLNLKDLLTNGELAKLKLEVQ 224 (379)
T ss_pred hCHHHHHhhCCEEEEEEeccCCcCccCh--HHHHHHHHHhcCCceeeccchhcchhhhHHhhhHHhccccccchhhhhHH
Confidence 1223345689999999999974322211 112223333588999999999976421 0 00011111
Q ss_pred HH-------------cCC----eEEEeccCCCCChHHHHHHHHHHHhcCC
Q 030504 143 RK-------------KNL----QYYEISAKSNYNFEKPFLYLARKLAGST 175 (176)
Q Consensus 143 ~~-------------~~~----~~~~~S~~~~~~v~~~~~~l~~~i~~~~ 175 (176)
.+ .|+ .+|.+||++|+|++++-+||..+....|
T Consensus 225 ~~f~~~p~~~~~~~~~gwshfe~vF~vSaL~G~GikdlkqyLmsqa~~gp 274 (379)
T KOG1423|consen 225 EKFTDVPSDEKWRTICGWSHFERVFMVSALYGEGIKDLKQYLMSQAPPGP 274 (379)
T ss_pred HHhccCCcccccccccCcccceeEEEEecccccCHHHHHHHHHhcCCCCC
Confidence 11 223 3899999999999999999998876543
|
|
| >cd04165 GTPBP1_like GTPBP1-like | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.2e-19 Score=123.37 Aligned_cols=152 Identities=14% Similarity=0.168 Sum_probs=96.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCcccc-----------------------ceeEEEeEEE-------------EEec
Q 030504 15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEP-----------------------TIGVEVHPLD-------------FFTN 58 (176)
Q Consensus 15 ~i~i~G~~~~GKttl~~~~~~~~~~~~~~~-----------------------~~~~~~~~~~-------------~~~~ 58 (176)
||+++|+.++|||||+.+|..+.+...... ..|++..... ...+
T Consensus 1 ~v~~~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~E~~~g~t~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 80 (224)
T cd04165 1 RVAVVGNVDAGKSTLLGVLTQGELDNGRGKARLNLFRHKHEVESGRTSSVSNEILGFDSDGEVVNYPDNHLSESDIEICE 80 (224)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCcCCCCCeEEeehhhhhhhhhcCchhhhhhhhcccCCCCceecCCCCccccccceeee
Confidence 689999999999999999987665432110 0111111000 0112
Q ss_pred CcEEEEEEEeCCCcccccccccccc--ccccEEEEEEeCCChhhhhhHHHHHHHHhhhcCCCCEEEEEeCCCCCccccCH
Q 030504 59 CGKIRFYCWDTAGQEKFGGLRDGYY--IHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKA 136 (176)
Q Consensus 59 ~~~~~~~~~D~~g~~~~~~~~~~~~--~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~~~~~~~ 136 (176)
..+..+.+.||||++++.......+ ..+|++++|+|+..+..-+ ...++..+... +.|+++|+||+|+.++....
T Consensus 81 ~~~~~i~liDtpG~~~~~~~~~~~~~~~~~D~~llVvda~~g~~~~-d~~~l~~l~~~--~ip~ivvvNK~D~~~~~~~~ 157 (224)
T cd04165 81 KSSKLVTFIDLAGHERYLKTTLFGLTGYAPDYAMLVVAANAGIIGM-TKEHLGLALAL--NIPVFVVVTKIDLAPANILQ 157 (224)
T ss_pred eCCcEEEEEECCCcHHHHHHHHHhhcccCCCEEEEEEECCCCCcHH-HHHHHHHHHHc--CCCEEEEEECccccCHHHHH
Confidence 2345788999999998865444334 3689999999988754322 22333344443 78999999999986533222
Q ss_pred HH----HHHHHH--------------------------cCCeEEEeccCCCCChHHHHHHHHH
Q 030504 137 KQ----VTFHRK--------------------------KNLQYYEISAKSNYNFEKPFLYLAR 169 (176)
Q Consensus 137 ~~----~~~~~~--------------------------~~~~~~~~S~~~~~~v~~~~~~l~~ 169 (176)
+. .+..+. ...++|.+|+.+|+|++++.+.|..
T Consensus 158 ~~~~~l~~~L~~~g~~~~p~~~~~~~~~~~~~~~~~~~~~~pi~~vSavtg~Gi~~L~~~L~~ 220 (224)
T cd04165 158 ETLKDLKRILKVPGVRKLPVPVKSDDDVVLAASNFSSERIVPIFQVSNVTGEGLDLLHAFLNL 220 (224)
T ss_pred HHHHHHHHHhcCCCccccceeeecccceeehhhcCCccccCcEEEeeCCCccCHHHHHHHHHh
Confidence 11 122221 1248999999999999999887753
|
Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and |
| >PRK12736 elongation factor Tu; Reviewed | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.3e-19 Score=132.98 Aligned_cols=161 Identities=15% Similarity=0.082 Sum_probs=110.1
Q ss_pred CCCCeeEEEEEcCCCCcHHHHHHHHhcCCCC--------------CccccceeEEEeEEEEEecCcEEEEEEEeCCCccc
Q 030504 9 VDYPSFKLVIVGDGGTGKTTFVKRHLTGEFE--------------KKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK 74 (176)
Q Consensus 9 ~~~~~~~i~i~G~~~~GKttl~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~ 74 (176)
...++++|+++|+.++|||||+++++..... .......|.+.......++.....+.++||||+++
T Consensus 8 ~~k~~~ni~i~Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~~~~~~~~~~~~~~i~~iDtPGh~~ 87 (394)
T PRK12736 8 RSKPHVNIGTIGHVDHGKTTLTAAITKVLAERGLNQAKDYDSIDAAPEEKERGITINTAHVEYETEKRHYAHVDCPGHAD 87 (394)
T ss_pred cCCCeeEEEEEccCCCcHHHHHHHHHhhhhhhccccccchhhhcCCHHHHhcCccEEEEeeEecCCCcEEEEEECCCHHH
Confidence 4568899999999999999999998742110 01111345666666566655667789999999998
Q ss_pred cccccccccccccEEEEEEeCCChhhhhhHHHHHHHHhhhcCCCC-EEEEEeCCCCCcccc-----CHHHHHHHHHcC--
Q 030504 75 FGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIP-IVLCGNKVDVKNRQV-----KAKQVTFHRKKN-- 146 (176)
Q Consensus 75 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p-~liv~nK~Dl~~~~~-----~~~~~~~~~~~~-- 146 (176)
|.......+..+|++++|+|+.....-+... .+..+... +.| +++++||.|+.+... ..+...++...+
T Consensus 88 f~~~~~~~~~~~d~~llVvd~~~g~~~~t~~-~~~~~~~~--g~~~~IvviNK~D~~~~~~~~~~i~~~i~~~l~~~~~~ 164 (394)
T PRK12736 88 YVKNMITGAAQMDGAILVVAATDGPMPQTRE-HILLARQV--GVPYLVVFLNKVDLVDDEELLELVEMEVRELLSEYDFP 164 (394)
T ss_pred HHHHHHHHHhhCCEEEEEEECCCCCchhHHH-HHHHHHHc--CCCEEEEEEEecCCcchHHHHHHHHHHHHHHHHHhCCC
Confidence 8766666677899999999998753333222 22233333 778 678899999874221 122334444444
Q ss_pred ---CeEEEeccCCCC--------ChHHHHHHHHHHHh
Q 030504 147 ---LQYYEISAKSNY--------NFEKPFLYLARKLA 172 (176)
Q Consensus 147 ---~~~~~~S~~~~~--------~v~~~~~~l~~~i~ 172 (176)
++++.+||++|. ++.++++.+.+.+.
T Consensus 165 ~~~~~ii~vSa~~g~~~~~~~~~~i~~Ll~~l~~~lp 201 (394)
T PRK12736 165 GDDIPVIRGSALKALEGDPKWEDAIMELMDAVDEYIP 201 (394)
T ss_pred cCCccEEEeeccccccCCCcchhhHHHHHHHHHHhCC
Confidence 579999999983 57888888877654
|
|
| >PRK04004 translation initiation factor IF-2; Validated | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.9e-19 Score=137.21 Aligned_cols=154 Identities=23% Similarity=0.274 Sum_probs=99.3
Q ss_pred CCCeeEEEEEcCCCCcHHHHHHHHhcCCCCC----ccccceeEEEeEEEEEe--cCcE-----E-----EEEEEeCCCcc
Q 030504 10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEK----KYEPTIGVEVHPLDFFT--NCGK-----I-----RFYCWDTAGQE 73 (176)
Q Consensus 10 ~~~~~~i~i~G~~~~GKttl~~~~~~~~~~~----~~~~~~~~~~~~~~~~~--~~~~-----~-----~~~~~D~~g~~ 73 (176)
..++-.|+++|++++|||||++++.+..... ....+.|.+........ .+.. . .+.+|||||++
T Consensus 3 ~~R~p~V~i~Gh~~~GKTSLl~~l~~~~v~~~~~g~itq~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iDTPG~e 82 (586)
T PRK04004 3 KLRQPIVVVLGHVDHGKTTLLDKIRGTAVAAKEAGGITQHIGATEVPIDVIEKIAGPLKKPLPIKLKIPGLLFIDTPGHE 82 (586)
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHhCcccccCCCCceEEeeceeeccccccccccceeccccccccccCCEEEEECCChH
Confidence 3455579999999999999999976433221 11223333322221100 0111 1 26899999999
Q ss_pred ccccccccccccccEEEEEEeCCCh---hhhhhHHHHHHHHhhhcCCCCEEEEEeCCCCCcccc----------------
Q 030504 74 KFGGLRDGYYIHGQCAIIMFDVTAR---LTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQV---------------- 134 (176)
Q Consensus 74 ~~~~~~~~~~~~~~~~i~v~d~~~~---~s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~~~~~---------------- 134 (176)
.|..++...+..+|++++|+|+++. .+++.+. .+.. .+.|+++++||+|+.....
T Consensus 83 ~f~~~~~~~~~~aD~~IlVvDa~~g~~~qt~e~i~----~~~~--~~vpiIvviNK~D~~~~~~~~~~~~~~e~~~~~~~ 156 (586)
T PRK04004 83 AFTNLRKRGGALADIAILVVDINEGFQPQTIEAIN----ILKR--RKTPFVVAANKIDRIPGWKSTEDAPFLESIEKQSQ 156 (586)
T ss_pred HHHHHHHHhHhhCCEEEEEEECCCCCCHhHHHHHH----HHHH--cCCCEEEEEECcCCchhhhhhcCchHHHHHhhhhH
Confidence 9988888888899999999999973 3333332 2222 3889999999999852100
Q ss_pred --CH-------HHHHHHHH---------------cCCeEEEeccCCCCChHHHHHHHHH
Q 030504 135 --KA-------KQVTFHRK---------------KNLQYYEISAKSNYNFEKPFLYLAR 169 (176)
Q Consensus 135 --~~-------~~~~~~~~---------------~~~~~~~~S~~~~~~v~~~~~~l~~ 169 (176)
.. +....... ..++++++||++|+|+++++..+..
T Consensus 157 ~v~~~f~~~l~ev~~~L~~~g~~~e~~~~~~~~~~~v~ivpiSA~tGeGi~dLl~~i~~ 215 (586)
T PRK04004 157 RVQQELEEKLYELIGQLSELGFSADRFDRVKDFTKTVAIVPVSAKTGEGIPDLLMVLAG 215 (586)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCChhhhhhhhccCCCceEeeccCCCCCChHHHHHHHHH
Confidence 00 00011111 1357999999999999999988764
|
|
| >PRK12735 elongation factor Tu; Reviewed | Back alignment and domain information |
|---|
Probab=99.83 E-value=2.2e-19 Score=131.82 Aligned_cols=160 Identities=13% Similarity=0.053 Sum_probs=108.1
Q ss_pred CCCCeeEEEEEcCCCCcHHHHHHHHhcC-----C--C-------CCccccceeEEEeEEEEEecCcEEEEEEEeCCCccc
Q 030504 9 VDYPSFKLVIVGDGGTGKTTFVKRHLTG-----E--F-------EKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK 74 (176)
Q Consensus 9 ~~~~~~~i~i~G~~~~GKttl~~~~~~~-----~--~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~ 74 (176)
...+.++|+++|++++|||||+++++.. . + ........|.+.......++.....+.++||||++.
T Consensus 8 ~~~~~~~i~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rGiT~~~~~~~~~~~~~~i~~iDtPGh~~ 87 (396)
T PRK12735 8 RTKPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGGEAKAYDQIDNAPEEKARGITINTSHVEYETANRHYAHVDCPGHAD 87 (396)
T ss_pred CCCCeEEEEEECcCCCCHHHHHHHHHHhhhhcCCcccchhhhccCChhHHhcCceEEEeeeEEcCCCcEEEEEECCCHHH
Confidence 4568899999999999999999998751 1 0 001112345666665555655666789999999988
Q ss_pred cccccccccccccEEEEEEeCCChhhhhhHHHHHHHHhhhcCCCCEE-EEEeCCCCCcccc-----CHHHHHHHHHcC--
Q 030504 75 FGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIV-LCGNKVDVKNRQV-----KAKQVTFHRKKN-- 146 (176)
Q Consensus 75 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~l-iv~nK~Dl~~~~~-----~~~~~~~~~~~~-- 146 (176)
|.......+..+|++++|+|+.+....+.. ..+..+... +.|.+ +++||+|+.+... ..+...++...+
T Consensus 88 f~~~~~~~~~~aD~~llVvda~~g~~~qt~-e~l~~~~~~--gi~~iivvvNK~Dl~~~~~~~~~~~~ei~~~l~~~~~~ 164 (396)
T PRK12735 88 YVKNMITGAAQMDGAILVVSAADGPMPQTR-EHILLARQV--GVPYIVVFLNKCDMVDDEELLELVEMEVRELLSKYDFP 164 (396)
T ss_pred HHHHHHhhhccCCEEEEEEECCCCCchhHH-HHHHHHHHc--CCCeEEEEEEecCCcchHHHHHHHHHHHHHHHHHcCCC
Confidence 766666667789999999999875432222 222333332 77865 5799999974221 112334444443
Q ss_pred ---CeEEEeccCCCC----------ChHHHHHHHHHHH
Q 030504 147 ---LQYYEISAKSNY----------NFEKPFLYLARKL 171 (176)
Q Consensus 147 ---~~~~~~S~~~~~----------~v~~~~~~l~~~i 171 (176)
++++++|++++. ++.++++.|...+
T Consensus 165 ~~~~~ii~~Sa~~g~n~~~~~~w~~~~~~Ll~~l~~~~ 202 (396)
T PRK12735 165 GDDTPIIRGSALKALEGDDDEEWEAKILELMDAVDSYI 202 (396)
T ss_pred cCceeEEecchhccccCCCCCcccccHHHHHHHHHhcC
Confidence 679999999984 5677777777654
|
|
| >TIGR00485 EF-Tu translation elongation factor TU | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.4e-19 Score=132.90 Aligned_cols=148 Identities=14% Similarity=0.071 Sum_probs=100.3
Q ss_pred CCCCCeeEEEEEcCCCCcHHHHHHHHhcC-----CCC---------CccccceeEEEeEEEEEecCcEEEEEEEeCCCcc
Q 030504 8 TVDYPSFKLVIVGDGGTGKTTFVKRHLTG-----EFE---------KKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73 (176)
Q Consensus 8 ~~~~~~~~i~i~G~~~~GKttl~~~~~~~-----~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~ 73 (176)
....+.++|+++|+.++|||||+++++.. +.. .......|.+.......++.....+.+|||||++
T Consensus 7 ~~~~~~~~i~i~Ghvd~GKStL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rG~Ti~~~~~~~~~~~~~~~liDtpGh~ 86 (394)
T TIGR00485 7 ERTKPHVNIGTIGHVDHGKTTLTAAITTVLAKEGGAAARAYDQIDNAPEEKARGITINTAHVEYETENRHYAHVDCPGHA 86 (394)
T ss_pred cCCCceEEEEEEeecCCCHHHHHHHHHhhHHHhhcccccccccccCCHHHHhcCcceeeEEEEEcCCCEEEEEEECCchH
Confidence 34678999999999999999999998632 100 0111124566666666666667788999999999
Q ss_pred ccccccccccccccEEEEEEeCCChhhhhhHHHHHHHHhhhcCCCCEE-EEEeCCCCCcccc-----CHHHHHHHHHcC-
Q 030504 74 KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIV-LCGNKVDVKNRQV-----KAKQVTFHRKKN- 146 (176)
Q Consensus 74 ~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~l-iv~nK~Dl~~~~~-----~~~~~~~~~~~~- 146 (176)
+|..........+|++++|+|+.++...+... .+..+... +.|.+ +++||+|+.+... ..+..++++..+
T Consensus 87 ~f~~~~~~~~~~~D~~ilVvda~~g~~~qt~e-~l~~~~~~--gi~~iIvvvNK~Dl~~~~~~~~~~~~~i~~~l~~~~~ 163 (394)
T TIGR00485 87 DYVKNMITGAAQMDGAILVVSATDGPMPQTRE-HILLARQV--GVPYIVVFLNKCDMVDDEELLELVEMEVRELLSEYDF 163 (394)
T ss_pred HHHHHHHHHHhhCCEEEEEEECCCCCcHHHHH-HHHHHHHc--CCCEEEEEEEecccCCHHHHHHHHHHHHHHHHHhcCC
Confidence 88665555567889999999998753333222 22233332 67755 6899999875321 123345555554
Q ss_pred ----CeEEEeccCCCC
Q 030504 147 ----LQYYEISAKSNY 158 (176)
Q Consensus 147 ----~~~~~~S~~~~~ 158 (176)
++++++|++++.
T Consensus 164 ~~~~~~ii~vSa~~g~ 179 (394)
T TIGR00485 164 PGDDTPIIRGSALKAL 179 (394)
T ss_pred CccCccEEECcccccc
Confidence 789999999875
|
This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation. |
| >cd04169 RF3 RF3 subfamily | Back alignment and domain information |
|---|
Probab=99.83 E-value=2.1e-19 Score=125.28 Aligned_cols=119 Identities=19% Similarity=0.233 Sum_probs=83.8
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhc--CCCCC---------------cccc---ceeEEEeEEEEEecCcEEEEEEEeCCCc
Q 030504 13 SFKLVIVGDGGTGKTTFVKRHLT--GEFEK---------------KYEP---TIGVEVHPLDFFTNCGKIRFYCWDTAGQ 72 (176)
Q Consensus 13 ~~~i~i~G~~~~GKttl~~~~~~--~~~~~---------------~~~~---~~~~~~~~~~~~~~~~~~~~~~~D~~g~ 72 (176)
..+|+++|++|+|||||+++++. |.... .+.+ ..+.+.......++..++.+.+|||||+
T Consensus 2 ~Rni~ivGh~~~GKTTL~e~ll~~~g~i~~~g~v~~~~~~~~t~~D~~~~e~~rg~si~~~~~~~~~~~~~i~liDTPG~ 81 (267)
T cd04169 2 RRTFAIISHPDAGKTTLTEKLLLFGGAIREAGAVKARKSRKHATSDWMEIEKQRGISVTSSVMQFEYRDCVINLLDTPGH 81 (267)
T ss_pred ccEEEEEcCCCCCHHHHHHHHHHhcCCcccCceecccccCCCccCCCcHHHHhCCCCeEEEEEEEeeCCEEEEEEECCCc
Confidence 36899999999999999999874 21110 0000 1234444555566777889999999999
Q ss_pred cccccccccccccccEEEEEEeCCChhhhhhHHHHHHHHhhhcCCCCEEEEEeCCCCCcccc
Q 030504 73 EKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQV 134 (176)
Q Consensus 73 ~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~~~~~ 134 (176)
.++.......++.+|++++|+|+++....+ ...++..... .+.|+++++||+|+.....
T Consensus 82 ~df~~~~~~~l~~aD~~IlVvda~~g~~~~-~~~i~~~~~~--~~~P~iivvNK~D~~~a~~ 140 (267)
T cd04169 82 EDFSEDTYRTLTAVDSAVMVIDAAKGVEPQ-TRKLFEVCRL--RGIPIITFINKLDREGRDP 140 (267)
T ss_pred hHHHHHHHHHHHHCCEEEEEEECCCCccHH-HHHHHHHHHh--cCCCEEEEEECCccCCCCH
Confidence 988776677788999999999998754322 2233333333 3889999999999876543
|
Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts. |
| >cd04168 TetM_like Tet(M)-like subfamily | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.6e-19 Score=123.93 Aligned_cols=129 Identities=19% Similarity=0.181 Sum_probs=89.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCC--------CC-----cc---ccceeEEEeEEEEEecCcEEEEEEEeCCCccccccc
Q 030504 15 KLVIVGDGGTGKTTFVKRHLTGEF--------EK-----KY---EPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGL 78 (176)
Q Consensus 15 ~i~i~G~~~~GKttl~~~~~~~~~--------~~-----~~---~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~ 78 (176)
+|+++|+.|+|||||+++++...- .. .+ ....|.+.......+.....++.+|||||+..+...
T Consensus 1 ni~i~G~~~~GKTtL~~~ll~~~g~i~~~g~v~~~~~~~D~~~~e~~rg~ti~~~~~~~~~~~~~i~liDTPG~~~f~~~ 80 (237)
T cd04168 1 NIGILAHVDAGKTTLTESLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSAVASFQWEDTKVNLIDTPGHMDFIAE 80 (237)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCccccccccCCcccCCCchhHhhCCCceeeeeEEEEECCEEEEEEeCCCccchHHH
Confidence 689999999999999999875210 00 00 112344455555555667788999999999998888
Q ss_pred cccccccccEEEEEEeCCChhhhhhHHHHHHHHhhhcCCCCEEEEEeCCCCCccccCHHHHHHHHHcC
Q 030504 79 RDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKN 146 (176)
Q Consensus 79 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~~~~~~~~~~~~~~~~~ 146 (176)
+..+++.+|++++|+|+++.... ....++..+... +.|+++++||.|+.......-..++...++
T Consensus 81 ~~~~l~~aD~~IlVvd~~~g~~~-~~~~~~~~~~~~--~~P~iivvNK~D~~~a~~~~~~~~i~~~~~ 145 (237)
T cd04168 81 VERSLSVLDGAILVISAVEGVQA-QTRILWRLLRKL--NIPTIIFVNKIDRAGADLEKVYQEIKEKLS 145 (237)
T ss_pred HHHHHHHhCeEEEEEeCCCCCCH-HHHHHHHHHHHc--CCCEEEEEECccccCCCHHHHHHHHHHHHC
Confidence 88889999999999999986543 233444444443 899999999999986544332333333343
|
Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB. |
| >KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.82 E-value=4.9e-20 Score=135.45 Aligned_cols=163 Identities=17% Similarity=0.204 Sum_probs=123.2
Q ss_pred CCCCCeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCcccccccccccccccc
Q 030504 8 TVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQ 87 (176)
Q Consensus 8 ~~~~~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~ 87 (176)
...+..+||+++|..|+|||||+-.++...+.+...+-.. ...+...+....+...+.|++..+..+.....-++++|
T Consensus 4 ~~t~kdVRIvliGD~G~GKtSLImSL~~eef~~~VP~rl~--~i~IPadvtPe~vpt~ivD~ss~~~~~~~l~~EirkA~ 81 (625)
T KOG1707|consen 4 DETLKDVRIVLIGDEGVGKTSLIMSLLEEEFVDAVPRRLP--RILIPADVTPENVPTSIVDTSSDSDDRLCLRKEIRKAD 81 (625)
T ss_pred ccCccceEEEEECCCCccHHHHHHHHHhhhccccccccCC--ccccCCccCcCcCceEEEecccccchhHHHHHHHhhcC
Confidence 3456789999999999999999999999888776554331 22222334445566889999876655555566789999
Q ss_pred EEEEEEeCCChhhhhhHH-HHHHHHhhhc---CCCCEEEEEeCCCCCccccC--HH-HHHHHHHcC--CeEEEeccCCCC
Q 030504 88 CAIIMFDVTARLTYKNVP-TWHRDLCRVC---ENIPIVLCGNKVDVKNRQVK--AK-QVTFHRKKN--LQYYEISAKSNY 158 (176)
Q Consensus 88 ~~i~v~d~~~~~s~~~~~-~~~~~~~~~~---~~~p~liv~nK~Dl~~~~~~--~~-~~~~~~~~~--~~~~~~S~~~~~ 158 (176)
+++++|+++++++++.+. +|+..+.+.. .+.|+|+|+||+|+...... +. ...+..++. -.+++|||++..
T Consensus 82 vi~lvyavd~~~T~D~ist~WLPlir~~~~~~~~~PVILvGNK~d~~~~~~~s~e~~~~pim~~f~EiEtciecSA~~~~ 161 (625)
T KOG1707|consen 82 VICLVYAVDDESTVDRISTKWLPLIRQLFGDYHETPVILVGNKSDNGDNENNSDEVNTLPIMIAFAEIETCIECSALTLA 161 (625)
T ss_pred EEEEEEecCChHHhhhhhhhhhhhhhcccCCCccCCEEEEeeccCCccccccchhHHHHHHHHHhHHHHHHHhhhhhhhh
Confidence 999999999999999886 7999998887 68999999999998753332 22 223333322 257999999999
Q ss_pred ChHHHHHHHHHHHh
Q 030504 159 NFEKPFLYLARKLA 172 (176)
Q Consensus 159 ~v~~~~~~l~~~i~ 172 (176)
++.|+|...-+++.
T Consensus 162 n~~e~fYyaqKaVi 175 (625)
T KOG1707|consen 162 NVSELFYYAQKAVI 175 (625)
T ss_pred hhHhhhhhhhheee
Confidence 99999998777654
|
|
| >COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.82 E-value=4.2e-19 Score=133.38 Aligned_cols=156 Identities=15% Similarity=0.115 Sum_probs=117.5
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCcccc------cccccccc--
Q 030504 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKF------GGLRDGYY-- 83 (176)
Q Consensus 12 ~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~------~~~~~~~~-- 83 (176)
+..+|+++|.||+|||||.|++.+.+..- .-..|+|..+++.....++..+++.|+||.-.. +...+.++
T Consensus 2 ~~~~valvGNPNvGKTtlFN~LTG~~q~V--gNwpGvTVEkkeg~~~~~~~~i~ivDLPG~YSL~~~S~DE~Var~~ll~ 79 (653)
T COG0370 2 KKLTVALVGNPNVGKTTLFNALTGANQKV--GNWPGVTVEKKEGKLKYKGHEIEIVDLPGTYSLTAYSEDEKVARDFLLE 79 (653)
T ss_pred CcceEEEecCCCccHHHHHHHHhccCcee--cCCCCeeEEEEEEEEEecCceEEEEeCCCcCCCCCCCchHHHHHHHHhc
Confidence 34679999999999999999966544322 234577888888877777777999999994322 22333343
Q ss_pred ccccEEEEEEeCCChhhhhhHHHHHHHHhhhcCCCCEEEEEeCCCCCc-cccCHHHHHHHHHcCCeEEEeccCCCCChHH
Q 030504 84 IHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKN-RQVKAKQVTFHRKKNLQYYEISAKSNYNFEK 162 (176)
Q Consensus 84 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~ 162 (176)
...|+++-|+|+++.+.-- .+.-++.+. +.|++++.|+.|... +....+..++.+..|++++++||++|.|+++
T Consensus 80 ~~~D~ivnVvDAtnLeRnL---yltlQLlE~--g~p~ilaLNm~D~A~~~Gi~ID~~~L~~~LGvPVv~tvA~~g~G~~~ 154 (653)
T COG0370 80 GKPDLIVNVVDATNLERNL---YLTLQLLEL--GIPMILALNMIDEAKKRGIRIDIEKLSKLLGVPVVPTVAKRGEGLEE 154 (653)
T ss_pred CCCCEEEEEcccchHHHHH---HHHHHHHHc--CCCeEEEeccHhhHHhcCCcccHHHHHHHhCCCEEEEEeecCCCHHH
Confidence 3569999999999875221 222334444 999999999999875 5566778899999999999999999999999
Q ss_pred HHHHHHHHHhcC
Q 030504 163 PFLYLARKLAGS 174 (176)
Q Consensus 163 ~~~~l~~~i~~~ 174 (176)
+.+.+.+....+
T Consensus 155 l~~~i~~~~~~~ 166 (653)
T COG0370 155 LKRAIIELAESK 166 (653)
T ss_pred HHHHHHHhcccc
Confidence 999988755443
|
|
| >COG0218 Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.81 E-value=2.7e-18 Score=111.83 Aligned_cols=159 Identities=14% Similarity=0.111 Sum_probs=110.1
Q ss_pred CCCeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCc----------ccccccc
Q 030504 10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQ----------EKFGGLR 79 (176)
Q Consensus 10 ~~~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~----------~~~~~~~ 79 (176)
+....-|+++|.++||||||+|.+.+.+-....+.|.|.|...-.+..++. +.+.|.||. +......
T Consensus 21 ~~~~~EIaF~GRSNVGKSSlIN~l~~~k~LArtSktPGrTq~iNff~~~~~---~~lVDlPGYGyAkv~k~~~e~w~~~i 97 (200)
T COG0218 21 EDDLPEIAFAGRSNVGKSSLINALTNQKNLARTSKTPGRTQLINFFEVDDE---LRLVDLPGYGYAKVPKEVKEKWKKLI 97 (200)
T ss_pred CCCCcEEEEEccCcccHHHHHHHHhCCcceeecCCCCCccceeEEEEecCc---EEEEeCCCcccccCCHHHHHHHHHHH
Confidence 345567999999999999999998876644455667787777777766654 788999992 2233334
Q ss_pred ccccc---cccEEEEEEeCCChhhhhhHHHHHHHHhhhcCCCCEEEEEeCCCCCccccCHHHH-HHHHH----cCCe--E
Q 030504 80 DGYYI---HGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQV-TFHRK----KNLQ--Y 149 (176)
Q Consensus 80 ~~~~~---~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~~~~~~~~~~-~~~~~----~~~~--~ 149 (176)
..|++ +..++++++|+..+...... .+++.+.+. +.|+++++||+|........... ..++. ..+. +
T Consensus 98 ~~YL~~R~~L~~vvlliD~r~~~~~~D~-em~~~l~~~--~i~~~vv~tK~DKi~~~~~~k~l~~v~~~l~~~~~~~~~~ 174 (200)
T COG0218 98 EEYLEKRANLKGVVLLIDARHPPKDLDR-EMIEFLLEL--GIPVIVVLTKADKLKKSERNKQLNKVAEELKKPPPDDQWV 174 (200)
T ss_pred HHHHhhchhheEEEEEEECCCCCcHHHH-HHHHHHHHc--CCCeEEEEEccccCChhHHHHHHHHHHHHhcCCCCccceE
Confidence 44443 35788999998765433222 334444444 99999999999987755444322 22222 2233 8
Q ss_pred EEeccCCCCChHHHHHHHHHHHhcC
Q 030504 150 YEISAKSNYNFEKPFLYLARKLAGS 174 (176)
Q Consensus 150 ~~~S~~~~~~v~~~~~~l~~~i~~~ 174 (176)
+..|+.++.|++++...|.+.+.+.
T Consensus 175 ~~~ss~~k~Gi~~l~~~i~~~~~~~ 199 (200)
T COG0218 175 VLFSSLKKKGIDELKAKILEWLKEA 199 (200)
T ss_pred EEEecccccCHHHHHHHHHHHhhcc
Confidence 8899999999999999998887653
|
|
| >PRK00741 prfC peptide chain release factor 3; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=9.6e-19 Score=131.84 Aligned_cols=117 Identities=19% Similarity=0.200 Sum_probs=83.6
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHhc--CCCC---------------C---ccccceeEEEeEEEEEecCcEEEEEEEeCCC
Q 030504 12 PSFKLVIVGDGGTGKTTFVKRHLT--GEFE---------------K---KYEPTIGVEVHPLDFFTNCGKIRFYCWDTAG 71 (176)
Q Consensus 12 ~~~~i~i~G~~~~GKttl~~~~~~--~~~~---------------~---~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g 71 (176)
...+|+|+|++++|||||+++++. |... . ......|.+.......++...+.+.+|||||
T Consensus 9 ~~Rni~IiGh~daGKTTL~e~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rgiSi~~~~~~~~~~~~~inliDTPG 88 (526)
T PRK00741 9 KRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGISVTSSVMQFPYRDCLINLLDTPG 88 (526)
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHhCCCccccceeeccccCccccCCCcHHHHhhCCceeeeeEEEEECCEEEEEEECCC
Confidence 467999999999999999999863 2110 0 0011224445555555666778899999999
Q ss_pred ccccccccccccccccEEEEEEeCCChhhhhhHHHHHHHHhhhcCCCCEEEEEeCCCCCc
Q 030504 72 QEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKN 131 (176)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~~ 131 (176)
++.+.......++.+|++++|+|+++.... ....++..... .+.|+++++||+|+..
T Consensus 89 ~~df~~~~~~~l~~aD~aIlVvDa~~gv~~-~t~~l~~~~~~--~~iPiiv~iNK~D~~~ 145 (526)
T PRK00741 89 HEDFSEDTYRTLTAVDSALMVIDAAKGVEP-QTRKLMEVCRL--RDTPIFTFINKLDRDG 145 (526)
T ss_pred chhhHHHHHHHHHHCCEEEEEEecCCCCCH-HHHHHHHHHHh--cCCCEEEEEECCcccc
Confidence 998887777788999999999999875422 22333444333 3899999999999764
|
|
| >CHL00071 tufA elongation factor Tu | Back alignment and domain information |
|---|
Probab=99.80 E-value=2.1e-18 Score=127.18 Aligned_cols=148 Identities=15% Similarity=0.070 Sum_probs=100.7
Q ss_pred CCCCeeEEEEEcCCCCcHHHHHHHHhcCCC--------------CCccccceeEEEeEEEEEecCcEEEEEEEeCCCccc
Q 030504 9 VDYPSFKLVIVGDGGTGKTTFVKRHLTGEF--------------EKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK 74 (176)
Q Consensus 9 ~~~~~~~i~i~G~~~~GKttl~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~ 74 (176)
.+.+.++|+++|++++|||||+++++.... ........|++.......++.+...+.+.||||+..
T Consensus 8 ~~~~~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~~iDtPGh~~ 87 (409)
T CHL00071 8 RKKPHVNIGTIGHVDHGKTTLTAAITMTLAAKGGAKAKKYDEIDSAPEEKARGITINTAHVEYETENRHYAHVDCPGHAD 87 (409)
T ss_pred CCCCeEEEEEECCCCCCHHHHHHHHHHHhCccccccccccccccCChhhhcCCEeEEccEEEEccCCeEEEEEECCChHH
Confidence 457889999999999999999999875211 001111245666655555655666788999999988
Q ss_pred cccccccccccccEEEEEEeCCChhhhhhHHHHHHHHhhhcCCCC-EEEEEeCCCCCcccc-----CHHHHHHHHHcC--
Q 030504 75 FGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIP-IVLCGNKVDVKNRQV-----KAKQVTFHRKKN-- 146 (176)
Q Consensus 75 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p-~liv~nK~Dl~~~~~-----~~~~~~~~~~~~-- 146 (176)
+.......+..+|++++|+|+.....-+... .+..+... +.| +++++||.|+.+... ..+...+++..+
T Consensus 88 ~~~~~~~~~~~~D~~ilVvda~~g~~~qt~~-~~~~~~~~--g~~~iIvvvNK~D~~~~~~~~~~~~~~l~~~l~~~~~~ 164 (409)
T CHL00071 88 YVKNMITGAAQMDGAILVVSAADGPMPQTKE-HILLAKQV--GVPNIVVFLNKEDQVDDEELLELVELEVRELLSKYDFP 164 (409)
T ss_pred HHHHHHHHHHhCCEEEEEEECCCCCcHHHHH-HHHHHHHc--CCCEEEEEEEccCCCCHHHHHHHHHHHHHHHHHHhCCC
Confidence 7666666678899999999998754323222 22333333 778 678899999975322 123334444433
Q ss_pred ---CeEEEeccCCCCC
Q 030504 147 ---LQYYEISAKSNYN 159 (176)
Q Consensus 147 ---~~~~~~S~~~~~~ 159 (176)
++++.+|+.+|.+
T Consensus 165 ~~~~~ii~~Sa~~g~n 180 (409)
T CHL00071 165 GDDIPIVSGSALLALE 180 (409)
T ss_pred CCcceEEEcchhhccc
Confidence 6899999999874
|
|
| >PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1 | Back alignment and domain information |
|---|
Probab=99.80 E-value=3.3e-18 Score=115.96 Aligned_cols=157 Identities=14% Similarity=0.193 Sum_probs=103.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEe-cCcEEEEEEEeCCCcccccc-----ccccccccccE
Q 030504 15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFT-NCGKIRFYCWDTAGQEKFGG-----LRDGYYIHGQC 88 (176)
Q Consensus 15 ~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~D~~g~~~~~~-----~~~~~~~~~~~ 88 (176)
||+++|+.+|||||+.+-+..+..+.+ ....|.|...-...+ ....+.+.+||.||+..+.. .....++++.+
T Consensus 1 KiLLmG~~~SGKTSi~~vIF~~~~p~d-T~~L~~T~~ve~~~v~~~~~~~l~iwD~pGq~~~~~~~~~~~~~~if~~v~~ 79 (232)
T PF04670_consen 1 KILLMGPRRSGKTSIRSVIFHKYSPRD-TLRLEPTIDVEKSHVRFLSFLPLNIWDCPGQDDFMENYFNSQREEIFSNVGV 79 (232)
T ss_dssp EEEEEESTTSSHHHHHHHHHS---GGG-GGG-----SEEEEEEECTTSCEEEEEEE-SSCSTTHTTHTCCHHHHHCTESE
T ss_pred CEEEEcCCCCChhhHHHHHHcCCCchh-ccccCCcCCceEEEEecCCCcEEEEEEcCCccccccccccccHHHHHhccCE
Confidence 799999999999999998665544333 344444444333333 24556899999999875533 35566889999
Q ss_pred EEEEEeCCChh---hhhhHHHHHHHHhhhcCCCCEEEEEeCCCCCccccCH--------HHHHHHHHcC---CeEEEecc
Q 030504 89 AIIMFDVTARL---TYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKA--------KQVTFHRKKN---LQYYEISA 154 (176)
Q Consensus 89 ~i~v~d~~~~~---s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~~~~~~~--------~~~~~~~~~~---~~~~~~S~ 154 (176)
+|||+|+.+.+ .+..+...+..+.+..|+..+.++.+|.|+..+.... ...+.+...+ +.++.||.
T Consensus 80 LIyV~D~qs~~~~~~l~~~~~~i~~l~~~sp~~~v~vfiHK~D~l~~~~r~~~~~~~~~~i~~~~~~~~~~~~~~~~TSI 159 (232)
T PF04670_consen 80 LIYVFDAQSDDYDEDLAYLSDCIEALRQYSPNIKVFVFIHKMDLLSEDEREEIFRDIQQRIRDELEDLGIEDITFFLTSI 159 (232)
T ss_dssp EEEEEETT-STCHHHHHHHHHHHHHHHHHSTT-EEEEEEE-CCCS-HHHHHHHHHHHHHHHHHHHHHTT-TSEEEEEE-T
T ss_pred EEEEEEcccccHHHHHHHHHHHHHHHHHhCCCCeEEEEEeecccCCHHHHHHHHHHHHHHHHHHhhhccccceEEEeccC
Confidence 99999999443 3444455666677777999999999999987533222 2234444555 78999998
Q ss_pred CCCCChHHHHHHHHHHHhc
Q 030504 155 KSNYNFEKPFLYLARKLAG 173 (176)
Q Consensus 155 ~~~~~v~~~~~~l~~~i~~ 173 (176)
.+ +.+-++|..+++.+..
T Consensus 160 ~D-~Sly~A~S~Ivq~LiP 177 (232)
T PF04670_consen 160 WD-ESLYEAWSKIVQKLIP 177 (232)
T ss_dssp TS-THHHHHHHHHHHTTST
T ss_pred cC-cHHHHHHHHHHHHHcc
Confidence 88 6999999999987653
|
RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A. |
| >PLN03126 Elongation factor Tu; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.1e-18 Score=130.07 Aligned_cols=148 Identities=14% Similarity=0.072 Sum_probs=102.3
Q ss_pred CCCCeeEEEEEcCCCCcHHHHHHHHhcC------CCCC--------ccccceeEEEeEEEEEecCcEEEEEEEeCCCccc
Q 030504 9 VDYPSFKLVIVGDGGTGKTTFVKRHLTG------EFEK--------KYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK 74 (176)
Q Consensus 9 ~~~~~~~i~i~G~~~~GKttl~~~~~~~------~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~ 74 (176)
...+.++|+++|++++|||||+++++.. .... ......|.+.+.....++.....+.++|+||++.
T Consensus 77 ~~k~~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~~~~i~liDtPGh~~ 156 (478)
T PLN03126 77 RKKPHVNIGTIGHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHAD 156 (478)
T ss_pred ccCCeeEEEEECCCCCCHHHHHHHHHHhhhhhccccccccccccCChhHHhCCeeEEEEEEEEecCCcEEEEEECCCHHH
Confidence 4678999999999999999999998741 1111 1122345666665555555667889999999999
Q ss_pred cccccccccccccEEEEEEeCCChhhhhhHHHHHHHHhhhcCCCC-EEEEEeCCCCCcccc-----CHHHHHHHHHc---
Q 030504 75 FGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIP-IVLCGNKVDVKNRQV-----KAKQVTFHRKK--- 145 (176)
Q Consensus 75 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p-~liv~nK~Dl~~~~~-----~~~~~~~~~~~--- 145 (176)
|.......+..+|++++|+|+.+...-+....+ ..+... ++| +++++||.|+.+... ..+...+.+..
T Consensus 157 f~~~~~~g~~~aD~ailVVda~~G~~~qt~e~~-~~~~~~--gi~~iIvvvNK~Dl~~~~~~~~~i~~~i~~~l~~~g~~ 233 (478)
T PLN03126 157 YVKNMITGAAQMDGAILVVSGADGPMPQTKEHI-LLAKQV--GVPNMVVFLNKQDQVDDEELLELVELEVRELLSSYEFP 233 (478)
T ss_pred HHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHH-HHHHHc--CCCeEEEEEecccccCHHHHHHHHHHHHHHHHHhcCCC
Confidence 877667777889999999999976543333333 333333 778 778899999975221 11233444443
Q ss_pred --CCeEEEeccCCCCC
Q 030504 146 --NLQYYEISAKSNYN 159 (176)
Q Consensus 146 --~~~~~~~S~~~~~~ 159 (176)
.++++.+|+.++.+
T Consensus 234 ~~~~~~vp~Sa~~g~n 249 (478)
T PLN03126 234 GDDIPIISGSALLALE 249 (478)
T ss_pred cCcceEEEEEcccccc
Confidence 46799999998753
|
|
| >TIGR02034 CysN sulfate adenylyltransferase, large subunit | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.7e-18 Score=127.53 Aligned_cols=147 Identities=17% Similarity=0.207 Sum_probs=97.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcC--CCCC-------------c----------------cccceeEEEeEEEEEecCcEE
Q 030504 14 FKLVIVGDGGTGKTTFVKRHLTG--EFEK-------------K----------------YEPTIGVEVHPLDFFTNCGKI 62 (176)
Q Consensus 14 ~~i~i~G~~~~GKttl~~~~~~~--~~~~-------------~----------------~~~~~~~~~~~~~~~~~~~~~ 62 (176)
+||+++|+.++|||||+.+++.. .... . .....|.+.+.....+.....
T Consensus 1 ~~~~~vGhvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid~~~~~~~~~~~ 80 (406)
T TIGR02034 1 LRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITIDVAYRYFSTDKR 80 (406)
T ss_pred CeEEEECCCCCCchhhhHHHHHHcCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeEeeeEEEccCCe
Confidence 58999999999999999998631 1110 0 001123445555555555667
Q ss_pred EEEEEeCCCccccccccccccccccEEEEEEeCCChhhhhhHHHHHHHHhhhcCCCCEEEEEeCCCCCccccC------H
Q 030504 63 RFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVK------A 136 (176)
Q Consensus 63 ~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~~~~~~------~ 136 (176)
.+.++||||++.|.......+..+|++++|+|+..+..-+....+. .+ ......++++++||.|+.+.... .
T Consensus 81 ~~~liDtPGh~~f~~~~~~~~~~aD~allVVda~~G~~~qt~~~~~-~~-~~~~~~~iivviNK~D~~~~~~~~~~~i~~ 158 (406)
T TIGR02034 81 KFIVADTPGHEQYTRNMATGASTADLAVLLVDARKGVLEQTRRHSY-IA-SLLGIRHVVLAVNKMDLVDYDEEVFENIKK 158 (406)
T ss_pred EEEEEeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCCccccHHHHH-HH-HHcCCCcEEEEEEecccccchHHHHHHHHH
Confidence 8999999999988665556678999999999998765444333332 12 22224468899999998742211 1
Q ss_pred HHHHHHHHcC---CeEEEeccCCCCChHH
Q 030504 137 KQVTFHRKKN---LQYYEISAKSNYNFEK 162 (176)
Q Consensus 137 ~~~~~~~~~~---~~~~~~S~~~~~~v~~ 162 (176)
+...+.+..+ ++++++||++|+|+.+
T Consensus 159 ~~~~~~~~~~~~~~~iipiSA~~g~ni~~ 187 (406)
T TIGR02034 159 DYLAFAEQLGFRDVTFIPLSALKGDNVVS 187 (406)
T ss_pred HHHHHHHHcCCCCccEEEeecccCCCCcc
Confidence 1223334433 4699999999999875
|
Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase). |
| >COG1084 Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.79 E-value=3.5e-18 Score=118.42 Aligned_cols=163 Identities=15% Similarity=0.157 Sum_probs=115.4
Q ss_pred CCCCCCCeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCcc-----ccccccc
Q 030504 6 QQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE-----KFGGLRD 80 (176)
Q Consensus 6 ~~~~~~~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~-----~~~~~~~ 80 (176)
-+..++....|+|.|.||||||||++.+..... +..+..-+|.......++.....++++||||.= +......
T Consensus 161 LP~Idp~~pTivVaG~PNVGKSSlv~~lT~Akp--EvA~YPFTTK~i~vGhfe~~~~R~QvIDTPGlLDRPl~ErN~IE~ 238 (346)
T COG1084 161 LPAIDPDLPTIVVAGYPNVGKSSLVRKLTTAKP--EVAPYPFTTKGIHVGHFERGYLRIQVIDTPGLLDRPLEERNEIER 238 (346)
T ss_pred CCCCCCCCCeEEEecCCCCcHHHHHHHHhcCCC--ccCCCCccccceeEeeeecCCceEEEecCCcccCCChHHhcHHHH
Confidence 456777888999999999999999999664443 234444445555556667677889999999931 1111111
Q ss_pred ----cccccccEEEEEEeCCCh--hhhhhHHHHHHHHhhhcCCCCEEEEEeCCCCCccccCHHHHH-HHHHcCCeEEEec
Q 030504 81 ----GYYIHGQCAIIMFDVTAR--LTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVT-FHRKKNLQYYEIS 153 (176)
Q Consensus 81 ----~~~~~~~~~i~v~d~~~~--~s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~~~~~~~~~~~-~~~~~~~~~~~~S 153 (176)
+.-.-.++++|++|++.. .+.+...+++..+...+. .|+++|.||.|..+.....+... .....+.....++
T Consensus 239 qAi~AL~hl~~~IlF~~D~Se~cgy~lE~Q~~L~~eIk~~f~-~p~v~V~nK~D~~~~e~~~~~~~~~~~~~~~~~~~~~ 317 (346)
T COG1084 239 QAILALRHLAGVILFLFDPSETCGYSLEEQISLLEEIKELFK-APIVVVINKIDIADEEKLEEIEASVLEEGGEEPLKIS 317 (346)
T ss_pred HHHHHHHHhcCeEEEEEcCccccCCCHHHHHHHHHHHHHhcC-CCeEEEEecccccchhHHHHHHHHHHhhcccccccee
Confidence 112235899999999954 466777788888888765 89999999999987655555443 3334445578889
Q ss_pred cCCCCChHHHHHHHHHHH
Q 030504 154 AKSNYNFEKPFLYLARKL 171 (176)
Q Consensus 154 ~~~~~~v~~~~~~l~~~i 171 (176)
+..+.+++.+-..+....
T Consensus 318 ~~~~~~~d~~~~~v~~~a 335 (346)
T COG1084 318 ATKGCGLDKLREEVRKTA 335 (346)
T ss_pred eeehhhHHHHHHHHHHHh
Confidence 999999888777766653
|
|
| >PLN00043 elongation factor 1-alpha; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.9e-18 Score=128.22 Aligned_cols=151 Identities=17% Similarity=0.254 Sum_probs=105.3
Q ss_pred CCCCeeEEEEEcCCCCcHHHHHHHHhc--CCCCC---------------------------ccccceeEEEeEEEEEecC
Q 030504 9 VDYPSFKLVIVGDGGTGKTTFVKRHLT--GEFEK---------------------------KYEPTIGVEVHPLDFFTNC 59 (176)
Q Consensus 9 ~~~~~~~i~i~G~~~~GKttl~~~~~~--~~~~~---------------------------~~~~~~~~~~~~~~~~~~~ 59 (176)
...++++|+++|+.++|||||+.+++. |.... ......|.+.......++.
T Consensus 3 ~~k~~~ni~i~Ghvd~GKSTL~g~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~a~~~D~~~~Er~rGiTi~~~~~~~~~ 82 (447)
T PLN00043 3 KEKVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFET 82 (447)
T ss_pred CCCceEEEEEEecCCCCHHHHHHHHHHHhCCCcHHHHHHHhhhhhhhcccchhhhhhhcCCHhHHhcCceEEEEEEEecC
Confidence 357889999999999999999998764 21100 0011234555555556667
Q ss_pred cEEEEEEEeCCCccccccccccccccccEEEEEEeCCChhhhh-------hHHHHHHHHhhhcCCCC-EEEEEeCCCCCc
Q 030504 60 GKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYK-------NVPTWHRDLCRVCENIP-IVLCGNKVDVKN 131 (176)
Q Consensus 60 ~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~-------~~~~~~~~~~~~~~~~p-~liv~nK~Dl~~ 131 (176)
....+.++|+|||++|.......+..+|++++|+|+++.. ++ .....+...... +.| +++++||.|+..
T Consensus 83 ~~~~i~liDtPGh~df~~~~~~g~~~aD~aIlVVda~~G~-~e~g~~~~~qT~eh~~~~~~~--gi~~iIV~vNKmD~~~ 159 (447)
T PLN00043 83 TKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGG-FEAGISKDGQTREHALLAFTL--GVKQMICCCNKMDATT 159 (447)
T ss_pred CCEEEEEEECCCHHHHHHHHHhhhhhccEEEEEEEcccCc-eecccCCCchHHHHHHHHHHc--CCCcEEEEEEcccCCc
Confidence 7788999999999999988888899999999999998742 21 222222222222 664 788899999863
Q ss_pred cc--------cCHHHHHHHHHcC-----CeEEEeccCCCCChHH
Q 030504 132 RQ--------VKAKQVTFHRKKN-----LQYYEISAKSNYNFEK 162 (176)
Q Consensus 132 ~~--------~~~~~~~~~~~~~-----~~~~~~S~~~~~~v~~ 162 (176)
.. ...+...++++.+ ++++++|+++|+|+.+
T Consensus 160 ~~~~~~~~~~i~~ei~~~l~~~g~~~~~~~~ipiSa~~G~ni~~ 203 (447)
T PLN00043 160 PKYSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIE 203 (447)
T ss_pred hhhhHHHHHHHHHHHHHHHHHcCCCcccceEEEEeccccccccc
Confidence 11 2334456666655 6799999999999853
|
|
| >cd04104 p47_IIGP_like p47 (47-kDa) family | Back alignment and domain information |
|---|
Probab=99.79 E-value=5.5e-18 Score=113.64 Aligned_cols=154 Identities=16% Similarity=0.187 Sum_probs=94.0
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeE---EEeEEEEEecCcEEEEEEEeCCCcccccccccc-----ccc
Q 030504 13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGV---EVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDG-----YYI 84 (176)
Q Consensus 13 ~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~-----~~~ 84 (176)
++||+++|.+|+|||||+|.+.+...........+. +.....+.. .....+.+|||||.......... .+.
T Consensus 1 ~~kI~i~G~~g~GKSSLin~L~g~~~~~~~~~~~~~~~~t~~~~~~~~-~~~~~l~l~DtpG~~~~~~~~~~~l~~~~~~ 79 (197)
T cd04104 1 PLNIAVTGESGAGKSSFINALRGVGHEEEGAAPTGVVETTMKRTPYPH-PKFPNVTLWDLPGIGSTAFPPDDYLEEMKFS 79 (197)
T ss_pred CeEEEEECCCCCCHHHHHHHHhccCCCCCCccccCccccccCceeeec-CCCCCceEEeCCCCCcccCCHHHHHHHhCcc
Confidence 479999999999999999998765443322222221 111111111 12336899999997543222222 256
Q ss_pred cccEEEEEEeCCChhhhhhHH-HHHHHHhhhcCCCCEEEEEeCCCCCcccc-------------CHHHHHH----HHHc-
Q 030504 85 HGQCAIIMFDVTARLTYKNVP-TWHRDLCRVCENIPIVLCGNKVDVKNRQV-------------KAKQVTF----HRKK- 145 (176)
Q Consensus 85 ~~~~~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~p~liv~nK~Dl~~~~~-------------~~~~~~~----~~~~- 145 (176)
++|+++++.+. .+.... .++..+.+. +.|+++|+||+|+..... .++..+. ....
T Consensus 80 ~~d~~l~v~~~----~~~~~d~~~~~~l~~~--~~~~ilV~nK~D~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~~ 153 (197)
T cd04104 80 EYDFFIIISST----RFSSNDVKLAKAIQCM--GKKFYFVRTKVDRDLSNEQRSKPRSFNREQVLQEIRDNCLENLQEAG 153 (197)
T ss_pred CcCEEEEEeCC----CCCHHHHHHHHHHHHh--CCCEEEEEecccchhhhhhccccccccHHHHHHHHHHHHHHHHHHcC
Confidence 78988887432 223232 455555554 789999999999843111 1111111 2221
Q ss_pred --CCeEEEeccC--CCCChHHHHHHHHHHHhc
Q 030504 146 --NLQYYEISAK--SNYNFEKPFLYLARKLAG 173 (176)
Q Consensus 146 --~~~~~~~S~~--~~~~v~~~~~~l~~~i~~ 173 (176)
...+|.+|+. .+.|+..+.+.+...+.+
T Consensus 154 ~~~p~v~~vS~~~~~~~~~~~l~~~~~~~l~~ 185 (197)
T cd04104 154 VSEPPVFLVSNFDPSDYDFPKLRETLLKDLPA 185 (197)
T ss_pred CCCCCEEEEeCCChhhcChHHHHHHHHHHhhH
Confidence 2478999998 578999999999988764
|
The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei |
| >PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.6e-18 Score=129.60 Aligned_cols=152 Identities=17% Similarity=0.189 Sum_probs=98.4
Q ss_pred CCCeeEEEEEcCCCCcHHHHHHHHhcCC--CCC------------cc-----------------ccceeEEEeEEEEEec
Q 030504 10 DYPSFKLVIVGDGGTGKTTFVKRHLTGE--FEK------------KY-----------------EPTIGVEVHPLDFFTN 58 (176)
Q Consensus 10 ~~~~~~i~i~G~~~~GKttl~~~~~~~~--~~~------------~~-----------------~~~~~~~~~~~~~~~~ 58 (176)
..+.+||+++|+.++|||||+.+++... ... .. ....|++.......+.
T Consensus 24 ~~~~~~i~iiGhvdaGKSTL~~~LL~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr~rgiTid~~~~~~~ 103 (474)
T PRK05124 24 HKSLLRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFS 103 (474)
T ss_pred ccCceEEEEECCCCCChHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhccCChHHhhcCCCeEeeEEEec
Confidence 4678999999999999999999987421 110 00 0012334444444455
Q ss_pred CcEEEEEEEeCCCccccccccccccccccEEEEEEeCCChhhhhhHHHHHHHHhhhcCCCCEEEEEeCCCCCcccc--CH
Q 030504 59 CGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQV--KA 136 (176)
Q Consensus 59 ~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~~~~~--~~ 136 (176)
.....+.++||||++.+.......+..+|++++|+|+.....-+....+. .+ ......|+++++||.|+.+... ..
T Consensus 104 ~~~~~i~~iDTPGh~~f~~~~~~~l~~aD~allVVDa~~G~~~qt~~~~~-l~-~~lg~~~iIvvvNKiD~~~~~~~~~~ 181 (474)
T PRK05124 104 TEKRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLDQTRRHSF-IA-TLLGIKHLVVAVNKMDLVDYSEEVFE 181 (474)
T ss_pred cCCcEEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccccchHHHH-HH-HHhCCCceEEEEEeeccccchhHHHH
Confidence 56678899999999887655555568999999999998764333322222 11 1112357899999999974221 11
Q ss_pred H----HHHHHHHc----CCeEEEeccCCCCChHHH
Q 030504 137 K----QVTFHRKK----NLQYYEISAKSNYNFEKP 163 (176)
Q Consensus 137 ~----~~~~~~~~----~~~~~~~S~~~~~~v~~~ 163 (176)
+ ...+.... ..+++++||++|+|+.++
T Consensus 182 ~i~~~l~~~~~~~~~~~~~~iipvSA~~g~ni~~~ 216 (474)
T PRK05124 182 RIREDYLTFAEQLPGNLDIRFVPLSALEGDNVVSQ 216 (474)
T ss_pred HHHHHHHHHHHhcCCCCCceEEEEEeecCCCcccc
Confidence 1 11223332 368999999999998764
|
|
| >PRK13351 elongation factor G; Reviewed | Back alignment and domain information |
|---|
Probab=99.79 E-value=3.1e-18 Score=133.79 Aligned_cols=118 Identities=21% Similarity=0.243 Sum_probs=85.0
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHhcCCC-------------CCccc---cceeEEEeEEEEEecCcEEEEEEEeCCCccc
Q 030504 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEF-------------EKKYE---PTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK 74 (176)
Q Consensus 11 ~~~~~i~i~G~~~~GKttl~~~~~~~~~-------------~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~ 74 (176)
....||+|+|+.++|||||+++++...- ...+. ...+.+..............+.+|||||+.+
T Consensus 6 ~~irni~iiG~~~~GKTtL~~~ll~~~g~~~~~~~v~~~~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~d 85 (687)
T PRK13351 6 MQIRNIGILAHIDAGKTTLTERILFYTGKIHKMGEVEDGTTVTDWMPQEQERGITIESAATSCDWDNHRINLIDTPGHID 85 (687)
T ss_pred ccccEEEEECCCCCcchhHHHHHHHhcCCccccccccCCcccCCCCHHHHhcCCCcccceEEEEECCEEEEEEECCCcHH
Confidence 3568999999999999999999874211 00000 0123333333334444677899999999998
Q ss_pred cccccccccccccEEEEEEeCCChhhhhhHHHHHHHHhhhcCCCCEEEEEeCCCCCc
Q 030504 75 FGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKN 131 (176)
Q Consensus 75 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~~ 131 (176)
+...+..+++.+|++++|+|+++....+....| ..+... +.|+++++||+|+..
T Consensus 86 f~~~~~~~l~~aD~~ilVvd~~~~~~~~~~~~~-~~~~~~--~~p~iiviNK~D~~~ 139 (687)
T PRK13351 86 FTGEVERSLRVLDGAVVVFDAVTGVQPQTETVW-RQADRY--GIPRLIFINKMDRVG 139 (687)
T ss_pred HHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHH-HHHHhc--CCCEEEEEECCCCCC
Confidence 888888899999999999999987665544444 333333 889999999999875
|
|
| >cd01850 CDC_Septin CDC/Septin | Back alignment and domain information |
|---|
Probab=99.78 E-value=7.9e-18 Score=117.92 Aligned_cols=140 Identities=17% Similarity=0.278 Sum_probs=90.9
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCCCCCc----------cccceeEEEeEEEEEecCcEEEEEEEeCCCccccc------
Q 030504 13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKK----------YEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFG------ 76 (176)
Q Consensus 13 ~~~i~i~G~~~~GKttl~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~------ 76 (176)
.++|+++|.+|+|||||+|+++....... ..++.+.+........++..+.+.+|||||.....
T Consensus 4 ~f~I~vvG~sg~GKSTliN~L~~~~~~~~~~~~~~~~~~~~~T~~i~~~~~~i~~~g~~~~l~iiDTpGfgd~~~~~~~~ 83 (276)
T cd01850 4 QFNIMVVGESGLGKSTFINTLFNTKLIPSDYPPDPAEEHIDKTVEIKSSKAEIEENGVKLKLTVIDTPGFGDNINNSDCW 83 (276)
T ss_pred EEEEEEEcCCCCCHHHHHHHHHcCCCccccCCCCccccccCCceEEEEEEEEEEECCEEEEEEEEecCCccccccchhhH
Confidence 68999999999999999999987765432 24444445455555556677899999999943221
Q ss_pred --------------------cccccccc--cccEEEEEEeCCChhhhhhH-HHHHHHHhhhcCCCCEEEEEeCCCCCccc
Q 030504 77 --------------------GLRDGYYI--HGQCAIIMFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGNKVDVKNRQ 133 (176)
Q Consensus 77 --------------------~~~~~~~~--~~~~~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~p~liv~nK~Dl~~~~ 133 (176)
......+. ++|+++|+++.+.. ..... ...+..+. ...|+++|+||+|+....
T Consensus 84 ~~i~~yi~~q~~~~l~~e~~~~r~~~~~d~rvh~~ly~i~~~~~-~l~~~D~~~lk~l~---~~v~vi~VinK~D~l~~~ 159 (276)
T cd01850 84 KPIVDYIDDQFDQYLREESRIKRNPRIPDTRVHACLYFIEPTGH-GLKPLDIEFMKRLS---KRVNIIPVIAKADTLTPE 159 (276)
T ss_pred HHHHHHHHHHHHHHHHHHhhhcccccCCCCceEEEEEEEeCCCC-CCCHHHHHHHHHHh---ccCCEEEEEECCCcCCHH
Confidence 11112333 46778888876642 22222 22333333 378999999999985422
Q ss_pred ----cCHHHHHHHHHcCCeEEEeccCC
Q 030504 134 ----VKAKQVTFHRKKNLQYYEISAKS 156 (176)
Q Consensus 134 ----~~~~~~~~~~~~~~~~~~~S~~~ 156 (176)
......+.+..+++.+|......
T Consensus 160 e~~~~k~~i~~~l~~~~i~~~~~~~~~ 186 (276)
T cd01850 160 ELKEFKQRIMEDIEEHNIKIYKFPEDE 186 (276)
T ss_pred HHHHHHHHHHHHHHHcCCceECCCCCc
Confidence 23335577777888888776543
|
Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities. |
| >PRK00049 elongation factor Tu; Reviewed | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.2e-17 Score=122.78 Aligned_cols=160 Identities=13% Similarity=0.054 Sum_probs=107.1
Q ss_pred CCCCeeEEEEEcCCCCcHHHHHHHHhcCCCC--------------CccccceeEEEeEEEEEecCcEEEEEEEeCCCccc
Q 030504 9 VDYPSFKLVIVGDGGTGKTTFVKRHLTGEFE--------------KKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK 74 (176)
Q Consensus 9 ~~~~~~~i~i~G~~~~GKttl~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~ 74 (176)
...+.++|+++|+.++|||||+++++..... .......|.+.......+......+.+.||||+.+
T Consensus 8 ~~~~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~ 87 (396)
T PRK00049 8 RTKPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGAEAKAYDQIDKAPEEKARGITINTAHVEYETEKRHYAHVDCPGHAD 87 (396)
T ss_pred CCCCEEEEEEEeECCCCHHHHHHHHHHhhhhccCCcccchhhccCChHHHhcCeEEeeeEEEEcCCCeEEEEEECCCHHH
Confidence 4568899999999999999999998752110 01112345666666566655667788999999988
Q ss_pred cccccccccccccEEEEEEeCCChhhhhhHHHHHHHHhhhcCCCCEE-EEEeCCCCCcccc-----CHHHHHHHHHc---
Q 030504 75 FGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIV-LCGNKVDVKNRQV-----KAKQVTFHRKK--- 145 (176)
Q Consensus 75 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~l-iv~nK~Dl~~~~~-----~~~~~~~~~~~--- 145 (176)
+.......+..+|++++|+|+..+..-+.. ..+..+... +.|.+ +++||.|+.+... ..+...+....
T Consensus 88 f~~~~~~~~~~aD~~llVVDa~~g~~~qt~-~~~~~~~~~--g~p~iiVvvNK~D~~~~~~~~~~~~~~i~~~l~~~~~~ 164 (396)
T PRK00049 88 YVKNMITGAAQMDGAILVVSAADGPMPQTR-EHILLARQV--GVPYIVVFLNKCDMVDDEELLELVEMEVRELLSKYDFP 164 (396)
T ss_pred HHHHHHhhhccCCEEEEEEECCCCCchHHH-HHHHHHHHc--CCCEEEEEEeecCCcchHHHHHHHHHHHHHHHHhcCCC
Confidence 766666667899999999999875432222 223333333 78876 5799999974221 11223344333
Q ss_pred --CCeEEEeccCCCC----------ChHHHHHHHHHHH
Q 030504 146 --NLQYYEISAKSNY----------NFEKPFLYLARKL 171 (176)
Q Consensus 146 --~~~~~~~S~~~~~----------~v~~~~~~l~~~i 171 (176)
.++++.+|++++. ++..+++.|...+
T Consensus 165 ~~~~~iv~iSa~~g~~~~~~~~w~~~~~~ll~~l~~~~ 202 (396)
T PRK00049 165 GDDTPIIRGSALKALEGDDDEEWEKKILELMDAVDSYI 202 (396)
T ss_pred ccCCcEEEeecccccCCCCcccccccHHHHHHHHHhcC
Confidence 3689999999875 4566776666543
|
|
| >cd04170 EF-G_bact Elongation factor G (EF-G) subfamily | Back alignment and domain information |
|---|
Probab=99.78 E-value=4.5e-18 Score=119.25 Aligned_cols=133 Identities=16% Similarity=0.186 Sum_probs=86.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCC--Cc--cc--c----------ceeEEEeEEEEEecCcEEEEEEEeCCCccccccc
Q 030504 15 KLVIVGDGGTGKTTFVKRHLTGEFE--KK--YE--P----------TIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGL 78 (176)
Q Consensus 15 ~i~i~G~~~~GKttl~~~~~~~~~~--~~--~~--~----------~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~ 78 (176)
+|+++|++|+|||||+++++..... .. .. . ..+.+..............+.+|||||+..+...
T Consensus 1 ni~ivG~~gsGKStL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~~f~~~ 80 (268)
T cd04170 1 NIALVGHSGSGKTTLAEALLYATGAIDRLGSVEDGTTVSDYDPEEIKRKMSISTSVAPLEWKGHKINLIDTPGYADFVGE 80 (268)
T ss_pred CEEEECCCCCCHHHHHHHHHHhcCCCccCCeecCCcccCCCCHHHHhhcccccceeEEEEECCEEEEEEECcCHHHHHHH
Confidence 5899999999999999997642111 00 00 0 0122222233334445678899999999887777
Q ss_pred cccccccccEEEEEEeCCChhhhhhHHHHHHHHhhhcCCCCEEEEEeCCCCCccccCHHHHHHHHHcCCeEE
Q 030504 79 RDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYY 150 (176)
Q Consensus 79 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~~~~~~~~~~~~~~~~~~~~~ 150 (176)
+...+..+|++++|+|+++.........| ..+... +.|.++++||.|+...........+....+..++
T Consensus 81 ~~~~l~~aD~~i~Vvd~~~g~~~~~~~~~-~~~~~~--~~p~iivvNK~D~~~~~~~~~~~~l~~~~~~~~~ 149 (268)
T cd04170 81 TRAALRAADAALVVVSAQSGVEVGTEKLW-EFADEA--GIPRIIFINKMDRERADFDKTLAALQEAFGRPVV 149 (268)
T ss_pred HHHHHHHCCEEEEEEeCCCCCCHHHHHHH-HHHHHc--CCCEEEEEECCccCCCCHHHHHHHHHHHhCCCeE
Confidence 78888999999999999986544333222 333333 7899999999999875433333333334444433
|
Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group |
| >PTZ00141 elongation factor 1- alpha; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.2e-17 Score=124.06 Aligned_cols=150 Identities=20% Similarity=0.227 Sum_probs=102.7
Q ss_pred CCCeeEEEEEcCCCCcHHHHHHHHhc--CCCCC---------------------------ccccceeEEEeEEEEEecCc
Q 030504 10 DYPSFKLVIVGDGGTGKTTFVKRHLT--GEFEK---------------------------KYEPTIGVEVHPLDFFTNCG 60 (176)
Q Consensus 10 ~~~~~~i~i~G~~~~GKttl~~~~~~--~~~~~---------------------------~~~~~~~~~~~~~~~~~~~~ 60 (176)
..++++|+++|+.++|||||+.+++. |.... ......|.+.......++..
T Consensus 4 ~k~~~nv~i~Ghvd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~s~~~a~~~D~~~~Er~rGiTid~~~~~~~~~ 83 (446)
T PTZ00141 4 EKTHINLVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETP 83 (446)
T ss_pred CCceEEEEEEecCCCCHHHHHHHHHHHcCCcChHHHHHHhhHHHhhCCcchhhhhhhcCChHHHhcCEeEEeeeEEEccC
Confidence 46789999999999999999999864 21110 00112355555555566677
Q ss_pred EEEEEEEeCCCccccccccccccccccEEEEEEeCCChhh-------hhhHHHHHHHHhhhcCCCC-EEEEEeCCCCCc-
Q 030504 61 KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLT-------YKNVPTWHRDLCRVCENIP-IVLCGNKVDVKN- 131 (176)
Q Consensus 61 ~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s-------~~~~~~~~~~~~~~~~~~p-~liv~nK~Dl~~- 131 (176)
...+.++|+|||++|.......+..+|++++|+|++.+.. -+...+| ..+... +.| +++++||.|...
T Consensus 84 ~~~i~lIDtPGh~~f~~~~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~-~~~~~~--gi~~iiv~vNKmD~~~~ 160 (446)
T PTZ00141 84 KYYFTIIDAPGHRDFIKNMITGTSQADVAILVVASTAGEFEAGISKDGQTREHA-LLAFTL--GVKQMIVCINKMDDKTV 160 (446)
T ss_pred CeEEEEEECCChHHHHHHHHHhhhhcCEEEEEEEcCCCceecccCCCccHHHHH-HHHHHc--CCCeEEEEEEccccccc
Confidence 7889999999999988777777889999999999987531 1222232 233333 666 678999999532
Q ss_pred -------cccCHHHHHHHHHc-----CCeEEEeccCCCCChHH
Q 030504 132 -------RQVKAKQVTFHRKK-----NLQYYEISAKSNYNFEK 162 (176)
Q Consensus 132 -------~~~~~~~~~~~~~~-----~~~~~~~S~~~~~~v~~ 162 (176)
+....+..+++... .++++.+|+.+|+|+.+
T Consensus 161 ~~~~~~~~~i~~~i~~~l~~~g~~~~~~~~ipiSa~~g~ni~~ 203 (446)
T PTZ00141 161 NYSQERYDEIKKEVSAYLKKVGYNPEKVPFIPISGWQGDNMIE 203 (446)
T ss_pred hhhHHHHHHHHHHHHHHHHhcCCCcccceEEEeecccCCCccc
Confidence 11122333444443 36799999999999864
|
|
| >cd01886 EF-G Elongation factor G (EF-G) subfamily | Back alignment and domain information |
|---|
Probab=99.77 E-value=6e-18 Score=118.09 Aligned_cols=116 Identities=24% Similarity=0.239 Sum_probs=83.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhc--CCCCC--------------ccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccc
Q 030504 15 KLVIVGDGGTGKTTFVKRHLT--GEFEK--------------KYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGL 78 (176)
Q Consensus 15 ~i~i~G~~~~GKttl~~~~~~--~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~ 78 (176)
||+++|++++|||||+++++. |.... ......|++.......+......+.++||||+..+...
T Consensus 1 nv~ivGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~df~~~ 80 (270)
T cd01886 1 NIGIIAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERGITIQSAATTCFWKDHRINIIDTPGHVDFTIE 80 (270)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCCcccccccCCccccCCCccccCCCcCeeccEEEEEECCEEEEEEECCCcHHHHHH
Confidence 689999999999999999863 21110 00112355555555556666788999999999888888
Q ss_pred cccccccccEEEEEEeCCChhhhhhHHHHHHHHhhhcCCCCEEEEEeCCCCCccc
Q 030504 79 RDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQ 133 (176)
Q Consensus 79 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~~~~ 133 (176)
+...++.+|++++|+|+.+...-+. ...+..+... ++|+++++||.|+.+..
T Consensus 81 ~~~~l~~aD~ailVVDa~~g~~~~t-~~~~~~~~~~--~~p~ivviNK~D~~~a~ 132 (270)
T cd01886 81 VERSLRVLDGAVAVFDAVAGVEPQT-ETVWRQADRY--NVPRIAFVNKMDRTGAD 132 (270)
T ss_pred HHHHHHHcCEEEEEEECCCCCCHHH-HHHHHHHHHc--CCCEEEEEECCCCCCCC
Confidence 8888999999999999987543222 2233333333 78999999999997643
|
Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta |
| >KOG0462 consensus Elongation factor-type GTP-binding protein [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.77 E-value=7.7e-18 Score=123.34 Aligned_cols=159 Identities=17% Similarity=0.230 Sum_probs=123.2
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHhc--CCCCC-----------ccccceeEEEeEEEEEe---cCcEEEEEEEeCCCcccc
Q 030504 12 PSFKLVIVGDGGTGKTTFVKRHLT--GEFEK-----------KYEPTIGVEVHPLDFFT---NCGKIRFYCWDTAGQEKF 75 (176)
Q Consensus 12 ~~~~i~i~G~~~~GKttl~~~~~~--~~~~~-----------~~~~~~~~~~~~~~~~~---~~~~~~~~~~D~~g~~~~ 75 (176)
+-.|+.|+-+...|||||..+++. |--.. ......|+|....+... +++.+.+.++|||||..|
T Consensus 59 ~iRNfsIIAHVDHGKSTLaDrLLe~tg~i~~~~~q~q~LDkl~vERERGITIkaQtasify~~~~~ylLNLIDTPGHvDF 138 (650)
T KOG0462|consen 59 NIRNFSIIAHVDHGKSTLADRLLELTGTIDNNIGQEQVLDKLQVERERGITIKAQTASIFYKDGQSYLLNLIDTPGHVDF 138 (650)
T ss_pred hccceEEEEEecCCcchHHHHHHHHhCCCCCCCchhhhhhhhhhhhhcCcEEEeeeeEEEEEcCCceEEEeecCCCcccc
Confidence 456899999999999999999874 31110 11123455555544332 356699999999999999
Q ss_pred ccccccccccccEEEEEEeCCChhhhhhHHHHHHHHhhhcCCCCEEEEEeCCCCCccccCH---HHHHHHHHcCCeEEEe
Q 030504 76 GGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKA---KQVTFHRKKNLQYYEI 152 (176)
Q Consensus 76 ~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~~~~~~~---~~~~~~~~~~~~~~~~ 152 (176)
.......+.-++++++|+|++.+..-+....++..+.. +..++.|+||.|++...+.. +..+++.....+.+.+
T Consensus 139 s~EVsRslaac~G~lLvVDA~qGvqAQT~anf~lAfe~---~L~iIpVlNKIDlp~adpe~V~~q~~~lF~~~~~~~i~v 215 (650)
T KOG0462|consen 139 SGEVSRSLAACDGALLVVDASQGVQAQTVANFYLAFEA---GLAIIPVLNKIDLPSADPERVENQLFELFDIPPAEVIYV 215 (650)
T ss_pred cceehehhhhcCceEEEEEcCcCchHHHHHHHHHHHHc---CCeEEEeeeccCCCCCCHHHHHHHHHHHhcCCccceEEE
Confidence 99888889999999999999998777777766655544 88999999999999766544 3445566666789999
Q ss_pred ccCCCCChHHHHHHHHHHHhc
Q 030504 153 SAKSNYNFEKPFLYLARKLAG 173 (176)
Q Consensus 153 S~~~~~~v~~~~~~l~~~i~~ 173 (176)
||++|.|+++++..+++.+.-
T Consensus 216 SAK~G~~v~~lL~AII~rVPp 236 (650)
T KOG0462|consen 216 SAKTGLNVEELLEAIIRRVPP 236 (650)
T ss_pred EeccCccHHHHHHHHHhhCCC
Confidence 999999999999999998764
|
|
| >PLN03127 Elongation factor Tu; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=3.4e-17 Score=121.47 Aligned_cols=161 Identities=16% Similarity=0.094 Sum_probs=104.9
Q ss_pred CCCCeeEEEEEcCCCCcHHHHHHHHhc-----CCCC---------CccccceeEEEeEEEEEecCcEEEEEEEeCCCccc
Q 030504 9 VDYPSFKLVIVGDGGTGKTTFVKRHLT-----GEFE---------KKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK 74 (176)
Q Consensus 9 ~~~~~~~i~i~G~~~~GKttl~~~~~~-----~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~ 74 (176)
...++++|+++|+.++|||||++++.. |... .......|++.......++.....+.+.||||++.
T Consensus 57 ~~k~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~~iDtPGh~~ 136 (447)
T PLN03127 57 RTKPHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAPEEKARGITIATAHVEYETAKRHYAHVDCPGHAD 136 (447)
T ss_pred cCCceEEEEEECcCCCCHHHHHHHHHhHHHHhhcccceeeccccCChhHhhcCceeeeeEEEEcCCCeEEEEEECCCccc
Confidence 456889999999999999999999752 1110 00112245666666666666667889999999988
Q ss_pred cccccccccccccEEEEEEeCCChhhhhhHHHHHHHHhhhcCCCC-EEEEEeCCCCCccccC-H----HHHHHHHHc---
Q 030504 75 FGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIP-IVLCGNKVDVKNRQVK-A----KQVTFHRKK--- 145 (176)
Q Consensus 75 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p-~liv~nK~Dl~~~~~~-~----~~~~~~~~~--- 145 (176)
+.......+..+|++++|+|+.+...-+. ...+..+... +.| +++++||+|+.+.... . +..++....
T Consensus 137 f~~~~~~g~~~aD~allVVda~~g~~~qt-~e~l~~~~~~--gip~iIvviNKiDlv~~~~~~~~i~~~i~~~l~~~~~~ 213 (447)
T PLN03127 137 YVKNMITGAAQMDGGILVVSAPDGPMPQT-KEHILLARQV--GVPSLVVFLNKVDVVDDEELLELVEMELRELLSFYKFP 213 (447)
T ss_pred hHHHHHHHHhhCCEEEEEEECCCCCchhH-HHHHHHHHHc--CCCeEEEEEEeeccCCHHHHHHHHHHHHHHHHHHhCCC
Confidence 76655555677999999999987543222 2222333333 788 5788999999742211 1 122233222
Q ss_pred --CCeEEEeccC---CCCC-------hHHHHHHHHHHHh
Q 030504 146 --NLQYYEISAK---SNYN-------FEKPFLYLARKLA 172 (176)
Q Consensus 146 --~~~~~~~S~~---~~~~-------v~~~~~~l~~~i~ 172 (176)
.++++.+|+. ++.| +.++++.+.+.+.
T Consensus 214 ~~~vpiip~Sa~sa~~g~n~~~~~~~i~~Ll~~l~~~lp 252 (447)
T PLN03127 214 GDEIPIIRGSALSALQGTNDEIGKNAILKLMDAVDEYIP 252 (447)
T ss_pred CCcceEEEeccceeecCCCcccccchHHHHHHHHHHhCC
Confidence 3678888876 4555 6778888776653
|
|
| >PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=7.7e-18 Score=130.34 Aligned_cols=152 Identities=19% Similarity=0.159 Sum_probs=98.1
Q ss_pred CCCCeeEEEEEcCCCCcHHHHHHHHhcCC--CCC------------ccc-----------------cceeEEEeEEEEEe
Q 030504 9 VDYPSFKLVIVGDGGTGKTTFVKRHLTGE--FEK------------KYE-----------------PTIGVEVHPLDFFT 57 (176)
Q Consensus 9 ~~~~~~~i~i~G~~~~GKttl~~~~~~~~--~~~------------~~~-----------------~~~~~~~~~~~~~~ 57 (176)
...+.++|+++|++++|||||+++++... ... ... ...|.+.......+
T Consensus 20 ~~~~~~~i~iiGh~~~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~Tid~~~~~~ 99 (632)
T PRK05506 20 ERKSLLRFITCGSVDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGITIDVAYRYF 99 (632)
T ss_pred cCCCeeEEEEECCCCCChHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCcCceeeeeEE
Confidence 34577999999999999999999987421 110 000 01233444444444
Q ss_pred cCcEEEEEEEeCCCccccccccccccccccEEEEEEeCCChhhhhhHHHHHHHHhhhcCCCCEEEEEeCCCCCcccc--C
Q 030504 58 NCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQV--K 135 (176)
Q Consensus 58 ~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~~~~~--~ 135 (176)
+.....+.++||||++.+.......+..+|++++|+|+..+..-+....+. .+... ...|+++++||+|+.+... .
T Consensus 100 ~~~~~~~~liDtPG~~~f~~~~~~~~~~aD~~llVvda~~g~~~~t~e~~~-~~~~~-~~~~iivvvNK~D~~~~~~~~~ 177 (632)
T PRK05506 100 ATPKRKFIVADTPGHEQYTRNMVTGASTADLAIILVDARKGVLTQTRRHSF-IASLL-GIRHVVLAVNKMDLVDYDQEVF 177 (632)
T ss_pred ccCCceEEEEECCChHHHHHHHHHHHHhCCEEEEEEECCCCccccCHHHHH-HHHHh-CCCeEEEEEEecccccchhHHH
Confidence 555667889999999887655555678999999999998764333333222 22222 2357889999999964111 1
Q ss_pred ----HHHHHHHHHcC---CeEEEeccCCCCChHH
Q 030504 136 ----AKQVTFHRKKN---LQYYEISAKSNYNFEK 162 (176)
Q Consensus 136 ----~~~~~~~~~~~---~~~~~~S~~~~~~v~~ 162 (176)
.+..++.+..+ .+++++||++|.|+.+
T Consensus 178 ~~i~~~i~~~~~~~~~~~~~iipiSA~~g~ni~~ 211 (632)
T PRK05506 178 DEIVADYRAFAAKLGLHDVTFIPISALKGDNVVT 211 (632)
T ss_pred HHHHHHHHHHHHHcCCCCccEEEEecccCCCccc
Confidence 11223334444 4699999999999874
|
|
| >cd01885 EF2 EF2 (for archaea and eukarya) | Back alignment and domain information |
|---|
Probab=99.76 E-value=5.5e-18 Score=114.90 Aligned_cols=113 Identities=19% Similarity=0.239 Sum_probs=78.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCC--CCcc------------ccceeEEEeEE--EEEec--------CcEEEEEEEeCC
Q 030504 15 KLVIVGDGGTGKTTFVKRHLTGEF--EKKY------------EPTIGVEVHPL--DFFTN--------CGKIRFYCWDTA 70 (176)
Q Consensus 15 ~i~i~G~~~~GKttl~~~~~~~~~--~~~~------------~~~~~~~~~~~--~~~~~--------~~~~~~~~~D~~ 70 (176)
+|+++|+.++|||||+.+++...- .... ....|.+.... ....+ ++.+.+.+||||
T Consensus 2 NvaiiGhvd~GKTTL~d~Ll~~~g~i~~~~~g~~~~~D~~~~E~~RgiTi~~~~~~~~~~~~~~~~~~~~~~~i~iiDTP 81 (222)
T cd01885 2 NICIIAHVDHGKTTLSDSLLASAGIISEKLAGKARYMDSREDEQERGITMKSSAISLYFEYEEEDKADGNEYLINLIDSP 81 (222)
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCCCccccCCceeeccCCHHHHHhccccccceEEEEEecCcccccCCCceEEEEECCC
Confidence 799999999999999999874321 1000 00112222211 12222 347889999999
Q ss_pred CccccccccccccccccEEEEEEeCCChhhhhhHHHHHHHHhhhcCCCCEEEEEeCCCCC
Q 030504 71 GQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVK 130 (176)
Q Consensus 71 g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~ 130 (176)
|++.+.......++.+|++++|+|+.++.+.+....+ ..... .+.|+++++||+|+.
T Consensus 82 G~~~f~~~~~~~l~~aD~~ilVvD~~~g~~~~t~~~l-~~~~~--~~~p~ilviNKiD~~ 138 (222)
T cd01885 82 GHVDFSSEVTAALRLCDGALVVVDAVEGVCVQTETVL-RQALK--ERVKPVLVINKIDRL 138 (222)
T ss_pred CccccHHHHHHHHHhcCeeEEEEECCCCCCHHHHHHH-HHHHH--cCCCEEEEEECCCcc
Confidence 9999998888899999999999999987655543322 22222 278999999999976
|
Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco |
| >PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ] | Back alignment and domain information |
|---|
Probab=99.76 E-value=3.4e-18 Score=111.31 Aligned_cols=116 Identities=17% Similarity=0.283 Sum_probs=70.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEe-cCcEEEEEEEeCCCcccccccccc---ccccccEE
Q 030504 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFT-NCGKIRFYCWDTAGQEKFGGLRDG---YYIHGQCA 89 (176)
Q Consensus 14 ~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~D~~g~~~~~~~~~~---~~~~~~~~ 89 (176)
-.|+++|+.|+|||+|..++..+.....+.+... .. .... ......+.++|+|||++.+..... +...+.++
T Consensus 4 ~~vlL~Gps~SGKTaLf~~L~~~~~~~T~tS~e~-n~---~~~~~~~~~~~~~lvD~PGH~rlr~~~~~~~~~~~~~k~I 79 (181)
T PF09439_consen 4 PTVLLVGPSGSGKTALFSQLVNGKTVPTVTSMEN-NI---AYNVNNSKGKKLRLVDIPGHPRLRSKLLDELKYLSNAKGI 79 (181)
T ss_dssp -EEEEE-STTSSHHHHHHHHHHSS---B---SSE-EE---ECCGSSTCGTCECEEEETT-HCCCHHHHHHHHHHGGEEEE
T ss_pred ceEEEEcCCCCCHHHHHHHHhcCCcCCeeccccC-Cc---eEEeecCCCCEEEEEECCCcHHHHHHHHHhhhchhhCCEE
Confidence 4689999999999999999999876555443311 11 1111 223446889999999998764444 47789999
Q ss_pred EEEEeCCC-hhhhhhHHHH-HHHHhhh---cCCCCEEEEEeCCCCCccc
Q 030504 90 IIMFDVTA-RLTYKNVPTW-HRDLCRV---CENIPIVLCGNKVDVKNRQ 133 (176)
Q Consensus 90 i~v~d~~~-~~s~~~~~~~-~~~~~~~---~~~~p~liv~nK~Dl~~~~ 133 (176)
|||+|.+. .........+ +..+... ....|++|+.||+|+....
T Consensus 80 IfvvDSs~~~~~~~~~Ae~Ly~iL~~~~~~~~~~piLIacNK~Dl~~A~ 128 (181)
T PF09439_consen 80 IFVVDSSTDQKELRDVAEYLYDILSDTEVQKNKPPILIACNKQDLFTAK 128 (181)
T ss_dssp EEEEETTTHHHHHHHHHHHHHHHHHHHHCCTT--EEEEEEE-TTSTT--
T ss_pred EEEEeCccchhhHHHHHHHHHHHHHhhhhccCCCCEEEEEeCccccccC
Confidence 99999984 3444444433 3333222 2578999999999987644
|
SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B. |
| >KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.75 E-value=7e-17 Score=111.37 Aligned_cols=153 Identities=15% Similarity=0.144 Sum_probs=100.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCc-EEEEEEEeCCCcccccccccc-------ccccc
Q 030504 15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG-KIRFYCWDTAGQEKFGGLRDG-------YYIHG 86 (176)
Q Consensus 15 ~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~D~~g~~~~~~~~~~-------~~~~~ 86 (176)
.+.++|.|++|||||++++..-+. ...+..-+|.......+... ...+.+=|.||.-+...+.+. .+.++
T Consensus 198 dvGLVG~PNAGKSTLL~als~AKp--kVa~YaFTTL~P~iG~v~yddf~q~tVADiPGiI~GAh~nkGlG~~FLrHiER~ 275 (366)
T KOG1489|consen 198 DVGLVGFPNAGKSTLLNALSRAKP--KVAHYAFTTLRPHIGTVNYDDFSQITVADIPGIIEGAHMNKGLGYKFLRHIERC 275 (366)
T ss_pred ccceecCCCCcHHHHHHHhhccCC--cccccceeeeccccceeeccccceeEeccCccccccccccCcccHHHHHHHHhh
Confidence 488999999999999999775443 11222222333222222212 223888999996544443333 36689
Q ss_pred cEEEEEEeCCCh---hhhhhHHHHHHHH---hhhcCCCCEEEEEeCCCCCccccCHHHHHHHHHcC-CeEEEeccCCCCC
Q 030504 87 QCAIIMFDVTAR---LTYKNVPTWHRDL---CRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKN-LQYYEISAKSNYN 159 (176)
Q Consensus 87 ~~~i~v~d~~~~---~s~~~~~~~~~~~---~~~~~~~p~liv~nK~Dl~~~~~~~~~~~~~~~~~-~~~~~~S~~~~~~ 159 (176)
+..+||+|++.. ..++.+..+...+ .+...++|.++|+||.|++..+.. ...++++... -.++++||++++|
T Consensus 276 ~~l~fVvD~s~~~~~~p~~~~~lL~~ELe~yek~L~~rp~liVaNKiD~~eae~~-~l~~L~~~lq~~~V~pvsA~~~eg 354 (366)
T KOG1489|consen 276 KGLLFVVDLSGKQLRNPWQQLQLLIEELELYEKGLADRPALIVANKIDLPEAEKN-LLSSLAKRLQNPHVVPVSAKSGEG 354 (366)
T ss_pred ceEEEEEECCCcccCCHHHHHHHHHHHHHHHhhhhccCceEEEEeccCchhHHHH-HHHHHHHHcCCCcEEEeeeccccc
Confidence 999999999987 5555555444443 444578999999999999732211 1234555544 3499999999999
Q ss_pred hHHHHHHHHHH
Q 030504 160 FEKPFLYLARK 170 (176)
Q Consensus 160 v~~~~~~l~~~ 170 (176)
+.++++.|.+.
T Consensus 355 l~~ll~~lr~~ 365 (366)
T KOG1489|consen 355 LEELLNGLREL 365 (366)
T ss_pred hHHHHHHHhhc
Confidence 99999887653
|
|
| >cd01852 AIG1 AIG1 (avrRpt2-induced gene 1) | Back alignment and domain information |
|---|
Probab=99.74 E-value=9.8e-17 Score=107.59 Aligned_cols=159 Identities=12% Similarity=0.010 Sum_probs=97.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCcccccc--------c---cccc
Q 030504 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGG--------L---RDGY 82 (176)
Q Consensus 14 ~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~--------~---~~~~ 82 (176)
++|+++|.+|+|||||+|.+++...........+.+..+........+..+.++||||...... + ....
T Consensus 1 ~~i~lvG~~g~GKSsl~N~ilg~~~~~~~~~~~~~T~~~~~~~~~~~~~~i~viDTPG~~d~~~~~~~~~~~i~~~~~~~ 80 (196)
T cd01852 1 LRLVLVGKTGAGKSATGNTILGREVFESKLSASSVTKTCQKESAVWDGRRVNVIDTPGLFDTSVSPEQLSKEIVRCLSLS 80 (196)
T ss_pred CEEEEECCCCCCHHHHHHHhhCCCccccccCCCCcccccceeeEEECCeEEEEEECcCCCCccCChHHHHHHHHHHHHhc
Confidence 4899999999999999999876543222111222333333332223456789999999654321 0 1122
Q ss_pred cccccEEEEEEeCCChhhhhhHHHHHHHHhhhcC---CCCEEEEEeCCCCCccc--------cCHHHHHHHHHcCCeEEE
Q 030504 83 YIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCE---NIPIVLCGNKVDVKNRQ--------VKAKQVTFHRKKNLQYYE 151 (176)
Q Consensus 83 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~---~~p~liv~nK~Dl~~~~--------~~~~~~~~~~~~~~~~~~ 151 (176)
..+.|++++|+++.+ .+- .-...++.+.+.+. -.+++++.|+.|..... .......+.+.++-.++.
T Consensus 81 ~~g~~~illVi~~~~-~t~-~d~~~l~~l~~~fg~~~~~~~ivv~T~~d~l~~~~~~~~~~~~~~~l~~l~~~c~~r~~~ 158 (196)
T cd01852 81 APGPHAFLLVVPLGR-FTE-EEEQAVETLQELFGEKVLDHTIVLFTRGDDLEGGTLEDYLENSCEALKRLLEKCGGRYVA 158 (196)
T ss_pred CCCCEEEEEEEECCC-cCH-HHHHHHHHHHHHhChHhHhcEEEEEECccccCCCcHHHHHHhccHHHHHHHHHhCCeEEE
Confidence 457899999999886 221 11223333333322 36888999999965432 123344566666666655
Q ss_pred ec-----cCCCCChHHHHHHHHHHHhcC
Q 030504 152 IS-----AKSNYNFEKPFLYLARKLAGS 174 (176)
Q Consensus 152 ~S-----~~~~~~v~~~~~~l~~~i~~~ 174 (176)
.+ +..+.+++++++.+.+.+.++
T Consensus 159 f~~~~~~~~~~~q~~~Ll~~i~~~~~~~ 186 (196)
T cd01852 159 FNNKAKGEEQEQQVKELLAKVESMVKEN 186 (196)
T ss_pred EeCCCCcchhHHHHHHHHHHHHHHHHhc
Confidence 55 445778999999998888763
|
This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins). |
| >COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.74 E-value=8.3e-17 Score=118.12 Aligned_cols=154 Identities=16% Similarity=0.178 Sum_probs=111.7
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecC---cEEEEEEEeCCCccccccccccccccccE
Q 030504 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNC---GKIRFYCWDTAGQEKFGGLRDGYYIHGQC 88 (176)
Q Consensus 12 ~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~D~~g~~~~~~~~~~~~~~~~~ 88 (176)
++.=|+++|+...|||||+..+...+.... ..-|+|....-+.+.. ....+.+.|||||+.|..+...-..-+|.
T Consensus 4 R~PvVtimGHVDHGKTtLLD~IR~t~Va~~--EaGGITQhIGA~~v~~~~~~~~~itFiDTPGHeAFt~mRaRGa~vtDI 81 (509)
T COG0532 4 RPPVVTIMGHVDHGKTTLLDKIRKTNVAAG--EAGGITQHIGAYQVPLDVIKIPGITFIDTPGHEAFTAMRARGASVTDI 81 (509)
T ss_pred CCCEEEEeCcccCCccchhhhHhcCccccc--cCCceeeEeeeEEEEeccCCCceEEEEcCCcHHHHHHHHhcCCccccE
Confidence 344588999999999999998766554322 2335666666555543 33578899999999999999998899999
Q ss_pred EEEEEeCCChhhhhhHHHHHHHHhhhcCCCCEEEEEeCCCCCccccCHHHHHHHHH--------cCCeEEEeccCCCCCh
Q 030504 89 AIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRK--------KNLQYYEISAKSNYNF 160 (176)
Q Consensus 89 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~~~~~~~~~~~~~~~--------~~~~~~~~S~~~~~~v 160 (176)
+|+|+++++.-.-+..+. +..... .+.|+++.+||.|..+.+......++... ....++++||++|+|+
T Consensus 82 aILVVa~dDGv~pQTiEA-I~hak~--a~vP~iVAiNKiDk~~~np~~v~~el~~~gl~~E~~gg~v~~VpvSA~tg~Gi 158 (509)
T COG0532 82 AILVVAADDGVMPQTIEA-INHAKA--AGVPIVVAINKIDKPEANPDKVKQELQEYGLVPEEWGGDVIFVPVSAKTGEGI 158 (509)
T ss_pred EEEEEEccCCcchhHHHH-HHHHHH--CCCCEEEEEecccCCCCCHHHHHHHHHHcCCCHhhcCCceEEEEeeccCCCCH
Confidence 999999998754444332 122222 39999999999999865544333332221 1257999999999999
Q ss_pred HHHHHHHHHH
Q 030504 161 EKPFLYLARK 170 (176)
Q Consensus 161 ~~~~~~l~~~ 170 (176)
++++..++..
T Consensus 159 ~eLL~~ill~ 168 (509)
T COG0532 159 DELLELILLL 168 (509)
T ss_pred HHHHHHHHHH
Confidence 9999988764
|
|
| >cd01899 Ygr210 Ygr210 subfamily | Back alignment and domain information |
|---|
Probab=99.73 E-value=2e-16 Score=112.45 Aligned_cols=158 Identities=18% Similarity=0.262 Sum_probs=98.3
Q ss_pred EEEEcCCCCcHHHHHHHHhcCCCC------CccccceeEEEeEEEEE---------------ecC-cEEEEEEEeCCCc-
Q 030504 16 LVIVGDGGTGKTTFVKRHLTGEFE------KKYEPTIGVEVHPLDFF---------------TNC-GKIRFYCWDTAGQ- 72 (176)
Q Consensus 16 i~i~G~~~~GKttl~~~~~~~~~~------~~~~~~~~~~~~~~~~~---------------~~~-~~~~~~~~D~~g~- 72 (176)
|+++|.++||||||++++...... ....|+.|......... .++ ..+.+++||+||.
T Consensus 1 i~ivG~pnvGKStLfn~lt~~~~~~~~~pftT~~p~~g~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~v~i~l~D~aGlv 80 (318)
T cd01899 1 IGLVGKPNAGKSTFFNAATLADVEIANYPFTTIDPNVGVGYVRVECPCKELGVSCNPRYGKCIDGKRYVPVELIDVAGLV 80 (318)
T ss_pred CEEECCCCCCHHHHHHHHhCCCCcccCCCCccccceeEEEEEecCCCchhhhhhhcccccccccCcCcceEEEEECCCCC
Confidence 579999999999999998876542 23345555444321100 112 3468999999997
Q ss_pred ---ccccccccc---ccccccEEEEEEeCCC---------------hh-hhhhH----HHH-------------------
Q 030504 73 ---EKFGGLRDG---YYIHGQCAIIMFDVTA---------------RL-TYKNV----PTW------------------- 107 (176)
Q Consensus 73 ---~~~~~~~~~---~~~~~~~~i~v~d~~~---------------~~-s~~~~----~~~------------------- 107 (176)
+.+..+... .++++|++++|+|+.. |. .++.+ ..|
T Consensus 81 ~ga~~~~glg~~fL~~ir~aD~ii~Vvd~~~~~d~~~~~~~~~~~dp~~d~~~i~~El~~~d~~~~~~~~~~~~~~~~~~ 160 (318)
T cd01899 81 PGAHEGKGLGNKFLDDLRDADALIHVVDASGGTDAEGNGVETGGHDPLEDIEFLENEIDMWIYGILEKNWEKIVRKADAE 160 (318)
T ss_pred CCccchhhHHHHHHHHHHHCCEEEEEEeCCCCcccccccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 333333333 4889999999999973 10 11111 111
Q ss_pred -----------HH----------HHh-h----------------------hcCCCCEEEEEeCCCCCccccCHHHHHHHH
Q 030504 108 -----------HR----------DLC-R----------------------VCENIPIVLCGNKVDVKNRQVKAKQVTFHR 143 (176)
Q Consensus 108 -----------~~----------~~~-~----------------------~~~~~p~liv~nK~Dl~~~~~~~~~~~~~~ 143 (176)
+. .+. + ....+|+++++||.|+.......+ .+..
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~v~~~L~~~~~~~~~~~~~~~~~~~~~~~~llt~KPvI~VlNK~Dl~~~~~~~~--~l~~ 238 (318)
T cd01899 161 KTDIVEALSEQLSGFGVNEKDVIEALEELELPEDLSKWTDEDLLRLARALRKRSKPMVIAANKADIPDAENNIS--KLRL 238 (318)
T ss_pred CccHHHHHHHHHhhccccHHHHHHHHHhCCCCCcccCCCHHHHHHHHHHHHhcCCcEEEEEEHHHccChHHHHH--HHHh
Confidence 00 000 0 012469999999999753322111 1212
Q ss_pred H-cCCeEEEeccCCCCChHHHHH-HHHHHHhcCC
Q 030504 144 K-KNLQYYEISAKSNYNFEKPFL-YLARKLAGST 175 (176)
Q Consensus 144 ~-~~~~~~~~S~~~~~~v~~~~~-~l~~~i~~~~ 175 (176)
. ....++.+||+.+.+++++.+ .+++.+.+.+
T Consensus 239 ~~~~~~iI~iSA~~e~~L~~L~~~~i~~~lPe~~ 272 (318)
T cd01899 239 KYPDEIVVPTSAEAELALRRAAKQGLIKYDPGDS 272 (318)
T ss_pred hCCCCeEEEEeCcccccHHHHHHhhHHHhCCCCC
Confidence 2 346799999999999999998 6988886654
|
Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi. |
| >TIGR00503 prfC peptide chain release factor 3 | Back alignment and domain information |
|---|
Probab=99.73 E-value=5.6e-17 Score=122.41 Aligned_cols=120 Identities=18% Similarity=0.167 Sum_probs=85.3
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHhc-CCCCC-------------------ccccceeEEEeEEEEEecCcEEEEEEEeCC
Q 030504 11 YPSFKLVIVGDGGTGKTTFVKRHLT-GEFEK-------------------KYEPTIGVEVHPLDFFTNCGKIRFYCWDTA 70 (176)
Q Consensus 11 ~~~~~i~i~G~~~~GKttl~~~~~~-~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~ 70 (176)
....+|+|+|++++|||||+++++. +.... ......|++.......++...+.+.+||||
T Consensus 9 ~~~RniaiiGh~~aGKTTL~e~Ll~~~g~i~~~g~v~~~g~~~~t~~D~~~~E~~rgisi~~~~~~~~~~~~~inliDTP 88 (527)
T TIGR00503 9 DKRRTFAIISHPDAGKTTITEKVLLYGGAIQTAGAVKGRGSQRHAKSDWMEMEKQRGISITTSVMQFPYRDCLVNLLDTP 88 (527)
T ss_pred ccCCEEEEEcCCCCCHHHHHHHHHHhCCCccccceeccccccccccCCCCHHHHhcCCcEEEEEEEEeeCCeEEEEEECC
Confidence 3567999999999999999999753 21110 011123455555556667778899999999
Q ss_pred CccccccccccccccccEEEEEEeCCChhhhhhHHHHHHHHhhhcCCCCEEEEEeCCCCCccc
Q 030504 71 GQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQ 133 (176)
Q Consensus 71 g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~~~~ 133 (176)
|+..+.......+..+|++++|+|+++... .....++..... .+.|+++++||+|+....
T Consensus 89 G~~df~~~~~~~l~~aD~aIlVvDa~~gv~-~~t~~l~~~~~~--~~~PiivviNKiD~~~~~ 148 (527)
T TIGR00503 89 GHEDFSEDTYRTLTAVDNCLMVIDAAKGVE-TRTRKLMEVTRL--RDTPIFTFMNKLDRDIRD 148 (527)
T ss_pred ChhhHHHHHHHHHHhCCEEEEEEECCCCCC-HHHHHHHHHHHh--cCCCEEEEEECccccCCC
Confidence 998887766667889999999999987521 122333333333 378999999999987543
|
This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus. |
| >COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.73 E-value=2.6e-16 Score=113.87 Aligned_cols=159 Identities=16% Similarity=0.188 Sum_probs=122.0
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHhc--CCCCC-----------ccccceeEEEeEEEE----Ee-cCcEEEEEEEeCCCcc
Q 030504 12 PSFKLVIVGDGGTGKTTFVKRHLT--GEFEK-----------KYEPTIGVEVHPLDF----FT-NCGKIRFYCWDTAGQE 73 (176)
Q Consensus 12 ~~~~i~i~G~~~~GKttl~~~~~~--~~~~~-----------~~~~~~~~~~~~~~~----~~-~~~~~~~~~~D~~g~~ 73 (176)
...|..|+-+-..|||||..|++. |.... ......|+|.....+ .. ++..+.+.++|||||-
T Consensus 8 ~IRNFsIIAHIDHGKSTLaDRlle~t~~~~~Rem~~Q~LDsMdiERERGITIKaq~v~l~Yk~~~g~~Y~lnlIDTPGHV 87 (603)
T COG0481 8 NIRNFSIIAHIDHGKSTLADRLLELTGGLSEREMRAQVLDSMDIERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHV 87 (603)
T ss_pred hccceEEEEEecCCcchHHHHHHHHhcCcChHHHHHHhhhhhhhHhhcCceEEeeEEEEEEEeCCCCEEEEEEcCCCCcc
Confidence 455788999999999999999874 21110 111123444333322 22 4478999999999999
Q ss_pred ccccccccccccccEEEEEEeCCChhhhhhHHHHHHHHhhhcCCCCEEEEEeCCCCCccccCHHHHHHHHHcCC---eEE
Q 030504 74 KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNL---QYY 150 (176)
Q Consensus 74 ~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~~~~~~~~~~~~~~~~~~---~~~ 150 (176)
.|.-.....+..|.++++|+|++.+-.-+.+...+..+.. +.-++.|+||.||+...+..-..+...-.|+ ..+
T Consensus 88 DFsYEVSRSLAACEGalLvVDAsQGveAQTlAN~YlAle~---~LeIiPViNKIDLP~Adpervk~eIe~~iGid~~dav 164 (603)
T COG0481 88 DFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALEN---NLEIIPVLNKIDLPAADPERVKQEIEDIIGIDASDAV 164 (603)
T ss_pred ceEEEehhhHhhCCCcEEEEECccchHHHHHHHHHHHHHc---CcEEEEeeecccCCCCCHHHHHHHHHHHhCCCcchhe
Confidence 9988888888999999999999998877888777766655 8889999999999987776666666666665 478
Q ss_pred EeccCCCCChHHHHHHHHHHHhc
Q 030504 151 EISAKSNYNFEKPFLYLARKLAG 173 (176)
Q Consensus 151 ~~S~~~~~~v~~~~~~l~~~i~~ 173 (176)
.+||++|.|++++++.+++++.-
T Consensus 165 ~~SAKtG~gI~~iLe~Iv~~iP~ 187 (603)
T COG0481 165 LVSAKTGIGIEDVLEAIVEKIPP 187 (603)
T ss_pred eEecccCCCHHHHHHHHHhhCCC
Confidence 99999999999999999998764
|
|
| >PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=9.6e-17 Score=119.04 Aligned_cols=161 Identities=15% Similarity=0.173 Sum_probs=103.1
Q ss_pred CCCeeEEEEEcCCCCcHHHHHHHHhcCC---CCCcccc----ceeEEEeEE----------EE-EecC------------
Q 030504 10 DYPSFKLVIVGDGGTGKTTFVKRHLTGE---FEKKYEP----TIGVEVHPL----------DF-FTNC------------ 59 (176)
Q Consensus 10 ~~~~~~i~i~G~~~~GKttl~~~~~~~~---~~~~~~~----~~~~~~~~~----------~~-~~~~------------ 59 (176)
..++++|.++|+...|||||+..+..-. +.++... ..|+..... .+ ....
T Consensus 31 ~~~~~~ig~~GHVDhGKTtLv~aLtg~~~~r~~~E~~rGiTi~lGfa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (460)
T PTZ00327 31 RQATINIGTIGHVAHGKSTVVKALSGVKTVRFKREKVRNITIKLGYANAKIYKCPKCPRPTCYQSYGSSKPDNPPCPGCG 110 (460)
T ss_pred CCCcEEEEEEccCCCCHHHHHHHHhCCCcccchhhHHhCCchhccccccccccCcccCCcccccccCCCccccccccccc
Confidence 3578999999999999999999966321 1111111 112221100 00 0000
Q ss_pred ----cEEEEEEEeCCCccccccccccccccccEEEEEEeCCCh-hhhhhHHHHHHHHhhhcCCCCEEEEEeCCCCCcccc
Q 030504 60 ----GKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTAR-LTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQV 134 (176)
Q Consensus 60 ----~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~~~~~ 134 (176)
....+.++|+||++.|.......+..+|++++|+|+..+ ...+...++ . +.....-.|+++++||+|+.+...
T Consensus 111 ~~~~~~~~i~~IDtPGH~~fi~~m~~g~~~~D~alLVVda~~g~~~~qT~ehl-~-i~~~lgi~~iIVvlNKiDlv~~~~ 188 (460)
T PTZ00327 111 HKMTLKRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAANESCPQPQTSEHL-A-AVEIMKLKHIIILQNKIDLVKEAQ 188 (460)
T ss_pred ccccccceEeeeeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCccchhhHHHH-H-HHHHcCCCcEEEEEecccccCHHH
Confidence 023688999999998877767777899999999999974 233333332 2 222222346899999999975322
Q ss_pred CH----HHHHHHHH---cCCeEEEeccCCCCChHHHHHHHHHHHh
Q 030504 135 KA----KQVTFHRK---KNLQYYEISAKSNYNFEKPFLYLARKLA 172 (176)
Q Consensus 135 ~~----~~~~~~~~---~~~~~~~~S~~~~~~v~~~~~~l~~~i~ 172 (176)
.. +..++... ...+++++||++|+|++++++.|...+.
T Consensus 189 ~~~~~~ei~~~l~~~~~~~~~iipVSA~~G~nI~~Ll~~L~~~lp 233 (460)
T PTZ00327 189 AQDQYEEIRNFVKGTIADNAPIIPISAQLKYNIDVVLEYICTQIP 233 (460)
T ss_pred HHHHHHHHHHHHHhhccCCCeEEEeeCCCCCCHHHHHHHHHhhCC
Confidence 21 22233222 3578999999999999999999987654
|
|
| >PRK12739 elongation factor G; Reviewed | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.4e-16 Score=124.34 Aligned_cols=117 Identities=21% Similarity=0.190 Sum_probs=83.5
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHhc--CCCCC--c------------cccceeEEEeEEEEEecCcEEEEEEEeCCCcccc
Q 030504 12 PSFKLVIVGDGGTGKTTFVKRHLT--GEFEK--K------------YEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKF 75 (176)
Q Consensus 12 ~~~~i~i~G~~~~GKttl~~~~~~--~~~~~--~------------~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~ 75 (176)
...||+|+|++++|||||+++++. |.... . .....|++.......+...+..+.++||||+..+
T Consensus 7 ~irni~iiGh~~~GKsTL~~~ll~~~g~~~~~~~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~~f 86 (691)
T PRK12739 7 KTRNIGIMAHIDAGKTTTTERILYYTGKSHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKGHRINIIDTPGHVDF 86 (691)
T ss_pred CeeEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCChhHhhcCCCccceeEEEEECCEEEEEEcCCCHHHH
Confidence 467899999999999999999864 21100 0 0012345555555555556778999999999887
Q ss_pred ccccccccccccEEEEEEeCCChhhhhhHHHHHHHHhhhcCCCCEEEEEeCCCCCc
Q 030504 76 GGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKN 131 (176)
Q Consensus 76 ~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~~ 131 (176)
...+...+..+|++++|+|+.+....+.. ..+..+... +.|.++++||.|+.+
T Consensus 87 ~~e~~~al~~~D~~ilVvDa~~g~~~qt~-~i~~~~~~~--~~p~iv~iNK~D~~~ 139 (691)
T PRK12739 87 TIEVERSLRVLDGAVAVFDAVSGVEPQSE-TVWRQADKY--GVPRIVFVNKMDRIG 139 (691)
T ss_pred HHHHHHHHHHhCeEEEEEeCCCCCCHHHH-HHHHHHHHc--CCCEEEEEECCCCCC
Confidence 77788888999999999999876543332 222333333 789999999999874
|
|
| >COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.6e-16 Score=113.33 Aligned_cols=154 Identities=21% Similarity=0.264 Sum_probs=107.3
Q ss_pred CCCCeeEEEEEcCCCCcHHHHHHHHhc--CCCC---------------------------CccccceeEEEeEEEEEecC
Q 030504 9 VDYPSFKLVIVGDGGTGKTTFVKRHLT--GEFE---------------------------KKYEPTIGVEVHPLDFFTNC 59 (176)
Q Consensus 9 ~~~~~~~i~i~G~~~~GKttl~~~~~~--~~~~---------------------------~~~~~~~~~~~~~~~~~~~~ 59 (176)
..+++++++++|+..+|||||+-+++. |..+ .......|.+.......++.
T Consensus 3 ~~Kph~nl~~iGHVD~GKSTl~GrLly~~G~id~~tmeK~~~ea~~~gK~sf~fawvlD~tkeERerGvTi~~~~~~fet 82 (428)
T COG5256 3 SEKPHLNLVFIGHVDAGKSTLVGRLLYDLGEIDKRTMEKLEKEAKELGKESFKFAWVLDKTKEERERGVTIDVAHSKFET 82 (428)
T ss_pred CCCCceEEEEEcCCCCCchhhhhhhHHHhCCCCHHHHHHHHHHHHhcCCCceEEEEEecCChhHHhcceEEEEEEEEeec
Confidence 356899999999999999999999764 2111 01112346777777777777
Q ss_pred cEEEEEEEeCCCccccccccccccccccEEEEEEeCCChh---hh--hhHHHHHHHHhhhcCCCCEEEEEeCCCCCc-c-
Q 030504 60 GKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARL---TY--KNVPTWHRDLCRVCENIPIVLCGNKVDVKN-R- 132 (176)
Q Consensus 60 ~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~---s~--~~~~~~~~~~~~~~~~~p~liv~nK~Dl~~-~- 132 (176)
..+.++++|+|||..|-...-..+.++|++|+|+|+++.+ +| .........+.....-..+++++||.|+.+ +
T Consensus 83 ~k~~~tIiDaPGHrdFvknmItGasqAD~aVLVV~a~~~efE~g~~~~gQtrEH~~La~tlGi~~lIVavNKMD~v~wde 162 (428)
T COG5256 83 DKYNFTIIDAPGHRDFVKNMITGASQADVAVLVVDARDGEFEAGFGVGGQTREHAFLARTLGIKQLIVAVNKMDLVSWDE 162 (428)
T ss_pred CCceEEEeeCCchHHHHHHhhcchhhccEEEEEEECCCCccccccccCCchhHHHHHHHhcCCceEEEEEEcccccccCH
Confidence 8889999999999998888888889999999999999873 21 111122222222223345788889999975 1
Q ss_pred ----ccCHHHHHHHHHcC-----CeEEEeccCCCCChHH
Q 030504 133 ----QVKAKQVTFHRKKN-----LQYYEISAKSNYNFEK 162 (176)
Q Consensus 133 ----~~~~~~~~~~~~~~-----~~~~~~S~~~~~~v~~ 162 (176)
....+...+.+..| ++|+++|+..|+|+.+
T Consensus 163 ~rf~ei~~~v~~l~k~~G~~~~~v~FIPiSg~~G~Nl~~ 201 (428)
T COG5256 163 ERFEEIVSEVSKLLKMVGYNPKDVPFIPISGFKGDNLTK 201 (428)
T ss_pred HHHHHHHHHHHHHHHHcCCCccCCeEEecccccCCcccc
Confidence 12233334444444 5699999999999854
|
|
| >PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse | Back alignment and domain information |
|---|
Probab=99.71 E-value=9.2e-17 Score=98.94 Aligned_cols=105 Identities=22% Similarity=0.259 Sum_probs=65.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeE--EEEEecCcEEEEEEEeCCCcccccc---------cccccc
Q 030504 15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHP--LDFFTNCGKIRFYCWDTAGQEKFGG---------LRDGYY 83 (176)
Q Consensus 15 ~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~D~~g~~~~~~---------~~~~~~ 83 (176)
+|+++|.+|+|||||+|++++..... .....+.+... ..+.. ....+.++||||...... .....+
T Consensus 1 ~V~iiG~~~~GKSTlin~l~~~~~~~-~~~~~~~T~~~~~~~~~~--~~~~~~~vDtpG~~~~~~~~~~~~~~~~~~~~~ 77 (116)
T PF01926_consen 1 RVAIIGRPNVGKSTLINALTGKKLAK-VSNIPGTTRDPVYGQFEY--NNKKFILVDTPGINDGESQDNDGKEIRKFLEQI 77 (116)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSTSSE-ESSSTTSSSSEEEEEEEE--TTEEEEEEESSSCSSSSHHHHHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHhcccccc-ccccccceeeeeeeeeee--ceeeEEEEeCCCCcccchhhHHHHHHHHHHHHH
Confidence 68999999999999999988643211 11112222222 22223 334457999999643211 122234
Q ss_pred ccccEEEEEEeCCChhhhhhHHHHHHHHhhhcCCCCEEEEEeC
Q 030504 84 IHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNK 126 (176)
Q Consensus 84 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~liv~nK 126 (176)
..+|++++|+|.+++.. +.....+..+. .+.|+++|+||
T Consensus 78 ~~~d~ii~vv~~~~~~~-~~~~~~~~~l~---~~~~~i~v~NK 116 (116)
T PF01926_consen 78 SKSDLIIYVVDASNPIT-EDDKNILRELK---NKKPIILVLNK 116 (116)
T ss_dssp CTESEEEEEEETTSHSH-HHHHHHHHHHH---TTSEEEEEEES
T ss_pred HHCCEEEEEEECCCCCC-HHHHHHHHHHh---cCCCEEEEEcC
Confidence 78899999999877321 22333334442 48999999998
|
These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A .... |
| >KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.5e-16 Score=115.40 Aligned_cols=160 Identities=15% Similarity=0.136 Sum_probs=110.4
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccc-ccc--------ccccc
Q 030504 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK-FGG--------LRDGY 82 (176)
Q Consensus 12 ~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~-~~~--------~~~~~ 82 (176)
..++|+|+|.||+|||||+|.+ .........|..|+|++.....++-.++++.+.||+|..+ ... .....
T Consensus 267 ~gl~iaIvGrPNvGKSSLlNaL-~~~drsIVSpv~GTTRDaiea~v~~~G~~v~L~DTAGiRe~~~~~iE~~gI~rA~k~ 345 (531)
T KOG1191|consen 267 SGLQIAIVGRPNVGKSSLLNAL-SREDRSIVSPVPGTTRDAIEAQVTVNGVPVRLSDTAGIREESNDGIEALGIERARKR 345 (531)
T ss_pred cCCeEEEEcCCCCCHHHHHHHH-hcCCceEeCCCCCcchhhheeEeecCCeEEEEEeccccccccCChhHHHhHHHHHHH
Confidence 4589999999999999999984 4555566788899999999999988999999999999655 111 12223
Q ss_pred cccccEEEEEEeCCCh--hhhhhHHHHHHHHhhhc-------CCCCEEEEEeCCCCCcccc--CHHHHHHHHH----cCC
Q 030504 83 YIHGQCAIIMFDVTAR--LTYKNVPTWHRDLCRVC-------ENIPIVLCGNKVDVKNRQV--KAKQVTFHRK----KNL 147 (176)
Q Consensus 83 ~~~~~~~i~v~d~~~~--~s~~~~~~~~~~~~~~~-------~~~p~liv~nK~Dl~~~~~--~~~~~~~~~~----~~~ 147 (176)
+.++|++++|+|+... ++-..+...+......+ ...|++++.||.|+..... ......+... ..-
T Consensus 346 ~~~advi~~vvda~~~~t~sd~~i~~~l~~~~~g~~~~~~~~~~~~~i~~~nk~D~~s~~~~~~~~~~~~~~~~~~~~~~ 425 (531)
T KOG1191|consen 346 IERADVILLVVDAEESDTESDLKIARILETEGVGLVVIVNKMEKQRIILVANKSDLVSKIPEMTKIPVVYPSAEGRSVFP 425 (531)
T ss_pred HhhcCEEEEEecccccccccchHHHHHHHHhccceEEEeccccccceEEEechhhccCccccccCCceeccccccCcccc
Confidence 6789999999999443 22222222222222111 2479999999999876522 1111111111 122
Q ss_pred eEEEeccCCCCChHHHHHHHHHHHh
Q 030504 148 QYYEISAKSNYNFEKPFLYLARKLA 172 (176)
Q Consensus 148 ~~~~~S~~~~~~v~~~~~~l~~~i~ 172 (176)
...++|+++++|++++...+...+.
T Consensus 426 i~~~vs~~tkeg~~~L~~all~~~~ 450 (531)
T KOG1191|consen 426 IVVEVSCTTKEGCERLSTALLNIVE 450 (531)
T ss_pred eEEEeeechhhhHHHHHHHHHHHHH
Confidence 3566999999999999888877653
|
|
| >COG2262 HflX GTPases [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.71 E-value=6.3e-16 Score=110.35 Aligned_cols=159 Identities=15% Similarity=0.112 Sum_probs=104.1
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCcccc--ccccccc------
Q 030504 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKF--GGLRDGY------ 82 (176)
Q Consensus 11 ~~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~--~~~~~~~------ 82 (176)
.....|.++|-.++|||||.|++.+-.......-....+-........+ +..+.+-||.|.-+. ..+..++
T Consensus 190 ~~~p~vaLvGYTNAGKSTL~N~LT~~~~~~~d~LFATLdpttR~~~l~~-g~~vlLtDTVGFI~~LP~~LV~AFksTLEE 268 (411)
T COG2262 190 SGIPLVALVGYTNAGKSTLFNALTGADVYVADQLFATLDPTTRRIELGD-GRKVLLTDTVGFIRDLPHPLVEAFKSTLEE 268 (411)
T ss_pred cCCCeEEEEeeccccHHHHHHHHhccCeeccccccccccCceeEEEeCC-CceEEEecCccCcccCChHHHHHHHHHHHH
Confidence 3456799999999999999999664332211111111222233333432 456778899994321 1122221
Q ss_pred cccccEEEEEEeCCChhhhhhHHHHHHHHhhh-cCCCCEEEEEeCCCCCccccCHHHHHHHHHcCCeEEEeccCCCCChH
Q 030504 83 YIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV-CENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFE 161 (176)
Q Consensus 83 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~-~~~~p~liv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~ 161 (176)
...+|+++.|+|++++...+.+......+.+. ....|+++|.||.|+..... .........-..+.+||++|.|++
T Consensus 269 ~~~aDlllhVVDaSdp~~~~~~~~v~~vL~el~~~~~p~i~v~NKiD~~~~~~---~~~~~~~~~~~~v~iSA~~~~gl~ 345 (411)
T COG2262 269 VKEADLLLHVVDASDPEILEKLEAVEDVLAEIGADEIPIILVLNKIDLLEDEE---ILAELERGSPNPVFISAKTGEGLD 345 (411)
T ss_pred hhcCCEEEEEeecCChhHHHHHHHHHHHHHHcCCCCCCEEEEEecccccCchh---hhhhhhhcCCCeEEEEeccCcCHH
Confidence 35789999999999997666666665555554 25799999999999765443 112222222258999999999999
Q ss_pred HHHHHHHHHHhc
Q 030504 162 KPFLYLARKLAG 173 (176)
Q Consensus 162 ~~~~~l~~~i~~ 173 (176)
.+.+.|...+..
T Consensus 346 ~L~~~i~~~l~~ 357 (411)
T COG2262 346 LLRERIIELLSG 357 (411)
T ss_pred HHHHHHHHHhhh
Confidence 999999887763
|
|
| >TIGR00484 EF-G translation elongation factor EF-G | Back alignment and domain information |
|---|
Probab=99.71 E-value=2.1e-16 Score=123.44 Aligned_cols=119 Identities=20% Similarity=0.168 Sum_probs=86.1
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHhc--CCCCC--cc------------ccceeEEEeEEEEEecCcEEEEEEEeCCCcccc
Q 030504 12 PSFKLVIVGDGGTGKTTFVKRHLT--GEFEK--KY------------EPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKF 75 (176)
Q Consensus 12 ~~~~i~i~G~~~~GKttl~~~~~~--~~~~~--~~------------~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~ 75 (176)
...||+|+|++++|||||+++++. +.... .. ....|++.......+...+..+.+|||||+..+
T Consensus 9 ~irni~iiG~~~~GKsTL~~~ll~~~g~~~~~~~~~~g~~~~D~~~~e~~rgiti~~~~~~~~~~~~~i~liDTPG~~~~ 88 (689)
T TIGR00484 9 RFRNIGISAHIDAGKTTTTERILFYTGRIHKIGEVHDGAATMDWMEQEKERGITITSAATTVFWKGHRINIIDTPGHVDF 88 (689)
T ss_pred cccEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCCHHHHhcCCCEecceEEEEECCeEEEEEECCCCcch
Confidence 456999999999999999999863 21100 00 012355555555555556788999999999988
Q ss_pred ccccccccccccEEEEEEeCCChhhhhhHHHHHHHHhhhcCCCCEEEEEeCCCCCccc
Q 030504 76 GGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQ 133 (176)
Q Consensus 76 ~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~~~~ 133 (176)
...+...++.+|++++|+|+.+....+... .+..+... +.|+++++||+|+....
T Consensus 89 ~~~~~~~l~~~D~~ilVvda~~g~~~~~~~-~~~~~~~~--~~p~ivviNK~D~~~~~ 143 (689)
T TIGR00484 89 TVEVERSLRVLDGAVAVLDAVGGVQPQSET-VWRQANRY--EVPRIAFVNKMDKTGAN 143 (689)
T ss_pred hHHHHHHHHHhCEEEEEEeCCCCCChhHHH-HHHHHHHc--CCCEEEEEECCCCCCCC
Confidence 777888889999999999999865544333 22333333 78999999999998644
|
After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G. |
| >PRK00007 elongation factor G; Reviewed | Back alignment and domain information |
|---|
Probab=99.69 E-value=8.1e-16 Score=120.15 Aligned_cols=117 Identities=21% Similarity=0.206 Sum_probs=83.1
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHhc--CCCCCc--c------------ccceeEEEeEEEEEecCcEEEEEEEeCCCcccc
Q 030504 12 PSFKLVIVGDGGTGKTTFVKRHLT--GEFEKK--Y------------EPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKF 75 (176)
Q Consensus 12 ~~~~i~i~G~~~~GKttl~~~~~~--~~~~~~--~------------~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~ 75 (176)
...||+|+|++++|||||+++++. |..... . ....|++..............+.++||||+..+
T Consensus 9 ~Irni~iiG~~~~GKsTL~~~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rg~ti~~~~~~~~~~~~~~~liDTPG~~~f 88 (693)
T PRK00007 9 RYRNIGIMAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKDHRINIIDTPGHVDF 88 (693)
T ss_pred ceeEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCcccCCCCHHHHhCCCCEeccEEEEEECCeEEEEEeCCCcHHH
Confidence 456999999999999999999873 321100 0 013355555555555556778999999999877
Q ss_pred ccccccccccccEEEEEEeCCChhhhhhHHHHHHHHhhhcCCCCEEEEEeCCCCCc
Q 030504 76 GGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKN 131 (176)
Q Consensus 76 ~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~~ 131 (176)
.......+..+|++++|+|+......+....| ..+... +.|.++++||.|+.+
T Consensus 89 ~~ev~~al~~~D~~vlVvda~~g~~~qt~~~~-~~~~~~--~~p~iv~vNK~D~~~ 141 (693)
T PRK00007 89 TIEVERSLRVLDGAVAVFDAVGGVEPQSETVW-RQADKY--KVPRIAFVNKMDRTG 141 (693)
T ss_pred HHHHHHHHHHcCEEEEEEECCCCcchhhHHHH-HHHHHc--CCCEEEEEECCCCCC
Confidence 66666677889999999999876544443332 333333 789999999999864
|
|
| >KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.7e-15 Score=111.32 Aligned_cols=154 Identities=17% Similarity=0.140 Sum_probs=110.8
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEE--EecCcEEEEEEEeCCCccccccccccccccccE
Q 030504 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDF--FTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQC 88 (176)
Q Consensus 11 ~~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~ 88 (176)
+++--|.|+|+...|||||+..|.+...- ....-|++....-+ +.+ ++-.+++.|||||..|.+++..-..-+|+
T Consensus 151 ~RpPVVTiMGHVDHGKTTLLD~lRks~VA--A~E~GGITQhIGAF~V~~p-~G~~iTFLDTPGHaAF~aMRaRGA~vtDI 227 (683)
T KOG1145|consen 151 PRPPVVTIMGHVDHGKTTLLDALRKSSVA--AGEAGGITQHIGAFTVTLP-SGKSITFLDTPGHAAFSAMRARGANVTDI 227 (683)
T ss_pred CCCCeEEEeecccCChhhHHHHHhhCcee--hhhcCCccceeceEEEecC-CCCEEEEecCCcHHHHHHHHhccCccccE
Confidence 45556899999999999999986654331 12223445444433 334 45678999999999999999998899999
Q ss_pred EEEEEeCCChhhhhhHHHHHHHHhhhcCCCCEEEEEeCCCCCccccCHHHHHHHH------HcC--CeEEEeccCCCCCh
Q 030504 89 AIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHR------KKN--LQYYEISAKSNYNF 160 (176)
Q Consensus 89 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~~~~~~~~~~~~~~------~~~--~~~~~~S~~~~~~v 160 (176)
+++|+.+.|.-.-+.... +..... .+.|+++.+||+|.+...+..-..++.. ..| .+++++||++|+|+
T Consensus 228 vVLVVAadDGVmpQT~Ea-IkhAk~--A~VpiVvAinKiDkp~a~pekv~~eL~~~gi~~E~~GGdVQvipiSAl~g~nl 304 (683)
T KOG1145|consen 228 VVLVVAADDGVMPQTLEA-IKHAKS--ANVPIVVAINKIDKPGANPEKVKRELLSQGIVVEDLGGDVQVIPISALTGENL 304 (683)
T ss_pred EEEEEEccCCccHhHHHH-HHHHHh--cCCCEEEEEeccCCCCCCHHHHHHHHHHcCccHHHcCCceeEEEeecccCCCh
Confidence 999999998754444321 122222 3999999999999887665444444332 222 67999999999999
Q ss_pred HHHHHHHHHH
Q 030504 161 EKPFLYLARK 170 (176)
Q Consensus 161 ~~~~~~l~~~ 170 (176)
+.+.+.+.-.
T Consensus 305 ~~L~eaill~ 314 (683)
T KOG1145|consen 305 DLLEEAILLL 314 (683)
T ss_pred HHHHHHHHHH
Confidence 9998887654
|
|
| >COG1163 DRG Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.68 E-value=3.6e-15 Score=103.41 Aligned_cols=154 Identities=16% Similarity=0.079 Sum_probs=103.5
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccc-------ccccccc
Q 030504 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFG-------GLRDGYY 83 (176)
Q Consensus 11 ~~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~-------~~~~~~~ 83 (176)
.-...++++|.|++|||||++++. +...+. ....-+|........+.++..+++.|+||.-... ....+..
T Consensus 61 sGda~v~lVGfPsvGKStLL~~LT-nt~sev-a~y~FTTl~~VPG~l~Y~ga~IQild~Pgii~gas~g~grG~~vlsv~ 138 (365)
T COG1163 61 SGDATVALVGFPSVGKSTLLNKLT-NTKSEV-ADYPFTTLEPVPGMLEYKGAQIQLLDLPGIIEGASSGRGRGRQVLSVA 138 (365)
T ss_pred cCCeEEEEEcCCCccHHHHHHHHh-CCCccc-cccCceecccccceEeecCceEEEEcCcccccCcccCCCCcceeeeee
Confidence 345689999999999999999955 433322 2222235555555667788899999999853221 3355678
Q ss_pred ccccEEEEEEeCCChhh-hhhHHHHHHHHhhh----cC------------------------------------------
Q 030504 84 IHGQCAIIMFDVTARLT-YKNVPTWHRDLCRV----CE------------------------------------------ 116 (176)
Q Consensus 84 ~~~~~~i~v~d~~~~~s-~~~~~~~~~~~~~~----~~------------------------------------------ 116 (176)
++||++++|+|+....+ .+.+...++...=. .+
T Consensus 139 R~ADlIiiVld~~~~~~~~~~i~~ELe~~GIrlnk~~p~V~I~kk~~gGI~i~~t~~l~~~d~~~ir~iL~Ey~I~nA~V 218 (365)
T COG1163 139 RNADLIIIVLDVFEDPHHRDIIERELEDVGIRLNKRPPDVTIKKKESGGIRINGTGPLTHLDEDTVRAILREYRIHNADV 218 (365)
T ss_pred ccCCEEEEEEecCCChhHHHHHHHHHHhcCeEecCCCCceEEEEeccCCEEEecccccccCCHHHHHHHHHHhCcccceE
Confidence 99999999999996553 43443333322100 00
Q ss_pred --------------------CCCEEEEEeCCCCCccccCHHHHHHHHHcCCeEEEeccCCCCChHHHHHHHHHHH
Q 030504 117 --------------------NIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171 (176)
Q Consensus 117 --------------------~~p~liv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l~~~i 171 (176)
-+|.+.|.||.|+.... +...+.+.. ..+.+||..+.|++++.+.|-+.+
T Consensus 219 ~Ir~dvTlDd~id~l~~nrvY~p~l~v~NKiD~~~~e---~~~~l~~~~--~~v~isa~~~~nld~L~e~i~~~L 288 (365)
T COG1163 219 LIREDVTLDDLIDALEGNRVYKPALYVVNKIDLPGLE---ELERLARKP--NSVPISAKKGINLDELKERIWDVL 288 (365)
T ss_pred EEecCCcHHHHHHHHhhcceeeeeEEEEecccccCHH---HHHHHHhcc--ceEEEecccCCCHHHHHHHHHHhh
Confidence 12889999999997732 222222222 789999999999999999887764
|
|
| >COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.9e-16 Score=94.79 Aligned_cols=137 Identities=20% Similarity=0.162 Sum_probs=91.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCcc----ccccccccccccccEEE
Q 030504 15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE----KFGGLRDGYYIHGQCAI 90 (176)
Q Consensus 15 ~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~----~~~~~~~~~~~~~~~~i 90 (176)
||+++|..|+|||||.+.+ .|+.. -+..|..+++.. + -..||||.- ++.+-.......+|+++
T Consensus 3 ri~~vG~~gcGKTtL~q~L-~G~~~-lykKTQAve~~d-------~----~~IDTPGEy~~~~~~Y~aL~tt~~dadvi~ 69 (148)
T COG4917 3 RIAFVGQVGCGKTTLFQSL-YGNDT-LYKKTQAVEFND-------K----GDIDTPGEYFEHPRWYHALITTLQDADVII 69 (148)
T ss_pred eeEEecccccCchhHHHHh-hcchh-hhcccceeeccC-------c----cccCCchhhhhhhHHHHHHHHHhhccceee
Confidence 7999999999999999994 44432 123333322211 1 146999832 22222233356789999
Q ss_pred EEEeCCChhhhhhHHHHHHHHhhhcCCCCEEEEEeCCCCCccccCHHHHHHHHHcC-CeEEEeccCCCCChHHHHHHHHH
Q 030504 91 IMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKN-LQYYEISAKSNYNFEKPFLYLAR 169 (176)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~~~~~~~~~~~~~~~~~-~~~~~~S~~~~~~v~~~~~~l~~ 169 (176)
+|-.++++++.-.. .+... -.+|+|-|++|.|+...........+..+-| -++|++|+.++.|+++++..|..
T Consensus 70 ~v~~and~~s~f~p-----~f~~~-~~k~vIgvVTK~DLaed~dI~~~~~~L~eaGa~~IF~~s~~d~~gv~~l~~~L~~ 143 (148)
T COG4917 70 YVHAANDPESRFPP-----GFLDI-GVKKVIGVVTKADLAEDADISLVKRWLREAGAEPIFETSAVDNQGVEELVDYLAS 143 (148)
T ss_pred eeecccCccccCCc-----ccccc-cccceEEEEecccccchHhHHHHHHHHHHcCCcceEEEeccCcccHHHHHHHHHh
Confidence 99999988642211 11111 2567999999999996554455555555655 47999999999999999999875
Q ss_pred H
Q 030504 170 K 170 (176)
Q Consensus 170 ~ 170 (176)
.
T Consensus 144 ~ 144 (148)
T COG4917 144 L 144 (148)
T ss_pred h
Confidence 4
|
|
| >COG3596 Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.67 E-value=7e-16 Score=104.81 Aligned_cols=161 Identities=14% Similarity=0.220 Sum_probs=106.6
Q ss_pred CCCCeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEE-EEecCcEEEEEEEeCCCccc-------cccccc
Q 030504 9 VDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLD-FFTNCGKIRFYCWDTAGQEK-------FGGLRD 80 (176)
Q Consensus 9 ~~~~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~D~~g~~~-------~~~~~~ 80 (176)
...++++|+++|..|+|||||+|+++.|...+...-..+.+..... ..++. -.+.+||+||.+. ++....
T Consensus 35 ~~~~pvnvLi~G~TG~GKSSliNALF~~~~~~v~~vg~~t~~~~~~~~~~~~--~~l~lwDtPG~gdg~~~D~~~r~~~~ 112 (296)
T COG3596 35 TEKEPVNVLLMGATGAGKSSLINALFQGEVKEVSKVGVGTDITTRLRLSYDG--ENLVLWDTPGLGDGKDKDAEHRQLYR 112 (296)
T ss_pred cccCceeEEEecCCCCcHHHHHHHHHhccCceeeecccCCCchhhHHhhccc--cceEEecCCCcccchhhhHHHHHHHH
Confidence 3568899999999999999999999977665432222222222221 12222 4688999999765 455677
Q ss_pred cccccccEEEEEEeCCChhhhhhHHHHHHHHhhhcCCCCEEEEEeCCCCCcc---------ccCHHHHHHHHH-------
Q 030504 81 GYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNR---------QVKAKQVTFHRK------- 144 (176)
Q Consensus 81 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~~~---------~~~~~~~~~~~~------- 144 (176)
.++...|.++++.+..++.---. .+++..+....-..+++++.|.+|.... ........+..+
T Consensus 113 d~l~~~DLvL~l~~~~draL~~d-~~f~~dVi~~~~~~~~i~~VtQ~D~a~p~~~W~~~~~~p~~a~~qfi~~k~~~~~~ 191 (296)
T COG3596 113 DYLPKLDLVLWLIKADDRALGTD-EDFLRDVIILGLDKRVLFVVTQADRAEPGREWDSAGHQPSPAIKQFIEEKAEALGR 191 (296)
T ss_pred HHhhhccEEEEeccCCCccccCC-HHHHHHHHHhccCceeEEEEehhhhhccccccccccCCCCHHHHHHHHHHHHHHHH
Confidence 77888999999999988752222 2344444444345899999999996542 111111111111
Q ss_pred -c--CCeEEEeccCCCCChHHHHHHHHHHHh
Q 030504 145 -K--NLQYYEISAKSNYNFEKPFLYLARKLA 172 (176)
Q Consensus 145 -~--~~~~~~~S~~~~~~v~~~~~~l~~~i~ 172 (176)
. --+++..|...+.|++++...++..+.
T Consensus 192 ~~q~V~pV~~~~~r~~wgl~~l~~ali~~lp 222 (296)
T COG3596 192 LFQEVKPVVAVSGRLPWGLKELVRALITALP 222 (296)
T ss_pred HHhhcCCeEEeccccCccHHHHHHHHHHhCc
Confidence 1 246788888999999999999988764
|
|
| >COG0536 Obg Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.67 E-value=2.4e-15 Score=104.99 Aligned_cols=157 Identities=15% Similarity=0.092 Sum_probs=100.0
Q ss_pred EEEEcCCCCcHHHHHHHHhcCCCCC-ccccceeEEEeEEEEEecCcEEEEEEEeCCCcccccc-------cccccccccc
Q 030504 16 LVIVGDGGTGKTTFVKRHLTGEFEK-KYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGG-------LRDGYYIHGQ 87 (176)
Q Consensus 16 i~i~G~~~~GKttl~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~-------~~~~~~~~~~ 87 (176)
|.++|.|++|||||++.+..-+..- .|..|. ..-....+.. ...-.|.+=|.||.-+..+ .....+.++.
T Consensus 162 VGLVG~PNaGKSTlls~vS~AkPKIadYpFTT-L~PnLGvV~~-~~~~sfv~ADIPGLIEGAs~G~GLG~~FLrHIERt~ 239 (369)
T COG0536 162 VGLVGLPNAGKSTLLSAVSAAKPKIADYPFTT-LVPNLGVVRV-DGGESFVVADIPGLIEGASEGVGLGLRFLRHIERTR 239 (369)
T ss_pred cccccCCCCcHHHHHHHHhhcCCcccCCcccc-ccCcccEEEe-cCCCcEEEecCcccccccccCCCccHHHHHHHHhhh
Confidence 7899999999999999977544321 121111 1111112222 2333578889999543222 2233466889
Q ss_pred EEEEEEeCCChh------hhhhHHHHHHHHhhhcCCCCEEEEEeCCCCCcccc--CHHHHHHHHHcCCeEEE-eccCCCC
Q 030504 88 CAIIMFDVTARL------TYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQV--KAKQVTFHRKKNLQYYE-ISAKSNY 158 (176)
Q Consensus 88 ~~i~v~d~~~~~------s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~-~S~~~~~ 158 (176)
+.+.|+|++..+ .++.+...+........++|.++|+||+|+..... ......+.+..++..+. +|+.+++
T Consensus 240 vL~hviD~s~~~~~dp~~~~~~i~~EL~~Y~~~L~~K~~ivv~NKiD~~~~~e~~~~~~~~l~~~~~~~~~~~ISa~t~~ 319 (369)
T COG0536 240 VLLHVIDLSPIDGRDPIEDYQTIRNELEKYSPKLAEKPRIVVLNKIDLPLDEEELEELKKALAEALGWEVFYLISALTRE 319 (369)
T ss_pred eeEEEEecCcccCCCHHHHHHHHHHHHHHhhHHhccCceEEEEeccCCCcCHHHHHHHHHHHHHhcCCCcceeeehhccc
Confidence 999999998432 44444455555555557999999999999554322 22233444455654333 9999999
Q ss_pred ChHHHHHHHHHHHhcC
Q 030504 159 NFEKPFLYLARKLAGS 174 (176)
Q Consensus 159 ~v~~~~~~l~~~i~~~ 174 (176)
|++++...+.+.+.+.
T Consensus 320 g~~~L~~~~~~~l~~~ 335 (369)
T COG0536 320 GLDELLRALAELLEET 335 (369)
T ss_pred CHHHHHHHHHHHHHHh
Confidence 9999999988877654
|
|
| >PRK12740 elongation factor G; Reviewed | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.3e-15 Score=119.06 Aligned_cols=110 Identities=20% Similarity=0.263 Sum_probs=76.1
Q ss_pred EcCCCCcHHHHHHHHhcC--CCC------Cc--------cccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccccc
Q 030504 19 VGDGGTGKTTFVKRHLTG--EFE------KK--------YEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGY 82 (176)
Q Consensus 19 ~G~~~~GKttl~~~~~~~--~~~------~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~ 82 (176)
+|++++|||||+++++.. ... .. .....|++............+.+.+|||||+..+...+...
T Consensus 1 ig~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~i~liDtPG~~~~~~~~~~~ 80 (668)
T PRK12740 1 VGHSGAGKTTLTEAILFYTGAIHRIGEVEDGTTTMDFMPEERERGISITSAATTCEWKGHKINLIDTPGHVDFTGEVERA 80 (668)
T ss_pred CCCCCCcHHHHHHHHHHhcCCCccCccccCCcccCCCChHHHhcCCCeeeceEEEEECCEEEEEEECCCcHHHHHHHHHH
Confidence 599999999999998532 110 00 00012334444444444567889999999998877777788
Q ss_pred cccccEEEEEEeCCChhhhhhHHHHHHHHhhhcCCCCEEEEEeCCCCCc
Q 030504 83 YIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKN 131 (176)
Q Consensus 83 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~~ 131 (176)
+..+|++++|+|++.....+....| ..+... +.|+++|+||+|+..
T Consensus 81 l~~aD~vllvvd~~~~~~~~~~~~~-~~~~~~--~~p~iiv~NK~D~~~ 126 (668)
T PRK12740 81 LRVLDGAVVVVCAVGGVEPQTETVW-RQAEKY--GVPRIIFVNKMDRAG 126 (668)
T ss_pred HHHhCeEEEEEeCCCCcCHHHHHHH-HHHHHc--CCCEEEEEECCCCCC
Confidence 8999999999999987654443333 333333 789999999999864
|
|
| >KOG0090 consensus Signal recognition particle receptor, beta subunit (small G protein superfamily) [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.9e-15 Score=98.85 Aligned_cols=152 Identities=16% Similarity=0.250 Sum_probs=100.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccccccc---cccEEE
Q 030504 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYI---HGQCAI 90 (176)
Q Consensus 14 ~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~---~~~~~i 90 (176)
-.|+++|+.+||||+|.-++..|.++..+.+ .+-.+........ ...++|.|||.+.+.....++. ++-+++
T Consensus 39 ~~Vll~Gl~dSGKT~LF~qL~~gs~~~TvtS---iepn~a~~r~gs~--~~~LVD~PGH~rlR~kl~e~~~~~~~akaiV 113 (238)
T KOG0090|consen 39 NAVLLVGLSDSGKTSLFTQLITGSHRGTVTS---IEPNEATYRLGSE--NVTLVDLPGHSRLRRKLLEYLKHNYSAKAIV 113 (238)
T ss_pred CcEEEEecCCCCceeeeeehhcCCccCeeee---eccceeeEeecCc--ceEEEeCCCcHHHHHHHHHHccccccceeEE
Confidence 4699999999999999999998866554332 2233333333322 2789999999988766555555 789999
Q ss_pred EEEeCCC-hhhhhhHHHH-HHHHhhh---cCCCCEEEEEeCCCCCccccCHHHH--------HHH--H------------
Q 030504 91 IMFDVTA-RLTYKNVPTW-HRDLCRV---CENIPIVLCGNKVDVKNRQVKAKQV--------TFH--R------------ 143 (176)
Q Consensus 91 ~v~d~~~-~~s~~~~~~~-~~~~~~~---~~~~p~liv~nK~Dl~~~~~~~~~~--------~~~--~------------ 143 (176)
||+|... .........+ +..+... ...+|++++-||.|+......+..+ ..- +
T Consensus 114 FVVDSa~f~k~vrdvaefLydil~~~~~~~~~~~vLIaCNKqDl~tAkt~~~Ir~~LEkEi~~lr~sRsa~~~~~~ed~~ 193 (238)
T KOG0090|consen 114 FVVDSATFLKNVRDVAEFLYDILLDSRVKKNKPPVLIACNKQDLFTAKTAEKIRQQLEKEIHKLRESRSALRSISDEDIA 193 (238)
T ss_pred EEEeccccchhhHHHHHHHHHHHHhhccccCCCCEEEEecchhhhhcCcHHHHHHHHHHHHHHHHHHHhhhhcccccccc
Confidence 9999874 2333333333 3333332 2578899999999986533211110 000 0
Q ss_pred ------------------HcCCeEEEeccCCCCChHHHHHHHHHHH
Q 030504 144 ------------------KKNLQYYEISAKSNYNFEKPFLYLARKL 171 (176)
Q Consensus 144 ------------------~~~~~~~~~S~~~~~~v~~~~~~l~~~i 171 (176)
...+.|.++|++++ +++++-+|+.+.+
T Consensus 194 ~~~tlg~~g~dF~fs~l~~~~V~F~e~S~~~~-~i~~~~~wi~~~l 238 (238)
T KOG0090|consen 194 KDFTLGKEGEDFKFSHLEDQKVTFAEASAKTG-EIDQWESWIREAL 238 (238)
T ss_pred ccccccccccccchhhcccceeEEeecccCcC-ChHHHHHHHHHhC
Confidence 01244788999998 9999999998753
|
|
| >KOG1490 consensus GTP-binding protein CRFG/NOG1 (ODN superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.65 E-value=4.4e-16 Score=113.29 Aligned_cols=168 Identities=15% Similarity=0.125 Sum_probs=118.7
Q ss_pred CCCCCCCCCCeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCcccc----ccc
Q 030504 3 LPSQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKF----GGL 78 (176)
Q Consensus 3 ~~~~~~~~~~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~----~~~ 78 (176)
+++.++.+++.-.++++|-|++|||||++.+..+... ..|...++...+....+.+-..+++.||||.-.. +..
T Consensus 158 l~rlPsIDp~trTlllcG~PNVGKSSf~~~vtradve--vqpYaFTTksL~vGH~dykYlrwQViDTPGILD~plEdrN~ 235 (620)
T KOG1490|consen 158 LSRLPAIDPNTRTLLVCGYPNVGKSSFNNKVTRADDE--VQPYAFTTKLLLVGHLDYKYLRWQVIDTPGILDRPEEDRNI 235 (620)
T ss_pred HhcCCCCCCCcCeEEEecCCCCCcHhhcccccccccc--cCCcccccchhhhhhhhhheeeeeecCCccccCcchhhhhH
Confidence 3456778889999999999999999999986655432 2333333444444455667788999999994221 111
Q ss_pred cc-----cccccccEEEEEEeCCC--hhhhhhHHHHHHHHhhhcCCCCEEEEEeCCCCCc-cccCHHHH----HHHHHcC
Q 030504 79 RD-----GYYIHGQCAIIMFDVTA--RLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKN-RQVKAKQV----TFHRKKN 146 (176)
Q Consensus 79 ~~-----~~~~~~~~~i~v~d~~~--~~s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~~-~~~~~~~~----~~~~~~~ 146 (176)
.. +..+--.+++|+.|++. +.+.....+++..+...+.+.|.++|+||+|+-. +...++.. .+....+
T Consensus 236 IEmqsITALAHLraaVLYfmDLSe~CGySva~QvkLfhsIKpLFaNK~~IlvlNK~D~m~~edL~~~~~~ll~~~~~~~~ 315 (620)
T KOG1490|consen 236 IEMQIITALAHLRSAVLYFMDLSEMCGYSVAAQVKLYHSIKPLFANKVTILVLNKIDAMRPEDLDQKNQELLQTIIDDGN 315 (620)
T ss_pred HHHHHHHHHHHhhhhheeeeechhhhCCCHHHHHHHHHHhHHHhcCCceEEEeecccccCccccCHHHHHHHHHHHhccC
Confidence 11 12223368899999985 4577777788889988889999999999999865 33333332 3333345
Q ss_pred CeEEEeccCCCCChHHHHHHHHHHHh
Q 030504 147 LQYYEISAKSNYNFEKPFLYLARKLA 172 (176)
Q Consensus 147 ~~~~~~S~~~~~~v~~~~~~l~~~i~ 172 (176)
++++++|+.+.+||-++-...+.++.
T Consensus 316 v~v~~tS~~~eegVm~Vrt~ACe~LL 341 (620)
T KOG1490|consen 316 VKVVQTSCVQEEGVMDVRTTACEALL 341 (620)
T ss_pred ceEEEecccchhceeeHHHHHHHHHH
Confidence 89999999999999988877777654
|
|
| >TIGR00490 aEF-2 translation elongation factor aEF-2 | Back alignment and domain information |
|---|
Probab=99.63 E-value=3e-15 Score=117.36 Aligned_cols=117 Identities=24% Similarity=0.185 Sum_probs=80.8
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHhcCC---------------CCCc---cccceeEEEeEEEEEecCcEEEEEEEeCCCcc
Q 030504 12 PSFKLVIVGDGGTGKTTFVKRHLTGE---------------FEKK---YEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73 (176)
Q Consensus 12 ~~~~i~i~G~~~~GKttl~~~~~~~~---------------~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~ 73 (176)
...||+++|+.++|||||+++++... +.+. ...|............++..+.+.+|||||+.
T Consensus 18 ~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~~~~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~i~liDTPG~~ 97 (720)
T TIGR00490 18 FIRNIGIVAHIDHGKTTLSDNLLAGAGMISEELAGQQLYLDFDEQEQERGITINAANVSMVHEYEGNEYLINLIDTPGHV 97 (720)
T ss_pred cccEEEEEEeCCCCHHHHHHHHHHHcCCCchhcCCceeecCCCHHHHhhcchhhcccceeEEeecCCceEEEEEeCCCcc
Confidence 45799999999999999999987421 1110 11122222222223356778899999999999
Q ss_pred ccccccccccccccEEEEEEeCCChhhhhhHHHHHHHHhhhcCCCCEEEEEeCCCCCc
Q 030504 74 KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKN 131 (176)
Q Consensus 74 ~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~~ 131 (176)
.+.......++.+|++++|+|+.+....+....| ..... .+.|.++++||.|...
T Consensus 98 ~f~~~~~~al~~aD~~llVvda~~g~~~~t~~~~-~~~~~--~~~p~ivviNKiD~~~ 152 (720)
T TIGR00490 98 DFGGDVTRAMRAVDGAIVVVCAVEGVMPQTETVL-RQALK--ENVKPVLFINKVDRLI 152 (720)
T ss_pred ccHHHHHHHHHhcCEEEEEEecCCCCCccHHHHH-HHHHH--cCCCEEEEEEChhccc
Confidence 8887777888999999999999875433332222 22222 3778899999999864
|
This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD. |
| >PRK09602 translation-associated GTPase; Reviewed | Back alignment and domain information |
|---|
Probab=99.62 E-value=3.5e-14 Score=103.95 Aligned_cols=83 Identities=23% Similarity=0.360 Sum_probs=53.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCC-cc-----ccceeEEEeEEEE---------------Eec-CcEEEEEEEeCCC
Q 030504 14 FKLVIVGDGGTGKTTFVKRHLTGEFEK-KY-----EPTIGVEVHPLDF---------------FTN-CGKIRFYCWDTAG 71 (176)
Q Consensus 14 ~~i~i~G~~~~GKttl~~~~~~~~~~~-~~-----~~~~~~~~~~~~~---------------~~~-~~~~~~~~~D~~g 71 (176)
++|+++|.|+||||||+|++....... ++ .|+.|........ ..+ .....+++||+||
T Consensus 2 ~kigivG~pnvGKSTlfn~Lt~~~~~~~~y~f~t~~p~~g~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~~~i~i~D~aG 81 (396)
T PRK09602 2 ITIGLVGKPNVGKSTFFNAATLADVEIANYPFTTIDPNVGVAYVRVECPCKELGVKCNPRNGKCIDGTRFIPVELIDVAG 81 (396)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCcccccCCCCcceeeeeeeeeeccCCchhhhhhhhccccccccCCcceeeEEEEEcCC
Confidence 689999999999999999988765532 22 2333332211000 011 1236789999999
Q ss_pred ccc----cccccccc---cccccEEEEEEeCC
Q 030504 72 QEK----FGGLRDGY---YIHGQCAIIMFDVT 96 (176)
Q Consensus 72 ~~~----~~~~~~~~---~~~~~~~i~v~d~~ 96 (176)
... ...+-..+ ++++|++++|+|+.
T Consensus 82 l~~ga~~g~glg~~fL~~ir~ad~ll~Vvd~~ 113 (396)
T PRK09602 82 LVPGAHEGRGLGNQFLDDLRQADALIHVVDAS 113 (396)
T ss_pred cCCCccchhhHHHHHHHHHHHCCEEEEEEeCC
Confidence 532 22233333 78999999999996
|
|
| >cd00066 G-alpha G protein alpha subunit | Back alignment and domain information |
|---|
Probab=99.62 E-value=8.9e-15 Score=104.60 Aligned_cols=115 Identities=17% Similarity=0.163 Sum_probs=82.1
Q ss_pred cEEEEEEEeCCCccccccccccccccccEEEEEEeCCCh----------hhhhhHHHHHHHHhhh--cCCCCEEEEEeCC
Q 030504 60 GKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTAR----------LTYKNVPTWHRDLCRV--CENIPIVLCGNKV 127 (176)
Q Consensus 60 ~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~----------~s~~~~~~~~~~~~~~--~~~~p~liv~nK~ 127 (176)
..+.+.+||++|+...+..|..++.+++++++|+|+++- ..+......+..+... +.+.|+++++||.
T Consensus 159 ~~~~~~~~DvgGq~~~R~kW~~~f~~v~~iifvv~lsd~d~~~~e~~~~nrl~esl~~f~~i~~~~~~~~~pill~~NK~ 238 (317)
T cd00066 159 KNLKFRMFDVGGQRSERKKWIHCFEDVTAIIFVVALSEYDQVLFEDESTNRMQESLNLFDSICNSRWFANTSIILFLNKK 238 (317)
T ss_pred cceEEEEECCCCCcccchhHHHHhCCCCEEEEEEEchhcccccccCCcchHHHHHHHHHHHHHhCccccCCCEEEEccCh
Confidence 457799999999999999999999999999999999974 2333443444444332 3689999999999
Q ss_pred CCCccc------------------cCHHHHHHHHH----------cCCeEEEeccCCCCChHHHHHHHHHHHhcC
Q 030504 128 DVKNRQ------------------VKAKQVTFHRK----------KNLQYYEISAKSNYNFEKPFLYLARKLAGS 174 (176)
Q Consensus 128 Dl~~~~------------------~~~~~~~~~~~----------~~~~~~~~S~~~~~~v~~~~~~l~~~i~~~ 174 (176)
|+..+. ....+..+... ..+..+.++|.+..+++.+|+.+...|.+.
T Consensus 239 D~f~~ki~~~~l~~~fp~y~g~~~~~~~~~~~i~~~F~~~~~~~~~~~~~~~t~a~Dt~~i~~vf~~v~~~i~~~ 313 (317)
T cd00066 239 DLFEEKIKKSPLTDYFPDYTGPPNDYEEAAKFIRKKFLDLNRNPNKEIYPHFTCATDTENIRFVFDAVKDIILQN 313 (317)
T ss_pred HHHHHhhcCCCccccCCCCCCCCCCHHHHHHHHHHHHHHhhcCCCCeEEEEeccccchHHHHHHHHHHHHHHHHH
Confidence 954311 11122222211 235567899999999999999988877653
|
The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute. |
| >PRK13768 GTPase; Provisional | Back alignment and domain information |
|---|
Probab=99.60 E-value=1e-14 Score=101.18 Aligned_cols=111 Identities=14% Similarity=0.159 Sum_probs=72.0
Q ss_pred EEEEEeCCCcccc---cccccccccc-----ccEEEEEEeCCChhhhhhHH--HHHHHHhhhcCCCCEEEEEeCCCCCcc
Q 030504 63 RFYCWDTAGQEKF---GGLRDGYYIH-----GQCAIIMFDVTARLTYKNVP--TWHRDLCRVCENIPIVLCGNKVDVKNR 132 (176)
Q Consensus 63 ~~~~~D~~g~~~~---~~~~~~~~~~-----~~~~i~v~d~~~~~s~~~~~--~~~~~~~~~~~~~p~liv~nK~Dl~~~ 132 (176)
.+.+||+||+.+. +..+..+.+. .+++++|+|+.......... .|+........+.|+++|+||+|+.+.
T Consensus 98 ~~~~~d~~g~~~~~~~~~~~~~~~~~l~~~~~~~ii~liD~~~~~~~~d~~~~~~l~~~~~~~~~~~~i~v~nK~D~~~~ 177 (253)
T PRK13768 98 DYVLVDTPGQMELFAFRESGRKLVERLSGSSKSVVVFLIDAVLAKTPSDFVSLLLLALSVQLRLGLPQIPVLNKADLLSE 177 (253)
T ss_pred CEEEEeCCcHHHHHhhhHHHHHHHHHHHhcCCeEEEEEechHHhCCHHHHHHHHHHHHHHHHHcCCCEEEEEEhHhhcCc
Confidence 5889999997653 2333333222 79999999997644332222 222222222248999999999998764
Q ss_pred ccCHHHHH----------------------------HHHHcC--CeEEEeccCCCCChHHHHHHHHHHHhc
Q 030504 133 QVKAKQVT----------------------------FHRKKN--LQYYEISAKSNYNFEKPFLYLARKLAG 173 (176)
Q Consensus 133 ~~~~~~~~----------------------------~~~~~~--~~~~~~S~~~~~~v~~~~~~l~~~i~~ 173 (176)
....+... ..+..+ .+++++|++++.|++++++++.+.+.-
T Consensus 178 ~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~vi~iSa~~~~gl~~L~~~I~~~l~~ 248 (253)
T PRK13768 178 EELERILKWLEDPEYLLEELKLEKGLQGLLSLELLRALEETGLPVRVIPVSAKTGEGFDELYAAIQEVFCG 248 (253)
T ss_pred hhHHHHHHHHhCHHHHHHHHhcccchHHHHHHHHHHHHHHHCCCCcEEEEECCCCcCHHHHHHHHHHHcCC
Confidence 33222111 122334 578999999999999999999887753
|
|
| >KOG3905 consensus Dynein light intermediate chain [Cell motility] | Back alignment and domain information |
|---|
Probab=99.60 E-value=3.9e-14 Score=98.48 Aligned_cols=160 Identities=18% Similarity=0.265 Sum_probs=111.3
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEe--cCcEEEEEEEeCCCccccccccccccccc--
Q 030504 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFT--NCGKIRFYCWDTAGQEKFGGLRDGYYIHG-- 86 (176)
Q Consensus 11 ~~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~D~~g~~~~~~~~~~~~~~~-- 86 (176)
+..-+|+++|..++|||||+.++.+.. .+.+..|..+....+.- .+....+.+|-..|.--+..+....+...
T Consensus 50 psgk~VlvlGdn~sGKtsLi~klqg~e---~~KkgsgLeY~yl~V~de~RDd~tr~~VWiLDGd~~h~~LLk~al~ats~ 126 (473)
T KOG3905|consen 50 PSGKNVLVLGDNGSGKTSLISKLQGSE---TVKKGSGLEYLYLHVHDEDRDDLTRCNVWILDGDLYHKGLLKFALPATSL 126 (473)
T ss_pred CCCCeEEEEccCCCchhHHHHHhhccc---ccCCCCCcceEEEecccccchhhhhcceEEecCchhhhhHHhhcccccCc
Confidence 345689999999999999999955444 23444555555554433 33456788898888665555444433322
Q ss_pred --cEEEEEEeCCChhhh-hhHHHHHHHHhhhc------------------------------------------------
Q 030504 87 --QCAIIMFDVTARLTY-KNVPTWHRDLCRVC------------------------------------------------ 115 (176)
Q Consensus 87 --~~~i~v~d~~~~~s~-~~~~~~~~~~~~~~------------------------------------------------ 115 (176)
-.+|++.|.+++... +.+.+|...+.+..
T Consensus 127 aetlviltasms~Pw~~lesLqkWa~Vl~ehidkl~i~~ee~ka~rqk~~k~wQeYvep~e~~pgsp~~r~t~~~~~~de 206 (473)
T KOG3905|consen 127 AETLVILTASMSNPWTLLESLQKWASVLREHIDKLKIPPEEMKAGRQKLEKDWQEYVEPGEDQPGSPQRRTTVVGSSADE 206 (473)
T ss_pred cceEEEEEEecCCcHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcCccccCCCCcccccccccCcccc
Confidence 478889999999543 45555654332210
Q ss_pred --------------CCCCEEEEEeCCCC----Ccc---------ccCHHHHHHHHHcCCeEEEeccCCCCChHHHHHHHH
Q 030504 116 --------------ENIPIVLCGNKVDV----KNR---------QVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLA 168 (176)
Q Consensus 116 --------------~~~p~liv~nK~Dl----~~~---------~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l~ 168 (176)
-++|+++|.||||. +.+ ......+++|.++|..++.+|++...|++-+.++|+
T Consensus 207 ~~llPL~~dtLt~NlGi~vlVV~TK~D~~s~leke~eyrDehfdfiq~~lRkFCLr~GaaLiyTSvKE~KNidllyKYiv 286 (473)
T KOG3905|consen 207 HVLLPLGQDTLTHNLGIPVLVVCTKCDAVSVLEKEHEYRDEHFDFIQSHLRKFCLRYGAALIYTSVKETKNIDLLYKYIV 286 (473)
T ss_pred ccccccCCcchhhcCCCcEEEEEeccchhhHhhhcchhhHHHHHHHHHHHHHHHHHcCceeEEeecccccchHHHHHHHH
Confidence 02489999999997 221 123456799999999999999999999999999999
Q ss_pred HHHhc
Q 030504 169 RKLAG 173 (176)
Q Consensus 169 ~~i~~ 173 (176)
++++.
T Consensus 287 hr~yG 291 (473)
T KOG3905|consen 287 HRSYG 291 (473)
T ss_pred HHhcC
Confidence 98764
|
|
| >PRK09866 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.60 E-value=7.5e-14 Score=105.52 Aligned_cols=107 Identities=16% Similarity=0.195 Sum_probs=70.0
Q ss_pred EEEEEeCCCcccc-----ccccccccccccEEEEEEeCCChhhhhhHHHHHHHHhhhcCCCCEEEEEeCCCCCcccc--C
Q 030504 63 RFYCWDTAGQEKF-----GGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQV--K 135 (176)
Q Consensus 63 ~~~~~D~~g~~~~-----~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~~~~~--~ 135 (176)
.+.+.||||.... .......+..+|++++|+|.....+.... .....+.....+.|+++|+||+|+.++.. .
T Consensus 231 QIIFVDTPGIhk~~~~~L~k~M~eqL~eADvVLFVVDat~~~s~~De-eIlk~Lkk~~K~~PVILVVNKIDl~dreeddk 309 (741)
T PRK09866 231 QLTLLDTPGPNEAGQPHLQKMLNQQLARASAVLAVLDYTQLKSISDE-EVREAILAVGQSVPLYVLVNKFDQQDRNSDDA 309 (741)
T ss_pred CEEEEECCCCCCccchHHHHHHHHHHhhCCEEEEEEeCCCCCChhHH-HHHHHHHhcCCCCCEEEEEEcccCCCcccchH
Confidence 5778999997542 11233468899999999999875332221 22333333322369999999999864332 2
Q ss_pred HHHHHHHH----HcC---CeEEEeccCCCCChHHHHHHHHHH
Q 030504 136 AKQVTFHR----KKN---LQYYEISAKSNYNFEKPFLYLARK 170 (176)
Q Consensus 136 ~~~~~~~~----~~~---~~~~~~S~~~~~~v~~~~~~l~~~ 170 (176)
....++.. ... ..+|++||++|.|++++++.+.+.
T Consensus 310 E~Lle~V~~~L~q~~i~f~eIfPVSAlkG~nid~LLdeI~~~ 351 (741)
T PRK09866 310 DQVRALISGTLMKGCITPQQIFPVSSMWGYLANRARHELANN 351 (741)
T ss_pred HHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHHHhC
Confidence 22333322 222 369999999999999999998773
|
|
| >TIGR00157 ribosome small subunit-dependent GTPase A | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.2e-14 Score=100.42 Aligned_cols=95 Identities=15% Similarity=0.108 Sum_probs=78.8
Q ss_pred cccccccccccccccEEEEEEeCCChh-hhhhHHHHHHHHhhhcCCCCEEEEEeCCCCCccccC-HHHHHHHHHcCCeEE
Q 030504 73 EKFGGLRDGYYIHGQCAIIMFDVTARL-TYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVK-AKQVTFHRKKNLQYY 150 (176)
Q Consensus 73 ~~~~~~~~~~~~~~~~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~~~~~~-~~~~~~~~~~~~~~~ 150 (176)
+++..+.+.++.++|++++|+|+.++. +++.+..|+..+.. .+.|+++|+||+||...... .+..+.+...+++++
T Consensus 24 eR~~~L~r~~~~n~D~viiV~d~~~p~~s~~~l~r~l~~~~~--~~i~~vIV~NK~DL~~~~~~~~~~~~~~~~~g~~v~ 101 (245)
T TIGR00157 24 ERKNELTRPIVANIDQIVIVSSAVLPELSLNQLDRFLVVAEA--QNIEPIIVLNKIDLLDDEDMEKEQLDIYRNIGYQVL 101 (245)
T ss_pred cccceEECcccccCCEEEEEEECCCCCCCHHHHHHHHHHHHH--CCCCEEEEEECcccCCCHHHHHHHHHHHHHCCCeEE
Confidence 678888899999999999999999887 88999999876654 48999999999999653322 233455556889999
Q ss_pred EeccCCCCChHHHHHHHHH
Q 030504 151 EISAKSNYNFEKPFLYLAR 169 (176)
Q Consensus 151 ~~S~~~~~~v~~~~~~l~~ 169 (176)
++||++|.|++++|+.+.+
T Consensus 102 ~~SAktg~gi~eLf~~l~~ 120 (245)
T TIGR00157 102 MTSSKNQDGLKELIEALQN 120 (245)
T ss_pred EEecCCchhHHHHHhhhcC
Confidence 9999999999999998764
|
The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option). |
| >KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.59 E-value=7e-15 Score=99.89 Aligned_cols=112 Identities=15% Similarity=0.196 Sum_probs=67.9
Q ss_pred EEEEEEeCCCc-ccccccccccc-----c--cccEEEEEEeCCChhhhhhH-HHHHHHHhhh-cCCCCEEEEEeCCCCCc
Q 030504 62 IRFYCWDTAGQ-EKFGGLRDGYY-----I--HGQCAIIMFDVTARLTYKNV-PTWHRDLCRV-CENIPIVLCGNKVDVKN 131 (176)
Q Consensus 62 ~~~~~~D~~g~-~~~~~~~~~~~-----~--~~~~~i~v~d~~~~~s~~~~-~~~~~~~~~~-~~~~p~liv~nK~Dl~~ 131 (176)
+.+.++||||| |.|.+.....+ . ..-+++||+|.....+-... ..++..+.-. ....|++++.||+|+.+
T Consensus 116 ~~~~liDTPGQIE~FtWSAsGsIIte~lass~ptvv~YvvDt~rs~~p~tFMSNMlYAcSilyktklp~ivvfNK~Dv~d 195 (366)
T KOG1532|consen 116 FDYVLIDTPGQIEAFTWSASGSIITETLASSFPTVVVYVVDTPRSTSPTTFMSNMLYACSILYKTKLPFIVVFNKTDVSD 195 (366)
T ss_pred cCEEEEcCCCceEEEEecCCccchHhhHhhcCCeEEEEEecCCcCCCchhHHHHHHHHHHHHHhccCCeEEEEecccccc
Confidence 56889999997 44544433332 1 23577778886643322111 1222221111 14899999999999987
Q ss_pred cccCHHHH-------HHHH---------------------HcCCeEEEeccCCCCChHHHHHHHHHHHhc
Q 030504 132 RQVKAKQV-------TFHR---------------------KKNLQYYEISAKSNYNFEKPFLYLARKLAG 173 (176)
Q Consensus 132 ~~~~~~~~-------~~~~---------------------~~~~~~~~~S~~~~~~v~~~~~~l~~~i~~ 173 (176)
.....+.+ +... ..++..+.+|+.+|.|++++|..+-+.+.+
T Consensus 196 ~~fa~eWm~DfE~FqeAl~~~~~~y~s~l~~SmSL~leeFY~~lrtv~VSs~tG~G~ddf~~av~~~vdE 265 (366)
T KOG1532|consen 196 SEFALEWMTDFEAFQEALNEAESSYMSNLTRSMSLMLEEFYRSLRTVGVSSVTGEGFDDFFTAVDESVDE 265 (366)
T ss_pred cHHHHHHHHHHHHHHHHHHhhccchhHHhhhhHHHHHHHHHhhCceEEEecccCCcHHHHHHHHHHHHHH
Confidence 54322211 0000 124668999999999999999988776543
|
|
| >smart00275 G_alpha G protein alpha subunit | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.6e-14 Score=104.03 Aligned_cols=114 Identities=16% Similarity=0.154 Sum_probs=81.4
Q ss_pred cEEEEEEEeCCCccccccccccccccccEEEEEEeCCCh----------hhhhhHHHHHHHHhhh--cCCCCEEEEEeCC
Q 030504 60 GKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTAR----------LTYKNVPTWHRDLCRV--CENIPIVLCGNKV 127 (176)
Q Consensus 60 ~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~----------~s~~~~~~~~~~~~~~--~~~~p~liv~nK~ 127 (176)
....+.+||++|+...+..|..++.+++++++|+|+++- ..+......+..+... ..+.|+++++||.
T Consensus 182 ~~~~~~~~DvgGqr~~R~kW~~~f~~v~~IiFvvdlSd~d~~~~Ed~~~nrl~esl~~f~~l~~~~~~~~~piil~~NK~ 261 (342)
T smart00275 182 KKLFFRMFDVGGQRSERKKWIHCFDNVTAIIFCVALSEYDQVLEEDESTNRMQESLNLFESICNSRWFANTSIILFLNKI 261 (342)
T ss_pred CCeEEEEEecCCchhhhhhHHHHhCCCCEEEEEEECcccccchhccCcchHHHHHHHHHHHHHcCccccCCcEEEEEecH
Confidence 446789999999999999999999999999999999963 2344444444444432 3689999999999
Q ss_pred CCCccc-----------------cCHHHHHHHHH-----------cCCeEEEeccCCCCChHHHHHHHHHHHhc
Q 030504 128 DVKNRQ-----------------VKAKQVTFHRK-----------KNLQYYEISAKSNYNFEKPFLYLARKLAG 173 (176)
Q Consensus 128 Dl~~~~-----------------~~~~~~~~~~~-----------~~~~~~~~S~~~~~~v~~~~~~l~~~i~~ 173 (176)
|+..+. .......+.+. ..+..+.++|.+-.++..+|+.+...|.+
T Consensus 262 D~~~~Kl~~~~l~~~fp~y~g~~~~~~~~~yi~~~F~~~~~~~~~r~~y~h~t~a~Dt~~~~~v~~~v~~~I~~ 335 (342)
T smart00275 262 DLFEEKIKKVPLVDYFPDYKGPNDYEAAAKFIKQKFLRLNRNSSRKSIYHHFTCATDTRNIRVVFDAVKDIILQ 335 (342)
T ss_pred HhHHHHhCCCchhccCCCCCCCCCHHHHHHHHHHHHHHhccCCCCceEEEEEeeecccHHHHHHHHHHHHHHHH
Confidence 965311 11122222111 22556778899999999999988777654
|
Subunit of G proteins that contains the guanine nucleotide binding site |
| >PF05783 DLIC: Dynein light intermediate chain (DLIC); InterPro: IPR022780 This entry consists of several eukaryotic dynein light intermediate chain proteins | Back alignment and domain information |
|---|
Probab=99.58 E-value=9.2e-14 Score=103.19 Aligned_cols=165 Identities=21% Similarity=0.274 Sum_probs=114.7
Q ss_pred CCCCCeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEec--CcEEEEEEEeCCCcccccccccccccc
Q 030504 8 TVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTN--CGKIRFYCWDTAGQEKFGGLRDGYYIH 85 (176)
Q Consensus 8 ~~~~~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~D~~g~~~~~~~~~~~~~~ 85 (176)
+..+..-.|+|+|..++|||||+.+|.. .. .+.++.|.+|....+.-+ +....+.+|-..|...+..+....+..
T Consensus 20 ~~~~~~k~vlvlG~~~~GKttli~~L~~-~e--~~~~~~aLeYty~~v~d~~~dd~~rl~vw~L~g~~~~~~LLk~~lt~ 96 (472)
T PF05783_consen 20 TKLPSEKSVLVLGDKGSGKTTLIARLQG-IE--DPKKGLALEYTYLDVKDEDRDDLARLNVWELDGDPSHSDLLKFALTP 96 (472)
T ss_pred ccCCCCceEEEEeCCCCchHHHHHHhhc-cC--CCCCCcccceEEEeeccCcCCcCceeeEEEcCCCcchHhHhcccCCc
Confidence 3445678999999999999999999654 32 344566666666655432 234578999998866666665554442
Q ss_pred ----ccEEEEEEeCCChhhh-hhHHHHHHHHhhh-------------------------------c--------------
Q 030504 86 ----GQCAIIMFDVTARLTY-KNVPTWHRDLCRV-------------------------------C-------------- 115 (176)
Q Consensus 86 ----~~~~i~v~d~~~~~s~-~~~~~~~~~~~~~-------------------------------~-------------- 115 (176)
--.+++|.|.+.|..+ +.+.+|+..+.+. .
T Consensus 97 ~~l~~t~vvIvlDlS~PW~~~esL~~W~~vl~~~i~~L~~~~e~~~e~~~kl~~~~q~Y~ep~~~~~~~s~~~~~~~~~~ 176 (472)
T PF05783_consen 97 ENLPNTLVVIVLDLSKPWNIMESLEKWLSVLREHIEKLKSDPEEREELRQKLERQWQEYVEPGDSSDSGSPNRRSPSSSS 176 (472)
T ss_pred ccccceEEEEEecCCChHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHhhhccccccccCcccccccccc
Confidence 3588999999998644 3343433322110 0
Q ss_pred ------------------CCCCEEEEEeCCCCC----ccc---------cCHHHHHHHHHcCCeEEEeccCCCCChHHHH
Q 030504 116 ------------------ENIPIVLCGNKVDVK----NRQ---------VKAKQVTFHRKKNLQYYEISAKSNYNFEKPF 164 (176)
Q Consensus 116 ------------------~~~p~liv~nK~Dl~----~~~---------~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~ 164 (176)
-++|++||.+|+|.- .+. +.+-.+.+|..+|+.+|.||++...+++.++
T Consensus 177 ~~~~~~~lpl~~g~l~~nlGipi~VV~tksD~~~~Lek~~~~~~e~~DfIqq~LR~~cL~yGAsL~yts~~~~~n~~~L~ 256 (472)
T PF05783_consen 177 SDDESVLLPLGEGVLTENLGIPIVVVCTKSDKIETLEKETDWKEEHFDFIQQYLRTFCLKYGASLIYTSVKEEKNLDLLY 256 (472)
T ss_pred cccccccCCCCCcccccccCcceEEEEecccHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCeEEEeeccccccHHHHH
Confidence 025999999999953 211 1223568889999999999999999999999
Q ss_pred HHHHHHHhcCC
Q 030504 165 LYLARKLAGST 175 (176)
Q Consensus 165 ~~l~~~i~~~~ 175 (176)
.+|.+.++..+
T Consensus 257 ~yi~h~l~~~~ 267 (472)
T PF05783_consen 257 KYILHRLYGFP 267 (472)
T ss_pred HHHHHHhccCC
Confidence 99999887654
|
The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin [, ]. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo []. |
| >COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.5e-13 Score=99.60 Aligned_cols=159 Identities=17% Similarity=0.231 Sum_probs=117.5
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHhc--CCCCCc------------cccceeEEEeEEEEEecCcEEEEEEEeCCCcccccc
Q 030504 12 PSFKLVIVGDGGTGKTTFVKRHLT--GEFEKK------------YEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGG 77 (176)
Q Consensus 12 ~~~~i~i~G~~~~GKttl~~~~~~--~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~ 77 (176)
+-.||+|+-+...|||||+.+++. |.|... .....|++.-.+...+.++++.+.+.|||||..|.-
T Consensus 4 ~iRNIAIIAHVDHGKTTLVD~LLkQSGtf~~~e~v~ERvMDSnDlEkERGITILaKnTav~~~~~~INIvDTPGHADFGG 83 (603)
T COG1217 4 DIRNIAIIAHVDHGKTTLVDALLKQSGTFREREEVAERVMDSNDLEKERGITILAKNTAVNYNGTRINIVDTPGHADFGG 83 (603)
T ss_pred ccceeEEEEEecCCcchHHHHHHhhccccccccchhhhhcCccchhhhcCcEEEeccceeecCCeEEEEecCCCcCCccc
Confidence 456899999999999999999885 333221 122346677777666777889999999999999998
Q ss_pred ccccccccccEEEEEEeCCChhhhhhHHHHHHHHhhhcCCCCEEEEEeCCCCCcccc---CHHHHHHHHH-------cCC
Q 030504 78 LRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQV---KAKQVTFHRK-------KNL 147 (176)
Q Consensus 78 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~~~~~---~~~~~~~~~~-------~~~ 147 (176)
.....+.-.|++++++|+.+...-+.-......+.. +.+-++|.||.|.++... ..+...++.. +.+
T Consensus 84 EVERvl~MVDgvlLlVDA~EGpMPQTrFVlkKAl~~---gL~PIVVvNKiDrp~Arp~~Vvd~vfDLf~~L~A~deQLdF 160 (603)
T COG1217 84 EVERVLSMVDGVLLLVDASEGPMPQTRFVLKKALAL---GLKPIVVINKIDRPDARPDEVVDEVFDLFVELGATDEQLDF 160 (603)
T ss_pred hhhhhhhhcceEEEEEEcccCCCCchhhhHHHHHHc---CCCcEEEEeCCCCCCCCHHHHHHHHHHHHHHhCCChhhCCC
Confidence 888888999999999999987654443333233322 777888899999987554 3344444433 457
Q ss_pred eEEEeccCCCC----------ChHHHHHHHHHHHhc
Q 030504 148 QYYEISAKSNY----------NFEKPFLYLARKLAG 173 (176)
Q Consensus 148 ~~~~~S~~~~~----------~v~~~~~~l~~~i~~ 173 (176)
+++..|++.|. ++.-+|+.|++.+..
T Consensus 161 PivYAS~~~G~a~~~~~~~~~~m~pLfe~I~~hvp~ 196 (603)
T COG1217 161 PIVYASARNGTASLDPEDEADDMAPLFETILDHVPA 196 (603)
T ss_pred cEEEeeccCceeccCccccccchhHHHHHHHHhCCC
Confidence 89999988775 577889998887654
|
|
| >COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.1e-13 Score=97.06 Aligned_cols=149 Identities=20% Similarity=0.235 Sum_probs=106.5
Q ss_pred CCCeeEEEEEcCCCCcHHHHHHHHhcCCC-------------CC------------------ccccceeEEEeEEEEEec
Q 030504 10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEF-------------EK------------------KYEPTIGVEVHPLDFFTN 58 (176)
Q Consensus 10 ~~~~~~i~i~G~~~~GKttl~~~~~~~~~-------------~~------------------~~~~~~~~~~~~~~~~~~ 58 (176)
....+|++.+|+..=|||||+-|++...- .. ......|++.+....++.
T Consensus 3 ~k~lLRfiTcGSVDDGKSTLIGRLL~Dtk~i~eDQla~l~~dS~~~~t~g~~~D~ALLvDGL~AEREQGITIDVAYRyFs 82 (431)
T COG2895 3 HKSLLRFITCGSVDDGKSTLIGRLLYDTKAIYEDQLASLERDSKRKGTQGEKIDLALLVDGLEAEREQGITIDVAYRYFS 82 (431)
T ss_pred cccceeEEEeccccCcchhhhhhhhhcchhhhHHHHHHHhcccccccCCCCccchhhhhhhhHHHHhcCceEEEEeeecc
Confidence 34679999999999999999999876210 00 001123666666666666
Q ss_pred CcEEEEEEEeCCCccccccccccccccccEEEEEEeCCChhhhhhHHH-HHHHHhhhcCCCCEEEEEeCCCCCcc-----
Q 030504 59 CGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPT-WHRDLCRVCENIPIVLCGNKVDVKNR----- 132 (176)
Q Consensus 59 ~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~-~~~~~~~~~~~~p~liv~nK~Dl~~~----- 132 (176)
..+.+|.+-|||||+.|....---...+|++|+++|+...-.-+.-++ ++..+. .=+.+++..||.||.+-
T Consensus 83 T~KRkFIiADTPGHeQYTRNMaTGASTadlAIlLVDAR~Gvl~QTrRHs~I~sLL---GIrhvvvAVNKmDLvdy~e~~F 159 (431)
T COG2895 83 TEKRKFIIADTPGHEQYTRNMATGASTADLAILLVDARKGVLEQTRRHSFIASLL---GIRHVVVAVNKMDLVDYSEEVF 159 (431)
T ss_pred cccceEEEecCCcHHHHhhhhhcccccccEEEEEEecchhhHHHhHHHHHHHHHh---CCcEEEEEEeeecccccCHHHH
Confidence 677889999999999998887777888999999999965433232222 222222 24567888899999872
Q ss_pred -ccCHHHHHHHHHcCC---eEEEeccCCCCChH
Q 030504 133 -QVKAKQVTFHRKKNL---QYYEISAKSNYNFE 161 (176)
Q Consensus 133 -~~~~~~~~~~~~~~~---~~~~~S~~~~~~v~ 161 (176)
....+-..++.+++. .++++||+.|+|+-
T Consensus 160 ~~I~~dy~~fa~~L~~~~~~~IPiSAl~GDNV~ 192 (431)
T COG2895 160 EAIVADYLAFAAQLGLKDVRFIPISALLGDNVV 192 (431)
T ss_pred HHHHHHHHHHHHHcCCCcceEEechhccCCccc
Confidence 234445577888774 69999999999974
|
|
| >TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase) | Back alignment and domain information |
|---|
Probab=99.56 E-value=7.5e-14 Score=97.93 Aligned_cols=121 Identities=12% Similarity=0.098 Sum_probs=70.4
Q ss_pred CCCCeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCcccccccc-------cc
Q 030504 9 VDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLR-------DG 81 (176)
Q Consensus 9 ~~~~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~-------~~ 81 (176)
.+.+.++|+++|.+|+||||++|++++.+... .....+.+...........+..+.++||||........ ..
T Consensus 34 ~~~~~~rIllvGktGVGKSSliNsIlG~~v~~-vs~f~s~t~~~~~~~~~~~G~~l~VIDTPGL~d~~~~~e~~~~~ik~ 112 (313)
T TIGR00991 34 EDVSSLTILVMGKGGVGKSSTVNSIIGERIAT-VSAFQSEGLRPMMVSRTRAGFTLNIIDTPGLIEGGYINDQAVNIIKR 112 (313)
T ss_pred ccccceEEEEECCCCCCHHHHHHHHhCCCccc-ccCCCCcceeEEEEEEEECCeEEEEEECCCCCchHHHHHHHHHHHHH
Confidence 45678999999999999999999988654311 11111111111112222246789999999976532211 11
Q ss_pred cc--ccccEEEEEEeCCChhhhhhHHHHHHHHhhhc---CCCCEEEEEeCCCCC
Q 030504 82 YY--IHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC---ENIPIVLCGNKVDVK 130 (176)
Q Consensus 82 ~~--~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~---~~~p~liv~nK~Dl~ 130 (176)
++ ...|++++|..++.....+.-...++.+...+ --.+.+++.|++|..
T Consensus 113 ~l~~~g~DvVLyV~rLD~~R~~~~DkqlLk~Iqe~FG~~iw~~~IVVfTh~d~~ 166 (313)
T TIGR00991 113 FLLGKTIDVLLYVDRLDAYRVDTLDGQVIRAITDSFGKDIWRKSLVVLTHAQFS 166 (313)
T ss_pred HhhcCCCCEEEEEeccCcccCCHHHHHHHHHHHHHhhhhhhccEEEEEECCccC
Confidence 11 25899999976653221111122333333332 135789999999965
|
|
| >PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria | Back alignment and domain information |
|---|
Probab=99.56 E-value=5.1e-14 Score=95.45 Aligned_cols=159 Identities=11% Similarity=0.047 Sum_probs=90.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccc-------c----ccc
Q 030504 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGL-------R----DGY 82 (176)
Q Consensus 14 ~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~-------~----~~~ 82 (176)
++|+++|..|+||||++|.+++...........+.+..+........+..+.++||||....... . ...
T Consensus 1 l~IlllG~tGsGKSs~~N~ilg~~~f~~~~~~~~~t~~~~~~~~~~~g~~v~VIDTPGl~d~~~~~~~~~~~i~~~l~~~ 80 (212)
T PF04548_consen 1 LRILLLGKTGSGKSSLGNSILGKEVFKSGSSAKSVTQECQKYSGEVDGRQVTVIDTPGLFDSDGSDEEIIREIKRCLSLC 80 (212)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSS-SS--TTTSS--SS-EEEEEEETTEEEEEEE--SSEETTEEHHHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHhcccceeeccccCCcccccceeeeeecceEEEEEeCCCCCCCcccHHHHHHHHHHHHHhc
Confidence 58999999999999999998876654332222222323332222334567889999995322111 1 112
Q ss_pred cccccEEEEEEeCCChhhhhhHHHHHHHHhhhcC---CCCEEEEEeCCCCCccccC---------HHHHHHHHHcCCeEE
Q 030504 83 YIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCE---NIPIVLCGNKVDVKNRQVK---------AKQVTFHRKKNLQYY 150 (176)
Q Consensus 83 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~---~~p~liv~nK~Dl~~~~~~---------~~~~~~~~~~~~~~~ 150 (176)
..+.+++++|+..... +-. -...+..+.+.+. -..++||.|..|....... ....++.+.++-.|+
T Consensus 81 ~~g~ha~llVi~~~r~-t~~-~~~~l~~l~~~FG~~~~k~~ivvfT~~d~~~~~~~~~~l~~~~~~~l~~li~~c~~R~~ 158 (212)
T PF04548_consen 81 SPGPHAFLLVIPLGRF-TEE-DREVLELLQEIFGEEIWKHTIVVFTHADELEDDSLEDYLKKESNEALQELIEKCGGRYH 158 (212)
T ss_dssp TT-ESEEEEEEETTB--SHH-HHHHHHHHHHHHCGGGGGGEEEEEEEGGGGTTTTHHHHHHHHHHHHHHHHHHHTTTCEE
T ss_pred cCCCeEEEEEEecCcc-hHH-HHHHHHHHHHHccHHHHhHhhHHhhhccccccccHHHHHhccCchhHhHHhhhcCCEEE
Confidence 4568999999998832 211 1122233333321 2468888888886543321 123456677787888
Q ss_pred EeccC------CCCChHHHHHHHHHHHhcC
Q 030504 151 EISAK------SNYNFEKPFLYLARKLAGS 174 (176)
Q Consensus 151 ~~S~~------~~~~v~~~~~~l~~~i~~~ 174 (176)
..+.. ....+.++++.+-+.+.++
T Consensus 159 ~f~n~~~~~~~~~~qv~~Ll~~ie~mv~~n 188 (212)
T PF04548_consen 159 VFNNKTKDKEKDESQVSELLEKIEEMVQEN 188 (212)
T ss_dssp ECCTTHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred EEeccccchhhhHHHHHHHHHHHHHHHHHc
Confidence 87776 3346788888877766654
|
The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C .... |
| >TIGR00101 ureG urease accessory protein UreG | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.2e-13 Score=92.52 Aligned_cols=99 Identities=12% Similarity=0.085 Sum_probs=62.6
Q ss_pred EEEEEEeCCCccccccccccccccccEEEEEEeCCChhhhhhHHHHHHHHhhhcCCCCE--EEEEeCCCCCccc--cCHH
Q 030504 62 IRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI--VLCGNKVDVKNRQ--VKAK 137 (176)
Q Consensus 62 ~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~--liv~nK~Dl~~~~--~~~~ 137 (176)
....+.++.|..-....... -++.++.|+|+.+...... .+. ++... ++++||+|+.+.. ....
T Consensus 92 ~D~iiIEt~G~~l~~~~~~~---l~~~~i~vvD~~~~~~~~~--~~~-------~qi~~ad~~~~~k~d~~~~~~~~~~~ 159 (199)
T TIGR00101 92 LEMVFIESGGDNLSATFSPE---LADLTIFVIDVAAGDKIPR--KGG-------PGITRSDLLVINKIDLAPMVGADLGV 159 (199)
T ss_pred CCEEEEECCCCCcccccchh---hhCcEEEEEEcchhhhhhh--hhH-------hHhhhccEEEEEhhhccccccccHHH
Confidence 34556777773211122111 2578999999987654221 111 13334 8889999998531 1222
Q ss_pred HHHHHHH--cCCeEEEeccCCCCChHHHHHHHHHHHh
Q 030504 138 QVTFHRK--KNLQYYEISAKSNYNFEKPFLYLARKLA 172 (176)
Q Consensus 138 ~~~~~~~--~~~~~~~~S~~~~~~v~~~~~~l~~~i~ 172 (176)
..+..+. .+.+++++|+++|+|++++|+|+.+.+.
T Consensus 160 ~~~~~~~~~~~~~i~~~Sa~~g~gi~el~~~i~~~~~ 196 (199)
T TIGR00101 160 MERDAKKMRGEKPFIFTNLKTKEGLDTVIDWIEHYAL 196 (199)
T ss_pred HHHHHHHhCCCCCEEEEECCCCCCHHHHHHHHHhhcC
Confidence 2333333 4579999999999999999999998764
|
This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel. |
| >PRK14845 translation initiation factor IF-2; Provisional | Back alignment and domain information |
|---|
Probab=99.55 E-value=6.6e-14 Score=112.00 Aligned_cols=104 Identities=18% Similarity=0.267 Sum_probs=71.6
Q ss_pred EEEEeCCCccccccccccccccccEEEEEEeCCChhhhhhHHHHHHHHhhhcCCCCEEEEEeCCCCCc-ccc-C------
Q 030504 64 FYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKN-RQV-K------ 135 (176)
Q Consensus 64 ~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~~-~~~-~------ 135 (176)
+.+|||||++.+..+....+..+|++++|+|+++...-+... .+..+... +.|+++++||+|+.. ... .
T Consensus 528 i~fiDTPGhe~F~~lr~~g~~~aDivlLVVDa~~Gi~~qT~e-~I~~lk~~--~iPiIVViNKiDL~~~~~~~~~~~~~~ 604 (1049)
T PRK14845 528 LLFIDTPGHEAFTSLRKRGGSLADLAVLVVDINEGFKPQTIE-AINILRQY--KTPFVVAANKIDLIPGWNISEDEPFLL 604 (1049)
T ss_pred EEEEECCCcHHHHHHHHhhcccCCEEEEEEECcccCCHhHHH-HHHHHHHc--CCCEEEEEECCCCccccccccchhhhh
Confidence 789999999999887777788899999999998742222211 12222332 789999999999853 110 0
Q ss_pred ------HH-HHHH----------HHH---------------cCCeEEEeccCCCCChHHHHHHHHHH
Q 030504 136 ------AK-QVTF----------HRK---------------KNLQYYEISAKSNYNFEKPFLYLARK 170 (176)
Q Consensus 136 ------~~-~~~~----------~~~---------------~~~~~~~~S~~~~~~v~~~~~~l~~~ 170 (176)
+. ..++ ..+ ..++++++||++|+|+++++.++...
T Consensus 605 ~~~~q~~~~~~el~~~l~~v~~~L~~~G~~~e~~~~~~d~~~~v~iVpVSA~tGeGId~Ll~~l~~l 671 (1049)
T PRK14845 605 NFNEQDQHALTELEIKLYELIGKLYELGFDADRFDRVQDFTRTVAIVPVSAKTGEGIPELLMMVAGL 671 (1049)
T ss_pred hhhhhHHHHHHHHHHHHHHHhhHHHhcCcchhhhhhhhhcCCCceEEEEEcCCCCCHHHHHHHHHHh
Confidence 00 0000 111 13579999999999999999988643
|
|
| >smart00010 small_GTPase Small GTPase of the Ras superfamily; ill-defined subfamily | Back alignment and domain information |
|---|
Probab=99.55 E-value=6.2e-15 Score=91.69 Aligned_cols=113 Identities=24% Similarity=0.268 Sum_probs=80.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCccc-cceeEEEeEEEEEecCcEEEEEEEeCCCccccccccccccccccEEEEE
Q 030504 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYE-PTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIM 92 (176)
Q Consensus 14 ~~i~i~G~~~~GKttl~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 92 (176)
+||+++|..|+|||+|+.++..+.+...+. ++.+ +......+.+.++.++.|
T Consensus 1 ~kvv~~G~~gvGKt~l~~~~~~~~~~~~~~~~t~~---------------------------~~~~~~~~~~s~~~~~~v 53 (124)
T smart00010 1 FKVVGIGDSGVGKVGKSARFVQFPFDYVPTVFTIG---------------------------IDVYDPTSYESFDVVLQC 53 (124)
T ss_pred CEEEEECCCChhHHHHHHHHhcCCccccCceehhh---------------------------hhhccccccCCCCEEEEE
Confidence 589999999999999999998787765443 3433 223334456788999999
Q ss_pred EeCCChhhhhhHHHHHHHHhhhc-CCCCEEEEEeCCCCCccccCHHHHHHHHHcCCeEEEeccCCCCChH
Q 030504 93 FDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFE 161 (176)
Q Consensus 93 ~d~~~~~s~~~~~~~~~~~~~~~-~~~p~liv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~ 161 (176)
++..+..+++.+ |...+.... ...|.++++||.|+..... +..+.+..++++|++++.|+.
T Consensus 54 ~~~~~~~s~~~~--~~~~i~~~~k~dl~~~~~~nk~dl~~~~~------~~~~~~~~~~~~s~~~~~~~~ 115 (124)
T smart00010 54 WRVDDRDSADNK--NVPEVLVGNKSDLPILVGGNRDVLEEERQ------VATEEGLEFAETSAKTPEEGE 115 (124)
T ss_pred EEccCHHHHHHH--hHHHHHhcCCCCCcEEEEeechhhHhhCc------CCHHHHHHHHHHhCCCcchhh
Confidence 999999888765 665554433 4678899999999854221 112223356778999999874
|
SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily. |
| >cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts) | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.2e-13 Score=95.30 Aligned_cols=122 Identities=8% Similarity=-0.006 Sum_probs=71.8
Q ss_pred CCCCeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCcccccc---c-------
Q 030504 9 VDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGG---L------- 78 (176)
Q Consensus 9 ~~~~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~---~------- 78 (176)
.....++|+++|.+|+|||||+|++++...... ....+.+...........+..+.++||||...... .
T Consensus 27 ~~~~~~~IllvG~tGvGKSSliNaLlg~~~~~v-~~~~~~T~~~~~~~~~~~g~~i~vIDTPGl~~~~~~~~~~~~~~~~ 105 (249)
T cd01853 27 ELDFSLTILVLGKTGVGKSSTINSIFGERKAAT-SAFQSETLRVREVSGTVDGFKLNIIDTPGLLESVMDQRVNRKILSS 105 (249)
T ss_pred hccCCeEEEEECCCCCcHHHHHHHHhCCCCccc-CCCCCceEEEEEEEEEECCeEEEEEECCCcCcchhhHHHHHHHHHH
Confidence 445789999999999999999999876543222 11111222222223333456789999999764421 0
Q ss_pred cccccc--cccEEEEEEeCCChhhhhhHHHHHHHHhhhcC---CCCEEEEEeCCCCCc
Q 030504 79 RDGYYI--HGQCAIIMFDVTARLTYKNVPTWHRDLCRVCE---NIPIVLCGNKVDVKN 131 (176)
Q Consensus 79 ~~~~~~--~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~---~~p~liv~nK~Dl~~ 131 (176)
...++. ..+++++|..++....-..-...++.+.+.+. -.++++|.||+|...
T Consensus 106 I~~~l~~~~idvIL~V~rlD~~r~~~~d~~llk~I~e~fG~~i~~~~ivV~T~~d~~~ 163 (249)
T cd01853 106 IKRYLKKKTPDVVLYVDRLDMYRRDYLDLPLLRAITDSFGPSIWRNAIVVLTHAASSP 163 (249)
T ss_pred HHHHHhccCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhChhhHhCEEEEEeCCccCC
Confidence 111222 56888888766643211111233334433322 257999999999754
|
This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon. |
| >KOG0458 consensus Elongation factor 1 alpha [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.52 E-value=4.8e-13 Score=99.19 Aligned_cols=155 Identities=20% Similarity=0.212 Sum_probs=108.7
Q ss_pred CCCCCeeEEEEEcCCCCcHHHHHHHHhc--------------------CCCC---------CccccceeEEEeEEEEEec
Q 030504 8 TVDYPSFKLVIVGDGGTGKTTFVKRHLT--------------------GEFE---------KKYEPTIGVEVHPLDFFTN 58 (176)
Q Consensus 8 ~~~~~~~~i~i~G~~~~GKttl~~~~~~--------------------~~~~---------~~~~~~~~~~~~~~~~~~~ 58 (176)
..+...++++++|+..+|||||+.+++. |... .......|++-......++
T Consensus 172 ~~~k~~l~lvv~GhVdaGKSTLmG~lLydLg~i~~~~m~kl~~es~~~Gk~Sf~yawiLDeT~eERerGvTm~v~~~~fe 251 (603)
T KOG0458|consen 172 SDPKDHLNLVVLGHVDAGKSTLMGHLLYDLGEISSRSMHKLERESKNLGKSSFAYAWILDETKEERERGVTMDVKTTWFE 251 (603)
T ss_pred cCCccceEEEEEeccccchhhhhhHHHHHhcCccHHHHHHHHHHHHhcCCcceeeeEEeccchhhhhcceeEEeeeEEEe
Confidence 4455789999999999999999999765 1111 1122334677777777777
Q ss_pred CcEEEEEEEeCCCccccccccccccccccEEEEEEeCCChh---hhhh--HHHHHHHHhhhcCCCCEEEEEeCCCCCc-c
Q 030504 59 CGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARL---TYKN--VPTWHRDLCRVCENIPIVLCGNKVDVKN-R 132 (176)
Q Consensus 59 ~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~---s~~~--~~~~~~~~~~~~~~~p~liv~nK~Dl~~-~ 132 (176)
.....+++.|.|||..|......-..++|++++|+|++... +|+. ....+..+.+...-.-+++++||.|+.+ .
T Consensus 252 s~~~~~tliDaPGhkdFi~nmi~g~sqaD~avLvvd~s~~~FE~gfd~~gQtrEha~llr~Lgi~qlivaiNKmD~V~Ws 331 (603)
T KOG0458|consen 252 SKSKIVTLIDAPGHKDFIPNMISGASQADVAVLVVDASTGEFESGFDPGGQTREHALLLRSLGISQLIVAINKMDLVSWS 331 (603)
T ss_pred cCceeEEEecCCCccccchhhhccccccceEEEEEECCcchhhhccCCCCchHHHHHHHHHcCcceEEEEeecccccCcc
Confidence 78889999999999999888888889999999999998642 3321 1122233333333455788899999875 1
Q ss_pred -----ccCHHHHHHH-HHcC-----CeEEEeccCCCCChHH
Q 030504 133 -----QVKAKQVTFH-RKKN-----LQYYEISAKSNYNFEK 162 (176)
Q Consensus 133 -----~~~~~~~~~~-~~~~-----~~~~~~S~~~~~~v~~ 162 (176)
........+. +..| +.|++||..+|+|+-.
T Consensus 332 q~RF~eIk~~l~~fL~~~~gf~es~v~FIPiSGl~GeNL~k 372 (603)
T KOG0458|consen 332 QDRFEEIKNKLSSFLKESCGFKESSVKFIPISGLSGENLIK 372 (603)
T ss_pred HHHHHHHHHHHHHHHHHhcCcccCCcceEecccccCCcccc
Confidence 2223334555 4444 4799999999999743
|
|
| >PLN00116 translation elongation factor EF-2 subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.51 E-value=6.4e-14 Score=111.55 Aligned_cols=117 Identities=13% Similarity=0.139 Sum_probs=80.9
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHhcCCCC--C---------cccc---ceeEEEeEE--EEEe--------------cCc
Q 030504 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFE--K---------KYEP---TIGVEVHPL--DFFT--------------NCG 60 (176)
Q Consensus 11 ~~~~~i~i~G~~~~GKttl~~~~~~~~~~--~---------~~~~---~~~~~~~~~--~~~~--------------~~~ 60 (176)
....||+|+|+.++|||||+.+++...-. . .+.+ ..|.+.... .... +..
T Consensus 17 ~~Irni~iiGhvd~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (843)
T PLN00116 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDESLKDFKGERDGN 96 (843)
T ss_pred cCccEEEEEcCCCCCHHHHHHHHHHhcCCcccccCCceeeccCcHHHHHhCCceecceeEEEeecccccccccccccCCC
Confidence 35679999999999999999998753210 0 0000 112222211 1111 223
Q ss_pred EEEEEEEeCCCccccccccccccccccEEEEEEeCCChhhhhhHHHHHHHHhhhcCCCCEEEEEeCCCCC
Q 030504 61 KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVK 130 (176)
Q Consensus 61 ~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~ 130 (176)
.+.+.++|||||..|.......++.+|++|+|+|+..+...+....|. .+... ++|+++++||.|..
T Consensus 97 ~~~inliDtPGh~dF~~e~~~al~~~D~ailVvda~~Gv~~~t~~~~~-~~~~~--~~p~i~~iNK~D~~ 163 (843)
T PLN00116 97 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLR-QALGE--RIRPVLTVNKMDRC 163 (843)
T ss_pred ceEEEEECCCCHHHHHHHHHHHHhhcCEEEEEEECCCCCcccHHHHHH-HHHHC--CCCEEEEEECCccc
Confidence 677899999999999888888889999999999999876555444443 33333 89999999999987
|
|
| >PTZ00416 elongation factor 2; Provisional | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.5e-13 Score=109.23 Aligned_cols=116 Identities=16% Similarity=0.190 Sum_probs=79.1
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHhcC--CCCCcc------------ccceeEEEeEE--EEEec--------CcEEEEEEE
Q 030504 12 PSFKLVIVGDGGTGKTTFVKRHLTG--EFEKKY------------EPTIGVEVHPL--DFFTN--------CGKIRFYCW 67 (176)
Q Consensus 12 ~~~~i~i~G~~~~GKttl~~~~~~~--~~~~~~------------~~~~~~~~~~~--~~~~~--------~~~~~~~~~ 67 (176)
...||+++|+.++|||||+++++.. ...... ....|++.... ..... .+...+.++
T Consensus 18 ~irni~iiGh~d~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~i~li 97 (836)
T PTZ00416 18 QIRNMSVIAHVDHGKSTLTDSLVCKAGIISSKNAGDARFTDTRADEQERGITIKSTGISLYYEHDLEDGDDKQPFLINLI 97 (836)
T ss_pred CcCEEEEECCCCCCHHHHHHHHHHhcCCcccccCCceeecccchhhHhhcceeeccceEEEeecccccccCCCceEEEEE
Confidence 4569999999999999999998752 111000 00112222211 11221 235678999
Q ss_pred eCCCccccccccccccccccEEEEEEeCCChhhhhhHHHHHHHHhhhcCCCCEEEEEeCCCCC
Q 030504 68 DTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVK 130 (176)
Q Consensus 68 D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~ 130 (176)
||||+.++.......++.+|++++|+|+.++...+....| ..+... +.|+++++||+|+.
T Consensus 98 DtPG~~~f~~~~~~al~~~D~ailVvda~~g~~~~t~~~~-~~~~~~--~~p~iv~iNK~D~~ 157 (836)
T PTZ00416 98 DSPGHVDFSSEVTAALRVTDGALVVVDCVEGVCVQTETVL-RQALQE--RIRPVLFINKVDRA 157 (836)
T ss_pred cCCCHHhHHHHHHHHHhcCCeEEEEEECCCCcCccHHHHH-HHHHHc--CCCEEEEEEChhhh
Confidence 9999998877777788999999999999986544443333 344433 78999999999987
|
|
| >KOG0461 consensus Selenocysteine-specific elongation factor [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.6e-12 Score=91.25 Aligned_cols=161 Identities=17% Similarity=0.128 Sum_probs=103.6
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHhcC----CCCCc-cccceeEEEeEE--EEE------e-cCcEEEEEEEeCCCccccc
Q 030504 11 YPSFKLVIVGDGGTGKTTFVKRHLTG----EFEKK-YEPTIGVEVHPL--DFF------T-NCGKIRFYCWDTAGQEKFG 76 (176)
Q Consensus 11 ~~~~~i~i~G~~~~GKttl~~~~~~~----~~~~~-~~~~~~~~~~~~--~~~------~-~~~~~~~~~~D~~g~~~~~ 76 (176)
+..+|+.++|+..+|||||.+++..- -|+.. .+.+.|.+.+.. ... . .+....|.+.|.|||...-
T Consensus 5 p~n~N~GiLGHvDSGKTtLarals~~~STaAFDk~pqS~eRgiTLDLGFS~~~v~~parLpq~e~lq~tlvDCPGHasLI 84 (522)
T KOG0461|consen 5 PSNLNLGILGHVDSGKTTLARALSELGSTAAFDKHPQSTERGITLDLGFSTMTVLSPARLPQGEQLQFTLVDCPGHASLI 84 (522)
T ss_pred CceeeeeeEeeccCchHHHHHHHHhhccchhhccCCcccccceeEeecceeeecccccccCccccceeEEEeCCCcHHHH
Confidence 35699999999999999999997642 22222 122233333322 111 1 2345788999999998655
Q ss_pred cccccccccccEEEEEEeCCChhhhhhHHHHHHHHhhhcCCCCEEEEEeCCCCCccccCHH-HHHHH-------HH----
Q 030504 77 GLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAK-QVTFH-------RK---- 144 (176)
Q Consensus 77 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~~~~~~~~-~~~~~-------~~---- 144 (176)
...-....-.|..++|+|+.....-+.++.++ +.+. --...++|+||.|+..++.... ..+.. +.
T Consensus 85 RtiiggaqiiDlm~lviDv~kG~QtQtAEcLi--ig~~-~c~klvvvinkid~lpE~qr~ski~k~~kk~~KtLe~t~f~ 161 (522)
T KOG0461|consen 85 RTIIGGAQIIDLMILVIDVQKGKQTQTAECLI--IGEL-LCKKLVVVINKIDVLPENQRASKIEKSAKKVRKTLESTGFD 161 (522)
T ss_pred HHHHhhhheeeeeeEEEehhcccccccchhhh--hhhh-hccceEEEEeccccccchhhhhHHHHHHHHHHHHHHhcCcC
Confidence 44445555679999999999877666665432 2222 1345677788888765432221 11111 11
Q ss_pred cCCeEEEeccCCC----CChHHHHHHHHHHHhcC
Q 030504 145 KNLQYYEISAKSN----YNFEKPFLYLARKLAGS 174 (176)
Q Consensus 145 ~~~~~~~~S~~~~----~~v~~~~~~l~~~i~~~ 174 (176)
.+.+++++|++.| +++.|+.+.|-.++.+.
T Consensus 162 g~~PI~~vsa~~G~~~~~~i~eL~e~l~s~if~P 195 (522)
T KOG0461|consen 162 GNSPIVEVSAADGYFKEEMIQELKEALESRIFEP 195 (522)
T ss_pred CCCceeEEecCCCccchhHHHHHHHHHHHhhcCC
Confidence 1378999999999 78888888888887754
|
|
| >KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.49 E-value=2.6e-12 Score=95.43 Aligned_cols=159 Identities=15% Similarity=0.173 Sum_probs=110.9
Q ss_pred CCCeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccccccccccEE
Q 030504 10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCA 89 (176)
Q Consensus 10 ~~~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~ 89 (176)
+.+-+.+.++|+.++|||.+++.|+++.+...+..+....+..-.+...+....+.+-|.+-. ........- ..+|++
T Consensus 422 ~R~Vf~C~V~G~k~~GKs~lL~sflgr~~~~~~~~~~~~~~avn~v~~~g~~k~LiL~ei~~~-~~~~l~~ke-~~cDv~ 499 (625)
T KOG1707|consen 422 DRKVFQCFVVGPKNCGKSALLQSFLGRSMSDNNTGTTKPRYAVNSVEVKGQQKYLILREIGED-DQDFLTSKE-AACDVA 499 (625)
T ss_pred cceeeeEEEEcCCcCchHHHHHHHhccccccccccCCCCceeeeeeeeccccceEEEeecCcc-ccccccCcc-ceeeeE
Confidence 346788999999999999999999987776554444433333333333345445666676644 222221211 678999
Q ss_pred EEEEeCCChhhhhhHHHHHHHHhhhcCCCCEEEEEeCCCCCccc--cCHHHHHHHHHcCC-eEEEeccCCCCChHHHHHH
Q 030504 90 IIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQ--VKAKQVTFHRKKNL-QYYEISAKSNYNFEKPFLY 166 (176)
Q Consensus 90 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~~~~--~~~~~~~~~~~~~~-~~~~~S~~~~~~v~~~~~~ 166 (176)
+++||.+++.+|......++.-... ...|+++|++|+|+.... ...+..++++++++ +.+..|++.... .++|..
T Consensus 500 ~~~YDsS~p~sf~~~a~v~~~~~~~-~~~Pc~~va~K~dlDe~~Q~~~iqpde~~~~~~i~~P~~~S~~~~~s-~~lf~k 577 (625)
T KOG1707|consen 500 CLVYDSSNPRSFEYLAEVYNKYFDL-YKIPCLMVATKADLDEVPQRYSIQPDEFCRQLGLPPPIHISSKTLSS-NELFIK 577 (625)
T ss_pred EEecccCCchHHHHHHHHHHHhhhc-cCCceEEEeeccccchhhhccCCChHHHHHhcCCCCCeeeccCCCCC-chHHHH
Confidence 9999999999998887655444333 689999999999997633 33334899999997 467778775333 899999
Q ss_pred HHHHHh
Q 030504 167 LARKLA 172 (176)
Q Consensus 167 l~~~i~ 172 (176)
|+.+.+
T Consensus 578 L~~~A~ 583 (625)
T KOG1707|consen 578 LATMAQ 583 (625)
T ss_pred HHHhhh
Confidence 887654
|
|
| >COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.47 E-value=3.6e-13 Score=96.96 Aligned_cols=133 Identities=18% Similarity=0.169 Sum_probs=97.9
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHhc-CCCC-----------C--------ccccceeEEEeEEEEEecCcEEEEEEEeCCC
Q 030504 12 PSFKLVIVGDGGTGKTTFVKRHLT-GEFE-----------K--------KYEPTIGVEVHPLDFFTNCGKIRFYCWDTAG 71 (176)
Q Consensus 12 ~~~~i~i~G~~~~GKttl~~~~~~-~~~~-----------~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g 71 (176)
+....+|+-+|.+|||||..+++. |... . +.....|++..+....++..+..+.+.||||
T Consensus 11 rRRTFAIISHPDAGKTTlTEkLLlfGgaIq~AG~Vk~rk~~~~a~SDWM~iEkqRGISVtsSVMqF~Y~~~~iNLLDTPG 90 (528)
T COG4108 11 RRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGKHAKSDWMEIEKQRGISVTSSVMQFDYADCLVNLLDTPG 90 (528)
T ss_pred hhcceeEEecCCCCcccHHHHHHHhcchhhhcceeeeccCCcccccHHHHHHHhcCceEEeeEEEeccCCeEEeccCCCC
Confidence 345689999999999999999763 2110 0 0111236677777777788888899999999
Q ss_pred ccccccccccccccccEEEEEEeCCChhhhhhHHHHHHHHhhhcCCCCEEEEEeCCCCCccccCHHHHHHHHHcCC
Q 030504 72 QEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNL 147 (176)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~~~~~~~~~~~~~~~~~~ 147 (176)
|+.|.......+..+|.+++|+|+..+-.-+ ..++++.+.-+ +.|++=++||.|...+.+-+-..+..+.+++
T Consensus 91 HeDFSEDTYRtLtAvDsAvMVIDaAKGiE~q-T~KLfeVcrlR--~iPI~TFiNKlDR~~rdP~ELLdEiE~~L~i 163 (528)
T COG4108 91 HEDFSEDTYRTLTAVDSAVMVIDAAKGIEPQ-TLKLFEVCRLR--DIPIFTFINKLDREGRDPLELLDEIEEELGI 163 (528)
T ss_pred ccccchhHHHHHHhhheeeEEEecccCccHH-HHHHHHHHhhc--CCceEEEeeccccccCChHHHHHHHHHHhCc
Confidence 9999998888899999999999998654322 23444555444 9999999999999887776655555555543
|
|
| >TIGR00073 hypB hydrogenase accessory protein HypB | Back alignment and domain information |
|---|
Probab=99.47 E-value=1.5e-12 Score=88.11 Aligned_cols=150 Identities=14% Similarity=0.141 Sum_probs=82.5
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHhcC--C-CC---------Ccccc----ceeEE-----EeEEEE-----------Eec
Q 030504 11 YPSFKLVIVGDGGTGKTTFVKRHLTG--E-FE---------KKYEP----TIGVE-----VHPLDF-----------FTN 58 (176)
Q Consensus 11 ~~~~~i~i~G~~~~GKttl~~~~~~~--~-~~---------~~~~~----~~~~~-----~~~~~~-----------~~~ 58 (176)
.....|.++|..|+|||||+++++.. . .. ..... ..|.. ..+... ...
T Consensus 20 ~~~~~i~~~G~~gsGKTTli~~l~~~~~~~~~v~v~~~~~~~~~D~~~~~~~~~~~~~l~~gcic~~~~~~~~~~l~~~~ 99 (207)
T TIGR00073 20 HGLVVLNFMSSPGSGKTTLIEKLIDNLKDEVKIAVIEGDVITKFDAERLRKYGAPAIQINTGKECHLDAHMVAHALEDLP 99 (207)
T ss_pred cCcEEEEEECCCCCCHHHHHHHHHHHHhcCCeEEEEECCCCCcccHHHHHHcCCcEEEEcCCCcccCChHHHHHHHHHhc
Confidence 35678999999999999999997642 1 00 00000 00000 000000 000
Q ss_pred CcEEEEEEEeCCCccccccccccccccccEEEEEEeCCChhhhhhHHHHHHHHhhhcCCCCEEEEEeCCCCCcccc--CH
Q 030504 59 CGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQV--KA 136 (176)
Q Consensus 59 ~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~~~~~--~~ 136 (176)
.....+.+.++.|.-... ..+....+..+.|+|+.+.... ....... ...|.++++||+|+.+... ..
T Consensus 100 ~~~~d~IiIEt~G~l~~~---~~~~~~~~~~i~Vvd~~~~d~~--~~~~~~~-----~~~a~iiv~NK~Dl~~~~~~~~~ 169 (207)
T TIGR00073 100 LDDIDLLFIENVGNLVCP---ADFDLGEHMRVVLLSVTEGDDK--PLKYPGM-----FKEADLIVINKADLAEAVGFDVE 169 (207)
T ss_pred cCCCCEEEEecCCCcCCC---cccccccCeEEEEEecCcccch--hhhhHhH-----HhhCCEEEEEHHHccccchhhHH
Confidence 012345666776621000 1111234555667777654321 1111111 1567899999999975322 22
Q ss_pred HHHHHHHHcC--CeEEEeccCCCCChHHHHHHHHHH
Q 030504 137 KQVTFHRKKN--LQYYEISAKSNYNFEKPFLYLARK 170 (176)
Q Consensus 137 ~~~~~~~~~~--~~~~~~S~~~~~~v~~~~~~l~~~ 170 (176)
+.....++.+ ++++++|++++.|++++|+|+.+.
T Consensus 170 ~~~~~l~~~~~~~~i~~~Sa~~g~gv~~l~~~i~~~ 205 (207)
T TIGR00073 170 KMKADAKKINPEAEIILMSLKTGEGLDEWLEFLEGQ 205 (207)
T ss_pred HHHHHHHHhCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 3334444433 889999999999999999999875
|
HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases. |
| >PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity | Back alignment and domain information |
|---|
Probab=99.47 E-value=2.6e-13 Score=93.13 Aligned_cols=109 Identities=13% Similarity=0.135 Sum_probs=55.9
Q ss_pred EEEEEeCCCcccccccccccc--------ccccEEEEEEeCCChhhhhhH-HHHHHHHhhh-cCCCCEEEEEeCCCCCcc
Q 030504 63 RFYCWDTAGQEKFGGLRDGYY--------IHGQCAIIMFDVTARLTYKNV-PTWHRDLCRV-CENIPIVLCGNKVDVKNR 132 (176)
Q Consensus 63 ~~~~~D~~g~~~~~~~~~~~~--------~~~~~~i~v~d~~~~~s~~~~-~~~~~~~~~~-~~~~p~liv~nK~Dl~~~ 132 (176)
.+.++|||||.+....+...- ...-++++++|+....+.... ..++..+.-. .-+.|.+.|+||+|+.+.
T Consensus 92 ~y~l~DtPGQiElf~~~~~~~~i~~~L~~~~~~~~v~LvD~~~~~~~~~f~s~~L~s~s~~~~~~lP~vnvlsK~Dl~~~ 171 (238)
T PF03029_consen 92 DYLLFDTPGQIELFTHSDSGRKIVERLQKNGRLVVVFLVDSSFCSDPSKFVSSLLLSLSIMLRLELPHVNVLSKIDLLSK 171 (238)
T ss_dssp SEEEEE--SSHHHHHHSHHHHHHHHTSSS----EEEEEE-GGG-SSHHHHHHHHHHHHHHHHHHTSEEEEEE--GGGS-H
T ss_pred cEEEEeCCCCEEEEEechhHHHHHHHHhhhcceEEEEEEecccccChhhHHHHHHHHHHHHhhCCCCEEEeeeccCcccc
Confidence 688999999977544333322 345688888987744321111 1112221111 138999999999999763
Q ss_pred ccCH------------------------HHHHHHHHcC-C-eEEEeccCCCCChHHHHHHHHHHH
Q 030504 133 QVKA------------------------KQVTFHRKKN-L-QYYEISAKSNYNFEKPFLYLARKL 171 (176)
Q Consensus 133 ~~~~------------------------~~~~~~~~~~-~-~~~~~S~~~~~~v~~~~~~l~~~i 171 (176)
.... +...+....+ . .++.+|+.+++|+++++..+-+.+
T Consensus 172 ~~~~~l~~~~d~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~f~pls~~~~~~~~~L~~~id~a~ 236 (238)
T PF03029_consen 172 YLEFILEWFEDPDSLEDLLESDYKKLNEEIAELLDDFGLVIRFIPLSSKDGEGMEELLAAIDKAN 236 (238)
T ss_dssp HHHHHHHHHHSHHHHHHHHHT-HHHHHHHHHHHCCCCSSS---EE-BTTTTTTHHHHHHHHHHHH
T ss_pred hhHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEECCChHHHHHHHHHHHHHh
Confidence 2100 0001111122 3 799999999999999999887654
|
; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A. |
| >PRK09435 membrane ATPase/protein kinase; Provisional | Back alignment and domain information |
|---|
Probab=99.47 E-value=1.3e-12 Score=93.31 Aligned_cols=101 Identities=10% Similarity=-0.016 Sum_probs=66.0
Q ss_pred EEEEEEEeCCCccccccccccccccccEEEEEEeCCChhhhhhHHHHHHHHhhhcCCCCEEEEEeCCCCCccccCH----
Q 030504 61 KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKA---- 136 (176)
Q Consensus 61 ~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~~~~~~~---- 136 (176)
++.+.+.||+|....... ....+|.++++.++..+...+.... .+.+ ..-++|+||+|+.......
T Consensus 148 g~d~viieT~Gv~qs~~~---i~~~aD~vlvv~~p~~gd~iq~~k~---gi~E----~aDIiVVNKaDl~~~~~a~~~~~ 217 (332)
T PRK09435 148 GYDVILVETVGVGQSETA---VAGMVDFFLLLQLPGAGDELQGIKK---GIME----LADLIVINKADGDNKTAARRAAA 217 (332)
T ss_pred CCCEEEEECCCCccchhH---HHHhCCEEEEEecCCchHHHHHHHh---hhhh----hhheEEeehhcccchhHHHHHHH
Confidence 467899999997633322 4567999999987665655444332 1111 2238999999987643211
Q ss_pred HHHHHHHH-------cCCeEEEeccCCCCChHHHHHHHHHHH
Q 030504 137 KQVTFHRK-------KNLQYYEISAKSNYNFEKPFLYLARKL 171 (176)
Q Consensus 137 ~~~~~~~~-------~~~~~~~~S~~~~~~v~~~~~~l~~~i 171 (176)
+....... ...+++.+||+++.|++++++++.+.+
T Consensus 218 el~~~L~l~~~~~~~w~~pVi~vSA~~g~GIdeL~~~I~~~~ 259 (332)
T PRK09435 218 EYRSALRLLRPKDPGWQPPVLTCSALEGEGIDEIWQAIEDHR 259 (332)
T ss_pred HHHHHHhcccccccCCCCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 12222221 114799999999999999999998864
|
|
| >PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence | Back alignment and domain information |
|---|
Probab=99.46 E-value=3.3e-13 Score=97.12 Aligned_cols=155 Identities=18% Similarity=0.220 Sum_probs=77.5
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeE---EEeEEEEEecCcEEEEEEEeCCCccccccccccc-----c
Q 030504 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGV---EVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGY-----Y 83 (176)
Q Consensus 12 ~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~-----~ 83 (176)
.+++|+|+|.+|+|||||+|.+.+-...+......|. +.....+. +.+.-++.+||+||..........| +
T Consensus 34 ~~l~IaV~G~sGsGKSSfINalrGl~~~d~~aA~tGv~etT~~~~~Y~-~p~~pnv~lWDlPG~gt~~f~~~~Yl~~~~~ 112 (376)
T PF05049_consen 34 APLNIAVTGESGSGKSSFINALRGLGHEDEGAAPTGVVETTMEPTPYP-HPKFPNVTLWDLPGIGTPNFPPEEYLKEVKF 112 (376)
T ss_dssp --EEEEEEESTTSSHHHHHHHHTT--TTSTTS--SSSHSCCTS-EEEE--SS-TTEEEEEE--GGGSS--HHHHHHHTTG
T ss_pred CceEEEEECCCCCCHHHHHHHHhCCCCCCcCcCCCCCCcCCCCCeeCC-CCCCCCCeEEeCCCCCCCCCCHHHHHHHccc
Confidence 5789999999999999999997642222222222222 22222222 2233468999999965433333333 4
Q ss_pred ccccEEEEEEeCCChhhhhhHHHHHHHHhhhcCCCCEEEEEeCCCCC--cc------ccC-----HHHHHH----HHHcC
Q 030504 84 IHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVK--NR------QVK-----AKQVTF----HRKKN 146 (176)
Q Consensus 84 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~--~~------~~~-----~~~~~~----~~~~~ 146 (176)
..-|.+|++.+-.-.. .-..+...+.+. ++|+++|-||.|.. .. ... ++.++. .++.+
T Consensus 113 ~~yD~fiii~s~rf~~---ndv~La~~i~~~--gK~fyfVRTKvD~Dl~~~~~~~p~~f~~e~~L~~IR~~c~~~L~k~g 187 (376)
T PF05049_consen 113 YRYDFFIIISSERFTE---NDVQLAKEIQRM--GKKFYFVRTKVDSDLYNERRRKPRTFNEEKLLQEIRENCLENLQKAG 187 (376)
T ss_dssp GG-SEEEEEESSS--H---HHHHHHHHHHHT--T-EEEEEE--HHHHHHHHHCC-STT--HHTHHHHHHHHHHHHHHCTT
T ss_pred cccCEEEEEeCCCCch---hhHHHHHHHHHc--CCcEEEEEecccccHhhhhccCCcccCHHHHHHHHHHHHHHHHHHcC
Confidence 4568888766643221 112334455555 89999999999951 11 111 122222 22223
Q ss_pred ---CeEEEeccCCCC--ChHHHHHHHHHHHh
Q 030504 147 ---LQYYEISAKSNY--NFEKPFLYLARKLA 172 (176)
Q Consensus 147 ---~~~~~~S~~~~~--~v~~~~~~l~~~i~ 172 (176)
.++|-+|+.+-. ++..+.+.|.+.+.
T Consensus 188 v~~P~VFLVS~~dl~~yDFp~L~~tL~~dLp 218 (376)
T PF05049_consen 188 VSEPQVFLVSSFDLSKYDFPKLEETLEKDLP 218 (376)
T ss_dssp -SS--EEEB-TTTTTSTTHHHHHHHHHHHS-
T ss_pred CCcCceEEEeCCCcccCChHHHHHHHHHHhH
Confidence 368889987544 57778887776654
|
IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A. |
| >cd01882 BMS1 Bms1 | Back alignment and domain information |
|---|
Probab=99.45 E-value=2.7e-12 Score=87.74 Aligned_cols=140 Identities=13% Similarity=0.173 Sum_probs=82.4
Q ss_pred CCCeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccccccccccEE
Q 030504 10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCA 89 (176)
Q Consensus 10 ~~~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~ 89 (176)
..+...|+++|.+|+|||||++.+.............|. ... ....+..+.++||||.- .. .....+.+|++
T Consensus 36 ~~~~~~i~ivG~~~~GKstl~~~l~~~~~~~~~~~~~g~----i~i-~~~~~~~i~~vDtPg~~--~~-~l~~ak~aDvV 107 (225)
T cd01882 36 EPPPLVVAVVGPPGVGKTTLIKSLVKNYTKQNISDIKGP----ITV-VTGKKRRLTFIECPNDI--NA-MIDIAKVADLV 107 (225)
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHhhcccCcccccccc----EEE-EecCCceEEEEeCCchH--HH-HHHHHHhcCEE
Confidence 456688999999999999999987654222211112221 111 11245567899999853 11 22335789999
Q ss_pred EEEEeCCChhhhhhHHHHHHHHhhhcCCCCE-EEEEeCCCCCcccc-CH----HHHH-HHHH--cCCeEEEeccCCCCCh
Q 030504 90 IIMFDVTARLTYKNVPTWHRDLCRVCENIPI-VLCGNKVDVKNRQV-KA----KQVT-FHRK--KNLQYYEISAKSNYNF 160 (176)
Q Consensus 90 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~-liv~nK~Dl~~~~~-~~----~~~~-~~~~--~~~~~~~~S~~~~~~v 160 (176)
++|+|++....... ...+..+... +.|. ++|+||.|+..... .. +... +..+ .+.+++.+||++.-.+
T Consensus 108 llviDa~~~~~~~~-~~i~~~l~~~--g~p~vi~VvnK~D~~~~~~~~~~~~~~l~~~~~~~~~~~~ki~~iSa~~~~~~ 184 (225)
T cd01882 108 LLLIDASFGFEMET-FEFLNILQVH--GFPRVMGVLTHLDLFKKNKTLRKTKKRLKHRFWTEVYQGAKLFYLSGIVHGRY 184 (225)
T ss_pred EEEEecCcCCCHHH-HHHHHHHHHc--CCCeEEEEEeccccCCcHHHHHHHHHHHHHHHHHhhCCCCcEEEEeeccCCCC
Confidence 99999986543222 1223333332 6774 55999999864221 11 1111 2211 2468999999877543
|
Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes. |
| >PTZ00258 GTP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.45 E-value=4.3e-12 Score=92.31 Aligned_cols=86 Identities=14% Similarity=-0.023 Sum_probs=52.9
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCc---------------EEEEEEEeCCCcccc
Q 030504 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG---------------KIRFYCWDTAGQEKF 75 (176)
Q Consensus 11 ~~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~D~~g~~~~ 75 (176)
...++|.|+|.|++|||||.|++..........|....+.....+...+. ...+.++|+||....
T Consensus 19 ~~~~kvgIVG~PNvGKSTLfnaLt~~~~~v~n~pftTi~p~~g~v~~~d~r~~~l~~~~~~~~~~~aqi~lvDtpGLv~g 98 (390)
T PTZ00258 19 GNNLKMGIVGLPNVGKSTTFNALCKQQVPAENFPFCTIDPNTARVNVPDERFDWLCKHFKPKSIVPAQLDITDIAGLVKG 98 (390)
T ss_pred CCCcEEEEECCCCCChHHHHHHHhcCcccccCCCCCcccceEEEEecccchhhHHHHHcCCcccCCCCeEEEECCCcCcC
Confidence 45689999999999999999997554432111122111222222222221 235899999996532
Q ss_pred cc-------ccccccccccEEEEEEeCC
Q 030504 76 GG-------LRDGYYIHGQCAIIMFDVT 96 (176)
Q Consensus 76 ~~-------~~~~~~~~~~~~i~v~d~~ 96 (176)
.+ .....++++|++++|+|..
T Consensus 99 a~~g~gLg~~fL~~Ir~aD~il~VVd~f 126 (390)
T PTZ00258 99 ASEGEGLGNAFLSHIRAVDGIYHVVRAF 126 (390)
T ss_pred CcchhHHHHHHHHHHHHCCEEEEEEeCC
Confidence 21 2223467899999999973
|
|
| >PRK07560 elongation factor EF-2; Reviewed | Back alignment and domain information |
|---|
Probab=99.43 E-value=6.3e-13 Score=104.70 Aligned_cols=117 Identities=21% Similarity=0.205 Sum_probs=78.5
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHhcCC--CCCc---------ccc---ceeEEEeEE----EEEecCcEEEEEEEeCCCcc
Q 030504 12 PSFKLVIVGDGGTGKTTFVKRHLTGE--FEKK---------YEP---TIGVEVHPL----DFFTNCGKIRFYCWDTAGQE 73 (176)
Q Consensus 12 ~~~~i~i~G~~~~GKttl~~~~~~~~--~~~~---------~~~---~~~~~~~~~----~~~~~~~~~~~~~~D~~g~~ 73 (176)
...+|+++|+.++|||||+.+++... .... +.+ ..|++.... ....+.....+.++||||+.
T Consensus 19 ~iRni~iigh~d~GKTTL~e~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~~ 98 (731)
T PRK07560 19 QIRNIGIIAHIDHGKTTLSDNLLAGAGMISEELAGEQLALDFDEEEQARGITIKAANVSMVHEYEGKEYLINLIDTPGHV 98 (731)
T ss_pred cccEEEEEEeCCCCHHHHHHHHHHHcCCcchhhcCcceecCccHHHHHhhhhhhccceEEEEEecCCcEEEEEEcCCCcc
Confidence 45689999999999999999987421 1100 000 112222222 11224456788999999999
Q ss_pred ccccccccccccccEEEEEEeCCChhhhhhHHHHHHHHhhhcCCCCEEEEEeCCCCCc
Q 030504 74 KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKN 131 (176)
Q Consensus 74 ~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~~ 131 (176)
++.......+..+|++++|+|+......+....|. ..... +.|.++++||.|+..
T Consensus 99 df~~~~~~~l~~~D~avlVvda~~g~~~~t~~~~~-~~~~~--~~~~iv~iNK~D~~~ 153 (731)
T PRK07560 99 DFGGDVTRAMRAVDGAIVVVDAVEGVMPQTETVLR-QALRE--RVKPVLFINKVDRLI 153 (731)
T ss_pred ChHHHHHHHHHhcCEEEEEEECCCCCCccHHHHHH-HHHHc--CCCeEEEEECchhhc
Confidence 98877778889999999999998765443333333 22232 668899999999763
|
|
| >PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments [] | Back alignment and domain information |
|---|
Probab=99.42 E-value=6.7e-12 Score=88.18 Aligned_cols=138 Identities=17% Similarity=0.246 Sum_probs=74.9
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCCCCCcc----------ccceeEEEeEEEEEecCcEEEEEEEeCCCcccccc-----
Q 030504 13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKY----------EPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGG----- 77 (176)
Q Consensus 13 ~~~i~i~G~~~~GKttl~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~----- 77 (176)
.++|+|+|.+|+|||||+|.++........ ..+..+.........++..+.+.++||||.-....
T Consensus 4 ~fnImVvG~sG~GKTTFIntL~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~l~LtiiDTpGfGd~i~n~~~~ 83 (281)
T PF00735_consen 4 NFNIMVVGESGLGKTTFINTLFNSDIISEDSSIPPPSASISRTLEIEERTVELEENGVKLNLTIIDTPGFGDNIDNSDCW 83 (281)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHTSS---------S------SCEEEEEEEEEEEETCEEEEEEEEEEC-CSSSSTHCHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHHhcccccccccccccccccccccceeeEEEEeccCCcceEEEEEeCCCccccccchhhh
Confidence 589999999999999999998765433221 12233333344444566788999999999321100
Q ss_pred --------------------ccccc--cccccEEEEEEeCCChhhhhhHHHHHHHHhhhcCCCCEEEEEeCCCCCcccc-
Q 030504 78 --------------------LRDGY--YIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQV- 134 (176)
Q Consensus 78 --------------------~~~~~--~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~~~~~- 134 (176)
..+.. =.+.|+++|.++++... +..+. +..+.+.....++|.|+.|+|......
T Consensus 84 ~~I~~yI~~qf~~~l~eE~~~~R~~~~D~RVH~cLYfI~pt~~~-L~~~D--i~~mk~Ls~~vNvIPvIaKaD~lt~~el 160 (281)
T PF00735_consen 84 EPIVDYIESQFDSYLEEESKINRPRIEDTRVHACLYFIPPTGHG-LKPLD--IEFMKRLSKRVNVIPVIAKADTLTPEEL 160 (281)
T ss_dssp HHHHHHHHHHHHHHHHHHTSSS-TTS----EEEEEEEE-TTSSS-S-HHH--HHHHHHHTTTSEEEEEESTGGGS-HHHH
T ss_pred HHHHHHHHHHHHHHHHHhhcccccCcCCCCcceEEEEEcCCCcc-chHHH--HHHHHHhcccccEEeEEecccccCHHHH
Confidence 00001 12468999999987532 22222 123333334788999999999765322
Q ss_pred ---CHHHHHHHHHcCCeEEEec
Q 030504 135 ---KAKQVTFHRKKNLQYYEIS 153 (176)
Q Consensus 135 ---~~~~~~~~~~~~~~~~~~S 153 (176)
........+..++.+|...
T Consensus 161 ~~~k~~i~~~l~~~~I~~f~f~ 182 (281)
T PF00735_consen 161 QAFKQRIREDLEENNIKIFDFP 182 (281)
T ss_dssp HHHHHHHHHHHHHTT--S----
T ss_pred HHHHHHHHHHHHHcCceeeccc
Confidence 2234455566777665543
|
Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C. |
| >KOG0082 consensus G-protein alpha subunit (small G protein superfamily) [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.42 E-value=4e-12 Score=90.47 Aligned_cols=114 Identities=15% Similarity=0.168 Sum_probs=79.7
Q ss_pred cEEEEEEEeCCCccccccccccccccccEEEEEEeCCChh-------hhhhHHH---HHHHHhhh--cCCCCEEEEEeCC
Q 030504 60 GKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARL-------TYKNVPT---WHRDLCRV--CENIPIVLCGNKV 127 (176)
Q Consensus 60 ~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~-------s~~~~~~---~~~~~~~~--~~~~p~liv~nK~ 127 (176)
+...+.++|++||..-+.-|-+++.+++++|+|+++++-. ..+.+.. +++.+... +.+.++++++||.
T Consensus 193 k~~~f~~~DvGGQRseRrKWihcFe~v~aviF~vslSeYdq~l~ED~~~NRM~eS~~LF~sI~n~~~F~~tsiiLFLNK~ 272 (354)
T KOG0082|consen 193 KGLKFRMFDVGGQRSERKKWIHCFEDVTAVIFCVSLSEYDQVLEEDETTNRMHESLKLFESICNNKWFANTSIILFLNKK 272 (354)
T ss_pred CCCceEEEeCCCcHHHhhhHHHhhcCCCEEEEEEehhhhhhhcccccchhHHHHHHHHHHHHhcCcccccCcEEEEeecH
Confidence 5578999999999888899999999999999999999532 1222222 33333222 3689999999999
Q ss_pred CCCccc-----------------cCHHHHHHH--------HH--cCCeEEEeccCCCCChHHHHHHHHHHHhc
Q 030504 128 DVKNRQ-----------------VKAKQVTFH--------RK--KNLQYYEISAKSNYNFEKPFLYLARKLAG 173 (176)
Q Consensus 128 Dl~~~~-----------------~~~~~~~~~--------~~--~~~~~~~~S~~~~~~v~~~~~~l~~~i~~ 173 (176)
||-.+. ...++..+. +. ..+-.+.+.|.+-++|+.+|..+...|.+
T Consensus 273 DLFeEKi~~~~~~~~Fpdy~G~~~~~~a~~yI~~kF~~l~~~~~k~iy~h~T~AtDT~nv~~vf~av~d~Ii~ 345 (354)
T KOG0082|consen 273 DLFEEKIKKVPLTDCFPDYKGVNTYEEAAKYIRKKFEELNKNKDKKIYVHFTCATDTQNVQFVFDAVTDTIIQ 345 (354)
T ss_pred HHHHHHhccCchhhhCcCCCCCCChHHHHHHHHHHHHHHhcccCCcceEEEEeeccHHHHHHHHHHHHHHHHH
Confidence 975421 111221111 11 23557778999999999999998887654
|
|
| >COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.42 E-value=3.1e-12 Score=87.98 Aligned_cols=161 Identities=16% Similarity=0.127 Sum_probs=111.0
Q ss_pred CCCCeeEEEEEcCCCCcHHHHHHHHhc---CC-------CC----CccccceeEEEeEEEEEecCcEEEEEEEeCCCccc
Q 030504 9 VDYPSFKLVIVGDGGTGKTTFVKRHLT---GE-------FE----KKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK 74 (176)
Q Consensus 9 ~~~~~~~i~i~G~~~~GKttl~~~~~~---~~-------~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~ 74 (176)
...+++||..+|+.+.|||||..++.. .. +. .......|++.....+.++.....+...|.|||..
T Consensus 8 r~kphVNigtiGHvdHGKTTLtaAit~~la~~~~~~~~~y~~id~aPeEk~rGITIntahveyet~~rhyahVDcPGHaD 87 (394)
T COG0050 8 RTKPHVNVGTIGHVDHGKTTLTAAITTVLAKKGGAEAKAYDQIDNAPEEKARGITINTAHVEYETANRHYAHVDCPGHAD 87 (394)
T ss_pred CCCCeeEEEEeccccCchhhHHHHHHHHHHhhccccccchhhhccCchHhhcCceeccceeEEecCCceEEeccCCChHH
Confidence 457899999999999999999988543 10 10 01122457777777777776777788999999999
Q ss_pred cccccccccccccEEEEEEeCCChhhhhhHHHHHHHHhhhcCCCC-EEEEEeCCCCCccc-----cCHHHHHHHHHcCC-
Q 030504 75 FGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIP-IVLCGNKVDVKNRQ-----VKAKQVTFHRKKNL- 147 (176)
Q Consensus 75 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p-~liv~nK~Dl~~~~-----~~~~~~~~~~~~~~- 147 (176)
|-...-.-..+.|+.|+|+++++...-+...+.+ ...+. +.| +++++||+|+.++. +..+.+++...+++
T Consensus 88 YvKNMItgAaqmDgAILVVsA~dGpmPqTrEHiL-larqv--Gvp~ivvflnK~Dmvdd~ellelVemEvreLLs~y~f~ 164 (394)
T COG0050 88 YVKNMITGAAQMDGAILVVAATDGPMPQTREHIL-LARQV--GVPYIVVFLNKVDMVDDEELLELVEMEVRELLSEYGFP 164 (394)
T ss_pred HHHHHhhhHHhcCccEEEEEcCCCCCCcchhhhh-hhhhc--CCcEEEEEEecccccCcHHHHHHHHHHHHHHHHHcCCC
Confidence 8877777777899999999999987666655432 11222 665 67788999998632 33456677777764
Q ss_pred ----eEEEeccCCC-C-------ChHHHHHHHHHHHh
Q 030504 148 ----QYYEISAKSN-Y-------NFEKPFLYLARKLA 172 (176)
Q Consensus 148 ----~~~~~S~~~~-~-------~v~~~~~~l~~~i~ 172 (176)
+++.-|++.- + .+.++++.+...+.
T Consensus 165 gd~~Pii~gSal~ale~~~~~~~~i~eLm~avd~yip 201 (394)
T COG0050 165 GDDTPIIRGSALKALEGDAKWEAKIEELMDAVDSYIP 201 (394)
T ss_pred CCCcceeechhhhhhcCCcchHHHHHHHHHHHHhcCC
Confidence 5666666532 2 24666666555543
|
|
| >COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.40 E-value=4.8e-12 Score=98.02 Aligned_cols=129 Identities=19% Similarity=0.158 Sum_probs=97.4
Q ss_pred CCCeeEEEEEcCCCCcHHHHHHHHhc--CCCCC--------------ccccceeEEEeEEEEEecCc-EEEEEEEeCCCc
Q 030504 10 DYPSFKLVIVGDGGTGKTTFVKRHLT--GEFEK--------------KYEPTIGVEVHPLDFFTNCG-KIRFYCWDTAGQ 72 (176)
Q Consensus 10 ~~~~~~i~i~G~~~~GKttl~~~~~~--~~~~~--------------~~~~~~~~~~~~~~~~~~~~-~~~~~~~D~~g~ 72 (176)
.....||.|+|+-.+|||||..+++. |.... ......|++......+..++ .+.++++|||||
T Consensus 7 ~~~~RNigI~aHidaGKTTltE~lL~~tG~i~k~G~v~~g~~~~D~~e~EqeRGITI~saa~s~~~~~~~~iNlIDTPGH 86 (697)
T COG0480 7 LERIRNIGIVAHIDAGKTTLTERILFYTGIISKIGEVHDGAATMDWMEQEQERGITITSAATTLFWKGDYRINLIDTPGH 86 (697)
T ss_pred cccceEEEEEeccCCChHHHHHHHHHHcCCcCCCccccCCCccCCCcHHHHhcCCEEeeeeeEEEEcCceEEEEeCCCCc
Confidence 44667999999999999999999774 22111 11123467777777777767 489999999999
Q ss_pred cccccccccccccccEEEEEEeCCChhhhhhHHHHHHHHhhhcCCCCEEEEEeCCCCCccccCHHHHHH
Q 030504 73 EKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTF 141 (176)
Q Consensus 73 ~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~~~~~~~~~~~~ 141 (176)
-.|.......++-.|++++|+|+...-..+.-..|.+.... +.|.+++.||.|....+...-...+
T Consensus 87 VDFt~EV~rslrvlDgavvVvdaveGV~~QTEtv~rqa~~~---~vp~i~fiNKmDR~~a~~~~~~~~l 152 (697)
T COG0480 87 VDFTIEVERSLRVLDGAVVVVDAVEGVEPQTETVWRQADKY---GVPRILFVNKMDRLGADFYLVVEQL 152 (697)
T ss_pred cccHHHHHHHHHhhcceEEEEECCCCeeecHHHHHHHHhhc---CCCeEEEEECccccccChhhhHHHH
Confidence 99999888999999999999999988766666666544433 8999999999998765544333333
|
|
| >COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.40 E-value=3.2e-12 Score=88.89 Aligned_cols=161 Identities=16% Similarity=0.110 Sum_probs=104.2
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHhcCCCCCcccc----cee--EEEe--------------EEEE--Eec------CcEE
Q 030504 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEP----TIG--VEVH--------------PLDF--FTN------CGKI 62 (176)
Q Consensus 11 ~~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~----~~~--~~~~--------------~~~~--~~~------~~~~ 62 (176)
.+++||.++|+...|||||+.++.+ .+...++. .+. ..+. .+.. ... .-..
T Consensus 8 Qp~vNIG~vGHVdHGKtTlv~AlsG-vwT~~hseElkRgitIkLGYAd~~i~kC~~c~~~~~y~~~~~C~~cg~~~~l~R 86 (415)
T COG5257 8 QPEVNIGMVGHVDHGKTTLTKALSG-VWTDRHSEELKRGITIKLGYADAKIYKCPECYRPECYTTEPKCPNCGAETELVR 86 (415)
T ss_pred CcceEeeeeeecccchhhheehhhc-eeeechhHHHhcCcEEEeccccCceEeCCCCCCCcccccCCCCCCCCCCccEEE
Confidence 5789999999999999999998543 22111111 000 0000 0000 001 1124
Q ss_pred EEEEEeCCCccccccccccccccccEEEEEEeCCChh-hhhhHHHHHHHHhhhcCCCCEEEEEeCCCCCccccCH----H
Q 030504 63 RFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARL-TYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKA----K 137 (176)
Q Consensus 63 ~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~~~~~~~----~ 137 (176)
.+.+.|.||||...+....-..-.|++++|+.++.+. .-+..+++ .. .+...-+.++++=||.|+..+.... +
T Consensus 87 ~VSfVDaPGHe~LMATMLsGAAlMDgAlLvIaANEpcPQPQT~EHl-~A-leIigik~iiIvQNKIDlV~~E~AlE~y~q 164 (415)
T COG5257 87 RVSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTREHL-MA-LEIIGIKNIIIVQNKIDLVSRERALENYEQ 164 (415)
T ss_pred EEEEeeCCchHHHHHHHhcchhhhcceEEEEecCCCCCCCchHHHH-HH-HhhhccceEEEEecccceecHHHHHHHHHH
Confidence 6889999999987766666556679999999999764 22333332 11 2222356788899999998754322 2
Q ss_pred HHHHHHH---cCCeEEEeccCCCCChHHHHHHHHHHHhcC
Q 030504 138 QVTFHRK---KNLQYYEISAKSNYNFEKPFLYLARKLAGS 174 (176)
Q Consensus 138 ~~~~~~~---~~~~~~~~S~~~~~~v~~~~~~l~~~i~~~ 174 (176)
..+|.+. .+.+++.+||..+.|++-+++.|.+.|...
T Consensus 165 Ik~FvkGt~Ae~aPIIPiSA~~~~NIDal~e~i~~~IptP 204 (415)
T COG5257 165 IKEFVKGTVAENAPIIPISAQHKANIDALIEAIEKYIPTP 204 (415)
T ss_pred HHHHhcccccCCCceeeehhhhccCHHHHHHHHHHhCCCC
Confidence 3344433 367999999999999999999999988653
|
|
| >TIGR02836 spore_IV_A stage IV sporulation protein A | Back alignment and domain information |
|---|
Probab=99.39 E-value=1.3e-11 Score=89.26 Aligned_cols=155 Identities=16% Similarity=0.174 Sum_probs=92.9
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHhcCCCCC--------------cccccee---EEEeEEE-------E-EecCcEEEEEE
Q 030504 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEK--------------KYEPTIG---VEVHPLD-------F-FTNCGKIRFYC 66 (176)
Q Consensus 12 ~~~~i~i~G~~~~GKttl~~~~~~~~~~~--------------~~~~~~~---~~~~~~~-------~-~~~~~~~~~~~ 66 (176)
..+.|.++|+.++|||||+++|...-..+ -.++..| +|...+. + ..++-..++.+
T Consensus 16 G~IyIGvvGpvrtGKSTfIn~fm~q~VlP~i~~~~~k~Ra~DELpqs~~GktItTTePkfvP~kAvEI~~~~~~~~~Vrl 95 (492)
T TIGR02836 16 GDIYIGVVGPVRTGKSTFIKKFMELLVLPNISNEYDKERAQDELPQSAAGKTIMTTEPKFVPNEAVEININEGTKFKVRL 95 (492)
T ss_pred CcEEEEEEcCCCCChHHHHHHHHhhhccccccchhHHhHHHhccCcCCCCCCcccCCCccccCcceEEeccCCCcccEEE
Confidence 46789999999999999999987651111 1122333 2222221 1 12344578899
Q ss_pred EeCCCccc--------ccc------c---------------cccccc-cccEEEEEE-eCC----ChhhhhhH-HHHHHH
Q 030504 67 WDTAGQEK--------FGG------L---------------RDGYYI-HGQCAIIMF-DVT----ARLTYKNV-PTWHRD 110 (176)
Q Consensus 67 ~D~~g~~~--------~~~------~---------------~~~~~~-~~~~~i~v~-d~~----~~~s~~~~-~~~~~~ 110 (176)
+||+|... ... - .+..+. .++..++|. |.+ .+..+... ..++..
T Consensus 96 IDcvG~~v~GalG~~r~~k~RmV~TPW~d~~IPF~~AAeiGT~kVI~dhstIgivVtTDgsi~dI~Re~y~~aEe~~i~e 175 (492)
T TIGR02836 96 VDCVGYTVKGALGYMEEDKPRMVSTPWYDYEIPFEEAAEIGTRKVIQEHSTIGVVVTTDGTITDIPREDYVEAEERVIEE 175 (492)
T ss_pred EECCCcccCCCccceeccccccccCCcccccCchhhhhhhhHHHHHHhcCcEEEEEEcCCCccccccccchHHHHHHHHH
Confidence 99998321 111 0 112233 688888888 654 12233333 356666
Q ss_pred HhhhcCCCCEEEEEeCCCCCccccCHHHHHHHHHcCCeEEEeccCC--CCChHHHHHHHH
Q 030504 111 LCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKS--NYNFEKPFLYLA 168 (176)
Q Consensus 111 ~~~~~~~~p~liv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~S~~~--~~~v~~~~~~l~ 168 (176)
+.+. ++|+++++||+|...........++..+++.+++.+|+.. .+.+..+++.++
T Consensus 176 Lk~~--~kPfiivlN~~dp~~~et~~l~~~l~eky~vpvl~v~c~~l~~~DI~~il~~vL 233 (492)
T TIGR02836 176 LKEL--NKPFIILLNSTHPYHPETEALRQELEEKYDVPVLAMDVESMRESDILSVLEEVL 233 (492)
T ss_pred HHhc--CCCEEEEEECcCCCCchhHHHHHHHHHHhCCceEEEEHHHcCHHHHHHHHHHHH
Confidence 6666 9999999999995543333333456667788888877764 335555555443
|
A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis. |
| >KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.38 E-value=9.8e-12 Score=94.78 Aligned_cols=158 Identities=21% Similarity=0.214 Sum_probs=101.7
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHhcCCCCCccc----cceeEEEeEEEE--------EecC----cEEEEEEEeCCCcccc
Q 030504 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYE----PTIGVEVHPLDF--------FTNC----GKIRFYCWDTAGQEKF 75 (176)
Q Consensus 12 ~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~----~~~~~~~~~~~~--------~~~~----~~~~~~~~D~~g~~~~ 75 (176)
+.-=|||+|+..+|||-|+..+..-+.+.... ..+|.++..... .-+. +---+.++|||||+.|
T Consensus 474 RSPIcCilGHVDTGKTKlld~ir~tNVqegeaggitqqIgAt~fp~~ni~e~tk~~~~~~K~~~kvPg~lvIdtpghEsF 553 (1064)
T KOG1144|consen 474 RSPICCILGHVDTGKTKLLDKIRGTNVQEGEAGGITQQIGATYFPAENIREKTKELKKDAKKRLKVPGLLVIDTPGHESF 553 (1064)
T ss_pred CCceEEEeecccccchHHHHHhhccccccccccceeeeccccccchHHHHHHHHHHHhhhhhhcCCCeeEEecCCCchhh
Confidence 34448999999999999999866544432211 122333332221 0000 1123678999999999
Q ss_pred ccccccccccccEEEEEEeCCChhhhhhHHHHHHHHhhhcCCCCEEEEEeCCCCC-c-cc----c------------CHH
Q 030504 76 GGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVK-N-RQ----V------------KAK 137 (176)
Q Consensus 76 ~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~-~-~~----~------------~~~ 137 (176)
..+......-||.+|+|+|+-.+-.-+.+ ..+..+..+ +.|+++.+||.|.. + .. . ..+
T Consensus 554 tnlRsrgsslC~~aIlvvdImhGlepqti-ESi~lLR~r--ktpFivALNKiDRLYgwk~~p~~~i~~~lkkQ~k~v~~E 630 (1064)
T KOG1144|consen 554 TNLRSRGSSLCDLAILVVDIMHGLEPQTI-ESINLLRMR--KTPFIVALNKIDRLYGWKSCPNAPIVEALKKQKKDVQNE 630 (1064)
T ss_pred hhhhhccccccceEEEEeehhccCCcchh-HHHHHHHhc--CCCeEEeehhhhhhcccccCCCchHHHHHHHhhHHHHHH
Confidence 99999999999999999999865322222 223444444 99999999999953 1 10 0 000
Q ss_pred --------HHHHHHH-c-------------CCeEEEeccCCCCChHHHHHHHHHHHh
Q 030504 138 --------QVTFHRK-K-------------NLQYYEISAKSNYNFEKPFLYLARKLA 172 (176)
Q Consensus 138 --------~~~~~~~-~-------------~~~~~~~S~~~~~~v~~~~~~l~~~i~ 172 (176)
..+|+.+ + .++++++||.+|+|+.+++.+|++...
T Consensus 631 F~~R~~~ii~efaEQgLN~~LyykNk~~~~~vsiVPTSA~sGeGipdLl~llv~ltQ 687 (1064)
T KOG1144|consen 631 FKERLNNIIVEFAEQGLNAELYYKNKEMGETVSIVPTSAISGEGIPDLLLLLVQLTQ 687 (1064)
T ss_pred HHHHHHHHHHHHHHcccchhheeecccccceEEeeecccccCCCcHHHHHHHHHHHH
Confidence 0111111 0 145788999999999999999988643
|
|
| >KOG3886 consensus GTP-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.36 E-value=1.8e-12 Score=86.15 Aligned_cols=157 Identities=18% Similarity=0.249 Sum_probs=97.3
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHhcCCCC-CccccceeEEEeEEEEEecCcEEEEEEEeCCCcccc-----cccccccccc
Q 030504 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFE-KKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKF-----GGLRDGYYIH 85 (176)
Q Consensus 12 ~~~~i~i~G~~~~GKttl~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~-----~~~~~~~~~~ 85 (176)
..-||+++|.+|+|||++-..+..+.-. ....++..+++.....++- ....+.+||.+|++.+ .......+++
T Consensus 3 ~~kKvlLMGrsGsGKsSmrsiiF~ny~a~D~~rlg~tidveHsh~Rfl-Gnl~LnlwDcGgqe~fmen~~~~q~d~iF~n 81 (295)
T KOG3886|consen 3 MKKKVLLMGRSGSGKSSMRSIIFANYIARDTRRLGATIDVEHSHVRFL-GNLVLNLWDCGGQEEFMENYLSSQEDNIFRN 81 (295)
T ss_pred ccceEEEeccCCCCccccchhhhhhhhhhhhhccCCcceeeehhhhhh-hhheeehhccCCcHHHHHHHHhhcchhhhee
Confidence 3468999999999999988776654421 1112222122222222111 2356889999999843 2355567889
Q ss_pred ccEEEEEEeCCChhhhhhHH---HHHHHHhhhcCCCCEEEEEeCCCCCccccCHH--------HHHHHHHcCCeEEEecc
Q 030504 86 GQCAIIMFDVTARLTYKNVP---TWHRDLCRVCENIPIVLCGNKVDVKNRQVKAK--------QVTFHRKKNLQYYEISA 154 (176)
Q Consensus 86 ~~~~i~v~d~~~~~s~~~~~---~~~~~~~~~~~~~p~liv~nK~Dl~~~~~~~~--------~~~~~~~~~~~~~~~S~ 154 (176)
.+++++|||+...+-...+. +.++.+.+..|...+.+..+|.|+........ ...+.+...+.++.+|.
T Consensus 82 V~vli~vFDves~e~~~D~~~yqk~Le~ll~~SP~AkiF~l~hKmDLv~~d~r~~if~~r~~~l~~~s~~~~~~~f~Tsi 161 (295)
T KOG3886|consen 82 VQVLIYVFDVESREMEKDFHYYQKCLEALLQNSPEAKIFCLLHKMDLVQEDARELIFQRRKEDLRRLSRPLECKCFPTSI 161 (295)
T ss_pred heeeeeeeeccchhhhhhHHHHHHHHHHHHhcCCcceEEEEEeechhcccchHHHHHHHHHHHHHHhcccccccccccch
Confidence 99999999999876544444 34455566667888999999999976443222 22333345577888876
Q ss_pred CCCCChHHHHHHHHHH
Q 030504 155 KSNYNFEKPFLYLARK 170 (176)
Q Consensus 155 ~~~~~v~~~~~~l~~~ 170 (176)
.+. .+-.++..++..
T Consensus 162 wDe-tl~KAWS~iv~~ 176 (295)
T KOG3886|consen 162 WDE-TLYKAWSSIVYN 176 (295)
T ss_pred hhH-HHHHHHHHHHHh
Confidence 653 333334444433
|
|
| >COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription] | Back alignment and domain information |
|---|
Probab=99.35 E-value=1.5e-11 Score=80.10 Aligned_cols=76 Identities=11% Similarity=0.004 Sum_probs=50.5
Q ss_pred cEEEEEEeCCChhhhhhHHHHHHHHhhhcC--CCCEEEEEeCCCCCccccC--HHHHHHHHH--cCCeEEEeccCCCCCh
Q 030504 87 QCAIIMFDVTARLTYKNVPTWHRDLCRVCE--NIPIVLCGNKVDVKNRQVK--AKQVTFHRK--KNLQYYEISAKSNYNF 160 (176)
Q Consensus 87 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~p~liv~nK~Dl~~~~~~--~~~~~~~~~--~~~~~~~~S~~~~~~v 160 (176)
+.-|+|+|++..+- ...+.-| ...=++|+||.|+.+.... +....-+++ -..+++++|+++|+|+
T Consensus 119 ~~~v~VidvteGe~---------~P~K~gP~i~~aDllVInK~DLa~~v~~dlevm~~da~~~np~~~ii~~n~ktg~G~ 189 (202)
T COG0378 119 HLRVVVIDVTEGED---------IPRKGGPGIFKADLLVINKTDLAPYVGADLEVMARDAKEVNPEAPIIFTNLKTGEGL 189 (202)
T ss_pred ceEEEEEECCCCCC---------CcccCCCceeEeeEEEEehHHhHHHhCccHHHHHHHHHHhCCCCCEEEEeCCCCcCH
Confidence 47788888876641 1111001 1133888999999874332 333344444 4589999999999999
Q ss_pred HHHHHHHHHHH
Q 030504 161 EKPFLYLARKL 171 (176)
Q Consensus 161 ~~~~~~l~~~i 171 (176)
+++++|+....
T Consensus 190 ~~~~~~i~~~~ 200 (202)
T COG0378 190 DEWLRFIEPQA 200 (202)
T ss_pred HHHHHHHHhhc
Confidence 99999998764
|
|
| >COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.35 E-value=1.3e-11 Score=89.29 Aligned_cols=155 Identities=15% Similarity=0.059 Sum_probs=109.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCC-ccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccccccccccEEEEEE
Q 030504 15 KLVIVGDGGTGKTTFVKRHLTGEFEK-KYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMF 93 (176)
Q Consensus 15 ~i~i~G~~~~GKttl~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 93 (176)
-|+..|+-..|||||+..+.++.... .-....|++.+....+.+.......+.|.||++++-...-+.+...|.+++|+
T Consensus 2 ii~t~GhidHgkT~L~~altg~~~d~l~EekKRG~TiDlg~~y~~~~d~~~~fIDvpgh~~~i~~miag~~~~d~alLvV 81 (447)
T COG3276 2 IIGTAGHIDHGKTTLLKALTGGVTDRLPEEKKRGITIDLGFYYRKLEDGVMGFIDVPGHPDFISNLLAGLGGIDYALLVV 81 (447)
T ss_pred eEEEeeeeeccchhhhhhhcccccccchhhhhcCceEeeeeEeccCCCCceEEeeCCCcHHHHHHHHhhhcCCceEEEEE
Confidence 46778889999999999976554321 11223455666665555555558899999999998887777778899999999
Q ss_pred eCCChhhhhhHHHHHHHHhhhcCCCCEEEEEeCCCCCccccCH-HHHHHHHH---cCCeEEEeccCCCCChHHHHHHHHH
Q 030504 94 DVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKA-KQVTFHRK---KNLQYYEISAKSNYNFEKPFLYLAR 169 (176)
Q Consensus 94 d~~~~~s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~~~~~~~-~~~~~~~~---~~~~~~~~S~~~~~~v~~~~~~l~~ 169 (176)
++++.-..+..++. .+.........++|+||+|..+....+ ...+.... ...++|.+|+.+|+|++++.+.|..
T Consensus 82 ~~deGl~~qtgEhL--~iLdllgi~~giivltk~D~~d~~r~e~~i~~Il~~l~l~~~~i~~~s~~~g~GI~~Lk~~l~~ 159 (447)
T COG3276 82 AADEGLMAQTGEHL--LILDLLGIKNGIIVLTKADRVDEARIEQKIKQILADLSLANAKIFKTSAKTGRGIEELKNELID 159 (447)
T ss_pred eCccCcchhhHHHH--HHHHhcCCCceEEEEeccccccHHHHHHHHHHHHhhcccccccccccccccCCCHHHHHHHHHH
Confidence 99876655555443 222333345569999999998643222 22222222 2457899999999999999999988
Q ss_pred HH
Q 030504 170 KL 171 (176)
Q Consensus 170 ~i 171 (176)
..
T Consensus 160 L~ 161 (447)
T COG3276 160 LL 161 (447)
T ss_pred hh
Confidence 76
|
|
| >PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another | Back alignment and domain information |
|---|
Probab=99.34 E-value=2.5e-11 Score=79.48 Aligned_cols=63 Identities=17% Similarity=0.197 Sum_probs=44.6
Q ss_pred EEEEEeCCCccc----cccccccccccccEEEEEEeCCChhhhhhHHHHHHHHhhhcCCCCEEEEEeCC
Q 030504 63 RFYCWDTAGQEK----FGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKV 127 (176)
Q Consensus 63 ~~~~~D~~g~~~----~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~liv~nK~ 127 (176)
.+.++||||... ....+..++..+|++++|.+++...+-.....+.+..... ...+++|.||.
T Consensus 102 ~~~lvDtPG~~~~~~~~~~~~~~~~~~~d~vi~V~~~~~~~~~~~~~~l~~~~~~~--~~~~i~V~nk~ 168 (168)
T PF00350_consen 102 NLTLVDTPGLNSTNSEHTEITEEYLPKADVVIFVVDANQDLTESDMEFLKQMLDPD--KSRTIFVLNKA 168 (168)
T ss_dssp SEEEEEEEEBHSSHTTTSHHHHHHHSTTEEEEEEEETTSTGGGHHHHHHHHHHTTT--CSSEEEEEE-G
T ss_pred ceEEEeCCccccchhhhHHHHHHhhccCCEEEEEeccCcccchHHHHHHHHHhcCC--CCeEEEEEcCC
Confidence 488999999643 2356777789999999999999866555555555454444 45588888984
|
Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D .... |
| >PRK09601 GTP-binding protein YchF; Reviewed | Back alignment and domain information |
|---|
Probab=99.30 E-value=9.2e-11 Score=84.58 Aligned_cols=83 Identities=17% Similarity=-0.014 Sum_probs=51.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCc---------------EEEEEEEeCCCcccccc-
Q 030504 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG---------------KIRFYCWDTAGQEKFGG- 77 (176)
Q Consensus 14 ~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~D~~g~~~~~~- 77 (176)
++|.++|.|+||||||.|++.+.......-|....+.....+.+.+. ...+.+.|+||......
T Consensus 3 ~~vgIVG~PNvGKSTLfnaLt~~~~~v~nypftTi~p~~G~~~v~d~r~~~l~~~~~p~~~~~a~i~lvD~pGL~~~a~~ 82 (364)
T PRK09601 3 LKCGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGVVPVPDPRLDKLAEIVKPKKIVPATIEFVDIAGLVKGASK 82 (364)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCeecccccccccceEEEEEeccccchhhHHhcCCccccCceEEEEECCCCCCCCCh
Confidence 68999999999999999997765532111111111222222222221 13589999999643221
Q ss_pred ------ccccccccccEEEEEEeCC
Q 030504 78 ------LRDGYYIHGQCAIIMFDVT 96 (176)
Q Consensus 78 ------~~~~~~~~~~~~i~v~d~~ 96 (176)
.....++++|++++|+|+.
T Consensus 83 g~glg~~fL~~i~~aD~li~VVd~f 107 (364)
T PRK09601 83 GEGLGNQFLANIREVDAIVHVVRCF 107 (364)
T ss_pred HHHHHHHHHHHHHhCCEEEEEEeCC
Confidence 1222367899999999984
|
|
| >smart00053 DYNc Dynamin, GTPase | Back alignment and domain information |
|---|
Probab=99.30 E-value=6.6e-11 Score=81.09 Aligned_cols=91 Identities=9% Similarity=0.082 Sum_probs=53.8
Q ss_pred EEEEEEeCCCcccc-------------ccccccccc-cccEEEEEEeCCChhhhhhHHHHHHHHhhhcCCCCEEEEEeCC
Q 030504 62 IRFYCWDTAGQEKF-------------GGLRDGYYI-HGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKV 127 (176)
Q Consensus 62 ~~~~~~D~~g~~~~-------------~~~~~~~~~-~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~liv~nK~ 127 (176)
..+.++||||.... ..+...+++ ..+.+++|+|+...-.-+......+.+... +.|+++|+||.
T Consensus 125 ~~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~~~~~IIL~Vvda~~d~~~~d~l~ia~~ld~~--~~rti~ViTK~ 202 (240)
T smart00053 125 LNLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISKEECLILAVTPANVDLANSDALKLAKEVDPQ--GERTIGVITKL 202 (240)
T ss_pred CceEEEeCCCccccccCCccHHHHHHHHHHHHHHHhCccCeEEEEEECCCCCCchhHHHHHHHHHHc--CCcEEEEEECC
Confidence 46899999997421 113344555 346899999987543323333334444333 88999999999
Q ss_pred CCCccccCHHHHHHHHH----cCCeEEEeccCC
Q 030504 128 DVKNRQVKAKQVTFHRK----KNLQYYEISAKS 156 (176)
Q Consensus 128 Dl~~~~~~~~~~~~~~~----~~~~~~~~S~~~ 156 (176)
|..++... ...+++. +...|+.+-...
T Consensus 203 D~~~~~~~--~~~~~~~~~~~l~~g~~~v~nr~ 233 (240)
T smart00053 203 DLMDEGTD--ARDILENKLLPLRRGYIGVVNRS 233 (240)
T ss_pred CCCCccHH--HHHHHhCCccccCCCEEEEECCC
Confidence 98764432 3333333 234455554443
|
Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event. |
| >KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.29 E-value=7.9e-12 Score=92.41 Aligned_cols=158 Identities=22% Similarity=0.385 Sum_probs=119.1
Q ss_pred CCCCeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccccccccccE
Q 030504 9 VDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQC 88 (176)
Q Consensus 9 ~~~~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~ 88 (176)
...+++|+.|+|..++|||+|+++++.|.+.....|.-| ....++..++....+.+.|.+|... ..+-...|+
T Consensus 26 rsipelk~givg~~~sgktalvhr~ltgty~~~e~~e~~--~~kkE~vv~gqs~lLlirdeg~~~~-----aQft~wvda 98 (749)
T KOG0705|consen 26 RSIPELKLGIVGTSQSGKTALVHRYLTGTYTQDESPEGG--RFKKEVVVDGQSHLLLIRDEGGHPD-----AQFCQWVDA 98 (749)
T ss_pred cccchhheeeeecccCCceeeeeeeccceeccccCCcCc--cceeeEEeeccceEeeeecccCCch-----hhhhhhccc
Confidence 456899999999999999999999999999877565544 4555666677788888899888432 344567899
Q ss_pred EEEEEeCCChhhhhhHHHHHHHHhhhc--CCCCEEEEEeCCCCCc--ccc--CHHHH-HHHHHcCCeEEEeccCCCCChH
Q 030504 89 AIIMFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKN--RQV--KAKQV-TFHRKKNLQYYEISAKSNYNFE 161 (176)
Q Consensus 89 ~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~liv~nK~Dl~~--~~~--~~~~~-~~~~~~~~~~~~~S~~~~~~v~ 161 (176)
+|+||...+..+|+.+..+...+.... ...|+++++++.-..- .++ ..+.. ..++-..+.+|++++.+|.++.
T Consensus 99 vIfvf~~~d~~s~q~v~~l~~~l~~~r~r~~i~l~lvgtqd~iS~~~~rv~~da~~r~l~~~~krcsy~et~atyGlnv~ 178 (749)
T KOG0705|consen 99 VVFVFSVEDEQSFQAVQALAHEMSSYRNISDLPLILVGTQDHISAKRPRVITDDRARQLSAQMKRCSYYETCATYGLNVE 178 (749)
T ss_pred eEEEEEeccccCHHHHHHHHhhcccccccccchHHhhcCcchhhcccccccchHHHHHHHHhcCccceeecchhhhhhHH
Confidence 999999999999988877666555332 4778888888765432 222 22223 3344467899999999999999
Q ss_pred HHHHHHHHHHhc
Q 030504 162 KPFLYLARKLAG 173 (176)
Q Consensus 162 ~~~~~l~~~i~~ 173 (176)
..|+.++.++..
T Consensus 179 rvf~~~~~k~i~ 190 (749)
T KOG0705|consen 179 RVFQEVAQKIVQ 190 (749)
T ss_pred HHHHHHHHHHHH
Confidence 999999887653
|
|
| >TIGR00750 lao LAO/AO transport system ATPase | Back alignment and domain information |
|---|
Probab=99.29 E-value=4.8e-11 Score=85.02 Aligned_cols=101 Identities=10% Similarity=0.002 Sum_probs=62.1
Q ss_pred EEEEEEEeCCCccccccccccccccccEEEEEEeCCChhhhhhHHHHHHHHhhhcCCCCEEEEEeCCCCCccccCHHH--
Q 030504 61 KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQ-- 138 (176)
Q Consensus 61 ~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~~~~~~~~~-- 138 (176)
++.+.+.||+|.-... ......+|.++++....... .+......+ ..+|.++++||+|+.........
T Consensus 126 g~D~viidT~G~~~~e---~~i~~~aD~i~vv~~~~~~~---el~~~~~~l----~~~~~ivv~NK~Dl~~~~~~~~~~~ 195 (300)
T TIGR00750 126 GYDVIIVETVGVGQSE---VDIANMADTFVVVTIPGTGD---DLQGIKAGL----MEIADIYVVNKADGEGATNVTIARL 195 (300)
T ss_pred CCCEEEEeCCCCchhh---hHHHHhhceEEEEecCCccH---HHHHHHHHH----hhhccEEEEEcccccchhHHHHHHH
Confidence 4678899999853211 12455678888775443332 222222222 26788999999999754321110
Q ss_pred ------HHHHHH-cC--CeEEEeccCCCCChHHHHHHHHHHH
Q 030504 139 ------VTFHRK-KN--LQYYEISAKSNYNFEKPFLYLARKL 171 (176)
Q Consensus 139 ------~~~~~~-~~--~~~~~~S~~~~~~v~~~~~~l~~~i 171 (176)
..+... .+ .+++.+|++++.|++++++++.+..
T Consensus 196 ~~~~~l~~l~~~~~~~~~~v~~iSA~~g~Gi~~L~~~i~~~~ 237 (300)
T TIGR00750 196 MLALALEEIRRREDGWRPPVLTTSAVEGRGIDELWDAIEEHK 237 (300)
T ss_pred HHHHHHhhccccccCCCCCEEEEEccCCCCHHHHHHHHHHHH
Confidence 011111 12 3589999999999999999998763
|
Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however. |
| >PRK12289 GTPase RsgA; Reviewed | Back alignment and domain information |
|---|
Probab=99.26 E-value=5e-11 Score=86.14 Aligned_cols=95 Identities=16% Similarity=0.126 Sum_probs=70.6
Q ss_pred ccccccccccccccEEEEEEeCCChh-hhhhHHHHHHHHhhhcCCCCEEEEEeCCCCCccccCHHHHHHHHHcCCeEEEe
Q 030504 74 KFGGLRDGYYIHGQCAIIMFDVTARL-TYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEI 152 (176)
Q Consensus 74 ~~~~~~~~~~~~~~~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 152 (176)
+...+.+..+.++|.+++|+|+.++. ....+..|+..... .+.|+++|+||+||..........+.+...++.++.+
T Consensus 78 R~~~L~R~~~aNvD~vLlV~d~~~p~~~~~~LdR~L~~a~~--~~ip~ILVlNK~DLv~~~~~~~~~~~~~~~g~~v~~i 155 (352)
T PRK12289 78 RKTELDRPPVANADQILLVFALAEPPLDPWQLSRFLVKAES--TGLEIVLCLNKADLVSPTEQQQWQDRLQQWGYQPLFI 155 (352)
T ss_pred cccceechhhhcCCEEEEEEECCCCCCCHHHHHHHHHHHHH--CCCCEEEEEEchhcCChHHHHHHHHHHHhcCCeEEEE
Confidence 34455666788999999999998765 33455666655533 4899999999999975432233334556678899999
Q ss_pred ccCCCCChHHHHHHHHHH
Q 030504 153 SAKSNYNFEKPFLYLARK 170 (176)
Q Consensus 153 S~~~~~~v~~~~~~l~~~ 170 (176)
||+++.|++++++++...
T Consensus 156 SA~tg~GI~eL~~~L~~k 173 (352)
T PRK12289 156 SVETGIGLEALLEQLRNK 173 (352)
T ss_pred EcCCCCCHHHHhhhhccc
Confidence 999999999999988643
|
|
| >cd01854 YjeQ_engC YjeQ/EngC | Back alignment and domain information |
|---|
Probab=99.25 E-value=4.7e-11 Score=84.49 Aligned_cols=88 Identities=11% Similarity=0.074 Sum_probs=69.3
Q ss_pred ccccccccEEEEEEeCCChh-hhhhHHHHHHHHhhhcCCCCEEEEEeCCCCCccccCHHHHHHHHHcCCeEEEeccCCCC
Q 030504 80 DGYYIHGQCAIIMFDVTARL-TYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNY 158 (176)
Q Consensus 80 ~~~~~~~~~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~S~~~~~ 158 (176)
+..+.++|.+++|+|+.++. ++..+..|+..+... +.|+++|+||+||.+..........+...+.+++.+|++++.
T Consensus 73 ~~i~anvD~vllV~d~~~p~~s~~~ldr~L~~~~~~--~ip~iIVlNK~DL~~~~~~~~~~~~~~~~g~~v~~vSA~~g~ 150 (287)
T cd01854 73 QVIAANVDQLVIVVSLNEPFFNPRLLDRYLVAAEAA--GIEPVIVLTKADLLDDEEEELELVEALALGYPVLAVSAKTGE 150 (287)
T ss_pred eeEEEeCCEEEEEEEcCCCCCCHHHHHHHHHHHHHc--CCCEEEEEEHHHCCChHHHHHHHHHHHhCCCeEEEEECCCCc
Confidence 34478999999999999887 777888887766654 899999999999975422222334455678899999999999
Q ss_pred ChHHHHHHHHH
Q 030504 159 NFEKPFLYLAR 169 (176)
Q Consensus 159 ~v~~~~~~l~~ 169 (176)
|+++++.++..
T Consensus 151 gi~~L~~~L~~ 161 (287)
T cd01854 151 GLDELREYLKG 161 (287)
T ss_pred cHHHHHhhhcc
Confidence 99999988764
|
YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation. |
| >cd01859 MJ1464 MJ1464 | Back alignment and domain information |
|---|
Probab=99.25 E-value=3.2e-11 Score=78.05 Aligned_cols=93 Identities=12% Similarity=0.065 Sum_probs=64.1
Q ss_pred cccccccccccEEEEEEeCCChhhhhhHHHHHHHHhhhcCCCCEEEEEeCCCCCccccCHHHHHHHHHcCCeEEEeccCC
Q 030504 77 GLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKS 156 (176)
Q Consensus 77 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~S~~~ 156 (176)
.+.++..+++|++++|+|++++...... .+...+.. .+.|+++|+||+|+.+.........+....+.+++.+||++
T Consensus 4 ~~~~~i~~~aD~vl~V~D~~~~~~~~~~-~l~~~~~~--~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~iSa~~ 80 (156)
T cd01859 4 RLVRRIIKESDVVLEVLDARDPELTRSR-KLERYVLE--LGKKLLIVLNKADLVPKEVLEKWKSIKESEGIPVVYVSAKE 80 (156)
T ss_pred HHHHHHHhhCCEEEEEeeCCCCcccCCH-HHHHHHHh--CCCcEEEEEEhHHhCCHHHHHHHHHHHHhCCCcEEEEEccc
Confidence 3456667789999999999876533321 22222222 37899999999999643222222233344567899999999
Q ss_pred CCChHHHHHHHHHHHh
Q 030504 157 NYNFEKPFLYLARKLA 172 (176)
Q Consensus 157 ~~~v~~~~~~l~~~i~ 172 (176)
+.|++++++.+.+.+.
T Consensus 81 ~~gi~~L~~~l~~~~~ 96 (156)
T cd01859 81 RLGTKILRRTIKELAK 96 (156)
T ss_pred cccHHHHHHHHHHHHh
Confidence 9999999999987654
|
This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus. |
| >KOG0468 consensus U5 snRNP-specific protein [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.21 E-value=1.4e-10 Score=87.80 Aligned_cols=116 Identities=17% Similarity=0.214 Sum_probs=80.8
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHhcCCCCCc---------ccc------ceeEEEeE--EEE---EecCcEEEEEEEeCC
Q 030504 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKK---------YEP------TIGVEVHP--LDF---FTNCGKIRFYCWDTA 70 (176)
Q Consensus 11 ~~~~~i~i~G~~~~GKttl~~~~~~~~~~~~---------~~~------~~~~~~~~--~~~---~~~~~~~~~~~~D~~ 70 (176)
....++.++|+-++|||+|+..+.....+.. |.. ..|.+... .+. ...++.+-++++|||
T Consensus 126 ~~irnV~l~GhLhhGKT~l~D~Lv~~tHp~~~~~~e~~lrytD~l~~E~eRg~sIK~~p~Tl~l~D~~~KS~l~nilDTP 205 (971)
T KOG0468|consen 126 ERIRNVGLVGHLHHGKTALMDLLVEQTHPDFSKNTEADLRYTDTLFYEQERGCSIKSTPVTLVLSDSKGKSYLMNILDTP 205 (971)
T ss_pred ceEEEEEEeeccccChhHHHHhhceeccccccccccccccccccchhhHhcCceEeecceEEEEecCcCceeeeeeecCC
Confidence 3567899999999999999998654332211 000 01222211 111 124567889999999
Q ss_pred CccccccccccccccccEEEEEEeCCChhhhhhHHHHHHHHhhhcCCCCEEEEEeCCCC
Q 030504 71 GQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDV 129 (176)
Q Consensus 71 g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl 129 (176)
||-.+....-+.++.+|++++|+|+.+.-+++.-.- +....+ .+.|+++|.||.|.
T Consensus 206 GHVnF~DE~ta~l~~sDgvVlvvDv~EGVmlntEr~-ikhaiq--~~~~i~vviNKiDR 261 (971)
T KOG0468|consen 206 GHVNFSDETTASLRLSDGVVLVVDVAEGVMLNTERI-IKHAIQ--NRLPIVVVINKVDR 261 (971)
T ss_pred CcccchHHHHHHhhhcceEEEEEEcccCceeeHHHH-HHHHHh--ccCcEEEEEehhHH
Confidence 999999888888999999999999998876654322 222222 38999999999994
|
|
| >PRK00098 GTPase RsgA; Reviewed | Back alignment and domain information |
|---|
Probab=99.20 E-value=1.1e-10 Score=83.12 Aligned_cols=84 Identities=15% Similarity=0.142 Sum_probs=63.9
Q ss_pred cccccEEEEEEeCCChhhhhh-HHHHHHHHhhhcCCCCEEEEEeCCCCCcc-ccCHHHHHHHHHcCCeEEEeccCCCCCh
Q 030504 83 YIHGQCAIIMFDVTARLTYKN-VPTWHRDLCRVCENIPIVLCGNKVDVKNR-QVKAKQVTFHRKKNLQYYEISAKSNYNF 160 (176)
Q Consensus 83 ~~~~~~~i~v~d~~~~~s~~~-~~~~~~~~~~~~~~~p~liv~nK~Dl~~~-~~~~~~~~~~~~~~~~~~~~S~~~~~~v 160 (176)
+.++|.+++|+|+.++..... +..|+..+.. .+.|+++|+||+|+... ....+....++..+++++.+||+++.|+
T Consensus 78 aaniD~vllV~d~~~p~~~~~~idr~L~~~~~--~~ip~iIVlNK~DL~~~~~~~~~~~~~~~~~g~~v~~vSA~~g~gi 155 (298)
T PRK00098 78 AANVDQAVLVFAAKEPDFSTDLLDRFLVLAEA--NGIKPIIVLNKIDLLDDLEEARELLALYRAIGYDVLELSAKEGEGL 155 (298)
T ss_pred eecCCEEEEEEECCCCCCCHHHHHHHHHHHHH--CCCCEEEEEEhHHcCCCHHHHHHHHHHHHHCCCeEEEEeCCCCccH
Confidence 489999999999988765444 3566655544 38999999999999632 2222334556667889999999999999
Q ss_pred HHHHHHHH
Q 030504 161 EKPFLYLA 168 (176)
Q Consensus 161 ~~~~~~l~ 168 (176)
+++++.+.
T Consensus 156 ~~L~~~l~ 163 (298)
T PRK00098 156 DELKPLLA 163 (298)
T ss_pred HHHHhhcc
Confidence 99998874
|
|
| >KOG3887 consensus Predicted small GTPase involved in nuclear protein import [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.19 E-value=4.4e-10 Score=75.61 Aligned_cols=157 Identities=16% Similarity=0.150 Sum_probs=97.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCcccccc---ccccccccccEEE
Q 030504 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGG---LRDGYYIHGQCAI 90 (176)
Q Consensus 14 ~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~---~~~~~~~~~~~~i 90 (176)
-+|+++|...+|||++..-...+..+.+ .-....+.....-.+.+.-+.|.+||.||+-.+-. .....++++.+.+
T Consensus 28 p~ilLMG~rRsGKsSI~KVVFhkMsPne-TlflESTski~~d~is~sfinf~v~dfPGQ~~~Fd~s~D~e~iF~~~gALi 106 (347)
T KOG3887|consen 28 PRILLMGLRRSGKSSIQKVVFHKMSPNE-TLFLESTSKITRDHISNSFINFQVWDFPGQMDFFDPSFDYEMIFRGVGALI 106 (347)
T ss_pred ceEEEEeecccCcchhhheeeeccCCCc-eeEeeccCcccHhhhhhhhcceEEeecCCccccCCCccCHHHHHhccCeEE
Confidence 3499999999999999886554443322 11111111111122334567899999999876532 3445678999999
Q ss_pred EEEeCCCh--hhhhhHHHHHHHHhhhcCCCCEEEEEeCCCCCccccCH--------HHH-HHHHH----cCCeEEEeccC
Q 030504 91 IMFDVTAR--LTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKA--------KQV-TFHRK----KNLQYYEISAK 155 (176)
Q Consensus 91 ~v~d~~~~--~s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~~~~~~~--------~~~-~~~~~----~~~~~~~~S~~ 155 (176)
+|+|+-+. +.+..+...+....+.+++..+=++..|.|-..+.... ... +++.. ..++|+-+|..
T Consensus 107 fvIDaQddy~eala~L~~~v~raykvNp~in~EVfiHKvDGLsdd~kietqrdI~qr~~d~l~d~gle~v~vsf~LTSIy 186 (347)
T KOG3887|consen 107 FVIDAQDDYMEALARLHMTVERAYKVNPNINFEVFIHKVDGLSDDFKIETQRDIHQRTNDELADAGLEKVQVSFYLTSIY 186 (347)
T ss_pred EEEechHHHHHHHHHHHHHhhheeecCCCceEEEEEEeccCCchhhhhhhHHHHHHHhhHHHHhhhhccceEEEEEeeec
Confidence 99998764 23344444444555556889999999999955422111 111 11111 23456666655
Q ss_pred CCCChHHHHHHHHHHHh
Q 030504 156 SNYNFEKPFLYLARKLA 172 (176)
Q Consensus 156 ~~~~v~~~~~~l~~~i~ 172 (176)
...+-|+|..+++++.
T Consensus 187 -DHSIfEAFSkvVQkLi 202 (347)
T KOG3887|consen 187 -DHSIFEAFSKVVQKLI 202 (347)
T ss_pred -chHHHHHHHHHHHHHh
Confidence 4688899999988765
|
|
| >PRK10463 hydrogenase nickel incorporation protein HypB; Provisional | Back alignment and domain information |
|---|
Probab=99.18 E-value=1.9e-10 Score=80.43 Aligned_cols=55 Identities=20% Similarity=0.161 Sum_probs=40.4
Q ss_pred CCCEEEEEeCCCCCccc--cCHHHHHHHHHc--CCeEEEeccCCCCChHHHHHHHHHHH
Q 030504 117 NIPIVLCGNKVDVKNRQ--VKAKQVTFHRKK--NLQYYEISAKSNYNFEKPFLYLARKL 171 (176)
Q Consensus 117 ~~p~liv~nK~Dl~~~~--~~~~~~~~~~~~--~~~~~~~S~~~~~~v~~~~~~l~~~i 171 (176)
..+-++|+||+|+.+.. .........+.. ..+++.+|+++|+|++++.+||..+.
T Consensus 230 ~~ADIVVLNKiDLl~~~~~dle~~~~~lr~lnp~a~I~~vSA~tGeGld~L~~~L~~~~ 288 (290)
T PRK10463 230 AAASLMLLNKVDLLPYLNFDVEKCIACAREVNPEIEIILISATSGEGMDQWLNWLETQR 288 (290)
T ss_pred hcCcEEEEEhHHcCcccHHHHHHHHHHHHhhCCCCcEEEEECCCCCCHHHHHHHHHHhh
Confidence 45668999999997532 222333444443 57899999999999999999998753
|
|
| >TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains | Back alignment and domain information |
|---|
Probab=99.18 E-value=2.9e-10 Score=86.86 Aligned_cols=119 Identities=10% Similarity=0.080 Sum_probs=70.4
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCcccccc-------c---ccc
Q 030504 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGG-------L---RDG 81 (176)
Q Consensus 12 ~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~-------~---~~~ 81 (176)
..++|+++|.+|+||||++|.+++...........+++.. ........+..+.++||||...... . ...
T Consensus 117 fslrIvLVGKTGVGKSSLINSILGekvf~vss~~~~TTr~-~ei~~~idG~~L~VIDTPGL~dt~~dq~~neeILk~Ik~ 195 (763)
T TIGR00993 117 FSLNILVLGKSGVGKSATINSIFGEVKFSTDAFGMGTTSV-QEIEGLVQGVKIRVIDTPGLKSSASDQSKNEKILSSVKK 195 (763)
T ss_pred cceEEEEECCCCCCHHHHHHHHhccccccccCCCCCceEE-EEEEEEECCceEEEEECCCCCccccchHHHHHHHHHHHH
Confidence 4579999999999999999998865432221111122221 1111122346789999999654321 1 111
Q ss_pred ccc--cccEEEEEEeCCChhhhhhHHHHHHHHhhhcC---CCCEEEEEeCCCCCc
Q 030504 82 YYI--HGQCAIIMFDVTARLTYKNVPTWHRDLCRVCE---NIPIVLCGNKVDVKN 131 (176)
Q Consensus 82 ~~~--~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~---~~p~liv~nK~Dl~~ 131 (176)
++. .+|++++|..++.......-..+++.+...+. -..++||.|+.|...
T Consensus 196 ~Lsk~gpDVVLlV~RLd~~~~D~eD~~aLr~Iq~lFG~~Iwk~tIVVFThgD~lp 250 (763)
T TIGR00993 196 FIKKNPPDIVLYVDRLDMQTRDSNDLPLLRTITDVLGPSIWFNAIVTLTHAASAP 250 (763)
T ss_pred HHhcCCCCEEEEEEeCCCccccHHHHHHHHHHHHHhCHHhHcCEEEEEeCCccCC
Confidence 223 47999999887643322222244555544442 356788899999764
|
The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M. |
| >cd01855 YqeH YqeH | Back alignment and domain information |
|---|
Probab=99.18 E-value=1.3e-10 Score=77.63 Aligned_cols=93 Identities=17% Similarity=0.129 Sum_probs=64.7
Q ss_pred cccccccccccccEEEEEEeCCChhhhhhHHHHHHHHhhhcCCCCEEEEEeCCCCCccccCHH-HHHHH-----HHcCC-
Q 030504 75 FGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAK-QVTFH-----RKKNL- 147 (176)
Q Consensus 75 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~~~~~~~~-~~~~~-----~~~~~- 147 (176)
+...+..+++++|++++|+|++++... |...+.....+.|+++|+||+|+........ ...+. +..+.
T Consensus 24 ~~~~l~~~~~~ad~il~VvD~~~~~~~-----~~~~l~~~~~~~~~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (190)
T cd01855 24 ILNLLSSISPKKALVVHVVDIFDFPGS-----LIPRLRLFGGNNPVILVGNKIDLLPKDKNLVRIKNWLRAKAAAGLGLK 98 (190)
T ss_pred HHHHHHhcccCCcEEEEEEECccCCCc-----cchhHHHhcCCCcEEEEEEchhcCCCCCCHHHHHHHHHHHHHhhcCCC
Confidence 466777888999999999999875421 1112222224789999999999975433222 22222 22332
Q ss_pred --eEEEeccCCCCChHHHHHHHHHHHh
Q 030504 148 --QYYEISAKSNYNFEKPFLYLARKLA 172 (176)
Q Consensus 148 --~~~~~S~~~~~~v~~~~~~l~~~i~ 172 (176)
.++.+||+++.|++++++++.+.+.
T Consensus 99 ~~~i~~vSA~~~~gi~eL~~~l~~~l~ 125 (190)
T cd01855 99 PKDVILISAKKGWGVEELINAIKKLAK 125 (190)
T ss_pred cccEEEEECCCCCCHHHHHHHHHHHhh
Confidence 6899999999999999999988653
|
YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. |
| >KOG0460 consensus Mitochondrial translation elongation factor Tu [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.17 E-value=1.9e-10 Score=80.86 Aligned_cols=145 Identities=18% Similarity=0.126 Sum_probs=102.7
Q ss_pred CCCCeeEEEEEcCCCCcHHHHHHHHhc-----C-----CCCC----ccccceeEEEeEEEEEecCcEEEEEEEeCCCccc
Q 030504 9 VDYPSFKLVIVGDGGTGKTTFVKRHLT-----G-----EFEK----KYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK 74 (176)
Q Consensus 9 ~~~~~~~i~i~G~~~~GKttl~~~~~~-----~-----~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~ 74 (176)
.+.+++||.-+|+...|||||..++.. | .+.+ .-....|++.....+.++.....+.-.|.|||..
T Consensus 50 R~KPHvNVGTIGHVDHGKTTLTaAITkila~~g~A~~~kydeID~APEEkaRGITIn~aHveYeTa~RhYaH~DCPGHAD 129 (449)
T KOG0460|consen 50 RDKPHVNVGTIGHVDHGKTTLTAAITKILAEKGGAKFKKYDEIDKAPEEKARGITINAAHVEYETAKRHYAHTDCPGHAD 129 (449)
T ss_pred cCCCcccccccccccCCchhHHHHHHHHHHhccccccccHhhhhcChhhhhccceEeeeeeeeeccccccccCCCCchHH
Confidence 567899999999999999999988543 1 1110 1122457777777777776667778889999999
Q ss_pred cccccccccccccEEEEEEeCCChhhhhhHHHHHHHHhhhcCCCCEEEEEeCCCCCccc-----cCHHHHHHHHHcC---
Q 030504 75 FGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQ-----VKAKQVTFHRKKN--- 146 (176)
Q Consensus 75 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~~~~-----~~~~~~~~~~~~~--- 146 (176)
|-...-.-..+-|++|+|+.++|...-+.-++++. .+...-..+++++||.|+.++. +..+.+++...++
T Consensus 130 YIKNMItGaaqMDGaILVVaatDG~MPQTrEHlLL--ArQVGV~~ivvfiNKvD~V~d~e~leLVEmE~RElLse~gf~G 207 (449)
T KOG0460|consen 130 YIKNMITGAAQMDGAILVVAATDGPMPQTREHLLL--ARQVGVKHIVVFINKVDLVDDPEMLELVEMEIRELLSEFGFDG 207 (449)
T ss_pred HHHHhhcCccccCceEEEEEcCCCCCcchHHHHHH--HHHcCCceEEEEEecccccCCHHHHHHHHHHHHHHHHHcCCCC
Confidence 87766666678899999999999876666655432 2222234578889999998533 3345567777765
Q ss_pred --CeEEEeccC
Q 030504 147 --LQYYEISAK 155 (176)
Q Consensus 147 --~~~~~~S~~ 155 (176)
++++.-||+
T Consensus 208 d~~PvI~GSAL 218 (449)
T KOG0460|consen 208 DNTPVIRGSAL 218 (449)
T ss_pred CCCCeeecchh
Confidence 567776654
|
|
| >PRK12288 GTPase RsgA; Reviewed | Back alignment and domain information |
|---|
Probab=99.15 E-value=3.7e-10 Score=81.64 Aligned_cols=86 Identities=14% Similarity=0.115 Sum_probs=68.3
Q ss_pred cccccEEEEEEeCCChhhhhhHHHHHHHHhhhcCCCCEEEEEeCCCCCcccc---CHHHHHHHHHcCCeEEEeccCCCCC
Q 030504 83 YIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQV---KAKQVTFHRKKNLQYYEISAKSNYN 159 (176)
Q Consensus 83 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~~~~~---~~~~~~~~~~~~~~~~~~S~~~~~~ 159 (176)
..++|.+++|+++....++..+..|+..... .+.|.++|+||+|+.+... ..+....++..+++++++||+++.|
T Consensus 118 aANvD~vlIV~s~~p~~s~~~Ldr~L~~a~~--~~i~~VIVlNK~DL~~~~~~~~~~~~~~~y~~~g~~v~~vSA~tg~G 195 (347)
T PRK12288 118 AANIDQIVIVSAVLPELSLNIIDRYLVACET--LGIEPLIVLNKIDLLDDEGRAFVNEQLDIYRNIGYRVLMVSSHTGEG 195 (347)
T ss_pred EEEccEEEEEEeCCCCCCHHHHHHHHHHHHh--cCCCEEEEEECccCCCcHHHHHHHHHHHHHHhCCCeEEEEeCCCCcC
Confidence 4568999999999877888888888775544 3789999999999975432 2233345566789999999999999
Q ss_pred hHHHHHHHHHH
Q 030504 160 FEKPFLYLARK 170 (176)
Q Consensus 160 v~~~~~~l~~~ 170 (176)
++++++++...
T Consensus 196 ideL~~~L~~k 206 (347)
T PRK12288 196 LEELEAALTGR 206 (347)
T ss_pred HHHHHHHHhhC
Confidence 99999998753
|
|
| >COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.13 E-value=3.2e-09 Score=75.57 Aligned_cols=137 Identities=16% Similarity=0.283 Sum_probs=84.5
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHhcCCCCCc----------cccceeEEEeEEEEEecCcEEEEEEEeCCCcccc---ccc
Q 030504 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKK----------YEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKF---GGL 78 (176)
Q Consensus 12 ~~~~i~i~G~~~~GKttl~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~---~~~ 78 (176)
-.++|+++|+.|+|||||+|.++....... ..++..+......+..++..+.+.+.||||.-.+ ...
T Consensus 22 i~f~im~~G~sG~GKttfiNtL~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~~~l~vIDtpGfGD~idNs~~ 101 (373)
T COG5019 22 IDFTIMVVGESGLGKTTFINTLFGTSLVDETEIDDIRAEGTSPTLEIKITKAELEEDGFHLNLTVIDTPGFGDFIDNSKC 101 (373)
T ss_pred CceEEEEecCCCCchhHHHHhhhHhhccCCCCccCcccccCCcceEEEeeeeeeecCCeEEEEEEeccCCcccccccccc
Confidence 468999999999999999999876422211 2344444555555555667889999999993211 111
Q ss_pred ccc-----------------------cc--ccccEEEEEEeCCChhhhhhHHHHHHHHhhhcCCCCEEEEEeCCCCCccc
Q 030504 79 RDG-----------------------YY--IHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQ 133 (176)
Q Consensus 79 ~~~-----------------------~~--~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~~~~ 133 (176)
|.. -+ .++|+++|.+.++. +++..+. +..+.+..+.+.++.|+.|+|.....
T Consensus 102 we~I~~yI~~q~d~yl~~E~~~~R~~~~~D~RVH~cLYFI~Ptg-h~l~~~D--Ie~Mk~ls~~vNlIPVI~KaD~lT~~ 178 (373)
T COG5019 102 WEPIVDYIDDQFDQYLDEEQKIKRNPKFKDTRVHACLYFIRPTG-HGLKPLD--IEAMKRLSKRVNLIPVIAKADTLTDD 178 (373)
T ss_pred HHHHHHHHHHHHHHHHHHhhccccccccccCceEEEEEEecCCC-CCCCHHH--HHHHHHHhcccCeeeeeeccccCCHH
Confidence 111 11 14678888887663 3333333 12333333477889999999976432
Q ss_pred ----cCHHHHHHHHHcCCeEEE
Q 030504 134 ----VKAKQVTFHRKKNLQYYE 151 (176)
Q Consensus 134 ----~~~~~~~~~~~~~~~~~~ 151 (176)
.....++....+++++|.
T Consensus 179 El~~~K~~I~~~i~~~nI~vf~ 200 (373)
T COG5019 179 ELAEFKERIREDLEQYNIPVFD 200 (373)
T ss_pred HHHHHHHHHHHHHHHhCCceeC
Confidence 233445666677777774
|
|
| >COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.13 E-value=2.7e-09 Score=76.33 Aligned_cols=84 Identities=20% Similarity=0.104 Sum_probs=53.8
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEe------------c----CcEEEEEEEeCCCccc--
Q 030504 13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFT------------N----CGKIRFYCWDTAGQEK-- 74 (176)
Q Consensus 13 ~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~----~~~~~~~~~D~~g~~~-- 74 (176)
.+++.|+|.|+||||||.|.+.........-|...++-....+.+ . .....+.++|.+|.-.
T Consensus 2 ~l~~GIVGlPNVGKSTlFnAlT~~~a~~aNYPF~TIePN~Giv~v~d~rl~~L~~~~~c~~k~~~~~ve~vDIAGLV~GA 81 (372)
T COG0012 2 SLKIGIVGLPNVGKSTLFNALTKAGAEIANYPFCTIEPNVGVVYVPDCRLDELAEIVKCPPKIRPAPVEFVDIAGLVKGA 81 (372)
T ss_pred CceeEEecCCCCcHHHHHHHHHcCCccccCCCcccccCCeeEEecCchHHHHHHHhcCCCCcEEeeeeEEEEecccCCCc
Confidence 478999999999999999998765533222222212222222111 1 1235688999998533
Q ss_pred -----cccccccccccccEEEEEEeCC
Q 030504 75 -----FGGLRDGYYIHGQCAIIMFDVT 96 (176)
Q Consensus 75 -----~~~~~~~~~~~~~~~i~v~d~~ 96 (176)
........++++|+++.|+++.
T Consensus 82 s~GeGLGNkFL~~IRevdaI~hVVr~f 108 (372)
T COG0012 82 SKGEGLGNKFLDNIREVDAIIHVVRCF 108 (372)
T ss_pred ccCCCcchHHHHhhhhcCeEEEEEEec
Confidence 2334555678999999999977
|
|
| >KOG2655 consensus Septin family protein (P-loop GTPase) [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.12 E-value=4.6e-09 Score=75.18 Aligned_cols=141 Identities=17% Similarity=0.308 Sum_probs=83.1
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCCCCC---------ccccceeEEEeEEEEEecCcEEEEEEEeCCCcccc---cc---
Q 030504 13 SFKLVIVGDGGTGKTTFVKRHLTGEFEK---------KYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKF---GG--- 77 (176)
Q Consensus 13 ~~~i~i~G~~~~GKttl~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~---~~--- 77 (176)
.++++++|++|.|||||+|.++...+.. ....+..+........-++-.+++++.||||.-.. ..
T Consensus 21 ~ftlmvvG~sGlGKsTfiNsLf~~~l~~~~~~~~~~~~~~~t~~i~~~~~~iee~g~~l~LtvidtPGfGD~vdns~~w~ 100 (366)
T KOG2655|consen 21 DFTLMVVGESGLGKSTFINSLFLTDLSGNREVPGASERIKETVEIESTKVEIEENGVKLNLTVIDTPGFGDAVDNSNCWR 100 (366)
T ss_pred ceEEEEecCCCccHHHHHHHHHhhhccCCcccCCcccCccccceeeeeeeeecCCCeEEeeEEeccCCCcccccccccch
Confidence 5899999999999999999976543321 11223333334444444566788999999993111 00
Q ss_pred -------------------ccccccc--cccEEEEEEeCCChhhhhhHHHHHHHHhhhcCCCCEEEEEeCCCCCcccc--
Q 030504 78 -------------------LRDGYYI--HGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQV-- 134 (176)
Q Consensus 78 -------------------~~~~~~~--~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~~~~~-- 134 (176)
..+..+. ++|+++|.+.++. +++..+.- ..+.+......++.|..|+|......
T Consensus 101 pi~~yi~~q~~~yl~~E~~~~R~~~~D~RVH~cLYFI~P~g-hgL~p~Di--~~Mk~l~~~vNiIPVI~KaD~lT~~El~ 177 (366)
T KOG2655|consen 101 PIVNYIDSQFDQYLDEESRLNRSKIKDNRVHCCLYFISPTG-HGLKPLDI--EFMKKLSKKVNLIPVIAKADTLTKDELN 177 (366)
T ss_pred hhhHHHHHHHHHHHhhhccCCcccccCCceEEEEEEeCCCC-CCCcHhhH--HHHHHHhccccccceeeccccCCHHHHH
Confidence 1111222 5688888888763 33333331 22223334778888889999765332
Q ss_pred --CHHHHHHHHHcCCeEEEeccCC
Q 030504 135 --KAKQVTFHRKKNLQYYEISAKS 156 (176)
Q Consensus 135 --~~~~~~~~~~~~~~~~~~S~~~ 156 (176)
....+.-....++++|......
T Consensus 178 ~~K~~I~~~i~~~nI~vf~fp~~~ 201 (366)
T KOG2655|consen 178 QFKKRIRQDIEEHNIKVFDFPTDE 201 (366)
T ss_pred HHHHHHHHHHHHcCcceecCCCCc
Confidence 2334455666677666654443
|
|
| >KOG0410 consensus Predicted GTP binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.08 E-value=4.2e-10 Score=78.67 Aligned_cols=149 Identities=16% Similarity=0.099 Sum_probs=90.7
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccc---------ccccccccc
Q 030504 13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK---------FGGLRDGYY 83 (176)
Q Consensus 13 ~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~---------~~~~~~~~~ 83 (176)
.--|.++|-.++|||||++++..-...++..-....+......... .+-.+-+.||.|.-. |++. ..-.
T Consensus 178 ~pviavVGYTNaGKsTLikaLT~Aal~p~drLFATLDpT~h~a~Lp-sg~~vlltDTvGFisdLP~~LvaAF~AT-LeeV 255 (410)
T KOG0410|consen 178 SPVIAVVGYTNAGKSTLIKALTKAALYPNDRLFATLDPTLHSAHLP-SGNFVLLTDTVGFISDLPIQLVAAFQAT-LEEV 255 (410)
T ss_pred CceEEEEeecCccHHHHHHHHHhhhcCccchhheeccchhhhccCC-CCcEEEEeechhhhhhCcHHHHHHHHHH-HHHH
Confidence 3468999999999999999977444333322222122222222222 233466779998321 1111 1124
Q ss_pred ccccEEEEEEeCCChhhhhhHHHHHHHHhhhc-CCCC----EEEEEeCCCCCccccCHHHHHHHHHcCCeEEEeccCCCC
Q 030504 84 IHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-ENIP----IVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNY 158 (176)
Q Consensus 84 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p----~liv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~S~~~~~ 158 (176)
..+|.++.|.|++.|..-+.....+..+.+.- +..| ++=|-||.|........+.. + -+.+||++|+
T Consensus 256 aeadlllHvvDiShP~ae~q~e~Vl~vL~~igv~~~pkl~~mieVdnkiD~e~~~~e~E~n------~--~v~isaltgd 327 (410)
T KOG0410|consen 256 AEADLLLHVVDISHPNAEEQRETVLHVLNQIGVPSEPKLQNMIEVDNKIDYEEDEVEEEKN------L--DVGISALTGD 327 (410)
T ss_pred hhcceEEEEeecCCccHHHHHHHHHHHHHhcCCCcHHHHhHHHhhccccccccccCccccC------C--ccccccccCc
Confidence 57899999999999976655555555555441 2223 45566788876654433321 1 3679999999
Q ss_pred ChHHHHHHHHHHH
Q 030504 159 NFEKPFLYLARKL 171 (176)
Q Consensus 159 ~v~~~~~~l~~~i 171 (176)
|++++.+.+-.++
T Consensus 328 gl~el~~a~~~kv 340 (410)
T KOG0410|consen 328 GLEELLKAEETKV 340 (410)
T ss_pred cHHHHHHHHHHHh
Confidence 9999888765544
|
|
| >PF00503 G-alpha: G-protein alpha subunit; InterPro: IPR001019 Guanine nucleotide binding proteins (G proteins) are membrane-associated, heterotrimeric proteins composed of three subunits: alpha (IPR001019 from INTERPRO), beta (IPR001632 from INTERPRO) and gamma (IPR001770 from INTERPRO) [] | Back alignment and domain information |
|---|
Probab=99.07 E-value=4.9e-10 Score=82.77 Aligned_cols=112 Identities=17% Similarity=0.218 Sum_probs=75.6
Q ss_pred cEEEEEEEeCCCccccccccccccccccEEEEEEeCCChh-------hhhhHH---HHHHHHhh--hcCCCCEEEEEeCC
Q 030504 60 GKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARL-------TYKNVP---TWHRDLCR--VCENIPIVLCGNKV 127 (176)
Q Consensus 60 ~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~-------s~~~~~---~~~~~~~~--~~~~~p~liv~nK~ 127 (176)
....+.++|++|+..-+..|..++.+++++|||+++++-. ....+. .++..+.. .+.+.|+++++||.
T Consensus 234 ~~~~~~~~DvGGqr~eRkKW~~~F~~v~~vif~vsls~ydq~~~ed~~~nrl~esl~lF~~i~~~~~~~~~~iil~lnK~ 313 (389)
T PF00503_consen 234 GSRKFRLIDVGGQRSERKKWIHCFEDVTAVIFVVSLSEYDQTLYEDPNTNRLHESLNLFESICNNPWFKNTPIILFLNKI 313 (389)
T ss_dssp TTEEEEEEEETSSGGGGGGGGGGGTTESEEEEEEEGGGGGSBESSSTTSBHHHHHHHHHHHHHTSGGGTTSEEEEEEE-H
T ss_pred cccccceecCCCCchhhhhHHHHhccccEEEEeecccchhhhhcccchHHHHHHHHHHHHHHHhCcccccCceEEeeecH
Confidence 5567899999999998999999999999999999988432 122333 33333332 23689999999999
Q ss_pred CCCcc--------------------ccCHHHHHHHHH------------cCCeEEEeccCCCCChHHHHHHHHHHH
Q 030504 128 DVKNR--------------------QVKAKQVTFHRK------------KNLQYYEISAKSNYNFEKPFLYLARKL 171 (176)
Q Consensus 128 Dl~~~--------------------~~~~~~~~~~~~------------~~~~~~~~S~~~~~~v~~~~~~l~~~i 171 (176)
|+..+ ........+.+. ..+.++.|+|.+..+++.+|+.+.+.|
T Consensus 314 D~f~~Kl~~~~~l~~~fp~y~g~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~h~t~a~d~~~~~~v~~~v~~~i 389 (389)
T PF00503_consen 314 DLFEEKLKKGPKLSKYFPDYTGDRPNDVDSAIKFIKNKFLRLNRNNSPSRRIYVHFTCATDTENIRKVFNAVKDII 389 (389)
T ss_dssp HHHHHHTTTSSCGGGTSTTGGSH-TSSHHHHHHHHHHHHHCTHSTTTTCS-EEEEEESTTSHHHHHHHHHHHHHHH
T ss_pred HHHHHHccCCCchHhhCCCCCCCcccCHHHHHHHHHHHHHHhccCCCCCcceEEEEeeecccHHHHHHHHHhcCcC
Confidence 95321 011122222222 223567899999999999998877643
|
G proteins and their receptors (GPCRs) form one of the most prevalent signalling systems in mammalian cells, regulating systems as diverse as sensory perception, cell growth and hormonal regulation []. At the cell surface, the binding of ligands such as hormones and neurotransmitters to a GPCR activates the receptor by causing a conformational change, which in turn activates the bound G protein on the intracellular-side of the membrane. The activated receptor promotes the exchange of bound GDP for GTP on the G protein alpha subunit. GTP binding changes the conformation of switch regions within the alpha subunit, which allows the bound trimeric G protein (inactive) to be released from the receptor, and to dissociate into active alpha subunit (GTP-bound) and beta/gamma dimer. The alpha subunit and the beta/gamma dimer go on to activate distinct downstream effectors, such as adenylyl cyclase, phosphodiesterases, phospholipase C, and ion channels. These effectors in turn regulate the intracellular concentrations of secondary messengers, such as cAMP, diacylglycerol, sodium or calcium cations, which ultimately lead to a physiological response, usually via the downstream regulation of gene transcription. The cycle is completed by the hydrolysis of alpha subunit-bound GTP to GDP, resulting in the re-association of the alpha and beta/gamma subunits and their binding to the receptor, which terminates the signal []. The length of the G protein signal is controlled by the duration of the GTP-bound alpha subunit, which can be regulated by RGS (regulator of G protein signalling) proteins (IPR000342 from INTERPRO) or by covalent modifications []. There are several isoforms of each subunit, many of which have splice variants, which together can make up hundreds of combinations of G proteins. The specific combination of subunits in heterotrimeric G proteins affects not only which receptor it can bind to, but also which downstream target is affected, providing the means to target specific physiological processes in response to specific external stimuli [, ]. G proteins carry lipid modifications on one or more of their subunits to target them to the plasma membrane and to contribute to protein interactions. This family consists of the G protein alpha subunit, which acts as a weak GTPase. G protein classes are defined based on the sequence and function of their alpha subunits, which in mammals fall into four main categories: G(S)alpha, G(Q)alpha, G(I)alpha and G(12)alpha; there are also fungal and plant classes of alpha subunits. The alpha subunit consists of two domains: a GTP-binding domain and a helical insertion domain (IPR011025 from INTERPRO). The GTP-binding domain is homologous to Ras-like small GTPases, and includes switch regions I and II, which change conformation during activation. The switch regions are loops of alpha-helices with conformations sensitive to guanine nucleotides. The helical insertion domain is inserted into the GTP-binding domain before switch region I and is unique to heterotrimeric G proteins. This helical insertion domain functions to sequester the guanine nucleotide at the interface with the GTP-binding domain and must be displaced to enable nucleotide dissociation.; GO: 0004871 signal transducer activity, 0019001 guanyl nucleotide binding, 0007186 G-protein coupled receptor protein signaling pathway; PDB: 3QI2_B 3QE0_A 2IK8_A 2OM2_A 2GTP_B 2XNS_B 3ONW_B 1KJY_A 2EBC_A 1Y3A_B .... |
| >PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components | Back alignment and domain information |
|---|
Probab=99.05 E-value=1.2e-09 Score=74.67 Aligned_cols=99 Identities=8% Similarity=0.022 Sum_probs=59.1
Q ss_pred EEEEEEeCCCccccccccccccccccEEEEEEeCCChhhhhhHHHHHHHHhhhcCCCCEEEEEeCCCCCccccCH-HHH-
Q 030504 62 IRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKA-KQV- 139 (176)
Q Consensus 62 ~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~~~~~~~-~~~- 139 (176)
+.+.+++|.|-=..+ -....-+|.+++|..+...+..+.++.=+..+ .=++|.||+|........ +..
T Consensus 122 ~D~IiiETVGvGQsE---~~I~~~aD~~v~v~~Pg~GD~iQ~~KaGimEi-------aDi~vVNKaD~~gA~~~~~~l~~ 191 (266)
T PF03308_consen 122 FDVIIIETVGVGQSE---VDIADMADTVVLVLVPGLGDEIQAIKAGIMEI-------ADIFVVNKADRPGADRTVRDLRS 191 (266)
T ss_dssp -SEEEEEEESSSTHH---HHHHTTSSEEEEEEESSTCCCCCTB-TTHHHH--------SEEEEE--SHHHHHHHHHHHHH
T ss_pred CCEEEEeCCCCCccH---HHHHHhcCeEEEEecCCCccHHHHHhhhhhhh-------ccEEEEeCCChHHHHHHHHHHHH
Confidence 556777776622111 12234679999999999887766665322222 447889999966533222 222
Q ss_pred --HHHHH--cC--CeEEEeccCCCCChHHHHHHHHHH
Q 030504 140 --TFHRK--KN--LQYYEISAKSNYNFEKPFLYLARK 170 (176)
Q Consensus 140 --~~~~~--~~--~~~~~~S~~~~~~v~~~~~~l~~~ 170 (176)
.+... .+ .+++.|||.++.|++++++.+.+.
T Consensus 192 ~l~l~~~~~~~W~ppV~~tsA~~~~Gi~eL~~~i~~~ 228 (266)
T PF03308_consen 192 MLHLLREREDGWRPPVLKTSALEGEGIDELWEAIDEH 228 (266)
T ss_dssp HHHHCSTSCTSB--EEEEEBTTTTBSHHHHHHHHHHH
T ss_pred HHhhccccccCCCCCEEEEEeCCCCCHHHHHHHHHHH
Confidence 22111 12 489999999999999999998764
|
In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A. |
| >KOG1547 consensus Septin CDC10 and related P-loop GTPases [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms; Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.03 E-value=9.9e-09 Score=69.15 Aligned_cols=142 Identities=15% Similarity=0.204 Sum_probs=80.1
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCCCCC---------ccccceeEEEeEEEEEecCcEEEEEEEeCCCcccc---ccccc
Q 030504 13 SFKLVIVGDGGTGKTTFVKRHLTGEFEK---------KYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKF---GGLRD 80 (176)
Q Consensus 13 ~~~i~i~G~~~~GKttl~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~---~~~~~ 80 (176)
.++|+++|.+|.|||||+|.++...... .+..|..+......+..++-..++++.||||.-.. ...|.
T Consensus 46 ~FNIMVVgqSglgkstlinTlf~s~v~~~s~~~~~~~p~pkT~eik~~thvieE~gVklkltviDTPGfGDqInN~ncWe 125 (336)
T KOG1547|consen 46 DFNIMVVGQSGLGKSTLINTLFKSHVSDSSSSDNSAEPIPKTTEIKSITHVIEEKGVKLKLTVIDTPGFGDQINNDNCWE 125 (336)
T ss_pred ceEEEEEecCCCCchhhHHHHHHHHHhhccCCCcccCcccceEEEEeeeeeeeecceEEEEEEecCCCcccccCccchhH
Confidence 6899999999999999999977543221 11222222222222333455678899999993211 11222
Q ss_pred c-----------------------ccc--cccEEEEEEeCCChhhhhhHH-HHHHHHhhhcCCCCEEEEEeCCCCCc---
Q 030504 81 G-----------------------YYI--HGQCAIIMFDVTARLTYKNVP-TWHRDLCRVCENIPIVLCGNKVDVKN--- 131 (176)
Q Consensus 81 ~-----------------------~~~--~~~~~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~p~liv~nK~Dl~~--- 131 (176)
. .+. +.++++|.+.++ ++++..+. .++..+.+ -..++-|.-|+|...
T Consensus 126 PI~kyIneQye~yL~eElni~R~kripDTRVHcclyFi~pt-GhsLrplDieflkrLt~---vvNvvPVIakaDtlTleE 201 (336)
T KOG1547|consen 126 PIEKYINEQYEQYLREELNIAREKRIPDTRVHCCLYFIPPT-GHSLRPLDIEFLKRLTE---VVNVVPVIAKADTLTLEE 201 (336)
T ss_pred HHHHHHHHHHHHHHHHHHhHHhhhcCCCceEEEEEEEeCCC-CCccCcccHHHHHHHhh---hheeeeeEeecccccHHH
Confidence 1 122 356666666655 44444443 23333333 456777788999543
Q ss_pred -cccCHHHHHHHHHcCCeEEEeccCCCC
Q 030504 132 -RQVKAKQVTFHRKKNLQYYEISAKSNY 158 (176)
Q Consensus 132 -~~~~~~~~~~~~~~~~~~~~~S~~~~~ 158 (176)
....+..++-+..+++.++.--+-+.+
T Consensus 202 r~~FkqrI~~el~~~~i~vYPq~~fded 229 (336)
T KOG1547|consen 202 RSAFKQRIRKELEKHGIDVYPQDSFDED 229 (336)
T ss_pred HHHHHHHHHHHHHhcCcccccccccccc
Confidence 222334456666778777765555443
|
|
| >COG5258 GTPBP1 GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.03 E-value=6.8e-09 Score=74.36 Aligned_cols=159 Identities=13% Similarity=0.109 Sum_probs=97.8
Q ss_pred CCCCCeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccce------------e----EEEeEEEE------Ee--------
Q 030504 8 TVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTI------------G----VEVHPLDF------FT-------- 57 (176)
Q Consensus 8 ~~~~~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~------------~----~~~~~~~~------~~-------- 57 (176)
...++++.+...|+.+.|||||+-.+..|+.+...-.+. | +++..+-+ ..
T Consensus 112 ~~~~~hv~Vg~aGhVdhGKSTlvG~LvtG~~DDG~G~tR~~ldv~kHEverGlsa~iS~~v~Gf~dgk~~rlknPld~aE 191 (527)
T COG5258 112 EEAPEHVLVGVAGHVDHGKSTLVGVLVTGRLDDGDGATRSYLDVQKHEVERGLSADISLRVYGFDDGKVVRLKNPLDEAE 191 (527)
T ss_pred cCCCceEEEEEeccccCCcceEEEEEEecCCCCCCcchhhhhhhhhHHHhhccccceeEEEEEecCCceEeecCcccHHH
Confidence 345788999999999999999999888876643322211 1 11111111 00
Q ss_pred -----cCcEEEEEEEeCCCcccccc-ccccc-cccccEEEEEEeCCChhhhhhHHHHHHHHhhhcCCCCEEEEEeCCCCC
Q 030504 58 -----NCGKIRFYCWDTAGQEKFGG-LRDGY-YIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVK 130 (176)
Q Consensus 58 -----~~~~~~~~~~D~~g~~~~~~-~~~~~-~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~ 130 (176)
+...--+.+.||.|||.+-. ..+.. -.+.|-.++++.+++..+--.-+++- .+.. -..|++++.||+|+.
T Consensus 192 ~~~vv~~aDklVsfVDtvGHEpwLrTtirGL~gqk~dYglLvVaAddG~~~~tkEHLg-i~~a--~~lPviVvvTK~D~~ 268 (527)
T COG5258 192 KAAVVKRADKLVSFVDTVGHEPWLRTTIRGLLGQKVDYGLLVVAADDGVTKMTKEHLG-IALA--MELPVIVVVTKIDMV 268 (527)
T ss_pred HhHhhhhcccEEEEEecCCccHHHHHHHHHHhccccceEEEEEEccCCcchhhhHhhh-hhhh--hcCCEEEEEEecccC
Confidence 11113478899999998743 33333 34679999999998876433222221 1122 289999999999987
Q ss_pred ccccC----HHHHHHH----------------------HH---cCCeEEEeccCCCCChHHHHHHHHH
Q 030504 131 NRQVK----AKQVTFH----------------------RK---KNLQYYEISAKSNYNFEKPFLYLAR 169 (176)
Q Consensus 131 ~~~~~----~~~~~~~----------------------~~---~~~~~~~~S~~~~~~v~~~~~~l~~ 169 (176)
++... ++...+. .+ .-.|+|.+|+.+|+|++-+.+.+..
T Consensus 269 ~ddr~~~v~~ei~~~Lk~v~Rip~~vk~~~d~v~aa~a~k~~~~vvPi~~tSsVTg~GldlL~e~f~~ 336 (527)
T COG5258 269 PDDRFQGVVEEISALLKRVGRIPLIVKDTDDVVLAAKAMKAGRGVVPIFYTSSVTGEGLDLLDEFFLL 336 (527)
T ss_pred cHHHHHHHHHHHHHHHHHhcccceeeeccchhHHhhhhhhcCCceEEEEEEecccCccHHHHHHHHHh
Confidence 63311 1111111 11 1258999999999998877666543
|
|
| >cd01857 HSR1_MMR1 HSR1/MMR1 | Back alignment and domain information |
|---|
Probab=99.02 E-value=9e-10 Score=70.06 Aligned_cols=54 Identities=19% Similarity=0.207 Sum_probs=39.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCc
Q 030504 15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQ 72 (176)
Q Consensus 15 ~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~ 72 (176)
+++++|.+|+|||||+|++...... ......|.+.....+..+. .+.+|||||.
T Consensus 85 ~~~~~G~~~vGKstlin~l~~~~~~-~~~~~~~~~~~~~~~~~~~---~~~i~DtpG~ 138 (141)
T cd01857 85 TIGLVGYPNVGKSSLINALVGKKKV-SVSATPGKTKHFQTIFLTP---TITLCDCPGL 138 (141)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCce-eeCCCCCcccceEEEEeCC---CEEEEECCCc
Confidence 8999999999999999998766543 3344455555555555543 4689999995
|
Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus. |
| >TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH | Back alignment and domain information |
|---|
Probab=99.02 E-value=1.2e-09 Score=79.74 Aligned_cols=94 Identities=18% Similarity=0.227 Sum_probs=68.6
Q ss_pred ccccccccccccccccEEEEEEeCCChhhhhhHHHHHHHHhhhcCCCCEEEEEeCCCCCccccC-HHHH----HHHHHcC
Q 030504 72 QEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVK-AKQV----TFHRKKN 146 (176)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~~~~~~-~~~~----~~~~~~~ 146 (176)
.+.+..+...++..++++++|+|+.+.. ..|...+.+...+.|+++|+||+|+..+... .+.. .+++..+
T Consensus 50 ~e~f~~~l~~~~~~~~~Il~VvD~~d~~-----~s~~~~l~~~~~~~piilV~NK~DLl~k~~~~~~~~~~l~~~~k~~g 124 (360)
T TIGR03597 50 DDDFLNLLNSLGDSNALIVYVVDIFDFE-----GSLIPELKRFVGGNPVLLVGNKIDLLPKSVNLSKIKEWMKKRAKELG 124 (360)
T ss_pred HHHHHHHHhhcccCCcEEEEEEECcCCC-----CCccHHHHHHhCCCCEEEEEEchhhCCCCCCHHHHHHHHHHHHHHcC
Confidence 4567777777888999999999987654 2234444444457899999999999754332 2222 3456667
Q ss_pred C---eEEEeccCCCCChHHHHHHHHHH
Q 030504 147 L---QYYEISAKSNYNFEKPFLYLARK 170 (176)
Q Consensus 147 ~---~~~~~S~~~~~~v~~~~~~l~~~ 170 (176)
+ .++.+||+++.|++++++.+.+.
T Consensus 125 ~~~~~i~~vSAk~g~gv~eL~~~l~~~ 151 (360)
T TIGR03597 125 LKPVDIILVSAKKGNGIDELLDKIKKA 151 (360)
T ss_pred CCcCcEEEecCCCCCCHHHHHHHHHHH
Confidence 6 48999999999999999998754
|
This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli. |
| >cd01900 YchF YchF subfamily | Back alignment and domain information |
|---|
Probab=99.00 E-value=1.4e-09 Score=76.07 Aligned_cols=81 Identities=16% Similarity=-0.040 Sum_probs=49.3
Q ss_pred EEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCc---------------EEEEEEEeCCCcccccc---
Q 030504 16 LVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG---------------KIRFYCWDTAGQEKFGG--- 77 (176)
Q Consensus 16 i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~D~~g~~~~~~--- 77 (176)
|+++|.|+||||||.|++.+........|....+.....+.+.+. ...+.++|+||.....+
T Consensus 1 igivG~PN~GKSTLfn~Lt~~~~~~~n~pftTi~p~~g~v~v~d~r~~~l~~~~~~~k~~~~~i~lvD~pGl~~~a~~~~ 80 (274)
T cd01900 1 IGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGIVPVPDERLDKLAEIVKPKKIVPATIEFVDIAGLVKGASKGE 80 (274)
T ss_pred CeEeCCCCCcHHHHHHHHhCCCCccccccccchhceeeeEEeccchhhhHHHHhCCceeeeeEEEEEECCCcCCCCchhh
Confidence 579999999999999997765542211122111222222333222 23589999999653221
Q ss_pred ----ccccccccccEEEEEEeCC
Q 030504 78 ----LRDGYYIHGQCAIIMFDVT 96 (176)
Q Consensus 78 ----~~~~~~~~~~~~i~v~d~~ 96 (176)
.....++++|++++|+|+.
T Consensus 81 glg~~fL~~i~~~D~li~VV~~f 103 (274)
T cd01900 81 GLGNKFLSHIREVDAIAHVVRCF 103 (274)
T ss_pred HHHHHHHHHHHhCCEEEEEEeCc
Confidence 1222357899999999874
|
YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor. |
| >KOG1143 consensus Predicted translation elongation factor [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.99 E-value=4.7e-09 Score=75.00 Aligned_cols=152 Identities=16% Similarity=0.193 Sum_probs=94.2
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHhcCCCCCc-----------------------cccceeEEEeEEEEEe----------c
Q 030504 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKK-----------------------YEPTIGVEVHPLDFFT----------N 58 (176)
Q Consensus 12 ~~~~i~i~G~~~~GKttl~~~~~~~~~~~~-----------------------~~~~~~~~~~~~~~~~----------~ 58 (176)
-++|++++|-..+|||||+--+..|..+.. -..+.|++.....+.+ +
T Consensus 166 ievRvAVlGg~D~GKSTLlGVLTQgeLDnG~GrARln~FRh~HEiqsGrTSsis~evlGFd~~g~vVNY~~~~taEEi~e 245 (591)
T KOG1143|consen 166 IEVRVAVLGGCDVGKSTLLGVLTQGELDNGNGRARLNIFRHPHEIQSGRTSSISNEVLGFDNRGKVVNYAQNMTAEEIVE 245 (591)
T ss_pred eEEEEEEecCcccCcceeeeeeecccccCCCCeeeeehhcchhhhccCcccccchhcccccccccccchhhcccHHHHHh
Confidence 478999999999999999876554432211 1112232222222211 1
Q ss_pred CcEEEEEEEeCCCccccccccccccc--cccEEEEEEeCCChhhhhhHHHHHHHHhhhcCCCCEEEEEeCCCCCcccc--
Q 030504 59 CGKIRFYCWDTAGQEKFGGLRDGYYI--HGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQV-- 134 (176)
Q Consensus 59 ~~~~~~~~~D~~g~~~~~~~~~~~~~--~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~~~~~-- 134 (176)
...--++++|.+|+.+|....-..+. ..|.+.+|++++....+..-+++ -.+... +.|++++.+|.|+.++.-
T Consensus 246 ~SSKlvTfiDLAGh~kY~~TTi~gLtgY~Ph~A~LvVsA~~Gi~~tTrEHL-gl~~AL--~iPfFvlvtK~Dl~~~~~~~ 322 (591)
T KOG1143|consen 246 KSSKLVTFIDLAGHAKYQKTTIHGLTGYTPHFACLVVSADRGITWTTREHL-GLIAAL--NIPFFVLVTKMDLVDRQGLK 322 (591)
T ss_pred hhcceEEEeecccchhhheeeeeecccCCCceEEEEEEcCCCCccccHHHH-HHHHHh--CCCeEEEEEeeccccchhHH
Confidence 12235789999999998775554443 36889999999877655444332 122222 999999999999987521
Q ss_pred ------------------------CHHHHHHHHH----cCCeEEEeccCCCCChHHHHHH
Q 030504 135 ------------------------KAKQVTFHRK----KNLQYYEISAKSNYNFEKPFLY 166 (176)
Q Consensus 135 ------------------------~~~~~~~~~~----~~~~~~~~S~~~~~~v~~~~~~ 166 (176)
..++...+++ .-.++|.+|+.+|+|++-+-..
T Consensus 323 ~tv~~l~nll~~~Gc~kvp~~Vt~~ddAv~Aaq~~~s~nivPif~vSsVsGegl~ll~~f 382 (591)
T KOG1143|consen 323 KTVKDLSNLLAKAGCTKVPKRVTTKDDAVKAAQELCSGNIVPIFAVSSVSGEGLRLLRTF 382 (591)
T ss_pred HHHHHHHHHHhhcCccccceEeechHHHHHHHHHhccCCceeEEEEeecCccchhHHHHH
Confidence 1122222222 2357999999999998765443
|
|
| >cd01858 NGP_1 NGP-1 | Back alignment and domain information |
|---|
Probab=98.97 E-value=2.7e-09 Score=69.08 Aligned_cols=56 Identities=18% Similarity=0.169 Sum_probs=39.4
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCC
Q 030504 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAG 71 (176)
Q Consensus 12 ~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g 71 (176)
..++|+++|.+|+|||||+|++.... .....++.|.+.....+..+. .+.++||||
T Consensus 101 ~~~~v~~~G~~nvGKStliN~l~~~~-~~~~~~~~g~T~~~~~~~~~~---~~~liDtPG 156 (157)
T cd01858 101 KQISVGFIGYPNVGKSSIINTLRSKK-VCKVAPIPGETKVWQYITLMK---RIYLIDCPG 156 (157)
T ss_pred cceEEEEEeCCCCChHHHHHHHhcCC-ceeeCCCCCeeEeEEEEEcCC---CEEEEECcC
Confidence 46789999999999999999976543 333355566665554444332 267999998
|
Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus. |
| >KOG0464 consensus Elongation factor G [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.97 E-value=1.1e-09 Score=79.23 Aligned_cols=133 Identities=20% Similarity=0.221 Sum_probs=103.8
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHhc--C------CCCCc--------cccceeEEEeEEEEEecCcEEEEEEEeCCCcccc
Q 030504 12 PSFKLVIVGDGGTGKTTFVKRHLT--G------EFEKK--------YEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKF 75 (176)
Q Consensus 12 ~~~~i~i~G~~~~GKttl~~~~~~--~------~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~ 75 (176)
...+|.++.+-.+||||...|++. | ..... .....|++.+...+.+++++..+.++||||+-.|
T Consensus 36 kirnigiiahidagktttterily~ag~~~s~g~vddgdtvtdfla~erergitiqsaav~fdwkg~rinlidtpghvdf 115 (753)
T KOG0464|consen 36 KIRNIGIIAHIDAGKTTTTERILYLAGAIHSAGDVDDGDTVTDFLAIERERGITIQSAAVNFDWKGHRINLIDTPGHVDF 115 (753)
T ss_pred hhhcceeEEEecCCCchhHHHHHHHhhhhhcccccCCCchHHHHHHHHHhcCceeeeeeeecccccceEeeecCCCcceE
Confidence 455799999999999999999763 2 11111 1223578999999999999999999999999999
Q ss_pred ccccccccccccEEEEEEeCCChhhhhhHHHHHHHHhhhcCCCCEEEEEeCCCCCccccCHHHHHHHHHcCC
Q 030504 76 GGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNL 147 (176)
Q Consensus 76 ~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~~~~~~~~~~~~~~~~~~ 147 (176)
+-....+++--|+++.|||.+..-.-+.+..|.+. .+. +.|..+++||.|....+........-++.+.
T Consensus 116 ~leverclrvldgavav~dasagve~qtltvwrqa-dk~--~ip~~~finkmdk~~anfe~avdsi~ekl~a 184 (753)
T KOG0464|consen 116 RLEVERCLRVLDGAVAVFDASAGVEAQTLTVWRQA-DKF--KIPAHCFINKMDKLAANFENAVDSIEEKLGA 184 (753)
T ss_pred EEEHHHHHHHhcCeEEEEeccCCcccceeeeehhc-ccc--CCchhhhhhhhhhhhhhhhhHHHHHHHHhCC
Confidence 99889999999999999999988777777777543 333 8899999999998876665555555555554
|
|
| >COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.96 E-value=9.6e-09 Score=71.40 Aligned_cols=101 Identities=12% Similarity=0.059 Sum_probs=63.5
Q ss_pred EEEEEEEeCCCccccccccccccccccEEEEEEeCCChhhhhhHHHHHHHHhhhcCCCCEEEEEeCCCCCccccCHHHH-
Q 030504 61 KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQV- 139 (176)
Q Consensus 61 ~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~~~~~~~~~~- 139 (176)
++.+.+++|.|--... -....-+|.+++|.-+.-....+.++.=+.. .-=++|+||.|..+........
T Consensus 143 G~DvIIVETVGvGQse---v~I~~~aDt~~~v~~pg~GD~~Q~iK~GimE-------iaDi~vINKaD~~~A~~a~r~l~ 212 (323)
T COG1703 143 GYDVIIVETVGVGQSE---VDIANMADTFLVVMIPGAGDDLQGIKAGIME-------IADIIVINKADRKGAEKAARELR 212 (323)
T ss_pred CCCEEEEEecCCCcch---hHHhhhcceEEEEecCCCCcHHHHHHhhhhh-------hhheeeEeccChhhHHHHHHHHH
Confidence 3557777777632211 1223457899998888777766666542222 2347889999976543322211
Q ss_pred ---HH----HHHcC--CeEEEeccCCCCChHHHHHHHHHHH
Q 030504 140 ---TF----HRKKN--LQYYEISAKSNYNFEKPFLYLARKL 171 (176)
Q Consensus 140 ---~~----~~~~~--~~~~~~S~~~~~~v~~~~~~l~~~i 171 (176)
.+ ....+ .+++.+||.+|+|++++++.+....
T Consensus 213 ~al~~~~~~~~~~~W~ppv~~t~A~~g~Gi~~L~~ai~~h~ 253 (323)
T COG1703 213 SALDLLREVWRENGWRPPVVTTSALEGEGIDELWDAIEDHR 253 (323)
T ss_pred HHHHhhcccccccCCCCceeEeeeccCCCHHHHHHHHHHHH
Confidence 11 22233 3799999999999999999887653
|
|
| >KOG2486 consensus Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.95 E-value=1.1e-09 Score=75.11 Aligned_cols=153 Identities=13% Similarity=0.120 Sum_probs=90.4
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHhcCCCCCcc-ccceeEEEeEEEEEecCcEEEEEEEeCCCc----------ccccccc
Q 030504 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKY-EPTIGVEVHPLDFFTNCGKIRFYCWDTAGQ----------EKFGGLR 79 (176)
Q Consensus 11 ~~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~----------~~~~~~~ 79 (176)
-...+++++|.+++|||+|++.++........ .++.|.+...-.+. ..-.+.+.|.||. +.+..+.
T Consensus 134 ~~~pe~~~~g~SNVGKSSLln~~~r~k~~~~t~k~K~g~Tq~in~f~---v~~~~~~vDlPG~~~a~y~~~~~~d~~~~t 210 (320)
T KOG2486|consen 134 DKRPELAFYGRSNVGKSSLLNDLVRVKNIADTSKSKNGKTQAINHFH---VGKSWYEVDLPGYGRAGYGFELPADWDKFT 210 (320)
T ss_pred CCCceeeeecCCcccHHHHHhhhhhhhhhhhhcCCCCccceeeeeee---ccceEEEEecCCcccccCCccCcchHhHhH
Confidence 34688999999999999999998765443222 22444333322222 2335788999992 1222333
Q ss_pred ccccccc---cEEEEEEeCCChhhhhhHH-HHHHHHhhhcCCCCEEEEEeCCCCCcccc------CHHHHH-------HH
Q 030504 80 DGYYIHG---QCAIIMFDVTARLTYKNVP-TWHRDLCRVCENIPIVLCGNKVDVKNRQV------KAKQVT-------FH 142 (176)
Q Consensus 80 ~~~~~~~---~~~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~p~liv~nK~Dl~~~~~------~~~~~~-------~~ 142 (176)
..|+.+- --+++++|++.+- +... ..+..+.+. +.|+.+|.||||...... ...... .+
T Consensus 211 ~~Y~leR~nLv~~FLLvd~sv~i--~~~D~~~i~~~ge~--~VP~t~vfTK~DK~k~~~~~~kKp~~~i~~~f~~l~~~~ 286 (320)
T KOG2486|consen 211 KSYLLERENLVRVFLLVDASVPI--QPTDNPEIAWLGEN--NVPMTSVFTKCDKQKKVKRTGKKPGLNIKINFQGLIRGV 286 (320)
T ss_pred HHHHHhhhhhheeeeeeeccCCC--CCCChHHHHHHhhc--CCCeEEeeehhhhhhhccccccCccccceeehhhccccc
Confidence 3344332 2445555655432 3232 233444554 999999999999754221 111111 12
Q ss_pred HHcCCeEEEeccCCCCChHHHHHHHHHH
Q 030504 143 RKKNLQYYEISAKSNYNFEKPFLYLARK 170 (176)
Q Consensus 143 ~~~~~~~~~~S~~~~~~v~~~~~~l~~~ 170 (176)
.....+.+.+|+.++.|.++++-.+.+-
T Consensus 287 f~~~~Pw~~~Ssvt~~Grd~Ll~~i~q~ 314 (320)
T KOG2486|consen 287 FLVDLPWIYVSSVTSLGRDLLLLHIAQL 314 (320)
T ss_pred eeccCCceeeecccccCceeeeeehhhh
Confidence 2234677889999999999988776653
|
|
| >cd04178 Nucleostemin_like Nucleostemin-like | Back alignment and domain information |
|---|
Probab=98.95 E-value=3e-09 Score=69.71 Aligned_cols=56 Identities=18% Similarity=0.209 Sum_probs=41.3
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCC
Q 030504 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAG 71 (176)
Q Consensus 12 ~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g 71 (176)
..++++++|.+|+|||||+|++..... ....+..|+|.....+..+. .+.++||||
T Consensus 116 ~~~~~~~vG~pnvGKSslin~l~~~~~-~~~~~~pg~T~~~~~~~~~~---~~~l~DtPG 171 (172)
T cd04178 116 TSITVGVVGFPNVGKSSLINSLKRSRA-CNVGATPGVTKSMQEVHLDK---KVKLLDSPG 171 (172)
T ss_pred cCcEEEEEcCCCCCHHHHHHHHhCccc-ceecCCCCeEcceEEEEeCC---CEEEEECcC
Confidence 458999999999999999999775443 23355567677655555432 478999998
|
Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the |
| >KOG0463 consensus GTP-binding protein GP-1 [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.95 E-value=1.8e-08 Score=72.17 Aligned_cols=157 Identities=15% Similarity=0.197 Sum_probs=93.3
Q ss_pred CCCCCeeEEEEEcCCCCcHHHHHHHHhcCCCCC-----------------------ccccceeEEEeEEEE---------
Q 030504 8 TVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEK-----------------------KYEPTIGVEVHPLDF--------- 55 (176)
Q Consensus 8 ~~~~~~~~i~i~G~~~~GKttl~~~~~~~~~~~-----------------------~~~~~~~~~~~~~~~--------- 55 (176)
..+--+++++++|...+|||||+--+.+|.... ......|++..--.+
T Consensus 128 ~~DF~E~RVAVVGNVDAGKSTLLGVLTHgeLDnGRG~ARqkLFRHKHEiESGRTSSVGNDILGFD~~GNvVNKPD~Hg~~ 207 (641)
T KOG0463|consen 128 EKDFIEARVAVVGNVDAGKSTLLGVLTHGELDNGRGAARQKLFRHKHEIESGRTSSVGNDILGFDVHGNVVNKPDPHGHN 207 (641)
T ss_pred CccceeEEEEEEecccCCcceeEeeeeecccccCccHHHHHHhhhhhhcccCccccccccceeeccccccccCCCCCCCc
Confidence 344568999999999999999987655543211 111111222111111
Q ss_pred -----EecCcEEEEEEEeCCCcccccccccccc--ccccEEEEEEeCCChhhhhhHHHHHHHHhhhcCCCCEEEEEeCCC
Q 030504 56 -----FTNCGKIRFYCWDTAGQEKFGGLRDGYY--IHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVD 128 (176)
Q Consensus 56 -----~~~~~~~~~~~~D~~g~~~~~~~~~~~~--~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~liv~nK~D 128 (176)
..++..-.++++|.+|+|+|-.....-. +-.|...+++-++..-- -.....+-.... -+.|+++|.||.|
T Consensus 208 LdWvkIce~saKviTFIDLAGHEkYLKTTvFGMTGH~PDf~MLMiGaNaGIi-GmTKEHLgLALa--L~VPVfvVVTKID 284 (641)
T KOG0463|consen 208 LDWVKICEDSAKVITFIDLAGHEKYLKTTVFGMTGHMPDFTMLMIGANAGII-GMTKEHLGLALA--LHVPVFVVVTKID 284 (641)
T ss_pred ccceeeccccceeEEEEeccchhhhhheeeeccccCCCCceEEEecccccce-eccHHhhhhhhh--hcCcEEEEEEeec
Confidence 1122333578899999998865433322 23566777776664321 111111111111 2899999999999
Q ss_pred CCccccCHHHHHHHHH------------------------------cCCeEEEeccCCCCChHHHHHHH
Q 030504 129 VKNRQVKAKQVTFHRK------------------------------KNLQYYEISAKSNYNFEKPFLYL 167 (176)
Q Consensus 129 l~~~~~~~~~~~~~~~------------------------------~~~~~~~~S~~~~~~v~~~~~~l 167 (176)
..+.++.++.+++..+ .-|++|.+|..+|+|++.+...|
T Consensus 285 MCPANiLqEtmKll~rllkS~gcrK~PvlVrs~DDVv~~A~NF~Ser~CPIFQvSNVtG~NL~LLkmFL 353 (641)
T KOG0463|consen 285 MCPANILQETMKLLTRLLKSPGCRKLPVLVRSMDDVVHAAVNFPSERVCPIFQVSNVTGTNLPLLKMFL 353 (641)
T ss_pred cCcHHHHHHHHHHHHHHhcCCCcccCcEEEecccceEEeeccCccccccceEEeccccCCChHHHHHHH
Confidence 9987776665433221 22678999999999988765544
|
|
| >KOG1486 consensus GTP-binding protein DRG2 (ODN superfamily) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.93 E-value=1.5e-07 Score=64.01 Aligned_cols=100 Identities=8% Similarity=0.014 Sum_probs=65.4
Q ss_pred CCCeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCcccccc-------ccccc
Q 030504 10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGG-------LRDGY 82 (176)
Q Consensus 10 ~~~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~-------~~~~~ 82 (176)
....-||+++|-|++|||||+..+. +...+. ....-++..++....+..+.++++.|.||.-...+ ..-+.
T Consensus 59 KsGdaRValIGfPSVGKStlLs~iT-~T~Sea-A~yeFTTLtcIpGvi~y~ga~IQllDLPGIieGAsqgkGRGRQviav 136 (364)
T KOG1486|consen 59 KSGDARVALIGFPSVGKSTLLSKIT-STHSEA-ASYEFTTLTCIPGVIHYNGANIQLLDLPGIIEGASQGKGRGRQVIAV 136 (364)
T ss_pred ccCCeEEEEecCCCccHHHHHHHhh-cchhhh-hceeeeEEEeecceEEecCceEEEecCcccccccccCCCCCceEEEE
Confidence 3467799999999999999999844 332222 22223455555555566777899999999543322 23345
Q ss_pred cccccEEEEEEeCCChhhhh-hHHHHHHHH
Q 030504 83 YIHGQCAIIMFDVTARLTYK-NVPTWHRDL 111 (176)
Q Consensus 83 ~~~~~~~i~v~d~~~~~s~~-~~~~~~~~~ 111 (176)
.+.+|.+++|.|++..+.-. .+.+.++.+
T Consensus 137 ArtaDlilMvLDatk~e~qr~~le~ELe~v 166 (364)
T KOG1486|consen 137 ARTADLILMVLDATKSEDQREILEKELEAV 166 (364)
T ss_pred eecccEEEEEecCCcchhHHHHHHHHHHHh
Confidence 67899999999999765332 334444444
|
|
| >cd01856 YlqF YlqF | Back alignment and domain information |
|---|
Probab=98.92 E-value=2.9e-09 Score=69.94 Aligned_cols=90 Identities=19% Similarity=0.146 Sum_probs=62.1
Q ss_pred cccccccccccEEEEEEeCCChhhhhhHHHHHHHHhhhcCCCCEEEEEeCCCCCccccCHHHHHHHHHcCCeEEEeccCC
Q 030504 77 GLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKS 156 (176)
Q Consensus 77 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~S~~~ 156 (176)
......+.++|.+++|+|++++....... +.....+.|.++|+||+|+.+........++.+..+..++.+|+++
T Consensus 11 ~~~~~~i~~aD~il~v~D~~~~~~~~~~~-----i~~~~~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~vi~iSa~~ 85 (171)
T cd01856 11 RQIKEKLKLVDLVIEVRDARIPLSSRNPL-----LEKILGNKPRIIVLNKADLADPKKTKKWLKYFESKGEKVLFVNAKS 85 (171)
T ss_pred HHHHHHHhhCCEEEEEeeccCccCcCChh-----hHhHhcCCCEEEEEehhhcCChHHHHHHHHHHHhcCCeEEEEECCC
Confidence 34456678999999999998765322211 1222236799999999999643222222233444456789999999
Q ss_pred CCChHHHHHHHHHHH
Q 030504 157 NYNFEKPFLYLARKL 171 (176)
Q Consensus 157 ~~~v~~~~~~l~~~i 171 (176)
+.|++++.+.+.+.+
T Consensus 86 ~~gi~~L~~~l~~~l 100 (171)
T cd01856 86 GKGVKKLLKAAKKLL 100 (171)
T ss_pred cccHHHHHHHHHHHH
Confidence 999999999988764
|
Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes. |
| >cd01849 YlqF_related_GTPase YlqF-related GTPases | Back alignment and domain information |
|---|
Probab=98.92 E-value=1.1e-08 Score=66.15 Aligned_cols=80 Identities=16% Similarity=0.148 Sum_probs=54.9
Q ss_pred cEEEEEEeCCChhhhhhHHHHHH--HHhhhcCCCCEEEEEeCCCCCccccCHHHH-HHHHHcCCeEEEeccCCCCChHHH
Q 030504 87 QCAIIMFDVTARLTYKNVPTWHR--DLCRVCENIPIVLCGNKVDVKNRQVKAKQV-TFHRKKNLQYYEISAKSNYNFEKP 163 (176)
Q Consensus 87 ~~~i~v~d~~~~~s~~~~~~~~~--~~~~~~~~~p~liv~nK~Dl~~~~~~~~~~-~~~~~~~~~~~~~S~~~~~~v~~~ 163 (176)
|++++|+|+.++.+.... ++. .+.. .++|+++|+||+|+.+.....+.. .+....+..++.+|++++.|++++
T Consensus 1 Dvvl~VvD~~~p~~~~~~--~i~~~~~~~--~~~p~IiVlNK~Dl~~~~~~~~~~~~~~~~~~~~ii~vSa~~~~gi~~L 76 (155)
T cd01849 1 DVILEVLDARDPLGTRSP--DIERVLIKE--KGKKLILVLNKADLVPKEVLRKWLAYLRHSYPTIPFKISATNGQGIEKK 76 (155)
T ss_pred CEEEEEEeccCCccccCH--HHHHHHHhc--CCCCEEEEEechhcCCHHHHHHHHHHHHhhCCceEEEEeccCCcChhhH
Confidence 689999999887644422 222 2222 479999999999996532222222 222233567899999999999999
Q ss_pred HHHHHHH
Q 030504 164 FLYLARK 170 (176)
Q Consensus 164 ~~~l~~~ 170 (176)
++.+.+.
T Consensus 77 ~~~i~~~ 83 (155)
T cd01849 77 ESAFTKQ 83 (155)
T ss_pred HHHHHHH
Confidence 9988764
|
These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases. |
| >cd01856 YlqF YlqF | Back alignment and domain information |
|---|
Probab=98.91 E-value=5.8e-09 Score=68.51 Aligned_cols=58 Identities=22% Similarity=0.212 Sum_probs=42.2
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCc
Q 030504 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQ 72 (176)
Q Consensus 11 ~~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~ 72 (176)
...++++++|.+++|||||+|++...... ...+..+.+........+ ..+.++||||.
T Consensus 113 ~~~~~~~~~G~~~vGKstlin~l~~~~~~-~~~~~~~~T~~~~~~~~~---~~~~~iDtpG~ 170 (171)
T cd01856 113 PRGIRAMVVGIPNVGKSTLINRLRGKKVA-KVGNKPGVTKGIQWIKIS---PGIYLLDTPGI 170 (171)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHhCCCce-eecCCCCEEeeeEEEEec---CCEEEEECCCC
Confidence 34579999999999999999998876553 334444556665555444 34789999994
|
Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes. |
| >cd01857 HSR1_MMR1 HSR1/MMR1 | Back alignment and domain information |
|---|
Probab=98.90 E-value=8.5e-09 Score=65.56 Aligned_cols=75 Identities=12% Similarity=0.184 Sum_probs=53.5
Q ss_pred ccccccEEEEEEeCCChhhhh--hHHHHHHHHhhhcCCCCEEEEEeCCCCCccccCHHHHHHHHHcCCeEEEeccCCCCC
Q 030504 82 YYIHGQCAIIMFDVTARLTYK--NVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYN 159 (176)
Q Consensus 82 ~~~~~~~~i~v~d~~~~~s~~--~~~~~~~~~~~~~~~~p~liv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~ 159 (176)
.+..+|++++|+|+.++.+.. .+..++... ..++|+++|+||+|+..+.........++..+..++.+||+++.+
T Consensus 8 ~i~~aD~vl~ViD~~~p~~~~~~~l~~~l~~~---~~~k~~iivlNK~DL~~~~~~~~~~~~~~~~~~~ii~iSa~~~~~ 84 (141)
T cd01857 8 VVERSDIVVQIVDARNPLLFRPPDLERYVKEV---DPRKKNILLLNKADLLTEEQRKAWAEYFKKEGIVVVFFSALKENA 84 (141)
T ss_pred HHhhCCEEEEEEEccCCcccCCHHHHHHHHhc---cCCCcEEEEEechhcCCHHHHHHHHHHHHhcCCeEEEEEecCCCc
Confidence 467899999999999876544 333333322 247899999999999654333344455666778899999998764
|
Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus. |
| >cd01858 NGP_1 NGP-1 | Back alignment and domain information |
|---|
Probab=98.88 E-value=1.9e-08 Score=65.11 Aligned_cols=87 Identities=15% Similarity=0.129 Sum_probs=57.7
Q ss_pred ccccccEEEEEEeCCChhh--hhhHHHHHHHHhhhcCCCCEEEEEeCCCCCccccCHHHHHHHHH-cCCeEEEeccCCCC
Q 030504 82 YYIHGQCAIIMFDVTARLT--YKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRK-KNLQYYEISAKSNY 158 (176)
Q Consensus 82 ~~~~~~~~i~v~d~~~~~s--~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~~~~~~~~~~~~~~~-~~~~~~~~S~~~~~ 158 (176)
.+..+|++++|+|++++.. ...+..++. ....+.|+++|+||+|+.++.........+.+ .....+.+|++.+.
T Consensus 5 ~l~~aD~il~VvD~~~p~~~~~~~i~~~l~---~~~~~~p~ilVlNKiDl~~~~~~~~~~~~~~~~~~~~~~~iSa~~~~ 81 (157)
T cd01858 5 VIDSSDVVIQVLDARDPMGTRCKHVEEYLK---KEKPHKHLIFVLNKCDLVPTWVTARWVKILSKEYPTIAFHASINNPF 81 (157)
T ss_pred hhhhCCEEEEEEECCCCccccCHHHHHHHH---hccCCCCEEEEEEchhcCCHHHHHHHHHHHhcCCcEEEEEeeccccc
Confidence 3578999999999998742 223333332 22236899999999999654322222222222 22335789999999
Q ss_pred ChHHHHHHHHHHH
Q 030504 159 NFEKPFLYLARKL 171 (176)
Q Consensus 159 ~v~~~~~~l~~~i 171 (176)
|++++++++.+..
T Consensus 82 ~~~~L~~~l~~~~ 94 (157)
T cd01858 82 GKGSLIQLLRQFS 94 (157)
T ss_pred cHHHHHHHHHHHH
Confidence 9999999987653
|
Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus. |
| >cd01859 MJ1464 MJ1464 | Back alignment and domain information |
|---|
Probab=98.86 E-value=1.2e-08 Score=66.06 Aligned_cols=56 Identities=20% Similarity=0.226 Sum_probs=40.4
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCC
Q 030504 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAG 71 (176)
Q Consensus 12 ~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g 71 (176)
...+++++|.+++|||||++++..+. ...+.++.|.+........+. .+.+|||||
T Consensus 100 ~~~~~~~ig~~~~Gkssl~~~l~~~~-~~~~~~~~~~t~~~~~~~~~~---~~~~~DtpG 155 (156)
T cd01859 100 KEGKVGVVGYPNVGKSSIINALKGRH-SASTSPSPGYTKGEQLVKITS---KIYLLDTPG 155 (156)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC-ccccCCCCCeeeeeEEEEcCC---CEEEEECcC
Confidence 45789999999999999999977443 444566777665443333322 588999998
|
This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus. |
| >TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF | Back alignment and domain information |
|---|
Probab=98.86 E-value=1.9e-08 Score=71.02 Aligned_cols=90 Identities=18% Similarity=0.184 Sum_probs=62.4
Q ss_pred ccccccccccEEEEEEeCCChhhhhhHHHHHHHHhhhcCCCCEEEEEeCCCCCccccCHHHHHHHHHcCCeEEEeccCCC
Q 030504 78 LRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSN 157 (176)
Q Consensus 78 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~S~~~~ 157 (176)
.....+..+|++++|+|+.++.+.... .+... ..++|+++|+||+|+.+........+..+..+..++.+|++++
T Consensus 14 ~~~~~l~~aDvVl~V~Dar~p~~~~~~--~i~~~---l~~kp~IiVlNK~DL~~~~~~~~~~~~~~~~~~~vi~iSa~~~ 88 (276)
T TIGR03596 14 EIKEKLKLVDVVIEVLDARIPLSSRNP--MIDEI---RGNKPRLIVLNKADLADPAVTKQWLKYFEEKGIKALAINAKKG 88 (276)
T ss_pred HHHHHHhhCCEEEEEEeCCCCCCCCCh--hHHHH---HCCCCEEEEEEccccCCHHHHHHHHHHHHHcCCeEEEEECCCc
Confidence 345567889999999999876543321 11111 1378999999999996432222222334445678899999999
Q ss_pred CChHHHHHHHHHHHh
Q 030504 158 YNFEKPFLYLARKLA 172 (176)
Q Consensus 158 ~~v~~~~~~l~~~i~ 172 (176)
.|++++.+.+.+.+.
T Consensus 89 ~gi~~L~~~i~~~~~ 103 (276)
T TIGR03596 89 KGVKKIIKAAKKLLK 103 (276)
T ss_pred ccHHHHHHHHHHHHH
Confidence 999999988877654
|
Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members. |
| >cd01855 YqeH YqeH | Back alignment and domain information |
|---|
Probab=98.84 E-value=7.7e-09 Score=69.09 Aligned_cols=57 Identities=19% Similarity=0.240 Sum_probs=41.1
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCCCC-------CccccceeEEEeEEEEEecCcEEEEEEEeCCCc
Q 030504 13 SFKLVIVGDGGTGKTTFVKRHLTGEFE-------KKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQ 72 (176)
Q Consensus 13 ~~~i~i~G~~~~GKttl~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~ 72 (176)
..+++++|.+|+|||||+|.++..... ....+..|+|.....+..+. .+.++||||.
T Consensus 127 ~~~~~~~G~~nvGKStliN~l~~~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~---~~~~~DtPG~ 190 (190)
T cd01855 127 GGDVYVVGATNVGKSTLINALLKKDNGKKKLKDLLTTSPIPGTTLDLIKIPLGN---GKKLYDTPGI 190 (190)
T ss_pred CCcEEEEcCCCCCHHHHHHHHHHhcccccccccccccCCCCCeeeeeEEEecCC---CCEEEeCcCC
Confidence 358999999999999999998764321 12334456777776666643 4689999993
|
YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. |
| >PF09547 Spore_IV_A: Stage IV sporulation protein A (spore_IV_A); InterPro: IPR014201 This entry is designated stage IV sporulation protein A | Back alignment and domain information |
|---|
Probab=98.84 E-value=4.9e-07 Score=66.06 Aligned_cols=154 Identities=14% Similarity=0.150 Sum_probs=90.2
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHhcCCCCC--------------ccccceeEEEe----------EEEEEe-cCcEEEEEE
Q 030504 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEK--------------KYEPTIGVEVH----------PLDFFT-NCGKIRFYC 66 (176)
Q Consensus 12 ~~~~i~i~G~~~~GKttl~~~~~~~~~~~--------------~~~~~~~~~~~----------~~~~~~-~~~~~~~~~ 66 (176)
..+-|.++|+..+|||||+.||..--..+ =..+..|-+.. -..+.+ ++-.+++++
T Consensus 16 GdIYiGVVGPVRTGKSTFIKRFMel~VlPnI~d~~~reRa~DELPQS~aGktImTTEPKFiP~eAv~I~l~~~~~~kVRL 95 (492)
T PF09547_consen 16 GDIYIGVVGPVRTGKSTFIKRFMELLVLPNIEDEYERERARDELPQSGAGKTIMTTEPKFIPNEAVEITLDDGIKVKVRL 95 (492)
T ss_pred CceEEEeecCcccCchhHHHHHHHHhcCCCCCCHHHHHHhhhcCCcCCCCCceeccCCcccCCcceEEEecCCceEEEEE
Confidence 46789999999999999999987621100 01111111111 112223 456788999
Q ss_pred EeCCCc--------c-----cc-cccccc---------------cccc--ccEEEEEEeCC----ChhhhhhHH-HHHHH
Q 030504 67 WDTAGQ--------E-----KF-GGLRDG---------------YYIH--GQCAIIMFDVT----ARLTYKNVP-TWHRD 110 (176)
Q Consensus 67 ~D~~g~--------~-----~~-~~~~~~---------------~~~~--~~~~i~v~d~~----~~~s~~~~~-~~~~~ 110 (176)
.|+.|. + ++ ..-|.. .+.. .-++++--|-+ .++.+..+. ..+..
T Consensus 96 iDCVGy~V~gA~Gy~e~~~pRmV~TPWfd~eIPF~eAAeiGT~KVI~dHSTIGiVVTTDGSi~dipRe~Y~eAEervI~E 175 (492)
T PF09547_consen 96 IDCVGYMVEGALGYEEEEGPRMVKTPWFDEEIPFEEAAEIGTRKVITDHSTIGIVVTTDGSITDIPRENYVEAEERVIEE 175 (492)
T ss_pred EeecceeecCccccccCCCceeecCCCCCCCCCHHHHHhhcccceeccCCceeEEEecCCCccCCChHHHHHHHHHHHHH
Confidence 998771 1 10 111111 1111 23444444433 234444443 34555
Q ss_pred HhhhcCCCCEEEEEeCCCCCccccCHHHHHHHHHcCCeEEEeccCCC--CChHHHHHHH
Q 030504 111 LCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSN--YNFEKPFLYL 167 (176)
Q Consensus 111 ~~~~~~~~p~liv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~S~~~~--~~v~~~~~~l 167 (176)
+.+. ++|+++++|-.+........-..++..+++.+++.+++..- +.+..+++.+
T Consensus 176 Lk~i--gKPFvillNs~~P~s~et~~L~~eL~ekY~vpVlpvnc~~l~~~DI~~Il~~v 232 (492)
T PF09547_consen 176 LKEI--GKPFVILLNSTKPYSEETQELAEELEEKYDVPVLPVNCEQLREEDITRILEEV 232 (492)
T ss_pred HHHh--CCCEEEEEeCCCCCCHHHHHHHHHHHHHhCCcEEEeehHHcCHHHHHHHHHHH
Confidence 5555 99999999999887777777777888999999999887643 3444444443
|
It acts in the mother cell compartment and plays a role in spore coat morphogenesis []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species. |
| >COG1161 Predicted GTPases [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.83 E-value=1.1e-08 Score=73.50 Aligned_cols=60 Identities=23% Similarity=0.221 Sum_probs=46.8
Q ss_pred CCCeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCcc
Q 030504 10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73 (176)
Q Consensus 10 ~~~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~ 73 (176)
.+..+++.++|.|+||||||+|++.+... ....+..|+|.....+..+.. +.++||||.-
T Consensus 129 ~~~~~~v~vvG~PNVGKSslIN~L~~k~~-~~~s~~PG~Tk~~q~i~~~~~---i~LlDtPGii 188 (322)
T COG1161 129 LKRKIRVGVVGYPNVGKSTLINRLLGKKV-AKTSNRPGTTKGIQWIKLDDG---IYLLDTPGII 188 (322)
T ss_pred CccceEEEEEcCCCCcHHHHHHHHhcccc-eeeCCCCceecceEEEEcCCC---eEEecCCCcC
Confidence 34568899999999999999999665443 445666688888888877654 7899999953
|
|
| >KOG0099 consensus G protein subunit Galphas, small G protein superfamily [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.83 E-value=1.7e-08 Score=68.89 Aligned_cols=113 Identities=14% Similarity=0.142 Sum_probs=77.4
Q ss_pred cEEEEEEEeCCCccccccccccccccccEEEEEEeCCChh----------hhhhHHHHHHHHhhh--cCCCCEEEEEeCC
Q 030504 60 GKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARL----------TYKNVPTWHRDLCRV--CENIPIVLCGNKV 127 (176)
Q Consensus 60 ~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~----------s~~~~~~~~~~~~~~--~~~~p~liv~nK~ 127 (176)
..++|..+|.+|+..-+..|-+++...-++|+|+..+.-. .+++...++..+... .....+++++||.
T Consensus 200 dkv~FhMfDVGGQRDeRrKWIQcFndvtAiifv~acSsyn~vlrED~~qNRL~EaL~LFksiWnNRwL~tisvIlFLNKq 279 (379)
T KOG0099|consen 200 DKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVACSSYNMVLREDNQQNRLQEALNLFKSIWNNRWLRTISVILFLNKQ 279 (379)
T ss_pred cccceeeeccCCchhhhhhHHHHhcCccEEEEEEeccchhhhhhcCCchhHHHHHHHHHHHHHhhhHHhhhheeEEecHH
Confidence 5567999999999999999999999999999999987421 223334444444332 2578899999999
Q ss_pred CCCcccc-----------------------------CHHH-H-------HHHH--------HcCCeEEEeccCCCCChHH
Q 030504 128 DVKNRQV-----------------------------KAKQ-V-------TFHR--------KKNLQYYEISAKSNYNFEK 162 (176)
Q Consensus 128 Dl~~~~~-----------------------------~~~~-~-------~~~~--------~~~~~~~~~S~~~~~~v~~ 162 (176)
|+..+.+ .... . ++.+ ++.|.+..+.|.+-+++..
T Consensus 280 DllaeKi~Agk~~i~dyFpEf~~y~~p~da~~es~~d~~v~raK~fird~FlRiSta~~Dg~h~CYpHFTcAvDTenIrr 359 (379)
T KOG0099|consen 280 DLLAEKILAGKSKIEDYFPEFARYTTPEDATPESGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHFTCAVDTENIRR 359 (379)
T ss_pred HHHHHHHHcchhhHHHhChHHhccCCccccCCCCCCChhhHHHHHhhhhhHhhhccccCCCceecccceeEeechHHHHH
Confidence 9653210 0000 0 1111 0225577889999999999
Q ss_pred HHHHHHHHHh
Q 030504 163 PFLYLARKLA 172 (176)
Q Consensus 163 ~~~~l~~~i~ 172 (176)
+|+.....|.
T Consensus 360 VFnDcrdiIq 369 (379)
T KOG0099|consen 360 VFNDCRDIIQ 369 (379)
T ss_pred HHHHHHHHHH
Confidence 9998766654
|
|
| >PRK09563 rbgA GTPase YlqF; Reviewed | Back alignment and domain information |
|---|
Probab=98.81 E-value=2.5e-08 Score=70.79 Aligned_cols=59 Identities=20% Similarity=0.160 Sum_probs=43.0
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCcc
Q 030504 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73 (176)
Q Consensus 11 ~~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~ 73 (176)
...++++++|.+|+|||||+|++...... ...+..|.|.....+..+. .+.++||||..
T Consensus 119 ~~~~~~~~~G~pnvGKSsliN~l~~~~~~-~~~~~~g~T~~~~~~~~~~---~~~l~DtPGi~ 177 (287)
T PRK09563 119 PRAIRAMIIGIPNVGKSTLINRLAGKKIA-KTGNRPGVTKAQQWIKLGK---GLELLDTPGIL 177 (287)
T ss_pred cCceEEEEECCCCCCHHHHHHHHhcCCcc-ccCCCCCeEEEEEEEEeCC---cEEEEECCCcC
Confidence 45689999999999999999997654432 2345566666665555442 36799999974
|
|
| >TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF | Back alignment and domain information |
|---|
Probab=98.81 E-value=1.7e-08 Score=71.27 Aligned_cols=58 Identities=22% Similarity=0.182 Sum_probs=42.2
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCc
Q 030504 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQ 72 (176)
Q Consensus 11 ~~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~ 72 (176)
.+.++++++|.+|+|||||+|++....... .....|+|.....+.... .+.++||||.
T Consensus 116 ~~~~~~~~vG~~nvGKSslin~l~~~~~~~-~~~~~g~T~~~~~~~~~~---~~~l~DtPG~ 173 (276)
T TIGR03596 116 NRPIRAMIVGIPNVGKSTLINRLAGKKVAK-VGNRPGVTKGQQWIKLSD---GLELLDTPGI 173 (276)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHhCCCccc-cCCCCCeecceEEEEeCC---CEEEEECCCc
Confidence 356899999999999999999977544322 244556666665555532 4689999997
|
Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members. |
| >PRK09563 rbgA GTPase YlqF; Reviewed | Back alignment and domain information |
|---|
Probab=98.79 E-value=4.4e-08 Score=69.53 Aligned_cols=99 Identities=18% Similarity=0.170 Sum_probs=66.4
Q ss_pred CCCccc-cccccccccccccEEEEEEeCCChhhhhhHHHHHHHHhhhcCCCCEEEEEeCCCCCccccCHHHHHHHHHcCC
Q 030504 69 TAGQEK-FGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNL 147 (176)
Q Consensus 69 ~~g~~~-~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~~~~~~~~~~~~~~~~~~ 147 (176)
.|||.. ........+.++|++++|+|+.++.+.... ++... ..++|+++|+||+|+.+........+..++.+.
T Consensus 7 fpgHm~k~~~~l~~~l~~aDvIL~VvDar~p~~~~~~--~l~~~---~~~kp~iiVlNK~DL~~~~~~~~~~~~~~~~~~ 81 (287)
T PRK09563 7 FPGHMAKARREIKENLKLVDVVIEVLDARIPLSSENP--MIDKI---IGNKPRLLILNKSDLADPEVTKKWIEYFEEQGI 81 (287)
T ss_pred cHHHHHHHHHHHHHHhhhCCEEEEEEECCCCCCCCCh--hHHHH---hCCCCEEEEEEchhcCCHHHHHHHHHHHHHcCC
Confidence 456532 223345567889999999999877543321 11222 137899999999999643222223344445567
Q ss_pred eEEEeccCCCCChHHHHHHHHHHHh
Q 030504 148 QYYEISAKSNYNFEKPFLYLARKLA 172 (176)
Q Consensus 148 ~~~~~S~~~~~~v~~~~~~l~~~i~ 172 (176)
.++.+|++++.|++++.+.+...+.
T Consensus 82 ~vi~vSa~~~~gi~~L~~~l~~~l~ 106 (287)
T PRK09563 82 KALAINAKKGQGVKKILKAAKKLLK 106 (287)
T ss_pred eEEEEECCCcccHHHHHHHHHHHHH
Confidence 8899999999999999998877654
|
|
| >KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.78 E-value=4.3e-08 Score=70.05 Aligned_cols=115 Identities=21% Similarity=0.151 Sum_probs=72.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCc---cccceeEEEeEEEEEecCcE------------------------------
Q 030504 15 KLVIVGDGGTGKTTFVKRHLTGEFEKK---YEPTIGVEVHPLDFFTNCGK------------------------------ 61 (176)
Q Consensus 15 ~i~i~G~~~~GKttl~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~------------------------------ 61 (176)
=|+++|.-+.|||||++.++.+.++.. ..|| +++.......+..+
T Consensus 60 mill~GqyStGKTtfi~yLle~dypg~riGpEPT--td~Fi~vM~G~~e~~ipGnal~vd~~~pF~gL~~FG~aflnRf~ 137 (532)
T KOG1954|consen 60 MILLVGQYSTGKTTFIRYLLEQDYPGLRIGPEPT--TDRFIAVMHGDEEGSIPGNALVVDAKKPFRGLNKFGNAFLNRFM 137 (532)
T ss_pred eEEEEeccccchhHHHHHHHhCCCCccccCCCCC--cceeEEEEecCcccccCCceeeecCCCchhhhhhhHHHHHHHHH
Confidence 489999999999999999888776521 2222 22332222211111
Q ss_pred ---------EEEEEEeCCCcccccc-----------ccccccccccEEEEEEeCCChhhhhhHHHHHHHHhhhcCCCCEE
Q 030504 62 ---------IRFYCWDTAGQEKFGG-----------LRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIV 121 (176)
Q Consensus 62 ---------~~~~~~D~~g~~~~~~-----------~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~l 121 (176)
-.+.++||||.-..+. ...=+..++|.+|++||+..-+--.+....+..+... .-.+-
T Consensus 138 csqmp~~vLe~vtiVdtPGILsgeKQrisR~ydF~~v~~WFaeR~D~IiLlfD~hKLDIsdEf~~vi~aLkG~--EdkiR 215 (532)
T KOG1954|consen 138 CSQLPNQVLESVTIVDTPGILSGEKQRISRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFKRVIDALKGH--EDKIR 215 (532)
T ss_pred HhcCChhhhhheeeeccCcccccchhcccccCChHHHHHHHHHhccEEEEEechhhccccHHHHHHHHHhhCC--cceeE
Confidence 1388999999432222 1222466899999999987654334444445555444 56688
Q ss_pred EEEeCCCCCccc
Q 030504 122 LCGNKVDVKNRQ 133 (176)
Q Consensus 122 iv~nK~Dl~~~~ 133 (176)
+|+||.|..+.+
T Consensus 216 VVLNKADqVdtq 227 (532)
T KOG1954|consen 216 VVLNKADQVDTQ 227 (532)
T ss_pred EEeccccccCHH
Confidence 889999987643
|
|
| >COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.78 E-value=8.7e-07 Score=56.41 Aligned_cols=148 Identities=18% Similarity=0.154 Sum_probs=77.3
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCC-Cccc--------------c
Q 030504 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTA-GQEK--------------F 75 (176)
Q Consensus 11 ~~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~-g~~~--------------~ 75 (176)
...+||.+.|+|||||||++.++.. ......-... .+.+.++...++..-|.+.|+. |.+. |
T Consensus 3 ~~~mki~ITG~PGvGKtTl~~ki~e-~L~~~g~kvg--Gf~t~EVR~gGkR~GF~Ivdl~tg~~~~la~~~~~~~rvGkY 79 (179)
T COG1618 3 KMAMKIFITGRPGVGKTTLVLKIAE-KLREKGYKVG--GFITPEVREGGKRIGFKIVDLATGEEGILARVGFSRPRVGKY 79 (179)
T ss_pred CcceEEEEeCCCCccHHHHHHHHHH-HHHhcCceee--eEEeeeeecCCeEeeeEEEEccCCceEEEEEcCCCCcccceE
Confidence 4578999999999999999998542 2222111111 2334445556677778888876 3111 0
Q ss_pred cc-----------ccccccccccEEEEEEeCCChhhhhhHHHHHHHHhhhc-CCCCEEEEEeCCCCCccccCHHHHHHHH
Q 030504 76 GG-----------LRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNRQVKAKQVTFHR 143 (176)
Q Consensus 76 ~~-----------~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~liv~nK~Dl~~~~~~~~~~~~~~ 143 (176)
.. ..+..++.+|++| +|---+-. ....++...+.+.. .+.|++.++.+.+.. -.....+
T Consensus 80 ~V~v~~le~i~~~al~rA~~~aDvII--IDEIGpME-lks~~f~~~ve~vl~~~kpliatlHrrsr~------P~v~~ik 150 (179)
T COG1618 80 GVNVEGLEEIAIPALRRALEEADVII--IDEIGPME-LKSKKFREAVEEVLKSGKPLIATLHRRSRH------PLVQRIK 150 (179)
T ss_pred EeeHHHHHHHhHHHHHHHhhcCCEEE--Eecccchh-hccHHHHHHHHHHhcCCCcEEEEEecccCC------hHHHHhh
Confidence 00 0111123345544 44332221 12223333333332 388888777766441 1223334
Q ss_pred HcCCeEEEeccCCCCChHHHHHHHHHHHhc
Q 030504 144 KKNLQYYEISAKSNYNFEKPFLYLARKLAG 173 (176)
Q Consensus 144 ~~~~~~~~~S~~~~~~v~~~~~~l~~~i~~ 173 (176)
..+.-+.. .+.+|=+.+++.+.+.+..
T Consensus 151 ~~~~v~v~---lt~~NR~~i~~~Il~~L~~ 177 (179)
T COG1618 151 KLGGVYVF---LTPENRNRILNEILSVLKG 177 (179)
T ss_pred hcCCEEEE---EccchhhHHHHHHHHHhcc
Confidence 44444443 4555555888888777654
|
|
| >COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.75 E-value=1.5e-07 Score=70.94 Aligned_cols=137 Identities=13% Similarity=0.225 Sum_probs=83.0
Q ss_pred CCCCeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccccccccccE
Q 030504 9 VDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQC 88 (176)
Q Consensus 9 ~~~~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~ 88 (176)
..++++=++++|+||+|||||++.+.............| .++ -+.++...+++++.|. ....+ -...+-+|.
T Consensus 65 d~PPPfIvavvGPpGtGKsTLirSlVrr~tk~ti~~i~G----PiT-vvsgK~RRiTflEcp~--Dl~~m-iDvaKIaDL 136 (1077)
T COG5192 65 DLPPPFIVAVVGPPGTGKSTLIRSLVRRFTKQTIDEIRG----PIT-VVSGKTRRITFLECPS--DLHQM-IDVAKIADL 136 (1077)
T ss_pred cCCCCeEEEeecCCCCChhHHHHHHHHHHHHhhhhccCC----ceE-EeecceeEEEEEeChH--HHHHH-HhHHHhhhe
Confidence 446788899999999999999998664332211111111 111 1345777889998873 22222 223456899
Q ss_pred EEEEEeCCChhhhhhHHHHHHHHhhhcCCCC-EEEEEeCCCCCccccCHHHH------HHHH--HcCCeEEEeccCC
Q 030504 89 AIIMFDVTARLTYKNVPTWHRDLCRVCENIP-IVLCGNKVDVKNRQVKAKQV------TFHR--KKNLQYYEISAKS 156 (176)
Q Consensus 89 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p-~liv~nK~Dl~~~~~~~~~~------~~~~--~~~~~~~~~S~~~ 156 (176)
+++++|.+-.-..+.+. ++..+... +.| ++-|+|..|+......-... .++. ..|+.+|..|-..
T Consensus 137 VlLlIdgnfGfEMETmE-FLnil~~H--GmPrvlgV~ThlDlfk~~stLr~~KKrlkhRfWtEiyqGaKlFylsgV~ 210 (1077)
T COG5192 137 VLLLIDGNFGFEMETME-FLNILISH--GMPRVLGVVTHLDLFKNPSTLRSIKKRLKHRFWTEIYQGAKLFYLSGVE 210 (1077)
T ss_pred eEEEeccccCceehHHH-HHHHHhhc--CCCceEEEEeecccccChHHHHHHHHHHhhhHHHHHcCCceEEEecccc
Confidence 99999998765444443 33333333 444 78899999997644322211 1122 2478899988763
|
|
| >KOG0459 consensus Polypeptide release factor 3 [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.75 E-value=2.9e-08 Score=71.52 Aligned_cols=157 Identities=20% Similarity=0.206 Sum_probs=99.2
Q ss_pred CCCCCeeEEEEEcCCCCcHHHHHHHHhc--CCCC----Ccc-----------------------ccceeEEEeEEEEEec
Q 030504 8 TVDYPSFKLVIVGDGGTGKTTFVKRHLT--GEFE----KKY-----------------------EPTIGVEVHPLDFFTN 58 (176)
Q Consensus 8 ~~~~~~~~i~i~G~~~~GKttl~~~~~~--~~~~----~~~-----------------------~~~~~~~~~~~~~~~~ 58 (176)
..+..+++++++|+..+||||+-.+++. |... +.| ...-|-+.......++
T Consensus 74 ~~pk~hvn~vfighVdagkstigg~il~ltg~Vd~Rt~ekyereake~~rEswylsW~ldtn~EeR~kgKtvEvGrA~FE 153 (501)
T KOG0459|consen 74 EYPKEHVNAVFIGHVDAGKSTIGGNILFLTGMVDKRTLEKYEREAKEKNRESWYLSWALDTNGEERDKGKTVEVGRAYFE 153 (501)
T ss_pred CCCCCCceEEEEEEEeccccccCCeeEEEEeeecHHHHHHHHHHHHhhccccceEEEEEcCchhhhhccceeeeeeEEEE
Confidence 3456889999999999999999877543 1100 000 0011223333344444
Q ss_pred CcEEEEEEEeCCCccccccccccccccccEEEEEEeCCChh---hhhhHHH--HHHHHhhhcCCCCEEEEEeCCCCCccc
Q 030504 59 CGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARL---TYKNVPT--WHRDLCRVCENIPIVLCGNKVDVKNRQ 133 (176)
Q Consensus 59 ~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~---s~~~~~~--~~~~~~~~~~~~p~liv~nK~Dl~~~~ 133 (176)
.....|++.|.|||..|-...-.-..++|..++|+++...+ .|+.--+ ...++.....-...++++||.|-+..+
T Consensus 154 te~~~ftiLDApGHk~fv~nmI~GasqAD~~vLvisar~gefetgFerGgQTREha~Lakt~gv~~lVv~vNKMddPtvn 233 (501)
T KOG0459|consen 154 TENKRFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGVKHLIVLINKMDDPTVN 233 (501)
T ss_pred ecceeEEeeccCcccccchhhccccchhhhhhhhhhhhhchhhcccccccchhHHHHHHHhhccceEEEEEEeccCCccC
Confidence 45567999999999998877777778999999999986432 2222111 112223333355678889999976522
Q ss_pred --------cCHHHHHHHHHcC------CeEEEeccCCCCChHHHH
Q 030504 134 --------VKAKQVTFHRKKN------LQYYEISAKSNYNFEKPF 164 (176)
Q Consensus 134 --------~~~~~~~~~~~~~------~~~~~~S~~~~~~v~~~~ 164 (176)
...+...+.+..| ..++++|..+|.++.+..
T Consensus 234 Ws~eRy~E~~~k~~~fLr~~g~n~~~d~~f~p~sg~tG~~~k~~~ 278 (501)
T KOG0459|consen 234 WSNERYEECKEKLQPFLRKLGFNPKPDKHFVPVSGLTGANVKDRT 278 (501)
T ss_pred cchhhHHHHHHHHHHHHHHhcccCCCCceeeecccccccchhhcc
Confidence 2223345555433 469999999999987754
|
|
| >KOG0467 consensus Translation elongation factor 2/ribosome biogenesis protein RIA1 and related proteins [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.72 E-value=8.7e-08 Score=73.95 Aligned_cols=115 Identities=17% Similarity=0.162 Sum_probs=83.1
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHhcCCCC--------------CccccceeEEEeEEEEEecCcEEEEEEEeCCCccccc
Q 030504 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFE--------------KKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFG 76 (176)
Q Consensus 11 ~~~~~i~i~G~~~~GKttl~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~ 76 (176)
....+++++-+...|||||+..++..+-. -+-..+.|++-....+..-.+.+.+.++|.|||-.|.
T Consensus 7 ~~irn~~~vahvdhgktsladsl~asngvis~rlagkirfld~redeq~rgitmkss~is~~~~~~~~nlidspghvdf~ 86 (887)
T KOG0467|consen 7 EGIRNICLVAHVDHGKTSLADSLVASNGVISSRLAGKIRFLDTREDEQTRGITMKSSAISLLHKDYLINLIDSPGHVDFS 86 (887)
T ss_pred CceeEEEEEEEecCCccchHHHHHhhccEechhhccceeeccccchhhhhceeeeccccccccCceEEEEecCCCccchh
Confidence 35568999999999999999987653210 0112245666666555555678889999999999999
Q ss_pred cccccccccccEEEEEEeCCChhhhhhHHHHHHHHhhhcCCCCEEEEEeCCC
Q 030504 77 GLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVD 128 (176)
Q Consensus 77 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~liv~nK~D 128 (176)
+......+-+|++++++|+..+-.-+.... +++... .+...++|+||.|
T Consensus 87 sevssas~l~d~alvlvdvvegv~~qt~~v-lrq~~~--~~~~~~lvinkid 135 (887)
T KOG0467|consen 87 SEVSSASRLSDGALVLVDVVEGVCSQTYAV-LRQAWI--EGLKPILVINKID 135 (887)
T ss_pred hhhhhhhhhcCCcEEEEeeccccchhHHHH-HHHHHH--ccCceEEEEehhh
Confidence 999999999999999999987643333221 222221 3677788899999
|
|
| >cd01849 YlqF_related_GTPase YlqF-related GTPases | Back alignment and domain information |
|---|
Probab=98.67 E-value=8.5e-08 Score=61.97 Aligned_cols=58 Identities=17% Similarity=0.164 Sum_probs=38.6
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCc
Q 030504 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQ 72 (176)
Q Consensus 11 ~~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~ 72 (176)
....+++++|.+|+|||||+|.+....... .....+++........+ ..+.++||||.
T Consensus 98 ~~~~~~~~~G~~~~GKstlin~l~~~~~~~-~~~~~~~t~~~~~~~~~---~~~~liDtPG~ 155 (155)
T cd01849 98 KKSITVGVIGYPNVGKSSVINALLNKLKLK-VGNVPGTTTSQQEVKLD---NKIKLLDTPGI 155 (155)
T ss_pred ccCcEEEEEccCCCCHHHHHHHHHcccccc-ccCCCCcccceEEEEec---CCEEEEECCCC
Confidence 356889999999999999999977544211 22233444444444333 24789999983
|
These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases. |
| >KOG1491 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.67 E-value=1.4e-07 Score=66.73 Aligned_cols=88 Identities=17% Similarity=0.052 Sum_probs=60.1
Q ss_pred CCCCeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecC---------------cEEEEEEEeCCCcc
Q 030504 9 VDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNC---------------GKIRFYCWDTAGQE 73 (176)
Q Consensus 9 ~~~~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~D~~g~~ 73 (176)
.+.+++++.|+|.|++|||||.|.+.........-|...++-....+.+.. ....++++|++|.-
T Consensus 16 R~~~~lkiGIVGlPNvGKST~fnalT~~~a~~~NfPF~TIdPn~a~V~v~d~Rfd~l~~~Y~~~~~vpa~l~v~DIAGLv 95 (391)
T KOG1491|consen 16 RDGNNLKIGIVGLPNVGKSTFFNALTKSKAGAANFPFCTIDPNEARVEVPDSRFDLLCPIYGPKSKVPAFLTVYDIAGLV 95 (391)
T ss_pred CCCCcceeeEeeCCCCchHHHHHHHhcCCCCccCCCcceeccccceeecCchHHHHHHHhcCCcceeeeeEEEEeecccc
Confidence 345788999999999999999999887776655445444444443333222 23578999999864
Q ss_pred cccc-------ccccccccccEEEEEEeCC
Q 030504 74 KFGG-------LRDGYYIHGQCAIIMFDVT 96 (176)
Q Consensus 74 ~~~~-------~~~~~~~~~~~~i~v~d~~ 96 (176)
+..+ -....++.+|+++-|+++.
T Consensus 96 kGAs~G~GLGN~FLs~iR~vDaifhVVr~f 125 (391)
T KOG1491|consen 96 KGASAGEGLGNKFLSHIRHVDAIFHVVRAF 125 (391)
T ss_pred cCcccCcCchHHHHHhhhhccceeEEEEec
Confidence 4322 2333467889999998865
|
|
| >KOG0085 consensus G protein subunit Galphaq/Galphay, small G protein superfamily [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.67 E-value=2.2e-08 Score=67.25 Aligned_cols=117 Identities=16% Similarity=0.125 Sum_probs=76.2
Q ss_pred ecCcEEEEEEEeCCCccccccccccccccccEEEEEEeCCCh----------hhhhhHHHHHHHHhhh--cCCCCEEEEE
Q 030504 57 TNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTAR----------LTYKNVPTWHRDLCRV--CENIPIVLCG 124 (176)
Q Consensus 57 ~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~----------~s~~~~~~~~~~~~~~--~~~~p~liv~ 124 (176)
++...+.|.+.|.+|+..-+..|-+++.+.-.+++++..+.- ...++...++..+... +.+.++++++
T Consensus 194 fdl~~iifrmvDvGGqrserrKWIHCFEnvtsi~fLvaLSEYDQvL~E~dnENRMeESkALFrTIi~yPWF~nssVIlFL 273 (359)
T KOG0085|consen 194 FDLQKIIFRMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFL 273 (359)
T ss_pred cchhhheeeeeecCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHhccccccCCceEEEe
Confidence 344556788999999988888899998888777777666532 1223333344444332 4799999999
Q ss_pred eCCCCCcccc---------------C---HHHHHHH----HHcC------CeEEEeccCCCCChHHHHHHHHHHHhc
Q 030504 125 NKVDVKNRQV---------------K---AKQVTFH----RKKN------LQYYEISAKSNYNFEKPFLYLARKLAG 173 (176)
Q Consensus 125 nK~Dl~~~~~---------------~---~~~~~~~----~~~~------~~~~~~S~~~~~~v~~~~~~l~~~i~~ 173 (176)
||.|+..+.. . +.+.++. ...+ +.-..+.|.+-+|+.-+|..+...+.+
T Consensus 274 NKkDlLEekI~ySHl~~YFPe~~GP~qDa~AAreFILkm~~d~nPd~dKii~SHfTcATDT~NIRfVFaaVkDtiLq 350 (359)
T KOG0085|consen 274 NKKDLLEEKILYSHLADYFPEFDGPKQDAQAAREFILKMYVDMNPDSDKIIYSHFTCATDTENIRFVFAAVKDTILQ 350 (359)
T ss_pred chhhhhhhhhhHHHHHHhCcccCCCcccHHHHHHHHHHHHHhhCCCccceeeeeeeecccchhHHHHHHHHHHHHHH
Confidence 9999765321 1 1122222 2222 223567888899999999988777654
|
|
| >PRK01889 GTPase RsgA; Reviewed | Back alignment and domain information |
|---|
Probab=98.63 E-value=3.3e-07 Score=66.93 Aligned_cols=82 Identities=9% Similarity=0.089 Sum_probs=58.7
Q ss_pred cccccEEEEEEeCCChhhhhhHHHHHHHHhhhcCCCCEEEEEeCCCCCccccCHHHHHHHH--HcCCeEEEeccCCCCCh
Q 030504 83 YIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHR--KKNLQYYEISAKSNYNF 160 (176)
Q Consensus 83 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~~~~~~~~~~~~~~--~~~~~~~~~S~~~~~~v 160 (176)
..++|.+++|+++..+.....+..++...... +.|.++|+||+||.+... +..+... ..+.+++.+|++++.|+
T Consensus 110 aANvD~vliV~s~~p~~~~~~ldr~L~~a~~~--~i~piIVLNK~DL~~~~~--~~~~~~~~~~~g~~Vi~vSa~~g~gl 185 (356)
T PRK01889 110 AANVDTVFIVCSLNHDFNLRRIERYLALAWES--GAEPVIVLTKADLCEDAE--EKIAEVEALAPGVPVLAVSALDGEGL 185 (356)
T ss_pred EEeCCEEEEEEecCCCCChhHHHHHHHHHHHc--CCCEEEEEEChhcCCCHH--HHHHHHHHhCCCCcEEEEECCCCccH
Confidence 57889999999997444444555555555554 778899999999975421 1111112 45789999999999999
Q ss_pred HHHHHHHH
Q 030504 161 EKPFLYLA 168 (176)
Q Consensus 161 ~~~~~~l~ 168 (176)
+++..++.
T Consensus 186 ~~L~~~L~ 193 (356)
T PRK01889 186 DVLAAWLS 193 (356)
T ss_pred HHHHHHhh
Confidence 99988874
|
|
| >PRK10416 signal recognition particle-docking protein FtsY; Provisional | Back alignment and domain information |
|---|
Probab=98.61 E-value=1.2e-06 Score=62.95 Aligned_cols=96 Identities=10% Similarity=0.009 Sum_probs=58.4
Q ss_pred cEEEEEEEeCCCccccccc--------cc----cccccccEEEEEEeCCChhhhhhHHHHHHHHhhhcCCCCEEEEEeCC
Q 030504 60 GKIRFYCWDTAGQEKFGGL--------RD----GYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKV 127 (176)
Q Consensus 60 ~~~~~~~~D~~g~~~~~~~--------~~----~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~liv~nK~ 127 (176)
..+.+.++||||....... .+ ..-...+..++|.|++... +.+.+ .....+. -.+.-+|+||.
T Consensus 195 ~~~D~ViIDTaGr~~~~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g~--~~~~~-a~~f~~~--~~~~giIlTKl 269 (318)
T PRK10416 195 RGIDVLIIDTAGRLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDATTGQ--NALSQ-AKAFHEA--VGLTGIILTKL 269 (318)
T ss_pred CCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCh--HHHHH-HHHHHhh--CCCCEEEEECC
Confidence 3467899999996432211 10 1112467889999998643 22221 1222221 23457788999
Q ss_pred CCCccccCHHHHHHHHHcCCeEEEeccCCCCChHHHH
Q 030504 128 DVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPF 164 (176)
Q Consensus 128 Dl~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~ 164 (176)
|-... .-.....+...++|+..++ +|++++++-
T Consensus 270 D~t~~--~G~~l~~~~~~~~Pi~~v~--~Gq~~~Dl~ 302 (318)
T PRK10416 270 DGTAK--GGVVFAIADELGIPIKFIG--VGEGIDDLQ 302 (318)
T ss_pred CCCCC--ccHHHHHHHHHCCCEEEEe--CCCChhhCc
Confidence 95432 3355677778899999987 888887754
|
|
| >PRK13796 GTPase YqeH; Provisional | Back alignment and domain information |
|---|
Probab=98.60 E-value=4.5e-07 Score=66.51 Aligned_cols=80 Identities=23% Similarity=0.295 Sum_probs=56.6
Q ss_pred ccEEEEEEeCCChhhhhhHHHHHHHHhhhcCCCCEEEEEeCCCCCccccCH-HHH----HHHHHcCC---eEEEeccCCC
Q 030504 86 GQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKA-KQV----TFHRKKNL---QYYEISAKSN 157 (176)
Q Consensus 86 ~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~~~~~~~-~~~----~~~~~~~~---~~~~~S~~~~ 157 (176)
.+.+++|+|+.+.. ..|...+.+...+.|+++|+||+|+.+..... ... .+++..++ .++.+||+++
T Consensus 70 ~~lIv~VVD~~D~~-----~s~~~~L~~~~~~kpviLViNK~DLl~~~~~~~~i~~~l~~~~k~~g~~~~~v~~vSAk~g 144 (365)
T PRK13796 70 DALVVNVVDIFDFN-----GSWIPGLHRFVGNNPVLLVGNKADLLPKSVKKNKVKNWLRQEAKELGLRPVDVVLISAQKG 144 (365)
T ss_pred CcEEEEEEECccCC-----CchhHHHHHHhCCCCEEEEEEchhhCCCccCHHHHHHHHHHHHHhcCCCcCcEEEEECCCC
Confidence 34999999998743 22344444444578999999999997543322 222 33455565 5899999999
Q ss_pred CChHHHHHHHHHH
Q 030504 158 YNFEKPFLYLARK 170 (176)
Q Consensus 158 ~~v~~~~~~l~~~ 170 (176)
.|++++++.+.+.
T Consensus 145 ~gI~eL~~~I~~~ 157 (365)
T PRK13796 145 HGIDELLEAIEKY 157 (365)
T ss_pred CCHHHHHHHHHHh
Confidence 9999999999765
|
|
| >PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis | Back alignment and domain information |
|---|
Probab=98.60 E-value=5.7e-08 Score=62.46 Aligned_cols=59 Identities=27% Similarity=0.333 Sum_probs=32.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCC------ccccceeEEEeEEEEEecCcEEEEEEEeCCCcccc
Q 030504 14 FKLVIVGDGGTGKTTFVKRHLTGEFEK------KYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKF 75 (176)
Q Consensus 14 ~~i~i~G~~~~GKttl~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~ 75 (176)
-.++++|++|||||||+|.++...... .......++.....+..+... .+.||||...+
T Consensus 36 k~~vl~G~SGvGKSSLiN~L~~~~~~~t~~is~~~~rGkHTTt~~~l~~l~~g~---~iIDTPGf~~~ 100 (161)
T PF03193_consen 36 KTSVLLGQSGVGKSSLINALLPEAKQKTGEISEKTGRGKHTTTHRELFPLPDGG---YIIDTPGFRSF 100 (161)
T ss_dssp SEEEEECSTTSSHHHHHHHHHTSS----S--------------SEEEEEETTSE---EEECSHHHHT-
T ss_pred CEEEEECCCCCCHHHHHHHHHhhcchhhhhhhcccCCCcccCCCeeEEecCCCc---EEEECCCCCcc
Confidence 468999999999999999977642211 111112233334444443333 57899996543
|
RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B. |
| >KOG4273 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.60 E-value=1.2e-06 Score=59.74 Aligned_cols=115 Identities=16% Similarity=0.135 Sum_probs=64.8
Q ss_pred EEEEEcCCCC--cHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccccccccccEEEEE
Q 030504 15 KLVIVGDGGT--GKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIM 92 (176)
Q Consensus 15 ~i~i~G~~~~--GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 92 (176)
.++++|-+|+ ||.+|+.++..-.+.....+.-.+.+..+++........+.+.-.+-...+.-..........++++|
T Consensus 6 ~~lv~g~sgvfsg~~~ll~rl~s~dfed~ses~~~te~hgwtid~kyysadi~lcishicde~~lpn~~~a~pl~a~vmv 85 (418)
T KOG4273|consen 6 CALVTGCSGVFSGDQLLLHRLGSEDFEDESESNDATEFHGWTIDNKYYSADINLCISHICDEKFLPNAEIAEPLQAFVMV 85 (418)
T ss_pred eEEEecccccccchHHHHHHhcchhheeeccccCceeeeceEecceeeecceeEEeecccchhccCCcccccceeeEEEE
Confidence 5789999998 99999999776655443333323333333332111111222222121122211122223445789999
Q ss_pred EeCCChhhhhhHHHHHHHHhhhcCCCC-EEEEEeCCCCCc
Q 030504 93 FDVTARLTYKNVPTWHRDLCRVCENIP-IVLCGNKVDVKN 131 (176)
Q Consensus 93 ~d~~~~~s~~~~~~~~~~~~~~~~~~p-~liv~nK~Dl~~ 131 (176)
||.+....+..+..|+....-. ... .+.++||.|..+
T Consensus 86 fdlse~s~l~alqdwl~htdin--sfdillcignkvdrvp 123 (418)
T KOG4273|consen 86 FDLSEKSGLDALQDWLPHTDIN--SFDILLCIGNKVDRVP 123 (418)
T ss_pred EeccchhhhHHHHhhccccccc--cchhheeccccccccc
Confidence 9999998888888887543221 222 466789998654
|
|
| >PRK12288 GTPase RsgA; Reviewed | Back alignment and domain information |
|---|
Probab=98.57 E-value=2e-07 Score=67.68 Aligned_cols=58 Identities=19% Similarity=0.234 Sum_probs=35.4
Q ss_pred EEEEcCCCCcHHHHHHHHhcCCCCCc--c----ccceeEEEeEEEEEecCcEEEEEEEeCCCccccc
Q 030504 16 LVIVGDGGTGKTTFVKRHLTGEFEKK--Y----EPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFG 76 (176)
Q Consensus 16 i~i~G~~~~GKttl~~~~~~~~~~~~--~----~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~ 76 (176)
++|+|.+|||||||+|+++....... . .....+|.....+...... .++||||...+.
T Consensus 208 ~~~vG~sgVGKSTLiN~Ll~~~~~~t~~is~~~~rGrHTT~~~~l~~l~~~~---~liDTPGir~~~ 271 (347)
T PRK12288 208 SIFVGQSGVGKSSLINALLPEAEILVGDVSDNSGLGQHTTTAARLYHFPHGG---DLIDSPGVREFG 271 (347)
T ss_pred EEEECCCCCCHHHHHHHhccccceeeccccCcCCCCcCceeeEEEEEecCCC---EEEECCCCCccc
Confidence 78999999999999999775432211 0 1111233344444443332 489999977543
|
|
| >KOG0466 consensus Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.57 E-value=6.4e-08 Score=67.58 Aligned_cols=109 Identities=14% Similarity=0.124 Sum_probs=72.8
Q ss_pred EEEEEeCCCccccccccccccccccEEEEEEeCCChh-hhhhHHHHHHHHhhhcCCCCEEEEEeCCCCCccccCHH----
Q 030504 63 RFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARL-TYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAK---- 137 (176)
Q Consensus 63 ~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~~~~~~~~---- 137 (176)
.+.+.|.|||+-..+....-..-.|++++++..+.+. .-+..+++. .+.-. .=+.++++-||.||..+....+
T Consensus 126 HVSfVDCPGHDiLMaTMLnGaAvmDaalLlIA~NEsCPQPQTsEHLa-aveiM-~LkhiiilQNKiDli~e~~A~eq~e~ 203 (466)
T KOG0466|consen 126 HVSFVDCPGHDILMATMLNGAAVMDAALLLIAGNESCPQPQTSEHLA-AVEIM-KLKHIIILQNKIDLIKESQALEQHEQ 203 (466)
T ss_pred EEEeccCCchHHHHHHHhcchHHhhhhhhhhhcCCCCCCCchhhHHH-HHHHh-hhceEEEEechhhhhhHHHHHHHHHH
Confidence 5778899999876655554444558888888877532 233333321 11111 1346888899999987554332
Q ss_pred HHHHHHH---cCCeEEEeccCCCCChHHHHHHHHHHHhc
Q 030504 138 QVTFHRK---KNLQYYEISAKSNYNFEKPFLYLARKLAG 173 (176)
Q Consensus 138 ~~~~~~~---~~~~~~~~S~~~~~~v~~~~~~l~~~i~~ 173 (176)
...+.+. .+.+++.+||....|++-+.++++++|..
T Consensus 204 I~kFi~~t~ae~aPiiPisAQlkyNId~v~eyivkkIPv 242 (466)
T KOG0466|consen 204 IQKFIQGTVAEGAPIIPISAQLKYNIDVVCEYIVKKIPV 242 (466)
T ss_pred HHHHHhccccCCCceeeehhhhccChHHHHHHHHhcCCC
Confidence 2344333 36799999999999999999999998764
|
|
| >TIGR00092 GTP-binding protein YchF | Back alignment and domain information |
|---|
Probab=98.57 E-value=2.5e-07 Score=67.11 Aligned_cols=82 Identities=15% Similarity=-0.128 Sum_probs=52.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCC-CC-ccccceeEEEeEEEEEecC---------------cEEEEEEEeCCCccccc
Q 030504 14 FKLVIVGDGGTGKTTFVKRHLTGEF-EK-KYEPTIGVEVHPLDFFTNC---------------GKIRFYCWDTAGQEKFG 76 (176)
Q Consensus 14 ~~i~i~G~~~~GKttl~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~D~~g~~~~~ 76 (176)
+++.|+|.|++|||||.+.+..... .. +|..+ ..+.....+.+.+ ....+.+.|+||.....
T Consensus 3 lk~GivGlPn~GKSTlfnaLT~~~~~~~a~ypft-Ti~p~~g~v~v~d~r~d~L~~~~~~~~~~~a~i~~~DiaGlv~gA 81 (368)
T TIGR00092 3 LSGGIVGLPNVGKSTLFAATTNLLGNEAANPPFT-TIEPNAGVVNPSDPRLDLLAIYIKPEKVPPTTTEFVDIAGLVGGA 81 (368)
T ss_pred ceEEEECCCCCChHHHHHHHhCCCccccCCCCCC-CCCCceeEEEechhHHHHHHHHhCCcCcCCceEEEEeccccccch
Confidence 7899999999999999999766554 22 22211 1122222222222 12467889999965422
Q ss_pred -------cccccccccccEEEEEEeCC
Q 030504 77 -------GLRDGYYIHGQCAIIMFDVT 96 (176)
Q Consensus 77 -------~~~~~~~~~~~~~i~v~d~~ 96 (176)
......++.+|+++.|++..
T Consensus 82 s~g~Glgn~fL~~ir~~d~l~hVvr~f 108 (368)
T TIGR00092 82 SKGEGLGNQFLANIREVDIIQHVVRCF 108 (368)
T ss_pred hcccCcchHHHHHHHhCCEEEEEEeCC
Confidence 23344578899999999985
|
This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor. |
| >PRK13796 GTPase YqeH; Provisional | Back alignment and domain information |
|---|
Probab=98.55 E-value=1.5e-07 Score=68.93 Aligned_cols=58 Identities=19% Similarity=0.263 Sum_probs=41.3
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCCC----CCccccceeEEEeEEEEEecCcEEEEEEEeCCCcc
Q 030504 13 SFKLVIVGDGGTGKTTFVKRHLTGEF----EKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73 (176)
Q Consensus 13 ~~~i~i~G~~~~GKttl~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~ 73 (176)
..++.++|.+|||||||+|+++.... ....++..|+|.....+..++. ..++||||..
T Consensus 160 ~~~v~vvG~~NvGKSTLiN~L~~~~~~~~~~~~~s~~pGTT~~~~~~~l~~~---~~l~DTPGi~ 221 (365)
T PRK13796 160 GRDVYVVGVTNVGKSTLINRIIKEITGEKDVITTSRFPGTTLDKIEIPLDDG---SFLYDTPGII 221 (365)
T ss_pred CCeEEEEcCCCCcHHHHHHHHHhhccCccceEEecCCCCccceeEEEEcCCC---cEEEECCCcc
Confidence 34799999999999999999875321 1123455677777776666433 3689999963
|
|
| >PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1) | Back alignment and domain information |
|---|
Probab=98.54 E-value=4.2e-07 Score=47.46 Aligned_cols=45 Identities=13% Similarity=0.318 Sum_probs=32.8
Q ss_pred ccccEEEEEEeCCCh--hhhhhHHHHHHHHhhhcCCCCEEEEEeCCC
Q 030504 84 IHGQCAIIMFDVTAR--LTYKNVPTWHRDLCRVCENIPIVLCGNKVD 128 (176)
Q Consensus 84 ~~~~~~i~v~d~~~~--~s~~~~~~~~~~~~~~~~~~p~liv~nK~D 128 (176)
.-.++++|++|++.. .+.+....++..+...++++|+++|.||+|
T Consensus 12 hL~~~ilfi~D~Se~CGysie~Q~~L~~~ik~~F~~~P~i~V~nK~D 58 (58)
T PF06858_consen 12 HLADAILFIIDPSEQCGYSIEEQLSLFKEIKPLFPNKPVIVVLNKID 58 (58)
T ss_dssp GT-SEEEEEE-TT-TTSS-HHHHHHHHHHHHHHTTTS-EEEEE--TT
T ss_pred hhcceEEEEEcCCCCCCCCHHHHHHHHHHHHHHcCCCCEEEEEeccC
Confidence 346899999999964 466777788899999999999999999998
|
The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A. |
| >KOG0465 consensus Mitochondrial elongation factor [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.52 E-value=3.3e-07 Score=69.31 Aligned_cols=120 Identities=21% Similarity=0.266 Sum_probs=88.7
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHhc--CCCC------C--------ccccceeEEEeEEEEEecCcEEEEEEEeCCCcccc
Q 030504 12 PSFKLVIVGDGGTGKTTFVKRHLT--GEFE------K--------KYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKF 75 (176)
Q Consensus 12 ~~~~i~i~G~~~~GKttl~~~~~~--~~~~------~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~ 75 (176)
...+|.+.-+=.+||||+.++.+. |+.. . ......|++.+..-.+..++.+++.++|||||-.|
T Consensus 38 k~RNIgi~AhidsgKTT~tEr~Lyy~G~~~~i~ev~~~~a~md~m~~er~rgITiqSAAt~~~w~~~~iNiIDTPGHvDF 117 (721)
T KOG0465|consen 38 KIRNIGISAHIDAGKTTLTERMLYYTGRIKHIGEVRGGGATMDSMELERQRGITIQSAATYFTWRDYRINIIDTPGHVDF 117 (721)
T ss_pred hhcccceEEEEecCCceeeheeeeecceeeeccccccCceeeehHHHHHhcCceeeeceeeeeeccceeEEecCCCceeE
Confidence 345677777888999999999664 2110 0 01112356666666667777899999999999999
Q ss_pred ccccccccccccEEEEEEeCCChhhhhhHHHHHHHHhhhcCCCCEEEEEeCCCCCcccc
Q 030504 76 GGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQV 134 (176)
Q Consensus 76 ~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~~~~~ 134 (176)
.......++--|++++|++...+-.-+....|.+ +.+. +.|.+.++||.|.-....
T Consensus 118 T~EVeRALrVlDGaVlvl~aV~GVqsQt~tV~rQ-~~ry--~vP~i~FiNKmDRmGa~~ 173 (721)
T KOG0465|consen 118 TFEVERALRVLDGAVLVLDAVAGVESQTETVWRQ-MKRY--NVPRICFINKMDRMGASP 173 (721)
T ss_pred EEEehhhhhhccCeEEEEEcccceehhhHHHHHH-HHhc--CCCeEEEEehhhhcCCCh
Confidence 8888888889999999999987765555555643 3444 999999999999876554
|
|
| >TIGR03348 VI_IcmF type VI secretion protein IcmF | Back alignment and domain information |
|---|
Probab=98.52 E-value=3e-07 Score=76.45 Aligned_cols=111 Identities=18% Similarity=0.206 Sum_probs=64.1
Q ss_pred EEEEcCCCCcHHHHHHHHhcCCCCCcc----cc--ceeEEEeEEEEEecCcEEEEEEEeCCCcc--------cccccccc
Q 030504 16 LVIVGDGGTGKTTFVKRHLTGEFEKKY----EP--TIGVEVHPLDFFTNCGKIRFYCWDTAGQE--------KFGGLRDG 81 (176)
Q Consensus 16 i~i~G~~~~GKttl~~~~~~~~~~~~~----~~--~~~~~~~~~~~~~~~~~~~~~~~D~~g~~--------~~~~~~~~ 81 (176)
.+|+|++|+||||++++ .+-.++-.. .. ..+-+..+- ..+.+ .-.++||+|.- .....|..
T Consensus 114 YlviG~~gsGKtt~l~~-sgl~~pl~~~~~~~~~~~~~~t~~c~-wwf~~---~avliDtaG~y~~~~~~~~~~~~~W~~ 188 (1169)
T TIGR03348 114 YLVIGPPGSGKTTLLQN-SGLKFPLAERLGAAALRGVGGTRNCD-WWFTD---EAVLIDTAGRYTTQDSDPEEDAAAWLG 188 (1169)
T ss_pred EEEECCCCCchhHHHHh-CCCCCcCchhhccccccCCCCCcccc-eEecC---CEEEEcCCCccccCCCcccccHHHHHH
Confidence 68999999999999997 444442210 11 111122111 11222 23488999932 12234555
Q ss_pred ccc---------cccEEEEEEeCCChhh--h-------hhHHHHHHHHhhhc-CCCCEEEEEeCCCCCc
Q 030504 82 YYI---------HGQCAIIMFDVTARLT--Y-------KNVPTWHRDLCRVC-ENIPIVLCGNKVDVKN 131 (176)
Q Consensus 82 ~~~---------~~~~~i~v~d~~~~~s--~-------~~~~~~~~~~~~~~-~~~p~liv~nK~Dl~~ 131 (176)
++. ..+++|+++|+.+--. - ..+...+..+.+.. -..|+.++.||+|+..
T Consensus 189 fL~~L~k~R~r~plnGvil~vs~~~Ll~~~~~~~~~~a~~lR~rl~el~~~lg~~~PVYvv~Tk~Dll~ 257 (1169)
T TIGR03348 189 FLGLLRKHRRRQPLNGVVVTVSLADLLTADPAERKAHARAIRQRLQELREQLGARFPVYLVLTKADLLA 257 (1169)
T ss_pred HHHHHHHhCCCCCCCeEEEEEEHHHHhCCCHHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEecchhhc
Confidence 432 3799999999885321 1 12223334444333 4899999999999864
|
Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems. |
| >cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain | Back alignment and domain information |
|---|
Probab=98.51 E-value=1.3e-06 Score=59.93 Aligned_cols=87 Identities=16% Similarity=0.112 Sum_probs=51.7
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHhcC--CCCCc---cccceeEEEeEEEEEecCcEEEEEEEeCCCccccccc------c
Q 030504 11 YPSFKLVIVGDGGTGKTTFVKRHLTG--EFEKK---YEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGL------R 79 (176)
Q Consensus 11 ~~~~~i~i~G~~~~GKttl~~~~~~~--~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~------~ 79 (176)
.+-.-|.|+|++++|||+|+|+++.. .+... ...|.|+-........ +....+.++||+|....... .
T Consensus 5 ~~v~vvsv~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~gi~~~~~~~~~-~~~~~v~~lDteG~~~~~~~~~~~~~~ 83 (224)
T cd01851 5 FPVAVVSVFGPQSSGKSFLLNHLFGTLSGFDVMDTSQQTTKGIWMWSVPFKL-GKEHAVLLLDTEGTDGRERGEFEDDAR 83 (224)
T ss_pred CCEEEEEEECCCCCCHHHHHHHHhCCCCCeEecCCCCCCccceEEEeccccC-CCcceEEEEecCCcCccccCchhhhhH
Confidence 35567999999999999999998877 44322 1122232222111111 23467899999996543221 1
Q ss_pred cccccc--ccEEEEEEeCCCh
Q 030504 80 DGYYIH--GQCAIIMFDVTAR 98 (176)
Q Consensus 80 ~~~~~~--~~~~i~v~d~~~~ 98 (176)
...+.. ++.+||..+....
T Consensus 84 ~~~l~~llss~~i~n~~~~~~ 104 (224)
T cd01851 84 LFALATLLSSVLIYNSWETIL 104 (224)
T ss_pred HHHHHHHHhCEEEEeccCccc
Confidence 122223 7888887777643
|
Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein |
| >TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH | Back alignment and domain information |
|---|
Probab=98.51 E-value=3.5e-07 Score=66.95 Aligned_cols=58 Identities=19% Similarity=0.285 Sum_probs=40.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCC----CCccccceeEEEeEEEEEecCcEEEEEEEeCCCccc
Q 030504 14 FKLVIVGDGGTGKTTFVKRHLTGEF----EKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK 74 (176)
Q Consensus 14 ~~i~i~G~~~~GKttl~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~ 74 (176)
.++.++|.+|||||||+|+++.... ....++..|+|.....+..+.. +.++||||...
T Consensus 155 ~~v~~vG~~nvGKStliN~l~~~~~~~~~~~~~s~~pgtT~~~~~~~~~~~---~~l~DtPG~~~ 216 (360)
T TIGR03597 155 KDVYVVGVTNVGKSSLINKLLKQNNGDKDVITTSPFPGTTLDLIEIPLDDG---HSLYDTPGIIN 216 (360)
T ss_pred CeEEEECCCCCCHHHHHHHHHhhccCCcceeeecCCCCeEeeEEEEEeCCC---CEEEECCCCCC
Confidence 4899999999999999999876332 1233445566666665555322 46999999653
|
This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli. |
| >PRK12289 GTPase RsgA; Reviewed | Back alignment and domain information |
|---|
Probab=98.51 E-value=2.7e-07 Score=67.05 Aligned_cols=56 Identities=23% Similarity=0.274 Sum_probs=35.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCcccccee-------EEEeEEEEEecCcEEEEEEEeCCCccc
Q 030504 15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIG-------VEVHPLDFFTNCGKIRFYCWDTAGQEK 74 (176)
Q Consensus 15 ~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~D~~g~~~ 74 (176)
-++|+|++|||||||+|+++...... .....+ +|.....+...... .++||||...
T Consensus 174 i~v~iG~SgVGKSSLIN~L~~~~~~~-t~~vs~~~~rGrHTT~~~~l~~l~~g~---~liDTPG~~~ 236 (352)
T PRK12289 174 ITVVAGPSGVGKSSLINRLIPDVELR-VGKVSGKLGRGRHTTRHVELFELPNGG---LLADTPGFNQ 236 (352)
T ss_pred eEEEEeCCCCCHHHHHHHHcCccccc-cccccCCCCCCCCcCceeEEEECCCCc---EEEeCCCccc
Confidence 38999999999999999977543221 111112 44444444444333 5899999654
|
|
| >TIGR00064 ftsY signal recognition particle-docking protein FtsY | Back alignment and domain information |
|---|
Probab=98.50 E-value=1.1e-06 Score=61.87 Aligned_cols=98 Identities=11% Similarity=-0.033 Sum_probs=59.4
Q ss_pred cEEEEEEEeCCCccccccccc------------cccccccEEEEEEeCCChhhhhhHHHHHHHHhhhcCCCCEEEEEeCC
Q 030504 60 GKIRFYCWDTAGQEKFGGLRD------------GYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKV 127 (176)
Q Consensus 60 ~~~~~~~~D~~g~~~~~~~~~------------~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~liv~nK~ 127 (176)
..+.+.++||+|......... ..-...|..++|+|++... +.+ .....+.+. -.+.-+|.||.
T Consensus 153 ~~~D~ViIDT~G~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~~~--~~~-~~~~~f~~~--~~~~g~IlTKl 227 (272)
T TIGR00064 153 RNIDVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTGQ--NAL-EQAKVFNEA--VGLTGIILTKL 227 (272)
T ss_pred CCCCEEEEeCCCCCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCCH--HHH-HHHHHHHhh--CCCCEEEEEcc
Confidence 346789999999654322111 1112479999999997542 222 222233322 12457778999
Q ss_pred CCCccccCHHHHHHHHHcCCeEEEeccCCCCChHHHHHH
Q 030504 128 DVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLY 166 (176)
Q Consensus 128 Dl~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~ 166 (176)
|..... ..........+.|+..++ +|++++++..+
T Consensus 228 De~~~~--G~~l~~~~~~~~Pi~~~~--~Gq~~~dl~~~ 262 (272)
T TIGR00064 228 DGTAKG--GIILSIAYELKLPIKFIG--VGEKIDDLAPF 262 (272)
T ss_pred CCCCCc--cHHHHHHHHHCcCEEEEe--CCCChHhCccC
Confidence 985443 244556667788888887 78888776443
|
There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein. |
| >PRK14974 cell division protein FtsY; Provisional | Back alignment and domain information |
|---|
Probab=98.48 E-value=1.7e-07 Score=67.58 Aligned_cols=96 Identities=15% Similarity=0.052 Sum_probs=57.6
Q ss_pred EEEEEEEeCCCcccccc-ccc---cc--cccccEEEEEEeCCChhhhhhHHHHHHHHhhhcCCCCEEEEEeCCCCCcccc
Q 030504 61 KIRFYCWDTAGQEKFGG-LRD---GY--YIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQV 134 (176)
Q Consensus 61 ~~~~~~~D~~g~~~~~~-~~~---~~--~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~~~~~ 134 (176)
++.+.++||+|...... ... .. ..+.|..++|.|+.... ........+.+. -..--+|+||.|.....
T Consensus 222 ~~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~g~---d~~~~a~~f~~~--~~~~giIlTKlD~~~~~- 295 (336)
T PRK14974 222 GIDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALAGN---DAVEQAREFNEA--VGIDGVILTKVDADAKG- 295 (336)
T ss_pred CCCEEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEeeccccch---hHHHHHHHHHhc--CCCCEEEEeeecCCCCc-
Confidence 35689999999653221 111 11 12568889999987643 222222222221 22346678999986433
Q ss_pred CHHHHHHHHHcCCeEEEeccCCCCChHHHHH
Q 030504 135 KAKQVTFHRKKNLQYYEISAKSNYNFEKPFL 165 (176)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~ 165 (176)
-.....+...+.|+..++ +|++++++..
T Consensus 296 -G~~ls~~~~~~~Pi~~i~--~Gq~v~Dl~~ 323 (336)
T PRK14974 296 -GAALSIAYVIGKPILFLG--VGQGYDDLIP 323 (336)
T ss_pred -cHHHHHHHHHCcCEEEEe--CCCChhhccc
Confidence 244555666788888887 7999987654
|
|
| >KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=98.47 E-value=6.5e-07 Score=61.88 Aligned_cols=116 Identities=17% Similarity=0.295 Sum_probs=69.4
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHhcCCCCCcc----ccceeEEEeEEEEEecCcEEEEEEEeCCCcc-------ccccc--
Q 030504 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKY----EPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE-------KFGGL-- 78 (176)
Q Consensus 12 ~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~-------~~~~~-- 78 (176)
-.++|+-+|..|.|||||+..+++-.+.... .|........+...-.+-.+++++.||.|.- .|..+
T Consensus 41 F~FNilCvGETg~GKsTLmdtLFNt~f~~~p~~H~~~~V~L~~~TyelqEsnvrlKLtiv~tvGfGDQinK~~Syk~iVd 120 (406)
T KOG3859|consen 41 FCFNILCVGETGLGKSTLMDTLFNTKFESEPSTHTLPNVKLQANTYELQESNVRLKLTIVDTVGFGDQINKEDSYKPIVD 120 (406)
T ss_pred ceEEEEEeccCCccHHHHHHHHhccccCCCCCccCCCCceeecchhhhhhcCeeEEEEEEeecccccccCcccccchHHH
Confidence 3689999999999999999998876664332 2333444444444445667889999999821 11111
Q ss_pred -----ccc-------------ccc--cccEEEEEEeCCChhhhhhHHHH-HHHHhhhcCCCCEEEEEeCCCCCc
Q 030504 79 -----RDG-------------YYI--HGQCAIIMFDVTARLTYKNVPTW-HRDLCRVCENIPIVLCGNKVDVKN 131 (176)
Q Consensus 79 -----~~~-------------~~~--~~~~~i~v~d~~~~~s~~~~~~~-~~~~~~~~~~~p~liv~nK~Dl~~ 131 (176)
..+ .+. +.++++|.+.++ ++++..+... ...+. ....+|.++-|.|...
T Consensus 121 yidaQFEaYLQEELKi~Rsl~~~hDsRiH~CLYFI~PT-GH~LKslDLvtmk~Ld---skVNIIPvIAKaDtis 190 (406)
T KOG3859|consen 121 YIDAQFEAYLQEELKIRRSLFTYHDSRIHVCLYFISPT-GHSLKSLDLVTMKKLD---SKVNIIPVIAKADTIS 190 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCceEEEEEEecCC-CcchhHHHHHHHHHHh---hhhhhHHHHHHhhhhh
Confidence 111 122 346666666665 4455555421 22222 2556677777888654
|
|
| >TIGR01425 SRP54_euk signal recognition particle protein SRP54 | Back alignment and domain information |
|---|
Probab=98.44 E-value=3.6e-06 Score=62.53 Aligned_cols=142 Identities=13% Similarity=0.065 Sum_probs=74.8
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHhc-----CCC-----CCccc-----------cceeEEEeEEEEEec------------
Q 030504 12 PSFKLVIVGDGGTGKTTFVKRHLT-----GEF-----EKKYE-----------PTIGVEVHPLDFFTN------------ 58 (176)
Q Consensus 12 ~~~~i~i~G~~~~GKttl~~~~~~-----~~~-----~~~~~-----------~~~~~~~~~~~~~~~------------ 58 (176)
++.-|+++|++||||||++..+.. |.- ...+. ...+..+.......+
T Consensus 99 ~~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~R~aA~eQLk~~a~~~~vp~~~~~~~~dp~~i~~~~l~~~ 178 (429)
T TIGR01425 99 KQNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTFRAGAFDQLKQNATKARIPFYGSYTESDPVKIASEGVEKF 178 (429)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcccchhHHHHHHHHhhccCCeEEeecCCCCHHHHHHHHHHHH
Confidence 357799999999999999988642 210 00111 001111111000000
Q ss_pred -CcEEEEEEEeCCCcccccc-cccc-----ccccccEEEEEEeCCChhhhhhHHHHHHHHhhhcCCCCEEEEEeCCCCCc
Q 030504 59 -CGKIRFYCWDTAGQEKFGG-LRDG-----YYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKN 131 (176)
Q Consensus 59 -~~~~~~~~~D~~g~~~~~~-~~~~-----~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~~ 131 (176)
...+.+.++||+|...... .... -....+.+++|+|+..... .......+.+. -.+--+|+||.|-..
T Consensus 179 ~~~~~DvViIDTaGr~~~d~~lm~El~~i~~~~~p~e~lLVlda~~Gq~---a~~~a~~F~~~--~~~~g~IlTKlD~~a 253 (429)
T TIGR01425 179 KKENFDIIIVDTSGRHKQEDSLFEEMLQVAEAIQPDNIIFVMDGSIGQA---AEAQAKAFKDS--VDVGSVIITKLDGHA 253 (429)
T ss_pred HhCCCCEEEEECCCCCcchHHHHHHHHHHhhhcCCcEEEEEeccccChh---HHHHHHHHHhc--cCCcEEEEECccCCC
Confidence 1246789999999643221 1111 1235688999999875432 22222333322 235677789999854
Q ss_pred cccCHHHHHHHHHcCCeEEEeccCCCCChHH
Q 030504 132 RQVKAKQVTFHRKKNLQYYEISAKSNYNFEK 162 (176)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~ 162 (176)
+. -.........+.|+..++ +|+.+++
T Consensus 254 rg--G~aLs~~~~t~~PI~fig--~Ge~v~D 280 (429)
T TIGR01425 254 KG--GGALSAVAATKSPIIFIG--TGEHIDD 280 (429)
T ss_pred Cc--cHHhhhHHHHCCCeEEEc--CCCChhh
Confidence 32 233455556666665553 3444433
|
This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model. |
| >TIGR00157 ribosome small subunit-dependent GTPase A | Back alignment and domain information |
|---|
Probab=98.43 E-value=5.8e-07 Score=62.40 Aligned_cols=57 Identities=19% Similarity=0.176 Sum_probs=35.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCc--c----ccceeEEEeEEEEEecCcEEEEEEEeCCCccc
Q 030504 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKK--Y----EPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK 74 (176)
Q Consensus 14 ~~i~i~G~~~~GKttl~~~~~~~~~~~~--~----~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~ 74 (176)
-.++++|.+|||||||+|+++....... . ....++|.....+... .+ .++||||...
T Consensus 121 ~~~~~~G~sgvGKStLiN~L~~~~~~~t~~i~~~~~~G~hTT~~~~l~~l~-~~---~liDtPG~~~ 183 (245)
T TIGR00157 121 RISVFAGQSGVGKSSLINALDPSVKQQVNDISSKLGLGKHTTTHVELFHFH-GG---LIADTPGFNE 183 (245)
T ss_pred CEEEEECCCCCCHHHHHHHHhhhhhccccceeccCCCCCCcCCceEEEEcC-Cc---EEEeCCCccc
Confidence 3689999999999999999775432211 1 1111234444444442 22 6899999764
|
The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option). |
| >COG1162 Predicted GTPases [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.41 E-value=5.2e-06 Score=58.46 Aligned_cols=95 Identities=18% Similarity=0.052 Sum_probs=70.2
Q ss_pred ccccccccccccccEEEEEEeCCChh-hhhhHHHHHHHHhhhcCCCCEEEEEeCCCCCccccCH--HHHHHHHHcCCeEE
Q 030504 74 KFGGLRDGYYIHGQCAIIMFDVTARL-TYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKA--KQVTFHRKKNLQYY 150 (176)
Q Consensus 74 ~~~~~~~~~~~~~~~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~~~~~~~--~~~~~~~~~~~~~~ 150 (176)
+-..+.+....+.|-.++|+.+.+|. +...+..++-..... +..-++++||.||.+..... +....++..+.+.+
T Consensus 68 Rkn~L~Rp~v~n~d~~iiIvs~~~P~~~~~~ldR~Lv~ae~~--gi~pvIvlnK~DL~~~~~~~~~~~~~~y~~~gy~v~ 145 (301)
T COG1162 68 RKNVLIRPPVANNDQAIIVVSLVDPDFNTNLLDRYLVLAEAG--GIEPVIVLNKIDLLDDEEAAVKELLREYEDIGYPVL 145 (301)
T ss_pred ccCceeCCcccccceEEEEEeccCCCCCHHHHHHHHHHHHHc--CCcEEEEEEccccCcchHHHHHHHHHHHHhCCeeEE
Confidence 33445555566688888888888876 444555554444443 77778889999998765544 45677888999999
Q ss_pred EeccCCCCChHHHHHHHHHH
Q 030504 151 EISAKSNYNFEKPFLYLARK 170 (176)
Q Consensus 151 ~~S~~~~~~v~~~~~~l~~~ 170 (176)
.+|+++++|++++..++...
T Consensus 146 ~~s~~~~~~~~~l~~~l~~~ 165 (301)
T COG1162 146 FVSAKNGDGLEELAELLAGK 165 (301)
T ss_pred EecCcCcccHHHHHHHhcCC
Confidence 99999999999998887543
|
|
| >KOG0448 consensus Mitofusin 1 GTPase, involved in mitochondrila biogenesis [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.40 E-value=8.6e-06 Score=62.70 Aligned_cols=66 Identities=14% Similarity=0.246 Sum_probs=39.6
Q ss_pred EEEEeCCCccc---cccccccccccccEEEEEEeCCChhhhhhHHHHHHHHhhhcCCCCEEEEEeCCCCCcc
Q 030504 64 FYCWDTAGQEK---FGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNR 132 (176)
Q Consensus 64 ~~~~D~~g~~~---~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~~~ 132 (176)
+.+.|.||... ..+-...+-..+|++|+|.++.+.-+ ....+++....+. ...+.|+.||.|....
T Consensus 208 ivliDsPGld~~se~tswid~~cldaDVfVlV~NaEntlt-~sek~Ff~~vs~~--KpniFIlnnkwDasas 276 (749)
T KOG0448|consen 208 IVLIDSPGLDVDSELTSWIDSFCLDADVFVLVVNAENTLT-LSEKQFFHKVSEE--KPNIFILNNKWDASAS 276 (749)
T ss_pred ceeccCCCCCCchhhhHHHHHHhhcCCeEEEEecCccHhH-HHHHHHHHHhhcc--CCcEEEEechhhhhcc
Confidence 55677787543 23334445568999999999865532 2223444444443 4446666788898654
|
|
| >COG1162 Predicted GTPases [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.40 E-value=7.1e-07 Score=62.69 Aligned_cols=59 Identities=25% Similarity=0.314 Sum_probs=36.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCC------CCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccc
Q 030504 15 KLVIVGDGGTGKTTFVKRHLTGEF------EKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFG 76 (176)
Q Consensus 15 ~i~i~G~~~~GKttl~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~ 76 (176)
-.+++|.+|||||||+|++..... .........+|....-+..+..+ .+.||||...+.
T Consensus 166 ~svl~GqSGVGKSSLiN~L~p~~~~~t~eIS~~~~rGkHTTt~~~l~~l~~gG---~iiDTPGf~~~~ 230 (301)
T COG1162 166 ITVLLGQSGVGKSTLINALLPELNQKTGEISEKLGRGRHTTTHVELFPLPGGG---WIIDTPGFRSLG 230 (301)
T ss_pred eEEEECCCCCcHHHHHHhhCchhhhhhhhhcccCCCCCCccceEEEEEcCCCC---EEEeCCCCCccC
Confidence 578999999999999999764221 11111222234444444454344 478999976543
|
|
| >cd01854 YjeQ_engC YjeQ/EngC | Back alignment and domain information |
|---|
Probab=98.32 E-value=2e-06 Score=61.18 Aligned_cols=59 Identities=25% Similarity=0.220 Sum_probs=36.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCcc------ccceeEEEeEEEEEecCcEEEEEEEeCCCcccc
Q 030504 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKY------EPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKF 75 (176)
Q Consensus 14 ~~i~i~G~~~~GKttl~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~ 75 (176)
-.++++|++|+|||||+|.++........ ....+++.....+...... .++||||...+
T Consensus 162 k~~~~~G~sg~GKSTlin~l~~~~~~~~g~v~~~~~~g~~tT~~~~~~~~~~~~---~liDtPG~~~~ 226 (287)
T cd01854 162 KTSVLVGQSGVGKSTLINALLPDLDLATGEISEKLGRGRHTTTHRELFPLPGGG---LLIDTPGFREF 226 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHhchhhccccceeccCCCCCcccceEEEEEcCCCC---EEEECCCCCcc
Confidence 57999999999999999997754322110 1111233333344443222 58999998754
|
YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation. |
| >cd03112 CobW_like The function of this protein family is unkown | Back alignment and domain information |
|---|
Probab=98.31 E-value=3e-06 Score=54.89 Aligned_cols=21 Identities=43% Similarity=0.529 Sum_probs=18.4
Q ss_pred EEEEcCCCCcHHHHHHHHhcC
Q 030504 16 LVIVGDGGTGKTTFVKRHLTG 36 (176)
Q Consensus 16 i~i~G~~~~GKttl~~~~~~~ 36 (176)
++++|..|+|||||+++++..
T Consensus 3 ~~l~G~~GsGKTtl~~~l~~~ 23 (158)
T cd03112 3 TVLTGFLGAGKTTLLNHILTE 23 (158)
T ss_pred EEEEECCCCCHHHHHHHHHhc
Confidence 578999999999999987754
|
The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K. |
| >KOG1487 consensus GTP-binding protein DRG1 (ODN superfamily) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.27 E-value=5e-06 Score=57.06 Aligned_cols=91 Identities=19% Similarity=0.154 Sum_probs=63.4
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCcccc-------cccccccccc
Q 030504 13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKF-------GGLRDGYYIH 85 (176)
Q Consensus 13 ~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~-------~~~~~~~~~~ 85 (176)
.-+|-++|-|++||||++.. +.|.+.+. .+..+.+..+.......+..++++.|.||.-+. ....-+..+.
T Consensus 59 ~a~vg~vgFPSvGksTl~~~-l~g~~s~v-asyefttl~~vpG~~~y~gaKiqlldlpgiiegakdgkgrg~qviavart 136 (358)
T KOG1487|consen 59 DARVGFVGFPSVGKSTLLSK-LTGTFSEV-AAYEFTTLTTVPGVIRYKGAKIQLLDLPGIIEGAKDGKGRGKQVIAVART 136 (358)
T ss_pred ceeeeEEecCccchhhhhhh-hcCCCCcc-ccccceeEEEecceEeccccceeeecCcchhcccccCCCCccEEEEEeec
Confidence 34899999999999999998 55655443 334444555554444556778999999995322 1234455678
Q ss_pred ccEEEEEEeCCChhhhhhHH
Q 030504 86 GQCAIIMFDVTARLTYKNVP 105 (176)
Q Consensus 86 ~~~~i~v~d~~~~~s~~~~~ 105 (176)
++.+++|.|+..|-+-..+.
T Consensus 137 cnli~~vld~~kp~~hk~~i 156 (358)
T KOG1487|consen 137 CNLIFIVLDVLKPLSHKKII 156 (358)
T ss_pred ccEEEEEeeccCcccHHHHH
Confidence 99999999999886555443
|
|
| >PRK00098 GTPase RsgA; Reviewed | Back alignment and domain information |
|---|
Probab=98.25 E-value=3.2e-06 Score=60.42 Aligned_cols=57 Identities=21% Similarity=0.129 Sum_probs=34.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCccccce-------eEEEeEEEEEecCcEEEEEEEeCCCccc
Q 030504 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTI-------GVEVHPLDFFTNCGKIRFYCWDTAGQEK 74 (176)
Q Consensus 14 ~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~D~~g~~~ 74 (176)
..++++|++|+|||||+|.++....... .... .++.....+..+.. ..++||||...
T Consensus 165 k~~~~~G~sgvGKStlin~l~~~~~~~~-g~v~~~~~~G~htT~~~~~~~~~~~---~~~~DtpG~~~ 228 (298)
T PRK00098 165 KVTVLAGQSGVGKSTLLNALAPDLELKT-GEISEALGRGKHTTTHVELYDLPGG---GLLIDTPGFSS 228 (298)
T ss_pred ceEEEECCCCCCHHHHHHHHhCCcCCCC-cceeccCCCCCcccccEEEEEcCCC---cEEEECCCcCc
Confidence 4589999999999999999765332211 1111 12333333333322 36899999654
|
|
| >PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency [] | Back alignment and domain information |
|---|
Probab=98.24 E-value=1e-05 Score=52.86 Aligned_cols=137 Identities=20% Similarity=0.300 Sum_probs=61.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeC-CCcc--------------------
Q 030504 15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDT-AGQE-------------------- 73 (176)
Q Consensus 15 ~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~-~g~~-------------------- 73 (176)
||++.|++|+|||||+++++..- .....+..|+ .+.....++...-|.+.|. .|.+
T Consensus 1 ~i~iTG~pG~GKTTll~k~i~~l-~~~~~~v~Gf--~t~evr~~g~r~GF~iv~l~~g~~~~la~~~~~~~~~vgky~v~ 77 (168)
T PF03266_consen 1 HIFITGPPGVGKTTLLKKVIEEL-KKKGLPVGGF--YTEEVRENGRRIGFDIVDLNSGEEAILARVDFRSGPRVGKYFVD 77 (168)
T ss_dssp EEEEES-TTSSHHHHHHHHHHHH-HHTCGGEEEE--EEEEEETTSSEEEEEEEET-TS-EEEEEETTSS-SCECTTCEE-
T ss_pred CEEEECcCCCCHHHHHHHHHHHh-hccCCccceE--EeecccCCCceEEEEEEECcCCCccccccccccccccCCCEEEc
Confidence 68999999999999999966322 1111223332 2222333445555666666 3311
Q ss_pred --cccccccccccc--ccEEEEEEeCCChhhhhhHHHHHHHHhhhc-CCCCEEEEEeCCCCCccccCHHHHHHHHHcCCe
Q 030504 74 --KFGGLRDGYYIH--GQCAIIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQ 148 (176)
Q Consensus 74 --~~~~~~~~~~~~--~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~liv~nK~Dl~~~~~~~~~~~~~~~~~~~ 148 (176)
.+.......+.. .+.=++|+|---+- ......|.+.+.... +++|++.++.+.. ...-..++....++.
T Consensus 78 ~e~fe~~~~~~L~~~~~~~~liviDEIG~m-El~~~~F~~~v~~~l~s~~~vi~vv~~~~-----~~~~l~~i~~~~~~~ 151 (168)
T PF03266_consen 78 LESFEEIGLPALRNALSSSDLIVIDEIGKM-ELKSPGFREAVEKLLDSNKPVIGVVHKRS-----DNPFLEEIKRRPDVK 151 (168)
T ss_dssp HHHHHCCCCCCCHHHHHCCHEEEE---STT-CCC-CHHHHHHHHHHCTTSEEEEE--SS-------SCCHHHHHTTTTSE
T ss_pred HHHHHHHHHHHHHhhcCCCCEEEEeccchh-hhcCHHHHHHHHHHHcCCCcEEEEEecCC-----CcHHHHHHHhCCCcE
Confidence 111111112222 12236666643221 112223334443333 4788888776662 111123444455677
Q ss_pred EEEeccCCCCCh
Q 030504 149 YYEISAKSNYNF 160 (176)
Q Consensus 149 ~~~~S~~~~~~v 160 (176)
+++++....+-+
T Consensus 152 i~~vt~~NRd~l 163 (168)
T PF03266_consen 152 IFEVTEENRDAL 163 (168)
T ss_dssp EEE--TTTCCCH
T ss_pred EEEeChhHHhhH
Confidence 888766554443
|
It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A. |
| >cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes | Back alignment and domain information |
|---|
Probab=98.23 E-value=9.3e-06 Score=53.40 Aligned_cols=84 Identities=10% Similarity=0.017 Sum_probs=46.0
Q ss_pred EEEEEEEeCCCccccccc----cccc--cccccEEEEEEeCCChhhhhhHHHHHHHHhhhcCCCCEEEEEeCCCCCcccc
Q 030504 61 KIRFYCWDTAGQEKFGGL----RDGY--YIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQV 134 (176)
Q Consensus 61 ~~~~~~~D~~g~~~~~~~----~~~~--~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~~~~~ 134 (176)
...+.+.|++|....... ...+ ....+.+++|+|+..... ...+...+.+.. + ..-+|.||.|...+.-
T Consensus 82 ~~d~viiDt~g~~~~~~~~l~~l~~l~~~~~~~~~~lVv~~~~~~~---~~~~~~~~~~~~-~-~~~viltk~D~~~~~g 156 (173)
T cd03115 82 NFDVVIVDTAGRLQIDENLMEELKKIKRVVKPDEVLLVVDAMTGQD---AVNQAKAFNEAL-G-ITGVILTKLDGDARGG 156 (173)
T ss_pred CCCEEEEECcccchhhHHHHHHHHHHHhhcCCCeEEEEEECCCChH---HHHHHHHHHhhC-C-CCEEEEECCcCCCCcc
Confidence 445788999996432111 1111 134899999999865432 223333333322 2 3566779999765332
Q ss_pred CHHHHHHHHHcCCeEEE
Q 030504 135 KAKQVTFHRKKNLQYYE 151 (176)
Q Consensus 135 ~~~~~~~~~~~~~~~~~ 151 (176)
...+.+...++++..
T Consensus 157 --~~~~~~~~~~~p~~~ 171 (173)
T cd03115 157 --AALSIRAVTGKPIKF 171 (173)
T ss_pred --hhhhhHHHHCcCeEe
Confidence 223455556655443
|
SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain. |
| >PRK13695 putative NTPase; Provisional | Back alignment and domain information |
|---|
Probab=98.21 E-value=7.8e-05 Score=49.09 Aligned_cols=21 Identities=43% Similarity=0.582 Sum_probs=18.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHh
Q 030504 14 FKLVIVGDGGTGKTTFVKRHL 34 (176)
Q Consensus 14 ~~i~i~G~~~~GKttl~~~~~ 34 (176)
+||+++|++|+|||||+..+.
T Consensus 1 ~~i~ltG~~G~GKTTll~~i~ 21 (174)
T PRK13695 1 MKIGITGPPGVGKTTLVLKIA 21 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 489999999999999999854
|
|
| >KOG0447 consensus Dynamin-like GTP binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.19 E-value=8.7e-06 Score=61.51 Aligned_cols=69 Identities=14% Similarity=0.141 Sum_probs=44.7
Q ss_pred EEEEEeCCCc-------------cccccccccccccccEEEEEEeCCChhhhh-hHHHHHHHHhhhcCCCCEEEEEeCCC
Q 030504 63 RFYCWDTAGQ-------------EKFGGLRDGYYIHGQCAIIMFDVTARLTYK-NVPTWHRDLCRVCENIPIVLCGNKVD 128 (176)
Q Consensus 63 ~~~~~D~~g~-------------~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~-~~~~~~~~~~~~~~~~p~liv~nK~D 128 (176)
...+.|.||. +....+..++..+.+++|+|+--..-.... .+.++...+... +...|+|+||.|
T Consensus 413 RMVLVDLPGvIsTvT~dMA~dTKd~I~~msKayM~NPNAIILCIQDGSVDAERSnVTDLVsq~DP~--GrRTIfVLTKVD 490 (980)
T KOG0447|consen 413 RMVLVDLPGVINTVTSGMAPDTKETIFSISKAYMQNPNAIILCIQDGSVDAERSIVTDLVSQMDPH--GRRTIFVLTKVD 490 (980)
T ss_pred eeEEecCCchhhhhcccccccchHHHHHHHHHHhcCCCeEEEEeccCCcchhhhhHHHHHHhcCCC--CCeeEEEEeecc
Confidence 4667899983 112335667888999999998655433222 222333333332 788999999999
Q ss_pred CCccc
Q 030504 129 VKNRQ 133 (176)
Q Consensus 129 l~~~~ 133 (176)
+...+
T Consensus 491 lAEkn 495 (980)
T KOG0447|consen 491 LAEKN 495 (980)
T ss_pred hhhhc
Confidence 98754
|
|
| >PRK12727 flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=98.14 E-value=6.5e-05 Score=57.24 Aligned_cols=91 Identities=11% Similarity=0.157 Sum_probs=51.5
Q ss_pred EEEEEEEeCCCcccccccccc---ccc--cccEEEEEEeCCChhhhhhHHHHHHHHhhhcCCCCEEEEEeCCCCCccccC
Q 030504 61 KIRFYCWDTAGQEKFGGLRDG---YYI--HGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVK 135 (176)
Q Consensus 61 ~~~~~~~D~~g~~~~~~~~~~---~~~--~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~~~~~~ 135 (176)
.+.+.++||+|.......... .+. .....++|++.+.. ...+...+..+.. ..+.-+|+||.|.....
T Consensus 428 ~~DLVLIDTaG~s~~D~~l~eeL~~L~aa~~~a~lLVLpAtss--~~Dl~eii~~f~~---~~~~gvILTKlDEt~~l-- 500 (559)
T PRK12727 428 DYKLVLIDTAGMGQRDRALAAQLNWLRAARQVTSLLVLPANAH--FSDLDEVVRRFAH---AKPQGVVLTKLDETGRF-- 500 (559)
T ss_pred cCCEEEecCCCcchhhHHHHHHHHHHHHhhcCCcEEEEECCCC--hhHHHHHHHHHHh---hCCeEEEEecCcCccch--
Confidence 467889999996432211000 010 12345667776642 2333333333322 34677889999985433
Q ss_pred HHHHHHHHHcCCeEEEeccCCCCCh
Q 030504 136 AKQVTFHRKKNLQYYEISAKSNYNF 160 (176)
Q Consensus 136 ~~~~~~~~~~~~~~~~~S~~~~~~v 160 (176)
..........++++..++ +|+.|
T Consensus 501 G~aLsv~~~~~LPI~yvt--~GQ~V 523 (559)
T PRK12727 501 GSALSVVVDHQMPITWVT--DGQRV 523 (559)
T ss_pred hHHHHHHHHhCCCEEEEe--CCCCc
Confidence 466677778888877774 45555
|
|
| >PRK00771 signal recognition particle protein Srp54; Provisional | Back alignment and domain information |
|---|
Probab=98.14 E-value=3.5e-05 Score=57.77 Aligned_cols=91 Identities=10% Similarity=0.030 Sum_probs=52.5
Q ss_pred EEEEEEeCCCcccccccc------ccccccccEEEEEEeCCChhhhhhHHHHHHHHhhhcCCCC-EEEEEeCCCCCcccc
Q 030504 62 IRFYCWDTAGQEKFGGLR------DGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIP-IVLCGNKVDVKNRQV 134 (176)
Q Consensus 62 ~~~~~~D~~g~~~~~~~~------~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p-~liv~nK~Dl~~~~~ 134 (176)
..+.++||+|........ ......+|.+++|+|++... ........+.. ..+ .-+|.||.|-..+.
T Consensus 176 ~DvVIIDTAGr~~~d~~lm~El~~l~~~~~pdevlLVvda~~gq---~av~~a~~F~~---~l~i~gvIlTKlD~~a~~- 248 (437)
T PRK00771 176 ADVIIVDTAGRHALEEDLIEEMKEIKEAVKPDEVLLVIDATIGQ---QAKNQAKAFHE---AVGIGGIIITKLDGTAKG- 248 (437)
T ss_pred CCEEEEECCCcccchHHHHHHHHHHHHHhcccceeEEEeccccH---HHHHHHHHHHh---cCCCCEEEEecccCCCcc-
Confidence 368999999965432110 11133578999999987642 22222223222 233 35678999975433
Q ss_pred CHHHHHHHHHcCCeEEEeccCCCCChHH
Q 030504 135 KAKQVTFHRKKNLQYYEISAKSNYNFEK 162 (176)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~S~~~~~~v~~ 162 (176)
-.........+.|+..++. |+.+++
T Consensus 249 -G~~ls~~~~~~~Pi~fig~--Ge~v~D 273 (437)
T PRK00771 249 -GGALSAVAETGAPIKFIGT--GEKIDD 273 (437)
T ss_pred -cHHHHHHHHHCcCEEEEec--CCCccc
Confidence 3456666777777766643 444433
|
|
| >TIGR00959 ffh signal recognition particle protein | Back alignment and domain information |
|---|
Probab=98.13 E-value=3.6e-05 Score=57.51 Aligned_cols=93 Identities=11% Similarity=0.075 Sum_probs=53.2
Q ss_pred EEEEEEEeCCCcccccc-cccc-----ccccccEEEEEEeCCChhhhhhHHHHHHHHhhhcCCCCEEEEEeCCCCCcccc
Q 030504 61 KIRFYCWDTAGQEKFGG-LRDG-----YYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQV 134 (176)
Q Consensus 61 ~~~~~~~D~~g~~~~~~-~~~~-----~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~~~~~ 134 (176)
.+.+.++||+|...... .... .....+.+++|+|+... +.+......+.... + ..-+|.||.|-..+.-
T Consensus 182 ~~DvVIIDTaGr~~~d~~l~~eL~~i~~~~~p~e~lLVvda~tg---q~~~~~a~~f~~~v-~-i~giIlTKlD~~~~~G 256 (428)
T TIGR00959 182 GFDVVIVDTAGRLQIDEELMEELAAIKEILNPDEILLVVDAMTG---QDAVNTAKTFNERL-G-LTGVVLTKLDGDARGG 256 (428)
T ss_pred CCCEEEEeCCCccccCHHHHHHHHHHHHhhCCceEEEEEeccch---HHHHHHHHHHHhhC-C-CCEEEEeCccCccccc
Confidence 35689999999543211 1111 12357889999998754 33334444444322 2 2356689999643322
Q ss_pred CHHHHHHHHHcCCeEEEeccCCCCChHH
Q 030504 135 KAKQVTFHRKKNLQYYEISAKSNYNFEK 162 (176)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~S~~~~~~v~~ 162 (176)
.........++|+..++. |+.+++
T Consensus 257 --~~lsi~~~~~~PI~fi~~--Ge~i~d 280 (428)
T TIGR00959 257 --AALSVRSVTGKPIKFIGV--GEKIDD 280 (428)
T ss_pred --HHHHHHHHHCcCEEEEeC--CCChhh
Confidence 256667777787766644 444444
|
This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle. |
| >PRK10867 signal recognition particle protein; Provisional | Back alignment and domain information |
|---|
Probab=98.10 E-value=3.9e-05 Score=57.39 Aligned_cols=93 Identities=12% Similarity=0.080 Sum_probs=51.6
Q ss_pred EEEEEEEeCCCcccccc-cccc-----ccccccEEEEEEeCCChhhhhhHHHHHHHHhhhcCCCCEEEEEeCCCCCcccc
Q 030504 61 KIRFYCWDTAGQEKFGG-LRDG-----YYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQV 134 (176)
Q Consensus 61 ~~~~~~~D~~g~~~~~~-~~~~-----~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~~~~~ 134 (176)
.+.+.++||+|...... .... ..-..+.+++|+|+... +.+......+.+.. + ..-+|.||.|-..+.-
T Consensus 183 ~~DvVIIDTaGrl~~d~~lm~eL~~i~~~v~p~evllVlda~~g---q~av~~a~~F~~~~-~-i~giIlTKlD~~~rgG 257 (433)
T PRK10867 183 GYDVVIVDTAGRLHIDEELMDELKAIKAAVNPDEILLVVDAMTG---QDAVNTAKAFNEAL-G-LTGVILTKLDGDARGG 257 (433)
T ss_pred CCCEEEEeCCCCcccCHHHHHHHHHHHHhhCCCeEEEEEecccH---HHHHHHHHHHHhhC-C-CCEEEEeCccCccccc
Confidence 35689999999543211 1111 11256788999998654 33333333333321 2 2356679999643322
Q ss_pred CHHHHHHHHHcCCeEEEeccCCCCChHH
Q 030504 135 KAKQVTFHRKKNLQYYEISAKSNYNFEK 162 (176)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~S~~~~~~v~~ 162 (176)
.........++|+..++. |+.+++
T Consensus 258 --~alsi~~~~~~PI~fig~--Ge~v~D 281 (433)
T PRK10867 258 --AALSIRAVTGKPIKFIGT--GEKLDD 281 (433)
T ss_pred --HHHHHHHHHCcCEEEEeC--CCcccc
Confidence 356666777787766644 444433
|
|
| >cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily | Back alignment and domain information |
|---|
Probab=98.09 E-value=1.7e-05 Score=50.33 Aligned_cols=106 Identities=11% Similarity=0.117 Sum_probs=61.4
Q ss_pred EEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccccccccccEEEEEEeCCC
Q 030504 18 IVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTA 97 (176)
Q Consensus 18 i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~ 97 (176)
.-|.+|+|||++...+... +......+.-++.+.. ...-.+.+.++|+|+.. .......+..+|.++++.+.+
T Consensus 5 ~~~kgg~gkt~~~~~~a~~-~~~~~~~~~~vd~D~~---~~~~~yd~VIiD~p~~~--~~~~~~~l~~aD~vviv~~~~- 77 (139)
T cd02038 5 TSGKGGVGKTNISANLALA-LAKLGKRVLLLDADLG---LANLDYDYIIIDTGAGI--SDNVLDFFLAADEVIVVTTPE- 77 (139)
T ss_pred EcCCCCCcHHHHHHHHHHH-HHHCCCcEEEEECCCC---CCCCCCCEEEEECCCCC--CHHHHHHHHhCCeEEEEcCCC-
Confidence 3457799999997764321 1111111111121111 01112678999999743 333456788999999999986
Q ss_pred hhhhhhHHHHHHHHhhhcCCCCEEEEEeCCCCC
Q 030504 98 RLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVK 130 (176)
Q Consensus 98 ~~s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~ 130 (176)
..++......++.+.+.....++.+|.|+.+..
T Consensus 78 ~~s~~~~~~~l~~l~~~~~~~~~~lVvN~~~~~ 110 (139)
T cd02038 78 PTSITDAYALIKKLAKQLRVLNFRVVVNRAESP 110 (139)
T ss_pred hhHHHHHHHHHHHHHHhcCCCCEEEEEeCCCCH
Confidence 344444444444444433456788999999754
|
It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity. |
| >PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=98.08 E-value=2.3e-05 Score=57.61 Aligned_cols=92 Identities=9% Similarity=0.033 Sum_probs=51.8
Q ss_pred EEEEEEeCCCccccccc----ccccc--ccccEEEEEEeCCChhhhhhHHHHHHHHhhhcCCCCEEEEEeCCCCCccccC
Q 030504 62 IRFYCWDTAGQEKFGGL----RDGYY--IHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVK 135 (176)
Q Consensus 62 ~~~~~~D~~g~~~~~~~----~~~~~--~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~~~~~~ 135 (176)
+.+.++||+|....... ....+ ...+.+++|+|++... +.+...+..+.. -..-=+|+||.|-... .
T Consensus 321 ~DvVLIDTaGRs~kd~~lm~EL~~~lk~~~PdevlLVLsATtk~--~d~~~i~~~F~~---~~idglI~TKLDET~k--~ 393 (436)
T PRK11889 321 VDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKS--KDMIEIITNFKD---IHIDGIVFTKFDETAS--S 393 (436)
T ss_pred CCEEEEeCccccCcCHHHHHHHHHHHhhcCCCeEEEEECCccCh--HHHHHHHHHhcC---CCCCEEEEEcccCCCC--c
Confidence 57889999996532211 11222 2346778888876432 222223333322 1233566899997653 3
Q ss_pred HHHHHHHHHcCCeEEEeccCCCCChHH
Q 030504 136 AKQVTFHRKKNLQYYEISAKSNYNFEK 162 (176)
Q Consensus 136 ~~~~~~~~~~~~~~~~~S~~~~~~v~~ 162 (176)
-...+++...++|+..++ +|++|.+
T Consensus 394 G~iLni~~~~~lPIsyit--~GQ~VPe 418 (436)
T PRK11889 394 GELLKIPAVSSAPIVLMT--DGQDVKK 418 (436)
T ss_pred cHHHHHHHHHCcCEEEEe--CCCCCCc
Confidence 355677777787776663 5565544
|
|
| >PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=98.05 E-value=4.9e-05 Score=55.72 Aligned_cols=145 Identities=14% Similarity=0.054 Sum_probs=73.4
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCCCCC-cccc--ce--------------------eEEEeEEEEE-------ecCcEE
Q 030504 13 SFKLVIVGDGGTGKTTFVKRHLTGEFEK-KYEP--TI--------------------GVEVHPLDFF-------TNCGKI 62 (176)
Q Consensus 13 ~~~i~i~G~~~~GKttl~~~~~~~~~~~-~~~~--~~--------------------~~~~~~~~~~-------~~~~~~ 62 (176)
.-.++++|++|+||||++.++....... .... .. +......... ......
T Consensus 137 g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l~~l~~~ 216 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLALAELRNK 216 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHHHHHhcCC
Confidence 4578999999999999999865321100 0000 00 1111100000 011234
Q ss_pred EEEEEeCCCccccccccc---ccc---ccccEEEEEEeCCChh-hhhhHHHHHHHHhhhcC---CCCEEEEEeCCCCCcc
Q 030504 63 RFYCWDTAGQEKFGGLRD---GYY---IHGQCAIIMFDVTARL-TYKNVPTWHRDLCRVCE---NIPIVLCGNKVDVKNR 132 (176)
Q Consensus 63 ~~~~~D~~g~~~~~~~~~---~~~---~~~~~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~---~~p~liv~nK~Dl~~~ 132 (176)
.+.++||+|......... ..+ ....-.++|++++... ....+.+.+........ ..+-=+|.||.|-...
T Consensus 217 DlVLIDTaG~~~~d~~l~e~La~L~~~~~~~~~lLVLsAts~~~~l~evi~~f~~~~~~p~~~~~~~~~~I~TKlDEt~~ 296 (374)
T PRK14722 217 HMVLIDTIGMSQRDRTVSDQIAMLHGADTPVQRLLLLNATSHGDTLNEVVQAYRSAAGQPKAALPDLAGCILTKLDEASN 296 (374)
T ss_pred CEEEEcCCCCCcccHHHHHHHHHHhccCCCCeEEEEecCccChHHHHHHHHHHHHhhcccccccCCCCEEEEeccccCCC
Confidence 688999999664322111 111 2234568888888643 33333332322221100 0123566799997653
Q ss_pred ccCHHHHHHHHHcCCeEEEeccCCCCChH
Q 030504 133 QVKAKQVTFHRKKNLQYYEISAKSNYNFE 161 (176)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~S~~~~~~v~ 161 (176)
.-....+....++++..++ +|++|.
T Consensus 297 --~G~~l~~~~~~~lPi~yvt--~Gq~VP 321 (374)
T PRK14722 297 --LGGVLDTVIRYKLPVHYVS--TGQKVP 321 (374)
T ss_pred --ccHHHHHHHHHCcCeEEEe--cCCCCC
Confidence 2345566667777766653 344443
|
|
| >COG0523 Putative GTPases (G3E family) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.00 E-value=0.00019 Score=51.75 Aligned_cols=134 Identities=19% Similarity=0.110 Sum_probs=71.6
Q ss_pred EEEEcCCCCcHHHHHHHHhcCCCCCc----------------------cccceeEEEeEEEEEec-------------Cc
Q 030504 16 LVIVGDGGTGKTTFVKRHLTGEFEKK----------------------YEPTIGVEVHPLDFFTN-------------CG 60 (176)
Q Consensus 16 i~i~G~~~~GKttl~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~-------------~~ 60 (176)
.++-|-=|||||||+++++....... .......+..+...++. ..
T Consensus 4 tvitGFLGsGKTTlL~~lL~~~~g~kiAVIVNEfGEvgID~~~~l~~~~e~~~El~nGCICCT~r~dl~~~~~~L~~~~~ 83 (323)
T COG0523 4 TVITGFLGSGKTTLLNHLLANRDGKKIAVIVNEFGEVGIDGGALLSDTGEEVVELTNGCICCTVRDDLLPALERLLRRRD 83 (323)
T ss_pred EEEeecCCCCHHHHHHHHHhccCCCcEEEEEecCccccccCCCccccCCccEEEeCCceEEEeccchhHHHHHHHHhccC
Confidence 46778889999999999887443110 00011122222222211 11
Q ss_pred EEEEEEEeCCCcccccccccc-----c---cccccEEEEEEeCCChhhhhh-HHH-HHHHHhhhcCCCCEEEEEeCCCCC
Q 030504 61 KIRFYCWDTAGQEKFGGLRDG-----Y---YIHGQCAIIMFDVTARLTYKN-VPT-WHRDLCRVCENIPIVLCGNKVDVK 130 (176)
Q Consensus 61 ~~~~~~~D~~g~~~~~~~~~~-----~---~~~~~~~i~v~d~~~~~s~~~-~~~-~~~~~~~~~~~~p~liv~nK~Dl~ 130 (176)
.+...++++.|...-...... . .-..|+++-|+|+.+-..... ... ...++ ..-=++++||+|+.
T Consensus 84 ~~D~ivIEtTGlA~P~pv~~t~~~~~~l~~~~~ld~vvtvVDa~~~~~~~~~~~~~~~~Qi-----a~AD~ivlNK~Dlv 158 (323)
T COG0523 84 RPDRLVIETTGLADPAPVIQTFLTDPELADGVRLDGVVTVVDAAHFLEGLDAIAELAEDQL-----AFADVIVLNKTDLV 158 (323)
T ss_pred CCCEEEEeCCCCCCCHHHHHHhccccccccceeeceEEEEEeHHHhhhhHHHHHHHHHHHH-----HhCcEEEEecccCC
Confidence 134556677774332111111 1 224588999999876543222 111 22222 22346778999999
Q ss_pred ccccCHHHHHHHHHcC--CeEEEecc
Q 030504 131 NRQVKAKQVTFHRKKN--LQYYEISA 154 (176)
Q Consensus 131 ~~~~~~~~~~~~~~~~--~~~~~~S~ 154 (176)
+...........++.+ ..++.+|.
T Consensus 159 ~~~~l~~l~~~l~~lnp~A~i~~~~~ 184 (323)
T COG0523 159 DAEELEALEARLRKLNPRARIIETSY 184 (323)
T ss_pred CHHHHHHHHHHHHHhCCCCeEEEccc
Confidence 8765445556666654 56777766
|
|
| >PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated | Back alignment and domain information |
|---|
Probab=98.00 E-value=5.6e-05 Score=56.65 Aligned_cols=91 Identities=11% Similarity=0.077 Sum_probs=51.3
Q ss_pred EEEEEEEeCCCcccccc----ccccccc---cccEEEEEEeCCChhhhhhHHHHHHHHhhhcCCCCEEEEEeCCCCCccc
Q 030504 61 KIRFYCWDTAGQEKFGG----LRDGYYI---HGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQ 133 (176)
Q Consensus 61 ~~~~~~~D~~g~~~~~~----~~~~~~~---~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~~~~ 133 (176)
.+.+.++||+|...... ....++. ...-.++|++++... ..+...+..+... + +--++.||.|-....
T Consensus 299 ~~DlVlIDt~G~~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~~~~--~~l~~~~~~f~~~--~-~~~vI~TKlDet~~~ 373 (424)
T PRK05703 299 DCDVILIDTAGRSQRDKRLIEELKALIEFSGEPIDVYLVLSATTKY--EDLKDIYKHFSRL--P-LDGLIFTKLDETSSL 373 (424)
T ss_pred CCCEEEEeCCCCCCCCHHHHHHHHHHHhccCCCCeEEEEEECCCCH--HHHHHHHHHhCCC--C-CCEEEEecccccccc
Confidence 35788999999754321 1112222 234667778876432 2222222222211 2 235778999985432
Q ss_pred cCHHHHHHHHHcCCeEEEeccCCCCCh
Q 030504 134 VKAKQVTFHRKKNLQYYEISAKSNYNF 160 (176)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~S~~~~~~v 160 (176)
....++....++++..++ +|++|
T Consensus 374 --G~i~~~~~~~~lPv~yit--~Gq~V 396 (424)
T PRK05703 374 --GSILSLLIESGLPISYLT--NGQRV 396 (424)
T ss_pred --cHHHHHHHHHCCCEEEEe--CCCCC
Confidence 256788888888887774 55665
|
|
| >COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Probab=97.99 E-value=0.00015 Score=49.30 Aligned_cols=50 Identities=16% Similarity=0.103 Sum_probs=32.7
Q ss_pred cccccccccEEEEEEeCCChhhhhhHHHHHHHHhhhcCCCCEEEEEeCCCCC
Q 030504 79 RDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVK 130 (176)
Q Consensus 79 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~ 130 (176)
-+...+++|.+|.|+|++.. ++..+....+...+. .-.++.+|+||.|-.
T Consensus 149 gRg~~~~vD~vivVvDpS~~-sl~taeri~~L~~el-g~k~i~~V~NKv~e~ 198 (255)
T COG3640 149 GRGTIEGVDLVIVVVDPSYK-SLRTAERIKELAEEL-GIKRIFVVLNKVDEE 198 (255)
T ss_pred ccccccCCCEEEEEeCCcHH-HHHHHHHHHHHHHHh-CCceEEEEEeeccch
Confidence 34446678999999998843 344443332222333 238999999999865
|
|
| >KOG0469 consensus Elongation factor 2 [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.95 E-value=7.6e-06 Score=61.19 Aligned_cols=116 Identities=14% Similarity=0.194 Sum_probs=78.4
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHhcC------------CCCCc--cccceeEEEeEEEE----------------EecCcE
Q 030504 12 PSFKLVIVGDGGTGKTTFVKRHLTG------------EFEKK--YEPTIGVEVHPLDF----------------FTNCGK 61 (176)
Q Consensus 12 ~~~~i~i~G~~~~GKttl~~~~~~~------------~~~~~--~~~~~~~~~~~~~~----------------~~~~~~ 61 (176)
+..++.++-+...|||||...+... +|... -....|++..+..+ ..+..+
T Consensus 18 NiRNmSVIAHVDHGKSTLTDsLV~kAgIis~akaGe~Rf~DtRkDEQeR~iTIKStAISl~~e~~~~dl~~~k~~~d~~~ 97 (842)
T KOG0469|consen 18 NIRNMSVIAHVDHGKSTLTDSLVQKAGIISAAKAGETRFTDTRKDEQERGITIKSTAISLFFEMSDDDLKFIKQEGDGNG 97 (842)
T ss_pred ccccceEEEEecCCcchhhHHHHHhhceeeecccCCccccccccchhhcceEeeeeeeeehhhhhHhHHHHhcCCCCCcc
Confidence 4567889999999999999987541 11110 00112223222211 123346
Q ss_pred EEEEEEeCCCccccccccccccccccEEEEEEeCCChhhhhhHHHHHHHHhhhcCCCCEEEEEeCCCCC
Q 030504 62 IRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVK 130 (176)
Q Consensus 62 ~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~ 130 (176)
+-+.++|.|||-.|.+..-+.++-.|+++.|+|.-+.--.+.-..+.+.+.++ -+|+ +++||.|..
T Consensus 98 FLiNLIDSPGHVDFSSEVTAALRVTDGALVVVDcv~GvCVQTETVLrQA~~ER--IkPv-lv~NK~DRA 163 (842)
T KOG0469|consen 98 FLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTETVLRQAIAER--IKPV-LVMNKMDRA 163 (842)
T ss_pred eeEEeccCCCcccchhhhhheeEeccCcEEEEEccCceEechHHHHHHHHHhh--ccce-EEeehhhHH
Confidence 78899999999999999999999999999999998876555544455555554 4454 567999954
|
|
| >cd03114 ArgK-like The function of this protein family is unkown | Back alignment and domain information |
|---|
Probab=97.95 E-value=4e-05 Score=49.08 Aligned_cols=58 Identities=12% Similarity=0.117 Sum_probs=33.9
Q ss_pred EEEEEEEeCCCccccccccccccccccEEEEEEeCCChhhhhhHHHHHHHHhhhcCCCCEEEEEeCCC
Q 030504 61 KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVD 128 (176)
Q Consensus 61 ~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~liv~nK~D 128 (176)
.+.+.++||+|... . ...++..+|-++++..+.-.+.+.-... ..+ ..--+++.||.|
T Consensus 91 ~~D~iiIDtaG~~~--~-~~~~~~~Ad~~ivv~tpe~~D~y~~~k~--~~~-----~~~~~~~~~k~~ 148 (148)
T cd03114 91 GFDVIIVETVGVGQ--S-EVDIASMADTTVVVMAPGAGDDIQAIKA--GIM-----EIADIVVVNKAD 148 (148)
T ss_pred CCCEEEEECCccCh--h-hhhHHHhCCEEEEEECCCchhHHHHhhh--hHh-----hhcCEEEEeCCC
Confidence 46788899988542 2 2347788898998888772222111110 111 223466779987
|
The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems. |
| >KOG1424 consensus Predicted GTP-binding protein MMR1 [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.95 E-value=2.3e-05 Score=58.64 Aligned_cols=58 Identities=17% Similarity=0.139 Sum_probs=42.3
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCcc
Q 030504 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73 (176)
Q Consensus 12 ~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~ 73 (176)
..+.|.+||-|+|||||+||.+.+++-. ..+.|.|-|..-.++.++. .+.++|+||.-
T Consensus 313 ~~vtVG~VGYPNVGKSSTINaLvG~KkV-sVS~TPGkTKHFQTi~ls~---~v~LCDCPGLV 370 (562)
T KOG1424|consen 313 DVVTVGFVGYPNVGKSSTINALVGRKKV-SVSSTPGKTKHFQTIFLSP---SVCLCDCPGLV 370 (562)
T ss_pred ceeEEEeecCCCCchhHHHHHHhcCcee-eeecCCCCcceeEEEEcCC---CceecCCCCcc
Confidence 4689999999999999999996655543 4466777665555554432 35788999954
|
|
| >PRK11537 putative GTP-binding protein YjiA; Provisional | Back alignment and domain information |
|---|
Probab=97.93 E-value=0.0001 Score=53.19 Aligned_cols=84 Identities=12% Similarity=0.084 Sum_probs=43.3
Q ss_pred EEEEEEeCCCcccccccccccc--------ccccEEEEEEeCCChhhhh-hHHHHHHHHhhhcCCCCEEEEEeCCCCCcc
Q 030504 62 IRFYCWDTAGQEKFGGLRDGYY--------IHGQCAIIMFDVTARLTYK-NVPTWHRDLCRVCENIPIVLCGNKVDVKNR 132 (176)
Q Consensus 62 ~~~~~~D~~g~~~~~~~~~~~~--------~~~~~~i~v~d~~~~~s~~-~~~~~~~~~~~~~~~~p~liv~nK~Dl~~~ 132 (176)
....++++.|..........++ -..++++.|+|+.+..... .......++ ..-=++++||+|+...
T Consensus 91 ~d~IvIEttG~a~p~~i~~~~~~~~~l~~~~~l~~vvtvvDa~~~~~~~~~~~~~~~Qi-----~~AD~IvlnK~Dl~~~ 165 (318)
T PRK11537 91 FDRLVIECTGMADPGPIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQMNQFTIAQSQV-----GYADRILLTKTDVAGE 165 (318)
T ss_pred CCEEEEECCCccCHHHHHHHHhcChhhcccEEeccEEEEEEhhhhhhhccccHHHHHHH-----HhCCEEEEeccccCCH
Confidence 4456778888654332222221 1358899999997543211 111111222 2233677899999864
Q ss_pred ccCHHHHHHHHHcC--CeEEEe
Q 030504 133 QVKAKQVTFHRKKN--LQYYEI 152 (176)
Q Consensus 133 ~~~~~~~~~~~~~~--~~~~~~ 152 (176)
. .......+..+ ++++.+
T Consensus 166 ~--~~~~~~l~~lnp~a~i~~~ 185 (318)
T PRK11537 166 A--EKLRERLARINARAPVYTV 185 (318)
T ss_pred H--HHHHHHHHHhCCCCEEEEe
Confidence 3 33444444433 455544
|
|
| >KOG2485 consensus Conserved ATP/GTP binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.92 E-value=1.3e-05 Score=56.35 Aligned_cols=61 Identities=16% Similarity=0.263 Sum_probs=40.7
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHhcCCCC----CccccceeEEEeEEE-EEecCcEEEEEEEeCCCc
Q 030504 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFE----KKYEPTIGVEVHPLD-FFTNCGKIRFYCWDTAGQ 72 (176)
Q Consensus 11 ~~~~~i~i~G~~~~GKttl~~~~~~~~~~----~~~~~~~~~~~~~~~-~~~~~~~~~~~~~D~~g~ 72 (176)
..++++.|+|.||+|||||+|........ ....+..|++..... +.+.+.. .+.+.||||.
T Consensus 141 ~~~~~vmVvGvPNVGKSsLINa~r~~~Lrk~k~a~vG~~pGVT~~V~~~iri~~rp-~vy~iDTPGi 206 (335)
T KOG2485|consen 141 NSEYNVMVVGVPNVGKSSLINALRNVHLRKKKAARVGAEPGVTRRVSERIRISHRP-PVYLIDTPGI 206 (335)
T ss_pred CCceeEEEEcCCCCChHHHHHHHHHHHhhhccceeccCCCCceeeehhheEeccCC-ceEEecCCCc
Confidence 46899999999999999999986543221 122334455665554 4444333 3778999994
|
|
| >PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A | Back alignment and domain information |
|---|
Probab=97.85 E-value=1.5e-05 Score=49.12 Aligned_cols=21 Identities=33% Similarity=0.570 Sum_probs=18.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 030504 15 KLVIVGDGGTGKTTFVKRHLT 35 (176)
Q Consensus 15 ~i~i~G~~~~GKttl~~~~~~ 35 (176)
.|+|.|++||||||+.+.+..
T Consensus 1 vI~I~G~~gsGKST~a~~La~ 21 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAE 21 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999998653
|
... |
| >PRK08118 topology modulation protein; Reviewed | Back alignment and domain information |
|---|
Probab=97.84 E-value=1.5e-05 Score=52.09 Aligned_cols=21 Identities=33% Similarity=0.801 Sum_probs=19.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 030504 15 KLVIVGDGGTGKTTFVKRHLT 35 (176)
Q Consensus 15 ~i~i~G~~~~GKttl~~~~~~ 35 (176)
||+|+|++|||||||..++..
T Consensus 3 rI~I~G~~GsGKSTlak~L~~ 23 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGE 23 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 799999999999999998653
|
|
| >COG3523 IcmF Type VI protein secretion system component VasK [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.82 E-value=3.2e-05 Score=63.84 Aligned_cols=110 Identities=20% Similarity=0.130 Sum_probs=61.3
Q ss_pred EEEEcCCCCcHHHHHHHHhcCCCCCc------cccceeEEEeEEEEEecCcEEEEEEEeCCCccc--------ccccccc
Q 030504 16 LVIVGDGGTGKTTFVKRHLTGEFEKK------YEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK--------FGGLRDG 81 (176)
Q Consensus 16 i~i~G~~~~GKttl~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~--------~~~~~~~ 81 (176)
.+|+|++|+||||++.. .+-.|+-. .....| |..+-.. + +=.-.++||.|... ....|..
T Consensus 128 y~viG~pgsGKTtal~~-sgl~Fpl~~~~~~~~~~~~g-T~~cdww-f---~deaVlIDtaGry~~q~s~~~~~~~~W~~ 201 (1188)
T COG3523 128 YMVIGPPGSGKTTALLN-SGLQFPLAEQMGALGLAGPG-TRNCDWW-F---TDEAVLIDTAGRYITQDSADEVDRAEWLG 201 (1188)
T ss_pred eEEecCCCCCcchHHhc-ccccCcchhhhccccccCCC-CcccCcc-c---ccceEEEcCCcceecccCcchhhHHHHHH
Confidence 57899999999999886 54444311 011111 1222111 1 11345789988322 2233443
Q ss_pred c---------cccccEEEEEEeCCChhhhhh---------HHHHHHHHhhhc-CCCCEEEEEeCCCCCc
Q 030504 82 Y---------YIHGQCAIIMFDVTARLTYKN---------VPTWHRDLCRVC-ENIPIVLCGNKVDVKN 131 (176)
Q Consensus 82 ~---------~~~~~~~i~v~d~~~~~s~~~---------~~~~~~~~~~~~-~~~p~liv~nK~Dl~~ 131 (176)
+ .+..+++|+.+|+.+--+-.. +..-+..+.+.. -..|+++++||.|+..
T Consensus 202 fL~lLkk~R~~~piNGiiltlsv~~L~~~~~~~~~~~~~~LR~RL~El~~tL~~~~PVYl~lTk~Dll~ 270 (1188)
T COG3523 202 FLGLLKKYRRRRPLNGIILTLSVSDLLTADPAEREALARTLRARLQELRETLHARLPVYLVLTKADLLP 270 (1188)
T ss_pred HHHHHHHhccCCCCceEEEEEEHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhccCCceEEEEecccccc
Confidence 3 235799999999885322111 111122222222 3899999999999875
|
|
| >COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.80 E-value=1.8e-05 Score=52.19 Aligned_cols=23 Identities=30% Similarity=0.637 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcC
Q 030504 14 FKLVIVGDGGTGKTTFVKRHLTG 36 (176)
Q Consensus 14 ~~i~i~G~~~~GKttl~~~~~~~ 36 (176)
.||+|+|+|||||||+..++...
T Consensus 1 ~riiilG~pGaGK~T~A~~La~~ 23 (178)
T COG0563 1 MRILILGPPGAGKSTLAKKLAKK 23 (178)
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 37999999999999999986644
|
|
| >PRK07261 topology modulation protein; Provisional | Back alignment and domain information |
|---|
Probab=97.79 E-value=2.1e-05 Score=51.62 Aligned_cols=20 Identities=35% Similarity=0.713 Sum_probs=18.5
Q ss_pred EEEEEcCCCCcHHHHHHHHh
Q 030504 15 KLVIVGDGGTGKTTFVKRHL 34 (176)
Q Consensus 15 ~i~i~G~~~~GKttl~~~~~ 34 (176)
||+|+|++|+|||||...+.
T Consensus 2 ri~i~G~~GsGKSTla~~l~ 21 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLS 21 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHH
Confidence 79999999999999999854
|
|
| >PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.0003 Score=49.50 Aligned_cols=93 Identities=9% Similarity=0.048 Sum_probs=53.2
Q ss_pred EEEEEEEeCCCcccccc-c---ccccc--ccccEEEEEEeCCChhhhhhHHHHHHHHhhhcCCCCEEEEEeCCCCCcccc
Q 030504 61 KIRFYCWDTAGQEKFGG-L---RDGYY--IHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQV 134 (176)
Q Consensus 61 ~~~~~~~D~~g~~~~~~-~---~~~~~--~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~~~~~ 134 (176)
.+.+.++||+|...... . ...++ ...+-.++|+|++... +.+..++..+.. -.+--++.||.|-...
T Consensus 154 ~~D~ViIDt~Gr~~~~~~~l~el~~~~~~~~~~~~~LVl~a~~~~--~d~~~~~~~f~~---~~~~~~I~TKlDet~~-- 226 (270)
T PRK06731 154 RVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKS--KDMIEIITNFKD---IHIDGIVFTKFDETAS-- 226 (270)
T ss_pred CCCEEEEECCCCCcCCHHHHHHHHHHHhhhCCCeEEEEEcCccCH--HHHHHHHHHhCC---CCCCEEEEEeecCCCC--
Confidence 46788999999653221 1 11111 2346788899987432 223333333322 2233566899998663
Q ss_pred CHHHHHHHHHcCCeEEEeccCCCCChHH
Q 030504 135 KAKQVTFHRKKNLQYYEISAKSNYNFEK 162 (176)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~S~~~~~~v~~ 162 (176)
.-...+++...+.|+..++ +|+++.+
T Consensus 227 ~G~~l~~~~~~~~Pi~~it--~Gq~vp~ 252 (270)
T PRK06731 227 SGELLKIPAVSSAPIVLMT--DGQDVKK 252 (270)
T ss_pred ccHHHHHHHHHCcCEEEEe--CCCCCCc
Confidence 3355677777787777663 5566543
|
|
| >COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion] | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.00033 Score=51.51 Aligned_cols=140 Identities=14% Similarity=0.163 Sum_probs=71.6
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCCCCCcccccee-EEEeEEEE-----------------Ee------------cCcEE
Q 030504 13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIG-VEVHPLDF-----------------FT------------NCGKI 62 (176)
Q Consensus 13 ~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~-~~~~~~~~-----------------~~------------~~~~~ 62 (176)
.-.|+++|+.||||||-+..+.....-.......| ++.+++.+ .+ .-..+
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~vv~~~~el~~ai~~l~~~ 282 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAVEQLKTYADIMGVPLEVVYSPKELAEAIEALRDC 282 (407)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhhHHHHHHHHHHHhCCceEEecCHHHHHHHHHHhhcC
Confidence 56799999999999998777433221011111111 11121111 00 01234
Q ss_pred EEEEEeCCCccccccc----cccccc--cccEEEEEEeCCChhhhhhHHHHHHHHhhhcCCCCE-EEEEeCCCCCccccC
Q 030504 63 RFYCWDTAGQEKFGGL----RDGYYI--HGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI-VLCGNKVDVKNRQVK 135 (176)
Q Consensus 63 ~~~~~D~~g~~~~~~~----~~~~~~--~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~-liv~nK~Dl~~~~~~ 135 (176)
.+.++||.|...+... ...++. ...-+.+|++++... +.+...+..+. ..|+ -++.||.|-... .
T Consensus 283 d~ILVDTaGrs~~D~~~i~el~~~~~~~~~i~~~Lvlsat~K~--~dlkei~~~f~----~~~i~~~I~TKlDET~s--~ 354 (407)
T COG1419 283 DVILVDTAGRSQYDKEKIEELKELIDVSHSIEVYLVLSATTKY--EDLKEIIKQFS----LFPIDGLIFTKLDETTS--L 354 (407)
T ss_pred CEEEEeCCCCCccCHHHHHHHHHHHhccccceEEEEEecCcch--HHHHHHHHHhc----cCCcceeEEEcccccCc--h
Confidence 6889999997654322 222222 234455667766443 23333333332 3332 455799986542 2
Q ss_pred HHHHHHHHHcCCeEEEeccCCCCChHH
Q 030504 136 AKQVTFHRKKNLQYYEISAKSNYNFEK 162 (176)
Q Consensus 136 ~~~~~~~~~~~~~~~~~S~~~~~~v~~ 162 (176)
-....+..+.+.++-.+ .+|++|.+
T Consensus 355 G~~~s~~~e~~~PV~Yv--T~GQ~VPe 379 (407)
T COG1419 355 GNLFSLMYETRLPVSYV--TNGQRVPE 379 (407)
T ss_pred hHHHHHHHHhCCCeEEE--eCCCCCCc
Confidence 34556666666666555 35565543
|
|
| >PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated | Back alignment and domain information |
|---|
Probab=97.76 E-value=6.5e-05 Score=56.87 Aligned_cols=90 Identities=8% Similarity=-0.059 Sum_probs=47.9
Q ss_pred EEEEEEeCCCcccccc---cccccccc---ccEEEEEEeCCChhhhhhHHHHHHHHhhhcCCCCEEEEEeCCCCCccccC
Q 030504 62 IRFYCWDTAGQEKFGG---LRDGYYIH---GQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVK 135 (176)
Q Consensus 62 ~~~~~~D~~g~~~~~~---~~~~~~~~---~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~~~~~~ 135 (176)
..+.++||+|...... .....+.. ..-.++|+|.+... ..+.+....+.. ...--+|+||.|-.. ..
T Consensus 335 ~d~VLIDTaGr~~~d~~~~e~~~~l~~~~~p~e~~LVLdAt~~~--~~l~~i~~~f~~---~~~~g~IlTKlDet~--~~ 407 (484)
T PRK06995 335 KHIVLIDTIGMSQRDRMVSEQIAMLHGAGAPVKRLLLLNATSHG--DTLNEVVQAYRG---PGLAGCILTKLDEAA--SL 407 (484)
T ss_pred CCeEEeCCCCcChhhHHHHHHHHHHhccCCCCeeEEEEeCCCcH--HHHHHHHHHhcc---CCCCEEEEeCCCCcc--cc
Confidence 3578899999443221 00111111 22367888887443 222222222221 223456689998754 23
Q ss_pred HHHHHHHHHcCCeEEEeccCCCCCh
Q 030504 136 AKQVTFHRKKNLQYYEISAKSNYNF 160 (176)
Q Consensus 136 ~~~~~~~~~~~~~~~~~S~~~~~~v 160 (176)
-.........++++.++ -+|++|
T Consensus 408 G~~l~i~~~~~lPI~yv--t~GQ~V 430 (484)
T PRK06995 408 GGALDVVIRYKLPLHYV--SNGQRV 430 (484)
T ss_pred hHHHHHHHHHCCCeEEE--ecCCCC
Confidence 35567777778887776 456666
|
|
| >PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.00027 Score=56.28 Aligned_cols=92 Identities=10% Similarity=-0.015 Sum_probs=50.8
Q ss_pred EEEEEEeCCCcccccc-cc---ccc--cccccEEEEEEeCCCh-hhhhhHHHHHHHHhhhcCCCCEEEEEeCCCCCcccc
Q 030504 62 IRFYCWDTAGQEKFGG-LR---DGY--YIHGQCAIIMFDVTAR-LTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQV 134 (176)
Q Consensus 62 ~~~~~~D~~g~~~~~~-~~---~~~--~~~~~~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~~~~~ 134 (176)
+.+.++||+|...... .. ... ....+-.++|+|++.. ..+.++.+ .+.....-.+-=+|+||.|-...
T Consensus 264 ~D~VLIDTAGRs~~d~~l~eel~~l~~~~~p~e~~LVLsAt~~~~~l~~i~~---~f~~~~~~~i~glIlTKLDEt~~-- 338 (767)
T PRK14723 264 KHLVLIDTVGMSQRDRNVSEQIAMLCGVGRPVRRLLLLNAASHGDTLNEVVH---AYRHGAGEDVDGCIITKLDEATH-- 338 (767)
T ss_pred CCEEEEeCCCCCccCHHHHHHHHHHhccCCCCeEEEEECCCCcHHHHHHHHH---HHhhcccCCCCEEEEeccCCCCC--
Confidence 4688999999443211 11 110 1234667889998753 33333332 22221111234566899997653
Q ss_pred CHHHHHHHHHcCCeEEEeccCCCCCh
Q 030504 135 KAKQVTFHRKKNLQYYEISAKSNYNF 160 (176)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~S~~~~~~v 160 (176)
.-...++....++++..++ +|++|
T Consensus 339 ~G~iL~i~~~~~lPI~yit--~GQ~V 362 (767)
T PRK14723 339 LGPALDTVIRHRLPVHYVS--TGQKV 362 (767)
T ss_pred ccHHHHHHHHHCCCeEEEe--cCCCC
Confidence 3345677777788777763 56666
|
|
| >PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B | Back alignment and domain information |
|---|
Probab=97.73 E-value=2.7e-05 Score=49.39 Aligned_cols=19 Identities=37% Similarity=0.733 Sum_probs=17.6
Q ss_pred EEEEcCCCCcHHHHHHHHh
Q 030504 16 LVIVGDGGTGKTTFVKRHL 34 (176)
Q Consensus 16 i~i~G~~~~GKttl~~~~~ 34 (176)
|+++|++||||||++.++.
T Consensus 2 ii~~G~pgsGKSt~a~~l~ 20 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLA 20 (143)
T ss_dssp EEEEESTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 7899999999999999965
|
... |
| >PRK14738 gmk guanylate kinase; Provisional | Back alignment and domain information |
|---|
Probab=97.73 E-value=6e-05 Score=51.05 Aligned_cols=28 Identities=25% Similarity=0.355 Sum_probs=23.0
Q ss_pred CCCCCeeEEEEEcCCCCcHHHHHHHHhc
Q 030504 8 TVDYPSFKLVIVGDGGTGKTTFVKRHLT 35 (176)
Q Consensus 8 ~~~~~~~~i~i~G~~~~GKttl~~~~~~ 35 (176)
+.+....-|+|+|++|||||||++++..
T Consensus 8 ~~~~~~~~ivi~GpsG~GK~tl~~~L~~ 35 (206)
T PRK14738 8 NKPAKPLLVVISGPSGVGKDAVLARMRE 35 (206)
T ss_pred CCCCCCeEEEEECcCCCCHHHHHHHHHh
Confidence 4455667789999999999999999754
|
|
| >COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.71 E-value=3.2e-05 Score=50.68 Aligned_cols=24 Identities=38% Similarity=0.659 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCC
Q 030504 14 FKLVIVGDGGTGKTTFVKRHLTGE 37 (176)
Q Consensus 14 ~~i~i~G~~~~GKttl~~~~~~~~ 37 (176)
.=+++.|++|+|||||+++++...
T Consensus 5 ~l~vlsgPSG~GKsTl~k~L~~~~ 28 (191)
T COG0194 5 LLIVLSGPSGVGKSTLVKALLEDD 28 (191)
T ss_pred eEEEEECCCCCCHHHHHHHHHhhc
Confidence 347899999999999999977554
|
|
| >cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.00021 Score=43.05 Aligned_cols=102 Identities=13% Similarity=0.064 Sum_probs=55.8
Q ss_pred EEEEcC-CCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccccccccccEEEEEEe
Q 030504 16 LVIVGD-GGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFD 94 (176)
Q Consensus 16 i~i~G~-~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d 94 (176)
|+++|. .|+||||+...+...-.......+.-.+.+.. ....+.++|+|+... ......+..+|.++++.+
T Consensus 2 i~~~~~kgg~gkt~~~~~la~~~~~~~~~~~~l~d~d~~------~~~D~IIiDtpp~~~--~~~~~~l~~aD~vlvvv~ 73 (106)
T cd03111 2 IAFIGAKGGVGATTLAANLAVALAKEAGRRVLLVDLDLQ------FGDDYVVVDLGRSLD--EVSLAALDQADRVFLVTQ 73 (106)
T ss_pred EEEECCCCCCcHHHHHHHHHHHHHhcCCCcEEEEECCCC------CCCCEEEEeCCCCcC--HHHHHHHHHcCeEEEEec
Confidence 455554 47999998776432111110111211111111 111688999998543 233446678899999988
Q ss_pred CCChhhhhhHHHHHHHHhhhc-C-CCCEEEEEeC
Q 030504 95 VTARLTYKNVPTWHRDLCRVC-E-NIPIVLCGNK 126 (176)
Q Consensus 95 ~~~~~s~~~~~~~~~~~~~~~-~-~~p~liv~nK 126 (176)
.+ ..+...+..+++.+.+.. + ..++.+|+|+
T Consensus 74 ~~-~~s~~~~~~~~~~l~~~~~~~~~~~~lVvNr 106 (106)
T cd03111 74 QD-LPSIRNAKRLLELLRVLDYSLPAKIELVLNR 106 (106)
T ss_pred CC-hHHHHHHHHHHHHHHHcCCCCcCceEEEecC
Confidence 65 444555555555554432 2 3456677775
|
The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome. |
| >KOG1534 consensus Putative transcription factor FET5 [Transcription] | Back alignment and domain information |
|---|
Probab=97.70 E-value=4.9e-05 Score=50.77 Aligned_cols=24 Identities=21% Similarity=0.541 Sum_probs=20.4
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHhc
Q 030504 12 PSFKLVIVGDGGTGKTTFVKRHLT 35 (176)
Q Consensus 12 ~~~~i~i~G~~~~GKttl~~~~~~ 35 (176)
..+-.+++|+.||||||+.+.+..
T Consensus 2 m~ya~lV~GpAgSGKSTyC~~~~~ 25 (273)
T KOG1534|consen 2 MRYAQLVMGPAGSGKSTYCSSMYE 25 (273)
T ss_pred CceeEEEEccCCCCcchHHHHHHH
Confidence 457889999999999999988653
|
|
| >KOG2484 consensus GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.69 E-value=4.2e-05 Score=55.59 Aligned_cols=58 Identities=16% Similarity=0.158 Sum_probs=43.2
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCc
Q 030504 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQ 72 (176)
Q Consensus 11 ~~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~ 72 (176)
++.+++.|+|-|++||||+||++...+. ....++.|+|..-..+..+. .+.+.|.||.
T Consensus 250 k~sIrvGViG~PNVGKSSvINsL~~~k~-C~vg~~pGvT~smqeV~Ldk---~i~llDsPgi 307 (435)
T KOG2484|consen 250 KTSIRVGIIGYPNVGKSSVINSLKRRKA-CNVGNVPGVTRSMQEVKLDK---KIRLLDSPGI 307 (435)
T ss_pred CcceEeeeecCCCCChhHHHHHHHHhcc-ccCCCCccchhhhhheeccC---CceeccCCce
Confidence 5789999999999999999999776554 34455666666655554442 4678899994
|
|
| >PF13521 AAA_28: AAA domain; PDB: 1LW7_A | Back alignment and domain information |
|---|
Probab=97.68 E-value=2.7e-05 Score=50.70 Aligned_cols=22 Identities=36% Similarity=0.575 Sum_probs=16.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 030504 15 KLVIVGDGGTGKTTFVKRHLTG 36 (176)
Q Consensus 15 ~i~i~G~~~~GKttl~~~~~~~ 36 (176)
||+|+|.+++|||||++.+...
T Consensus 1 rI~i~G~~stGKTTL~~~L~~~ 22 (163)
T PF13521_consen 1 RIVITGGPSTGKTTLIEALAAR 22 (163)
T ss_dssp -EEEE--TTSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHc
Confidence 7999999999999999997643
|
|
| >PF13555 AAA_29: P-loop containing region of AAA domain | Back alignment and domain information |
|---|
Probab=97.66 E-value=5.4e-05 Score=40.60 Aligned_cols=20 Identities=30% Similarity=0.516 Sum_probs=17.9
Q ss_pred EEEEEcCCCCcHHHHHHHHh
Q 030504 15 KLVIVGDGGTGKTTFVKRHL 34 (176)
Q Consensus 15 ~i~i~G~~~~GKttl~~~~~ 34 (176)
..+|.|+.|+|||||+.++.
T Consensus 25 ~tli~G~nGsGKSTllDAi~ 44 (62)
T PF13555_consen 25 VTLITGPNGSGKSTLLDAIQ 44 (62)
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 48999999999999998854
|
|
| >cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.00033 Score=41.89 Aligned_cols=82 Identities=13% Similarity=0.186 Sum_probs=48.3
Q ss_pred EEEEcC-CCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccccccccccEEEEEEe
Q 030504 16 LVIVGD-GGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFD 94 (176)
Q Consensus 16 i~i~G~-~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d 94 (176)
|++.|. .|+||||+...+... +.....++.-.+ .+ ..+.+.++|+|+... ......+..+|.++++.+
T Consensus 2 i~~~~~kgG~Gkst~~~~la~~-~~~~~~~vl~~d-------~d-~~~d~viiD~p~~~~--~~~~~~l~~ad~viv~~~ 70 (104)
T cd02042 2 IAVANQKGGVGKTTTAVNLAAA-LARRGKRVLLID-------LD-PQYDYIIIDTPPSLG--LLTRNALAAADLVLIPVQ 70 (104)
T ss_pred EEEEeCCCCcCHHHHHHHHHHH-HHhCCCcEEEEe-------CC-CCCCEEEEeCcCCCC--HHHHHHHHHCCEEEEecc
Confidence 567774 489999998764322 111111222111 11 126788999998643 223366778999999998
Q ss_pred CCChhhhhhHHHHHH
Q 030504 95 VTARLTYKNVPTWHR 109 (176)
Q Consensus 95 ~~~~~s~~~~~~~~~ 109 (176)
.+ ..++..+..+++
T Consensus 71 ~~-~~s~~~~~~~~~ 84 (104)
T cd02042 71 PS-PLDLDGLEKLLE 84 (104)
T ss_pred CC-HHHHHHHHHHHH
Confidence 75 445555554444
|
ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition. |
| >PF11111 CENP-M: Centromere protein M (CENP-M); InterPro: IPR020987 The prime candidate for specifying centromere identity is the array of nucleosomes assembles associated with CENP-A [] | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.0062 Score=39.65 Aligned_cols=141 Identities=6% Similarity=-0.019 Sum_probs=92.7
Q ss_pred CCCCCeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCcccccccccccccccc
Q 030504 8 TVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQ 87 (176)
Q Consensus 8 ~~~~~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~ 87 (176)
-+....-.|+++|..+.++..|...++.... . +....... .-.-.|. + ....=...|
T Consensus 10 lp~ln~atiLLVg~e~~~~~~LA~a~l~~~~--~------~~l~Vh~a---------~sLPLp~--e----~~~lRprID 66 (176)
T PF11111_consen 10 LPELNTATILLVGTEEALLQQLAEAMLEEDK--E------FKLKVHLA---------KSLPLPS--E----NNNLRPRID 66 (176)
T ss_pred CCCcceeEEEEecccHHHHHHHHHHHHhhcc--c------eeEEEEEe---------ccCCCcc--c----ccCCCceeE
Confidence 3455678899999999999999999774111 0 01111110 0011111 1 111124679
Q ss_pred EEEEEEeCCChhhhhhHHHHHHHHhhhcCCCCEEEEEeCCCCCc--cccCHHHHHHHHHcCCeEEEeccCCCCChHHHHH
Q 030504 88 CAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKN--RQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFL 165 (176)
Q Consensus 88 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~ 165 (176)
.++|++|.....+++.++.-+..+...+.--.+.++++-..... .....+..+++..+.++++.+.-...++...+-+
T Consensus 67 lIVFvinl~sk~SL~~ve~SL~~vd~~fflGKVCfl~t~a~~~~~~sv~~~~V~kla~~y~~plL~~~le~~~~~~~lAq 146 (176)
T PF11111_consen 67 LIVFVINLHSKYSLQSVEASLSHVDPSFFLGKVCFLATNAGRESHCSVHPNEVRKLAATYNSPLLFADLENEEGRTSLAQ 146 (176)
T ss_pred EEEEEEecCCcccHHHHHHHHhhCChhhhccceEEEEcCCCcccccccCHHHHHHHHHHhCCCEEEeecccchHHHHHHH
Confidence 99999999999999999887777765543445666666665544 3334567799999999999999888887766666
Q ss_pred HHHHHH
Q 030504 166 YLARKL 171 (176)
Q Consensus 166 ~l~~~i 171 (176)
.|.+.+
T Consensus 147 RLL~~l 152 (176)
T PF11111_consen 147 RLLRML 152 (176)
T ss_pred HHHHHH
Confidence 665544
|
CENP-A recruits a nucleosome associated complex (CENP-A-NAC complex) comprised of CENP-M which this entry represents, along with two other proteins []. Assembly of the CENP-A NAC at centromeres is partly dependent on CENP-M. The CENP-A NAC is essential, as disruption of the complex causes errors of chromosome alignment and segregation that preclude cell survival []. |
| >COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.64 E-value=4.4e-05 Score=51.27 Aligned_cols=21 Identities=33% Similarity=0.589 Sum_probs=18.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 030504 15 KLVIVGDGGTGKTTFVKRHLT 35 (176)
Q Consensus 15 ~i~i~G~~~~GKttl~~~~~~ 35 (176)
.++|+|++|||||||++++..
T Consensus 30 vv~iiGpSGSGKSTlLRclN~ 50 (240)
T COG1126 30 VVVIIGPSGSGKSTLLRCLNG 50 (240)
T ss_pred EEEEECCCCCCHHHHHHHHHC
Confidence 589999999999999998443
|
|
| >cd04178 Nucleostemin_like Nucleostemin-like | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.00035 Score=45.95 Aligned_cols=59 Identities=19% Similarity=0.271 Sum_probs=34.7
Q ss_pred cEEEEEEeCCChhhhhhHHHHHHHHhhhcCCCCEEEEEeCCCCCccccCHHHHHHHHHcC
Q 030504 87 QCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKN 146 (176)
Q Consensus 87 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~~~~~~~~~~~~~~~~~ 146 (176)
|++++|+|+.++.+... ..+.+.+.-...+.|+++|+||+|+.+.....+..+.+++..
T Consensus 1 DvVl~VvDar~p~~~~~-~~i~~~~~l~~~~kp~IlVlNK~DL~~~~~l~~~~~~~~~~~ 59 (172)
T cd04178 1 DVILEVLDARDPLGCRC-PQVEEAVLQAGGNKKLVLVLNKIDLVPKENVEKWLKYLRREF 59 (172)
T ss_pred CEEEEEEECCCCCCCCC-HHHHHHHHhccCCCCEEEEEehhhcCCHHHHHHHHHHHHhhC
Confidence 78999999988643221 122222111113789999999999976444333444444433
|
Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the |
| >PLN02200 adenylate kinase family protein | Back alignment and domain information |
|---|
Probab=97.62 E-value=9.3e-05 Score=51.10 Aligned_cols=26 Identities=23% Similarity=0.449 Sum_probs=21.5
Q ss_pred CCCeeEEEEEcCCCCcHHHHHHHHhc
Q 030504 10 DYPSFKLVIVGDGGTGKTTFVKRHLT 35 (176)
Q Consensus 10 ~~~~~~i~i~G~~~~GKttl~~~~~~ 35 (176)
...++.|+|+|+|||||||+..++..
T Consensus 40 ~~~~~ii~I~G~PGSGKsT~a~~La~ 65 (234)
T PLN02200 40 EKTPFITFVLGGPGSGKGTQCEKIVE 65 (234)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHH
Confidence 34567899999999999999988653
|
|
| >cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars | Back alignment and domain information |
|---|
Probab=97.62 E-value=6.2e-05 Score=41.61 Aligned_cols=19 Identities=37% Similarity=0.683 Sum_probs=17.2
Q ss_pred EEEEcCCCCcHHHHHHHHh
Q 030504 16 LVIVGDGGTGKTTFVKRHL 34 (176)
Q Consensus 16 i~i~G~~~~GKttl~~~~~ 34 (176)
|++.|.+|+||||+.+.+.
T Consensus 2 i~i~G~~gsGKst~~~~l~ 20 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLA 20 (69)
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 7889999999999999855
|
Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate. |
| >cd03110 Fer4_NifH_child This protein family's function is unkown | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.00054 Score=45.26 Aligned_cols=86 Identities=9% Similarity=0.079 Sum_probs=59.1
Q ss_pred cEEEEEEEeCCCccccccccccccccccEEEEEEeCCChhhhhhHHHHHHHHhhhcCCCCEEEEEeCCCCCccccCHHHH
Q 030504 60 GKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQV 139 (176)
Q Consensus 60 ~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~~~~~~~~~~ 139 (176)
..+.+.++|+|+... ......+..+|.+++++.++.. +...+..+++.+.+. +.|+.+|+||.|.... ...+..
T Consensus 91 ~~~d~viiDtpp~~~--~~~~~~l~~aD~vliv~~~~~~-~~~~~~~~~~~l~~~--~~~~~vV~N~~~~~~~-~~~~~~ 164 (179)
T cd03110 91 EGAELIIIDGPPGIG--CPVIASLTGADAALLVTEPTPS-GLHDLERAVELVRHF--GIPVGVVINKYDLNDE-IAEEIE 164 (179)
T ss_pred cCCCEEEEECcCCCc--HHHHHHHHcCCEEEEEecCCcc-cHHHHHHHHHHHHHc--CCCEEEEEeCCCCCcc-hHHHHH
Confidence 456889999996542 2334456789999999998743 455555555555544 6788999999997643 334556
Q ss_pred HHHHHcCCeEEE
Q 030504 140 TFHRKKNLQYYE 151 (176)
Q Consensus 140 ~~~~~~~~~~~~ 151 (176)
++++..+++++.
T Consensus 165 ~~~~~~~~~vl~ 176 (179)
T cd03110 165 DYCEEEGIPILG 176 (179)
T ss_pred HHHHHcCCCeEE
Confidence 777777887664
|
It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion. |
| >PRK14737 gmk guanylate kinase; Provisional | Back alignment and domain information |
|---|
Probab=97.61 E-value=5.6e-05 Score=50.32 Aligned_cols=23 Identities=26% Similarity=0.381 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcC
Q 030504 14 FKLVIVGDGGTGKTTFVKRHLTG 36 (176)
Q Consensus 14 ~~i~i~G~~~~GKttl~~~~~~~ 36 (176)
.=|+|+|++|||||||+++++..
T Consensus 5 ~~ivl~GpsG~GK~tl~~~l~~~ 27 (186)
T PRK14737 5 KLFIISSVAGGGKSTIIQALLEE 27 (186)
T ss_pred eEEEEECCCCCCHHHHHHHHHhc
Confidence 44899999999999999997653
|
|
| >cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.0012 Score=43.49 Aligned_cols=84 Identities=6% Similarity=-0.100 Sum_probs=50.1
Q ss_pred EEEEEeCCCccccccccccccccccEEEEEEeCCChhhhhhHHHHHHHHhhhcCCCCEEEEEeCCCCCccccCHHHHHHH
Q 030504 63 RFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFH 142 (176)
Q Consensus 63 ~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~~~~~~~~~~~~~ 142 (176)
.+.++|+|+.... .....+..+|.++++.+++.. ++..+..+++.+... ......+|.|+.|............+.
T Consensus 64 d~viiD~p~~~~~--~~~~~l~~ad~viiv~~~~~~-s~~~~~~~~~~~~~~-~~~~~~iv~N~~~~~~~~~~~~~~~~~ 139 (179)
T cd02036 64 DYILIDSPAGIER--GFITAIAPADEALLVTTPEIS-SLRDADRVKGLLEAL-GIKVVGVIVNRVRPDMVEGGDMVEDIE 139 (179)
T ss_pred CEEEEECCCCCcH--HHHHHHHhCCcEEEEeCCCcc-hHHHHHHHHHHHHHc-CCceEEEEEeCCcccccchhhHHHHHH
Confidence 6889999975432 234456788999999987643 344444444444442 223467889999876543322223444
Q ss_pred HHcCCeEE
Q 030504 143 RKKNLQYY 150 (176)
Q Consensus 143 ~~~~~~~~ 150 (176)
+..+.+++
T Consensus 140 ~~~~~~v~ 147 (179)
T cd02036 140 EILGVPLL 147 (179)
T ss_pred HHhCCCEE
Confidence 44566554
|
The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer. |
| >cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.00068 Score=39.65 Aligned_cols=69 Identities=20% Similarity=0.198 Sum_probs=42.6
Q ss_pred EEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccc-cccccccccEEEEEEe
Q 030504 16 LVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGL-RDGYYIHGQCAIIMFD 94 (176)
Q Consensus 16 i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~-~~~~~~~~~~~i~v~d 94 (176)
+++.|.+|+||||+...+...-.... ....-. + .+.++|+++....... .......+|.++++++
T Consensus 2 ~~~~g~~G~Gktt~~~~l~~~l~~~g-~~v~~~---------~----d~iivD~~~~~~~~~~~~~~~~~~~~~vi~v~~ 67 (99)
T cd01983 2 IVVTGKGGVGKTTLAANLAAALAKRG-KRVLLI---------D----DYVLIDTPPGLGLLVLLCLLALLAADLVIIVTT 67 (99)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCC-CeEEEE---------C----CEEEEeCCCCccchhhhhhhhhhhCCEEEEecC
Confidence 67889999999999887543221111 111111 1 6788999875432221 1445567899999988
Q ss_pred CCCh
Q 030504 95 VTAR 98 (176)
Q Consensus 95 ~~~~ 98 (176)
.+..
T Consensus 68 ~~~~ 71 (99)
T cd01983 68 PEAL 71 (99)
T ss_pred Cchh
Confidence 7754
|
Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion. |
| >cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.00045 Score=43.54 Aligned_cols=24 Identities=33% Similarity=0.475 Sum_probs=20.2
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcC
Q 030504 13 SFKLVIVGDGGTGKTTFVKRHLTG 36 (176)
Q Consensus 13 ~~~i~i~G~~~~GKttl~~~~~~~ 36 (176)
.-.+++.|++|+|||++++.+...
T Consensus 19 ~~~v~i~G~~G~GKT~l~~~i~~~ 42 (151)
T cd00009 19 PKNLLLYGPPGTGKTTLARAIANE 42 (151)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 346999999999999999986643
|
The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases. |
| >COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=97.54 E-value=7.1e-05 Score=50.96 Aligned_cols=22 Identities=41% Similarity=0.638 Sum_probs=18.5
Q ss_pred EEEEcCCCCcHHHHHHHHhcCCC
Q 030504 16 LVIVGDGGTGKTTFVKRHLTGEF 38 (176)
Q Consensus 16 i~i~G~~~~GKttl~~~~~~~~~ 38 (176)
++|+|++|||||||+|- +.+-.
T Consensus 34 vaI~GpSGSGKSTLLni-ig~ld 55 (226)
T COG1136 34 VAIVGPSGSGKSTLLNL-LGGLD 55 (226)
T ss_pred EEEECCCCCCHHHHHHH-Hhccc
Confidence 89999999999999995 54443
|
|
| >PRK12726 flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.00054 Score=50.37 Aligned_cols=92 Identities=17% Similarity=0.160 Sum_probs=49.2
Q ss_pred EEEEEEEeCCCccccccc----ccccc--ccccEEEEEEeCCChhhhhhHHHHHHHHhhhcCCC-CEEEEEeCCCCCccc
Q 030504 61 KIRFYCWDTAGQEKFGGL----RDGYY--IHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENI-PIVLCGNKVDVKNRQ 133 (176)
Q Consensus 61 ~~~~~~~D~~g~~~~~~~----~~~~~--~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~-p~liv~nK~Dl~~~~ 133 (176)
.+.+.++||+|....... ...+. ...+..++|.+++... ..+...+.. +... +--+|.||.|-...
T Consensus 285 ~~D~VLIDTAGr~~~d~~~l~EL~~l~~~~~p~~~~LVLsag~~~--~d~~~i~~~----f~~l~i~glI~TKLDET~~- 357 (407)
T PRK12726 285 CVDHILIDTVGRNYLAEESVSEISAYTDVVHPDLTCFTFSSGMKS--ADVMTILPK----LAEIPIDGFIITKMDETTR- 357 (407)
T ss_pred CCCEEEEECCCCCccCHHHHHHHHHHhhccCCceEEEECCCcccH--HHHHHHHHh----cCcCCCCEEEEEcccCCCC-
Confidence 357899999997432221 11111 1345666777653221 222222222 2222 34566899998643
Q ss_pred cCHHHHHHHHHcCCeEEEeccCCCCChHH
Q 030504 134 VKAKQVTFHRKKNLQYYEISAKSNYNFEK 162 (176)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~S~~~~~~v~~ 162 (176)
.-...+.....+.|+..+| +|++|.+
T Consensus 358 -~G~~Lsv~~~tglPIsylt--~GQ~Vpd 383 (407)
T PRK12726 358 -IGDLYTVMQETNLPVLYMT--DGQNITE 383 (407)
T ss_pred -ccHHHHHHHHHCCCEEEEe--cCCCCCc
Confidence 3355677777787776664 4455543
|
|
| >PRK05480 uridine/cytidine kinase; Provisional | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.00011 Score=49.87 Aligned_cols=26 Identities=27% Similarity=0.322 Sum_probs=22.2
Q ss_pred CCCeeEEEEEcCCCCcHHHHHHHHhc
Q 030504 10 DYPSFKLVIVGDGGTGKTTFVKRHLT 35 (176)
Q Consensus 10 ~~~~~~i~i~G~~~~GKttl~~~~~~ 35 (176)
..+...|+|.|++|||||||++.+..
T Consensus 3 ~~~~~iI~I~G~sGsGKTTl~~~l~~ 28 (209)
T PRK05480 3 MKKPIIIGIAGGSGSGKTTVASTIYE 28 (209)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHH
Confidence 34678999999999999999998653
|
|
| >TIGR02475 CobW cobalamin biosynthesis protein CobW | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.00075 Score=49.28 Aligned_cols=20 Identities=35% Similarity=0.585 Sum_probs=17.8
Q ss_pred EEEEcCCCCcHHHHHHHHhc
Q 030504 16 LVIVGDGGTGKTTFVKRHLT 35 (176)
Q Consensus 16 i~i~G~~~~GKttl~~~~~~ 35 (176)
.++.|--|+|||||+++++.
T Consensus 7 ~iltGFLGaGKTTll~~ll~ 26 (341)
T TIGR02475 7 TIVTGFLGAGKTTLIRHLLQ 26 (341)
T ss_pred EEEEECCCCCHHHHHHHHHh
Confidence 57789999999999999875
|
A broader CobW family is delineated by two PFAM models which identify the N- and C-terminal domains (pfam02492 and pfam07683). |
| >PRK06217 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=97.53 E-value=8.3e-05 Score=49.40 Aligned_cols=22 Identities=27% Similarity=0.457 Sum_probs=19.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 030504 14 FKLVIVGDGGTGKTTFVKRHLT 35 (176)
Q Consensus 14 ~~i~i~G~~~~GKttl~~~~~~ 35 (176)
.+|+|+|.+|||||||..++..
T Consensus 2 ~~I~i~G~~GsGKSTla~~L~~ 23 (183)
T PRK06217 2 MRIHITGASGSGTTTLGAALAE 23 (183)
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999998654
|
|
| >TIGR00235 udk uridine kinase | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.00011 Score=49.72 Aligned_cols=25 Identities=28% Similarity=0.397 Sum_probs=21.4
Q ss_pred CCCeeEEEEEcCCCCcHHHHHHHHh
Q 030504 10 DYPSFKLVIVGDGGTGKTTFVKRHL 34 (176)
Q Consensus 10 ~~~~~~i~i~G~~~~GKttl~~~~~ 34 (176)
+++..-|+|+|++|||||||++.+.
T Consensus 3 ~~~g~vi~I~G~sGsGKSTl~~~l~ 27 (207)
T TIGR00235 3 KPKGIIIGIGGGSGSGKTTVARKIY 27 (207)
T ss_pred CCCeEEEEEECCCCCCHHHHHHHHH
Confidence 4566779999999999999999865
|
Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below |
| >PF07015 VirC1: VirC1 protein; InterPro: IPR009744 This family consists of several bacterial VirC1 proteins | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.00016 Score=49.24 Aligned_cols=101 Identities=15% Similarity=0.140 Sum_probs=60.6
Q ss_pred EEEEEEEeCCCccccccccccccccccEEEEEEeCCChh--hhhhHHHHHHHHhhh-cCCCCEEEEEeCCCCCccccCHH
Q 030504 61 KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARL--TYKNVPTWHRDLCRV-CENIPIVLCGNKVDVKNRQVKAK 137 (176)
Q Consensus 61 ~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~--s~~~~~~~~~~~~~~-~~~~p~liv~nK~Dl~~~~~~~~ 137 (176)
.+.|.+.|+.|... ......+..+|.+++=.-.+..+ .-.....|+..+.+. ....|.-++.|+.+-........
T Consensus 83 ~~d~VlvDleG~as--~~~~~aia~sDlVlIP~~~s~lD~~eA~~t~~~v~~~~~~~~~~ip~~Vl~Tr~~~~~~~~~~~ 160 (231)
T PF07015_consen 83 GFDFVLVDLEGGAS--ELNDYAIARSDLVLIPMQPSQLDADEAAKTFKWVRRLEKAERRDIPAAVLFTRVPAARLTRAQR 160 (231)
T ss_pred CCCEEEEeCCCCCc--hhHHHHHHHCCEEEECCCCChHHHHHHHHHHHHHHHHHHhhCCCCCeeEEEecCCcchhhHHHH
Confidence 46789999988552 33445566889999855555322 222223444444432 46899999999987432222112
Q ss_pred -HHHHHHHcCCeEEEeccCCCCChHHHHH
Q 030504 138 -QVTFHRKKNLQYYEISAKSNYNFEKPFL 165 (176)
Q Consensus 138 -~~~~~~~~~~~~~~~S~~~~~~v~~~~~ 165 (176)
..++.. ++++|.+.....+.+.++|.
T Consensus 161 ~~~e~~~--~lpvl~t~l~eR~Af~~m~~ 187 (231)
T PF07015_consen 161 IISEQLE--SLPVLDTELHERDAFRAMFS 187 (231)
T ss_pred HHHHHHh--cCCccccccccHHHHHHHHH
Confidence 223332 48888888877666666655
|
In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon, which enhances T-DNA processing probably, does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA []. |
| >PRK12724 flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.0011 Score=49.46 Aligned_cols=139 Identities=15% Similarity=0.145 Sum_probs=70.4
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCC-CCCc---------------------cccceeEEEeEEE-E-----EecCcEEEE
Q 030504 13 SFKLVIVGDGGTGKTTFVKRHLTGE-FEKK---------------------YEPTIGVEVHPLD-F-----FTNCGKIRF 64 (176)
Q Consensus 13 ~~~i~i~G~~~~GKttl~~~~~~~~-~~~~---------------------~~~~~~~~~~~~~-~-----~~~~~~~~~ 64 (176)
..-++++|++||||||++.++.... .... +....+....... . ......+.+
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt~R~aA~eQLk~yAe~lgvp~~~~~~~~~l~~~l~~~~~D~ 302 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYRIAAIEQLKRYADTMGMPFYPVKDIKKFKETLARDGSEL 302 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccchhhhHHHHHHHHHHhcCCCeeehHHHHHHHHHHHhCCCCE
Confidence 4568999999999999999876421 0000 0001111111000 0 001134567
Q ss_pred EEEeCCCccccc-cc---cccccc-----cccEEEEEEeCCChhhhhhHHHHHHHHhhhcCCCCEEEEEeCCCCCccccC
Q 030504 65 YCWDTAGQEKFG-GL---RDGYYI-----HGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVK 135 (176)
Q Consensus 65 ~~~D~~g~~~~~-~~---~~~~~~-----~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~~~~~~ 135 (176)
.++||+|..... .. +..++. ...-.++|+|++... +.+......... -.+-=+|.||.|-....
T Consensus 303 VLIDTaGr~~rd~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~~--~~~~~~~~~f~~---~~~~glIlTKLDEt~~~-- 375 (432)
T PRK12724 303 ILIDTAGYSHRNLEQLERMQSFYSCFGEKDSVENLLVLSSTSSY--HHTLTVLKAYES---LNYRRILLTKLDEADFL-- 375 (432)
T ss_pred EEEeCCCCCccCHHHHHHHHHHHHhhcCCCCCeEEEEEeCCCCH--HHHHHHHHHhcC---CCCCEEEEEcccCCCCc--
Confidence 899999965321 11 111111 234678899988654 122222222211 12235567999975332
Q ss_pred HHHHHHHHHcCCeEEEeccCCCCCh
Q 030504 136 AKQVTFHRKKNLQYYEISAKSNYNF 160 (176)
Q Consensus 136 ~~~~~~~~~~~~~~~~~S~~~~~~v 160 (176)
-....+....+.|+..++ .|++|
T Consensus 376 G~il~i~~~~~lPI~ylt--~GQ~V 398 (432)
T PRK12724 376 GSFLELADTYSKSFTYLS--VGQEV 398 (432)
T ss_pred cHHHHHHHHHCCCEEEEe--cCCCC
Confidence 235666667777766663 34444
|
|
| >PRK14530 adenylate kinase; Provisional | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.00011 Score=50.18 Aligned_cols=21 Identities=24% Similarity=0.397 Sum_probs=19.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHh
Q 030504 14 FKLVIVGDGGTGKTTFVKRHL 34 (176)
Q Consensus 14 ~~i~i~G~~~~GKttl~~~~~ 34 (176)
-+|+|+|++||||||+.+.+.
T Consensus 4 ~~I~i~G~pGsGKsT~~~~La 24 (215)
T PRK14530 4 PRILLLGAPGAGKGTQSSNLA 24 (215)
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 489999999999999999864
|
|
| >PRK03839 putative kinase; Provisional | Back alignment and domain information |
|---|
Probab=97.49 E-value=9.8e-05 Score=48.89 Aligned_cols=21 Identities=38% Similarity=0.447 Sum_probs=18.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 030504 15 KLVIVGDGGTGKTTFVKRHLT 35 (176)
Q Consensus 15 ~i~i~G~~~~GKttl~~~~~~ 35 (176)
+|+++|.+||||||+..++..
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~ 22 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAE 22 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 699999999999999998653
|
|
| >COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.49 E-value=9.6e-05 Score=50.69 Aligned_cols=19 Identities=32% Similarity=0.611 Sum_probs=17.1
Q ss_pred EEEEcCCCCcHHHHHHHHh
Q 030504 16 LVIVGDGGTGKTTFVKRHL 34 (176)
Q Consensus 16 i~i~G~~~~GKttl~~~~~ 34 (176)
++++|++|||||||++-+.
T Consensus 32 vsilGpSGcGKSTLLriiA 50 (248)
T COG1116 32 VAILGPSGCGKSTLLRLIA 50 (248)
T ss_pred EEEECCCCCCHHHHHHHHh
Confidence 8899999999999999643
|
|
| >PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.00012 Score=46.09 Aligned_cols=23 Identities=43% Similarity=0.756 Sum_probs=19.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCC
Q 030504 15 KLVIVGDGGTGKTTFVKRHLTGEF 38 (176)
Q Consensus 15 ~i~i~G~~~~GKttl~~~~~~~~~ 38 (176)
.++|+|++|+|||||++. +.|..
T Consensus 13 ~~~i~G~nGsGKStLl~~-l~g~~ 35 (137)
T PF00005_consen 13 IVAIVGPNGSGKSTLLKA-LAGLL 35 (137)
T ss_dssp EEEEEESTTSSHHHHHHH-HTTSS
T ss_pred EEEEEccCCCccccceee-ecccc
Confidence 589999999999999997 54544
|
ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D .... |
| >PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.00012 Score=45.45 Aligned_cols=20 Identities=40% Similarity=0.469 Sum_probs=17.8
Q ss_pred EEEEcCCCCcHHHHHHHHhc
Q 030504 16 LVIVGDGGTGKTTFVKRHLT 35 (176)
Q Consensus 16 i~i~G~~~~GKttl~~~~~~ 35 (176)
|+|.|.+||||||+++.+..
T Consensus 1 I~i~G~~GsGKtTia~~L~~ 20 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAE 20 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHH
Confidence 78999999999999998653
|
... |
| >PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.00012 Score=45.65 Aligned_cols=19 Identities=37% Similarity=0.609 Sum_probs=17.4
Q ss_pred EEEEcCCCCcHHHHHHHHh
Q 030504 16 LVIVGDGGTGKTTFVKRHL 34 (176)
Q Consensus 16 i~i~G~~~~GKttl~~~~~ 34 (176)
|++.|++|+|||++++.+.
T Consensus 1 ill~G~~G~GKT~l~~~la 19 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALA 19 (132)
T ss_dssp EEEESSTTSSHHHHHHHHH
T ss_pred CEEECcCCCCeeHHHHHHH
Confidence 6899999999999999865
|
Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G .... |
| >cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2 | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.00012 Score=46.25 Aligned_cols=20 Identities=45% Similarity=0.807 Sum_probs=17.8
Q ss_pred EEEEcCCCCcHHHHHHHHhc
Q 030504 16 LVIVGDGGTGKTTFVKRHLT 35 (176)
Q Consensus 16 i~i~G~~~~GKttl~~~~~~ 35 (176)
|+|+|++|+|||||++.+..
T Consensus 2 i~i~GpsGsGKstl~~~L~~ 21 (137)
T cd00071 2 IVLSGPSGVGKSTLLKRLLE 21 (137)
T ss_pred EEEECCCCCCHHHHHHHHHh
Confidence 68999999999999998654
|
7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines. |
| >PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.00013 Score=50.22 Aligned_cols=25 Identities=44% Similarity=0.791 Sum_probs=22.0
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHhc
Q 030504 11 YPSFKLVIVGDGGTGKTTFVKRHLT 35 (176)
Q Consensus 11 ~~~~~i~i~G~~~~GKttl~~~~~~ 35 (176)
+.++|++|+|.+|||||+|+..++.
T Consensus 11 ~~~fr~viIG~sGSGKT~li~~lL~ 35 (241)
T PF04665_consen 11 KDPFRMVIIGKSGSGKTTLIKSLLY 35 (241)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHH
Confidence 4578999999999999999988764
|
This is thought to be an ATPase involved in viral DNA packaging []. |
| >PRK01889 GTPase RsgA; Reviewed | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.00016 Score=53.03 Aligned_cols=22 Identities=32% Similarity=0.573 Sum_probs=19.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 030504 14 FKLVIVGDGGTGKTTFVKRHLT 35 (176)
Q Consensus 14 ~~i~i~G~~~~GKttl~~~~~~ 35 (176)
-+++++|.+|+|||||+|.+..
T Consensus 196 ~~~~lvG~sgvGKStLin~L~g 217 (356)
T PRK01889 196 KTVALLGSSGVGKSTLVNALLG 217 (356)
T ss_pred CEEEEECCCCccHHHHHHHHHH
Confidence 4799999999999999998664
|
|
| >COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.0016 Score=46.78 Aligned_cols=144 Identities=15% Similarity=0.124 Sum_probs=75.6
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHhcCCCCCccc---------------------cceeEEEeEEEE-------------E
Q 030504 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYE---------------------PTIGVEVHPLDF-------------F 56 (176)
Q Consensus 11 ~~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~---------------------~~~~~~~~~~~~-------------~ 56 (176)
..++-|+++|-.|+||||-+-.+.......... .-.|...-.... .
T Consensus 137 ~~p~Vil~vGVNG~GKTTTIaKLA~~l~~~g~~VllaA~DTFRAaAiEQL~~w~er~gv~vI~~~~G~DpAaVafDAi~~ 216 (340)
T COG0552 137 KKPFVILFVGVNGVGKTTTIAKLAKYLKQQGKSVLLAAGDTFRAAAIEQLEVWGERLGVPVISGKEGADPAAVAFDAIQA 216 (340)
T ss_pred CCcEEEEEEecCCCchHhHHHHHHHHHHHCCCeEEEEecchHHHHHHHHHHHHHHHhCCeEEccCCCCCcHHHHHHHHHH
Confidence 457889999999999999887754311000000 001111111110 0
Q ss_pred ecCcEEEEEEEeCCCccccc-cc-----------cccccccccEEEEEEeCCChh-hhhhHHHHHHHHhhhcCCCCEEEE
Q 030504 57 TNCGKIRFYCWDTAGQEKFG-GL-----------RDGYYIHGQCAIIMFDVTARL-TYKNVPTWHRDLCRVCENIPIVLC 123 (176)
Q Consensus 57 ~~~~~~~~~~~D~~g~~~~~-~~-----------~~~~~~~~~~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~p~liv 123 (176)
...+++.+.+.||+|.-... .+ .+..-...+-++++.|++.+. +++.+.. +.+.. +.. -++
T Consensus 217 Akar~~DvvliDTAGRLhnk~nLM~EL~KI~rV~~k~~~~ap~e~llvlDAttGqnal~QAk~----F~eav-~l~-GiI 290 (340)
T COG0552 217 AKARGIDVVLIDTAGRLHNKKNLMDELKKIVRVIKKDDPDAPHEILLVLDATTGQNALSQAKI----FNEAV-GLD-GII 290 (340)
T ss_pred HHHcCCCEEEEeCcccccCchhHHHHHHHHHHHhccccCCCCceEEEEEEcccChhHHHHHHH----HHHhc-CCc-eEE
Confidence 11234678999999943211 11 111112235588888998764 3333332 22221 222 456
Q ss_pred EeCCCCCccccCHHHHHHHHHcCCeEEEeccCCCCChHHHH
Q 030504 124 GNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPF 164 (176)
Q Consensus 124 ~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~ 164 (176)
+||.|-..+ --.....+...++|+..+- -|++++++.
T Consensus 291 lTKlDgtAK--GG~il~I~~~l~~PI~fiG--vGE~~~DL~ 327 (340)
T COG0552 291 LTKLDGTAK--GGIILSIAYELGIPIKFIG--VGEGYDDLR 327 (340)
T ss_pred EEecccCCC--cceeeeHHHHhCCCEEEEe--CCCChhhcc
Confidence 799994322 2233566777888877763 456666553
|
|
| >smart00382 AAA ATPases associated with a variety of cellular activities | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.00014 Score=45.54 Aligned_cols=24 Identities=33% Similarity=0.430 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCC
Q 030504 14 FKLVIVGDGGTGKTTFVKRHLTGE 37 (176)
Q Consensus 14 ~~i~i~G~~~~GKttl~~~~~~~~ 37 (176)
-.++++|++|+||||++..+...-
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~ 26 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALAREL 26 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhcc
Confidence 478999999999999999865433
|
AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment. |
| >PRK10078 ribose 1,5-bisphosphokinase; Provisional | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.00014 Score=48.48 Aligned_cols=21 Identities=19% Similarity=0.428 Sum_probs=18.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 030504 15 KLVIVGDGGTGKTTFVKRHLT 35 (176)
Q Consensus 15 ~i~i~G~~~~GKttl~~~~~~ 35 (176)
.++|+|++|+|||||++.+..
T Consensus 4 ~i~l~G~sGsGKsTl~~~l~~ 24 (186)
T PRK10078 4 LIWLMGPSGSGKDSLLAALRQ 24 (186)
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 689999999999999998643
|
|
| >KOG2484 consensus GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.00022 Score=51.95 Aligned_cols=77 Identities=16% Similarity=0.124 Sum_probs=55.3
Q ss_pred cccccccccEEEEEEeCCChhhhh--hHHHHHHHHhhhcCCCCEEEEEeCCCCCccccCHHHHHHHHHcCCeEEEeccCC
Q 030504 79 RDGYYIHGQCAIIMFDVTARLTYK--NVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKS 156 (176)
Q Consensus 79 ~~~~~~~~~~~i~v~d~~~~~s~~--~~~~~~~~~~~~~~~~p~liv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~S~~~ 156 (176)
.+..+..+|++|.|.|+.||.+-. .++.++ ...-.++..++|+||.|+.++...++...+++..+..+.+.++..
T Consensus 140 ~rkvve~sDVVleVlDARDPlgtR~~~vE~~V---~~~~gnKkLILVLNK~DLVPrEv~e~Wl~YLr~~~ptv~fkast~ 216 (435)
T KOG2484|consen 140 FRKVVEASDVVLEVLDARDPLGTRCPEVEEAV---LQAHGNKKLILVLNKIDLVPREVVEKWLVYLRREGPTVAFKASTQ 216 (435)
T ss_pred HHHHHhhhheEEEeeeccCCCCCCChhHHHHH---HhccCCceEEEEeehhccCCHHHHHHHHHHHHhhCCcceeecccc
Confidence 333456789999999999987543 333332 222236899999999999999988888888888887666655544
Q ss_pred CC
Q 030504 157 NY 158 (176)
Q Consensus 157 ~~ 158 (176)
+.
T Consensus 217 ~~ 218 (435)
T KOG2484|consen 217 MQ 218 (435)
T ss_pred cc
Confidence 43
|
|
| >TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.00013 Score=48.30 Aligned_cols=21 Identities=29% Similarity=0.509 Sum_probs=18.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 030504 15 KLVIVGDGGTGKTTFVKRHLT 35 (176)
Q Consensus 15 ~i~i~G~~~~GKttl~~~~~~ 35 (176)
.++|+|++|||||||++.+..
T Consensus 3 ~~~i~G~sGsGKttl~~~l~~ 23 (179)
T TIGR02322 3 LIYVVGPSGAGKDTLLDYARA 23 (179)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999998543
|
Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP. |
| >PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.00015 Score=45.97 Aligned_cols=21 Identities=29% Similarity=0.612 Sum_probs=18.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 030504 15 KLVIVGDGGTGKTTFVKRHLT 35 (176)
Q Consensus 15 ~i~i~G~~~~GKttl~~~~~~ 35 (176)
.|+|+|+.++|||||+..++.
T Consensus 2 vv~VvG~~~sGKTTl~~~Li~ 22 (140)
T PF03205_consen 2 VVQVVGPKNSGKTTLIRKLIN 22 (140)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 489999999999999998663
|
|
| >KOG1424 consensus Predicted GTP-binding protein MMR1 [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.00048 Score=51.87 Aligned_cols=79 Identities=15% Similarity=0.151 Sum_probs=58.2
Q ss_pred cccccc---cccccEEEEEEeCCChhhhhhHHHHHHHHhhhcCCCCEEEEEeCCCCCccccCHHHHHHHHHcCCeEEEec
Q 030504 77 GLRDGY---YIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEIS 153 (176)
Q Consensus 77 ~~~~~~---~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~S 153 (176)
.+|+++ +..+|+++.++|+.+|--|... ++...+.+.-+++..++++||.||..........+++...+++++..|
T Consensus 163 E~WRQLWRVlErSDivvqIVDARnPllfr~~-dLe~Yvke~d~~K~~~LLvNKaDLl~~~qr~aWa~YF~~~ni~~vf~S 241 (562)
T KOG1424|consen 163 EIWRQLWRVLERSDIVVQIVDARNPLLFRSP-DLEDYVKEVDPSKANVLLVNKADLLPPEQRVAWAEYFRQNNIPVVFFS 241 (562)
T ss_pred HHHHHHHHHHhhcceEEEEeecCCccccCCh-hHHHHHhccccccceEEEEehhhcCCHHHHHHHHHHHHhcCceEEEEe
Confidence 345554 4578999999999998644322 222333333346788999999999887777777788888999999999
Q ss_pred cCC
Q 030504 154 AKS 156 (176)
Q Consensus 154 ~~~ 156 (176)
|..
T Consensus 242 A~~ 244 (562)
T KOG1424|consen 242 ALA 244 (562)
T ss_pred ccc
Confidence 886
|
|
| >TIGR00150 HI0065_YjeE ATPase, YjeE family | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.00049 Score=43.11 Aligned_cols=23 Identities=43% Similarity=0.642 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcC
Q 030504 14 FKLVIVGDGGTGKTTFVKRHLTG 36 (176)
Q Consensus 14 ~~i~i~G~~~~GKttl~~~~~~~ 36 (176)
--|++.|+.|+|||||++.+..+
T Consensus 23 ~~i~l~G~lGaGKTtl~~~l~~~ 45 (133)
T TIGR00150 23 TVVLLKGDLGAGKTTLVQGLLQG 45 (133)
T ss_pred CEEEEEcCCCCCHHHHHHHHHHH
Confidence 35899999999999999997764
|
Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity. |
| >PRK13949 shikimate kinase; Provisional | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.00015 Score=47.48 Aligned_cols=20 Identities=40% Similarity=0.539 Sum_probs=18.2
Q ss_pred EEEEEcCCCCcHHHHHHHHh
Q 030504 15 KLVIVGDGGTGKTTFVKRHL 34 (176)
Q Consensus 15 ~i~i~G~~~~GKttl~~~~~ 34 (176)
+|+|+|++|+||||+...+.
T Consensus 3 ~I~liG~~GsGKstl~~~La 22 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALA 22 (169)
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 79999999999999999754
|
|
| >cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.00016 Score=43.42 Aligned_cols=21 Identities=33% Similarity=0.601 Sum_probs=18.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHh
Q 030504 14 FKLVIVGDGGTGKTTFVKRHL 34 (176)
Q Consensus 14 ~~i~i~G~~~~GKttl~~~~~ 34 (176)
-.++++|++|+|||||++.+.
T Consensus 16 e~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 16 VGVLITGDSGIGKTELALELI 36 (107)
T ss_pred EEEEEEcCCCCCHHHHHHHhh
Confidence 458999999999999999855
|
It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural |
| >PRK08233 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.0002 Score=47.40 Aligned_cols=23 Identities=30% Similarity=0.374 Sum_probs=19.6
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhc
Q 030504 13 SFKLVIVGDGGTGKTTFVKRHLT 35 (176)
Q Consensus 13 ~~~i~i~G~~~~GKttl~~~~~~ 35 (176)
..-|+|.|.+|||||||.+++..
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~ 25 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTH 25 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHh
Confidence 46788999999999999998653
|
|
| >COG1161 Predicted GTPases [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.00044 Score=50.11 Aligned_cols=92 Identities=22% Similarity=0.185 Sum_probs=63.8
Q ss_pred eCCCcc-ccccccccccccccEEEEEEeCCChhhhhhHHHHHHHHhhhcCCCCEEEEEeCCCCCccccCHHHHHHHHHc-
Q 030504 68 DTAGQE-KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKK- 145 (176)
Q Consensus 68 D~~g~~-~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~~~~~~~~~~~~~~~~- 145 (176)
+.+|+. .+.......+..+|+++-|+|+.++.+...- .+.+...+.|.++|+||+|+.+.....+........
T Consensus 16 ~~~g~~~k~~~~~~~~~~~~d~vvevvDar~P~~s~~~-----~l~~~v~~k~~i~vlNK~DL~~~~~~~~W~~~~~~~~ 90 (322)
T COG1161 16 WFPGHMKKAKRQLKEVLKSVDVVVEVVDARDPLGTRNP-----ELERIVKEKPKLLVLNKADLAPKEVTKKWKKYFKKEE 90 (322)
T ss_pred CCCCchHHHHHHHHHhcccCCEEEEEEeccccccccCc-----cHHHHHccCCcEEEEehhhcCCHHHHHHHHHHHHhcC
Confidence 336654 3445566677889999999999998644322 223333466779999999999877766655555554
Q ss_pred CCeEEEeccCCCCChHHHH
Q 030504 146 NLQYYEISAKSNYNFEKPF 164 (176)
Q Consensus 146 ~~~~~~~S~~~~~~v~~~~ 164 (176)
+...+.+++..+.+...+.
T Consensus 91 ~~~~~~v~~~~~~~~~~i~ 109 (322)
T COG1161 91 GIKPIFVSAKSRQGGKKIR 109 (322)
T ss_pred CCccEEEEeecccCccchH
Confidence 6777888888887766555
|
|
| >COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.00026 Score=47.04 Aligned_cols=23 Identities=35% Similarity=0.635 Sum_probs=18.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCC
Q 030504 15 KLVIVGDGGTGKTTFVKRHLTGEF 38 (176)
Q Consensus 15 ~i~i~G~~~~GKttl~~~~~~~~~ 38 (176)
-++++|++|||||||+|- ..|-.
T Consensus 33 ~vv~lGpSGcGKTTLLnl-~AGf~ 55 (259)
T COG4525 33 LVVVLGPSGCGKTTLLNL-IAGFV 55 (259)
T ss_pred EEEEEcCCCccHHHHHHH-HhcCc
Confidence 378999999999999995 54443
|
|
| >PTZ00088 adenylate kinase 1; Provisional | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.00019 Score=49.41 Aligned_cols=23 Identities=35% Similarity=0.569 Sum_probs=20.2
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhc
Q 030504 13 SFKLVIVGDGGTGKTTFVKRHLT 35 (176)
Q Consensus 13 ~~~i~i~G~~~~GKttl~~~~~~ 35 (176)
.+||+|+|+|||||||+...+..
T Consensus 6 ~mrIvl~G~PGsGK~T~a~~La~ 28 (229)
T PTZ00088 6 PLKIVLFGAPGVGKGTFAEILSK 28 (229)
T ss_pred CceEEEECCCCCCHHHHHHHHHH
Confidence 47899999999999999998654
|
|
| >cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.00019 Score=47.32 Aligned_cols=22 Identities=36% Similarity=0.643 Sum_probs=19.1
Q ss_pred eeEEEEEcCCCCcHHHHHHHHh
Q 030504 13 SFKLVIVGDGGTGKTTFVKRHL 34 (176)
Q Consensus 13 ~~~i~i~G~~~~GKttl~~~~~ 34 (176)
.-.++++|++|+|||||++.++
T Consensus 21 G~~~~l~G~nG~GKSTLl~~il 42 (176)
T cd03238 21 NVLVVVTGVSGSGKSTLVNEGL 42 (176)
T ss_pred CCEEEEECCCCCCHHHHHHHHh
Confidence 3468999999999999999764
|
Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases. |
| >PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids [] | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.00019 Score=45.41 Aligned_cols=21 Identities=38% Similarity=0.637 Sum_probs=18.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 030504 15 KLVIVGDGGTGKTTFVKRHLT 35 (176)
Q Consensus 15 ~i~i~G~~~~GKttl~~~~~~ 35 (176)
.|+++|++|+|||+|+..+..
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~ 21 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAA 21 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 489999999999999998653
|
The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A. |
| >PRK04195 replication factor C large subunit; Provisional | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.0027 Score=48.69 Aligned_cols=23 Identities=26% Similarity=0.408 Sum_probs=19.8
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhc
Q 030504 13 SFKLVIVGDGGTGKTTFVKRHLT 35 (176)
Q Consensus 13 ~~~i~i~G~~~~GKttl~~~~~~ 35 (176)
.-.+++.|++|+||||+++.+..
T Consensus 39 ~~~lLL~GppG~GKTtla~ala~ 61 (482)
T PRK04195 39 KKALLLYGPPGVGKTSLAHALAN 61 (482)
T ss_pred CCeEEEECCCCCCHHHHHHHHHH
Confidence 45689999999999999998654
|
|
| >KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.00016 Score=45.67 Aligned_cols=24 Identities=29% Similarity=0.487 Sum_probs=21.1
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHh
Q 030504 11 YPSFKLVIVGDGGTGKTTFVKRHL 34 (176)
Q Consensus 11 ~~~~~i~i~G~~~~GKttl~~~~~ 34 (176)
...-||+|.|.||+|||||..++.
T Consensus 5 r~~PNILvtGTPG~GKstl~~~la 28 (176)
T KOG3347|consen 5 RERPNILVTGTPGTGKSTLAERLA 28 (176)
T ss_pred hcCCCEEEeCCCCCCchhHHHHHH
Confidence 455689999999999999999965
|
|
| >PRK14532 adenylate kinase; Provisional | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.00019 Score=47.90 Aligned_cols=21 Identities=33% Similarity=0.518 Sum_probs=18.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 030504 15 KLVIVGDGGTGKTTFVKRHLT 35 (176)
Q Consensus 15 ~i~i~G~~~~GKttl~~~~~~ 35 (176)
+|+++|+|||||||+..++..
T Consensus 2 ~i~~~G~pGsGKsT~a~~la~ 22 (188)
T PRK14532 2 NLILFGPPAAGKGTQAKRLVE 22 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 799999999999999998653
|
|
| >PRK00625 shikimate kinase; Provisional | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.0002 Score=47.09 Aligned_cols=20 Identities=30% Similarity=0.403 Sum_probs=18.3
Q ss_pred EEEEEcCCCCcHHHHHHHHh
Q 030504 15 KLVIVGDGGTGKTTFVKRHL 34 (176)
Q Consensus 15 ~i~i~G~~~~GKttl~~~~~ 34 (176)
+|+++|.+||||||+...+.
T Consensus 2 ~I~LiG~pGsGKTT~~k~La 21 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALA 21 (173)
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 79999999999999999864
|
|
| >cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2 | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.00018 Score=48.34 Aligned_cols=20 Identities=35% Similarity=0.599 Sum_probs=17.6
Q ss_pred EEEEcCCCCcHHHHHHHHhc
Q 030504 16 LVIVGDGGTGKTTFVKRHLT 35 (176)
Q Consensus 16 i~i~G~~~~GKttl~~~~~~ 35 (176)
|.|.|++|||||||++.+..
T Consensus 2 igi~G~~GsGKSTl~~~l~~ 21 (198)
T cd02023 2 IGIAGGSGSGKTTVAEEIIE 21 (198)
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 68999999999999998643
|
7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine. |
| >COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.00019 Score=49.94 Aligned_cols=20 Identities=35% Similarity=0.501 Sum_probs=17.7
Q ss_pred EEEEcCCCCcHHHHHHHHhc
Q 030504 16 LVIVGDGGTGKTTFVKRHLT 35 (176)
Q Consensus 16 i~i~G~~~~GKttl~~~~~~ 35 (176)
++|+|+.|||||||++.+.+
T Consensus 31 ~~iiGpNG~GKSTLLk~l~g 50 (258)
T COG1120 31 TGILGPNGSGKSTLLKCLAG 50 (258)
T ss_pred EEEECCCCCCHHHHHHHHhc
Confidence 78999999999999998553
|
|
| >TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.00019 Score=47.73 Aligned_cols=20 Identities=35% Similarity=0.559 Sum_probs=18.2
Q ss_pred EEEEEcCCCCcHHHHHHHHh
Q 030504 15 KLVIVGDGGTGKTTFVKRHL 34 (176)
Q Consensus 15 ~i~i~G~~~~GKttl~~~~~ 34 (176)
-|+++|++||||||+++.+.
T Consensus 5 ii~i~G~~GsGKsTl~~~l~ 24 (188)
T TIGR01360 5 IIFIVGGPGSGKGTQCEKIV 24 (188)
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 58899999999999999865
|
Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351. |
| >TIGR03263 guanyl_kin guanylate kinase | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.0002 Score=47.31 Aligned_cols=21 Identities=48% Similarity=0.695 Sum_probs=18.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 030504 15 KLVIVGDGGTGKTTFVKRHLT 35 (176)
Q Consensus 15 ~i~i~G~~~~GKttl~~~~~~ 35 (176)
-|+++|++|||||||++.+..
T Consensus 3 ii~l~G~~GsGKsTl~~~L~~ 23 (180)
T TIGR03263 3 LIVISGPSGVGKSTLVKALLE 23 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 489999999999999998654
|
Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP. |
| >PRK14531 adenylate kinase; Provisional | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.00025 Score=47.15 Aligned_cols=22 Identities=32% Similarity=0.462 Sum_probs=19.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 030504 14 FKLVIVGDGGTGKTTFVKRHLT 35 (176)
Q Consensus 14 ~~i~i~G~~~~GKttl~~~~~~ 35 (176)
.+|+++|+|||||||+..++..
T Consensus 3 ~~i~i~G~pGsGKsT~~~~la~ 24 (183)
T PRK14531 3 QRLLFLGPPGAGKGTQAARLCA 24 (183)
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999998643
|
|
| >PF03215 Rad17: Rad17 cell cycle checkpoint protein | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.0047 Score=47.64 Aligned_cols=83 Identities=10% Similarity=0.127 Sum_probs=41.6
Q ss_pred cEEEEEEeCCChhhh--hhHHHHHHHHhhhcCCC-CEEEEEeCCCCCc--cccCH-----H-H--HHHHHHcCCeEEEec
Q 030504 87 QCAIIMFDVTARLTY--KNVPTWHRDLCRVCENI-PIVLCGNKVDVKN--RQVKA-----K-Q--VTFHRKKNLQYYEIS 153 (176)
Q Consensus 87 ~~~i~v~d~~~~~s~--~~~~~~~~~~~~~~~~~-p~liv~nK~Dl~~--~~~~~-----~-~--~~~~~~~~~~~~~~S 153 (176)
--+|+|=|.-+...- ......+...... ... |+++|++=+|... ..... + . .++....++..+...
T Consensus 133 ~kvILVEDlPN~~~~~~~~f~~~L~~~l~~-~~~~PlV~iiSe~~~~~~~~~~~~~~~t~~~L~~~~il~~~~i~~I~FN 211 (519)
T PF03215_consen 133 KKVILVEDLPNVFHRDTSRFREALRQYLRS-SRCLPLVFIISETESLSGDNSYRSNSFTAERLFPKEILNHPGITRIKFN 211 (519)
T ss_pred ceEEEeeccccccchhHHHHHHHHHHHHHc-CCCCCEEEEEecccccCCCCcccccchhhhhccCHHHHhCCCceEEEec
Confidence 455666666542211 2222222222222 344 9999999665332 11100 0 1 134445567777777
Q ss_pred cCCCCChHHHHHHHHHH
Q 030504 154 AKSNYNFEKPFLYLARK 170 (176)
Q Consensus 154 ~~~~~~v~~~~~~l~~~ 170 (176)
+....-+...+..++..
T Consensus 212 pIa~T~mkKaL~rI~~~ 228 (519)
T PF03215_consen 212 PIAPTFMKKALKRILKK 228 (519)
T ss_pred CCCHHHHHHHHHHHHHH
Confidence 77666666666666553
|
|
| >PRK06547 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.00031 Score=46.14 Aligned_cols=25 Identities=28% Similarity=0.352 Sum_probs=21.5
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHhc
Q 030504 11 YPSFKLVIVGDGGTGKTTFVKRHLT 35 (176)
Q Consensus 11 ~~~~~i~i~G~~~~GKttl~~~~~~ 35 (176)
.+...|+|.|.+|||||||.+.+..
T Consensus 13 ~~~~~i~i~G~~GsGKTt~a~~l~~ 37 (172)
T PRK06547 13 GGMITVLIDGRSGSGKTTLAGALAA 37 (172)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 4567899999999999999998754
|
|
| >cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.00025 Score=47.25 Aligned_cols=22 Identities=36% Similarity=0.599 Sum_probs=19.3
Q ss_pred eeEEEEEcCCCCcHHHHHHHHh
Q 030504 13 SFKLVIVGDGGTGKTTFVKRHL 34 (176)
Q Consensus 13 ~~~i~i~G~~~~GKttl~~~~~ 34 (176)
.-.++++|++|+|||||++.++
T Consensus 25 g~~i~I~G~tGSGKTTll~aL~ 46 (186)
T cd01130 25 RKNILISGGTGSGKTTLLNALL 46 (186)
T ss_pred CCEEEEECCCCCCHHHHHHHHH
Confidence 4579999999999999999855
|
The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase. |
| >cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP) | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.0002 Score=47.87 Aligned_cols=21 Identities=29% Similarity=0.571 Sum_probs=18.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 030504 15 KLVIVGDGGTGKTTFVKRHLT 35 (176)
Q Consensus 15 ~i~i~G~~~~GKttl~~~~~~ 35 (176)
+|+|+|++||||||+...+..
T Consensus 1 ~I~i~G~pGsGKst~a~~La~ 21 (194)
T cd01428 1 RILLLGPPGSGKGTQAERLAK 21 (194)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999998653
|
This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates. |
| >COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.00025 Score=46.54 Aligned_cols=21 Identities=33% Similarity=0.719 Sum_probs=18.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 030504 15 KLVIVGDGGTGKTTFVKRHLTG 36 (176)
Q Consensus 15 ~i~i~G~~~~GKttl~~~~~~~ 36 (176)
.++|+|++|+|||||+|- ..|
T Consensus 27 ~vAi~GpSGaGKSTLLnL-IAG 47 (231)
T COG3840 27 IVAILGPSGAGKSTLLNL-IAG 47 (231)
T ss_pred EEEEECCCCccHHHHHHH-HHh
Confidence 689999999999999996 444
|
|
| >PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.00023 Score=46.66 Aligned_cols=21 Identities=43% Similarity=0.517 Sum_probs=18.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHh
Q 030504 14 FKLVIVGDGGTGKTTFVKRHL 34 (176)
Q Consensus 14 ~~i~i~G~~~~GKttl~~~~~ 34 (176)
.-+.|+|.+|||||||+.++.
T Consensus 7 ~ii~ivG~sgsGKTTLi~~li 27 (173)
T PRK10751 7 PLLAIAAWSGTGKTTLLKKLI 27 (173)
T ss_pred eEEEEECCCCChHHHHHHHHH
Confidence 358999999999999999965
|
|
| >cd01131 PilT Pilus retraction ATPase PilT | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.00098 Score=44.89 Aligned_cols=21 Identities=24% Similarity=0.469 Sum_probs=18.5
Q ss_pred EEEEcCCCCcHHHHHHHHhcC
Q 030504 16 LVIVGDGGTGKTTFVKRHLTG 36 (176)
Q Consensus 16 i~i~G~~~~GKttl~~~~~~~ 36 (176)
|+|+|++|+||||+++.++..
T Consensus 4 ilI~GptGSGKTTll~~ll~~ 24 (198)
T cd01131 4 VLVTGPTGSGKSTTLAAMIDY 24 (198)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999986644
|
PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility. |
| >COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.00025 Score=48.37 Aligned_cols=20 Identities=40% Similarity=0.895 Sum_probs=17.9
Q ss_pred EEEEcCCCCcHHHHHHHHhcC
Q 030504 16 LVIVGDGGTGKTTFVKRHLTG 36 (176)
Q Consensus 16 i~i~G~~~~GKttl~~~~~~~ 36 (176)
|+++|++|+|||||++. +.+
T Consensus 33 VaiIG~SGaGKSTLLR~-lng 52 (258)
T COG3638 33 VAIIGPSGAGKSTLLRS-LNG 52 (258)
T ss_pred EEEECCCCCcHHHHHHH-Hhc
Confidence 89999999999999998 444
|
|
| >PRK02496 adk adenylate kinase; Provisional | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.00029 Score=46.79 Aligned_cols=21 Identities=29% Similarity=0.379 Sum_probs=19.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHh
Q 030504 14 FKLVIVGDGGTGKTTFVKRHL 34 (176)
Q Consensus 14 ~~i~i~G~~~~GKttl~~~~~ 34 (176)
.|++|+|++||||||+...+.
T Consensus 2 ~~i~i~G~pGsGKst~a~~la 22 (184)
T PRK02496 2 TRLIFLGPPGAGKGTQAVVLA 22 (184)
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 579999999999999999865
|
|
| >COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.00028 Score=45.78 Aligned_cols=21 Identities=38% Similarity=0.474 Sum_probs=18.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHh
Q 030504 14 FKLVIVGDGGTGKTTFVKRHL 34 (176)
Q Consensus 14 ~~i~i~G~~~~GKttl~~~~~ 34 (176)
.+|+|.|.||+||||+..++.
T Consensus 1 m~I~ITGTPGvGKTT~~~~L~ 21 (180)
T COG1936 1 MLIAITGTPGVGKTTVCKLLR 21 (180)
T ss_pred CeEEEeCCCCCchHHHHHHHH
Confidence 379999999999999999865
|
|
| >TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.00026 Score=46.89 Aligned_cols=20 Identities=25% Similarity=0.508 Sum_probs=17.7
Q ss_pred EEEEcCCCCcHHHHHHHHhc
Q 030504 16 LVIVGDGGTGKTTFVKRHLT 35 (176)
Q Consensus 16 i~i~G~~~~GKttl~~~~~~ 35 (176)
|+++|+|||||||+..++..
T Consensus 2 i~i~G~pGsGKst~a~~la~ 21 (183)
T TIGR01359 2 VFVLGGPGSGKGTQCAKIVE 21 (183)
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 78999999999999998653
|
This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic. |
| >COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.00024 Score=47.77 Aligned_cols=19 Identities=26% Similarity=0.532 Sum_probs=16.8
Q ss_pred EEEEcCCCCcHHHHHHHHh
Q 030504 16 LVIVGDGGTGKTTFVKRHL 34 (176)
Q Consensus 16 i~i~G~~~~GKttl~~~~~ 34 (176)
.+++|++|||||||++.+-
T Consensus 36 TAlIGPSGcGKST~LR~lN 54 (253)
T COG1117 36 TALIGPSGCGKSTLLRCLN 54 (253)
T ss_pred EEEECCCCcCHHHHHHHHH
Confidence 5899999999999999743
|
|
| >PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.00028 Score=43.99 Aligned_cols=24 Identities=46% Similarity=0.531 Sum_probs=18.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCC
Q 030504 14 FKLVIVGDGGTGKTTFVKRHLTGE 37 (176)
Q Consensus 14 ~~i~i~G~~~~GKttl~~~~~~~~ 37 (176)
--++|.|++|+|||++++++....
T Consensus 5 ~~~~i~G~~G~GKT~~~~~~~~~~ 28 (131)
T PF13401_consen 5 RILVISGPPGSGKTTLIKRLARQL 28 (131)
T ss_dssp --EEEEE-TTSSHHHHHHHHHHHH
T ss_pred cccEEEcCCCCCHHHHHHHHHHHh
Confidence 357899999999999999977543
|
|
| >cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.0003 Score=46.45 Aligned_cols=24 Identities=54% Similarity=0.671 Sum_probs=19.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCC
Q 030504 14 FKLVIVGDGGTGKTTFVKRHLTGEF 38 (176)
Q Consensus 14 ~~i~i~G~~~~GKttl~~~~~~~~~ 38 (176)
=.++++|++|+|||||++. +.|..
T Consensus 26 e~~~l~G~nGsGKSTLl~~-l~Gl~ 49 (177)
T cd03222 26 EVIGIVGPNGTGKTTAVKI-LAGQL 49 (177)
T ss_pred CEEEEECCCCChHHHHHHH-HHcCC
Confidence 3689999999999999997 55554
|
RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. |
| >cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.00026 Score=48.47 Aligned_cols=19 Identities=26% Similarity=0.296 Sum_probs=17.0
Q ss_pred EEEEcCCCCcHHHHHHHHh
Q 030504 16 LVIVGDGGTGKTTFVKRHL 34 (176)
Q Consensus 16 i~i~G~~~~GKttl~~~~~ 34 (176)
|.|.|++|||||||++.+.
T Consensus 2 igI~G~sGSGKTTla~~L~ 20 (220)
T cd02025 2 IGIAGSVAVGKSTTARVLQ 20 (220)
T ss_pred EEeeCCCCCCHHHHHHHHH
Confidence 6789999999999999854
|
The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis. |
| >COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.00027 Score=51.08 Aligned_cols=20 Identities=30% Similarity=0.606 Sum_probs=17.6
Q ss_pred EEEEcCCCCcHHHHHHHHhc
Q 030504 16 LVIVGDGGTGKTTFVKRHLT 35 (176)
Q Consensus 16 i~i~G~~~~GKttl~~~~~~ 35 (176)
++++|++|||||||++.+.+
T Consensus 32 ~vllGPSGcGKSTlLr~IAG 51 (338)
T COG3839 32 VVLLGPSGCGKSTLLRMIAG 51 (338)
T ss_pred EEEECCCCCCHHHHHHHHhC
Confidence 78999999999999997543
|
|
| >PRK00300 gmk guanylate kinase; Provisional | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.00039 Score=47.00 Aligned_cols=24 Identities=38% Similarity=0.621 Sum_probs=20.1
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHhc
Q 030504 12 PSFKLVIVGDGGTGKTTFVKRHLT 35 (176)
Q Consensus 12 ~~~~i~i~G~~~~GKttl~~~~~~ 35 (176)
+.--|+|+|++|||||||++.+..
T Consensus 4 ~g~~i~i~G~sGsGKstl~~~l~~ 27 (205)
T PRK00300 4 RGLLIVLSGPSGAGKSTLVKALLE 27 (205)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHh
Confidence 345699999999999999998554
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 176 | ||||
| 3m1i_A | 219 | Crystal Structure Of Yeast Crm1 (Xpo1p) In Complex | 2e-81 | ||
| 3icq_B | 171 | Karyopherin Nuclear State Length = 171 | 1e-80 | ||
| 2x19_A | 172 | Crystal Structure Of Importin13 - Rangtp Complex Le | 2e-80 | ||
| 1byu_A | 216 | Canine Gdp-Ran Length = 216 | 1e-79 | ||
| 2bku_A | 177 | Kap95p:rangtp Complex Length = 177 | 9e-79 | ||
| 1a2k_C | 216 | Gdpran-Ntf2 Complex Length = 216 | 9e-79 | ||
| 3gj0_A | 221 | Crystal Structure Of Human Rangdp Length = 221 | 1e-78 | ||
| 1rrp_A | 204 | Structure Of The Ran-Gppnhp-Ranbd1 Complex Length = | 2e-78 | ||
| 3ea5_A | 216 | Kap95p Binding Induces The Switch Loops Of Rangdp T | 2e-78 | ||
| 1qg4_A | 216 | Canine Gdp-Ran F72y Mutant Length = 216 | 2e-78 | ||
| 1qg2_A | 216 | Canine Gdp-Ran R76e Mutant Length = 216 | 4e-78 | ||
| 1wa5_A | 176 | Crystal Structure Of The Exportin Cse1p Complexed W | 7e-78 | ||
| 3ran_A | 216 | Canine Gdp-Ran Q69l Mutant Length = 216 | 7e-78 | ||
| 3gj4_A | 221 | Crystal Structure Of Human Rangdp-Nup153znf3 Comple | 9e-78 | ||
| 1qbk_C | 216 | Structure Of The Karyopherin Beta2-ran Gppnhp Nucle | 1e-77 | ||
| 3nc1_C | 182 | Crystal Structure Of The Crm1-Rangtp Complex Length | 3e-77 | ||
| 3nby_C | 176 | Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclea | 6e-77 | ||
| 4djt_A | 218 | Crystal Structure Of A Nuclear Gtp-Binding Protein | 3e-39 | ||
| 1vg1_A | 185 | Gdp-bound Rab7 Length = 185 | 4e-27 | ||
| 1vg0_B | 207 | The Crystal Structures Of The Rep-1 Protein In Comp | 5e-27 | ||
| 3law_A | 207 | Structure Of Gtp-Bound L129f Mutant Rab7 Length = 2 | 1e-26 | ||
| 1t91_A | 207 | Crystal Structure Of Human Small Gtpase Rab7(Gtp) L | 4e-26 | ||
| 2ew1_A | 201 | Crystal Structure Of Rab30 In Complex With A Gtp An | 1e-23 | ||
| 2hei_A | 179 | Crystal Structure Of Human Rab5b In Complex With Gd | 2e-23 | ||
| 1yzl_A | 179 | Gppnhp-Bound Rab9 Gtpase Length = 179 | 2e-23 | ||
| 1z22_A | 168 | Gdp-Bound Rab23 Gtpase Crystallized In C222(1) Spac | 3e-23 | ||
| 1wms_A | 177 | High Resolution Crystal Structure Of Human Rab9 Gtp | 6e-23 | ||
| 1tu3_A | 171 | Crystal Structure Of Rab5 Complex With Rabaptin5 C- | 2e-22 | ||
| 1n6h_A | 170 | Crystal Structure Of Human Rab5a Length = 170 | 2e-22 | ||
| 1s8f_A | 177 | Crystal Structure Of Rab9 Complexed To Gdp Reveals | 2e-22 | ||
| 1huq_A | 164 | 1.8a Crystal Structure Of The Monomeric Gtpase Rab5 | 3e-22 | ||
| 2f9l_A | 199 | 3d Structure Of Inactive Human Rab11b Gtpase Length | 3e-22 | ||
| 1n6o_A | 170 | Crystal Structure Of Human Rab5a A30k Mutant Comple | 4e-22 | ||
| 1n6p_A | 170 | Crystal Structure Of Human Rab5a A30e Mutant Comple | 4e-22 | ||
| 1n6n_A | 170 | Crystal Structure Of Human Rab5a A30r Mutant Comple | 4e-22 | ||
| 1n6i_A | 170 | Crystal Structure Of Human Rab5a A30p Mutant Comple | 4e-22 | ||
| 1n6r_A | 170 | Crystal Structure Of Human Rab5a A30l Mutant Comple | 5e-22 | ||
| 1tu4_A | 171 | Crystal Structure Of Rab5-Gdp Complex Length = 171 | 5e-22 | ||
| 2hup_A | 201 | Crystal Structure Of Human Rab43 In Complex With Gd | 9e-22 | ||
| 3mjh_A | 168 | Crystal Structure Of Human Rab5a In Complex With Th | 1e-21 | ||
| 1yzk_A | 184 | Gppnhp Bound Rab11 Gtpase Length = 184 | 1e-21 | ||
| 1oiv_A | 191 | X-Ray Structure Of The Small G Protein Rab11a In Co | 1e-21 | ||
| 2efc_B | 181 | Ara7-GdpATVPS9A Length = 181 | 1e-21 | ||
| 3tw8_B | 181 | Gef Domain Of Dennd 1b In Complex With Rab Gtpase R | 2e-21 | ||
| 1z07_A | 166 | Gppnhp-Bound Rab5c G55q Mutant Gtpase Length = 166 | 2e-21 | ||
| 1z0d_A | 167 | Gdp-bound Rab5c Gtpase Length = 167 | 2e-21 | ||
| 2ocb_A | 180 | Crystal Structure Of Human Rab9b In Complex With A | 3e-21 | ||
| 2o52_A | 200 | Crystal Structure Of Human Rab4b In Complex With Gd | 4e-21 | ||
| 2bmd_A | 186 | High Resolution Structure Of Gdp-Bound Human Rab4a | 4e-21 | ||
| 1ek0_A | 170 | Gppnhp-Bound Ypt51 At 1.48 A Resolution Length = 17 | 5e-21 | ||
| 2hv8_A | 172 | Crystal Structure Of Gtp-Bound Rab11 In Complex Wit | 9e-21 | ||
| 1oiw_A | 191 | X-ray Structure Of The Small G Protein Rab11a In Co | 1e-20 | ||
| 1z0a_A | 174 | Gdp-Bound Rab2a Gtpase Length = 174 | 1e-20 | ||
| 1yu9_A | 175 | Gppnhp-Bound Rab4a Length = 175 | 2e-20 | ||
| 2gzd_A | 173 | Crystal Structure Of Rab11 In Complex With Rab11-Fi | 2e-20 | ||
| 2d7c_A | 167 | Crystal Structure Of Human Rab11 In Complex With Fi | 2e-20 | ||
| 3jza_A | 175 | Crystal Structure Of Human Rab1b In Complex With Th | 3e-20 | ||
| 4i1o_A | 181 | Crystal Structure Of The Legionella Pneumophila Gap | 3e-20 | ||
| 1yzq_A | 170 | Gppnhp-Bound Rab6 Gtpase Length = 170 | 3e-20 | ||
| 1d5c_A | 162 | Crystal Structure Of Plasmodium Falciparum Rab6 Com | 4e-20 | ||
| 2y8e_A | 179 | Crystal Structure Of D. Melanogaster Rab6 Gtpase Bo | 4e-20 | ||
| 2fu5_C | 183 | Structure Of Rab8 In Complex With Mss4 Length = 183 | 5e-20 | ||
| 2a5j_A | 191 | Crystal Structure Of Human Rab2b Length = 191 | 8e-20 | ||
| 4fmb_B | 171 | Vira-Rab1 Complex Structure Length = 171 | 8e-20 | ||
| 3tkl_A | 196 | Crystal Structure Of The Gtp-Bound Rab1a In Complex | 8e-20 | ||
| 1z0f_A | 179 | Gdp-Bound Rab14 Gtpase Length = 179 | 9e-20 | ||
| 4fmc_B | 171 | Espg-Rab1 Complex Length = 171 | 9e-20 | ||
| 2fol_A | 191 | Crystal Structure Of Human Rab1a In Complex With Gd | 1e-19 | ||
| 1z0k_A | 172 | Structure Of Gtp-Bound Rab4q67l Gtpase In Complex W | 1e-19 | ||
| 1x3s_A | 195 | Crystal Structure Of Human Rab18 In Complex With Gp | 1e-19 | ||
| 3bfk_A | 181 | Crystal Structure Of Plasmodium Falciparum Rab11a I | 1e-19 | ||
| 3sfv_A | 181 | Crystal Structure Of The Gdp-Bound Rab1a S25n Mutan | 1e-19 | ||
| 3qbt_A | 174 | Crystal Structure Of Ocrl1 540-678 In Complex With | 1e-19 | ||
| 2f7s_A | 217 | The Crystal Structure Of Human Rab27b Bound To Gdp | 1e-19 | ||
| 2gil_A | 162 | Structure Of The Extremely Slow Gtpase Rab6a In The | 2e-19 | ||
| 2rhd_A | 175 | Crystal Structure Of Cryptosporidium Parvum Small G | 2e-19 | ||
| 4dkx_A | 216 | Crystal Structure Of The Rab 6a'(Q72l) Length = 216 | 3e-19 | ||
| 4fmd_F | 164 | Espg-Rab1 Complex Structure At 3.05 A Length = 164 | 4e-19 | ||
| 3cpj_B | 223 | Crystal Structure Of Ypt31 In Complex With Yeast Ra | 4e-19 | ||
| 3cwz_A | 188 | Strucure Of Rab6(Gtp)-R6ip1 Complex Length = 188 | 4e-19 | ||
| 2fe4_A | 171 | The Crystal Structure Of Human Neuronal Rab6b In It | 4e-19 | ||
| 1c1y_A | 167 | Crystal Structure Of Rap.Gmppnp In Complex With The | 5e-19 | ||
| 3bbp_A | 211 | Rab6-Gtp:gcc185 Rab Binding Domain Complex Length = | 7e-19 | ||
| 4drz_A | 196 | Crystal Structure Of Human Rab14 Length = 196 | 7e-19 | ||
| 1z08_A | 170 | Gppnhp-Bound Rab21 Q53g Mutant Gtpase Length = 170 | 9e-19 | ||
| 2il1_A | 192 | Crystal Structure Of A Predicted Human Gtpase In Co | 1e-18 | ||
| 3l0i_B | 199 | Complex Structure Of Sidm/drra With The Wild Type R | 1e-18 | ||
| 2wwx_A | 175 | Crystal Structure Of The SidmDRRA(GEFGDF DOMAIN)-Ra | 1e-18 | ||
| 1yzn_A | 185 | Gppnhp-Bound Ypt1p Gtpase Length = 185 | 1e-18 | ||
| 1gua_A | 167 | Human Rap1a, Residues 1-167, Double Mutant (E30d,K3 | 2e-18 | ||
| 2a78_A | 187 | Crystal Structure Of The C3bot-Rala Complex Reveals | 2e-18 | ||
| 1uad_A | 175 | Crystal Structure Of The Rala-gppnhp-sec5 Ral-bindi | 2e-18 | ||
| 2if0_A | 200 | Crystal Structure Of Mouse Rab27b Bound To Gdp In M | 2e-18 | ||
| 2eqb_A | 174 | Crystal Structure Of The Rab Gtpase Sec4p, The Sec2 | 2e-18 | ||
| 2g6b_A | 180 | Crystal Structure Of Human Rab26 In Complex With A | 3e-18 | ||
| 1ky2_A | 182 | Gppnhp-Bound Ypt7p At 1.6 A Resolution Length = 182 | 3e-18 | ||
| 3cph_A | 213 | Crystal Structure Of Sec4 In Complex With Rab-Gdi L | 3e-18 | ||
| 1ukv_Y | 206 | Structure Of Rabgdp-Dissociation Inhibitor In Compl | 3e-18 | ||
| 1g17_A | 170 | Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma) | 3e-18 | ||
| 3rab_A | 169 | Gppnhp-bound Rab3a At 2.0 A Resolution Length = 169 | 3e-18 | ||
| 2bcg_Y | 206 | Structure Of Doubly Prenylated Ypt1:gdi Complex Len | 3e-18 | ||
| 2oil_A | 193 | Crystal Structure Of Human Rab25 In Complex With Gd | 3e-18 | ||
| 3tso_A | 178 | Structure Of The Cancer Associated Rab25 Protein In | 3e-18 | ||
| 1u8y_A | 168 | Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal | 3e-18 | ||
| 2bov_A | 206 | Molecular Recognition Of An Adp-Ribosylating Clostr | 4e-18 | ||
| 2iez_A | 220 | Crystal Structure Of Mouse Rab27b Bound To Gdp In M | 5e-18 | ||
| 1yzt_A | 184 | Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution Leng | 6e-18 | ||
| 2ocy_C | 170 | Complex Of The Guanine Exchange Factor Sec2p And Th | 6e-18 | ||
| 3rwm_B | 185 | Crystal Structure Of Ypt32 In Complex With Gppnhp L | 6e-18 | ||
| 1yzu_A | 170 | Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution Leng | 7e-18 | ||
| 3brw_D | 167 | Structure Of The Rap-Rapgap Complex Length = 167 | 7e-18 | ||
| 1g16_A | 170 | Crystal Structure Of Sec4-Gdp Length = 170 | 8e-18 | ||
| 2p5s_A | 199 | Rab Domain Of Human Rasef In Complex With Gdp Lengt | 1e-17 | ||
| 3a58_B | 188 | Crystal Structure Of Sec3p - Rho1p Complex From Sac | 2e-17 | ||
| 1zc3_A | 175 | Crystal Structure Of The Ral-Binding Domain Of Exo8 | 2e-17 | ||
| 2iey_A | 195 | Crystal Structure Of Mouse Rab27b Bound To Gdp In H | 2e-17 | ||
| 2zet_A | 203 | Crystal Structure Of The Small Gtpase Rab27b Comple | 2e-17 | ||
| 1z06_A | 189 | Gppnhp-Bound Rab33 Gtpase Length = 189 | 7e-17 | ||
| 4dxa_A | 169 | Co-Crystal Structure Of Rap1 In Complex With Krit1 | 8e-17 | ||
| 2j1l_A | 214 | Crystal Structure Of Human Rho-Related Gtp-Binding | 1e-16 | ||
| 3dz8_A | 191 | Crystal Structure Of Human Rab3b Gtpase Bound With | 2e-16 | ||
| 1zbd_A | 203 | Structural Basis Of Rab Effector Specificity: Cryst | 3e-16 | ||
| 2kwi_A | 178 | Ralb-Rlip76 (Ralbp1) Complex Length = 178 | 3e-16 | ||
| 2ke5_A | 174 | Solution Structure And Dynamics Of The Small Gtpase | 3e-16 | ||
| 2gf9_A | 189 | Crystal Structure Of Human Rab3d In Complex With Gd | 4e-16 | ||
| 1yvd_A | 169 | Gppnhp-Bound Rab22 Gtpase Length = 169 | 5e-16 | ||
| 1agp_A | 166 | Three-Dimensional Structures And Properties Of A Tr | 9e-16 | ||
| 2fg5_A | 192 | Crystal Structure Of Human Rab31 In Complex With A | 9e-16 | ||
| 2g77_B | 198 | Crystal Structure Of Gyp1 Tbc Domain In Complex Wit | 9e-16 | ||
| 1jah_A | 166 | H-Ras P21 Protein Mutant G12p, Complexed With Guano | 1e-15 | ||
| 1clu_A | 166 | H-Ras Complexed With Diaminobenzophenone-Beta,Gamma | 1e-15 | ||
| 421p_A | 166 | Three-Dimensional Structures Of H-Ras P21 Mutants: | 2e-15 | ||
| 1tx4_B | 177 | RhoRHOGAPGDP(DOT)ALF4 COMPLEX Length = 177 | 3e-15 | ||
| 3msx_A | 180 | Crystal Structure Of Rhoa.Gdp.Mgf3 In Complex With | 3e-15 | ||
| 1xcg_B | 178 | Crystal Structure Of Human Rhoa In Complex With DhP | 3e-15 | ||
| 4epr_A | 170 | Discovery Of Small Molecules That Bind To K-Ras And | 4e-15 | ||
| 4dso_A | 189 | Small-Molecule Ligands Bind To A Distinct Pocket In | 4e-15 | ||
| 1ow3_B | 193 | Crystal Structure Of Rhoa.Gdp.Mgf3-In Complex With | 4e-15 | ||
| 1cc0_A | 190 | Crystal Structure Of The Rhoa.Gdp-Rhogdi Complex Le | 5e-15 | ||
| 3lw8_A | 185 | Shigella Ipgb2 In Complex With Human Rhoa, Gdp And | 5e-15 | ||
| 1s1c_A | 183 | Crystal Structure Of The Complex Between The Human | 6e-15 | ||
| 3bc1_A | 195 | Crystal Structure Of The Complex Rab27a-slp2a Lengt | 6e-15 | ||
| 3kz1_E | 182 | Crystal Structure Of The Complex Of Pdz-Rhogef DhPH | 7e-15 | ||
| 1lb1_B | 192 | Crystal Structure Of The Dbl And Pleckstrin Homolog | 7e-15 | ||
| 3tvd_A | 193 | Crystal Structure Of Mouse Rhoa-Gtp Complex Length | 8e-15 | ||
| 1z0j_A | 170 | Structure Of Gtp-Bound Rab22q64l Gtpase In Complex | 8e-15 | ||
| 1x86_B | 196 | Crystal Structure Of The DhPH DOMAINS OF LEUKEMIA-A | 9e-15 | ||
| 4f38_A | 195 | Crystal Structure Of Geranylgeranylated Rhoa In Com | 9e-15 | ||
| 1z2c_A | 193 | Crystal Structure Of Mdia1 Gbd-Fh3 In Complex With | 2e-14 | ||
| 1kmq_A | 184 | Crystal Structure Of A Constitutively Activated Rho | 2e-14 | ||
| 3clv_A | 208 | Crystal Structure Of Rab5a From Plasmodium Falcipar | 2e-14 | ||
| 4fmc_F | 117 | Espg-Rab1 Complex Length = 117 | 3e-14 | ||
| 2gcn_A | 201 | Crystal Structure Of The Human Rhoc-Gdp Complex Len | 3e-14 | ||
| 1cxz_A | 182 | Crystal Structure Of Human Rhoa Complexed With The | 5e-14 | ||
| 2fv8_A | 207 | The Crystal Structure Of Rhob In The Gdp-Bound Stat | 6e-14 | ||
| 1dpf_A | 180 | Crystal Structure Of A Mg-Free Form Of Rhoa Complex | 6e-14 | ||
| 1mh1_A | 186 | Small G-Protein Length = 186 | 8e-14 | ||
| 2h7v_A | 188 | Co-crystal Structure Of Ypka-rac1 Length = 188 | 8e-14 | ||
| 1g4u_R | 184 | Crystal Structure Of The Salmonella Tyrosine Phosph | 9e-14 | ||
| 1hh4_A | 192 | Rac1-Rhogdi Complex Involved In Nadph Oxidase Activ | 1e-13 | ||
| 3sbd_A | 187 | Crystal Structure Of Rac1 P29s Mutant Length = 187 | 2e-13 | ||
| 2fju_A | 178 | Activated Rac1 Bound To Its Effector Phospholipase | 3e-13 | ||
| 2yin_C | 196 | Structure Of The Complex Between Dock2 And Rac1. Le | 3e-13 | ||
| 2vrw_A | 184 | Critical Structural Role For The Ph And C1 Domains | 3e-13 | ||
| 1he1_C | 176 | Crystal Structure Of The Complex Between The Gap Do | 3e-13 | ||
| 3sua_A | 184 | Crystal Structure Of The Intracellular Domain Of Pl | 3e-13 | ||
| 1foe_B | 177 | Crystal Structure Of Rac1 In Complex With The Guani | 3e-13 | ||
| 3th5_A | 204 | Crystal Structure Of Wild-Type Rac1 Length = 204 | 3e-13 | ||
| 1i4d_D | 192 | Crystal Structure Analysis Of Rac1-Gdp Complexed Wi | 3e-13 | ||
| 2gco_A | 201 | Crystal Structure Of The Human Rhoc-gppnhp Complex | 4e-13 | ||
| 1ds6_A | 192 | Crystal Structure Of A Rac-Rhogdi Complex Length = | 5e-13 | ||
| 3b13_B | 184 | Crystal Structure Of The Dhr-2 Domain Of Dock2 In C | 1e-12 | ||
| 4gzm_A | 204 | Crystal Structure Of Rac1 F28l Mutant Length = 204 | 1e-12 | ||
| 3bwd_D | 182 | Crystal Structure Of The Plant Rho Protein Rop5 Len | 1e-12 | ||
| 3ryt_C | 180 | The Plexin A1 Intracellular Region In Complex With | 2e-12 | ||
| 4gzl_A | 204 | Crystal Structure Of Rac1 Q61l Mutant Length = 204 | 2e-12 | ||
| 2ic5_A | 180 | Crystal Structure Of Human Rac3 Grown In The Presen | 2e-12 | ||
| 1e96_A | 192 | Structure Of The RacP67PHOX COMPLEX Length = 192 | 2e-12 | ||
| 2j0v_A | 212 | The Crystal Structure Of Arabidopsis Thaliana Rac7- | 2e-12 | ||
| 2g0n_A | 179 | The Crystal Structure Of The Human Rac3 In Complex | 2e-12 | ||
| 1i4t_D | 192 | Crystal Structure Analysis Of Rac1-Gmppnp In Comple | 2e-12 | ||
| 2c2h_A | 192 | Crystal Structure Of The Human Rac3 In Complex With | 3e-12 | ||
| 2ery_A | 172 | The Crystal Structure Of The Ras Related Protein Rr | 3e-12 | ||
| 2fn4_A | 181 | The Crystal Structure Of Human Ras-Related Protein, | 4e-12 | ||
| 2w2v_A | 184 | Rac2 (G12v) In Complex With Gtpgs Length = 184 | 7e-12 | ||
| 2nty_C | 180 | Rop4-Gdp-Prone8 Length = 180 | 7e-12 | ||
| 3ddc_A | 166 | Crystal Structure Of Nore1a In Complex With Ras Len | 7e-12 | ||
| 2w2t_A | 185 | Rac2 (G12v) In Complex With Gdp Length = 185 | 7e-12 | ||
| 2hxs_A | 178 | Crystal Structure Of Rab28a Gtpase In The Inactive | 8e-12 | ||
| 2erx_A | 172 | Crystal Structure Of Diras2 In Complex With Gdp And | 8e-12 | ||
| 3kko_A | 183 | Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX | 9e-12 | ||
| 221p_A | 166 | Three-Dimensional Structures Of H-Ras P21 Mutants: | 1e-11 | ||
| 1lfd_B | 167 | Crystal Structure Of The Active Ras Protein Complex | 1e-11 | ||
| 2wbl_C | 180 | Three-Dimensional Structure Of A Binary Rop-Prone C | 1e-11 | ||
| 3kkm_A | 172 | Crystal Structure Of H-Ras T35s In Complex With Gpp | 2e-11 | ||
| 2cld_X | 166 | Crystal Structure Analysis Of A Fluorescent Form Of | 2e-11 | ||
| 4efm_A | 171 | Crystal Structure Of H-Ras G12v In Complex With Gpp | 2e-11 | ||
| 4efl_A | 171 | Crystal Structure Of H-Ras Wt In Complex With Gppnh | 2e-11 | ||
| 3pir_A | 183 | Crystal Structure Of M-Rasd41e In Complex With Gppn | 2e-11 | ||
| 2wkq_A | 332 | Structure Of A Photoactivatable Rac1 Containing The | 2e-11 | ||
| 2wkr_A | 332 | Structure Of A Photoactivatable Rac1 Containing The | 2e-11 | ||
| 3kkp_A | 183 | Crystal Structure Of M-Ras P40d In Complex With Gpp | 2e-11 | ||
| 1wq1_R | 166 | Ras-Rasgap Complex Length = 166 | 3e-11 | ||
| 1rvd_A | 166 | H-Ras Complexed With Diaminobenzophenone-Beta,Gamma | 3e-11 | ||
| 2wkp_A | 332 | Structure Of A Photoactivatable Rac1 Containing Lov | 3e-11 | ||
| 2c5l_A | 173 | Structure Of Plc Epsilon Ras Association Domain Wit | 3e-11 | ||
| 1x1r_A | 178 | Crystal Structure Of M-Ras In Complex With Gdp Leng | 3e-11 | ||
| 3v4f_A | 166 | H-Ras Peg 400CACL2, ORDERED OFF Length = 166 | 3e-11 | ||
| 4q21_A | 189 | Molecular Switch For Signal Transduction: Structura | 3e-11 | ||
| 6q21_A | 171 | Molecular Switch For Signal Transduction: Structura | 3e-11 | ||
| 2q21_A | 171 | Crystal Structures At 2.2 Angstroms Resolution Of T | 3e-11 | ||
| 3i3s_R | 166 | Crystal Structure Of H-Ras With Thr50 Replaced By I | 4e-11 | ||
| 3lo5_A | 166 | Crystal Structure Of The Dominant Negative S17n Mut | 4e-11 | ||
| 2x1v_A | 166 | Crystal Structure Of The Activating H-Ras I163f Mut | 5e-11 | ||
| 2quz_A | 166 | Crystal Structure Of The Activating H-Rask117r Muta | 5e-11 | ||
| 1iaq_A | 166 | C-H-Ras P21 Protein Mutant With Thr 35 Replaced By | 5e-11 | ||
| 2cl0_X | 166 | Crystal Structure Analysis Of A Fluorescent Form Of | 7e-11 | ||
| 3k9n_A | 166 | Allosteric Modulation Of H-Ras Gtpase Length = 166 | 7e-11 | ||
| 1xj0_A | 166 | Crystal Structure Of The Gdp-Bound Form Of The Rasg | 8e-11 | ||
| 3ref_B | 194 | Crystal Structure Of Ehrho1 Bound To Gdp And Magnes | 8e-11 | ||
| 1xcm_A | 167 | Crystal Structure Of The Gppnhp-Bound H-Ras G60a Mu | 8e-11 | ||
| 1nvv_Q | 166 | Structural Evidence For Feedback Activation By Rasg | 8e-11 | ||
| 521p_A | 166 | Three-Dimensional Structures Of H-Ras P21 Mutants: | 9e-11 | ||
| 4epx_A | 170 | Discovery Of Small Molecules That Bind To K-Ras And | 9e-11 | ||
| 4ept_A | 170 | Discovery Of Small Molecules That Bind To K-Ras And | 9e-11 | ||
| 1lf0_A | 166 | Crystal Structure Of Rasa59g In The Gtp-Bound Form | 9e-11 | ||
| 4dvg_A | 188 | Crystal Structure Of E. Histolytica Formin1 Bound T | 1e-10 | ||
| 2rgb_A | 166 | Crystal Structure Of H-Rasq61k-Gppnhp Length = 166 | 1e-10 | ||
| 621p_A | 166 | Three-Dimensional Structures Of H-Ras P21 Mutants: | 1e-10 | ||
| 1zw6_A | 166 | Crystal Structure Of The Gtp-Bound Form Of Rasq61g | 2e-10 | ||
| 4efn_A | 171 | Crystal Structure Of H-Ras Q61l In Complex With Gpp | 2e-10 | ||
| 2rgc_A | 166 | Crystal Structure Of H-Rasq61v-Gppnhp Length = 166 | 2e-10 | ||
| 721p_A | 166 | Three-Dimensional Structures Of H-Ras P21 Mutants: | 2e-10 | ||
| 1zvq_A | 166 | Structure Of The Q61g Mutant Of Ras In The Gdp-Boun | 2e-10 | ||
| 2rga_A | 166 | Crystal Structure Of H-Rasq61i-Gppnhp Length = 166 | 3e-10 | ||
| 3con_A | 190 | Crystal Structure Of The Human Nras Gtpase Bound Wi | 3e-10 | ||
| 4did_A | 193 | Crystal Structure Of Salmonella Effector N-Terminal | 3e-10 | ||
| 3rap_R | 167 | The Small G Protein Rap2 In A Non Catalytic Complex | 3e-10 | ||
| 1am4_D | 177 | Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. S | 3e-10 | ||
| 1cee_A | 179 | Solution Structure Of Cdc42 In Complex With The Gtp | 4e-10 | ||
| 1kz7_B | 188 | Crystal Structure Of The DhPH FRAGMENT OF MURINE DB | 4e-10 | ||
| 1aje_A | 194 | Cdc42 From Human, Nmr, 20 Structures Length = 194 | 4e-10 | ||
| 3gcg_A | 182 | Crystal Structure Of Map And Cdc42 Complex Length = | 4e-10 | ||
| 3eg5_A | 178 | Crystal Structure Of Mdia1-Tsh Gbd-Fh3 In Complex W | 4e-10 | ||
| 2odb_A | 192 | The Crystal Structure Of Human Cdc42 In Complex Wit | 4e-10 | ||
| 1ees_A | 178 | Solution Structure Of Cdc42hs Complexed With A Pept | 4e-10 | ||
| 1grn_A | 191 | Crystal Structure Of The Cdc42CDC42GAPALF3 COMPLEX. | 4e-10 | ||
| 1gzs_A | 180 | Crystal Structure Of The Complex Between The Gef Do | 4e-10 | ||
| 2wm9_B | 190 | Structure Of The Complex Between Dock9 And Cdc42. L | 4e-10 | ||
| 1doa_A | 191 | Structure Of The Rho Family Gtp-Binding Protein Cdc | 4e-10 | ||
| 2dfk_B | 194 | Crystal Structure Of The Cdc42-Collybistin Ii Compl | 4e-10 | ||
| 2qrz_A | 189 | Cdc42 Bound To Gmp-Pcp: Induced Fit By Effector Is | 4e-10 | ||
| 1an0_A | 190 | Cdc42hs-Gdp Complex Length = 190 | 4e-10 | ||
| 3gft_A | 187 | Human K-Ras In Complex With A Gtp Analogue Length = | 5e-10 | ||
| 1ryf_A | 203 | Alternative Splicing Of Rac1 Generates Rac1b, A Sel | 5e-10 | ||
| 2v55_B | 200 | Mechanism Of Multi-site Phosphorylation From A Rock | 7e-10 | ||
| 1gwn_A | 205 | The Crystal Structure Of The Core Domain Of RhoeRND | 8e-10 | ||
| 1m7b_A | 184 | Crystal Structure Of Rnd3RHOE: FUNCTIONAL IMPLICATI | 8e-10 | ||
| 3qbv_A | 178 | Structure Of Designed Orthogonal Interaction Betwee | 1e-09 | ||
| 2kb0_A | 178 | Cdc42(T35a) Length = 178 | 1e-09 | ||
| 3vhl_B | 195 | Crystal Structure Of The Dhr-2 Domain Of Dock8 In C | 1e-09 | ||
| 2q3h_A | 201 | The Crystal Structure Of Rhoua In The Gdp-bound Sta | 1e-09 | ||
| 2ase_A | 178 | Nmr Structure Of The F28l Mutant Of Cdc42hs Length | 2e-09 | ||
| 1cf4_A | 184 | Cdc42ACK GTPASE-Binding Domain Complex Length = 184 | 2e-09 | ||
| 2atx_A | 194 | Crystal Structure Of The Tc10 Gppnhp Complex Length | 2e-09 | ||
| 1nf3_A | 195 | Structure Of Cdc42 In A Complex With The Gtpase-Bin | 3e-09 | ||
| 1a4r_B | 191 | G12v Mutant Of Human Placental Cdc42 Gtpase In The | 4e-09 | ||
| 3cbq_A | 195 | Crystal Structure Of The Human Rem2 Gtpase With Bou | 3e-08 | ||
| 2gf0_A | 199 | The Crystal Structure Of The Human Diras1 Gtpase In | 5e-08 | ||
| 2atv_A | 196 | The Crystal Structure Of Human Rerg In The Gdp Boun | 7e-08 | ||
| 1xtq_A | 177 | Structure Of Small Gtpase Human Rheb In Complex Wit | 1e-07 | ||
| 2l0x_A | 169 | Solution Structure Of The 21 Kda Gtpase Rheb Bound | 1e-07 | ||
| 3t5g_A | 181 | Structure Of Fully Modified Farnesylated Rheb In Co | 1e-07 | ||
| 3oes_A | 201 | Crystal Structure Of The Small Gtpase Rhebl1 Length | 1e-07 | ||
| 2yc2_C | 208 | Intraflagellar Transport Complex 25-27 From Chlamyd | 7e-07 | ||
| 2al7_A | 186 | Structure Of Human Adp-Ribosylation Factor-Like 10c | 8e-07 | ||
| 3q3j_B | 214 | Crystal Structure Of Plexin A2 Rbd In Complex With | 8e-07 | ||
| 2cls_A | 198 | The Crystal Structure Of The Human Rnd1 Gtpase In T | 8e-07 | ||
| 2rex_B | 197 | Crystal Structure Of The Effector Domain Of Plxnb1 | 9e-07 | ||
| 3sea_A | 167 | Structure Of Rheb-Y35a Mutant In Gdp- And Gmppnp-Bo | 1e-06 | ||
| 2cjw_B | 192 | Crystal Structure Of The Small Gtpase Gem (Gemdndca | 2e-06 | ||
| 2cjw_A | 192 | Crystal Structure Of The Small Gtpase Gem (Gemdndca | 2e-06 | ||
| 3q85_A | 169 | Crystal Structure Of Rem2 G-Domain -Gtp Analog Comp | 2e-06 | ||
| 4aii_A | 180 | Crystal Structure Of The Rat Rem2 Gtpase - G Domain | 3e-06 | ||
| 1zd9_A | 188 | Structure Of Human Adp-Ribosylation Factor-Like 10b | 6e-06 | ||
| 2h18_A | 193 | Structure Of Human Adp-Ribosylation Factor-Like 10b | 6e-06 | ||
| 2g3y_A | 211 | Crystal Structure Of The Human Small Gtpase Gem Len | 1e-05 | ||
| 2ht6_A | 174 | Crystal Structure Of Human Gem G-Domain Bound To Gd | 1e-05 | ||
| 1zj6_A | 187 | Crystal Structure Of Human Arl5 Length = 187 | 6e-05 | ||
| 1z6y_A | 179 | Structure Of Human Adp-Ribosylation Factor-Like 5 L | 6e-05 | ||
| 1z6x_A | 180 | Structure Of Human Adp-Ribosylation Factor 4 Length | 6e-05 | ||
| 2h16_A | 183 | Structure Of Human Adp-Ribosylation Factor-Like 5 ( | 1e-04 | ||
| 3ihw_A | 184 | Crystal Structure Of The Ras-Like Domain Of Centg3 | 2e-04 | ||
| 2h17_A | 181 | Structure Of Human Adp-Ribosylation Factor-Like 5 ( | 2e-04 | ||
| 2nzj_A | 175 | The Crystal Structure Of Rem1 In Complex With Gdp L | 2e-04 | ||
| 3lrp_A | 181 | Crystal Structure Of Plasmodium Falciparum Adp-Ribo | 3e-04 | ||
| 1re0_A | 164 | Structure Of Arf1-Gdp Bound To Sec7 Domain Complexe | 3e-04 | ||
| 1rrg_A | 181 | Non-Myristoylated Rat Adp-Ribosylation Factor-1 Com | 3e-04 | ||
| 1hur_A | 180 | Human Adp-Ribosylation Factor 1 Complexed With Gdp, | 3e-04 | ||
| 1mr3_F | 181 | Saccharomyces Cerevisiae Adp-Ribosylation Factor 2 | 4e-04 | ||
| 3rd1_A | 178 | Structure Of An Adp Ribosylation Factor From Entamo | 5e-04 | ||
| 3o47_A | 329 | Crystal Structure Of Arfgap1-Arf1 Fusion Protein Le | 5e-04 | ||
| 3dpu_A | 535 | Roccor Domain Tandem Of Rab Family Protein (Roco) L | 5e-04 | ||
| 2gjs_A | 176 | The Crystal Structure Of Human Rrad In Complex With | 5e-04 | ||
| 3tjz_A | 164 | Crystal Structure Of Arf1 Bound To The GammaZETA-Co | 5e-04 | ||
| 2k5u_A | 181 | Solution Structure Of Myirstoylated Yeast Arf1 Prot | 5e-04 | ||
| 2dpx_A | 174 | Crystal Structure Of Human Rad Gtpase Length = 174 | 5e-04 | ||
| 1j2j_A | 166 | Crystal Structure Of Gga1 Gat N-terminal Region In | 6e-04 | ||
| 2ksq_A | 181 | The Myristoylated Yeast Arf1 In A Gtp And Bicelle B | 7e-04 | ||
| 2h57_A | 190 | Crystal Structure Of Human Adp-Ribosylation Factor- | 8e-04 | ||
| 2b6h_A | 192 | Structure Of Human Adp-Ribosylation Factor 5 Length | 9e-04 |
| >pdb|3M1I|A Chain A, Crystal Structure Of Yeast Crm1 (Xpo1p) In Complex With Yeas (Yrb1p) And Yeast Rangtp (Gsp1pgtp) Length = 219 | Back alignment and structure |
|
| >pdb|3ICQ|B Chain B, Karyopherin Nuclear State Length = 171 | Back alignment and structure |
|
| >pdb|2X19|A Chain A, Crystal Structure Of Importin13 - Rangtp Complex Length = 172 | Back alignment and structure |
|
| >pdb|1BYU|A Chain A, Canine Gdp-Ran Length = 216 | Back alignment and structure |
|
| >pdb|2BKU|A Chain A, Kap95p:rangtp Complex Length = 177 | Back alignment and structure |
|
| >pdb|1A2K|C Chain C, Gdpran-Ntf2 Complex Length = 216 | Back alignment and structure |
|
| >pdb|3GJ0|A Chain A, Crystal Structure Of Human Rangdp Length = 221 | Back alignment and structure |
|
| >pdb|1RRP|A Chain A, Structure Of The Ran-Gppnhp-Ranbd1 Complex Length = 204 | Back alignment and structure |
|
| >pdb|3EA5|A Chain A, Kap95p Binding Induces The Switch Loops Of Rangdp To Adopt The Gtp- Bound Conformation: Implications For Nuclear Import Complex Assembly Dynamics Length = 216 | Back alignment and structure |
|
| >pdb|1QG4|A Chain A, Canine Gdp-Ran F72y Mutant Length = 216 | Back alignment and structure |
|
| >pdb|1QG2|A Chain A, Canine Gdp-Ran R76e Mutant Length = 216 | Back alignment and structure |
|
| >pdb|1WA5|A Chain A, Crystal Structure Of The Exportin Cse1p Complexed With Its Cargo (Kap60p) And Rangtp Length = 176 | Back alignment and structure |
|
| >pdb|3RAN|A Chain A, Canine Gdp-Ran Q69l Mutant Length = 216 | Back alignment and structure |
|
| >pdb|3GJ4|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf3 Complex Length = 221 | Back alignment and structure |
|
| >pdb|1QBK|C Chain C, Structure Of The Karyopherin Beta2-ran Gppnhp Nuclear Transport Complex Length = 216 | Back alignment and structure |
|
| >pdb|3NC1|C Chain C, Crystal Structure Of The Crm1-Rangtp Complex Length = 182 | Back alignment and structure |
|
| >pdb|3NBY|C Chain C, Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclear Export Complex Length = 176 | Back alignment and structure |
|
| >pdb|4DJT|A Chain A, Crystal Structure Of A Nuclear Gtp-Binding Protein From Encephalitozoon Cuniculi Bound To Gdp-Mg2+ Length = 218 | Back alignment and structure |
|
| >pdb|1VG1|A Chain A, Gdp-bound Rab7 Length = 185 | Back alignment and structure |
|
| >pdb|1VG0|B Chain B, The Crystal Structures Of The Rep-1 Protein In Complex With Monoprenylated Rab7 Protein Length = 207 | Back alignment and structure |
|
| >pdb|3LAW|A Chain A, Structure Of Gtp-Bound L129f Mutant Rab7 Length = 207 | Back alignment and structure |
|
| >pdb|1T91|A Chain A, Crystal Structure Of Human Small Gtpase Rab7(Gtp) Length = 207 | Back alignment and structure |
|
| >pdb|2EW1|A Chain A, Crystal Structure Of Rab30 In Complex With A Gtp Analogue Length = 201 | Back alignment and structure |
|
| >pdb|2HEI|A Chain A, Crystal Structure Of Human Rab5b In Complex With Gdp Length = 179 | Back alignment and structure |
|
| >pdb|1YZL|A Chain A, Gppnhp-Bound Rab9 Gtpase Length = 179 | Back alignment and structure |
|
| >pdb|1Z22|A Chain A, Gdp-Bound Rab23 Gtpase Crystallized In C222(1) Space Group Length = 168 | Back alignment and structure |
|
| >pdb|1WMS|A Chain A, High Resolution Crystal Structure Of Human Rab9 Gtpase: A Novel Antiviral Drug Target Length = 177 | Back alignment and structure |
|
| >pdb|1TU3|A Chain A, Crystal Structure Of Rab5 Complex With Rabaptin5 C-Terminal Domain Length = 171 | Back alignment and structure |
|
| >pdb|1N6H|A Chain A, Crystal Structure Of Human Rab5a Length = 170 | Back alignment and structure |
|
| >pdb|1S8F|A Chain A, Crystal Structure Of Rab9 Complexed To Gdp Reveals A Dimer With An Active Conformation Of Switch Ii Length = 177 | Back alignment and structure |
|
| >pdb|1HUQ|A Chain A, 1.8a Crystal Structure Of The Monomeric Gtpase Rab5c (Mouse) Length = 164 | Back alignment and structure |
|
| >pdb|2F9L|A Chain A, 3d Structure Of Inactive Human Rab11b Gtpase Length = 199 | Back alignment and structure |
|
| >pdb|1N6O|A Chain A, Crystal Structure Of Human Rab5a A30k Mutant Complex With Gppnhp Length = 170 | Back alignment and structure |
|
| >pdb|1N6P|A Chain A, Crystal Structure Of Human Rab5a A30e Mutant Complex With Gppnhp Length = 170 | Back alignment and structure |
|
| >pdb|1N6N|A Chain A, Crystal Structure Of Human Rab5a A30r Mutant Complex With Gppnhp Length = 170 | Back alignment and structure |
|
| >pdb|1N6I|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With Gdp Length = 170 | Back alignment and structure |
|
| >pdb|1N6R|A Chain A, Crystal Structure Of Human Rab5a A30l Mutant Complex With Gppnhp Length = 170 | Back alignment and structure |
|
| >pdb|1TU4|A Chain A, Crystal Structure Of Rab5-Gdp Complex Length = 171 | Back alignment and structure |
|
| >pdb|2HUP|A Chain A, Crystal Structure Of Human Rab43 In Complex With Gdp Length = 201 | Back alignment and structure |
|
| >pdb|3MJH|A Chain A, Crystal Structure Of Human Rab5a In Complex With The C2h2 Zinc Finger Of Eea1 Length = 168 | Back alignment and structure |
|
| >pdb|1YZK|A Chain A, Gppnhp Bound Rab11 Gtpase Length = 184 | Back alignment and structure |
|
| >pdb|1OIV|A Chain A, X-Ray Structure Of The Small G Protein Rab11a In Complex With Gdp Length = 191 | Back alignment and structure |
|
| >pdb|2EFC|B Chain B, Ara7-GdpATVPS9A Length = 181 | Back alignment and structure |
|
| >pdb|3TW8|B Chain B, Gef Domain Of Dennd 1b In Complex With Rab Gtpase Rab35 Length = 181 | Back alignment and structure |
|
| >pdb|1Z07|A Chain A, Gppnhp-Bound Rab5c G55q Mutant Gtpase Length = 166 | Back alignment and structure |
|
| >pdb|1Z0D|A Chain A, Gdp-bound Rab5c Gtpase Length = 167 | Back alignment and structure |
|
| >pdb|2OCB|A Chain A, Crystal Structure Of Human Rab9b In Complex With A Gtp Analogue Length = 180 | Back alignment and structure |
|
| >pdb|2O52|A Chain A, Crystal Structure Of Human Rab4b In Complex With Gdp Length = 200 | Back alignment and structure |
|
| >pdb|2BMD|A Chain A, High Resolution Structure Of Gdp-Bound Human Rab4a Length = 186 | Back alignment and structure |
|
| >pdb|1EK0|A Chain A, Gppnhp-Bound Ypt51 At 1.48 A Resolution Length = 170 | Back alignment and structure |
|
| >pdb|2HV8|A Chain A, Crystal Structure Of Gtp-Bound Rab11 In Complex With Fip3 Length = 172 | Back alignment and structure |
|
| >pdb|1OIW|A Chain A, X-ray Structure Of The Small G Protein Rab11a In Complex With Gtpgammas Length = 191 | Back alignment and structure |
|
| >pdb|1Z0A|A Chain A, Gdp-Bound Rab2a Gtpase Length = 174 | Back alignment and structure |
|
| >pdb|1YU9|A Chain A, Gppnhp-Bound Rab4a Length = 175 | Back alignment and structure |
|
| >pdb|2GZD|A Chain A, Crystal Structure Of Rab11 In Complex With Rab11-Fip2 Length = 173 | Back alignment and structure |
|
| >pdb|2D7C|A Chain A, Crystal Structure Of Human Rab11 In Complex With Fip3 Rab- Binding Domain Length = 167 | Back alignment and structure |
|
| >pdb|3JZA|A Chain A, Crystal Structure Of Human Rab1b In Complex With The Gef Domain Of DrraSIDM FROM LEGIONELLA PNEUMOPHILA Length = 175 | Back alignment and structure |
|
| >pdb|4I1O|A Chain A, Crystal Structure Of The Legionella Pneumophila Gap Domain Of Lepb In Complex With Rab1b Bound To Gdp And Bef3 Length = 181 | Back alignment and structure |
|
| >pdb|1YZQ|A Chain A, Gppnhp-Bound Rab6 Gtpase Length = 170 | Back alignment and structure |
|
| >pdb|1D5C|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab6 Complexed With Gdp Length = 162 | Back alignment and structure |
|
| >pdb|2Y8E|A Chain A, Crystal Structure Of D. Melanogaster Rab6 Gtpase Bound To Gmppnp Length = 179 | Back alignment and structure |
|
| >pdb|2FU5|C Chain C, Structure Of Rab8 In Complex With Mss4 Length = 183 | Back alignment and structure |
|
| >pdb|2A5J|A Chain A, Crystal Structure Of Human Rab2b Length = 191 | Back alignment and structure |
|
| >pdb|4FMB|B Chain B, Vira-Rab1 Complex Structure Length = 171 | Back alignment and structure |
|
| >pdb|3TKL|A Chain A, Crystal Structure Of The Gtp-Bound Rab1a In Complex With The Coiled- Coil Domain Of Lida From Legionella Pneumophila Length = 196 | Back alignment and structure |
|
| >pdb|1Z0F|A Chain A, Gdp-Bound Rab14 Gtpase Length = 179 | Back alignment and structure |
|
| >pdb|4FMC|B Chain B, Espg-Rab1 Complex Length = 171 | Back alignment and structure |
|
| >pdb|2FOL|A Chain A, Crystal Structure Of Human Rab1a In Complex With Gdp Length = 191 | Back alignment and structure |
|
| >pdb|1Z0K|A Chain A, Structure Of Gtp-Bound Rab4q67l Gtpase In Complex With The Central Rab Binding Domain Of Rabenosyn-5 Length = 172 | Back alignment and structure |
|
| >pdb|1X3S|A Chain A, Crystal Structure Of Human Rab18 In Complex With Gppnhp Length = 195 | Back alignment and structure |
|
| >pdb|3BFK|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab11a In Complex With Gdp Length = 181 | Back alignment and structure |
|
| >pdb|3SFV|A Chain A, Crystal Structure Of The Gdp-Bound Rab1a S25n Mutant In Complex With The Coiled-Coil Domain Of Lida From Legionella Pneumophila Length = 181 | Back alignment and structure |
|
| >pdb|3QBT|A Chain A, Crystal Structure Of Ocrl1 540-678 In Complex With Rab8a:gppnhp Length = 174 | Back alignment and structure |
|
| >pdb|2F7S|A Chain A, The Crystal Structure Of Human Rab27b Bound To Gdp Length = 217 | Back alignment and structure |
|
| >pdb|2GIL|A Chain A, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp Bound Form At 1.8 Resolution Length = 162 | Back alignment and structure |
|
| >pdb|2RHD|A Chain A, Crystal Structure Of Cryptosporidium Parvum Small Gtpase Rab1a Length = 175 | Back alignment and structure |
|
| >pdb|4DKX|A Chain A, Crystal Structure Of The Rab 6a'(Q72l) Length = 216 | Back alignment and structure |
|
| >pdb|4FMD|F Chain F, Espg-Rab1 Complex Structure At 3.05 A Length = 164 | Back alignment and structure |
|
| >pdb|3CPJ|B Chain B, Crystal Structure Of Ypt31 In Complex With Yeast Rab-Gdi Length = 223 | Back alignment and structure |
|
| >pdb|3CWZ|A Chain A, Strucure Of Rab6(Gtp)-R6ip1 Complex Length = 188 | Back alignment and structure |
|
| >pdb|2FE4|A Chain A, The Crystal Structure Of Human Neuronal Rab6b In Its Inactive Gdp-Bound Form Length = 171 | Back alignment and structure |
|
| >pdb|1C1Y|A Chain A, Crystal Structure Of Rap.Gmppnp In Complex With The Ras- Binding-Domain Of C-Raf1 Kinase (Rafrbd) Length = 167 | Back alignment and structure |
|
| >pdb|3BBP|A Chain A, Rab6-Gtp:gcc185 Rab Binding Domain Complex Length = 211 | Back alignment and structure |
|
| >pdb|4DRZ|A Chain A, Crystal Structure Of Human Rab14 Length = 196 | Back alignment and structure |
|
| >pdb|1Z08|A Chain A, Gppnhp-Bound Rab21 Q53g Mutant Gtpase Length = 170 | Back alignment and structure |
|
| >pdb|2IL1|A Chain A, Crystal Structure Of A Predicted Human Gtpase In Complex With Gdp Length = 192 | Back alignment and structure |
|
| >pdb|3L0I|B Chain B, Complex Structure Of Sidm/drra With The Wild Type Rab1 Length = 199 | Back alignment and structure |
|
| >pdb|2WWX|A Chain A, Crystal Structure Of The SidmDRRA(GEFGDF DOMAIN)-Rab1 (Gtpase Domain) Complex Length = 175 | Back alignment and structure |
|
| >pdb|1YZN|A Chain A, Gppnhp-Bound Ypt1p Gtpase Length = 185 | Back alignment and structure |
|
| >pdb|1GUA|A Chain A, Human Rap1a, Residues 1-167, Double Mutant (E30d,K31e) Complexed With Gppnhp And The Ras-Binding-Domain Of Human C-Raf1, Residues 51-131 Length = 167 | Back alignment and structure |
|
| >pdb|2A78|A Chain A, Crystal Structure Of The C3bot-Rala Complex Reveals A Novel Type Of Action Of A Bacterial Exoenzyme Length = 187 | Back alignment and structure |
|
| >pdb|1UAD|A Chain A, Crystal Structure Of The Rala-gppnhp-sec5 Ral-binding Domain Complex Length = 175 | Back alignment and structure |
|
| >pdb|2IF0|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In Monoclinic Space Group Length = 200 | Back alignment and structure |
|
| >pdb|2EQB|A Chain A, Crystal Structure Of The Rab Gtpase Sec4p, The Sec2p Gef Domain, And Phosphate Complex Length = 174 | Back alignment and structure |
|
| >pdb|2G6B|A Chain A, Crystal Structure Of Human Rab26 In Complex With A Gtp Analogue Length = 180 | Back alignment and structure |
|
| >pdb|1KY2|A Chain A, Gppnhp-Bound Ypt7p At 1.6 A Resolution Length = 182 | Back alignment and structure |
|
| >pdb|3CPH|A Chain A, Crystal Structure Of Sec4 In Complex With Rab-Gdi Length = 213 | Back alignment and structure |
|
| >pdb|1UKV|Y Chain Y, Structure Of Rabgdp-Dissociation Inhibitor In Complex With Prenylated Ypt1 Gtpase Length = 206 | Back alignment and structure |
|
| >pdb|1G17|A Chain A, Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)- Imidotriphosphate Length = 170 | Back alignment and structure |
|
| >pdb|3RAB|A Chain A, Gppnhp-bound Rab3a At 2.0 A Resolution Length = 169 | Back alignment and structure |
|
| >pdb|2BCG|Y Chain Y, Structure Of Doubly Prenylated Ypt1:gdi Complex Length = 206 | Back alignment and structure |
|
| >pdb|2OIL|A Chain A, Crystal Structure Of Human Rab25 In Complex With Gdp Length = 193 | Back alignment and structure |
|
| >pdb|3TSO|A Chain A, Structure Of The Cancer Associated Rab25 Protein In Complex With Fip2 Length = 178 | Back alignment and structure |
|
| >pdb|1U8Y|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two Novel Binding Sites That Are Also Present In Ras And Rap Length = 168 | Back alignment and structure |
|
| >pdb|2BOV|A Chain A, Molecular Recognition Of An Adp-Ribosylating Clostridium Botulinum C3 Exoenzyme By Rala Gtpase Length = 206 | Back alignment and structure |
|
| >pdb|2IEZ|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In Monoclinic Space Group Length = 220 | Back alignment and structure |
|
| >pdb|1YZT|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution Length = 184 | Back alignment and structure |
|
| >pdb|2OCY|C Chain C, Complex Of The Guanine Exchange Factor Sec2p And The Rab Gtpase Sec4p Length = 170 | Back alignment and structure |
|
| >pdb|3RWM|B Chain B, Crystal Structure Of Ypt32 In Complex With Gppnhp Length = 185 | Back alignment and structure |
|
| >pdb|1YZU|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution Length = 170 | Back alignment and structure |
|
| >pdb|3BRW|D Chain D, Structure Of The Rap-Rapgap Complex Length = 167 | Back alignment and structure |
|
| >pdb|1G16|A Chain A, Crystal Structure Of Sec4-Gdp Length = 170 | Back alignment and structure |
|
| >pdb|2P5S|A Chain A, Rab Domain Of Human Rasef In Complex With Gdp Length = 199 | Back alignment and structure |
|
| >pdb|3A58|B Chain B, Crystal Structure Of Sec3p - Rho1p Complex From Saccharomyces Cerevisiae Length = 188 | Back alignment and structure |
|
| >pdb|1ZC3|A Chain A, Crystal Structure Of The Ral-Binding Domain Of Exo84 In Complex With The Active Rala Length = 175 | Back alignment and structure |
|
| >pdb|2IEY|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In Hexagonal Space Group Length = 195 | Back alignment and structure |
|
| >pdb|2ZET|A Chain A, Crystal Structure Of The Small Gtpase Rab27b Complexed With The Slp Homology Domain Of Slac2-AMELANOPHILIN Length = 203 | Back alignment and structure |
|
| >pdb|1Z06|A Chain A, Gppnhp-Bound Rab33 Gtpase Length = 189 | Back alignment and structure |
|
| >pdb|4DXA|A Chain A, Co-Crystal Structure Of Rap1 In Complex With Krit1 Length = 169 | Back alignment and structure |
|
| >pdb|2J1L|A Chain A, Crystal Structure Of Human Rho-Related Gtp-Binding Protein Rhod Length = 214 | Back alignment and structure |
|
| >pdb|3DZ8|A Chain A, Crystal Structure Of Human Rab3b Gtpase Bound With Gdp Length = 191 | Back alignment and structure |
|
| >pdb|1ZBD|A Chain A, Structural Basis Of Rab Effector Specificity: Crystal Structure Of The Small G Protein Rab3a Complexed With The Effector Domain Of Rabphilin-3a Length = 203 | Back alignment and structure |
|
| >pdb|2KWI|A Chain A, Ralb-Rlip76 (Ralbp1) Complex Length = 178 | Back alignment and structure |
|
| >pdb|2KE5|A Chain A, Solution Structure And Dynamics Of The Small Gtpase Ralb In Its Active Conformation: Significance For Effector Protein Binding Length = 174 | Back alignment and structure |
|
| >pdb|2GF9|A Chain A, Crystal Structure Of Human Rab3d In Complex With Gdp Length = 189 | Back alignment and structure |
|
| >pdb|1YVD|A Chain A, Gppnhp-Bound Rab22 Gtpase Length = 169 | Back alignment and structure |
|
| >pdb|1AGP|A Chain A, Three-Dimensional Structures And Properties Of A Transforming And A Nontransforming Gly-12 Mutant Of P21-H-Ras Length = 166 | Back alignment and structure |
|
| >pdb|2FG5|A Chain A, Crystal Structure Of Human Rab31 In Complex With A Gtp Analogue Length = 192 | Back alignment and structure |
|
| >pdb|2G77|B Chain B, Crystal Structure Of Gyp1 Tbc Domain In Complex With Rab33 Gtpase Bound To Gdp And Alf3 Length = 198 | Back alignment and structure |
|
| >pdb|1JAH|A Chain A, H-Ras P21 Protein Mutant G12p, Complexed With Guanosine-5'- [beta,Gamma-Methylene] Triphosphate And Magnesium Length = 166 | Back alignment and structure |
|
| >pdb|1CLU|A Chain A, H-Ras Complexed With Diaminobenzophenone-Beta,Gamma-Imido- Gtp Length = 166 | Back alignment and structure |
|
| >pdb|421P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants: Molecular Basis For Their Inability To Function As Signal Switch Molecules Length = 166 | Back alignment and structure |
|
| >pdb|1TX4|B Chain B, RhoRHOGAPGDP(DOT)ALF4 COMPLEX Length = 177 | Back alignment and structure |
|
| >pdb|3MSX|A Chain A, Crystal Structure Of Rhoa.Gdp.Mgf3 In Complex With Gap Domain Of Arhgap20 Length = 180 | Back alignment and structure |
|
| >pdb|1XCG|B Chain B, Crystal Structure Of Human Rhoa In Complex With DhPH Fragment Of Pdzrhogef Length = 178 | Back alignment and structure |
|
| >pdb|4EPR|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And Inhibit Sos- Mediated Activation Length = 170 | Back alignment and structure |
|
| >pdb|4DSO|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras And Inhibit Sos-Mediated Nucleotide Exchange Activity Length = 189 | Back alignment and structure |
|
| >pdb|1OW3|B Chain B, Crystal Structure Of Rhoa.Gdp.Mgf3-In Complex With Rhogap Length = 193 | Back alignment and structure |
|
| >pdb|1CC0|A Chain A, Crystal Structure Of The Rhoa.Gdp-Rhogdi Complex Length = 190 | Back alignment and structure |
|
| >pdb|3LW8|A Chain A, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+ (Complex A) Length = 185 | Back alignment and structure |
|
| >pdb|1S1C|A Chain A, Crystal Structure Of The Complex Between The Human Rhoa And Rho-Binding Domain Of Human Rocki Length = 183 | Back alignment and structure |
|
| >pdb|3BC1|A Chain A, Crystal Structure Of The Complex Rab27a-slp2a Length = 195 | Back alignment and structure |
|
| >pdb|3KZ1|E Chain E, Crystal Structure Of The Complex Of Pdz-Rhogef DhPH DOMAINS WITH GTP- Gamma-S Activated Rhoa Length = 182 | Back alignment and structure |
|
| >pdb|1LB1|B Chain B, Crystal Structure Of The Dbl And Pleckstrin Homology Domains Of Dbs In Complex With Rhoa Length = 192 | Back alignment and structure |
|
| >pdb|3TVD|A Chain A, Crystal Structure Of Mouse Rhoa-Gtp Complex Length = 193 | Back alignment and structure |
|
| >pdb|1Z0J|A Chain A, Structure Of Gtp-Bound Rab22q64l Gtpase In Complex With The Minimal Rab Binding Domain Of Rabenosyn-5 Length = 170 | Back alignment and structure |
|
| >pdb|1X86|B Chain B, Crystal Structure Of The DhPH DOMAINS OF LEUKEMIA-Associated Rhogef In Complex With Rhoa Length = 196 | Back alignment and structure |
|
| >pdb|4F38|A Chain A, Crystal Structure Of Geranylgeranylated Rhoa In Complex With Rhogdi In Its Active Gppnhp-Bound Form Length = 195 | Back alignment and structure |
|
| >pdb|1Z2C|A Chain A, Crystal Structure Of Mdia1 Gbd-Fh3 In Complex With Rhoc- Gmppnp Length = 193 | Back alignment and structure |
|
| >pdb|1KMQ|A Chain A, Crystal Structure Of A Constitutively Activated Rhoa Mutant (Q63l) Length = 184 | Back alignment and structure |
|
| >pdb|3CLV|A Chain A, Crystal Structure Of Rab5a From Plasmodium Falciparum, Pfb0500c Length = 208 | Back alignment and structure |
|
| >pdb|4FMC|F Chain F, Espg-Rab1 Complex Length = 117 | Back alignment and structure |
|
| >pdb|2GCN|A Chain A, Crystal Structure Of The Human Rhoc-Gdp Complex Length = 201 | Back alignment and structure |
|
| >pdb|1CXZ|A Chain A, Crystal Structure Of Human Rhoa Complexed With The Effector Domain Of The Protein Kinase PknPRK1 Length = 182 | Back alignment and structure |
|
| >pdb|2FV8|A Chain A, The Crystal Structure Of Rhob In The Gdp-Bound State Length = 207 | Back alignment and structure |
|
| >pdb|1DPF|A Chain A, Crystal Structure Of A Mg-Free Form Of Rhoa Complexed With Gdp Length = 180 | Back alignment and structure |
|
| >pdb|1MH1|A Chain A, Small G-Protein Length = 186 | Back alignment and structure |
|
| >pdb|2H7V|A Chain A, Co-crystal Structure Of Ypka-rac1 Length = 188 | Back alignment and structure |
|
| >pdb|1G4U|R Chain R, Crystal Structure Of The Salmonella Tyrosine Phosphatase And Gtpase Activating Protein Sptp Bound To Rac1 Length = 184 | Back alignment and structure |
|
| >pdb|1HH4|A Chain A, Rac1-Rhogdi Complex Involved In Nadph Oxidase Activation Length = 192 | Back alignment and structure |
|
| >pdb|3SBD|A Chain A, Crystal Structure Of Rac1 P29s Mutant Length = 187 | Back alignment and structure |
|
| >pdb|2FJU|A Chain A, Activated Rac1 Bound To Its Effector Phospholipase C Beta 2 Length = 178 | Back alignment and structure |
|
| >pdb|2YIN|C Chain C, Structure Of The Complex Between Dock2 And Rac1. Length = 196 | Back alignment and structure |
|
| >pdb|2VRW|A Chain A, Critical Structural Role For The Ph And C1 Domains Of The Vav1 Exchange Factor Length = 184 | Back alignment and structure |
|
| >pdb|1HE1|C Chain C, Crystal Structure Of The Complex Between The Gap Domain Of The Pseudomonas Aeruginosa Exos Toxin And Human Rac Length = 176 | Back alignment and structure |
|
| >pdb|3SUA|A Chain A, Crystal Structure Of The Intracellular Domain Of Plexin-B1 In Complex With Rac1 Length = 184 | Back alignment and structure |
|
| >pdb|1FOE|B Chain B, Crystal Structure Of Rac1 In Complex With The Guanine Nucleotide Exchange Region Of Tiam1 Length = 177 | Back alignment and structure |
|
| >pdb|3TH5|A Chain A, Crystal Structure Of Wild-Type Rac1 Length = 204 | Back alignment and structure |
|
| >pdb|1I4D|D Chain D, Crystal Structure Analysis Of Rac1-Gdp Complexed With Arfaptin (P21) Length = 192 | Back alignment and structure |
|
| >pdb|2GCO|A Chain A, Crystal Structure Of The Human Rhoc-gppnhp Complex Length = 201 | Back alignment and structure |
|
| >pdb|1DS6|A Chain A, Crystal Structure Of A Rac-Rhogdi Complex Length = 192 | Back alignment and structure |
|
| >pdb|3B13|B Chain B, Crystal Structure Of The Dhr-2 Domain Of Dock2 In Complex With Rac1 (T17n Mutant) Length = 184 | Back alignment and structure |
|
| >pdb|4GZM|A Chain A, Crystal Structure Of Rac1 F28l Mutant Length = 204 | Back alignment and structure |
|
| >pdb|3BWD|D Chain D, Crystal Structure Of The Plant Rho Protein Rop5 Length = 182 | Back alignment and structure |
|
| >pdb|3RYT|C Chain C, The Plexin A1 Intracellular Region In Complex With Rac1 Length = 180 | Back alignment and structure |
|
| >pdb|4GZL|A Chain A, Crystal Structure Of Rac1 Q61l Mutant Length = 204 | Back alignment and structure |
|
| >pdb|2IC5|A Chain A, Crystal Structure Of Human Rac3 Grown In The Presence Of Gpp(Nh)p. Length = 180 | Back alignment and structure |
|
| >pdb|1E96|A Chain A, Structure Of The RacP67PHOX COMPLEX Length = 192 | Back alignment and structure |
|
| >pdb|2J0V|A Chain A, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9: The First Ras Superfamily Gtpase From The Plant Kingdom Length = 212 | Back alignment and structure |
|
| >pdb|2G0N|A Chain A, The Crystal Structure Of The Human Rac3 In Complex With Gdp And Chloride Length = 179 | Back alignment and structure |
|
| >pdb|1I4T|D Chain D, Crystal Structure Analysis Of Rac1-Gmppnp In Complex With Arfaptin Length = 192 | Back alignment and structure |
|
| >pdb|2C2H|A Chain A, Crystal Structure Of The Human Rac3 In Complex With Gdp Length = 192 | Back alignment and structure |
|
| >pdb|2ERY|A Chain A, The Crystal Structure Of The Ras Related Protein Rras2 (Rras2) In The Gdp Bound State Length = 172 | Back alignment and structure |
|
| >pdb|2FN4|A Chain A, The Crystal Structure Of Human Ras-Related Protein, Rras, In The Gdp- Bound State Length = 181 | Back alignment and structure |
|
| >pdb|2W2V|A Chain A, Rac2 (G12v) In Complex With Gtpgs Length = 184 | Back alignment and structure |
|
| >pdb|2NTY|C Chain C, Rop4-Gdp-Prone8 Length = 180 | Back alignment and structure |
|
| >pdb|3DDC|A Chain A, Crystal Structure Of Nore1a In Complex With Ras Length = 166 | Back alignment and structure |
|
| >pdb|2W2T|A Chain A, Rac2 (G12v) In Complex With Gdp Length = 185 | Back alignment and structure |
|
| >pdb|2HXS|A Chain A, Crystal Structure Of Rab28a Gtpase In The Inactive (Gdp-3'p- Bound) Form Length = 178 | Back alignment and structure |
|
| >pdb|2ERX|A Chain A, Crystal Structure Of Diras2 In Complex With Gdp And Inorganic Phosphate Length = 172 | Back alignment and structure |
|
| >pdb|3KKO|A Chain A, Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX WITH GP Length = 183 | Back alignment and structure |
|
| >pdb|221P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants: Molecular Basis For Their Inability To Function As Signal Switch Molecules Length = 166 | Back alignment and structure |
|
| >pdb|1LFD|B Chain B, Crystal Structure Of The Active Ras Protein Complexed With The Ras-interacting Domain Of Ralgds Length = 167 | Back alignment and structure |
|
| >pdb|2WBL|C Chain C, Three-Dimensional Structure Of A Binary Rop-Prone Complex Length = 180 | Back alignment and structure |
|
| >pdb|3KKM|A Chain A, Crystal Structure Of H-Ras T35s In Complex With Gppnhp Length = 172 | Back alignment and structure |
|
| >pdb|4EFM|A Chain A, Crystal Structure Of H-Ras G12v In Complex With Gppnhp (State 1) Length = 171 | Back alignment and structure |
|
| >pdb|4EFL|A Chain A, Crystal Structure Of H-Ras Wt In Complex With Gppnhp (State 1) Length = 171 | Back alignment and structure |
|
| >pdb|3PIR|A Chain A, Crystal Structure Of M-Rasd41e In Complex With Gppnhp (Type 1) Length = 183 | Back alignment and structure |
|
| >pdb|2WKQ|A Chain A, Structure Of A Photoactivatable Rac1 Containing The Lov2 C450a Mutant Length = 332 | Back alignment and structure |
|
| >pdb|2WKR|A Chain A, Structure Of A Photoactivatable Rac1 Containing The Lov2 C450m Mutant Length = 332 | Back alignment and structure |
|
| >pdb|3KKP|A Chain A, Crystal Structure Of M-Ras P40d In Complex With Gppnhp Length = 183 | Back alignment and structure |
|
| >pdb|1WQ1|R Chain R, Ras-Rasgap Complex Length = 166 | Back alignment and structure |
|
| >pdb|1RVD|A Chain A, H-Ras Complexed With Diaminobenzophenone-Beta,Gamma-Imido- Gtp Length = 166 | Back alignment and structure |
|
| >pdb|2WKP|A Chain A, Structure Of A Photoactivatable Rac1 Containing Lov2 Wildtype Length = 332 | Back alignment and structure |
|
| >pdb|2C5L|A Chain A, Structure Of Plc Epsilon Ras Association Domain With Hras Length = 173 | Back alignment and structure |
|
| >pdb|1X1R|A Chain A, Crystal Structure Of M-Ras In Complex With Gdp Length = 178 | Back alignment and structure |
|
| >pdb|3V4F|A Chain A, H-Ras Peg 400CACL2, ORDERED OFF Length = 166 | Back alignment and structure |
|
| >pdb|4Q21|A Chain A, Molecular Switch For Signal Transduction: Structural Differences Between Active And Inactive Forms Of Protooncogenic Ras Proteins Length = 189 | Back alignment and structure |
|
| >pdb|6Q21|A Chain A, Molecular Switch For Signal Transduction: Structural Differences Between Active And Inactive Forms Of Protooncogenic Ras Proteins Length = 171 | Back alignment and structure |
|
| >pdb|2Q21|A Chain A, Crystal Structures At 2.2 Angstroms Resolution Of The Catalytic Domains Of Normal Ras Protein And An Oncogenic Mutant Complexed With Gsp Length = 171 | Back alignment and structure |
|
| >pdb|3I3S|R Chain R, Crystal Structure Of H-Ras With Thr50 Replaced By Isoleucine Length = 166 | Back alignment and structure |
|
| >pdb|3LO5|A Chain A, Crystal Structure Of The Dominant Negative S17n Mutant Of Ras Length = 166 | Back alignment and structure |
|
| >pdb|2X1V|A Chain A, Crystal Structure Of The Activating H-Ras I163f Mutant In Costello Syndrome, Bound To Mg-Gdp Length = 166 | Back alignment and structure |
|
| >pdb|2QUZ|A Chain A, Crystal Structure Of The Activating H-Rask117r Mutant In Costello Syndrome, Bound To Mg-Gdp Length = 166 | Back alignment and structure |
|
| >pdb|1IAQ|A Chain A, C-H-Ras P21 Protein Mutant With Thr 35 Replaced By Ser (T35s) Complexed With Guanosine-5'-[b,G-Imido] Triphosphate Length = 166 | Back alignment and structure |
|
| >pdb|2CL0|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras P21 In Complex With Gppnhp Length = 166 | Back alignment and structure |
|
| >pdb|3K9N|A Chain A, Allosteric Modulation Of H-Ras Gtpase Length = 166 | Back alignment and structure |
|
| >pdb|1XJ0|A Chain A, Crystal Structure Of The Gdp-Bound Form Of The Rasg60a Mutant Length = 166 | Back alignment and structure |
|
| >pdb|3REF|B Chain B, Crystal Structure Of Ehrho1 Bound To Gdp And Magnesium Length = 194 | Back alignment and structure |
|
| >pdb|1XCM|A Chain A, Crystal Structure Of The Gppnhp-Bound H-Ras G60a Mutant Length = 167 | Back alignment and structure |
|
| >pdb|1NVV|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of The Ras-specific Nucleotide Exchange Factor Sos Length = 166 | Back alignment and structure |
|
| >pdb|521P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants: Molecular Basis For Their Inability To Function As Signal Switch Molecules Length = 166 | Back alignment and structure |
|
| >pdb|4EPX|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And Inhibit Sos- Mediated Activation Length = 170 | Back alignment and structure |
|
| >pdb|4EPT|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And Inhibit Sos- Mediated Activation Length = 170 | Back alignment and structure |
|
| >pdb|1LF0|A Chain A, Crystal Structure Of Rasa59g In The Gtp-Bound Form Length = 166 | Back alignment and structure |
|
| >pdb|4DVG|A Chain A, Crystal Structure Of E. Histolytica Formin1 Bound To Ehrho1-Gtpgammas Length = 188 | Back alignment and structure |
|
| >pdb|2RGB|A Chain A, Crystal Structure Of H-Rasq61k-Gppnhp Length = 166 | Back alignment and structure |
|
| >pdb|621P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants: Molecular Basis For Their Inability To Function As Signal Switch Molecules Length = 166 | Back alignment and structure |
|
| >pdb|1ZW6|A Chain A, Crystal Structure Of The Gtp-Bound Form Of Rasq61g Length = 166 | Back alignment and structure |
|
| >pdb|4EFN|A Chain A, Crystal Structure Of H-Ras Q61l In Complex With Gppnhp (State 1) Length = 171 | Back alignment and structure |
|
| >pdb|2RGC|A Chain A, Crystal Structure Of H-Rasq61v-Gppnhp Length = 166 | Back alignment and structure |
|
| >pdb|721P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants: Molecular Basis For Their Inability To Function As Signal Switch Molecules Length = 166 | Back alignment and structure |
|
| >pdb|1ZVQ|A Chain A, Structure Of The Q61g Mutant Of Ras In The Gdp-Bound Form Length = 166 | Back alignment and structure |
|
| >pdb|2RGA|A Chain A, Crystal Structure Of H-Rasq61i-Gppnhp Length = 166 | Back alignment and structure |
|
| >pdb|3CON|A Chain A, Crystal Structure Of The Human Nras Gtpase Bound With Gdp Length = 190 | Back alignment and structure |
|
| >pdb|4DID|A Chain A, Crystal Structure Of Salmonella Effector N-Terminal Domain Sopb In Complex With Cdc42 Length = 193 | Back alignment and structure |
|
| >pdb|3RAP|R Chain R, The Small G Protein Rap2 In A Non Catalytic Complex With Gtp Length = 167 | Back alignment and structure |
|
| >pdb|1AM4|D Chain D, Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. Sapiens) Length = 177 | Back alignment and structure |
|
| >pdb|1CEE|A Chain A, Solution Structure Of Cdc42 In Complex With The Gtpase Binding Domain Of Wasp Length = 179 | Back alignment and structure |
|
| >pdb|1KZ7|B Chain B, Crystal Structure Of The DhPH FRAGMENT OF MURINE DBS IN Complex With The Placental Isoform Of Human Cdc42 Length = 188 | Back alignment and structure |
|
| >pdb|1AJE|A Chain A, Cdc42 From Human, Nmr, 20 Structures Length = 194 | Back alignment and structure |
|
| >pdb|3GCG|A Chain A, Crystal Structure Of Map And Cdc42 Complex Length = 182 | Back alignment and structure |
|
| >pdb|3EG5|A Chain A, Crystal Structure Of Mdia1-Tsh Gbd-Fh3 In Complex With Cdc42-Gmppnp Length = 178 | Back alignment and structure |
|
| >pdb|2ODB|A Chain A, The Crystal Structure Of Human Cdc42 In Complex With The Crib Domain Of Human P21-Activated Kinase 6 (Pak6) Length = 192 | Back alignment and structure |
|
| >pdb|1EES|A Chain A, Solution Structure Of Cdc42hs Complexed With A Peptide Derived From P-21 Activated Kinase, Nmr, 20 Structures Length = 178 | Back alignment and structure |
|
| >pdb|1GRN|A Chain A, Crystal Structure Of The Cdc42CDC42GAPALF3 COMPLEX. Length = 191 | Back alignment and structure |
|
| >pdb|1GZS|A Chain A, Crystal Structure Of The Complex Between The Gef Domain Of The Salmonella Typhimurium Sope Toxin And Human Cdc42 Length = 180 | Back alignment and structure |
|
| >pdb|2WM9|B Chain B, Structure Of The Complex Between Dock9 And Cdc42. Length = 190 | Back alignment and structure |
|
| >pdb|1DOA|A Chain A, Structure Of The Rho Family Gtp-Binding Protein Cdc42 In Complex With The Multifunctional Regulator Rhogdi Length = 191 | Back alignment and structure |
|
| >pdb|2DFK|B Chain B, Crystal Structure Of The Cdc42-Collybistin Ii Complex Length = 194 | Back alignment and structure |
|
| >pdb|2QRZ|A Chain A, Cdc42 Bound To Gmp-Pcp: Induced Fit By Effector Is Required Length = 189 | Back alignment and structure |
|
| >pdb|1AN0|A Chain A, Cdc42hs-Gdp Complex Length = 190 | Back alignment and structure |
|
| >pdb|3GFT|A Chain A, Human K-Ras In Complex With A Gtp Analogue Length = 187 | Back alignment and structure |
|
| >pdb|1RYF|A Chain A, Alternative Splicing Of Rac1 Generates Rac1b, A Self-Activating Gtpase Length = 203 | Back alignment and structure |
|
| >pdb|2V55|B Chain B, Mechanism Of Multi-site Phosphorylation From A Rock-i:rhoe Complex Structure Length = 200 | Back alignment and structure |
|
| >pdb|1GWN|A Chain A, The Crystal Structure Of The Core Domain Of RhoeRND3 - A Constitutively Activated Small G Protein Length = 205 | Back alignment and structure |
|
| >pdb|1M7B|A Chain A, Crystal Structure Of Rnd3RHOE: FUNCTIONAL IMPLICATIONS Length = 184 | Back alignment and structure |
|
| >pdb|3QBV|A Chain A, Structure Of Designed Orthogonal Interaction Between Cdc42 And Nucleotide Exchange Domains Of Intersectin Length = 178 | Back alignment and structure |
|
| >pdb|2KB0|A Chain A, Cdc42(T35a) Length = 178 | Back alignment and structure |
|
| >pdb|3VHL|B Chain B, Crystal Structure Of The Dhr-2 Domain Of Dock8 In Complex With Cdc42 (T17n Mutant) Length = 195 | Back alignment and structure |
|
| >pdb|2Q3H|A Chain A, The Crystal Structure Of Rhoua In The Gdp-bound State Length = 201 | Back alignment and structure |
|
| >pdb|2ASE|A Chain A, Nmr Structure Of The F28l Mutant Of Cdc42hs Length = 178 | Back alignment and structure |
|
| >pdb|1CF4|A Chain A, Cdc42ACK GTPASE-Binding Domain Complex Length = 184 | Back alignment and structure |
|
| >pdb|2ATX|A Chain A, Crystal Structure Of The Tc10 Gppnhp Complex Length = 194 | Back alignment and structure |
|
| >pdb|1NF3|A Chain A, Structure Of Cdc42 In A Complex With The Gtpase-Binding Domain Of The Cell Polarity Protein, Par6 Length = 195 | Back alignment and structure |
|
| >pdb|1A4R|B Chain B, G12v Mutant Of Human Placental Cdc42 Gtpase In The Gdp Form Length = 191 | Back alignment and structure |
|
| >pdb|3CBQ|A Chain A, Crystal Structure Of The Human Rem2 Gtpase With Bound Gdp Length = 195 | Back alignment and structure |
|
| >pdb|2GF0|A Chain A, The Crystal Structure Of The Human Diras1 Gtpase In The Inactive Gdp Bound State Length = 199 | Back alignment and structure |
|
| >pdb|2ATV|A Chain A, The Crystal Structure Of Human Rerg In The Gdp Bound State Length = 196 | Back alignment and structure |
|
| >pdb|1XTQ|A Chain A, Structure Of Small Gtpase Human Rheb In Complex With Gdp Length = 177 | Back alignment and structure |
|
| >pdb|2L0X|A Chain A, Solution Structure Of The 21 Kda Gtpase Rheb Bound To Gdp Length = 169 | Back alignment and structure |
|
| >pdb|3T5G|A Chain A, Structure Of Fully Modified Farnesylated Rheb In Complex With Pde6d Length = 181 | Back alignment and structure |
|
| >pdb|3OES|A Chain A, Crystal Structure Of The Small Gtpase Rhebl1 Length = 201 | Back alignment and structure |
|
| >pdb|2YC2|C Chain C, Intraflagellar Transport Complex 25-27 From Chlamydomonas Length = 208 | Back alignment and structure |
|
| >pdb|2AL7|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10c Length = 186 | Back alignment and structure |
|
| >pdb|3Q3J|B Chain B, Crystal Structure Of Plexin A2 Rbd In Complex With Rnd1 Length = 214 | Back alignment and structure |
|
| >pdb|2CLS|A Chain A, The Crystal Structure Of The Human Rnd1 Gtpase In The Active Gtp Bound State Length = 198 | Back alignment and structure |
|
| >pdb|2REX|B Chain B, Crystal Structure Of The Effector Domain Of Plxnb1 Bound With Rnd1 Gtpase Length = 197 | Back alignment and structure |
|
| >pdb|3SEA|A Chain A, Structure Of Rheb-Y35a Mutant In Gdp- And Gmppnp-Bound Forms Length = 167 | Back alignment and structure |
|
| >pdb|2CJW|B Chain B, Crystal Structure Of The Small Gtpase Gem (Gemdndcam) In Complex To Mg.Gdp Length = 192 | Back alignment and structure |
|
| >pdb|2CJW|A Chain A, Crystal Structure Of The Small Gtpase Gem (Gemdndcam) In Complex To Mg.Gdp Length = 192 | Back alignment and structure |
|
| >pdb|3Q85|A Chain A, Crystal Structure Of Rem2 G-Domain -Gtp Analog Complex Length = 169 | Back alignment and structure |
|
| >pdb|4AII|A Chain A, Crystal Structure Of The Rat Rem2 Gtpase - G Domain Bound To Gdp Length = 180 | Back alignment and structure |
|
| >pdb|1ZD9|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10b Length = 188 | Back alignment and structure |
|
| >pdb|2H18|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10b (Arl10b) Length = 193 | Back alignment and structure |
|
| >pdb|2G3Y|A Chain A, Crystal Structure Of The Human Small Gtpase Gem Length = 211 | Back alignment and structure |
|
| >pdb|2HT6|A Chain A, Crystal Structure Of Human Gem G-Domain Bound To Gdp Length = 174 | Back alignment and structure |
|
| >pdb|1ZJ6|A Chain A, Crystal Structure Of Human Arl5 Length = 187 | Back alignment and structure |
|
| >pdb|1Z6Y|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5 Length = 179 | Back alignment and structure |
|
| >pdb|1Z6X|A Chain A, Structure Of Human Adp-Ribosylation Factor 4 Length = 180 | Back alignment and structure |
|
| >pdb|2H16|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5) Length = 183 | Back alignment and structure |
|
| >pdb|3IHW|A Chain A, Crystal Structure Of The Ras-Like Domain Of Centg3 Length = 184 | Back alignment and structure |
|
| >pdb|2H17|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5) (Casp Target) Length = 181 | Back alignment and structure |
|
| >pdb|2NZJ|A Chain A, The Crystal Structure Of Rem1 In Complex With Gdp Length = 175 | Back alignment and structure |
|
| >pdb|3LRP|A Chain A, Crystal Structure Of Plasmodium Falciparum Adp-Ribosylation Factor 1 Length = 181 | Back alignment and structure |
|
| >pdb|1RE0|A Chain A, Structure Of Arf1-Gdp Bound To Sec7 Domain Complexed With Brefeldin A Length = 164 | Back alignment and structure |
|
| >pdb|1RRG|A Chain A, Non-Myristoylated Rat Adp-Ribosylation Factor-1 Complexed With Gdp, Dimeric Crystal Form Length = 181 | Back alignment and structure |
|
| >pdb|1HUR|A Chain A, Human Adp-Ribosylation Factor 1 Complexed With Gdp, Full Length = 180 | Back alignment and structure |
|
| >pdb|1MR3|F Chain F, Saccharomyces Cerevisiae Adp-Ribosylation Factor 2 (Scarf2) Complexed With Gdp-3'p At 1.6a Resolution Length = 181 | Back alignment and structure |
|
| >pdb|3RD1|A Chain A, Structure Of An Adp Ribosylation Factor From Entamoeba Histolytica Hm- 1:imss Bound To Mg-Gdp Length = 178 | Back alignment and structure |
|
| >pdb|3O47|A Chain A, Crystal Structure Of Arfgap1-Arf1 Fusion Protein Length = 329 | Back alignment and structure |
|
| >pdb|3DPU|A Chain A, Roccor Domain Tandem Of Rab Family Protein (Roco) Length = 535 | Back alignment and structure |
|
| >pdb|2GJS|A Chain A, The Crystal Structure Of Human Rrad In Complex With Gdp Length = 176 | Back alignment and structure |
|
| >pdb|3TJZ|A Chain A, Crystal Structure Of Arf1 Bound To The GammaZETA-Cop Core Complex Length = 164 | Back alignment and structure |
|
| >pdb|2K5U|A Chain A, Solution Structure Of Myirstoylated Yeast Arf1 Protein, Gdp- Bound Length = 181 | Back alignment and structure |
|
| >pdb|2DPX|A Chain A, Crystal Structure Of Human Rad Gtpase Length = 174 | Back alignment and structure |
|
| >pdb|1J2J|A Chain A, Crystal Structure Of Gga1 Gat N-terminal Region In Complex With Arf1 Gtp Form Length = 166 | Back alignment and structure |
|
| >pdb|2KSQ|A Chain A, The Myristoylated Yeast Arf1 In A Gtp And Bicelle Bound Conformation Length = 181 | Back alignment and structure |
|
| >pdb|2H57|A Chain A, Crystal Structure Of Human Adp-Ribosylation Factor-Like 6 Length = 190 | Back alignment and structure |
|
| >pdb|2B6H|A Chain A, Structure Of Human Adp-Ribosylation Factor 5 Length = 192 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 1qg4_A* 3ea5_A* 1qg2_A* 1byu_A* 3ran_A* 3gjx_C* ... Length = 221 | Back alignment and structure |
|---|
Score = 303 bits (777), Expect = e-106
Identities = 137/173 (79%), Positives = 149/173 (86%), Gaps = 1/173 (0%)
Query: 1 MALPSQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG 60
MA +Q FKLV+VGDGGTGKTTFVKRHLTGEFEKKY T+GVEVHPL F TN G
Sbjct: 4 MASAAQGEPQV-QFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRG 62
Query: 61 KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI 120
I+F WDTAGQEKFGGLRDGYYI QCAIIMFDVT+R+TYKNVP WHRDL RVCENIPI
Sbjct: 63 PIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPI 122
Query: 121 VLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAG 173
VLCGNKVD+K+R+VKAK + FHRKKNLQYY+ISAKSNYNFEKPFL+LARKL G
Sbjct: 123 VLCGNKVDIKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIG 175
|
| >4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi} Length = 218 | Back alignment and structure |
|---|
Score = 276 bits (707), Expect = 7e-96
Identities = 78/173 (45%), Positives = 111/173 (64%), Gaps = 5/173 (2%)
Query: 5 SQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGK-IR 63
S + + ++K+ ++GDGG GKTT++ R L G FEK Y T+G HP+ F + G I+
Sbjct: 4 SMERREL-TYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIK 62
Query: 64 FYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVL 122
F WDTAGQEK L+D YYI AI+ FDVT+R+T +N+ W ++ V PIV+
Sbjct: 63 FNVWDTAGQEKKAVLKDVYYIGASGAILFFDVTSRITCQNLARWVKEFQAVVGNEAPIVV 122
Query: 123 CGNKVDVKNRQVKAKQVTFH--RKKNLQYYEISAKSNYNFEKPFLYLARKLAG 173
C NK+D+KNRQ +K++ + KN +Y+EISAK+ +NF PFL+LAR G
Sbjct: 123 CANKIDIKNRQKISKKLVMEVLKGKNYEYFEISAKTAHNFGLPFLHLARIFTG 175
|
| >1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B* Length = 207 | Back alignment and structure |
|---|
Score = 149 bits (379), Expect = 3e-46
Identities = 61/170 (35%), Positives = 93/170 (54%), Gaps = 17/170 (10%)
Query: 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFT-----NCGKIRFYCWD 68
K++I+GD G GKT+ + +++ +F +Y+ TIG DF T + + WD
Sbjct: 9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGA-----DFLTKEVMVDDRLVTMQIWD 63
Query: 69 TAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDL-----CRVCENIPIVLC 123
TAGQE+F L +Y C +++FDVTA T+K + +W + R EN P V+
Sbjct: 64 TAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVL 123
Query: 124 GNKVDVKNRQVKAKQVT--FHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
GNK+D++NRQV K+ + K N+ Y+E SAK N E+ F +AR
Sbjct: 124 GNKIDLENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNA 173
|
| >1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A* Length = 168 | Back alignment and structure |
|---|
Score = 144 bits (366), Expect = 8e-45
Identities = 52/169 (30%), Positives = 88/169 (52%), Gaps = 13/169 (7%)
Query: 10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFT-----NCGKIRF 64
+ + K+V+VG+G GK++ ++R+ G F K Y+ TIGV DF N +R
Sbjct: 3 EV-AIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGV-----DFLERQIQVNDEDVRL 56
Query: 65 YCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCG 124
WDTAGQE+F + YY Q +++F T R +++ + +W + +IP L
Sbjct: 57 MLWDTAGQEEFDAITKAYYRGAQACVLVFSTTDRESFEAISSWREKVVAEVGDIPTALVQ 116
Query: 125 NKVDVKN-RQVKAKQV-TFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
NK+D+ + +K ++ ++ L++Y S K + N + F YLA K
Sbjct: 117 NKIDLLDDSCIKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVFKYLAEKH 165
|
| >1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A* Length = 177 | Back alignment and structure |
|---|
Score = 144 bits (367), Expect = 8e-45
Identities = 50/170 (29%), Positives = 86/170 (50%), Gaps = 17/170 (10%)
Query: 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFT-----NCGKIRFYCWD 68
FK++++GDGG GK++ + R++T +F+ + TIGV +F + + WD
Sbjct: 8 FKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGV-----EFLNKDLEVDGHFVTMQIWD 62
Query: 69 TAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDL-----CRVCENIPIVLC 123
TAGQE+F LR +Y C ++ F V +++N+ W ++ + E+ P V+
Sbjct: 63 TAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVIL 122
Query: 124 GNKVDVKNRQVKAKQVT--FHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
GNK+D+ RQV ++ + Y+E SAK N F R++
Sbjct: 123 GNKIDISERQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVRRV 172
|
| >2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ... Length = 166 | Back alignment and structure |
|---|
Score = 142 bits (361), Expect = 5e-44
Identities = 47/167 (28%), Positives = 81/167 (48%), Gaps = 14/167 (8%)
Query: 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFT-----NCGKIRFYC 66
+KLV+VG GG GK+ + + F + +PTI D + +
Sbjct: 2 TEYKLVVVGAGGVGKSALTIQLIQNHFVDECDPTIE------DSYRKQVVIDGETCLLDI 55
Query: 67 WDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCG 124
DTAGQE++ +RD Y G+ + +F + +++++ + + RV +++P+VL G
Sbjct: 56 LDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVG 115
Query: 125 NKVDVKNRQVKAKQV-TFHRKKNLQYYEISAKSNYNFEKPFLYLARK 170
NK D+ R V+++Q R + Y E SAK+ E F L R+
Sbjct: 116 NKSDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVRE 162
|
| >3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A* Length = 190 | Back alignment and structure |
|---|
Score = 143 bits (362), Expect = 6e-44
Identities = 47/167 (28%), Positives = 79/167 (47%), Gaps = 14/167 (8%)
Query: 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFT-----NCGKIRFYC 66
+KLV+VG GG GK+ + + F +Y+PTI D + +
Sbjct: 20 TEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIE------DSYRKQVVIDGETCLLDI 73
Query: 67 WDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCG 124
DTAGQE++ +RD Y G+ + +F + ++ ++ + + RV +++P+VL G
Sbjct: 74 LDTAGQEEYSAMRDQYMRTGEGFLCVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVG 133
Query: 125 NKVDVKNRQVKAKQ-VTFHRKKNLQYYEISAKSNYNFEKPFLYLARK 170
NK D+ R V KQ + + + E SAK+ E F L R+
Sbjct: 134 NKCDLPTRTVDTKQAHELAKSYGIPFIETSAKTRQGVEDAFYTLVRE 180
|
| >1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A* Length = 182 | Back alignment and structure |
|---|
Score = 142 bits (360), Expect = 9e-44
Identities = 49/173 (28%), Positives = 85/173 (49%), Gaps = 20/173 (11%)
Query: 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFT-----NCGK-IRFYCW 67
K++I+GD G GKT+ + R++ ++ ++Y+ TIG DF T + K W
Sbjct: 9 LKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGA-----DFLTKEVTVDGDKVATMQVW 63
Query: 68 DTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDL-----CRVCENIPIVL 122
DTAGQE+F L +Y C ++++DVT +++N+ +W + E P V+
Sbjct: 64 DTAGQERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVI 123
Query: 123 CGNKVDVK--NRQVKAKQV-TFHRKK-NLQYYEISAKSNYNFEKPFLYLARKL 171
GNK+D + + V K + ++ + SAK+ N + F +AR
Sbjct: 124 LGNKIDAEESKKIVSEKSAQELAKSLGDIPLFLTSAKNAINVDTAFEEIARSA 176
|
| >2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A* Length = 178 | Back alignment and structure |
|---|
Score = 141 bits (358), Expect = 2e-43
Identities = 44/170 (25%), Positives = 83/170 (48%), Gaps = 17/170 (10%)
Query: 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFT------NCGKIRFYCW 67
K+V++GDG +GKT+ F K+Y+ TIG+ DFF + W
Sbjct: 7 LKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGL-----DFFLRRITLPGNLNVTLQIW 61
Query: 68 DTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCE----NIPIVLC 123
D GQ G + D Y Q ++++D+T +++N+ W+ + +V E + L
Sbjct: 62 DIGGQTIGGKMLDKYIYGAQGVLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALV 121
Query: 124 GNKVDVKN-RQVKAKQV-TFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
GNK+D+++ R +K ++ F ++ + +SAK+ + F +A ++
Sbjct: 122 GNKIDLEHMRTIKPEKHLRFCQENGFSSHFVSAKTGDSVFLCFQKVAAEI 171
|
| >2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A* Length = 181 | Back alignment and structure |
|---|
Score = 141 bits (358), Expect = 2e-43
Identities = 53/167 (31%), Positives = 83/167 (49%), Gaps = 15/167 (8%)
Query: 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFT-----NCGKIRFYCWD 68
KLV+VG GG GK+ + + F Y+PTI D +T + R D
Sbjct: 10 HKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIE------DSYTKICSVDGIPARLDILD 63
Query: 69 TAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNK 126
TAGQE+FG +R+ Y G +++F + R ++ V + RV ++ P+VL GNK
Sbjct: 64 TAGQEEFGAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNK 123
Query: 127 VDVKN-RQVKAKQV-TFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
D+++ RQV + F ++ Y+E SAK N ++ F L R +
Sbjct: 124 ADLESQRQVPRSEASAFGASHHVAYFEASAKLRLNVDEAFEQLVRAV 170
|
| >4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A* Length = 189 | Back alignment and structure |
|---|
Score = 141 bits (358), Expect = 3e-43
Identities = 47/166 (28%), Positives = 81/166 (48%), Gaps = 14/166 (8%)
Query: 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFT-----NCGKIRFYCWD 68
+KLV+VG G GK+ + + F +Y+PTI D + + D
Sbjct: 5 YKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIE------DSYRKQVVIDGETCLLDILD 58
Query: 69 TAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNK 126
TAGQE++ +RD Y G+ + +F + +++++ + + RV E++P+VL GNK
Sbjct: 59 TAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNK 118
Query: 127 VDVKNRQVKAKQV-TFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
D+ +R V KQ R + + E SAK+ + F L R++
Sbjct: 119 CDLPSRTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVREI 164
|
| >2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A* Length = 179 | Back alignment and structure |
|---|
Score = 140 bits (356), Expect = 3e-43
Identities = 53/181 (29%), Positives = 88/181 (48%), Gaps = 14/181 (7%)
Query: 1 MALPSQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFT--- 57
M+ FKLV +G+ GKT+ + R + F+ Y+ TIG+ DF +
Sbjct: 3 MSSGDFGNPLR-KFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGI-----DFLSKTM 56
Query: 58 --NCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCR-V 114
+R WDTAGQE+F L Y A++++D+T ++ W D+
Sbjct: 57 YLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNTNSFHQTSKWIDDVRTER 116
Query: 115 CENIPIVLCGNKVDVKN-RQVKAKQV-TFHRKKNLQYYEISAKSNYNFEKPFLYLARKLA 172
++ I+L GNK D+ + RQV ++ ++ N+ + E SAK+ YN ++ F +A L
Sbjct: 117 GSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALP 176
Query: 173 G 173
G
Sbjct: 177 G 177
|
| >2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A* Length = 187 | Back alignment and structure |
|---|
Score = 140 bits (355), Expect = 6e-43
Identities = 50/179 (27%), Positives = 88/179 (49%), Gaps = 16/179 (8%)
Query: 1 MALPSQQTVDY-PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFT-- 57
++ + + K+++VG GG GK+ + + EF + YEPT D +
Sbjct: 5 ISGGGGGSQNSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKA------DSYRKK 58
Query: 58 ---NCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV 114
+ +++ DTAGQE + +RD Y+ G+ + +F +T ++ + + RV
Sbjct: 59 VVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRV 118
Query: 115 --CENIPIVLCGNKVDVKN-RQVKAKQV-TFHRKKNLQYYEISAKSNYNFEKPFLYLAR 169
EN+P +L GNK D+++ RQV ++ + N+ Y E SAK+ N +K F L R
Sbjct: 119 KEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMR 177
|
| >1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R* Length = 167 | Back alignment and structure |
|---|
Score = 139 bits (352), Expect = 1e-42
Identities = 48/165 (29%), Positives = 87/165 (52%), Gaps = 15/165 (9%)
Query: 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFT-----NCGKIRFYCWD 68
+K+V++G GG GK+ + +TG F +KY+PTI DF+ + D
Sbjct: 4 YKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIE------DFYRKEIEVDSSPSVLEILD 57
Query: 69 TAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNK 126
TAG E+F +RD Y +GQ I+++ + + +++++ + RV E +P++L GNK
Sbjct: 58 TAGTEQFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNK 117
Query: 127 VDVKN-RQVKAKQV-TFHRKKNLQYYEISAKSNYNFEKPFLYLAR 169
VD+++ R+V + + + + E SAKS ++ F + R
Sbjct: 118 VDLESEREVSSSEGRALAEEWGCPFMETSAKSKTMVDELFAEIVR 162
|
| >2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens} Length = 206 | Back alignment and structure |
|---|
Score = 140 bits (354), Expect = 1e-42
Identities = 52/179 (29%), Positives = 85/179 (47%), Gaps = 16/179 (8%)
Query: 1 MALPSQQTVDY-PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFT-- 57
MA + + K+++VG GG GK+ + + EF + YEPT D +
Sbjct: 1 MAANKPKGQNSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKA------DSYRKK 54
Query: 58 ---NCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV 114
+ +++ DTAGQE + +RD Y+ G+ + +F +T ++ + + RV
Sbjct: 55 VVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRV 114
Query: 115 --CENIPIVLCGNKVD-VKNRQVKAKQ-VTFHRKKNLQYYEISAKSNYNFEKPFLYLAR 169
EN+P +L GNK D RQV ++ + N+ Y E SAK+ N +K F L R
Sbjct: 115 KEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMR 173
|
| >1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A* Length = 168 | Back alignment and structure |
|---|
Score = 138 bits (351), Expect = 1e-42
Identities = 50/165 (30%), Positives = 84/165 (50%), Gaps = 15/165 (9%)
Query: 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFT-----NCGKIRFYCWD 68
K+++VG GG GK+ + + EF + YEPT D + + +++ D
Sbjct: 5 HKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKA------DSYRKKVVLDGEEVQIDILD 58
Query: 69 TAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNK 126
TAGQE + +RD Y+ G+ + +F +T ++ + + RV EN+P +L GNK
Sbjct: 59 TAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNK 118
Query: 127 VDVKN-RQVKAKQ-VTFHRKKNLQYYEISAKSNYNFEKPFLYLAR 169
D+++ RQV ++ + N+ Y E SAK+ N +K F L R
Sbjct: 119 SDLEDKRQVSVEEAKNRADQWNVNYVETSAKTRANVDKVFFDLMR 163
|
| >3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* Length = 181 | Back alignment and structure |
|---|
Score = 139 bits (352), Expect = 2e-42
Identities = 43/168 (25%), Positives = 72/168 (42%), Gaps = 15/168 (8%)
Query: 13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFT-----NCGKIRFYCW 67
S K+ I+G GK++ + + G+F Y+PTI + FT N +
Sbjct: 6 SRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIE------NTFTKLITVNGQEYHLQLV 59
Query: 68 DTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGN 125
DTAGQ+++ Y I I+++ VT+ +++ + H L + IPI+L GN
Sbjct: 60 DTAGQDEYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGN 119
Query: 126 KVD-VKNRQVKAKQ-VTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
K D R + ++ N + E SAK N F + +
Sbjct: 120 KKDLHMERVISYEEGKALAESWNAAFLESSAKENQTAVDVFRRIILEA 167
|
| >3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens} Length = 195 | Back alignment and structure |
|---|
Score = 139 bits (352), Expect = 2e-42
Identities = 44/177 (24%), Positives = 76/177 (42%), Gaps = 16/177 (9%)
Query: 3 LPSQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFT----- 57
L Q D FK+++VG+ G GK+T + + +EP D +
Sbjct: 14 LYFQGQKDGI-FKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPE-----DTYERRIMV 67
Query: 58 NCGKIRFYCWDTAGQEKFGG-LRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV-- 114
+ ++ +D Q GG LRD G +I+F VT R ++ VP L
Sbjct: 68 DKEEVTLVVYDIWEQGDAGGWLRDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRP 127
Query: 115 CENIPIVLCGNKVD-VKNRQVKAKQ-VTFHRKKNLQYYEISAKSNYNFEKPFLYLAR 169
++P++L GNK D ++R+V ++ + ++ E SA ++N + F R
Sbjct: 128 HHDLPVILVGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEGAVR 184
|
| >3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens} Length = 201 | Back alignment and structure |
|---|
Score = 139 bits (353), Expect = 2e-42
Identities = 38/167 (22%), Positives = 80/167 (47%), Gaps = 15/167 (8%)
Query: 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFT-----NCGKIRFYCWD 68
K+VI+G GKT+ + + GEF + Y+PT+ + ++ + + D
Sbjct: 25 RKVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVE------NTYSKIVTLGKDEFHLHLVD 78
Query: 69 TAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNK 126
TAGQ+++ L + I ++++ VT+ +++ + + ++ L +P+VL GNK
Sbjct: 79 TAGQDEYSILPYSFIIGVHGYVLVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVGNK 138
Query: 127 VDVKN-RQVKAKQ-VTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
D+ R+V+A + + E SA+ N + F + +++
Sbjct: 139 ADLSPEREVQAVEGKKLAESWGATFMESSARENQLTQGIFTKVIQEI 185
|
| >2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 Length = 199 | Back alignment and structure |
|---|
Score = 139 bits (353), Expect = 2e-42
Identities = 43/165 (26%), Positives = 78/165 (47%), Gaps = 15/165 (9%)
Query: 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFT-----NCGKIRFYCWD 68
+++V+ G GG GK++ V R + G F Y PTI D + + D
Sbjct: 9 YRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIE------DTYRQVISCDKSVCTLQITD 62
Query: 69 TAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV---CENIPIVLCGN 125
T G +F ++ G I++F VT++ + + + ++ + ++ E+IP++L GN
Sbjct: 63 TTGSHQFPAMQRLSISKGHAFILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGN 122
Query: 126 KVDVKNRQVKAKQV-TFHRKKNLQYYEISAKSNYNFEKPFLYLAR 169
K D R+V ++ ++ + E SAK NYN ++ F L
Sbjct: 123 KCDETQREVDTREAQAVAQEWKCAFMETSAKMNYNVKELFQELLT 167
|
| >3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A* Length = 195 | Back alignment and structure |
|---|
Score = 139 bits (352), Expect = 2e-42
Identities = 53/181 (29%), Positives = 84/181 (46%), Gaps = 15/181 (8%)
Query: 5 SQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVE---------VHPLDF 55
S DY K + +GD G GKT+ + ++ G+F K+ T+G++ + D
Sbjct: 4 SDGDYDY-LIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDG 62
Query: 56 FTNCGK-IRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCR- 113
G+ I WDTAG E+F L ++ +++FD+T ++ NV W L
Sbjct: 63 AVGRGQRIHLQLWDTAGLERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMH 122
Query: 114 -VCENIPIVLCGNKVDVKN-RQVKAKQV-TFHRKKNLQYYEISAKSNYNFEKPFLYLARK 170
EN IVLCGNK D+++ R VK ++ K + Y+E SA + N L
Sbjct: 123 AYSENPDIVLCGNKSDLEDQRAVKEEEARELAEKYGIPYFETSAANGTNISHAIEMLLDL 182
Query: 171 L 171
+
Sbjct: 183 I 183
|
| >2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B* Length = 181 | Back alignment and structure |
|---|
Score = 138 bits (350), Expect = 3e-42
Identities = 58/178 (32%), Positives = 96/178 (53%), Gaps = 14/178 (7%)
Query: 2 ALPSQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFT---- 57
++ + + KLV++GD G GK++ V R + +F + E TIG FF+
Sbjct: 2 SMAAAGNKSI-NAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGA-----AFFSQTLA 55
Query: 58 -NCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC- 115
N ++F WDTAGQE++ L YY AII+FDVT + +++ W ++L
Sbjct: 56 VNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVFDVTNQASFERAKKWVQELQAQGN 115
Query: 116 ENIPIVLCGNKVDVKN-RQVKAKQV-TFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
N+ + L GNK D+ + R+V A+ T+ ++ L + E SAK+ N ++ F +AR+L
Sbjct: 116 PNMVMALAGNKSDLLDARKVTAEDAQTYAQENGLFFMETSAKTATNVKEIFYEIARRL 173
|
| >1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A* Length = 170 | Back alignment and structure |
|---|
Score = 138 bits (349), Expect = 3e-42
Identities = 52/170 (30%), Positives = 90/170 (52%), Gaps = 14/170 (8%)
Query: 10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFT-----NCGKIRF 64
Y SFK+V++G+G GKT+ V R+ +F K+ T+G F T ++
Sbjct: 4 AY-SFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGA-----SFLTKKLNIGGKRVNL 57
Query: 65 YCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLC 123
WDTAGQE+F L YY AI+++D+T +++ V W ++L ++ I + +
Sbjct: 58 AIWDTAGQERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIV 117
Query: 124 GNKVDVKN-RQVKAKQV-TFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
GNK+D++ R V ++ ++ ++Y SAK N E+ FL L +++
Sbjct: 118 GNKIDLEKERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDLCKRM 167
|
| >3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} Length = 169 | Back alignment and structure |
|---|
Score = 138 bits (349), Expect = 3e-42
Identities = 39/166 (23%), Positives = 72/166 (43%), Gaps = 15/166 (9%)
Query: 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFT-----NCGKIRFYCWD 68
FK+++VG+ G GK+T + + +E D + + ++ +D
Sbjct: 3 FKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSE-----DTYERRIMVDKEEVTLIVYD 57
Query: 69 TAGQEKFGG-LRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGN 125
Q GG L+D G +I+F VT R ++ VP L ++P++L GN
Sbjct: 58 IWEQGDAGGWLQDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGN 117
Query: 126 KVD-VKNRQVKAKQ-VTFHRKKNLQYYEISAKSNYNFEKPFLYLAR 169
K D ++R+V ++ + ++ E SA ++N + F R
Sbjct: 118 KSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEGAVR 163
|
| >3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A* Length = 183 | Back alignment and structure |
|---|
Score = 138 bits (349), Expect = 5e-42
Identities = 58/179 (32%), Positives = 91/179 (50%), Gaps = 16/179 (8%)
Query: 1 MALPSQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFT--- 57
MA + + + P++KLV+VGDGG GK+ + F Y+PTI D +
Sbjct: 6 MATSAVPSENLPTYKLVVVGDGGVGKSALTIQFFQKIFVDDYDPTIE------DSYLKHT 59
Query: 58 --NCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV- 114
+ DTAGQE+F +R+ Y G +I++ VT + ++++V +H+ + RV
Sbjct: 60 EIDNQWAILDVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVK 119
Query: 115 -CENIPIVLCGNKVDVKN-RQVKAKQ-VTFHRKKNLQYYEISAKSN-YNFEKPFLYLAR 169
E+ P++L NKVD+ + R+V Q K N+ Y E SAK N +K F L R
Sbjct: 120 DRESFPMILVANKVDLMHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHDLVR 178
|
| >2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A* Length = 217 | Back alignment and structure |
|---|
Score = 139 bits (351), Expect = 5e-42
Identities = 58/185 (31%), Positives = 87/185 (47%), Gaps = 15/185 (8%)
Query: 1 MALPSQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVE----------V 50
+ DY KL+ +GD G GKTTF+ R+ +F K+ T+G++
Sbjct: 14 LVPRGSGDYDY-LIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQ 72
Query: 51 HPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRD 110
P K+ WDTAGQE+F L ++ ++MFD+T++ ++ NV W
Sbjct: 73 GPNGSSGKAFKVHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQ 132
Query: 111 LCR--VCENIPIVLCGNKVDVKN-RQVKAKQV-TFHRKKNLQYYEISAKSNYNFEKPFLY 166
L CEN IVL GNK D+ + R+V +Q K + Y+E SA + N EK
Sbjct: 133 LQANAYCENPDIVLIGNKADLPDQREVNERQARELADKYGIPYFETSAATGQNVEKAVET 192
Query: 167 LARKL 171
L +
Sbjct: 193 LLDLI 197
|
| >2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 Length = 172 | Back alignment and structure |
|---|
Score = 137 bits (348), Expect = 5e-42
Identities = 42/166 (25%), Positives = 78/166 (46%), Gaps = 16/166 (9%)
Query: 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFT-----NCGKIRFYCWD 68
+++ + G GG GK++ V R + G F + Y PT+ D + + D
Sbjct: 4 YRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVE------DTYRQVISCDKSICTLQITD 57
Query: 69 TAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV---CENIPIVLCGN 125
T G +F ++ G I+++ +T+R + + + + +C + E+IPI+L GN
Sbjct: 58 TTGSHQFPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGN 117
Query: 126 KVD-VKNRQVKAKQV-TFHRKKNLQYYEISAKSNYNFEKPFLYLAR 169
K D +R+V++ + R + E SAK N+N ++ F L
Sbjct: 118 KCDESPSREVQSSEAEALARTWKCAFMETSAKLNHNVKELFQELLN 163
|
| >2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8 Length = 192 | Back alignment and structure |
|---|
Score = 137 bits (348), Expect = 9e-42
Identities = 51/167 (30%), Positives = 82/167 (49%), Gaps = 13/167 (7%)
Query: 13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFT-----NCGKIRFYCW 67
K+ ++GD G GK++ V R + F+ PTIG F T +F W
Sbjct: 23 ELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGA-----SFMTKTVPCGNELHKFLIW 77
Query: 68 DTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNK 126
DTAGQE+F L YY A+I++D+T + ++ + W ++L ENI + + GNK
Sbjct: 78 DTAGQERFHSLAPMYYRGSAAAVIVYDITKQDSFYTLKKWVKELKEHGPENIVMAIAGNK 137
Query: 127 VDVKN-RQVKAKQV-TFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
D+ + R+V K + E SAK+ N E+ F ++R++
Sbjct: 138 CDLSDIREVPLKDAKEYAESIGAIVVETSAKNAINIEELFQGISRQI 184
|
| >3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens} Length = 181 | Back alignment and structure |
|---|
Score = 137 bits (347), Expect = 9e-42
Identities = 55/169 (32%), Positives = 87/169 (51%), Gaps = 13/169 (7%)
Query: 10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFT-----NCGKIRF 64
D+ FKL+I+GD G GK++ + R F Y TIGV DF N K++
Sbjct: 7 DH-LFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGV-----DFKIRTVEINGEKVKL 60
Query: 65 YCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCG 124
WDTAGQE+F + YY I+++DVT+ ++ NV W ++ + C+++ +L G
Sbjct: 61 QIWDTAGQERFRTITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEINQNCDDVCRILVG 120
Query: 125 NKVDVKN-RQVKAKQ-VTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
NK D + V+ + F + +Q +E SAK N N E+ F + +
Sbjct: 121 NKNDDPERKVVETEDAYKFAGQMGIQLFETSAKENVNVEEMFNCITELV 169
|
| >1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A* Length = 170 | Back alignment and structure |
|---|
Score = 136 bits (346), Expect = 1e-41
Identities = 57/167 (34%), Positives = 91/167 (54%), Gaps = 13/167 (7%)
Query: 13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFT-----NCGKIRFYCW 67
FKLV++G+ GK++ V R + G+F + E TIG F T + ++F W
Sbjct: 6 QFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGA-----AFLTQTVCLDDTTVKFEIW 60
Query: 68 DTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCR-VCENIPIVLCGNK 126
DTAGQE++ L YY Q AI+++D+T ++ W ++L R NI I L GNK
Sbjct: 61 DTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNK 120
Query: 127 VDVKN-RQVKAKQV-TFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
D+ N R V ++ ++ +L + E SAK++ N + F+ +A+KL
Sbjct: 121 ADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKL 167
|
| >3bbp_A RAB-6, RAS-related protein RAB-6A; golgi complex, GRIP domain, RAB GTPase, ARL GTPase, golgin, RAB effector, clAsp protein; HET: GTP; 3.00A {Homo sapiens} Length = 211 | Back alignment and structure |
|---|
Score = 138 bits (349), Expect = 1e-41
Identities = 50/166 (30%), Positives = 85/166 (51%), Gaps = 13/166 (7%)
Query: 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFT-----NCGKIRFYCWD 68
FKLV +G+ GKT+ + R + F+ Y+ TIG+ DF + +R WD
Sbjct: 17 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGI-----DFLSKTMYLEDRTVRLQLWD 71
Query: 69 TAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCR-VCENIPIVLCGNKV 127
TAG E+F L Y A++++D+T +++ W D+ ++ I+L GNK
Sbjct: 72 TAGLERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKT 131
Query: 128 DVKN-RQVKAKQV-TFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
D+ + RQV ++ ++ N+ + E SAK+ YN ++ F +A L
Sbjct: 132 DLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAAL 177
|
| >3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 213 | Back alignment and structure |
|---|
Score = 137 bits (348), Expect = 1e-41
Identities = 50/178 (28%), Positives = 89/178 (50%), Gaps = 13/178 (7%)
Query: 1 MALPSQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFT--- 57
+ + ++ D K++++GD G GK+ + R + +F + TIG+ DF
Sbjct: 9 ASSGNGKSYDS-IMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGI-----DFKIKTV 62
Query: 58 --NCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCR-V 114
N K++ WDTAGQE+F + YY I+++DVT T+ N+ W + +
Sbjct: 63 DINGKKVKLQLWDTAGQERFRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHA 122
Query: 115 CENIPIVLCGNKVDVKNRQVKAKQ-VTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
+ ++L GNK D++ R V A Q ++ + + E SAK++ N + F LA+ +
Sbjct: 123 NDEAQLLLVGNKSDMETRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLI 180
|
| >1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A Length = 170 | Back alignment and structure |
|---|
Score = 136 bits (344), Expect = 2e-41
Identities = 49/169 (28%), Positives = 85/169 (50%), Gaps = 13/169 (7%)
Query: 10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFT-----NCGKIRF 64
D K++++GD G GK+ + R + +F + TIG+ DF N K++
Sbjct: 1 DS-IMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGI-----DFKIKTVDINGKKVKL 54
Query: 65 YCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCR-VCENIPIVLC 123
WDTAGQE+F + YY I+++D+T T+ N+ W + + + ++L
Sbjct: 55 QIWDTAGQERFRTITTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLV 114
Query: 124 GNKVDVKNRQVKAKQ-VTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
GNK D++ R V A Q ++ + + E SAK++ N + F LA+ +
Sbjct: 115 GNKSDMETRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLI 163
|
| >1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B* Length = 191 | Back alignment and structure |
|---|
Score = 136 bits (346), Expect = 2e-41
Identities = 56/176 (31%), Positives = 87/176 (49%), Gaps = 14/176 (7%)
Query: 4 PSQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFT-----N 58
DY FK+V++GD G GK+ + R EF + + TIGV +F T +
Sbjct: 21 TRDDEYDY-LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGV-----EFATRSIQVD 74
Query: 59 CGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCR-VCEN 117
I+ WDTAG E++ + YY A++++D+ LTY+NV W ++L N
Sbjct: 75 GKTIKAQIWDTAGLERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSN 134
Query: 118 IPIVLCGNKVDVKN-RQVKAKQV-TFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
I I+L GNK D+++ R V + F K L + E SA + N E F + ++
Sbjct: 135 IVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEI 190
|
| >1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A* Length = 170 | Back alignment and structure |
|---|
Score = 136 bits (344), Expect = 2e-41
Identities = 50/169 (29%), Positives = 83/169 (49%), Gaps = 17/169 (10%)
Query: 13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFT-----NCGKIRFYCW 67
K+ ++GD G GK++ + R + F+ PTIG F T +F W
Sbjct: 6 ELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGA-----SFMTKTVQYQNELHKFLIW 60
Query: 68 DTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNK 126
DTAG E+F L YY AII++D+T T+ + W R+L + +I + + GNK
Sbjct: 61 DTAGLERFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNK 120
Query: 127 VDVKN-RQVK---AKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
D+ + R+V AK + + + E SAK+ N + F+ ++R++
Sbjct: 121 CDLTDVREVMERDAKD--YADSIHAIFVETSAKNAININELFIEISRRI 167
|
| >2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens} Length = 193 | Back alignment and structure |
|---|
Score = 136 bits (345), Expect = 3e-41
Identities = 50/179 (27%), Positives = 83/179 (46%), Gaps = 14/179 (7%)
Query: 1 MALPSQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFT--- 57
+ + ++ FK+V++G+ G GKT + R EF TIGV +F T
Sbjct: 14 LVPRGSEDYNF-VFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGV-----EFSTRTV 67
Query: 58 --NCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCR-V 114
++ WDTAG E++ + YY A+++FD+T TY V W ++L
Sbjct: 68 MLGTAAVKAQIWDTAGLERYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHA 127
Query: 115 CENIPIVLCGNKVDVKN-RQVKAKQV-TFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
I ++L GNK D+ R+V ++ F L + E SA + N E F + +++
Sbjct: 128 EATIVVMLVGNKSDLSQAREVPTEEARMFAENNGLLFLETSALDSTNVELAFETVLKEI 186
|
| >2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 Length = 201 | Back alignment and structure |
|---|
Score = 136 bits (345), Expect = 3e-41
Identities = 60/179 (33%), Positives = 93/179 (51%), Gaps = 14/179 (7%)
Query: 1 MALPSQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFT--- 57
+ S + D+ FK+V++G+ G GKT V+R G F TIGV DF
Sbjct: 15 VPRGSMEDYDF-LFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGV-----DFMIKTV 68
Query: 58 --NCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCR-V 114
N K++ WDTAGQE+F + YY I+ +D+T +++ +P W R++ +
Sbjct: 69 EINGEKVKLQIWDTAGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYA 128
Query: 115 CENIPIVLCGNKVDVKN-RQVKAKQV-TFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
+ VL GNK+D+ R+V ++ F +++ Y E SAK + N EK FL LA +L
Sbjct: 129 SNKVITVLVGNKIDLAERREVSQQRAEEFSEAQDMYYLETSAKESDNVEKLFLDLACRL 187
|
| >1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A* Length = 179 | Back alignment and structure |
|---|
Score = 135 bits (343), Expect = 4e-41
Identities = 57/176 (32%), Positives = 88/176 (50%), Gaps = 14/176 (7%)
Query: 4 PSQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFT-----N 58
+ Y FK +I+GD G GK+ + + +F TIGV +F T +
Sbjct: 7 TAPYNYSY-IFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGV-----EFGTRIIEVS 60
Query: 59 CGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-EN 117
KI+ WDTAGQE+F + YY A++++D+T R TY ++ +W D + N
Sbjct: 61 GQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPN 120
Query: 118 IPIVLCGNKVDVK-NRQVKAKQV-TFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
I+L GNK D++ R V ++ F + L + E SAK+ N E FL A+K+
Sbjct: 121 TVIILIGNKADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAAKKI 176
|
| >2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens} Length = 200 | Back alignment and structure |
|---|
Score = 135 bits (343), Expect = 6e-41
Identities = 53/170 (31%), Positives = 90/170 (52%), Gaps = 14/170 (8%)
Query: 10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFT-----NCGKIRF 64
D+ FK +++G GTGK+ + + + +F++ TIGV +F + ++
Sbjct: 23 DF-LFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGV-----EFGSRVVNVGGKTVKL 76
Query: 65 YCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLC 123
WDTAGQE+F + YY A++++D+T+R TY ++ W D + NI ++LC
Sbjct: 77 QIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLASPNIVVILC 136
Query: 124 GNKVDVK-NRQVKAKQV-TFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
GNK D+ R+V + F ++ L + E SA + N E+ FL AR +
Sbjct: 137 GNKKDLDPEREVTFLEASRFAQENELMFLETSALTGENVEEAFLKCARTI 186
|
| >2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A* Length = 199 | Back alignment and structure |
|---|
Score = 135 bits (342), Expect = 8e-41
Identities = 58/170 (34%), Positives = 90/170 (52%), Gaps = 14/170 (8%)
Query: 10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFT-----NCGKIRF 64
DY FK+V++GD G GK+ + R EF + + TIGV +F T + I+
Sbjct: 3 DY-LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGV-----EFATRSIQVDGKTIKA 56
Query: 65 YCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCR-VCENIPIVLC 123
WDTAGQE++ + YY A++++D+ LTY+NV W ++L NI I+L
Sbjct: 57 QIWDTAGQERYRRITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLV 116
Query: 124 GNKVDVKN-RQVKAKQV-TFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
GNK D+++ R V + F K NL + E SA + N E+ F + ++
Sbjct: 117 GNKSDLRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEI 166
|
| >1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8 Length = 195 | Back alignment and structure |
|---|
Score = 135 bits (341), Expect = 9e-41
Identities = 56/176 (31%), Positives = 89/176 (50%), Gaps = 14/176 (7%)
Query: 4 PSQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFT-----N 58
+ V + K++I+G+ G GK++ + R F+ + TIGV DF +
Sbjct: 7 GMDEDVLT-TLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGV-----DFKVKTISVD 60
Query: 59 CGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC--E 116
K + WDTAGQE+F L YY Q I+++DVT R T+ + W +L C
Sbjct: 61 GNKAKLAIWDTAGQERFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRN 120
Query: 117 NIPIVLCGNKVDVKNRQVKAKQ-VTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
+I +L GNK+D +NR+V + + F RK ++ + E SAK+ + F L K+
Sbjct: 121 DIVNMLVGNKIDKENREVDRNEGLKFARKHSMLFIEASAKTCDGVQCAFEELVEKI 176
|
| >1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D* Length = 167 | Back alignment and structure |
|---|
Score = 134 bits (339), Expect = 9e-41
Identities = 53/166 (31%), Positives = 84/166 (50%), Gaps = 16/166 (9%)
Query: 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFT-----NCGKIRFYCWD 68
+KLV++G GG GK+ + + G F +KY+PTI D + +C + D
Sbjct: 4 YKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIE------DSYRKQVEVDCQQCMLEILD 57
Query: 69 TAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNK 126
TAG E+F +RD Y +GQ +++ +TA+ T+ ++ + RV E++P++L GNK
Sbjct: 58 TAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNK 117
Query: 127 VD-VKNRQVKAKQVT--FHRKKNLQYYEISAKSNYNFEKPFLYLAR 169
D R V +Q + N + E SAKS N + F L R
Sbjct: 118 CDLEDERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDLVR 163
|
| >2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A* Length = 186 | Back alignment and structure |
|---|
Score = 134 bits (341), Expect = 9e-41
Identities = 55/173 (31%), Positives = 94/173 (54%), Gaps = 14/173 (8%)
Query: 7 QTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFT-----NCGK 61
+T D+ FK +++G+ GTGK+ + + + +F+ TIGV +F +
Sbjct: 5 ETYDF-LFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGV-----EFGSKIINVGGKY 58
Query: 62 IRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-ENIPI 120
++ WDTAGQE+F + YY A++++D+T+R TY + W D + +NI I
Sbjct: 59 VKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVI 118
Query: 121 VLCGNKVDVK-NRQVKAKQV-TFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
+LCGNK D+ +R+V + F ++ L + E SA + N E+ F+ ARK+
Sbjct: 119 ILCGNKKDLDADREVTFLEASRFAQENELMFLETSALTGENVEEAFVQCARKI 171
|
| >3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} Length = 191 | Back alignment and structure |
|---|
Score = 134 bits (339), Expect = 2e-40
Identities = 49/179 (27%), Positives = 84/179 (46%), Gaps = 14/179 (7%)
Query: 1 MALPSQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFT--- 57
L Q DY FKL+I+G+ GKT+F+ R+ F + T+G+ DF
Sbjct: 12 ENLYFQGNFDY-MFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGI-----DFKVKTV 65
Query: 58 --NCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCR-V 114
+ +++ WDTAGQE++ + YY I+M+D+T ++ V W +
Sbjct: 66 YRHEKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWATQIKTYS 125
Query: 115 CENIPIVLCGNKVDVKN-RQVKAKQV-TFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
+N ++L GNK D++ R V ++ + ++E SAK N + + F L +
Sbjct: 126 WDNAQVILVGNKCDMEEERVVPTEKGQLLAEQLGFDFFEASAKENISVRQAFERLVDAI 184
|
| >2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A* Length = 191 | Back alignment and structure |
|---|
Score = 134 bits (339), Expect = 2e-40
Identities = 53/178 (29%), Positives = 91/178 (51%), Gaps = 18/178 (10%)
Query: 4 PSQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFT-----N 58
Y FK +I+GD G GK+ + + F+ ++ TIGV +F +
Sbjct: 13 GLVPRGSY-LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGV-----EFGARMVNID 66
Query: 59 CGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-EN 117
+I+ WDTAGQE F + YY A++++D+T R T+ ++ +W D + N
Sbjct: 67 GKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSN 126
Query: 118 IPIVLCGNKVDVKN-RQV---KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
+ I+L GNK D+++ R V + + F R+ L + E SAK+ N E+ F+ A+++
Sbjct: 127 MVIMLIGNKSDLESRRDVKREEGEA--FAREHGLIFMETSAKTACNVEEAFINTAKEI 182
|
| >3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum} Length = 208 | Back alignment and structure |
|---|
Score = 134 bits (340), Expect = 2e-40
Identities = 50/196 (25%), Positives = 80/196 (40%), Gaps = 39/196 (19%)
Query: 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVE------------------------ 49
+K V++G+ GK++ V R F + TIG
Sbjct: 8 YKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEKNNN 67
Query: 50 -------------VHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVT 96
++ N I+F WDTAGQE++ + YY CAI++FD++
Sbjct: 68 INSINDDNNVIITNQHNNYNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAIVVFDIS 127
Query: 97 ARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQV-TFHRKKNLQYYEISAK 155
T TW L ++ N I+L NK+D QV +V + + NL + + SAK
Sbjct: 128 NSNTLDRAKTWVNQL-KISSNYIIILVANKIDKNKFQVDILEVQKYAQDNNLLFIQTSAK 186
Query: 156 SNYNFEKPFLYLARKL 171
+ N + F LA ++
Sbjct: 187 TGTNIKNIFYMLAEEI 202
|
| >2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A* Length = 189 | Back alignment and structure |
|---|
Score = 133 bits (337), Expect = 3e-40
Identities = 47/175 (26%), Positives = 85/175 (48%), Gaps = 14/175 (8%)
Query: 5 SQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFT-----NC 59
+ DY FKL+++G+ GKT+F+ R+ F + T+G+ DF +
Sbjct: 15 VPRGSDY-MFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGI-----DFKVKTVYRHD 68
Query: 60 GKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCR-VCENI 118
+I+ WDTAGQE++ + YY ++M+D+ + ++ V W + +N
Sbjct: 69 KRIKLQIWDTAGQERYRTITTAYYRGAMGFLLMYDIANQESFAAVQDWATQIKTYSWDNA 128
Query: 119 PIVLCGNKVDVKN-RQVKAKQV-TFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
++L GNK D+++ R V A+ +++E SAK N N ++ F L +
Sbjct: 129 QVILVGNKCDLEDERVVPAEDGRRLADDLGFEFFEASAKENINVKQVFERLVDVI 183
|
| >2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C Length = 208 | Back alignment and structure |
|---|
Score = 133 bits (338), Expect = 4e-40
Identities = 39/185 (21%), Positives = 70/185 (37%), Gaps = 23/185 (12%)
Query: 4 PSQQTVDYPSFKLVIVGDGGTGKTTFVKR--HLTGEFEKKYEPTIGVEVHPLDFFT---- 57
P T K+ +VG+ GK+ + +F K Y T GV +
Sbjct: 12 PIDITATL-RCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGV-----EVVVAPVT 65
Query: 58 -NCGKIRF--YCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDL--- 111
+ + DTAG + + Y+ AI++FDV++ ++++ W L
Sbjct: 66 IPDTTVSVELFLLDTAGSDLYKEQISQYWNGVYYAILVFDVSSMESFESCKAWFELLKSA 125
Query: 112 -CRVCENIPIVLCGNKVDVKN--RQVKAKQV-TFHRKKNLQYYEISAK-SNYNFEKPFLY 166
+ VL NK D+ QV+ + L ++++SA + + PFL
Sbjct: 126 RPDRERPLRAVLVANKTDLPPQRHQVRLDMAQDWATTNTLDFFDVSANPPGKDADAPFLS 185
Query: 167 LARKL 171
+A
Sbjct: 186 IATTF 190
|
| >3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A* Length = 166 | Back alignment and structure |
|---|
Score = 132 bits (335), Expect = 4e-40
Identities = 32/165 (19%), Positives = 67/165 (40%), Gaps = 16/165 (9%)
Query: 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFT-----NCGKIRFYCWD 68
+K++++G G GK+ + G + G + + + +D
Sbjct: 3 YKVLLLGAPGVGKSALARI-FGGVEDGPEAEAAG------HTYDRSIVVDGEEASLMVYD 55
Query: 69 TAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNK 126
Q+ L G +I++ VT + +++ L R +++PI+L GNK
Sbjct: 56 IWEQDGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNK 115
Query: 127 VD-VKNRQVKAKQ-VTFHRKKNLQYYEISAKSNYNFEKPFLYLAR 169
D V++R+V + + ++ E SA ++N + F + R
Sbjct: 116 SDLVRSREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVVR 160
|
| >2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens} Length = 199 | Back alignment and structure |
|---|
Score = 133 bits (336), Expect = 7e-40
Identities = 47/182 (25%), Positives = 81/182 (44%), Gaps = 20/182 (10%)
Query: 4 PSQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFT-----N 58
+ ++K+V+ GD GK++F+ R EF + T+GV DF +
Sbjct: 20 AKSFSSQK-AYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGV-----DFQMKTLIVD 73
Query: 59 CGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCR-VCEN 117
+ WDTAGQE+F + Y+ ++++DVT ++ N+ W + E
Sbjct: 74 GERTVLQLWDTAGQERFRSIAKSYFRKADGVLLLYDVTCEKSFLNIREWVDMIEDAAHET 133
Query: 118 IPIVLCGNKVDVKN-------RQVKAKQV-TFHRKKNLQYYEISAKSNYNFEKPFLYLAR 169
+PI+L GNK D+++ + V + E SAK N + L+LAR
Sbjct: 134 VPIMLVGNKADIRDTAATEGQKCVPGHFGEKLAMTYGALFCETSAKDGSNIVEAVLHLAR 193
Query: 170 KL 171
++
Sbjct: 194 EV 195
|
| >3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens} Length = 199 | Back alignment and structure |
|---|
Score = 132 bits (334), Expect = 1e-39
Identities = 54/175 (30%), Positives = 86/175 (49%), Gaps = 14/175 (8%)
Query: 5 SQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFT-----NC 59
DY FKL+++GD G GK+ + R + + Y TIGV DF +
Sbjct: 26 MNPEYDY-LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGV-----DFKIRTIELDG 79
Query: 60 GKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCR-VCENI 118
I+ WDTAGQE+F + YY I+++DVT + ++ NV W +++ R EN+
Sbjct: 80 KTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENV 139
Query: 119 PIVLCGNKVDVKN-RQVKAKQ-VTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
+L GNK D+ + V F + + E SAK+ N E+ F+ +A ++
Sbjct: 140 NKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEI 194
|
| >1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8 Length = 203 | Back alignment and structure |
|---|
Score = 132 bits (334), Expect = 1e-39
Identities = 48/170 (28%), Positives = 84/170 (49%), Gaps = 14/170 (8%)
Query: 10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFT-----NCGKIRF 64
DY FK++I+G+ GKT+F+ R+ F + T+G+ DF N +I+
Sbjct: 6 DY-MFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGI-----DFKVKTIYRNDKRIKL 59
Query: 65 YCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCR-VCENIPIVLC 123
WDTAG E++ + YY I+M+D+T ++ V W + +N ++L
Sbjct: 60 QIWDTAGLERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLV 119
Query: 124 GNKVDVKN-RQVKAKQV-TFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
GNK D+++ R V +++ +++E SAK N N ++ F L +
Sbjct: 120 GNKCDMEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLVDVI 169
|
| >2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A* Length = 183 | Back alignment and structure |
|---|
Score = 131 bits (333), Expect = 1e-39
Identities = 54/173 (31%), Positives = 88/173 (50%), Gaps = 14/173 (8%)
Query: 7 QTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFT-----NCGK 61
+T DY FKL+++GD G GKT + R F + TIG+ DF + +
Sbjct: 3 KTYDY-LFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGI-----DFKIRTIELDGKR 56
Query: 62 IRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCR-VCENIPI 120
I+ WDTAGQE+F + YY ++++D+T ++ N+ W R++ ++
Sbjct: 57 IKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEK 116
Query: 121 VLCGNKVDVKN-RQVKAKQ-VTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
++ GNK DV + RQV ++ +++ E SAK+N N E F LAR +
Sbjct: 117 MILGNKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARDI 169
|
| >3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens} Length = 196 | Back alignment and structure |
|---|
Score = 131 bits (332), Expect = 2e-39
Identities = 54/175 (30%), Positives = 86/175 (49%), Gaps = 14/175 (8%)
Query: 5 SQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFT-----NC 59
DY FKL+++GD G GK+ + R + + Y TIGV DF +
Sbjct: 9 MNPEYDY-LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGV-----DFKIRTIELDG 62
Query: 60 GKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCR-VCENI 118
I+ WDTAGQE+F + YY I+++DVT + ++ NV W +++ R EN+
Sbjct: 63 KTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENV 122
Query: 119 PIVLCGNKVDVKN-RQVKAKQ-VTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
+L GNK D+ + V F + + E SAK+ N E+ F+ +A ++
Sbjct: 123 NKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEI 177
|
| >3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae} Length = 223 | Back alignment and structure |
|---|
Score = 131 bits (332), Expect = 4e-39
Identities = 53/176 (30%), Positives = 87/176 (49%), Gaps = 14/176 (7%)
Query: 4 PSQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFT-----N 58
D FK+V++GD G GK+ + R EF + TIGV +F T
Sbjct: 5 DYGYDYDL-LFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGV-----EFATRTLEIE 58
Query: 59 CGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCR-VCEN 117
+I+ WDTAGQE++ + YY A+I++D++ +Y+N W +L +N
Sbjct: 59 GKRIKAQIWDTAGQERYRAITSAYYRGAVGALIVYDISKSSSYENCNHWLSELRENADDN 118
Query: 118 IPIVLCGNKVDVKN-RQVKAKQV-TFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
+ + L GNK D+ + R V ++ TF ++ L + E SA ++ N +K F L +
Sbjct: 119 VAVGLIGNKSDLAHLRAVPTEESKTFAQENQLLFTETSALNSENVDKAFEELINTI 174
|
| >2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens} Length = 175 | Back alignment and structure |
|---|
Score = 130 bits (329), Expect = 4e-39
Identities = 33/167 (19%), Positives = 67/167 (40%), Gaps = 17/167 (10%)
Query: 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFT-----NCGKIRFYCWD 68
+++V++GD G GKT+ + +E D + + D
Sbjct: 5 YRVVLLGDPGVGKTSLASLFAGKQERDLHEQLGE------DVYERTLTVDGEDTTLVVVD 58
Query: 69 TAGQEKFGG--LRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCG 124
T EK ++ G +I++ + R ++++ L R +++PI+L G
Sbjct: 59 TWEAEKLDKSWSQESCLQGGSAYVIVYSIADRGSFESASELRIQLRRTHQADHVPIILVG 118
Query: 125 NKVD-VKNRQVKAKQ-VTFHRKKNLQYYEISAKSNYNFEKPFLYLAR 169
NK D + R+V ++ + ++ E SA +N + F + R
Sbjct: 119 NKADLARCREVSVEEGRACAVVFDCKFIETSATLQHNVAELFEGVVR 165
|
| >2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens} Length = 201 | Back alignment and structure |
|---|
Score = 130 bits (328), Expect = 1e-38
Identities = 61/177 (34%), Positives = 90/177 (50%), Gaps = 15/177 (8%)
Query: 4 PSQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFT-----N 58
+ D+ FKLV+VGD GKT V+R TG F ++ TIGV DF
Sbjct: 21 DPDEQYDF-LFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGV-----DFTMKTLEIQ 74
Query: 59 CGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCR-VCEN 117
+++ WDTAGQE+F + YY AI+ +D+T R ++ +VP W D+ + N
Sbjct: 75 GKRVKLQIWDTAGQERFRTITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYAGSN 134
Query: 118 IPIVLCGNKVDVKN-RQVKAKQV-TFHRKKN-LQYYEISAKSNYNFEKPFLYLARKL 171
I +L GNK D+ R+V + + + L E SAK + N E+ FL +A +L
Sbjct: 135 IVQLLIGNKSDLSELREVSLAEAQSLAEHYDILCAIETSAKDSSNVEEAFLRVATEL 191
|
| >2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8 Length = 211 | Back alignment and structure |
|---|
Score = 130 bits (328), Expect = 1e-38
Identities = 38/182 (20%), Positives = 77/182 (42%), Gaps = 23/182 (12%)
Query: 2 ALPSQQTVDYPSFKLVIVGDGGTGKTTFVKR--HLTGEFEKKYEPTIGVEVHPLDFFT-- 57
++ S ++ + +++V++G+ G GK+T + + E D +
Sbjct: 27 SVISSESGNTY-YRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGE------DTYERT 79
Query: 58 ------NCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDL 111
+ I W+ G+ ++ L D G +I++ +T R +++ L
Sbjct: 80 LMVDGESATIILLDMWENKGENEW--LHDHCMQVGDAYLIVYSITDRASFEKASELRIQL 137
Query: 112 CRV--CENIPIVLCGNKVD-VKNRQVKAKQ-VTFHRKKNLQYYEISAKSNYNFEKPFLYL 167
R E+IPI+L GNK D V+ R+V + + ++ E SA +N ++ F +
Sbjct: 138 RRARQTEDIPIILVGNKSDLVRCREVSVSEGRACAVVFDCKFIETSAAVQHNVKELFEGI 197
Query: 168 AR 169
R
Sbjct: 198 VR 199
|
| >2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A* Length = 206 | Back alignment and structure |
|---|
Score = 129 bits (326), Expect = 2e-38
Identities = 53/173 (30%), Positives = 84/173 (48%), Gaps = 14/173 (8%)
Query: 7 QTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFT-----NCGK 61
DY FKL+++G+ G GK+ + R + Y TIGV DF +
Sbjct: 3 SEYDY-LFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGV-----DFKIKTVELDGKT 56
Query: 62 IRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-ENIPI 120
++ WDTAGQE+F + YY II++DVT + ++ V W +++ R +
Sbjct: 57 VKLQIWDTAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLK 116
Query: 121 VLCGNKVDVKN-RQVKAKQ-VTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
+L GNK D+K+ R V+ F + + E SA + N E FL +AR++
Sbjct: 117 LLVGNKCDLKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMARQI 169
|
| >2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 Length = 180 | Back alignment and structure |
|---|
Score = 128 bits (324), Expect = 3e-38
Identities = 51/171 (29%), Positives = 88/171 (51%), Gaps = 15/171 (8%)
Query: 10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEF-EKKYEPTIGVEVHPLDFFT-----NCGKIR 63
D +FK+++VGD G GKT + R G F + T+G+ DF + K++
Sbjct: 8 DV-AFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGI-----DFRNKVLDVDGVKVK 61
Query: 64 FYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCR-VCENIPIVL 122
WDTAGQE+F + YY ++++DVT + ++ N+ W ++ ++ ++L
Sbjct: 62 LQMWDTAGQERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALML 121
Query: 123 CGNKVDVKN-RQVKAKQ-VTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
GNKVD + R VK + ++ L + E SAK+ N + F +A++L
Sbjct: 122 LGNKVDSAHERVVKREDGEKLAKEYGLPFMETSAKTGLNVDLAFTAIAKEL 172
|
| >2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens} Length = 192 | Back alignment and structure |
|---|
Score = 128 bits (323), Expect = 4e-38
Identities = 52/176 (29%), Positives = 96/176 (54%), Gaps = 15/176 (8%)
Query: 5 SQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFT-----NC 59
S + D+ +++I+G G GKT+ ++R F + + T+GV DF
Sbjct: 19 SPRPADF-KLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGV-----DFKIKTVELRG 72
Query: 60 GKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCR-VCENI 118
KIR WDTAGQE+F + YY + I+++D+T + T+ ++P W + + + E+
Sbjct: 73 KKIRLQIWDTAGQERFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDA 132
Query: 119 PIVLCGNKVDVK-NRQVKAKQ-VTFHRKKN-LQYYEISAKSNYNFEKPFLYLARKL 171
++L GNK+D + +R++ +Q F ++ +++ E SAK N+N ++ FL L +
Sbjct: 133 ELLLVGNKLDCETDREITRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKLVDDI 188
|
| >2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 Length = 196 | Back alignment and structure |
|---|
Score = 128 bits (323), Expect = 5e-38
Identities = 46/170 (27%), Positives = 78/170 (45%), Gaps = 17/170 (10%)
Query: 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFT-----NCGKIRFYC 66
KL I G G GK+ V R LT F +Y+PT+ + + +
Sbjct: 27 AEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLE------STYRHQATIDDEVVSMEI 80
Query: 67 WDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCG 124
DTAGQE R+G+ G+ ++++D+T R +++ V L + +N+ ++L G
Sbjct: 81 LDTAGQEDT-IQREGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVG 139
Query: 125 NKVD-VKNRQVKAKQ-VTFHRKKNLQYYEISAKSNY-NFEKPFLYLARKL 171
NK D +RQV ++ + +YE SA + N + F L R++
Sbjct: 140 NKADLDHSRQVSTEEGEKLATELACAFYECSACTGEGNITEIFYELCREV 189
|
| >1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B* Length = 189 | Back alignment and structure |
|---|
Score = 126 bits (319), Expect = 2e-37
Identities = 56/185 (30%), Positives = 93/185 (50%), Gaps = 23/185 (12%)
Query: 2 ALPSQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNC-- 59
+L + + FK++++GD GKT R G F + E TIGV DF
Sbjct: 10 SLVPRGSRSR-IFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGV-----DFRERAVD 63
Query: 60 --GK-IRFYCWDTAGQEKF-GGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCR-- 113
G+ I+ WDTAGQE+F + YY + + ++D+T ++ ++P W + +
Sbjct: 64 IDGERIKIQLWDTAGQERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHL 123
Query: 114 VCENIPIVLCGNKVDVKN-RQV---KAKQVTFHRKKNLQYYEISAKS---NYNFEKPFLY 166
+ +IP +L GNK D+++ QV A++ F ++ +E SAK+ N + E F+
Sbjct: 124 LANDIPRILVGNKCDLRSAIQVPTDLAQK--FADTHSMPLFETSAKNPNDNDHVEAIFMT 181
Query: 167 LARKL 171
LA KL
Sbjct: 182 LAHKL 186
|
| >2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A* Length = 192 | Back alignment and structure |
|---|
Score = 126 bits (318), Expect = 3e-37
Identities = 37/170 (21%), Positives = 73/170 (42%), Gaps = 18/170 (10%)
Query: 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFT--------NCGKIRFY 65
+++V++G+ G GK+T + + E D + + I
Sbjct: 7 YRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGE----DTYERTLMVDGESATIILLD 62
Query: 66 CWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLC 123
W+ G+ ++ L D G +I++ +T R +++ L R E+IPI+L
Sbjct: 63 MWENKGENEW--LHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILV 120
Query: 124 GNKVD-VKNRQVKAKQV-TFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
GNK D V+ R+V + + ++ E SA +N ++ F + R++
Sbjct: 121 GNKSDLVRXREVSVSEGRAXAVVFDXKFIETSAAVQHNVKELFEGIVRQV 170
|
| >3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} Length = 184 | Back alignment and structure |
|---|
Score = 125 bits (316), Expect = 4e-37
Identities = 37/176 (21%), Positives = 70/176 (39%), Gaps = 34/176 (19%)
Query: 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGV---------EVHPLDFFTNCGKI 62
P K+ IVG+ +GK+ V R+LTG + ++ P G + + L
Sbjct: 19 PELKVGIVGNLSSGKSALVHRYLTGTYVQEESPEGGRFKKEIVVDGQSYLLLI------- 71
Query: 63 RFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPI 120
D G + + + +F + ++++ V + LC +P+
Sbjct: 72 ----RDEGGPPEL-----QFAAWVDAVVFVFSLEDEISFQTVYNYFLRLCSFRNASEVPM 122
Query: 121 VLCGNKVDVKN---RQV---KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARK 170
VL G + + R + +A++++ K YYE A N E+ F +A+K
Sbjct: 123 VLVGTQDAISAANPRVIDDSRARKLS-TDLKRCTYYETCATYGLNVERVFQDVAQK 177
|
| >1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 170 | Back alignment and structure |
|---|
Score = 123 bits (310), Expect = 2e-36
Identities = 56/170 (32%), Positives = 89/170 (52%), Gaps = 16/170 (9%)
Query: 13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFT-----NCGKIRFYCW 67
S KLV++G+ GK++ V R ++ +F + EPTIG F T N ++F W
Sbjct: 3 SIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGA-----AFLTQRVTINEHTVKFEIW 57
Query: 68 DTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNK 126
DTAGQE+F L YY + Q A++++DVT ++ W ++L ++I I L GNK
Sbjct: 58 DTAGQERFASLAPXYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNK 117
Query: 127 VDVK----NRQVKAKQV-TFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
+D R+V ++ +K L ++E SAK+ N FL + K+
Sbjct: 118 IDXLQEGGERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVFLGIGEKI 167
|
| >2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A Length = 178 | Back alignment and structure |
|---|
Score = 121 bits (306), Expect = 1e-35
Identities = 31/174 (17%), Positives = 63/174 (36%), Gaps = 26/174 (14%)
Query: 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFT-----NCGKIRFYC 66
P +L ++GD +GK++ + R LTG ++ E T + + +
Sbjct: 6 PELRLGVLGDARSGKSSLIHRFLTGSYQ-VLEKTES------EQYKKEMLVDGQTHLVLI 58
Query: 67 WDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV----CENIPIVL 122
+ AG + I +F + +++ V H L + + + L
Sbjct: 59 REEAGAP-----DAKFSGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALAL 113
Query: 123 --CGNKVDVKN-RQVKAKQVT--FHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
+++ + R V + K YYE A N ++ F +A+K+
Sbjct: 114 VGTQDRISASSPRVVGDARARALXADMKRCSYYETXATYGLNVDRVFQEVAQKV 167
|
| >2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B* Length = 184 | Back alignment and structure |
|---|
Score = 118 bits (298), Expect = 2e-34
Identities = 28/179 (15%), Positives = 67/179 (37%), Gaps = 26/179 (14%)
Query: 14 FKLVIVGDGGTGKTTFVKRHLTGEF--EKKYEPTIGVEVHPLDFFT--------NCGKIR 63
KL+IVG+ G+GKTT +++ + + T+G+ D +
Sbjct: 3 MKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGI-----DVKDWPIQIRDKRKRDLV 57
Query: 64 FYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLT-YKNVPTWHRDLCRVCENIPIVL 122
WD AG+E+F + + ++D++ + W ++ + P++L
Sbjct: 58 LNVWDFAGREEFYSTHPHFMTQRALYLAVYDLSKGQAEVDAMKPWLFNIKARASSSPVIL 117
Query: 123 CGNKVDVKNRQVKAKQVT-----FHRKKNLQ-----YYEISAKSNYNFEKPFLYLARKL 171
G +DV + + + ++ K+ ++ + + + K + +
Sbjct: 118 VGTHLDVSDEKQRKACMSKITKELLNKRGFPAIRDYHFVNATEESDALAKLRKTIINES 176
|
| >3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens} Length = 187 | Back alignment and structure |
|---|
Score = 117 bits (295), Expect = 6e-34
Identities = 37/181 (20%), Positives = 74/181 (40%), Gaps = 22/181 (12%)
Query: 1 MALPSQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFT--- 57
L Q ++ L I+G G GK+ + LT F +Y+P + D ++
Sbjct: 12 ENLYFQGPLEV---NLAILGRRGAGKSALTVKFLTKRFISEYDPNLE------DTYSSEE 62
Query: 58 --NCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC 115
+ + DTA + + Y ++++ V +R ++ + ++ L
Sbjct: 63 TVDHQPVHLRVMDTADLDTPRNC-ERYLNWAHAFLVVYSVDSRQSFDSSSSYLELLALHA 121
Query: 116 ----ENIPIVLCGNKVD-VKNRQVKAKQ-VTFHRKKNLQYYEISAKSNY-NFEKPFLYLA 168
+IP +L GNK+D + RQV + V + ++E+SA ++ + + F
Sbjct: 122 KETQRSIPALLLGNKLDMAQYRQVTKAEGVALAGRFGCLFFEVSACLDFEHVQHVFHEAV 181
Query: 169 R 169
R
Sbjct: 182 R 182
|
| >3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* Length = 194 | Back alignment and structure |
|---|
Score = 117 bits (294), Expect = 1e-33
Identities = 45/165 (27%), Positives = 69/165 (41%), Gaps = 11/165 (6%)
Query: 13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQ 72
+ K+V+VGDG GKT + GE Y PT+ E + + WDTAGQ
Sbjct: 23 ALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVF-ENFSHVMKYKNEEFILHLWDTAGQ 81
Query: 73 EKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPT-WHRDLCRVCENIPIVLCGNKVDVKN 131
E++ LR Y ++ F V R ++ N+ T W ++ + VL G KVD+
Sbjct: 82 EEYDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYIDTAKTVLVGLKVDL-- 139
Query: 132 RQVKAKQVTFHRKKNL-------QYYEISAKSNYNFEKPFLYLAR 169
R+ + VT +L Y E S+ + + F
Sbjct: 140 RKDGSDDVTKQEGDDLCQKLGCVAYIEASSVAKIGLNEVFEKSVD 184
|
| >3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum} Length = 535 | Back alignment and structure |
|---|
Score = 122 bits (307), Expect = 3e-33
Identities = 36/181 (19%), Positives = 68/181 (37%), Gaps = 13/181 (7%)
Query: 1 MALPSQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG 60
+ V K+ ++GDG GKT+ +K+ + F+ K T G+ V G
Sbjct: 29 ARSKGEALVHLQEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKG 88
Query: 61 --------KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLC 112
+ F+ WD GQE + +++ D T N W R +
Sbjct: 89 LENDDELKECLFHFWDFGGQEIMHASHQFFMTRSSVYMLLLDSR---TDSNKHYWLRHIE 145
Query: 113 RVCENIPIVLCGNKVD-VKNRQVKAKQVT-FHRKKNLQYYEISAKSNYNFEKPFLYLARK 170
+ P+++ NK+D + ++ K++ +++ IS K+ E L
Sbjct: 146 KYGGKSPVIVVMNKIDENPSYNIEQKKINERFPAIENRFHRISCKNGDGVESIAKSLKSA 205
Query: 171 L 171
+
Sbjct: 206 V 206
|
| >2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana} Length = 212 | Back alignment and structure |
|---|
Score = 112 bits (282), Expect = 1e-31
Identities = 45/169 (26%), Positives = 74/169 (43%), Gaps = 13/169 (7%)
Query: 13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQ 72
K V VGDG GKT + + + +F Y PT+ + + + + WDTAGQ
Sbjct: 9 FIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTV-FDNFSANVAVDGQIVNLGLWDTAGQ 67
Query: 73 EKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPT-WHRDLCRVCENIPIVLCGNKVDVKN 131
E + LR Y ++ F + ++ +Y+NV W +L R N+PIVL G K+D+++
Sbjct: 68 EDYSRLRPLSYRGADIFVLAFSLISKASYENVLKKWMPELRRFAPNVPIVLVGTKLDLRD 127
Query: 132 ----RQVKAKQVTFH-------RKKNLQYYEISAKSNYNFEKPFLYLAR 169
+T + Y E S+K+ N + F +
Sbjct: 128 DKGYLADHTNVITSTQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIK 176
|
| >3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C Length = 182 | Back alignment and structure |
|---|
Score = 110 bits (277), Expect = 3e-31
Identities = 49/171 (28%), Positives = 74/171 (43%), Gaps = 15/171 (8%)
Query: 13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQ 72
K V VGDG GKT + + + F Y PT+ + + N + WDTAGQ
Sbjct: 8 FIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVF-DNFSANVVVNGATVNLGLWDTAGQ 66
Query: 73 EKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPT-WHRDLCRVCENIPIVLCGNKVDVKN 131
E + LR Y I+ F + ++ +Y+NV W +L +PIVL G K+D+++
Sbjct: 67 EDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIVLVGTKLDLRD 126
Query: 132 ------RQVKAKQVTFHRKKNL-------QYYEISAKSNYNFEKPFLYLAR 169
A +T + + L Y E S+KS N + F R
Sbjct: 127 DKQFFIDHPGAVPITTVQGEELKKLIGAPAYIECSSKSQENVKGVFDAAIR 177
|
| >3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens} Length = 204 | Back alignment and structure |
|---|
Score = 109 bits (273), Expect = 2e-30
Identities = 44/169 (26%), Positives = 79/169 (46%), Gaps = 17/169 (10%)
Query: 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAG 71
+ K V+VGDG GKT + + T F +Y PT+ + + + + + WDTAG
Sbjct: 29 QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAG 87
Query: 72 QEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPT-WHRDLCRVCENIPIVLCGNKVDVK 130
QE + LR Y +I F + + +++NV W+ ++ C N PI+L G K+D++
Sbjct: 88 QEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLR 147
Query: 131 N--------RQVKAKQVTFHRKKNL-------QYYEISAKSNYNFEKPF 164
+ ++ K +T+ + + +Y E SA + + F
Sbjct: 148 DDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 196
|
| >2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens} Length = 201 | Back alignment and structure |
|---|
Score = 108 bits (271), Expect = 3e-30
Identities = 44/163 (26%), Positives = 69/163 (42%), Gaps = 17/163 (10%)
Query: 13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQ 72
K V+VGDG GKT+ V + T + +Y PT + + +R DTAGQ
Sbjct: 20 GVKCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTA-FDNFSAVVSVDGRPVRLQLCDTAGQ 78
Query: 73 EKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPT-WHRDLCRVCENIPIVLCGNKVDVKN 131
++F LR Y + ++ F V + +++NV W ++ C PI+L G + D++
Sbjct: 79 DEFDKLRPLCYTNTDIFLLCFSVVSPSSFQNVSEKWVPEIRCHCPKAPIILVGTQSDLRE 138
Query: 132 --------RQVKAKQVTFH-------RKKNLQYYEISAKSNYN 159
+ K K V K Y E SA + N
Sbjct: 139 DVKVLIELDKCKEKPVPEEAAKLLAEEIKAASYIECSALTQKN 181
|
| >2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8 Length = 194 | Back alignment and structure |
|---|
Score = 107 bits (269), Expect = 5e-30
Identities = 42/168 (25%), Positives = 72/168 (42%), Gaps = 17/168 (10%)
Query: 13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQ 72
K V+VGDG GKT + + F ++Y PT+ + + + + +DTAGQ
Sbjct: 18 MLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTV-FDHYAVSVTVGGKQYLLGLYDTAGQ 76
Query: 73 EKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPT-WHRDLCRVCENIPIVLCGNKVDVKN 131
E + LR Y +I F V +++NV W +L N+P +L G ++D+++
Sbjct: 77 EDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPFLLIGTQIDLRD 136
Query: 132 --------RQVKAKQVTFHRKKNL-------QYYEISAKSNYNFEKPF 164
+K K + + + L Y E SA + + F
Sbjct: 137 DPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVECSALTQKGLKTVF 184
|
| >2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens} Length = 214 | Back alignment and structure |
|---|
Score = 107 bits (270), Expect = 7e-30
Identities = 50/173 (28%), Positives = 86/173 (49%), Gaps = 17/173 (9%)
Query: 13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQ 72
S K+V+VGDGG GKT+ + G F + Y PT+ E + ++ + + WDTAGQ
Sbjct: 34 SVKVVLVGDGGCGKTSLLMVFADGAFPESYTPTVF-ERYMVNLQVKGKPVHLHIWDTAGQ 92
Query: 73 EKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPT-WHRDLCRVCENIPIVLCGNKVDVKN 131
+ + LR +Y ++ FDVT+ ++ N+ W+ ++ C+ +PI++ G K D++
Sbjct: 93 DDYDRLRPLFYPDASVLLLCFDVTSPNSFDNIFNRWYPEVNHFCKKVPIIVVGCKTDLRK 152
Query: 132 --------RQVKAKQVTFHRKKNL-------QYYEISAKSNYNFEKPFLYLAR 169
R+ + VT+HR + + Y E SA+ + N F A
Sbjct: 153 DKSLVNKLRRNGLEPVTYHRGQEMARSVGAVAYLECSARLHDNVHAVFQEAAE 205
|
| >2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ... Length = 201 | Back alignment and structure |
|---|
Score = 106 bits (267), Expect = 1e-29
Identities = 49/178 (27%), Positives = 81/178 (45%), Gaps = 17/178 (9%)
Query: 3 LPSQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKI 62
+P + KLVIVGDG GKT + +F + Y PT+ E + D + ++
Sbjct: 15 VPRGSHMAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVF-ENYIADIEVDGKQV 73
Query: 63 RFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPT-WHRDLCRVCENIPIV 121
WDTAGQE + LR Y ++ F + + + +N+P W ++ C N+PI+
Sbjct: 74 ELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPII 133
Query: 122 LCGNKVDVKN--------RQVKAKQVTFHRKKNL-------QYYEISAKSNYNFEKPF 164
L GNK D++ ++K + V +++ Y E SAK+ + F
Sbjct: 134 LVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTKEGVREVF 191
|
| >1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B* Length = 184 | Back alignment and structure |
|---|
Score = 104 bits (261), Expect = 7e-29
Identities = 40/161 (24%), Positives = 67/161 (41%), Gaps = 17/161 (10%)
Query: 15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK 74
K+V+VGD GKT + F + Y PT+ E + F + +I WDT+G
Sbjct: 9 KIVVVGDSQCGKTALLHVFAKDCFPENYVPTVF-ENYTASFEIDTQRIELSLWDTSGSPY 67
Query: 75 FGGLRDGYYIHGQCAIIMFDVTARLTYKNVPT-WHRDLCRVCENIPIVLCGNKVDVKN-- 131
+ +R Y +I FD++ T +V W ++ C N ++L G K D++
Sbjct: 68 YDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDV 127
Query: 132 ------RQVKAKQVTFHRKKNL-------QYYEISAKSNYN 159
+ V++ + N+ Y E SA + N
Sbjct: 128 STLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSEN 168
|
| >2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 Length = 207 | Back alignment and structure |
|---|
Score = 104 bits (261), Expect = 1e-28
Identities = 48/166 (28%), Positives = 77/166 (46%), Gaps = 17/166 (10%)
Query: 15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK 74
KLV+VGDG GKT + EF + Y PT+ E + D + ++ WDTAGQE
Sbjct: 27 KLVVVGDGACGKTCLLIVFSKDEFPEVYVPTV-FENYVADIEVDGKQVELALWDTAGQED 85
Query: 75 FGGLRDGYYIHGQCAIIMFDVTARLTYKNVPT-WHRDLCRVCENIPIVLCGNKVDVKN-- 131
+ LR Y ++ F V + + +N+P W ++ C N+PI+L NK D+++
Sbjct: 86 YDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHFCPNVPIILVANKKDLRSDE 145
Query: 132 ------RQVKAKQVTFHRKKNL-------QYYEISAKSNYNFEKPF 164
++K + V + + Y E SAK+ + F
Sbjct: 146 HVRTELARMKQEPVRTDDGRAMAVRIQAYDYLECSAKTKEGVREVF 191
|
| >1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8 Length = 205 | Back alignment and structure |
|---|
Score = 103 bits (258), Expect = 3e-28
Identities = 40/163 (24%), Positives = 67/163 (41%), Gaps = 17/163 (10%)
Query: 13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQ 72
K+V+VGD GKT + F + Y PT+ E + F + +I WDT+G
Sbjct: 28 KCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVF-ENYTASFEIDTQRIELSLWDTSGS 86
Query: 73 EKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPT-WHRDLCRVCENIPIVLCGNKVDVKN 131
+ +R Y +I FD++ T +V W ++ C N ++L G K D++
Sbjct: 87 PYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRT 146
Query: 132 --------RQVKAKQVTFHRKKNL-------QYYEISAKSNYN 159
+ V++ + N+ Y E SA + N
Sbjct: 147 DVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSEN 189
|
| >1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ... Length = 186 | Back alignment and structure |
|---|
Score = 101 bits (253), Expect = 1e-27
Identities = 44/168 (26%), Positives = 79/168 (47%), Gaps = 17/168 (10%)
Query: 13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQ 72
+ K V+VGDG GKT + + T F +Y PT+ + + + + + WDTAGQ
Sbjct: 5 AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGQ 63
Query: 73 EKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPT-WHRDLCRVCENIPIVLCGNKVDVKN 131
E + LR Y ++I F + + +++NV W+ ++ C N PI+L G K+D+++
Sbjct: 64 EDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRD 123
Query: 132 --------RQVKAKQVTFH-------RKKNLQYYEISAKSNYNFEKPF 164
++ K +T+ ++Y E SA + + F
Sbjct: 124 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 171
|
| >3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A* Length = 214 | Back alignment and structure |
|---|
Score = 98.0 bits (244), Expect = 4e-26
Identities = 29/117 (24%), Positives = 51/117 (43%), Gaps = 2/117 (1%)
Query: 13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQ 72
KLV+VGD GKT ++ + + Y PT+ E + T ++ WDT+G
Sbjct: 27 RCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVF-ENYTACLETEEQRVELSLWDTSGS 85
Query: 73 EKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPT-WHRDLCRVCENIPIVLCGNKVD 128
+ +R Y ++ FD++ T + W ++ C + ++L G K D
Sbjct: 86 PYYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCPSTRVLLIGCKTD 142
|
| >3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens} Length = 255 | Back alignment and structure |
|---|
Score = 87.0 bits (215), Expect = 1e-21
Identities = 35/177 (19%), Positives = 60/177 (33%), Gaps = 19/177 (10%)
Query: 5 SQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVH---PLDFFTNCGK 61
S+ D K+ IV +T F+ + T + K
Sbjct: 86 SRSLEDCVECKMHIVE-----QTEFIDDQTFQP----HRSTALQPYIKRAAATKLASAEK 136
Query: 62 IRFYCWDTAGQEKF--GGLRDGYYIHGQCAIIMFDVT--ARLTYKNVPTWHRDLCRVC-- 115
+ ++C D G E+ + ++ DV+ + + + +L
Sbjct: 137 LMYFCTDQLGLEQDFEQKQMPDGKLLVDGFLLGIDVSRGMNRNFDDQLKFVSNLYNQLAK 196
Query: 116 ENIPIVLCGNKVDVKN-RQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
PIV+ K D R ++ KKNLQ E SA+SN N + F L + +
Sbjct: 197 TKKPIVVVLTKCDEGVERYIRDAHTFALSKKNLQVVETSARSNVNVDLAFSTLVQLI 253
|
| >3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A* Length = 198 | Back alignment and structure |
|---|
Score = 79.0 bits (195), Expect = 5e-19
Identities = 36/163 (22%), Positives = 58/163 (35%), Gaps = 20/163 (12%)
Query: 13 SFKLVIVGDGGTGKTTFVKR-------HLTGE---FEKKYEPTIGVEVHPLDFFTNCG-K 61
+FK+V G G +GKTT +K GE + E T+ + PLD G K
Sbjct: 14 NFKIVYYGPGLSGKTTNLKWIYSKVPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFK 73
Query: 62 IRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCE----- 116
RF+ + GQ + R + + D N + + E
Sbjct: 74 TRFHLYTVPGQVFYNASRKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYGLTL 133
Query: 117 -NIPIVLCGNKVDVKNRQVKAKQVT--FHRKKNLQYYEISAKS 156
++PIV+ NK D+ + + + V + E A
Sbjct: 134 DDVPIVIQVNKRDLPDA-LPVEMVRAVVDPEGKFPVLEAVATE 175
|
| >2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A* Length = 332 | Back alignment and structure |
|---|
Score = 79.3 bits (195), Expect = 3e-18
Identities = 41/172 (23%), Positives = 75/172 (43%), Gaps = 17/172 (9%)
Query: 4 PSQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIR 63
+ K V+VGDG GKT + + T F +Y PT+ + + + + +
Sbjct: 146 ENIDEAAKELIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVN 204
Query: 64 FYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPT-WHRDLCRVCENIPIVL 122
WDTAG E + LR Y +I F + + ++ +V W+ ++ C N PI+L
Sbjct: 205 LGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCPNTPIIL 264
Query: 123 CGNKVDVKN--------RQVKAKQVTFHRKKNL-------QYYEISAKSNYN 159
G K+D+++ ++ K +T+ + + +Y E SA +
Sbjct: 265 VGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRG 316
|
| >3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} Length = 307 | Back alignment and structure |
|---|
Score = 66.9 bits (163), Expect = 7e-14
Identities = 29/125 (23%), Positives = 54/125 (43%), Gaps = 14/125 (11%)
Query: 15 KLVIVGDGGTGKTTFVKR---HLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAG 71
KL+++G G+GK++ + + ++ TI VE L F N + WD G
Sbjct: 5 KLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHSHLRFLGN---MTLNLWDCGG 61
Query: 72 QEKF-----GGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHR---DLCRVCENIPIVLC 123
Q+ F +D + Q I +FDV + K++ + + L + + I +
Sbjct: 62 QDVFMENYFTKQKDHIFQMVQVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDAKIFVL 121
Query: 124 GNKVD 128
+K+D
Sbjct: 122 LHKMD 126
|
| >3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A* Length = 196 | Back alignment and structure |
|---|
Score = 59.6 bits (144), Expect = 1e-11
Identities = 18/122 (14%), Positives = 39/122 (31%), Gaps = 11/122 (9%)
Query: 15 KLVIVGDGGTGKTTFVKRHLTGEFEK---KYEPTIGVEVHPLDFFTNCGKIRFYCWDTAG 71
+++++G +GK++ K E T + + + + F WD G
Sbjct: 22 RILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTNKIYKDDISNSSF---VNFQIWDFPG 78
Query: 72 QEKFGGL---RDGYYIHGQCAIIMFDVTARLT--YKNVPTWHRDLCRVCENIPIVLCGNK 126
Q F + + I + D + +V ++ + +K
Sbjct: 79 QMDFFDPTFDYEMIFRGTGALIYVIDAQDDYMEALTRLHITVSKAYKVNPDMNFEVFIHK 138
Query: 127 VD 128
VD
Sbjct: 139 VD 140
|
| >1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A* Length = 188 | Back alignment and structure |
|---|
Score = 59.1 bits (144), Expect = 1e-11
Identities = 30/123 (24%), Positives = 54/123 (43%), Gaps = 12/123 (9%)
Query: 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
+L +VG +GKTTFV +G+F + PT+G + + G + WD GQ
Sbjct: 23 MELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRKITK----GNVTIKLWDIGGQP 78
Query: 74 KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCE-----NIPIVLCGNKVD 128
+F + + Y + M D + + + +L + + IP+++ GNK D
Sbjct: 79 RFRSMWERYCRGVSAIVYMVDAADQ---EKIEASKNELHNLLDKPQLQGIPVLVLGNKRD 135
Query: 129 VKN 131
+
Sbjct: 136 LPG 138
|
| >2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A* Length = 192 | Back alignment and structure |
|---|
Score = 56.5 bits (137), Expect = 1e-10
Identities = 32/123 (26%), Positives = 55/123 (44%), Gaps = 13/123 (10%)
Query: 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
++++VG GKTT + + GE PTIG V +++ I F WD GQ+
Sbjct: 30 MRILMVGLDAAGKTTILYKLKLGEIVTTI-PTIGFNVETVEY----KNICFTVWDVGGQD 84
Query: 74 KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCE-----NIPIVLCGNKVD 128
K L Y+ + Q I + D R + V +L ++ + + +++ NK D
Sbjct: 85 KIRPLWRHYFQNTQGLIFVVDSNDR---ERVQESADELQKMLQEDELRDAVLLVFANKQD 141
Query: 129 VKN 131
+ N
Sbjct: 142 MPN 144
|
| >1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 183 | Back alignment and structure |
|---|
Score = 56.1 bits (136), Expect = 1e-10
Identities = 30/123 (24%), Positives = 50/123 (40%), Gaps = 13/123 (10%)
Query: 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
+++I+G G GKTT + R GE +PTIG V L + ++ WD GQ
Sbjct: 19 LRILILGLDGAGKTTILYRLQIGEVVTT-KPTIGFNVETLSY----KNLKLNVWDLGGQT 73
Query: 74 KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCE-----NIPIVLCGNKVD 128
YY I + D T + + T ++L + + + +++ NK D
Sbjct: 74 SIRPYWRCYYADTAAVIFVVDSTDK---DRMSTASKELHLMLQEEELQDAALLVFANKQD 130
Query: 129 VKN 131
Sbjct: 131 QPG 133
|
| >1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ... Length = 164 | Back alignment and structure |
|---|
Score = 54.9 bits (133), Expect = 3e-10
Identities = 33/122 (27%), Positives = 54/122 (44%), Gaps = 13/122 (10%)
Query: 15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK 74
++++VG GKTT + + GE PTIG V +++ I F WD GQ+K
Sbjct: 2 RILMVGLDAAGKTTILYKLKLGEIVTTI-PTIGFNVETVEY----KNISFTVWDVGGQDK 56
Query: 75 FGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCE-----NIPIVLCGNKVDV 129
L Y+ + Q I + D R + V +L R+ + +++ NK D+
Sbjct: 57 IRPLWRHYFQNTQGLIFVVDSNDR---ERVNEAREELMRMLAEDELRDAVLLVFANKQDL 113
Query: 130 KN 131
N
Sbjct: 114 PN 115
|
| >1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A* Length = 171 | Back alignment and structure |
|---|
Score = 54.9 bits (133), Expect = 4e-10
Identities = 30/123 (24%), Positives = 48/123 (39%), Gaps = 13/123 (10%)
Query: 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
+++I+G G GKTT + R GE PTIG V + + ++F WD G
Sbjct: 8 MRILILGLDGAGKTTILYRLQVGEVVTT-IPTIGFNVETVTY----KNLKFQVWDLGGLT 62
Query: 74 KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCE-----NIPIVLCGNKVD 128
YY + I + D R + +L + E +V+ NK D
Sbjct: 63 SIRPYWRCYYSNTDAVIYVVDSCDR---DRIGISKSELVAMLEEEELRKAILVVFANKQD 119
Query: 129 VKN 131
++
Sbjct: 120 MEQ 122
|
| >1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8 Length = 187 | Back alignment and structure |
|---|
Score = 55.3 bits (134), Expect = 4e-10
Identities = 33/123 (26%), Positives = 51/123 (41%), Gaps = 13/123 (10%)
Query: 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
K++IVG GKTT + + E PTIG V + RF WD GQE
Sbjct: 17 HKVIIVGLDNAGKTTILYQFSMNEVVHTS-PTIGSNVEEIVI----NNTRFLMWDIGGQE 71
Query: 74 KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCE-----NIPIVLCGNKVD 128
+ YY + + I++ D T R + + +L ++ +++ NK D
Sbjct: 72 SLRSSWNTYYTNTEFVIVVVDSTDR---ERISVTREELYKMLAHEDLRKAGLLIFANKQD 128
Query: 129 VKN 131
VK
Sbjct: 129 VKE 131
|
| >1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A* Length = 186 | Back alignment and structure |
|---|
Score = 54.9 bits (133), Expect = 4e-10
Identities = 24/123 (19%), Positives = 47/123 (38%), Gaps = 13/123 (10%)
Query: 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
+L+++G GKTT +K+ + + PT+G + L+ + WD GQ+
Sbjct: 19 LRLLMLGLDNAGKTTILKKFNGEDVDTI-SPTLGFNIKTLEH----RGFKLNIWDVGGQK 73
Query: 74 KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCE-----NIPIVLCGNKVD 128
Y+ I + D R + + R+L + +++ NK D
Sbjct: 74 SLRSYWRNYFESTDGLIWVVDSADR---QRMQDCQRELQSLLVEERLAGATLLIFANKQD 130
Query: 129 VKN 131
+
Sbjct: 131 LPG 133
|
| >2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major} Length = 189 | Back alignment and structure |
|---|
Score = 53.8 bits (130), Expect = 1e-09
Identities = 26/123 (21%), Positives = 48/123 (39%), Gaps = 13/123 (10%)
Query: 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
+++++G GKT+ + R G+ PT+GV + L + I F WD GQ
Sbjct: 23 IRVLMLGLDNAGKTSILYRLHLGDV-VTTVPTVGVNLETLQY----KNISFEVWDLGGQT 77
Query: 74 KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCE-----NIPIVLCGNKVD 128
Y+ I + D T R + +L + + +++ NK D
Sbjct: 78 GVRPYWRCYFSDTDAVIYVVDSTDR---DRMGVAKHELYALLDEDELRKSLLLIFANKQD 134
Query: 129 VKN 131
+ +
Sbjct: 135 LPD 137
|
| >2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A* Length = 181 | Back alignment and structure |
|---|
Score = 53.4 bits (129), Expect = 2e-09
Identities = 33/123 (26%), Positives = 51/123 (41%), Gaps = 13/123 (10%)
Query: 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
K++IVG GKTT + + E PTIG V + RF WD GQE
Sbjct: 22 HKVIIVGLDNAGKTTILYQFSMNEVVHTS-PTIGSNVEEIVI----NNTRFLMWDIGGQE 76
Query: 74 KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCE-----NIPIVLCGNKVD 128
+ YY + + I++ D T R + + +L ++ +++ NK D
Sbjct: 77 SLRSSWNTYYTNTEFVIVVVDSTDR---ERISVTREELYKMLAHEDLRKAGLLIFANKQD 133
Query: 129 VKN 131
VK
Sbjct: 134 VKE 136
|
| >1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A* Length = 198 | Back alignment and structure |
|---|
Score = 53.0 bits (128), Expect = 2e-09
Identities = 24/122 (19%), Positives = 43/122 (35%), Gaps = 13/122 (10%)
Query: 15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK 74
KLV +G GKTT + ++ PT+ L + F +D G +
Sbjct: 27 KLVFLGLDNAGKTTLLHMLKDDRL-GQHVPTLHPTSEELTI----AGMTFTTFDLGGHIQ 81
Query: 75 FGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCE-----NIPIVLCGNKVDV 129
+ Y + + D + + +L + N+PI++ GNK+D
Sbjct: 82 ARRVWKNYLPAINGIVFLVDCADH---ERLLESKEELDSLMTDETIANVPILILGNKIDR 138
Query: 130 KN 131
Sbjct: 139 PE 140
|
| >1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A* Length = 181 | Back alignment and structure |
|---|
Score = 51.4 bits (124), Expect = 7e-09
Identities = 25/123 (20%), Positives = 48/123 (39%), Gaps = 13/123 (10%)
Query: 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
+++++G GKTT +K+ + + PT G + + + WD GQ
Sbjct: 17 VRILLLGLDNAGKTTLLKQLASEDISHI-TPTQGFNIKSVQS----QGFKLNVWDIGGQR 71
Query: 74 KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCE-----NIPIVLCGNKVD 128
K Y+ + I + D R K ++L + E +P+++ NK D
Sbjct: 72 KIRPYWRSYFENTDILIYVIDSADR---KRFEETGQELTELLEEEKLSCVPVLIFANKQD 128
Query: 129 VKN 131
+
Sbjct: 129 LLT 131
|
| >2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens} Length = 190 | Back alignment and structure |
|---|
Score = 51.9 bits (125), Expect = 7e-09
Identities = 28/126 (22%), Positives = 52/126 (41%), Gaps = 15/126 (11%)
Query: 14 FKLVIVGDGGTGKTTFVKRHLTGEFEK-KYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQ 72
++ +G +GKTT + + + PTIG + + F +D +GQ
Sbjct: 22 VHVLCLGLDNSGKTTIINKLKPSNAQSQNILPTIGFSIEKFKS----SSLSFTVFDMSGQ 77
Query: 73 EKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCE-------NIPIVLCGN 125
++ L + YY GQ I + D + R + +L + IPI+ N
Sbjct: 78 GRYRNLWEHYYKEGQAIIFVIDSSDR---LRMVVAKEELDTLLNHPDIKHRRIPILFFAN 134
Query: 126 KVDVKN 131
K+D+++
Sbjct: 135 KMDLRD 140
|
| >1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B* Length = 190 | Back alignment and structure |
|---|
Score = 48.0 bits (115), Expect = 2e-07
Identities = 26/124 (20%), Positives = 43/124 (34%), Gaps = 13/124 (10%)
Query: 13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQ 72
KL+ +G GKTT + +PT L G I+F +D G
Sbjct: 23 HGKLLFLGLDNAGKTTLLHMLKNDRLAT-LQPTWHPTSEELAI----GNIKFTTFDLGGH 77
Query: 73 EKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCE-----NIPIVLCGNKV 127
+ L Y+ + + D + +L + ++P V+ GNK+
Sbjct: 78 IQARRLWKDYFPEVNGIVFLVDAADP---ERFDEARVELDALFNIAELKDVPFVILGNKI 134
Query: 128 DVKN 131
D N
Sbjct: 135 DAPN 138
|
| >2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2 Length = 214 | Back alignment and structure |
|---|
Score = 45.5 bits (108), Expect = 1e-06
Identities = 24/126 (19%), Positives = 40/126 (31%), Gaps = 14/126 (11%)
Query: 15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK 74
++ VG +GKT R LTG++ +I N D G E
Sbjct: 9 AVLFVGLCDSGKTLLFVRLLTGQYRDTQ-TSITDSSAIYK-VNNNRGNSLTLIDLPGHES 66
Query: 75 FGGLRDGYYIH--GQCAIIMFDVTARLTYKNVPTWHRDLCRVCEN-------IPIVLCGN 125
LR ++F V + + V L +V + +++ N
Sbjct: 67 ---LRFQLLDRFKSSARAVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACN 123
Query: 126 KVDVKN 131
K D+
Sbjct: 124 KQDIAM 129
|
| >3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} Length = 331 | Back alignment and structure |
|---|
Score = 44.3 bits (104), Expect = 7e-06
Identities = 19/122 (15%), Positives = 41/122 (33%), Gaps = 15/122 (12%)
Query: 16 LVIVGDGGTGKTTFVKRHLTGEFEKKY----EPTIGVEVHPLDFFTNCGKIRFYCWDTAG 71
++++G GK++ K + + E T + I + G
Sbjct: 2 VLLMGVRRCGKSSICKV-VFHNMQPLDTLYLESTSNPSLEHFSTL-----IDLAVMELPG 55
Query: 72 QEKFGGLR-DGYYIHGQCAIIMFDVTARLTYKNVPTWHRD----LCRVCENIPIVLCGNK 126
Q + D + +++ + ++ Y N T +V +I I + +K
Sbjct: 56 QLNYFEPSYDSERLFKSVGALVYVIDSQDEYINAITNLAMIIEYAYKVNPSINIEVLIHK 115
Query: 127 VD 128
VD
Sbjct: 116 VD 117
|
| >2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae} Length = 193 | Back alignment and structure |
|---|
Score = 41.6 bits (98), Expect = 3e-05
Identities = 20/128 (15%), Positives = 38/128 (29%), Gaps = 18/128 (14%)
Query: 15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIG-VEVHPLDFFTNCGKIRFYCWDTAGQE 73
++I G +GKT+ + T + + D D G
Sbjct: 50 SIIIAGPQNSGKTSLLTLLTTDSVRPTV-VSQEPLSAADYD------GSGVTLVDFPGHV 102
Query: 74 KFGGLRDGYYIHGQCAI--IMFDVTARLTYKNVPTWHRDLCRV--------CENIPIVLC 123
K Y + ++F V + + K + T L + I I++
Sbjct: 103 KLRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIA 162
Query: 124 GNKVDVKN 131
NK ++
Sbjct: 163 CNKSELFT 170
|
| >1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 218 | Back alignment and structure |
|---|
Score = 40.9 bits (96), Expect = 6e-05
Identities = 19/127 (14%), Positives = 38/127 (29%), Gaps = 18/127 (14%)
Query: 16 LVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIG-VEVHPLDFFTNCGKIRFYCWDTAGQEK 74
++I G +GKT+ + T + + + D G K
Sbjct: 15 IIIAGPQNSGKTSLLTLLTTDSVRPTV-VSQEPLSA------ADYDGSGVTLVDFPGHVK 67
Query: 75 FGGLRDGYYIHGQCAI--IMFDVTARLTYKNVPTWHRDLCRV--------CENIPIVLCG 124
Y + ++F V + + K + T L + I I++
Sbjct: 68 LRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIAC 127
Query: 125 NKVDVKN 131
NK ++
Sbjct: 128 NKSELFT 134
|
| >2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} Length = 427 | Back alignment and structure |
|---|
Score = 40.9 bits (95), Expect = 9e-05
Identities = 13/63 (20%), Positives = 27/63 (42%), Gaps = 4/63 (6%)
Query: 13 SFKLVIVGDGGTGKTTFV----KRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWD 68
F ++ VG+ G GK+T + GE +P + ++ + D + +++
Sbjct: 42 CFNILCVGETGLGKSTLMDTLFNTKFEGEPATHTQPGVQLQSNTYDLQESNVRLKLTIVS 101
Query: 69 TAG 71
T G
Sbjct: 102 TVG 104
|
| >3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens} Length = 329 | Back alignment and structure |
|---|
Score = 39.5 bits (92), Expect = 3e-04
Identities = 33/136 (24%), Positives = 55/136 (40%), Gaps = 13/136 (9%)
Query: 1 MALPSQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG 60
+ ++++VG GKTT + + GE PTIG V +++
Sbjct: 153 TPPQPRGLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVETVEY----K 207
Query: 61 KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCE---- 116
I F WD GQ+K L Y+ + Q I + D R + V +L R+
Sbjct: 208 NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR---ERVNEAREELMRMLAEDEL 264
Query: 117 -NIPIVLCGNKVDVKN 131
+ +++ NK D+ N
Sbjct: 265 RDAVLLVFANKQDLPN 280
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 176 | |||
| 4dkx_A | 216 | RAS-related protein RAB-6A; GTP binding fold, memb | 100.0 | |
| 3kkq_A | 183 | RAS-related protein M-RAS; GTP-binding, GTPase, si | 100.0 | |
| 3gj0_A | 221 | GTP-binding nuclear protein RAN; G protein, GDP, a | 100.0 | |
| 1z0f_A | 179 | RAB14, member RAS oncogene family; RAB GTPase, ves | 100.0 | |
| 3q3j_B | 214 | RHO-related GTP-binding protein RHO6; RAS-binding | 100.0 | |
| 2a5j_A | 191 | RAS-related protein RAB-2B; GTPase, signal transdu | 100.0 | |
| 2hup_A | 201 | RAS-related protein RAB-43; G-protein, GDP, struct | 100.0 | |
| 3tkl_A | 196 | RAS-related protein RAB-1A; vesicle trafficking, p | 100.0 | |
| 1wms_A | 177 | RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p | 100.0 | |
| 3tw8_B | 181 | RAS-related protein RAB-35; longin domain, RAB GTP | 100.0 | |
| 1r2q_A | 170 | RAS-related protein RAB-5A; GTPase, GNP, atomic re | 100.0 | |
| 2gf9_A | 189 | RAS-related protein RAB-3D; G-protein, structural | 100.0 | |
| 1z2a_A | 168 | RAS-related protein RAB-23; RAB GTPase, vesicular | 100.0 | |
| 3reg_A | 194 | RHO-like small GTPase; cytoskeleton, nucleotide-bi | 100.0 | |
| 1ek0_A | 170 | Protein (GTP-binding protein YPT51); vesicular tra | 100.0 | |
| 1x3s_A | 195 | RAS-related protein RAB-18; GTPase, GNP, structura | 100.0 | |
| 2efe_B | 181 | Small GTP-binding protein-like; GEF, GTPase, VPS9, | 100.0 | |
| 3cpj_B | 223 | GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl | 100.0 | |
| 3t5g_A | 181 | GTP-binding protein RHEB; immunoglobulin-like beta | 100.0 | |
| 1z08_A | 170 | RAS-related protein RAB-21; RAB GTPase, vesicular | 100.0 | |
| 2ew1_A | 201 | RAS-related protein RAB-30; G-protein, GTP analogu | 100.0 | |
| 2g6b_A | 180 | RAS-related protein RAB-26; G-protein, GTP analogu | 100.0 | |
| 3ihw_A | 184 | Centg3; RAS, centaurin, GTPase, structural genomic | 100.0 | |
| 2hxs_A | 178 | RAB-26, RAS-related protein RAB-28; GTPase, signal | 100.0 | |
| 3c5c_A | 187 | RAS-like protein 12; GDP, GTPase, structural genom | 100.0 | |
| 2p5s_A | 199 | RAS and EF-hand domain containing; G-protein, RAB, | 100.0 | |
| 2fg5_A | 192 | RAB-22B, RAS-related protein RAB-31; G-protein, GT | 100.0 | |
| 1g16_A | 170 | RAS-related protein SEC4; G protein RAB, signaling | 100.0 | |
| 2fu5_C | 183 | RAS-related protein RAB-8A; MSS4:RAB8 protein comp | 100.0 | |
| 2fn4_A | 181 | P23, RAS-related protein R-RAS; GDP/GTP binding, G | 100.0 | |
| 2bme_A | 186 | RAB4A, RAS-related protein RAB4A; GTP-binding prot | 100.0 | |
| 1z0j_A | 170 | RAB-22, RAS-related protein RAB-22A; RAB GTPase, R | 100.0 | |
| 2atx_A | 194 | Small GTP binding protein TC10; GTPase, P-loop, al | 100.0 | |
| 2il1_A | 192 | RAB12; G-protein, GDP, GTPase, predicted, structur | 100.0 | |
| 2oil_A | 193 | CATX-8, RAS-related protein RAB-25; G-protein, GDP | 100.0 | |
| 1m7b_A | 184 | RND3/RHOE small GTP-binding protein; small GTPase, | 100.0 | |
| 2y8e_A | 179 | RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti | 100.0 | |
| 2q3h_A | 201 | RAS homolog gene family, member U; GTPase, structu | 100.0 | |
| 3cbq_A | 195 | GTP-binding protein REM 2; FLJ38964A, structural g | 100.0 | |
| 1u8z_A | 168 | RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH | 100.0 | |
| 1c1y_A | 167 | RAS-related protein RAP-1A; GTP-binding proteins, | 100.0 | |
| 2bcg_Y | 206 | Protein YP2, GTP-binding protein YPT1; RABGTPase, | 100.0 | |
| 3oes_A | 201 | GTPase rhebl1; small GTPase, structural genomics, | 100.0 | |
| 1z06_A | 189 | RAS-related protein RAB-33B; RAB GTPase, RAB33B GT | 100.0 | |
| 2j0v_A | 212 | RAC-like GTP-binding protein ARAC7; nucleotide-bin | 100.0 | |
| 2o52_A | 200 | RAS-related protein RAB-4B; G-protein, GDP, struct | 100.0 | |
| 1zbd_A | 203 | Rabphilin-3A; G protein, effector, RABCDR, synapti | 100.0 | |
| 1mh1_A | 186 | RAC1; GTP-binding, GTPase, small G-protein, RHO fa | 100.0 | |
| 2j1l_A | 214 | RHO-related GTP-binding protein RHOD; GTPase, memb | 100.0 | |
| 3q85_A | 169 | GTP-binding protein REM 2; G-domain, CAV2 beta, si | 100.0 | |
| 2gco_A | 201 | H9, RHO-related GTP-binding protein RHOC; GTPase,s | 100.0 | |
| 3bc1_A | 195 | RAS-related protein RAB-27A; RAB27, GTPase, RAB, s | 100.0 | |
| 1gwn_A | 205 | RHO-related GTP-binding protein RHOE; GTPase, inac | 100.0 | |
| 3t1o_A | 198 | Gliding protein MGLA; G domain containing protein, | 100.0 | |
| 1vg8_A | 207 | RAS-related protein RAB-7; GTP-binding protein, pr | 100.0 | |
| 2a9k_A | 187 | RAS-related protein RAL-A; bacterial ADP-ribosyltr | 100.0 | |
| 3dz8_A | 191 | RAS-related protein RAB-3B; GDP, GTPase, structura | 100.0 | |
| 2bov_A | 206 | RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, | 100.0 | |
| 4bas_A | 199 | ADP-ribosylation factor, putative (small GTPase, p | 100.0 | |
| 3cph_A | 213 | RAS-related protein SEC4; RAB GTPase, prenylation, | 100.0 | |
| 1ky3_A | 182 | GTP-binding protein YPT7P; vesicular traffic, GTP | 100.0 | |
| 2fv8_A | 207 | H6, RHO-related GTP-binding protein RHOB; GDP/GTP | 100.0 | |
| 3clv_A | 208 | RAB5 protein, putative; malaria, GTPase, structura | 100.0 | |
| 4dsu_A | 189 | GTPase KRAS, isoform 2B; small G-protein, signalin | 100.0 | |
| 1kao_A | 167 | RAP2A; GTP-binding protein, small G protein, GDP, | 100.0 | |
| 3q72_A | 166 | GTP-binding protein RAD; G-domain, CAV2 beta, sign | 100.0 | |
| 2nzj_A | 175 | GTP-binding protein REM 1; GDP/GTP binding, GTP hy | 100.0 | |
| 2ce2_X | 166 | GTPase HRAS; signaling protein, guanine nucleotide | 100.0 | |
| 3bwd_D | 182 | RAC-like GTP-binding protein ARAC6; G domain, cyto | 100.0 | |
| 2iwr_A | 178 | Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi | 100.0 | |
| 2f7s_A | 217 | C25KG, RAS-related protein RAB-27B; G-protein, str | 100.0 | |
| 2atv_A | 196 | RERG, RAS-like estrogen-regulated growth inhibitor | 100.0 | |
| 4djt_A | 218 | GTP-binding nuclear protein GSP1; structural genom | 100.0 | |
| 3con_A | 190 | GTPase NRAS; structural genomics consortium, SGC, | 100.0 | |
| 3l0i_B | 199 | RAS-related protein RAB-1A; GEF-GDF-RAB complex, G | 100.0 | |
| 2yc2_C | 208 | IFT27, small RAB-related GTPase; transport protein | 100.0 | |
| 4gzl_A | 204 | RAS-related C3 botulinum toxin substrate 1; rossma | 100.0 | |
| 1zd9_A | 188 | ADP-ribosylation factor-like 10B; transport protei | 100.0 | |
| 2h57_A | 190 | ADP-ribosylation factor-like protein 6; GTP, GTPas | 100.0 | |
| 2erx_A | 172 | GTP-binding protein DI-RAS2; GTP hydrolysis, trans | 100.0 | |
| 2gf0_A | 199 | GTP-binding protein DI-RAS1; GDP/GTP binding, GTP | 100.0 | |
| 1ksh_A | 186 | ARF-like protein 2; small GTPase, small GTP-bindin | 100.0 | |
| 2g3y_A | 211 | GTP-binding protein GEM; small GTPase, GDP, inacti | 100.0 | |
| 1zj6_A | 187 | ADP-ribosylation factor-like protein 5; ARL, GTP-b | 100.0 | |
| 2h17_A | 181 | ADP-ribosylation factor-like protein 5A; GDP, GTPa | 100.0 | |
| 1f6b_A | 198 | SAR1; gtpases, N-terminal helix, Mg-containing com | 100.0 | |
| 1upt_A | 171 | ARL1, ADP-ribosylation factor-like protein 1; hydr | 100.0 | |
| 1m2o_B | 190 | GTP-binding protein SAR1, GTP binding protein; zin | 100.0 | |
| 2b6h_A | 192 | ADP-ribosylation factor 5; membrane trafficking, G | 100.0 | |
| 1fzq_A | 181 | ADP-ribosylation factor-like protein 3; protein-GD | 100.0 | |
| 1r8s_A | 164 | ADP-ribosylation factor 1; protein transport/excha | 100.0 | |
| 1moz_A | 183 | ARL1, ADP-ribosylation factor-like protein 1; GTP- | 100.0 | |
| 2cjw_A | 192 | GTP-binding protein GEM; nucleotide-binding, small | 100.0 | |
| 2x77_A | 189 | ADP-ribosylation factor; GTP-binding protein, smal | 100.0 | |
| 2zej_A | 184 | Dardarin, leucine-rich repeat kinase 2; parkinson' | 100.0 | |
| 3llu_A | 196 | RAS-related GTP-binding protein C; structural geno | 100.0 | |
| 2wkq_A | 332 | NPH1-1, RAS-related C3 botulinum toxin substrate 1 | 100.0 | |
| 3o47_A | 329 | ADP-ribosylation factor GTPase-activating protein | 100.0 | |
| 2f9l_A | 199 | RAB11B, member RAS oncogene family; RAB11B GTPase, | 100.0 | |
| 3th5_A | 204 | RAS-related C3 botulinum toxin substrate 1; rossma | 100.0 | |
| 3c5h_A | 255 | Glucocorticoid receptor DNA-binding factor 1; RAS, | 100.0 | |
| 1oix_A | 191 | RAS-related protein RAB-11A; small G protein, intr | 99.98 | |
| 2wji_A | 165 | Ferrous iron transport protein B homolog; membrane | 99.98 | |
| 2fh5_B | 214 | SR-beta, signal recognition particle receptor beta | 99.97 | |
| 3lvq_E | 497 | ARF-GAP with SH3 domain, ANK repeat and PH domain | 99.97 | |
| 2lkc_A | 178 | Translation initiation factor IF-2; NMR {Geobacill | 99.97 | |
| 2qu8_A | 228 | Putative nucleolar GTP-binding protein 1; GTPase, | 99.97 | |
| 3r7w_B | 331 | Gtpase2, GTP-binding protein GTR2; RAG gtpases, GT | 99.97 | |
| 2wjg_A | 188 | FEOB, ferrous iron transport protein B homolog; me | 99.97 | |
| 3r7w_A | 307 | Gtpase1, GTP-binding protein GTR1; RAG gtpases, GT | 99.97 | |
| 1svi_A | 195 | GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro | 99.97 | |
| 3iev_A | 308 | GTP-binding protein ERA; ERA, GTPase, KH domain, a | 99.96 | |
| 2dyk_A | 161 | GTP-binding protein; GTPase, ribosome-binding prot | 99.96 | |
| 3a1s_A | 258 | Iron(II) transport protein B; FEOB, iron transport | 99.96 | |
| 3dpu_A | 535 | RAB family protein; roccor, G-domain, COR, GTP-bin | 99.96 | |
| 2cxx_A | 190 | Probable GTP-binding protein ENGB; structural geno | 99.96 | |
| 3pqc_A | 195 | Probable GTP-binding protein ENGB; rossmann fold, | 99.96 | |
| 2gj8_A | 172 | MNME, tRNA modification GTPase TRME; G-domain dime | 99.96 | |
| 3b1v_A | 272 | Ferrous iron uptake transporter protein B; G prote | 99.96 | |
| 4dhe_A | 223 | Probable GTP-binding protein ENGB; melioidosis, RA | 99.95 | |
| 3iby_A | 256 | Ferrous iron transport protein B; G protein, G dom | 99.95 | |
| 3k53_A | 271 | Ferrous iron transport protein B; GTPase fold, hel | 99.95 | |
| 3i8s_A | 274 | Ferrous iron transport protein B; GTPase, GPCR, ir | 99.95 | |
| 1wf3_A | 301 | GTP-binding protein; GTPase, riken structural geno | 99.95 | |
| 3gee_A | 476 | MNME, tRNA modification GTPase MNME; G protein, cy | 99.94 | |
| 3qq5_A | 423 | Small GTP-binding protein; hydrogenase, H-cluster, | 99.94 | |
| 2e87_A | 357 | Hypothetical protein PH1320; GTP-binding, GTPase, | 99.94 | |
| 1nrj_B | 218 | SR-beta, signal recognition particle receptor beta | 99.94 | |
| 3sjy_A | 403 | Translation initiation factor 2 subunit gamma; zin | 99.93 | |
| 2hjg_A | 436 | GTP-binding protein ENGA; GTPase ENGA KH-domain, h | 99.93 | |
| 1mky_A | 439 | Probable GTP-binding protein ENGA; GTPase, DER, KH | 99.93 | |
| 1cip_A | 353 | Protein (guanine nucleotide-binding protein alpha- | 99.93 | |
| 3cb4_D | 599 | GTP-binding protein LEPA; GTPase, OB-fold, membran | 99.93 | |
| 4dcu_A | 456 | GTP-binding protein ENGA; GTPase, GDP, protein bin | 99.93 | |
| 2hjg_A | 436 | GTP-binding protein ENGA; GTPase ENGA KH-domain, h | 99.93 | |
| 1lnz_A | 342 | SPO0B-associated GTP-binding protein; GTPase, OBG, | 99.93 | |
| 3ohm_A | 327 | Guanine nucleotide-binding protein G(Q) subunit A; | 99.93 | |
| 1xzp_A | 482 | Probable tRNA modification GTPase TRME; GTP-bindin | 99.92 | |
| 2xtp_A | 260 | GTPase IMAP family member 2; immune system, G prot | 99.92 | |
| 2ywe_A | 600 | GTP-binding protein LEPA; G domain, beta-barrel, f | 99.92 | |
| 3izy_P | 537 | Translation initiation factor IF-2, mitochondrial; | 99.92 | |
| 1s0u_A | 408 | EIF-2-gamma, translation initiation factor 2 gamma | 99.92 | |
| 2xtz_A | 354 | Guanine nucleotide-binding protein alpha-1 subuni; | 99.92 | |
| 1ega_A | 301 | Protein (GTP-binding protein ERA); GTPase, RNA-bin | 99.92 | |
| 1wb1_A | 482 | Translation elongation factor SELB; selenocysteine | 99.92 | |
| 3geh_A | 462 | MNME, tRNA modification GTPase MNME; G protein, U3 | 99.92 | |
| 3lxx_A | 239 | GTPase IMAP family member 4; structural genomics c | 99.92 | |
| 3tr5_A | 528 | RF-3, peptide chain release factor 3; protein synt | 99.92 | |
| 3lxw_A | 247 | GTPase IMAP family member 1; immunity, structural | 99.91 | |
| 3j2k_7 | 439 | ERF3, eukaryotic polypeptide chain release factor | 99.91 | |
| 1d2e_A | 397 | Elongation factor TU (EF-TU); G-protein, beta-barr | 99.91 | |
| 1kk1_A | 410 | EIF2gamma; initiation of translation; HET: GNP; 1. | 99.91 | |
| 3p26_A | 483 | Elongation factor 1 alpha-like protein; GTP/GDP bi | 99.91 | |
| 1zcb_A | 362 | G alpha I/13; GTP-binding, lipoprotein, membrane, | 99.91 | |
| 4fid_A | 340 | G protein alpha subunit; RAS-like domain, all-heli | 99.91 | |
| 4dcu_A | 456 | GTP-binding protein ENGA; GTPase, GDP, protein bin | 99.9 | |
| 2c78_A | 405 | Elongation factor TU-A; hydrolase, GTPase, transla | 99.9 | |
| 3t5d_A | 274 | Septin-7; GTP-binding protein, cytoskeleton, signa | 99.9 | |
| 1jny_A | 435 | EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF- | 99.9 | |
| 2ged_A | 193 | SR-beta, signal recognition particle receptor beta | 99.9 | |
| 1g7s_A | 594 | Translation initiation factor IF2/EIF5B; translati | 99.9 | |
| 1zo1_I | 501 | IF2, translation initiation factor 2; E. coli, rib | 99.9 | |
| 1mky_A | 439 | Probable GTP-binding protein ENGA; GTPase, DER, KH | 99.9 | |
| 1zun_B | 434 | Sulfate adenylate transferase, subunit 1/adenylyls | 99.9 | |
| 2elf_A | 370 | Protein translation elongation factor 1A; tRNA, py | 99.9 | |
| 2qtf_A | 364 | Protein HFLX, GTP-binding protein; beta-alpha-barr | 99.9 | |
| 2qag_A | 361 | Septin-2, protein NEDD5; cell cycle, cell division | 99.89 | |
| 1r5b_A | 467 | Eukaryotic peptide chain release factor GTP-bindi | 99.89 | |
| 3avx_A | 1289 | Elongation factor TS, elongation factor TU, linke | 99.89 | |
| 3izq_1 | 611 | HBS1P, elongation factor 1 alpha-like protein; NO- | 99.88 | |
| 1f60_A | 458 | Elongation factor EEF1A; protein-protein complex, | 99.88 | |
| 1pui_A | 210 | ENGB, probable GTP-binding protein ENGB; structura | 99.88 | |
| 2aka_B | 299 | Dynamin-1; fusion protein, GTPase domain, myosin, | 99.87 | |
| 2h5e_A | 529 | Peptide chain release factor RF-3; beta barrel, tr | 99.87 | |
| 3mca_A | 592 | HBS1, elongation factor 1 alpha-like protein; prot | 99.87 | |
| 2dy1_A | 665 | Elongation factor G; translocation, GTP complex, s | 99.86 | |
| 1dar_A | 691 | EF-G, elongation factor G; ribosomal translocase, | 99.86 | |
| 1u0l_A | 301 | Probable GTPase ENGC; permutation, OB-fold, zinc-f | 99.86 | |
| 1udx_A | 416 | The GTP-binding protein OBG; TGS domain, riken str | 99.84 | |
| 2qnr_A | 301 | Septin-2, protein NEDD5; structural genomics conso | 99.84 | |
| 3def_A | 262 | T7I23.11 protein; chloroplast, TOC33, GTPase, hydr | 99.84 | |
| 2rdo_7 | 704 | EF-G, elongation factor G; elongation factor G, EF | 99.83 | |
| 1azs_C | 402 | GS-alpha; complex (lyase/hydrolase), hydrolase, si | 99.83 | |
| 2j69_A | 695 | Bacterial dynamin-like protein; FZO, FZL, GTPase, | 99.83 | |
| 2xex_A | 693 | Elongation factor G; GTPase, translation, biosynth | 99.83 | |
| 1h65_A | 270 | Chloroplast outer envelope protein OEP34; GTPase, | 99.83 | |
| 1jwy_B | 315 | Dynamin A GTPase domain; dynamin, GTPase, GDP, myo | 99.82 | |
| 1wxq_A | 397 | GTP-binding protein; structural genomics, riken st | 99.81 | |
| 2qag_C | 418 | Septin-7; cell cycle, cell division, GTP-binding, | 99.81 | |
| 3vqt_A | 548 | RF-3, peptide chain release factor 3; translation, | 99.79 | |
| 3t34_A | 360 | Dynamin-related protein 1A, linker, dynamin-relat | 99.78 | |
| 2x2e_A | 353 | Dynamin-1; nitration, hydrolase, membrane fission, | 99.78 | |
| 2wsm_A | 221 | Hydrogenase expression/formation protein (HYPB); m | 99.77 | |
| 3p32_A | 355 | Probable GTPase RV1496/MT1543; structural genomics | 99.76 | |
| 2hf9_A | 226 | Probable hydrogenase nickel incorporation protein | 99.75 | |
| 1n0u_A | 842 | EF-2, elongation factor 2; G-protein, CIS-proline, | 99.72 | |
| 1jal_A | 363 | YCHF protein; nucleotide-binding fold, structural | 99.72 | |
| 3j25_A | 638 | Tetracycline resistance protein TETM; antibiotic r | 99.7 | |
| 2www_A | 349 | Methylmalonic aciduria type A protein, mitochondri | 99.69 | |
| 2qpt_A | 550 | EH domain-containing protein-2; protein-nucleotide | 99.69 | |
| 1yrb_A | 262 | ATP(GTP)binding protein; GTPase, P-loop, rossman f | 99.68 | |
| 2p67_A | 341 | LAO/AO transport system kinase; ARGK, structural G | 99.66 | |
| 4fn5_A | 709 | EF-G 1, elongation factor G 1; translation, transl | 99.66 | |
| 2dby_A | 368 | GTP-binding protein; GDP, structural genomics, NPP | 99.64 | |
| 3l82_B | 227 | F-box only protein 4; TRFH domain, helix, GTPase d | 99.63 | |
| 2yv5_A | 302 | YJEQ protein; hydrolase, GTPase, permutation, stru | 99.6 | |
| 3zvr_A | 772 | Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mito | 99.57 | |
| 3l2o_B | 312 | F-box only protein 4; small G protein fold, UBL co | 99.55 | |
| 4a9a_A | 376 | Ribosome-interacting GTPase 1; DRG-DFRP complex, r | 99.53 | |
| 2qm8_A | 337 | GTPase/ATPase; G protein, G3E, metallochaperone, c | 99.45 | |
| 2ohf_A | 396 | Protein OLA1, GTP-binding protein 9; ATPase, GTPas | 99.42 | |
| 1ni3_A | 392 | YCHF GTPase, YCHF GTP-binding protein; structural | 99.35 | |
| 3h2y_A | 368 | GTPase family protein; GTP-binding protein YQEH, p | 99.25 | |
| 1puj_A | 282 | YLQF, conserved hypothetical protein YLQF; structu | 99.19 | |
| 3ec1_A | 369 | YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase | 99.16 | |
| 3ec1_A | 369 | YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase | 99.14 | |
| 3h2y_A | 368 | GTPase family protein; GTP-binding protein YQEH, p | 99.14 | |
| 2j37_W | 504 | Signal recognition particle 54 kDa protein (SRP54) | 99.1 | |
| 3sop_A | 270 | Neuronal-specific septin-3; hydrolase; HET: GDP; 2 | 99.05 | |
| 2qag_B | 427 | Septin-6, protein NEDD5; cell cycle, cell division | 99.03 | |
| 1tq4_A | 413 | IIGP1, interferon-inducible GTPase; interferon gam | 99.01 | |
| 1puj_A | 282 | YLQF, conserved hypothetical protein YLQF; structu | 98.82 | |
| 3cnl_A | 262 | YLQF, putative uncharacterized protein; circular p | 98.81 | |
| 3cnl_A | 262 | YLQF, putative uncharacterized protein; circular p | 98.78 | |
| 3dm5_A | 443 | SRP54, signal recognition 54 kDa protein; protein- | 98.76 | |
| 1t9h_A | 307 | YLOQ, probable GTPase ENGC; N-terminal beta-barrel | 98.75 | |
| 2v3c_C | 432 | SRP54, signal recognition 54 kDa protein; nucleoti | 98.67 | |
| 2rcn_A | 358 | Probable GTPase ENGC; YJEQ, circularly permuted, G | 98.52 | |
| 3kl4_A | 433 | SRP54, signal recognition 54 kDa protein; signal r | 98.51 | |
| 1j8m_F | 297 | SRP54, signal recognition 54 kDa protein; signalin | 98.46 | |
| 1f5n_A | 592 | Interferon-induced guanylate-binding protein 1; GB | 98.41 | |
| 1bif_A | 469 | 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; | 98.39 | |
| 3e70_C | 328 | DPA, signal recognition particle receptor; FTSY, S | 98.31 | |
| 3szr_A | 608 | Interferon-induced GTP-binding protein MX1; interf | 98.26 | |
| 2xxa_A | 433 | Signal recognition particle protein; protein trans | 97.93 | |
| 4dzz_A | 206 | Plasmid partitioning protein PARF; deviant walker | 97.84 | |
| 3q5d_A | 447 | Atlastin-1; G protein, GTPase, GDP/GTP binding, hy | 97.81 | |
| 1ye8_A | 178 | Protein THEP1, hypothetical UPF0334 kinase-like pr | 97.75 | |
| 1ex7_A | 186 | Guanylate kinase; substrate-induced FIT, domain mo | 97.73 | |
| 2ffh_A | 425 | Protein (FFH); SRP54, signal recognition particle, | 97.73 | |
| 1kgd_A | 180 | CASK, peripheral plasma membrane CASK; maguk, guan | 97.7 | |
| 3cwq_A | 209 | Para family chromosome partitioning protein; alpha | 97.7 | |
| 4gp7_A | 171 | Metallophosphoesterase; polynucleotide kinase phos | 97.66 | |
| 1lvg_A | 198 | Guanylate kinase, GMP kinase; transferase; HET: AD | 97.65 | |
| 1zp6_A | 191 | Hypothetical protein ATU3015; alpha-beta protein., | 97.56 | |
| 3a00_A | 186 | Guanylate kinase, GMP kinase; domain movement, dim | 97.55 | |
| 1t9h_A | 307 | YLOQ, probable GTPase ENGC; N-terminal beta-barrel | 97.54 | |
| 3tr0_A | 205 | Guanylate kinase, GMP kinase; purines, pyrimidines | 97.54 | |
| 1znw_A | 207 | Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans | 97.5 | |
| 1s96_A | 219 | Guanylate kinase, GMP kinase; E.coli, dimer, SAD, | 97.5 | |
| 3c8u_A | 208 | Fructokinase; YP_612366.1, putative fructose trans | 97.5 | |
| 3ney_A | 197 | 55 kDa erythrocyte membrane protein; structural ge | 97.5 | |
| 1z6g_A | 218 | Guanylate kinase; structural genomics, SGC, struct | 97.48 | |
| 2cdn_A | 201 | Adenylate kinase; phosphoryl transfer, associative | 97.48 | |
| 3tau_A | 208 | Guanylate kinase, GMP kinase; structural genomics, | 97.45 | |
| 1ly1_A | 181 | Polynucleotide kinase; PNK, phosphatase, transfera | 97.43 | |
| 2qor_A | 204 | Guanylate kinase; phosphotransferase, purine metab | 97.43 | |
| 2bbw_A | 246 | Adenylate kinase 4, AK4; nucleotide kinase, nucleo | 97.42 | |
| 1kag_A | 173 | SKI, shikimate kinase I; transferase, structural g | 97.4 | |
| 3tif_A | 235 | Uncharacterized ABC transporter ATP-binding prote; | 97.4 | |
| 1htw_A | 158 | HI0065; nucleotide-binding fold, structural genomi | 97.39 | |
| 3lw7_A | 179 | Adenylate kinase related protein (ADKA-like); AMP, | 97.39 | |
| 1knq_A | 175 | Gluconate kinase; ALFA/beta structure, transferase | 97.38 | |
| 3kb2_A | 173 | SPBC2 prophage-derived uncharacterized protein YOR | 97.38 | |
| 1qhx_A | 178 | CPT, protein (chloramphenicol phosphotransferase); | 97.37 | |
| 2bdt_A | 189 | BH3686; alpha-beta protein, structural genomics, P | 97.37 | |
| 3t61_A | 202 | Gluconokinase; PSI-biology, structural genomics, p | 97.37 | |
| 2j41_A | 207 | Guanylate kinase; GMP, GMK, transferase, ATP-bindi | 97.35 | |
| 2pcj_A | 224 | ABC transporter, lipoprotein-releasing system ATP- | 97.34 | |
| 3asz_A | 211 | Uridine kinase; cytidine phosphorylation, transfer | 97.34 | |
| 3fb4_A | 216 | Adenylate kinase; psychrophIle, phosphotransferase | 97.34 | |
| 2wwf_A | 212 | Thymidilate kinase, putative; transferase, malaria | 97.34 | |
| 4eun_A | 200 | Thermoresistant glucokinase; putative sugar kinase | 97.34 | |
| 1ukz_A | 203 | Uridylate kinase; transferase; HET: ADP AMP; 1.90A | 97.33 | |
| 1kht_A | 192 | Adenylate kinase; phosphotransferase, signaling pr | 97.33 | |
| 3dl0_A | 216 | Adenylate kinase; phosphotransferase, zinc coordin | 97.32 | |
| 1tev_A | 196 | UMP-CMP kinase; ploop, NMP binding region, LID reg | 97.32 | |
| 3vaa_A | 199 | Shikimate kinase, SK; structural genomics, center | 97.32 | |
| 2i3b_A | 189 | HCR-ntpase, human cancer-related ntpase; AAA, ross | 97.31 | |
| 2onk_A | 240 | Molybdate/tungstate ABC transporter, ATP-binding p | 97.31 | |
| 1y63_A | 184 | LMAJ004144AAA protein; structural genomics, protei | 97.3 | |
| 3trf_A | 185 | Shikimate kinase, SK; amino acid biosynthesis, tra | 97.3 | |
| 2rhm_A | 193 | Putative kinase; P-loop containing nucleoside trip | 97.3 | |
| 3cm0_A | 186 | Adenylate kinase; ATP-binding, cytoplasm, nucleoti | 97.3 | |
| 1uf9_A | 203 | TT1252 protein; P-loop, nucleotide binding domain, | 97.29 | |
| 3gfo_A | 275 | Cobalt import ATP-binding protein CBIO 1; structur | 97.29 | |
| 1b0u_A | 262 | Histidine permease; ABC transporter, transport pro | 97.28 | |
| 1aky_A | 220 | Adenylate kinase; ATP:AMP phosphotransferase, myok | 97.28 | |
| 3tlx_A | 243 | Adenylate kinase 2; structural genomics, structura | 97.28 | |
| 1sgw_A | 214 | Putative ABC transporter; structural genomics, P p | 97.28 | |
| 2rcn_A | 358 | Probable GTPase ENGC; YJEQ, circularly permuted, G | 97.28 | |
| 1np6_A | 174 | Molybdopterin-guanine dinucleotide biosynthesis pr | 97.27 | |
| 4g1u_C | 266 | Hemin import ATP-binding protein HMUV; membrane tr | 97.27 | |
| 2if2_A | 204 | Dephospho-COA kinase; alpha-beta protein, structur | 97.27 | |
| 2cbz_A | 237 | Multidrug resistance-associated protein 1; ABC pro | 97.26 | |
| 2plr_A | 213 | DTMP kinase, probable thymidylate kinase; TMP-bind | 97.26 | |
| 2eyu_A | 261 | Twitching motility protein PILT; pilus retraction | 97.26 | |
| 3sr0_A | 206 | Adenylate kinase; phosphoryl transfer analogue, AL | 97.26 | |
| 1nks_A | 194 | Adenylate kinase; thermophilic, transferase; HET: | 97.26 | |
| 1g6h_A | 257 | High-affinity branched-chain amino acid transport | 97.26 | |
| 2yvu_A | 186 | Probable adenylyl-sulfate kinase; transferase, str | 97.25 | |
| 2ff7_A | 247 | Alpha-hemolysin translocation ATP-binding protein | 97.24 | |
| 1mv5_A | 243 | LMRA, multidrug resistance ABC transporter ATP-bin | 97.24 | |
| 1gvn_B | 287 | Zeta; postsegregational killing system, plasmid; 1 | 97.24 | |
| 2pze_A | 229 | Cystic fibrosis transmembrane conductance regulat; | 97.24 | |
| 2ehv_A | 251 | Hypothetical protein PH0186; KAIC, RECA ATPase, un | 97.24 | |
| 2jaq_A | 205 | Deoxyguanosine kinase; transferase, deoxyribonucle | 97.24 | |
| 3uie_A | 200 | Adenylyl-sulfate kinase 1, chloroplastic; rossmann | 97.24 | |
| 2v9p_A | 305 | Replication protein E1; AAA+ molecular motor, DNA | 97.23 | |
| 3ec2_A | 180 | DNA replication protein DNAC; helicase loader, rep | 97.23 | |
| 2olj_A | 263 | Amino acid ABC transporter; ABC domain, ATPase, hy | 97.23 | |
| 1cke_A | 227 | CK, MSSA, protein (cytidine monophosphate kinase); | 97.23 | |
| 3iij_A | 180 | Coilin-interacting nuclear ATPase protein; alpha a | 97.22 | |
| 1e4v_A | 214 | Adenylate kinase; transferase(phosphotransferase); | 97.22 | |
| 1ji0_A | 240 | ABC transporter; ATP binding protein, structural g | 97.22 | |
| 3b85_A | 208 | Phosphate starvation-inducible protein; PHOH2, ATP | 97.21 | |
| 2qi9_C | 249 | Vitamin B12 import ATP-binding protein BTUD; inner | 97.21 | |
| 1vpl_A | 256 | ABC transporter, ATP-binding protein; TM0544, stru | 97.21 | |
| 1jjv_A | 206 | Dephospho-COA kinase; P-loop nucleotide-binding fo | 97.2 | |
| 2ghi_A | 260 | Transport protein; multidrug resistance protein, M | 97.19 | |
| 2d2e_A | 250 | SUFC protein; ABC-ATPase, SUF protein, 310-helix, | 97.19 | |
| 2zu0_C | 267 | Probable ATP-dependent transporter SUFC; iron-sulf | 97.18 | |
| 4a74_A | 231 | DNA repair and recombination protein RADA; hydrola | 97.18 | |
| 1via_A | 175 | Shikimate kinase; structural genomics, transferase | 97.18 | |
| 2ixe_A | 271 | Antigen peptide transporter 1; ABC ATPase, hydrola | 97.18 | |
| 2ihy_A | 279 | ABC transporter, ATP-binding protein; ATPase, ABC | 97.17 | |
| 1odf_A | 290 | YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser | 97.17 | |
| 2qt1_A | 207 | Nicotinamide riboside kinase 1; non-protein kinase | 97.17 | |
| 2nq2_C | 253 | Hypothetical ABC transporter ATP-binding protein H | 97.16 | |
| 1zd8_A | 227 | GTP:AMP phosphotransferase mitochondrial; ATP:AMP | 97.16 | |
| 2f1r_A | 171 | Molybdopterin-guanine dinucleotide biosynthesis pr | 97.16 | |
| 2yv5_A | 302 | YJEQ protein; hydrolase, GTPase, permutation, stru | 97.15 | |
| 3lnc_A | 231 | Guanylate kinase, GMP kinase; ALS collaborative cr | 97.15 | |
| 2yz2_A | 266 | Putative ABC transporter ATP-binding protein TM_0; | 97.14 | |
| 1zak_A | 222 | Adenylate kinase; ATP:AMP-phosphotransferase, tran | 97.14 | |
| 2c95_A | 196 | Adenylate kinase 1; transferase, AP4A, nucleotide | 97.14 | |
| 1u0l_A | 301 | Probable GTPase ENGC; permutation, OB-fold, zinc-f | 97.14 | |
| 3aez_A | 312 | Pantothenate kinase; transferase, homodimer, COA b | 97.13 | |
| 2vli_A | 183 | Antibiotic resistance protein; transferase, tunica | 97.12 | |
| 2v54_A | 204 | DTMP kinase, thymidylate kinase; nucleotide biosyn | 97.12 | |
| 2pt5_A | 168 | Shikimate kinase, SK; aromatic amino acid biosynth | 97.12 | |
| 1lw7_A | 365 | Transcriptional regulator NADR; NMN, NMN adenylyl | 97.11 | |
| 2pjz_A | 263 | Hypothetical protein ST1066; ATP binding protein, | 97.1 | |
| 2f6r_A | 281 | COA synthase, bifunctional coenzyme A synthase; 18 | 97.1 | |
| 2jeo_A | 245 | Uridine-cytidine kinase 1; UCK, transferase, ATP-b | 97.1 | |
| 4e22_A | 252 | Cytidylate kinase; P-loop, CMP/ATP binding, transf | 97.09 | |
| 2p5t_B | 253 | PEZT; postsegregational killing system, phosphoryl | 97.08 | |
| 1xjc_A | 169 | MOBB protein homolog; structural genomics, midwest | 97.08 | |
| 2xb4_A | 223 | Adenylate kinase; ATP-binding, nucleotide-binding, | 97.07 | |
| 1nn5_A | 215 | Similar to deoxythymidylate kinase (thymidylate K; | 97.07 | |
| 1jbk_A | 195 | CLPB protein; beta barrel, chaperone; 1.80A {Esche | 97.07 | |
| 3nh6_A | 306 | ATP-binding cassette SUB-family B member 6, mitoc; | 97.06 | |
| 1ak2_A | 233 | Adenylate kinase isoenzyme-2; nucleoside monophosp | 97.06 | |
| 3tqc_A | 321 | Pantothenate kinase; biosynthesis of cofactors, pr | 97.06 | |
| 1qf9_A | 194 | UMP/CMP kinase, protein (uridylmonophosphate/cytid | 97.05 | |
| 2ze6_A | 253 | Isopentenyl transferase; crown GALL tumor, cytokin | 97.04 | |
| 3fvq_A | 359 | Fe(3+) IONS import ATP-binding protein FBPC; nucle | 97.04 | |
| 2kjq_A | 149 | DNAA-related protein; solution structure, NESG, st | 97.02 | |
| 2x8a_A | 274 | Nuclear valosin-containing protein-like; nuclear p | 97.02 | |
| 2bbs_A | 290 | Cystic fibrosis transmembrane conductance regulato | 97.02 | |
| 3jvv_A | 356 | Twitching mobility protein; hexameric P-loop ATPas | 97.02 | |
| 1uj2_A | 252 | Uridine-cytidine kinase 2; alpha/beta mononucleoti | 97.02 | |
| 1rz3_A | 201 | Hypothetical protein rbstp0775; MCSG, structural g | 97.01 | |
| 3tui_C | 366 | Methionine import ATP-binding protein METN; ABC-tr | 97.01 | |
| 3r20_A | 233 | Cytidylate kinase; structural genomics, seattle st | 97.01 | |
| 3be4_A | 217 | Adenylate kinase; malaria, cryptosporidium parvum | 97.0 | |
| 1rj9_A | 304 | FTSY, signal recognition protein; SRP-GTPase domai | 97.0 | |
| 2bwj_A | 199 | Adenylate kinase 5; phosphoryl transfer reaction, | 96.99 | |
| 4ido_A | 457 | Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HE | 96.99 | |
| 1z47_A | 355 | CYSA, putative ABC-transporter ATP-binding protein | 96.97 | |
| 1ixz_A | 254 | ATP-dependent metalloprotease FTSH; AAA domain fol | 96.97 | |
| 3b9q_A | 302 | Chloroplast SRP receptor homolog, alpha subunit CP | 96.97 | |
| 2pbr_A | 195 | DTMP kinase, thymidylate kinase; transferase, nucl | 96.97 | |
| 3rlf_A | 381 | Maltose/maltodextrin import ATP-binding protein M; | 96.96 | |
| 2pt7_A | 330 | CAG-ALFA; ATPase, protein-protein complex, type IV | 96.96 | |
| 2pez_A | 179 | Bifunctional 3'-phosphoadenosine 5'- phosphosulfat | 96.95 | |
| 1e6c_A | 173 | Shikimate kinase; phosphoryl transfer, ADP, shikim | 96.95 | |
| 2gza_A | 361 | Type IV secretion system protein VIRB11; ATPase, h | 96.95 | |
| 2yyz_A | 359 | Sugar ABC transporter, ATP-binding protein; sugar | 96.95 | |
| 2iyv_A | 184 | Shikimate kinase, SK; transferase, aromatic amino | 96.95 | |
| 2it1_A | 362 | 362AA long hypothetical maltose/maltodextrin trans | 96.94 | |
| 1sq5_A | 308 | Pantothenate kinase; P-loop, transferase; HET: PAU | 96.94 | |
| 1gtv_A | 214 | TMK, thymidylate kinase; transferase, transferase | 96.94 | |
| 3a4m_A | 260 | L-seryl-tRNA(SEC) kinase; P-loop motif, walker A m | 96.94 | |
| 2z0h_A | 197 | DTMP kinase, thymidylate kinase; ATP-binding, nucl | 96.94 | |
| 3umf_A | 217 | Adenylate kinase; rossmann fold, transferase; 2.05 | 96.93 | |
| 2ewv_A | 372 | Twitching motility protein PILT; pilus retraction | 96.93 | |
| 2w0m_A | 235 | SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus | 96.92 | |
| 1zuh_A | 168 | Shikimate kinase; alpha-beta protein, transferase; | 96.92 | |
| 1vht_A | 218 | Dephospho-COA kinase; structural genomics, transfe | 96.92 | |
| 1v43_A | 372 | Sugar-binding transport ATP-binding protein; ATPas | 96.91 | |
| 1g29_1 | 372 | MALK, maltose transport protein MALK; ATPase, acti | 96.91 | |
| 2p65_A | 187 | Hypothetical protein PF08_0063; CLPB, malaria, str | 96.87 | |
| 2oap_1 | 511 | GSPE-2, type II secretion system protein; hexameri | 96.85 | |
| 1p9r_A | 418 | General secretion pathway protein E; bacterial typ | 96.85 | |
| 1in4_A | 334 | RUVB, holliday junction DNA helicase RUVB; AAA+-cl | 96.85 | |
| 1iy2_A | 278 | ATP-dependent metalloprotease FTSH; AAA domain fol | 96.84 | |
| 3bos_A | 242 | Putative DNA replication factor; P-loop containing | 96.83 | |
| 3kta_A | 182 | Chromosome segregation protein SMC; structural mai | 96.83 | |
| 2vp4_A | 230 | Deoxynucleoside kinase; ATP-binding, DNA synthesis | 96.83 | |
| 1cr0_A | 296 | DNA primase/helicase; RECA-type protein fold, tran | 96.82 | |
| 3d31_A | 348 | Sulfate/molybdate ABC transporter, ATP-binding pro | 96.82 | |
| 2grj_A | 192 | Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosp | 96.82 | |
| 3nwj_A | 250 | ATSK2; P loop, shikimate, nucleoside monophosphate | 96.81 | |
| 3gd7_A | 390 | Fusion complex of cystic fibrosis transmembrane co | 96.81 | |
| 1lv7_A | 257 | FTSH; alpha/beta domain, four helix bundle, hydrol | 96.81 | |
| 2cvh_A | 220 | DNA repair and recombination protein RADB; filamen | 96.8 | |
| 2og2_A | 359 | Putative signal recognition particle receptor; nuc | 96.8 | |
| 2w58_A | 202 | DNAI, primosome component (helicase loader); ATP-b | 96.77 | |
| 1n0w_A | 243 | DNA repair protein RAD51 homolog 1; DNA repair, ho | 96.76 | |
| 1nij_A | 318 | Hypothetical protein YJIA; structural genomics, P- | 96.76 | |
| 1m7g_A | 211 | Adenylylsulfate kinase; APS kinase, transferase, s | 96.76 | |
| 2yhs_A | 503 | FTSY, cell division protein FTSY; cell cycle, prot | 96.75 | |
| 4eaq_A | 229 | DTMP kinase, thymidylate kinase; structural genomi | 96.74 | |
| 1ltq_A | 301 | Polynucleotide kinase; phosphatase, alpha/beta, P- | 96.73 | |
| 3t15_A | 293 | Ribulose bisphosphate carboxylase/oxygenase activ | 96.72 | |
| 3syl_A | 309 | Protein CBBX; photosynthesis, rubisco activase, AA | 96.71 | |
| 1oxx_K | 353 | GLCV, glucose, ABC transporter, ATP binding protei | 96.7 | |
| 3zvl_A | 416 | Bifunctional polynucleotide phosphatase/kinase; hy | 96.7 | |
| 2obl_A | 347 | ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O | 96.68 | |
| 3crm_A | 323 | TRNA delta(2)-isopentenylpyrophosphate transferase | 96.68 | |
| 2npi_A | 460 | Protein CLP1; CLP1-PCF11 complex, ATP binding, ter | 96.68 | |
| 3n70_A | 145 | Transport activator; sigma-54, ntpase, PSI, MCSG, | 96.66 | |
| 1njg_A | 250 | DNA polymerase III subunit gamma; rossman-like fol | 96.63 | |
| 4fcw_A | 311 | Chaperone protein CLPB; AAA domain; HET: ADP; 2.35 | 96.63 | |
| 1nlf_A | 279 | Regulatory protein REPA; replicative DNA helicase | 96.61 | |
| 2qz4_A | 262 | Paraplegin; AAA+, SPG7, protease, ADP, structural | 96.61 | |
| 3h4m_A | 285 | Proteasome-activating nucleotidase; ATPase, PAN, A | 96.61 | |
| 2chg_A | 226 | Replication factor C small subunit; DNA-binding pr | 96.61 | |
| 1f2t_A | 149 | RAD50 ABC-ATPase; DNA double-strand break repair, | 96.6 | |
| 1q3t_A | 236 | Cytidylate kinase; nucleotide monophosphate kinase | 96.59 | |
| 1d2n_A | 272 | N-ethylmaleimide-sensitive fusion protein; hexamer | 96.59 | |
| 1p5z_B | 263 | DCK, deoxycytidine kinase; nucleoside kinase, P-lo | 96.59 | |
| 3b9p_A | 297 | CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc | 96.58 | |
| 1tue_A | 212 | Replication protein E1; helicase, replication, E1E | 96.57 | |
| 2qmh_A | 205 | HPR kinase/phosphorylase; V267F mutation, ATP-bind | 96.57 | |
| 2dr3_A | 247 | UPF0273 protein PH0284; RECA superfamily ATPase, h | 96.56 | |
| 3gmt_A | 230 | Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucle | 96.54 | |
| 3cf0_A | 301 | Transitional endoplasmic reticulum ATPase; AAA, P9 | 96.52 | |
| 1a7j_A | 290 | Phosphoribulokinase; transferase, calvin cycle; 2. | 96.52 | |
| 2dpy_A | 438 | FLII, flagellum-specific ATP synthase; beta barrel | 96.5 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 96.49 | |
| 3co5_A | 143 | Putative two-component system transcriptional RES | 96.48 | |
| 3b60_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 96.48 | |
| 3euj_A | 483 | Chromosome partition protein MUKB, linker; MUKB, M | 96.45 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 96.44 | |
| 1azs_C | 402 | GS-alpha; complex (lyase/hydrolase), hydrolase, si | 96.43 | |
| 1l8q_A | 324 | Chromosomal replication initiator protein DNAA; AA | 96.43 | |
| 2px0_A | 296 | Flagellar biosynthesis protein FLHF; SRP GTPase, f | 96.42 | |
| 3b5x_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 96.4 | |
| 1svm_A | 377 | Large T antigen; AAA+ fold, viral protein; HET: AT | 96.39 | |
| 2h92_A | 219 | Cytidylate kinase; rossmann fold, transferase; HET | 96.37 | |
| 3ake_A | 208 | Cytidylate kinase; CMP kinase, CMP complex, open c | 96.37 | |
| 1pzn_A | 349 | RAD51, DNA repair and recombination protein RAD51, | 96.37 | |
| 2qby_A | 386 | CDC6 homolog 1, cell division control protein 6 ho | 96.37 | |
| 4b4t_M | 434 | 26S protease regulatory subunit 6A; hydrolase, AAA | 96.37 | |
| 1xwi_A | 322 | SKD1 protein; VPS4B, AAA ATPase, protein transport | 96.36 | |
| 1ofh_A | 310 | ATP-dependent HSL protease ATP-binding subunit HSL | 96.34 | |
| 3eie_A | 322 | Vacuolar protein sorting-associated protein 4; AAA | 96.34 | |
| 4a82_A | 578 | Cystic fibrosis transmembrane conductance regulat; | 96.34 | |
| 1vma_A | 306 | Cell division protein FTSY; TM0570, structural gen | 96.34 | |
| 3tqf_A | 181 | HPR(Ser) kinase; transferase, hydrolase; 2.80A {Co | 96.34 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 96.33 | |
| 2yl4_A | 595 | ATP-binding cassette SUB-family B member 10, mitoc | 96.33 | |
| 1sxj_E | 354 | Activator 1 40 kDa subunit; clamp loader, processi | 96.32 | |
| 3qf4_B | 598 | Uncharacterized ABC transporter ATP-binding prote | 96.32 | |
| 3qf7_A | 365 | RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1. | 96.32 | |
| 4b4t_K | 428 | 26S protease regulatory subunit 6B homolog; hydrol | 96.31 | |
| 1fnn_A | 389 | CDC6P, cell division control protein 6; ORC1, AAA | 96.28 | |
| 3d3q_A | 340 | TRNA delta(2)-isopentenylpyrophosphate transferase | 96.28 | |
| 4b4t_L | 437 | 26S protease subunit RPT4; hydrolase, AAA-atpases, | 96.27 | |
| 3qf4_A | 587 | ABC transporter, ATP-binding protein; multidrug tr | 96.25 | |
| 1c9k_A | 180 | COBU, adenosylcobinamide kinase; alpha/beta struct | 96.25 | |
| 1sxj_C | 340 | Activator 1 40 kDa subunit; clamp loader, processi | 96.25 | |
| 1tf7_A | 525 | KAIC; homohexamer, hexamer, circadian clock protei | 96.24 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 96.23 | |
| 3a8t_A | 339 | Adenylate isopentenyltransferase; rossmann fold pr | 96.21 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 96.21 | |
| 2axn_A | 520 | 6-phosphofructo-2-kinase/fructose-2,6- biphosphata | 96.18 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 96.17 | |
| 3hws_A | 363 | ATP-dependent CLP protease ATP-binding subunit CL; | 96.17 | |
| 2ocp_A | 241 | DGK, deoxyguanosine kinase; protein-nucleotide com | 96.15 | |
| 3uk6_A | 368 | RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding | 96.15 | |
| 3pxg_A | 468 | Negative regulator of genetic competence CLPC/MEC; | 96.15 | |
| 3foz_A | 316 | TRNA delta(2)-isopentenylpyrophosphate transferas; | 96.15 | |
| 2ga8_A | 359 | Hypothetical 39.9 kDa protein; YFR007W, YFH7, unkn | 96.14 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 96.14 | |
| 4b4t_J | 405 | 26S protease regulatory subunit 8 homolog; hydrola | 96.12 | |
| 3lda_A | 400 | DNA repair protein RAD51; DNA binding protein, ATP | 96.12 | |
| 1um8_A | 376 | ATP-dependent CLP protease ATP-binding subunit CL; | 96.12 | |
| 1sxj_D | 353 | Activator 1 41 kDa subunit; clamp loader, processi | 96.1 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 96.1 | |
| 2qgz_A | 308 | Helicase loader, putative primosome component; str | 96.1 | |
| 2qp9_X | 355 | Vacuolar protein sorting-associated protein 4; ATP | 96.09 | |
| 2qen_A | 350 | Walker-type ATPase; unknown function; HET: ADP; 2. | 96.09 | |
| 2v1u_A | 387 | Cell division control protein 6 homolog; DNA repli | 96.06 | |
| 2r62_A | 268 | Cell division protease FTSH homolog; ATPase domain | 96.05 | |
| 2fna_A | 357 | Conserved hypothetical protein; structural genomic | 96.05 | |
| 3d8b_A | 357 | Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, s | 96.05 | |
| 3exa_A | 322 | TRNA delta(2)-isopentenylpyrophosphate transferase | 96.04 |
| >4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-44 Score=242.78 Aligned_cols=173 Identities=28% Similarity=0.516 Sum_probs=138.7
Q ss_pred CCCCCCCCCCCCeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccc
Q 030504 1 MALPSQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRD 80 (176)
Q Consensus 1 ~~~~~~~~~~~~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~ 80 (176)
|+.+..-..+++.+||+|+|.+|||||||+++|..+.+...+.||.|.++.......++..+.+.+|||+|++++..++.
T Consensus 1 ms~~~~~~~P~k~~KivlvGd~~VGKTsLi~r~~~~~f~~~~~~Tig~d~~~k~~~~~~~~v~l~iwDtaGqe~~~~l~~ 80 (216)
T 4dkx_A 1 MSTGGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGLERFRSLIP 80 (216)
T ss_dssp ------------CEEEEEECSTTSSHHHHHHHHHHSCCC----------CEEEEEECSSCEEEEEEECCSCTTTCGGGHH
T ss_pred CCCCCCCCCCCCcEEEEEECcCCcCHHHHHHHHHhCCCCCCcCCccceEEEEEEEEecceEEEEEEEECCCchhhhhHHH
Confidence 55555555667889999999999999999999999999999999999999988888999999999999999999999999
Q ss_pred cccccccEEEEEEeCCChhhhhhHHHHHHHHhhhc-CCCCEEEEEeCCCCCccc--cCHHHHHHHHHcCCeEEEeccCCC
Q 030504 81 GYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNRQ--VKAKQVTFHRKKNLQYYEISAKSN 157 (176)
Q Consensus 81 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~liv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~S~~~~ 157 (176)
.+++.++++++|||++++.+|+.+..|+..+.... ++.|+++|+||+|+.... ...+...++++.++.|++|||++|
T Consensus 81 ~~~~~a~~~ilv~di~~~~Sf~~i~~~~~~i~~~~~~~~piilVgNK~Dl~~~r~V~~~e~~~~a~~~~~~~~e~SAktg 160 (216)
T 4dkx_A 81 SYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAG 160 (216)
T ss_dssp HHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEEBTTTT
T ss_pred HHhccccEEEEEeecchhHHHHHHHHHHHHHHHhcCCCCeEEEEeeccchHhcCcccHHHHhhHHHHhCCeeEEEeCCCC
Confidence 99999999999999999999999999999887654 689999999999998643 334567999999999999999999
Q ss_pred CChHHHHHHHHHHHhc
Q 030504 158 YNFEKPFLYLARKLAG 173 (176)
Q Consensus 158 ~~v~~~~~~l~~~i~~ 173 (176)
.||+++|++|++.+.+
T Consensus 161 ~nV~e~F~~i~~~i~~ 176 (216)
T 4dkx_A 161 YNVKQLFRRVAAALPG 176 (216)
T ss_dssp BSHHHHHHHHHHHC--
T ss_pred cCHHHHHHHHHHHHHh
Confidence 9999999999998764
|
| >3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-37 Score=206.01 Aligned_cols=171 Identities=30% Similarity=0.495 Sum_probs=145.8
Q ss_pred CCCCCCCCCCeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccccc
Q 030504 3 LPSQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGY 82 (176)
Q Consensus 3 ~~~~~~~~~~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~ 82 (176)
++..++...+.+||+++|.+|+|||||++++..+.+...+.++.+..+ ......++..+.+.+|||||++.+...+..+
T Consensus 8 ~~~~~~~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~ 86 (183)
T 3kkq_A 8 TSAVPSENLPTYKLVVVGDGGVGKSALTIQFFQKIFVDDYDPTIEDSY-LKHTEIDNQWAILDVLDTAGQEEFSAMREQY 86 (183)
T ss_dssp ------CCCCEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCSCGGGCSSHHHH
T ss_pred cccCCccCCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcccee-EEEEEeCCcEEEEEEEECCCchhhHHHHHHH
Confidence 334456667899999999999999999999999988888888887666 5666778888999999999999999999999
Q ss_pred cccccEEEEEEeCCChhhhhhHHHHHHHHhhh--cCCCCEEEEEeCCCCCcc--ccCHHHHHHHHHcCCeEEEeccC-CC
Q 030504 83 YIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNR--QVKAKQVTFHRKKNLQYYEISAK-SN 157 (176)
Q Consensus 83 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~--~~~~p~liv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~S~~-~~ 157 (176)
++.+|++++|||++++.+++.+..|+..+... ..+.|+++|+||+|+... ....+...+++..+++++++||+ ++
T Consensus 87 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~ 166 (183)
T 3kkq_A 87 MRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEMATKYNIPYIETSAKDPP 166 (183)
T ss_dssp HHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTSSCCCEEEEEECTTCSTTCCSCHHHHHHHHHHHTCCEEEEBCSSSC
T ss_pred HhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCCchhccCcCHHHHHHHHHHhCCeEEEeccCCCC
Confidence 99999999999999999999999998888664 358899999999999753 23345668888899999999999 99
Q ss_pred CChHHHHHHHHHHHhcC
Q 030504 158 YNFEKPFLYLARKLAGS 174 (176)
Q Consensus 158 ~~v~~~~~~l~~~i~~~ 174 (176)
.|++++|++|++.+.++
T Consensus 167 ~~v~~l~~~l~~~i~~q 183 (183)
T 3kkq_A 167 LNVDKTFHDLVRVIRQQ 183 (183)
T ss_dssp BSHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHhhC
Confidence 99999999999988753
|
| >3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ... | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-38 Score=214.55 Aligned_cols=169 Identities=80% Similarity=1.313 Sum_probs=156.0
Q ss_pred CCCCCCeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccccccccc
Q 030504 7 QTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHG 86 (176)
Q Consensus 7 ~~~~~~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~ 86 (176)
.......+||+++|.+|||||||+++|+.+.+...+.++.|.+........+...+.+.+|||||++.+...+..+++++
T Consensus 9 ~~~~~~~~ki~v~G~~~~GKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~ 88 (221)
T 3gj0_A 9 QGEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQA 88 (221)
T ss_dssp TTCCCCEEEEEEEECTTSSHHHHHTTBHHHHHTCEEETTTTEEEEEEEEEETTEEEEEEEEEECSGGGTSCCCHHHHTTC
T ss_pred CCCcccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCChHHHhHHHHHHHhcC
Confidence 44556789999999999999999999999988888899999999999888898999999999999999999999999999
Q ss_pred cEEEEEEeCCChhhhhhHHHHHHHHhhhcCCCCEEEEEeCCCCCccccCHHHHHHHHHcCCeEEEeccCCCCChHHHHHH
Q 030504 87 QCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLY 166 (176)
Q Consensus 87 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~ 166 (176)
|++++|||++++.+++.+..|+..+....++.|+++|+||+|+.++....+...+++..+++++++||++|.|++++|.+
T Consensus 89 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 168 (221)
T 3gj0_A 89 QCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLW 168 (221)
T ss_dssp CEEEEEEETTCHHHHHTHHHHHHHHHHHSTTCCEEEEEECTTSSSCSSCGGGCCHHHHHTCEEEECBGGGTBTTTHHHHH
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECCccccccccHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHH
Confidence 99999999999999999999999998887899999999999998777666777888899999999999999999999999
Q ss_pred HHHHHhcCC
Q 030504 167 LARKLAGST 175 (176)
Q Consensus 167 l~~~i~~~~ 175 (176)
|++.+.+.+
T Consensus 169 l~~~l~~~~ 177 (221)
T 3gj0_A 169 LARKLIGDP 177 (221)
T ss_dssp HHHHHHTCT
T ss_pred HHHHHHhCc
Confidence 999987765
|
| >1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-37 Score=203.33 Aligned_cols=168 Identities=32% Similarity=0.512 Sum_probs=146.5
Q ss_pred CCCCCCeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccccccccc
Q 030504 7 QTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHG 86 (176)
Q Consensus 7 ~~~~~~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~ 86 (176)
+......+||+++|.+|+|||||++++..+.+...+.++.+.+........++..+.+.+|||||++.+...+..+++.+
T Consensus 9 ~~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~ 88 (179)
T 1z0f_A 9 PYNYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGA 88 (179)
T ss_dssp --CCSEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGGTCHHHHHHHHTC
T ss_pred ccccccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCChHhhhhHHHHhccC
Confidence 34445689999999999999999999999998888888888888888888888889999999999999999999999999
Q ss_pred cEEEEEEeCCChhhhhhHHHHHHHHhhhc-CCCCEEEEEeCCCCCccc-c-CHHHHHHHHHcCCeEEEeccCCCCChHHH
Q 030504 87 QCAIIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNRQ-V-KAKQVTFHRKKNLQYYEISAKSNYNFEKP 163 (176)
Q Consensus 87 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~liv~nK~Dl~~~~-~-~~~~~~~~~~~~~~~~~~S~~~~~~v~~~ 163 (176)
|++++|+|++++.+++.+..|+..+.... ++.|+++|+||+|+.... . ..+...+++..+++++++||+++.|++++
T Consensus 89 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l 168 (179)
T 1z0f_A 89 AGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDA 168 (179)
T ss_dssp SEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHH
T ss_pred CEEEEEEeCcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHH
Confidence 99999999999999999999988887664 689999999999997533 2 34566888889999999999999999999
Q ss_pred HHHHHHHHhcC
Q 030504 164 FLYLARKLAGS 174 (176)
Q Consensus 164 ~~~l~~~i~~~ 174 (176)
|+++++.+.++
T Consensus 169 ~~~l~~~i~~~ 179 (179)
T 1z0f_A 169 FLEAAKKIYQN 179 (179)
T ss_dssp HHHHHHHHC--
T ss_pred HHHHHHHHhhC
Confidence 99999988753
|
| >3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-37 Score=210.05 Aligned_cols=167 Identities=20% Similarity=0.316 Sum_probs=142.1
Q ss_pred CCCCCeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCcccccccccccccccc
Q 030504 8 TVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQ 87 (176)
Q Consensus 8 ~~~~~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~ 87 (176)
......+||+++|.+|||||||+++|..+.+...+.++.+.++ ......++..+.+.+|||+|++.+...+..+++.+|
T Consensus 22 ~~~~~~~ki~vvG~~~vGKSsL~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d 100 (214)
T 3q3j_B 22 QPVVARCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENY-TACLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSD 100 (214)
T ss_dssp -----CEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEE-EEEEEC--CEEEEEEEEECCSGGGTTTGGGGCTTCS
T ss_pred CCccceEEEEEECcCCCCHHHHHHHHhcCCCCCCcCCeeeeeE-EEEEEECCEEEEEEEEECCCCHhHHHHHHHHcCCCe
Confidence 3456789999999999999999999999999888889988766 445667778899999999999999999999999999
Q ss_pred EEEEEEeCCChhhhhh-HHHHHHHHhhhcCCCCEEEEEeCCCCCcc--------------ccCHHHHHHHHHcCC-eEEE
Q 030504 88 CAIIMFDVTARLTYKN-VPTWHRDLCRVCENIPIVLCGNKVDVKNR--------------QVKAKQVTFHRKKNL-QYYE 151 (176)
Q Consensus 88 ~~i~v~d~~~~~s~~~-~~~~~~~~~~~~~~~p~liv~nK~Dl~~~--------------~~~~~~~~~~~~~~~-~~~~ 151 (176)
++|+|||++++.+++. +..|+..+....++.|+++|+||+|+... ....+...+++..++ ++++
T Consensus 101 ~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e 180 (214)
T 3q3j_B 101 AVLLCFDISRPETVDSALKKWRTEILDYCPSTRVLLIGCKTDLRTDLSTLMELSHQKQAPISYEQGCAIAKQLGAEIYLE 180 (214)
T ss_dssp EEEEEEETTCTHHHHHHHTHHHHHHHHHCTTSEEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHHTCSEEEE
T ss_pred EEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccchhhhhhhcccccCccCHHHHHHHHHHcCCCEEEE
Confidence 9999999999999998 68899998888789999999999999752 233456688899999 9999
Q ss_pred eccCCCCC-hHHHHHHHHHHHhcCC
Q 030504 152 ISAKSNYN-FEKPFLYLARKLAGST 175 (176)
Q Consensus 152 ~S~~~~~~-v~~~~~~l~~~i~~~~ 175 (176)
|||++|.| ++++|+++++.+.++.
T Consensus 181 ~SA~~g~g~v~~lf~~l~~~~~~~~ 205 (214)
T 3q3j_B 181 GSAFTSEKSIHSIFRTASMLCLNKP 205 (214)
T ss_dssp CCTTTCHHHHHHHHHHHHHHHHC--
T ss_pred eccCCCcccHHHHHHHHHHHHhccC
Confidence 99999998 9999999999887654
|
| >2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.9e-37 Score=204.31 Aligned_cols=167 Identities=31% Similarity=0.539 Sum_probs=142.8
Q ss_pred CCCCCeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCcccccccccccccccc
Q 030504 8 TVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQ 87 (176)
Q Consensus 8 ~~~~~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~ 87 (176)
+.....+||+++|.+|||||||++++..+.+...+.++.+.++....+..++..+.+.+|||||++.+...+..+++.+|
T Consensus 16 ~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d 95 (191)
T 2a5j_A 16 PRGSYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGAA 95 (191)
T ss_dssp CTTCEEEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEETTEEEEEEEECCTTGGGTSCCCHHHHTTCS
T ss_pred cccCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCchhhhhhHHHHhccCC
Confidence 34457899999999999999999999999988777888887777777788888899999999999999999999999999
Q ss_pred EEEEEEeCCChhhhhhHHHHHHHHhhhc-CCCCEEEEEeCCCCCccc-c-CHHHHHHHHHcCCeEEEeccCCCCChHHHH
Q 030504 88 CAIIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNRQ-V-KAKQVTFHRKKNLQYYEISAKSNYNFEKPF 164 (176)
Q Consensus 88 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~liv~nK~Dl~~~~-~-~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~ 164 (176)
++++|||++++.+++.+..|+..+.... ++.|+++|+||+|+.... . ..+...+++..++.++++||+++.|++++|
T Consensus 96 ~ii~v~d~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~ 175 (191)
T 2a5j_A 96 GALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLESRRDVKREEGEAFAREHGLIFMETSAKTACNVEEAF 175 (191)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEECTTTCTTHHHHH
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccCCccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHH
Confidence 9999999999999999999998887653 589999999999997532 2 345668888899999999999999999999
Q ss_pred HHHHHHHhcC
Q 030504 165 LYLARKLAGS 174 (176)
Q Consensus 165 ~~l~~~i~~~ 174 (176)
++|++.+.++
T Consensus 176 ~~l~~~i~~~ 185 (191)
T 2a5j_A 176 INTAKEIYRK 185 (191)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999987653
|
| >2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-37 Score=208.07 Aligned_cols=164 Identities=35% Similarity=0.549 Sum_probs=137.6
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccccccccccEEE
Q 030504 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (176)
Q Consensus 11 ~~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 90 (176)
...+||+++|.+|||||||++++..+.+...+.++.+.++....+..++..+.+.+|||||++++...+..+++.+|++|
T Consensus 27 ~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii 106 (201)
T 2hup_A 27 DFLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQERFRTITQSYYRSANGAI 106 (201)
T ss_dssp CEEEEEEEEECTTSSHHHHHHHHHHSCC----------CEEEEEEEETTEEEEEEEECCTTCGGGHHHHHHHHTTCSEEE
T ss_pred ccceEEEEECcCCCCHHHHHHHHhhCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHHhhCCEEE
Confidence 45799999999999999999999999988788888887777777778888899999999999999999999999999999
Q ss_pred EEEeCCChhhhhhHHHHHHHHhhhc-CCCCEEEEEeCCCCCcc-cc-CHHHHHHHHHcCC-eEEEeccCCCCChHHHHHH
Q 030504 91 IMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNR-QV-KAKQVTFHRKKNL-QYYEISAKSNYNFEKPFLY 166 (176)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~liv~nK~Dl~~~-~~-~~~~~~~~~~~~~-~~~~~S~~~~~~v~~~~~~ 166 (176)
+|||++++.+++.+..|+..+.... .+.|+++|+||+|+... .. ..+...+++..++ .++++||+++.|++++|++
T Consensus 107 lv~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~ 186 (201)
T 2hup_A 107 LAYDITKRSSFLSVPHWIEDVRKYAGSNIVQLLIGNKSDLSELREVSLAEAQSLAEHYDILCAIETSAKDSSNVEEAFLR 186 (201)
T ss_dssp EEEETTBHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCSEEEECBTTTTBSHHHHHHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCccccccccCHHHHHHHHHHcCCCEEEEEeCCCCCCHHHHHHH
Confidence 9999999999999999998887765 68999999999999763 22 3456688888999 9999999999999999999
Q ss_pred HHHHHhcC
Q 030504 167 LARKLAGS 174 (176)
Q Consensus 167 l~~~i~~~ 174 (176)
|++.+.++
T Consensus 187 l~~~i~~~ 194 (201)
T 2hup_A 187 VATELIMR 194 (201)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 99988764
|
| >3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-36 Score=202.87 Aligned_cols=165 Identities=30% Similarity=0.552 Sum_probs=148.1
Q ss_pred CCCeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccccccccccEE
Q 030504 10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCA 89 (176)
Q Consensus 10 ~~~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~ 89 (176)
....+||+++|.+|+|||||++++..+.+...+.++.+.+.....+..++..+.+.+|||||++.+...+..+++.+|++
T Consensus 13 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ 92 (196)
T 3tkl_A 13 YDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGI 92 (196)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGCTTHHHHHTTCSEE
T ss_pred cccceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHHhhCCEE
Confidence 34679999999999999999999999998888888988888888888888889999999999999999999999999999
Q ss_pred EEEEeCCChhhhhhHHHHHHHHhhhc-CCCCEEEEEeCCCCCccccC--HHHHHHHHHcCCeEEEeccCCCCChHHHHHH
Q 030504 90 IIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNRQVK--AKQVTFHRKKNLQYYEISAKSNYNFEKPFLY 166 (176)
Q Consensus 90 i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~liv~nK~Dl~~~~~~--~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~ 166 (176)
++|||++++.+++.+..|+..+.... .+.|+++|+||+|+...... .+...++...+++++++||+++.|++++|++
T Consensus 93 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~ 172 (196)
T 3tkl_A 93 IVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMT 172 (196)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCCEEEECTTTCTTHHHHHHH
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHHH
Confidence 99999999999999999998887764 47899999999999754332 4566888899999999999999999999999
Q ss_pred HHHHHhcC
Q 030504 167 LARKLAGS 174 (176)
Q Consensus 167 l~~~i~~~ 174 (176)
|++.+.++
T Consensus 173 l~~~i~~~ 180 (196)
T 3tkl_A 173 MAAEIKKR 180 (196)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99988754
|
| >1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-36 Score=199.43 Aligned_cols=167 Identities=32% Similarity=0.630 Sum_probs=142.4
Q ss_pred CCCeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccccccccccEE
Q 030504 10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCA 89 (176)
Q Consensus 10 ~~~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~ 89 (176)
....+||+++|.+|+|||||+++++.+.+...+.++.+.+.....+..++..+.+.+|||||++.+...+..+++.+|++
T Consensus 4 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ 83 (177)
T 1wms_A 4 KSSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDCC 83 (177)
T ss_dssp CEEEEEEEEECCTTSSHHHHHHHHHHSCCCC----CCSEEEEEEEEEETTEEEEEEEEECCCCGGGHHHHGGGGTTCSEE
T ss_pred ccceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEeCCCchhhhhhHHHHHhcCCEE
Confidence 44679999999999999999999999998888888888888888888888889999999999999999999999999999
Q ss_pred EEEEeCCChhhhhhHHHHHHHHhhhc-----CCCCEEEEEeCCCCCccccC-HHHHHHHH-HcCCeEEEeccCCCCChHH
Q 030504 90 IIMFDVTARLTYKNVPTWHRDLCRVC-----ENIPIVLCGNKVDVKNRQVK-AKQVTFHR-KKNLQYYEISAKSNYNFEK 162 (176)
Q Consensus 90 i~v~d~~~~~s~~~~~~~~~~~~~~~-----~~~p~liv~nK~Dl~~~~~~-~~~~~~~~-~~~~~~~~~S~~~~~~v~~ 162 (176)
++|||++++.+++.+..|+..+.... .+.|+++|+||+|+..+... .+...+++ ..+++++++||++|.|+++
T Consensus 84 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 163 (177)
T 1wms_A 84 LLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDISERQVSTEEAQAWCRDNGDYPYFETSAKDATNVAA 163 (177)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCSSCSSCHHHHHHHHHHTTCCCEEECCTTTCTTHHH
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHHccccccCCCcEEEEEECCcccccccCHHHHHHHHHhcCCceEEEEeCCCCCCHHH
Confidence 99999999999999999988876543 57899999999999754433 34556666 5678999999999999999
Q ss_pred HHHHHHHHHhcCCC
Q 030504 163 PFLYLARKLAGSTD 176 (176)
Q Consensus 163 ~~~~l~~~i~~~~~ 176 (176)
+|+++++.+.++++
T Consensus 164 l~~~l~~~~~~~~d 177 (177)
T 1wms_A 164 AFEEAVRRVLATED 177 (177)
T ss_dssp HHHHHHHHHHTC--
T ss_pred HHHHHHHHHHhhcC
Confidence 99999999988764
|
| >3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-36 Score=199.97 Aligned_cols=165 Identities=32% Similarity=0.553 Sum_probs=145.8
Q ss_pred CCCeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccccccccccEE
Q 030504 10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCA 89 (176)
Q Consensus 10 ~~~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~ 89 (176)
....+||+++|.+|+|||||++++..+.+...+.++.+.+.....+..++..+.+.+|||||++.+...+..+++.+|++
T Consensus 6 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ 85 (181)
T 3tw8_B 6 YDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFRTITSTYYRGTHGV 85 (181)
T ss_dssp CCEEEEEEEECCTTSCHHHHHHHHCSCC---CCTTTBSEEEEEEEEEETTEEEEEEEEEETTGGGCSSCCGGGGTTCSEE
T ss_pred cCcceEEEEECCCCCCHHHHHHHHhcCCCCCccCCCceeEEEEEEEEECCEEEEEEEEcCCCchhhhhhHHHHhccCCEE
Confidence 34679999999999999999999998888878888888888888888888889999999999999999999999999999
Q ss_pred EEEEeCCChhhhhhHHHHHHHHhhhcCCCCEEEEEeCCCCCcccc--CHHHHHHHHHcCCeEEEeccCCCCChHHHHHHH
Q 030504 90 IIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQV--KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYL 167 (176)
Q Consensus 90 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l 167 (176)
++|||++++.+++.+..|+..+....++.|+++|+||+|+..... ..+...++...+++++++||++|.|++++|+++
T Consensus 86 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l 165 (181)
T 3tw8_B 86 IVVYDVTSAESFVNVKRWLHEINQNCDDVCRILVGNKNDDPERKVVETEDAYKFAGQMGIQLFETSAKENVNVEEMFNCI 165 (181)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHCTTSEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCCEEECBTTTTBSHHHHHHHH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECCCCchhcccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHH
Confidence 999999999999999999999988878899999999999976443 245668888889999999999999999999999
Q ss_pred HHHHhcC
Q 030504 168 ARKLAGS 174 (176)
Q Consensus 168 ~~~i~~~ 174 (176)
.+.+.+.
T Consensus 166 ~~~~~~~ 172 (181)
T 3tw8_B 166 TELVLRA 172 (181)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9987653
|
| >1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.7e-37 Score=199.43 Aligned_cols=163 Identities=33% Similarity=0.588 Sum_probs=145.2
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccccccccccEEE
Q 030504 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (176)
Q Consensus 11 ~~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 90 (176)
.+.+||+++|.+|+|||||++++..+.+...+.++.+.++.......++..+.+.+||+||++.+...+..+++.+|+++
T Consensus 4 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i 83 (170)
T 1r2q_A 4 ICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAI 83 (170)
T ss_dssp EEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEE
T ss_pred CceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHhhhhhHHhccCCCEEE
Confidence 46799999999999999999999999988888888888888888888888999999999999999999999999999999
Q ss_pred EEEeCCChhhhhhHHHHHHHHhhh-cCCCCEEEEEeCCCCCccc-c-CHHHHHHHHHcCCeEEEeccCCCCChHHHHHHH
Q 030504 91 IMFDVTARLTYKNVPTWHRDLCRV-CENIPIVLCGNKVDVKNRQ-V-KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYL 167 (176)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~-~~~~p~liv~nK~Dl~~~~-~-~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l 167 (176)
+|||++++.+++.+..|+..+... .++.|+++|+||+|+.... . ..+...+++..+++++++||++|.|++++|++|
T Consensus 84 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~i 163 (170)
T 1r2q_A 84 VVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAI 163 (170)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHH
Confidence 999999999999999998888765 3689999999999997533 2 245667888899999999999999999999999
Q ss_pred HHHHhc
Q 030504 168 ARKLAG 173 (176)
Q Consensus 168 ~~~i~~ 173 (176)
++.+.+
T Consensus 164 ~~~~~~ 169 (170)
T 1r2q_A 164 AKKLPK 169 (170)
T ss_dssp HHTSCC
T ss_pred HHHHhh
Confidence 988764
|
| >2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-36 Score=200.66 Aligned_cols=163 Identities=25% Similarity=0.532 Sum_probs=145.5
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccccccccccEEEE
Q 030504 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAII 91 (176)
Q Consensus 12 ~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~ 91 (176)
..+||+++|.+|+|||||++++..+.+...+.++.+.++.......++..+.+.+|||||++.+...+..++..+|++++
T Consensus 21 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~ 100 (189)
T 2gf9_A 21 YMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERYRTITTAYYRGAMGFLL 100 (189)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCCCEEEEEEEEETTEEEEEEEEECCSCCSSCCSGGGGGTTCSEEEE
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCCCCcCCceeEEEEEEEEEECCeEEEEEEEeCCCcHHHhhhHHHhccCCCEEEE
Confidence 46899999999999999999999999888888888888887777888888999999999999999999999999999999
Q ss_pred EEeCCChhhhhhHHHHHHHHhhhc-CCCCEEEEEeCCCCCccc-c-CHHHHHHHHHcCCeEEEeccCCCCChHHHHHHHH
Q 030504 92 MFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNRQ-V-KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLA 168 (176)
Q Consensus 92 v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~liv~nK~Dl~~~~-~-~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l~ 168 (176)
|||++++.+++.+..|+..+.... ++.|+++|+||+|+.... . ..+...+++..+++++++||++|.|++++|++|+
T Consensus 101 v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~ 180 (189)
T 2gf9_A 101 MYDIANQESFAAVQDWATQIKTYSWDNAQVILVGNKCDLEDERVVPAEDGRRLADDLGFEFFEASAKENINVKQVFERLV 180 (189)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHHHH
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccCCCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHH
Confidence 999999999999999998887764 589999999999997643 2 3456688888999999999999999999999999
Q ss_pred HHHhcC
Q 030504 169 RKLAGS 174 (176)
Q Consensus 169 ~~i~~~ 174 (176)
+.+.++
T Consensus 181 ~~i~~~ 186 (189)
T 2gf9_A 181 DVICEK 186 (189)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 988654
|
| >1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=9.5e-37 Score=198.71 Aligned_cols=164 Identities=30% Similarity=0.598 Sum_probs=145.6
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccccccccccEEE
Q 030504 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (176)
Q Consensus 11 ~~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 90 (176)
...+||+++|.+|+|||||++++..+.+...+.++.+.+........++..+.+.+|||||++.+...+..+++.+|+++
T Consensus 3 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 82 (168)
T 1z2a_A 3 EVAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQACV 82 (168)
T ss_dssp -CEEEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTCCCHHHHTTCCEEE
T ss_pred ceeEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceEEEEEEEEEEECCEEEEEEEEcCCCcHhHHHHHHHHhcCCCEEE
Confidence 35799999999999999999999999888888888887777777778888899999999999999999999999999999
Q ss_pred EEEeCCChhhhhhHHHHHHHHhhhcCCCCEEEEEeCCCCCccc-c-CHHHHHHHHHcCCeEEEeccCCCCChHHHHHHHH
Q 030504 91 IMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQ-V-KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLA 168 (176)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~~~~-~-~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l~ 168 (176)
+|+|++++.+++.+..|+..+....++.|+++|+||+|+.... . ..+...+++..+++++++||+++.|++++|++|.
T Consensus 83 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~ 162 (168)
T 1z2a_A 83 LVFSTTDRESFEAISSWREKVVAEVGDIPTALVQNKIDLLDDSCIKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVFKYLA 162 (168)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHHCSCCEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEECBTTTTBSSHHHHHHHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccCcccccCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHH
Confidence 9999999999999999998887766789999999999997533 2 3456678888899999999999999999999999
Q ss_pred HHHhcC
Q 030504 169 RKLAGS 174 (176)
Q Consensus 169 ~~i~~~ 174 (176)
+.+.++
T Consensus 163 ~~~~~~ 168 (168)
T 1z2a_A 163 EKHLQK 168 (168)
T ss_dssp HHHHC-
T ss_pred HHHhhC
Confidence 988753
|
| >3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-36 Score=202.08 Aligned_cols=166 Identities=25% Similarity=0.398 Sum_probs=144.5
Q ss_pred CCCCeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccccccccccE
Q 030504 9 VDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQC 88 (176)
Q Consensus 9 ~~~~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~ 88 (176)
.....+||+++|.+|+|||||++++..+.+...+.++.+.++.. ....++..+.+.+|||||++.+...+..+++++|+
T Consensus 19 ~~~~~~ki~~vG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~-~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ 97 (194)
T 3reg_A 19 NGKKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFSH-VMKYKNEEFILHLWDTAGQEEYDRLRPLSYADSDV 97 (194)
T ss_dssp --CEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEE-EEEETTEEEEEEEEEECCSGGGTTTGGGGCTTCSE
T ss_pred ccceeeEEEEECcCCCCHHHHHHHHhcCCCCCccCCeeeeeeEE-EEEECCEEEEEEEEECCCcHHHHHHhHhhccCCcE
Confidence 34567999999999999999999999999888888888766554 56677888999999999999999999999999999
Q ss_pred EEEEEeCCChhhhhhH-HHHHHHHhhhcCCCCEEEEEeCCCCCcc----ccCHHHHHHHHHcCCe-EEEeccCCCCChHH
Q 030504 89 AIIMFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGNKVDVKNR----QVKAKQVTFHRKKNLQ-YYEISAKSNYNFEK 162 (176)
Q Consensus 89 ~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~p~liv~nK~Dl~~~----~~~~~~~~~~~~~~~~-~~~~S~~~~~~v~~ 162 (176)
+++|||++++.+++.+ ..|+..+....++.|+++|+||+|+... ....+...+++..++. ++++||++|.|+++
T Consensus 98 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 177 (194)
T 3reg_A 98 VLLCFAVNNRTSFDNISTKWEPEIKHYIDTAKTVLVGLKVDLRKDGSDDVTKQEGDDLCQKLGCVAYIEASSVAKIGLNE 177 (194)
T ss_dssp EEEEEETTCHHHHHHHHHTHHHHHHHHCTTSEEEEEEECGGGCCTTTTCCCHHHHHHHHHHHTCSCEEECBTTTTBSHHH
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccCCCCcccHHHHHHHHHhcCCCEEEEeecCCCCCHHH
Confidence 9999999999999997 6788888877788999999999999742 2334566888888988 99999999999999
Q ss_pred HHHHHHHHHhcCC
Q 030504 163 PFLYLARKLAGST 175 (176)
Q Consensus 163 ~~~~l~~~i~~~~ 175 (176)
+|+++++.+.+++
T Consensus 178 l~~~l~~~i~~~~ 190 (194)
T 3reg_A 178 VFEKSVDCIFSNK 190 (194)
T ss_dssp HHHHHHHHHHCSC
T ss_pred HHHHHHHHHHhcC
Confidence 9999999987764
|
| >1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=100.00 E-value=7.6e-37 Score=199.45 Aligned_cols=163 Identities=33% Similarity=0.588 Sum_probs=144.5
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccccccccccEEEE
Q 030504 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAII 91 (176)
Q Consensus 12 ~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~ 91 (176)
+.+||+++|++|+|||||+++++.+.+...+.++.+.+........++..+.+.+|||||++.+...+..+++++|++++
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i~ 81 (170)
T 1ek0_A 2 TSIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLAPXYYRNAQAALV 81 (170)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEE
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCChhhhhhhhhhhccCcEEEE
Confidence 57999999999999999999999999888888898888888888888888999999999999999999999999999999
Q ss_pred EEeCCChhhhhhHHHHHHHHhhhc-CCCCEEEEEeCCCCCcc----cc-CHHHHHHHHHcCCeEEEeccCCCCChHHHHH
Q 030504 92 MFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNR----QV-KAKQVTFHRKKNLQYYEISAKSNYNFEKPFL 165 (176)
Q Consensus 92 v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~liv~nK~Dl~~~----~~-~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~ 165 (176)
|+|++++.+++.+..|+..+.... ++.|+++|+||+|+... .. ..+...+++..+++++++||++|.|++++|+
T Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 161 (170)
T 1ek0_A 82 VYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDXLQEGGERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVFL 161 (170)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGSSCCCCSCHHHHHHHHHHHTCEEEECCTTTCTTHHHHHH
T ss_pred EEecCChHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCccccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHH
Confidence 999999999999999988887664 68999999999998753 22 2345677888899999999999999999999
Q ss_pred HHHHHHhcC
Q 030504 166 YLARKLAGS 174 (176)
Q Consensus 166 ~l~~~i~~~ 174 (176)
++.+.+.++
T Consensus 162 ~l~~~i~~k 170 (170)
T 1ek0_A 162 GIGEKIPLK 170 (170)
T ss_dssp HHHTTSCCC
T ss_pred HHHHHHhhC
Confidence 999887653
|
| >1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-36 Score=202.37 Aligned_cols=165 Identities=32% Similarity=0.580 Sum_probs=148.3
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccccccccccEEE
Q 030504 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (176)
Q Consensus 11 ~~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 90 (176)
.+.+||+++|.+|||||||++++..+.+...+.++.+.++....+..++..+.+.+|||||++.+...+..+++.+|+++
T Consensus 13 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii 92 (195)
T 1x3s_A 13 LTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRGAQGVI 92 (195)
T ss_dssp EEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCCSHHHHHTTCCEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHcCCCCccCCCccceEEEEEEEEECCeEEEEEEEeCCCchhhhhhhHHHhccCCEEE
Confidence 46799999999999999999999999988888889888888888888888999999999999999999999999999999
Q ss_pred EEEeCCChhhhhhHHHHHHHHhhhc--CCCCEEEEEeCCCCCccccC-HHHHHHHHHcCCeEEEeccCCCCChHHHHHHH
Q 030504 91 IMFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNRQVK-AKQVTFHRKKNLQYYEISAKSNYNFEKPFLYL 167 (176)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~liv~nK~Dl~~~~~~-~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l 167 (176)
+|||++++.+++.+..|+..+.... .+.|+++|+||+|+..+... .+...+++..+++++++||+++.|++++|++|
T Consensus 93 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l 172 (195)
T 1x3s_A 93 LVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKENREVDRNEGLKFARKHSMLFIEASAKTCDGVQCAFEEL 172 (195)
T ss_dssp EEEETTCHHHHHTHHHHHHHHTTCCSCSCCEEEEEEECTTSSSCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhcCcCCCcEEEEEECCcCcccccCHHHHHHHHHHcCCEEEEecCCCCCCHHHHHHHH
Confidence 9999999999999999998887654 57899999999999765443 45668888899999999999999999999999
Q ss_pred HHHHhcCC
Q 030504 168 ARKLAGST 175 (176)
Q Consensus 168 ~~~i~~~~ 175 (176)
++.+.+.+
T Consensus 173 ~~~~~~~~ 180 (195)
T 1x3s_A 173 VEKIIQTP 180 (195)
T ss_dssp HHHHHTSG
T ss_pred HHHHHhhh
Confidence 99987654
|
| >2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-36 Score=200.61 Aligned_cols=169 Identities=31% Similarity=0.512 Sum_probs=145.1
Q ss_pred CCCCCCeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccccccccc
Q 030504 7 QTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHG 86 (176)
Q Consensus 7 ~~~~~~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~ 86 (176)
+..+...+||+++|.+|+|||||++++..+.+...+.++.+.++.......++..+.+.+|||||++.+...+..+++.+
T Consensus 6 ~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~ 85 (181)
T 2efe_B 6 AGNKSINAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGA 85 (181)
T ss_dssp ----CEEEEEEEECCTTSCHHHHHHHHHHCCCTTTSCCCSCCSEEEEEEEETTEEEEEEEEECCCSGGGGGGTHHHHTTC
T ss_pred CCCCccceEEEEECcCCCCHHHHHHHHHcCCCCCcCCCCceeEEEEEEEEECCEEEEEEEEeCCCChhhhhhhHHHhccC
Confidence 34456789999999999999999999999988887788888888777788888889999999999999999999999999
Q ss_pred cEEEEEEeCCChhhhhhHHHHHHHHhhhc-CCCCEEEEEeCCCCCccc--cCHHHHHHHHHcCCeEEEeccCCCCChHHH
Q 030504 87 QCAIIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNRQ--VKAKQVTFHRKKNLQYYEISAKSNYNFEKP 163 (176)
Q Consensus 87 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~liv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~ 163 (176)
|++++|||++++.+++.+..|+..+.... ++.|+++|+||+|+.... ...+...+++..+++++++||++|.|++++
T Consensus 86 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l 165 (181)
T 2efe_B 86 AAAIIVFDVTNQASFERAKKWVQELQAQGNPNMVMALAGNKSDLLDARKVTAEDAQTYAQENGLFFMETSAKTATNVKEI 165 (181)
T ss_dssp SEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEECCSSSCTTHHHH
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCcccccccCCHHHHHHHHHHcCCEEEEEECCCCCCHHHH
Confidence 99999999999999999999998887764 588999999999997533 234566788889999999999999999999
Q ss_pred HHHHHHHHhcCC
Q 030504 164 FLYLARKLAGST 175 (176)
Q Consensus 164 ~~~l~~~i~~~~ 175 (176)
|++|++.+.+.+
T Consensus 166 ~~~l~~~~~~~~ 177 (181)
T 2efe_B 166 FYEIARRLPRVQ 177 (181)
T ss_dssp HHHHHHTCC---
T ss_pred HHHHHHHHHhcC
Confidence 999999887654
|
| >3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-36 Score=206.87 Aligned_cols=174 Identities=29% Similarity=0.486 Sum_probs=138.3
Q ss_pred CCCCCCCCCCCCeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccc
Q 030504 1 MALPSQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRD 80 (176)
Q Consensus 1 ~~~~~~~~~~~~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~ 80 (176)
|+.+.........+||+++|.+|||||||++++..+.+...+.++.+.++....+..++..+.+.+|||||++.+...+.
T Consensus 1 Ms~~~~~~~~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~ 80 (223)
T 3cpj_B 1 MSSEDYGYDYDLLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQERYRAITS 80 (223)
T ss_dssp ---------CCEEEEEEEESCTTSSHHHHHHHHHHCCCCC------CCSEEEEEEEETTEEEEEEEECCTTTTTTTCCCG
T ss_pred CCccccCCCCCeeeEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCccchhhhHH
Confidence 44434334445679999999999999999999999998888888888888777777888889999999999999999999
Q ss_pred cccccccEEEEEEeCCChhhhhhHHHHHHHHhhhc-CCCCEEEEEeCCCCCccc-c-CHHHHHHHHHcCCeEEEeccCCC
Q 030504 81 GYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNRQ-V-KAKQVTFHRKKNLQYYEISAKSN 157 (176)
Q Consensus 81 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~liv~nK~Dl~~~~-~-~~~~~~~~~~~~~~~~~~S~~~~ 157 (176)
.+++.+|++|+|||++++.+++.+..|+..+.... .+.|+++|+||+|+.... . ..+...+++..+++++++||+++
T Consensus 81 ~~~~~~d~vilV~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~ 160 (223)
T 3cpj_B 81 AYYRGAVGALIVYDISKSSSYENCNHWLSELRENADDNVAVGLIGNKSDLAHLRAVPTEESKTFAQENQLLFTETSALNS 160 (223)
T ss_dssp GGTTTCCEEEEEEC-CCHHHHHHHHHHHHHHHHHCC--CEEEEEECCGGGGGGCCSCHHHHHHHHHHTTCEEEECCCC-C
T ss_pred HHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCC
Confidence 99999999999999999999999999998887654 588999999999997532 2 24566788889999999999999
Q ss_pred CChHHHHHHHHHHHhcC
Q 030504 158 YNFEKPFLYLARKLAGS 174 (176)
Q Consensus 158 ~~v~~~~~~l~~~i~~~ 174 (176)
.|++++|++|++.+.++
T Consensus 161 ~gi~~l~~~l~~~i~~~ 177 (223)
T 3cpj_B 161 ENVDKAFEELINTIYQK 177 (223)
T ss_dssp CCHHHHHHHHHHHHTTC
T ss_pred CCHHHHHHHHHHHHHHH
Confidence 99999999999998765
|
| >3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-36 Score=200.12 Aligned_cols=164 Identities=24% Similarity=0.328 Sum_probs=143.8
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccccccccccEEE
Q 030504 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (176)
Q Consensus 11 ~~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 90 (176)
.+.+||+++|.+|+|||||++++..+.+...+.++.+.++ ......++..+.+.+|||||++.+...+..+++.+|+++
T Consensus 4 ~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~i 82 (181)
T 3t5g_A 4 SKSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTF-TKLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDINGYI 82 (181)
T ss_dssp EEEEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCCCTTCCCCGGGTTTCSEEE
T ss_pred CceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCCccccE-EEEEEECCEEEEEEEEeCCCchhhhHHHHHHHhcCCEEE
Confidence 3679999999999999999999999999888888888776 566677888899999999999999999999999999999
Q ss_pred EEEeCCChhhhhhHHHHHHHHhhhc--CCCCEEEEEeCCCCCccc--cCHHHHHHHHHcCCeEEEeccCCCCChHHHHHH
Q 030504 91 IMFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNRQ--VKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLY 166 (176)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~liv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~ 166 (176)
+|||++++.+++.+..|+..+.... .+.|+++|+||+|+.... ...+...+++..+++++++||+++.|++++|++
T Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~ 162 (181)
T 3t5g_A 83 LVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHMERVISYEEGKALAESWNAAFLESSAKENQTAVDVFRR 162 (181)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHC----CCEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEECCTTSHHHHHHHHHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcceecHHHHHHHHHHhCCcEEEEecCCCCCHHHHHHH
Confidence 9999999999999999998886654 489999999999996533 234566889999999999999999999999999
Q ss_pred HHHHHhcCC
Q 030504 167 LARKLAGST 175 (176)
Q Consensus 167 l~~~i~~~~ 175 (176)
+++.+.+..
T Consensus 163 l~~~~~~~~ 171 (181)
T 3t5g_A 163 IILEAEKMD 171 (181)
T ss_dssp HHHHHHTC-
T ss_pred HHHHHHHhc
Confidence 999987654
|
| >1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-36 Score=197.99 Aligned_cols=163 Identities=29% Similarity=0.529 Sum_probs=138.3
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccccccccccEEE
Q 030504 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (176)
Q Consensus 11 ~~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 90 (176)
...+||+++|.+|+|||||++++..+.+...+.++.+.+........++..+.+.+|||||++.+...+..+++.+|+++
T Consensus 4 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i 83 (170)
T 1z08_A 4 AYSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGAI 83 (170)
T ss_dssp CEEEEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC-------CCSSTTCSEEE
T ss_pred CcceEEEEECcCCCCHHHHHHHHHcCCCCcCCCCccceEEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHhccCCEEE
Confidence 45799999999999999999999999888778888888887777778888899999999999999999999999999999
Q ss_pred EEEeCCChhhhhhHHHHHHHHhhhc-CCCCEEEEEeCCCCCccc-c-CHHHHHHHHHcCCeEEEeccCCCCChHHHHHHH
Q 030504 91 IMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNRQ-V-KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYL 167 (176)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~liv~nK~Dl~~~~-~-~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l 167 (176)
+|+|++++.+++.+..|+..+.... ++.|+++|+||+|+.+.. . ..+...+++..+++++++||++|.|++++|++|
T Consensus 84 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l 163 (170)
T 1z08_A 84 LVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLEKERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDL 163 (170)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHHGGGSEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEEBTTTTBSHHHHHHHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECcccccccccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHH
Confidence 9999999999999999988876654 589999999999997632 2 345668888889999999999999999999999
Q ss_pred HHHHhc
Q 030504 168 ARKLAG 173 (176)
Q Consensus 168 ~~~i~~ 173 (176)
++.+.+
T Consensus 164 ~~~~~~ 169 (170)
T 1z08_A 164 CKRMIE 169 (170)
T ss_dssp HHHHHC
T ss_pred HHHHhh
Confidence 998875
|
| >2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-36 Score=203.72 Aligned_cols=162 Identities=35% Similarity=0.617 Sum_probs=144.6
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccccccccccEEEE
Q 030504 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAII 91 (176)
Q Consensus 12 ~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~ 91 (176)
..+||+++|.+|||||||++++..+.+...+.++.+.++....+..++..+.+.+|||||++.+...+..+++.+|++++
T Consensus 25 ~~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~ 104 (201)
T 2ew1_A 25 FLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSANALIL 104 (201)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHGGGSTTCSEEEE
T ss_pred cceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHHhcCCEEEE
Confidence 46899999999999999999999999988888898888888888888888999999999999999999999999999999
Q ss_pred EEeCCChhhhhhHHHHHHHHhhhc-CCCCEEEEEeCCCCCccc-c-CHHHHHHHHHcCCeEEEeccCCCCChHHHHHHHH
Q 030504 92 MFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNRQ-V-KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLA 168 (176)
Q Consensus 92 v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~liv~nK~Dl~~~~-~-~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l~ 168 (176)
|||++++.+++.+..|+..+.... .+.|+++|+||+|+.... . ..+...+++..+++++++||++|.|++++|.+++
T Consensus 105 v~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~ 184 (201)
T 2ew1_A 105 TYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLAERREVSQQRAEEFSEAQDMYYLETSAKESDNVEKLFLDLA 184 (201)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCSSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHHHH
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHH
Confidence 999999999999999998887664 578999999999997532 2 3445677888899999999999999999999999
Q ss_pred HHHhc
Q 030504 169 RKLAG 173 (176)
Q Consensus 169 ~~i~~ 173 (176)
+.+.+
T Consensus 185 ~~i~~ 189 (201)
T 2ew1_A 185 CRLIS 189 (201)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 88764
|
| >2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=100.00 E-value=4.8e-36 Score=197.54 Aligned_cols=167 Identities=28% Similarity=0.559 Sum_probs=137.8
Q ss_pred CCCCCeeEEEEEcCCCCcHHHHHHHHhcCCCC-CccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccccccccc
Q 030504 8 TVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFE-KKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHG 86 (176)
Q Consensus 8 ~~~~~~~~i~i~G~~~~GKttl~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~ 86 (176)
......+||+++|.+|+|||||++++..+.+. ..+.++.+.++.......++..+.+.+|||||++.+...+..+++.+
T Consensus 5 ~~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~ 84 (180)
T 2g6b_A 5 DFYDVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHAYYRDA 84 (180)
T ss_dssp CCCSEEEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC--------CCGGGC
T ss_pred ccCCcceEEEEECcCCCCHHHHHHHHHhCCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHccCC
Confidence 34567899999999999999999999988875 45677888887777777888889999999999999999999999999
Q ss_pred cEEEEEEeCCChhhhhhHHHHHHHHhhhc-CCCCEEEEEeCCCCCccc-c-CHHHHHHHHHcCCeEEEeccCCCCChHHH
Q 030504 87 QCAIIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNRQ-V-KAKQVTFHRKKNLQYYEISAKSNYNFEKP 163 (176)
Q Consensus 87 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~liv~nK~Dl~~~~-~-~~~~~~~~~~~~~~~~~~S~~~~~~v~~~ 163 (176)
|++++|+|++++.+++.+..|+..+.... .+.|+++|+||+|+.... . ..+...+++..+++++++||+++.|++++
T Consensus 85 d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l 164 (180)
T 2g6b_A 85 HALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVDSAHERVVKREDGEKLAKEYGLPFMETSAKTGLNVDLA 164 (180)
T ss_dssp SEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECCSTTSCCCSCHHHHHHHHHHHTCCEEECCTTTCTTHHHH
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccCcccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHH
Confidence 99999999999999999999998887765 589999999999997533 2 33456788888999999999999999999
Q ss_pred HHHHHHHHhcC
Q 030504 164 FLYLARKLAGS 174 (176)
Q Consensus 164 ~~~l~~~i~~~ 174 (176)
|+++++.+.++
T Consensus 165 ~~~l~~~~~~~ 175 (180)
T 2g6b_A 165 FTAIAKELKRR 175 (180)
T ss_dssp HHHHHHHHHC-
T ss_pred HHHHHHHHHHH
Confidence 99999988764
|
| >3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-36 Score=200.01 Aligned_cols=161 Identities=21% Similarity=0.407 Sum_probs=136.7
Q ss_pred CCCCCeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCcccccccccccccccc
Q 030504 8 TVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQ 87 (176)
Q Consensus 8 ~~~~~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~ 87 (176)
+.+.+.+||+++|.+|||||||+++++.+.+...+.++.+ .+ ...+..++..+.+.+|||+|++.+. +++.+|
T Consensus 15 ~~~~~~~ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~t~~-~~-~~~~~~~~~~~~l~i~Dt~G~~~~~-----~~~~~~ 87 (184)
T 3ihw_A 15 YFQGPELKVGIVGNLSSGKSALVHRYLTGTYVQEESPEGG-RF-KKEIVVDGQSYLLLIRDEGGPPELQ-----FAAWVD 87 (184)
T ss_dssp -CCCCEEEEEEECCTTSCHHHHHHHHHHSSCCCCCCTTCE-EE-EEEEEETTEEEEEEEEECSSSCCHH-----HHHHCS
T ss_pred CCCCCeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCCcc-eE-EEEEEECCEEEEEEEEECCCChhhh-----eecCCC
Confidence 4557899999999999999999999999998887777743 33 3667778888999999999998876 778899
Q ss_pred EEEEEEeCCChhhhhhHHHHHHHHhhhc--CCCCEEEEEeCCCCCc---ccc-CHHHHHHHHHcC-CeEEEeccCCCCCh
Q 030504 88 CAIIMFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKN---RQV-KAKQVTFHRKKN-LQYYEISAKSNYNF 160 (176)
Q Consensus 88 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~liv~nK~Dl~~---~~~-~~~~~~~~~~~~-~~~~~~S~~~~~~v 160 (176)
++++|||++++.+++.+..|+..+.... .+.|+++|+||+|+.. +.. ..+...+++..+ +.+++|||++|.|+
T Consensus 88 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~gv 167 (184)
T 3ihw_A 88 AVVFVFSLEDEISFQTVYNYFLRLCSFRNASEVPMVLVGTQDAISAANPRVIDDSRARKLSTDLKRCTYYETCATYGLNV 167 (184)
T ss_dssp EEEEEEETTCHHHHHHHHHHHHHHHTTSCGGGSCEEEEEECTTCBTTBCCCSCHHHHHHHHHHTTTCEEEEEBTTTTBTH
T ss_pred EEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccccCHHHHHHHHHHcCCCeEEEecCCCCCCH
Confidence 9999999999999999999999887753 5889999999999942 222 345667888886 89999999999999
Q ss_pred HHHHHHHHHHHhcCC
Q 030504 161 EKPFLYLARKLAGST 175 (176)
Q Consensus 161 ~~~~~~l~~~i~~~~ 175 (176)
+++|.++++.+.++.
T Consensus 168 ~~lf~~l~~~i~~~~ 182 (184)
T 3ihw_A 168 ERVFQDVAQKVVALR 182 (184)
T ss_dssp HHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999999887653
|
| >2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-36 Score=200.08 Aligned_cols=166 Identities=25% Similarity=0.456 Sum_probs=142.9
Q ss_pred CCCeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecC-cEEEEEEEeCCCccccccccccccccccE
Q 030504 10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNC-GKIRFYCWDTAGQEKFGGLRDGYYIHGQC 88 (176)
Q Consensus 10 ~~~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~D~~g~~~~~~~~~~~~~~~~~ 88 (176)
+.+.+||+++|.+|||||||++++..+.+...+.++.+.+.....+..++ ..+.+.+|||||++.+...+..+++++|+
T Consensus 3 ~~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ 82 (178)
T 2hxs_A 3 HMRQLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQTIGGKMLDKYIYGAQG 82 (178)
T ss_dssp CCCEEEEEEECCTTSSHHHHHHHHHGGGTTHHHHHTTTSSEEEEEEEETTTEEEEEEEEECTTCCTTCTTHHHHHTTCSE
T ss_pred CCceEEEEEECcCCCCHHHHHHHHHhCcCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCCccccchhhHHHhhCCE
Confidence 35679999999999999999999999888777778887777777777765 57899999999999999999999999999
Q ss_pred EEEEEeCCChhhhhhHHHHHHHHhhhc---CCCC-EEEEEeCCCCCccc-c-CHHHHHHHHHcCCeEEEeccCCCCChHH
Q 030504 89 AIIMFDVTARLTYKNVPTWHRDLCRVC---ENIP-IVLCGNKVDVKNRQ-V-KAKQVTFHRKKNLQYYEISAKSNYNFEK 162 (176)
Q Consensus 89 ~i~v~d~~~~~s~~~~~~~~~~~~~~~---~~~p-~liv~nK~Dl~~~~-~-~~~~~~~~~~~~~~~~~~S~~~~~~v~~ 162 (176)
+++|||++++.+++.+..|+..+.... .+.| +++|+||+|+.... . ..+...+++..+++++++||++|.|+++
T Consensus 83 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 162 (178)
T 2hxs_A 83 VLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKIDLEHMRTIKPEKHLRFCQENGFSSHFVSAKTGDSVFL 162 (178)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHHHHHTCCCEEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEEECTTTCTTHHH
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCeEEEEEEccccccccccCHHHHHHHHHHcCCcEEEEeCCCCCCHHH
Confidence 999999999999999999988876643 2555 89999999997632 2 3455678888899999999999999999
Q ss_pred HHHHHHHHHhcCC
Q 030504 163 PFLYLARKLAGST 175 (176)
Q Consensus 163 ~~~~l~~~i~~~~ 175 (176)
+|++|++.+.+.+
T Consensus 163 l~~~l~~~~~~~~ 175 (178)
T 2hxs_A 163 CFQKVAAEILGIK 175 (178)
T ss_dssp HHHHHHHHHTTCC
T ss_pred HHHHHHHHHHhhh
Confidence 9999999988764
|
| >3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-36 Score=200.20 Aligned_cols=163 Identities=21% Similarity=0.338 Sum_probs=137.1
Q ss_pred CCCCeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccccccccccE
Q 030504 9 VDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQC 88 (176)
Q Consensus 9 ~~~~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~ 88 (176)
.+...+||+++|.+|||||||++++..+.+...+.++.+.++ ......++..+.+.+|||+|++.+... ..+++.+|+
T Consensus 17 ~~~~~~ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~-~~~~~~~~~ 94 (187)
T 3c5c_A 17 QGPLEVNLAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTY-SSEETVDHQPVHLRVMDTADLDTPRNC-ERYLNWAHA 94 (187)
T ss_dssp ---CEEEEEEECCTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCC---CCCT-HHHHTTCSE
T ss_pred CCCceEEEEEECCCCCcHHHHHHHHHhCCCCcccCCCcccee-eEEEEECCEEEEEEEEECCCCCcchhH-HHHHhhCCE
Confidence 335789999999999999999999999998888888888665 345667788899999999999988775 668899999
Q ss_pred EEEEEeCCChhhhhhHHHHHHHHhhhc----CCCCEEEEEeCCCCCccc-c-CHHHHHHHHHcCCeEEEecc-CCCCChH
Q 030504 89 AIIMFDVTARLTYKNVPTWHRDLCRVC----ENIPIVLCGNKVDVKNRQ-V-KAKQVTFHRKKNLQYYEISA-KSNYNFE 161 (176)
Q Consensus 89 ~i~v~d~~~~~s~~~~~~~~~~~~~~~----~~~p~liv~nK~Dl~~~~-~-~~~~~~~~~~~~~~~~~~S~-~~~~~v~ 161 (176)
+++|||++++.+++.+..|+..+.... .+.|+++|+||+|+.... . ..+...+++..+++++++|| +++.|++
T Consensus 95 ~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~g~gv~ 174 (187)
T 3c5c_A 95 FLVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLDMAQYRQVTKAEGVALAGRFGCLFFEVSACLDFEHVQ 174 (187)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEECCSSSCSHHHH
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHhhccCCCCCEEEEEECcchhhcCccCHHHHHHHHHHcCCcEEEEeecCccccHH
Confidence 999999999999999999988887653 689999999999997532 2 34567888899999999999 8999999
Q ss_pred HHHHHHHHHHhc
Q 030504 162 KPFLYLARKLAG 173 (176)
Q Consensus 162 ~~~~~l~~~i~~ 173 (176)
++|+++++.+.+
T Consensus 175 ~lf~~l~~~i~~ 186 (187)
T 3c5c_A 175 HVFHEAVREARR 186 (187)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHHhh
Confidence 999999998865
|
| >2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-36 Score=203.96 Aligned_cols=165 Identities=27% Similarity=0.519 Sum_probs=133.9
Q ss_pred CCCeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccccccccccEE
Q 030504 10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCA 89 (176)
Q Consensus 10 ~~~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~ 89 (176)
....+||+++|.+|+|||||+++++.+.+...+.++.+.++.......++..+.+.+|||||++.+...+..+++.+|++
T Consensus 25 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~i 104 (199)
T 2p5s_A 25 SQKAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQERFRSIAKSYFRKADGV 104 (199)
T ss_dssp ---CEEEEEESSTTSSHHHHHHHHHHCCCC----------CEEEEEEETTEEEEEEEEECTTCTTCHHHHHHHHHHCSEE
T ss_pred cCCCeEEEEECcCCCCHHHHHHHHHhCCCCccCCCCccceeEEEEEEECCEEEEEEEEECCCCcchhhhHHHHHhhCCEE
Confidence 34679999999999999999999999988888888888888888888888889999999999999999999999999999
Q ss_pred EEEEeCCChhhhhhHHHHHHHHhhhc-CCCCEEEEEeCCCCCc-------ccc-CHHHHHHHHHcCCeEEEeccCCCCCh
Q 030504 90 IIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKN-------RQV-KAKQVTFHRKKNLQYYEISAKSNYNF 160 (176)
Q Consensus 90 i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~liv~nK~Dl~~-------~~~-~~~~~~~~~~~~~~~~~~S~~~~~~v 160 (176)
++|||++++.+++.+..|+..+.... .+.|+++|+||+|+.. +.. ..+...+++..+++++++||++|.|+
T Consensus 105 ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~SA~~g~gv 184 (199)
T 2p5s_A 105 LLLYDVTCEKSFLNIREWVDMIEDAAHETVPIMLVGNKADIRDTAATEGQKCVPGHFGEKLAMTYGALFCETSAKDGSNI 184 (199)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHC---CCEEEEEECGGGHHHHHHTTCCCCCHHHHHHHHHHHTCEEEECCTTTCTTH
T ss_pred EEEEECCChHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccccccccccCHHHHHHHHHHcCCeEEEeeCCCCCCH
Confidence 99999999999999999988887654 5899999999999963 222 23456788888999999999999999
Q ss_pred HHHHHHHHHHHhcC
Q 030504 161 EKPFLYLARKLAGS 174 (176)
Q Consensus 161 ~~~~~~l~~~i~~~ 174 (176)
+++|.+|++.+.++
T Consensus 185 ~el~~~l~~~i~~~ 198 (199)
T 2p5s_A 185 VEAVLHLAREVKKR 198 (199)
T ss_dssp HHHHHHHHHHHTC-
T ss_pred HHHHHHHHHHHHhh
Confidence 99999999998765
|
| >2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-36 Score=201.81 Aligned_cols=165 Identities=28% Similarity=0.475 Sum_probs=145.8
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccccccccccEEE
Q 030504 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (176)
Q Consensus 11 ~~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 90 (176)
.+.+||+++|.+|+|||||++++..+.+...+.++.+.++.......+...+.+.+|||||++.+...+..+++.+|+++
T Consensus 21 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii 100 (192)
T 2fg5_A 21 IRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQERFHSLAPMYYRGSAAAV 100 (192)
T ss_dssp CEEEEEEEEECTTSSHHHHHHHHHHCCCCTTCCCCSSEEEEEEEEECSSSEEEEEEEEECCSGGGGGGTHHHHTTCSEEE
T ss_pred CCceEEEEECcCCCCHHHHHHHHhcCCCCCCcCCCcceeEEEEEEEeCCEEEEEEEEcCCCchhhHhhhHHhhccCCEEE
Confidence 46899999999999999999999999888788899998888888888888999999999999999999999999999999
Q ss_pred EEEeCCChhhhhhHHHHHHHHhhhc-CCCCEEEEEeCCCCCcc-c-cCHHHHHHHHHcCCeEEEeccCCCCChHHHHHHH
Q 030504 91 IMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNR-Q-VKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYL 167 (176)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~liv~nK~Dl~~~-~-~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l 167 (176)
+|||++++.+++.+..|+..+.... ++.|+++|+||+|+.+. . ...+..++++..+++++++||+++.|++++|++|
T Consensus 101 lV~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l 180 (192)
T 2fg5_A 101 IVYDITKQDSFYTLKKWVKELKEHGPENIVMAIAGNKCDLSDIREVPLKDAKEYAESIGAIVVETSAKNAINIEELFQGI 180 (192)
T ss_dssp EEEETTCTHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHTTTCEEEECBTTTTBSHHHHHHHH
T ss_pred EEEeCCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCcCHHHHHHHH
Confidence 9999999999999999998887764 58999999999999753 2 2345668888899999999999999999999999
Q ss_pred HHHHhcCC
Q 030504 168 ARKLAGST 175 (176)
Q Consensus 168 ~~~i~~~~ 175 (176)
.+.+.+.+
T Consensus 181 ~~~i~~~~ 188 (192)
T 2fg5_A 181 SRQIPPLD 188 (192)
T ss_dssp HHTCC---
T ss_pred HHHHHhhC
Confidence 99887653
|
| >1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-36 Score=196.49 Aligned_cols=163 Identities=27% Similarity=0.544 Sum_probs=138.8
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccccccccccEEEE
Q 030504 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAII 91 (176)
Q Consensus 12 ~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~ 91 (176)
..+||+++|++|+|||||++++..+.+...+.++.+.++.......++..+.+.+|||||++.+...+..+++.+|++++
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~ 81 (170)
T 1g16_A 2 SIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRGAMGIIL 81 (170)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHCCCCC-------CCEEEEEEESSSCEEEEEEECCTTGGGTSCCCHHHHTTEEEEEE
T ss_pred CceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCChhhhhhHHHHhccCCEEEE
Confidence 46899999999999999999999998887788888877777777778888999999999999999999999999999999
Q ss_pred EEeCCChhhhhhHHHHHHHHhhhc-CCCCEEEEEeCCCCCccccC-HHHHHHHHHcCCeEEEeccCCCCChHHHHHHHHH
Q 030504 92 MFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNRQVK-AKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLAR 169 (176)
Q Consensus 92 v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~liv~nK~Dl~~~~~~-~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l~~ 169 (176)
|+|++++.+++.+..|+..+.... ++.|+++|+||+|+..+... .+...+++..+++++++||++|.|++++|+++.+
T Consensus 82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~ 161 (170)
T 1g16_A 82 VYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDMETRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAK 161 (170)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCTTCCSCHHHHHHHHHHHTCCEEECBTTTTBSHHHHHHHHHH
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCCcCccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHH
Confidence 999999999999999988887765 58999999999999654443 3456788888999999999999999999999999
Q ss_pred HHhcC
Q 030504 170 KLAGS 174 (176)
Q Consensus 170 ~i~~~ 174 (176)
.+.++
T Consensus 162 ~~~~~ 166 (170)
T 1g16_A 162 LIQEK 166 (170)
T ss_dssp HHHHT
T ss_pred HHHHH
Confidence 88765
|
| >2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=9.7e-37 Score=201.46 Aligned_cols=162 Identities=30% Similarity=0.572 Sum_probs=115.9
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccccccccccEEEE
Q 030504 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAII 91 (176)
Q Consensus 12 ~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~ 91 (176)
..+||+++|.+|||||||++++..+.+...+.++.+.++....+..++..+.+.+|||||++.+...+..+++.+|++++
T Consensus 7 ~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~ 86 (183)
T 2fu5_C 7 YLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIML 86 (183)
T ss_dssp EEEEEEEECCCCC----------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC---------CCTTTTTCSEEEE
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcccceeEEEEEEECCEEEEEEEEcCCCChhhhhhHHHHHhcCCEEEE
Confidence 57999999999999999999999888887788888888887777788888999999999999999999999999999999
Q ss_pred EEeCCChhhhhhHHHHHHHHhhhc-CCCCEEEEEeCCCCCccc-c-CHHHHHHHHHcCCeEEEeccCCCCChHHHHHHHH
Q 030504 92 MFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNRQ-V-KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLA 168 (176)
Q Consensus 92 v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~liv~nK~Dl~~~~-~-~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l~ 168 (176)
|||++++.+++.+..|+..+.... ++.|+++|+||+|+.+.. . ..+...+++..+++++++||+++.|++++|.+|+
T Consensus 87 v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~ 166 (183)
T 2fu5_C 87 VYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLA 166 (183)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEEC--CCSCCCSCHHHHHHHHHHHTCEEEECCC---CCHHHHHHHHH
T ss_pred EEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECccCCccCcCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHH
Confidence 999999999999999998887653 588999999999997633 2 3456688888999999999999999999999999
Q ss_pred HHHhc
Q 030504 169 RKLAG 173 (176)
Q Consensus 169 ~~i~~ 173 (176)
+.+.+
T Consensus 167 ~~i~~ 171 (183)
T 2fu5_C 167 RDIKA 171 (183)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 98764
|
| >2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.5e-36 Score=196.63 Aligned_cols=166 Identities=30% Similarity=0.515 Sum_probs=143.2
Q ss_pred CCCCCeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCcccccccccccccccc
Q 030504 8 TVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQ 87 (176)
Q Consensus 8 ~~~~~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~ 87 (176)
+++...+||+++|.+|||||||+++++.+.+...+.++.+..+. .....++..+.+.+|||||++.+...+..+++.+|
T Consensus 4 ~~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d 82 (181)
T 2fn4_A 4 PPPSETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYT-KICSVDGIPARLDILDTAGQEEFGAMREQYMRAGH 82 (181)
T ss_dssp CCSSCEEEEEEEECTTSSHHHHHHHHHHSSCCSSCCTTCCEEEE-EEEEETTEEEEEEEEECCCTTTTSCCHHHHHHHCS
T ss_pred CCCCCceEEEEECCCCCCHHHHHHHHHhCcCccccCCCcCceEE-EEEEECCEEEEEEEEECCCchhhHHHHHHHHhhCC
Confidence 35567899999999999999999999999888888888876655 55667777889999999999999999999999999
Q ss_pred EEEEEEeCCChhhhhhHHHHHHHHhhhc--CCCCEEEEEeCCCCCccc-c-CHHHHHHHHHcCCeEEEeccCCCCChHHH
Q 030504 88 CAIIMFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNRQ-V-KAKQVTFHRKKNLQYYEISAKSNYNFEKP 163 (176)
Q Consensus 88 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~liv~nK~Dl~~~~-~-~~~~~~~~~~~~~~~~~~S~~~~~~v~~~ 163 (176)
++++|||++++.+++.+..|+..+.... .+.|+++|+||+|+.... . ..+...++...+++++++||++|.|++++
T Consensus 83 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l 162 (181)
T 2fn4_A 83 GFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQRQVPRSEASAFGASHHVAYFEASAKLRLNVDEA 162 (181)
T ss_dssp EEEEEEETTCHHHHHHHHHHHHHHHHHHTSSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHH
T ss_pred EEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCeEEEecCCCCCCHHHH
Confidence 9999999999999999999888875442 588999999999997633 3 34456778888999999999999999999
Q ss_pred HHHHHHHHhcC
Q 030504 164 FLYLARKLAGS 174 (176)
Q Consensus 164 ~~~l~~~i~~~ 174 (176)
|++|++.+.+.
T Consensus 163 ~~~l~~~~~~~ 173 (181)
T 2fn4_A 163 FEQLVRAVRKY 173 (181)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 99999987653
|
| >2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.3e-36 Score=197.68 Aligned_cols=163 Identities=32% Similarity=0.573 Sum_probs=144.9
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccccccccccEEE
Q 030504 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (176)
Q Consensus 11 ~~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 90 (176)
...+||+++|.+|||||||++++..+.+...+.++.+.+........++..+.+.+|||||++.+...+..+++.+|+++
T Consensus 8 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 87 (186)
T 2bme_A 8 DFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAGAL 87 (186)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTSTTCSEEE
T ss_pred ccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHHhcCCEEE
Confidence 45799999999999999999999999988888888888888888888888899999999999999999999999999999
Q ss_pred EEEeCCChhhhhhHHHHHHHHhhhc-CCCCEEEEEeCCCCCccc-c-CHHHHHHHHHcCCeEEEeccCCCCChHHHHHHH
Q 030504 91 IMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNRQ-V-KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYL 167 (176)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~liv~nK~Dl~~~~-~-~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l 167 (176)
+|||++++.+++.+..|+..+.... .+.|+++|+||+|+.... . ..+...+++..+++++++||++|.|++++|+++
T Consensus 88 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l 167 (186)
T 2bme_A 88 LVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDADREVTFLEASRFAQENELMFLETSALTGENVEEAFVQC 167 (186)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEecCCCCCCHHHHHHHH
Confidence 9999999999999999988876653 589999999999997532 2 245668888899999999999999999999999
Q ss_pred HHHHhc
Q 030504 168 ARKLAG 173 (176)
Q Consensus 168 ~~~i~~ 173 (176)
++.+.+
T Consensus 168 ~~~~~~ 173 (186)
T 2bme_A 168 ARKILN 173 (186)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 998764
|
| >1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.6e-36 Score=195.06 Aligned_cols=163 Identities=28% Similarity=0.517 Sum_probs=145.3
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccccccccccEEE
Q 030504 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (176)
Q Consensus 11 ~~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 90 (176)
.+.+||+++|.+|+|||||++++..+.+...+.++.+.++........+..+.+.+|||||++.+...+..+++.+|+++
T Consensus 4 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i 83 (170)
T 1z0j_A 4 LRELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRALAPMYYRGSAAAI 83 (170)
T ss_dssp EEEEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGTHHHHTTCSEEE
T ss_pred CcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCeEEEEEEEcCCCchhhhcccHhhCcCCCEEE
Confidence 35799999999999999999999999988888899998888888888888899999999999999999999999999999
Q ss_pred EEEeCCChhhhhhHHHHHHHHhhh-cCCCCEEEEEeCCCCCccc-c-CHHHHHHHHHcCCeEEEeccCCCCChHHHHHHH
Q 030504 91 IMFDVTARLTYKNVPTWHRDLCRV-CENIPIVLCGNKVDVKNRQ-V-KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYL 167 (176)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~-~~~~p~liv~nK~Dl~~~~-~-~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l 167 (176)
+|||++++.+++.+..|+..+... .++.|+++|+||+|+.... . ..+...+++..+++++++||+++.|++++|+++
T Consensus 84 ~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~i 163 (170)
T 1z0j_A 84 IVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTDVREVMERDAKDYADSIHAIFVETSAKNAININELFIEI 163 (170)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHSCTTSEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECCccccccccCHHHHHHHHHHcCCEEEEEeCCCCcCHHHHHHHH
Confidence 999999999999999998888776 4688999999999997633 2 344567788889999999999999999999999
Q ss_pred HHHHhc
Q 030504 168 ARKLAG 173 (176)
Q Consensus 168 ~~~i~~ 173 (176)
++.+.+
T Consensus 164 ~~~i~~ 169 (170)
T 1z0j_A 164 SRRIPS 169 (170)
T ss_dssp HHHCCC
T ss_pred HHHHhc
Confidence 998764
|
| >2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=100.00 E-value=6.2e-36 Score=199.39 Aligned_cols=162 Identities=24% Similarity=0.372 Sum_probs=140.6
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccccccccccEEE
Q 030504 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (176)
Q Consensus 11 ~~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 90 (176)
...+||+++|.+|+|||||++++..+.+...+.++.+..+ ...+..++..+.+.+|||||++++...+..+++.+|+++
T Consensus 16 ~~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 94 (194)
T 2atx_A 16 ALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHY-AVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFL 94 (194)
T ss_dssp EEEEEEEEEECTTSSHHHHHHHHHHSSCCCSCCCSSCCCE-EEEEESSSCEEEEEEECCCCSSSSTTTGGGGCTTCSEEE
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccee-EEEEEECCEEEEEEEEECCCCcchhHHHHHhcCCCCEEE
Confidence 4679999999999999999999999988887788876544 344566777899999999999999999999999999999
Q ss_pred EEEeCCChhhhhhHH-HHHHHHhhhcCCCCEEEEEeCCCCCcc-------------cc-CHHHHHHHHHcCC-eEEEecc
Q 030504 91 IMFDVTARLTYKNVP-TWHRDLCRVCENIPIVLCGNKVDVKNR-------------QV-KAKQVTFHRKKNL-QYYEISA 154 (176)
Q Consensus 91 ~v~d~~~~~s~~~~~-~~~~~~~~~~~~~p~liv~nK~Dl~~~-------------~~-~~~~~~~~~~~~~-~~~~~S~ 154 (176)
+|||++++.+++.+. .|+..+....++.|+++|+||+|+... .. ..+...+++..++ +++++||
T Consensus 95 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa 174 (194)
T 2atx_A 95 ICFSVVNPASFQNVKEEWVPELKEYAPNVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVECSA 174 (194)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECTTSTTCHHHHHHHTTTTCCCCCHHHHHHHHHHHTCSCEEECCT
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhcccccchhhcccccCcccCHHHHHHHHHHcCCcEEEEeeC
Confidence 999999999999987 788888877779999999999999753 12 2445678888887 9999999
Q ss_pred CCCCChHHHHHHHHHHHhc
Q 030504 155 KSNYNFEKPFLYLARKLAG 173 (176)
Q Consensus 155 ~~~~~v~~~~~~l~~~i~~ 173 (176)
++|.|++++|+++++.+..
T Consensus 175 ~~g~gi~~l~~~l~~~i~~ 193 (194)
T 2atx_A 175 LTQKGLKTVFDEAIIAILT 193 (194)
T ss_dssp TTCTTHHHHHHHHHHHHHC
T ss_pred CCCCCHHHHHHHHHHHHhc
Confidence 9999999999999998864
|
| >2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-36 Score=201.46 Aligned_cols=166 Identities=28% Similarity=0.565 Sum_probs=137.8
Q ss_pred CCCCeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccccccccccE
Q 030504 9 VDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQC 88 (176)
Q Consensus 9 ~~~~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~ 88 (176)
+....+||+++|.+|+|||||++++..+.+...+.++.+.+.....+..++..+.+.+|||||++.+...+..+++.+|+
T Consensus 22 ~~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ 101 (192)
T 2il1_A 22 PADFKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKG 101 (192)
T ss_dssp CCSEEEEEEEECSTTSSHHHHHHHHCC--------CCTTEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHHHHHHCSE
T ss_pred ccCCceEEEEECCCCCCHHHHHHHHhcCCCCcCCCCccceeEEEEEEEECCeEEEEEEEeCCCcHHHHHHHHHHhcCCCE
Confidence 34567999999999999999999999888877778888888888888888888999999999999999999999999999
Q ss_pred EEEEEeCCChhhhhhHHHHHHHHhhhc-CCCCEEEEEeCCCCCccc-c-CHHHHHHHHHc-CCeEEEeccCCCCChHHHH
Q 030504 89 AIIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNRQ-V-KAKQVTFHRKK-NLQYYEISAKSNYNFEKPF 164 (176)
Q Consensus 89 ~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~liv~nK~Dl~~~~-~-~~~~~~~~~~~-~~~~~~~S~~~~~~v~~~~ 164 (176)
+++|||++++.+++.+..|+..+.... .+.|+++|+||+|+.... . ..+...+++.. +++++++||++|.|++++|
T Consensus 102 iilV~D~~~~~s~~~~~~~~~~i~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~ 181 (192)
T 2il1_A 102 IILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCETDREITRQQGEKFAQQITGMRFCEASAKDNFNVDEIF 181 (192)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHTSTTCEEEECBTTTTBSHHHHH
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHhcCCCeEEEEeCCCCCCHHHHH
Confidence 999999999999999999988887664 489999999999997533 2 23455677664 7899999999999999999
Q ss_pred HHHHHHHhcC
Q 030504 165 LYLARKLAGS 174 (176)
Q Consensus 165 ~~l~~~i~~~ 174 (176)
++|++.+.++
T Consensus 182 ~~l~~~i~~~ 191 (192)
T 2il1_A 182 LKLVDDILKK 191 (192)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHHh
Confidence 9999988754
|
| >2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=6e-36 Score=199.28 Aligned_cols=164 Identities=29% Similarity=0.521 Sum_probs=145.2
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccccccccccEEE
Q 030504 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (176)
Q Consensus 11 ~~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 90 (176)
...+||+++|.+|+|||||++++..+.+...+.++.+.++........+..+.+.+|||||++.+...+..+++.+|+++
T Consensus 23 ~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~vi 102 (193)
T 2oil_A 23 NFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLERYRAITSAYYRGAVGAL 102 (193)
T ss_dssp SEEEEEEEESSTTSSHHHHHHHHHHSCCCSSCCCCSSEEEEEEEEEETTEEEEEEEEEESCCCTTCTTHHHHHTTCCEEE
T ss_pred CcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhccCCEEE
Confidence 35699999999999999999999999888888888888888888888888899999999999999999999999999999
Q ss_pred EEEeCCChhhhhhHHHHHHHHhhhc-CCCCEEEEEeCCCCCccc-c-CHHHHHHHHHcCCeEEEeccCCCCChHHHHHHH
Q 030504 91 IMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNRQ-V-KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYL 167 (176)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~liv~nK~Dl~~~~-~-~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l 167 (176)
+|||++++.+++.+..|+..+.... .+.|+++|+||+|+.... . ..+...+++..+++++++||+++.|++++|++|
T Consensus 103 ~v~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l 182 (193)
T 2oil_A 103 LVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKSDLSQAREVPTEEARMFAENNGLLFLETSALDSTNVELAFETV 182 (193)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHTTSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEECTTTCTTHHHHHHHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECCCcccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHH
Confidence 9999999999999999988887654 588999999999997632 2 345667888889999999999999999999999
Q ss_pred HHHHhcC
Q 030504 168 ARKLAGS 174 (176)
Q Consensus 168 ~~~i~~~ 174 (176)
++.+.++
T Consensus 183 ~~~i~~~ 189 (193)
T 2oil_A 183 LKEIFAK 189 (193)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9987653
|
| >1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-36 Score=198.94 Aligned_cols=164 Identities=24% Similarity=0.407 Sum_probs=140.0
Q ss_pred CCCeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccccccccccEE
Q 030504 10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCA 89 (176)
Q Consensus 10 ~~~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~ 89 (176)
+...+||+++|.+|||||||++++..+.+...+.++.+..+ ......++..+.+.+|||||++.+...+..+++++|++
T Consensus 4 ~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ 82 (184)
T 1m7b_A 4 QNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAV 82 (184)
T ss_dssp --CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEE-EEEEECSSCEEEEEEEEECCSGGGTTTGGGGCTTCSEE
T ss_pred CceEEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeE-EEEEEECCEEEEEEEEECCCChhhhhhHHhhcCCCcEE
Confidence 45689999999999999999999999988887888887655 34556677889999999999999999999999999999
Q ss_pred EEEEeCCChhhhhhH-HHHHHHHhhhcCCCCEEEEEeCCCCCcc-------------cc-CHHHHHHHHHcC-CeEEEec
Q 030504 90 IIMFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGNKVDVKNR-------------QV-KAKQVTFHRKKN-LQYYEIS 153 (176)
Q Consensus 90 i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~p~liv~nK~Dl~~~-------------~~-~~~~~~~~~~~~-~~~~~~S 153 (176)
++|||++++.+++.+ ..|+..+....++.|+++|+||+|+... .. ..+...+++..+ +++++||
T Consensus 83 i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~S 162 (184)
T 1m7b_A 83 LICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECS 162 (184)
T ss_dssp EEEEETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEECB
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEcchhhcchhhHhhhhhcccCCCCHHHHHHHHHHcCCcEEEEee
Confidence 999999999999998 6788888777779999999999999742 12 234567787877 7999999
Q ss_pred cC-CCCChHHHHHHHHHHHhcC
Q 030504 154 AK-SNYNFEKPFLYLARKLAGS 174 (176)
Q Consensus 154 ~~-~~~~v~~~~~~l~~~i~~~ 174 (176)
|+ ++.|++++|+++++.+.++
T Consensus 163 a~~~~~gi~~l~~~i~~~~l~k 184 (184)
T 1m7b_A 163 ALQSENSVRDIFHVATLACVNK 184 (184)
T ss_dssp TTTBHHHHHHHHHHHHHHHHTC
T ss_pred ecCCCcCHHHHHHHHHHHHhcC
Confidence 99 6899999999999988753
|
| >2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.5e-36 Score=197.39 Aligned_cols=165 Identities=29% Similarity=0.563 Sum_probs=144.5
Q ss_pred CCCCeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccccccccccE
Q 030504 9 VDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQC 88 (176)
Q Consensus 9 ~~~~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~ 88 (176)
.+.+.+||+++|.+|+|||||+++++.+.+...+.++.+.+........++..+.+.+|||||++.+...+..++..+|+
T Consensus 10 ~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ 89 (179)
T 2y8e_A 10 NPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTV 89 (179)
T ss_dssp --CEEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGSHHHHHTCSE
T ss_pred CCCcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEECCCcHHHHHHHHHHhcCCCE
Confidence 34567999999999999999999999998888888888888888888888888999999999999999999999999999
Q ss_pred EEEEEeCCChhhhhhHHHHHHHHhhhc-CCCCEEEEEeCCCCCccc-c-CHHHHHHHHHcCCeEEEeccCCCCChHHHHH
Q 030504 89 AIIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNRQ-V-KAKQVTFHRKKNLQYYEISAKSNYNFEKPFL 165 (176)
Q Consensus 89 ~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~liv~nK~Dl~~~~-~-~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~ 165 (176)
+++|+|++++.+++.+..|+..+.... .+.|+++|+||+|+.... . ..+...+++..+++++++||+++.|++++|+
T Consensus 90 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~ 169 (179)
T 2y8e_A 90 AVVVYDITNTNSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFR 169 (179)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEEEBTTTTBSHHHHHH
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCcccccCcCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHH
Confidence 999999999999999999988887654 589999999999997533 2 3445677888899999999999999999999
Q ss_pred HHHHHHhc
Q 030504 166 YLARKLAG 173 (176)
Q Consensus 166 ~l~~~i~~ 173 (176)
+|++.+.+
T Consensus 170 ~l~~~~~~ 177 (179)
T 2y8e_A 170 RVAAALPG 177 (179)
T ss_dssp HHHHTCC-
T ss_pred HHHHHHhh
Confidence 99988764
|
| >2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.7e-36 Score=200.99 Aligned_cols=165 Identities=25% Similarity=0.379 Sum_probs=132.8
Q ss_pred CCCCeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccccccccccE
Q 030504 9 VDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQC 88 (176)
Q Consensus 9 ~~~~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~ 88 (176)
.....+||+++|.+|||||||++++..+.+...+.++.+..+ ......++..+.+.+|||||++.+...+..++.++|+
T Consensus 16 ~~~~~~ki~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ 94 (201)
T 2q3h_A 16 AEGRGVKCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTAFDNF-SAVVSVDGRPVRLQLCDTAGQDEFDKLRPLCYTNTDI 94 (201)
T ss_dssp ----CEEEEEECSTTSSHHHHHHHHHC--------CCSSEEE-EEEEEETTEEEEEEEEECCCSTTCSSSGGGGGTTCSE
T ss_pred CCCcceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccccee-EEEEEECCEEEEEEEEECCCCHHHHHHhHhhcCCCcE
Confidence 456789999999999999999999998888877788876444 4456667788899999999999999999999999999
Q ss_pred EEEEEeCCChhhhhhHH-HHHHHHhhhcCCCCEEEEEeCCCCCcc-------------cc-CHHHHHHHHHcCC-eEEEe
Q 030504 89 AIIMFDVTARLTYKNVP-TWHRDLCRVCENIPIVLCGNKVDVKNR-------------QV-KAKQVTFHRKKNL-QYYEI 152 (176)
Q Consensus 89 ~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~p~liv~nK~Dl~~~-------------~~-~~~~~~~~~~~~~-~~~~~ 152 (176)
+++|||++++.+++.+. .|+..+....++.|+++|+||+|+... .. ..+...+++..++ +++++
T Consensus 95 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 174 (201)
T 2q3h_A 95 FLLCFSVVSPSSFQNVSEKWVPEIRCHCPKAPIILVGTQSDLREDVKVLIELDKCKEKPVPEEAAKLLAEEIKAASYIEC 174 (201)
T ss_dssp EEEEEETTCHHHHHHHHHTHHHHHHHHCSSSCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEEC
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEECHhhhhchhhhhhhcccccccCCHHHHHHHHHhcCCcEEEEE
Confidence 99999999999999987 788888877779999999999999752 12 2345677777787 99999
Q ss_pred ccCCCCChHHHHHHHHHHHhcC
Q 030504 153 SAKSNYNFEKPFLYLARKLAGS 174 (176)
Q Consensus 153 S~~~~~~v~~~~~~l~~~i~~~ 174 (176)
||++|.|++++|+++++.+.+.
T Consensus 175 Sa~~g~gi~~l~~~l~~~~~~~ 196 (201)
T 2q3h_A 175 SALTQKNLKEVFDAAIVAGIQY 196 (201)
T ss_dssp CTTTCTTHHHHHHHHHHHHHHH
T ss_pred ecCCCCCHHHHHHHHHHHHhcc
Confidence 9999999999999999987653
|
| >3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.3e-36 Score=200.39 Aligned_cols=167 Identities=23% Similarity=0.296 Sum_probs=136.0
Q ss_pred CCCCeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCcccccc-cccccccccc
Q 030504 9 VDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGG-LRDGYYIHGQ 87 (176)
Q Consensus 9 ~~~~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~-~~~~~~~~~~ 87 (176)
+....+||+++|.+|||||||+++|..........++.+.+.....+..++..+.+.+|||+|++.+.. ++..+++.+|
T Consensus 19 ~~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~d 98 (195)
T 3cbq_A 19 QKDGIFKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTLVVYDIWEQGDAGGWLRDHCLQTGD 98 (195)
T ss_dssp ---CEEEEEEECSTTSSHHHHHHHTCCEECCGGGTTTSCTTEEEEEEEETTEEEEEEEECCCCCSGGGHHHHHHHHHHCS
T ss_pred CCCcEEEEEEECCCCCCHHHHHHHHHhccCCccCCCCcccceEEEEEEECCEEEEEEEEecCCCccchhhhHHHhhccCC
Confidence 445679999999999999999999865444333344555455555667788889999999999988764 7778889999
Q ss_pred EEEEEEeCCChhhhhhHHHHHHHHhhhc--CCCCEEEEEeCCCCCccc-c-CHHHHHHHHHcCCeEEEeccCCCCChHHH
Q 030504 88 CAIIMFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNRQ-V-KAKQVTFHRKKNLQYYEISAKSNYNFEKP 163 (176)
Q Consensus 88 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~liv~nK~Dl~~~~-~-~~~~~~~~~~~~~~~~~~S~~~~~~v~~~ 163 (176)
++++|||++++.+++.+..|+..+.... .+.|+++|+||+|+.... . ..+...+++..+++++++||+++.|++++
T Consensus 99 ~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sa~~~~~v~~l 178 (195)
T 3cbq_A 99 AFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTREL 178 (195)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEEEBTTTTBSHHHH
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeechhccccCCcCHHHHHHHHHHhCCEEEEEcCCCCCCHHHH
Confidence 9999999999999999999998887654 489999999999997533 3 33566788888999999999999999999
Q ss_pred HHHHHHHHhcCC
Q 030504 164 FLYLARKLAGST 175 (176)
Q Consensus 164 ~~~l~~~i~~~~ 175 (176)
|+++++.+.++.
T Consensus 179 f~~l~~~i~~~~ 190 (195)
T 3cbq_A 179 FEGAVRQIRLRR 190 (195)
T ss_dssp HHHHHHHHHTTC
T ss_pred HHHHHHHHHHhc
Confidence 999999987653
|
| >1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.4e-36 Score=194.34 Aligned_cols=163 Identities=29% Similarity=0.519 Sum_probs=138.4
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccccccccccEEE
Q 030504 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (176)
Q Consensus 11 ~~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 90 (176)
++.+||+++|.+|+|||||++++..+.+...+.++.+... ......++..+.+.+||+||++.+...+..+++.+|+++
T Consensus 2 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i 80 (168)
T 1u8z_A 2 LALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFL 80 (168)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCC---CHHHHHHHHHHCSEEE
T ss_pred CceEEEEEECCCCCCHHHHHHHHHhCccCCCCCCCcceEE-EEEEEECCEEEEEEEEECCCcchhHHHHHHHhhcCCEEE
Confidence 4679999999999999999999999888777777776554 344566778889999999999999999999999999999
Q ss_pred EEEeCCChhhhhhHHHHHHHHhhhcC--CCCEEEEEeCCCCCccc-c-CHHHHHHHHHcCCeEEEeccCCCCChHHHHHH
Q 030504 91 IMFDVTARLTYKNVPTWHRDLCRVCE--NIPIVLCGNKVDVKNRQ-V-KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLY 166 (176)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~~~--~~p~liv~nK~Dl~~~~-~-~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~ 166 (176)
+|||++++.+++.+..|+..+..... +.|+++|+||+|+.... . ..+...+++..+++++++||++|.|++++|++
T Consensus 81 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 160 (168)
T 1u8z_A 81 CVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRADQWNVNYVETSAKTRANVDKVFFD 160 (168)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHHCCTTSCEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEECCTTTCTTHHHHHHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccccccCccCHHHHHHHHHHcCCeEEEeCCCCCCCHHHHHHH
Confidence 99999999999999999888877653 89999999999997532 2 34566788888999999999999999999999
Q ss_pred HHHHHhcC
Q 030504 167 LARKLAGS 174 (176)
Q Consensus 167 l~~~i~~~ 174 (176)
+++.+.++
T Consensus 161 l~~~i~~~ 168 (168)
T 1u8z_A 161 LMREIRAR 168 (168)
T ss_dssp HHHHHHTC
T ss_pred HHHHHHhC
Confidence 99988753
|
| >1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-35 Score=193.06 Aligned_cols=160 Identities=33% Similarity=0.580 Sum_probs=138.8
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccccccccccEEEE
Q 030504 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAII 91 (176)
Q Consensus 12 ~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~ 91 (176)
+.+||+++|.+|||||||++++..+.+...+.++.+.... .....++..+.+.+|||||++.+...+..+++.+|++++
T Consensus 2 ~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~ 80 (167)
T 1c1y_A 2 REYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYR-KQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFAL 80 (167)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHCCCCCSCCCCSEEEEE-EEEESSSCEEEEEEEEECSSCSSTTHHHHHHHHCSEEEE
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccceEE-EEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEE
Confidence 5799999999999999999999999888888888875543 455667788999999999999999999999999999999
Q ss_pred EEeCCChhhhhhHHHHHHHHhhhc--CCCCEEEEEeCCCCCcccc--CHHHHHHHHHc-CCeEEEeccCCCCChHHHHHH
Q 030504 92 MFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNRQV--KAKQVTFHRKK-NLQYYEISAKSNYNFEKPFLY 166 (176)
Q Consensus 92 v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~liv~nK~Dl~~~~~--~~~~~~~~~~~-~~~~~~~S~~~~~~v~~~~~~ 166 (176)
|||++++.+++.+..|+..+.... .+.|+++|+||+|+.+... ..+...+++.. +++++++||++|.|++++|++
T Consensus 81 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 160 (167)
T 1c1y_A 81 VYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYD 160 (167)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHHCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTSCEEEECBTTTTBSHHHHHHH
T ss_pred EEECCCHHHHHHHHHHHHHHHHhhCcCCCcEEEEEECccccccccCCHHHHHHHHHHccCCcEEEecCCCCCCHHHHHHH
Confidence 999999999999999988887653 5899999999999976432 33456777776 799999999999999999999
Q ss_pred HHHHHh
Q 030504 167 LARKLA 172 (176)
Q Consensus 167 l~~~i~ 172 (176)
+++.+.
T Consensus 161 l~~~i~ 166 (167)
T 1c1y_A 161 LVRQIN 166 (167)
T ss_dssp HHHHHT
T ss_pred HHHHHh
Confidence 999875
|
| >2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-35 Score=199.44 Aligned_cols=164 Identities=30% Similarity=0.545 Sum_probs=145.8
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccccccccccEEE
Q 030504 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (176)
Q Consensus 11 ~~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 90 (176)
...+||+++|.+|+|||||++++..+.+...+.++.+.++....+..++..+.+.+|||||++.+...+..+++.+|+++
T Consensus 6 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vi 85 (206)
T 2bcg_Y 6 DYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSHGII 85 (206)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGGTTCSEEE
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEeCCChHHHHHHHHHhccCCCEEE
Confidence 45799999999999999999999999988888888888888777888888899999999999999999999999999999
Q ss_pred EEEeCCChhhhhhHHHHHHHHhhhc-CCCCEEEEEeCCCCCccc-c-CHHHHHHHHHcCCeEEEeccCCCCChHHHHHHH
Q 030504 91 IMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNRQ-V-KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYL 167 (176)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~liv~nK~Dl~~~~-~-~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l 167 (176)
+|||++++.+++.+..|+..+.... ++.|+++|+||+|+.... . ..+...++...+++++++||++|.|++++|.+|
T Consensus 86 lv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l 165 (206)
T 2bcg_Y 86 IVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTM 165 (206)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCCEEECCTTTCTTHHHHHHHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHH
Confidence 9999999999999999998887654 579999999999997633 2 334567888889999999999999999999999
Q ss_pred HHHHhcC
Q 030504 168 ARKLAGS 174 (176)
Q Consensus 168 ~~~i~~~ 174 (176)
++.+.++
T Consensus 166 ~~~i~~~ 172 (206)
T 2bcg_Y 166 ARQIKES 172 (206)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9987653
|
| >3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-36 Score=201.79 Aligned_cols=166 Identities=22% Similarity=0.304 Sum_probs=138.9
Q ss_pred CCCCeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccccccccccE
Q 030504 9 VDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQC 88 (176)
Q Consensus 9 ~~~~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~ 88 (176)
+..+.+||+++|.+|||||||++++..+.+...+.++.+..+ ......++..+.+.+|||||++.+...+..+++.+|+
T Consensus 20 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 98 (201)
T 3oes_A 20 PLVRYRKVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTY-SKIVTLGKDEFHLHLVDTAGQDEYSILPYSFIIGVHG 98 (201)
T ss_dssp ---CEEEEEEEESTTSSHHHHHHHHHHSCCCSCCCCCSEEEE-EEEEC----CEEEEEEEECCCCTTCCCCGGGTTTCCE
T ss_pred CCCCcEEEEEECCCCcCHHHHHHHHHhCCCCCCCCCccceEE-EEEEEECCEEEEEEEEECCCccchHHHHHHHHhcCCE
Confidence 335789999999999999999999999999888888887666 5555566778899999999999999999999999999
Q ss_pred EEEEEeCCChhhhhhHHHHHHHHhhhc--CCCCEEEEEeCCCCCcccc--CHHHHHHHHHcCCeEEEeccCCCCChHHHH
Q 030504 89 AIIMFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNRQV--KAKQVTFHRKKNLQYYEISAKSNYNFEKPF 164 (176)
Q Consensus 89 ~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~liv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~ 164 (176)
+++|||++++.+++.+..|+..+.... .+.|+++|+||+|+..... ..+...+++..+++++++||++|.|++++|
T Consensus 99 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~ 178 (201)
T 3oes_A 99 YVLVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVGNKADLSPEREVQAVEGKKLAESWGATFMESSARENQLTQGIF 178 (201)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHC-----CCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECCTTCHHHHHHHH
T ss_pred EEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCccccccCHHHHHHHHHHhCCeEEEEeCCCCCCHHHHH
Confidence 999999999999999999998887653 5789999999999975332 345668888999999999999999999999
Q ss_pred HHHHHHHhcCC
Q 030504 165 LYLARKLAGST 175 (176)
Q Consensus 165 ~~l~~~i~~~~ 175 (176)
++|++.+.+..
T Consensus 179 ~~l~~~i~~~~ 189 (201)
T 3oes_A 179 TKVIQEIARVE 189 (201)
T ss_dssp HHHHHHHHHC-
T ss_pred HHHHHHHHhhh
Confidence 99999887653
|
| >1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-36 Score=199.59 Aligned_cols=165 Identities=30% Similarity=0.548 Sum_probs=140.6
Q ss_pred CCCCeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccc-ccccccccccc
Q 030504 9 VDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFG-GLRDGYYIHGQ 87 (176)
Q Consensus 9 ~~~~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~-~~~~~~~~~~~ 87 (176)
...+.+||+++|.+|||||||+++++.+.+...+.++.+.++....+..++..+.+.+|||||++.+. ..+..+++.+|
T Consensus 16 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~d 95 (189)
T 1z06_A 16 SRSRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQHYYRNVH 95 (189)
T ss_dssp ---CEEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCSHHHHTTTHHHHHTTCC
T ss_pred CCCceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCchhhhhhhhHHHhcCCC
Confidence 44578999999999999999999999999888888888888887778888888999999999999988 88889999999
Q ss_pred EEEEEEeCCChhhhhhHHHHHHHHhhhc--CCCCEEEEEeCCCCCccc-c-CHHHHHHHHHcCCeEEEeccCCC---CCh
Q 030504 88 CAIIMFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNRQ-V-KAKQVTFHRKKNLQYYEISAKSN---YNF 160 (176)
Q Consensus 88 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~liv~nK~Dl~~~~-~-~~~~~~~~~~~~~~~~~~S~~~~---~~v 160 (176)
++++|||++++.+++.+..|+..+.... .+.|+++|+||+|+.... . ..+...+++..+++++++||+++ .|+
T Consensus 96 ~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~~~~i 175 (189)
T 1z06_A 96 AVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRSAIQVPTDLAQKFADTHSMPLFETSAKNPNDNDHV 175 (189)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHCCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCCEEECCSSSGGGGSCH
T ss_pred EEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceeCHHHHHHHHHHcCCEEEEEeCCcCCcccCH
Confidence 9999999999999999999998887763 589999999999997543 2 34456788889999999999999 999
Q ss_pred HHHHHHHHHHHhc
Q 030504 161 EKPFLYLARKLAG 173 (176)
Q Consensus 161 ~~~~~~l~~~i~~ 173 (176)
+++|.+|++.+.+
T Consensus 176 ~~l~~~l~~~i~~ 188 (189)
T 1z06_A 176 EAIFMTLAHKLKS 188 (189)
T ss_dssp HHHHHHHC-----
T ss_pred HHHHHHHHHHHhh
Confidence 9999999988754
|
| >2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.6e-36 Score=202.21 Aligned_cols=164 Identities=27% Similarity=0.446 Sum_probs=140.2
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccccccccccEEE
Q 030504 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (176)
Q Consensus 11 ~~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 90 (176)
...+||+++|.+|+|||||++++..+.+...+.++.+..+ ...+..++..+.+.+|||||++.+...+..+++.+|+++
T Consensus 7 ~~~~ki~i~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 85 (212)
T 2j0v_A 7 SKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVAVDGQIVNLGLWDTAGQEDYSRLRPLSYRGADIFV 85 (212)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCSSCCCE-EEEEECSSCEEEEEEECCCCCCCCCC--CGGGTTCSEEE
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceeE-EEEEEECCEEEEEEEEECCCcHHHHHHHHhhccCCCEEE
Confidence 4679999999999999999999999998888888887544 345566778899999999999999999999999999999
Q ss_pred EEEeCCChhhhhhHH-HHHHHHhhhcCCCCEEEEEeCCCCCccc----------cCHHHHHHHHHcCC-eEEEeccCCCC
Q 030504 91 IMFDVTARLTYKNVP-TWHRDLCRVCENIPIVLCGNKVDVKNRQ----------VKAKQVTFHRKKNL-QYYEISAKSNY 158 (176)
Q Consensus 91 ~v~d~~~~~s~~~~~-~~~~~~~~~~~~~p~liv~nK~Dl~~~~----------~~~~~~~~~~~~~~-~~~~~S~~~~~ 158 (176)
+|||++++.+++.+. .|+..+....++.|+++|+||+|+.... ...+...+++..++ +++++||++|.
T Consensus 86 lv~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g~ 165 (212)
T 2j0v_A 86 LAFSLISKASYENVLKKWMPELRRFAPNVPIVLVGTKLDLRDDKGYLADHTNVITSTQGEELRKQIGAAAYIECSSKTQQ 165 (212)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECHHHHTCHHHHHTCSSCCCHHHHHHHHHHHTCSEEEECCTTTCT
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeCHHhhhCccccccccCCCCHHHHHHHHHHcCCceEEEccCCCCC
Confidence 999999999999987 7888888777799999999999987542 23445677888885 99999999999
Q ss_pred ChHHHHHHHHHHHhcCC
Q 030504 159 NFEKPFLYLARKLAGST 175 (176)
Q Consensus 159 ~v~~~~~~l~~~i~~~~ 175 (176)
|++++|+++++.+.+.+
T Consensus 166 gi~~l~~~l~~~~~~~~ 182 (212)
T 2j0v_A 166 NVKAVFDTAIKVVLQPP 182 (212)
T ss_dssp THHHHHHHHHHHHHCC-
T ss_pred CHHHHHHHHHHHHhhhh
Confidence 99999999999887643
|
| >2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-36 Score=201.29 Aligned_cols=163 Identities=31% Similarity=0.576 Sum_probs=134.3
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccccccccccEEE
Q 030504 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (176)
Q Consensus 11 ~~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 90 (176)
...+||+++|.+|||||||++++..+.+...+.++.+.+.....+..++..+.+.+|||||++.+...+..+++.+|+++
T Consensus 23 ~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i 102 (200)
T 2o52_A 23 DFLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGAL 102 (200)
T ss_dssp CEEEEEEEEESTTSSHHHHHHHHHC------------CCEEEEEEEETTEEEEEEEECCTTHHHHSCCCHHHHTTCSEEE
T ss_pred CcceEEEEECcCCCCHHHHHHHHHhCCCCccCCCcccceeEEEEEEECCeeeEEEEEcCCCcHhHHHHHHHHhccCCEEE
Confidence 35799999999999999999999998888778888887777777778888899999999999999999999999999999
Q ss_pred EEEeCCChhhhhhHHHHHHHHhhhc-CCCCEEEEEeCCCCCccc-c-CHHHHHHHHHcCCeEEEeccCCCCChHHHHHHH
Q 030504 91 IMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNRQ-V-KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYL 167 (176)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~liv~nK~Dl~~~~-~-~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l 167 (176)
+|||++++.+++.+..|+..+.... ++.|+++|+||+|+.... . ..+...+++..+++++++||++|.|++++|.+|
T Consensus 103 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l 182 (200)
T 2o52_A 103 LVYDITSRETYNSLAAWLTDARTLASPNIVVILCGNKKDLDPEREVTFLEASRFAQENELMFLETSALTGENVEEAFLKC 182 (200)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHTCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEECTTTCTTHHHHHHHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCcccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHH
Confidence 9999999999999999988887654 589999999999997533 2 245667888899999999999999999999999
Q ss_pred HHHHhc
Q 030504 168 ARKLAG 173 (176)
Q Consensus 168 ~~~i~~ 173 (176)
++.+.+
T Consensus 183 ~~~i~~ 188 (200)
T 2o52_A 183 ARTILN 188 (200)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 998764
|
| >1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=100.00 E-value=9.3e-36 Score=199.83 Aligned_cols=163 Identities=26% Similarity=0.540 Sum_probs=144.9
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccccccccccEEE
Q 030504 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (176)
Q Consensus 11 ~~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 90 (176)
...+||+++|.+|||||||+++++.+.+...+.++.+.++.......++..+.+.+|||||++.+...+..+++.+|+++
T Consensus 6 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii 85 (203)
T 1zbd_A 6 DYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLERYRTITTAYYRGAMGFI 85 (203)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHTCCCCSCCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTGGGCSEEE
T ss_pred ceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEEECCeEEEEEEEECCCchhhcchHHHhhcCCCEEE
Confidence 35799999999999999999999999888888888888888888888888999999999999999999999999999999
Q ss_pred EEEeCCChhhhhhHHHHHHHHhhhc-CCCCEEEEEeCCCCCccc-c-CHHHHHHHHHcCCeEEEeccCCCCChHHHHHHH
Q 030504 91 IMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNRQ-V-KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYL 167 (176)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~liv~nK~Dl~~~~-~-~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l 167 (176)
+|||++++.+++.+..|+..+.... .+.|+++|+||+|+.... . ..+...+++..+++++++||++|.|++++|++|
T Consensus 86 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l 165 (203)
T 1zbd_A 86 LMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERL 165 (203)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHSCSSCEEEEEEECTTCTTSCCSCHHHHHHHHHHHTCEEEECBTTTTBSSHHHHHHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccCcccccCHHHHHHHHHHCCCeEEEEECCCCCCHHHHHHHH
Confidence 9999999999999999998887764 589999999999997633 2 344567888889999999999999999999999
Q ss_pred HHHHhc
Q 030504 168 ARKLAG 173 (176)
Q Consensus 168 ~~~i~~ 173 (176)
++.+.+
T Consensus 166 ~~~i~~ 171 (203)
T 1zbd_A 166 VDVICE 171 (203)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 988754
|
| >1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ... | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-35 Score=196.45 Aligned_cols=164 Identities=26% Similarity=0.467 Sum_probs=141.3
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccccccccccEEE
Q 030504 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (176)
Q Consensus 11 ~~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 90 (176)
+..+||+++|.+|+|||||++++..+.+...+.++.+... ......++..+.+.+|||||++.+...+..+++.+|+++
T Consensus 3 ~~~~~i~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 81 (186)
T 1mh1_A 3 PQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSL 81 (186)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHSSCCSSCCCCSCCEE-EEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEE
T ss_pred CcEEEEEEECCCCCCHHHHHHHHHcCCCCCCcCCccccee-EEEEEECCEEEEEEEEECCCCHhHHHHHHHhccCCcEEE
Confidence 4679999999999999999999999988877777776444 345567788899999999999999999999999999999
Q ss_pred EEEeCCChhhhhhHH-HHHHHHhhhcCCCCEEEEEeCCCCCccc--------------cCHHHHHHHHHcCC-eEEEecc
Q 030504 91 IMFDVTARLTYKNVP-TWHRDLCRVCENIPIVLCGNKVDVKNRQ--------------VKAKQVTFHRKKNL-QYYEISA 154 (176)
Q Consensus 91 ~v~d~~~~~s~~~~~-~~~~~~~~~~~~~p~liv~nK~Dl~~~~--------------~~~~~~~~~~~~~~-~~~~~S~ 154 (176)
+|||++++.+++.+. .|+..+....++.|+++|+||+|+.... ...+...+++..++ +++++||
T Consensus 82 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa 161 (186)
T 1mh1_A 82 ICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSA 161 (186)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHSTTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCT
T ss_pred EEEECCChhhHHHHHHHHHHHHHHhCCCCCEEEEeEcccccccchhhhhhcccccccCCHHHHHHHHHhcCCcEEEEecC
Confidence 999999999999987 6888888777799999999999986531 12345577788886 9999999
Q ss_pred CCCCChHHHHHHHHHHHhcCC
Q 030504 155 KSNYNFEKPFLYLARKLAGST 175 (176)
Q Consensus 155 ~~~~~v~~~~~~l~~~i~~~~ 175 (176)
++|.|++++|+++++.+.+.+
T Consensus 162 ~~g~gi~~l~~~l~~~~~~~~ 182 (186)
T 1mh1_A 162 LTQRGLKTVFDEAIRAVLCPP 182 (186)
T ss_dssp TTCTTHHHHHHHHHHHHSCCC
T ss_pred CCccCHHHHHHHHHHHHhccc
Confidence 999999999999999988765
|
| >2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.6e-36 Score=201.89 Aligned_cols=166 Identities=28% Similarity=0.504 Sum_probs=121.1
Q ss_pred CCCCeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccccccccccE
Q 030504 9 VDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQC 88 (176)
Q Consensus 9 ~~~~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~ 88 (176)
...+.+||+++|.+|||||||++++..+.+...+.++.+..+ ......++..+.+.+|||||++.+...+..++.++|+
T Consensus 30 ~~~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ 108 (214)
T 2j1l_A 30 PGVRSVKVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFERY-MVNLQVKGKPVHLHIWDTAGQDDYDRLRPLFYPDASV 108 (214)
T ss_dssp --CCEEEEEEEECTTSSHHHHHHHHHC-------CCCCCEEE-EEEEEETTEEEEEEEEEC---------------CEEE
T ss_pred CCcceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCccceeE-EEEEEECCEEEEEEEEECCCchhhhHHHHHHhccCCE
Confidence 445789999999999999999999998888777777775433 4456677788899999999999999999999999999
Q ss_pred EEEEEeCCChhhhhhHH-HHHHHHhhhcCCCCEEEEEeCCCCCccc-------------c-CHHHHHHHHHcCC-eEEEe
Q 030504 89 AIIMFDVTARLTYKNVP-TWHRDLCRVCENIPIVLCGNKVDVKNRQ-------------V-KAKQVTFHRKKNL-QYYEI 152 (176)
Q Consensus 89 ~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~p~liv~nK~Dl~~~~-------------~-~~~~~~~~~~~~~-~~~~~ 152 (176)
+++|||++++.+++.+. .|+..+....++.|+++|+||+|+.... . ..+...+++..++ +++++
T Consensus 109 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 188 (214)
T 2j1l_A 109 LLLCFDVTSPNSFDNIFNRWYPEVNHFCKKVPIIVVGCKTDLRKDKSLVNKLRRNGLEPVTYHRGQEMARSVGAVAYLEC 188 (214)
T ss_dssp EEEEEETTCHHHHHHHHHTHHHHHHHHCSSCCEEEEEECGGGGSCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEEC
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhhccchhhhhhcccccCcccHHHHHHHHHhcCCCEEEEe
Confidence 99999999999999987 7888888777799999999999997532 1 2345677888887 99999
Q ss_pred ccCCCCChHHHHHHHHHHHhcCC
Q 030504 153 SAKSNYNFEKPFLYLARKLAGST 175 (176)
Q Consensus 153 S~~~~~~v~~~~~~l~~~i~~~~ 175 (176)
||++|.|++++|++|++.+.+.+
T Consensus 189 SA~~g~gi~el~~~l~~~~~~~~ 211 (214)
T 2j1l_A 189 SARLHDNVHAVFQEAAEVALSSR 211 (214)
T ss_dssp BTTTTBSHHHHHHHHHHHHHHC-
T ss_pred cCCCCCCHHHHHHHHHHHHHHhh
Confidence 99999999999999999987654
|
| >3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-35 Score=193.69 Aligned_cols=162 Identities=22% Similarity=0.287 Sum_probs=126.2
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCcccccc-ccccccccccEEEE
Q 030504 13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGG-LRDGYYIHGQCAII 91 (176)
Q Consensus 13 ~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~-~~~~~~~~~~~~i~ 91 (176)
.+||+++|.+|||||||++++..+.......++.+.+........++..+.+.+||++|++.+.. .+..+++.+|++++
T Consensus 2 ~~ki~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~ 81 (169)
T 3q85_A 2 VFKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQGDAGGWLQDHCLQTGDAFLI 81 (169)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCC------------CEEEEEEEETTEEEEEEEECCCCC--------CHHHHHCSEEEE
T ss_pred cEEEEEECCCCCCHHHHHHHHHhccCcccccCCCcCCeeeEEEEECCeEEEEEEEECCCccccchhhhhhhhccCCEEEE
Confidence 58999999999999999999887776655555555666666777888899999999999998876 77778899999999
Q ss_pred EEeCCChhhhhhHHHHHHHHhhhcC--CCCEEEEEeCCCCCcc-c-cCHHHHHHHHHcCCeEEEeccCCCCChHHHHHHH
Q 030504 92 MFDVTARLTYKNVPTWHRDLCRVCE--NIPIVLCGNKVDVKNR-Q-VKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYL 167 (176)
Q Consensus 92 v~d~~~~~s~~~~~~~~~~~~~~~~--~~p~liv~nK~Dl~~~-~-~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l 167 (176)
|||++++.+++.+..|+..+....+ +.|+++|+||+|+... . ...+...+++..+++++++||+++.|++++|+++
T Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l 161 (169)
T 3q85_A 82 VFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEGA 161 (169)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHHH
T ss_pred EEECCChHHHHHHHHHHHHHHhcccCCCCCEEEEeeCcchhhcccCCHHHHHHHHHHcCCcEEEecCccCCCHHHHHHHH
Confidence 9999999999999999988877653 8999999999999743 2 3344567888999999999999999999999999
Q ss_pred HHHHhcC
Q 030504 168 ARKLAGS 174 (176)
Q Consensus 168 ~~~i~~~ 174 (176)
++.+.++
T Consensus 162 ~~~i~~~ 168 (169)
T 3q85_A 162 VRQIRLR 168 (169)
T ss_dssp HHHHHHT
T ss_pred HHHHHhc
Confidence 9988754
|
| >2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ... | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-35 Score=198.22 Aligned_cols=165 Identities=28% Similarity=0.454 Sum_probs=140.1
Q ss_pred CCCCCeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCcccccccccccccccc
Q 030504 8 TVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQ 87 (176)
Q Consensus 8 ~~~~~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~ 87 (176)
.++...+||+++|.+|+|||||++++..+.+...+.++.+.++.. ....++..+.+.+|||||++.+...+..+++.+|
T Consensus 20 ~m~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~-~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d 98 (201)
T 2gco_A 20 HMAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYIA-DIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTD 98 (201)
T ss_dssp --CCEEEEEEEEESTTSSHHHHHHHHHHSSCCSSCCCSSCCCCEE-EEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCS
T ss_pred CCcccceEEEEECCCCCCHHHHHHHHHhCcCCcccCCcccceEEE-EEEECCEEEEEEEEECCCchhHHHHHHHhcCCCC
Confidence 345568999999999999999999999998887777887755543 3566778889999999999999999999999999
Q ss_pred EEEEEEeCCChhhhhhH-HHHHHHHhhhcCCCCEEEEEeCCCCCccc-------------c-CHHHHHHHHHcCC-eEEE
Q 030504 88 CAIIMFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGNKVDVKNRQ-------------V-KAKQVTFHRKKNL-QYYE 151 (176)
Q Consensus 88 ~~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~p~liv~nK~Dl~~~~-------------~-~~~~~~~~~~~~~-~~~~ 151 (176)
++++|||++++.+++.+ ..|+..+....++.|+++|+||+|+.... . ..+...+++..++ ++++
T Consensus 99 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 178 (201)
T 2gco_A 99 VILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLE 178 (201)
T ss_dssp EEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECGGGTTCHHHHHHHHTTTCCCCCHHHHHHHHHHTTCSEEEE
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEecHHhhcCccchhhhcccccCcCCHHHHHHHHHhCCCcEEEE
Confidence 99999999999999998 57888887777799999999999997531 1 2345577778887 8999
Q ss_pred eccCCCCChHHHHHHHHHHHhc
Q 030504 152 ISAKSNYNFEKPFLYLARKLAG 173 (176)
Q Consensus 152 ~S~~~~~~v~~~~~~l~~~i~~ 173 (176)
+||++|.|++++|++|++.+.+
T Consensus 179 ~SA~~g~gi~~l~~~i~~~~l~ 200 (201)
T 2gco_A 179 CSAKTKEGVREVFEMATRAGLQ 200 (201)
T ss_dssp CCTTTCTTHHHHHHHHHHHHHC
T ss_pred eeCCCCCCHHHHHHHHHHHHhc
Confidence 9999999999999999998764
|
| >3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-35 Score=197.18 Aligned_cols=164 Identities=29% Similarity=0.528 Sum_probs=142.7
Q ss_pred CCCeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEe-EEEEEecCc---------EEEEEEEeCCCcccccccc
Q 030504 10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVH-PLDFFTNCG---------KIRFYCWDTAGQEKFGGLR 79 (176)
Q Consensus 10 ~~~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~---------~~~~~~~D~~g~~~~~~~~ 79 (176)
....+||+++|.+|+|||||++++..+.+...+.++.+.++. ......++. .+.+.+|||||++.+...+
T Consensus 8 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~ 87 (195)
T 3bc1_A 8 YDYLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGLERFRSLT 87 (195)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEECTTSCCCSSCCCEEEEEEEEEECCSGGGHHHH
T ss_pred cceeEEEEEECCCCCCHHHHHHHHhcCCCCcCcccccceeeeeEEEEEecCCcccccccCcEEEEEEEeCCCcHHHHHHH
Confidence 456799999999999999999999999888888888887776 555555555 7899999999999999999
Q ss_pred ccccccccEEEEEEeCCChhhhhhHHHHHHHHhhhc--CCCCEEEEEeCCCCCccc-c-CHHHHHHHHHcCCeEEEeccC
Q 030504 80 DGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNRQ-V-KAKQVTFHRKKNLQYYEISAK 155 (176)
Q Consensus 80 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~liv~nK~Dl~~~~-~-~~~~~~~~~~~~~~~~~~S~~ 155 (176)
..+++.+|++++|||++++.+++.+..|+..+.... .+.|+++|+||+|+.... . ..+...++...+++++++||+
T Consensus 88 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 167 (195)
T 3bc1_A 88 TAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPDIVLCGNKSDLEDQRAVKEEEARELAEKYGIPYFETSAA 167 (195)
T ss_dssp HHTTTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSSSSSCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCCEEECCTT
T ss_pred HHHHcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCCEEEEECC
Confidence 999999999999999999999999999998887765 589999999999997632 2 345667888889999999999
Q ss_pred CCCChHHHHHHHHHHHhc
Q 030504 156 SNYNFEKPFLYLARKLAG 173 (176)
Q Consensus 156 ~~~~v~~~~~~l~~~i~~ 173 (176)
++.|++++|++|++.+.+
T Consensus 168 ~~~~v~~l~~~l~~~~~~ 185 (195)
T 3bc1_A 168 NGTNISHAIEMLLDLIMK 185 (195)
T ss_dssp TCTTHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHH
Confidence 999999999999998764
|
| >1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=100.00 E-value=7.8e-36 Score=200.53 Aligned_cols=163 Identities=24% Similarity=0.407 Sum_probs=139.9
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccccccccccEEE
Q 030504 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (176)
Q Consensus 11 ~~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 90 (176)
...+||+++|.+|||||||+++|..+.+...+.++.+.++ ...+..++..+.+.+|||+|++.+...+..+++++|+++
T Consensus 26 ~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i 104 (205)
T 1gwn_A 26 NVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVL 104 (205)
T ss_dssp -CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEE-EEEEESSSSEEEEEEEEECCSGGGTTTGGGGCTTCSEEE
T ss_pred ceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeE-EEEEEECCEEEEEEEEeCCCcHhhhHHHHhhccCCCEEE
Confidence 4679999999999999999999999998888888887665 345566778899999999999999999999999999999
Q ss_pred EEEeCCChhhhhhH-HHHHHHHhhhcCCCCEEEEEeCCCCCcc-------------cc-CHHHHHHHHHcC-CeEEEecc
Q 030504 91 IMFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGNKVDVKNR-------------QV-KAKQVTFHRKKN-LQYYEISA 154 (176)
Q Consensus 91 ~v~d~~~~~s~~~~-~~~~~~~~~~~~~~p~liv~nK~Dl~~~-------------~~-~~~~~~~~~~~~-~~~~~~S~ 154 (176)
+|||++++.+++.+ ..|+..+....++.|+++|+||+|+... .. ..+...+++..+ +.+++|||
T Consensus 105 lv~D~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~SA 184 (205)
T 1gwn_A 105 ICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSA 184 (205)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEECCT
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEechhhccchhhhhhhcccccCCCCHHHHHHHHHHcCCCEEEEeee
Confidence 99999999999998 6888888777779999999999999742 12 234567787777 79999999
Q ss_pred C-CCCChHHHHHHHHHHHhcC
Q 030504 155 K-SNYNFEKPFLYLARKLAGS 174 (176)
Q Consensus 155 ~-~~~~v~~~~~~l~~~i~~~ 174 (176)
+ ++.|++++|+++++.+.++
T Consensus 185 k~~~~gv~~lf~~l~~~~l~~ 205 (205)
T 1gwn_A 185 LQSENSVRDIFHVATLACVNK 205 (205)
T ss_dssp TTCHHHHHHHHHHHHHHHHHC
T ss_pred ccCCcCHHHHHHHHHHHHhhC
Confidence 9 6899999999999988653
|
| >3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.4e-37 Score=203.86 Aligned_cols=165 Identities=19% Similarity=0.173 Sum_probs=139.0
Q ss_pred CCCCeeEEEEEcCCCCcHHHHHHHHhcCCCCCcc-----------ccceeEEEeEEEE-EecCcEEEEEEEeCCCccccc
Q 030504 9 VDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKY-----------EPTIGVEVHPLDF-FTNCGKIRFYCWDTAGQEKFG 76 (176)
Q Consensus 9 ~~~~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~-----------~~~~~~~~~~~~~-~~~~~~~~~~~~D~~g~~~~~ 76 (176)
.....+||+++|.+|||||||++ ++.+.+...+ .++.+.++..... ..++..+.+.+|||||++.+.
T Consensus 10 ~~~~~~ki~vvG~~~~GKssL~~-~l~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~ 88 (198)
T 3t1o_A 10 NREINFKIVYYGPGLSGKTTNLK-WIYSKVPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKTRFHLYTVPGQVFYN 88 (198)
T ss_dssp TTEEEEEEEEECSTTSSHHHHHH-HHHHTSCGGGBCCCEEEECSSCEEEEEEECCSSCCCSSSCEEEEEEEECCSCCSCS
T ss_pred ccccccEEEEECCCCCCHHHHHH-HHHhhccccccccccccccccccceeeeecccccccccCCceEEEEEeCCChHHHH
Confidence 44568999999999999999996 5667766553 3466666666555 667788999999999999999
Q ss_pred cccccccccccEEEEEEeCC------ChhhhhhHHHHHHHHhhhcCCCCEEEEEeCCCCCccccCHHHHHHHHHcCC-eE
Q 030504 77 GLRDGYYIHGQCAIIMFDVT------ARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNL-QY 149 (176)
Q Consensus 77 ~~~~~~~~~~~~~i~v~d~~------~~~s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~~~~~~~~~~~~~~~~~~-~~ 149 (176)
..+..+++++|++++|||++ +..+++.+..|+..+....++.|+++|+||+|+.+.....+..++++..++ ++
T Consensus 89 ~~~~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~ 168 (198)
T 3t1o_A 89 ASRKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYGLTLDDVPIVIQVNKRDLPDALPVEMVRAVVDPEGKFPV 168 (198)
T ss_dssp HHHHHHTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCTTSSCEEEEEECTTSTTCCCHHHHHHHHCTTCCSCE
T ss_pred HHHHHHHhcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhhccccCCCCEEEEEEchhcccccCHHHHHHHHHhcCCceE
Confidence 99999999999999999999 456777777777777544578999999999999887666777888889999 99
Q ss_pred EEeccCCCCChHHHHHHHHHHHhcC
Q 030504 150 YEISAKSNYNFEKPFLYLARKLAGS 174 (176)
Q Consensus 150 ~~~S~~~~~~v~~~~~~l~~~i~~~ 174 (176)
+++||++|.|++++|++|++.+.++
T Consensus 169 ~~~Sa~~~~gv~~l~~~l~~~i~~~ 193 (198)
T 3t1o_A 169 LEAVATEGKGVFETLKEVSRLVLAR 193 (198)
T ss_dssp EECBGGGTBTHHHHHHHHHHHHHHH
T ss_pred EEEecCCCcCHHHHHHHHHHHHHHH
Confidence 9999999999999999999988654
|
| >1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-35 Score=198.27 Aligned_cols=164 Identities=34% Similarity=0.644 Sum_probs=143.3
Q ss_pred CCCeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccccccccccEE
Q 030504 10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCA 89 (176)
Q Consensus 10 ~~~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~ 89 (176)
....+||+++|.+|+|||||+++++.+.+...+.++.+.+.....+..++..+.+.+|||||++.+...+..+++.+|++
T Consensus 5 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 84 (207)
T 1vg8_A 5 KKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCC 84 (207)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSCSCCGGGTTCSEE
T ss_pred cCcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHhHHHHHhCCcEE
Confidence 35689999999999999999999999988888888888888888888888889999999999999999999999999999
Q ss_pred EEEEeCCChhhhhhHHHHHHHHhhhc-----CCCCEEEEEeCCCCCccccC-HHHHHHHH-HcCCeEEEeccCCCCChHH
Q 030504 90 IIMFDVTARLTYKNVPTWHRDLCRVC-----ENIPIVLCGNKVDVKNRQVK-AKQVTFHR-KKNLQYYEISAKSNYNFEK 162 (176)
Q Consensus 90 i~v~d~~~~~s~~~~~~~~~~~~~~~-----~~~p~liv~nK~Dl~~~~~~-~~~~~~~~-~~~~~~~~~S~~~~~~v~~ 162 (176)
++|||++++.+++.+..|+..+.... .+.|+++|+||+|+..+... .+...++. ..+++++++||++|.|+++
T Consensus 85 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~ 164 (207)
T 1vg8_A 85 VLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQ 164 (207)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSSCCCSCHHHHHHHHHHTTSCCEEECBTTTTBSHHH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhcccccCCCCcEEEEEECCCCcccccCHHHHHHHHHhcCCceEEEEeCCCCCCHHH
Confidence 99999999999999999988876654 47899999999999854443 34456666 5678999999999999999
Q ss_pred HHHHHHHHHhc
Q 030504 163 PFLYLARKLAG 173 (176)
Q Consensus 163 ~~~~l~~~i~~ 173 (176)
+|++|++.+.+
T Consensus 165 l~~~l~~~~~~ 175 (207)
T 1vg8_A 165 AFQTIARNALK 175 (207)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999998764
|
| >2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-35 Score=196.51 Aligned_cols=166 Identities=28% Similarity=0.508 Sum_probs=141.1
Q ss_pred CCCCCeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCcccccccccccccccc
Q 030504 8 TVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQ 87 (176)
Q Consensus 8 ~~~~~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~ 87 (176)
..+++.+||+++|.+|+|||||++++..+.+...+.++.+... ......++..+.+.+|||||++.+...+..+++.+|
T Consensus 13 ~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d 91 (187)
T 2a9k_A 13 QNSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGE 91 (187)
T ss_dssp ----CEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCTTCCEEE-EEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCS
T ss_pred CCCCCceEEEEECCCCCCHHHHHHHHhhCCCCCcCCCccceEE-EEEEEECCEEEEEEEEECCCCcccHHHHHHHhccCC
Confidence 3456789999999999999999999999888877777776544 344566777889999999999999999999999999
Q ss_pred EEEEEEeCCChhhhhhHHHHHHHHhhhcC--CCCEEEEEeCCCCCccc-c-CHHHHHHHHHcCCeEEEeccCCCCChHHH
Q 030504 88 CAIIMFDVTARLTYKNVPTWHRDLCRVCE--NIPIVLCGNKVDVKNRQ-V-KAKQVTFHRKKNLQYYEISAKSNYNFEKP 163 (176)
Q Consensus 88 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~p~liv~nK~Dl~~~~-~-~~~~~~~~~~~~~~~~~~S~~~~~~v~~~ 163 (176)
++++|||++++.+++.+..|+..+..... +.|+++|+||+|+.... . ..+...+++..+++++++||+++.|++++
T Consensus 92 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l 171 (187)
T 2a9k_A 92 GFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKV 171 (187)
T ss_dssp EEEEEEETTCHHHHHHHHHHHHHHHHHHCCTTCCEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHH
T ss_pred EEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccCHHHHHHHHHHcCCeEEEeCCCCCCCHHHH
Confidence 99999999999999999999888877654 89999999999997632 2 34566888889999999999999999999
Q ss_pred HHHHHHHHhcC
Q 030504 164 FLYLARKLAGS 174 (176)
Q Consensus 164 ~~~l~~~i~~~ 174 (176)
|++|++.+.++
T Consensus 172 ~~~l~~~i~~~ 182 (187)
T 2a9k_A 172 FFDLMREIRAR 182 (187)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 99999988653
|
| >3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-37 Score=205.51 Aligned_cols=163 Identities=26% Similarity=0.534 Sum_probs=146.2
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccccccccccEEEE
Q 030504 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAII 91 (176)
Q Consensus 12 ~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~ 91 (176)
..+||+++|.+|||||||++++..+.+...+.++.+.++.......++..+.+.+|||||++.+...+..+++.+|++++
T Consensus 22 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~ 101 (191)
T 3dz8_A 22 YMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQERYRTITTAYYRGAMGFIL 101 (191)
T ss_dssp ECEEEEEEESTTSSHHHHHHHHHHHTTCCCEEEEETTTEEEEEEEETTTTEEEEEECHHHHHHCHHHHHHHHTTCCEEEE
T ss_pred eeeEEEEECCCCcCHHHHHHHHhcCCCCcccCCCeeeEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHccCCEEEE
Confidence 57899999999999999999999999888888888888888888888888999999999999999999999999999999
Q ss_pred EEeCCChhhhhhHHHHHHHHhhhc-CCCCEEEEEeCCCCCccc--cCHHHHHHHHHcCCeEEEeccCCCCChHHHHHHHH
Q 030504 92 MFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNRQ--VKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLA 168 (176)
Q Consensus 92 v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~liv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l~ 168 (176)
|||++++.+++.+..|+..+.... ++.|+++|+||+|+.... ...+...+++..+++++++||++|.|++++|++|+
T Consensus 102 v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~ 181 (191)
T 3dz8_A 102 MYDITNEESFNAVQDWATQIKTYSWDNAQVILVGNKCDMEEERVVPTEKGQLLAEQLGFDFFEASAKENISVRQAFERLV 181 (191)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHHHH
T ss_pred EEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHH
Confidence 999999999999999999887765 689999999999997543 23445678888999999999999999999999999
Q ss_pred HHHhcC
Q 030504 169 RKLAGS 174 (176)
Q Consensus 169 ~~i~~~ 174 (176)
+.+.++
T Consensus 182 ~~i~~~ 187 (191)
T 3dz8_A 182 DAICDK 187 (191)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 988764
|
| >2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-35 Score=198.47 Aligned_cols=165 Identities=28% Similarity=0.511 Sum_probs=142.3
Q ss_pred CCCCCeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCcccccccccccccccc
Q 030504 8 TVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQ 87 (176)
Q Consensus 8 ~~~~~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~ 87 (176)
..+.+.+||+++|.+|||||||++++..+.+...+.++.+... ...+..++..+.+.+|||||++.+...+..++..+|
T Consensus 9 ~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~ 87 (206)
T 2bov_A 9 QNSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGE 87 (206)
T ss_dssp --CCCEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCTTCCEEE-EEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCS
T ss_pred CCCCceEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEE-EEEEEECCEEEEEEEEcCCChhhhHHHHHHHHhhCC
Confidence 4556789999999999999999999999988887888877554 345567778889999999999999999999999999
Q ss_pred EEEEEEeCCChhhhhhHHHHHHHHhhhc--CCCCEEEEEeCCCCCccc-c-CHHHHHHHHHcCCeEEEeccCCCCChHHH
Q 030504 88 CAIIMFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNRQ-V-KAKQVTFHRKKNLQYYEISAKSNYNFEKP 163 (176)
Q Consensus 88 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~liv~nK~Dl~~~~-~-~~~~~~~~~~~~~~~~~~S~~~~~~v~~~ 163 (176)
++++|||++++.+++.+..|+..+.... .+.|+++|+||+|+.... . ..+...++...+++++++||++|.|++++
T Consensus 88 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l 167 (206)
T 2bov_A 88 GFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKV 167 (206)
T ss_dssp EEEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEECTTTCTTHHHH
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccCccccccccHHHHHHHHHHhCCeEEEEeCCCCCCHHHH
Confidence 9999999999999999999998887765 389999999999997633 2 34566788888999999999999999999
Q ss_pred HHHHHHHHhc
Q 030504 164 FLYLARKLAG 173 (176)
Q Consensus 164 ~~~l~~~i~~ 173 (176)
|.+|++.+.+
T Consensus 168 ~~~l~~~i~~ 177 (206)
T 2bov_A 168 FFDLMREIRA 177 (206)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999998764
|
| >4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.3e-36 Score=199.14 Aligned_cols=163 Identities=20% Similarity=0.342 Sum_probs=131.3
Q ss_pred CCCCCeeEEEEEcCCCCcHHHHHHHHhcCCCCC-ccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccccccccc
Q 030504 8 TVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEK-KYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHG 86 (176)
Q Consensus 8 ~~~~~~~~i~i~G~~~~GKttl~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~ 86 (176)
+++....||+++|.+|||||||+++|..+.+.. .+.++.+...... +...+.+.+|||||++.+...+..+++.+
T Consensus 12 ~~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~~t~~~~~~~~----~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~ 87 (199)
T 4bas_A 12 GQSKTKLQVVMCGLDNSGKTTIINQVKPAQSSSKHITATVGYNVETF----EKGRVAFTVFDMGGAKKFRGLWETYYDNI 87 (199)
T ss_dssp ----CEEEEEEECCTTSCHHHHHHHHSCCC----CCCCCSSEEEEEE----EETTEEEEEEEECCSGGGGGGGGGGCTTC
T ss_pred cCCCCCcEEEEECCCCCCHHHHHHHHhcCCCcccccccccceeEEEE----EeCCEEEEEEECCCCHhHHHHHHHHHhcC
Confidence 455678999999999999999999999998887 7788888555443 34678899999999999999999999999
Q ss_pred cEEEEEEeCCChhhhhhHHHHHHHHhhhc---------CCCCEEEEEeCCCCCccccCHHHH------HHHHHcCCeEEE
Q 030504 87 QCAIIMFDVTARLTYKNVPTWHRDLCRVC---------ENIPIVLCGNKVDVKNRQVKAKQV------TFHRKKNLQYYE 151 (176)
Q Consensus 87 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~~---------~~~p~liv~nK~Dl~~~~~~~~~~------~~~~~~~~~~~~ 151 (176)
|++|+|||++++.+++.+..|+..+.... ++.|+++|+||+|+.......+.. .+++..++.+++
T Consensus 88 d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (199)
T 4bas_A 88 DAVIFVVDSSDHLRLCVVKSEIQAMLKHEDIRRELPGGGRVPFLFFANKMDAAGAKTAAELVEILDLTTLMGDHPFVIFA 167 (199)
T ss_dssp SEEEEEEETTCGGGHHHHHHHHHHHHTSHHHHSBCTTSCBCCEEEEEECTTSTTCCCHHHHHHHHTHHHHHTTSCEEEEE
T ss_pred CEEEEEEECCcHHHHHHHHHHHHHHHhChhhhhcccccCCCCEEEEEECcCCCCCCCHHHHHHHhcchhhccCCeeEEEE
Confidence 99999999999999999988888776542 289999999999998653322221 112557789999
Q ss_pred eccCCCCChHHHHHHHHHHHhcC
Q 030504 152 ISAKSNYNFEKPFLYLARKLAGS 174 (176)
Q Consensus 152 ~S~~~~~~v~~~~~~l~~~i~~~ 174 (176)
|||++|.|++++|++|++.+.++
T Consensus 168 ~Sa~~g~gv~~l~~~l~~~~~~~ 190 (199)
T 4bas_A 168 SNGLKGTGVHEGFSWLQETASRQ 190 (199)
T ss_dssp CBTTTTBTHHHHHHHHHHHHHHH
T ss_pred eeCCCccCHHHHHHHHHHHHHHH
Confidence 99999999999999999988654
|
| >3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-35 Score=198.83 Aligned_cols=165 Identities=27% Similarity=0.524 Sum_probs=142.9
Q ss_pred CCCCeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccccccccccE
Q 030504 9 VDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQC 88 (176)
Q Consensus 9 ~~~~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~ 88 (176)
.....+||+++|.+|+|||||++++..+.+...+.++.+.++....+..++..+.+.+|||||++.+...+..++..+|+
T Consensus 16 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 95 (213)
T 3cph_A 16 SYDSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRTITTAYYRGAMG 95 (213)
T ss_dssp ----CEEEEEECSTTSSHHHHHHHHHHCCCCCSSSCCCSCCEEEEEEEETTEEEEEEEECCTTGGGGTCCCHHHHTTCSE
T ss_pred CCCcceEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCCE
Confidence 33467999999999999999999999988887788888878877777788888999999999999999999999999999
Q ss_pred EEEEEeCCChhhhhhHHHHHHHHhhhc-CCCCEEEEEeCCCCCccccC-HHHHHHHHHcCCeEEEeccCCCCChHHHHHH
Q 030504 89 AIIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNRQVK-AKQVTFHRKKNLQYYEISAKSNYNFEKPFLY 166 (176)
Q Consensus 89 ~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~liv~nK~Dl~~~~~~-~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~ 166 (176)
+++|||++++.+++.+..|+..+.... .+.|+++|+||+|+..+... .+...++...+++++++||+++.|++++|.+
T Consensus 96 ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 175 (213)
T 3cph_A 96 IILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDMETRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFT 175 (213)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHTTTCSEEEEEEECTTCSSCCSCHHHHHHHHHHHTCCEEECBTTTTBSSHHHHHH
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCcccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHH
Confidence 999999999999999999988887664 47899999999999654443 3456778888999999999999999999999
Q ss_pred HHHHHhc
Q 030504 167 LARKLAG 173 (176)
Q Consensus 167 l~~~i~~ 173 (176)
|++.+.+
T Consensus 176 l~~~~~~ 182 (213)
T 3cph_A 176 LAKLIQE 182 (213)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9988764
|
| >1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-35 Score=194.97 Aligned_cols=165 Identities=27% Similarity=0.555 Sum_probs=128.2
Q ss_pred CCCeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEec-CcEEEEEEEeCCCccccccccccccccccE
Q 030504 10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTN-CGKIRFYCWDTAGQEKFGGLRDGYYIHGQC 88 (176)
Q Consensus 10 ~~~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~ 88 (176)
....+||+++|++|+|||||++++..+.+...+.++.+.+.....+..+ +..+.+.+|||||++.+...+..+++.+|+
T Consensus 5 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 84 (182)
T 1ky3_A 5 KKNILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAFYRGADC 84 (182)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC----------CCSTTCCE
T ss_pred cCceEEEEEECCCCCCHHHHHHHHHhCcCCcccCCccceEEEEEEEEEcCCcEEEEEEEECCCChHhhhhhHHHhhcCCE
Confidence 4568999999999999999999999998888888888877777777666 567899999999999999999999999999
Q ss_pred EEEEEeCCChhhhhhHHHHHHHHhhhc-----CCCCEEEEEeCCCCCcc-c-c-CHHHHHHHH-HcCCeEEEeccCCCCC
Q 030504 89 AIIMFDVTARLTYKNVPTWHRDLCRVC-----ENIPIVLCGNKVDVKNR-Q-V-KAKQVTFHR-KKNLQYYEISAKSNYN 159 (176)
Q Consensus 89 ~i~v~d~~~~~s~~~~~~~~~~~~~~~-----~~~p~liv~nK~Dl~~~-~-~-~~~~~~~~~-~~~~~~~~~S~~~~~~ 159 (176)
+++|||++++.+++.+..|+..+.... .+.|+++|+||+|+... . . ..+...+++ ..+++++++||++|.|
T Consensus 85 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~g 164 (182)
T 1ky3_A 85 CVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKIVSEKSAQELAKSLGDIPLFLTSAKNAIN 164 (182)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGCCSCHHHHHHHHHHTTSCCEEEEBTTTTBS
T ss_pred EEEEEECCChHHHHHHHHHHHHHHHHhcccCcCCCcEEEEEECCccccccccCCHHHHHHHHHhcCCCeEEEEecCCCCC
Confidence 999999999999999999988876653 58899999999999542 2 2 334556666 4678999999999999
Q ss_pred hHHHHHHHHHHHhcC
Q 030504 160 FEKPFLYLARKLAGS 174 (176)
Q Consensus 160 v~~~~~~l~~~i~~~ 174 (176)
++++|+++++.+.++
T Consensus 165 i~~l~~~l~~~~~~~ 179 (182)
T 1ky3_A 165 VDTAFEEIARSALQQ 179 (182)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999999988654
|
| >2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=100.00 E-value=5.3e-35 Score=196.80 Aligned_cols=163 Identities=28% Similarity=0.451 Sum_probs=133.9
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccccccccccEEE
Q 030504 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (176)
Q Consensus 11 ~~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 90 (176)
+..+||+++|.+|||||||++++..+.+...+.++.+..+.. ....++..+.+.+|||||++.+...+..++..+|+++
T Consensus 23 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~-~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 101 (207)
T 2fv8_A 23 MIRKKLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYVA-DIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVIL 101 (207)
T ss_dssp SEEEEEEEEECTTSSHHHHHHHHHHSSCC-------CCEEEE-EEEETTEEEEEEEEECTTCTTCTTTGGGGCTTCCEEE
T ss_pred ccCcEEEEECcCCCCHHHHHHHHhcCCCCCcCCCcccceEEE-EEEECCEEEEEEEEECCCcHHHHHHHHhhcCCCCEEE
Confidence 467899999999999999999999998887777777655543 3566777889999999999999999999999999999
Q ss_pred EEEeCCChhhhhhH-HHHHHHHhhhcCCCCEEEEEeCCCCCccc-------------c-CHHHHHHHHHcCC-eEEEecc
Q 030504 91 IMFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGNKVDVKNRQ-------------V-KAKQVTFHRKKNL-QYYEISA 154 (176)
Q Consensus 91 ~v~d~~~~~s~~~~-~~~~~~~~~~~~~~p~liv~nK~Dl~~~~-------------~-~~~~~~~~~~~~~-~~~~~S~ 154 (176)
+|||++++.+++.+ ..|+..+....++.|+++|+||+|+.... . ..+...++...++ .++++||
T Consensus 102 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~SA 181 (207)
T 2fv8_A 102 MCFSVDSPDSLENIPEKWVPEVKHFCPNVPIILVANKKDLRSDEHVRTELARMKQEPVRTDDGRAMAVRIQAYDYLECSA 181 (207)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCT
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEchhhhccccchhhhhhcccCCCCHHHHHHHHHhcCCCEEEEeeC
Confidence 99999999999988 57888887777799999999999997531 1 2244567777777 8999999
Q ss_pred CCCCChHHHHHHHHHHHhcC
Q 030504 155 KSNYNFEKPFLYLARKLAGS 174 (176)
Q Consensus 155 ~~~~~v~~~~~~l~~~i~~~ 174 (176)
++|.|++++|++|++.+.+.
T Consensus 182 ~~g~gi~el~~~l~~~i~~~ 201 (207)
T 2fv8_A 182 KTKEGVREVFETATRAALQK 201 (207)
T ss_dssp TTCTTHHHHHHHHHHHHHSC
T ss_pred CCCCCHHHHHHHHHHHHHHH
Confidence 99999999999999988754
|
| >3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=100.00 E-value=6e-35 Score=195.90 Aligned_cols=163 Identities=31% Similarity=0.489 Sum_probs=140.1
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcE-----------------------------
Q 030504 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGK----------------------------- 61 (176)
Q Consensus 11 ~~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------------- 61 (176)
...+||+++|.+|+|||||+++++.+.+...+.++.+.++....+..++..
T Consensus 5 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (208)
T 3clv_A 5 KSSYKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEKNNNINSINDDNNVIITNQHN 84 (208)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSCEEEEEEEETTC-------------------------------
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhCcCCCCcCccccceeEEEEEEecCccccccccccccccccccccccccccccccc
Confidence 357999999999999999999999998888888888877777766665544
Q ss_pred --------EEEEEEeCCCccccccccccccccccEEEEEEeCCChhhhhhHHHHHHHHhhhcCCCCEEEEEeCCCCCccc
Q 030504 62 --------IRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQ 133 (176)
Q Consensus 62 --------~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~~~~ 133 (176)
+.+.+|||||++.+...+..+++.+|++++|+|++++.+++.+..|+..+.... +.|+++|+||+|+....
T Consensus 85 ~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~-~~piilv~NK~D~~~~~ 163 (208)
T 3clv_A 85 NYNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLKISS-NYIIILVANKIDKNKFQ 163 (208)
T ss_dssp CCCTTTCEEEEEEEECTTGGGCTTTHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHS-CCEEEEEEECTTCC-CC
T ss_pred cccCccceeEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhhC-CCcEEEEEECCCccccc
Confidence 889999999999999999999999999999999999999999999988887654 49999999999944333
Q ss_pred c-CHHHHHHHHHcCCeEEEeccCCCCChHHHHHHHHHHHhcC
Q 030504 134 V-KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGS 174 (176)
Q Consensus 134 ~-~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l~~~i~~~ 174 (176)
. ..+...+++..+++++++||+++.|++++|++|++.+.++
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~ 205 (208)
T 3clv_A 164 VDILEVQKYAQDNNLLFIQTSAKTGTNIKNIFYMLAEEIYKN 205 (208)
T ss_dssp SCHHHHHHHHHHTTCEEEEECTTTCTTHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHHHHHHHHh
Confidence 3 3456788888999999999999999999999999987653
|
| >4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.6e-35 Score=193.11 Aligned_cols=162 Identities=27% Similarity=0.517 Sum_probs=138.6
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccccccccccEEE
Q 030504 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (176)
Q Consensus 11 ~~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 90 (176)
.+.+||+++|.+|||||||++++..+.+...+.++.+ +........++..+.+.+|||||++.+...+..++..+|+++
T Consensus 2 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i 80 (189)
T 4dsu_A 2 STEYKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFL 80 (189)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHHSSCCCCCCTTCC-EEEEEEEEETTEEEEEEEEECCCC---CTTHHHHHHHCSEEE
T ss_pred CcEEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCch-heEEEEEEECCcEEEEEEEECCCcHHHHHHHHHHHhcCCEEE
Confidence 4679999999999999999999998888777777775 444455667788889999999999999999999999999999
Q ss_pred EEEeCCChhhhhhHHHHHHHHhhhc--CCCCEEEEEeCCCCCccccC-HHHHHHHHHcCCeEEEeccCCCCChHHHHHHH
Q 030504 91 IMFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNRQVK-AKQVTFHRKKNLQYYEISAKSNYNFEKPFLYL 167 (176)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~liv~nK~Dl~~~~~~-~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l 167 (176)
+|||++++.+++.+..|+..+.... .+.|+++|+||+|+..+... .....+++..+++++++||++|.|++++|++|
T Consensus 81 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l 160 (189)
T 4dsu_A 81 CVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLPSRTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTL 160 (189)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTSSSCSSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccCcccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHH
Confidence 9999999999999999988887653 58999999999999865544 44568888899999999999999999999999
Q ss_pred HHHHhc
Q 030504 168 ARKLAG 173 (176)
Q Consensus 168 ~~~i~~ 173 (176)
++.+.+
T Consensus 161 ~~~~~~ 166 (189)
T 4dsu_A 161 VREIRK 166 (189)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 998764
|
| >1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-35 Score=191.72 Aligned_cols=161 Identities=28% Similarity=0.507 Sum_probs=139.3
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccccccccccEEEE
Q 030504 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAII 91 (176)
Q Consensus 12 ~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~ 91 (176)
+.+||+++|++|+|||||++++..+.+...+.++.+... ......++..+.+.+|||||++.+...+..+++.+|++++
T Consensus 2 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~~~~i~ 80 (167)
T 1kao_A 2 REYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDFY-RKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFIL 80 (167)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEE
T ss_pred cEEEEEEECCCCCCHHHHHHHHHcCCCcccCCCCcceeE-EEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEEEE
Confidence 579999999999999999999999988877777776433 5556677888899999999999999999999999999999
Q ss_pred EEeCCChhhhhhHHHHHHHHhhhc--CCCCEEEEEeCCCCCccc-c-CHHHHHHHHHcCCeEEEeccCCCCChHHHHHHH
Q 030504 92 MFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNRQ-V-KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYL 167 (176)
Q Consensus 92 v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~liv~nK~Dl~~~~-~-~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l 167 (176)
|||++++.+++.+..|+..+.... .+.|+++|+||+|+.... . ..+...+++..+++++++||++|.|++++|+++
T Consensus 81 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l 160 (167)
T 1kao_A 81 VYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESEREVSSSEGRALAEEWGCPFMETSAKSKTMVDELFAEI 160 (167)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTSCEEEECTTCHHHHHHHHHHH
T ss_pred EEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcccccccCCHHHHHHHHHHhCCCEEEecCCCCcCHHHHHHHH
Confidence 999999999999998888877654 589999999999987532 2 334567888889999999999999999999999
Q ss_pred HHHHhc
Q 030504 168 ARKLAG 173 (176)
Q Consensus 168 ~~~i~~ 173 (176)
++.+.+
T Consensus 161 ~~~~~~ 166 (167)
T 1kao_A 161 VRQMNY 166 (167)
T ss_dssp HHHHHH
T ss_pred HHHHhh
Confidence 998764
|
| >3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.1e-35 Score=190.27 Aligned_cols=160 Identities=19% Similarity=0.251 Sum_probs=115.6
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccccccccccEEEEE
Q 030504 13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIM 92 (176)
Q Consensus 13 ~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 92 (176)
.+||+++|.+|||||||++++.+.... ...++.+.++ ......++..+.+.+||++|++.+...+..+++.+|++++|
T Consensus 2 ~~ki~~vG~~~~GKSsli~~l~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v 79 (166)
T 3q72_A 2 VYKVLLLGAPGVGKSALARIFGGVEDG-PEAEAAGHTY-DRSIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIV 79 (166)
T ss_dssp CCEEEEEESTTSSHHHHHHHHCCC-----------CEE-EEEEEETTEEEEEEEEECC---------------CCEEEEE
T ss_pred eEEEEEECCCCCCHHHHHHHHcCcccc-CCCCccccce-EEEEEECCEEEEEEEEECCCCccchhhhhhhhhhCCEEEEE
Confidence 589999999999999999997754443 4455666555 34556788889999999999999999999999999999999
Q ss_pred EeCCChhhhhhHHHHHHHHhhhc--CCCCEEEEEeCCCCCccc-c-CHHHHHHHHHcCCeEEEeccCCCCChHHHHHHHH
Q 030504 93 FDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNRQ-V-KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLA 168 (176)
Q Consensus 93 ~d~~~~~s~~~~~~~~~~~~~~~--~~~p~liv~nK~Dl~~~~-~-~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l~ 168 (176)
||++++.+++.+..|+..+.... ++.|+++|+||+|+.+.. . ..+...++...+++++++||++|.|++++|++++
T Consensus 80 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~ 159 (166)
T 3q72_A 80 YSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVV 159 (166)
T ss_dssp EETTCHHHHHHHHHHHHHHHHCC---CCCEEEEEECTTCCSSCCSCHHHHHHHHHHTTCEEEECBGGGTBSHHHHHHHHH
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccccccccccCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHHHH
Confidence 99999999999999988887653 589999999999997533 2 3345678888899999999999999999999999
Q ss_pred HHHhcC
Q 030504 169 RKLAGS 174 (176)
Q Consensus 169 ~~i~~~ 174 (176)
+.+.++
T Consensus 160 ~~~~~~ 165 (166)
T 3q72_A 160 RQIRLR 165 (166)
T ss_dssp HHHHHH
T ss_pred HHHHhc
Confidence 988754
|
| >2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-35 Score=193.06 Aligned_cols=162 Identities=20% Similarity=0.292 Sum_probs=127.4
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccc--cccccccccccccEE
Q 030504 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK--FGGLRDGYYIHGQCA 89 (176)
Q Consensus 12 ~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~--~~~~~~~~~~~~~~~ 89 (176)
..+||+++|++|||||||++++..+.+... .++.|.+.....+..++..+.+.+|||||++. +......+++.+|++
T Consensus 3 ~~~ki~i~G~~~vGKSsl~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~~~ 81 (175)
T 2nzj_A 3 ALYRVVLLGDPGVGKTSLASLFAGKQERDL-HEQLGEDVYERTLTVDGEDTTLVVVDTWEAEKLDKSWSQESCLQGGSAY 81 (175)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHCC------CCCSSSSEEEEEEEETTEEEEEEEECCC-------CHHHHHTTTSCSEE
T ss_pred eEEEEEEECCCCccHHHHHHHHhcCCCccc-cCccccceeEEEEEECCEEEEEEEEecCCCCccchhhhHHhhcccCCEE
Confidence 579999999999999999999888776544 34566666666777788889999999999987 566677888999999
Q ss_pred EEEEeCCChhhhhhHHHHHHHHhhh--cCCCCEEEEEeCCCCCcc-cc-CHHHHHHHHHcCCeEEEeccCCCCChHHHHH
Q 030504 90 IIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNR-QV-KAKQVTFHRKKNLQYYEISAKSNYNFEKPFL 165 (176)
Q Consensus 90 i~v~d~~~~~s~~~~~~~~~~~~~~--~~~~p~liv~nK~Dl~~~-~~-~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~ 165 (176)
++|||++++.+++.+..|+..+... .++.|+++|+||+|+... .. ..+...++...+++++++||++|.|++++|+
T Consensus 82 i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~ 161 (175)
T 2nzj_A 82 VIVYSIADRGSFESASELRIQLRRTHQADHVPIILVGNKADLARCREVSVEEGRACAVVFDCKFIETSATLQHNVAELFE 161 (175)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHCC----CCEEEEEECTTCTTTCCSCHHHHHHHHHHHTSEEEECBTTTTBSHHHHHH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhhccCCCCEEEEEEChhhccccccCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHH
Confidence 9999999999999999998877764 258999999999999753 23 2345577788899999999999999999999
Q ss_pred HHHHHHhcC
Q 030504 166 YLARKLAGS 174 (176)
Q Consensus 166 ~l~~~i~~~ 174 (176)
+|++.+.++
T Consensus 162 ~l~~~~~~~ 170 (175)
T 2nzj_A 162 GVVRQLRLR 170 (175)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 999987643
|
| >2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ... | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-34 Score=187.43 Aligned_cols=161 Identities=28% Similarity=0.514 Sum_probs=139.3
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccccccccccEEEE
Q 030504 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAII 91 (176)
Q Consensus 12 ~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~ 91 (176)
+.+||+++|.+|+|||||++++..+.+...+.++.+... ......++..+.+.+||+||++.+...+..++..+|++++
T Consensus 2 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~ 80 (166)
T 2ce2_X 2 TEYKLVVVGAGGVGKSALTIQLIQNHFVDECDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLC 80 (166)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCCSSCCHHHHHHHHHCSEEEE
T ss_pred ceeEEEEECCCCCCHHHHHHHHHhCcCccccCCccceEE-EEEEEECCEEEEEEEEECCCchhhhHHHHHhhccCCEEEE
Confidence 468999999999999999999998888777777766433 4455667788899999999999999999999999999999
Q ss_pred EEeCCChhhhhhHHHHHHHHhhhcC--CCCEEEEEeCCCCCcccc-CHHHHHHHHHcCCeEEEeccCCCCChHHHHHHHH
Q 030504 92 MFDVTARLTYKNVPTWHRDLCRVCE--NIPIVLCGNKVDVKNRQV-KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLA 168 (176)
Q Consensus 92 v~d~~~~~s~~~~~~~~~~~~~~~~--~~p~liv~nK~Dl~~~~~-~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l~ 168 (176)
|||++++.+++.+..|+..+..... +.|+++|+||+|+..+.. ..+...+++..+++++++||+++.|++++|++++
T Consensus 81 v~d~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~ 160 (166)
T 2ce2_X 81 VFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLV 160 (166)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSCCCSCHHHHHHHHHHHTCCEEEECTTTCTTHHHHHHHHH
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEchhhhhcccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHH
Confidence 9999999999999999888877653 899999999999976443 3455678888899999999999999999999999
Q ss_pred HHHhc
Q 030504 169 RKLAG 173 (176)
Q Consensus 169 ~~i~~ 173 (176)
+.+.+
T Consensus 161 ~~~~~ 165 (166)
T 2ce2_X 161 REIRQ 165 (166)
T ss_dssp HHHHT
T ss_pred HHHHh
Confidence 98865
|
| >3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C | Back alignment and structure |
|---|
Probab=100.00 E-value=6.5e-36 Score=197.24 Aligned_cols=162 Identities=28% Similarity=0.450 Sum_probs=124.7
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccccccccccEEE
Q 030504 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (176)
Q Consensus 11 ~~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 90 (176)
...+||+++|.+|+|||||++++..+.+...+.++.+..+. .....++..+.+.+|||||++.+...+..+++++|+++
T Consensus 6 ~~~~ki~v~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 84 (182)
T 3bwd_D 6 SRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFS-ANVVVNGATVNLGLWDTAGQEDYNRLRPLSYRGADVFI 84 (182)
T ss_dssp -CCCEEEEECSTTSSHHHHHHHHHHSCCC----------CB-CCCC-------CEEECCCC-CTTTTTGGGGGTTCSEEE
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCeeeeeEE-EEEEECCEEEEEEEEECCCChhhhhhHHhhccCCCEEE
Confidence 46799999999999999999999999887777777764432 23344556788899999999999999999999999999
Q ss_pred EEEeCCChhhhhhHH-HHHHHHhhhcCCCCEEEEEeCCCCCccc------------cCHHHHHHHHHcCC-eEEEeccCC
Q 030504 91 IMFDVTARLTYKNVP-TWHRDLCRVCENIPIVLCGNKVDVKNRQ------------VKAKQVTFHRKKNL-QYYEISAKS 156 (176)
Q Consensus 91 ~v~d~~~~~s~~~~~-~~~~~~~~~~~~~p~liv~nK~Dl~~~~------------~~~~~~~~~~~~~~-~~~~~S~~~ 156 (176)
+|||++++.+++.+. .|+..+....++.|+++|+||+|+.... ...+...+++..++ +++++||++
T Consensus 85 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~ 164 (182)
T 3bwd_D 85 LAFSLISKASYENVSKKWIPELKHYAPGVPIVLVGTKLDLRDDKQFFIDHPGAVPITTVQGEELKKLIGAPAYIECSSKS 164 (182)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECHHHHTCHHHHHHC--CCCCCHHHHHHHHHHHTCSEEEECCTTT
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEechhhhcCcccccccccCCCCCHHHHHHHHHHcCCCEEEEEECCC
Confidence 999999999999987 6888888777789999999999986532 23345677888886 999999999
Q ss_pred CCChHHHHHHHHHHHhc
Q 030504 157 NYNFEKPFLYLARKLAG 173 (176)
Q Consensus 157 ~~~v~~~~~~l~~~i~~ 173 (176)
|.|++++|+++++.+.+
T Consensus 165 ~~gi~~l~~~l~~~i~~ 181 (182)
T 3bwd_D 165 QENVKGVFDAAIRVVLQ 181 (182)
T ss_dssp CTTHHHHHHHHHHHHSC
T ss_pred CCCHHHHHHHHHHHHhc
Confidence 99999999999998864
|
| >2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A | Back alignment and structure |
|---|
Probab=100.00 E-value=6e-35 Score=192.06 Aligned_cols=156 Identities=21% Similarity=0.384 Sum_probs=129.2
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccccccccccEEE
Q 030504 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (176)
Q Consensus 11 ~~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 90 (176)
++.+||+++|.+|||||||++++..+.+.. +.++.+..+ ...+..++..+.+.+|||+|+++ ..+++++|+++
T Consensus 5 ~~~~ki~~vG~~~vGKTsli~~l~~~~~~~-~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~-----~~~~~~~d~~i 77 (178)
T 2iwr_A 5 IPELRLGVLGDARSGKSSLIHRFLTGSYQV-LEKTESEQY-KKEMLVDGQTHLVLIREEAGAPD-----AKFSGWADAVI 77 (178)
T ss_dssp CCEEEEEEECCGGGCHHHHHHHHHHSCCCC-CSSCSSSEE-EEEEEETTEEEEEEEEECSSSCC-----HHHHHHCSEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCC-cCCCcceeE-EEEEEECCEEEEEEEEECCCCch-----hHHHHhCCEEE
Confidence 578999999999999999999999998876 677777444 45566777889999999999886 46778899999
Q ss_pred EEEeCCChhhhhhHHHHHHHHhhhc----CCCCEEEEEeCCCCCc---ccc-CHHHHHHHHHc-CCeEEEeccCCCCChH
Q 030504 91 IMFDVTARLTYKNVPTWHRDLCRVC----ENIPIVLCGNKVDVKN---RQV-KAKQVTFHRKK-NLQYYEISAKSNYNFE 161 (176)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~~----~~~p~liv~nK~Dl~~---~~~-~~~~~~~~~~~-~~~~~~~S~~~~~~v~ 161 (176)
+|||++++.+++.+..|+..+.... ++.|+++|+||+|+.. +.. ..+...+++.. +++++++||++|.|++
T Consensus 78 lv~D~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 157 (178)
T 2iwr_A 78 FVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPRVVGDARARALXADMKRCSYYETXATYGLNVD 157 (178)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHHCSSSCCCEEEEEEECTTCBTTBCCCSCHHHHHHHHHHHSSEEEEEEBTTTTBTHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccccCcCCHHHHHHHHHhhcCCeEEEEeccccCCHH
Confidence 9999999999999998776665442 5789999999999942 223 33455677665 6899999999999999
Q ss_pred HHHHHHHHHHhc
Q 030504 162 KPFLYLARKLAG 173 (176)
Q Consensus 162 ~~~~~l~~~i~~ 173 (176)
++|+++++.+.+
T Consensus 158 ~lf~~l~~~~~~ 169 (178)
T 2iwr_A 158 RVFQEVAQKVVT 169 (178)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999998764
|
| >2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-35 Score=200.96 Aligned_cols=163 Identities=33% Similarity=0.536 Sum_probs=141.4
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCc----------EEEEEEEeCCCccccccccc
Q 030504 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG----------KIRFYCWDTAGQEKFGGLRD 80 (176)
Q Consensus 11 ~~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~D~~g~~~~~~~~~ 80 (176)
...+||+++|.+|||||||+++++.+.+...+.++.+.++....+..++. .+.+.+|||||++.+...+.
T Consensus 23 ~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~ 102 (217)
T 2f7s_A 23 DYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERFRSLTT 102 (217)
T ss_dssp SEEEEEEEESCTTSSHHHHHHHHHCSCCCCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHHHHHHHHH
T ss_pred ceeEEEEEECcCCCCHHHHHHHHhcCCCCcCCCCceeEEEEEEEEEECCccccccccCceeEEEEEEECCCcHhHHhHHH
Confidence 35699999999999999999999998888888888887777766666655 78999999999999999999
Q ss_pred cccccccEEEEEEeCCChhhhhhHHHHHHHHhhhc--CCCCEEEEEeCCCCCccc-c-CHHHHHHHHHcCCeEEEeccCC
Q 030504 81 GYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNRQ-V-KAKQVTFHRKKNLQYYEISAKS 156 (176)
Q Consensus 81 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~liv~nK~Dl~~~~-~-~~~~~~~~~~~~~~~~~~S~~~ 156 (176)
.+++.+|++++|||++++.+++.+..|+..+.... .+.|+++|+||+|+.... . ..+...+++..+++++++||++
T Consensus 103 ~~~~~~d~iilV~D~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~ 182 (217)
T 2f7s_A 103 AFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLPDQREVNERQARELADKYGIPYFETSAAT 182 (217)
T ss_dssp HHHTTCCEEEEEEETTCHHHHHHHHHHHHTCCCCCTTTCCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCCEEEEBTTT
T ss_pred HHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCCEEEEEECCccccccccCHHHHHHHHHHCCCcEEEEECCC
Confidence 99999999999999999999999998888776543 589999999999997633 2 3456688888999999999999
Q ss_pred CCChHHHHHHHHHHHhc
Q 030504 157 NYNFEKPFLYLARKLAG 173 (176)
Q Consensus 157 ~~~v~~~~~~l~~~i~~ 173 (176)
+.|++++|++|++.+.+
T Consensus 183 g~gi~~l~~~l~~~i~~ 199 (217)
T 2f7s_A 183 GQNVEKAVETLLDLIMK 199 (217)
T ss_dssp TBTHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHH
Confidence 99999999999998764
|
| >2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=100.00 E-value=7.4e-35 Score=194.52 Aligned_cols=162 Identities=28% Similarity=0.407 Sum_probs=139.6
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccccccccccEEE
Q 030504 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (176)
Q Consensus 11 ~~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 90 (176)
.+.+||+++|.+|||||||++++..+.+...+.++.+..+ ......++..+.+.+|||||++. ...+..+++.+|+++
T Consensus 26 ~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~-~~~~~~~~~~~d~ii 103 (196)
T 2atv_A 26 SAEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTY-RHQATIDDEVVSMEILDTAGQED-TIQREGHMRWGEGFV 103 (196)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCCCC-CHHHHHHHHHCSEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCcccCCCCCceE-EEEEEECCEEEEEEEEECCCCCc-ccchhhhhccCCEEE
Confidence 5679999999999999999999999998888888887554 44466777889999999999988 778888899999999
Q ss_pred EEEeCCChhhhhhHHHHHHHHhhhc--CCCCEEEEEeCCCCCcc-cc-CHHHHHHHHHcCCeEEEeccCCCC-ChHHHHH
Q 030504 91 IMFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNR-QV-KAKQVTFHRKKNLQYYEISAKSNY-NFEKPFL 165 (176)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~liv~nK~Dl~~~-~~-~~~~~~~~~~~~~~~~~~S~~~~~-~v~~~~~ 165 (176)
+|||++++.+++.+..|+..+.... .+.|+++|+||+|+... .. ..+...+++..+++++++||++|. |++++|+
T Consensus 104 lv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~~gi~~l~~ 183 (196)
T 2atv_A 104 LVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDHSRQVSTEEGEKLATELACAFYECSACTGEGNITEIFY 183 (196)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHHTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTSEEEECCTTTCTTCHHHHHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhhCCCCCcEEEEEECcccccccccCHHHHHHHHHHhCCeEEEECCCcCCcCHHHHHH
Confidence 9999999999999999988887653 58999999999999763 22 345667888889999999999999 9999999
Q ss_pred HHHHHHhcC
Q 030504 166 YLARKLAGS 174 (176)
Q Consensus 166 ~l~~~i~~~ 174 (176)
+|++.+.++
T Consensus 184 ~l~~~i~~~ 192 (196)
T 2atv_A 184 ELCREVRRR 192 (196)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhh
Confidence 999988754
|
| >4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.3e-35 Score=198.62 Aligned_cols=167 Identities=44% Similarity=0.805 Sum_probs=141.2
Q ss_pred CCCCeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecC-cEEEEEEEeCCCcccccccccccccccc
Q 030504 9 VDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNC-GKIRFYCWDTAGQEKFGGLRDGYYIHGQ 87 (176)
Q Consensus 9 ~~~~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~D~~g~~~~~~~~~~~~~~~~ 87 (176)
.....+||+++|.+|||||||+++++.+.+...+.++.+.+.......... ..+.+.+|||||++.+...+..++..+|
T Consensus 7 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d 86 (218)
T 4djt_A 7 RRELTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQEKKAVLKDVYYIGAS 86 (218)
T ss_dssp ---CEEEEEEECCTTSSHHHHHCBCTTCSTTCEEETTTTEEEEEEEEEBTTSCEEEEEEEEECSGGGTSCCCHHHHTTCS
T ss_pred cccCccEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeeEEEEEEeCCCcEEEEEEEecCCchhhchHHHHHhhcCC
Confidence 345689999999999999999999998888888888888777777665543 4489999999999999999999999999
Q ss_pred EEEEEEeCCChhhhhhHHHHHHHHhhhcC-CCCEEEEEeCCCCCcc-ccC-HHHHHHHHHcCCeEEEeccCCCCChHHHH
Q 030504 88 CAIIMFDVTARLTYKNVPTWHRDLCRVCE-NIPIVLCGNKVDVKNR-QVK-AKQVTFHRKKNLQYYEISAKSNYNFEKPF 164 (176)
Q Consensus 88 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~p~liv~nK~Dl~~~-~~~-~~~~~~~~~~~~~~~~~S~~~~~~v~~~~ 164 (176)
++++|||++++.+++.+..|+..+..... +.|+++|+||+|+... ... .....++...+++++++||++|.|++++|
T Consensus 87 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~ 166 (218)
T 4djt_A 87 GAILFFDVTSRITCQNLARWVKEFQAVVGNEAPIVVCANKIDIKNRQKISKKLVMEVLKGKNYEYFEISAKTAHNFGLPF 166 (218)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHHCSSSCEEEEEECTTCC----CCHHHHHHHTTTCCCEEEEEBTTTTBTTTHHH
T ss_pred EEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCcEEEEecCCCCCHHHHH
Confidence 99999999999999999999988877653 5899999999999764 333 33457777889999999999999999999
Q ss_pred HHHHHHHhcCC
Q 030504 165 LYLARKLAGST 175 (176)
Q Consensus 165 ~~l~~~i~~~~ 175 (176)
.+|++.+.+.+
T Consensus 167 ~~l~~~~~~~~ 177 (218)
T 4djt_A 167 LHLARIFTGRP 177 (218)
T ss_dssp HHHHHHHHCCT
T ss_pred HHHHHHHhccc
Confidence 99999987754
|
| >3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-34 Score=190.96 Aligned_cols=165 Identities=27% Similarity=0.499 Sum_probs=130.2
Q ss_pred CCCCeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccccccccccE
Q 030504 9 VDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQC 88 (176)
Q Consensus 9 ~~~~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~ 88 (176)
..++.+||+++|.+|||||||++++..+.+...+.++.+... ......++..+.+.+|||||++.+...+..++..+|+
T Consensus 17 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 95 (190)
T 3con_A 17 QGMTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEG 95 (190)
T ss_dssp --CEEEEEEEECSTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCC-----------CTTCSE
T ss_pred cccceeEEEEECcCCCCHHHHHHHHHcCCCccccCCccceEE-EEEEEECCEEEEEEEEECCChHHHHHHHHHhhCcCCE
Confidence 345789999999999999999999998888777777765443 3455667778899999999999999999999999999
Q ss_pred EEEEEeCCChhhhhhHHHHHHHHhhhc--CCCCEEEEEeCCCCCcccc-CHHHHHHHHHcCCeEEEeccCCCCChHHHHH
Q 030504 89 AIIMFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNRQV-KAKQVTFHRKKNLQYYEISAKSNYNFEKPFL 165 (176)
Q Consensus 89 ~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~liv~nK~Dl~~~~~-~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~ 165 (176)
+++|||++++.+++.+..|+..+.... .+.|+++|+||+|+..+.. ..+..++++..+++++++||+++.|++++|+
T Consensus 96 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 175 (190)
T 3con_A 96 FLCVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDLPTRTVDTKQAHELAKSYGIPFIETSAKTRQGVEDAFY 175 (190)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSCCCSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHH
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCcCCcccCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHH
Confidence 999999999999999998988887654 3899999999999976443 3456688888899999999999999999999
Q ss_pred HHHHHHhcC
Q 030504 166 YLARKLAGS 174 (176)
Q Consensus 166 ~l~~~i~~~ 174 (176)
+|++.+.+.
T Consensus 176 ~l~~~~~~~ 184 (190)
T 3con_A 176 TLVREIRQY 184 (190)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999987653
|
| >3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.4e-37 Score=205.76 Aligned_cols=165 Identities=30% Similarity=0.556 Sum_probs=138.1
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccccccccccEEE
Q 030504 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (176)
Q Consensus 11 ~~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 90 (176)
...+||+++|.+|||||||++++..+.+...+.++.+.+.....+..++..+.+.+|||||++.+...+..+++.+|+++
T Consensus 31 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 110 (199)
T 3l0i_B 31 DYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII 110 (199)
T ss_dssp SEEEEEEEECCTTSCCTTTTTSSBCCCCCCHHHHHHCCSEEEEEEEETTEEEEEEEECCTTCTTCCCCSCC--CCCSEEE
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCCCCCCcCCcccceEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhhcCCEEE
Confidence 45799999999999999999999988888888888888888888888888899999999999999999999999999999
Q ss_pred EEEeCCChhhhhhHHHHHHHHhhhc-CCCCEEEEEeCCCCCcccc--CHHHHHHHHHcCCeEEEeccCCCCChHHHHHHH
Q 030504 91 IMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNRQV--KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYL 167 (176)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~liv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l 167 (176)
+|||++++.+++.+..|+..+.... .+.|+++|+||+|+..... ..+...++...+++++++||+++.|++++|++|
T Consensus 111 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~vSA~~g~gv~~l~~~l 190 (199)
T 3l0i_B 111 VVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTM 190 (199)
T ss_dssp ECC-CCCSHHHHHHHHHHHHHHSCC-CCSEEEEC-CCSSCC--CCCCSCC-CHHHHTTTCCBCCCCC---HHHHHHHHHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhccCCCCEEEEEECccCCccccCCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHH
Confidence 9999999999999999998887654 4789999999999975432 235668888899999999999999999999999
Q ss_pred HHHHhcCC
Q 030504 168 ARKLAGST 175 (176)
Q Consensus 168 ~~~i~~~~ 175 (176)
++.+.++.
T Consensus 191 ~~~l~~~~ 198 (199)
T 3l0i_B 191 AAEIKKRM 198 (199)
T ss_dssp TTTTTTTC
T ss_pred HHHHHHhc
Confidence 99887653
|
| >2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C | Back alignment and structure |
|---|
Probab=100.00 E-value=4.9e-36 Score=201.71 Aligned_cols=163 Identities=25% Similarity=0.396 Sum_probs=105.8
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHhcC--CCCCccccceeEEEeEEEEEecCc--EEEEEEEeCCCccccccccccccccc
Q 030504 11 YPSFKLVIVGDGGTGKTTFVKRHLTG--EFEKKYEPTIGVEVHPLDFFTNCG--KIRFYCWDTAGQEKFGGLRDGYYIHG 86 (176)
Q Consensus 11 ~~~~~i~i~G~~~~GKttl~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~ 86 (176)
...+||+++|.+|+|||||++++..+ .+...+.++.+.+.....+..++. .+.+.+|||||++.+...+..+++.+
T Consensus 18 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~ 97 (208)
T 2yc2_C 18 TLRCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTAGSDLYKEQISQYWNGV 97 (208)
T ss_dssp EEEEEEEEC----------------------------------CEEEECTTSSEEEEEEEEETTTTHHHHHHHSTTCCCC
T ss_pred ccceEEEEECCCCCCHHHHHHHHHhCCCcccCCCCCccceEEEEEEEEECCcccEEEEEEEECCCcHHHHHHHHHHHhhC
Confidence 45789999999999999999999888 777777888887777777777776 88999999999999999999999999
Q ss_pred cEEEEEEeCCChhhhhhHHHHHHHHhhhcC----CCCEEEEEeCCCCCc-c-cc-CHHHHHHHHHcCCeEEEeccCC-CC
Q 030504 87 QCAIIMFDVTARLTYKNVPTWHRDLCRVCE----NIPIVLCGNKVDVKN-R-QV-KAKQVTFHRKKNLQYYEISAKS-NY 158 (176)
Q Consensus 87 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~----~~p~liv~nK~Dl~~-~-~~-~~~~~~~~~~~~~~~~~~S~~~-~~ 158 (176)
|++++|||++++.+++.+..|+..+..... +.|+++|+||+|+.. . .. ..+...+++..+++++++||++ +.
T Consensus 98 d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~ 177 (208)
T 2yc2_C 98 YYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLVANKTDLPPQRHQVRLDMAQDWATTNTLDFFDVSANPPGK 177 (208)
T ss_dssp CEEEEEEETTCHHHHHHHHHHHHHHHHHCSCTTSCCEEEEEEECC-------CCCHHHHHHHHHHTTCEEEECCC-----
T ss_pred cEEEEEEECCCHHHHHHHHHHHHHHHHhhcccccCCcEEEEEECcccchhhccCCHHHHHHHHHHcCCEEEEeccCCCCc
Confidence 999999999999999999999998877643 899999999999976 3 33 3456788888999999999999 99
Q ss_pred ChHHHHHHHHHHHhc
Q 030504 159 NFEKPFLYLARKLAG 173 (176)
Q Consensus 159 ~v~~~~~~l~~~i~~ 173 (176)
|++++|++|++.+.+
T Consensus 178 gi~~l~~~i~~~~~~ 192 (208)
T 2yc2_C 178 DADAPFLSIATTFYR 192 (208)
T ss_dssp --CHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHH
Confidence 999999999998764
|
| >4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.6e-35 Score=195.36 Aligned_cols=161 Identities=26% Similarity=0.468 Sum_probs=135.3
Q ss_pred CCCeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccccccccccEE
Q 030504 10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCA 89 (176)
Q Consensus 10 ~~~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~ 89 (176)
..+.+||+++|.+|||||||++++..+.+...+.++.+ +........++..+.+.+|||||++.+...+..+++.+|++
T Consensus 27 ~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ 105 (204)
T 4gzl_A 27 QGQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVF-DNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVF 105 (204)
T ss_dssp ---CEEEEEEESTTSSHHHHHHHHHHSCCCC-CCCCSE-EEEEEEEECC-CEEEEEEEEECCSGGGTTTGGGGCTTCSEE
T ss_pred cCCeEEEEEECcCCCCHHHHHHHHHhCCCCCCcCCeec-ceeEEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEE
Confidence 35689999999999999999999999988877777775 34445566777889999999999999999999999999999
Q ss_pred EEEEeCCChhhhhhHH-HHHHHHhhhcCCCCEEEEEeCCCCCccc--------------cCHHHHHHHHHcCC-eEEEec
Q 030504 90 IIMFDVTARLTYKNVP-TWHRDLCRVCENIPIVLCGNKVDVKNRQ--------------VKAKQVTFHRKKNL-QYYEIS 153 (176)
Q Consensus 90 i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~p~liv~nK~Dl~~~~--------------~~~~~~~~~~~~~~-~~~~~S 153 (176)
++|||++++.+++.+. .|+..+....++.|+++|+||+|+.... ...+...+++..++ +++++|
T Consensus 106 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~S 185 (204)
T 4gzl_A 106 LICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECS 185 (204)
T ss_dssp EEEEETTCHHHHHHHHHTHHHHHHHHCSSCCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECC
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEechhhccchhhhhhhhccccccccHHHHHHHHHhcCCcEEEEee
Confidence 9999999999999987 7888888777899999999999987532 22345577777775 599999
Q ss_pred cCCCCChHHHHHHHHHHH
Q 030504 154 AKSNYNFEKPFLYLARKL 171 (176)
Q Consensus 154 ~~~~~~v~~~~~~l~~~i 171 (176)
|++|.|++++|+++++.+
T Consensus 186 A~~g~gi~~l~~~l~~~~ 203 (204)
T 4gzl_A 186 ALTQRGLKTVFDEAIRAV 203 (204)
T ss_dssp TTTCTTHHHHHHHHHHTT
T ss_pred CCCCCCHHHHHHHHHHHh
Confidence 999999999999998865
|
| >1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-35 Score=194.83 Aligned_cols=161 Identities=22% Similarity=0.387 Sum_probs=131.5
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccccccccccEEE
Q 030504 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (176)
Q Consensus 11 ~~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 90 (176)
.+.+||+++|.+|+|||||++++..+.+...+.++.+.++... ....+.+.+|||||++.+...+..+++.+|+++
T Consensus 20 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~----~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii 95 (188)
T 1zd9_A 20 KEEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRKI----TKGNVTIKLWDIGGQPRFRSMWERYCRGVSAIV 95 (188)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEE----EETTEEEEEEEECCSHHHHTTHHHHHTTCSEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHHcCCCCCccCCCCceeEEEE----EeCCEEEEEEECCCCHhHHHHHHHHHccCCEEE
Confidence 4689999999999999999999999988877888888766543 235678999999999999999999999999999
Q ss_pred EEEeCCChhhhhhHHHHHHHHhhh--cCCCCEEEEEeCCCCCccccCHHHHHH-----HHHcCCeEEEeccCCCCChHHH
Q 030504 91 IMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVTF-----HRKKNLQYYEISAKSNYNFEKP 163 (176)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~--~~~~p~liv~nK~Dl~~~~~~~~~~~~-----~~~~~~~~~~~S~~~~~~v~~~ 163 (176)
+|||++++.+++.+..|+..+... ..+.|+++|+||+|+.......+.... +...+++++++||++|.|++++
T Consensus 96 ~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~l 175 (188)
T 1zd9_A 96 YMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGALDEKELIEKMNLSAIQDREICCYSISCKEKDNIDIT 175 (188)
T ss_dssp EEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHhCcccCCCCEEEEEECCCCccCCCHHHHHHHhChhhhccCCeeEEEEECCCCCCHHHH
Confidence 999999999999998888877653 368999999999999764322222211 1224568999999999999999
Q ss_pred HHHHHHHHhcCC
Q 030504 164 FLYLARKLAGST 175 (176)
Q Consensus 164 ~~~l~~~i~~~~ 175 (176)
|++|++.+.++.
T Consensus 176 ~~~l~~~~~~~~ 187 (188)
T 1zd9_A 176 LQWLIQHSKSRR 187 (188)
T ss_dssp HHHHHHTCC---
T ss_pred HHHHHHHHHhhc
Confidence 999999887664
|
| >2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-34 Score=192.84 Aligned_cols=160 Identities=21% Similarity=0.345 Sum_probs=128.2
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHhcCC-CCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccccccccccEE
Q 030504 11 YPSFKLVIVGDGGTGKTTFVKRHLTGE-FEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCA 89 (176)
Q Consensus 11 ~~~~~i~i~G~~~~GKttl~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~ 89 (176)
.+.+||+++|.+|+|||||++++..+. +...+.++.+..... +..+ .+.+.+|||||++.+...+..+++++|++
T Consensus 19 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~t~~~~~~~--~~~~--~~~~~l~Dt~G~~~~~~~~~~~~~~~d~i 94 (190)
T 2h57_A 19 SKEVHVLCLGLDNSGKTTIINKLKPSNAQSQNILPTIGFSIEK--FKSS--SLSFTVFDMSGQGRYRNLWEHYYKEGQAI 94 (190)
T ss_dssp --CEEEEEEECTTSSHHHHHHHTSCGGGCCSSCCCCSSEEEEE--EECS--SCEEEEEEECCSTTTGGGGGGGGGGCSEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCCCCCcCCccceeEEE--EEEC--CEEEEEEECCCCHHHHHHHHHHHhcCCEE
Confidence 468999999999999999999988777 566677777744333 3333 47899999999999999999999999999
Q ss_pred EEEEeCCChhhhhhHHHHHHHHhhhc----CCCCEEEEEeCCCCCccccCHHHHHHHH-----HcCCeEEEeccCCCCCh
Q 030504 90 IIMFDVTARLTYKNVPTWHRDLCRVC----ENIPIVLCGNKVDVKNRQVKAKQVTFHR-----KKNLQYYEISAKSNYNF 160 (176)
Q Consensus 90 i~v~d~~~~~s~~~~~~~~~~~~~~~----~~~p~liv~nK~Dl~~~~~~~~~~~~~~-----~~~~~~~~~S~~~~~~v 160 (176)
++|||++++.+++.+..|+..+.... .+.|+++|+||+|+.+.....+..+.+. ..+++++++||++|.|+
T Consensus 95 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi 174 (190)
T 2h57_A 95 IFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFANKMDLRDAVTSVKVSQLLCLENIKDKPWHICASDAIKGEGL 174 (190)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHSTTTTTSCCCEEEEEECTTSTTCCCHHHHHHHHTGGGCCSSCEEEEECBTTTTBTH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHhChhhccCCCeEEEEEeCcCcccCCCHHHHHHHhChhhccCCceEEEEccCCCCcCH
Confidence 99999999999999988888776543 5899999999999976544344444432 24678999999999999
Q ss_pred HHHHHHHHHHHhcC
Q 030504 161 EKPFLYLARKLAGS 174 (176)
Q Consensus 161 ~~~~~~l~~~i~~~ 174 (176)
+++|++|.+.+.+-
T Consensus 175 ~~l~~~l~~~i~~~ 188 (190)
T 2h57_A 175 QEGVDWLQDQIQTV 188 (190)
T ss_dssp HHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999987653
|
| >2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-34 Score=188.26 Aligned_cols=162 Identities=25% Similarity=0.418 Sum_probs=136.5
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccccccccccEEEE
Q 030504 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAII 91 (176)
Q Consensus 12 ~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~ 91 (176)
+.+||+++|.+|+|||||++++..+.+...+.++.+.+.. .....+...+.+.+|||||++.+...+..++..+|++++
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i~ 80 (172)
T 2erx_A 2 NDYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYR-QVISCDKSICTLQITDTTGSHQFPAMQRLSISKGHAFIL 80 (172)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEEEE-EEEEETTEEEEEEEEECCSCSSCHHHHHHHHHHCSEEEE
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccccEE-EEEEECCEEEEEEEEECCCchhhHHHHHHhcccCCEEEE
Confidence 4699999999999999999999988887777777765443 344567778899999999999999999999999999999
Q ss_pred EEeCCChhhhhhHHHHHHHHhhhc---CCCCEEEEEeCCCCCccc-cC-HHHHHHHHHcCCeEEEeccCCCCChHHHHHH
Q 030504 92 MFDVTARLTYKNVPTWHRDLCRVC---ENIPIVLCGNKVDVKNRQ-VK-AKQVTFHRKKNLQYYEISAKSNYNFEKPFLY 166 (176)
Q Consensus 92 v~d~~~~~s~~~~~~~~~~~~~~~---~~~p~liv~nK~Dl~~~~-~~-~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~ 166 (176)
|||++++.+++.+..|+..+.+.. ++.|+++|+||+|+.... .. .+...++...+++++++||++|.|++++|++
T Consensus 81 v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~pii~v~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 160 (172)
T 2erx_A 81 VYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPSREVQSSEAEALARTWKCAFMETSAKLNHNVKELFQE 160 (172)
T ss_dssp EEETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHH
T ss_pred EEECcCHHHHHHHHHHHHHHHHHhCCCCCCCEEEEEEccccccccccCHHHHHHHHHHhCCeEEEecCCCCcCHHHHHHH
Confidence 999999999999888887776643 589999999999997543 22 3456777888999999999999999999999
Q ss_pred HHHHHhcC
Q 030504 167 LARKLAGS 174 (176)
Q Consensus 167 l~~~i~~~ 174 (176)
|++.+.++
T Consensus 161 l~~~~~~~ 168 (172)
T 2erx_A 161 LLNLEKRR 168 (172)
T ss_dssp HHHTCCSS
T ss_pred HHHHHhhh
Confidence 99877654
|
| >2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-34 Score=192.43 Aligned_cols=163 Identities=26% Similarity=0.416 Sum_probs=139.2
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccccccccccEEE
Q 030504 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (176)
Q Consensus 11 ~~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 90 (176)
...+||+++|.+|||||||++++..+.+...+.++.+.+.. .....+...+.+.+|||||++.+...+..++..+|+++
T Consensus 6 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 84 (199)
T 2gf0_A 6 SNDYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDTYR-QVISCDKSVCTLQITDTTGSHQFPAMQRLSISKGHAFI 84 (199)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHSCCCCTTSCCCCEEEE-EEEEETTEEEEEEEEECCGGGSCHHHHHHHHHHCSEEE
T ss_pred CCeeEEEEECCCCCcHHHHHHHHHcCCCCCcccCcccccee-EEEEECCEEEEEEEEeCCChHHhHHHHHHhhccCCEEE
Confidence 46799999999999999999999999888777777765443 34556777889999999999999999999999999999
Q ss_pred EEEeCCChhhhhhHHHHHHHHhhhc---CCCCEEEEEeCCCCCccccC-HHHHHHHHHcCCeEEEeccCCCCChHHHHHH
Q 030504 91 IMFDVTARLTYKNVPTWHRDLCRVC---ENIPIVLCGNKVDVKNRQVK-AKQVTFHRKKNLQYYEISAKSNYNFEKPFLY 166 (176)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~~---~~~p~liv~nK~Dl~~~~~~-~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~ 166 (176)
+|||++++.+++.+..|+..+.... ++.|+++|+||+|+..+... .+...++...+++++++||++|.|++++|++
T Consensus 85 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 164 (199)
T 2gf0_A 85 LVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCDETQREVDTREAQAVAQEWKCAFMETSAKMNYNVKELFQE 164 (199)
T ss_dssp EEEETTCHHHHHTTHHHHHHHHHHHSCGGGSCEEEEEECTTCSSCSSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCCccccCHHHHHHHHHHhCCeEEEEecCCCCCHHHHHHH
Confidence 9999999999999888877766543 47899999999999865443 3456778888999999999999999999999
Q ss_pred HHHHHhcC
Q 030504 167 LARKLAGS 174 (176)
Q Consensus 167 l~~~i~~~ 174 (176)
|++.+.++
T Consensus 165 l~~~~~~~ 172 (199)
T 2gf0_A 165 LLTLETRR 172 (199)
T ss_dssp HHHHCSSS
T ss_pred HHHHHhhh
Confidence 99987654
|
| >1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-34 Score=190.96 Aligned_cols=159 Identities=17% Similarity=0.267 Sum_probs=130.8
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccccccccccEEE
Q 030504 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (176)
Q Consensus 11 ~~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 90 (176)
.+.+||+++|.+|||||||++++..+. ...+.++.+........ ..+.+.+|||||++.+...+..+++++|+++
T Consensus 16 ~~~~~i~v~G~~~~GKssl~~~l~~~~-~~~~~~t~~~~~~~~~~----~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii 90 (186)
T 1ksh_A 16 ERELRLLMLGLDNAGKTTILKKFNGED-VDTISPTLGFNIKTLEH----RGFKLNIWDVGGQKSLRSYWRNYFESTDGLI 90 (186)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHTTCC-CSSCCCCSSEEEEEEEE----TTEEEEEEEECCSHHHHTTGGGGCTTCSEEE
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhcCC-CCcccccCccceEEEEE----CCEEEEEEECCCCHhHHHHHHHHhcCCCEEE
Confidence 578999999999999999999998877 66677888755444333 3578999999999999999999999999999
Q ss_pred EEEeCCChhhhhhHHHHHHHHhhh--cCCCCEEEEEeCCCCCccccCHHHHHHH-----HHcCCeEEEeccCCCCChHHH
Q 030504 91 IMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVTFH-----RKKNLQYYEISAKSNYNFEKP 163 (176)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~--~~~~p~liv~nK~Dl~~~~~~~~~~~~~-----~~~~~~~~~~S~~~~~~v~~~ 163 (176)
+|+|++++.+++.+..|+..+... .++.|+++|+||+|+.......+..+.. ...+++++++||++|.|++++
T Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l 170 (186)
T 1ksh_A 91 WVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGALSCNAIQEALELDSIRSHHWRIQGCSAVTGEDLLPG 170 (186)
T ss_dssp EEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHhChhcCCCcEEEEEeCccCCCCCCHHHHHHHhChhhccCCceEEEEeeCCCCCCHHHH
Confidence 999999999999998888777654 3689999999999997654333322222 235678999999999999999
Q ss_pred HHHHHHHHhcC
Q 030504 164 FLYLARKLAGS 174 (176)
Q Consensus 164 ~~~l~~~i~~~ 174 (176)
|+++++.+.++
T Consensus 171 ~~~l~~~i~~~ 181 (186)
T 1ksh_A 171 IDWLLDDISSR 181 (186)
T ss_dssp HHHHHHHHHTC
T ss_pred HHHHHHHHHhc
Confidence 99999988764
|
| >2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-34 Score=194.04 Aligned_cols=164 Identities=20% Similarity=0.304 Sum_probs=131.1
Q ss_pred CCCeeEEEEEcCCCCcHHHHHHHHhcCC--CCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccc-cccccccccccc
Q 030504 10 DYPSFKLVIVGDGGTGKTTFVKRHLTGE--FEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK-FGGLRDGYYIHG 86 (176)
Q Consensus 10 ~~~~~~i~i~G~~~~GKttl~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~-~~~~~~~~~~~~ 86 (176)
....+||+++|.+|||||||+++|.... +...+ ++.|.+.....+.+++..+.+.+|||+|++. +..+...+++.+
T Consensus 34 ~~~~~kVvlvG~~~vGKSSLl~r~~~~~~~~~~~~-~~~g~d~~~~~i~~~~~~~~l~~~Dt~g~~~~~~~l~~~~~~~a 112 (211)
T 2g3y_A 34 GNTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDC-EVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVG 112 (211)
T ss_dssp -CCEEEEEEECCTTSSHHHHHHHHHCCCCTTCCC----CCTTEEEEEEEETTEEEEEEEECCTTTTHHHHHHHHCCCCCC
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCcC-CccceeeEEEEEEECCeeeEEEEeecCCCcchhhhHHHHHHhhC
Confidence 3467999999999999999999987543 23332 3455565566667788888999999999876 455677788899
Q ss_pred cEEEEEEeCCChhhhhhHHHHHHHHhhh--cCCCCEEEEEeCCCCCcc-ccC-HHHHHHHHHcCCeEEEeccCCCCChHH
Q 030504 87 QCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNR-QVK-AKQVTFHRKKNLQYYEISAKSNYNFEK 162 (176)
Q Consensus 87 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~--~~~~p~liv~nK~Dl~~~-~~~-~~~~~~~~~~~~~~~~~S~~~~~~v~~ 162 (176)
+++++|||++++.+|+.+..|...+... .++.|+++|+||+|+... ... .+...++...++++++|||++|.|+++
T Consensus 113 ~~~ilVydvt~~~sf~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~r~v~~~e~~~~a~~~~~~~~e~SAk~g~~v~e 192 (211)
T 2g3y_A 113 DAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRCREVSVSEGRACAVVFDCKFIETSAAVQHNVKE 192 (211)
T ss_dssp SEEEEEEETTCHHHHHHHHHHHHHHHTSGGGTTSCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHH
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCcEEEEEEChHHhcCceEeHHHHHHHHHHcCCEEEEEeCCCCCCHHH
Confidence 9999999999999999999888877653 358999999999999753 333 334567788899999999999999999
Q ss_pred HHHHHHHHHhcC
Q 030504 163 PFLYLARKLAGS 174 (176)
Q Consensus 163 ~~~~l~~~i~~~ 174 (176)
+|+++++.+..+
T Consensus 193 lf~~l~~~i~~~ 204 (211)
T 2g3y_A 193 LFEGIVRQVRLR 204 (211)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 999999987543
|
| >1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=100.00 E-value=9.2e-35 Score=192.68 Aligned_cols=160 Identities=23% Similarity=0.312 Sum_probs=126.9
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccccccccccEEE
Q 030504 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (176)
Q Consensus 11 ~~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 90 (176)
.+.+||+++|.+|||||||++++..+.+. .+.+|.+.+.... .. ..+.+.+|||||++++...+..+++++|+++
T Consensus 14 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~-~~~~t~~~~~~~~--~~--~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii 88 (187)
T 1zj6_A 14 HQEHKVIIVGLDNAGKTTILYQFSMNEVV-HTSPTIGSNVEEI--VI--NNTRFLMWDIGGQESLRSSWNTYYTNTEFVI 88 (187)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHHTTSCE-EEECCSCSSCEEE--EE--TTEEEEEEECCC----CGGGHHHHTTCCEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCC-cCcCCCccceEEE--EE--CCEEEEEEECCCCHhHHHHHHHHhcCCCEEE
Confidence 46799999999999999999999988876 5677776443333 33 3478999999999999999999999999999
Q ss_pred EEEeCCChhhhhhHHHHHHHHhhh--cCCCCEEEEEeCCCCCccccCHHHHHHH-----HHcCCeEEEeccCCCCChHHH
Q 030504 91 IMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVTFH-----RKKNLQYYEISAKSNYNFEKP 163 (176)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~--~~~~p~liv~nK~Dl~~~~~~~~~~~~~-----~~~~~~~~~~S~~~~~~v~~~ 163 (176)
+|+|++++.+++.+..|+..+... ..+.|+++|+||+|+.+.....+..+.. +..+++++++||++|.|++++
T Consensus 89 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l 168 (187)
T 1zj6_A 89 VVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQG 168 (187)
T ss_dssp EEEETTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTGGGCCSSCEEEEECBTTTTBTHHHH
T ss_pred EEEeCCCHHHHHHHHHHHHHHHhchhhCCCeEEEEEECCCCcCCCCHHHHHHHhChhhhcCCCcEEEEccCCCCcCHHHH
Confidence 999999999999999988888764 3689999999999997644333333322 234678999999999999999
Q ss_pred HHHHHHHHhcCC
Q 030504 164 FLYLARKLAGST 175 (176)
Q Consensus 164 ~~~l~~~i~~~~ 175 (176)
|++|++.+.+.+
T Consensus 169 ~~~l~~~~~~~~ 180 (187)
T 1zj6_A 169 LEWMMSRLKIRL 180 (187)
T ss_dssp HHHHHHHHCC--
T ss_pred HHHHHHHHHHHh
Confidence 999999887654
|
| >2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.1e-35 Score=193.45 Aligned_cols=158 Identities=22% Similarity=0.319 Sum_probs=125.6
Q ss_pred CCCCCeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCcccccccccccccccc
Q 030504 8 TVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQ 87 (176)
Q Consensus 8 ~~~~~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~ 87 (176)
+...+.+||+++|.+|||||||++++..+.+ ..+.++.|...... .. ..+.+.+|||||++.+...+..+++.+|
T Consensus 16 ~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~-~~~~~t~~~~~~~~--~~--~~~~~~i~Dt~G~~~~~~~~~~~~~~~d 90 (181)
T 2h17_A 16 PRGSQEHKVIIVGLDNAGKTTILYQFSMNEV-VHTSPTIGSNVEEI--VI--NNTRFLMWDIGGQESLRSSWNTYYTNTE 90 (181)
T ss_dssp -----CEEEEEEEETTSSHHHHHHHHHTTSC-EEEECCSSSSCEEE--EE--TTEEEEEEEESSSGGGTCGGGGGGTTCC
T ss_pred CCCCceeEEEEECCCCCCHHHHHHHHhcCCC-CccCCcCceeeEEE--EE--CCEEEEEEECCCCHhHHHHHHHHhccCC
Confidence 3445789999999999999999999998887 55677777554333 33 3478999999999999999999999999
Q ss_pred EEEEEEeCCChhhhhhHHHHHHHHhhh--cCCCCEEEEEeCCCCCccccCHHHHHHH-----HHcCCeEEEeccCCCCCh
Q 030504 88 CAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVTFH-----RKKNLQYYEISAKSNYNF 160 (176)
Q Consensus 88 ~~i~v~d~~~~~s~~~~~~~~~~~~~~--~~~~p~liv~nK~Dl~~~~~~~~~~~~~-----~~~~~~~~~~S~~~~~~v 160 (176)
++++|+|++++.+++.+..|+..+... ..+.|+++|+||+|+.......+..+.. ...+++++++||++|.|+
T Consensus 91 ~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gi 170 (181)
T 2h17_A 91 FVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQFLKLTSIKDHQWHIQACCALTGEGL 170 (181)
T ss_dssp EEEEEEETTCTTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECBTTTTBTH
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHhChhhCCCeEEEEEECCCcccCCCHHHHHHHhCcccccCCceEEEEccCCCCcCH
Confidence 999999999999999998888877654 3689999999999997643333332222 234578999999999999
Q ss_pred HHHHHHHHHH
Q 030504 161 EKPFLYLARK 170 (176)
Q Consensus 161 ~~~~~~l~~~ 170 (176)
+++|++|++.
T Consensus 171 ~~l~~~l~~~ 180 (181)
T 2h17_A 171 CQGLEWMMSR 180 (181)
T ss_dssp HHHHHHHHTC
T ss_pred HHHHHHHHhh
Confidence 9999999864
|
| >1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-34 Score=193.05 Aligned_cols=158 Identities=17% Similarity=0.235 Sum_probs=121.1
Q ss_pred CCCCeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccccccccccE
Q 030504 9 VDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQC 88 (176)
Q Consensus 9 ~~~~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~ 88 (176)
...+.+||+++|++|||||||++++..+.+. .+.+|.+.+.. .+..++ +.+.+|||||++.++..+..+++.+|+
T Consensus 21 ~~~~~~ki~lvG~~~vGKSsLi~~l~~~~~~-~~~~t~~~~~~--~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~~d~ 95 (198)
T 1f6b_A 21 LYKKTGKLVFLGLDNAGKTTLLHMLKDDRLG-QHVPTLHPTSE--ELTIAG--MTFTTFDLGGHIQARRVWKNYLPAING 95 (198)
T ss_dssp CTTCCEEEEEEEETTSSHHHHHHHHSCC-------CCCCCSCE--EEEETT--EEEEEEEECC----CCGGGGGGGGCSE
T ss_pred ccCCCcEEEEECCCCCCHHHHHHHHhcCCCC-ccCCCCCceeE--EEEECC--EEEEEEECCCcHhhHHHHHHHHhcCCE
Confidence 3456789999999999999999998877764 45667665432 333443 789999999999999999999999999
Q ss_pred EEEEEeCCChhhhhhHHHHHHHHhhh--cCCCCEEEEEeCCCCCccccCHHHHHHHHH-----------------cCCeE
Q 030504 89 AIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVTFHRK-----------------KNLQY 149 (176)
Q Consensus 89 ~i~v~d~~~~~s~~~~~~~~~~~~~~--~~~~p~liv~nK~Dl~~~~~~~~~~~~~~~-----------------~~~~~ 149 (176)
+++|+|++++.+++.+..|+..+.+. ..+.|+++|+||+|+.......+..+++.. .++++
T Consensus 96 ~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (198)
T 1f6b_A 96 IVFLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPEAISEERLREMFGLYGQTTGKGSVSLKELNARPLEV 175 (198)
T ss_dssp EEEEEETTCGGGHHHHHHHHHHHHTCGGGTTSCEEEEEECTTSTTCCCHHHHHHHHTCTTTCCCSSCCCTTTCCSCCEEE
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEEECCCccccCCHHHHHHHhCcccccccccccccccccCceEEE
Confidence 99999999999999999988887654 368999999999999864333444444432 34689
Q ss_pred EEeccCCCCChHHHHHHHHHHH
Q 030504 150 YEISAKSNYNFEKPFLYLARKL 171 (176)
Q Consensus 150 ~~~S~~~~~~v~~~~~~l~~~i 171 (176)
++|||++|.|++++|++|++.+
T Consensus 176 ~~~SA~~g~gv~~l~~~l~~~l 197 (198)
T 1f6b_A 176 FMCSVLKRQGYGEGFRWMAQYI 197 (198)
T ss_dssp EECBTTTTBSHHHHHHHHHTTC
T ss_pred EEEECCCCCCHHHHHHHHHHhc
Confidence 9999999999999999998754
|
| >1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-33 Score=184.01 Aligned_cols=159 Identities=21% Similarity=0.341 Sum_probs=129.7
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccccccccccEEE
Q 030504 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (176)
Q Consensus 11 ~~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 90 (176)
.+.+||+++|.+|+|||||++++..+.+.. +.++.+........ ....+.+|||||++.+...+..+++.+|+++
T Consensus 5 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~~~~~~----~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii 79 (171)
T 1upt_A 5 TREMRILILGLDGAGKTTILYRLQVGEVVT-TIPTIGFNVETVTY----KNLKFQVWDLGGLTSIRPYWRCYYSNTDAVI 79 (171)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHSSCCC-CCCCSSEEEEEEEE----TTEEEEEEEECCCGGGGGGGGGGCTTCSEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCCC-cCCcCccceEEEEE----CCEEEEEEECCCChhhhHHHHHHhccCCEEE
Confidence 457999999999999999999998888754 56677655443333 3678999999999999999999999999999
Q ss_pred EEEeCCChhhhhhHHHHHHHHhhh--cCCCCEEEEEeCCCCCccccCHHHH-----HHHHHcCCeEEEeccCCCCChHHH
Q 030504 91 IMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQV-----TFHRKKNLQYYEISAKSNYNFEKP 163 (176)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~--~~~~p~liv~nK~Dl~~~~~~~~~~-----~~~~~~~~~~~~~S~~~~~~v~~~ 163 (176)
+|+|++++.+++....|+..+... ..+.|+++|+||+|+.+.....+.. ..+...+++++++||++|.|++++
T Consensus 80 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l 159 (171)
T 1upt_A 80 YVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMTSSEMANSLGLPALKDRKWQIFKTSATKGTGLDEA 159 (171)
T ss_dssp EEEETTCCTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTGGGCTTSCEEEEECCTTTCTTHHHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHhchhhCCCEEEEEEECCCCcCCCCHHHHHHHhCchhccCCceEEEECcCCCCcCHHHH
Confidence 999999999999888888777654 2689999999999997653322222 223345678999999999999999
Q ss_pred HHHHHHHHhcC
Q 030504 164 FLYLARKLAGS 174 (176)
Q Consensus 164 ~~~l~~~i~~~ 174 (176)
|+++++.+.++
T Consensus 160 ~~~l~~~i~~~ 170 (171)
T 1upt_A 160 MEWLVETLKSR 170 (171)
T ss_dssp HHHHHHHHHTC
T ss_pred HHHHHHHHhhc
Confidence 99999998765
|
| >1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=5e-34 Score=189.67 Aligned_cols=157 Identities=18% Similarity=0.283 Sum_probs=124.6
Q ss_pred CCCCeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccccccccccE
Q 030504 9 VDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQC 88 (176)
Q Consensus 9 ~~~~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~ 88 (176)
...+.+||+++|++|||||||++++..+.+. .+.++.+.+.. .+..++ +.+.+|||||++.++..+..+++.+|+
T Consensus 19 ~~~~~~ki~~vG~~~vGKSsli~~l~~~~~~-~~~~t~~~~~~--~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~ 93 (190)
T 1m2o_B 19 LWNKHGKLLFLGLDNAGKTTLLHMLKNDRLA-TLQPTWHPTSE--ELAIGN--IKFTTFDLGGHIQARRLWKDYFPEVNG 93 (190)
T ss_dssp -----CEEEEEESTTSSHHHHHHHHHHSCCC-CCCCCCSCEEE--EEEETT--EEEEEEECCCSGGGTTSGGGGCTTCCE
T ss_pred ccCCccEEEEECCCCCCHHHHHHHHhcCCCC-ccccCCCCCeE--EEEECC--EEEEEEECCCCHHHHHHHHHHHhcCCE
Confidence 3456789999999999999999999888764 45677766433 333443 789999999999999999999999999
Q ss_pred EEEEEeCCChhhhhhHHHHHHHHhhh--cCCCCEEEEEeCCCCCccccCHHHHHHHH------------HcCCeEEEecc
Q 030504 89 AIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVTFHR------------KKNLQYYEISA 154 (176)
Q Consensus 89 ~i~v~d~~~~~s~~~~~~~~~~~~~~--~~~~p~liv~nK~Dl~~~~~~~~~~~~~~------------~~~~~~~~~S~ 154 (176)
+++|||++++.+++.+..|+..+... ..+.|+++|+||+|+.......+..+.+. ..++++++|||
T Consensus 94 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 173 (190)
T 1m2o_B 94 IVFLVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPNAVSEAELRSALGLLNTTGSQRIEGQRPVEVFMCSV 173 (190)
T ss_dssp EEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTTCSSCCC---CCSSCCEEEEECBT
T ss_pred EEEEEECCChHHHHHHHHHHHHHHcchhhcCCCEEEEEECCCCcCCCCHHHHHHHhCCccccccccccccceEEEEEeEC
Confidence 99999999999999999888887653 36899999999999987433333333332 24578999999
Q ss_pred CCCCChHHHHHHHHHH
Q 030504 155 KSNYNFEKPFLYLARK 170 (176)
Q Consensus 155 ~~~~~v~~~~~~l~~~ 170 (176)
++|.|++++|++|++.
T Consensus 174 ~~g~gi~~l~~~l~~~ 189 (190)
T 1m2o_B 174 VMRNGYLEAFQWLSQY 189 (190)
T ss_dssp TTTBSHHHHHHHHHTT
T ss_pred CcCCCHHHHHHHHHhh
Confidence 9999999999999864
|
| >2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.3e-34 Score=189.84 Aligned_cols=161 Identities=21% Similarity=0.299 Sum_probs=123.5
Q ss_pred CCCCeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccccccccccE
Q 030504 9 VDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQC 88 (176)
Q Consensus 9 ~~~~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~ 88 (176)
...+.+||+++|++|||||||++++..+.+. .+.||.+..... +. ...+.+.+|||||++.+...+..+++.+|+
T Consensus 25 ~~~~~~ki~v~G~~~vGKSsLi~~l~~~~~~-~~~~t~~~~~~~--~~--~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ 99 (192)
T 2b6h_A 25 FGKKQMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVET--VE--YKNICFTVWDVGGQDKIRPLWRHYFQNTQG 99 (192)
T ss_dssp TTTSCEEEEEEESTTSSHHHHHHHHCSSCCE-EEEEETTEEEEE--EE--ETTEEEEEEECC-----CTTHHHHHHTCCE
T ss_pred ccCCccEEEEECCCCCCHHHHHHHHHhCCcc-ccCCcCceeEEE--EE--ECCEEEEEEECCCCHhHHHHHHHHhccCCE
Confidence 3457899999999999999999998888775 345666533322 22 255789999999999999999999999999
Q ss_pred EEEEEeCCChhhhhhHHHHHHHHhhh--cCCCCEEEEEeCCCCCccccCHHHHH-----HHHHcCCeEEEeccCCCCChH
Q 030504 89 AIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVT-----FHRKKNLQYYEISAKSNYNFE 161 (176)
Q Consensus 89 ~i~v~d~~~~~s~~~~~~~~~~~~~~--~~~~p~liv~nK~Dl~~~~~~~~~~~-----~~~~~~~~~~~~S~~~~~~v~ 161 (176)
+++|||++++.+++.+..|+..+... .++.|+++|+||+|+.......+... .+...++++++|||++|.|++
T Consensus 100 iilv~D~~~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~SA~~g~gi~ 179 (192)
T 2b6h_A 100 LIFVVDSNDRERVQESADELQKMLQEDELRDAVLLVFANKQDMPNAMPVSELTDKLGLQHLRSRTWYVQATCATQGTGLY 179 (192)
T ss_dssp EEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCSSCCEEEEECBTTTTBTHH
T ss_pred EEEEEECCCHHHHHHHHHHHHHHhcccccCCCeEEEEEECCCCCCCCCHHHHHHHhCcccccCCceEEEECcCCCcCCHH
Confidence 99999999999999998888877653 25899999999999976432222211 122345689999999999999
Q ss_pred HHHHHHHHHHhcC
Q 030504 162 KPFLYLARKLAGS 174 (176)
Q Consensus 162 ~~~~~l~~~i~~~ 174 (176)
++|++|++.+.++
T Consensus 180 ~l~~~l~~~i~~q 192 (192)
T 2b6h_A 180 DGLDWLSHELSKR 192 (192)
T ss_dssp HHHHHHHHHTTTC
T ss_pred HHHHHHHHHHhcC
Confidence 9999999988654
|
| >1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.6e-34 Score=188.48 Aligned_cols=160 Identities=17% Similarity=0.308 Sum_probs=126.0
Q ss_pred CCCeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccccccccccEE
Q 030504 10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCA 89 (176)
Q Consensus 10 ~~~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~ 89 (176)
+...+||+++|++|||||||++++..+.+ ..+.++.|...... ..+ .+.+.+|||||++.+...+..+++.+|++
T Consensus 13 ~~~~~ki~ivG~~~vGKSsL~~~l~~~~~-~~~~~t~g~~~~~~--~~~--~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ 87 (181)
T 1fzq_A 13 PDQEVRILLLGLDNAGKTTLLKQLASEDI-SHITPTQGFNIKSV--QSQ--GFKLNVWDIGGQRKIRPYWRSYFENTDIL 87 (181)
T ss_dssp CSSCEEEEEEESTTSSHHHHHHHHCCSCC-EEEEEETTEEEEEE--EET--TEEEEEEECSSCGGGHHHHHHHHTTCSEE
T ss_pred CCCceEEEEECCCCCCHHHHHHHHhcCCC-CcccCcCCeEEEEE--EEC--CEEEEEEECCCCHHHHHHHHHHhCCCCEE
Confidence 35679999999999999999999876654 45567777544333 333 57899999999999999999999999999
Q ss_pred EEEEeCCChhhhhhHHHHHHHHhhh--cCCCCEEEEEeCCCCCccccCHHHHHH-----HHHcCCeEEEeccCCCCChHH
Q 030504 90 IIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVTF-----HRKKNLQYYEISAKSNYNFEK 162 (176)
Q Consensus 90 i~v~d~~~~~s~~~~~~~~~~~~~~--~~~~p~liv~nK~Dl~~~~~~~~~~~~-----~~~~~~~~~~~S~~~~~~v~~ 162 (176)
++|||++++.+++.+..|+..+... ..+.|+++|+||+|+.......+.... +...++++++|||++|.|+++
T Consensus 88 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~ 167 (181)
T 1fzq_A 88 IYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAAPASEIAEGLNLHTIRDRVWQIQSCSALTGEGVQD 167 (181)
T ss_dssp EEEEETTCGGGHHHHHHHHHHHTTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHH
T ss_pred EEEEECcCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcCcccCCCHHHHHHHhCchhccCCceEEEEccCCCCCCHHH
Confidence 9999999999999998888777543 368999999999999765433222221 123457899999999999999
Q ss_pred HHHHHHHHHhcC
Q 030504 163 PFLYLARKLAGS 174 (176)
Q Consensus 163 ~~~~l~~~i~~~ 174 (176)
+|+++++.+.++
T Consensus 168 l~~~l~~~~~~~ 179 (181)
T 1fzq_A 168 GMNWVCKNVNAK 179 (181)
T ss_dssp HHHHHHHTC---
T ss_pred HHHHHHHHHHhc
Confidence 999999987654
|
| >1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ... | Back alignment and structure |
|---|
Probab=100.00 E-value=4.8e-34 Score=185.30 Aligned_cols=156 Identities=24% Similarity=0.325 Sum_probs=123.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccccccccccEEEEEE
Q 030504 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMF 93 (176)
Q Consensus 14 ~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 93 (176)
+||+++|.+|||||||++++..+.+.. +.||.+.... . .....+.+.+|||||++.+...+..+++++|++++||
T Consensus 1 ~ki~~~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~~--~--~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 75 (164)
T 1r8s_A 1 MRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVE--T--VEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 75 (164)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHCSSC-CCCCSSCCEE--E--EECSSCEEEEEECCCCGGGHHHHHHHTTTCSEEEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCcCc-ccCcCceeEE--E--EEECCEEEEEEEcCCChhhHHHHHHHhccCCEEEEEE
Confidence 589999999999999999998888764 4667663322 2 2335578999999999999999999999999999999
Q ss_pred eCCChhhhhhHHHHHHHHhhh--cCCCCEEEEEeCCCCCccccCHHHHH-----HHHHcCCeEEEeccCCCCChHHHHHH
Q 030504 94 DVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVT-----FHRKKNLQYYEISAKSNYNFEKPFLY 166 (176)
Q Consensus 94 d~~~~~s~~~~~~~~~~~~~~--~~~~p~liv~nK~Dl~~~~~~~~~~~-----~~~~~~~~~~~~S~~~~~~v~~~~~~ 166 (176)
|++++.+++.+..|+..+... .++.|+++|+||+|+.+.....+... .++..+++++++||++|.|++++|++
T Consensus 76 d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 155 (164)
T 1r8s_A 76 DSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDW 155 (164)
T ss_dssp ETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCSSCCEEEEECBTTTTBTHHHHHHH
T ss_pred ECCCHHHHHHHHHHHHHHHhchhhcCCeEEEEEECcCCcCCCCHHHHHHHhCcccccCccEEEEEcccCCCcCHHHHHHH
Confidence 999999999998888877653 36899999999999976432222211 12224568999999999999999999
Q ss_pred HHHHHhcC
Q 030504 167 LARKLAGS 174 (176)
Q Consensus 167 l~~~i~~~ 174 (176)
+++.+.++
T Consensus 156 l~~~i~~~ 163 (164)
T 1r8s_A 156 LSNQLRNQ 163 (164)
T ss_dssp HHHHC---
T ss_pred HHHHHhhc
Confidence 99988764
|
| >1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=100.00 E-value=4.6e-34 Score=188.56 Aligned_cols=159 Identities=19% Similarity=0.282 Sum_probs=125.5
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccccccccccEEE
Q 030504 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (176)
Q Consensus 11 ~~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 90 (176)
.+.+||+++|++|||||||++++..+.+ ..+.++.+...... .. ....+.+|||||++.+...+..+++.+|+++
T Consensus 16 ~~~~~i~v~G~~~~GKssli~~l~~~~~-~~~~~t~~~~~~~~--~~--~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii 90 (183)
T 1moz_A 16 NKELRILILGLDGAGKTTILYRLQIGEV-VTTKPTIGFNVETL--SY--KNLKLNVWDLGGQTSIRPYWRCYYADTAAVI 90 (183)
T ss_dssp SSCEEEEEEEETTSSHHHHHHHTCCSEE-EEECSSTTCCEEEE--EE--TTEEEEEEEEC----CCTTGGGTTTTEEEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCc-CccCCcCccceEEE--EE--CCEEEEEEECCCCHhHHHHHHHHhccCCEEE
Confidence 5789999999999999999999887777 55667776444333 23 3478999999999999999999999999999
Q ss_pred EEEeCCChhhhhhHHHHHHHHhhh--cCCCCEEEEEeCCCCCccccCHHHHHHH-----HHcCCeEEEeccCCCCChHHH
Q 030504 91 IMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVTFH-----RKKNLQYYEISAKSNYNFEKP 163 (176)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~--~~~~p~liv~nK~Dl~~~~~~~~~~~~~-----~~~~~~~~~~S~~~~~~v~~~ 163 (176)
+|+|++++.+++.+..|+..+... ..+.|+++|+||+|+.+.....+..+.. ...+++++++||++|.|++++
T Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l 170 (183)
T 1moz_A 91 FVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPGALSASEVSKELNLVELKDRSWSIVASSAIKGEGITEG 170 (183)
T ss_dssp EEEETTCTTTHHHHHHHHHHHTTSSTTSSCEEEEEEECTTSTTCCCHHHHHHHTTTTTCCSSCEEEEEEBGGGTBTHHHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHcChhhCCCeEEEEEECCCCCCCCCHHHHHHHhCcccccCCceEEEEccCCCCcCHHHH
Confidence 999999999999999888887765 3689999999999997653333332222 123468999999999999999
Q ss_pred HHHHHHHHhcC
Q 030504 164 FLYLARKLAGS 174 (176)
Q Consensus 164 ~~~l~~~i~~~ 174 (176)
|++|++.+.++
T Consensus 171 ~~~l~~~~~~~ 181 (183)
T 1moz_A 171 LDWLIDVIKEE 181 (183)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHhc
Confidence 99999988654
|
| >2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.8e-33 Score=183.91 Aligned_cols=162 Identities=20% Similarity=0.320 Sum_probs=127.1
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHhcCC--CCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccc-ccccccccccccc
Q 030504 11 YPSFKLVIVGDGGTGKTTFVKRHLTGE--FEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK-FGGLRDGYYIHGQ 87 (176)
Q Consensus 11 ~~~~~i~i~G~~~~GKttl~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~-~~~~~~~~~~~~~ 87 (176)
...+||+++|.+|||||||+++|.+.. +...+ ++.|.+.....+.+++..+.+.+|||+|.+. ...+...+++.+|
T Consensus 4 ~~~~kv~lvG~~~vGKSsL~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~Dt~~~~~~~~~~~~~~~~~~~ 82 (192)
T 2cjw_A 4 MTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDX-EVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVGD 82 (192)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHHSCCC-----GGGCTTEEEEEEEETTEEEEEEEECCCCC----CTTGGGHHHHCS
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCcCCcCccc-cccceeEEEEEEEECCeEEEEEEEEeccCcchhhhHHHhhcccCC
Confidence 457999999999999999999988533 33333 3355555556667788888999999999876 5567778888999
Q ss_pred EEEEEEeCCChhhhhhHHHHHHHHhhh--cCCCCEEEEEeCCCCCcc-ccC-HHHHHHHHHcCCeEEEeccCCCCChHHH
Q 030504 88 CAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNR-QVK-AKQVTFHRKKNLQYYEISAKSNYNFEKP 163 (176)
Q Consensus 88 ~~i~v~d~~~~~s~~~~~~~~~~~~~~--~~~~p~liv~nK~Dl~~~-~~~-~~~~~~~~~~~~~~~~~S~~~~~~v~~~ 163 (176)
++++|||++++.+|+.+..|...+... .++.|+++|+||+|+... ... .+...++...++++++|||++|.|++++
T Consensus 83 ~~i~v~dv~~~~s~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~r~v~~~~~~~~a~~~~~~~~e~SA~~g~~v~~l 162 (192)
T 2cjw_A 83 AYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRXREVSVSEGRAXAVVFDXKFIETSAAVQHNVKEL 162 (192)
T ss_dssp EEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHH
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCeEEEEEechhhhccccccHHHHHHHHHHhCCceEEeccccCCCHHHH
Confidence 999999999999999999888777654 257999999999999753 222 3344667778899999999999999999
Q ss_pred HHHHHHHHhc
Q 030504 164 FLYLARKLAG 173 (176)
Q Consensus 164 ~~~l~~~i~~ 173 (176)
|.++++.+..
T Consensus 163 f~~l~~~~~~ 172 (192)
T 2cjw_A 163 FEGIVRQVRL 172 (192)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 9999998753
|
| >2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major} | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-33 Score=186.50 Aligned_cols=159 Identities=19% Similarity=0.267 Sum_probs=128.1
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccccccccccEEE
Q 030504 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (176)
Q Consensus 11 ~~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 90 (176)
.+.+||+++|.+|||||||++++..+.+.. +.+|.+....... . ..+.+.+|||||++.+...+..+++.+|+++
T Consensus 20 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~-~~~t~~~~~~~~~--~--~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii 94 (189)
T 2x77_A 20 DRKIRVLMLGLDNAGKTSILYRLHLGDVVT-TVPTVGVNLETLQ--Y--KNISFEVWDLGGQTGVRPYWRCYFSDTDAVI 94 (189)
T ss_dssp TSCEEEEEEEETTSSHHHHHHHTCCSCCEE-ECSSTTCCEEEEE--E--TTEEEEEEEECCSSSSCCCCSSSSTTCCEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHcCCCCC-cCCCCceEEEEEE--E--CCEEEEEEECCCCHhHHHHHHHHhhcCCEEE
Confidence 568999999999999999999988777653 5666664433332 2 3578999999999999999999999999999
Q ss_pred EEEeCCChhhhhhHHHHHHHHhhh--cCCCCEEEEEeCCCCCccccCHHHHH-----HHHHcCCeEEEeccCCCCChHHH
Q 030504 91 IMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVT-----FHRKKNLQYYEISAKSNYNFEKP 163 (176)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~--~~~~p~liv~nK~Dl~~~~~~~~~~~-----~~~~~~~~~~~~S~~~~~~v~~~ 163 (176)
+|+|++++.+++.+..|+..+... .++.|+++|+||+|+.......+... .+...+++++++||+++.|++++
T Consensus 95 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l 174 (189)
T 2x77_A 95 YVVDSTDRDRMGVAKHELYALLDEDELRKSLLLIFANKQDLPDAASEAEIAEQLGVSSIMNRTWTIVKSSSKTGDGLVEG 174 (189)
T ss_dssp EEEETTCCTTHHHHHHHHHHHHTCSTTTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHH
T ss_pred EEEeCCCHHHHHHHHHHHHHHHhhhhcCCCeEEEEEECCCCcCCCCHHHHHHHhChhhccCCceEEEEccCCCccCHHHH
Confidence 999999999999988888777654 25899999999999976533222221 22334678999999999999999
Q ss_pred HHHHHHHHhcC
Q 030504 164 FLYLARKLAGS 174 (176)
Q Consensus 164 ~~~l~~~i~~~ 174 (176)
|+++++.+.++
T Consensus 175 ~~~l~~~i~~~ 185 (189)
T 2x77_A 175 MDWLVERLREQ 185 (189)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHhc
Confidence 99999988765
|
| >2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.6e-34 Score=188.52 Aligned_cols=163 Identities=18% Similarity=0.332 Sum_probs=123.4
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcC--CCCCccccceeEEEeEEEEEe---cCcEEEEEEEeCCCcccccccccccccccc
Q 030504 13 SFKLVIVGDGGTGKTTFVKRHLTG--EFEKKYEPTIGVEVHPLDFFT---NCGKIRFYCWDTAGQEKFGGLRDGYYIHGQ 87 (176)
Q Consensus 13 ~~~i~i~G~~~~GKttl~~~~~~~--~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~ 87 (176)
.+||+++|++|||||||++++..+ .+...+.++.|.++....... ++..+.+.+|||+|++.+...+..++++++
T Consensus 2 ~~kv~ivG~~gvGKStLl~~l~~~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ 81 (184)
T 2zej_A 2 RMKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGREEFYSTHPHFMTQRA 81 (184)
T ss_dssp -CEEEEESCTTSSHHHHHHHHTCC-----------CSEEEEEEEC---------CEEEEEEECSHHHHHTTSHHHHHHSE
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCccCCCcceeccEEeEEeeeccccCCCCceEEEEEecCCCHHHHHhhHHHccCCc
Confidence 589999999999999999998874 455556778887776655433 235678999999999999999999999999
Q ss_pred EEEEEEeCCCh-hhhhhHHHHHHHHhhhcCCCCEEEEEeCCCCCccccC-----HHHHHHHHHcCCe----EEEeccCCC
Q 030504 88 CAIIMFDVTAR-LTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVK-----AKQVTFHRKKNLQ----YYEISAKSN 157 (176)
Q Consensus 88 ~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~~~~~~-----~~~~~~~~~~~~~----~~~~S~~~~ 157 (176)
++++|||++++ .+++.+..|+..+....++.|+++|+||+|+...... .....+++..+++ ++++||+++
T Consensus 82 ~~i~v~d~~~~~~s~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 161 (184)
T 2zej_A 82 LYLAVYDLSKGQAEVDAMKPWLFNIKARASSSPVILVGTHLDVSDEKQRKACMSKITKELLNKRGFPAIRDYHFVNATEE 161 (184)
T ss_dssp EEEEEEEGGGCHHHHHTHHHHHHHHHHHCTTCEEEEEEECGGGCCHHHHHHHHHHHHHHTTTCTTSCEEEEEEECCTTSC
T ss_pred EEEEEEeCCcchhHHHHHHHHHHHHHhhCCCCcEEEEEECCCcccchhhHHHHHHHHHHHHHhcCCcchhheEEEecccC
Confidence 99999999997 5889999999888776678999999999999764332 1223455556776 999999999
Q ss_pred C-ChHHHHHHHHHHHhcCC
Q 030504 158 Y-NFEKPFLYLARKLAGST 175 (176)
Q Consensus 158 ~-~v~~~~~~l~~~i~~~~ 175 (176)
. +++++++.+.+.+.+.+
T Consensus 162 ~~~~~~l~~~i~~~~~~~~ 180 (184)
T 2zej_A 162 SDALAKLRKTIINESLNFK 180 (184)
T ss_dssp CHHHHHHHHHHHHHHHCC-
T ss_pred chhHHHHHHHHHHHHhccc
Confidence 7 99999999999887654
|
| >3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-33 Score=187.03 Aligned_cols=162 Identities=14% Similarity=0.138 Sum_probs=120.3
Q ss_pred CCCCCeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEec-CcEEEEEEEeCCCcccccccc---cccc
Q 030504 8 TVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTN-CGKIRFYCWDTAGQEKFGGLR---DGYY 83 (176)
Q Consensus 8 ~~~~~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~D~~g~~~~~~~~---~~~~ 83 (176)
..+...+||+++|.+|||||||++++ .+.+..........+......... +..+.+.+|||+|++.+.... ..++
T Consensus 15 ~~~~~~~ki~~vG~~~vGKTsLi~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~ 93 (196)
T 3llu_A 15 YFQGSKPRILLMGLRRSGKSSIQKVV-FHKMSPNETLFLESTNKIYKDDISNSSFVNFQIWDFPGQMDFFDPTFDYEMIF 93 (196)
T ss_dssp -----CCEEEEEESTTSSHHHHHHHH-HSCCCGGGGGGCCCCCSCEEEEECCTTSCCEEEEECCSSCCTTCTTCCHHHHH
T ss_pred cccCcceEEEEECCCCCCHHHHHHHH-HhcCCCcceeeeccccceeeeeccCCCeeEEEEEECCCCHHHHhhhhhccccc
Confidence 45567899999999999999999974 455544433222222223333332 567889999999999987765 7899
Q ss_pred ccccEEEEEEeCCCh--hhhhhHHHHHHHHhhhcCCCCEEEEEeCCCCCccc--------c-CHHHHHHHH----HcCCe
Q 030504 84 IHGQCAIIMFDVTAR--LTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQ--------V-KAKQVTFHR----KKNLQ 148 (176)
Q Consensus 84 ~~~~~~i~v~d~~~~--~s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~~~~--------~-~~~~~~~~~----~~~~~ 148 (176)
+++|++++|||++++ .+++.+..|+..+....++.|+++|+||+|+.... . ......+++ ..+++
T Consensus 94 ~~~~~~i~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 173 (196)
T 3llu_A 94 RGTGALIYVIDAQDDYMEALTRLHITVSKAYKVNPDMNFEVFIHKVDGLSDDHKIETQRDIHQRANDDLADAGLEKLHLS 173 (196)
T ss_dssp HTCSEEEEEEETTSCCHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHHTTCTTSCEE
T ss_pred ccCCEEEEEEECCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeccccCchhhhhHHHhHHHHHHHHHHHHhhhhcCCcc
Confidence 999999999999997 66677777777776566799999999999986521 1 112345566 67889
Q ss_pred EEEeccCCCCChHHHHHHHHHHH
Q 030504 149 YYEISAKSNYNFEKPFLYLARKL 171 (176)
Q Consensus 149 ~~~~S~~~~~~v~~~~~~l~~~i 171 (176)
+++|||++ .|++++|.++++.+
T Consensus 174 ~~e~Sa~~-~~v~~~f~~l~~~l 195 (196)
T 3llu_A 174 FYLTSIYD-HSIFEAFSKVVQKL 195 (196)
T ss_dssp EEEECTTS-THHHHHHHHHHHHT
T ss_pred eEEEEech-hhHHHHHHHHHHHh
Confidence 99999999 99999999999876
|
| >2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.1e-32 Score=194.48 Aligned_cols=163 Identities=25% Similarity=0.443 Sum_probs=139.4
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccccccccccEEEE
Q 030504 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAII 91 (176)
Q Consensus 12 ~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~ 91 (176)
..+||+++|.+|+|||||++++..+.+...+.++.+... ...+..++..+.+.+|||||++.+...+..+++.+|++++
T Consensus 154 ~~~~i~i~G~~~~GKssli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~ 232 (332)
T 2wkq_A 154 ELIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLI 232 (332)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHSCCCCSCCCCSEEEE-EEEEEETTEEEEEEEEEECCCGGGTTTGGGGCTTCSEEEE
T ss_pred ceeEEEEECCCCCChHHHHHHHHhCCCCcccCCccccee-EEEEEECCEEEEEEEEeCCCchhhhHHHHHhccCCCEEEE
Confidence 568999999999999999999999988878788876444 4455677788899999999999999999999999999999
Q ss_pred EEeCCChhhhhhHH-HHHHHHhhhcCCCCEEEEEeCCCCCcc-------------c-cCHHHHHHHHHcCC-eEEEeccC
Q 030504 92 MFDVTARLTYKNVP-TWHRDLCRVCENIPIVLCGNKVDVKNR-------------Q-VKAKQVTFHRKKNL-QYYEISAK 155 (176)
Q Consensus 92 v~d~~~~~s~~~~~-~~~~~~~~~~~~~p~liv~nK~Dl~~~-------------~-~~~~~~~~~~~~~~-~~~~~S~~ 155 (176)
|||++++.+++.+. .|+..+....++.|+++|+||+|+... . ...+...+++..++ ++++|||+
T Consensus 233 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~ 312 (332)
T 2wkq_A 233 CFSLVSPASFHHVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSAL 312 (332)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHHCTTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCTT
T ss_pred EEeCCCHHHHHHHHHHHHHHHHhhCCCCcEEEEEEchhcccccchhhhccccccccccHHHHHHHHHHcCCcEEEEecCC
Confidence 99999999999887 688888777679999999999998642 1 22345677888887 99999999
Q ss_pred CCCChHHHHHHHHHHHhcCC
Q 030504 156 SNYNFEKPFLYLARKLAGST 175 (176)
Q Consensus 156 ~~~~v~~~~~~l~~~i~~~~ 175 (176)
+|.|++++|+++++.+.+.+
T Consensus 313 ~~~gi~~l~~~l~~~~~~~~ 332 (332)
T 2wkq_A 313 TQRGLKTVFDEAIRAVLCPP 332 (332)
T ss_dssp TCTTHHHHHHHHHHHHHC--
T ss_pred CCcCHHHHHHHHHHHHhcCC
Confidence 99999999999999987653
|
| >3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-32 Score=194.56 Aligned_cols=160 Identities=23% Similarity=0.312 Sum_probs=122.4
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccccccccccEEE
Q 030504 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (176)
Q Consensus 11 ~~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 90 (176)
.+.+||+|+|.+|+|||||++++..+.+... .+|.+..... ++...+.+.+|||||++.+...+..+++.+|++|
T Consensus 163 ~~~~kI~ivG~~~vGKSsLl~~l~~~~~~~~-~pT~~~~~~~----~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~vi 237 (329)
T 3o47_A 163 KKEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVET----VEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLI 237 (329)
T ss_dssp CCSEEEEEEESTTSSHHHHHHHTCSSCCEEE-EEETTEEEEE----EEETTEEEEEEECC-----CCSHHHHHTTEEEEE
T ss_pred cCcceEEEECCCCccHHHHHHHHhCCCCCCc-ccccceEEEE----EecCcEEEEEEECCCCHhHHHHHHHHhccCCEEE
Confidence 3568999999999999999999888876544 3555544433 2335678999999999999999999999999999
Q ss_pred EEEeCCChhhhhhHHHHHHHHhhhc--CCCCEEEEEeCCCCCccccCHHHHHHH-----HHcCCeEEEeccCCCCChHHH
Q 030504 91 IMFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNRQVKAKQVTFH-----RKKNLQYYEISAKSNYNFEKP 163 (176)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~liv~nK~Dl~~~~~~~~~~~~~-----~~~~~~~~~~S~~~~~~v~~~ 163 (176)
+|||++++.+++.+..|+..+.... ++.|+++|+||+|+.+.....+..... ...+++++++||++|.|++++
T Consensus 238 lV~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~vSAk~g~gi~el 317 (329)
T 3o47_A 238 FVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEG 317 (329)
T ss_dssp EEEETTCSSSHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTCTTCCSSCEEEEECBTTTTBTHHHH
T ss_pred EEEECCchHHHHHHHHHHHHHHhhhccCCCeEEEEEECccCCcccCHHHHHHHhchhhhhcCCCEEEEEECCCCcCHHHH
Confidence 9999999999999887777665443 589999999999998654333322221 223568999999999999999
Q ss_pred HHHHHHHHhcCC
Q 030504 164 FLYLARKLAGST 175 (176)
Q Consensus 164 ~~~l~~~i~~~~ 175 (176)
|++|++.+.+++
T Consensus 318 ~~~l~~~l~~~k 329 (329)
T 3o47_A 318 LDWLSNQLRNQK 329 (329)
T ss_dssp HHHHHHHHTC--
T ss_pred HHHHHHHHHhcC
Confidence 999999988764
|
| >2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.7e-31 Score=176.06 Aligned_cols=162 Identities=33% Similarity=0.571 Sum_probs=139.0
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccccccccccEEEE
Q 030504 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAII 91 (176)
Q Consensus 12 ~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~ 91 (176)
..+||+++|++|||||||++++.+..+...+.++.|.+.....+.+++..+.+.+||++|++.++..+..+++.++++++
T Consensus 4 ~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i~ 83 (199)
T 2f9l_A 4 YLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGALL 83 (199)
T ss_dssp EEEEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCCCHHHHTTCSEEEE
T ss_pred ceEEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHHhcCCEEEE
Confidence 46899999999999999999999988887778888888877788888888999999999999998888889999999999
Q ss_pred EEeCCChhhhhhHHHHHHHHhhhc-CCCCEEEEEeCCCCCccc--cCHHHHHHHHHcCCeEEEeccCCCCChHHHHHHHH
Q 030504 92 MFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNRQ--VKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLA 168 (176)
Q Consensus 92 v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~liv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l~ 168 (176)
|+|+++..+++.+..|+..+.... .+.|+++++||+|+.... ...+...++...++.++++|++++.|++++|+++.
T Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l~~~~~~~~~d~Sal~~~~i~~l~~~l~ 163 (199)
T 2f9l_A 84 VYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNIL 163 (199)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHH
T ss_pred EEECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECcccccccCcCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHH
Confidence 999999999999888887776543 478999999999997532 23456688888899999999999999999999999
Q ss_pred HHHhc
Q 030504 169 RKLAG 173 (176)
Q Consensus 169 ~~i~~ 173 (176)
+.+.+
T Consensus 164 ~~~~~ 168 (199)
T 2f9l_A 164 TEIYR 168 (199)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 88754
|
| >3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.8e-35 Score=197.03 Aligned_cols=160 Identities=27% Similarity=0.475 Sum_probs=133.9
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccccccccccEEE
Q 030504 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (176)
Q Consensus 11 ~~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 90 (176)
...+||+++|.+|+|||||++++..+.+...+.++.+... ......++..+.+.+|||||++.+...+..+++++|+++
T Consensus 28 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii 106 (204)
T 3th5_A 28 GQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFL 106 (204)
Confidence 4679999999999999999999998888777777765433 334455667788999999999999999999999999999
Q ss_pred EEEeCCChhhhhhHH-HHHHHHhhhcCCCCEEEEEeCCCCCccc--------------cCHHHHHHHHHcCC-eEEEecc
Q 030504 91 IMFDVTARLTYKNVP-TWHRDLCRVCENIPIVLCGNKVDVKNRQ--------------VKAKQVTFHRKKNL-QYYEISA 154 (176)
Q Consensus 91 ~v~d~~~~~s~~~~~-~~~~~~~~~~~~~p~liv~nK~Dl~~~~--------------~~~~~~~~~~~~~~-~~~~~S~ 154 (176)
+|||++++.+++.+. .|+..+....++.|+++|+||+|+.... ...+...+++..++ +++++||
T Consensus 107 lv~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~vSA 186 (204)
T 3th5_A 107 ICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSA 186 (204)
Confidence 999999999999887 7887777666689999999999997532 12334466777777 8999999
Q ss_pred CCCCChHHHHHHHHHHH
Q 030504 155 KSNYNFEKPFLYLARKL 171 (176)
Q Consensus 155 ~~~~~v~~~~~~l~~~i 171 (176)
++|.|++++|+++++.+
T Consensus 187 ~~g~gi~~l~~~l~~~i 203 (204)
T 3th5_A 187 LTQRGLKTVFDEAIRAV 203 (204)
Confidence 99999999999998865
|
| >3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.6e-33 Score=191.58 Aligned_cols=166 Identities=20% Similarity=0.262 Sum_probs=125.7
Q ss_pred CCCCCCeeEEEEEcCC---------CCcHHHHHHHHhc---CCCCCccccce-eEEEeEEEE--------------EecC
Q 030504 7 QTVDYPSFKLVIVGDG---------GTGKTTFVKRHLT---GEFEKKYEPTI-GVEVHPLDF--------------FTNC 59 (176)
Q Consensus 7 ~~~~~~~~~i~i~G~~---------~~GKttl~~~~~~---~~~~~~~~~~~-~~~~~~~~~--------------~~~~ 59 (176)
++.....+||+++|.+ |||||||+++|.. +.+...+.++. +.++....+ ..++
T Consensus 13 ~~~~~~~~ki~lvG~~~~~~~~~~~~vGKSsLi~~l~~~~~~~~~~~~~~t~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 92 (255)
T 3c5h_A 13 NLYFQGTYNISVVGLSGTEKEKGQCGIGKSCLCNRFVRPSADEFHLDHTSVLSTSDFGGRVVNNDHFLYWGEVSRSLEDC 92 (255)
T ss_dssp TSSCCSCEEEEEEESCCCTTTTTTCCCSHHHHHHHHHCCSTTTCCSCCCCEECHHHHTSTTTTTCSEEEEEEEC------
T ss_pred CCCCCceeEEEEECCCccccccCCCCcCHHHHHHHHHhccCCccccccCCcccccccceeEeecccccccccccccccCC
Confidence 3445678999999999 9999999999998 55655555554 333222211 1345
Q ss_pred cEEEEEEEe-----------------------CCCccccccccccccc---------------------cccEEEEEEeC
Q 030504 60 GKIRFYCWD-----------------------TAGQEKFGGLRDGYYI---------------------HGQCAIIMFDV 95 (176)
Q Consensus 60 ~~~~~~~~D-----------------------~~g~~~~~~~~~~~~~---------------------~~~~~i~v~d~ 95 (176)
..+.+.+|| ++|++++...+..+++ ++|++|+|||+
T Consensus 93 ~~~~l~i~D~~~~~D~~~~~~~~~~~~~~~~~~~g~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vilV~D~ 172 (255)
T 3c5h_A 93 VECKMHIVEQTEFIDDQTFQPHRSTALQPYIKRAAATKLASAEKLMYFCTDQLGLEQDFEQKQMPDGKLLVDGFLLGIDV 172 (255)
T ss_dssp ---CEEEEEECCCEETTTCSBTTGGGCCCHHHHHTCSEEECTTCBCCCCGGGTTCGGGSCCCBCGGGEEECCEEEEEEEC
T ss_pred cEEEEEEEEccccccccccccccccccccccccchhhhhhhhhhhhhhccccccccccccccccccccccCCEEEEEEEC
Confidence 678899999 6778888888888887 79999999999
Q ss_pred CCh--hhhhhHHHHHHHHhhh--cCCCCEEEEEeCCCCCccccCHHHHHHHHH-cCCeEEEeccCCCCChHHHHHHHHHH
Q 030504 96 TAR--LTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVTFHRK-KNLQYYEISAKSNYNFEKPFLYLARK 170 (176)
Q Consensus 96 ~~~--~s~~~~~~~~~~~~~~--~~~~p~liv~nK~Dl~~~~~~~~~~~~~~~-~~~~~~~~S~~~~~~v~~~~~~l~~~ 170 (176)
+++ .+++.+..|+..+... .++.|+++|+||+|+.......+...+++. .+++++++||+++.|++++|++|++.
T Consensus 173 t~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~e~SAk~g~gv~elf~~l~~~ 252 (255)
T 3c5h_A 173 SRGMNRNFDDQLKFVSNLYNQLAKTKKPIVVVLTKCDEGVERYIRDAHTFALSKKNLQVVETSARSNVNVDLAFSTLVQL 252 (255)
T ss_dssp BC----CHHHHHHHHHHHHHHHHHTTCCEEEEEECGGGBCHHHHHHHHHHHHTSSSCCEEECBTTTTBSHHHHHHHHHHH
T ss_pred CCCchhhHHHHHHHHHHHHHHhccCCCCEEEEEEcccccccHHHHHHHHHHHhcCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 998 8999999998888654 368999999999999764433556667766 48899999999999999999999988
Q ss_pred Hh
Q 030504 171 LA 172 (176)
Q Consensus 171 i~ 172 (176)
+.
T Consensus 253 l~ 254 (255)
T 3c5h_A 253 ID 254 (255)
T ss_dssp HH
T ss_pred hc
Confidence 75
|
| >1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B* | Back alignment and structure |
|---|
Probab=99.98 E-value=1.7e-30 Score=172.76 Aligned_cols=160 Identities=32% Similarity=0.569 Sum_probs=140.7
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccccccccccEEEE
Q 030504 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAII 91 (176)
Q Consensus 12 ~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~ 91 (176)
..++|+++|++|||||||++++....+...+.++.+.++....+.+++..+.+.+||++|++++...+..+++.++++++
T Consensus 28 ~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i~ 107 (191)
T 1oix_A 28 YLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRGAVGALL 107 (191)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEEEEEEEEECSCCSSSCCCHHHHTTCCEEEE
T ss_pred cceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEECCCCcchhhhhHHHhhcCCEEEE
Confidence 46899999999999999999999988888888999988888888888888899999999999999999999999999999
Q ss_pred EEeCCChhhhhhHHHHHHHHhhhc-CCCCEEEEEeCCCCCccc--cCHHHHHHHHHcCCeEEEeccCCCCChHHHHHHHH
Q 030504 92 MFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNRQ--VKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLA 168 (176)
Q Consensus 92 v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~liv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l~ 168 (176)
|+|.++..+++.+..|+..+.... .+.|+++++||+|+.... .......++...++.++++|++++.|++++|+++.
T Consensus 108 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l~~~~~~~~ld~Sald~~~v~~l~~~l~ 187 (191)
T 1oix_A 108 VYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTIL 187 (191)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHH
T ss_pred EEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHH
Confidence 999999999998888887765543 478999999999997532 23456788888899999999999999999999999
Q ss_pred HHH
Q 030504 169 RKL 171 (176)
Q Consensus 169 ~~i 171 (176)
+.+
T Consensus 188 ~~i 190 (191)
T 1oix_A 188 TEI 190 (191)
T ss_dssp HHH
T ss_pred HHh
Confidence 876
|
| >2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A* | Back alignment and structure |
|---|
Probab=99.98 E-value=2.7e-31 Score=172.72 Aligned_cols=154 Identities=17% Similarity=0.199 Sum_probs=113.2
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCcccccc------ccccccc-
Q 030504 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGG------LRDGYYI- 84 (176)
Q Consensus 12 ~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~------~~~~~~~- 84 (176)
+.++|+++|++|||||||++++.+..+.....++.+.+.....+..+ ...+.+|||||++.+.. ....+++
T Consensus 2 ~~~~v~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~--~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~~ 79 (165)
T 2wji_A 2 KSYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYN--GEKFKVVDLPGVYSLTANSIDEIIARDYIIN 79 (165)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHCCSSSCC-----CCCCCEEEEEET--TEEEEEEECCCCSCSSSSSHHHHHHHHHHHH
T ss_pred CccEEEEECCCCCCHHHHHHHHhCCCeeccCCCCcceeeeEEEEEEC--CcEEEEEECCCcccCCCcchhHHHHHHHHhc
Confidence 46899999999999999999988766644433433333333333333 35789999999987653 2345554
Q ss_pred -cccEEEEEEeCCChhhhhhHHHHHHHHhhhcCCCCEEEEEeCCCCCcc-ccCHHHHHHHHHcCCeEEEeccCCCCChHH
Q 030504 85 -HGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNR-QVKAKQVTFHRKKNLQYYEISAKSNYNFEK 162 (176)
Q Consensus 85 -~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~~~-~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~ 162 (176)
+++++++|+|+++... ...|+..+.+. +.|+++|+||+|+... ....+...+++..+++++++||++|.|+++
T Consensus 80 ~~~~~~i~v~D~~~~~~---~~~~~~~~~~~--~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~~v~~ 154 (165)
T 2wji_A 80 EKPDLVVNIVDATALER---NLYLTLQLMEM--GANLLLALNKMDLAKSLGIEIDVDKLEKILGVKVVPLSAAKKMGIEE 154 (165)
T ss_dssp HCCSEEEEEEETTCHHH---HHHHHHHHHHT--TCCEEEEEECHHHHHHTTCCCCHHHHHHHHTSCEEECBGGGTBSHHH
T ss_pred CCCCEEEEEecCCchhH---hHHHHHHHHhc--CCCEEEEEEchHhccccChhhHHHHHHHHhCCCEEEEEcCCCCCHHH
Confidence 7999999999988543 34466665543 8999999999998653 233345677788899999999999999999
Q ss_pred HHHHHHHHHh
Q 030504 163 PFLYLARKLA 172 (176)
Q Consensus 163 ~~~~l~~~i~ 172 (176)
+|+++++.+.
T Consensus 155 l~~~l~~~~~ 164 (165)
T 2wji_A 155 LKKAISIAVK 164 (165)
T ss_dssp HHHHHHHHTT
T ss_pred HHHHHHHHhh
Confidence 9999998764
|
| >2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2 | Back alignment and structure |
|---|
Probab=99.97 E-value=4.7e-31 Score=178.26 Aligned_cols=158 Identities=18% Similarity=0.188 Sum_probs=113.8
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCc-EEEEEEEeCCCcccccc-ccccccccccE
Q 030504 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG-KIRFYCWDTAGQEKFGG-LRDGYYIHGQC 88 (176)
Q Consensus 11 ~~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~D~~g~~~~~~-~~~~~~~~~~~ 88 (176)
.+.+||+++|.+|||||||++++..+.+...+.++. ..... +..++. .+.+.+|||||++.+.. .+..+++.+|+
T Consensus 5 ~~~~ki~vvG~~~~GKTsli~~l~~~~~~~~~~~~~-~~~~~--~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ 81 (214)
T 2fh5_B 5 SSQRAVLFVGLCDSGKTLLFVRLLTGQYRDTQTSIT-DSSAI--YKVNNNRGNSLTLIDLPGHESLRFQLLDRFKSSARA 81 (214)
T ss_dssp ---CEEEEECSTTSSHHHHHHHHHHSCCCCBCCCCS-CEEEE--EECSSTTCCEEEEEECCCCHHHHHHHHHHHGGGEEE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCcccccCCcc-eeeEE--EEecCCCccEEEEEECCCChhHHHHHHHHHHhhCCE
Confidence 467999999999999999999999998877765443 23332 444443 68899999999999887 78888999999
Q ss_pred EEEEEeCCChh-hhhhHHHHHH-HHhhh---cCCCCEEEEEeCCCCCccccCHHHHHH----------------------
Q 030504 89 AIIMFDVTARL-TYKNVPTWHR-DLCRV---CENIPIVLCGNKVDVKNRQVKAKQVTF---------------------- 141 (176)
Q Consensus 89 ~i~v~d~~~~~-s~~~~~~~~~-~~~~~---~~~~p~liv~nK~Dl~~~~~~~~~~~~---------------------- 141 (176)
+++|||+++.. ++.....++. .+... ..+.|+++|+||+|+..........+.
T Consensus 82 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~s~~~~~ 161 (214)
T 2fh5_B 82 VVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAKSAKLIQQQLEKELNTLRVTRSAAPSTLDSS 161 (214)
T ss_dssp EEEEEETTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHHHCC---------
T ss_pred EEEEEECCCcCHHHHHHHHHHHHHHhhhhhcccCCCEEEEEECCCCCCcccHHHHHHHHHHHHHHHhccchhccccccCC
Confidence 99999999854 4555554433 33321 247899999999999764322211111
Q ss_pred --------------HH-Hc--CCeEEEeccCCC------CChHHHHHHHHHHH
Q 030504 142 --------------HR-KK--NLQYYEISAKSN------YNFEKPFLYLARKL 171 (176)
Q Consensus 142 --------------~~-~~--~~~~~~~S~~~~------~~v~~~~~~l~~~i 171 (176)
+. .. ++.|++|||++| .|++++|+||++.+
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~SAk~g~~~~~~~gv~~lf~~l~~~~ 214 (214)
T 2fh5_B 162 STAPAQLGKKGKEFEFSQLPLKVEFLECSAKGGRGDTGSADIQDLEKWLAKIA 214 (214)
T ss_dssp ---CCCSSCTTSCCCGGGSSSCEEEEECBCC-------CCBCHHHHHHHHHHC
T ss_pred ccccccccCCCCCcccccCCCcEEEEEeeccCCCccccccChHHHHHHHHHhC
Confidence 01 11 678999999999 99999999998753
|
| >2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=1.1e-30 Score=171.50 Aligned_cols=159 Identities=16% Similarity=0.136 Sum_probs=118.0
Q ss_pred CCCCeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccccccccccE
Q 030504 9 VDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQC 88 (176)
Q Consensus 9 ~~~~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~ 88 (176)
...+.++|+++|.+|||||||++++..+.+...+.++.+.+.....+..++ ..+.+|||||++.+...+..++..+|+
T Consensus 4 ~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 81 (178)
T 2lkc_A 4 MVERPPVVTIMGHVDHGKTTLLDAIRHSKVTEQEAGGITQHIGAYQVTVND--KKITFLDTPGHEAFTTMRARGAQVTDI 81 (178)
T ss_dssp TCCCCCEEEEESCTTTTHHHHHHHHHTTCSSCSSCCSSSTTCCCCEEEETT--EEEEESCCCSSSSSSCSCCSSCCCCCE
T ss_pred cCCCCCEEEEECCCCCCHHHHHHHHhCCccccCCCCceeEeeeEEEEEeCC--ceEEEEECCCCHHHHHHHHHHHhhCCE
Confidence 445789999999999999999999998888766555554444444444544 457799999999999999999999999
Q ss_pred EEEEEeCCChhhhhhHHHHHHHHhhhcCCCCEEEEEeCCCCCccccCHHHHHHHHH-------cC--CeEEEeccCCCCC
Q 030504 89 AIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRK-------KN--LQYYEISAKSNYN 159 (176)
Q Consensus 89 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~~~~~~~~~~~~~~~-------~~--~~~~~~S~~~~~~ 159 (176)
+++|+|++++...+.. .++..+.. .+.|+++|+||+|+..... .+....... .+ ++++++||++|.|
T Consensus 82 ~i~v~d~~~~~~~~~~-~~l~~~~~--~~~p~ilv~nK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g 157 (178)
T 2lkc_A 82 VILVVAADDGVMPQTV-EAINHAKA--ANVPIIVAINKMDKPEANP-DRVMQELMEYNLVPEEWGGDTIFCKLSAKTKEG 157 (178)
T ss_dssp EEEEEETTCCCCHHHH-HHHHHHGG--GSCCEEEEEETTTSSCSCH-HHHHHHHTTTTCCBTTTTSSEEEEECCSSSSHH
T ss_pred EEEEEECCCCCcHHHH-HHHHHHHh--CCCCEEEEEECccCCcCCH-HHHHHHHHhcCcChhHcCCcccEEEEecCCCCC
Confidence 9999999885322222 22233332 3899999999999976421 122222222 12 5899999999999
Q ss_pred hHHHHHHHHHHHhc
Q 030504 160 FEKPFLYLARKLAG 173 (176)
Q Consensus 160 v~~~~~~l~~~i~~ 173 (176)
++++|++|++.+..
T Consensus 158 v~~l~~~l~~~~~~ 171 (178)
T 2lkc_A 158 LDHLLEMILLVSEM 171 (178)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhh
Confidence 99999999987654
|
| >2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.97 E-value=2e-30 Score=176.89 Aligned_cols=164 Identities=12% Similarity=0.085 Sum_probs=113.8
Q ss_pred CCCCCeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccc---------cc
Q 030504 8 TVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFG---------GL 78 (176)
Q Consensus 8 ~~~~~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~---------~~ 78 (176)
..+...++|+++|.+|||||||+++++.+.+... +..+.+..............+.+|||||+.... ..
T Consensus 24 ~~~~~~~kI~vvG~~~vGKSsLin~l~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~ 101 (228)
T 2qu8_A 24 SINPHKKTIILSGAPNVGKSSFMNIVSRANVDVQ--SYSFTTKNLYVGHFDHKLNKYQIIDTPGLLDRAFENRNTIEMTT 101 (228)
T ss_dssp SCCTTSEEEEEECSTTSSHHHHHHHHTTTCEEEE--CC-----CEEEEEEEETTEEEEEEECTTTTTSCGGGCCHHHHHH
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHhCCCCccC--CCCCcceeeeeeeeecCCCeEEEEECCCCcCcccchhhhHHHHH
Confidence 3445789999999999999999999988776422 222222222222222234689999999983211 11
Q ss_pred cccccccccEEEEEEeCCChhhhhh--HHHHHHHHhhhcCCCCEEEEEeCCCCCccc-cCH----HHHHHHHHcC--CeE
Q 030504 79 RDGYYIHGQCAIIMFDVTARLTYKN--VPTWHRDLCRVCENIPIVLCGNKVDVKNRQ-VKA----KQVTFHRKKN--LQY 149 (176)
Q Consensus 79 ~~~~~~~~~~~i~v~d~~~~~s~~~--~~~~~~~~~~~~~~~p~liv~nK~Dl~~~~-~~~----~~~~~~~~~~--~~~ 149 (176)
+..++..+|++++|||++++.+++. ...|+..+....++.|+++|+||+|+.... ... ....++...+ +++
T Consensus 102 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (228)
T 2qu8_A 102 ITALAHINGVILFIIDISEQCGLTIKEQINLFYSIKSVFSNKSIVIGFNKIDKCNMDSLSIDNKLLIKQILDNVKNPIKF 181 (228)
T ss_dssp HHHHHTSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTCC-CCCEEEEEECGGGCC--CCCHHHHHHHHHHHHHCCSCEEE
T ss_pred HHHhhccccEEEEEEecccccCcchHHHHHHHHHHHHhhcCCcEEEEEeCcccCCchhhHHHHHHHHHHHHHhcCCCceE
Confidence 2334677899999999999887752 234555555544689999999999997533 222 2345666666 899
Q ss_pred EEeccCCCCChHHHHHHHHHHHhc
Q 030504 150 YEISAKSNYNFEKPFLYLARKLAG 173 (176)
Q Consensus 150 ~~~S~~~~~~v~~~~~~l~~~i~~ 173 (176)
+++||++|.|++++|++|++.+.+
T Consensus 182 ~~~SA~~g~gi~~l~~~l~~~i~~ 205 (228)
T 2qu8_A 182 SSFSTLTGVGVEQAKITACELLKN 205 (228)
T ss_dssp EECCTTTCTTHHHHHHHHHHHHHH
T ss_pred EEEecccCCCHHHHHHHHHHHHHH
Confidence 999999999999999999998764
|
| >3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B* | Back alignment and structure |
|---|
Probab=99.97 E-value=1.9e-31 Score=187.83 Aligned_cols=154 Identities=14% Similarity=0.128 Sum_probs=114.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCC---ccccceeEEEeEEEEEecCcEEEEEEEeCCCcccccc---ccccccccccE
Q 030504 15 KLVIVGDGGTGKTTFVKRHLTGEFEK---KYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGG---LRDGYYIHGQC 88 (176)
Q Consensus 15 ~i~i~G~~~~GKttl~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~---~~~~~~~~~~~ 88 (176)
||+++|..|||||||++++..+.... .+.+|.|.+.... +..+++++|||+|++++.. .+..+++++++
T Consensus 1 KIvllGdsgvGKTSLl~~~~~~~~~~~~~~~~~Tig~~~~~v-----~~~v~LqIWDTAGQErf~~~~l~~~~yyr~a~~ 75 (331)
T 3r7w_B 1 MVLLMGVRRCGKSSICKVVFHNMQPLDTLYLESTSNPSLEHF-----STLIDLAVMELPGQLNYFEPSYDSERLFKSVGA 75 (331)
T ss_dssp CEEEECSTTSSTTHHHHHHHSCCCSGGGTTCCCCCSCCCEEE-----CSSSCEEEEECCSCSSSCCCSHHHHHHHTTCSE
T ss_pred CEEEECCCCCCHHHHHHHHHcCCCCCccceecCeeeeeeEEE-----ccEEEEEEEECCCchhccchhhhhhhhccCCCE
Confidence 79999999999999999866554322 2456777665432 2457899999999999974 36889999999
Q ss_pred EEEEEeCCCh--hhhhhHHHHHHHHhhhcCCCCEEEEEeCCCCCccc--------cCH-HHHHHHHH----cCCeEEEec
Q 030504 89 AIIMFDVTAR--LTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQ--------VKA-KQVTFHRK----KNLQYYEIS 153 (176)
Q Consensus 89 ~i~v~d~~~~--~s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~~~~--------~~~-~~~~~~~~----~~~~~~~~S 153 (176)
+|+|||++++ ...+....|+..+.+..++.|+++++||+|+.... +.. +..++++. .++.|++||
T Consensus 76 ~IlV~Ditd~~~~~~~~l~~~l~~~~~~~~~ipillvgNK~DL~~~~~R~~~~R~V~~~~~~~la~~~~~~~~i~f~eTS 155 (331)
T 3r7w_B 76 LVYVIDSQDEYINAITNLAMIIEYAYKVNPSINIEVLIHKVDGLSEDFKVDAQRDIMQRTGEELLELGLDGVQVSFYLTS 155 (331)
T ss_dssp EEEECCCSSCTTHHHHHHHHHHHHHHHHCTTCEEEEECCCCCSSCSHHHHHHHHHHHHHHHHTTSSSSCSCCCEEEECCC
T ss_pred EEEEEECCchHHHHHHHHHHHHHHHhhcCCCCcEEEEEECcccCchhhhhhHHHHhhHHHHHHHHhhcccccCceEEEec
Confidence 9999999998 22233333444444456799999999999997532 111 23355554 578999999
Q ss_pred cCCCCChHHHHHHHHHHHhcC
Q 030504 154 AKSNYNFEKPFLYLARKLAGS 174 (176)
Q Consensus 154 ~~~~~~v~~~~~~l~~~i~~~ 174 (176)
|++ .+|.++|..+++.+..+
T Consensus 156 Akd-~nV~eAFs~iv~~li~~ 175 (331)
T 3r7w_B 156 IFD-HSIYEAFSRIVQKLIPE 175 (331)
T ss_dssp SSS-SHHHHHHHHHHTTSSTT
T ss_pred cCC-CcHHHHHHHHHHHHHhh
Confidence 998 59999999999887643
|
| >2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.97 E-value=5.3e-30 Score=169.78 Aligned_cols=160 Identities=16% Similarity=0.186 Sum_probs=121.1
Q ss_pred CCCCeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccc------cccccc
Q 030504 9 VDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFG------GLRDGY 82 (176)
Q Consensus 9 ~~~~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~------~~~~~~ 82 (176)
.+++.++|+++|++|||||||++++..+.+.....++.+.+.....+..+ +..+.+|||||++.+. ..+..+
T Consensus 3 ~~~~~~~i~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~l~Dt~G~~~~~~~~~~~~~~~~~ 80 (188)
T 2wjg_A 3 SHMKSYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYN--GEKFKVVDLPGVYSLTANSIDEIIARDY 80 (188)
T ss_dssp CCCCEEEEEEECSTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEET--TEEEEEEECCCCSCCSSSSHHHHHHHHH
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHhCCCccccCCCCeeccceEEEEEeC--CcEEEEEECCCcCccccccHHHHHHHHH
Confidence 34578999999999999999999988766544444444444444444443 4778999999998774 234555
Q ss_pred cc--cccEEEEEEeCCChhhhhhHHHHHHHHhhhcCCCCEEEEEeCCCCCcc-ccCHHHHHHHHHcCCeEEEeccCCCCC
Q 030504 83 YI--HGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNR-QVKAKQVTFHRKKNLQYYEISAKSNYN 159 (176)
Q Consensus 83 ~~--~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~~~-~~~~~~~~~~~~~~~~~~~~S~~~~~~ 159 (176)
+. .++++++|+|.++ ++....|+..+.. .+.|+++|+||+|+... ....+...+++..+++++++||+++.|
T Consensus 81 ~~~~~~~~~i~v~d~~~---~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 155 (188)
T 2wjg_A 81 IINEKPDLVVNIVDATA---LERNLYLTLQLME--MGANLLLALNKMDLAKSLGIEIDVDKLEKILGVKVVPLSAAKKMG 155 (188)
T ss_dssp HHHHCCSEEEEEEEGGG---HHHHHHHHHHHHT--TTCCEEEEEECHHHHHHTTCCCCHHHHHHHHTSCEEECBGGGTBS
T ss_pred HhccCCCEEEEEecchh---HHHHHHHHHHHHh--cCCCEEEEEEhhhccccccchHHHHHHHHHhCCCeEEEEecCCCC
Confidence 54 4899999999875 4455566666655 38999999999998753 333456677888899999999999999
Q ss_pred hHHHHHHHHHHHhcCC
Q 030504 160 FEKPFLYLARKLAGST 175 (176)
Q Consensus 160 v~~~~~~l~~~i~~~~ 175 (176)
++++|+++++.+.+..
T Consensus 156 v~~l~~~i~~~~~~~~ 171 (188)
T 2wjg_A 156 IEELKKAISIAVKDKK 171 (188)
T ss_dssp HHHHHHHHHHHHTTC-
T ss_pred HHHHHHHHHHHHHhcc
Confidence 9999999999887653
|
| >3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=8.4e-30 Score=180.58 Aligned_cols=158 Identities=20% Similarity=0.278 Sum_probs=125.2
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHhcCCCC---CccccceeEEEeEEEEEecCcEEEEEEEeCCCcccc-----cccccccc
Q 030504 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFE---KKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKF-----GGLRDGYY 83 (176)
Q Consensus 12 ~~~~i~i~G~~~~GKttl~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~-----~~~~~~~~ 83 (176)
..+||+++|.+|||||||+++++.+... ..+.+|.+....... .. ..+.+.+|||||++.+ ...+..++
T Consensus 2 ~~~KI~lvG~~~vGKSSLi~~l~~~~~~~~~~~~~~Ti~~~~~~~~--~~-~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~ 78 (307)
T 3r7w_A 2 LGSKLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHSHLR--FL-GNMTLNLWDCGGQDVFMENYFTKQKDHIF 78 (307)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHSCCCTGGGGGCCCCCSEEEEEEE--ET-TTEEEEEEEECCSHHHHHHHHTTTHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCccccCcCCccceEEEEEE--eC-CceEEEEEECCCcHHHhhhhhhhHHHHHh
Confidence 5689999999999999999998877332 235556665554433 33 3678999999999988 77888889
Q ss_pred ccccEEEEEEeCCChhhhhhHHHHHHHH---hhhcCCCCEEEEEeCCCCCcc--c------cCHHHHHHHHHcC---CeE
Q 030504 84 IHGQCAIIMFDVTARLTYKNVPTWHRDL---CRVCENIPIVLCGNKVDVKNR--Q------VKAKQVTFHRKKN---LQY 149 (176)
Q Consensus 84 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~---~~~~~~~p~liv~nK~Dl~~~--~------~~~~~~~~~~~~~---~~~ 149 (176)
+++|++++|||++++.+++.+..|...+ ....++.|+++|+||+|+... . ...+...+++.++ +++
T Consensus 79 ~~ad~vi~V~D~t~~~s~~~l~~~~~~l~~l~~~~~~~piilv~NK~Dl~~~~~r~~~~~v~~~~~~~~~~~~g~~~~~~ 158 (307)
T 3r7w_A 79 QMVQVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDAKIFVLLHKMDLVQLDKREELFQIMMKNLSETSSEFGFPNLIG 158 (307)
T ss_dssp TTCSEEEEEEETTCSCHHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHTTTCCSCEE
T ss_pred ccCCEEEEEEECCChhhHHHHHHHHHHHHHHHHhCCCCeEEEEEecccccchhhhhHHHHHHHHHHHHHHHHcCCCCeEE
Confidence 9999999999999999999887665444 444578999999999999762 1 2244567788886 799
Q ss_pred EEeccCCCCChHHHHHHHHHHHhc
Q 030504 150 YEISAKSNYNFEKPFLYLARKLAG 173 (176)
Q Consensus 150 ~~~S~~~~~~v~~~~~~l~~~i~~ 173 (176)
+++||++ .++.++|..+++.+..
T Consensus 159 ~~tSa~~-~~i~e~~~~iv~~li~ 181 (307)
T 3r7w_A 159 FPTSIWD-ESLYKAWSQIVCSLIP 181 (307)
T ss_dssp EECCTTS-SHHHHHHHHHHHTTCS
T ss_pred EEeeecC-ChHHHHHHHHHHHHcC
Confidence 9999999 8999999999886543
|
| >1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=1.1e-29 Score=169.11 Aligned_cols=157 Identities=13% Similarity=0.180 Sum_probs=108.9
Q ss_pred CCCeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCC----------cccccccc
Q 030504 10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAG----------QEKFGGLR 79 (176)
Q Consensus 10 ~~~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g----------~~~~~~~~ 79 (176)
....++|+++|.+|+|||||+++++.+.+...+.++.+.+........+. .+.+||||| ++.+...+
T Consensus 20 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~l~Dt~G~~~~~~~~~~~~~~~~~~ 96 (195)
T 1svi_A 20 EGGLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYIIND---ELHFVDVPGYGFAKVSKSEREAWGRMI 96 (195)
T ss_dssp CSCCCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEEETT---TEEEEECCCBCCCSSCHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCCCCccccCCCCCceeeEEEEEECC---cEEEEECCCCCccccCHHHHHHHHHHH
Confidence 34679999999999999999999988876666677777666655544433 589999999 66666667
Q ss_pred ccccccc---cEEEEEEeCCChhhhhhHHHHHHHHhhhcCCCCEEEEEeCCCCCccccCHHH-HH----HHHHcCCeEEE
Q 030504 80 DGYYIHG---QCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQ-VT----FHRKKNLQYYE 151 (176)
Q Consensus 80 ~~~~~~~---~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~~~~~~~~~-~~----~~~~~~~~~~~ 151 (176)
..+++.+ |++++|+|++++.++.... +...+.. .+.|+++|+||+|+......... .. +....++++++
T Consensus 97 ~~~~~~~~~~~~~i~v~d~~~~~~~~~~~-~~~~~~~--~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (195)
T 1svi_A 97 ETYITTREELKAVVQIVDLRHAPSNDDVQ-MYEFLKY--YGIPVIVIATKADKIPKGKWDKHAKVVRQTLNIDPEDELIL 173 (195)
T ss_dssp HHHHHHCTTEEEEEEEEETTSCCCHHHHH-HHHHHHH--TTCCEEEEEECGGGSCGGGHHHHHHHHHHHHTCCTTSEEEE
T ss_pred HHHHhhhhcCCEEEEEEECCCCCCHHHHH-HHHHHHH--cCCCEEEEEECcccCChHHHHHHHHHHHHHHcccCCCceEE
Confidence 7777766 9999999999876665432 2223333 48999999999999764432221 12 22234679999
Q ss_pred eccCCCCChHHHHHHHHHHHh
Q 030504 152 ISAKSNYNFEKPFLYLARKLA 172 (176)
Q Consensus 152 ~S~~~~~~v~~~~~~l~~~i~ 172 (176)
+||+++.|++++|++|.+.+.
T Consensus 174 ~Sa~~~~gv~~l~~~l~~~l~ 194 (195)
T 1svi_A 174 FSSETKKGKDEAWGAIKKMIN 194 (195)
T ss_dssp CCTTTCTTHHHHHHHHHHHHT
T ss_pred EEccCCCCHHHHHHHHHHHhc
Confidence 999999999999999998875
|
| >3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=2.9e-29 Score=177.84 Aligned_cols=166 Identities=17% Similarity=0.166 Sum_probs=126.4
Q ss_pred CCCCCCeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCc-EEEEEEEeCCCccccc---------
Q 030504 7 QTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG-KIRFYCWDTAGQEKFG--------- 76 (176)
Q Consensus 7 ~~~~~~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~D~~g~~~~~--------- 76 (176)
.+.+++.-.|+++|.+|||||||+|++++..+.. ..+..+++........... ...+.+|||||+....
T Consensus 4 ~~~~~~~g~v~ivG~~nvGKSTLin~l~g~~~~i-~s~~~~tT~~~~~~~~~~~~~~~i~lvDTPG~~~~~~~~~l~~~~ 82 (308)
T 3iev_A 4 HHHHMKVGYVAIVGKPNVGKSTLLNNLLGTKVSI-ISPKAGTTRMRVLGVKNIPNEAQIIFLDTPGIYEPKKSDVLGHSM 82 (308)
T ss_dssp ---CCEEEEEEEECSTTSSHHHHHHHHHTSCCSC-CCSSSCCCCSCEEEEEEETTTEEEEEEECCCCCCCCTTCHHHHHH
T ss_pred CCCCCCCCEEEEECCCCCcHHHHHHHHhCCCccc-cCCCCCceeeEEEEEEecCCCCeEEEEECcCCCccccchhHHHHH
Confidence 4566788999999999999999999988776542 2344444555444444334 6789999999986544
Q ss_pred -cccccccccccEEEEEEeCCChhhhhhHHHHHHHHhhhcCCCCEEEEEeCCCCC-ccccCH-HHHHHHHHcC--CeEEE
Q 030504 77 -GLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVK-NRQVKA-KQVTFHRKKN--LQYYE 151 (176)
Q Consensus 77 -~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~-~~~~~~-~~~~~~~~~~--~~~~~ 151 (176)
.....++..+|++++|+|++++.+.+....|+..+... +.|+++|+||+|+. +..... ....+....+ ..+++
T Consensus 83 ~~~~~~~l~~aD~il~VvD~~~~~~~~~~~~~~~~l~~~--~~pvilV~NK~Dl~~~~~~~~~~~~~l~~~~~~~~~i~~ 160 (308)
T 3iev_A 83 VEIAKQSLEEADVILFMIDATEGWRPRDEEIYQNFIKPL--NKPVIVVINKIDKIGPAKNVLPLIDEIHKKHPELTEIVP 160 (308)
T ss_dssp HHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHTGGG--CCCEEEEEECGGGSSSGGGGHHHHHHHHHHCTTCCCEEE
T ss_pred HHHHHHHhhcCCEEEEEEeCCCCCCchhHHHHHHHHHhc--CCCEEEEEECccCCCCHHHHHHHHHHHHHhccCCCeEEE
Confidence 45566788999999999999988887777777777664 89999999999997 443333 3445566665 78999
Q ss_pred eccCCCCChHHHHHHHHHHHhcCC
Q 030504 152 ISAKSNYNFEKPFLYLARKLAGST 175 (176)
Q Consensus 152 ~S~~~~~~v~~~~~~l~~~i~~~~ 175 (176)
+||++|.|++++|+++.+.+.+.+
T Consensus 161 vSA~~g~gv~~L~~~l~~~l~~~~ 184 (308)
T 3iev_A 161 ISALKGANLDELVKTILKYLPEGE 184 (308)
T ss_dssp CBTTTTBSHHHHHHHHHHHSCBCC
T ss_pred EeCCCCCCHHHHHHHHHHhCccCC
Confidence 999999999999999999887654
|
| >2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.6e-29 Score=163.42 Aligned_cols=149 Identities=21% Similarity=0.176 Sum_probs=102.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEE--eEEEEEecCcEEEEEEEeCCCcccc-------ccccccccc
Q 030504 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEV--HPLDFFTNCGKIRFYCWDTAGQEKF-------GGLRDGYYI 84 (176)
Q Consensus 14 ~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~D~~g~~~~-------~~~~~~~~~ 84 (176)
.||+++|.+|+|||||++++..+.+.. ..+..+.+. .......+ +..+.+|||||++.+ ...+..+++
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~--~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~ 78 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKKRSAV-VADVPGVTRDLKEGVVETD--RGRFLLVDTGGLWSGDKWEKKIQEKVDRALE 78 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHCCC------------CCEEEEEEET--TEEEEEEECGGGCSSSSCCHHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCeee-ccCCCCceecceEEEEEeC--CceEEEEECCCCCCccchHHHHHHHHHHHHH
Confidence 589999999999999999988776431 122222222 23333333 347889999998873 334556788
Q ss_pred cccEEEEEEeCCChhhhhhHHHHHHHHhhhcCCCCEEEEEeCCCCCccccCHHHHHHHHHcCC-eEEEeccCCCCChHHH
Q 030504 85 HGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNL-QYYEISAKSNYNFEKP 163 (176)
Q Consensus 85 ~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~S~~~~~~v~~~ 163 (176)
.+|++++|+|++++.+... ..+...+.. .+.|+++|+||+|+.+.. .+..+++ ..++ +++++||++|.|++++
T Consensus 79 ~~~~~i~v~d~~~~~~~~~-~~~~~~~~~--~~~p~ilv~nK~Dl~~~~--~~~~~~~-~~~~~~~~~~Sa~~~~gv~~l 152 (161)
T 2dyk_A 79 DAEVVLFAVDGRAELTQAD-YEVAEYLRR--KGKPVILVATKVDDPKHE--LYLGPLY-GLGFGDPIPTSSEHARGLEEL 152 (161)
T ss_dssp TCSEEEEEEESSSCCCHHH-HHHHHHHHH--HTCCEEEEEECCCSGGGG--GGCGGGG-GGSSCSCEECBTTTTBSHHHH
T ss_pred hCCEEEEEEECCCcccHhH-HHHHHHHHh--cCCCEEEEEECcccccch--HhHHHHH-hCCCCCeEEEecccCCChHHH
Confidence 9999999999998643321 122222223 389999999999997652 2233444 5677 8999999999999999
Q ss_pred HHHHHHHH
Q 030504 164 FLYLARKL 171 (176)
Q Consensus 164 ~~~l~~~i 171 (176)
|+++++.+
T Consensus 153 ~~~l~~~l 160 (161)
T 2dyk_A 153 LEAIWERL 160 (161)
T ss_dssp HHHHHHHC
T ss_pred HHHHHHhC
Confidence 99999875
|
| >3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A | Back alignment and structure |
|---|
Probab=99.96 E-value=3e-29 Score=173.58 Aligned_cols=155 Identities=13% Similarity=0.098 Sum_probs=118.6
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCcccccccc------cccc-
Q 030504 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLR------DGYY- 83 (176)
Q Consensus 11 ~~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~------~~~~- 83 (176)
.+.++|+++|.+|||||||++++.++.+.....+ |.+.......+......+.+|||||+..+...+ +.++
T Consensus 3 ~~~~kI~lvG~~nvGKTsL~n~l~g~~~~~~~~p--g~tv~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~e~v~~~~~~ 80 (258)
T 3a1s_A 3 LHMVKVALAGCPNVGKTSLFNALTGTKQYVANWP--GVTVEKKEGVFTYKGYTINLIDLPGTYSLGYSSIDEKIARDYLL 80 (258)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHTTCEEEEECT--TSCCEEEEEEEEETTEEEEEEECCCCSSCCSSSHHHHHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHHCCCCcccCCC--CceEEEEEEEEEECCeEEEEEECCCcCccCCCCHHHHHHHHHHh
Confidence 4679999999999999999999887665433333 334444444444445789999999998776533 4555
Q ss_pred -ccccEEEEEEeCCChhhhhhHHHHHHHHhhhcCCCCEEEEEeCCCCCcc-ccCHHHHHHHHHcCCeEEEeccCCCCChH
Q 030504 84 -IHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNR-QVKAKQVTFHRKKNLQYYEISAKSNYNFE 161 (176)
Q Consensus 84 -~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~~~-~~~~~~~~~~~~~~~~~~~~S~~~~~~v~ 161 (176)
..+|++++|+|+++..+. ..|...+.+. +.|+++|+||+|+... ....+...+++.++++++++||++|.|++
T Consensus 81 ~~~~d~ii~V~D~t~~~~~---~~~~~~l~~~--~~pvilv~NK~Dl~~~~~i~~~~~~l~~~lg~~vi~~SA~~g~gi~ 155 (258)
T 3a1s_A 81 KGDADLVILVADSVNPEQS---LYLLLEILEM--EKKVILAMTAIDEAKKTGMKIDRYELQKHLGIPVVFTSSVTGEGLE 155 (258)
T ss_dssp HSCCSEEEEEEETTSCHHH---HHHHHHHHTT--TCCEEEEEECHHHHHHTTCCBCHHHHHHHHCSCEEECCTTTCTTHH
T ss_pred hcCCCEEEEEeCCCchhhH---HHHHHHHHhc--CCCEEEEEECcCCCCccchHHHHHHHHHHcCCCEEEEEeeCCcCHH
Confidence 479999999999986543 3455555554 8999999999998653 33344677888899999999999999999
Q ss_pred HHHHHHHHHHh
Q 030504 162 KPFLYLARKLA 172 (176)
Q Consensus 162 ~~~~~l~~~i~ 172 (176)
++|+++.+.+.
T Consensus 156 el~~~i~~~~~ 166 (258)
T 3a1s_A 156 ELKEKIVEYAQ 166 (258)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHhh
Confidence 99999998765
|
| >3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum} | Back alignment and structure |
|---|
Probab=99.96 E-value=6.8e-30 Score=193.20 Aligned_cols=164 Identities=21% Similarity=0.295 Sum_probs=122.3
Q ss_pred CCCCeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEE------E--EecCcEEEEEEEeCCCccccccccc
Q 030504 9 VDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLD------F--FTNCGKIRFYCWDTAGQEKFGGLRD 80 (176)
Q Consensus 9 ~~~~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~------~--~~~~~~~~~~~~D~~g~~~~~~~~~ 80 (176)
.....+||+++|.+|||||||++++..+.+...+.++.|.+..... + ..++..+.+.+|||||++.+.....
T Consensus 37 ~~~~~~kV~lvG~~~vGKSSLl~~l~~~~~~~~~~~t~g~~~~~~~~~~~~~v~~~~~~~~~~~~i~Dt~G~e~~~~~~~ 116 (535)
T 3dpu_A 37 VHLQEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECLFHFWDFGGQEIMHASHQ 116 (535)
T ss_dssp BCCCEEEEEEESSSCSSHHHHHHHHHC-----------CCCEEEEEGGGSGGGTTCSTTTTCEEEEECCCSCCTTTTTCH
T ss_pred ccccceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEeccccccceeecCCCceEEEEEEECCcHHHHHHHHH
Confidence 3567899999999999999999999998888788888887666442 1 2234468899999999999999999
Q ss_pred cccccccEEEEEEeCCChhhhhhHHHHHHHHhhhcCCCCEEEEEeCCCCCcccc--CHHHHHHHHHcCCeEEEeccCCCC
Q 030504 81 GYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQV--KAKQVTFHRKKNLQYYEISAKSNY 158 (176)
Q Consensus 81 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~S~~~~~ 158 (176)
.+++.+|++++|+|+++. +....|+..+....++.|+++|+||+|+..... ..+..+++...+++++++||++|.
T Consensus 117 ~~l~~~d~ii~V~D~s~~---~~~~~~~~~l~~~~~~~pvilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~vSA~~g~ 193 (535)
T 3dpu_A 117 FFMTRSSVYMLLLDSRTD---SNKHYWLRHIEKYGGKSPVIVVMNKIDENPSYNIEQKKINERFPAIENRFHRISCKNGD 193 (535)
T ss_dssp HHHHSSEEEEEEECGGGG---GGHHHHHHHHHHHSSSCCEEEEECCTTTCTTCCCCHHHHHHHCGGGTTCEEECCC----
T ss_pred HHccCCcEEEEEEeCCCc---hhHHHHHHHHHHhCCCCCEEEEEECCCcccccccCHHHHHHHHHhcCCceEEEecCccc
Confidence 999999999999998754 666778888887767899999999999975332 234557777788999999999999
Q ss_pred ChHHHHHHHHHHHhcCC
Q 030504 159 NFEKPFLYLARKLAGST 175 (176)
Q Consensus 159 ~v~~~~~~l~~~i~~~~ 175 (176)
|++++|+++++.+.+.+
T Consensus 194 gi~eL~~~l~~~~~~~~ 210 (535)
T 3dpu_A 194 GVESIAKSLKSAVLHPD 210 (535)
T ss_dssp -CTTHHHHHHHHHTCTT
T ss_pred CHHHHHHHHHHHHhccc
Confidence 99999999999887653
|
| >2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.96 E-value=4.9e-30 Score=170.12 Aligned_cols=155 Identities=15% Similarity=0.184 Sum_probs=113.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCC-----------ccccccccccc
Q 030504 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAG-----------QEKFGGLRDGY 82 (176)
Q Consensus 14 ~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g-----------~~~~~~~~~~~ 82 (176)
+||+++|.+|||||||++++..+.+...+.++.. ......... .+.+||||| ++.+...+..+
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~t--~~~~~~~~~----~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~ 75 (190)
T 2cxx_A 2 ATIIFAGRSNVGKSTLIYRLTGKKVRRGKRPGVT--RKIIEIEWK----NHKIIDMPGFGFMMGLPKEVQERIKDEIVHF 75 (190)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHSCCCSSSSSTTCT--TSCEEEEET----TEEEEECCCBSCCTTSCHHHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhCcCCccCCCCCcc--ceeEEEecC----CEEEEECCCccccccCCHHHHHHHHHHHHHH
Confidence 6899999999999999999998887766555433 333333332 588999999 56666667777
Q ss_pred ccc-ccEEEEEEeCCChhhhhhH-HHHHHH--------Hhhh--cCCCCEEEEEeCCCCCccccCHHHHHHHHHcCCe--
Q 030504 83 YIH-GQCAIIMFDVTARLTYKNV-PTWHRD--------LCRV--CENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQ-- 148 (176)
Q Consensus 83 ~~~-~~~~i~v~d~~~~~s~~~~-~~~~~~--------~~~~--~~~~p~liv~nK~Dl~~~~~~~~~~~~~~~~~~~-- 148 (176)
++. ++++++|+++.+..++..+ ..|... +... ..+.|+++|+||+|+.... ......+++..+++
T Consensus 76 ~~~~~~~~~~v~~v~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~-~~~~~~~~~~~~~~~~ 154 (190)
T 2cxx_A 76 IEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELDIPTIVAVNKLDKIKNV-QEVINFLAEKFEVPLS 154 (190)
T ss_dssp HHHHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHHTTCCEEEEEECGGGCSCH-HHHHHHHHHHHTCCGG
T ss_pred HHhhhccCCEEEEEEcchhhhhHHHhhhccCccHHHHHHHHHHHhcCCceEEEeehHhccCcH-HHHHHHHHHHhhhhhh
Confidence 776 7777777777777777665 344431 1111 2589999999999997655 33455677777764
Q ss_pred -----EEEeccCCCCChHHHHHHHHHHHhcCC
Q 030504 149 -----YYEISAKSNYNFEKPFLYLARKLAGST 175 (176)
Q Consensus 149 -----~~~~S~~~~~~v~~~~~~l~~~i~~~~ 175 (176)
++++||++|.|++++|+++++.+.+..
T Consensus 155 ~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~~~~ 186 (190)
T 2cxx_A 155 EIDKVFIPISAKFGDNIERLKNRIFEVIRERQ 186 (190)
T ss_dssp GHHHHEEECCTTTCTTHHHHHHHHHHHHHHC-
T ss_pred ccCCcEEEEecCCCCCHHHHHHHHHHhcchhh
Confidence 799999999999999999999887654
|
| >3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A | Back alignment and structure |
|---|
Probab=99.96 E-value=1.5e-28 Score=163.54 Aligned_cols=157 Identities=15% Similarity=0.204 Sum_probs=111.8
Q ss_pred CCCCeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCC----------ccccccc
Q 030504 9 VDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAG----------QEKFGGL 78 (176)
Q Consensus 9 ~~~~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g----------~~~~~~~ 78 (176)
+....+||+++|.+|+|||||+++++.+.. ..+.++.+.+........+. .+.+||||| ++.+...
T Consensus 19 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~-~~~~~~~~~t~~~~~~~~~~---~~~i~Dt~G~~~~~~~~~~~~~~~~~ 94 (195)
T 3pqc_A 19 PPPLKGEVAFVGRSNVGKSSLLNALFNRKI-AFVSKTPGKTRSINFYLVNS---KYYFVDLPGYGYAKVSKKERMLWKRL 94 (195)
T ss_dssp CCCTTCEEEEEEBTTSSHHHHHHHHHTSCC-SCCCSSCCCCCCEEEEEETT---TEEEEECCCBSSSCCCHHHHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHcCcc-ccccCCCCCccCeEEEEECC---cEEEEECCCCccccCChhhHHHHHHH
Confidence 445678999999999999999999887763 34455655555444333332 467999999 5556666
Q ss_pred cccccccc---cEEEEEEeCCChhhh--hhHHHHHHHHhhhcCCCCEEEEEeCCCCCccccCH----HHHHHHHH-cCCe
Q 030504 79 RDGYYIHG---QCAIIMFDVTARLTY--KNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKA----KQVTFHRK-KNLQ 148 (176)
Q Consensus 79 ~~~~~~~~---~~~i~v~d~~~~~s~--~~~~~~~~~~~~~~~~~p~liv~nK~Dl~~~~~~~----~~~~~~~~-~~~~ 148 (176)
+..+++.+ +++++|+|+++..+. ..+..|+ ... +.|+++|+||+|+.+..... +...++.. ..++
T Consensus 95 ~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~---~~~--~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 169 (195)
T 3pqc_A 95 VEDYFKNRWSLQMVFLLVDGRIPPQDSDLMMVEWM---KSL--NIPFTIVLTKMDKVKMSERAKKLEEHRKVFSKYGEYT 169 (195)
T ss_dssp HHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHH---HHT--TCCEEEEEECGGGSCGGGHHHHHHHHHHHHHSSCCSC
T ss_pred HHHHHhcCcCceEEEEEecCCCCCCHHHHHHHHHH---HHc--CCCEEEEEEChhcCChHHHHHHHHHHHHHHhhcCCCc
Confidence 66666655 999999999875432 2223333 332 89999999999997543222 23344444 3479
Q ss_pred EEEeccCCCCChHHHHHHHHHHHhcC
Q 030504 149 YYEISAKSNYNFEKPFLYLARKLAGS 174 (176)
Q Consensus 149 ~~~~S~~~~~~v~~~~~~l~~~i~~~ 174 (176)
++++||++|.|++++|+++.+.+.++
T Consensus 170 ~~~~Sa~~~~gv~~l~~~l~~~l~~~ 195 (195)
T 3pqc_A 170 IIPTSSVTGEGISELLDLISTLLKEN 195 (195)
T ss_dssp EEECCTTTCTTHHHHHHHHHHHHC--
T ss_pred eEEEecCCCCCHHHHHHHHHHHhhcC
Confidence 99999999999999999999988753
|
| >2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A | Back alignment and structure |
|---|
Probab=99.96 E-value=1e-29 Score=166.35 Aligned_cols=155 Identities=15% Similarity=0.125 Sum_probs=108.4
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHhcCCCCC-ccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccc--------cccc
Q 030504 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEK-KYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGL--------RDGY 82 (176)
Q Consensus 12 ~~~~i~i~G~~~~GKttl~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~--------~~~~ 82 (176)
+.+||+++|.+|+|||||++++....... ...+..+.+.....+..++ ..+.+|||||++.+... ...+
T Consensus 3 ~~~ki~ivG~~g~GKStLl~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~ 80 (172)
T 2gj8_A 3 HGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDG--MPLHIIDTAGLREASDEVERIGIERAWQE 80 (172)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEETT--EEEEEEECCCCSCCSSHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcceeeCCCCceeceeeEEEEECC--eEEEEEECCCcccchhHHHHHHHHHHHHH
Confidence 45899999999999999999987665321 1122222233334444443 35789999998754321 1135
Q ss_pred cccccEEEEEEeCCChhhhhhHHHHHHHHhhhc-CCCCEEEEEeCCCCCccccCHHHHHHHHHcCCeEEEeccCCCCChH
Q 030504 83 YIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFE 161 (176)
Q Consensus 83 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~liv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~ 161 (176)
++.+|++++|+|++++.+++ ...|+..+.+.. .+.|+++|+||+|+..... .++...+++++++||++|.|++
T Consensus 81 ~~~ad~~i~v~D~~~~~s~~-~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~-----~~~~~~~~~~~~~SA~~g~gv~ 154 (172)
T 2gj8_A 81 IEQADRVLFMVDGTTTDAVD-PAEIWPEFIARLPAKLPITVVRNKADITGETL-----GMSEVNGHALIRLSARTGEGVD 154 (172)
T ss_dssp HHTCSEEEEEEETTTCCCCS-HHHHCHHHHHHSCTTCCEEEEEECHHHHCCCC-----EEEEETTEEEEECCTTTCTTHH
T ss_pred HHhCCEEEEEEECCCCCCHH-HHHHHHHHHHhcccCCCEEEEEECccCCcchh-----hhhhccCCceEEEeCCCCCCHH
Confidence 78999999999999988776 345666665543 4799999999999864321 1222356789999999999999
Q ss_pred HHHHHHHHHHhcC
Q 030504 162 KPFLYLARKLAGS 174 (176)
Q Consensus 162 ~~~~~l~~~i~~~ 174 (176)
++|++|.+.+...
T Consensus 155 ~l~~~l~~~~~~~ 167 (172)
T 2gj8_A 155 VLRNHLKQSMGFD 167 (172)
T ss_dssp HHHHHHHHHC---
T ss_pred HHHHHHHHHhhhc
Confidence 9999999887544
|
| >3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=6.8e-29 Score=172.76 Aligned_cols=152 Identities=14% Similarity=0.122 Sum_probs=116.7
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccc------cccccccc--
Q 030504 13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFG------GLRDGYYI-- 84 (176)
Q Consensus 13 ~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~------~~~~~~~~-- 84 (176)
.++|+++|.+|||||||++++.+....... ..|.++......+.. ...+.+|||||++.+. ...+.++.
T Consensus 3 ~~kI~lvG~~nvGKSTL~n~L~g~~~~v~~--~pg~tv~~~~~~~~~-~~~l~l~DtpG~~~~~~~~~~e~v~~~~~~~~ 79 (272)
T 3b1v_A 3 MTEIALIGNPNSGKTSLFNLITGHNQRVGN--WPGVTVERKSGLVKK-NKDLEIQDLPGIYSMSPYSPEAKVARDYLLSQ 79 (272)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHCCCCCCCS--SSCCCCSCEEEECTT-CTTEEEEECCCCSCSSCSSHHHHHHHHHHHTT
T ss_pred ceEEEEECCCCCCHHHHHHHHHCCCCcccC--CCCCcEEEEEEEEec-CCeEEEEECCCcCccCCCChHHHHHHHHHhcC
Confidence 579999999999999999998876533222 235555555555555 6679999999998775 34455555
Q ss_pred cccEEEEEEeCCChhhhhhHHHHHHHHhhhcCCCCEEEEEeCCCCCcc-ccCHHHHHHHHHcCCeEEEeccCCCCChHHH
Q 030504 85 HGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNR-QVKAKQVTFHRKKNLQYYEISAKSNYNFEKP 163 (176)
Q Consensus 85 ~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~~~-~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~ 163 (176)
.+|++++|+|+++..+. ..|...+.+. +.|+++++||+|+... ....+...+++.++++++++||++|.|++++
T Consensus 80 ~~d~vi~V~D~t~~e~~---~~~~~~l~~~--~~p~ilv~NK~Dl~~~~~~~~~~~~l~~~lg~~vi~~SA~~g~gi~el 154 (272)
T 3b1v_A 80 RADSILNVVDATNLERN---LYLTTQLIET--GIPVTIALNMIDVLDGQGKKINVDKLSYHLGVPVVATSALKQTGVDQV 154 (272)
T ss_dssp CCSEEEEEEEGGGHHHH---HHHHHHHHHT--CSCEEEEEECHHHHHHTTCCCCHHHHHHHHTSCEEECBTTTTBSHHHH
T ss_pred CCCEEEEEecCCchHhH---HHHHHHHHhc--CCCEEEEEEChhhCCcCCcHHHHHHHHHHcCCCEEEEEccCCCCHHHH
Confidence 59999999999886543 3455555553 8999999999998653 3344556788888999999999999999999
Q ss_pred HHHHHHHHh
Q 030504 164 FLYLARKLA 172 (176)
Q Consensus 164 ~~~l~~~i~ 172 (176)
|+++++.+.
T Consensus 155 ~~~i~~~~~ 163 (272)
T 3b1v_A 155 VKKAAHTTT 163 (272)
T ss_dssp HHHHHHSCT
T ss_pred HHHHHHHHh
Confidence 999988654
|
| >4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=99.95 E-value=2.1e-28 Score=166.16 Aligned_cols=163 Identities=17% Similarity=0.044 Sum_probs=112.2
Q ss_pred CCCCeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEec-CcEEEEEEEeCCCcc----------cccc
Q 030504 9 VDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTN-CGKIRFYCWDTAGQE----------KFGG 77 (176)
Q Consensus 9 ~~~~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~D~~g~~----------~~~~ 77 (176)
+....++|+++|.+|+|||||+++++.+........+.+.+......... .....+.+|||||.. .+..
T Consensus 25 ~~~~~~~i~v~G~~~~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~ 104 (223)
T 4dhe_A 25 PPTVQPEIAFAGRSNAGKSTAINVLCNQKRLAFASKTPGRTQHINYFSVGPAAEPVAHLVDLPGYGYAEVPGAAKAHWEQ 104 (223)
T ss_dssp CCCCSCEEEEEESCHHHHHHHHHHHTTCSSSSCTTCCCCSCCCEEEEEESCTTSCSEEEEECCCCCSSCCCSTHHHHHHH
T ss_pred CCCCCCEEEEEcCCCCCHHHHHHHHhCCCcceeecCCCCcccceEEEEecCCCCCcEEEEcCCCCCcccCChhhHHHHHH
Confidence 34467899999999999999999988776333334444444444444444 455678999999953 2334
Q ss_pred cccccccc---ccEEEEEEeCCChhhhhhHHHHHHHHhhhcCCCCEEEEEeCCCCCccccCH----HHHHHHHH------
Q 030504 78 LRDGYYIH---GQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKA----KQVTFHRK------ 144 (176)
Q Consensus 78 ~~~~~~~~---~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~~~~~~~----~~~~~~~~------ 144 (176)
....++.. +|++++|+|++++.+. ....++..+... +.|+++|+||+|+....... ...+....
T Consensus 105 ~~~~~~~~~~~~d~vi~v~d~~~~~~~-~~~~~~~~l~~~--~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~l~~~~~~~~ 181 (223)
T 4dhe_A 105 LLSSYLQTRPQLCGMILMMDARRPLTE-LDRRMIEWFAPT--GKPIHSLLTKCDKLTRQESINALRATQKSLDAYRDAGY 181 (223)
T ss_dssp HHHHHHHHCTTEEEEEEEEETTSCCCH-HHHHHHHHHGGG--CCCEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHhcCcCcCEEEEEEeCCCCCCH-HHHHHHHHHHhc--CCCEEEEEeccccCChhhHHHHHHHHHHHHHhhhhccc
Confidence 44455554 7889999999875432 223344555443 89999999999997643321 12222222
Q ss_pred -cCCeEEEeccCCCCChHHHHHHHHHHHhcC
Q 030504 145 -KNLQYYEISAKSNYNFEKPFLYLARKLAGS 174 (176)
Q Consensus 145 -~~~~~~~~S~~~~~~v~~~~~~l~~~i~~~ 174 (176)
.+++++++||++|.|++++|++|.+.+.+.
T Consensus 182 ~~~~~~~~~SA~~g~gv~~l~~~l~~~~~~~ 212 (223)
T 4dhe_A 182 AGKLTVQLFSALKRTGLDDAHALIESWLRPA 212 (223)
T ss_dssp CSCEEEEEEBTTTTBSHHHHHHHHHHHHC--
T ss_pred CCCCeEEEeecCCCcCHHHHHHHHHHhcCcc
Confidence 567899999999999999999999987653
|
| >3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila} | Back alignment and structure |
|---|
Probab=99.95 E-value=2.3e-28 Score=168.92 Aligned_cols=150 Identities=15% Similarity=0.149 Sum_probs=112.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCcccccc----------cccccc
Q 030504 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGG----------LRDGYY 83 (176)
Q Consensus 14 ~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~----------~~~~~~ 83 (176)
.+|+++|.+|||||||+|++.+........+..+.+.....+...+ ..+.+|||||+..+.. ..+.++
T Consensus 2 ~kI~lvG~~n~GKSTL~n~L~g~~~~v~~~pg~Tv~~~~~~~~~~~--~~~~lvDtpG~~~~~~~~~~~~~~e~i~~~~~ 79 (256)
T 3iby_A 2 THALLIGNPNCGKTTLFNALTNANQRVGNWPGVTVEKKTGEFLLGE--HLIEITDLPGVYSLVANAEGISQDEQIAAQSV 79 (256)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTSEEEEECTTSSSEEEEEEEEETT--EEEEEEECCCCSSCC------CHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCccCCCCceEEEEEEEEEECC--eEEEEEeCCCcccccccccCCCHHHHHHHHHH
Confidence 3899999999999999999887765444444443344444444443 4789999999887654 445566
Q ss_pred --ccccEEEEEEeCCChhhhhhHHHHHHHHhhhcCCCCEEEEEeCCCCCccc-cCHHHHHHHHHcCCeEEEeccCCCCCh
Q 030504 84 --IHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQ-VKAKQVTFHRKKNLQYYEISAKSNYNF 160 (176)
Q Consensus 84 --~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~~S~~~~~~v 160 (176)
..+|++++|+|+++..+...+ ...+.+. +.|+++|+||+|+.... .......+.+..+++++++||++|.|+
T Consensus 80 ~~~~~d~vi~VvDas~~~~~~~l---~~~l~~~--~~pvilv~NK~Dl~~~~~~~~~~~~l~~~lg~~vi~~SA~~g~gi 154 (256)
T 3iby_A 80 IDLEYDCIINVIDACHLERHLYL---TSQLFEL--GKPVVVALNMMDIAEHRGISIDTEKLESLLGCSVIPIQAHKNIGI 154 (256)
T ss_dssp HHSCCSEEEEEEEGGGHHHHHHH---HHHHTTS--CSCEEEEEECHHHHHHTTCEECHHHHHHHHCSCEEECBGGGTBSH
T ss_pred hhCCCCEEEEEeeCCCchhHHHH---HHHHHHc--CCCEEEEEEChhcCCcCCcHHHHHHHHHHcCCCEEEEECCCCCCH
Confidence 789999999999986544433 3334443 89999999999987543 333455677888999999999999999
Q ss_pred HHHHHHHHHH
Q 030504 161 EKPFLYLARK 170 (176)
Q Consensus 161 ~~~~~~l~~~ 170 (176)
+++|+++.+.
T Consensus 155 ~el~~~i~~~ 164 (256)
T 3iby_A 155 PALQQSLLHC 164 (256)
T ss_dssp HHHHHHHHTC
T ss_pred HHHHHHHHhh
Confidence 9999999876
|
| >3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.6e-27 Score=166.33 Aligned_cols=157 Identities=17% Similarity=0.131 Sum_probs=117.2
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCcccccc------cccccc--
Q 030504 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGG------LRDGYY-- 83 (176)
Q Consensus 12 ~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~------~~~~~~-- 83 (176)
+.+||+++|++|||||||++++.+..+.....++.+.+......... +..+.+|||||+..+.. ..+.++
T Consensus 2 ~~~~i~lvG~~g~GKTTL~n~l~g~~~~~~~~~~~t~~~~~~~~~~~--~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~ 79 (271)
T 3k53_A 2 VLKTVALVGNPNVGKTTIFNALTGLRQHVGNWPGVTVEKKEGIMEYR--EKEFLVVDLPGIYSLTAHSIDELIARNFILD 79 (271)
T ss_dssp CCEEEEEEECSSSSHHHHHHHHHTTCEEEEECTTSSCEEEEEEEEET--TEEEEEEECCCCSCCCSSCHHHHHHHHHHHT
T ss_pred ceeEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeEEEeeEEEEEEC--CceEEEEeCCCccccccCCHHHHHHHHhhhc
Confidence 46899999999999999999988776644444444444444444443 34589999999987765 455555
Q ss_pred ccccEEEEEEeCCChhhhhhHHHHHHHHhhhcCCCCEEEEEeCCCCCc-cccCHHHHHHHHHcCCeEEEeccCCCCChHH
Q 030504 84 IHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKN-RQVKAKQVTFHRKKNLQYYEISAKSNYNFEK 162 (176)
Q Consensus 84 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~ 162 (176)
.++|++++|+|+++.. ....+...+.+. ...|+++|+||+|+.. +........+.+..+++++++|+++|.|+++
T Consensus 80 ~~~d~vi~v~D~~~~~---~~~~~~~~~~~~-~~~p~ilv~NK~Dl~~~~~~~~~~~~l~~~lg~~~~~~Sa~~g~gi~~ 155 (271)
T 3k53_A 80 GNADVIVDIVDSTCLM---RNLFLTLELFEM-EVKNIILVLNKFDLLKKKGAKIDIKKMRKELGVPVIPTNAKKGEGVEE 155 (271)
T ss_dssp TCCSEEEEEEEGGGHH---HHHHHHHHHHHT-TCCSEEEEEECHHHHHHHTCCCCHHHHHHHHSSCEEECBGGGTBTHHH
T ss_pred cCCcEEEEEecCCcch---hhHHHHHHHHhc-CCCCEEEEEEChhcCcccccHHHHHHHHHHcCCcEEEEEeCCCCCHHH
Confidence 6799999999998863 233344444443 1399999999999864 3333346677888899999999999999999
Q ss_pred HHHHHHHHHhcC
Q 030504 163 PFLYLARKLAGS 174 (176)
Q Consensus 163 ~~~~l~~~i~~~ 174 (176)
+|+++.+.+.+.
T Consensus 156 l~~~i~~~~~~~ 167 (271)
T 3k53_A 156 LKRMIALMAEGK 167 (271)
T ss_dssp HHHHHHHHHHTC
T ss_pred HHHHHHHHHhcc
Confidence 999999887643
|
| >3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=2.1e-28 Score=170.83 Aligned_cols=156 Identities=15% Similarity=0.150 Sum_probs=113.6
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccc----------ccc
Q 030504 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGL----------RDG 81 (176)
Q Consensus 12 ~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~----------~~~ 81 (176)
+.++|+++|.+|+|||||+|++.+..+.....++...+.....+.. ....+.+|||||+..+... ...
T Consensus 2 ~~~~I~lvG~~n~GKSTLin~l~g~~~~v~~~~g~t~~~~~~~~~~--~~~~~~liDtpG~~~~~~~~~~~~~~e~i~~~ 79 (274)
T 3i8s_A 2 KKLTIGLIGNPNSGKTTLFNQLTGSRQRVGNWAGVTVERKEGQFST--TDHQVTLVDLPGTYSLTTISSQTSLDEQIACH 79 (274)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHTTCEEEEECTTSSSEEEEEEEEC--SSCEEEEEECCCCSCSCC----CCHHHHHHHH
T ss_pred CccEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeeEEEEEEEEEe--CCCceEEEECcCCCccccccccCCHHHHHHHH
Confidence 5689999999999999999998877654333333333333333333 3456789999998876632 222
Q ss_pred cc--ccccEEEEEEeCCChhhhhhHHHHHHHHhhhcCCCCEEEEEeCCCCCccc-cCHHHHHHHHHcCCeEEEeccCCCC
Q 030504 82 YY--IHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQ-VKAKQVTFHRKKNLQYYEISAKSNY 158 (176)
Q Consensus 82 ~~--~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~~S~~~~~ 158 (176)
++ ..+|++++|+|+++..... .+...+.+. +.|+++|+||+|+.... .......+.+..+++++++||++|.
T Consensus 80 ~~~~~~~d~ii~VvD~~~~~~~~---~~~~~l~~~--~~p~ivv~NK~Dl~~~~~~~~~~~~l~~~lg~~~i~~SA~~g~ 154 (274)
T 3i8s_A 80 YILSGDADLLINVVDASNLERNL---YLTLQLLEL--GIPCIVALNMLDIAEKQNIRIEIDALSARLGCPVIPLVSTRGR 154 (274)
T ss_dssp HHHHTCCSEEEEEEEGGGHHHHH---HHHHHHHHH--TCCEEEEEECHHHHHHTTEEECHHHHHHHHTSCEEECCCGGGH
T ss_pred HHhhcCCCEEEEEecCCChHHHH---HHHHHHHhc--CCCEEEEEECccchhhhhHHHHHHHHHHhcCCCEEEEEcCCCC
Confidence 22 6899999999999865443 334444444 89999999999987533 3334567778889999999999999
Q ss_pred ChHHHHHHHHHHHhcC
Q 030504 159 NFEKPFLYLARKLAGS 174 (176)
Q Consensus 159 ~v~~~~~~l~~~i~~~ 174 (176)
|++++|+++.+.+.+.
T Consensus 155 gi~el~~~i~~~~~~~ 170 (274)
T 3i8s_A 155 GIEALKLAIDRYKANE 170 (274)
T ss_dssp HHHHHHHHHHTCCCCC
T ss_pred CHHHHHHHHHHHHhcC
Confidence 9999999998876543
|
| >1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1 | Back alignment and structure |
|---|
Probab=99.95 E-value=2.1e-27 Score=167.54 Aligned_cols=159 Identities=18% Similarity=0.124 Sum_probs=110.9
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCcccc--------ccccccc
Q 030504 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKF--------GGLRDGY 82 (176)
Q Consensus 11 ~~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~--------~~~~~~~ 82 (176)
.+..+|+++|.+|||||||+|++++...... .+..+++..............+.+|||||.... ......+
T Consensus 5 ~~~g~V~ivG~~nvGKSTLln~l~g~~~~iv-s~~~~tTr~~i~~i~~~~~~~l~l~DTpG~~~~~~~l~~~~~~~~~~~ 83 (301)
T 1wf3_A 5 TYSGFVAIVGKPNVGKSTLLNNLLGVKVAPI-SPRPQTTRKRLRGILTEGRRQIVFVDTPGLHKPMDALGEFMDQEVYEA 83 (301)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHTSCCSCC-CSSSCCCCSCEEEEEEETTEEEEEEECCCCCCCCSHHHHHHHHHHHHH
T ss_pred ccCCEEEEECCCCCCHHHHHHHHhCCceeee-cCCCCceeEEEEEEEEeCCcEEEEecCccccchhhHHHHHHHHHHHHH
Confidence 4567899999999999999999887765421 122222333332223335678999999998763 3345567
Q ss_pred cccccEEEEEEeCCChhhhhhHHHHH-HHHhhhcCCCCEEEEEeCCCCCccccCHHHHHHHHH-c-CCeEEEeccCCCCC
Q 030504 83 YIHGQCAIIMFDVTARLTYKNVPTWH-RDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRK-K-NLQYYEISAKSNYN 159 (176)
Q Consensus 83 ~~~~~~~i~v~d~~~~~s~~~~~~~~-~~~~~~~~~~p~liv~nK~Dl~~~~~~~~~~~~~~~-~-~~~~~~~S~~~~~~ 159 (176)
++.+|++++|+|++++.+.. ..|+ ..+....++.|+++|+||+|+...... ..+..+. . ...++++||++|.|
T Consensus 84 l~~ad~il~VvD~~~~~~~~--~~~i~~~l~~~~~~~p~ilV~NK~Dl~~~~~~--~~~~~~~~~~~~~~~~iSA~~g~g 159 (301)
T 1wf3_A 84 LADVNAVVWVVDLRHPPTPE--DELVARALKPLVGKVPILLVGNKLDAAKYPEE--AMKAYHELLPEAEPRMLSALDERQ 159 (301)
T ss_dssp TSSCSEEEEEEETTSCCCHH--HHHHHHHHGGGTTTSCEEEEEECGGGCSSHHH--HHHHHHHTSTTSEEEECCTTCHHH
T ss_pred HhcCCEEEEEEECCCCCChH--HHHHHHHHHhhcCCCCEEEEEECcccCCchHH--HHHHHHHhcCcCcEEEEeCCCCCC
Confidence 88999999999998764333 3343 445444458999999999999753320 1222222 2 35789999999999
Q ss_pred hHHHHHHHHHHHhcC
Q 030504 160 FEKPFLYLARKLAGS 174 (176)
Q Consensus 160 v~~~~~~l~~~i~~~ 174 (176)
++++++++.+.+.+.
T Consensus 160 v~~l~~~l~~~l~~~ 174 (301)
T 1wf3_A 160 VAELKADLLALMPEG 174 (301)
T ss_dssp HHHHHHHHHTTCCBC
T ss_pred HHHHHHHHHHhcccC
Confidence 999999999876543
|
| >3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=9.9e-27 Score=172.74 Aligned_cols=158 Identities=15% Similarity=0.071 Sum_probs=98.6
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCcccccccc--------cccc
Q 030504 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLR--------DGYY 83 (176)
Q Consensus 12 ~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~--------~~~~ 83 (176)
..++|+++|.+|+|||||+|+++..... ...+..+++.......+...++.+.+|||||++.+...+ ..++
T Consensus 232 ~~~kV~ivG~~nvGKSSLln~L~~~~~a-~vs~~~gtT~d~~~~~i~~~g~~l~liDT~G~~~~~~~ve~~gi~~~~~~~ 310 (476)
T 3gee_A 232 EGVSTVIAGKPNAGKSTLLNTLLGQERA-IVSHMPGTTRDYIEECFIHDKTMFRLTDTAGLREAGEEIEHEGIRRSRMKM 310 (476)
T ss_dssp HCEEEEEECCTTSSHHHHHHHCC-------------------CEEEEETTEEEEEEC--------------------CCC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCc-ccCCCCCceEEEEEEEEEECCeEEEEEECCCCCcchhHHHHHHHHHHHhhc
Confidence 3578999999999999999997765421 112233444444333333345679999999987765433 4467
Q ss_pred ccccEEEEEEeCCChhhhhhHHHHHHHHhhhcCCCCEEEEEeCCCCCccccCHHHHHHHHHcCCeEEEeccCCCCChHHH
Q 030504 84 IHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKP 163 (176)
Q Consensus 84 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~ 163 (176)
..+|++++|+|++++.+++.+..+...+.. ..+.|+++|+||+|+........ ..+.....++++++||++|.|++++
T Consensus 311 ~~aD~vl~VvD~s~~~s~~~~~~~~~~l~~-l~~~piIvV~NK~Dl~~~~~~~~-~~l~~~~~~~~i~vSAktg~GI~eL 388 (476)
T 3gee_A 311 AEADLILYLLDLGTERLDDELTEIRELKAA-HPAAKFLTVANKLDRAANADALI-RAIADGTGTEVIGISALNGDGIDTL 388 (476)
T ss_dssp SSCSEEEEEEETTTCSSGGGHHHHHHHHHH-CTTSEEEEEEECTTSCTTTHHHH-HHHHHHHTSCEEECBTTTTBSHHHH
T ss_pred ccCCEEEEEEECCCCcchhhhHHHHHHHHh-cCCCCEEEEEECcCCCCccchhH-HHHHhcCCCceEEEEECCCCCHHHH
Confidence 899999999999998887654444333322 34899999999999976543222 2333333478999999999999999
Q ss_pred HHHHHHHHh
Q 030504 164 FLYLARKLA 172 (176)
Q Consensus 164 ~~~l~~~i~ 172 (176)
|++|.+.+.
T Consensus 389 ~~~i~~~~~ 397 (476)
T 3gee_A 389 KQHMGDLVK 397 (476)
T ss_dssp HHHHTHHHH
T ss_pred HHHHHHHHh
Confidence 999999886
|
| >3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana} | Back alignment and structure |
|---|
Probab=99.94 E-value=1.4e-27 Score=174.69 Aligned_cols=158 Identities=16% Similarity=0.175 Sum_probs=112.8
Q ss_pred CCCCeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEe--EEEEEecCcEEEEEEEeCCCcccccccc-------
Q 030504 9 VDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVH--PLDFFTNCGKIRFYCWDTAGQEKFGGLR------- 79 (176)
Q Consensus 9 ~~~~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~D~~g~~~~~~~~------- 79 (176)
+....++|+++|..++|||||+++++...+... ....+++.. ......... ..+.+|||||++.+....
T Consensus 30 ~~~~~~kI~IvG~~~vGKSTLin~L~~~~~~~~-~~~~gtT~d~~~~~~~~~~~-~~l~liDTpG~~d~~~l~~~~~~~~ 107 (423)
T 3qq5_A 30 DAGFRRYIVVAGRRNVGKSSFMNALVGQNVSIV-SDYAGTTTDPVYKSMELHPI-GPVTLVDTPGLDDVGELGRLRVEKA 107 (423)
T ss_dssp --CCCEEEEEECSCSTTTTTTTTSSCC--------------CCCCEEEEEETTT-EEEEEEECSSTTCCCTTCCCCHHHH
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHcCCCCcc-CCCCCeeeeeEEEEEEECCC-CeEEEEECcCCCcccchhHHHHHHH
Confidence 445679999999999999999999887665311 222233333 333344433 278999999998776553
Q ss_pred ccccccccEEEEEEeCCChhhhhhHHHHHHHHhhhcCCCCEEEEEeCCCCCccccCHHHHHHHHHcCCeEEEeccCCCCC
Q 030504 80 DGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYN 159 (176)
Q Consensus 80 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~ 159 (176)
..++..+|++++|+|++.. .....|+..+.+. +.|+++|+||+|+...........+.+..+++++++||++|.|
T Consensus 108 ~~~l~~aD~vllVvD~~~~---~~~~~~l~~l~~~--~~piIvV~NK~Dl~~~~~~~~~~~l~~~~g~~v~~vSAktg~g 182 (423)
T 3qq5_A 108 RRVFYRADCGILVTDSAPT---PYEDDVVNLFKEM--EIPFVVVVNKIDVLGEKAEELKGLYESRYEAKVLLVSALQKKG 182 (423)
T ss_dssp HHHHTSCSEEEEECSSSCC---HHHHHHHHHHHHT--TCCEEEECCCCTTTTCCCTHHHHHSSCCTTCCCCCCSSCCTTS
T ss_pred HHHHhcCCEEEEEEeCCCh---HHHHHHHHHHHhc--CCCEEEEEeCcCCCCccHHHHHHHHHHHcCCCEEEEECCCCCC
Confidence 3467889999999998333 2334566666665 8999999999999876666555666677889999999999999
Q ss_pred hHHHHHHHHHHHhc
Q 030504 160 FEKPFLYLARKLAG 173 (176)
Q Consensus 160 v~~~~~~l~~~i~~ 173 (176)
++++|++|.+.+.+
T Consensus 183 I~eL~~~L~~~l~~ 196 (423)
T 3qq5_A 183 FDDIGKTISEILPG 196 (423)
T ss_dssp TTTHHHHHHHHSCC
T ss_pred HHHHHHHHHHhhhh
Confidence 99999999998844
|
| >2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=99.94 E-value=9.9e-26 Score=162.82 Aligned_cols=161 Identities=19% Similarity=0.147 Sum_probs=117.0
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCcccccc---------cccc
Q 030504 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGG---------LRDG 81 (176)
Q Consensus 11 ~~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~---------~~~~ 81 (176)
...++|+++|.+|||||||++++..........+.. +..............+.+|||||...... ....
T Consensus 165 ~~~~~v~lvG~~gvGKSTLin~L~~~~~~~~~~~~~--t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~ 242 (357)
T 2e87_A 165 LEIPTVVIAGHPNVGKSTLLKALTTAKPEIASYPFT--TRGINVGQFEDGYFRYQIIDTPGLLDRPISERNEIEKQAILA 242 (357)
T ss_dssp SSSCEEEEECSTTSSHHHHHHHHCSSCCEEECCTTC--SSCEEEEEEEETTEEEEEEECTTTSSSCSTTSCHHHHHHHHG
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCe--eeceeEEEEEecCceEEEEeCCCccccchhhhhHHHHHHHHH
Confidence 467899999999999999999987665322111111 11111112222356789999999754321 1113
Q ss_pred ccccccEEEEEEeCCChh--hhhhHHHHHHHHhhhcCCCCEEEEEeCCCCCccccCHHHHHHHHHcCCeEEEeccCCCCC
Q 030504 82 YYIHGQCAIIMFDVTARL--TYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYN 159 (176)
Q Consensus 82 ~~~~~~~~i~v~d~~~~~--s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~ 159 (176)
+...+|++++|+|++++. +++....|+..+.....+.|+++|+||+|+.......+...++...+++++++||++|+|
T Consensus 243 ~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~iSA~~g~g 322 (357)
T 2e87_A 243 LRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFKDLPFLVVINKIDVADEENIKRLEKFVKEKGLNPIKISALKGTG 322 (357)
T ss_dssp GGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTTTSCEEEEECCTTTCCHHHHHHHHHHHHHTTCCCEECBTTTTBT
T ss_pred HHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcCCCCEEEEEECcccCChHHHHHHHHHHHhcCCCeEEEeCCCCcC
Confidence 445689999999998876 667777888877765558999999999999865444455566777889999999999999
Q ss_pred hHHHHHHHHHHHhc
Q 030504 160 FEKPFLYLARKLAG 173 (176)
Q Consensus 160 v~~~~~~l~~~i~~ 173 (176)
++++++++.+.+.+
T Consensus 323 i~~l~~~i~~~l~~ 336 (357)
T 2e87_A 323 IDLVKEEIIKTLRP 336 (357)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999988753
|
| >1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.94 E-value=1.4e-27 Score=161.69 Aligned_cols=140 Identities=17% Similarity=0.178 Sum_probs=100.3
Q ss_pred CCCeeEEEEEcCCCCcHHHHHHHHhcCCCCCc---cccceeEEEeEEEEEecCcEEEEEEEeCCCcccccccccccccc-
Q 030504 10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKK---YEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIH- 85 (176)
Q Consensus 10 ~~~~~~i~i~G~~~~GKttl~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~- 85 (176)
....++|+++|++|+|||||++++..+.+... +.++.+.++ ....+.+|||||++.++..+..+++.
T Consensus 9 ~~~~~~i~~~G~~g~GKTsl~~~l~~~~~~~~~~~~~~~~~~~~---------~~~~~~l~Dt~G~~~~~~~~~~~~~~~ 79 (218)
T 1nrj_B 9 KSYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADY---------DGSGVTLVDFPGHVKLRYKLSDYLKTR 79 (218)
T ss_dssp -CCCCEEEEECSTTSSHHHHHHHHHHSSCCCBCCCSSCEEETTG---------GGSSCEEEECCCCGGGTHHHHHHHHHH
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHhcCCCCCeeeecCceEEEEe---------eCceEEEEECCCcHHHHHHHHHHHHhc
Confidence 45679999999999999999999988876542 333333211 45578999999999998888888877
Q ss_pred ---ccEEEEEEeCC-ChhhhhhHHHHHHHHhhh-----cCCCCEEEEEeCCCCCccccC--------HHHHHHHHHcCCe
Q 030504 86 ---GQCAIIMFDVT-ARLTYKNVPTWHRDLCRV-----CENIPIVLCGNKVDVKNRQVK--------AKQVTFHRKKNLQ 148 (176)
Q Consensus 86 ---~~~~i~v~d~~-~~~s~~~~~~~~~~~~~~-----~~~~p~liv~nK~Dl~~~~~~--------~~~~~~~~~~~~~ 148 (176)
++++++|+|++ ++.++.....|+..+... ..+.|+++|+||+|+...... .+...++...++.
T Consensus 80 ~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~ 159 (218)
T 1nrj_B 80 AKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARPPSKIKDALESEIQKVIERRKKS 159 (218)
T ss_dssp GGGEEEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCCEEEEEEECCCChHHHHHHHHHHHHHHhcccccccCCCCEEEEEEchHhcccCCHHHHHHHHHHHHHHHHHHHhcc
Confidence 89999999999 888888888887777543 258999999999999764432 2233444444556
Q ss_pred EEEeccCCCC
Q 030504 149 YYEISAKSNY 158 (176)
Q Consensus 149 ~~~~S~~~~~ 158 (176)
++++|++++.
T Consensus 160 ~~~~Sa~~~~ 169 (218)
T 1nrj_B 160 LNEVERKINE 169 (218)
T ss_dssp HHC-------
T ss_pred cccccccccc
Confidence 6666666554
|
| >3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=2.7e-25 Score=162.85 Aligned_cols=164 Identities=16% Similarity=0.098 Sum_probs=114.8
Q ss_pred CCCCCeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEE-------E---------Ee---cCcEEEEEEEe
Q 030504 8 TVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLD-------F---------FT---NCGKIRFYCWD 68 (176)
Q Consensus 8 ~~~~~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~-------~---------~~---~~~~~~~~~~D 68 (176)
+...+.+||+++|++++|||||++++........ ......+..... . .. ......+.+||
T Consensus 3 ~~~~~~~~I~vvG~~~~GKSTLi~~L~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiD 81 (403)
T 3sjy_A 3 PKVQPEVNIGVVGHVDHGKTTLVQAITGIWTSKK-LGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRRISFID 81 (403)
T ss_dssp CCCCCCCEEEEECSTTSSHHHHHHHHHSCCCCSS-SEEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEEEEEEEEE
T ss_pred CccCCCcEEEEECCCCCCHHHHHHHHhCcccccc-cCccccceeeccccccccceecccccccccccccccccceEEEEE
Confidence 3456789999999999999999999775432221 000010100000 0 00 11236899999
Q ss_pred CCCccccccccccccccccEEEEEEeCCChhhhhhHHHHHHHHhhhcCCCCEEEEEeCCCCCccccCHH----HHHHHHH
Q 030504 69 TAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAK----QVTFHRK 144 (176)
Q Consensus 69 ~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~~~~~~~~----~~~~~~~ 144 (176)
|||++.+...+...+..+|++++|+|++++.++.....++..+... ...|+++++||+|+.+.....+ ..++...
T Consensus 82 tPGh~~~~~~~~~~~~~~D~~ilVvda~~~~~~~qt~~~~~~~~~~-~~~~iivviNK~Dl~~~~~~~~~~~~i~~~l~~ 160 (403)
T 3sjy_A 82 APGHEVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGII-GVKNLIIVQNKVDVVSKEEALSQYRQIKQFTKG 160 (403)
T ss_dssp CCCCGGGHHHHHHHHTTCSEEEEEEETTSCSSCHHHHHHHHHHHHH-TCCCEEEEEECGGGSCHHHHHHHHHHHHHHHTT
T ss_pred CCCcHHHHHHHHHHHhhCCEEEEEEECCCCCCcHHHHHHHHHHHHc-CCCCEEEEEECccccchHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999887566666666555443 2468999999999976432222 2222222
Q ss_pred c---CCeEEEeccCCCCChHHHHHHHHHHHhc
Q 030504 145 K---NLQYYEISAKSNYNFEKPFLYLARKLAG 173 (176)
Q Consensus 145 ~---~~~~~~~S~~~~~~v~~~~~~l~~~i~~ 173 (176)
. +++++++||++|.|+++++++|.+.+..
T Consensus 161 ~~~~~~~ii~vSA~~g~gi~~L~~~l~~~l~~ 192 (403)
T 3sjy_A 161 TWAENVPIIPVSALHKINIDSLIEGIEEYIKT 192 (403)
T ss_dssp STTTTCCEEECBTTTTBSHHHHHHHHHHHSCC
T ss_pred hCCCCCEEEEEECCCCcChHHHHHHHHHhCCC
Confidence 2 5789999999999999999999987653
|
| >2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.93 E-value=2e-26 Score=170.40 Aligned_cols=159 Identities=14% Similarity=0.137 Sum_probs=107.9
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCcc----------ccccccc
Q 030504 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE----------KFGGLRD 80 (176)
Q Consensus 11 ~~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~----------~~~~~~~ 80 (176)
...+||+++|.+|||||||+|+++...... ..+..|++...........+..+.+|||||+. .+.....
T Consensus 173 ~~~~ki~lvG~~nvGKSSLin~l~~~~~~~-~~~~~gtT~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~e~~~~~~~ 251 (436)
T 2hjg_A 173 EEVIQFCLIGRPNVGKSSLVNAMLGEERVI-VSNVAGTTRDAVDTSFTYNQQEFVIVDTAGMRKKGKVYETTEKYSVLRA 251 (436)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHTSTTEE-EC---------CCEEEEETTEEEEETTHHHHTCBTTBCCCCSHHHHHHH
T ss_pred ccCcEEEEEcCCCCCHHHHHHHHhCCCcee-ecCCCCceeeeeEEEEEECCeEEEEEECCCcCcCccccchHHHHHHHHH
Confidence 456999999999999999999988765421 12233334443322222233458999999973 3332222
Q ss_pred -cccccccEEEEEEeCCChhhhhhHHHHHHHHhhhcCCCCEEEEEeCCCCCccccC--HHHH-HHHH----HcCCeEEEe
Q 030504 81 -GYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVK--AKQV-TFHR----KKNLQYYEI 152 (176)
Q Consensus 81 -~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~~~~~~--~~~~-~~~~----~~~~~~~~~ 152 (176)
.+++.+|++++|+|++++.+++.. .|...+.. .+.|+++|+||+|+...... .+.. .+.+ ..+++++++
T Consensus 252 ~~~~~~ad~~llv~D~~~~~s~~~~-~~~~~~~~--~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 328 (436)
T 2hjg_A 252 LKAIDRSEVVAVVLDGEEGIIEQDK-RIAGYAHE--AGKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQFLDYAPILFM 328 (436)
T ss_dssp HHHHHHCSEEEEEEETTTCCCHHHH-HHHHHHHH--TTCEEEEEEECGGGSCCCTTHHHHHHHHHHHHCGGGTTSCEEEC
T ss_pred HHHHHhCCEEEEEEcCCcCCcHHHH-HHHHHHHH--cCCcEEEEEECccCCCcchHHHHHHHHHHHHhcccCCCCCEEEE
Confidence 367889999999999998877765 45555554 38999999999999764332 1221 2222 236899999
Q ss_pred ccCCCCChHHHHHHHHHHHhc
Q 030504 153 SAKSNYNFEKPFLYLARKLAG 173 (176)
Q Consensus 153 S~~~~~~v~~~~~~l~~~i~~ 173 (176)
||++|.|++++|.++.+.+.+
T Consensus 329 SA~tg~~v~~l~~~i~~~~~~ 349 (436)
T 2hjg_A 329 SALTKKRIHTLMPAIIKASEN 349 (436)
T ss_dssp CTTTCTTGGGHHHHHHHHHHH
T ss_pred ecccCCCHHHHHHHHHHHHHH
Confidence 999999999999999887653
|
| >1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1 | Back alignment and structure |
|---|
Probab=99.93 E-value=6.3e-26 Score=167.84 Aligned_cols=151 Identities=17% Similarity=0.190 Sum_probs=100.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCcccc---------cccccccccc
Q 030504 15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKF---------GGLRDGYYIH 85 (176)
Q Consensus 15 ~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~---------~~~~~~~~~~ 85 (176)
+|+++|.+|||||||+|++.+++.. ....+.|++...........+..+.+|||||.+.. ...+..+++.
T Consensus 3 ~v~ivG~pnvGKStL~nrl~~~~~~-~v~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~~ 81 (439)
T 1mky_A 3 TVLIVGRPNVGKSTLFNKLVKKKKA-IVEDEEGVTRDPVQDTVEWYGKTFKLVDTCGVFDNPQDIISQKMKEVTLNMIRE 81 (439)
T ss_dssp EEEEECCTTSSHHHHHHHHHC---------------CCSEEEEEETTEEEEEEECTTTTSSGGGCCCHHHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCc-eecCCCCCccceeeEEEEECCeEEEEEECCCccccccchHHHHHHHHHHHHHHh
Confidence 7999999999999999998876642 12344555555444333333456899999997642 2345567899
Q ss_pred ccEEEEEEeCCChhhhhh--HHHHHHHHhhhcCCCCEEEEEeCCCCCccccCHHH-HHHHHHcCC-eEEEeccCCCCChH
Q 030504 86 GQCAIIMFDVTARLTYKN--VPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQ-VTFHRKKNL-QYYEISAKSNYNFE 161 (176)
Q Consensus 86 ~~~~i~v~d~~~~~s~~~--~~~~~~~~~~~~~~~p~liv~nK~Dl~~~~~~~~~-~~~~~~~~~-~~~~~S~~~~~~v~ 161 (176)
+|++++|+|++++.+... +..|+ ... ++|+++|+||+|+.... ..+. .+++ ..++ .++++||++|.|++
T Consensus 82 ad~il~V~D~~~~~~~~d~~i~~~l---~~~--~~p~ilv~NK~D~~~~~-~~~~~~~~~-~lg~~~~~~iSA~~g~gv~ 154 (439)
T 1mky_A 82 ADLVLFVVDGKRGITKEDESLADFL---RKS--TVDTILVANKAENLREF-EREVKPELY-SLGFGEPIPVSAEHNINLD 154 (439)
T ss_dssp CSEEEEEEETTTCCCHHHHHHHHHH---HHH--TCCEEEEEESCCSHHHH-HHHTHHHHG-GGSSCSCEECBTTTTBSHH
T ss_pred CCEEEEEEECCCCCCHHHHHHHHHH---HHc--CCCEEEEEeCCCCcccc-HHHHHHHHH-hcCCCCEEEEeccCCCCHH
Confidence 999999999987644322 22332 222 89999999999986431 1222 3333 5666 78999999999999
Q ss_pred HHHHHHHHHHhc
Q 030504 162 KPFLYLARKLAG 173 (176)
Q Consensus 162 ~~~~~l~~~i~~ 173 (176)
++++++++.+.+
T Consensus 155 ~L~~~i~~~l~~ 166 (439)
T 1mky_A 155 TMLETIIKKLEE 166 (439)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHhccc
Confidence 999999988764
|
| >1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ... | Back alignment and structure |
|---|
Probab=99.93 E-value=2.4e-25 Score=159.68 Aligned_cols=115 Identities=13% Similarity=0.125 Sum_probs=94.7
Q ss_pred cEEEEEEEeCCCccccccccccccccccEEEEEEeCCC----------hhhhhhHHHHHHHHhhh--cCCCCEEEEEeCC
Q 030504 60 GKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTA----------RLTYKNVPTWHRDLCRV--CENIPIVLCGNKV 127 (176)
Q Consensus 60 ~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~----------~~s~~~~~~~~~~~~~~--~~~~p~liv~nK~ 127 (176)
..+.+.+|||+|++.++..|..++++++++|+|||+++ ..+++....|+..+... ..+.|+++++||+
T Consensus 191 ~~~~l~iwDt~GQe~~r~~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~i~~~~~~~~~piiLv~NK~ 270 (353)
T 1cip_A 191 KDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKK 270 (353)
T ss_dssp TTEEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEEEEEECH
T ss_pred CCeeEEEEeCCCchhhhHHHHHHHhcCCEEEEEEECccccccccccchhhhHHHHHHHHHHHHcCccccCCcEEEEEECc
Confidence 46789999999999999999999999999999999998 45677777787777653 4689999999999
Q ss_pred CCCcc-----------------ccCHHHHHHHH-----------HcCCeEEEeccCCCCChHHHHHHHHHHHhcC
Q 030504 128 DVKNR-----------------QVKAKQVTFHR-----------KKNLQYYEISAKSNYNFEKPFLYLARKLAGS 174 (176)
Q Consensus 128 Dl~~~-----------------~~~~~~~~~~~-----------~~~~~~~~~S~~~~~~v~~~~~~l~~~i~~~ 174 (176)
|+..+ ....+...++. ..++.+++|||+++.||+++|.++++.+.+.
T Consensus 271 DL~~~ki~~~~l~~~fp~~~g~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~etSA~~~~nV~~vF~~v~~~i~~~ 345 (353)
T 1cip_A 271 DLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVIIKN 345 (353)
T ss_dssp HHHHHHHTTSCGGGTCTTCCSCSCHHHHHHHHHHHHHTTCSCTTTCCEEEEECCTTCHHHHHHHHHHHHHHHHHH
T ss_pred CchhhhccccchhhcccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEECcCchhHHHHHHHHHHHHHHH
Confidence 98532 12234455554 3568899999999999999999999987653
|
| >3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C* | Back alignment and structure |
|---|
Probab=99.93 E-value=2.4e-25 Score=168.94 Aligned_cols=159 Identities=14% Similarity=0.155 Sum_probs=113.2
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHhcC--CCCC-----c------cccceeEEEeEEEEEe-----cCcEEEEEEEeCCCcc
Q 030504 12 PSFKLVIVGDGGTGKTTFVKRHLTG--EFEK-----K------YEPTIGVEVHPLDFFT-----NCGKIRFYCWDTAGQE 73 (176)
Q Consensus 12 ~~~~i~i~G~~~~GKttl~~~~~~~--~~~~-----~------~~~~~~~~~~~~~~~~-----~~~~~~~~~~D~~g~~ 73 (176)
...||+|+|+.++|||||+++++.. .... . .....|.+........ ++..+.+.+|||||++
T Consensus 3 ~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGiTi~~~~~~~~~~~~~g~~~~l~liDTPGh~ 82 (599)
T 3cb4_D 3 NIRNFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDTPGHV 82 (599)
T ss_dssp TEEEEEEECCC----CCHHHHHHHHTTC--------------------------CEEEEEEECTTSCEEEEEEEECCCCG
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcCCcccccccccccccchhhhcccceeeeeEEEEEEecCCCCeEEEEEEECCCch
Confidence 4579999999999999999998752 2111 0 1112344444333322 4457899999999999
Q ss_pred ccccccccccccccEEEEEEeCCChhhhhhHHHHHHHHhhhcCCCCEEEEEeCCCCCccccCHHHHHHHHHcCC---eEE
Q 030504 74 KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNL---QYY 150 (176)
Q Consensus 74 ~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~~~~~~~~~~~~~~~~~~---~~~ 150 (176)
.+...+...+..+|++++|+|++++.+.+....|..... .+.|+++++||+|+..........++....++ .++
T Consensus 83 dF~~ev~~~l~~aD~aILVVDa~~gv~~qt~~~~~~~~~---~~ipiIvViNKiDl~~a~~~~v~~ei~~~lg~~~~~vi 159 (599)
T 3cb4_D 83 DFSYEVSRSLAACEGALLVVDAGQGVEAQTLANCYTAME---MDLEVVPVLNKIDLPAADPERVAEEIEDIVGIDATDAV 159 (599)
T ss_dssp GGHHHHHHHHHHCSEEEEEEETTTCCCTHHHHHHHHHHH---TTCEEEEEEECTTSTTCCHHHHHHHHHHHTCCCCTTCE
T ss_pred HHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHH---CCCCEEEeeeccCcccccHHHHHHHHHHHhCCCcceEE
Confidence 999888899999999999999999887777777765543 28899999999999875543334455556665 499
Q ss_pred EeccCCCCChHHHHHHHHHHHhc
Q 030504 151 EISAKSNYNFEKPFLYLARKLAG 173 (176)
Q Consensus 151 ~~S~~~~~~v~~~~~~l~~~i~~ 173 (176)
++||++|.|++++++++++.+..
T Consensus 160 ~vSAktg~GI~~Ll~~I~~~lp~ 182 (599)
T 3cb4_D 160 RCSAKTGVGVQDVLERLVRDIPP 182 (599)
T ss_dssp EECTTTCTTHHHHHHHHHHHSCC
T ss_pred EeecccCCCchhHHHHHhhcCCC
Confidence 99999999999999999988764
|
| >4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=1.2e-25 Score=167.10 Aligned_cols=160 Identities=16% Similarity=0.142 Sum_probs=108.5
Q ss_pred CCCeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCC----------cccccccc
Q 030504 10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAG----------QEKFGGLR 79 (176)
Q Consensus 10 ~~~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g----------~~~~~~~~ 79 (176)
....+||+++|.+++|||||+++++..... ...+..|++.......+...+..+.+||||| ++.+....
T Consensus 192 ~~~~~ki~ivG~~~vGKSslin~l~~~~~~-~~~~~~gtt~~~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~e~~~~~~ 270 (456)
T 4dcu_A 192 NEEVIQFCLIGRPNVGKSSLVNAMLGEERV-IVSNVAGTTRDAVDTSFTYNQQEFVIVDTAGMRKKGKVYETTEKYSVLR 270 (456)
T ss_dssp CTTCEEEEEECSTTSSHHHHHHHHHTSTTE-EECC------CTTSEEEEETTEEEEETTGGGTTTBTTBCCCCSHHHHHH
T ss_pred ccccceeEEecCCCCCHHHHHHHHhCCCcc-ccCCCCCeEEEEEEEEEEECCceEEEEECCCCCcCcccchHHHHHHHHH
Confidence 346799999999999999999998754321 1223334444433222222334789999999 45555443
Q ss_pred c-cccccccEEEEEEeCCChhhhhhHHHHHHHHhhhcCCCCEEEEEeCCCCCccccC--HHHHHHHHHc-----CCeEEE
Q 030504 80 D-GYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVK--AKQVTFHRKK-----NLQYYE 151 (176)
Q Consensus 80 ~-~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~~~~~~--~~~~~~~~~~-----~~~~~~ 151 (176)
. .+++.+|++++|+|++++...+ ...|...+.+ .++|+++|+||+|+...... .+..+.++.. ++++++
T Consensus 271 ~~~~~~~ad~~llviD~~~~~~~~-~~~~~~~~~~--~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (456)
T 4dcu_A 271 ALKAIDRSEVVAVVLDGEEGIIEQ-DKRIAGYAHE--AGKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQFLDYAPILF 347 (456)
T ss_dssp HHHHHHHCSEEEEEEETTTCCCHH-HHHHHHHHHH--TTCEEEEEEECGGGSCCCSSHHHHHHHHHHHHCGGGTTSCEEE
T ss_pred HHHHHhhCCEEEEEEeCCCCcCHH-HHHHHHHHHH--cCCCEEEEEEChhcCCCchHHHHHHHHHHHHhcccCCCCCEEE
Confidence 3 3678899999999998754322 2344444444 38999999999999764332 3334444443 589999
Q ss_pred eccCCCCChHHHHHHHHHHHhc
Q 030504 152 ISAKSNYNFEKPFLYLARKLAG 173 (176)
Q Consensus 152 ~S~~~~~~v~~~~~~l~~~i~~ 173 (176)
+||++|.|++++|+++.+.+.+
T Consensus 348 ~SA~~g~gv~~l~~~i~~~~~~ 369 (456)
T 4dcu_A 348 MSALTKKRIHTLMPAIIKASEN 369 (456)
T ss_dssp CCTTTCTTGGGHHHHHHHHHHH
T ss_pred EcCCCCcCHHHHHHHHHHHHHH
Confidence 9999999999999999987653
|
| >2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.93 E-value=4.5e-26 Score=168.49 Aligned_cols=154 Identities=20% Similarity=0.195 Sum_probs=102.4
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCcc--------ccccccccccc
Q 030504 13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE--------KFGGLRDGYYI 84 (176)
Q Consensus 13 ~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~--------~~~~~~~~~~~ 84 (176)
..+|+++|.+|||||||+|++.+.+.. ...++.|+++..........+..+.+|||||++ .+...+..+++
T Consensus 3 ~~~V~ivG~~nvGKStL~n~l~~~~~~-~v~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~ 81 (436)
T 2hjg_A 3 KPVVAIVGRPNVGKSTIFNRIAGERIS-IVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAMD 81 (436)
T ss_dssp CCEEEEECSTTSSHHHHHHHHEEEECC------------CEEEECTTCSSCCEEEC---------CHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCce-eecCCCCCccceEEEEEEECCceEEEEECCCCCCcchhHHHHHHHHHHHHHH
Confidence 368999999999999999998766553 345677777777777666666789999999986 45556677889
Q ss_pred cccEEEEEEeCCChhhhhhHHHHHHHHhhhcCCCCEEEEEeCCCCCccccCHHHHHHHHHcCC-eEEEeccCCCCChHHH
Q 030504 85 HGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNL-QYYEISAKSNYNFEKP 163 (176)
Q Consensus 85 ~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~S~~~~~~v~~~ 163 (176)
.+|++++|+|+.++.+.... .+...+.. .++|+++|+||+|+..... +..+++ ..++ .++++||++|.|++++
T Consensus 82 ~ad~il~vvD~~~~~~~~d~-~~~~~l~~--~~~pvilv~NK~D~~~~~~--~~~~~~-~lg~~~~~~iSA~~g~gv~~L 155 (436)
T 2hjg_A 82 EADVIIFMVNGREGVTAADE-EVAKILYR--TKKPVVLAVNKLDNTEMRA--NIYDFY-SLGFGEPYPISGTHGLGLGDL 155 (436)
T ss_dssp HCSEEEEEEETTTCSCHHHH-HHHHHHTT--CCSCEEEEEECCCC-------CCCSSG-GGSSCCCEECBTTTTBTHHHH
T ss_pred hCCEEEEEEeCCCCCCHHHH-HHHHHHHH--cCCCEEEEEECccCccchh--hHHHHH-HcCCCCeEEEeCcCCCChHHH
Confidence 99999999999887554332 22223333 4899999999999875421 111222 3455 7899999999999999
Q ss_pred HHHHHHHHhc
Q 030504 164 FLYLARKLAG 173 (176)
Q Consensus 164 ~~~l~~~i~~ 173 (176)
++++.+.+.+
T Consensus 156 ~~~i~~~l~~ 165 (436)
T 2hjg_A 156 LDAVAEHFKN 165 (436)
T ss_dssp HHHHHHTGGG
T ss_pred HHHHHHhcCc
Confidence 9999998864
|
| >1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8 | Back alignment and structure |
|---|
Probab=99.93 E-value=1.6e-25 Score=160.10 Aligned_cols=158 Identities=17% Similarity=0.181 Sum_probs=112.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccc----cccccccccc---ccc
Q 030504 15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK----FGGLRDGYYI---HGQ 87 (176)
Q Consensus 15 ~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~----~~~~~~~~~~---~~~ 87 (176)
+|+++|.++||||||++++...+......+....+.....+..++ ...+.+|||||+.. +..+...+++ +++
T Consensus 160 ~V~lvG~~nvGKSTLln~L~~~~~~i~~~~ftTl~p~~g~v~~~~-~~~~~l~DtPG~i~~a~~~~~l~~~fl~~i~~~d 238 (342)
T 1lnz_A 160 DVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGMVETDD-GRSFVMADLPGLIEGAHQGVGLGHQFLRHIERTR 238 (342)
T ss_dssp CEEEESSTTSSHHHHHHHSEEECCEESSTTSSCCCCCEEEEECSS-SCEEEEEEHHHHHHHTTCTTTTHHHHHHHHHHCC
T ss_pred eeeeeCCCCCCHHHHHHHHHcCCCccccCCccccCceEEEEEeCC-CceEEEecCCCCcccccccchhHHHHHHHHHhcc
Confidence 688999999999999999876543211111111111112233332 24789999999643 3334444444 599
Q ss_pred EEEEEEeCCC---hhhhhhHHHHHHHHhhhc---CCCCEEEEEeCCCCCccccCHHHHHHHHHcC--CeEEEeccCCCCC
Q 030504 88 CAIIMFDVTA---RLTYKNVPTWHRDLCRVC---ENIPIVLCGNKVDVKNRQVKAKQVTFHRKKN--LQYYEISAKSNYN 159 (176)
Q Consensus 88 ~~i~v~d~~~---~~s~~~~~~~~~~~~~~~---~~~p~liv~nK~Dl~~~~~~~~~~~~~~~~~--~~~~~~S~~~~~~ 159 (176)
++++|+|+++ +.+++.+..|...+.... .++|+++|+||+|+.... .....+.+... ++++++||+++.|
T Consensus 239 ~ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~~~l~~~p~ilV~NK~Dl~~~~--e~~~~l~~~l~~~~~v~~iSA~tg~g 316 (342)
T 1lnz_A 239 VIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMPEAA--ENLEAFKEKLTDDYPVFPISAVTREG 316 (342)
T ss_dssp EEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTSTTHH--HHHHHHHHHCCSCCCBCCCSSCCSST
T ss_pred EEEEEEECCcccccChHHHHHHHHHHHHHhhhhhcCCCEEEEEECccCCCCH--HHHHHHHHHhhcCCCEEEEECCCCcC
Confidence 9999999998 778888888888777653 489999999999997543 23345555555 7899999999999
Q ss_pred hHHHHHHHHHHHhcCC
Q 030504 160 FEKPFLYLARKLAGST 175 (176)
Q Consensus 160 v~~~~~~l~~~i~~~~ 175 (176)
+++++.+|.+.+.+.+
T Consensus 317 i~eL~~~l~~~l~~~~ 332 (342)
T 1lnz_A 317 LRELLFEVANQLENTP 332 (342)
T ss_dssp THHHHHHHHHHHTSCC
T ss_pred HHHHHHHHHHHHhhCc
Confidence 9999999999987654
|
| >3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=4.7e-25 Score=156.08 Aligned_cols=115 Identities=13% Similarity=0.087 Sum_probs=91.9
Q ss_pred cEEEEEEEeCCCccccccccccccccccEEEEEEeCC----------ChhhhhhHHHHHHHHhhh--cCCCCEEEEEeCC
Q 030504 60 GKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVT----------ARLTYKNVPTWHRDLCRV--CENIPIVLCGNKV 127 (176)
Q Consensus 60 ~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~----------~~~s~~~~~~~~~~~~~~--~~~~p~liv~nK~ 127 (176)
+.+.+++|||+|+++++..|..++++++++|+|||++ +..+++....|+..+... ..+.|+++++||+
T Consensus 165 ~~v~l~iwDtgGQe~~R~~w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~~~~~~i~~~~~~~~~~iiL~~NK~ 244 (327)
T 3ohm_A 165 QSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFLNKK 244 (327)
T ss_dssp TTEEEEEEEECCSHHHHTTGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTSGGGTTCEEEEEEECH
T ss_pred eceeeEEEEcCCchhHHHHHHHHhCCCCEEEEEEECccccccccccccHhHHHHHHHHHHHHhhhhccCCceEEEEEECc
Confidence 5688999999999999999999999999999999765 455666666777766543 3689999999999
Q ss_pred CCCccc------------------cCHHHHHHH----------HHcCCeEEEeccCCCCChHHHHHHHHHHHhcC
Q 030504 128 DVKNRQ------------------VKAKQVTFH----------RKKNLQYYEISAKSNYNFEKPFLYLARKLAGS 174 (176)
Q Consensus 128 Dl~~~~------------------~~~~~~~~~----------~~~~~~~~~~S~~~~~~v~~~~~~l~~~i~~~ 174 (176)
|+..+. ...++.++. ...++.+++|||+++.||+++|..+.+.|.++
T Consensus 245 DL~~~ki~~~~l~~~fp~y~g~~~~~e~a~~fi~~~F~~~~~~~~~~i~~~~TsA~d~~nV~~vF~~v~~~Il~~ 319 (327)
T 3ohm_A 245 DLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTCATDTENIRFVFAAVKDTILQL 319 (327)
T ss_dssp HHHHHHTTTSCGGGTCTTCCSCSSCHHHHHHHHHHHHHSSCTTTTSCEEEEECCTTCHHHHHHHHHHHHHHHHHT
T ss_pred hhhhhhhccchHhhhchhccCCCCCHHHHHHHHHHHHHhhcccccCCcEEEEEEeecCHHHHHHHHHHHHHHHHH
Confidence 986532 222344442 34567899999999999999999999988764
|
| >1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B* | Back alignment and structure |
|---|
Probab=99.92 E-value=8e-26 Score=168.01 Aligned_cols=152 Identities=21% Similarity=0.205 Sum_probs=106.1
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCCCC-CccccceeEEEeEEEEEecCcEEEEEEEeCCCcc-ccccc--------cccc
Q 030504 13 SFKLVIVGDGGTGKTTFVKRHLTGEFE-KKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE-KFGGL--------RDGY 82 (176)
Q Consensus 13 ~~~i~i~G~~~~GKttl~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~-~~~~~--------~~~~ 82 (176)
.++|+++|.+|+|||||+|++...... ....+....+.....+.. .+..+.+|||||.. .+... ...+
T Consensus 243 ~~kV~ivG~pnvGKSSLln~L~~~~~a~vs~~~gTT~d~~~~~i~~--~g~~~~l~DTaG~~~~~~~~ve~~gi~~~~~~ 320 (482)
T 1xzp_A 243 GLRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVI--RGILFRIVDTAGVRSETNDLVERLGIERTLQE 320 (482)
T ss_dssp CEEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEE--TTEEEEEEESSCCCSSCCTTCCCCCHHHHHHH
T ss_pred CCEEEEECcCCCcHHHHHHHHHCCCCCccCCCCCeeeeeEEEEEec--CCeEEEEEECCCccccchhhHHHHHHHHHHHH
Confidence 489999999999999999998876432 111222222222333333 34578999999987 55421 2456
Q ss_pred cccccEEEEEEeCCChhhhhhHHHHHHHHhhhcCCCCEEEEEeCCCCCccccCHHHHHHHHHcCCeEEEeccCCCCChHH
Q 030504 83 YIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEK 162 (176)
Q Consensus 83 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~ 162 (176)
+..+|++++|+|++++.+++... +++.+ .+.|+++|+||+|+.......+...++ ..+++++++||++|.|+++
T Consensus 321 ~~~aD~vl~VvD~s~~~s~~~~~-il~~l----~~~piivV~NK~DL~~~~~~~~~~~~~-~~~~~~i~iSAktg~Gi~e 394 (482)
T 1xzp_A 321 IEKADIVLFVLDASSPLDEEDRK-ILERI----KNKRYLVVINKVDVVEKINEEEIKNKL-GTDRHMVKISALKGEGLEK 394 (482)
T ss_dssp HHHCSEEEEEEETTSCCCHHHHH-HHHHH----TTSSEEEEEEECSSCCCCCHHHHHHHH-TCSTTEEEEEGGGTCCHHH
T ss_pred hhcccEEEEEecCCCCCCHHHHH-HHHHh----cCCCEEEEEECcccccccCHHHHHHHh-cCCCcEEEEECCCCCCHHH
Confidence 78999999999999887665432 22222 488999999999997542222222322 2447899999999999999
Q ss_pred HHHHHHHHHh
Q 030504 163 PFLYLARKLA 172 (176)
Q Consensus 163 ~~~~l~~~i~ 172 (176)
++++|.+.+.
T Consensus 395 L~~~l~~~~~ 404 (482)
T 1xzp_A 395 LEESIYRETQ 404 (482)
T ss_dssp HHHHHHHHTH
T ss_pred HHHHHHHHHh
Confidence 9999998754
|
| >2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A | Back alignment and structure |
|---|
Probab=99.92 E-value=3.6e-25 Score=153.62 Aligned_cols=167 Identities=10% Similarity=0.059 Sum_probs=103.5
Q ss_pred CCCCCeeEEEEEcCCCCcHHHHHHHHhcCC-CCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccc------
Q 030504 8 TVDYPSFKLVIVGDGGTGKTTFVKRHLTGE-FEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRD------ 80 (176)
Q Consensus 8 ~~~~~~~~i~i~G~~~~GKttl~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~------ 80 (176)
.+....++|+|+|.+|||||||+++++... +.....++ +++...........+..+.+|||||+..+.....
T Consensus 17 ~~~~~~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~~~~-~~t~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~~~~~~i 95 (260)
T 2xtp_A 17 CASRSELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQ-TLTKTCSKSQGSWGNREIVIIDTPDMFSWKDHCEALYKEV 95 (260)
T ss_dssp ----CCEEEEEEECTTSCHHHHHHHHHTSCCSCCCTTSC-CCCCSCEEEEEEETTEEEEEEECCGGGGSSCCCHHHHHHH
T ss_pred CCCCCceEEEEECCCCCCHHHHHHHHhCCCCcccCCCCC-ceeeeeEEEEEEeCCCEEEEEECcCCCCCCCCHHHHHHHH
Confidence 345567999999999999999999988766 33333332 1222222222222446789999999876543222
Q ss_pred -----cccccccEEEEEEeCCChhh-hhhHHHHHHHHhhhcCCCCEEEEEe-CCCCCccccCH--------HHHHHHHHc
Q 030504 81 -----GYYIHGQCAIIMFDVTARLT-YKNVPTWHRDLCRVCENIPIVLCGN-KVDVKNRQVKA--------KQVTFHRKK 145 (176)
Q Consensus 81 -----~~~~~~~~~i~v~d~~~~~s-~~~~~~~~~~~~~~~~~~p~liv~n-K~Dl~~~~~~~--------~~~~~~~~~ 145 (176)
.+++.+|++++|+|+++... ...+..++..........|.++++| |+|+....... +...+....
T Consensus 96 ~~~~~~~~~~~d~il~V~d~~~~~~~~~~~~~~l~~~~~~~~~~~~i~vv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~ 175 (260)
T 2xtp_A 96 QRCYLLSAPGPHVLLLVTQLGRYTSQDQQAAQRVKEIFGEDAMGHTIVLFTHKEDLNGGSLMDYMHDSDNKALSKLVAAC 175 (260)
T ss_dssp HHHHHHHTTCCSEEEEEEETTCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECGGGGTTCCHHHHHHHCCCHHHHHHHHHT
T ss_pred HHHHHhcCCCCcEEEEEEeCCCCCHHHHHHHHHHHHHhCchhhccEEEEEEcccccCCccHHHHHHhcchHHHHHHHHHh
Confidence 25678999999999986221 1122233332221111456666666 99997543221 122355555
Q ss_pred CCe---E--EEeccCCCCChHHHHHHHHHHHhcCC
Q 030504 146 NLQ---Y--YEISAKSNYNFEKPFLYLARKLAGST 175 (176)
Q Consensus 146 ~~~---~--~~~S~~~~~~v~~~~~~l~~~i~~~~ 175 (176)
+.. + +++||+++.|++++|+++.+.+.+.+
T Consensus 176 ~~~~~~~~~~~~SA~~~~gv~~l~~~i~~~~~~~~ 210 (260)
T 2xtp_A 176 GGRICAFNNRAEGSNQDDQVKELMDCIEDLLMEKN 210 (260)
T ss_dssp TTCEEECCTTCCHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CCeEEEecCcccccccHHHHHHHHHHHHHHHHhCC
Confidence 432 2 78999999999999999999887643
|
| >2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=8.5e-25 Score=165.73 Aligned_cols=159 Identities=17% Similarity=0.238 Sum_probs=115.0
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHhc--CCCCCc-----c------ccceeEEEeEEEEEe-----cCcEEEEEEEeCCCcc
Q 030504 12 PSFKLVIVGDGGTGKTTFVKRHLT--GEFEKK-----Y------EPTIGVEVHPLDFFT-----NCGKIRFYCWDTAGQE 73 (176)
Q Consensus 12 ~~~~i~i~G~~~~GKttl~~~~~~--~~~~~~-----~------~~~~~~~~~~~~~~~-----~~~~~~~~~~D~~g~~ 73 (176)
...||+++|+.++|||||+++++. +..... . ....|++........ ++..+.+.+|||||++
T Consensus 5 ~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGITI~~~~~~~~~~~~dg~~~~inliDTPGh~ 84 (600)
T 2ywe_A 5 NVRNFCIIAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKMQAVRMFYKAKDGNTYKLHLIDTPGHV 84 (600)
T ss_dssp GEEEEEEECC--CCHHHHHHHHHHHHTC-----------------------CCCCSEEEEEECTTSCEEEEEEECCCCSG
T ss_pred CceEEEEECCCCCCHHHHHHHHHhccCCcccccccccccccchhhhcccceeeeeEEEEEEEcCCCCeEEEEEEECCCcH
Confidence 467999999999999999999875 222110 0 111233332221111 4456899999999999
Q ss_pred ccccccccccccccEEEEEEeCCChhhhhhHHHHHHHHhhhcCCCCEEEEEeCCCCCccccCHHHHHHHHHcCC---eEE
Q 030504 74 KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNL---QYY 150 (176)
Q Consensus 74 ~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~~~~~~~~~~~~~~~~~~---~~~ 150 (176)
.|...+...+..+|++++|+|++++.+.+....|..... .+.|+++++||+|+..........++....++ .++
T Consensus 85 dF~~ev~r~l~~aD~aILVVDa~~gv~~qt~~~~~~a~~---~~ipiIvviNKiDl~~a~~~~v~~el~~~lg~~~~~vi 161 (600)
T 2ywe_A 85 DFSYEVSRALAACEGALLLIDASQGIEAQTVANFWKAVE---QDLVIIPVINKIDLPSADVDRVKKQIEEVLGLDPEEAI 161 (600)
T ss_dssp GGHHHHHHHHHTCSEEEEEEETTTBCCHHHHHHHHHHHH---TTCEEEEEEECTTSTTCCHHHHHHHHHHTSCCCGGGCE
T ss_pred hHHHHHHHHHHhCCEEEEEEECCCCccHHHHHHHHHHHH---CCCCEEEEEeccCccccCHHHHHHHHHHhhCCCcccEE
Confidence 998888888999999999999999888887777765543 38899999999999875543334455555665 489
Q ss_pred EeccCCCCChHHHHHHHHHHHhc
Q 030504 151 EISAKSNYNFEKPFLYLARKLAG 173 (176)
Q Consensus 151 ~~S~~~~~~v~~~~~~l~~~i~~ 173 (176)
++||++|.|++++|+++++.+..
T Consensus 162 ~vSAktg~GI~~Lle~I~~~lp~ 184 (600)
T 2ywe_A 162 LASAKEGIGIEEILEAIVNRIPP 184 (600)
T ss_dssp ECBTTTTBSHHHHHHHHHHHSCC
T ss_pred EEEeecCCCchHHHHHHHHhccc
Confidence 99999999999999999988754
|
| >3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.92 E-value=1.8e-26 Score=172.87 Aligned_cols=157 Identities=17% Similarity=0.146 Sum_probs=112.5
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccccccccccEEEE
Q 030504 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAII 91 (176)
Q Consensus 12 ~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~ 91 (176)
+..+|+++|++++|||||++++....+.....++.+.+.....+..+ ....+.+|||||++.|..++..++..+|++++
T Consensus 3 r~pkV~IvG~~~vGKTSLl~~L~~~~~~~~~~~giT~~i~~~~v~~~-~g~~i~~iDTPGhe~f~~~~~~~~~~aD~vIL 81 (537)
T 3izy_P 3 RSPVVTIMGHVDHGKTTLLDKLRKTQVAAMEAGGITQHIGAFLVSLP-SGEKITFLDTPGHAAFSAMRARGTQVTDIVIL 81 (537)
T ss_dssp CCCBCEEEESTTTTHHHHHHHHHHHHHHHSSSCCBCCCTTSCCBCSS-CSSCCBCEECSSSCCTTTSBBSSSBSBSSCEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcccccCCceeEEEeEEEEEeC-CCCEEEEEECCChHHHHHHHHHHHccCCEEEE
Confidence 46789999999999999999988766544433333322222222221 23368899999999999999999999999999
Q ss_pred EEeCCChhhhhhHHHHHHHHhhhcCCCCEEEEEeCCCCCccccC---HHHHHH---HHHc--CCeEEEeccCCCCChHHH
Q 030504 92 MFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVK---AKQVTF---HRKK--NLQYYEISAKSNYNFEKP 163 (176)
Q Consensus 92 v~d~~~~~s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~~~~~~---~~~~~~---~~~~--~~~~~~~S~~~~~~v~~~ 163 (176)
|+|++++...+....| ..+.. .+.|+++++||+|+...... .+.... +... .++++++||++|.|++++
T Consensus 82 VVDa~dg~~~qt~e~l-~~~~~--~~vPiIVViNKiDl~~~~~~~v~~~l~~~~~~~e~~~~~~~iv~vSAktG~GI~eL 158 (537)
T 3izy_P 82 VVAADDGVMKQTVESI-QHAKD--AHVPIVLAINKCDKAEADPEKVKKELLAYDVVCEDYGGDVQAVHVSALTGENMMAL 158 (537)
T ss_dssp ECBSSSCCCHHHHHHH-HHHHT--TTCCEEECCBSGGGTTTSCCSSSSHHHHTTSCCCCSSSSEEECCCCSSSSCSSHHH
T ss_pred EEECCCCccHHHHHHH-HHHHH--cCCcEEEEEecccccccchHHHHHHHHhhhhhHHhcCCCceEEEEECCCCCCchhH
Confidence 9999987655555433 23333 37899999999999753322 111111 1111 358999999999999999
Q ss_pred HHHHHHHHh
Q 030504 164 FLYLARKLA 172 (176)
Q Consensus 164 ~~~l~~~i~ 172 (176)
|+++...+.
T Consensus 159 le~I~~l~~ 167 (537)
T 3izy_P 159 AEATIALAE 167 (537)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHhhh
Confidence 999998754
|
| >1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 | Back alignment and structure |
|---|
Probab=99.92 E-value=6.2e-24 Score=155.89 Aligned_cols=162 Identities=15% Similarity=0.094 Sum_probs=102.5
Q ss_pred CCCeeEEEEEcCCCCcHHHHHHHHhcC---CCCCcccc--ceeEEEeEEEEEe-------------c--C----cEEEEE
Q 030504 10 DYPSFKLVIVGDGGTGKTTFVKRHLTG---EFEKKYEP--TIGVEVHPLDFFT-------------N--C----GKIRFY 65 (176)
Q Consensus 10 ~~~~~~i~i~G~~~~GKttl~~~~~~~---~~~~~~~~--~~~~~~~~~~~~~-------------~--~----~~~~~~ 65 (176)
..+.+||+++|+.++|||||++++.+. .+..+..+ |....+....... + + ....+.
T Consensus 5 r~~~~~I~iiG~~d~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~ 84 (408)
T 1s0u_A 5 SQAEVNIGMVGHVDHGKTSLTKALTGVWTDRHSEELRRGISIRLGYADCEIRKCPQCGTYTTKPRCPNCLAETEFLRRVS 84 (408)
T ss_dssp CCCCEEEEEESCTTSSHHHHHHHHHSCCCCC-------CCCCCCEEEEEEEEECTTTCCEESSSBCTTSCCBCEEEEEEE
T ss_pred cCCceEEEEEcCCCCCHHHHHHHHhCCccccCcccccCCcEEEecccccccccccccccccccccccccCcccccccEEE
Confidence 356799999999999999999997632 22223223 3333333222211 1 1 137899
Q ss_pred EEeCCCccccccccccccccccEEEEEEeCCChh-hhhhHHHHHHHHhhhcCCCCEEEEEeCCCCCcccc----CHHHHH
Q 030504 66 CWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARL-TYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQV----KAKQVT 140 (176)
Q Consensus 66 ~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~~~~~----~~~~~~ 140 (176)
+|||||++.+...+...+..+|++++|+|++++. ..+...+ +..+. .....|+++++||+|+.+... ..+..+
T Consensus 85 iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~-l~~~~-~l~~~~iivv~NK~Dl~~~~~~~~~~~~i~~ 162 (408)
T 1s0u_A 85 FVDSPGHETLMATMLSGASLMDGAILVIAANEPCPQPQTKEH-LMALE-ILGIDKIIIVQNKIDLVDEKQAEENYEQIKE 162 (408)
T ss_dssp EEECSSHHHHHHHHHTTCSCCSEEEEEEETTSCSSCHHHHHH-HHHHH-HTTCCCEEEEEECTTSSCTTTTTTHHHHHHH
T ss_pred EEECCCHHHHHHHHHHhHhhCCEEEEEEECCCCCCCchhHHH-HHHHH-HcCCCeEEEEEEccCCCCHHHHHHHHHHHHH
Confidence 9999999998877777788899999999999653 1222222 22222 223458999999999976432 123344
Q ss_pred HHHH---cCCeEEEeccCCCCChHHHHHHHHHHHhc
Q 030504 141 FHRK---KNLQYYEISAKSNYNFEKPFLYLARKLAG 173 (176)
Q Consensus 141 ~~~~---~~~~~~~~S~~~~~~v~~~~~~l~~~i~~ 173 (176)
+++. .+++++++||++|+|+++++++|.+.+..
T Consensus 163 ~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~i~~ 198 (408)
T 1s0u_A 163 FVKGTIAENAPIIPISAHHEANIDVLLKAIQDFIPT 198 (408)
T ss_dssp HHTTSTTTTCCEEEC------CHHHHHHHHHHHSCC
T ss_pred HHhhcCCCCCeEEEeeCCCCCCHHHHHHHHHHhCCC
Confidence 5444 36789999999999999999999987653
|
| >2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.92 E-value=4.1e-25 Score=158.41 Aligned_cols=114 Identities=15% Similarity=0.160 Sum_probs=90.3
Q ss_pred cEEEEEEEeCCCccccccccccccccccEEEEEEeCC----------ChhhhhhHHHHHHHHhhh--cCCCCEEEEEeCC
Q 030504 60 GKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVT----------ARLTYKNVPTWHRDLCRV--CENIPIVLCGNKV 127 (176)
Q Consensus 60 ~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~----------~~~s~~~~~~~~~~~~~~--~~~~p~liv~nK~ 127 (176)
+.+.+.+|||+|++.++..|..++++++++|+|||++ +..+++....|+..+... .++.|+++|+||+
T Consensus 181 ~~v~l~iwDtaGQe~~r~~~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~~~~~~~i~~~~~~~~~piiLvgNK~ 260 (354)
T 2xtz_A 181 SGEVYRLFDVGGQRNERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKF 260 (354)
T ss_dssp ---EEEEEEECCSTTGGGGTGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBHHHHHHHHHHHHHTCGGGSSCEEEEEEECH
T ss_pred cceeeEEEECCCchhhhHHHHHHhCCCCEEEEEEECcccccccccccchhHHHHHHHHHHHHHhccccCCCeEEEEEECc
Confidence 5789999999999999999999999999999999998 677888888888877653 4689999999999
Q ss_pred CCCcccc-----------------------CHHHHHHHHH----------------cCCeEEEeccCCCCChHHHHHHHH
Q 030504 128 DVKNRQV-----------------------KAKQVTFHRK----------------KNLQYYEISAKSNYNFEKPFLYLA 168 (176)
Q Consensus 128 Dl~~~~~-----------------------~~~~~~~~~~----------------~~~~~~~~S~~~~~~v~~~~~~l~ 168 (176)
|+..+.. ..+..+++.. ..+.+++|||+++.||+++|.+++
T Consensus 261 DL~~~k~~~v~l~~~~~fp~y~~~~~~~~~~~~a~~~~~~~f~~l~~~~~~~~~~~~~~~~~eTSA~d~~nV~~vF~~v~ 340 (354)
T 2xtz_A 261 DIFEKKVLDVPLNVCEWFRDYQPVSSGKQEIEHAYEFVKKKFEELYYQNTAPDRVDRVFKIYRTTALDQKLVKKTFKLVD 340 (354)
T ss_dssp HHHHHHTTTSCGGGSGGGTTCCCCSSHHHHHHHHHHHHHHHHHHHHHHTCCTTTTTSCEEEEECCTTCHHHHHHHHHHHH
T ss_pred chhhhhcccccccccccccccccccCCCcCHHHHHHHHHHHHHHhhhccccccccCcceEEEEEEeecchhHHHHHHHHH
Confidence 9854211 1233344322 234579999999999999999999
Q ss_pred HHHhc
Q 030504 169 RKLAG 173 (176)
Q Consensus 169 ~~i~~ 173 (176)
+.+.+
T Consensus 341 ~~I~~ 345 (354)
T 2xtz_A 341 ETLRR 345 (354)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 88764
|
| >1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X | Back alignment and structure |
|---|
Probab=99.92 E-value=1.8e-24 Score=152.72 Aligned_cols=159 Identities=17% Similarity=0.148 Sum_probs=109.1
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCcc---------cccccccc
Q 030504 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE---------KFGGLRDG 81 (176)
Q Consensus 11 ~~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~---------~~~~~~~~ 81 (176)
.+..+|+++|++|+|||||+|++++..... ..+..+++..............+.+|||||+. .+......
T Consensus 6 ~r~~~VaIvG~~nvGKSTLln~L~g~~~~i-~s~~~~tTr~~~~gi~~~~~~~i~~iDTpG~~~~~~~~l~~~~~~~~~~ 84 (301)
T 1ega_A 6 SYCGFIAIVGRPNVGKSTLLNKLLGQKISI-TSRKAQTTRHRIVGIHTEGAYQAIYVDTPGLHMEEKRAINRLMNKAASS 84 (301)
T ss_dssp CEEEEEEEECSSSSSHHHHHHHHHTCSEEE-CCCCSSCCSSCEEEEEEETTEEEEEESSSSCCHHHHHHHHHHHTCCTTS
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHCCCccc-cCCCCCcceeeEEEEEEECCeeEEEEECcCCCccchhhHHHHHHHHHHH
Confidence 456689999999999999999988765421 11222223332222233345678999999987 33445567
Q ss_pred ccccccEEEEEEeCCChhhhhhHHHHHHHHhhhcCCCCEEEEEeCCCCCc-cc-cCHHHHHHHHHcCC-eEEEeccCCCC
Q 030504 82 YYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKN-RQ-VKAKQVTFHRKKNL-QYYEISAKSNY 158 (176)
Q Consensus 82 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~~-~~-~~~~~~~~~~~~~~-~~~~~S~~~~~ 158 (176)
++..+|++++|+|+++ +.....++..... ..+.|+++++||+|+.. .. .......+....++ .++++||+++.
T Consensus 85 ~l~~~D~vl~Vvd~~~---~~~~~~~i~~~l~-~~~~P~ilvlNK~D~~~~~~~~~~~l~~l~~~~~~~~~i~iSA~~g~ 160 (301)
T 1ega_A 85 SIGDVELVIFVVEGTR---WTPDDEMVLNKLR-EGKAPVILAVNKVDNVQEKADLLPHLQFLASQMNFLDIVPISAETGL 160 (301)
T ss_dssp CCCCEEEEEEEEETTC---CCHHHHHHHHHHH-SSSSCEEEEEESTTTCCCHHHHHHHHHHHHTTSCCSEEEECCTTTTT
T ss_pred HHhcCCEEEEEEeCCC---CCHHHHHHHHHHH-hcCCCEEEEEECcccCccHHHHHHHHHHHHHhcCcCceEEEECCCCC
Confidence 7889999999999976 3333333322222 13789999999999986 22 22223345555665 79999999999
Q ss_pred ChHHHHHHHHHHHhcC
Q 030504 159 NFEKPFLYLARKLAGS 174 (176)
Q Consensus 159 ~v~~~~~~l~~~i~~~ 174 (176)
|++++++++.+.+.+.
T Consensus 161 ~v~~l~~~i~~~l~~~ 176 (301)
T 1ega_A 161 NVDTIAAIVRKHLPEA 176 (301)
T ss_dssp THHHHHHHHHTTCCBC
T ss_pred CHHHHHHHHHHhCCcC
Confidence 9999999999876543
|
| >1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=1.9e-24 Score=161.25 Aligned_cols=157 Identities=19% Similarity=0.159 Sum_probs=108.9
Q ss_pred CCCCeeEEEEEcCCCCcHHHHHHHHhcCC-------CCCccccceeEEEeE--EEEEecCcEEEEEEEeCCCcccccccc
Q 030504 9 VDYPSFKLVIVGDGGTGKTTFVKRHLTGE-------FEKKYEPTIGVEVHP--LDFFTNCGKIRFYCWDTAGQEKFGGLR 79 (176)
Q Consensus 9 ~~~~~~~i~i~G~~~~GKttl~~~~~~~~-------~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~D~~g~~~~~~~~ 79 (176)
..++.++|+++|+.++|||||++++.... +..+.. .|.+... ..+.. ....+.+|||||++.+...+
T Consensus 15 ~~m~~~~I~iiG~~d~GKSTLi~~L~~~~~~~~~d~~~~e~~--~GiTi~~~~~~~~~--~~~~i~iiDtPGh~~~~~~~ 90 (482)
T 1wb1_A 15 MDFKNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQK--RGITIDIGFSAFKL--ENYRITLVDAPGHADLIRAV 90 (482)
T ss_dssp CCCEEEEEEEEECTTSSHHHHHHHHHTTC----------------------CCCEEEE--TTEEEEECCCSSHHHHHHHH
T ss_pred hcCCCCEEEEECCCCChHHHHHHHHHCCCccccccccccccc--CccEEecceEEEEE--CCEEEEEEECCChHHHHHHH
Confidence 44568999999999999999999987655 111111 2222222 22222 34689999999999988888
Q ss_pred ccccccccEEEEEEeCCChhhhhhHHHHHHHHhhhcCCCCEEEEEeCCCCCcccc----CHHHHHHHHHc----CCeEEE
Q 030504 80 DGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQV----KAKQVTFHRKK----NLQYYE 151 (176)
Q Consensus 80 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~~~~~----~~~~~~~~~~~----~~~~~~ 151 (176)
...+..+|++++|+|+++...-+.... +..+... +.|.++++||+|+.+... ..+..+++... ++++++
T Consensus 91 ~~~~~~aD~~ilVvda~~g~~~qt~e~-l~~~~~~--~ip~IvviNK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~ 167 (482)
T 1wb1_A 91 VSAADIIDLALIVVDAKEGPKTQTGEH-MLILDHF--NIPIIVVITKSDNAGTEEIKRTEMIMKSILQSTHNLKNSSIIP 167 (482)
T ss_dssp HHHTTSCCEEEEEEETTTCSCHHHHHH-HHHHHHT--TCCBCEEEECTTSSCHHHHHHHHHHHHHHHHHSSSGGGCCEEE
T ss_pred HHHHhhCCEEEEEEecCCCccHHHHHH-HHHHHHc--CCCEEEEEECCCcccchhHHHHHHHHHHHHhhhcccccceEEE
Confidence 888999999999999998432222222 2223332 788999999999976321 22333455544 578999
Q ss_pred eccCCCCChHHHHHHHHHHHh
Q 030504 152 ISAKSNYNFEKPFLYLARKLA 172 (176)
Q Consensus 152 ~S~~~~~~v~~~~~~l~~~i~ 172 (176)
+||++|+|+++++++|.+.+.
T Consensus 168 vSA~~g~gI~~L~~~L~~~i~ 188 (482)
T 1wb1_A 168 ISAKTGFGVDELKNLIITTLN 188 (482)
T ss_dssp CCTTTCTTHHHHHHHHHHHHH
T ss_pred EECcCCCCHHHHHHHHHHhhc
Confidence 999999999999999998764
|
| >3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP} | Back alignment and structure |
|---|
Probab=99.92 E-value=1.8e-25 Score=165.47 Aligned_cols=154 Identities=16% Similarity=0.168 Sum_probs=99.0
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHhcCCCC-CccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccc--------cccc
Q 030504 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFE-KKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGL--------RDGY 82 (176)
Q Consensus 12 ~~~~i~i~G~~~~GKttl~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~--------~~~~ 82 (176)
..++|+++|.+|+|||||+|+++..... ....++.+.+........ .+..+.+|||||+..+... ...+
T Consensus 223 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~--~g~~v~liDT~G~~~~~~~ve~~gi~~~~~~ 300 (462)
T 3geh_A 223 TGLKVAIVGRPNVGKSSLLNAWSQSDRAIVTDLPGTTRDVVESQLVV--GGIPVQVLDTAGIRETSDQVEKIGVERSRQA 300 (462)
T ss_dssp HCEEEEEEECTTSSHHHHHHHHHHHHBSCCSCCTTCCHHHHHHEEEE--TTEEEEECC--------------------CC
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCeeEEEEEEEEEE--CCEEEEEEECCccccchhHHHHHHHHHHhhh
Confidence 4578999999999999999998865432 111222222222223333 3456899999998665432 2336
Q ss_pred cccccEEEEEEeCCChhhhhhHHHHHHHHhhhcCCCCEEEEEeCCCCCccccCHHHHHHHHHcCCeEEEeccCCCCChHH
Q 030504 83 YIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEK 162 (176)
Q Consensus 83 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~ 162 (176)
+..+|++++|+|++++.+... ..++..+ ...|+++|+||+|+...........+. .+.+++++||++|.|+++
T Consensus 301 ~~~aD~vl~VvD~s~~~~~~~-~~i~~~l----~~~piivV~NK~Dl~~~~~~~~~~~~~--~~~~~i~iSAktg~Gi~e 373 (462)
T 3geh_A 301 ANTADLVLLTIDAATGWTTGD-QEIYEQV----KHRPLILVMNKIDLVEKQLITSLEYPE--NITQIVHTAAAQKQGIDS 373 (462)
T ss_dssp CCSCSEEEEEEETTTCSCHHH-HHHHHHH----TTSCEEEEEECTTSSCGGGSTTCCCCT--TCCCEEEEBTTTTBSHHH
T ss_pred hhcCCEEEEEeccCCCCCHHH-HHHHHhc----cCCcEEEEEECCCCCcchhhHHHHHhc--cCCcEEEEECCCCCCHHH
Confidence 788999999999998765443 2333333 357999999999997654332211111 457899999999999999
Q ss_pred HHHHHHHHHhcC
Q 030504 163 PFLYLARKLAGS 174 (176)
Q Consensus 163 ~~~~l~~~i~~~ 174 (176)
++++|.+.+...
T Consensus 374 L~~~i~~~~~~~ 385 (462)
T 3geh_A 374 LETAILEIVQTG 385 (462)
T ss_dssp HHHHHHHHHTTS
T ss_pred HHHHHHHHHhcc
Confidence 999999987654
|
| >3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.92 E-value=2.5e-24 Score=147.69 Aligned_cols=164 Identities=9% Similarity=0.008 Sum_probs=105.3
Q ss_pred CCCCeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCcc-----------cccc
Q 030504 9 VDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE-----------KFGG 77 (176)
Q Consensus 9 ~~~~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~-----------~~~~ 77 (176)
.....+||+++|.+|+|||||++++++........+..+.+...........+..+.+|||||.. .+..
T Consensus 25 ~~~~~~~i~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~liDTpG~~~~~~~~~~~~~~~~~ 104 (239)
T 3lxx_A 25 PRNSQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSWKETELVVVDTPGIFDTEVPNAETSKEIIR 104 (239)
T ss_dssp ---CEEEEEEECCTTSSHHHHHHHHHTSCCSCC-------CCSCEEEEEEETTEEEEEEECCSCC-----CHHHHHHHHH
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHcCCCcCccCCCCCceeeeEEEEEEEeCCceEEEEECCCccCCCCCHHHHHHHHHH
Confidence 44578999999999999999999988877755544433444444433333344578999999943 2333
Q ss_pred ccccccccccEEEEEEeCCChhhhhhHHHHHHHHhhh---cCCCCEEEEEeCCCCCccccC--------HHHHHHHHHcC
Q 030504 78 LRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV---CENIPIVLCGNKVDVKNRQVK--------AKQVTFHRKKN 146 (176)
Q Consensus 78 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~---~~~~p~liv~nK~Dl~~~~~~--------~~~~~~~~~~~ 146 (176)
....+++.+|++++|+|+++... ....++..+... ....|+++|+||+|+...... .....+.+.++
T Consensus 105 ~~~~~~~~~~~~l~v~d~~~~~~--~~~~~l~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~i~~~~~~l~~l~~~~~ 182 (239)
T 3lxx_A 105 CILLTSPGPHALLLVVPLGRYTE--EEHKATEKILKMFGERARSFMILIFTRKDDLGDTNLHDYLREAPEDIQDLMDIFG 182 (239)
T ss_dssp HHHHTTTCCSEEEEEEETTCCSS--HHHHHHHHHHHHHHHHHGGGEEEEEECGGGC------------CHHHHHHHHHHS
T ss_pred HHHhcCCCCcEEEEEeeCCCCCH--HHHHHHHHHHHHhhhhccceEEEEEeCCccCCcccHHHHHHhchHHHHHHHHHcC
Confidence 34445667899999999875432 112223333221 125699999999998653221 24567788888
Q ss_pred CeEEEeccCCC-----CChHHHHHHHHHHHhcC
Q 030504 147 LQYYEISAKSN-----YNFEKPFLYLARKLAGS 174 (176)
Q Consensus 147 ~~~~~~S~~~~-----~~v~~~~~~l~~~i~~~ 174 (176)
..++.++...+ .++.++|..+.+.+.++
T Consensus 183 ~~~~~~~~~~~~~~~~~~v~~ll~~i~~~~~~~ 215 (239)
T 3lxx_A 183 DRYCALNNKATGAEQEAQRAQLLGLIQRVVREN 215 (239)
T ss_dssp SSEEECCTTCCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CEEEEEECCCCccccHHHHHHHHHHHHHHHHHc
Confidence 88888877644 68999999988877553
|
| >3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=99.92 E-value=1.8e-24 Score=162.46 Aligned_cols=118 Identities=19% Similarity=0.197 Sum_probs=86.4
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHhc--CC---------------CCCcc---ccceeEEEeEEEEEecCcEEEEEEEeCCC
Q 030504 12 PSFKLVIVGDGGTGKTTFVKRHLT--GE---------------FEKKY---EPTIGVEVHPLDFFTNCGKIRFYCWDTAG 71 (176)
Q Consensus 12 ~~~~i~i~G~~~~GKttl~~~~~~--~~---------------~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~D~~g 71 (176)
...+|+|+|++++|||||+++++. +. ....+ ....|.+.......+....+.+.+|||||
T Consensus 12 ~~r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~liDTPG 91 (528)
T 3tr5_A 12 MRRTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVTTSVMQFPYKDYLINLLDTPG 91 (528)
T ss_dssp TEEEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCSSSSSEEEEEETTEEEEEECCCC
T ss_pred cCCEEEEECCCCCcHHHHHHHHHhhcCCcccceeeeccccccceecccchhhhcCCeeEEEeEEEEEeCCEEEEEEECCC
Confidence 467999999999999999999861 10 00000 00123333334444444567899999999
Q ss_pred ccccccccccccccccEEEEEEeCCChhhhhhHHHHHHHHhhhcCCCCEEEEEeCCCCCcc
Q 030504 72 QEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNR 132 (176)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~~~ 132 (176)
++.+...+..+++.+|++++|+|++++.+.+....| ..+... +.|+++|+||+|+...
T Consensus 92 ~~df~~~~~~~l~~aD~allVvDa~~g~~~~t~~~~-~~~~~~--~iPiivviNK~Dl~~~ 149 (528)
T 3tr5_A 92 HADFTEDTYRTLTAVDSALMVIDAAKGVEPRTIKLM-EVCRLR--HTPIMTFINKMDRDTR 149 (528)
T ss_dssp STTCCHHHHHGGGGCSEEEEEEETTTCSCHHHHHHH-HHHHTT--TCCEEEEEECTTSCCS
T ss_pred chhHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHH-HHHHHc--CCCEEEEEeCCCCccc
Confidence 999999999999999999999999987766665544 333333 8999999999999753
|
| >3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus} | Back alignment and structure |
|---|
Probab=99.91 E-value=1.1e-23 Score=155.61 Aligned_cols=155 Identities=17% Similarity=0.166 Sum_probs=106.4
Q ss_pred CCCCeeEEEEEcCCCCcHHHHHHHHhcC--CCCCc---------------------------cccceeEEEeEEEEEecC
Q 030504 9 VDYPSFKLVIVGDGGTGKTTFVKRHLTG--EFEKK---------------------------YEPTIGVEVHPLDFFTNC 59 (176)
Q Consensus 9 ~~~~~~~i~i~G~~~~GKttl~~~~~~~--~~~~~---------------------------~~~~~~~~~~~~~~~~~~ 59 (176)
...+.+||+++|++++|||||+++++.. ..... .....|++.......+..
T Consensus 13 ~~k~~~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~~~~~ 92 (439)
T 3j2k_7 13 PKKEHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFET 92 (439)
T ss_pred CCCceeEEEEEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEeEEEEec
Confidence 4567899999999999999999998532 11110 011134455554445555
Q ss_pred cEEEEEEEeCCCccccccccccccccccEEEEEEeCCChhh---hh---hHHHHHHHHhhhcCCCC-EEEEEeCCCCCcc
Q 030504 60 GKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLT---YK---NVPTWHRDLCRVCENIP-IVLCGNKVDVKNR 132 (176)
Q Consensus 60 ~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s---~~---~~~~~~~~~~~~~~~~p-~liv~nK~Dl~~~ 132 (176)
....+.+|||||+++|...+...+.++|++++|+|++++.. ++ .....+..+.. .+.| +++++||+|+...
T Consensus 93 ~~~~~~iiDTPGh~~f~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~~~--~~v~~iIvviNK~Dl~~~ 170 (439)
T 3j2k_7 93 EKKHFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKT--AGVKHLIVLINKMDDPTV 170 (439)
T ss_pred CCeEEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCCccccccCCCchHHHHHHHHHH--cCCCeEEEEeecCCCccc
Confidence 66789999999999999888888999999999999998642 21 11222222222 2666 9999999999642
Q ss_pred c--------cCHHHHHHHHHcC------CeEEEeccCCCCChHHHHH
Q 030504 133 Q--------VKAKQVTFHRKKN------LQYYEISAKSNYNFEKPFL 165 (176)
Q Consensus 133 ~--------~~~~~~~~~~~~~------~~~~~~S~~~~~~v~~~~~ 165 (176)
. ...+...+++..+ ++++++||++|.|+.++++
T Consensus 171 ~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~~i~iSA~~G~ni~~l~~ 217 (439)
T 3j2k_7 171 NWSNERYEECKEKLVPFLKKVGFNPKKDIHFMPCSGLTGANLKEQSD 217 (439)
T ss_pred chHHHHHHHHHHHHHHHHHHhcccccCCeeEEEeeccCCcccccccc
Confidence 1 1122334444444 5799999999999999654
|
| >1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=1.6e-24 Score=158.37 Aligned_cols=158 Identities=13% Similarity=0.064 Sum_probs=113.5
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHhcCC-------CCC-------ccccceeEEEeEEEEEecCcEEEEEEEeCCCcccccc
Q 030504 12 PSFKLVIVGDGGTGKTTFVKRHLTGE-------FEK-------KYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGG 77 (176)
Q Consensus 12 ~~~~i~i~G~~~~GKttl~~~~~~~~-------~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~ 77 (176)
+.+||+++|++++|||||++++.... +.. ......|.+.......++.....+.+|||||++.|..
T Consensus 2 ~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~~~iiDtpG~~~f~~ 81 (397)
T 1d2e_A 2 PHVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGHADYVK 81 (397)
T ss_dssp CEEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSSCEEEEEECSSHHHHHH
T ss_pred CeEEEEEEeCCCCCHHHHHHHHhChhhhcCccccchhhhhhcCHHHHhcCcEEEeeeEEeccCCeEEEEEECCChHHHHH
Confidence 57999999999999999999987531 110 0011234444444444555567889999999999888
Q ss_pred ccccccccccEEEEEEeCCChhhhhhHHHHHHHHhhhcCCCC-EEEEEeCCCCCccc-----cCHHHHHHHHHcC-----
Q 030504 78 LRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIP-IVLCGNKVDVKNRQ-----VKAKQVTFHRKKN----- 146 (176)
Q Consensus 78 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p-~liv~nK~Dl~~~~-----~~~~~~~~~~~~~----- 146 (176)
.....+..+|++++|+|+++....+....| ..+... +.| +++++||+|+.+.. ...+..++++..+
T Consensus 82 ~~~~~~~~aD~~ilVvda~~g~~~qt~e~l-~~~~~~--~vp~iivviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~~ 158 (397)
T 1d2e_A 82 NMITGTAPLDGCILVVAANDGPMPQTREHL-LLARQI--GVEHVVVYVNKADAVQDSEMVELVELEIRELLTEFGYKGEE 158 (397)
T ss_dssp HHHHTSSCCSEEEEEEETTTCSCHHHHHHH-HHHHHT--TCCCEEEEEECGGGCSCHHHHHHHHHHHHHHHHHTTSCTTT
T ss_pred HHHhhHhhCCEEEEEEECCCCCCHHHHHHH-HHHHHc--CCCeEEEEEECcccCCCHHHHHHHHHHHHHHHHHcCCCccc
Confidence 888888999999999999986544444443 333333 788 78999999997421 1223445666655
Q ss_pred CeEEEeccCCCCC----------hHHHHHHHHHHHh
Q 030504 147 LQYYEISAKSNYN----------FEKPFLYLARKLA 172 (176)
Q Consensus 147 ~~~~~~S~~~~~~----------v~~~~~~l~~~i~ 172 (176)
++++++||++|.| +.++++.+.+.+.
T Consensus 159 ~~~i~~SA~~g~n~~~~~~~~g~i~~Ll~~l~~~~p 194 (397)
T 1d2e_A 159 TPIIVGSALCALEQRDPELGLKSVQKLLDAVDTYIP 194 (397)
T ss_dssp SCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHHHSC
T ss_pred CcEEEeehhhcccccCCCccCCcHHHHHHHHHHhCC
Confidence 5899999999764 8899999988765
|
| >1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=2.3e-23 Score=152.97 Aligned_cols=163 Identities=15% Similarity=0.090 Sum_probs=110.3
Q ss_pred CCCCeeEEEEEcCCCCcHHHHHHHHhcC---CCCCcccc--ceeEEEeEEEEEe-------------c--C----cEEEE
Q 030504 9 VDYPSFKLVIVGDGGTGKTTFVKRHLTG---EFEKKYEP--TIGVEVHPLDFFT-------------N--C----GKIRF 64 (176)
Q Consensus 9 ~~~~~~~i~i~G~~~~GKttl~~~~~~~---~~~~~~~~--~~~~~~~~~~~~~-------------~--~----~~~~~ 64 (176)
...+.++|+++|+.++|||||++++.+. .+..+..+ |....+....... + + ....+
T Consensus 6 ~~~~~~~I~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i 85 (410)
T 1kk1_A 6 SRQAEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRV 85 (410)
T ss_dssp CCSEEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEE
T ss_pred cCCCccEEEEECCCCCCHHHHHHHHhCCccccChhhhcCCcEEEEeeeeeecccccccccccccccccccCcccccccEE
Confidence 3457899999999999999999997732 23333333 3333333322211 0 1 13789
Q ss_pred EEEeCCCccccccccccccccccEEEEEEeCCChh-hhhhHHHHHHHHhhhcCCCCEEEEEeCCCCCcccc----CHHHH
Q 030504 65 YCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARL-TYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQV----KAKQV 139 (176)
Q Consensus 65 ~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~~~~~----~~~~~ 139 (176)
.+|||||++.+.......+..+|++++|+|++++. ..+...++ ..+... ...|+++++||+|+.+... ..+..
T Consensus 86 ~iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l-~~~~~~-~~~~iivviNK~Dl~~~~~~~~~~~~i~ 163 (410)
T 1kk1_A 86 SFIDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHL-MALQII-GQKNIIIAQNKIELVDKEKALENYRQIK 163 (410)
T ss_dssp EEEECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHH-HHHHHH-TCCCEEEEEECGGGSCHHHHHHHHHHHH
T ss_pred EEEECCChHHHHHHHHhhhhhCCEEEEEEECCCCCCChhHHHHH-HHHHHc-CCCcEEEEEECccCCCHHHHHHHHHHHH
Confidence 99999999998877777788899999999999653 22222222 222222 2468999999999976432 12233
Q ss_pred HHHHH---cCCeEEEeccCCCCChHHHHHHHHHHHhc
Q 030504 140 TFHRK---KNLQYYEISAKSNYNFEKPFLYLARKLAG 173 (176)
Q Consensus 140 ~~~~~---~~~~~~~~S~~~~~~v~~~~~~l~~~i~~ 173 (176)
+++.. .+++++++||++|.|+++++++|.+.+..
T Consensus 164 ~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~~~~ 200 (410)
T 1kk1_A 164 EFIEGTVAENAPIIPISALHGANIDVLVKAIEDFIPT 200 (410)
T ss_dssp HHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHSCC
T ss_pred HHHHhcCcCCCeEEEeeCCCCCCHHHHHHHHHHhCCC
Confidence 44443 46799999999999999999999987653
|
| >3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=2.6e-24 Score=160.82 Aligned_cols=152 Identities=20% Similarity=0.189 Sum_probs=100.9
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHhcC--CCCCc---------------------------cccceeEEEeEEEEEecCcE
Q 030504 11 YPSFKLVIVGDGGTGKTTFVKRHLTG--EFEKK---------------------------YEPTIGVEVHPLDFFTNCGK 61 (176)
Q Consensus 11 ~~~~~i~i~G~~~~GKttl~~~~~~~--~~~~~---------------------------~~~~~~~~~~~~~~~~~~~~ 61 (176)
.+.+||+++|.+++|||||+++++.. .+... .....|++.......++...
T Consensus 31 k~~~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~ 110 (483)
T 3p26_A 31 LPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHR 110 (483)
T ss_dssp CCEEEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCCCCEEEEECSS
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEeeeEEEecCC
Confidence 35799999999999999999998754 11110 01112444444444555567
Q ss_pred EEEEEEeCCCccccccccccccccccEEEEEEeCCChhhhhh-----HHHHHHHHhhhcCCCCEEEEEeCCCCCccc--c
Q 030504 62 IRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKN-----VPTWHRDLCRVCENIPIVLCGNKVDVKNRQ--V 134 (176)
Q Consensus 62 ~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~-----~~~~~~~~~~~~~~~p~liv~nK~Dl~~~~--~ 134 (176)
..+.+|||||++++...+..++.++|++++|+|++++..+.. ...+...+.......|+++|+||+|+.+.. .
T Consensus 111 ~~~~iiDTPG~~~f~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~~~~~~iIvviNK~Dl~~~~~~~ 190 (483)
T 3p26_A 111 ANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLGIHNLIIAMNKMDNVDWSQQR 190 (483)
T ss_dssp CEEEEECCCCCGGGHHHHHHHHTTCSEEEEEEECCC------CCCCHHHHHHHHHHHHTTCCCEEEEEECGGGGTTCHHH
T ss_pred ceEEEEECCCcHHHHHHHHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHHHHHHcCCCcEEEEEECcCcccchHHH
Confidence 789999999999999999999999999999999998753321 112222222222345799999999997621 1
Q ss_pred ----CHHHHHHHHHc-----CCeEEEeccCCCCChHH
Q 030504 135 ----KAKQVTFHRKK-----NLQYYEISAKSNYNFEK 162 (176)
Q Consensus 135 ----~~~~~~~~~~~-----~~~~~~~S~~~~~~v~~ 162 (176)
..+...++... +++++++||++|.|+++
T Consensus 191 ~~~i~~~~~~~l~~~g~~~~~~~~i~iSA~~g~gi~e 227 (483)
T 3p26_A 191 FEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYK 227 (483)
T ss_dssp HHHHHHHHHHHHHHHTCCGGGEEEEECCSSSCTTSSS
T ss_pred HHHHHHHHHHHHHHcCCCcccceEEEEeeecCCCccc
Confidence 11222333333 46899999999999975
|
| >1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=1.2e-23 Score=151.30 Aligned_cols=114 Identities=14% Similarity=0.104 Sum_probs=85.9
Q ss_pred cEEEEEEEeCCCccccccccccccccccEEEEEEeCCC----------hhhhhhHHHHHHHHhhh--cCCCCEEEEEeCC
Q 030504 60 GKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTA----------RLTYKNVPTWHRDLCRV--CENIPIVLCGNKV 127 (176)
Q Consensus 60 ~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~----------~~s~~~~~~~~~~~~~~--~~~~p~liv~nK~ 127 (176)
..+.+.+|||+|++.++..|..++++++++|+|+|+++ ..++.....|+..+... ..+.|+++++||+
T Consensus 199 ~~~~l~i~Dt~Gq~~~r~~w~~~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es~~~~~~i~~~~~~~~~piILv~NK~ 278 (362)
T 1zcb_A 199 KNVPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVSIILFLNKT 278 (362)
T ss_dssp TTEEEEEEEECC-------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEEEEEECH
T ss_pred CCeEEEEEeccchhhhhhhHHHHhCCCCEEEEEEECccccccccccccccHHHHHHHHHHHHhcchhhCCCCEEEEEECh
Confidence 35789999999999999999999999999999999998 67888888888877653 4789999999999
Q ss_pred CCCcc------------------ccCHHHHHHH--------H---HcCCeEEEeccCCCCChHHHHHHHHHHHhc
Q 030504 128 DVKNR------------------QVKAKQVTFH--------R---KKNLQYYEISAKSNYNFEKPFLYLARKLAG 173 (176)
Q Consensus 128 Dl~~~------------------~~~~~~~~~~--------~---~~~~~~~~~S~~~~~~v~~~~~~l~~~i~~ 173 (176)
|+..+ ....+...++ + ..++.+++|||+++.|++++|.++.+.+.+
T Consensus 279 DL~~~ki~~~~l~~~fp~y~g~~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~~tSA~d~~nV~~vF~~v~~~i~~ 353 (362)
T 1zcb_A 279 DLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFLVECFRGKRRDQQQRPLYHHFTTAINTENIRLVFRDVKDTILH 353 (362)
T ss_dssp HHHHHHTTTCCGGGTCTTCCSCTTCHHHHHHHHHHHHHTTCSSCC--CCEEEECCTTCHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhccccchhhcCccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEecCCchhHHHHHHHHHHHHHH
Confidence 98632 1222333443 1 346789999999999999999999988764
|
| >4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica} | Back alignment and structure |
|---|
Probab=99.91 E-value=2.2e-24 Score=153.17 Aligned_cols=115 Identities=13% Similarity=0.189 Sum_probs=91.2
Q ss_pred CcEEEEEEEeCCCccccccccccccccccEEEEEEeCC----------ChhhhhhHHHHHHHHhhh--cCCCCEEEEEeC
Q 030504 59 CGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVT----------ARLTYKNVPTWHRDLCRV--CENIPIVLCGNK 126 (176)
Q Consensus 59 ~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~----------~~~s~~~~~~~~~~~~~~--~~~~p~liv~nK 126 (176)
.+.+.+++|||+|+++++..|..++++++++|+|||++ +..++.+...|+..+... ..+.|+++++||
T Consensus 158 ~~~v~l~iwDtaGQe~~R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~~~i~~~~~~~~~piiLv~NK 237 (340)
T 4fid_A 158 VKDIPFHLIDVGGQRSERKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFKDIMTNEFLKGAVKLIFLNK 237 (340)
T ss_dssp SSSCEEEEEECCSCHHHHHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHHHHHHHCGGGTTSEEEEEEEC
T ss_pred eeeeeeccccCCCcccccccHHHHhccCCEEEEEEECCccccccccccccchHHHHHHHHHHHhhhhccCCCeEEEEEEC
Confidence 35678999999999999999999999999999999998 567777777777776543 368999999999
Q ss_pred CCCCcccc-----------------CHHHHHHHHH---------------------------cCCeEEEeccCCCCChHH
Q 030504 127 VDVKNRQV-----------------KAKQVTFHRK---------------------------KNLQYYEISAKSNYNFEK 162 (176)
Q Consensus 127 ~Dl~~~~~-----------------~~~~~~~~~~---------------------------~~~~~~~~S~~~~~~v~~ 162 (176)
+|+..+.. ..++..++.. ..+.+++|||++..|++.
T Consensus 238 ~DL~~eki~~~~l~~~fp~y~g~~~~e~a~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~iy~h~TsA~dt~nv~~ 317 (340)
T 4fid_A 238 MDLFEEKLTKVPLNTIFPEYTGGDNAVMGAQYIQQLFTGKLQTEEMNISGADGTANIEGAVNEKVYTNPTNATDGSNIKR 317 (340)
T ss_dssp HHHHHHHHHHSCGGGTCTTCCCTTCHHHHHHHHHHHHHTTSEEEESCC--------------CEEEEEEECTTCHHHHHH
T ss_pred chhhhhhcCcchHHHhhhhhcCCCCHHHHHHHHHHhcccccchhhhhccccccccccccccCcceEEEEEEeeCcHHHHH
Confidence 99864211 1222222211 247889999999999999
Q ss_pred HHHHHHHHHhc
Q 030504 163 PFLYLARKLAG 173 (176)
Q Consensus 163 ~~~~l~~~i~~ 173 (176)
+|..+.+.|.+
T Consensus 318 vF~~v~~~Il~ 328 (340)
T 4fid_A 318 VFMLAVDVIMK 328 (340)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999988764
|
| >4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=1.7e-24 Score=160.89 Aligned_cols=156 Identities=19% Similarity=0.160 Sum_probs=103.6
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCC--------ccccccccccc
Q 030504 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAG--------QEKFGGLRDGY 82 (176)
Q Consensus 11 ~~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g--------~~~~~~~~~~~ 82 (176)
+...+|+++|.+|||||||+|++.+.+.. ....+.|++..............+.+||||| ++.+......+
T Consensus 21 m~~~~V~lvG~~nvGKSTL~n~l~~~~~~-~v~~~~g~t~~~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~ 99 (456)
T 4dcu_A 21 MGKPVVAIVGRPNVGKSTIFNRIAGERIS-IVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIA 99 (456)
T ss_dssp --CCEEEEECSSSSSHHHHHHHHEEEEEC------------CEEEECTTCSSCCEEECCCC------CCHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhCCCCc-ccCCCCCcceeEEEEEEEECCceEEEEECCCCCCcchHHHHHHHHHHHhh
Confidence 45679999999999999999998876653 3355678888888777777777899999999 56666677788
Q ss_pred cccccEEEEEEeCCChhhhhhHHHHHHHHhhhcCCCCEEEEEeCCCCCccccCHHHHHHHHHcCC-eEEEeccCCCCChH
Q 030504 83 YIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNL-QYYEISAKSNYNFE 161 (176)
Q Consensus 83 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~S~~~~~~v~ 161 (176)
+..+|++++|+|..++.+ ....++...... .++|+++|+||+|+..... ...++. ..++ ..+++||++|.|+.
T Consensus 100 ~~~ad~il~VvD~~~~~~--~~d~~l~~~l~~-~~~pvilV~NK~D~~~~~~--~~~e~~-~lg~~~~~~iSA~~g~gv~ 173 (456)
T 4dcu_A 100 MDEADVIIFMVNGREGVT--AADEEVAKILYR-TKKPVVLAVNKLDNTEMRA--NIYDFY-SLGFGEPYPISGTHGLGLG 173 (456)
T ss_dssp HHHCSEEEEEEESSSCSC--HHHHHHHHHHTT-CCSCEEEEEECC-----------CCSG-GGSSSSEEECCTTTCTTHH
T ss_pred HhhCCEEEEEEeCCCCCC--hHHHHHHHHHHH-cCCCEEEEEECccchhhhh--hHHHHH-HcCCCceEEeecccccchH
Confidence 899999999999876432 223333333222 4899999999999864321 111222 2232 56799999999999
Q ss_pred HHHHHHHHHHhc
Q 030504 162 KPFLYLARKLAG 173 (176)
Q Consensus 162 ~~~~~l~~~i~~ 173 (176)
++++++.+.+.+
T Consensus 174 ~L~~~i~~~l~~ 185 (456)
T 4dcu_A 174 DLLDAVAEHFKN 185 (456)
T ss_dssp HHHHHHHTTGGG
T ss_pred HHHHHHHhhccc
Confidence 999999887653
|
| >2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ... | Back alignment and structure |
|---|
Probab=99.90 E-value=2.2e-24 Score=158.16 Aligned_cols=160 Identities=16% Similarity=0.102 Sum_probs=114.9
Q ss_pred CCCeeEEEEEcCCCCcHHHHHHHHhcC--------CCCCc-------cccceeEEEeEEEEEecCcEEEEEEEeCCCccc
Q 030504 10 DYPSFKLVIVGDGGTGKTTFVKRHLTG--------EFEKK-------YEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK 74 (176)
Q Consensus 10 ~~~~~~i~i~G~~~~GKttl~~~~~~~--------~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~ 74 (176)
..+.+||+++|++++|||||+++++.. .+... .....|.+.......++.....+.+|||||++.
T Consensus 8 ~~~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~~~iiDtpG~~~ 87 (405)
T 2c78_A 8 TKPHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHAD 87 (405)
T ss_dssp -CCEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSSCEEEEEECCCSGG
T ss_pred CCCeEEEEEEcCCCCCHHHHHHHHHhhhhhcCccccccchhhccCCHHHHHcCCCEEeeeeEeccCCeEEEEEECCChHH
Confidence 457899999999999999999998762 11110 011344455544455555667889999999999
Q ss_pred cccccccccccccEEEEEEeCCChhhhhhHHHHHHHHhhhcCCCC-EEEEEeCCCCCcc-c----cCHHHHHHHHHcC--
Q 030504 75 FGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIP-IVLCGNKVDVKNR-Q----VKAKQVTFHRKKN-- 146 (176)
Q Consensus 75 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p-~liv~nK~Dl~~~-~----~~~~~~~~~~~~~-- 146 (176)
|.......+..+|++++|+|++++...+. ..++..+... +.| +++++||+|+... . ...+..+++...+
T Consensus 88 f~~~~~~~~~~aD~~ilVvda~~g~~~qt-~~~l~~~~~~--~ip~iivviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~ 164 (405)
T 2c78_A 88 YIKNMITGAAQMDGAILVVSAADGPMPQT-REHILLARQV--GVPYIVVFMNKVDMVDDPELLDLVEMEVRDLLNQYEFP 164 (405)
T ss_dssp GHHHHHHHHTTCSSEEEEEETTTCCCHHH-HHHHHHHHHT--TCCCEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHCCEEEEEEECCCCCcHHH-HHHHHHHHHc--CCCEEEEEEECccccCcHHHHHHHHHHHHHHHHHhccc
Confidence 98888888899999999999998754333 3444444443 778 8899999999742 1 1123445566555
Q ss_pred ---CeEEEeccCCCCC------------------hHHHHHHHHHHHh
Q 030504 147 ---LQYYEISAKSNYN------------------FEKPFLYLARKLA 172 (176)
Q Consensus 147 ---~~~~~~S~~~~~~------------------v~~~~~~l~~~i~ 172 (176)
++++++||++|.| +.++++.+...+.
T Consensus 165 ~~~~~~i~~SA~~g~~v~~~~~~~~~~~~~~~~~i~~Ll~~l~~~lp 211 (405)
T 2c78_A 165 GDEVPVIRGSALLALEQMHRNPKTRRGENEWVDKIWELLDAIDEYIP 211 (405)
T ss_dssp TTTSCEEECCHHHHHHHHHHCTTCCTTSCHHHHHHHHHHHHHHHHSC
T ss_pred ccCCCEEEccHHHhhhhhccccccccCCCcccccHHHHHHHHHhhcC
Confidence 6899999999987 7788888877654
|
| >3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=4.1e-24 Score=149.32 Aligned_cols=157 Identities=17% Similarity=0.230 Sum_probs=91.4
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHhcCC-CCCcc-------ccceeEEEeEEEEEecCcEEEEEEEeCCCcccc-------c
Q 030504 12 PSFKLVIVGDGGTGKTTFVKRHLTGE-FEKKY-------EPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKF-------G 76 (176)
Q Consensus 12 ~~~~i~i~G~~~~GKttl~~~~~~~~-~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~-------~ 76 (176)
..++|+++|.+|+|||||+|+++... +...+ .++.+.+........++..+.+.+|||||.... .
T Consensus 7 ~~~~I~vvG~~g~GKSTLin~L~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~liDTpG~~d~~~~~~~~~ 86 (274)
T 3t5d_A 7 FEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCWQ 86 (274)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHSSSCC---------------CCCEEEEEEECC--CCEEEEEEECCCCSCCSCCTTTTH
T ss_pred cEEEEEEECCCCCCHHHHHHHHhCCCccccCCCCcccccCCceEEEEEEEEEecCCeEEEEEEEECCCccccccchhhHH
Confidence 57999999999999999999966443 33333 455555555555544555679999999997322 1
Q ss_pred ccc-------cccc-------------ccccEEEEEEeCCChhhhhhHHHHHHHHhhhcCCCCEEEEEeCCCCCccccC-
Q 030504 77 GLR-------DGYY-------------IHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVK- 135 (176)
Q Consensus 77 ~~~-------~~~~-------------~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~~~~~~- 135 (176)
... ..++ .++|+++++++.+...-...-..++..+.. +.|+++|+||+|+......
T Consensus 87 ~i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~~~~~~~d~~~l~~l~~---~~pvi~V~nK~D~~~~~e~~ 163 (274)
T 3t5d_A 87 PVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLHE---KVNIIPLIAKADTLTPEECQ 163 (274)
T ss_dssp HHHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCCSSCCHHHHHHHHHHTT---TSCEEEEESSGGGSCHHHHH
T ss_pred HHHHHHHHHHHHHHHhhcccccccccCCceeEEEEEecCCCCCCCHHHHHHHHHHhc---cCCEEEEEeccCCCCHHHHH
Confidence 111 1122 236799999987653211222234444433 8999999999998653322
Q ss_pred ---HHHHHHHHHcCCeEEEeccCCCCChHHHHHHHHHHH
Q 030504 136 ---AKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171 (176)
Q Consensus 136 ---~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l~~~i 171 (176)
....+.+...++.++++|+++++|+++++++|.+.+
T Consensus 164 ~~~~~i~~~l~~~~i~v~~~sa~~~~~~~~l~~~l~~~~ 202 (274)
T 3t5d_A 164 QFKKQIMKEIQEHKIKIYEFPETDDEEENKLVKKIKDRL 202 (274)
T ss_dssp HHHHHHHHHHHHTTCCCCCC-----------CHHHHHTC
T ss_pred HHHHHHHHHHHHcCCeEEcCCCCCChhHHHHHHHHhcCC
Confidence 223455667789999999999999999999998754
|
| >1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=1.4e-24 Score=160.33 Aligned_cols=153 Identities=19% Similarity=0.215 Sum_probs=102.7
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHhcC--CCCCcc---------------------------ccceeEEEeEEEEEecCcE
Q 030504 11 YPSFKLVIVGDGGTGKTTFVKRHLTG--EFEKKY---------------------------EPTIGVEVHPLDFFTNCGK 61 (176)
Q Consensus 11 ~~~~~i~i~G~~~~GKttl~~~~~~~--~~~~~~---------------------------~~~~~~~~~~~~~~~~~~~ 61 (176)
.+.+||+++|++++|||||+++++.. .+.... ....|.+.......++...
T Consensus 4 k~~~~I~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~~~~~~~~~ 83 (435)
T 1jny_A 4 KPHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFETKK 83 (435)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEECSS
T ss_pred CCEEEEEEEeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEeeEEEEecCC
Confidence 46799999999999999999998753 332110 0012334443333445566
Q ss_pred EEEEEEeCCCccccccccccccccccEEEEEEeCCChhhhhhHHHHHHHHh------hhcCCCCEEEEEeCCCCCccc--
Q 030504 62 IRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLC------RVCENIPIVLCGNKVDVKNRQ-- 133 (176)
Q Consensus 62 ~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~------~~~~~~p~liv~nK~Dl~~~~-- 133 (176)
..+.+|||||++++...+..++..+|++++|+|+++ .+|+....|..+.. ....-.|+++++||+|+.+..
T Consensus 84 ~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvDa~~-gsfe~~~~~~~qt~~~~~~~~~~~~~~iivviNK~Dl~~~~~~ 162 (435)
T 1jny_A 84 YFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKK-GEYEAGMSVEGQTREHIILAKTMGLDQLIVAVNKMDLTEPPYD 162 (435)
T ss_dssp CEEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECST-THHHHHHSTTCHHHHHHHHHHHTTCTTCEEEEECGGGSSSTTC
T ss_pred eEEEEEECCCcHHHHHHHHhhhhhcCEEEEEEECCC-CccccccccchHHHHHHHHHHHcCCCeEEEEEEcccCCCcccc
Confidence 789999999999998888889999999999999998 55554332211111 111234699999999997621
Q ss_pred ------cCHHHHHHHHHcC-----CeEEEeccCCCCChHHHH
Q 030504 134 ------VKAKQVTFHRKKN-----LQYYEISAKSNYNFEKPF 164 (176)
Q Consensus 134 ------~~~~~~~~~~~~~-----~~~~~~S~~~~~~v~~~~ 164 (176)
...+..+++...+ ++++++||++|+|+.+++
T Consensus 163 ~~~~~~~~~~i~~~~~~~~~~~~~~~~i~iSA~~g~~v~e~~ 204 (435)
T 1jny_A 163 EKRYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNITHKS 204 (435)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTTBCC
T ss_pred HHHHHHHHHHHHHHHHHcCCCcCCceEEEeecccCccccccc
Confidence 1233446666655 689999999999997554
|
| >2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.90 E-value=4.6e-24 Score=141.73 Aligned_cols=117 Identities=18% Similarity=0.189 Sum_probs=89.1
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHhcCCCCCc---cccceeEEEeEEEEEecCcEEEEEEEeCCCcccccccccccccc--
Q 030504 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKK---YEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIH-- 85 (176)
Q Consensus 11 ~~~~~i~i~G~~~~GKttl~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~-- 85 (176)
...++|+++|++|||||||++++..+.+... +.++.+. +...+.+.+|||||++.+...+..++..
T Consensus 46 ~~~~~i~vvG~~g~GKSsll~~l~~~~~~~~~~~~~~~~~~---------~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~ 116 (193)
T 2ged_A 46 SYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAA---------DYDGSGVTLVDFPGHVKLRYKLSDYLKTRA 116 (193)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHSSCC---------------------CCCCTTCSEEEETTCCBSSCCHHHHHHHHG
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCCcccccCCCceee---------eecCCeEEEEECCCCchHHHHHHHHHHhhc
Confidence 5678999999999999999999988775431 2222211 1144578899999999988888887776
Q ss_pred --ccEEEEEEeCC-ChhhhhhHHHHHHHHhhh-----cCCCCEEEEEeCCCCCccccCH
Q 030504 86 --GQCAIIMFDVT-ARLTYKNVPTWHRDLCRV-----CENIPIVLCGNKVDVKNRQVKA 136 (176)
Q Consensus 86 --~~~~i~v~d~~-~~~s~~~~~~~~~~~~~~-----~~~~p~liv~nK~Dl~~~~~~~ 136 (176)
+|++++|+|++ +..++..+..|+..+... .++.|+++|+||+|+.......
T Consensus 117 ~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~ 175 (193)
T 2ged_A 117 KFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARPPS 175 (193)
T ss_dssp GGEEEEEEEEETTCCHHHHHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCCHH
T ss_pred ccCCEEEEEEECCCCchhHHHHHHHHHHHHhhhhhccccCCCEEEEEEchHhcCCCCHH
Confidence 89999999999 888998888887766543 2589999999999998654433
|
| >1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=2.6e-23 Score=157.93 Aligned_cols=156 Identities=21% Similarity=0.197 Sum_probs=105.6
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHhcCCCCCc----cccceeEEEeEEEE------------EecCcEEEEEEEeCCCccc
Q 030504 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKK----YEPTIGVEVHPLDF------------FTNCGKIRFYCWDTAGQEK 74 (176)
Q Consensus 11 ~~~~~i~i~G~~~~GKttl~~~~~~~~~~~~----~~~~~~~~~~~~~~------------~~~~~~~~~~~~D~~g~~~ 74 (176)
++..+|+++|++++|||||+++++....... ..++.|........ ..+.....+.+|||||++.
T Consensus 3 ~r~~~V~IvGh~d~GKTTLl~~L~~~~v~~~e~ggiT~~ig~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~liDTPGhe~ 82 (594)
T 1g7s_A 3 IRSPIVSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEA 82 (594)
T ss_dssp ECCCEEEEECSTTSSHHHHHHHHHHHHHSCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSC
T ss_pred CCCcEEEEECCCCCcHHHHHHHHhcccCccccCCceecccCeEEEeechhhhhccccccccccccccCCEEEEECCCcHH
Confidence 3567999999999999999999876543221 12233322221110 0001122589999999999
Q ss_pred cccccccccccccEEEEEEeCCC---hhhhhhHHHHHHHHhhhcCCCCEEEEEeCCCCCccccC--------------H-
Q 030504 75 FGGLRDGYYIHGQCAIIMFDVTA---RLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVK--------------A- 136 (176)
Q Consensus 75 ~~~~~~~~~~~~~~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~~~~~~--------------~- 136 (176)
|...+...+..+|++++|+|+++ +.+++.+. .+.. .+.|+++++||+|+...... .
T Consensus 83 F~~~~~r~~~~aD~aILVvDa~~Gv~~qT~e~l~----~l~~--~~vPiIVViNKiDl~~~~~~~~~~~~~e~sa~~~~~ 156 (594)
T 1g7s_A 83 FTTLRKRGGALADLAILIVDINEGFKPQTQEALN----ILRM--YRTPFVVAANKIDRIHGWRVHEGRPFMETFSKQDIQ 156 (594)
T ss_dssp CTTSBCSSSBSCSEEEEEEETTTCCCHHHHHHHH----HHHH--TTCCEEEEEECGGGSTTCCCCTTCCHHHHHTTSCHH
T ss_pred HHHHHHHHHhhCCEEEEEEECCCCccHhHHHHHH----HHHH--cCCeEEEEecccccccccccccCCchHHHHHHhHHH
Confidence 99999999999999999999998 44443332 2223 38999999999999642110 0
Q ss_pred ----------HHHHHHHHc---------------CCeEEEeccCCCCChHHHHHHHHHHHh
Q 030504 137 ----------KQVTFHRKK---------------NLQYYEISAKSNYNFEKPFLYLARKLA 172 (176)
Q Consensus 137 ----------~~~~~~~~~---------------~~~~~~~S~~~~~~v~~~~~~l~~~i~ 172 (176)
+........ .++++++||++|.|++++++++...+.
T Consensus 157 v~~~~~e~i~ei~~~L~e~gl~~e~~~~l~~~~~~vpvv~vSA~tG~GI~eLl~~I~~~~~ 217 (594)
T 1g7s_A 157 VQQKLDTKVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPELLTMLMGLAQ 217 (594)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcCcchHHHHHHHhccCcceEEEEeccCCCCchhHHHHHHhhcc
Confidence 011111222 237999999999999999999987654
|
| >1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.90 E-value=8.3e-25 Score=162.66 Aligned_cols=155 Identities=14% Similarity=0.173 Sum_probs=108.5
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccccccccccEEE
Q 030504 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (176)
Q Consensus 11 ~~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 90 (176)
++..+|+++|++++|||||++++..+.+.....+ |++.......+......+.+|||||++.|...+...+..+|+++
T Consensus 2 ~R~~~V~IvGhvd~GKTTLl~~L~~~~v~~~e~~--GIT~~i~~~~v~~~~~~i~~iDTPGhe~f~~~~~~~~~~aD~aI 79 (501)
T 1zo1_I 2 PRAPVVTIMGHVDHGKTSLLEYIRSTKVASGEAG--GITQHIGAYHVETENGMITFLDTPGHAAFTSMRARGAQATDIVV 79 (501)
T ss_dssp CCCCCEEEEESTTSSSHHHHHHHHHHHHSBTTBC--CCCCCSSCCCCCTTSSCCCEECCCTTTCCTTSBCSSSBSCSSEE
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHcCCCccccCC--CeeEeEEEEEEEECCEEEEEEECCCcHHHHHHHHHHHhhCCEEE
Confidence 3568999999999999999999887654432222 22222222222223446889999999999999999999999999
Q ss_pred EEEeCCChhhhhhHHHHHHHHhhhcCCCCEEEEEeCCCCCccccC---HHHH---HHHHHc--CCeEEEeccCCCCChHH
Q 030504 91 IMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVK---AKQV---TFHRKK--NLQYYEISAKSNYNFEK 162 (176)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~~~~~~---~~~~---~~~~~~--~~~~~~~S~~~~~~v~~ 162 (176)
+|+|++++...+....+ ..+.. .+.|+++++||+|+...... .+.. .+.... .++++++||++|.|+++
T Consensus 80 LVVda~~g~~~qT~e~l-~~~~~--~~vPiIVviNKiDl~~~~~~~v~~~l~~~~~~~~~~~~~~~~v~vSAktG~gI~e 156 (501)
T 1zo1_I 80 LVVAADDGVMPQTIEAI-QHAKA--AQVPVVVAVNKIDKPEADPDRVKNELSQYGILPEEWGGESQFVHVSAKAGTGIDE 156 (501)
T ss_dssp EEEETTTBSCTTTHHHH-HHHHH--TTCCEEEEEECSSSSTTCCCCTTCCCCCCCCCTTCCSSSCEEEECCTTTCTTCTT
T ss_pred EEeecccCccHHHHHHH-HHHHh--cCceEEEEEEeccccccCHHHHHHHHHHhhhhHHHhCCCccEEEEeeeeccCcch
Confidence 99999986544444333 22222 38899999999999753211 1110 111222 26899999999999999
Q ss_pred HHHHHHHH
Q 030504 163 PFLYLARK 170 (176)
Q Consensus 163 ~~~~l~~~ 170 (176)
+|+++...
T Consensus 157 Lle~I~~~ 164 (501)
T 1zo1_I 157 LLDAILLQ 164 (501)
T ss_dssp HHHHTTTT
T ss_pred hhhhhhhh
Confidence 99998754
|
| >1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1 | Back alignment and structure |
|---|
Probab=99.90 E-value=2.3e-23 Score=154.18 Aligned_cols=157 Identities=20% Similarity=0.216 Sum_probs=100.7
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeE--EEEEecCcEEEEEEEeCCCcccccccc---------
Q 030504 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHP--LDFFTNCGKIRFYCWDTAGQEKFGGLR--------- 79 (176)
Q Consensus 11 ~~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~D~~g~~~~~~~~--------- 79 (176)
...+||+++|++|||||||+|++++.... ...+..|++... ..+..++. .+.+|||+|..+.....
T Consensus 178 ~~~~kvaivG~~gvGKSTLln~l~g~~~~-~v~~~~gtT~d~~~~~i~~~g~--~~~l~Dt~G~~~~~~~~~~~~e~~~~ 254 (439)
T 1mky_A 178 TDAIKVAIVGRPNVGKSTLFNAILNKERA-LVSPIPGTTRDPVDDEVFIDGR--KYVFVDTAGLRRKSRVEPRTVEKYSN 254 (439)
T ss_dssp CSCEEEEEECSTTSSHHHHHHHHHTSTTE-EECCCC------CCEEEEETTE--EEEESSCSCC-----------CCSCC
T ss_pred ccCceEEEECCCCCCHHHHHHHHhCCccc-ccCCCCCCcCCceEEEEEECCE--EEEEEECCCCccccccchhhHHHHHH
Confidence 35689999999999999999997765431 122333333332 33444443 57899999975432211
Q ss_pred ---ccccccccEEEEEEeCCChhhhhhHHHHHHHHhhhcCCCCEEEEEeCCCCCcccc-CH-HHH-HHHH----HcCCeE
Q 030504 80 ---DGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQV-KA-KQV-TFHR----KKNLQY 149 (176)
Q Consensus 80 ---~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~~~~~-~~-~~~-~~~~----~~~~~~ 149 (176)
..+++.+|++++|+|++++.+.+.. .+...+.. .++|+++++||+|+..... .. +.. .+.+ ..++++
T Consensus 255 ~~~~~~i~~ad~vllv~d~~~~~~~~~~-~i~~~l~~--~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (439)
T 1mky_A 255 YRVVDSIEKADVVVIVLDATQGITRQDQ-RMAGLMER--RGRASVVVFNKWDLVVHREKRYDEFTKLFREKLYFIDYSPL 331 (439)
T ss_dssp HHHHHHHHHCSEEEEEEETTTCCCHHHH-HHHHHHHH--TTCEEEEEEECGGGSTTGGGCHHHHHHHHHHHCGGGTTSCE
T ss_pred HHHHHHHhhCCEEEEEEeCCCCCCHHHH-HHHHHHHH--cCCCEEEEEECccCCCchhhHHHHHHHHHHHHhccCCCCcE
Confidence 2346678999999999886655432 22233333 3899999999999875332 11 111 2222 235789
Q ss_pred EEeccCCCCChHHHHHHHHHHHhc
Q 030504 150 YEISAKSNYNFEKPFLYLARKLAG 173 (176)
Q Consensus 150 ~~~S~~~~~~v~~~~~~l~~~i~~ 173 (176)
+++||++|.|++++|+.+.+.+.+
T Consensus 332 ~~~SA~~g~gv~~l~~~i~~~~~~ 355 (439)
T 1mky_A 332 IFTSADKGWNIDRMIDAMNLAYAS 355 (439)
T ss_dssp EECBTTTTBSHHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHHh
Confidence 999999999999999999887643
|
| >1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 | Back alignment and structure |
|---|
Probab=99.90 E-value=1e-23 Score=155.80 Aligned_cols=151 Identities=19% Similarity=0.197 Sum_probs=103.3
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHhcCCC--CCc----------cccc-------------------eeEEEeEEEEEecC
Q 030504 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEF--EKK----------YEPT-------------------IGVEVHPLDFFTNC 59 (176)
Q Consensus 11 ~~~~~i~i~G~~~~GKttl~~~~~~~~~--~~~----------~~~~-------------------~~~~~~~~~~~~~~ 59 (176)
.+.+||+++|++++|||||+++++.+.. ... ...+ .|++.......+..
T Consensus 22 ~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~i~~~s~~~gt~~~~~~~~~~~d~~~~E~~rGiTi~~~~~~~~~ 101 (434)
T 1zun_B 22 KEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFST 101 (434)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEEC
T ss_pred CCceEEEEEECCCCCHHHHHHHHHhhcCCCchhhhhhhhhhhhccCccccchhhhhhhccChhHHHCCcEEEeeeeEeec
Confidence 4569999999999999999999875431 100 0011 12333323333444
Q ss_pred cEEEEEEEeCCCccccccccccccccccEEEEEEeCCChhhhhhHHHHHHHHhhhcCCCCEEEEEeCCCCCccc------
Q 030504 60 GKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQ------ 133 (176)
Q Consensus 60 ~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~~~~------ 133 (176)
....+.+|||||++.|...+..++..+|++++|+|++++...+.. .++..+... ...|+++|+||+|+.+..
T Consensus 102 ~~~~~~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~~qt~-~~l~~~~~~-~~~~iIvviNK~Dl~~~~~~~~~~ 179 (434)
T 1zun_B 102 AKRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQTQTR-RHSYIASLL-GIKHIVVAINKMDLNGFDERVFES 179 (434)
T ss_dssp SSEEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSCHHHH-HHHHHHHHT-TCCEEEEEEECTTTTTSCHHHHHH
T ss_pred CCceEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCCcHHHH-HHHHHHHHc-CCCeEEEEEEcCcCCcccHHHHHH
Confidence 567899999999999988888889999999999999986533332 333333332 223699999999997521
Q ss_pred cCHHHHHHHHHcC-----CeEEEeccCCCCChHHH
Q 030504 134 VKAKQVTFHRKKN-----LQYYEISAKSNYNFEKP 163 (176)
Q Consensus 134 ~~~~~~~~~~~~~-----~~~~~~S~~~~~~v~~~ 163 (176)
...+...+++..+ ++++++||++|.|++++
T Consensus 180 i~~~~~~~~~~~g~~~~~~~~i~vSA~~g~gi~~~ 214 (434)
T 1zun_B 180 IKADYLKFAEGIAFKPTTMAFVPMSALKGDNVVNK 214 (434)
T ss_dssp HHHHHHHHHHTTTCCCSEEEEEECCTTTCTTTSSC
T ss_pred HHHHHHHHHHHhCCCccCceEEEEeccCCCCcccc
Confidence 1223445666666 78999999999999874
|
| >2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.90 E-value=3.5e-23 Score=149.67 Aligned_cols=143 Identities=8% Similarity=-0.013 Sum_probs=104.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccccccccccEEEEEEe
Q 030504 15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFD 94 (176)
Q Consensus 15 ~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d 94 (176)
+|+++|++++|||||+++++ ..|.+.......+......+.+|||||+++|.......+..+|++++|+|
T Consensus 23 ~i~iiG~~d~GKSTL~~~L~----------~~giTi~~~~~~~~~~~~~i~iiDtPGh~~f~~~~~~~~~~aD~ailVvd 92 (370)
T 2elf_A 23 NVAIIGTEKSGRTSLAANLG----------KKGTSSDITMYNNDKEGRNMVFVDAHSYPKTLKSLITALNISDIAVLCIP 92 (370)
T ss_dssp EEEEEESTTSSHHHHHHTTS----------EEEEESSSEEEEECSSSSEEEEEECTTTTTCHHHHHHHHHTCSEEEEEEC
T ss_pred EEEEECCCCCCHHHHHHHHH----------hCCEEEEeeEEEEecCCeEEEEEECCChHHHHHHHHHHHHHCCEEEEEEc
Confidence 99999999999999999977 22333333334445455679999999999988777777899999999999
Q ss_pred CCChhhhhhHHHHHHHHhhhcCCCCE-EEEEe-CCCCCccccC----HHHHHHHHHc---CCeEEE--eccCC---CCCh
Q 030504 95 VTARLTYKNVPTWHRDLCRVCENIPI-VLCGN-KVDVKNRQVK----AKQVTFHRKK---NLQYYE--ISAKS---NYNF 160 (176)
Q Consensus 95 ~~~~~s~~~~~~~~~~~~~~~~~~p~-liv~n-K~Dl~~~~~~----~~~~~~~~~~---~~~~~~--~S~~~---~~~v 160 (176)
+... ......++..+... +.|. ++++| |+|+ +.... .+..++++.. .+++++ +||++ +.|+
T Consensus 93 -~~g~-~~qt~e~~~~~~~~--~i~~~ivvvNNK~Dl-~~~~~~~~~~~i~~~l~~~~~~~~~ii~~~~SA~~~~~g~gi 167 (370)
T 2elf_A 93 -PQGL-DAHTGECIIALDLL--GFKHGIIALTRSDST-HMHAIDELKAKLKVITSGTVLQDWECISLNTNKSAKNPFEGV 167 (370)
T ss_dssp -TTCC-CHHHHHHHHHHHHT--TCCEEEEEECCGGGS-CHHHHHHHHHHHHHHTTTSTTTTCEEEECCCCTTSSSTTTTH
T ss_pred -CCCC-cHHHHHHHHHHHHc--CCCeEEEEEEeccCC-CHHHHHHHHHHHHHHHHhcCCCceEEEecccccccCcCCCCH
Confidence 5432 33344444444443 6787 88999 9999 53221 2233444443 368999 99999 9999
Q ss_pred HHHHHHHHHHHh
Q 030504 161 EKPFLYLARKLA 172 (176)
Q Consensus 161 ~~~~~~l~~~i~ 172 (176)
++++++|.+.+.
T Consensus 168 ~~L~~~l~~~~~ 179 (370)
T 2elf_A 168 DELKARINEVAE 179 (370)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHhhcc
Confidence 999999988754
|
| >2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A | Back alignment and structure |
|---|
Probab=99.90 E-value=1.1e-22 Score=146.62 Aligned_cols=158 Identities=16% Similarity=0.069 Sum_probs=102.8
Q ss_pred eeE-EEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccc---------cccccccc
Q 030504 13 SFK-LVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK---------FGGLRDGY 82 (176)
Q Consensus 13 ~~~-i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~---------~~~~~~~~ 82 (176)
.++ |+++|.+|+|||||+|++.+........+....+.....+.+++ ..+.+|||+|.-. +.... ..
T Consensus 178 ~~~~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g--~~v~l~DT~G~i~~lp~~lve~f~~tl-~~ 254 (364)
T 2qtf_A 178 NIPSIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINN--RKIMLVDTVGFIRGIPPQIVDAFFVTL-SE 254 (364)
T ss_dssp -CCEEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETT--EEEEEEECCCBCSSCCGGGHHHHHHHH-HG
T ss_pred CCcEEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECC--EEEEEEeCCCchhcCCHHHHHHHHHHH-HH
Confidence 455 99999999999999999876654221111111122333444444 5678999999622 22222 24
Q ss_pred cccccEEEEEEeCCChh--hhhhHHHHHHHHhhhc-CCCCEEEEEeCCCCCccccCH---HHHHHHHHc---CCeEEEec
Q 030504 83 YIHGQCAIIMFDVTARL--TYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNRQVKA---KQVTFHRKK---NLQYYEIS 153 (176)
Q Consensus 83 ~~~~~~~i~v~d~~~~~--s~~~~~~~~~~~~~~~-~~~p~liv~nK~Dl~~~~~~~---~~~~~~~~~---~~~~~~~S 153 (176)
+..+|++++|+|++++. ..+....|...+.... .+.|+++|+||+|+....... ....+++.. +.+++++|
T Consensus 255 ~~~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~l~~~l~~~~~~~~~~S 334 (364)
T 2qtf_A 255 AKYSDALILVIDSTFSENLLIETLQSSFEILREIGVSGKPILVTLNKIDKINGDLYKKLDLVEKLSKELYSPIFDVIPIS 334 (364)
T ss_dssp GGGSSEEEEEEETTSCHHHHHHHHHHHHHHHHHHTCCSCCEEEEEECGGGCCSCHHHHHHHHHHHHHHHCSCEEEEEECB
T ss_pred HHhCCEEEEEEECCCCcchHHHHHHHHHHHHHHhCcCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHhcCCCCcEEEEE
Confidence 67899999999999876 4555555555544432 578999999999987543211 111233444 34789999
Q ss_pred cCCCCChHHHHHHHHHHHhc
Q 030504 154 AKSNYNFEKPFLYLARKLAG 173 (176)
Q Consensus 154 ~~~~~~v~~~~~~l~~~i~~ 173 (176)
|+++.|+++++++|.+.+.+
T Consensus 335 A~~g~gi~~L~~~I~~~l~~ 354 (364)
T 2qtf_A 335 ALKRTNLELLRDKIYQLATQ 354 (364)
T ss_dssp TTTTBSHHHHHHHHHHHHHH
T ss_pred CCCCcCHHHHHHHHHHHhcc
Confidence 99999999999999987654
|
| >2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.89 E-value=4.8e-24 Score=153.94 Aligned_cols=158 Identities=18% Similarity=0.295 Sum_probs=86.4
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHhcC-CCCCcc--------ccceeEEEeEEEEEecCcEEEEEEEeCCCc-------ccc
Q 030504 12 PSFKLVIVGDGGTGKTTFVKRHLTG-EFEKKY--------EPTIGVEVHPLDFFTNCGKIRFYCWDTAGQ-------EKF 75 (176)
Q Consensus 12 ~~~~i~i~G~~~~GKttl~~~~~~~-~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~-------~~~ 75 (176)
..++|+++|++|+|||||+++++.. .+...+ .++.+...........+..+.+.+|||||+ +.+
T Consensus 36 ~~~~I~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~l~i~DTpG~gd~~~~~e~~ 115 (361)
T 2qag_A 36 FEFTLMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDCF 115 (361)
T ss_dssp CEECEEECCCTTSCHHHHHHHHTTCCC---------------CEEEEEEEEC----CEEEEEEEEC--------------
T ss_pred CCEEEEEEcCCCCCHHHHHHHHhCCCCCCCCcccCCCcccCCceeEEEEEEEeecCCcccceEEEEeccccccCccHHHH
Confidence 4689999999999999999996543 333222 134444443443444455678999999998 666
Q ss_pred ccccc-------cccccccE-----------EEEEEeCCC-hhhhhhHH-HHHHHHhhhcCCCCEEEEEeCCCCCccccC
Q 030504 76 GGLRD-------GYYIHGQC-----------AIIMFDVTA-RLTYKNVP-TWHRDLCRVCENIPIVLCGNKVDVKNRQVK 135 (176)
Q Consensus 76 ~~~~~-------~~~~~~~~-----------~i~v~d~~~-~~s~~~~~-~~~~~~~~~~~~~p~liv~nK~Dl~~~~~~ 135 (176)
..++. .+++.+++ .+++|++++ ..++..+. .++..+ ..+.|+++|+||+|+......
T Consensus 116 ~~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~~~~l~~~d~~~~~~l---~~~~piIlV~NK~Dl~~~~ev 192 (361)
T 2qag_A 116 KTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDVAFMKAI---HNKVNIVPVIAKADTLTLKER 192 (361)
T ss_dssp CCTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSSSSSCCHHHHHHHHHT---CS-SCEEEEEECCSSSCHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecCCCCcchhHHHHHHHh---ccCCCEEEEEECCCCCCHHHH
Confidence 66654 44443332 234455443 44555554 333333 258999999999999764322
Q ss_pred ----HHHHHHHHHcCCeEEEeccCCCCChHHHHHHHHHHHhc
Q 030504 136 ----AKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAG 173 (176)
Q Consensus 136 ----~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l~~~i~~ 173 (176)
.+..+++...+++++++||+++.+ ++.|.++.+.+.+
T Consensus 193 ~~~k~~i~~~~~~~~i~~~~~Sa~~~~~-~e~~~~l~~~i~~ 233 (361)
T 2qag_A 193 ERLKKRILDEIEEHNIKIYHLPDAESDE-DEDFKEQTRLLKA 233 (361)
T ss_dssp HHHHHHHHHHTTCC-CCSCCCC----------CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCEEeCCCcCCCc-chhHHHHHHHHHh
Confidence 234566677789999999999999 8888888887754
|
| >1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A | Back alignment and structure |
|---|
Probab=99.89 E-value=1e-23 Score=156.87 Aligned_cols=154 Identities=18% Similarity=0.206 Sum_probs=90.2
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHhc--CCCCCcc---------------------------ccceeEEEeEEEEEecCcE
Q 030504 11 YPSFKLVIVGDGGTGKTTFVKRHLT--GEFEKKY---------------------------EPTIGVEVHPLDFFTNCGK 61 (176)
Q Consensus 11 ~~~~~i~i~G~~~~GKttl~~~~~~--~~~~~~~---------------------------~~~~~~~~~~~~~~~~~~~ 61 (176)
.+.+||+++|+.++|||||+++++. +.+.... ....|.+.......+....
T Consensus 41 k~~~~i~iiG~vd~GKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~~~~~~~~~~~ 120 (467)
T 1r5b_A 41 KEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFETEH 120 (467)
T ss_dssp CEEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEECSS
T ss_pred CCeeEEEEEECCCCCHHHHHHHHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEEeeeEEEecCC
Confidence 4578999999999999999999864 3321100 0012233322222233345
Q ss_pred EEEEEEeCCCccccccccccccccccEEEEEEeCCChh---hhhhHHHHHHHHhh-hcCCCC-EEEEEeCCCCCccc---
Q 030504 62 IRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARL---TYKNVPTWHRDLCR-VCENIP-IVLCGNKVDVKNRQ--- 133 (176)
Q Consensus 62 ~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~---s~~~~~~~~~~~~~-~~~~~p-~liv~nK~Dl~~~~--- 133 (176)
..+.+|||||++.|...+...+..+|++|+|+|++++. +|+...++.+.+.. ...+.| +++++||+|+....
T Consensus 121 ~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~~~~~vp~iivviNK~Dl~~~~~~~ 200 (467)
T 1r5b_A 121 RRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLARTQGINHLVVVINKMDEPSVQWSE 200 (467)
T ss_dssp EEEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHHTTCSSEEEEEECTTSTTCSSCH
T ss_pred eEEEEEECCCcHHHHHHHHhhcccCCEEEEEEeCCcCccccccCCCCcHHHHHHHHHHcCCCEEEEEEECccCCCccccH
Confidence 68999999999999988888899999999999999863 34322222222111 113777 99999999996422
Q ss_pred -----cCHHHHHHHHHc-------CCeEEEeccCCCCChHHHH
Q 030504 134 -----VKAKQVTFHRKK-------NLQYYEISAKSNYNFEKPF 164 (176)
Q Consensus 134 -----~~~~~~~~~~~~-------~~~~~~~S~~~~~~v~~~~ 164 (176)
...+...+++.. +++++++||++|.|+.+++
T Consensus 201 ~~~~~i~~e~~~~l~~~~g~~~~~~~~~i~vSA~~g~~i~~l~ 243 (467)
T 1r5b_A 201 ERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRV 243 (467)
T ss_dssp HHHHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSCC
T ss_pred HHHHHHHHHHHHHHHHhcCCCccCCceEEeccccccccccccc
Confidence 112344555554 4679999999999998755
|
| >3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B | Back alignment and structure |
|---|
Probab=99.89 E-value=6e-23 Score=163.13 Aligned_cols=161 Identities=15% Similarity=0.068 Sum_probs=113.1
Q ss_pred CCCCeeEEEEEcCCCCcHHHHHHHHhcCC-------CCC-------ccccceeEEEeEEEEEecCcEEEEEEEeCCCccc
Q 030504 9 VDYPSFKLVIVGDGGTGKTTFVKRHLTGE-------FEK-------KYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK 74 (176)
Q Consensus 9 ~~~~~~~i~i~G~~~~GKttl~~~~~~~~-------~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~ 74 (176)
...+.+||+++|++++|||||++++.... +.. ....+.|++.......++.....+.+|||||++.
T Consensus 292 ~~k~~lnIvIIGhvDvGKSTLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~~~~~kI~IIDTPGHed 371 (1289)
T 3avx_A 292 RTKPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTPTRHYAHVDCPGHAD 371 (1289)
T ss_dssp CCCCEEEEEEEESTTSSHHHHHHHHHHHHHHHSCC---------------------CCSCEEEECSSCEEEEEECCCHHH
T ss_pred ccCCeeEEEEEcCCCCCHHHHHHHHHhhhccccccccccccccccccccccCceeEEEEEEEEcCCCEEEEEEECCChHH
Confidence 34578999999999999999999987531 100 1123455555554455555667899999999999
Q ss_pred cccccccccccccEEEEEEeCCChhhhhhHHHHHHHHhhhcCCCC-EEEEEeCCCCCccc-----cCHHHHHHHHHcC--
Q 030504 75 FGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIP-IVLCGNKVDVKNRQ-----VKAKQVTFHRKKN-- 146 (176)
Q Consensus 75 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p-~liv~nK~Dl~~~~-----~~~~~~~~~~~~~-- 146 (176)
|.......+..+|++|+|+|++++...+.. .++..+... +.| +++++||+|+.+.. ...+...++...+
T Consensus 372 F~~~mi~gas~AD~aILVVDAtdGv~~QTr-EhL~ll~~l--gIP~IIVVINKiDLv~d~e~le~i~eEi~elLk~~G~~ 448 (1289)
T 3avx_A 372 YVKNMITGAAQMDGAILVVAATDGPMPQTR-EHILLGRQV--GVPYIIVFLNKCDMVDDEELLELVEMEVRELLSQYDFP 448 (1289)
T ss_dssp HHHHHHHTSCCCSEEEEEEETTTCSCTTHH-HHHHHHHHH--TCSCEEEEEECCTTCCCHHHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHhhCCEEEEEEcCCccCcHHHH-HHHHHHHHc--CCCeEEEEEeecccccchhhHHHHHHHHHHHHHhcccc
Confidence 988888889999999999999987544433 333444443 788 78999999997522 1223445666655
Q ss_pred ---CeEEEeccCCC--------CChHHHHHHHHHHHh
Q 030504 147 ---LQYYEISAKSN--------YNFEKPFLYLARKLA 172 (176)
Q Consensus 147 ---~~~~~~S~~~~--------~~v~~~~~~l~~~i~ 172 (176)
++++++||++| .|+.+++++|.+.+.
T Consensus 449 ~~~vp~IpvSAktG~ng~~~w~eGI~eLleaL~~~Ip 485 (1289)
T 3avx_A 449 GDDTPIVRGSALKALEGDAEWEAKILELAGFLDSYIP 485 (1289)
T ss_dssp TTTCCEEECCSTTTTTCCHHHHHHHHHHHHHHHHTSC
T ss_pred ccceeEEEEEeccCCCCCccccccchhhHhHHhhhcC
Confidence 68999999999 468999999887654
|
| >3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.88 E-value=4.5e-23 Score=157.42 Aligned_cols=153 Identities=18% Similarity=0.167 Sum_probs=103.0
Q ss_pred CCCeeEEEEEcCCCCcHHHHHHHHhcCCCCCcc-----------------------------ccceeEEEeEEEEEecCc
Q 030504 10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKY-----------------------------EPTIGVEVHPLDFFTNCG 60 (176)
Q Consensus 10 ~~~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~-----------------------------~~~~~~~~~~~~~~~~~~ 60 (176)
..+.+||+++|++++|||||+++++.....-.. ....|++.......+...
T Consensus 164 ~k~~lkV~ivG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~~~~~~ 243 (611)
T 3izq_1 164 ALPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTH 243 (611)
T ss_dssp CCCCCEEEEECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCCEEECS
T ss_pred cCCceEEEEEECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeEEEecC
Confidence 356899999999999999999998754221000 001244444444444456
Q ss_pred EEEEEEEeCCCccccccccccccccccEEEEEEeCCChh---hhh---hHHHHHHHHhhhcCCCCEEEEEeCCCCCccc-
Q 030504 61 KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARL---TYK---NVPTWHRDLCRVCENIPIVLCGNKVDVKNRQ- 133 (176)
Q Consensus 61 ~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~---s~~---~~~~~~~~~~~~~~~~p~liv~nK~Dl~~~~- 133 (176)
...+.+|||||++.+...+...+..+|++|+|+|++++. ++. .....+... ......|+++|+||+|+.+..
T Consensus 244 ~~~~~iiDTPG~e~f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l~~~-~~lgi~~iIVVvNKiDl~~~~~ 322 (611)
T 3izq_1 244 RANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLA-SSLGIHNLIIAMNKMDNVDWSQ 322 (611)
T ss_dssp SCEEEEEECCSSSCHHHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHHHHHHH-HTTTCCEEEEEEECTTTTTTCH
T ss_pred CceEEEEECCCCcccHHHHHHHHhhcCceEEEEECCCCcccccchhhhHHHHHHHHH-HHcCCCeEEEEEecccccchhH
Confidence 678999999999999988899999999999999998753 111 111111222 222234599999999997621
Q ss_pred -----cCHHHHHHHHHcC-----CeEEEeccCCCCChHHH
Q 030504 134 -----VKAKQVTFHRKKN-----LQYYEISAKSNYNFEKP 163 (176)
Q Consensus 134 -----~~~~~~~~~~~~~-----~~~~~~S~~~~~~v~~~ 163 (176)
...+...++...+ ++++++||++|.|+.++
T Consensus 323 ~~~~ei~~~l~~~l~~~g~~~~~~~~i~vSA~tG~gI~el 362 (611)
T 3izq_1 323 QRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKI 362 (611)
T ss_dssp HHHHHHHHHHHHHHHHHTCCGGGCEEEECCTTTCTTTSSC
T ss_pred HHHHHHHHHHHHHHHhhcccccCccEEeeecccCCCcccc
Confidence 1122334444443 58999999999999875
|
| >1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A | Back alignment and structure |
|---|
Probab=99.88 E-value=2.1e-23 Score=154.91 Aligned_cols=151 Identities=16% Similarity=0.198 Sum_probs=103.0
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHhcC--CCCCc------------------c---------ccceeEEEeEEEEEecCcE
Q 030504 11 YPSFKLVIVGDGGTGKTTFVKRHLTG--EFEKK------------------Y---------EPTIGVEVHPLDFFTNCGK 61 (176)
Q Consensus 11 ~~~~~i~i~G~~~~GKttl~~~~~~~--~~~~~------------------~---------~~~~~~~~~~~~~~~~~~~ 61 (176)
.+.++|+++|++++|||||+++++.. .+... + ....|++.......++...
T Consensus 5 ~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi~~~~~~~~~~~ 84 (458)
T 1f60_A 5 KSHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFETPK 84 (458)
T ss_dssp CEEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEECSS
T ss_pred CceeEEEEEcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcEEEEEEEEEecCC
Confidence 46799999999999999999998753 22110 0 0012333333333444556
Q ss_pred EEEEEEeCCCccccccccccccccccEEEEEEeCCChh---hhh---hHHHHHHHHhhhcCCCC-EEEEEeCCCCCc--c
Q 030504 62 IRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARL---TYK---NVPTWHRDLCRVCENIP-IVLCGNKVDVKN--R 132 (176)
Q Consensus 62 ~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~---s~~---~~~~~~~~~~~~~~~~p-~liv~nK~Dl~~--~ 132 (176)
..+.+|||||++.|...+...+..+|++++|+|++++. +|+ .....+..+.. .+.| +++++||+|+.+ .
T Consensus 85 ~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~~~~~~~~~--~~v~~iivviNK~Dl~~~~~ 162 (458)
T 1f60_A 85 YQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFT--LGVRQLIVAVNKMDSVKWDE 162 (458)
T ss_dssp EEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHH--TTCCEEEEEEECGGGGTTCH
T ss_pred ceEEEEECCCcHHHHHHHHhhhhhCCEEEEEEeCCcCccccccCcchhHHHHHHHHHH--cCCCeEEEEEEccccccCCH
Confidence 78999999999999888888899999999999999763 332 22222222222 2665 899999999973 1
Q ss_pred c----cCHHHHHHHHHcC-----CeEEEeccCCCCChHHH
Q 030504 133 Q----VKAKQVTFHRKKN-----LQYYEISAKSNYNFEKP 163 (176)
Q Consensus 133 ~----~~~~~~~~~~~~~-----~~~~~~S~~~~~~v~~~ 163 (176)
. ...+...+++..+ ++++++||++|.|+.++
T Consensus 163 ~~~~~i~~~~~~~l~~~g~~~~~~~~i~vSA~~g~nv~~~ 202 (458)
T 1f60_A 163 SRFQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMIEA 202 (458)
T ss_dssp HHHHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTTTBC
T ss_pred HHHHHHHHHHHHHHHHcCCCccCceEEEeecccCcCcccc
Confidence 1 1223345555554 68999999999998743
|
| >1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.88 E-value=6.6e-22 Score=132.94 Aligned_cols=158 Identities=13% Similarity=0.002 Sum_probs=97.4
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCcccc----------ccccc
Q 030504 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKF----------GGLRD 80 (176)
Q Consensus 11 ~~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~----------~~~~~ 80 (176)
.+..+|+++|++|||||||++++.+..+...+.++.|.+........++ .+.+|||||.... .....
T Consensus 24 ~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~---~~~l~Dt~G~~~~~~~~~~~~~~~~~~~ 100 (210)
T 1pui_A 24 DTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVAD---GKRLVDLPGYGYAEVPEEMKRKWQRALG 100 (210)
T ss_dssp SCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEET---TEEEEECCCCC------CCHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEecC---CEEEEECcCCcccccCHHHHHHHHHHHH
Confidence 3567999999999999999999776654445566666655443333333 4679999997431 11122
Q ss_pred ccc---ccccEEEEEEeCCChhhhhhHHHHHHHHhhhcCCCCEEEEEeCCCCCcccc----CHHHHHHHHHcC--CeEEE
Q 030504 81 GYY---IHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQV----KAKQVTFHRKKN--LQYYE 151 (176)
Q Consensus 81 ~~~---~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~~~~~----~~~~~~~~~~~~--~~~~~ 151 (176)
.++ ..++++++++|++++.+.... .....+.. .+.|+++++||+|+..... ......++...+ +.+++
T Consensus 101 ~~~~~~~~~~~~~~v~d~~~~~~~~~~-~~~~~~~~--~~~~~~~v~nK~D~~s~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (210)
T 1pui_A 101 EYLEKRQSLQGLVVLMDIRHPLKDLDQ-QMIEWAVD--SNIAVLVLLTKADKLASGARKAQLNMVREAVLAFNGDVQVET 177 (210)
T ss_dssp HHHHHCTTEEEEEEEEETTSCCCHHHH-HHHHHHHH--TTCCEEEEEECGGGSCHHHHHHHHHHHHHHHGGGCSCEEEEE
T ss_pred HHHHhhhcccEEEEEEECCCCCchhHH-HHHHHHHH--cCCCeEEEEecccCCCchhHHHHHHHHHHHHHhcCCCCceEE
Confidence 233 467999999999886543221 11122222 3889999999999875321 223334444443 57899
Q ss_pred eccCCCCChHHHHHHHHHHHhcC
Q 030504 152 ISAKSNYNFEKPFLYLARKLAGS 174 (176)
Q Consensus 152 ~S~~~~~~v~~~~~~l~~~i~~~ 174 (176)
+|++++.|+++++++|.+.+.+.
T Consensus 178 ~Sal~~~~~~~l~~~l~~~~~~~ 200 (210)
T 1pui_A 178 FSSLKKQGVDKLRQKLDTWFSEM 200 (210)
T ss_dssp CBTTTTBSHHHHHHHHHHHHC--
T ss_pred EeecCCCCHHHHHHHHHHHHhhc
Confidence 99999999999999999876553
|
| >2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=1.6e-22 Score=142.91 Aligned_cols=159 Identities=13% Similarity=0.184 Sum_probs=101.4
Q ss_pred CCCeeEEEEEcCCCCcHHHHHHHHhcCCCCCc------cccce-----------------e---EEEe------------
Q 030504 10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKK------YEPTI-----------------G---VEVH------------ 51 (176)
Q Consensus 10 ~~~~~~i~i~G~~~~GKttl~~~~~~~~~~~~------~~~~~-----------------~---~~~~------------ 51 (176)
.....+|+++|.+|||||||+|++++..+.+. ..|+. | .+..
T Consensus 23 ~~~~~~i~vvG~~~~GKSSLln~l~g~~~~~~~~~~~t~~p~~~~~~~~~~~~~~~~~~~g~~~tt~~~~~~~~~~~~~~ 102 (299)
T 2aka_B 23 DLDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDR 102 (299)
T ss_dssp TCCCCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHH
T ss_pred CCCCCeEEEEeCCCCCHHHHHHHHHCCCcCCCCCCcccccceEEEEecCCcccchhhhcCCcccCCHHHHHHHHHHHHHH
Confidence 34668999999999999999999887765321 11210 0 0000
Q ss_pred -----------EEEEEec-CcEEEEEEEeCCCccc-------------cccccccccccccEEE-EEEeCCChhhhhhHH
Q 030504 52 -----------PLDFFTN-CGKIRFYCWDTAGQEK-------------FGGLRDGYYIHGQCAI-IMFDVTARLTYKNVP 105 (176)
Q Consensus 52 -----------~~~~~~~-~~~~~~~~~D~~g~~~-------------~~~~~~~~~~~~~~~i-~v~d~~~~~s~~~~~ 105 (176)
...+... .....+.+|||||... +......+++.++.++ +|+|+++..+.....
T Consensus 103 i~g~~~gi~~~~~~~~~~~~~~~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~ 182 (299)
T 2aka_B 103 VTGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDAL 182 (299)
T ss_dssp HCSSTTCCCSCCEEEEEEETTCCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHH
T ss_pred hcccCCCccccceEEEEeCCCCCCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEEEEEecCCcchhhhHHH
Confidence 0000000 1135789999999642 3345556777887666 799998765555444
Q ss_pred HHHHHHhhhcCCCCEEEEEeCCCCCcccc-CHHHHH-HHHH--cC-CeEEEeccCCCCChHHHHHHHHHH
Q 030504 106 TWHRDLCRVCENIPIVLCGNKVDVKNRQV-KAKQVT-FHRK--KN-LQYYEISAKSNYNFEKPFLYLARK 170 (176)
Q Consensus 106 ~~~~~~~~~~~~~p~liv~nK~Dl~~~~~-~~~~~~-~~~~--~~-~~~~~~S~~~~~~v~~~~~~l~~~ 170 (176)
.+...+.. .+.|+++|+||+|+..... ..+... .... .+ .+++++||+++.|++++++++.+.
T Consensus 183 ~~~~~~~~--~~~~~i~V~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~SA~~~~gi~~l~~~l~~~ 250 (299)
T 2aka_B 183 KIAKEVDP--QGQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAAE 250 (299)
T ss_dssp HHHHHHCT--TCSSEEEEEECGGGSCTTCCCHHHHTTCSSCCTTCEEECCCCCCBCTTSCBCHHHHHHHH
T ss_pred HHHHHhCC--CCCeEEEEEEccccCCCCchHHHHHhCCcCcCCCCcEEEECCChhhccccccHHHHHHHH
Confidence 45555543 3789999999999975432 122111 0001 12 368899999999999999998763
|
| >2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W* | Back alignment and structure |
|---|
Probab=99.87 E-value=1.1e-21 Score=147.54 Aligned_cols=118 Identities=17% Similarity=0.184 Sum_probs=81.2
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHhcC--CCCC------------------ccccceeEEEeEEEEEecCcEEEEEEEeCC
Q 030504 11 YPSFKLVIVGDGGTGKTTFVKRHLTG--EFEK------------------KYEPTIGVEVHPLDFFTNCGKIRFYCWDTA 70 (176)
Q Consensus 11 ~~~~~i~i~G~~~~GKttl~~~~~~~--~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~ 70 (176)
...++|+++|++++|||||+++++.. .... ....+.|.+.......+....+.+.+||||
T Consensus 11 ~~~~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~liDTP 90 (529)
T 2h5e_A 11 AKRRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPYHDCLVNLLDTP 90 (529)
T ss_dssp HTEEEEEEEECTTSSHHHHHHHHHHSCC-------------------------------CCTTEEEEEETTEEEEEECCC
T ss_pred cCCCEEEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEEEEECCeEEEEEECC
Confidence 35789999999999999999998852 1100 001123334333334444466789999999
Q ss_pred CccccccccccccccccEEEEEEeCCChhhhhhHHHHHHHHhhhcCCCCEEEEEeCCCCCc
Q 030504 71 GQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKN 131 (176)
Q Consensus 71 g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~~ 131 (176)
|++.+......++..+|++++|+|++++...+. ..++..+.. .+.|+++++||+|+..
T Consensus 91 G~~df~~~~~~~l~~aD~~IlVvDa~~g~~~~t-~~~~~~~~~--~~ipiivviNK~Dl~~ 148 (529)
T 2h5e_A 91 GHEDFSEDTYRTLTAVDCCLMVIDAAKGVEDRT-RKLMEVTRL--RDTPILTFMNKLDRDI 148 (529)
T ss_dssp CSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHH-HHHHHHHTT--TTCCEEEEEECTTSCC
T ss_pred CChhHHHHHHHHHHHCCEEEEEEeCCccchHHH-HHHHHHHHH--cCCCEEEEEcCcCCcc
Confidence 999998888888999999999999998643222 223333333 3899999999999865
|
| >3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=99.87 E-value=6.5e-23 Score=156.12 Aligned_cols=159 Identities=20% Similarity=0.192 Sum_probs=88.4
Q ss_pred CCCeeEEEEEcCCCCcHHHHHHHHhcCC--CCCc---------------------------cccceeEEEeEEEEEecCc
Q 030504 10 DYPSFKLVIVGDGGTGKTTFVKRHLTGE--FEKK---------------------------YEPTIGVEVHPLDFFTNCG 60 (176)
Q Consensus 10 ~~~~~~i~i~G~~~~GKttl~~~~~~~~--~~~~---------------------------~~~~~~~~~~~~~~~~~~~ 60 (176)
..+.+||+++|++++|||||+++++... .... .....|++.......+...
T Consensus 174 ~k~~~~I~iiG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~~~~~~~~ 253 (592)
T 3mca_A 174 PKPVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTTFESD 253 (592)
T ss_dssp CCCEEEEEEECCSSSTHHHHHHHHHHHHHCC-------------------------------------------------
T ss_pred CCCccEEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEEeeEEEEEeC
Confidence 3467899999999999999999986311 0000 0012344555444445555
Q ss_pred EEEEEEEeCCCccccccccccccccccEEEEEEeCCChh---hh---hhHHHHHHHHhhhcCCCC-EEEEEeCCCCCccc
Q 030504 61 KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARL---TY---KNVPTWHRDLCRVCENIP-IVLCGNKVDVKNRQ 133 (176)
Q Consensus 61 ~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~---s~---~~~~~~~~~~~~~~~~~p-~liv~nK~Dl~~~~ 133 (176)
...+.+|||||++.|...+...+..+|++|+|+|++++. ++ ......+..+... +.| +++|+||+|+.+..
T Consensus 254 ~~~i~iiDTPGh~~f~~~~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l~~~~~l--gip~iIvviNKiDl~~~~ 331 (592)
T 3mca_A 254 KKIYEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQNNFERGFLENGQTREHAYLLRAL--GISEIVVSVNKLDLMSWS 331 (592)
T ss_dssp -----CCEEESSSEEEEECCC-------CCSEEEEEECCSSTTSCSCSSHHHHHHHHHHS--SCCCEEEEEECGGGGTTC
T ss_pred CeEEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCccccccccchHHHHHHHHHHHc--CCCeEEEEEecccccccc
Confidence 678999999999999998889999999999999998753 22 1122222222222 565 99999999997521
Q ss_pred --c----CHHHHHHH-HHcCC-----eEEEeccCCCCChH--------------HHHHHHHHH
Q 030504 134 --V----KAKQVTFH-RKKNL-----QYYEISAKSNYNFE--------------KPFLYLARK 170 (176)
Q Consensus 134 --~----~~~~~~~~-~~~~~-----~~~~~S~~~~~~v~--------------~~~~~l~~~ 170 (176)
. ..+...++ +..++ +++++||++|.|+. .+++.|...
T Consensus 332 ~~~~~~i~~el~~~l~~~~g~~~~~~~ii~iSA~~G~gI~e~~~~~~~~w~~g~~Lle~l~~~ 394 (592)
T 3mca_A 332 EDRFQEIKNIVSDFLIKMVGFKTSNVHFVPISAISGTNLIQKDSSDLYKWYKGPTLLSALDQL 394 (592)
T ss_dssp HHHHHHHHHHHHHHHTTTSCCCGGGEEEEEECSSSCSSSCSCCCCGGGGTCCSCCHHHHHHTS
T ss_pred HHHHHHHHHHHHHHHHHhhCCCccceEEEEEecccCcccccccccccccccchHHHHHHHHhh
Confidence 1 12233444 44444 79999999999998 677776553
|
| >2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=2e-21 Score=149.86 Aligned_cols=117 Identities=20% Similarity=0.178 Sum_probs=83.5
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHhcCCCC-------------Ccccc---ceeEEEeEEEEEecCcEEEEEEEeCCCccc
Q 030504 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFE-------------KKYEP---TIGVEVHPLDFFTNCGKIRFYCWDTAGQEK 74 (176)
Q Consensus 11 ~~~~~i~i~G~~~~GKttl~~~~~~~~~~-------------~~~~~---~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~ 74 (176)
.+..+|+++|+.|+|||||+++++..... ..+.+ ..++++...........+.+.+|||||++.
T Consensus 7 ~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~~nliDTpG~~~ 86 (665)
T 2dy1_A 7 AMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDAPGYGD 86 (665)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEECCCSGG
T ss_pred CCCcEEEEECCCCChHHHHHHHHHHhcCCCCccceecCCcccccCCHHHHhcCCeEEecceEEeeCCEEEEEEeCCCccc
Confidence 35679999999999999999998732211 00000 112333333344444567899999999999
Q ss_pred cccccccccccccEEEEEEeCCChhhhhhHHHHHHHHhhhcCCCCEEEEEeCCCCC
Q 030504 75 FGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVK 130 (176)
Q Consensus 75 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~ 130 (176)
+......+++.+|++++|+|+++....+.. .++..+... +.|+++++||+|+.
T Consensus 87 f~~~~~~~l~~ad~~ilVvD~~~g~~~qt~-~~~~~~~~~--~ip~ilv~NKiD~~ 139 (665)
T 2dy1_A 87 FVGEIRGALEAADAALVAVSAEAGVQVGTE-RAWTVAERL--GLPRMVVVTKLDKG 139 (665)
T ss_dssp GHHHHHHHHHHCSEEEEEEETTTCSCHHHH-HHHHHHHHT--TCCEEEEEECGGGC
T ss_pred hHHHHHHHHhhcCcEEEEEcCCcccchhHH-HHHHHHHHc--cCCEEEEecCCchh
Confidence 988888899999999999998876543333 334444443 89999999999987
|
| >1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ... | Back alignment and structure |
|---|
Probab=99.86 E-value=3.1e-21 Score=149.31 Aligned_cols=119 Identities=20% Similarity=0.187 Sum_probs=84.1
Q ss_pred CCCeeEEEEEcCCCCcHHHHHHHHhc--CCCCCc--------cc------cceeEEEeEEEEEecCcEEEEEEEeCCCcc
Q 030504 10 DYPSFKLVIVGDGGTGKTTFVKRHLT--GEFEKK--------YE------PTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73 (176)
Q Consensus 10 ~~~~~~i~i~G~~~~GKttl~~~~~~--~~~~~~--------~~------~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~ 73 (176)
.....||+|+|++++|||||+++++. +..... .. ...+.+............+.+.+|||||+.
T Consensus 9 ~~~~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~~~~~~~~~~~~~i~liDTPG~~ 88 (691)
T 1dar_A 9 LKRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWKDHRINIIDTPGHV 88 (691)
T ss_dssp GGGEEEEEEEECTTSCHHHHHHHHHHHHCC----------------------------CCEEEEEETTEEEEEECCCSST
T ss_pred cccccEEEEECCCCCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhcccccccceEEEEECCeEEEEEECcCcc
Confidence 34678999999999999999999873 221100 00 011222222223333346789999999999
Q ss_pred ccccccccccccccEEEEEEeCCChhhhhhHHHHHHHHhhhcCCCCEEEEEeCCCCCc
Q 030504 74 KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKN 131 (176)
Q Consensus 74 ~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~~ 131 (176)
.+...+..+++.+|++++|+|+++..+.+....|.. +... +.|+++|+||+|+..
T Consensus 89 df~~~~~~~l~~aD~~ilVvDa~~g~~~~t~~~~~~-~~~~--~~p~ivviNKiD~~~ 143 (691)
T 1dar_A 89 DFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQ-AEKY--KVPRIAFANKMDKTG 143 (691)
T ss_dssp TCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHH-HHHT--TCCEEEEEECTTSTT
T ss_pred chHHHHHHHHHHCCEEEEEEECCCCcchhhHHHHHH-HHHc--CCCEEEEEECCCccc
Confidence 998888999999999999999998877766655543 3333 899999999999875
|
| >1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8 | Back alignment and structure |
|---|
Probab=99.86 E-value=4.1e-22 Score=140.72 Aligned_cols=134 Identities=14% Similarity=0.064 Sum_probs=108.8
Q ss_pred HHHHHHhcCCCC-CccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccccccccccEEEEEEeCCChh-hhhhHH
Q 030504 28 TFVKRHLTGEFE-KKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARL-TYKNVP 105 (176)
Q Consensus 28 tl~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~-s~~~~~ 105 (176)
+|+.++..+.|. ..+.||+|..+. ..... .. .+.+||+ +++++.+++.+++++|++++|||++++. +++.+.
T Consensus 32 sl~~~~~~~~f~~~~~~pTiGd~~~-~~~~~--~~-~~~iwD~--qer~~~l~~~~~~~ad~vilV~D~~~~~~s~~~l~ 105 (301)
T 1u0l_A 32 ERILCKLRGKFRLQNLKIYVGDRVE-YTPDE--TG-SGVIENV--LHRKNLLTKPHVANVDQVILVVTVKMPETSTYIID 105 (301)
T ss_dssp CEEEEEECGGGTTTTCCCCTTCEEE-EECCC--SS-SEEEEEE--CCCSCEETTTTEESCCEEEEEECSSTTCCCHHHHH
T ss_pred cEEEEEEcccccccCCCCCCccEEE-EEEcC--CC-eEEEEEE--ccccceeeccccccCCEEEEEEeCCCCCCCHHHHH
Confidence 688888999998 888999994443 33222 22 6889999 8999999999999999999999999987 788888
Q ss_pred HHHHHHhhhcCCCCEEEEEeCCCCCccccCHHHHHHHHHcC--CeEEEeccCCCCChHHHHHHHHH
Q 030504 106 TWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKN--LQYYEISAKSNYNFEKPFLYLAR 169 (176)
Q Consensus 106 ~~~~~~~~~~~~~p~liv~nK~Dl~~~~~~~~~~~~~~~~~--~~~~~~S~~~~~~v~~~~~~l~~ 169 (176)
.|+..+.. .+.|+++|+||+|+.+.....+..+++..++ +.+++|||++|.|++++|.++..
T Consensus 106 ~~l~~~~~--~~~piilv~NK~DL~~~~~v~~~~~~~~~~~~~~~~~~~SAktg~gv~~lf~~l~g 169 (301)
T 1u0l_A 106 KFLVLAEK--NELETVMVINKMDLYDEDDLRKVRELEEIYSGLYPIVKTSAKTGMGIEELKEYLKG 169 (301)
T ss_dssp HHHHHHHH--TTCEEEEEECCGGGCCHHHHHHHHHHHHHHTTTSCEEECCTTTCTTHHHHHHHHSS
T ss_pred HHHHHHHH--CCCCEEEEEeHHHcCCchhHHHHHHHHHHHhhhCcEEEEECCCCcCHHHHHHHhcC
Confidence 89887665 4899999999999976433334556666666 89999999999999999998754
|
| >1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1 | Back alignment and structure |
|---|
Probab=99.84 E-value=2.3e-20 Score=136.29 Aligned_cols=158 Identities=15% Similarity=0.119 Sum_probs=104.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCC-CccccceeEEEeEEEEEecCcEEEEEEEeCCCcccc----ccccccc---cccc
Q 030504 15 KLVIVGDGGTGKTTFVKRHLTGEFE-KKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKF----GGLRDGY---YIHG 86 (176)
Q Consensus 15 ~i~i~G~~~~GKttl~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~----~~~~~~~---~~~~ 86 (176)
.|+|+|++|||||||++++...... ..+..+ ........+..+. ...+.+||+||.... ..+...+ +..+
T Consensus 159 ~VgLVG~~gAGKSTLL~~Lsg~~~~i~~~~ft-Tl~p~~G~V~~~~-~~~~~l~DtpGli~~a~~~~~L~~~fl~~~era 236 (416)
T 1udx_A 159 DVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFT-TLSPNLGVVEVSE-EERFTLADIPGIIEGASEGKGLGLEFLRHIART 236 (416)
T ss_dssp SEEEECCGGGCHHHHHHHHCSSCCEECCCTTC-SSCCEEEEEECSS-SCEEEEEECCCCCCCGGGSCCSCHHHHHHHTSS
T ss_pred EEEEECCCCCcHHHHHHHHHcCCccccCcccc-eecceeeEEEecC-cceEEEEeccccccchhhhhhhhHHHHHHHHHH
Confidence 4899999999999999997654321 011100 0111111222222 246889999997432 2222222 3468
Q ss_pred cEEEEEEeCCChhhhhhHHHHHHHHhhh---cCCCCEEEEEeCCCCCccccCHHHHHHHHHcCCeEEEeccCCCCChHHH
Q 030504 87 QCAIIMFDVTARLTYKNVPTWHRDLCRV---CENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKP 163 (176)
Q Consensus 87 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~---~~~~p~liv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~ 163 (176)
+.++.++|++ ...+..+..+...+... ..+.|.++++||+|+............+...++.++.+||++++|++++
T Consensus 237 ~~lL~vvDls-~~~~~~ls~g~~el~~la~aL~~~P~ILVlNKlDl~~~~~~~~l~~~l~~~g~~vi~iSA~~g~gi~eL 315 (416)
T 1udx_A 237 RVLLYVLDAA-DEPLKTLETLRKEVGAYDPALLRRPSLVALNKVDLLEEEAVKALADALAREGLAVLPVSALTGAGLPAL 315 (416)
T ss_dssp SEEEEEEETT-SCHHHHHHHHHHHHHHHCHHHHHSCEEEEEECCTTSCHHHHHHHHHHHHTTTSCEEECCTTTCTTHHHH
T ss_pred HhhhEEeCCc-cCCHHHHHHHHHHHHHHhHHhhcCCEEEEEECCChhhHHHHHHHHHHHHhcCCeEEEEECCCccCHHHH
Confidence 9999999998 54555565555554433 2368999999999998653223334555566889999999999999999
Q ss_pred HHHHHHHHhcCC
Q 030504 164 FLYLARKLAGST 175 (176)
Q Consensus 164 ~~~l~~~i~~~~ 175 (176)
+++|.+.+.+.+
T Consensus 316 ~~~i~~~l~~~~ 327 (416)
T 1udx_A 316 KEALHALVRSTP 327 (416)
T ss_dssp HHHHHHHHHTSC
T ss_pred HHHHHHHHHhcc
Confidence 999999887653
|
| >2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=2.1e-21 Score=136.98 Aligned_cols=161 Identities=19% Similarity=0.286 Sum_probs=84.7
Q ss_pred CCCeeEEEEEcCCCCcHHHHHHHHhcC-CCCCcc--------ccceeEEEeEEEEEecCcEEEEEEEeCCCc-------c
Q 030504 10 DYPSFKLVIVGDGGTGKTTFVKRHLTG-EFEKKY--------EPTIGVEVHPLDFFTNCGKIRFYCWDTAGQ-------E 73 (176)
Q Consensus 10 ~~~~~~i~i~G~~~~GKttl~~~~~~~-~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~-------~ 73 (176)
..-.++|+++|++|+|||||++++... .+...+ .++.+.....+.....+....+++||++|. +
T Consensus 15 ~~~~~~I~lvG~nG~GKSTLl~~L~g~~~~~~~gi~~~g~~~~~t~~~~~~~~~~q~~~~~~~ltv~Dt~g~~~~~~~~e 94 (301)
T 2qnr_A 15 KGFEFTLMVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRD 94 (301)
T ss_dssp ---CEEEEEEEETTSSHHHHHHHHHC------------------------CEEEEC---CCEEEEEEEEC----------
T ss_pred cCCCEEEEEECCCCCCHHHHHHHHhCCCccCCCCcccCCcccCCcceEeeEEEEecCCCcccCcchhhhhhhhhhcCcHH
Confidence 345689999999999999999996653 333322 112221111222222334568999999998 4
Q ss_pred ccccccc-------ccccc-------------ccEEEEEEeCCChhhhhhHHHHHHHHhhhcCCCCEEEEEeCCCCCccc
Q 030504 74 KFGGLRD-------GYYIH-------------GQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQ 133 (176)
Q Consensus 74 ~~~~~~~-------~~~~~-------------~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~~~~ 133 (176)
.+..... .++.. +++++++.+++. .+++.... ..+.....+.|+++|+||.|+....
T Consensus 95 ~~~~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~-~~Ld~~~~--~~l~~l~~~~~iilV~~K~Dl~~~~ 171 (301)
T 2qnr_A 95 CFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFG-HGLKPLDV--AFMKAIHNKVNIVPVIAKADTLTLK 171 (301)
T ss_dssp -CTTHHHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSSS-SSCCHHHH--HHHHHHTTTSCEEEEECCGGGSCHH
T ss_pred HHHHHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCcc-cCCCHHHH--HHHHHHHhcCCEEEEEEeCCCCCHH
Confidence 4444433 33222 344555555432 23333321 2233333467999999999997532
Q ss_pred c----CHHHHHHHHHcCCeEEEeccCCCCChHHHHHHHHHHHhcC
Q 030504 134 V----KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGS 174 (176)
Q Consensus 134 ~----~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l~~~i~~~ 174 (176)
. ..+..++++..+++++++||+++ |++++|.++++.+.+.
T Consensus 172 e~~~~~~~~~~~~~~~~~~~~e~Sa~~~-~v~e~f~~l~~~i~~~ 215 (301)
T 2qnr_A 172 ERERLKKRILDEIEEHNIKIYHLPDAES-DEDEDFKEQTRLLKAS 215 (301)
T ss_dssp HHHHHHHHHHHHHHHTTCCCCCCC----------CHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHcCCeEEecCCccc-cccHHHHHHHHHhhcC
Confidence 2 23456778888999999999999 9999999999987643
|
| >3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=2.7e-20 Score=129.15 Aligned_cols=119 Identities=13% Similarity=0.144 Sum_probs=82.6
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccccccc------
Q 030504 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYI------ 84 (176)
Q Consensus 11 ~~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~------ 84 (176)
.+.+||+++|.+|+|||||+++++....... .+..+.+...........+..+.+|||||++.+......+++
T Consensus 34 ~~~~~I~lvG~~g~GKSSLin~l~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~l~liDTpG~~~~~~~~~~~~~~i~~~l 112 (262)
T 3def_A 34 MNSMTVLVLGKGGVGKSSTVNSLIGEQVVRV-SPFQAEGLRPVMVSRTMGGFTINIIDTPGLVEAGYVNHQALELIKGFL 112 (262)
T ss_dssp CCEEEEEEEECTTSSHHHHHHHHHTSCCSCC-CSSCC-CCCCEEEEEEETTEEEEEEECCCSEETTEECHHHHHHHHHHT
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCCccc-CCCCCcceeeEEEEEEECCeeEEEEECCCCCCcccchHHHHHHHHHHH
Confidence 4689999999999999999999887664221 222222333333333334568999999999887665554443
Q ss_pred ---cccEEEEEEeCCChhhhhhH-HHHHHHHhhhcC---CCCEEEEEeCCCCCc
Q 030504 85 ---HGQCAIIMFDVTARLTYKNV-PTWHRDLCRVCE---NIPIVLCGNKVDVKN 131 (176)
Q Consensus 85 ---~~~~~i~v~d~~~~~s~~~~-~~~~~~~~~~~~---~~p~liv~nK~Dl~~ 131 (176)
++|++++|++++... +... ..|+..+...+. ..|+++|+||+|+..
T Consensus 113 ~~~~~~~il~V~~~d~~~-~~~~~~~~~~~l~~~~~~~~~~~~ivv~nK~Dl~~ 165 (262)
T 3def_A 113 VNRTIDVLLYVDRLDVYA-VDELDKQVVIAITQTFGKEIWCKTLLVLTHAQFSP 165 (262)
T ss_dssp TTCEECEEEEEEESSCSC-CCHHHHHHHHHHHHHHCGGGGGGEEEEEECTTCCC
T ss_pred hcCCCCEEEEEEcCCCCC-CCHHHHHHHHHHHHHhchhhhcCEEEEEeCcccCC
Confidence 789999999988655 4433 356666655432 359999999999853
|
| >2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H | Back alignment and structure |
|---|
Probab=99.83 E-value=1.3e-19 Score=140.51 Aligned_cols=119 Identities=18% Similarity=0.145 Sum_probs=83.7
Q ss_pred CCCeeEEEEEcCCCCcHHHHHHHHhc--CCCCCc-----------cc---cceeEEEeEEEEEec-------CcEEEEEE
Q 030504 10 DYPSFKLVIVGDGGTGKTTFVKRHLT--GEFEKK-----------YE---PTIGVEVHPLDFFTN-------CGKIRFYC 66 (176)
Q Consensus 10 ~~~~~~i~i~G~~~~GKttl~~~~~~--~~~~~~-----------~~---~~~~~~~~~~~~~~~-------~~~~~~~~ 66 (176)
.....||+|+|+.++|||||+++++. +..... +. ...|.+......... +..+.+.+
T Consensus 7 ~~~~~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g~v~~g~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~i~l 86 (704)
T 2rdo_7 7 IARYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTAFWSGMAKQYEPHRINI 86 (704)
T ss_pred cccccEEEEECCCCCCHHHHHHHHHHhcCCcccccccCCCceeecChhhHHhcCceeeeceEEEEECCccccCCceeEEE
Confidence 34568999999999999999999874 222110 00 012223322222222 23488999
Q ss_pred EeCCCccccccccccccccccEEEEEEeCCChhhhhhHHHHHHHHhhhcCCCCEEEEEeCCCCCc
Q 030504 67 WDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKN 131 (176)
Q Consensus 67 ~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~~ 131 (176)
|||||+..|...+..+++.+|++|+|+|+++....+....|. .... .+.|+++++||+|+..
T Consensus 87 iDTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~qt~~~~~-~~~~--~~ip~ilviNKiD~~~ 148 (704)
T 2rdo_7 87 IDTPGHVDFTIEVERSMRVLDGAVMVYCAVGGVQPQSETVWR-QANK--YKVPRIAFVNKMDRMG 148 (704)
T ss_pred EeCCCccchHHHHHHHHHHCCEEEEEEeCCCCCcHHHHHHHH-HHHH--cCCCEEEEEeCCCccc
Confidence 999999999888888999999999999999876655554443 3333 3899999999999865
|
| >1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=1.2e-20 Score=136.95 Aligned_cols=113 Identities=15% Similarity=0.120 Sum_probs=92.5
Q ss_pred EEEEEEEeCCCccccccccccccccccEEEEEEeCCC----------hhhhhhHHHHHHHHhhh--cCCCCEEEEEeCCC
Q 030504 61 KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTA----------RLTYKNVPTWHRDLCRV--CENIPIVLCGNKVD 128 (176)
Q Consensus 61 ~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~----------~~s~~~~~~~~~~~~~~--~~~~p~liv~nK~D 128 (176)
.+.+.+|||+|++.++..|..++++++++|+|||+++ ..+++.+..|+..+... .++.|+++|+||+|
T Consensus 216 ~v~l~iwDtaGQe~~r~~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~~~~~~~i~~~~~~~~~piiLvgNK~D 295 (402)
T 1azs_C 216 KVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRTISVILFLNKQD 295 (402)
T ss_dssp TEEEEEEEECCSGGGGGGGGGGTTTCCEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCTTCSSCCEEEEEECHH
T ss_pred CccceecccchhhhhhhhhHhhccCCCEEEEEEECcccccccccccccchHHHHHHHHHHHHhcccCCCCeEEEEEEChh
Confidence 4889999999999999999999999999999999998 78899999998888654 46899999999999
Q ss_pred CCcccc--------------------------------CHHHHHHH-----HH--------cCCeEEEeccCCCCChHHH
Q 030504 129 VKNRQV--------------------------------KAKQVTFH-----RK--------KNLQYYEISAKSNYNFEKP 163 (176)
Q Consensus 129 l~~~~~--------------------------------~~~~~~~~-----~~--------~~~~~~~~S~~~~~~v~~~ 163 (176)
+..+.. ..++..++ .. ..+.+++|||+++.||+++
T Consensus 296 L~~~ki~~~~~~l~~~fp~y~~~~~~~~~~~~~g~~~~~~~a~~fi~~kF~~~~~~~~~~~~~~~~~~TSA~d~~nV~~v 375 (402)
T 1azs_C 296 LLAEKVLAGKSKIEDYFPEFARYTTPEDATPEPGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHFTCAVDTENIRRV 375 (402)
T ss_dssp HHHHHHHHCSSCGGGTCGGGGTCCCCSSCCCCTTCCHHHHHHHHHHHHHHHHHHHTSCTTSSCEEEEECCTTCHHHHHHH
T ss_pred hhhhhhcccccchhhccccccccccccccccccCCcccHHHHHHHHHHHHHHhhccccccCcccEEEEEEeecCcCHHHH
Confidence 854211 11222332 21 3567889999999999999
Q ss_pred HHHHHHHHhc
Q 030504 164 FLYLARKLAG 173 (176)
Q Consensus 164 ~~~l~~~i~~ 173 (176)
|.++...+.+
T Consensus 376 F~~v~~~I~~ 385 (402)
T 1azs_C 376 FNDCRDIIQR 385 (402)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999887764
|
| >2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=2.6e-20 Score=144.29 Aligned_cols=108 Identities=13% Similarity=0.085 Sum_probs=76.6
Q ss_pred EEEEEeCCCccc---cccccccccccccEEEEEEeCCChhhhhhHHHHHHHHhhhcCCCCEEEEEeCCCCCccc---cCH
Q 030504 63 RFYCWDTAGQEK---FGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQ---VKA 136 (176)
Q Consensus 63 ~~~~~D~~g~~~---~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~~~~---~~~ 136 (176)
.+.+|||||... .......++..+|++++|+|++++.+......|...+... +.|+++|+||+|+.... ...
T Consensus 175 ~l~LiDTPGl~~~~~~~~~~~~~i~~aD~vL~Vvda~~~~s~~e~~~l~~~l~~~--~~~iiiVlNK~Dl~~~~~~~~ee 252 (695)
T 2j69_A 175 GIEIVDSPGLNDTEARNELSLGYVNNCHAILFVMRASQPCTLGERRYLENYIKGR--GLTVFFLVNAWDQVRESLIDPDD 252 (695)
T ss_dssp TEEEEECCCHHHHHTCHHHHTHHHHSSSEEEEEEETTSTTCHHHHHHHHHHTTTS--CCCEEEEEECGGGGGGGCSSTTC
T ss_pred CeEEEECCCCCchhhHHHHHHHHHHhCCEEEEEEeCCCccchhHHHHHHHHHHhh--CCCEEEEEECcccccccccChhh
Confidence 589999999654 3345567788999999999999887666655554444332 77899999999986542 100
Q ss_pred ---------HHHH----HHHH---------cCCeEEEeccC--------------CCCChHHHHHHHHHHHh
Q 030504 137 ---------KQVT----FHRK---------KNLQYYEISAK--------------SNYNFEKPFLYLARKLA 172 (176)
Q Consensus 137 ---------~~~~----~~~~---------~~~~~~~~S~~--------------~~~~v~~~~~~l~~~i~ 172 (176)
.... .... ....++++||+ ++.|+++++.++.+.+.
T Consensus 253 ~e~l~~~~~~i~~~~~~~l~~~~~~~g~~~~~~~v~~vSAk~al~~~~~~~~~~~~~~Gi~~L~~~L~~~l~ 324 (695)
T 2j69_A 253 VEELQASENRLRQVFNANLAEYCTVEGQNIYDERVFELSSIQALRRRLKNPQADLDGTGFPKFMDSLNTFLT 324 (695)
T ss_dssp HHHHHHHHHHHHHHHHHHHGGGGBSSSCBCGGGTEEECCHHHHHHHHHHCTTCCCTTSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccccccCCCcEEEEeChHHHHhhccCchhhhhccCHHHHHHHHHHHHH
Confidence 0111 1111 12469999999 99999999999988764
|
| >2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.83 E-value=8.2e-20 Score=141.47 Aligned_cols=119 Identities=18% Similarity=0.180 Sum_probs=84.3
Q ss_pred CCCeeEEEEEcCCCCcHHHHHHHHhc--CCCCCc--------ccc------ceeEEEeEEEEEecCcEEEEEEEeCCCcc
Q 030504 10 DYPSFKLVIVGDGGTGKTTFVKRHLT--GEFEKK--------YEP------TIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73 (176)
Q Consensus 10 ~~~~~~i~i~G~~~~GKttl~~~~~~--~~~~~~--------~~~------~~~~~~~~~~~~~~~~~~~~~~~D~~g~~ 73 (176)
.....+|+|+|.+|+|||||+++++. +..... ... ..+++............+.+.+|||||+.
T Consensus 7 ~~~~~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~ 86 (693)
T 2xex_A 7 LEKTRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAAWEGHRVNIIDTPGHV 86 (693)
T ss_dssp STTEEEEEEECCGGGTHHHHHHHHHHHHSSCC-------------------------CCSEEEEEETTEEEEEECCCCCS
T ss_pred cccceEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCceecccchhhhhcCceEeeeeEEEEECCeeEEEEECcCCc
Confidence 34678999999999999999999874 332110 000 11223322223333345789999999999
Q ss_pred ccccccccccccccEEEEEEeCCChhhhhhHHHHHHHHhhhcCCCCEEEEEeCCCCCc
Q 030504 74 KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKN 131 (176)
Q Consensus 74 ~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~~ 131 (176)
.+...+..+++.+|++++|+|+++..+.+....|. .+... +.|+++|+||+|+..
T Consensus 87 df~~~~~~~l~~aD~~llVvDa~~g~~~~~~~~~~-~~~~~--~~p~ilviNK~Dl~~ 141 (693)
T 2xex_A 87 DFTVEVERSLRVLDGAVTVLDAQSGVEPQTETVWR-QATTY--GVPRIVFVNKMDKLG 141 (693)
T ss_dssp SCCHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHH-HHHHT--TCCEEEEEECTTSTT
T ss_pred chHHHHHHHHHHCCEEEEEECCCCCCcHHHHHHHH-HHHHc--CCCEEEEEECCCccc
Confidence 99888888999999999999999877666655554 34433 899999999999875
|
| >1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=4.4e-20 Score=128.68 Aligned_cols=119 Identities=13% Similarity=0.136 Sum_probs=82.5
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCcccccccccc---------
Q 030504 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDG--------- 81 (176)
Q Consensus 11 ~~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~--------- 81 (176)
...++|+++|.+|+|||||+|+++...+.. ..++.+.+...........+..+.+|||||++.+......
T Consensus 37 ~~~~~I~vvG~~g~GKSSLin~l~~~~~~~-~~~~~~~t~~~~~~~~~~~~~~l~iiDTpG~~~~~~~~~~~~~~i~~~~ 115 (270)
T 1h65_A 37 VNSLTILVMGKGGVGKSSTVNSIIGERVVS-ISPFQSEGPRPVMVSRSRAGFTLNIIDTPGLIEGGYINDMALNIIKSFL 115 (270)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHTSCCSC-CCSSSCCCSSCEEEEEEETTEEEEEEECCCSEETTEECHHHHHHHHHHT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHhCCCccc-ccCCCCcceeeEEEEEeeCCeEEEEEECCCCCCCccchHHHHHHHHHHh
Confidence 457999999999999999999988766432 1223333444444444445678999999999776543221
Q ss_pred ccccccEEEEEEeCCChhhhhhH-HHHHHHHhhhcCC---CCEEEEEeCCCCCc
Q 030504 82 YYIHGQCAIIMFDVTARLTYKNV-PTWHRDLCRVCEN---IPIVLCGNKVDVKN 131 (176)
Q Consensus 82 ~~~~~~~~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~---~p~liv~nK~Dl~~ 131 (176)
....+|++++|+|++.. ++... ..|+..+...+.. .|+++|+||+|+..
T Consensus 116 ~~~~~d~il~v~~~d~~-~~~~~~~~~~~~l~~~~~~~~~~~iivV~nK~Dl~~ 168 (270)
T 1h65_A 116 LDKTIDVLLYVDRLDAY-RVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSP 168 (270)
T ss_dssp TTCEECEEEEEEESSCC-CCCHHHHHHHHHHHHHHCGGGGGGEEEEEECCSCCC
T ss_pred hcCCCCEEEEEEeCCCC-cCCHHHHHHHHHHHHHhCcccccCEEEEEECcccCC
Confidence 13478999999998753 34433 3566666554332 69999999999864
|
| >1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B* | Back alignment and structure |
|---|
Probab=99.82 E-value=1.2e-19 Score=128.98 Aligned_cols=109 Identities=8% Similarity=0.083 Sum_probs=70.3
Q ss_pred EEEEEEeCCCccc-------------cccccccccccccEEEEEEeCCChh-hhhhHHHHHHHHhhhcCCCCEEEEEeCC
Q 030504 62 IRFYCWDTAGQEK-------------FGGLRDGYYIHGQCAIIMFDVTARL-TYKNVPTWHRDLCRVCENIPIVLCGNKV 127 (176)
Q Consensus 62 ~~~~~~D~~g~~~-------------~~~~~~~~~~~~~~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~p~liv~nK~ 127 (176)
..+.+|||||... +......++..+|++++|+|+++.. .......+...+.. .+.|+++|+||+
T Consensus 131 ~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~~~~~~~~~~~~i~~~~~~--~~~~~i~v~NK~ 208 (315)
T 1jwy_B 131 VNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDLANSDALQLAKEVDP--EGKRTIGVITKL 208 (315)
T ss_dssp CSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSCSTTCSHHHHHHHHCS--SCSSEEEEEECT
T ss_pred CCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEecCcchhhhHHHHHHHHhCC--CCCcEEEEEcCc
Confidence 4689999999753 3344556788999999999975432 21222233334433 378999999999
Q ss_pred CCCccccCHHHHHHHHH----cCCeEEEeccC---C---CCChHHHHHHHHHHHhcC
Q 030504 128 DVKNRQVKAKQVTFHRK----KNLQYYEISAK---S---NYNFEKPFLYLARKLAGS 174 (176)
Q Consensus 128 Dl~~~~~~~~~~~~~~~----~~~~~~~~S~~---~---~~~v~~~~~~l~~~i~~~ 174 (176)
|+...... .....+. .+..++++|+. + +.|+.++++.+.+.+.+.
T Consensus 209 Dl~~~~~~--~~~~~~~~~~~~~~~~~~v~~~sa~~~~~~~gv~~l~~~~~~~~~~~ 263 (315)
T 1jwy_B 209 DLMDKGTD--AMEVLTGRVIPLTLGFIGVINRSQEDIIAKKSIRESLKSEILYFKNH 263 (315)
T ss_dssp TSSCSSCC--CHHHHTTSSSCCTTCEEECCCCCHHHHSSSCCHHHHHHHHHHHHHTC
T ss_pred ccCCcchH--HHHHHhCCCccCCCCeEEEecCChhhhccCCCHHHHHHHHHHHHhCC
Confidence 99754331 1222222 22566666554 4 789999999988877553
|
| >1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2 | Back alignment and structure |
|---|
Probab=99.81 E-value=1.2e-20 Score=137.47 Aligned_cols=85 Identities=26% Similarity=0.288 Sum_probs=48.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCC-cc-----ccceeEEEeEEE---------------EEecC-cEEEEEEEeCCC
Q 030504 14 FKLVIVGDGGTGKTTFVKRHLTGEFEK-KY-----EPTIGVEVHPLD---------------FFTNC-GKIRFYCWDTAG 71 (176)
Q Consensus 14 ~~i~i~G~~~~GKttl~~~~~~~~~~~-~~-----~~~~~~~~~~~~---------------~~~~~-~~~~~~~~D~~g 71 (176)
++|+++|.+|||||||+|++.+..... .+ .+..|....... ...++ ..+.+.+|||||
T Consensus 1 ~kI~ivG~pnvGKSTL~n~L~~~~~~~~~~p~tT~~~~~g~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~i~lvDtpG 80 (397)
T 1wxq_A 1 MEIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVAG 80 (397)
T ss_dssp CEEEEEECTTSSHHHHHHHHHC--------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC-
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCcccCCCCcccCCceEEEeeccCCchHHhhhhcccccccccCCcceEEEEEEECCC
Confidence 589999999999999999988765321 11 122222111000 00121 247899999999
Q ss_pred cccc----cccc---ccccccccEEEEEEeCCCh
Q 030504 72 QEKF----GGLR---DGYYIHGQCAIIMFDVTAR 98 (176)
Q Consensus 72 ~~~~----~~~~---~~~~~~~~~~i~v~d~~~~ 98 (176)
.... +.+. ...++.+|++++|+|+++.
T Consensus 81 ~~~~a~~~~~l~~~~l~~i~~aD~il~VvD~~~~ 114 (397)
T 1wxq_A 81 LVPGAHEGRGLGNKFLDDLRMASALIHVVDATGK 114 (397)
T ss_dssp --------------CCCSSTTCSEEEEEEETTCC
T ss_pred cccchhhhhhHHHHHHHHHhcCCEEEEEEecccc
Confidence 7542 2222 2457899999999999875
|
| >2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.81 E-value=1.8e-19 Score=131.73 Aligned_cols=160 Identities=15% Similarity=0.174 Sum_probs=81.7
Q ss_pred CCCCeeEEEEEcCCCCcHHHHHHHHhcCCCCCcc--------ccceeEEEeEEEEEecCcEEEEEEEeCCCcccccc---
Q 030504 9 VDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKY--------EPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGG--- 77 (176)
Q Consensus 9 ~~~~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~--- 77 (176)
...-.++|+|+|++|+|||||++.+.+....... .++.+.....+.....+....+++||++|......
T Consensus 27 l~~vsf~I~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~~~~i~~v~q~~~~~~~Ltv~Dt~g~~~~~~~~~ 106 (418)
T 2qag_C 27 KRGFEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSN 106 (418)
T ss_dssp C-CCCEEEEEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCEEEEEECC------CEEEEEEECC----------
T ss_pred ecCCCEEEEEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCccceeeeeEEEEEecCCcccceeeeechhhhhhccchh
Confidence 3345688999999999999999997765542111 12222222111222223345789999999765311
Q ss_pred ----------------------ccccccccccEEEEEEeCCCh-hhhhhHH-HHHHHHhhhcCCCCEEEEEeCCCCCccc
Q 030504 78 ----------------------LRDGYYIHGQCAIIMFDVTAR-LTYKNVP-TWHRDLCRVCENIPIVLCGNKVDVKNRQ 133 (176)
Q Consensus 78 ----------------------~~~~~~~~~~~~i~v~d~~~~-~s~~~~~-~~~~~~~~~~~~~p~liv~nK~Dl~~~~ 133 (176)
+.++++..+++.+++|+.... .++.... .|+..+. .+.|+++|+||+|+....
T Consensus 107 ~~~~i~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~~~lk~L~---~~v~iIlVinK~Dll~~~ 183 (418)
T 2qag_C 107 CWQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLH---EKVNIIPLIAKADTLTPE 183 (418)
T ss_dssp -CHHHHHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHHHHHHHHT---TTSEEEEEEESTTSSCHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHHHHHHHHh---ccCcEEEEEEcccCccHH
Confidence 234455566655555555432 3454444 4555553 378999999999987532
Q ss_pred cC----HHHHHHHHHcCCeEEEeccCCCCChHHHHHHHHHHH
Q 030504 134 VK----AKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171 (176)
Q Consensus 134 ~~----~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l~~~i 171 (176)
.. ......+...+++++++|++++.+++++|..+...+
T Consensus 184 ev~~~k~~i~~~~~~~~i~~~~~sa~~~~~v~~~~~~l~~~i 225 (418)
T 2qag_C 184 ECQQFKKQIMKEIQEHKIKIYEFPETDDEEENKLVKKIKDRL 225 (418)
T ss_dssp HHHHHHHHHHHHHHHHTCCCCCCC-----------------C
T ss_pred HHHHHHHHHHHHHHHcCCeEEeCCCCCCcCHHHHHHHHHhhC
Confidence 21 345567778899999999999999999888877653
|
| >3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A* | Back alignment and structure |
|---|
Probab=99.79 E-value=1.3e-18 Score=131.53 Aligned_cols=118 Identities=17% Similarity=0.159 Sum_probs=87.5
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHhc--CCC---------------C---CccccceeEEEeEEEEEecCcEEEEEEEeCCC
Q 030504 12 PSFKLVIVGDGGTGKTTFVKRHLT--GEF---------------E---KKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAG 71 (176)
Q Consensus 12 ~~~~i~i~G~~~~GKttl~~~~~~--~~~---------------~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g 71 (176)
+..||+|+|+.++|||||+.+++. |.. . .......|++.......+.++.+.++++||||
T Consensus 30 r~RNiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPG 109 (548)
T 3vqt_A 30 RRRTFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQFPYRDRVVNLLDTPG 109 (548)
T ss_dssp TEEEEEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC--------------------CTTTEEEEEETTEEEEEECCCC
T ss_pred ccceEEEEeCCCCCHHHHHHHHHHhcCcccccceeecCccccccccCChHHHHHCCCcEeeceEEEEECCEEEEEEeCCC
Confidence 467999999999999999999863 110 0 01112235555555556666778899999999
Q ss_pred ccccccccccccccccEEEEEEeCCChhhhhhHHHHHHHHhhhcCCCCEEEEEeCCCCCcc
Q 030504 72 QEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNR 132 (176)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~~~ 132 (176)
|..|.......++-+|++|+|+|+..+-..+....| +.+.+. +.|.++++||.|....
T Consensus 110 HvDF~~Ev~raL~~~DgAvlVvda~~GV~~qT~~v~-~~a~~~--~lp~i~fINK~Dr~~a 167 (548)
T 3vqt_A 110 HQDFSEDTYRVLTAVDSALVVIDAAKGVEAQTRKLM-DVCRMR--ATPVMTFVNKMDREAL 167 (548)
T ss_dssp GGGCSHHHHHHHHSCSEEEEEEETTTBSCHHHHHHH-HHHHHT--TCCEEEEEECTTSCCC
T ss_pred cHHHHHHHHHHHHhcCceEEEeecCCCcccccHHHH-HHHHHh--CCceEEEEecccchhc
Confidence 999999999999999999999999988766666666 344444 9999999999998653
|
| >3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=6e-20 Score=132.81 Aligned_cols=152 Identities=12% Similarity=0.166 Sum_probs=96.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCcccccee----------------------------------------------
Q 030504 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIG---------------------------------------------- 47 (176)
Q Consensus 14 ~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~---------------------------------------------- 47 (176)
.+|+|+|.+|||||||++++.+..+.+....+..
T Consensus 35 p~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~ 114 (360)
T 3t34_A 35 PAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLQKIDDGTREYAEFLHLPRKKFTDFAAVRKEIQDETDRE 114 (360)
T ss_dssp CEEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCCCSCEEEEEEECSSCSCCEEEETTSTTCCBSCHHHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCcHHHHHHHHhCCCcCCCCCCcccCcceEEEEecCCCcccceeeeecCCCcccCCHHHHHHHHHHHHHHh
Confidence 3999999999999999999887665322211110
Q ss_pred ------EEEeEEEEEe-cCcEEEEEEEeCCCcccc-------------ccccccccccccEEEEEEeCCChhhh-hhHHH
Q 030504 48 ------VEVHPLDFFT-NCGKIRFYCWDTAGQEKF-------------GGLRDGYYIHGQCAIIMFDVTARLTY-KNVPT 106 (176)
Q Consensus 48 ------~~~~~~~~~~-~~~~~~~~~~D~~g~~~~-------------~~~~~~~~~~~~~~i~v~d~~~~~s~-~~~~~ 106 (176)
+........+ ......+.+|||||...+ ......++.++|++|+|+|..+.... .....
T Consensus 115 ~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~~~~~~ 194 (360)
T 3t34_A 115 TGRSKAISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQDLATSDAIK 194 (360)
T ss_dssp SCTTCCCCCSCEEEEEEETTSCSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGGCHHHH
T ss_pred cCCCCCcccceEEEEEeCCCCCCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCCHHHHH
Confidence 0000001111 112335899999998765 44566778899999999987654322 22223
Q ss_pred HHHHHhhhcCCCCEEEEEeCCCCCccccC-HH-HHHHHHHcCCeEEEeccCCCCChHHHHHHH
Q 030504 107 WHRDLCRVCENIPIVLCGNKVDVKNRQVK-AK-QVTFHRKKNLQYYEISAKSNYNFEKPFLYL 167 (176)
Q Consensus 107 ~~~~~~~~~~~~p~liv~nK~Dl~~~~~~-~~-~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l 167 (176)
++..+.. .+.|+++|+||+|+.+.... .+ ...+....+.+|+++|+.++.++++.+.++
T Consensus 195 l~~~~~~--~~~~~i~V~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~~~i~~~~~~~ 255 (360)
T 3t34_A 195 ISREVDP--SGDRTFGVLTKIDLMDKGTDAVEILEGRSFKLKYPWVGVVNRSQADINKNVDMI 255 (360)
T ss_dssp HHHHSCT--TCTTEEEEEECGGGCCTTCCSHHHHTTSSSCCSSCCEEECCCCHHHHHTTCCHH
T ss_pred HHHHhcc--cCCCEEEEEeCCccCCCcccHHHHHcCccccccCCeEEEEECChHHhccCCCHH
Confidence 3333322 37899999999998754322 22 223344567889999999998887765543
|
| >2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A | Back alignment and structure |
|---|
Probab=99.78 E-value=9.9e-20 Score=131.31 Aligned_cols=157 Identities=11% Similarity=0.150 Sum_probs=92.8
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHhcCCCCCcc------ccce--------------------------------------
Q 030504 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKY------EPTI-------------------------------------- 46 (176)
Q Consensus 11 ~~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~------~~~~-------------------------------------- 46 (176)
....+|+|+|.+|||||||+|++++..+.+.. .|+.
T Consensus 29 ~~~~~I~vvG~~~~GKSSLln~L~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~tt~~~v~~~i~~~~~~i 108 (353)
T 2x2e_A 29 LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNATTEYAEFLHCKGKKFTDFEEVRLEIEAETDRV 108 (353)
T ss_dssp CCCCEEEEECBTTSSHHHHHHTTTTSCCSCCCSSSCCCSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHhCCCcCCCCCCcccccceEEEEEcCCccceeeeecCCcccCCHHHHHHHHHHHHHHh
Confidence 34579999999999999999998876653211 1110
Q ss_pred -----eEEEeEEEEEec-CcEEEEEEEeCCCccc-------------ccccccccccccc-EEEEEEeCCChhhhhhHHH
Q 030504 47 -----GVEVHPLDFFTN-CGKIRFYCWDTAGQEK-------------FGGLRDGYYIHGQ-CAIIMFDVTARLTYKNVPT 106 (176)
Q Consensus 47 -----~~~~~~~~~~~~-~~~~~~~~~D~~g~~~-------------~~~~~~~~~~~~~-~~i~v~d~~~~~s~~~~~~ 106 (176)
|+........+. .....+.+|||||... +..+...++...+ ++++|.+++....-.....
T Consensus 109 ~g~~~gi~~~~~~~~i~~~~~~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiL~v~~a~~~~~~~~~~~ 188 (353)
T 2x2e_A 109 TGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALK 188 (353)
T ss_dssp HTTTTCCCCCCEEEEEEETTCCSEEEEECCCBCSSCCTTCCTTHHHHHHHHHHHHHTSTTEEEEEEEETTSCGGGCHHHH
T ss_pred cccCCCcccCceEEEEecCCCCCcEEEECCCCCCCccCCCchhHHHHHHHHHHHHHcCCCeEEEEEecCCCccchhHHHH
Confidence 000000001111 1135689999999642 2334455665555 5555666654332222223
Q ss_pred HHHHHhhhcCCCCEEEEEeCCCCCcccc-CHHHHH---HHHHcC-CeEEEeccCCCCChHHHHHHHHH
Q 030504 107 WHRDLCRVCENIPIVLCGNKVDVKNRQV-KAKQVT---FHRKKN-LQYYEISAKSNYNFEKPFLYLAR 169 (176)
Q Consensus 107 ~~~~~~~~~~~~p~liv~nK~Dl~~~~~-~~~~~~---~~~~~~-~~~~~~S~~~~~~v~~~~~~l~~ 169 (176)
++..+.. .+.|+++|+||+|+.+... ..+... +....+ ..++.+||+++.|++++++++.+
T Consensus 189 i~~~~~~--~~~~~i~V~NK~Dl~~~~~~~~~~~~~~~~~l~~~~~~v~~~SA~~~~~i~~l~~~l~~ 254 (353)
T 2x2e_A 189 VAKEVDP--QGQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAA 254 (353)
T ss_dssp HHHHHCT--TCTTEEEEEECGGGSCTTCCCHHHHTTCSSCCTTCEEECCCCCHHHHHTTCCHHHHHHH
T ss_pred HHHHhCc--CCCceEEEeccccccCcchhHHHHHhCCcccccCCceEEEeCCcccccccccHHHHHHH
Confidence 4444433 3789999999999975432 111111 011123 35788999999999999999876
|
| >2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=99.77 E-value=1.7e-18 Score=117.15 Aligned_cols=152 Identities=16% Similarity=0.112 Sum_probs=92.3
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEE--------------eEEEEEe----------------cCcE
Q 030504 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEV--------------HPLDFFT----------------NCGK 61 (176)
Q Consensus 12 ~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~----------------~~~~ 61 (176)
...+|+++|.+|||||||+++++..............+. ....... ....
T Consensus 29 ~~~~i~i~G~~g~GKTTl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (221)
T 2wsm_A 29 GTVAVNIMGAIGSGKTLLIERTIERIGNEVKIGAMLGDVVSKADYERVRRFGIKAEAISTGKECHLDAHMIYHRLKKFSD 108 (221)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHHHHTTTSCEEEEECSCCCHHHHHHHHTTTCEEEECCCTTCSSCCHHHHHTTGGGGTT
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEecCCCCchhHHHHHhCCCcEEEecCCceeecccHHHHHHHHhcCC
Confidence 356899999999999999999875421110001110000 0000000 1123
Q ss_pred EEEEEEeCCCccccccccccccccccEEEEEEeCCChhhhhhHHHHHHHHhhhcCCCCEEEEEeCCCCCccc--cCHHHH
Q 030504 62 IRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQ--VKAKQV 139 (176)
Q Consensus 62 ~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~~~~--~~~~~~ 139 (176)
+.+.+|||+|+-.... .+....+.+++|+|+.+... ....+... . +.|.++|+||+|+.+.. ...+..
T Consensus 109 ~d~iiidt~G~~~~~~---~~~~~~~~~i~vvd~~~~~~--~~~~~~~~---~--~~~~iiv~NK~Dl~~~~~~~~~~~~ 178 (221)
T 2wsm_A 109 CDLLLIENVGNLICPV---DFDLGENYRVVMVSVTEGDD--VVEKHPEI---F--RVADLIVINKVALAEAVGADVEKMK 178 (221)
T ss_dssp CSEEEEEEEEBSSGGG---GCCCSCSEEEEEEEGGGCTT--HHHHCHHH---H--HTCSEEEEECGGGHHHHTCCHHHHH
T ss_pred CCEEEEeCCCCCCCCc---hhccccCcEEEEEeCCCcch--hhhhhhhh---h--hcCCEEEEecccCCcchhhHHHHHH
Confidence 5678999998511111 11125688999999876531 11111111 1 57899999999997532 223344
Q ss_pred HHHHHc--CCeEEEeccCCCCChHHHHHHHHHHHhc
Q 030504 140 TFHRKK--NLQYYEISAKSNYNFEKPFLYLARKLAG 173 (176)
Q Consensus 140 ~~~~~~--~~~~~~~S~~~~~~v~~~~~~l~~~i~~ 173 (176)
..++.. +++++++||++|.|++++|+++.+.+.+
T Consensus 179 ~~~~~~~~~~~i~~~Sa~~g~gi~~l~~~l~~~~~~ 214 (221)
T 2wsm_A 179 ADAKLINPRAKIIEMDLKTGKGFEEWIDFLRGILNV 214 (221)
T ss_dssp HHHHHHCTTSEEEECBTTTTBTHHHHHHHHHHHHC-
T ss_pred HHHHHhCCCCeEEEeecCCCCCHHHHHHHHHHHHHH
Confidence 444443 4789999999999999999999988764
|
| >3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A* | Back alignment and structure |
|---|
Probab=99.76 E-value=1.1e-18 Score=125.88 Aligned_cols=103 Identities=8% Similarity=-0.017 Sum_probs=70.4
Q ss_pred EEEEEEEeCCCccccccccccccccccEEEEEEeCCChhhhhhHHHHHHHHhhhcCCCCEEEEEeCCCCCccccCHHH-H
Q 030504 61 KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQ-V 139 (176)
Q Consensus 61 ~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~~~~~~~~~-~ 139 (176)
++.+.++||||... .....+..+|++++|+|+......+.+.. .....|.++|+||+|+......... .
T Consensus 171 ~~~~iiiDTpGi~~---~~~~~~~~aD~vl~V~d~~~~~~~~~l~~-------~~~~~p~ivVlNK~Dl~~~~~~~~~~~ 240 (355)
T 3p32_A 171 GFDVILIETVGVGQ---SEVAVANMVDTFVLLTLARTGDQLQGIKK-------GVLELADIVVVNKADGEHHKEARLAAR 240 (355)
T ss_dssp TCCEEEEEECSCSS---HHHHHHTTCSEEEEEEESSTTCTTTTCCT-------TSGGGCSEEEEECCCGGGHHHHHHHHH
T ss_pred CCCEEEEeCCCCCc---HHHHHHHhCCEEEEEECCCCCccHHHHHH-------hHhhcCCEEEEECCCCcChhHHHHHHH
Confidence 46789999999432 22234578999999999876654433321 1124699999999999754322211 1
Q ss_pred HHHHH---c-------CCeEEEeccCCCCChHHHHHHHHHHHhc
Q 030504 140 TFHRK---K-------NLQYYEISAKSNYNFEKPFLYLARKLAG 173 (176)
Q Consensus 140 ~~~~~---~-------~~~~~~~S~~~~~~v~~~~~~l~~~i~~ 173 (176)
.+... . +.+++.+||++|.|++++++++.+.+.+
T Consensus 241 ~l~~~l~~~~~~~~~~~~~vi~iSA~~g~Gi~~L~~~i~~~~~~ 284 (355)
T 3p32_A 241 ELSAAIRLIYPREALWRPPVLTMSAVEGRGLAELWDTVERHRQV 284 (355)
T ss_dssp HHHHHHHHHSTTCCSCCCCEEEEBGGGTBSHHHHHHHHHHHHHH
T ss_pred HHHHHHhhccccccCCCCceEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 12111 1 4689999999999999999999887643
|
| >2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=6.2e-19 Score=119.72 Aligned_cols=152 Identities=14% Similarity=0.127 Sum_probs=88.5
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEe------------EEEEEec-CcE-----------------
Q 030504 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVH------------PLDFFTN-CGK----------------- 61 (176)
Q Consensus 12 ~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~-~~~----------------- 61 (176)
..++|+++|.+|||||||+++++.+.+...+.++.+.+.. ......+ +..
T Consensus 37 ~~~~i~ivG~~gvGKTtl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~ 116 (226)
T 2hf9_A 37 GVVAFDFMGAIGSGKTLLIEKLIDNLKDKYKIACIAGDVIAKFDAERMEKHGAKVVPLNTGKECHLDAHLVGHALEDLNL 116 (226)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHHHTTTCCEEEEEEETTTHHHHHHHHTTTCEEEEEECTTCSSCCHHHHHHHHTTSCG
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEECCCCCCccHHHHHhcCCcEEEecCCceEeccHHHHHHHHHHHhc
Confidence 4689999999999999999999877654444444443332 1111111 111
Q ss_pred --EEEEEEeCCCccccccccccccccccEEEEEEeCCChhhhhhHHHHHHHHhhhcCCCCEEEEEeCCCCCccc--cCHH
Q 030504 62 --IRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQ--VKAK 137 (176)
Q Consensus 62 --~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~~~~--~~~~ 137 (176)
..+.+.|++|.-.... .+-...+..+.++|......... ..... . +.|.++|+||+|+.... ...+
T Consensus 117 ~~~d~~~id~~g~i~~~~---s~~~~~~~~~~v~~~~~~~~~~~--~~~~~---~--~~~~iiv~NK~Dl~~~~~~~~~~ 186 (226)
T 2hf9_A 117 DEIDLLFIENVGNLICPA---DFDLGTHKRIVVISTTEGDDTIE--KHPGI---M--KTADLIVINKIDLADAVGADIKK 186 (226)
T ss_dssp GGCSEEEEECCSCSSGGG---GCCCSCSEEEEEEEGGGCTTTTT--TCHHH---H--TTCSEEEEECGGGHHHHTCCHHH
T ss_pred CCCCEEEEeCCCCccCcc---hhhhccCcEEEEEecCcchhhHh--hhhhH---h--hcCCEEEEeccccCchhHHHHHH
Confidence 1344445444210000 01112234456666432211110 00111 1 57889999999997542 2333
Q ss_pred HHHHHHHc--CCeEEEeccCCCCChHHHHHHHHHHHhc
Q 030504 138 QVTFHRKK--NLQYYEISAKSNYNFEKPFLYLARKLAG 173 (176)
Q Consensus 138 ~~~~~~~~--~~~~~~~S~~~~~~v~~~~~~l~~~i~~ 173 (176)
...+++.. +++++++||++|.|++++|+++.+.+.+
T Consensus 187 ~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~~ 224 (226)
T 2hf9_A 187 MENDAKRINPDAEVVLLSLKTMEGFDKVLEFIEKSVKE 224 (226)
T ss_dssp HHHHHHHHCTTSEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCeEEEEEecCCCCHHHHHHHHHHHHHh
Confidence 44555543 6799999999999999999999988764
|
| >1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A* | Back alignment and structure |
|---|
Probab=99.72 E-value=1.2e-17 Score=131.88 Aligned_cols=118 Identities=18% Similarity=0.142 Sum_probs=85.4
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHhcCC--CCCc--------------cc--cceeEEEeEEEEE------------ecCc
Q 030504 11 YPSFKLVIVGDGGTGKTTFVKRHLTGE--FEKK--------------YE--PTIGVEVHPLDFF------------TNCG 60 (176)
Q Consensus 11 ~~~~~i~i~G~~~~GKttl~~~~~~~~--~~~~--------------~~--~~~~~~~~~~~~~------------~~~~ 60 (176)
....||+|+|+.++|||||+++++... .... .. .|++.......+. .++.
T Consensus 17 ~~~rnI~IiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~D~~~~E~~rgiTI~~~~~~~~~~~~~~~~~~i~~~~~~~ 96 (842)
T 1n0u_A 17 TNVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDGN 96 (842)
T ss_dssp GGEEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCSS
T ss_pred ccccEEEEECCCCCCHHHHHHHHHHhcCCcccccCCCceeecCchhhhhcceeEeeceeEEEecccccccccccccccCC
Confidence 356799999999999999999987531 1100 00 0111111112222 1334
Q ss_pred EEEEEEEeCCCccccccccccccccccEEEEEEeCCChhhhhhHHHHHHHHhhhcCCCCEEEEEeCCCCCc
Q 030504 61 KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKN 131 (176)
Q Consensus 61 ~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~~ 131 (176)
.+.+.+|||||+.+|...+..+++.+|++|+|+|++++.+++....|.... . .+.|+++++||+|+..
T Consensus 97 ~~~i~liDTPG~~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~-~--~~~p~ilviNK~D~~~ 164 (842)
T 1n0u_A 97 SFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTETVLRQAL-G--ERIKPVVVINKVDRAL 164 (842)
T ss_dssp EEEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHHHHHHHHH-H--TTCEEEEEEECHHHHH
T ss_pred CceEEEEECcCchhhHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHH-H--cCCCeEEEEECCCcch
Confidence 789999999999999999999999999999999999988777766554333 2 3889999999999863
|
| >1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2 | Back alignment and structure |
|---|
Probab=99.72 E-value=1.9e-16 Score=113.54 Aligned_cols=83 Identities=20% Similarity=0.061 Sum_probs=54.0
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCCCCCcccc--ceeEEEeEEEEEecCc---------------EEEEEEEeCCCcccc
Q 030504 13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEP--TIGVEVHPLDFFTNCG---------------KIRFYCWDTAGQEKF 75 (176)
Q Consensus 13 ~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~---------------~~~~~~~D~~g~~~~ 75 (176)
.++|+++|.+|||||||+|++..........| |.+... ..+.+++. ...+.+|||||..++
T Consensus 2 ~~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~--g~v~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~ 79 (363)
T 1jal_A 2 GFKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNT--GVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAG 79 (363)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCS--SEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTT
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceE--EEEecCCcccceeeeeecccceeeeEEEEEECCCCccc
Confidence 37899999999999999999887653221111 221111 12233322 157899999998765
Q ss_pred c----ccc---ccccccccEEEEEEeCCC
Q 030504 76 G----GLR---DGYYIHGQCAIIMFDVTA 97 (176)
Q Consensus 76 ~----~~~---~~~~~~~~~~i~v~d~~~ 97 (176)
. .+. ..+++++|++++|+|+++
T Consensus 80 a~~~~gl~~~fl~~ir~ad~il~VvD~~~ 108 (363)
T 1jal_A 80 ASKGEGLGNKFLANIRETDAIGHVVRCFE 108 (363)
T ss_dssp HHHHGGGTCCHHHHHHTCSEEEEEEECSC
T ss_pred ccccchHHHHHHHHHHhcCeEEEEEecCC
Confidence 3 222 234789999999999986
|
| >3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis} | Back alignment and structure |
|---|
Probab=99.70 E-value=4.5e-18 Score=130.80 Aligned_cols=116 Identities=18% Similarity=0.199 Sum_probs=87.6
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhc--CCCCCc-----------c---ccceeEEEeEEEEEecCcEEEEEEEeCCCccccc
Q 030504 13 SFKLVIVGDGGTGKTTFVKRHLT--GEFEKK-----------Y---EPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFG 76 (176)
Q Consensus 13 ~~~i~i~G~~~~GKttl~~~~~~--~~~~~~-----------~---~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~ 76 (176)
..||+|+|+.++|||||+.+++. |..... + ....|++.......+..+.+.++++|||||..|.
T Consensus 2 IRNi~IiaHvD~GKTTL~e~LL~~~G~i~~~g~v~~g~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPGH~DF~ 81 (638)
T 3j25_A 2 IINIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQWENTKVNIIDTPGHMDFL 81 (638)
T ss_dssp CCCCEEECCSTTSSHHHHHHHHHHHTCCSSCSSCCCSCCSTTCSTTHHHHSSCSSCCCCCCBCSSCBCCCEECCCSSSTH
T ss_pred eeEEEEEcCCCCCHHHHHHHHHHHcCCCccccccccCCcccCCcHHHHhCCCcEEeeeEEEEECCEEEEEEECCCcHHHH
Confidence 36899999999999999999863 221110 0 1112555555555667777889999999999999
Q ss_pred cccccccccccEEEEEEeCCChhhhhhHHHHHHHHhhhcCCCCEEEEEeCCCCCc
Q 030504 77 GLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKN 131 (176)
Q Consensus 77 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~~ 131 (176)
......++-+|++++|+|+..+-..+....|. .+.+. +.|.++++||.|...
T Consensus 82 ~Ev~raL~~~DgavlVVDa~~GV~~qT~~v~~-~a~~~--~lp~i~~INKmDr~~ 133 (638)
T 3j25_A 82 AEVYRSLSVLDGAILLISAKDGVQAQTRILFH-ALRKM--GIPTIFFINKIDQNG 133 (638)
T ss_dssp HHHHHHHTTCSEEECCEESSCTTCSHHHHHHH-HHHHH--TCSCEECCEECCSSS
T ss_pred HHHHHHHHHhCEEEEEEeCCCCCcHHHHHHHH-HHHHc--CCCeEEEEecccccc
Confidence 98889999999999999999876656554443 44444 889999999999765
|
| >2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.69 E-value=1.7e-17 Score=119.24 Aligned_cols=101 Identities=9% Similarity=-0.010 Sum_probs=62.1
Q ss_pred EEEEEEEeCCCccccccccccccccccEEEEEEeCCChhhhhhHHHHHHHHhhhcCCCCEEEEEeCCCCCcccc-CHHHH
Q 030504 61 KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQV-KAKQV 139 (176)
Q Consensus 61 ~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~~~~~-~~~~~ 139 (176)
++.+.++||+|.... .......+|++++|+|++.+...+.+.. .+ -..|.++|+||+|+.+... .....
T Consensus 166 ~~~~iliDT~Gi~~~---~~~l~~~~d~vl~V~d~~~~~~~~~i~~---~i----l~~~~ivVlNK~Dl~~~~~~~~~~~ 235 (349)
T 2www_A 166 GYDIILIETVGVGQS---EFAVADMVDMFVLLLPPAGGDELQGIKR---GI----IEMADLVAVTKSDGDLIVPARRIQA 235 (349)
T ss_dssp TCSEEEEECCCC--C---HHHHHTTCSEEEEEECCC-------------------CCSCSEEEECCCSGGGHHHHHHHHH
T ss_pred CCCEEEEECCCcchh---hhhHHhhCCEEEEEEcCCcchhHHHhHH---HH----HhcCCEEEEeeecCCCchhHHHHHH
Confidence 456889999995321 2334568999999999987643222211 11 2568899999999964321 11111
Q ss_pred HHHH----------HcCCeEEEeccCCCCChHHHHHHHHHHH
Q 030504 140 TFHR----------KKNLQYYEISAKSNYNFEKPFLYLARKL 171 (176)
Q Consensus 140 ~~~~----------~~~~~~~~~S~~~~~~v~~~~~~l~~~i 171 (176)
.+.. ....+++.+|++++.|+++++++|.+.+
T Consensus 236 ~l~~~l~~~~~~a~~~~~~vi~iSA~~g~Gi~~L~~~I~~~~ 277 (349)
T 2www_A 236 EYVSALKLLRKRSQVWKPKVIRISARSGEGISEMWDKMKDFQ 277 (349)
T ss_dssp HHHHHHTTCC-----CCCEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHhcCccccCCCceEEEEecCCCCCHHHHHHHHHHHH
Confidence 1211 1145789999999999999999998765
|
| >2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.69 E-value=3.9e-17 Score=123.57 Aligned_cols=118 Identities=19% Similarity=0.129 Sum_probs=78.1
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHhcCCCC---CccccceeEEEeEEEEE-------------------------------
Q 030504 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFE---KKYEPTIGVEVHPLDFF------------------------------- 56 (176)
Q Consensus 11 ~~~~~i~i~G~~~~GKttl~~~~~~~~~~---~~~~~~~~~~~~~~~~~------------------------------- 56 (176)
....+|+|+|.+|+|||||+|++++..+. ....++. +.......
T Consensus 63 ~~~~~V~vvG~~n~GKSTLIN~Llg~~~~~~~vs~~p~T--~~~~~i~~~~~~~i~~g~~l~~~~~~~~~~L~~~g~~~~ 140 (550)
T 2qpt_A 63 DGKPMVLVAGQYSTGKTSFIQYLLEQEVPGSRVGPEPTT--DCFVAVMHGETEGTVPGNALVVDPEKPFRKLNPFGNTFL 140 (550)
T ss_dssp SSCCEEEEEEBTTSCHHHHHHHHHTSCCSSCCCCSSCCC--CSEEEEECCSSSEEECCC------------------CCC
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCccccCccCCCCcc--ceEEEEEECCcccccCCceeeecCcccHHHHhhhccccc
Confidence 35689999999999999999998877652 1112211 11000000
Q ss_pred -------ecCc-EEEEEEEeCCCccc-----------cccccccccccccEEEEEEeCCChhhhhhHHHHHHHHhhhcCC
Q 030504 57 -------TNCG-KIRFYCWDTAGQEK-----------FGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCEN 117 (176)
Q Consensus 57 -------~~~~-~~~~~~~D~~g~~~-----------~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~ 117 (176)
.... ...+.+|||||... +......++..+|++++|+|+++.........++..+... +
T Consensus 141 ~~~~~~~~~~~ll~~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~--~ 218 (550)
T 2qpt_A 141 NRFMCAQLPNQVLESISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHKLEISDEFSEAIGALRGH--E 218 (550)
T ss_dssp TTEEEEECCCHHHHHCEEEECCCBCC-------CCSCHHHHHHHHHHHCSEEEEEEETTSCCCCHHHHHHHHHTTTC--G
T ss_pred ccceEEeccccccCCEEEEECcCCCCcchhHHHHHhhHHHHHHHHHHhCCEEEEEEeCCcCCCCHHHHHHHHHHHhc--C
Confidence 0000 02588999999864 2234455678899999999998754444555565555443 6
Q ss_pred CCEEEEEeCCCCCcc
Q 030504 118 IPIVLCGNKVDVKNR 132 (176)
Q Consensus 118 ~p~liv~nK~Dl~~~ 132 (176)
.|+++|+||+|+...
T Consensus 219 ~pvilVlNK~Dl~~~ 233 (550)
T 2qpt_A 219 DKIRVVLNKADMVET 233 (550)
T ss_dssp GGEEEEEECGGGSCH
T ss_pred CCEEEEEECCCccCH
Confidence 899999999999754
|
| >1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A* | Back alignment and structure |
|---|
Probab=99.68 E-value=1.3e-16 Score=110.60 Aligned_cols=113 Identities=13% Similarity=-0.001 Sum_probs=70.2
Q ss_pred EEEEEEeCCCccccccccc------cccccccEEEEEEeCCChhhhhhHHHHHHHH-h-hhcCCCCEEEEEeCCCCCccc
Q 030504 62 IRFYCWDTAGQEKFGGLRD------GYYIHGQCAIIMFDVTARLTYKNVPTWHRDL-C-RVCENIPIVLCGNKVDVKNRQ 133 (176)
Q Consensus 62 ~~~~~~D~~g~~~~~~~~~------~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~-~-~~~~~~p~liv~nK~Dl~~~~ 133 (176)
+.+.+|||||......... ..+.. +++++++|+................ . ....+.|+++|+||+|+....
T Consensus 109 ~d~iiiDtpG~~~~~~~~~l~~~~~~~~~~-~~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~~~~p~~iv~NK~D~~~~~ 187 (262)
T 1yrb_A 109 NDYVLIDTPGQMETFLFHEFGVRLMENLPY-PLVVYISDPEILKKPNDYCFVRFFALLIDLRLGATTIPALNKVDLLSEE 187 (262)
T ss_dssp CSEEEEECCSSHHHHHHSHHHHHHHHTSSS-CEEEEEECGGGCCSHHHHHHHHHHHHHHHHHHTSCEEEEECCGGGCCHH
T ss_pred CCEEEEeCCCccchhhhhhhHHHHHHHHhh-ceEEeccchhhhcCHHHHHHHHHHHHHHhcccCCCeEEEEecccccccc
Confidence 5789999999875432211 13355 8888999876433222221111111 1 111378999999999987543
Q ss_pred cCHHHHH----------------------------HHHHcC--CeEEEeccCCCCChHHHHHHHHHHHhcCC
Q 030504 134 VKAKQVT----------------------------FHRKKN--LQYYEISAKSNYNFEKPFLYLARKLAGST 175 (176)
Q Consensus 134 ~~~~~~~----------------------------~~~~~~--~~~~~~S~~~~~~v~~~~~~l~~~i~~~~ 175 (176)
...+..+ +++..+ ++++++||+++.|++++++++.+.+...+
T Consensus 188 ~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SA~~~~gi~~l~~~i~~~~~~~~ 259 (262)
T 1yrb_A 188 EKERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREGFEDLETLAYEHYCTCG 259 (262)
T ss_dssp HHHHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSCCCCCEECCTTTCTTHHHHHHHHHHHHHHHC
T ss_pred cHHHHHHHHhChHHHHHHHhccccccchhHhHHHHHHHHhcCcccceEEEecCcccHHHHHHHHHHHhcccc
Confidence 1111111 123333 48999999999999999999998876554
|
| >2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10 | Back alignment and structure |
|---|
Probab=99.66 E-value=4.3e-17 Score=116.99 Aligned_cols=102 Identities=11% Similarity=-0.053 Sum_probs=65.5
Q ss_pred EEEEEEEeCCCccccccccccccccccEEEEEEeCCChhhhhhHHHHHHHHhhhcCCCCEEEEEeCCCCCccccCH----
Q 030504 61 KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKA---- 136 (176)
Q Consensus 61 ~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~~~~~~~---- 136 (176)
++.+.++||||...... .....+|++++|+|++.....+.+... . .+.|.++|+||+|+.+.....
T Consensus 148 ~~~i~liDTpG~~~~~~---~~~~~aD~vl~Vvd~~~~~~~~~l~~~--~-----~~~p~ivv~NK~Dl~~~~~~~~~~~ 217 (341)
T 2p67_A 148 GYDVVIVETVGVGQSET---EVARMVDCFISLQIAGGGDDLQGIKKG--L-----MEVADLIVINKDDGDNHTNVAIARH 217 (341)
T ss_dssp TCSEEEEEEECCTTHHH---HHHTTCSEEEEEECC------CCCCHH--H-----HHHCSEEEECCCCTTCHHHHHHHHH
T ss_pred CCCEEEEeCCCccchHH---HHHHhCCEEEEEEeCCccHHHHHHHHh--h-----hcccCEEEEECCCCCChHHHHHHHH
Confidence 46789999999654332 235789999999999765433322110 0 145889999999997542211
Q ss_pred HHHHHHHHc-------CCeEEEeccCCCCChHHHHHHHHHHHh
Q 030504 137 KQVTFHRKK-------NLQYYEISAKSNYNFEKPFLYLARKLA 172 (176)
Q Consensus 137 ~~~~~~~~~-------~~~~~~~S~~~~~~v~~~~~~l~~~i~ 172 (176)
+........ ..+++++||++|.|+++++++|.+.+.
T Consensus 218 ~l~~~l~~~~~~~~~~~~~vi~iSA~~g~gi~~L~~~l~~~~~ 260 (341)
T 2p67_A 218 MYESALHILRRKYDEWQPRVLTCSALEKRGIDEIWHAIIDFKT 260 (341)
T ss_dssp HHHHHHHHSCCSBTTBCCEEEECBGGGTBSHHHHHHHHHHHHH
T ss_pred HHHHHHHhccccccCCCCcEEEeeCCCCCCHHHHHHHHHHHHH
Confidence 111111121 357899999999999999999988654
|
| >4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=99.66 E-value=3e-15 Score=116.58 Aligned_cols=118 Identities=21% Similarity=0.251 Sum_probs=81.2
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHhc--------CCCCCc--------cccceeEEEeEEEEEe--c-----CcEEEEEEE
Q 030504 11 YPSFKLVIVGDGGTGKTTFVKRHLT--------GEFEKK--------YEPTIGVEVHPLDFFT--N-----CGKIRFYCW 67 (176)
Q Consensus 11 ~~~~~i~i~G~~~~GKttl~~~~~~--------~~~~~~--------~~~~~~~~~~~~~~~~--~-----~~~~~~~~~ 67 (176)
.+..||+|+|+.++|||||+.+++. |+.... .....|++.....+.. . ...+.++++
T Consensus 11 ~~IRNi~IiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~~~~~~D~~~~E~eRGITI~s~~~s~~~~~~~~~~~~~~iNlI 90 (709)
T 4fn5_A 11 NRYRNIGICAHVDAGKTTTTERVLFYTGVNHKLGEVHDGAATTDWMVQEQERGITITSAAVTTFWKGSRGQYDNYRVNVI 90 (709)
T ss_dssp GGEEEEEEECCSSSCHHHHHHHHHHHHHHHHHC------------------------CCEEEEEECCTTSCSCCEEEEEE
T ss_pred HHCeEEEEEcCCCCCHHHHHHHHHHhcCCCCcCceecCCCccCCChHHHHHcCCeEEeeeEEEEeccCcCCCCCEEEEEE
Confidence 3457899999999999999999863 111100 0112233443333322 1 236889999
Q ss_pred eCCCccccccccccccccccEEEEEEeCCChhhhhhHHHHHHHHhhhcCCCCEEEEEeCCCCCc
Q 030504 68 DTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKN 131 (176)
Q Consensus 68 D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~~ 131 (176)
|||||..|.......++-+|++|+|+|+..+-..+....|... .+. +.|.++++||.|...
T Consensus 91 DTPGHvDF~~Ev~~aLr~~DgavlvVDaveGV~~qT~~v~~~a-~~~--~lp~i~~iNKiDr~~ 151 (709)
T 4fn5_A 91 DTPGHVDFTIEVERSLRVLDGAVVVFCGTSGVEPQSETVWRQA-NKY--GVPRIVYVNKMDRQG 151 (709)
T ss_dssp CCCSCTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHH-HHH--TCCEEEEEECSSSTT
T ss_pred eCCCCcccHHHHHHHHHHhCeEEEEEECCCCCchhHHHHHHHH-HHc--CCCeEEEEccccccC
Confidence 9999999999889999999999999999987665555555443 343 899999999999754
|
| >2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A | Back alignment and structure |
|---|
Probab=99.64 E-value=3.6e-15 Score=107.51 Aligned_cols=78 Identities=17% Similarity=0.033 Sum_probs=53.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCC-C-----ccccceeEEEeEEEEEecC-------------------cEEEEEEEe
Q 030504 14 FKLVIVGDGGTGKTTFVKRHLTGEFE-K-----KYEPTIGVEVHPLDFFTNC-------------------GKIRFYCWD 68 (176)
Q Consensus 14 ~~i~i~G~~~~GKttl~~~~~~~~~~-~-----~~~~~~~~~~~~~~~~~~~-------------------~~~~~~~~D 68 (176)
++|+++|.+|+|||||++++...... . ...++.|.. .+++ ....+.+||
T Consensus 2 ~~v~IVG~pnvGKSTL~n~L~~~~~~v~~~p~~Ti~pn~g~~------~v~~~~l~~~~~~~~~~~~~~~~~~~~i~lvD 75 (368)
T 2dby_A 2 LAVGIVGLPNVGKSTLFNALTRANALAANYPFATIDKNVGVV------PLEDERLYALQRTFAKGERVPPVVPTHVEFVD 75 (368)
T ss_dssp CSEEEECCSSSSHHHHHHHHHHHHTTCSSCCGGGGSTTEEEE------ECCCHHHHHHHHHHCBTTBCCCEECCEEEEEE
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeccceeeE------ecChHHHHHHHHHhcccccccccCCceEEEEE
Confidence 68999999999999999998764321 1 223444422 1111 235789999
Q ss_pred CCCcccccc----c---cccccccccEEEEEEeCCC
Q 030504 69 TAGQEKFGG----L---RDGYYIHGQCAIIMFDVTA 97 (176)
Q Consensus 69 ~~g~~~~~~----~---~~~~~~~~~~~i~v~d~~~ 97 (176)
|||...... + ....++++|++++|+|+++
T Consensus 76 tpGl~~~a~~~~~lg~~fl~~ir~ad~ii~VvD~~~ 111 (368)
T 2dby_A 76 IAGLVKGAHKGEGLGNQFLAHIREVAAIAHVLRCFP 111 (368)
T ss_dssp CCSCCCCCCSSSCTTHHHHHHHHTCSEEEEEEECCC
T ss_pred CCCccccccccchHHHHHHHHHHhCCEEEEEEECCC
Confidence 999876532 2 2234789999999999985
|
| >3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.63 E-value=3.1e-16 Score=103.14 Aligned_cols=105 Identities=6% Similarity=-0.100 Sum_probs=71.3
Q ss_pred CCCccccccccccccccccEEEEEEeCCChhhhhhHHHHH---HHH-hhh--cCCCCEEEEEeCC-CCCccccCHHHHHH
Q 030504 69 TAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWH---RDL-CRV--CENIPIVLCGNKV-DVKNRQVKAKQVTF 141 (176)
Q Consensus 69 ~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~---~~~-~~~--~~~~p~liv~nK~-Dl~~~~~~~~~~~~ 141 (176)
.+|++..+.+|+.|+.++|++|||+|++|...++ ....+ ..+ .+. ..+.|++|++||. |++......+..+.
T Consensus 109 ~GGQ~klRplWr~Yy~~TdglIfVVDSsD~~R~e-ak~EL~eL~~mL~ee~~L~gapLLVlANKqqDlp~Ams~~EI~e~ 187 (227)
T 3l82_B 109 QGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKRMPCFYLAHE 187 (227)
T ss_dssp --------CCHHHHHHHCSEEEEEEECBTTCCCC-HHHHHHHHHHHSCTTSSCSCSCEEEEEEESSTTSCBCCHHHHHHH
T ss_pred cCcHHHHHHHHHHHhcCCCEEEEEeccccHhHHH-HHHHHHHHHHHhcchhhhCCCeEEEEeCCCcCccCCCCHHHHHHH
Confidence 3488999999999999999999999999886544 44333 222 222 2578999999995 78654433332211
Q ss_pred H----HHcCCeEEEeccCCCCChHHHHHHHHHHHhcC
Q 030504 142 H----RKKNLQYYEISAKSNYNFEKPFLYLARKLAGS 174 (176)
Q Consensus 142 ~----~~~~~~~~~~S~~~~~~v~~~~~~l~~~i~~~ 174 (176)
. ....|.+..|||++|+|+.|.++||++.+..+
T Consensus 188 L~L~~l~R~W~Iq~csA~TGeGL~EGLdWL~~~l~~k 224 (227)
T 3l82_B 188 LHLNLLNHPWLVQDTEAETLTGFLNGIEWILEEVESK 224 (227)
T ss_dssp TTGGGGCSCEEEEEEETTTCTTHHHHHHHHTTTTTTC
T ss_pred cCCcCCCCCEEEEEeECCCCcCHHHHHHHHHHHHHhh
Confidence 1 12568899999999999999999999887654
|
| >2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.60 E-value=6.4e-15 Score=103.98 Aligned_cols=96 Identities=16% Similarity=0.083 Sum_probs=80.1
Q ss_pred ccccccccccccccccEEEEEEeCCChh-hhhhHHHHHHHHhhhcCCCCEEEEEeCCCCCcccc---CHHHHHHHHHcCC
Q 030504 72 QEKFGGLRDGYYIHGQCAIIMFDVTARL-TYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQV---KAKQVTFHRKKNL 147 (176)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~~~~~---~~~~~~~~~~~~~ 147 (176)
++++..+.+.++.++|++++|+|++++. ++..+..|+..+.. .+.|+++|+||+|+.+... ..+..++++..++
T Consensus 66 ~er~~~l~r~~~~naD~vliV~d~~~p~~s~~~l~~~l~~~~~--~~~~~ilV~NK~DL~~~~~v~~~~~~~~~~~~~g~ 143 (302)
T 2yv5_A 66 EERKNLLIRPKVANVDRVIIVETLKMPEFNNYLLDNMLVVYEY--FKVEPVIVFNKIDLLNEEEKKELERWISIYRDAGY 143 (302)
T ss_dssp CCCSCEEETTEEESCCEEEEEECSTTTTCCHHHHHHHHHHHHH--TTCEEEEEECCGGGCCHHHHHHHHHHHHHHHHTTC
T ss_pred CChHHHHhHHHHHhcCEEEEEEECCCCCCCHHHHHHHHHHHHh--CCCCEEEEEEcccCCCccccHHHHHHHHHHHHCCC
Confidence 6788888889999999999999999886 88888888887665 4899999999999976431 2344566777889
Q ss_pred eEEEeccCCCCChHHHHHHHHH
Q 030504 148 QYYEISAKSNYNFEKPFLYLAR 169 (176)
Q Consensus 148 ~~~~~S~~~~~~v~~~~~~l~~ 169 (176)
+++++||++|.|+++++..+..
T Consensus 144 ~~~~~SA~~g~gi~~L~~~l~G 165 (302)
T 2yv5_A 144 DVLKVSAKTGEGIDELVDYLEG 165 (302)
T ss_dssp EEEECCTTTCTTHHHHHHHTTT
T ss_pred eEEEEECCCCCCHHHHHhhccC
Confidence 9999999999999999987653
|
| >3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A | Back alignment and structure |
|---|
Probab=99.57 E-value=8.8e-15 Score=113.46 Aligned_cols=105 Identities=11% Similarity=0.047 Sum_probs=68.4
Q ss_pred EEEEEeCCCcccc-------------cccccccc-ccccEEEEEEeCCChhhhhhHHHHHHHHhhhcCCCCEEEEEeCCC
Q 030504 63 RFYCWDTAGQEKF-------------GGLRDGYY-IHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVD 128 (176)
Q Consensus 63 ~~~~~D~~g~~~~-------------~~~~~~~~-~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~liv~nK~D 128 (176)
.+.++||||.... ......++ ..+|++++|+|++..........++..+... +.|+++|+||+|
T Consensus 151 qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~~~aDlIL~VVDAs~~~~~~d~l~ll~~L~~~--g~pvIlVlNKiD 228 (772)
T 3zvr_A 151 NLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKIAKEVDPQ--GQRTIGVITKLD 228 (772)
T ss_dssp SEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHTSTTEEEEEEEETTSCSSSCHHHHHHHHHCTT--CSSEEEEEECTT
T ss_pred ceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHhcCCcEEEEEEcCCCCcchhHHHHHHHHHHhc--CCCEEEEEeCcc
Confidence 5789999995431 11222233 4689999999998764444433444455443 789999999999
Q ss_pred CCccccCHHHHHHHHH----cC-CeEEEeccCCCCChHHHHHHHHH
Q 030504 129 VKNRQVKAKQVTFHRK----KN-LQYYEISAKSNYNFEKPFLYLAR 169 (176)
Q Consensus 129 l~~~~~~~~~~~~~~~----~~-~~~~~~S~~~~~~v~~~~~~l~~ 169 (176)
+.+...........+. .+ ..++.+||++|.|++++++.+.+
T Consensus 229 lv~~~~~~~~il~~~~~~l~lg~~~VV~iSA~~G~GvdeL~eaI~~ 274 (772)
T 3zvr_A 229 LMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAA 274 (772)
T ss_dssp SSCTTCCSHHHHTTCSSCCSSCEEECCCCCCEESSSSEEHHHHHHH
T ss_pred cCCcchhhHHHHHHHhhhhhccCCceEEecccccccchhHHHHHHH
Confidence 9754332111111111 12 35678999999999999998886
|
| >3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.55 E-value=8.5e-15 Score=100.85 Aligned_cols=105 Identities=6% Similarity=-0.119 Sum_probs=76.0
Q ss_pred CCCccccccccccccccccEEEEEEeCCChhhhhhHHHHH----HHHhhh--cCCCCEEEEEeC-CCCCccccCHHHHHH
Q 030504 69 TAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWH----RDLCRV--CENIPIVLCGNK-VDVKNRQVKAKQVTF 141 (176)
Q Consensus 69 ~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~----~~~~~~--~~~~p~liv~nK-~Dl~~~~~~~~~~~~ 141 (176)
.+|++..+.+|+.|+.++|++|||+|++|.+.++ ....+ ..+.+. ..+.|++|++|| .|++......+..+.
T Consensus 194 ~GGQ~~lRplWr~Yy~~tdglIfVVDSsDreRle-ak~EL~eL~~mL~e~~~l~~apLLVfANKkQDlp~Ams~~EI~e~ 272 (312)
T 3l2o_B 194 QGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKRMPCFYLAHE 272 (312)
T ss_dssp ---CCCCCHHHHHHHHHCSEEEECCBCBTTCCCC-HHHHHHHHHHHHCHHHHCTTCCEEEEEEESSTTSCBCCHHHHHHH
T ss_pred CCCHHHHHHHHHHHhcCCCEEEEEecCCcHhHHH-HHHHHHHHHHHhcchhhcCCCeEEEEeCCcccccCCCCHHHHHHH
Confidence 4688999999999999999999999999987654 33222 233232 368999999996 688765443332211
Q ss_pred H----HHcCCeEEEeccCCCCChHHHHHHHHHHHhcC
Q 030504 142 H----RKKNLQYYEISAKSNYNFEKPFLYLARKLAGS 174 (176)
Q Consensus 142 ~----~~~~~~~~~~S~~~~~~v~~~~~~l~~~i~~~ 174 (176)
. ....+.+..|||.+|+|+.|.++||++.+..+
T Consensus 273 L~L~~l~r~W~Iq~csA~tGeGL~EGldWL~~~l~~k 309 (312)
T 3l2o_B 273 LHLNLLNHPWLVQDTEAETLTGFLNGIEWILEEVESK 309 (312)
T ss_dssp TTGGGGCSCEEEEEEETTTCTTHHHHHHHHHHHSCC-
T ss_pred cCCccCCCcEEEEecccCCCcCHHHHHHHHHHHHHhh
Confidence 1 12467899999999999999999999988654
|
| >4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.53 E-value=8.5e-14 Score=100.41 Aligned_cols=118 Identities=13% Similarity=-0.021 Sum_probs=76.2
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccc-------cccccc
Q 030504 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGL-------RDGYYI 84 (176)
Q Consensus 12 ~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~-------~~~~~~ 84 (176)
...+|+++|.|+||||||+|++.+.+... ....++|.......+...+..+.+.||||.-..... ....++
T Consensus 71 g~a~V~ivG~PNvGKSTL~n~Lt~~~~~v--~~~pftT~~~~~g~~~~~~~~i~l~D~pGl~~~a~~~~~~g~~~l~~i~ 148 (376)
T 4a9a_A 71 GVASVGFVGFPSVGKSTLLSKLTGTESEA--AEYEFTTLVTVPGVIRYKGAKIQMLDLPGIIDGAKDGRGRGKQVIAVAR 148 (376)
T ss_dssp SSEEEEEECCCCHHHHHHHHHHHSBCCCG--GGTCSSCCCEEEEEEEETTEEEEEEECGGGCCC-----CHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHhCCCCcc--cCCCCceeeeeeEEEEeCCcEEEEEeCCCccCCchhhhHHHHHHHHHHH
Confidence 35689999999999999999977644322 223334444444333335567889999996432211 223467
Q ss_pred cccEEEEEEeCCChhh-hhhHHHHHHHHhhhcCCCCEEEEEeCCCCCc
Q 030504 85 HGQCAIIMFDVTARLT-YKNVPTWHRDLCRVCENIPIVLCGNKVDVKN 131 (176)
Q Consensus 85 ~~~~~i~v~d~~~~~s-~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~~ 131 (176)
.+|++++|+|++++.. .+.+...+..........|.+++.||.|...
T Consensus 149 ~ad~il~vvD~~~p~~~~~~i~~EL~~~~~~l~~k~~~i~~nK~d~~g 196 (376)
T 4a9a_A 149 TCNLLFIILDVNKPLHHKQIIEKELEGVGIRLNKTPPDILIKKKEKGG 196 (376)
T ss_dssp HCSEEEEEEETTSHHHHHHHHHHHHHHTTEEETCCCCCEEEEECSSSC
T ss_pred hcCccccccccCccHHHHHHHHHHHHHhhHhhccCChhhhhhHhhhhh
Confidence 8999999999998743 2333333333333335778889999999643
|
| >2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A* | Back alignment and structure |
|---|
Probab=99.45 E-value=4.9e-14 Score=100.87 Aligned_cols=102 Identities=9% Similarity=0.047 Sum_probs=61.5
Q ss_pred EEEEEEEeCCCccccccccccccccccEEEEEEeCCChhhhhhHHHHHHHHhhhcCCCCEEEEEeCCCCCc-cccC-HHH
Q 030504 61 KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKN-RQVK-AKQ 138 (176)
Q Consensus 61 ~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~~-~~~~-~~~ 138 (176)
++.+.++||+|..... ......+|.+++|+|+......+.+... +. ..|.++++||+|+.. .... ...
T Consensus 147 ~~~~iliDT~Gi~~~~---~~v~~~~d~vl~v~d~~~~~~~~~i~~~---i~----~~~~ivvlNK~Dl~~~~~~s~~~~ 216 (337)
T 2qm8_A 147 GFDVILVETVGVGQSE---TAVADLTDFFLVLMLPGAGDELQGIKKG---IF----ELADMIAVNKADDGDGERRASAAA 216 (337)
T ss_dssp TCCEEEEEECSSSSCH---HHHHTTSSEEEEEECSCC------CCTT---HH----HHCSEEEEECCSTTCCHHHHHHHH
T ss_pred CCCEEEEECCCCCcch---hhHHhhCCEEEEEEcCCCcccHHHHHHH---Hh----ccccEEEEEchhccCchhHHHHHH
Confidence 5678999999965321 1234688999999998654322111111 11 235677789999753 2111 111
Q ss_pred HHHHHH----c------CCeEEEeccCCCCChHHHHHHHHHHHh
Q 030504 139 VTFHRK----K------NLQYYEISAKSNYNFEKPFLYLARKLA 172 (176)
Q Consensus 139 ~~~~~~----~------~~~~~~~S~~~~~~v~~~~~~l~~~i~ 172 (176)
..+... . ..+++.+|++++.|++++++.|.+...
T Consensus 217 ~~l~~a~~l~~~~~~~~~~~vl~~Sal~g~gi~~L~~~I~~~~~ 260 (337)
T 2qm8_A 217 SEYRAALHILTPPSATWTPPVVTISGLHGKGLDSLWSRIEDHRS 260 (337)
T ss_dssp HHHHHHHTTBCCSBTTBCCCEEEEBTTTTBSHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccccccCCCCCEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 122111 1 357899999999999999999887643
|
| >2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.42 E-value=1.5e-13 Score=99.60 Aligned_cols=88 Identities=16% Similarity=0.005 Sum_probs=49.9
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCc---------------EEEEEEEeCCCcccc
Q 030504 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG---------------KIRFYCWDTAGQEKF 75 (176)
Q Consensus 11 ~~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~D~~g~~~~ 75 (176)
....+|+++|.+|+|||||+|++.+........|..+.+.....+.+++. ...+.+|||||....
T Consensus 20 ~~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~~r~~~l~~~~~p~~~~~~~i~lvDtpGl~~~ 99 (396)
T 2ohf_A 20 GTSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDERFDFLCQYHKPASKIPAFLNVVDIAGLVKG 99 (396)
T ss_dssp SSCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCCHHHHHHHHHHCCSEEECCEEEEEECCC----
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECCccceeeccccCcccccccccEEEECCCcccc
Confidence 35689999999999999999998766542222222222222233333321 235899999998765
Q ss_pred cc-------ccccccccccEEEEEEeCCCh
Q 030504 76 GG-------LRDGYYIHGQCAIIMFDVTAR 98 (176)
Q Consensus 76 ~~-------~~~~~~~~~~~~i~v~d~~~~ 98 (176)
.+ .+..+++++|++++|+|+.+.
T Consensus 100 as~~~glg~~~l~~ir~aD~Il~VvD~~~~ 129 (396)
T 2ohf_A 100 AHNGQGLGNAFLSHISACDGIFHLTRAFED 129 (396)
T ss_dssp -------CCHHHHHHHTSSSEEEEEEC---
T ss_pred cchhhHHHHHHHHHHHhcCeEEEEEecCCC
Confidence 43 345667899999999999854
|
| >1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2 | Back alignment and structure |
|---|
Probab=99.35 E-value=3.5e-11 Score=87.35 Aligned_cols=86 Identities=16% Similarity=0.083 Sum_probs=55.0
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHhcCCC-CCccccceeEEEeEEEEEecCc---------------EEEEEEEeCCCcccc
Q 030504 12 PSFKLVIVGDGGTGKTTFVKRHLTGEF-EKKYEPTIGVEVHPLDFFTNCG---------------KIRFYCWDTAGQEKF 75 (176)
Q Consensus 12 ~~~~i~i~G~~~~GKttl~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~D~~g~~~~ 75 (176)
+..+++++|++|||||||+|.+.+... .....|....+.....+.+.+. ...+.+||+||....
T Consensus 19 ~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl~~~ 98 (392)
T 1ni3_A 19 NNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLTKG 98 (392)
T ss_dssp SCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGCCC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEeccccccC
Confidence 467999999999999999999876543 2222222212222223333321 135889999995432
Q ss_pred -------ccccccccccccEEEEEEeCCC
Q 030504 76 -------GGLRDGYYIHGQCAIIMFDVTA 97 (176)
Q Consensus 76 -------~~~~~~~~~~~~~~i~v~d~~~ 97 (176)
.......++.+|++++|+|+.+
T Consensus 99 ~s~~e~L~~~fl~~ir~~d~il~Vvd~~~ 127 (392)
T 1ni3_A 99 ASTGVGLGNAFLSHVRAVDAIYQVVRAFD 127 (392)
T ss_dssp CCSSSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 2233445678999999999864
|
| >3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str} | Back alignment and structure |
|---|
Probab=99.25 E-value=1.1e-11 Score=89.80 Aligned_cols=96 Identities=20% Similarity=0.209 Sum_probs=73.2
Q ss_pred CccccccccccccccccEEEEEEeCCChhhhhhHHHHHHHHhhhcCCCCEEEEEeCCCCCccccCH-HH----HHHHHHc
Q 030504 71 GQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKA-KQ----VTFHRKK 145 (176)
Q Consensus 71 g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~~~~~~~-~~----~~~~~~~ 145 (176)
..+.|......+++.++++++|+|++++. ..|...+.+...+.|+++|+||+|+.+..... .. ...++..
T Consensus 55 ~~e~f~~~l~~i~~~~~~il~VvD~~d~~-----~~~~~~l~~~~~~~p~ilV~NK~DL~~~~~~~~~~~~~l~~~~~~~ 129 (368)
T 3h2y_A 55 TDDDFLRILNGIGKSDALVVKIVDIFDFN-----GSWLPGLHRFVGNNKVLLVGNKADLIPKSVKHDKVKHWMRYSAKQL 129 (368)
T ss_dssp -CHHHHHHHHHHHHSCCEEEEEEETTSHH-----HHCCTTHHHHSSSSCEEEEEECGGGSCTTSCHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHhccCcEEEEEEECCCCc-----ccHHHHHHHHhCCCcEEEEEEChhcCCcccCHHHHHHHHHHHHHHc
Confidence 35778888888888999999999999864 34444555555689999999999997644322 22 2345667
Q ss_pred CC---eEEEeccCCCCChHHHHHHHHHHH
Q 030504 146 NL---QYYEISAKSNYNFEKPFLYLARKL 171 (176)
Q Consensus 146 ~~---~~~~~S~~~~~~v~~~~~~l~~~i 171 (176)
++ .++.+||++|.|++++++++.+..
T Consensus 130 g~~~~~v~~iSA~~g~gi~~L~~~l~~~~ 158 (368)
T 3h2y_A 130 GLKPEDVFLISAAKGQGIAELADAIEYYR 158 (368)
T ss_dssp TCCCSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred CCCcccEEEEeCCCCcCHHHHHhhhhhhc
Confidence 77 799999999999999999987654
|
| >1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.19 E-value=5e-11 Score=83.25 Aligned_cols=100 Identities=12% Similarity=0.050 Sum_probs=71.3
Q ss_pred EEeCCCcc-ccccccccccccccEEEEEEeCCChhhhhh--HHHHHHHHhhhcCCCCEEEEEeCCCCCccccCHHHHHHH
Q 030504 66 CWDTAGQE-KFGGLRDGYYIHGQCAIIMFDVTARLTYKN--VPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFH 142 (176)
Q Consensus 66 ~~D~~g~~-~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~--~~~~~~~~~~~~~~~p~liv~nK~Dl~~~~~~~~~~~~~ 142 (176)
+-..|||. .........+.++|+++.|+|+.++.+... +..+ ..++|.++|+||+|+.+........+++
T Consensus 3 i~w~PGhm~ka~~~~~~~l~~aDvVl~VvDAr~p~~~~~~~l~~~-------l~~kp~ilVlNK~DL~~~~~~~~~~~~~ 75 (282)
T 1puj_A 3 IQWFPGHMAKARREVTEKLKLIDIVYELVDARIPMSSRNPMIEDI-------LKNKPRIMLLNKADKADAAVTQQWKEHF 75 (282)
T ss_dssp ------CTTHHHHHHHHHGGGCSEEEEEEETTSTTTTSCHHHHHH-------CSSSCEEEEEECGGGSCHHHHHHHHHHH
T ss_pred CcCCchHHHHHHHHHHHHHhhCCEEEEEEeCCCCCccCCHHHHHH-------HCCCCEEEEEECcccCCHHHHHHHHHHH
Confidence 34578876 334455666889999999999999876653 2222 2589999999999998743333344566
Q ss_pred HHcCCeEEEeccCCCCChHHHHHHHHHHHh
Q 030504 143 RKKNLQYYEISAKSNYNFEKPFLYLARKLA 172 (176)
Q Consensus 143 ~~~~~~~~~~S~~~~~~v~~~~~~l~~~i~ 172 (176)
+..+++++.+||+++.|++++++.+.+.+.
T Consensus 76 ~~~g~~~i~iSA~~~~gi~~L~~~i~~~l~ 105 (282)
T 1puj_A 76 ENQGIRSLSINSVNGQGLNQIVPASKEILQ 105 (282)
T ss_dssp HTTTCCEEECCTTTCTTGGGHHHHHHHHHH
T ss_pred HhcCCcEEEEECCCcccHHHHHHHHHHHHH
Confidence 667889999999999999999998877654
|
| >3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus} | Back alignment and structure |
|---|
Probab=99.16 E-value=4.3e-12 Score=91.87 Aligned_cols=139 Identities=12% Similarity=0.035 Sum_probs=81.8
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCC----CCCccccceeEEEeEEEEEecCcEEEEEEEeCCCcccccccc-------cc
Q 030504 13 SFKLVIVGDGGTGKTTFVKRHLTGE----FEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLR-------DG 81 (176)
Q Consensus 13 ~~~i~i~G~~~~GKttl~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~-------~~ 81 (176)
..+++++|.+|+|||||+|+++... ......+..|++........... +.++||||........ ..
T Consensus 162 ~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~~---~~liDtPG~~~~~~~~~~l~~~~l~ 238 (369)
T 3ec1_A 162 GGDVYVVGCTNVGKSTFINRIIEEATGKGNVITTSYFPGTTLDMIEIPLESG---ATLYDTPGIINHHQMAHFVDARDLK 238 (369)
T ss_dssp TSCEEEECCTTSSHHHHHHHHHHHHHHTTCCCEEEECTTSSCEEEEEECSTT---CEEEECCSCCCCSSGGGGSCTTTHH
T ss_pred cCcEEEEcCCCCchHHHHHHHHhhccCCccceeecCCCCeEEeeEEEEeCCC---eEEEeCCCcCcHHHHHHHHhHHHHH
Confidence 3579999999999999999977541 11112223344444444444433 6899999964322111 11
Q ss_pred cc---ccccEEEEEEeCCCh---hhhhhHHHHHHHHhhhcCCCCEEEEEeCCCCCccccCHHHH-HHHHHcCCeEEEecc
Q 030504 82 YY---IHGQCAIIMFDVTAR---LTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQV-TFHRKKNLQYYEISA 154 (176)
Q Consensus 82 ~~---~~~~~~i~v~d~~~~---~s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~~~~~~~~~~-~~~~~~~~~~~~~S~ 154 (176)
.+ ...+.+++++++... ..+..+ ..+.. .+.|+++++||.|........... .+.+..+..+...++
T Consensus 239 ~~~~~~~i~~~~~~l~~~~~~~~g~l~~l----~~l~~--~~~~~~~v~~k~d~~~~~~~~~~~~~~~~~~g~~l~p~~~ 312 (369)
T 3ec1_A 239 IITPKREIHPRVYQLNEGQTLFFGGLARL----DYIKG--GRRSFVCYMANELTVHRTKLEKADSLYANQLGELLSPPSK 312 (369)
T ss_dssp HHSCSSCCCCEEEEECTTEEEEETTTEEE----EEEES--SSEEEEEEECTTSCEEEEEGGGHHHHHHHHBTTTBCSSCG
T ss_pred HHhcccccCceEEEEcCCceEEECCEEEE----EEccC--CCceEEEEecCCcccccccHHHHHHHHHHhcCCccCCCCc
Confidence 12 567999999998533 111111 11111 368999999999987655444444 444445665555555
Q ss_pred CCCCCh
Q 030504 155 KSNYNF 160 (176)
Q Consensus 155 ~~~~~v 160 (176)
....++
T Consensus 313 ~~~~~~ 318 (369)
T 3ec1_A 313 RYAAEF 318 (369)
T ss_dssp GGTTTC
T ss_pred hhhhhc
Confidence 544443
|
| >3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus} | Back alignment and structure |
|---|
Probab=99.14 E-value=4.1e-11 Score=86.79 Aligned_cols=97 Identities=21% Similarity=0.208 Sum_probs=71.8
Q ss_pred CccccccccccccccccEEEEEEeCCChhhhhhHHHHHHHHhhhcCCCCEEEEEeCCCCCccccCH-HH----HHHHHHc
Q 030504 71 GQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKA-KQ----VTFHRKK 145 (176)
Q Consensus 71 g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~~~~~~~-~~----~~~~~~~ 145 (176)
.++.|.+....++..++++++|+|++++.+ .|...+.+...+.|+++|+||+|+.+..... .. ...++..
T Consensus 57 ~~e~f~~~L~~~~~~~~lil~VvD~~d~~~-----s~~~~l~~~l~~~piilV~NK~DLl~~~~~~~~~~~~l~~~~~~~ 131 (369)
T 3ec1_A 57 DDDDFLSMLHRIGESKALVVNIVDIFDFNG-----SFIPGLPRFAADNPILLVGNKADLLPRSVKYPKLLRWMRRMAEEL 131 (369)
T ss_dssp --CHHHHHHHHHHHHCCEEEEEEETTCSGG-----GCCSSHHHHCTTSCEEEEEECGGGSCTTCCHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHhhccCcEEEEEEECCCCCC-----chhhHHHHHhCCCCEEEEEEChhcCCCccCHHHHHHHHHHHHHHc
Confidence 477888888888899999999999998763 2333333334588999999999997654322 22 2335666
Q ss_pred CC---eEEEeccCCCCChHHHHHHHHHHHh
Q 030504 146 NL---QYYEISAKSNYNFEKPFLYLARKLA 172 (176)
Q Consensus 146 ~~---~~~~~S~~~~~~v~~~~~~l~~~i~ 172 (176)
++ .++.+||++|.|++++++.+.+...
T Consensus 132 g~~~~~v~~iSA~~g~gi~~L~~~I~~~~~ 161 (369)
T 3ec1_A 132 GLCPVDVCLVSAAKGIGMAKVMEAINRYRE 161 (369)
T ss_dssp TCCCSEEEECBTTTTBTHHHHHHHHHHHHT
T ss_pred CCCcccEEEEECCCCCCHHHHHHHHHhhcc
Confidence 76 7899999999999999999876543
|
| >3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str} | Back alignment and structure |
|---|
Probab=99.14 E-value=1.1e-11 Score=89.68 Aligned_cols=135 Identities=11% Similarity=0.027 Sum_probs=76.7
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCCC-----CCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccc-------
Q 030504 13 SFKLVIVGDGGTGKTTFVKRHLTGEF-----EKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRD------- 80 (176)
Q Consensus 13 ~~~i~i~G~~~~GKttl~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~------- 80 (176)
..+++++|.+|+|||||+|+++.... .....+..|++........... +.++||||.........
T Consensus 160 ~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~~---~~liDtPG~~~~~~~~~~l~~~~l 236 (368)
T 3h2y_A 160 GKDVYVVGCTNVGKSTFINRMIKEFSDETENVITTSHFPGTTLDLIDIPLDEE---SSLYDTPGIINHHQMAHYVGKQSL 236 (368)
T ss_dssp TSCEEEEEBTTSSHHHHHHHHHHHHTTSCSSCCEEECCC----CEEEEESSSS---CEEEECCCBCCTTSGGGGSCHHHH
T ss_pred cceEEEecCCCCChhHHHHHHHhhhccccccceecCCCCCeecceEEEEecCC---eEEEeCCCcCcHHHHHHHhhHHHH
Confidence 35899999999999999999775421 1123444566666655555433 78999999643321111
Q ss_pred -cc--cccccEEEEEEeCCChhhhhhHHHHHHHHhhhcCCCCEEEEEeCCCCCccccCHHHHHHH-HHcCCeEEEec
Q 030504 81 -GY--YIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFH-RKKNLQYYEIS 153 (176)
Q Consensus 81 -~~--~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~~~~~~~~~~~~~-~~~~~~~~~~S 153 (176)
.+ ....+.+++++++........+.. +..+.. .+.|+++++||.|...........++. +..+..+...+
T Consensus 237 ~~~~~~~~i~~~~~~l~~~~~~~~g~l~~-~d~l~~--~~~~~~~v~nk~d~~~~~~~~~~~~~~~~~~g~~l~p~~ 310 (368)
T 3h2y_A 237 KLITPTKEIKPMVFQLNEEQTLFFSGLAR-FDYVSG--GRRAFTCHFSNRLTIHRTKLEKADELYKNHAGDLLSPPT 310 (368)
T ss_dssp HHHSCSSCCCCEEEEECTTEEEEETTTEE-EEEEES--SSEEEEEEECTTSCEEEEEHHHHHHHHHHHBTTTBCSSC
T ss_pred HHhccccccCceEEEEcCCCEEEEcceEE-EEEecC--CCceEEEEecCccccccccHHHHHHHHHHHhCCccCCCc
Confidence 11 246788899998743211111100 111111 378999999999987655555544443 33454444333
|
| >2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A | Back alignment and structure |
|---|
Probab=99.10 E-value=8.7e-11 Score=87.88 Aligned_cols=152 Identities=13% Similarity=0.057 Sum_probs=85.9
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHhc-----CCCC-----Cccccc-----------eeEEEeEEEEE-------------
Q 030504 11 YPSFKLVIVGDGGTGKTTFVKRHLT-----GEFE-----KKYEPT-----------IGVEVHPLDFF------------- 56 (176)
Q Consensus 11 ~~~~~i~i~G~~~~GKttl~~~~~~-----~~~~-----~~~~~~-----------~~~~~~~~~~~------------- 56 (176)
.+...|+++|.+||||||+++++.. |.-. ..+.+. .++........
T Consensus 99 ~~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r~aa~~qL~~~~~~~~i~v~~~~~~~dp~~i~~~al~~ 178 (504)
T 2j37_W 99 GKQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEK 178 (504)
T ss_dssp S--EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSSHHHHHHHHHHHHHTCCEEECCCCSCHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccchhHHHHHHHHhhccCceEEccCCCCCHHHHHHHHHHH
Confidence 3467899999999999999999762 2210 000000 00111110000
Q ss_pred ecCcEEEEEEEeCCCccccc-cccccc-----cccccEEEEEEeCCChhhhhhHHHHHHHHhhhcCCCCE-EEEEeCCCC
Q 030504 57 TNCGKIRFYCWDTAGQEKFG-GLRDGY-----YIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI-VLCGNKVDV 129 (176)
Q Consensus 57 ~~~~~~~~~~~D~~g~~~~~-~~~~~~-----~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~-liv~nK~Dl 129 (176)
.....+.+.++||||..... ..+... +..+|.+++|+|+..... .......+.+ ..|+ .+|+||.|.
T Consensus 179 ~~~~~~DvvIIDTpG~~~~~~~l~~el~~~~~~i~pd~vllVvDa~~g~~---~~~~a~~~~~---~~~i~gvVlNK~D~ 252 (504)
T 2j37_W 179 FKNENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQA---CEAQAKAFKD---KVDVASVIVTKLDG 252 (504)
T ss_dssp HHHTTCCEEEEEECCCCTTCHHHHHHHHHHHHHHCCSEEEEEEETTCCTT---HHHHHHHHHH---HHCCCCEEEECTTS
T ss_pred HHHCCCcEEEEeCCCCcccchhHHHHHHHHHhhhcCceEEEEEecccccc---HHHHHHHHHh---hcCceEEEEeCCcc
Confidence 00134678999999965321 111111 226899999999987532 2222223322 2575 888999998
Q ss_pred CccccCHHHHHHHHHcCCeE------------------EEeccCCCCC-hHHHHHHHHHH
Q 030504 130 KNRQVKAKQVTFHRKKNLQY------------------YEISAKSNYN-FEKPFLYLARK 170 (176)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~------------------~~~S~~~~~~-v~~~~~~l~~~ 170 (176)
..+.. .........+.++ +.+|+..|.| +.++++++.+.
T Consensus 253 ~~~~g--~~l~~~~~~g~PI~fig~ge~~~dl~~f~~~~~vsal~G~Gdi~~Lie~i~e~ 310 (504)
T 2j37_W 253 HAKGG--GALSAVAATKSPIIFIGTGEHIDDFEPFKTQPFISKLLGMGDIEGLIDKVNEL 310 (504)
T ss_dssp CCCCT--HHHHHHHHHCCCEEEEECSSSTTCEECCTHHHHHHCCCTTTTTTTTHHHHTTT
T ss_pred ccchH--HHHHHHHHhCCCeEEeccccchhhhhccCcceeeehhcCCCcHHHHHHHHHHH
Confidence 74321 2233333444433 3378899999 99999998765
|
| >3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.05 E-value=8.6e-10 Score=76.55 Aligned_cols=135 Identities=17% Similarity=0.274 Sum_probs=68.3
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCCCCCccc------cceeEE-EeEEEEEecCc--EEEEEEEeCCCcccccc---c--
Q 030504 13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYE------PTIGVE-VHPLDFFTNCG--KIRFYCWDTAGQEKFGG---L-- 78 (176)
Q Consensus 13 ~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~------~~~~~~-~~~~~~~~~~~--~~~~~~~D~~g~~~~~~---~-- 78 (176)
.++++++|++|+|||||++.+.+-....... +..... .....+..... ...++++|++|...... .
T Consensus 2 ~f~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~~~~ 81 (270)
T 3sop_A 2 DFNIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNENCWE 81 (270)
T ss_dssp EEEEEEEESSSSSHHHHHHHHHHHHC------------CCCCCSCCEEEESCC----CCEEEEECCCC--CCSBCTTCSH
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhhcccHHHHH
Confidence 5899999999999999999866422111100 000000 01111111112 23678999987421100 0
Q ss_pred -----------------------cccccccccEEEEEEeCCC-hhhhhhHHHHHHHHhhhcCCCCEEEEEeCCCCCcccc
Q 030504 79 -----------------------RDGYYIHGQCAIIMFDVTA-RLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQV 134 (176)
Q Consensus 79 -----------------------~~~~~~~~~~~i~v~d~~~-~~s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~~~~~ 134 (176)
.+..+..+++.++++|... +-.-.. ...+..+.+ ..++++|.+|.|......
T Consensus 82 ~i~~~~~~~~~~~~~~~LS~G~~qrv~iaRal~~lllldep~~gL~~lD-~~~l~~L~~---~~~vI~Vi~K~D~lt~~e 157 (270)
T 3sop_A 82 PIEKYINEQYEKFLKEEVNIARKKRIPDTRVHCCLYFISPTGHSLRPLD-LEFMKHLSK---VVNIIPVIAKADTMTLEE 157 (270)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTCCSSCCCCSCCEEEEEECCCSSSCCHHH-HHHHHHHHT---TSEEEEEETTGGGSCHHH
T ss_pred HHHHHHHHHHHhhhHHhcCcccchhhhhheeeeeeEEEecCCCcCCHHH-HHHHHHHHh---cCcEEEEEeccccCCHHH
Confidence 0111234688888888652 211111 223333333 489999999999765332
Q ss_pred CH----HHHHHHHHcCCeEEE
Q 030504 135 KA----KQVTFHRKKNLQYYE 151 (176)
Q Consensus 135 ~~----~~~~~~~~~~~~~~~ 151 (176)
.. .........++.++.
T Consensus 158 ~~~~k~~i~~~l~~~~i~i~~ 178 (270)
T 3sop_A 158 KSEFKQRVRKELEVNGIEFYP 178 (270)
T ss_dssp HHHHHHHHHHHHHHTTCCCSS
T ss_pred HHHHHHHHHHHHHHcCccccC
Confidence 22 223344556666554
|
| >2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.03 E-value=1.1e-09 Score=80.20 Aligned_cols=139 Identities=16% Similarity=0.191 Sum_probs=67.9
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCCCCCc--cccceeEEEeEEEEEecC--cEEEEEEEeCCCcccccc-----------
Q 030504 13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKK--YEPTIGVEVHPLDFFTNC--GKIRFYCWDTAGQEKFGG----------- 77 (176)
Q Consensus 13 ~~~i~i~G~~~~GKttl~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~--~~~~~~~~D~~g~~~~~~----------- 77 (176)
.++++|+|++|+|||||++.+.+-..... .....+.......+.... -...+.++|++|......
T Consensus 42 i~~vaLvG~nGaGKSTLln~L~G~~l~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~D~~~~g~~~~~~~~~~~i~~~ 121 (427)
T 2qag_B 42 CFNILCVGETGLGKSTLMDTLFNTKFEGEPATHTQPGVQLQSNTYDLQESNVRLKLTIVSTVGFGDQINKEDSYKPIVEF 121 (427)
T ss_dssp EEEEEEECSTTSSSHHHHHHHHTSCC-------CCSSCEEEEEEEEEEC--CEEEEEEEEEECCCC-CCHHHHSHHHHHH
T ss_pred eeEEEEECCCCCCHHHHHHHHhCccccCCcCCCCCccceEeeEEEEeecCccccccchhhhhhhhhccccchhhhHHHHH
Confidence 35799999999999999998665432111 000111122222222222 224688999987532100
Q ss_pred ---cccc-------------cccc--ccE-EEEEEeCCChhhhhhHHHHHHHHhhhcCCCCEEEEEeCCCCCccccCHHH
Q 030504 78 ---LRDG-------------YYIH--GQC-AIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQ 138 (176)
Q Consensus 78 ---~~~~-------------~~~~--~~~-~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~~~~~~~~~ 138 (176)
.+.. .... +|+ ++++.|...+-+... ...+..+. .+.|+++|.||+|..........
T Consensus 122 i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~~~D-ieilk~L~---~~~~vI~Vi~KtD~Lt~~E~~~l 197 (427)
T 2qag_B 122 IDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLKSLD-LVTMKKLD---SKVNIIPIIAKADAISKSELTKF 197 (427)
T ss_dssp HHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---CHHH-HHHHHHTC---SCSEEEEEESCGGGSCHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCCHHH-HHHHHHHh---hCCCEEEEEcchhccchHHHHHH
Confidence 0000 1112 233 444555543322111 12222222 48899999999997653322222
Q ss_pred ----HHHHHHcCCeEEEeccC
Q 030504 139 ----VTFHRKKNLQYYEISAK 155 (176)
Q Consensus 139 ----~~~~~~~~~~~~~~S~~ 155 (176)
.......|++++.+|.-
T Consensus 198 ~~~I~~~L~~~gi~I~~is~~ 218 (427)
T 2qag_B 198 KIKITSELVSNGVQIYQFPTD 218 (427)
T ss_dssp HHHHHHHHBTTBCCCCCCC--
T ss_pred HHHHHHHHHHcCCcEEecCCC
Confidence 22234467777777753
|
| >1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A* | Back alignment and structure |
|---|
Probab=99.01 E-value=5.5e-09 Score=76.42 Aligned_cols=156 Identities=19% Similarity=0.185 Sum_probs=82.1
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCCCCCccccce-e--EEEeEEEEEecCcEEEEEEEeCCCccccccccccc-----cc
Q 030504 13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTI-G--VEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGY-----YI 84 (176)
Q Consensus 13 ~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~-~--~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~-----~~ 84 (176)
...++++|++|+|||||+|.+.+-.......-+. + .+....... ......+.++|++|..........+ +.
T Consensus 69 ~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~~~~v~q-~~~~~~ltv~D~~g~~~~~~~~~~~L~~~~L~ 147 (413)
T 1tq4_A 69 VLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYK-HPNIPNVVFWDLPGIGSTNFPPDTYLEKMKFY 147 (413)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEE-CSSCTTEEEEECCCGGGSSCCHHHHHHHTTGG
T ss_pred CeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecceeEEecc-ccccCCeeehHhhcccchHHHHHHHHHHcCCC
Confidence 3479999999999999999866422111111111 1 111111111 1111247889999854221111111 23
Q ss_pred cccEEEEEEeCCChhhhhhHHHHHHHHhhhcCCCCEEEEEeCCCCC--cc-------ccCHHH----HHHH----HHcC-
Q 030504 85 HGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVK--NR-------QVKAKQ----VTFH----RKKN- 146 (176)
Q Consensus 85 ~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~--~~-------~~~~~~----~~~~----~~~~- 146 (176)
..+..++ ++..... +.-......+... +.|+++|.||.|+. ++ ....+. ..+. .+.+
T Consensus 148 ~~~~~~~-lS~G~~~--kqrv~la~aL~~~--~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~~g~ 222 (413)
T 1tq4_A 148 EYDFFII-ISATRFK--KNDIDIAKAISMM--KKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENGI 222 (413)
T ss_dssp GCSEEEE-EESSCCC--HHHHHHHHHHHHT--TCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHTTC
T ss_pred ccCCeEE-eCCCCcc--HHHHHHHHHHHhc--CCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 3355554 6665211 1111233333333 78999999999964 11 111111 2222 1222
Q ss_pred --CeEEEecc--CCCCChHHHHHHHHHHHhcC
Q 030504 147 --LQYYEISA--KSNYNFEKPFLYLARKLAGS 174 (176)
Q Consensus 147 --~~~~~~S~--~~~~~v~~~~~~l~~~i~~~ 174 (176)
...+.+|+ ..+.|++++.+.+.+.+.+.
T Consensus 223 ~~~~iiliSsh~l~~~~~e~L~d~I~~~Lpeg 254 (413)
T 1tq4_A 223 AEPPIFLLSNKNVCHYDFPVLMDKLISDLPIY 254 (413)
T ss_dssp SSCCEEECCTTCTTSTTHHHHHHHHHHHSCGG
T ss_pred CCCcEEEEecCcCCccCHHHHHHHHHHhCccc
Confidence 36788999 56667999999998876543
|
| >1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=98.82 E-value=5.3e-09 Score=73.05 Aligned_cols=60 Identities=18% Similarity=0.164 Sum_probs=35.6
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccc
Q 030504 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK 74 (176)
Q Consensus 11 ~~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~ 74 (176)
...++++++|.+|+|||||+|++.+... ....+..|+|.....+.... .+.++||||...
T Consensus 118 ~~~~~v~~vG~~nvGKSsliN~l~~~~~-~~~~~~~g~T~~~~~~~~~~---~~~l~DtpG~~~ 177 (282)
T 1puj_A 118 PRAIRALIIGIPNVGKSTLINRLAKKNI-AKTGDRPGITTSQQWVKVGK---ELELLDTPGILW 177 (282)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHTSCC-C------------CCEEETT---TEEEEECCCCCC
T ss_pred CCCceEEEEecCCCchHHHHHHHhcCce-eecCCCCCeeeeeEEEEeCC---CEEEEECcCcCC
Confidence 4568999999999999999999775442 23344445554443333322 478999999643
|
| >3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A* | Back alignment and structure |
|---|
Probab=98.81 E-value=2.1e-09 Score=74.25 Aligned_cols=92 Identities=13% Similarity=0.025 Sum_probs=63.6
Q ss_pred CCCcccc-ccccccccccccEEEEEEeCCChhhhhhHHHHHHHHhhhcCCCCEEEEEeCCCCCccccCHHHHHHHHHcCC
Q 030504 69 TAGQEKF-GGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNL 147 (176)
Q Consensus 69 ~~g~~~~-~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~~~~~~~~~~~~~~~~~~ 147 (176)
.|||... .......+.++|+++.|+|+.++.+..... +. + . ++|.++|+||+|+.+........+++++.+.
T Consensus 4 ~PGhm~ka~~~~~~~l~~~D~vl~VvDar~P~~~~~~~--l~-l---l-~k~~iivlNK~DL~~~~~~~~~~~~~~~~g~ 76 (262)
T 3cnl_A 4 YPGHIEKAKRQIKDLLRLVNTVVEVRDARAPFATSAYG--VD-F---S-RKETIILLNKVDIADEKTTKKWVEFFKKQGK 76 (262)
T ss_dssp -----CCTTHHHHHHHTTCSEEEEEEETTSTTTTSCTT--SC-C---T-TSEEEEEEECGGGSCHHHHHHHHHHHHHTTC
T ss_pred CchHHHHHHHHHHHHHhhCCEEEEEeeCCCCCcCcChH--HH-h---c-CCCcEEEEECccCCCHHHHHHHHHHHHHcCC
Confidence 4676532 234556678999999999999887654321 11 1 1 7899999999999875433344556666788
Q ss_pred eEEEeccCCCCChHHHHHHHH
Q 030504 148 QYYEISAKSNYNFEKPFLYLA 168 (176)
Q Consensus 148 ~~~~~S~~~~~~v~~~~~~l~ 168 (176)
++ .+||+++.|++++++++.
T Consensus 77 ~v-~iSa~~~~gi~~L~~~l~ 96 (262)
T 3cnl_A 77 RV-ITTHKGEPRKVLLKKLSF 96 (262)
T ss_dssp CE-EECCTTSCHHHHHHHHCC
T ss_pred eE-EEECCCCcCHHHHHHHHH
Confidence 88 999999999999887764
|
| >3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A* | Back alignment and structure |
|---|
Probab=98.78 E-value=2.8e-09 Score=73.68 Aligned_cols=57 Identities=21% Similarity=0.156 Sum_probs=35.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccc
Q 030504 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK 74 (176)
Q Consensus 14 ~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~ 74 (176)
++++++|.+|+|||||+|++...... ...++.|++.....+..+ ..+.+|||||...
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~~-~~~~~~g~T~~~~~~~~~---~~~~l~DtpG~~~ 156 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRAS-SVGAQPGITKGIQWFSLE---NGVKILDTPGILY 156 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC-----------CCSCEEECT---TSCEEESSCEECC
T ss_pred hheEEeCCCCCCHHHHHHHHhccccc-ccCCCCCCccceEEEEeC---CCEEEEECCCccc
Confidence 69999999999999999997754432 334555655544333332 2578999999764
|
| >3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=98.76 E-value=6.8e-08 Score=71.12 Aligned_cols=142 Identities=19% Similarity=0.125 Sum_probs=79.7
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHhc-----CCCC-----Ccccc-----------ceeEEEeEEEEE-------------e
Q 030504 12 PSFKLVIVGDGGTGKTTFVKRHLT-----GEFE-----KKYEP-----------TIGVEVHPLDFF-------------T 57 (176)
Q Consensus 12 ~~~~i~i~G~~~~GKttl~~~~~~-----~~~~-----~~~~~-----------~~~~~~~~~~~~-------------~ 57 (176)
++..|+++|++|+||||++..+.. |.-. ..+.+ ..+......... .
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv~~~~~~~dp~~i~~~al~~a 178 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVFGNPQEKDAIKLAKEGVDYF 178 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHHHGGGTCEEECCTTCCCHHHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHH
Confidence 468899999999999999988653 1100 00000 011111100000 0
Q ss_pred cCcEEEEEEEeCCCcccccc-ccc-----cccccccEEEEEEeCCChhhhhhHHHHHHHHhhhcCCCCEEEEEeCCCCCc
Q 030504 58 NCGKIRFYCWDTAGQEKFGG-LRD-----GYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKN 131 (176)
Q Consensus 58 ~~~~~~~~~~D~~g~~~~~~-~~~-----~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~~ 131 (176)
....+.+.++||+|...... ... .....+|.+++|+|+.... ........+.+. -.+..+|+||.|...
T Consensus 179 ~~~~~DvVIIDTaGrl~~d~~lm~el~~i~~~~~pd~vlLVvDA~~gq---~a~~~a~~f~~~--~~i~gVIlTKlD~~~ 253 (443)
T 3dm5_A 179 KSKGVDIIIVDTAGRHKEDKALIEEMKQISNVIHPHEVILVIDGTIGQ---QAYNQALAFKEA--TPIGSIIVTKLDGSA 253 (443)
T ss_dssp HHTTCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGGG---GHHHHHHHHHHS--CTTEEEEEECCSSCS
T ss_pred HhCCCCEEEEECCCcccchHHHHHHHHHHHHhhcCceEEEEEeCCCch---hHHHHHHHHHhh--CCCeEEEEECCCCcc
Confidence 01226788999999543211 100 1123578999999988643 233333333332 345678899999865
Q ss_pred cccCHHHHHHHHHcCCeEEEeccCCCCChHH
Q 030504 132 RQVKAKQVTFHRKKNLQYYEISAKSNYNFEK 162 (176)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~ 162 (176)
+.- .........+.++..++. |+++++
T Consensus 254 ~gG--~~ls~~~~~g~PI~fig~--Ge~vdd 280 (443)
T 3dm5_A 254 KGG--GALSAVAATGAPIKFIGT--GEKIDD 280 (443)
T ss_dssp SHH--HHHHHHHTTCCCEEEEEC--SSSTTC
T ss_pred ccc--HHHHHHHHHCCCEEEEEc--CCChHH
Confidence 432 344555567888887775 777654
|
| >1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8 | Back alignment and structure |
|---|
Probab=98.75 E-value=8.9e-09 Score=72.53 Aligned_cols=91 Identities=13% Similarity=0.073 Sum_probs=65.6
Q ss_pred ccccccccccccccEEEEEEeCCChhh-hhhHHHHHHHHhhhcCCCCEEEEEeCCCCCcccc----CHHHHHHHHHcCCe
Q 030504 74 KFGGLRDGYYIHGQCAIIMFDVTARLT-YKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQV----KAKQVTFHRKKNLQ 148 (176)
Q Consensus 74 ~~~~~~~~~~~~~~~~i~v~d~~~~~s-~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~~~~~----~~~~~~~~~~~~~~ 148 (176)
+...+.+..+.++|.+++|+|+.+|.. ...+..++..... .++|.++|+||+||.+... ..+..+.++..+.+
T Consensus 75 R~~~l~R~~~anvD~v~~V~~~~~p~~~~~~i~r~L~~~~~--~~~~~vivlnK~DL~~~~~~~~~~~~~~~~y~~~g~~ 152 (307)
T 1t9h_A 75 RTNELIRPPICNVDQAVLVFSAVQPSFSTALLDRFLVLVEA--NDIQPIICITKMDLIEDQDTEDTIQAYAEDYRNIGYD 152 (307)
T ss_dssp CSCEETTTTEECCCEEEEEEESTTTTCCHHHHHHHHHHHHT--TTCEEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTCC
T ss_pred hhhhhhHHHHHhCCEEEEEEeCCCCCCCHHHHHHHHHHHHH--CCCCEEEEEECCccCchhhhHHHHHHHHHHHHhCCCe
Confidence 444566667889999999999997753 3333344333333 3889999999999987543 23445666677899
Q ss_pred EEEeccCCCCChHHHHHH
Q 030504 149 YYEISAKSNYNFEKPFLY 166 (176)
Q Consensus 149 ~~~~S~~~~~~v~~~~~~ 166 (176)
++.+|+.++.|+++++..
T Consensus 153 v~~~sa~~~~g~~~L~~~ 170 (307)
T 1t9h_A 153 VYLTSSKDQDSLADIIPH 170 (307)
T ss_dssp EEECCHHHHTTCTTTGGG
T ss_pred EEEEecCCCCCHHHHHhh
Confidence 999999999998876654
|
| >2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B | Back alignment and structure |
|---|
Probab=98.67 E-value=4.2e-09 Score=77.66 Aligned_cols=85 Identities=16% Similarity=0.052 Sum_probs=49.5
Q ss_pred cEEEEEEEeCCCcccccc-cc-----ccccccccEEEEEEeCCChhhhhhHHHHHHHHhhhcCCC-C-EEEEEeCCCCCc
Q 030504 60 GKIRFYCWDTAGQEKFGG-LR-----DGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENI-P-IVLCGNKVDVKN 131 (176)
Q Consensus 60 ~~~~~~~~D~~g~~~~~~-~~-----~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~-p-~liv~nK~Dl~~ 131 (176)
..+.+.++||||...... .. ...+..+|.+++|+|+.... ........+. ... | ..+|+||.|...
T Consensus 179 ~~~D~vIIDT~G~~~~~~~l~~~l~~i~~~~~~d~vllVvda~~g~---~~~~~~~~~~---~~~~~i~gvVlnK~D~~~ 252 (432)
T 2v3c_C 179 KKADVLIIDTAGRHKEEKGLLEEMKQIKEITNPDEIILVIDGTIGQ---QAGIQAKAFK---EAVGEIGSIIVTKLDGSA 252 (432)
T ss_dssp SSCSEEEEECCCSCSSHHHHHHHHHHTTSSSCCSEEEEEEEGGGGG---GHHHHHHHHH---TTSCSCEEEEEECSSSCS
T ss_pred hCCCEEEEcCCCCccccHHHHHHHHHHHHHhcCcceeEEeeccccH---HHHHHHHHHh---hcccCCeEEEEeCCCCcc
Confidence 345688999999653211 11 11123689999999987553 2222222222 245 6 889999999864
Q ss_pred cccCHHHHHHHHHcCCeEEEe
Q 030504 132 RQVKAKQVTFHRKKNLQYYEI 152 (176)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~ 152 (176)
.. ..........+.++..+
T Consensus 253 ~~--g~~l~~~~~~~~pi~~i 271 (432)
T 2v3c_C 253 KG--GGALSAVAETKAPIKFI 271 (432)
T ss_dssp TT--HHHHHHHHHSSCCEEEE
T ss_pred ch--HHHHHHHHHHCCCEEEe
Confidence 32 23345556666665554
|
| >2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V | Back alignment and structure |
|---|
Probab=98.52 E-value=5.7e-07 Score=64.61 Aligned_cols=83 Identities=10% Similarity=0.067 Sum_probs=57.6
Q ss_pred ccccccEEEEEEeCCChh-hhhhHHHHHHHHhhhcCCCCEEEEEeCCCCCcccc---CHHHHHHHHHcCCeEEEeccCCC
Q 030504 82 YYIHGQCAIIMFDVTARL-TYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQV---KAKQVTFHRKKNLQYYEISAKSN 157 (176)
Q Consensus 82 ~~~~~~~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~~~~~---~~~~~~~~~~~~~~~~~~S~~~~ 157 (176)
...++|.+++|.+. .|. +...+..++...... ++|.++|+||+||.+... ..+....+...|++++.+|+.++
T Consensus 127 i~anvD~v~iv~a~-~P~~~~~~i~r~L~~a~~~--~~~~iivlNK~DL~~~~~~~~~~~~~~~y~~~G~~v~~~Sa~~~ 203 (358)
T 2rcn_A 127 IAANIDQIVIVSAI-LPELSLNIIDRYLVGCETL--QVEPLIVLNKIDLLDDEGMDFVNEQMDIYRNIGYRVLMVSSHTQ 203 (358)
T ss_dssp EEECCCEEEEEEES-TTTCCHHHHHHHHHHHHHH--TCEEEEEEECGGGCCHHHHHHHHHHHHHHHTTTCCEEECBTTTT
T ss_pred HHhcCCEEEEEEeC-CCCCCHHHHHHHHHHHHhc--CCCEEEEEECccCCCchhHHHHHHHHHHHHhCCCcEEEEecCCC
Confidence 36788999988664 453 333344444333333 788899999999986543 22234556677899999999999
Q ss_pred CChHHHHHHH
Q 030504 158 YNFEKPFLYL 167 (176)
Q Consensus 158 ~~v~~~~~~l 167 (176)
.|++++...+
T Consensus 204 ~gl~~L~~~~ 213 (358)
T 2rcn_A 204 DGLKPLEEAL 213 (358)
T ss_dssp BTHHHHHHHH
T ss_pred cCHHHHHHhc
Confidence 9999877653
|
| >3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A | Back alignment and structure |
|---|
Probab=98.51 E-value=1.9e-07 Score=68.73 Aligned_cols=92 Identities=12% Similarity=0.048 Sum_probs=56.2
Q ss_pred EEEEEEEeCCCccc--ccc-cccc-----ccccccEEEEEEeCCChhhhhhHHHHHHHHhhhcCCCCEEEEEeCCCCCcc
Q 030504 61 KIRFYCWDTAGQEK--FGG-LRDG-----YYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNR 132 (176)
Q Consensus 61 ~~~~~~~D~~g~~~--~~~-~~~~-----~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~~~ 132 (176)
.+.+.++||+|... ... .... .....+.+++|+|+..... .......+.+. -.+..+|+||.|...+
T Consensus 179 ~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~gq~---a~~~a~~f~~~--~~~~gVIlTKlD~~a~ 253 (433)
T 3kl4_A 179 KMDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASIGQK---AYDLASRFHQA--SPIGSVIITKMDGTAK 253 (433)
T ss_dssp TCSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGGGGG---GHHHHHHHHHH--CSSEEEEEECGGGCSC
T ss_pred CCCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCccchH---HHHHHHHHhcc--cCCcEEEEeccccccc
Confidence 45678999999543 111 1111 1124689999999986532 22333344433 3567889999998643
Q ss_pred ccCHHHHHHHHHcCCeEEEeccCCCCChH
Q 030504 133 QVKAKQVTFHRKKNLQYYEISAKSNYNFE 161 (176)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~S~~~~~~v~ 161 (176)
. ..........+.|+..++. |++++
T Consensus 254 ~--G~als~~~~~g~Pi~fig~--Ge~v~ 278 (433)
T 3kl4_A 254 G--GGALSAVVATGATIKFIGT--GEKID 278 (433)
T ss_dssp H--HHHHHHHHHHTCEEEEEEC--CSSSS
T ss_pred c--hHHHHHHHHHCCCEEEEEC--CCChH
Confidence 2 2345566667889888775 77663
|
| >1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F | Back alignment and structure |
|---|
Probab=98.46 E-value=3.5e-07 Score=64.30 Aligned_cols=92 Identities=12% Similarity=0.069 Sum_probs=57.3
Q ss_pred EEEEEEEeCCCccc--cc-cccc-----cccccccEEEEEEeCCChhhhhhHHHHHHHHhhhcCCCC-EEEEEeCCCCCc
Q 030504 61 KIRFYCWDTAGQEK--FG-GLRD-----GYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIP-IVLCGNKVDVKN 131 (176)
Q Consensus 61 ~~~~~~~D~~g~~~--~~-~~~~-----~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p-~liv~nK~Dl~~ 131 (176)
.+.+.++||||... .. .... .....+|.+++|+|+... +........+.+ ..| ..+|.||.|...
T Consensus 180 ~~D~ViIDTpg~~~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g---~~~~~~~~~~~~---~~~i~gvVlnk~D~~~ 253 (297)
T 1j8m_F 180 KMEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIG---QKAYDLASKFNQ---ASKIGTIIITKMDGTA 253 (297)
T ss_dssp TCSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGG---GGHHHHHHHHHH---TCTTEEEEEECGGGCT
T ss_pred CCCEEEEeCCCCcccccHHHHHHHHHHHHHHhcCCEEEEEeeCCch---HHHHHHHHHHHh---hCCCCEEEEeCCCCCc
Confidence 45688999999765 21 1111 123468999999998643 333333333332 456 778899999754
Q ss_pred cccCHHHHHHHHHcCCeEEEeccCCCCChHH
Q 030504 132 RQVKAKQVTFHRKKNLQYYEISAKSNYNFEK 162 (176)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~ 162 (176)
+. ..........+.++..++ .|+++++
T Consensus 254 ~~--g~~~~~~~~~~~pi~~i~--~Ge~v~d 280 (297)
T 1j8m_F 254 KG--GGALSAVAATGATIKFIG--TGEKIDE 280 (297)
T ss_dssp TH--HHHHHHHHTTTCCEEEEE--CSSSTTC
T ss_pred ch--HHHHHHHHHHCcCEEEEe--CCCChhh
Confidence 22 234566777888887776 5666654
|
| >1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A* | Back alignment and structure |
|---|
Probab=98.41 E-value=3.7e-07 Score=69.67 Aligned_cols=65 Identities=15% Similarity=0.027 Sum_probs=39.2
Q ss_pred CCCeeEEEEEcCCCCcHHHHHHHHhcCCCCCcccc-ceeEEEeEEEE--Ee-cCcEEEEEEEeCCCccc
Q 030504 10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEP-TIGVEVHPLDF--FT-NCGKIRFYCWDTAGQEK 74 (176)
Q Consensus 10 ~~~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~-~~~~~~~~~~~--~~-~~~~~~~~~~D~~g~~~ 74 (176)
..+..+|+|+|.+|+|||||+|++++....-.... +.+.+...+.. .. ......+.++||||...
T Consensus 35 ~~~~~~VaivG~pnvGKStLiN~L~g~~~~~~~~~tt~~~T~gi~~~~~~~~~~~~~~i~LiDTpGi~~ 103 (592)
T 1f5n_A 35 TQPMVVVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEGLGD 103 (592)
T ss_dssp CSBEEEEEEEEBTTSSHHHHHHHHTTCSSCSCCCCSSSCCCCSEEEEEEECSSSTTCEEEEEEECCBCC
T ss_pred cCCCcEEEEECCCCCCHHHHHHhHcCCCCccccCCCCCCceeEEEEeecccccCCCceEEEecCCCcCc
Confidence 45678999999999999999999776542111111 11222222211 11 12345688999999653
|
| >1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A | Back alignment and structure |
|---|
Probab=98.39 E-value=1e-08 Score=76.60 Aligned_cols=110 Identities=15% Similarity=-0.025 Sum_probs=61.3
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccc--ccccc--------c
Q 030504 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK--FGGLR--------D 80 (176)
Q Consensus 11 ~~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~--~~~~~--------~ 80 (176)
....+|+++|.+|+||||+.+++..... ....++.++..........+......+||..|.+. ....+ .
T Consensus 37 ~~~~~IvlvGlpGsGKSTia~~La~~l~-~~~~~t~~~~~d~~r~~~~g~~~~~~ifd~~g~~~~r~re~~~~~~l~~~~ 115 (469)
T 1bif_A 37 NCPTLIVMVGLPARGKTYISKKLTRYLN-FIGVPTREFNVGQYRRDMVKTYKSFEFFLPDNEEGLKIRKQCALAALNDVR 115 (469)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHH-HTTCCEEEEEHHHHHHHHHCSCCCGGGGCTTCHHHHHHHHHHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHHh-ccCCCceEEecchhhhhhccCCCcccccCCCCHHHHHHHHHHHHHHHHHHH
Confidence 4567999999999999999999764321 11122222111111111111112346788888632 23332 4
Q ss_pred cccccccEEEEEEeCCChhhhhhHHHHHHHHhhhcCCCCEEEEE
Q 030504 81 GYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCG 124 (176)
Q Consensus 81 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~liv~ 124 (176)
.++....+.++|+|.++. ..+....|...+.+. ..+++.+-
T Consensus 116 ~~l~~~~G~~vV~D~tn~-~~~~R~~~~~~~~~~--~~~vv~l~ 156 (469)
T 1bif_A 116 KFLSEEGGHVAVFDATNT-TRERRAMIFNFGEQN--GYKTFFVE 156 (469)
T ss_dssp HHHHTTCCSEEEEESCCC-SHHHHHHHHHHHHHH--TCEEEEEE
T ss_pred HHHHhCCCCEEEEeCCCC-CHHHHHHHHHHHHhc--CCcEEEEE
Confidence 455567888999999987 344455565555444 44444443
|
| >3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B* | Back alignment and structure |
|---|
Probab=98.31 E-value=2.5e-06 Score=60.77 Aligned_cols=91 Identities=13% Similarity=0.077 Sum_probs=53.5
Q ss_pred EEEEEeCCCcccccc-ccccc-----cccccEEEEEEeCCChhhhhhHHHHHHHHhhhcCCCCEEEEEeCCCCCccccCH
Q 030504 63 RFYCWDTAGQEKFGG-LRDGY-----YIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKA 136 (176)
Q Consensus 63 ~~~~~D~~g~~~~~~-~~~~~-----~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~~~~~~~ 136 (176)
.+.++|++|...... ....+ ....|-.+++.|+... +.+......+.+. -....+++||.|... ...
T Consensus 213 d~vliDtaG~~~~~~~l~~eL~~i~ral~~de~llvLDa~t~---~~~~~~~~~~~~~--~~it~iilTKlD~~a--~~G 285 (328)
T 3e70_C 213 DVVLIDTAGRSETNRNLMDEMKKIARVTKPNLVIFVGDALAG---NAIVEQARQFNEA--VKIDGIILTKLDADA--RGG 285 (328)
T ss_dssp SEEEEEECCSCCTTTCHHHHHHHHHHHHCCSEEEEEEEGGGT---THHHHHHHHHHHH--SCCCEEEEECGGGCS--CCH
T ss_pred hhhHHhhccchhHHHHHHHHHHHHHHHhcCCCCEEEEecHHH---HHHHHHHHHHHHh--cCCCEEEEeCcCCcc--chh
Confidence 456789999643222 11111 1246888999997654 3333333444332 223467789998633 234
Q ss_pred HHHHHHHHcCCeEEEeccCCCCChHH
Q 030504 137 KQVTFHRKKNLQYYEISAKSNYNFEK 162 (176)
Q Consensus 137 ~~~~~~~~~~~~~~~~S~~~~~~v~~ 162 (176)
.........+.++..++ +|+++++
T Consensus 286 ~~l~~~~~~~~pi~~i~--~Ge~v~d 309 (328)
T 3e70_C 286 AALSISYVIDAPILFVG--VGQGYDD 309 (328)
T ss_dssp HHHHHHHHHTCCEEEEE--CSSSTTC
T ss_pred HHHHHHHHHCCCEEEEe--CCCCccc
Confidence 45677777888888876 7777654
|
| >3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B | Back alignment and structure |
|---|
Probab=98.26 E-value=1.6e-06 Score=66.78 Aligned_cols=20 Identities=20% Similarity=0.526 Sum_probs=18.2
Q ss_pred EEEEcCCCCcHHHHHHHHhc
Q 030504 16 LVIVGDGGTGKTTFVKRHLT 35 (176)
Q Consensus 16 i~i~G~~~~GKttl~~~~~~ 35 (176)
++|+|++|||||||++.+.+
T Consensus 48 iaIvG~nGsGKSTLL~~I~G 67 (608)
T 3szr_A 48 IAVIGDQSSGKSSVLEALSG 67 (608)
T ss_dssp EECCCCTTSCHHHHHHHHHS
T ss_pred EEEECCCCChHHHHHHHHhC
Confidence 99999999999999998554
|
| >2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9 | Back alignment and structure |
|---|
Probab=97.93 E-value=1.7e-05 Score=58.63 Aligned_cols=82 Identities=15% Similarity=0.145 Sum_probs=46.2
Q ss_pred EEEEEEEeCCCccccc-cccc-----cccccccEEEEEEeCCChhhhhhHHHHHHHHhhhcCCCC-EEEEEeCCCCCccc
Q 030504 61 KIRFYCWDTAGQEKFG-GLRD-----GYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIP-IVLCGNKVDVKNRQ 133 (176)
Q Consensus 61 ~~~~~~~D~~g~~~~~-~~~~-----~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p-~liv~nK~Dl~~~~ 133 (176)
.+.+.++||||..... .... .....++.+++|+|+... +........+.. ..+ .-+|+||.|...+.
T Consensus 183 ~~D~VIIDTpG~l~~~~~l~~~L~~~~~~~~p~~vllVvda~~g---~~~~~~~~~f~~---~l~i~gvVlnK~D~~~~~ 256 (433)
T 2xxa_A 183 FYDVLLVDTAGRLHVDEAMMDEIKQVHASINPVETLFVVDAMTG---QDAANTAKAFNE---ALPLTGVVLTKVDGDARG 256 (433)
T ss_dssp TCSEEEEECCCCCTTCHHHHHHHHHHHHHSCCSEEEEEEETTBC---TTHHHHHHHHHH---HSCCCCEEEECTTSSSCC
T ss_pred CCCEEEEECCCcccccHHHHHHHHHHHHhhcCcceeEEeecchh---HHHHHHHHHHhc---cCCCeEEEEecCCCCccH
Confidence 4578899999964322 1111 113367899999998754 233333333332 344 34688999986433
Q ss_pred cCHHHHHHHHHcCCeEE
Q 030504 134 VKAKQVTFHRKKNLQYY 150 (176)
Q Consensus 134 ~~~~~~~~~~~~~~~~~ 150 (176)
..........+.++.
T Consensus 257 --g~~l~i~~~~~~Pi~ 271 (433)
T 2xxa_A 257 --GAALSIRHITGKPIK 271 (433)
T ss_dssp --THHHHHHHHHCCCEE
T ss_pred --HHHHHHHHHHCCCeE
Confidence 234455555565533
|
| >4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A* | Back alignment and structure |
|---|
Probab=97.84 E-value=5.5e-06 Score=54.81 Aligned_cols=85 Identities=7% Similarity=-0.043 Sum_probs=54.2
Q ss_pred EEEEEEEeCCCccccccccccccccccEEEEEEeCCChhhhhhHHHHHHHHhhh---cCCCCEEEEEeCCCCCccccCHH
Q 030504 61 KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV---CENIPIVLCGNKVDVKNRQVKAK 137 (176)
Q Consensus 61 ~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~---~~~~p~liv~nK~Dl~~~~~~~~ 137 (176)
.+.+.++|+|+.. .......+..+|.++++...+... ..+...+..+.+. .++.++.+|.|+.|.... ...+
T Consensus 75 ~yD~viiD~~~~~--~~~~~~~l~~ad~viiv~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~vv~N~~~~~~~-~~~~ 149 (206)
T 4dzz_A 75 DYDFAIVDGAGSL--SVITSAAVMVSDLVIIPVTPSPLD--FSAAGSVVTVLEAQAYSRKVEARFLITRKIEMAT-MLNV 149 (206)
T ss_dssp TSSEEEEECCSSS--SHHHHHHHHHCSEEEEEECSCTTT--HHHHHHHHHHHTTSCGGGCCEEEEEECSBCTTEE-EEHH
T ss_pred CCCEEEEECCCCC--CHHHHHHHHHCCEEEEEecCCHHH--HHHHHHHHHHHHHHHhCCCCcEEEEEeccCCCch-HHHH
Confidence 3678899999865 334455667789999999887544 5555555555433 346778999999996543 2233
Q ss_pred HHHHHHHcCCeEE
Q 030504 138 QVTFHRKKNLQYY 150 (176)
Q Consensus 138 ~~~~~~~~~~~~~ 150 (176)
..+..+..+.+++
T Consensus 150 ~~~~l~~~~~~vl 162 (206)
T 4dzz_A 150 LKESIKDTGVKAF 162 (206)
T ss_dssp HHHHHHHHTCCBC
T ss_pred HHHHHHHcCCcee
Confidence 4444455554443
|
| >3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A* | Back alignment and structure |
|---|
Probab=97.81 E-value=3.3e-05 Score=57.17 Aligned_cols=26 Identities=19% Similarity=0.226 Sum_probs=22.2
Q ss_pred CCCeeEEEEEcCCCCcHHHHHHHHhc
Q 030504 10 DYPSFKLVIVGDGGTGKTTFVKRHLT 35 (176)
Q Consensus 10 ~~~~~~i~i~G~~~~GKttl~~~~~~ 35 (176)
+.+-.-|.|+|++++|||||+|++++
T Consensus 64 ~~~v~vVsV~G~~~~GKStLLN~llg 89 (447)
T 3q5d_A 64 DKEVVAVSVAGAFRKGKSFLMDFMLR 89 (447)
T ss_dssp TSBEEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCceEEEEEECCCCCcHHHHHHHHhh
Confidence 34566799999999999999999874
|
| >1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=97.75 E-value=1.7e-05 Score=51.53 Aligned_cols=20 Identities=50% Similarity=0.885 Sum_probs=18.2
Q ss_pred EEEEEcCCCCcHHHHHHHHh
Q 030504 15 KLVIVGDGGTGKTTFVKRHL 34 (176)
Q Consensus 15 ~i~i~G~~~~GKttl~~~~~ 34 (176)
+++++|++|+|||||++.+.
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~ 21 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIV 21 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 78999999999999999754
|
| >1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A | Back alignment and structure |
|---|
Probab=97.73 E-value=6.8e-06 Score=53.74 Aligned_cols=20 Identities=45% Similarity=0.813 Sum_probs=18.4
Q ss_pred EEEEcCCCCcHHHHHHHHhc
Q 030504 16 LVIVGDGGTGKTTFVKRHLT 35 (176)
Q Consensus 16 i~i~G~~~~GKttl~~~~~~ 35 (176)
|+|+|++|||||||+++++.
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~ 23 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFA 23 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 89999999999999999764
|
| >2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A | Back alignment and structure |
|---|
Probab=97.73 E-value=8.6e-05 Score=54.65 Aligned_cols=86 Identities=14% Similarity=0.075 Sum_probs=48.5
Q ss_pred EEEEEEEeCCCcccccc-ccc-----cccccccEEEEEEeCCChhhhhhHHHHHHHHhhhcCCCCEEEEEeCCCCCcccc
Q 030504 61 KIRFYCWDTAGQEKFGG-LRD-----GYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQV 134 (176)
Q Consensus 61 ~~~~~~~D~~g~~~~~~-~~~-----~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~~~~~ 134 (176)
.+.+.++||||...... ... .....++.+++|+|+... +........+... -...-+|.||.|...+.
T Consensus 180 ~~DvVIIDTaG~l~~d~~l~~el~~i~~~~~pd~vlLVvDa~tg---q~av~~a~~f~~~--l~i~GVIlTKlD~~~~~- 253 (425)
T 2ffh_A 180 ARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTG---QEALSVARAFDEK--VGVTGLVLTKLDGDARG- 253 (425)
T ss_dssp TCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGT---THHHHHHHHHHHH--TCCCEEEEESGGGCSSC-
T ss_pred CCCEEEEcCCCcccccHHHHHHHHHhhhccCCceEEEEEeccch---HHHHHHHHHHHhc--CCceEEEEeCcCCcccH-
Confidence 45688999999643211 111 112257889999998643 3333333333332 11245678999875432
Q ss_pred CHHHHHHHHHcCCeEEEec
Q 030504 135 KAKQVTFHRKKNLQYYEIS 153 (176)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~S 153 (176)
..........+.++..+.
T Consensus 254 -g~alsi~~~~g~PI~flg 271 (425)
T 2ffh_A 254 -GAALSARHVTGKPIYFAG 271 (425)
T ss_dssp -HHHHHHHHHHCCCEEEEE
T ss_pred -HHHHHHHHHHCCCEEEEe
Confidence 234556666788766654
|
| >1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=97.70 E-value=2.1e-05 Score=51.14 Aligned_cols=22 Identities=27% Similarity=0.492 Sum_probs=19.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 030504 14 FKLVIVGDGGTGKTTFVKRHLT 35 (176)
Q Consensus 14 ~~i~i~G~~~~GKttl~~~~~~ 35 (176)
--++|+|++|||||||++.+..
T Consensus 6 ~~i~i~GpsGsGKSTL~~~L~~ 27 (180)
T 1kgd_A 6 KTLVLLGAHGVGRRHIKNTLIT 27 (180)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 3689999999999999998654
|
| >3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP} | Back alignment and structure |
|---|
Probab=97.70 E-value=4.4e-05 Score=50.84 Aligned_cols=85 Identities=11% Similarity=0.002 Sum_probs=53.8
Q ss_pred EEEEEEEeCCCc-cccccccccccccccEEEEEEeCCChhhhhhHHHHHHHHhhhcCCCCEEEEEeCCCCCc-cccCHHH
Q 030504 61 KIRFYCWDTAGQ-EKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKN-RQVKAKQ 138 (176)
Q Consensus 61 ~~~~~~~D~~g~-~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~~-~~~~~~~ 138 (176)
.+.+.++|+|+. .. ......+..+|.++++...+ ..+...+...++.+.+.. +.++.+|.|+.|... .. ..+.
T Consensus 67 ~yD~viiD~p~~~~~--~~~~~~l~~aD~viiv~~~~-~~~~~~~~~~~~~l~~~~-~~~~~vv~N~~~~~~~~~-~~~~ 141 (209)
T 3cwq_A 67 KYQNIVIDTQARPED--EDLEALADGCDLLVIPSTPD-ALALDALMLTIETLQKLG-NNRFRILLTIIPPYPSKD-GDEA 141 (209)
T ss_dssp GCSEEEEEEECCCSS--SHHHHHHHTSSEEEEEECSS-HHHHHHHHHHHHHHHHTC-SSSEEEEECSBCCTTSCH-HHHH
T ss_pred cCCEEEEeCCCCcCc--HHHHHHHHHCCEEEEEecCC-chhHHHHHHHHHHHHhcc-CCCEEEEEEecCCccchH-HHHH
Confidence 456889999986 32 23445567889999988865 445555555555555422 567889999998764 22 2334
Q ss_pred HHHHHHcCCeEE
Q 030504 139 VTFHRKKNLQYY 150 (176)
Q Consensus 139 ~~~~~~~~~~~~ 150 (176)
.+..++.+.+++
T Consensus 142 ~~~l~~~g~~v~ 153 (209)
T 3cwq_A 142 RQLLTTAGLPLF 153 (209)
T ss_dssp HHHHHHTTCCBC
T ss_pred HHHHHHcCCchh
Confidence 444445555443
|
| >4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A* | Back alignment and structure |
|---|
Probab=97.66 E-value=2.4e-05 Score=50.45 Aligned_cols=20 Identities=45% Similarity=0.989 Sum_probs=17.7
Q ss_pred EEEEEcCCCCcHHHHHHHHh
Q 030504 15 KLVIVGDGGTGKTTFVKRHL 34 (176)
Q Consensus 15 ~i~i~G~~~~GKttl~~~~~ 34 (176)
-++++|++|||||||++.+.
T Consensus 11 i~~l~G~nGsGKSTl~~~~~ 30 (171)
T 4gp7_A 11 LVVLIGSSGSGKSTFAKKHF 30 (171)
T ss_dssp EEEEECCTTSCHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHc
Confidence 47899999999999999754
|
| >1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=97.65 E-value=2.7e-05 Score=51.43 Aligned_cols=22 Identities=32% Similarity=0.611 Sum_probs=19.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 030504 14 FKLVIVGDGGTGKTTFVKRHLT 35 (176)
Q Consensus 14 ~~i~i~G~~~~GKttl~~~~~~ 35 (176)
-.++|+|++|||||||++.+..
T Consensus 5 ~~i~lvGpsGaGKSTLl~~L~~ 26 (198)
T 1lvg_A 5 RPVVLSGPSGAGKSTLLKKLFQ 26 (198)
T ss_dssp CCEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 4689999999999999998654
|
| >1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25 | Back alignment and structure |
|---|
Probab=97.56 E-value=4.3e-05 Score=49.89 Aligned_cols=22 Identities=27% Similarity=0.437 Sum_probs=19.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 030504 14 FKLVIVGDGGTGKTTFVKRHLT 35 (176)
Q Consensus 14 ~~i~i~G~~~~GKttl~~~~~~ 35 (176)
-.++++|++|||||||++.+..
T Consensus 10 ~~i~l~G~~GsGKSTl~~~La~ 31 (191)
T 1zp6_A 10 NILLLSGHPGSGKSTIAEALAN 31 (191)
T ss_dssp EEEEEEECTTSCHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHh
Confidence 4699999999999999998654
|
| >1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8 | Back alignment and structure |
|---|
Probab=97.54 E-value=2e-05 Score=55.53 Aligned_cols=22 Identities=23% Similarity=0.412 Sum_probs=19.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 030504 14 FKLVIVGDGGTGKTTFVKRHLT 35 (176)
Q Consensus 14 ~~i~i~G~~~~GKttl~~~~~~ 35 (176)
-.++++|++|||||||+|.+..
T Consensus 174 ~~~~lvG~sG~GKSTLln~L~g 195 (307)
T 1t9h_A 174 KTTVFAGQSGVGKSSLLNAISP 195 (307)
T ss_dssp SEEEEEESHHHHHHHHHHHHCC
T ss_pred CEEEEECCCCCCHHHHHHHhcc
Confidence 4789999999999999998553
|
| >3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=97.54 E-value=4.6e-05 Score=50.33 Aligned_cols=21 Identities=29% Similarity=0.551 Sum_probs=18.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 030504 15 KLVIVGDGGTGKTTFVKRHLT 35 (176)
Q Consensus 15 ~i~i~G~~~~GKttl~~~~~~ 35 (176)
-++++|++|||||||++.+..
T Consensus 9 ii~l~Gp~GsGKSTl~~~L~~ 29 (205)
T 3tr0_A 9 LFIISAPSGAGKTSLVRALVK 29 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHh
Confidence 589999999999999998654
|
| >1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A | Back alignment and structure |
|---|
Probab=97.50 E-value=5.3e-05 Score=50.29 Aligned_cols=21 Identities=29% Similarity=0.409 Sum_probs=18.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 030504 15 KLVIVGDGGTGKTTFVKRHLT 35 (176)
Q Consensus 15 ~i~i~G~~~~GKttl~~~~~~ 35 (176)
-++|+|++|||||||++.+.+
T Consensus 22 i~~l~GpnGsGKSTLl~~l~g 42 (207)
T 1znw_A 22 VVVLSGPSAVGKSTVVRCLRE 42 (207)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 488999999999999998543
|
| >1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A* | Back alignment and structure |
|---|
Probab=97.50 E-value=5.5e-05 Score=50.79 Aligned_cols=22 Identities=18% Similarity=0.445 Sum_probs=19.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 030504 14 FKLVIVGDGGTGKTTFVKRHLT 35 (176)
Q Consensus 14 ~~i~i~G~~~~GKttl~~~~~~ 35 (176)
--++|+|++|||||||++.+..
T Consensus 17 ~ii~l~GpsGsGKSTLlk~L~g 38 (219)
T 1s96_A 17 TLYIVSAPSGAGKSSLIQALLK 38 (219)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhc
Confidence 3588999999999999998554
|
| >3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP} | Back alignment and structure |
|---|
Probab=97.50 E-value=7.5e-05 Score=49.60 Aligned_cols=24 Identities=21% Similarity=0.259 Sum_probs=20.5
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHh
Q 030504 11 YPSFKLVIVGDGGTGKTTFVKRHL 34 (176)
Q Consensus 11 ~~~~~i~i~G~~~~GKttl~~~~~ 34 (176)
.+...|+|+|++|||||||++.+.
T Consensus 20 ~~g~~v~I~G~sGsGKSTl~~~l~ 43 (208)
T 3c8u_A 20 PGRQLVALSGAPGSGKSTLSNPLA 43 (208)
T ss_dssp CSCEEEEEECCTTSCTHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHH
Confidence 455789999999999999999754
|
| >3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0 | Back alignment and structure |
|---|
Probab=97.50 E-value=8.1e-05 Score=49.04 Aligned_cols=24 Identities=25% Similarity=0.490 Sum_probs=20.2
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHhc
Q 030504 12 PSFKLVIVGDGGTGKTTFVKRHLT 35 (176)
Q Consensus 12 ~~~~i~i~G~~~~GKttl~~~~~~ 35 (176)
+.--|+|+|++|||||||++++..
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~ 41 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLS 41 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCEEEEECcCCCCHHHHHHHHHh
Confidence 444688999999999999999764
|
| >1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=97.48 E-value=5.8e-05 Score=50.60 Aligned_cols=22 Identities=45% Similarity=0.812 Sum_probs=18.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 030504 14 FKLVIVGDGGTGKTTFVKRHLT 35 (176)
Q Consensus 14 ~~i~i~G~~~~GKttl~~~~~~ 35 (176)
-.++|+|++|||||||++.+..
T Consensus 24 ~~~~lvGpsGsGKSTLl~~L~g 45 (218)
T 1z6g_A 24 YPLVICGPSGVGKGTLIKKLLN 45 (218)
T ss_dssp CCEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 3589999999999999998554
|
| >2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A | Back alignment and structure |
|---|
Probab=97.48 E-value=9.6e-05 Score=48.73 Aligned_cols=26 Identities=19% Similarity=0.340 Sum_probs=21.8
Q ss_pred CCCeeEEEEEcCCCCcHHHHHHHHhc
Q 030504 10 DYPSFKLVIVGDGGTGKTTFVKRHLT 35 (176)
Q Consensus 10 ~~~~~~i~i~G~~~~GKttl~~~~~~ 35 (176)
+.....|+|+|.+||||||+.+.+..
T Consensus 17 ~~~~~~I~l~G~~GsGKST~a~~La~ 42 (201)
T 2cdn_A 17 RGSHMRVLLLGPPGAGKGTQAVKLAE 42 (201)
T ss_dssp CCSCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 34567899999999999999998653
|
| >3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=97.45 E-value=9.5e-05 Score=49.13 Aligned_cols=25 Identities=24% Similarity=0.407 Sum_probs=20.4
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHhcC
Q 030504 12 PSFKLVIVGDGGTGKTTFVKRHLTG 36 (176)
Q Consensus 12 ~~~~i~i~G~~~~GKttl~~~~~~~ 36 (176)
+.--|+|+|++|||||||++.+...
T Consensus 7 ~g~~i~l~GpsGsGKsTl~~~L~~~ 31 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVREAVFKD 31 (208)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHS
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhh
Confidence 3346899999999999999986643
|
| >1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=97.43 E-value=0.00011 Score=47.42 Aligned_cols=22 Identities=23% Similarity=0.538 Sum_probs=19.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 030504 14 FKLVIVGDGGTGKTTFVKRHLT 35 (176)
Q Consensus 14 ~~i~i~G~~~~GKttl~~~~~~ 35 (176)
..|++.|++||||||+.+++..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 4689999999999999999765
|
| >2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax} | Back alignment and structure |
|---|
Probab=97.43 E-value=8.1e-05 Score=49.26 Aligned_cols=22 Identities=41% Similarity=0.677 Sum_probs=19.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 030504 14 FKLVIVGDGGTGKTTFVKRHLT 35 (176)
Q Consensus 14 ~~i~i~G~~~~GKttl~~~~~~ 35 (176)
.-|+|+|++|||||||++++..
T Consensus 13 ~~i~l~G~sGsGKsTl~~~L~~ 34 (204)
T 2qor_A 13 PPLVVCGPSGVGKGTLIKKVLS 34 (204)
T ss_dssp CCEEEECCTTSCHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999998654
|
| >2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A | Back alignment and structure |
|---|
Probab=97.42 E-value=9.6e-05 Score=50.38 Aligned_cols=22 Identities=36% Similarity=0.563 Sum_probs=19.7
Q ss_pred eeEEEEEcCCCCcHHHHHHHHh
Q 030504 13 SFKLVIVGDGGTGKTTFVKRHL 34 (176)
Q Consensus 13 ~~~i~i~G~~~~GKttl~~~~~ 34 (176)
.-.|+|+|++|||||||++.+.
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La 48 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIA 48 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 4579999999999999999865
|
| >1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2 | Back alignment and structure |
|---|
Probab=97.40 E-value=9e-05 Score=47.55 Aligned_cols=21 Identities=29% Similarity=0.460 Sum_probs=18.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHh
Q 030504 14 FKLVIVGDGGTGKTTFVKRHL 34 (176)
Q Consensus 14 ~~i~i~G~~~~GKttl~~~~~ 34 (176)
..|+++|++||||||+.+.+.
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La 25 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLA 25 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHH
Confidence 469999999999999999854
|
| >3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A* | Back alignment and structure |
|---|
Probab=97.40 E-value=8.8e-05 Score=50.33 Aligned_cols=23 Identities=26% Similarity=0.371 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCC
Q 030504 15 KLVIVGDGGTGKTTFVKRHLTGEF 38 (176)
Q Consensus 15 ~i~i~G~~~~GKttl~~~~~~~~~ 38 (176)
.++|+|++|||||||++. +.|-.
T Consensus 33 ~~~iiG~nGsGKSTLl~~-l~Gl~ 55 (235)
T 3tif_A 33 FVSIMGPSGSGKSTMLNI-IGCLD 55 (235)
T ss_dssp EEEEECSTTSSHHHHHHH-HTTSS
T ss_pred EEEEECCCCCcHHHHHHH-HhcCC
Confidence 489999999999999997 54544
|
| >1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A | Back alignment and structure |
|---|
Probab=97.39 E-value=9.5e-05 Score=46.99 Aligned_cols=22 Identities=41% Similarity=0.634 Sum_probs=19.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 030504 15 KLVIVGDGGTGKTTFVKRHLTG 36 (176)
Q Consensus 15 ~i~i~G~~~~GKttl~~~~~~~ 36 (176)
.++++|+.|+|||||++.+...
T Consensus 35 ~v~L~G~nGaGKTTLlr~l~g~ 56 (158)
T 1htw_A 35 MVYLNGDLGAGKTTLTRGMLQG 56 (158)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 5889999999999999986543
|
| >3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A | Back alignment and structure |
|---|
Probab=97.39 E-value=9.6e-05 Score=47.33 Aligned_cols=20 Identities=35% Similarity=0.519 Sum_probs=18.2
Q ss_pred eEEEEEcCCCCcHHHHHHHH
Q 030504 14 FKLVIVGDGGTGKTTFVKRH 33 (176)
Q Consensus 14 ~~i~i~G~~~~GKttl~~~~ 33 (176)
..|+++|++||||||+.+.+
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 36899999999999999986
|
| >1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A* | Back alignment and structure |
|---|
Probab=97.38 E-value=0.00016 Score=46.50 Aligned_cols=22 Identities=23% Similarity=0.410 Sum_probs=19.2
Q ss_pred eeEEEEEcCCCCcHHHHHHHHh
Q 030504 13 SFKLVIVGDGGTGKTTFVKRHL 34 (176)
Q Consensus 13 ~~~i~i~G~~~~GKttl~~~~~ 34 (176)
.-.|+++|++||||||+.+.+.
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~ 29 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVA 29 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHH
Confidence 4579999999999999999854
|
| >3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A* | Back alignment and structure |
|---|
Probab=97.38 E-value=0.00011 Score=47.05 Aligned_cols=20 Identities=15% Similarity=0.147 Sum_probs=18.3
Q ss_pred EEEEEcCCCCcHHHHHHHHh
Q 030504 15 KLVIVGDGGTGKTTFVKRHL 34 (176)
Q Consensus 15 ~i~i~G~~~~GKttl~~~~~ 34 (176)
.|+|+|++||||||+.+.+.
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~ 22 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLS 22 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 58999999999999999865
|
| >1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A* | Back alignment and structure |
|---|
Probab=97.37 E-value=0.00013 Score=46.99 Aligned_cols=22 Identities=18% Similarity=0.351 Sum_probs=19.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 030504 14 FKLVIVGDGGTGKTTFVKRHLT 35 (176)
Q Consensus 14 ~~i~i~G~~~~GKttl~~~~~~ 35 (176)
.-|+++|++||||||+.+.+..
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~ 25 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQS 25 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999998654
|
| >2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25 | Back alignment and structure |
|---|
Probab=97.37 E-value=9.9e-05 Score=48.14 Aligned_cols=20 Identities=40% Similarity=0.574 Sum_probs=18.1
Q ss_pred EEEEEcCCCCcHHHHHHHHh
Q 030504 15 KLVIVGDGGTGKTTFVKRHL 34 (176)
Q Consensus 15 ~i~i~G~~~~GKttl~~~~~ 34 (176)
-++++|++||||||+++.+.
T Consensus 4 ii~l~G~~GaGKSTl~~~L~ 23 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLA 23 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHh
Confidence 47899999999999999865
|
| >3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=97.37 E-value=0.00011 Score=48.50 Aligned_cols=22 Identities=23% Similarity=0.383 Sum_probs=19.4
Q ss_pred eeEEEEEcCCCCcHHHHHHHHh
Q 030504 13 SFKLVIVGDGGTGKTTFVKRHL 34 (176)
Q Consensus 13 ~~~i~i~G~~~~GKttl~~~~~ 34 (176)
...|+|+|.+||||||+++.+.
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~ 39 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIA 39 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 3579999999999999999865
|
| >2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=97.35 E-value=0.00013 Score=48.10 Aligned_cols=22 Identities=36% Similarity=0.572 Sum_probs=19.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 030504 14 FKLVIVGDGGTGKTTFVKRHLT 35 (176)
Q Consensus 14 ~~i~i~G~~~~GKttl~~~~~~ 35 (176)
..|+|+|++||||||+++.+..
T Consensus 7 ~~i~l~G~~GsGKSTl~~~L~~ 28 (207)
T 2j41_A 7 LLIVLSGPSGVGKGTVRKRIFE 28 (207)
T ss_dssp CEEEEECSTTSCHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999998654
|
| >2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A | Back alignment and structure |
|---|
Probab=97.34 E-value=0.00011 Score=49.43 Aligned_cols=23 Identities=30% Similarity=0.345 Sum_probs=19.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCC
Q 030504 15 KLVIVGDGGTGKTTFVKRHLTGEF 38 (176)
Q Consensus 15 ~i~i~G~~~~GKttl~~~~~~~~~ 38 (176)
.++++|++|||||||++. +.|-.
T Consensus 32 ~~~iiG~nGsGKSTLl~~-l~Gl~ 54 (224)
T 2pcj_A 32 FVSIIGASGSGKSTLLYI-LGLLD 54 (224)
T ss_dssp EEEEEECTTSCHHHHHHH-HTTSS
T ss_pred EEEEECCCCCCHHHHHHH-HhcCC
Confidence 478999999999999997 44544
|
| >3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A* | Back alignment and structure |
|---|
Probab=97.34 E-value=0.00014 Score=48.30 Aligned_cols=24 Identities=29% Similarity=0.429 Sum_probs=20.1
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHhc
Q 030504 12 PSFKLVIVGDGGTGKTTFVKRHLT 35 (176)
Q Consensus 12 ~~~~i~i~G~~~~GKttl~~~~~~ 35 (176)
+...|+|+|++|||||||++.+..
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~ 28 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALAR 28 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHH
Confidence 345799999999999999997543
|
| >3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus} | Back alignment and structure |
|---|
Probab=97.34 E-value=0.00012 Score=48.72 Aligned_cols=21 Identities=29% Similarity=0.528 Sum_probs=18.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHh
Q 030504 14 FKLVIVGDGGTGKTTFVKRHL 34 (176)
Q Consensus 14 ~~i~i~G~~~~GKttl~~~~~ 34 (176)
++|+|+|++||||||+.+.+.
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~ 21 (216)
T 3fb4_A 1 MNIVLMGLPGAGKGTQAEQII 21 (216)
T ss_dssp CEEEEECSTTSSHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 379999999999999999864
|
| >2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A* | Back alignment and structure |
|---|
Probab=97.34 E-value=0.00018 Score=47.69 Aligned_cols=23 Identities=26% Similarity=0.187 Sum_probs=20.3
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHh
Q 030504 12 PSFKLVIVGDGGTGKTTFVKRHL 34 (176)
Q Consensus 12 ~~~~i~i~G~~~~GKttl~~~~~ 34 (176)
+...|+|.|.+||||||+.+.+.
T Consensus 9 ~~~~I~l~G~~GsGKST~~~~L~ 31 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQSKLLV 31 (212)
T ss_dssp CSCEEEEEESTTSSHHHHHHHHH
T ss_pred cCCEEEEEcCCCCCHHHHHHHHH
Confidence 45689999999999999999865
|
| >4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP} | Back alignment and structure |
|---|
Probab=97.34 E-value=0.00012 Score=48.34 Aligned_cols=22 Identities=32% Similarity=0.505 Sum_probs=19.1
Q ss_pred eeEEEEEcCCCCcHHHHHHHHh
Q 030504 13 SFKLVIVGDGGTGKTTFVKRHL 34 (176)
Q Consensus 13 ~~~i~i~G~~~~GKttl~~~~~ 34 (176)
.-.|+|+|++||||||+++.+.
T Consensus 29 g~~i~l~G~~GsGKSTl~~~L~ 50 (200)
T 4eun_A 29 TRHVVVMGVSGSGKTTIAHGVA 50 (200)
T ss_dssp CCEEEEECCTTSCHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 3569999999999999999864
|
| >1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A* | Back alignment and structure |
|---|
Probab=97.33 E-value=0.00022 Score=46.97 Aligned_cols=23 Identities=22% Similarity=0.390 Sum_probs=20.0
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHh
Q 030504 12 PSFKLVIVGDGGTGKTTFVKRHL 34 (176)
Q Consensus 12 ~~~~i~i~G~~~~GKttl~~~~~ 34 (176)
....|+|.|.+||||||+.+.+.
T Consensus 14 ~~~~I~l~G~~GsGKsT~~~~L~ 36 (203)
T 1ukz_A 14 QVSVIFVLGGPGAGKGTQCEKLV 36 (203)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHH
Confidence 44679999999999999998865
|
| >1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A | Back alignment and structure |
|---|
Probab=97.33 E-value=0.00013 Score=47.41 Aligned_cols=22 Identities=27% Similarity=0.323 Sum_probs=19.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 030504 14 FKLVIVGDGGTGKTTFVKRHLT 35 (176)
Q Consensus 14 ~~i~i~G~~~~GKttl~~~~~~ 35 (176)
..|+|.|++||||||+.+.+..
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~ 25 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMD 25 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999998653
|
| >3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A* | Back alignment and structure |
|---|
Probab=97.32 E-value=0.00014 Score=48.55 Aligned_cols=21 Identities=38% Similarity=0.528 Sum_probs=18.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHh
Q 030504 14 FKLVIVGDGGTGKTTFVKRHL 34 (176)
Q Consensus 14 ~~i~i~G~~~~GKttl~~~~~ 34 (176)
++|+|+|++||||||+.+.+.
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~ 21 (216)
T 3dl0_A 1 MNLVLMGLPGAGKGTQGERIV 21 (216)
T ss_dssp CEEEEECSTTSSHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 379999999999999999864
|
| >1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=97.32 E-value=0.00015 Score=47.25 Aligned_cols=22 Identities=27% Similarity=0.490 Sum_probs=19.6
Q ss_pred eeEEEEEcCCCCcHHHHHHHHh
Q 030504 13 SFKLVIVGDGGTGKTTFVKRHL 34 (176)
Q Consensus 13 ~~~i~i~G~~~~GKttl~~~~~ 34 (176)
...|++.|.+||||||+.+.+.
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~ 24 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIV 24 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHH
Confidence 4679999999999999999865
|
| >3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=97.32 E-value=0.00014 Score=47.94 Aligned_cols=21 Identities=33% Similarity=0.490 Sum_probs=18.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHh
Q 030504 14 FKLVIVGDGGTGKTTFVKRHL 34 (176)
Q Consensus 14 ~~i~i~G~~~~GKttl~~~~~ 34 (176)
-.|+++|++||||||+.+.+.
T Consensus 26 ~~i~l~G~~GsGKsTl~~~La 46 (199)
T 3vaa_A 26 VRIFLTGYMGAGKTTLGKAFA 46 (199)
T ss_dssp CEEEEECCTTSCHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHH
Confidence 479999999999999999865
|
| >2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=97.31 E-value=0.00012 Score=47.89 Aligned_cols=21 Identities=29% Similarity=0.578 Sum_probs=18.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 030504 15 KLVIVGDGGTGKTTFVKRHLT 35 (176)
Q Consensus 15 ~i~i~G~~~~GKttl~~~~~~ 35 (176)
+++++|++|+|||||++.+..
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g 23 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASE 23 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHh
Confidence 589999999999999998553
|
| >2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=97.31 E-value=0.00014 Score=49.56 Aligned_cols=23 Identities=30% Similarity=0.622 Sum_probs=19.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCC
Q 030504 15 KLVIVGDGGTGKTTFVKRHLTGEF 38 (176)
Q Consensus 15 ~i~i~G~~~~GKttl~~~~~~~~~ 38 (176)
.++++|++|||||||++. +.|-.
T Consensus 26 ~~~liG~nGsGKSTLl~~-l~Gl~ 48 (240)
T 2onk_A 26 YCVLLGPTGAGKSVFLEL-IAGIV 48 (240)
T ss_dssp EEEEECCTTSSHHHHHHH-HHTSS
T ss_pred EEEEECCCCCCHHHHHHH-HhCCC
Confidence 478999999999999997 44543
|
| >1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=97.30 E-value=0.0002 Score=46.61 Aligned_cols=24 Identities=29% Similarity=0.508 Sum_probs=20.5
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHhc
Q 030504 12 PSFKLVIVGDGGTGKTTFVKRHLT 35 (176)
Q Consensus 12 ~~~~i~i~G~~~~GKttl~~~~~~ 35 (176)
...+|+++|.+||||||+.+.+..
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~~La~ 32 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAEMIAA 32 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 346799999999999999998654
|
| >3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=97.30 E-value=0.00016 Score=46.97 Aligned_cols=22 Identities=23% Similarity=0.297 Sum_probs=19.4
Q ss_pred eeEEEEEcCCCCcHHHHHHHHh
Q 030504 13 SFKLVIVGDGGTGKTTFVKRHL 34 (176)
Q Consensus 13 ~~~i~i~G~~~~GKttl~~~~~ 34 (176)
...|+++|++||||||+.+.+.
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La 26 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLA 26 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHH
Confidence 3479999999999999999865
|
| >2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus} | Back alignment and structure |
|---|
Probab=97.30 E-value=0.00018 Score=46.91 Aligned_cols=22 Identities=27% Similarity=0.410 Sum_probs=19.5
Q ss_pred eeEEEEEcCCCCcHHHHHHHHh
Q 030504 13 SFKLVIVGDGGTGKTTFVKRHL 34 (176)
Q Consensus 13 ~~~i~i~G~~~~GKttl~~~~~ 34 (176)
...|+++|.+||||||+.+.+.
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~ 26 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALA 26 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 4679999999999999999865
|
| >3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=97.30 E-value=0.0002 Score=46.51 Aligned_cols=23 Identities=26% Similarity=0.367 Sum_probs=20.1
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHh
Q 030504 12 PSFKLVIVGDGGTGKTTFVKRHL 34 (176)
Q Consensus 12 ~~~~i~i~G~~~~GKttl~~~~~ 34 (176)
....|+++|.+||||||+.+.+.
T Consensus 3 ~g~~I~l~G~~GsGKST~~~~La 25 (186)
T 3cm0_A 3 VGQAVIFLGPPGAGKGTQASRLA 25 (186)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHH
Confidence 34679999999999999999865
|
| >1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=97.29 E-value=0.00019 Score=47.25 Aligned_cols=27 Identities=22% Similarity=0.231 Sum_probs=21.8
Q ss_pred CCCCeeEEEEEcCCCCcHHHHHHHHhc
Q 030504 9 VDYPSFKLVIVGDGGTGKTTFVKRHLT 35 (176)
Q Consensus 9 ~~~~~~~i~i~G~~~~GKttl~~~~~~ 35 (176)
++.....|+|+|.+||||||+.+.+..
T Consensus 4 ~~~~~~~I~i~G~~GsGKST~~~~La~ 30 (203)
T 1uf9_A 4 EAKHPIIIGITGNIGSGKSTVAALLRS 30 (203)
T ss_dssp --CCCEEEEEEECTTSCHHHHHHHHHH
T ss_pred cccCceEEEEECCCCCCHHHHHHHHHH
Confidence 344567899999999999999998664
|
| >3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} | Back alignment and structure |
|---|
Probab=97.29 E-value=0.00014 Score=50.52 Aligned_cols=23 Identities=30% Similarity=0.619 Sum_probs=19.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCC
Q 030504 15 KLVIVGDGGTGKTTFVKRHLTGEF 38 (176)
Q Consensus 15 ~i~i~G~~~~GKttl~~~~~~~~~ 38 (176)
.++|+|++|||||||++. +.|-.
T Consensus 36 ~~~iiGpnGsGKSTLl~~-l~Gl~ 58 (275)
T 3gfo_A 36 VTAILGGNGVGKSTLFQN-FNGIL 58 (275)
T ss_dssp EEEEECCTTSSHHHHHHH-HTTSS
T ss_pred EEEEECCCCCCHHHHHHH-HHcCC
Confidence 389999999999999997 44543
|
| >1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=97.28 E-value=0.00015 Score=50.07 Aligned_cols=23 Identities=30% Similarity=0.541 Sum_probs=19.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCC
Q 030504 15 KLVIVGDGGTGKTTFVKRHLTGEF 38 (176)
Q Consensus 15 ~i~i~G~~~~GKttl~~~~~~~~~ 38 (176)
.++|+|++|||||||++. +.|-.
T Consensus 34 ~~~liG~nGsGKSTLlk~-l~Gl~ 56 (262)
T 1b0u_A 34 VISIIGSSGSGKSTFLRC-INFLE 56 (262)
T ss_dssp EEEEECCTTSSHHHHHHH-HTTSS
T ss_pred EEEEECCCCCCHHHHHHH-HhcCC
Confidence 478999999999999997 44543
|
| >1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A* | Back alignment and structure |
|---|
Probab=97.28 E-value=0.00017 Score=48.22 Aligned_cols=23 Identities=30% Similarity=0.498 Sum_probs=20.0
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhc
Q 030504 13 SFKLVIVGDGGTGKTTFVKRHLT 35 (176)
Q Consensus 13 ~~~i~i~G~~~~GKttl~~~~~~ 35 (176)
..+|+++|.+||||||+.+.+..
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~ 26 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQE 26 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999998643
|
| >3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=97.28 E-value=0.00021 Score=48.69 Aligned_cols=24 Identities=25% Similarity=0.365 Sum_probs=21.2
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHhc
Q 030504 12 PSFKLVIVGDGGTGKTTFVKRHLT 35 (176)
Q Consensus 12 ~~~~i~i~G~~~~GKttl~~~~~~ 35 (176)
+..+|+|.|++||||||+.+++..
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~ 51 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKK 51 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 567999999999999999998753
|
| >1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=97.28 E-value=0.00015 Score=48.42 Aligned_cols=23 Identities=30% Similarity=0.483 Sum_probs=19.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCC
Q 030504 15 KLVIVGDGGTGKTTFVKRHLTGEF 38 (176)
Q Consensus 15 ~i~i~G~~~~GKttl~~~~~~~~~ 38 (176)
.++++|++|+|||||++. +.|-.
T Consensus 37 ~~~iiG~NGsGKSTLlk~-l~Gl~ 59 (214)
T 1sgw_A 37 VVNFHGPNGIGKTTLLKT-ISTYL 59 (214)
T ss_dssp CEEEECCTTSSHHHHHHH-HTTSS
T ss_pred EEEEECCCCCCHHHHHHH-HhcCC
Confidence 478999999999999997 44544
|
| >2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V | Back alignment and structure |
|---|
Probab=97.28 E-value=0.00014 Score=52.25 Aligned_cols=22 Identities=23% Similarity=0.424 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 030504 15 KLVIVGDGGTGKTTFVKRHLTG 36 (176)
Q Consensus 15 ~i~i~G~~~~GKttl~~~~~~~ 36 (176)
.++++|++|||||||+|.+...
T Consensus 217 ~~~lvG~sG~GKSTLln~L~g~ 238 (358)
T 2rcn_A 217 ISIFAGQSGVGKSSLLNALLGL 238 (358)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCccHHHHHHHHhcc
Confidence 6899999999999999986643
|
| >1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A | Back alignment and structure |
|---|
Probab=97.27 E-value=0.00016 Score=46.71 Aligned_cols=22 Identities=36% Similarity=0.450 Sum_probs=19.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 030504 14 FKLVIVGDGGTGKTTFVKRHLT 35 (176)
Q Consensus 14 ~~i~i~G~~~~GKttl~~~~~~ 35 (176)
.-++++|++|+|||||+++++.
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~ 28 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIP 28 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHH
Confidence 3588999999999999999764
|
| >4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=97.27 E-value=0.00015 Score=50.10 Aligned_cols=23 Identities=35% Similarity=0.663 Sum_probs=18.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCC
Q 030504 15 KLVIVGDGGTGKTTFVKRHLTGEF 38 (176)
Q Consensus 15 ~i~i~G~~~~GKttl~~~~~~~~~ 38 (176)
.++++|++|||||||++.+ .|-.
T Consensus 39 ~~~liG~nGsGKSTLl~~l-~Gl~ 61 (266)
T 4g1u_C 39 MVAIIGPNGAGKSTLLRLL-TGYL 61 (266)
T ss_dssp EEEEECCTTSCHHHHHHHH-TSSS
T ss_pred EEEEECCCCCcHHHHHHHH-hcCC
Confidence 3889999999999999974 4443
|
| >2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=97.27 E-value=0.00017 Score=47.61 Aligned_cols=22 Identities=23% Similarity=0.357 Sum_probs=19.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 030504 14 FKLVIVGDGGTGKTTFVKRHLT 35 (176)
Q Consensus 14 ~~i~i~G~~~~GKttl~~~~~~ 35 (176)
.+|+|+|.+||||||+.+.+..
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 3799999999999999998654
|
| >2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.26 E-value=0.00017 Score=48.93 Aligned_cols=23 Identities=30% Similarity=0.596 Sum_probs=19.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCC
Q 030504 15 KLVIVGDGGTGKTTFVKRHLTGEF 38 (176)
Q Consensus 15 ~i~i~G~~~~GKttl~~~~~~~~~ 38 (176)
.++|+|++|||||||++. +.|-.
T Consensus 33 ~~~i~G~nGsGKSTLl~~-l~Gl~ 55 (237)
T 2cbz_A 33 LVAVVGQVGCGKSSLLSA-LLAEM 55 (237)
T ss_dssp EEEEECSTTSSHHHHHHH-HTTCS
T ss_pred EEEEECCCCCCHHHHHHH-HhcCC
Confidence 589999999999999997 44443
|
| >2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=97.26 E-value=0.00022 Score=47.23 Aligned_cols=23 Identities=17% Similarity=0.228 Sum_probs=20.1
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhc
Q 030504 13 SFKLVIVGDGGTGKTTFVKRHLT 35 (176)
Q Consensus 13 ~~~i~i~G~~~~GKttl~~~~~~ 35 (176)
...|+|.|.+||||||+++.+..
T Consensus 4 ~~~I~i~G~~GsGKsT~~~~L~~ 26 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQATLLKD 26 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHH
Confidence 46899999999999999998653
|
| >2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=97.26 E-value=0.00015 Score=49.92 Aligned_cols=22 Identities=23% Similarity=0.439 Sum_probs=19.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 030504 14 FKLVIVGDGGTGKTTFVKRHLT 35 (176)
Q Consensus 14 ~~i~i~G~~~~GKttl~~~~~~ 35 (176)
=.++|+|++|||||||++.+..
T Consensus 26 ~~v~i~Gp~GsGKSTll~~l~g 47 (261)
T 2eyu_A 26 GLILVTGPTGSGKSTTIASMID 47 (261)
T ss_dssp EEEEEECSTTCSHHHHHHHHHH
T ss_pred CEEEEECCCCccHHHHHHHHHH
Confidence 3689999999999999998553
|
| >3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A* | Back alignment and structure |
|---|
Probab=97.26 E-value=0.00018 Score=47.85 Aligned_cols=22 Identities=41% Similarity=0.528 Sum_probs=18.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 030504 14 FKLVIVGDGGTGKTTFVKRHLT 35 (176)
Q Consensus 14 ~~i~i~G~~~~GKttl~~~~~~ 35 (176)
.+|+++|+|||||+|...++..
T Consensus 1 M~Iil~GpPGsGKgTqa~~La~ 22 (206)
T 3sr0_A 1 MILVFLGPPGAGKGTQAKRLAK 22 (206)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999998653
|
| >1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=97.26 E-value=0.00017 Score=46.92 Aligned_cols=21 Identities=24% Similarity=0.340 Sum_probs=18.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 030504 15 KLVIVGDGGTGKTTFVKRHLT 35 (176)
Q Consensus 15 ~i~i~G~~~~GKttl~~~~~~ 35 (176)
.|+|.|.+||||||+++.+..
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~ 23 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKE 23 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999998653
|
| >1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A* | Back alignment and structure |
|---|
Probab=97.26 E-value=0.00016 Score=49.75 Aligned_cols=23 Identities=35% Similarity=0.696 Sum_probs=19.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCC
Q 030504 15 KLVIVGDGGTGKTTFVKRHLTGEF 38 (176)
Q Consensus 15 ~i~i~G~~~~GKttl~~~~~~~~~ 38 (176)
.++++|++|||||||++. +.|-.
T Consensus 35 ~~~liG~nGsGKSTLlk~-l~Gl~ 57 (257)
T 1g6h_A 35 VTLIIGPNGSGKSTLINV-ITGFL 57 (257)
T ss_dssp EEEEECSTTSSHHHHHHH-HTTSS
T ss_pred EEEEECCCCCCHHHHHHH-HhCCC
Confidence 488999999999999997 44443
|
| >2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=97.25 E-value=0.00029 Score=45.82 Aligned_cols=25 Identities=28% Similarity=0.286 Sum_probs=21.1
Q ss_pred CCCeeEEEEEcCCCCcHHHHHHHHh
Q 030504 10 DYPSFKLVIVGDGGTGKTTFVKRHL 34 (176)
Q Consensus 10 ~~~~~~i~i~G~~~~GKttl~~~~~ 34 (176)
..+...|+++|.+||||||+++.+.
T Consensus 10 ~~~~~~i~l~G~~GsGKsT~~~~L~ 34 (186)
T 2yvu_A 10 IEKGIVVWLTGLPGSGKTTIATRLA 34 (186)
T ss_dssp CSCCEEEEEECCTTSSHHHHHHHHH
T ss_pred cCCCcEEEEEcCCCCCHHHHHHHHH
Confidence 3456789999999999999999854
|
| >2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A* | Back alignment and structure |
|---|
Probab=97.24 E-value=0.00019 Score=49.11 Aligned_cols=23 Identities=35% Similarity=0.577 Sum_probs=19.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCC
Q 030504 15 KLVIVGDGGTGKTTFVKRHLTGEF 38 (176)
Q Consensus 15 ~i~i~G~~~~GKttl~~~~~~~~~ 38 (176)
.++|+|++|||||||++. +.|-.
T Consensus 37 ~~~i~G~nGsGKSTLl~~-l~Gl~ 59 (247)
T 2ff7_A 37 VIGIVGRSGSGKSTLTKL-IQRFY 59 (247)
T ss_dssp EEEEECSTTSSHHHHHHH-HTTSS
T ss_pred EEEEECCCCCCHHHHHHH-HhcCC
Confidence 488999999999999997 44443
|
| >1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=97.24 E-value=0.00019 Score=48.92 Aligned_cols=23 Identities=22% Similarity=0.359 Sum_probs=19.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCC
Q 030504 15 KLVIVGDGGTGKTTFVKRHLTGEF 38 (176)
Q Consensus 15 ~i~i~G~~~~GKttl~~~~~~~~~ 38 (176)
.++|+|++|+|||||++.+ .|-.
T Consensus 30 ~~~i~G~nGsGKSTLl~~l-~Gl~ 52 (243)
T 1mv5_A 30 IIAFAGPSGGGKSTIFSLL-ERFY 52 (243)
T ss_dssp EEEEECCTTSSHHHHHHHH-TTSS
T ss_pred EEEEECCCCCCHHHHHHHH-hcCC
Confidence 5899999999999999974 4443
|
| >1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B* | Back alignment and structure |
|---|
Probab=97.24 E-value=0.00025 Score=49.58 Aligned_cols=25 Identities=20% Similarity=0.345 Sum_probs=21.2
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHhc
Q 030504 11 YPSFKLVIVGDGGTGKTTFVKRHLT 35 (176)
Q Consensus 11 ~~~~~i~i~G~~~~GKttl~~~~~~ 35 (176)
....-|++.|++||||||+.+++..
T Consensus 31 ~~~~livl~G~sGsGKSTla~~L~~ 55 (287)
T 1gvn_B 31 ESPTAFLLGGQPGSGKTSLRSAIFE 55 (287)
T ss_dssp SSCEEEEEECCTTSCTHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3457899999999999999999753
|
| >2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A | Back alignment and structure |
|---|
Probab=97.24 E-value=0.00017 Score=48.66 Aligned_cols=23 Identities=35% Similarity=0.686 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCC
Q 030504 15 KLVIVGDGGTGKTTFVKRHLTGEF 38 (176)
Q Consensus 15 ~i~i~G~~~~GKttl~~~~~~~~~ 38 (176)
.++|+|++|+|||||++. +.|-.
T Consensus 36 ~~~i~G~nGsGKSTLl~~-l~Gl~ 58 (229)
T 2pze_A 36 LLAVAGSTGAGKTSLLMM-IMGEL 58 (229)
T ss_dssp EEEEECCTTSSHHHHHHH-HTTSS
T ss_pred EEEEECCCCCCHHHHHHH-HhCCC
Confidence 488999999999999997 44544
|
| >2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A* | Back alignment and structure |
|---|
Probab=97.24 E-value=0.00019 Score=47.18 Aligned_cols=21 Identities=33% Similarity=0.482 Sum_probs=18.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 030504 15 KLVIVGDGGTGKTTFVKRHLT 35 (176)
Q Consensus 15 ~i~i~G~~~~GKttl~~~~~~ 35 (176)
.|+|.|.+||||||+++.+..
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~ 22 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISK 22 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHH
Confidence 689999999999999998653
|
| >3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A* | Back alignment and structure |
|---|
Probab=97.24 E-value=0.00017 Score=47.52 Aligned_cols=23 Identities=22% Similarity=0.281 Sum_probs=19.6
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHh
Q 030504 12 PSFKLVIVGDGGTGKTTFVKRHL 34 (176)
Q Consensus 12 ~~~~i~i~G~~~~GKttl~~~~~ 34 (176)
+.-.|+++|++||||||+.+.+.
T Consensus 24 ~g~~i~l~G~sGsGKSTl~~~La 46 (200)
T 3uie_A 24 KGCVIWVTGLSGSGKSTLACALN 46 (200)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHH
Confidence 34579999999999999999854
|
| >2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A* | Back alignment and structure |
|---|
Probab=97.23 E-value=0.00018 Score=50.69 Aligned_cols=21 Identities=24% Similarity=0.377 Sum_probs=18.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHh
Q 030504 14 FKLVIVGDGGTGKTTFVKRHL 34 (176)
Q Consensus 14 ~~i~i~G~~~~GKttl~~~~~ 34 (176)
=.++|+|++|+|||||++.+.
T Consensus 127 e~vaIvGpsGsGKSTLl~lL~ 147 (305)
T 2v9p_A 127 NCLAFIGPPNTGKSMLCNSLI 147 (305)
T ss_dssp SEEEEECSSSSSHHHHHHHHH
T ss_pred CEEEEECCCCCcHHHHHHHHh
Confidence 368999999999999999855
|
| >3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A* | Back alignment and structure |
|---|
Probab=97.23 E-value=0.00014 Score=46.99 Aligned_cols=22 Identities=36% Similarity=0.486 Sum_probs=19.0
Q ss_pred eeEEEEEcCCCCcHHHHHHHHh
Q 030504 13 SFKLVIVGDGGTGKTTFVKRHL 34 (176)
Q Consensus 13 ~~~i~i~G~~~~GKttl~~~~~ 34 (176)
.-.++++|++|+|||||++.+.
T Consensus 38 g~~~~l~G~~G~GKTtL~~~i~ 59 (180)
T 3ec2_A 38 GKGLTFVGSPGVGKTHLAVATL 59 (180)
T ss_dssp CCEEEECCSSSSSHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHH
Confidence 3468999999999999999854
|
| >2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J* | Back alignment and structure |
|---|
Probab=97.23 E-value=0.00018 Score=49.67 Aligned_cols=23 Identities=35% Similarity=0.589 Sum_probs=19.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCC
Q 030504 15 KLVIVGDGGTGKTTFVKRHLTGEF 38 (176)
Q Consensus 15 ~i~i~G~~~~GKttl~~~~~~~~~ 38 (176)
.++|+|++|||||||++. +.|-.
T Consensus 52 i~~liG~NGsGKSTLlk~-l~Gl~ 74 (263)
T 2olj_A 52 VVVVIGPSGSGKSTFLRC-LNLLE 74 (263)
T ss_dssp EEEEECCTTSSHHHHHHH-HTTSS
T ss_pred EEEEEcCCCCcHHHHHHH-HHcCC
Confidence 478999999999999997 44544
|
| >1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A* | Back alignment and structure |
|---|
Probab=97.23 E-value=0.0002 Score=48.04 Aligned_cols=22 Identities=32% Similarity=0.382 Sum_probs=19.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 030504 14 FKLVIVGDGGTGKTTFVKRHLT 35 (176)
Q Consensus 14 ~~i~i~G~~~~GKttl~~~~~~ 35 (176)
..|+|+|++||||||+.+.+..
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~ 27 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAE 27 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999998653
|
| >3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A | Back alignment and structure |
|---|
Probab=97.22 E-value=0.00024 Score=45.87 Aligned_cols=23 Identities=30% Similarity=0.372 Sum_probs=19.8
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHh
Q 030504 12 PSFKLVIVGDGGTGKTTFVKRHL 34 (176)
Q Consensus 12 ~~~~i~i~G~~~~GKttl~~~~~ 34 (176)
....|+++|.+|+||||+.+.+.
T Consensus 10 ~~~~i~i~G~~GsGKst~~~~l~ 32 (180)
T 3iij_A 10 LLPNILLTGTPGVGKTTLGKELA 32 (180)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHH
T ss_pred cCCeEEEEeCCCCCHHHHHHHHH
Confidence 34579999999999999999865
|
| >1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A* | Back alignment and structure |
|---|
Probab=97.22 E-value=0.0002 Score=47.76 Aligned_cols=22 Identities=18% Similarity=0.370 Sum_probs=19.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 030504 14 FKLVIVGDGGTGKTTFVKRHLT 35 (176)
Q Consensus 14 ~~i~i~G~~~~GKttl~~~~~~ 35 (176)
.+|+|.|.+||||||+.+.+..
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~ 22 (214)
T 1e4v_A 1 MRIILLGAPVAGKGTQAQFIME 22 (214)
T ss_dssp CEEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3799999999999999998653
|
| >1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=97.22 E-value=0.00019 Score=48.88 Aligned_cols=23 Identities=30% Similarity=0.590 Sum_probs=19.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCC
Q 030504 15 KLVIVGDGGTGKTTFVKRHLTGEF 38 (176)
Q Consensus 15 ~i~i~G~~~~GKttl~~~~~~~~~ 38 (176)
.++++|++|+|||||++. +.|-.
T Consensus 34 ~~~l~G~nGsGKSTLl~~-l~Gl~ 56 (240)
T 1ji0_A 34 IVTLIGANGAGKTTTLSA-IAGLV 56 (240)
T ss_dssp EEEEECSTTSSHHHHHHH-HTTSS
T ss_pred EEEEECCCCCCHHHHHHH-HhCCC
Confidence 488999999999999997 44543
|
| >3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=97.21 E-value=0.00015 Score=48.26 Aligned_cols=21 Identities=24% Similarity=0.343 Sum_probs=18.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 030504 15 KLVIVGDGGTGKTTFVKRHLT 35 (176)
Q Consensus 15 ~i~i~G~~~~GKttl~~~~~~ 35 (176)
.++++|++|+|||||++.+.+
T Consensus 24 ~~~liG~nGsGKSTLl~~l~G 44 (208)
T 3b85_A 24 IVFGLGPAGSGKTYLAMAKAV 44 (208)
T ss_dssp EEEEECCTTSSTTHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 478999999999999998553
|
| >2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C | Back alignment and structure |
|---|
Probab=97.21 E-value=0.0002 Score=49.06 Aligned_cols=23 Identities=39% Similarity=0.686 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCC
Q 030504 15 KLVIVGDGGTGKTTFVKRHLTGEF 38 (176)
Q Consensus 15 ~i~i~G~~~~GKttl~~~~~~~~~ 38 (176)
.++++|++|+|||||++. +.|-.
T Consensus 28 ~~~liG~NGsGKSTLlk~-l~Gl~ 50 (249)
T 2qi9_C 28 ILHLVGPNGAGKSTLLAR-MAGMT 50 (249)
T ss_dssp EEEEECCTTSSHHHHHHH-HTTSS
T ss_pred EEEEECCCCCcHHHHHHH-HhCCC
Confidence 478999999999999997 55544
|
| >1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=97.21 E-value=0.0002 Score=49.26 Aligned_cols=23 Identities=26% Similarity=0.466 Sum_probs=19.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCC
Q 030504 15 KLVIVGDGGTGKTTFVKRHLTGEF 38 (176)
Q Consensus 15 ~i~i~G~~~~GKttl~~~~~~~~~ 38 (176)
.++|+|++|+|||||++. +.|-.
T Consensus 43 i~~l~G~NGsGKSTLlk~-l~Gl~ 65 (256)
T 1vpl_A 43 IFGLIGPNGAGKTTTLRI-ISTLI 65 (256)
T ss_dssp EEEEECCTTSSHHHHHHH-HTTSS
T ss_pred EEEEECCCCCCHHHHHHH-HhcCC
Confidence 488999999999999997 44443
|
| >1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=97.20 E-value=0.00024 Score=46.94 Aligned_cols=22 Identities=27% Similarity=0.421 Sum_probs=19.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 030504 14 FKLVIVGDGGTGKTTFVKRHLT 35 (176)
Q Consensus 14 ~~i~i~G~~~~GKttl~~~~~~ 35 (176)
+.|+++|++||||||+.+.+..
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999998654
|
| >2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} | Back alignment and structure |
|---|
Probab=97.19 E-value=0.00022 Score=49.10 Aligned_cols=23 Identities=30% Similarity=0.453 Sum_probs=19.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCC
Q 030504 15 KLVIVGDGGTGKTTFVKRHLTGEF 38 (176)
Q Consensus 15 ~i~i~G~~~~GKttl~~~~~~~~~ 38 (176)
.++|+|++|+|||||++.+ .|-.
T Consensus 48 ~~~i~G~nGsGKSTLl~~l-~Gl~ 70 (260)
T 2ghi_A 48 TCALVGHTGSGKSTIAKLL-YRFY 70 (260)
T ss_dssp EEEEECSTTSSHHHHHHHH-TTSS
T ss_pred EEEEECCCCCCHHHHHHHH-hccC
Confidence 5899999999999999974 4443
|
| >2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A* | Back alignment and structure |
|---|
Probab=97.19 E-value=0.00021 Score=48.98 Aligned_cols=20 Identities=30% Similarity=0.411 Sum_probs=17.7
Q ss_pred EEEEEcCCCCcHHHHHHHHh
Q 030504 15 KLVIVGDGGTGKTTFVKRHL 34 (176)
Q Consensus 15 ~i~i~G~~~~GKttl~~~~~ 34 (176)
.++|+|++|+|||||++.+.
T Consensus 31 ~~~l~G~nGsGKSTLlk~l~ 50 (250)
T 2d2e_A 31 VHALMGPNGAGKSTLGKILA 50 (250)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 48899999999999999744
|
| >2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A | Back alignment and structure |
|---|
Probab=97.18 E-value=0.00022 Score=49.34 Aligned_cols=20 Identities=30% Similarity=0.461 Sum_probs=17.7
Q ss_pred EEEEEcCCCCcHHHHHHHHh
Q 030504 15 KLVIVGDGGTGKTTFVKRHL 34 (176)
Q Consensus 15 ~i~i~G~~~~GKttl~~~~~ 34 (176)
.++|+|++|+|||||++.+.
T Consensus 48 ~~~l~G~NGsGKSTLlk~l~ 67 (267)
T 2zu0_C 48 VHAIMGPNGSGKSTLSATLA 67 (267)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 48899999999999999744
|
| >4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A* | Back alignment and structure |
|---|
Probab=97.18 E-value=0.0002 Score=48.01 Aligned_cols=21 Identities=24% Similarity=0.347 Sum_probs=18.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 030504 15 KLVIVGDGGTGKTTFVKRHLT 35 (176)
Q Consensus 15 ~i~i~G~~~~GKttl~~~~~~ 35 (176)
-++|+|++|+|||||++.+..
T Consensus 27 ~~~l~G~nGsGKSTll~~l~g 47 (231)
T 4a74_A 27 ITEVFGEFGSGKTQLAHTLAV 47 (231)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 488999999999999998654
|
| >1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2 | Back alignment and structure |
|---|
Probab=97.18 E-value=0.00021 Score=45.99 Aligned_cols=20 Identities=30% Similarity=0.546 Sum_probs=18.2
Q ss_pred EEEEEcCCCCcHHHHHHHHh
Q 030504 15 KLVIVGDGGTGKTTFVKRHL 34 (176)
Q Consensus 15 ~i~i~G~~~~GKttl~~~~~ 34 (176)
+|+|+|++||||||+.+.+.
T Consensus 6 ~i~i~G~~GsGKsTla~~La 25 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALA 25 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHH
Confidence 69999999999999999864
|
| >2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A* | Back alignment and structure |
|---|
Probab=97.18 E-value=0.00022 Score=49.48 Aligned_cols=23 Identities=30% Similarity=0.520 Sum_probs=19.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCC
Q 030504 15 KLVIVGDGGTGKTTFVKRHLTGEF 38 (176)
Q Consensus 15 ~i~i~G~~~~GKttl~~~~~~~~~ 38 (176)
.++|+|++|+|||||++. +.|-.
T Consensus 47 ~~~i~G~nGsGKSTLlk~-l~Gl~ 69 (271)
T 2ixe_A 47 VTALVGPNGSGKSTVAAL-LQNLY 69 (271)
T ss_dssp EEEEECSTTSSHHHHHHH-HTTSS
T ss_pred EEEEECCCCCCHHHHHHH-HhcCC
Confidence 488999999999999997 44443
|
| >2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=97.17 E-value=0.00024 Score=49.41 Aligned_cols=23 Identities=35% Similarity=0.478 Sum_probs=19.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCC
Q 030504 15 KLVIVGDGGTGKTTFVKRHLTGEF 38 (176)
Q Consensus 15 ~i~i~G~~~~GKttl~~~~~~~~~ 38 (176)
.++|+|++|+|||||++. +.|-.
T Consensus 49 ~~~liG~NGsGKSTLlk~-l~Gl~ 71 (279)
T 2ihy_A 49 KWILYGLNGAGKTTLLNI-LNAYE 71 (279)
T ss_dssp EEEEECCTTSSHHHHHHH-HTTSS
T ss_pred EEEEECCCCCcHHHHHHH-HhCCC
Confidence 488999999999999997 44443
|
| >1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6 | Back alignment and structure |
|---|
Probab=97.17 E-value=0.00038 Score=48.75 Aligned_cols=25 Identities=16% Similarity=0.203 Sum_probs=21.0
Q ss_pred CCCeeEEEEEcCCCCcHHHHHHHHh
Q 030504 10 DYPSFKLVIVGDGGTGKTTFVKRHL 34 (176)
Q Consensus 10 ~~~~~~i~i~G~~~~GKttl~~~~~ 34 (176)
..+...|+|+|++|||||||++.+.
T Consensus 28 ~~~~~ii~I~G~sGsGKSTla~~L~ 52 (290)
T 1odf_A 28 NKCPLFIFFSGPQGSGKSFTSIQIY 52 (290)
T ss_dssp CCSCEEEEEECCTTSSHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHH
Confidence 3456789999999999999998754
|
| >2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A* | Back alignment and structure |
|---|
Probab=97.17 E-value=0.00043 Score=45.78 Aligned_cols=24 Identities=33% Similarity=0.415 Sum_probs=20.5
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHhc
Q 030504 12 PSFKLVIVGDGGTGKTTFVKRHLT 35 (176)
Q Consensus 12 ~~~~i~i~G~~~~GKttl~~~~~~ 35 (176)
+...|+|+|.+||||||+++.+..
T Consensus 20 ~~~~i~i~G~~GsGKSTl~~~L~~ 43 (207)
T 2qt1_A 20 KTFIIGISGVTNSGKTTLAKNLQK 43 (207)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 446799999999999999998654
|
| >2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} | Back alignment and structure |
|---|
Probab=97.16 E-value=0.00023 Score=48.82 Aligned_cols=23 Identities=35% Similarity=0.628 Sum_probs=19.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCC
Q 030504 15 KLVIVGDGGTGKTTFVKRHLTGEF 38 (176)
Q Consensus 15 ~i~i~G~~~~GKttl~~~~~~~~~ 38 (176)
.++++|++|+|||||++. +.|-.
T Consensus 33 ~~~l~G~nGsGKSTLl~~-l~Gl~ 55 (253)
T 2nq2_C 33 ILAVLGQNGCGKSTLLDL-LLGIH 55 (253)
T ss_dssp EEEEECCSSSSHHHHHHH-HTTSS
T ss_pred EEEEECCCCCCHHHHHHH-HhCCC
Confidence 478999999999999997 54544
|
| >1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A* | Back alignment and structure |
|---|
Probab=97.16 E-value=0.00026 Score=47.57 Aligned_cols=22 Identities=36% Similarity=0.528 Sum_probs=19.6
Q ss_pred eeEEEEEcCCCCcHHHHHHHHh
Q 030504 13 SFKLVIVGDGGTGKTTFVKRHL 34 (176)
Q Consensus 13 ~~~i~i~G~~~~GKttl~~~~~ 34 (176)
...|+|+|.+||||||+.+.+.
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La 28 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRIT 28 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 3679999999999999999865
|
| >2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=97.16 E-value=0.00011 Score=47.29 Aligned_cols=20 Identities=45% Similarity=0.718 Sum_probs=18.0
Q ss_pred EEEEEcCCCCcHHHHHHHHh
Q 030504 15 KLVIVGDGGTGKTTFVKRHL 34 (176)
Q Consensus 15 ~i~i~G~~~~GKttl~~~~~ 34 (176)
.++|+|++|||||||++.+.
T Consensus 4 ~v~IvG~SGsGKSTL~~~L~ 23 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTLITRMM 23 (171)
T ss_dssp EEEEEESCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 58999999999999999855
|
| >2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=97.15 E-value=0.00023 Score=50.15 Aligned_cols=21 Identities=29% Similarity=0.627 Sum_probs=19.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHh
Q 030504 14 FKLVIVGDGGTGKTTFVKRHL 34 (176)
Q Consensus 14 ~~i~i~G~~~~GKttl~~~~~ 34 (176)
-.++++|++|+|||||+|.+.
T Consensus 166 ~i~~l~G~sG~GKSTLln~l~ 186 (302)
T 2yv5_A 166 FICILAGPSGVGKSSILSRLT 186 (302)
T ss_dssp CEEEEECSTTSSHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 458999999999999999977
|
| >3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum} | Back alignment and structure |
|---|
Probab=97.15 E-value=0.00014 Score=49.11 Aligned_cols=20 Identities=40% Similarity=0.566 Sum_probs=14.3
Q ss_pred EEEEEcCCCCcHHHHHHHHh
Q 030504 15 KLVIVGDGGTGKTTFVKRHL 34 (176)
Q Consensus 15 ~i~i~G~~~~GKttl~~~~~ 34 (176)
-++|+|++|||||||++.+.
T Consensus 29 ii~l~Gp~GsGKSTl~~~L~ 48 (231)
T 3lnc_A 29 ILVLSSPSGCGKTTVANKLL 48 (231)
T ss_dssp EEEEECSCC----CHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 58999999999999999866
|
| >2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=97.14 E-value=0.00024 Score=49.06 Aligned_cols=23 Identities=30% Similarity=0.665 Sum_probs=19.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCC
Q 030504 15 KLVIVGDGGTGKTTFVKRHLTGEF 38 (176)
Q Consensus 15 ~i~i~G~~~~GKttl~~~~~~~~~ 38 (176)
.++++|++|+|||||++. +.|-.
T Consensus 35 ~~~liG~nGsGKSTLl~~-i~Gl~ 57 (266)
T 2yz2_A 35 CLLVAGNTGSGKSTLLQI-VAGLI 57 (266)
T ss_dssp EEEEECSTTSSHHHHHHH-HTTSS
T ss_pred EEEEECCCCCcHHHHHHH-HhCCC
Confidence 488999999999999997 44443
|
| >1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1 | Back alignment and structure |
|---|
Probab=97.14 E-value=0.00025 Score=47.49 Aligned_cols=21 Identities=29% Similarity=0.344 Sum_probs=19.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHh
Q 030504 14 FKLVIVGDGGTGKTTFVKRHL 34 (176)
Q Consensus 14 ~~i~i~G~~~~GKttl~~~~~ 34 (176)
..|+|+|++||||||+.+.+.
T Consensus 6 ~~I~l~G~~GsGKsT~~~~La 26 (222)
T 1zak_A 6 LKVMISGAPASGKGTQCELIK 26 (222)
T ss_dssp CCEEEEESTTSSHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 579999999999999999865
|
| >2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A | Back alignment and structure |
|---|
Probab=97.14 E-value=0.00032 Score=45.85 Aligned_cols=23 Identities=26% Similarity=0.442 Sum_probs=19.9
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHh
Q 030504 12 PSFKLVIVGDGGTGKTTFVKRHL 34 (176)
Q Consensus 12 ~~~~i~i~G~~~~GKttl~~~~~ 34 (176)
+...|+++|.+||||||+.+.+.
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~La 30 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQCEKIV 30 (196)
T ss_dssp TSCEEEEEECTTSSHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHH
Confidence 34679999999999999999865
|
| >1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8 | Back alignment and structure |
|---|
Probab=97.14 E-value=0.00023 Score=50.09 Aligned_cols=21 Identities=19% Similarity=0.314 Sum_probs=18.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 030504 15 KLVIVGDGGTGKTTFVKRHLT 35 (176)
Q Consensus 15 ~i~i~G~~~~GKttl~~~~~~ 35 (176)
.++++|++|+|||||+|.+..
T Consensus 171 iv~l~G~sG~GKSTll~~l~g 191 (301)
T 1u0l_A 171 ISTMAGLSGVGKSSLLNAINP 191 (301)
T ss_dssp EEEEECSTTSSHHHHHHHHST
T ss_pred eEEEECCCCCcHHHHHHHhcc
Confidence 588999999999999998553
|
| >3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A* | Back alignment and structure |
|---|
Probab=97.13 E-value=0.00034 Score=49.50 Aligned_cols=24 Identities=21% Similarity=0.228 Sum_probs=20.5
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHh
Q 030504 11 YPSFKLVIVGDGGTGKTTFVKRHL 34 (176)
Q Consensus 11 ~~~~~i~i~G~~~~GKttl~~~~~ 34 (176)
.+..-|+|+|++|||||||++.+.
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~~L~ 111 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVLQ 111 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHH
T ss_pred CCCEEEEEECCCCchHHHHHHHHH
Confidence 455789999999999999999754
|
| >2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=97.12 E-value=0.00019 Score=46.38 Aligned_cols=22 Identities=32% Similarity=0.185 Sum_probs=15.5
Q ss_pred eeEEEEEcCCCCcHHHHHHHHh
Q 030504 13 SFKLVIVGDGGTGKTTFVKRHL 34 (176)
Q Consensus 13 ~~~i~i~G~~~~GKttl~~~~~ 34 (176)
...|++.|.+||||||+.+.+.
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La 26 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLH 26 (183)
T ss_dssp CCEEEEECCC----CHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 4579999999999999999864
|
| >2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A* | Back alignment and structure |
|---|
Probab=97.12 E-value=0.00035 Score=46.00 Aligned_cols=23 Identities=26% Similarity=0.234 Sum_probs=20.1
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhc
Q 030504 13 SFKLVIVGDGGTGKTTFVKRHLT 35 (176)
Q Consensus 13 ~~~i~i~G~~~~GKttl~~~~~~ 35 (176)
...|+|.|.+||||||+++.+..
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~ 26 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIME 26 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHH
Confidence 46799999999999999998654
|
| >2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=97.12 E-value=0.00031 Score=44.72 Aligned_cols=21 Identities=19% Similarity=0.203 Sum_probs=18.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 030504 15 KLVIVGDGGTGKTTFVKRHLT 35 (176)
Q Consensus 15 ~i~i~G~~~~GKttl~~~~~~ 35 (176)
+|++.|.+||||||+.+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSR 22 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 699999999999999998653
|
| >1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1 | Back alignment and structure |
|---|
Probab=97.11 E-value=0.00024 Score=51.39 Aligned_cols=22 Identities=23% Similarity=0.463 Sum_probs=19.3
Q ss_pred eeEEEEEcCCCCcHHHHHHHHh
Q 030504 13 SFKLVIVGDGGTGKTTFVKRHL 34 (176)
Q Consensus 13 ~~~i~i~G~~~~GKttl~~~~~ 34 (176)
.-+++|+|++|+|||||++.+.
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~ 191 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLA 191 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHH
T ss_pred hCeEEEECCCCCCHHHHHHHHH
Confidence 4589999999999999999744
|
| >2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=97.10 E-value=0.00032 Score=48.39 Aligned_cols=22 Identities=41% Similarity=0.789 Sum_probs=18.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 030504 15 KLVIVGDGGTGKTTFVKRHLTGE 37 (176)
Q Consensus 15 ~i~i~G~~~~GKttl~~~~~~~~ 37 (176)
.++++|++|+|||||++.+ .|-
T Consensus 32 ~~~i~G~NGsGKSTLlk~l-~Gl 53 (263)
T 2pjz_A 32 KVIILGPNGSGKTTLLRAI-SGL 53 (263)
T ss_dssp EEEEECCTTSSHHHHHHHH-TTS
T ss_pred EEEEECCCCCCHHHHHHHH-hCC
Confidence 5789999999999999974 444
|
| >2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.10 E-value=0.00067 Score=47.25 Aligned_cols=24 Identities=25% Similarity=0.387 Sum_probs=21.1
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHh
Q 030504 11 YPSFKLVIVGDGGTGKTTFVKRHL 34 (176)
Q Consensus 11 ~~~~~i~i~G~~~~GKttl~~~~~ 34 (176)
...+.|+|.|.+||||||+.+.+.
T Consensus 73 ~~~~iI~I~G~~GSGKSTva~~La 96 (281)
T 2f6r_A 73 SGLYVLGLTGISGSGKSSVAQRLK 96 (281)
T ss_dssp TTCEEEEEEECTTSCHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHH
Confidence 456789999999999999999865
|
| >2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A* | Back alignment and structure |
|---|
Probab=97.10 E-value=0.00037 Score=47.48 Aligned_cols=23 Identities=22% Similarity=0.476 Sum_probs=19.8
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhc
Q 030504 13 SFKLVIVGDGGTGKTTFVKRHLT 35 (176)
Q Consensus 13 ~~~i~i~G~~~~GKttl~~~~~~ 35 (176)
...|+|+|+.|||||||++.+..
T Consensus 25 g~iigI~G~~GsGKSTl~k~L~~ 47 (245)
T 2jeo_A 25 PFLIGVSGGTASGKSTVCEKIME 47 (245)
T ss_dssp SEEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 45699999999999999998654
|
| >4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis} | Back alignment and structure |
|---|
Probab=97.09 E-value=0.00042 Score=47.44 Aligned_cols=23 Identities=26% Similarity=0.323 Sum_probs=20.1
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHh
Q 030504 12 PSFKLVIVGDGGTGKTTFVKRHL 34 (176)
Q Consensus 12 ~~~~i~i~G~~~~GKttl~~~~~ 34 (176)
+...|+|+|++||||||+++.+.
T Consensus 26 ~g~~I~I~G~~GsGKSTl~k~La 48 (252)
T 4e22_A 26 IAPVITVDGPSGAGKGTLCKALA 48 (252)
T ss_dssp TSCEEEEECCTTSSHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHH
Confidence 34679999999999999999865
|
| >2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae} | Back alignment and structure |
|---|
Probab=97.08 E-value=0.00036 Score=47.81 Aligned_cols=24 Identities=25% Similarity=0.432 Sum_probs=20.7
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHh
Q 030504 11 YPSFKLVIVGDGGTGKTTFVKRHL 34 (176)
Q Consensus 11 ~~~~~i~i~G~~~~GKttl~~~~~ 34 (176)
.....|+++|++||||||+.+.+.
T Consensus 30 ~~~~~i~l~G~~GsGKSTla~~L~ 53 (253)
T 2p5t_B 30 KQPIAILLGGQSGAGKTTIHRIKQ 53 (253)
T ss_dssp SSCEEEEEESCGGGTTHHHHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHH
Confidence 345789999999999999999864
|
| >1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10 | Back alignment and structure |
|---|
Probab=97.08 E-value=0.00035 Score=44.84 Aligned_cols=22 Identities=27% Similarity=0.398 Sum_probs=19.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 030504 14 FKLVIVGDGGTGKTTFVKRHLT 35 (176)
Q Consensus 14 ~~i~i~G~~~~GKttl~~~~~~ 35 (176)
..+.++|.+|||||||+.++..
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~ 26 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVA 26 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 3588999999999999999663
|
| >2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A* | Back alignment and structure |
|---|
Probab=97.07 E-value=0.00036 Score=46.83 Aligned_cols=20 Identities=30% Similarity=0.396 Sum_probs=18.3
Q ss_pred EEEEEcCCCCcHHHHHHHHh
Q 030504 15 KLVIVGDGGTGKTTFVKRHL 34 (176)
Q Consensus 15 ~i~i~G~~~~GKttl~~~~~ 34 (176)
.|+|.|.+||||||+.+.+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~La 21 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVK 21 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 68999999999999999865
|
| >1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A* | Back alignment and structure |
|---|
Probab=97.07 E-value=0.0004 Score=46.05 Aligned_cols=23 Identities=22% Similarity=0.307 Sum_probs=20.2
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHh
Q 030504 12 PSFKLVIVGDGGTGKTTFVKRHL 34 (176)
Q Consensus 12 ~~~~i~i~G~~~~GKttl~~~~~ 34 (176)
+...|+|.|.+||||||+++.+.
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~L~ 30 (215)
T 1nn5_A 8 RGALIVLEGVDRAGKSTQSRKLV 30 (215)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHH
Confidence 34689999999999999999865
|
| >1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=97.07 E-value=0.00037 Score=45.05 Aligned_cols=23 Identities=30% Similarity=0.486 Sum_probs=19.6
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhc
Q 030504 13 SFKLVIVGDGGTGKTTFVKRHLT 35 (176)
Q Consensus 13 ~~~i~i~G~~~~GKttl~~~~~~ 35 (176)
.-.+++.|++|+|||+|++.+..
T Consensus 43 ~~~~ll~G~~G~GKT~l~~~~~~ 65 (195)
T 1jbk_A 43 KNNPVLIGEPGVGKTAIVEGLAQ 65 (195)
T ss_dssp SCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHH
Confidence 34689999999999999998654
|
| >3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A* | Back alignment and structure |
|---|
Probab=97.06 E-value=0.00022 Score=50.28 Aligned_cols=23 Identities=35% Similarity=0.624 Sum_probs=19.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCC
Q 030504 15 KLVIVGDGGTGKTTFVKRHLTGEF 38 (176)
Q Consensus 15 ~i~i~G~~~~GKttl~~~~~~~~~ 38 (176)
.++|+|++|+|||||++. +.|-+
T Consensus 82 ~vaivG~sGsGKSTLl~l-l~gl~ 104 (306)
T 3nh6_A 82 TLALVGPSGAGKSTILRL-LFRFY 104 (306)
T ss_dssp EEEEESSSCHHHHHHHHH-HTTSS
T ss_pred EEEEECCCCchHHHHHHH-HHcCC
Confidence 589999999999999997 44443
|
| >1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A* | Back alignment and structure |
|---|
Probab=97.06 E-value=0.00042 Score=46.81 Aligned_cols=23 Identities=26% Similarity=0.416 Sum_probs=20.1
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHh
Q 030504 12 PSFKLVIVGDGGTGKTTFVKRHL 34 (176)
Q Consensus 12 ~~~~i~i~G~~~~GKttl~~~~~ 34 (176)
...+|+|+|.+||||||+.+.+.
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~~La 37 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAPKLA 37 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHH
Confidence 44689999999999999999865
|
| >3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=97.06 E-value=0.0005 Score=48.79 Aligned_cols=24 Identities=21% Similarity=0.206 Sum_probs=20.6
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHh
Q 030504 11 YPSFKLVIVGDGGTGKTTFVKRHL 34 (176)
Q Consensus 11 ~~~~~i~i~G~~~~GKttl~~~~~ 34 (176)
..++-|+|+|++|||||||++.+.
T Consensus 90 ~~p~iigI~GpsGSGKSTl~~~L~ 113 (321)
T 3tqc_A 90 KVPYIIGIAGSVAVGKSTTSRVLK 113 (321)
T ss_dssp CCCEEEEEECCTTSSHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHH
Confidence 456789999999999999998753
|
| >1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A* | Back alignment and structure |
|---|
Probab=97.05 E-value=0.00055 Score=44.48 Aligned_cols=22 Identities=23% Similarity=0.351 Sum_probs=19.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 030504 14 FKLVIVGDGGTGKTTFVKRHLT 35 (176)
Q Consensus 14 ~~i~i~G~~~~GKttl~~~~~~ 35 (176)
..|++.|.+||||||+.+.+..
T Consensus 7 ~~I~l~G~~GsGKsT~~~~L~~ 28 (194)
T 1qf9_A 7 NVVFVLGGPGSGKGTQCANIVR 28 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999998653
|
| >2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A | Back alignment and structure |
|---|
Probab=97.04 E-value=0.00035 Score=47.91 Aligned_cols=20 Identities=25% Similarity=0.252 Sum_probs=17.9
Q ss_pred EEEEEcCCCCcHHHHHHHHh
Q 030504 15 KLVIVGDGGTGKTTFVKRHL 34 (176)
Q Consensus 15 ~i~i~G~~~~GKttl~~~~~ 34 (176)
-|+|+|++|||||||...+.
T Consensus 3 li~I~G~~GSGKSTla~~La 22 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIA 22 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHH
Confidence 47899999999999999865
|
| >3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae} | Back alignment and structure |
|---|
Probab=97.04 E-value=0.00034 Score=50.36 Aligned_cols=23 Identities=43% Similarity=0.644 Sum_probs=18.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCC
Q 030504 15 KLVIVGDGGTGKTTFVKRHLTGEF 38 (176)
Q Consensus 15 ~i~i~G~~~~GKttl~~~~~~~~~ 38 (176)
-++++|++|||||||++. +.|-.
T Consensus 32 ~~~llGpsGsGKSTLLr~-iaGl~ 54 (359)
T 3fvq_A 32 ILFIIGASGCGKTTLLRC-LAGFE 54 (359)
T ss_dssp EEEEEESTTSSHHHHHHH-HHTSS
T ss_pred EEEEECCCCchHHHHHHH-HhcCC
Confidence 378999999999999997 44443
|
| >2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B} | Back alignment and structure |
|---|
Probab=97.02 E-value=0.00027 Score=44.40 Aligned_cols=22 Identities=18% Similarity=0.445 Sum_probs=18.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 030504 14 FKLVIVGDGGTGKTTFVKRHLT 35 (176)
Q Consensus 14 ~~i~i~G~~~~GKttl~~~~~~ 35 (176)
-.++++|++|+|||+|++.+..
T Consensus 37 ~~~~l~G~~G~GKTtL~~~i~~ 58 (149)
T 2kjq_A 37 QFIYVWGEEGAGKSHLLQAWVA 58 (149)
T ss_dssp SEEEEESSSTTTTCHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3688999999999999998553
|
| >2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.02 E-value=0.00035 Score=48.47 Aligned_cols=19 Identities=32% Similarity=0.517 Sum_probs=17.7
Q ss_pred EEEEcCCCCcHHHHHHHHh
Q 030504 16 LVIVGDGGTGKTTFVKRHL 34 (176)
Q Consensus 16 i~i~G~~~~GKttl~~~~~ 34 (176)
++++|++|+|||||++.+.
T Consensus 47 vlL~Gp~GtGKTtLakala 65 (274)
T 2x8a_A 47 VLLAGPPGCGKTLLAKAVA 65 (274)
T ss_dssp EEEESSTTSCHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHH
Confidence 9999999999999999854
|
| >2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A* | Back alignment and structure |
|---|
Probab=97.02 E-value=0.0004 Score=48.61 Aligned_cols=23 Identities=35% Similarity=0.686 Sum_probs=19.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCC
Q 030504 15 KLVIVGDGGTGKTTFVKRHLTGEF 38 (176)
Q Consensus 15 ~i~i~G~~~~GKttl~~~~~~~~~ 38 (176)
.++|+|++|+|||||++. +.|-.
T Consensus 66 ~~~i~G~NGsGKSTLlk~-l~Gl~ 88 (290)
T 2bbs_A 66 LLAVAGSTGAGKTSLLMM-IMGEL 88 (290)
T ss_dssp EEEEEESTTSSHHHHHHH-HTTSS
T ss_pred EEEEECCCCCcHHHHHHH-HhcCC
Confidence 488999999999999997 44443
|
| >3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A* | Back alignment and structure |
|---|
Probab=97.02 E-value=0.00035 Score=50.33 Aligned_cols=21 Identities=29% Similarity=0.518 Sum_probs=18.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 030504 15 KLVIVGDGGTGKTTFVKRHLT 35 (176)
Q Consensus 15 ~i~i~G~~~~GKttl~~~~~~ 35 (176)
.++|+|++|||||||++.++.
T Consensus 125 ~i~I~GptGSGKTTlL~~l~g 145 (356)
T 3jvv_A 125 LVLVTGPTGSGKSTTLAAMLD 145 (356)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 799999999999999998653
|
| >1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A* | Back alignment and structure |
|---|
Probab=97.02 E-value=0.00047 Score=47.16 Aligned_cols=24 Identities=17% Similarity=0.401 Sum_probs=20.8
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHhc
Q 030504 12 PSFKLVIVGDGGTGKTTFVKRHLT 35 (176)
Q Consensus 12 ~~~~i~i~G~~~~GKttl~~~~~~ 35 (176)
..+.|+|.|.+||||||+.+.+..
T Consensus 21 ~~~iI~I~G~~GSGKST~a~~L~~ 44 (252)
T 1uj2_A 21 EPFLIGVSGGTASGKSSVCAKIVQ 44 (252)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999998654
|
| >1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6 | Back alignment and structure |
|---|
Probab=97.01 E-value=0.00055 Score=45.13 Aligned_cols=23 Identities=30% Similarity=0.277 Sum_probs=19.9
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHh
Q 030504 12 PSFKLVIVGDGGTGKTTFVKRHL 34 (176)
Q Consensus 12 ~~~~i~i~G~~~~GKttl~~~~~ 34 (176)
+..-|+|+|++||||||+++.+.
T Consensus 21 ~~~~i~i~G~~GsGKstl~~~l~ 43 (201)
T 1rz3_A 21 GRLVLGIDGLSRSGKTTLANQLS 43 (201)
T ss_dssp SSEEEEEEECTTSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHH
Confidence 44679999999999999999864
|
| >3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C | Back alignment and structure |
|---|
Probab=97.01 E-value=0.00039 Score=50.13 Aligned_cols=23 Identities=22% Similarity=0.368 Sum_probs=18.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCC
Q 030504 15 KLVIVGDGGTGKTTFVKRHLTGEF 38 (176)
Q Consensus 15 ~i~i~G~~~~GKttl~~~~~~~~~ 38 (176)
-++|+|++|||||||++. +.|-.
T Consensus 56 i~~IiGpnGaGKSTLlr~-i~GL~ 78 (366)
T 3tui_C 56 IYGVIGASGAGKSTLIRC-VNLLE 78 (366)
T ss_dssp EEEEECCTTSSHHHHHHH-HHTSS
T ss_pred EEEEEcCCCchHHHHHHH-HhcCC
Confidence 378999999999999997 44443
|
| >3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A* | Back alignment and structure |
|---|
Probab=97.01 E-value=0.00045 Score=46.72 Aligned_cols=24 Identities=25% Similarity=0.378 Sum_probs=20.0
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHh
Q 030504 11 YPSFKLVIVGDGGTGKTTFVKRHL 34 (176)
Q Consensus 11 ~~~~~i~i~G~~~~GKttl~~~~~ 34 (176)
...+.|+|.|++||||||+.+.+.
T Consensus 7 ~~~~~i~i~G~~GsGKsTla~~la 30 (233)
T 3r20_A 7 SGSLVVAVDGPAGTGKSSVSRGLA 30 (233)
T ss_dssp --CCEEEEECCTTSSHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHH
Confidence 356789999999999999999864
|
| >3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II} | Back alignment and structure |
|---|
Probab=97.00 E-value=0.00043 Score=46.20 Aligned_cols=21 Identities=29% Similarity=0.458 Sum_probs=19.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHh
Q 030504 14 FKLVIVGDGGTGKTTFVKRHL 34 (176)
Q Consensus 14 ~~i~i~G~~~~GKttl~~~~~ 34 (176)
.+|+++|.+||||||+.+.+.
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La 26 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIK 26 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 689999999999999999864
|
| >1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D* | Back alignment and structure |
|---|
Probab=97.00 E-value=0.00057 Score=48.15 Aligned_cols=84 Identities=10% Similarity=0.044 Sum_probs=46.6
Q ss_pred EEEEEeCCCcccccc------------ccccccccccEEEEEEeCCChhhhhhHHHHHHHHhhhcCCCCEEEEEeCCCCC
Q 030504 63 RFYCWDTAGQEKFGG------------LRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVK 130 (176)
Q Consensus 63 ~~~~~D~~g~~~~~~------------~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~ 130 (176)
...+.||+|...... ..++.....+.++++.|+..... +...+..+.+.. +. .++++||.|..
T Consensus 186 d~~llDt~G~~~~~~~~~~eLs~~r~~iaRal~~~P~~~lLvLDa~t~~~---~~~~~~~~~~~~-~~-t~iivTh~d~~ 260 (304)
T 1rj9_A 186 DLLFVDTAGRLHTKHNLMEELKKVKRAIAKADPEEPKEVWLVLDAVTGQN---GLEQAKKFHEAV-GL-TGVIVTKLDGT 260 (304)
T ss_dssp SEEEECCCCCCTTCHHHHHHHHHHHHHHHHHCTTCCSEEEEEEETTBCTH---HHHHHHHHHHHH-CC-SEEEEECTTSS
T ss_pred CEEEecCCCCCCchHHHHHHHHHHHHHHHHhhcCCCCeEEEEEcHHHHHH---HHHHHHHHHHHc-CC-cEEEEECCccc
Confidence 356889999532211 11223345777888999876532 223333333221 33 45667998865
Q ss_pred ccccCHHHHHHHHHcCCeEEEec
Q 030504 131 NRQVKAKQVTFHRKKNLQYYEIS 153 (176)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~S 153 (176)
.+ ...........+.++..++
T Consensus 261 a~--gg~~l~i~~~~~~pi~~ig 281 (304)
T 1rj9_A 261 AK--GGVLIPIVRTLKVPIKFVG 281 (304)
T ss_dssp CC--CTTHHHHHHHHCCCEEEEE
T ss_pred cc--ccHHHHHHHHHCCCeEEEe
Confidence 32 2344566666777776664
|
| >2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.99 E-value=0.00045 Score=45.20 Aligned_cols=23 Identities=26% Similarity=0.439 Sum_probs=19.8
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhc
Q 030504 13 SFKLVIVGDGGTGKTTFVKRHLT 35 (176)
Q Consensus 13 ~~~i~i~G~~~~GKttl~~~~~~ 35 (176)
...|++.|.+||||||+.+.+..
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~ 34 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVE 34 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999998653
|
| >4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A* | Back alignment and structure |
|---|
Probab=96.99 E-value=0.0019 Score=47.89 Aligned_cols=64 Identities=19% Similarity=0.235 Sum_probs=39.5
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHhc------------------CCCC---CccccceeEEEeEEEEEe---cCcEEEEEE
Q 030504 11 YPSFKLVIVGDGGTGKTTFVKRHLT------------------GEFE---KKYEPTIGVEVHPLDFFT---NCGKIRFYC 66 (176)
Q Consensus 11 ~~~~~i~i~G~~~~GKttl~~~~~~------------------~~~~---~~~~~~~~~~~~~~~~~~---~~~~~~~~~ 66 (176)
.+-.=|.|+|+.++|||+|+|.++. ..|. ....-|.|+-.....+.. ++....+.+
T Consensus 65 ~~v~vvsv~G~~~~gks~l~N~ll~~~~~~~~~~w~~~~~~~~~gF~~~~~~~~~TkGIWmw~~p~~~~~~~g~~~~vll 144 (457)
T 4ido_A 65 KEVVAVSVAGAFRKGKSFLMDFMLRYMYNQESVDWVGDYNEPLTGFSWRGGSERETTGIQIWSEIFLINKPDGKKVAVLL 144 (457)
T ss_dssp SBEEEEEEEEBTTSSHHHHHHHHHHHHHCTTCTTTTCCTTCCCCSSCCCCSSSCCCCSEEEESSCEEEECTTSCEEEEEE
T ss_pred CceEEEEEECCCCCchhHHHHHHHHHhhcccccccccccccCCCCceeCCCCCCcCceEEEecCcccccCCCCCeeEEEE
Confidence 3555677999999999999996541 1121 112224454433322222 456788999
Q ss_pred EeCCCccc
Q 030504 67 WDTAGQEK 74 (176)
Q Consensus 67 ~D~~g~~~ 74 (176)
+||.|...
T Consensus 145 lDTEG~~d 152 (457)
T 4ido_A 145 MDTQGTFD 152 (457)
T ss_dssp EEECCBTC
T ss_pred EeccCCCC
Confidence 99999643
|
| >1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius} | Back alignment and structure |
|---|
Probab=96.97 E-value=0.00043 Score=49.79 Aligned_cols=23 Identities=30% Similarity=0.472 Sum_probs=18.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCC
Q 030504 15 KLVIVGDGGTGKTTFVKRHLTGEF 38 (176)
Q Consensus 15 ~i~i~G~~~~GKttl~~~~~~~~~ 38 (176)
-++++|++|||||||++.+ .|-.
T Consensus 43 ~~~llGpnGsGKSTLLr~i-aGl~ 65 (355)
T 1z47_A 43 MVGLLGPSGSGKTTILRLI-AGLE 65 (355)
T ss_dssp EEEEECSTTSSHHHHHHHH-HTSS
T ss_pred EEEEECCCCCcHHHHHHHH-hCCC
Confidence 3789999999999999974 4443
|
| >1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A* | Back alignment and structure |
|---|
Probab=96.97 E-value=0.00043 Score=47.28 Aligned_cols=19 Identities=32% Similarity=0.592 Sum_probs=17.7
Q ss_pred EEEEcCCCCcHHHHHHHHh
Q 030504 16 LVIVGDGGTGKTTFVKRHL 34 (176)
Q Consensus 16 i~i~G~~~~GKttl~~~~~ 34 (176)
++++|++|+|||||++.+.
T Consensus 52 ~ll~G~~G~GKTtl~~~i~ 70 (254)
T 1ixz_A 52 VLLVGPPGVGKTHLARAVA 70 (254)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 9999999999999999855
|
| >3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=96.97 E-value=0.00043 Score=48.74 Aligned_cols=24 Identities=33% Similarity=0.407 Sum_probs=19.9
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHhc
Q 030504 12 PSFKLVIVGDGGTGKTTFVKRHLT 35 (176)
Q Consensus 12 ~~~~i~i~G~~~~GKttl~~~~~~ 35 (176)
+.--++++|++||||||+++.+..
T Consensus 99 ~g~vi~lvG~nGsGKTTll~~Lag 122 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTSLGKLAH 122 (302)
T ss_dssp SCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHH
Confidence 345789999999999999998543
|
| >2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=96.97 E-value=0.0005 Score=44.79 Aligned_cols=21 Identities=33% Similarity=0.431 Sum_probs=18.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 030504 15 KLVIVGDGGTGKTTFVKRHLT 35 (176)
Q Consensus 15 ~i~i~G~~~~GKttl~~~~~~ 35 (176)
.|++.|.+||||||+.+.+..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYE 22 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999998654
|
| >3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A | Back alignment and structure |
|---|
Probab=96.96 E-value=0.00045 Score=50.13 Aligned_cols=23 Identities=35% Similarity=0.517 Sum_probs=18.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCC
Q 030504 15 KLVIVGDGGTGKTTFVKRHLTGEF 38 (176)
Q Consensus 15 ~i~i~G~~~~GKttl~~~~~~~~~ 38 (176)
-++++|++|||||||++.+ .|-.
T Consensus 31 ~~~llGpsGsGKSTLLr~i-aGl~ 53 (381)
T 3rlf_A 31 FVVFVGPSGCGKSTLLRMI-AGLE 53 (381)
T ss_dssp EEEEECCTTSSHHHHHHHH-HTSS
T ss_pred EEEEEcCCCchHHHHHHHH-HcCC
Confidence 3789999999999999974 4443
|
| >2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A | Back alignment and structure |
|---|
Probab=96.96 E-value=0.00045 Score=49.25 Aligned_cols=20 Identities=35% Similarity=0.818 Sum_probs=18.1
Q ss_pred EEEEEcCCCCcHHHHHHHHh
Q 030504 15 KLVIVGDGGTGKTTFVKRHL 34 (176)
Q Consensus 15 ~i~i~G~~~~GKttl~~~~~ 34 (176)
.++|+|++|+|||||++.+.
T Consensus 173 ~v~i~G~~GsGKTTll~~l~ 192 (330)
T 2pt7_A 173 NVIVCGGTGSGKTTYIKSIM 192 (330)
T ss_dssp CEEEEESTTSCHHHHHHHGG
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 58999999999999999854
|
| >2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A* | Back alignment and structure |
|---|
Probab=96.95 E-value=0.00063 Score=43.88 Aligned_cols=24 Identities=25% Similarity=0.253 Sum_probs=20.1
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHhc
Q 030504 12 PSFKLVIVGDGGTGKTTFVKRHLT 35 (176)
Q Consensus 12 ~~~~i~i~G~~~~GKttl~~~~~~ 35 (176)
+...|+++|.+||||||+.+.+..
T Consensus 4 ~g~~i~l~G~~GsGKST~~~~L~~ 27 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVSMALEE 27 (179)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 346799999999999999998543
|
| >1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A* | Back alignment and structure |
|---|
Probab=96.95 E-value=0.0005 Score=43.98 Aligned_cols=21 Identities=29% Similarity=0.420 Sum_probs=18.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 030504 15 KLVIVGDGGTGKTTFVKRHLT 35 (176)
Q Consensus 15 ~i~i~G~~~~GKttl~~~~~~ 35 (176)
.|++.|.+||||||+.+.+..
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~ 24 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVGRELAR 24 (173)
T ss_dssp CEEEESCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 699999999999999998653
|
| >2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis} | Back alignment and structure |
|---|
Probab=96.95 E-value=0.00043 Score=49.98 Aligned_cols=21 Identities=38% Similarity=0.729 Sum_probs=18.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 030504 15 KLVIVGDGGTGKTTFVKRHLT 35 (176)
Q Consensus 15 ~i~i~G~~~~GKttl~~~~~~ 35 (176)
.++|+|++|+|||||++.+..
T Consensus 177 ~i~ivG~sGsGKSTll~~l~~ 197 (361)
T 2gza_A 177 VIVVAGETGSGKTTLMKALMQ 197 (361)
T ss_dssp CEEEEESSSSCHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 699999999999999998543
|
| >2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=96.95 E-value=0.00046 Score=49.71 Aligned_cols=23 Identities=30% Similarity=0.492 Sum_probs=18.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCC
Q 030504 15 KLVIVGDGGTGKTTFVKRHLTGEF 38 (176)
Q Consensus 15 ~i~i~G~~~~GKttl~~~~~~~~~ 38 (176)
-++++|++|||||||++.+ .|-.
T Consensus 31 ~~~llGpnGsGKSTLLr~i-aGl~ 53 (359)
T 2yyz_A 31 FVALLGPSGCGKTTTLLML-AGIY 53 (359)
T ss_dssp EEEEECSTTSSHHHHHHHH-HTSS
T ss_pred EEEEEcCCCchHHHHHHHH-HCCC
Confidence 4789999999999999974 4443
|
| >2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A* | Back alignment and structure |
|---|
Probab=96.95 E-value=0.00049 Score=44.58 Aligned_cols=21 Identities=43% Similarity=0.582 Sum_probs=18.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 030504 15 KLVIVGDGGTGKTTFVKRHLT 35 (176)
Q Consensus 15 ~i~i~G~~~~GKttl~~~~~~ 35 (176)
.|+|+|.+||||||+.+.+..
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~ 24 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAK 24 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 599999999999999998653
|
| >2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=96.94 E-value=0.00048 Score=49.71 Aligned_cols=23 Identities=26% Similarity=0.599 Sum_probs=18.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCC
Q 030504 15 KLVIVGDGGTGKTTFVKRHLTGEF 38 (176)
Q Consensus 15 ~i~i~G~~~~GKttl~~~~~~~~~ 38 (176)
-++++|++|||||||++.+ .|-.
T Consensus 31 ~~~llGpnGsGKSTLLr~i-aGl~ 53 (362)
T 2it1_A 31 FMALLGPSGSGKSTLLYTI-AGIY 53 (362)
T ss_dssp EEEEECCTTSSHHHHHHHH-HTSS
T ss_pred EEEEECCCCchHHHHHHHH-hcCC
Confidence 4789999999999999974 4443
|
| >1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A* | Back alignment and structure |
|---|
Probab=96.94 E-value=0.0007 Score=47.77 Aligned_cols=24 Identities=21% Similarity=0.286 Sum_probs=20.2
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHhc
Q 030504 12 PSFKLVIVGDGGTGKTTFVKRHLT 35 (176)
Q Consensus 12 ~~~~i~i~G~~~~GKttl~~~~~~ 35 (176)
+..-|+|+|++|||||||++.+..
T Consensus 79 ~g~iigI~G~~GsGKSTl~~~L~~ 102 (308)
T 1sq5_A 79 IPYIISIAGSVAVGKSTTARVLQA 102 (308)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 446799999999999999997543
|
| >1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A* | Back alignment and structure |
|---|
Probab=96.94 E-value=0.00017 Score=47.85 Aligned_cols=20 Identities=35% Similarity=0.522 Sum_probs=17.9
Q ss_pred EEEEEcCCCCcHHHHHHHHh
Q 030504 15 KLVIVGDGGTGKTTFVKRHL 34 (176)
Q Consensus 15 ~i~i~G~~~~GKttl~~~~~ 34 (176)
-|+|.|.+||||||+++.+.
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~ 21 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLS 21 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHH
Confidence 48999999999999999864
|
| >3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A* | Back alignment and structure |
|---|
Probab=96.94 E-value=0.00063 Score=46.77 Aligned_cols=22 Identities=32% Similarity=0.548 Sum_probs=19.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 030504 14 FKLVIVGDGGTGKTTFVKRHLT 35 (176)
Q Consensus 14 ~~i~i~G~~~~GKttl~~~~~~ 35 (176)
..|+++|.+||||||+.+.+..
T Consensus 5 ~lIvl~G~pGSGKSTla~~La~ 26 (260)
T 3a4m_A 5 MLIILTGLPGVGKSTFSKNLAK 26 (260)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEEcCCCCCHHHHHHHHHH
Confidence 4799999999999999998653
|
| >3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni} | Back alignment and structure |
|---|
Probab=96.93 E-value=0.00053 Score=45.87 Aligned_cols=20 Identities=25% Similarity=0.557 Sum_probs=16.9
Q ss_pred EEEEcCCCCcHHHHHHHHhc
Q 030504 16 LVIVGDGGTGKTTFVKRHLT 35 (176)
Q Consensus 16 i~i~G~~~~GKttl~~~~~~ 35 (176)
|+|+|+|||||+|...++..
T Consensus 32 I~llGpPGsGKgTqa~~L~~ 51 (217)
T 3umf_A 32 IFVLGGPGSGKGTQCEKLVQ 51 (217)
T ss_dssp EEEECCTTCCHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 56789999999999988553
|
| >2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A* | Back alignment and structure |
|---|
Probab=96.93 E-value=0.0005 Score=49.86 Aligned_cols=22 Identities=23% Similarity=0.439 Sum_probs=19.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 030504 14 FKLVIVGDGGTGKTTFVKRHLT 35 (176)
Q Consensus 14 ~~i~i~G~~~~GKttl~~~~~~ 35 (176)
-.++|+|++||||||+++.+..
T Consensus 137 ~~i~ivG~~GsGKTTll~~l~~ 158 (372)
T 2ewv_A 137 GLILVTGPTGSGKSTTIASMID 158 (372)
T ss_dssp EEEEEECSSSSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 3699999999999999998653
|
| >2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2} | Back alignment and structure |
|---|
Probab=96.92 E-value=0.00051 Score=46.00 Aligned_cols=21 Identities=33% Similarity=0.615 Sum_probs=18.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 030504 15 KLVIVGDGGTGKTTFVKRHLT 35 (176)
Q Consensus 15 ~i~i~G~~~~GKttl~~~~~~ 35 (176)
-++++|++|+|||||+..+..
T Consensus 25 ~~~i~G~~GsGKTtl~~~l~~ 45 (235)
T 2w0m_A 25 FIALTGEPGTGKTIFSLHFIA 45 (235)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 478999999999999998763
|
| >1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A* | Back alignment and structure |
|---|
Probab=96.92 E-value=0.00061 Score=43.46 Aligned_cols=21 Identities=29% Similarity=0.474 Sum_probs=18.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 030504 15 KLVIVGDGGTGKTTFVKRHLT 35 (176)
Q Consensus 15 ~i~i~G~~~~GKttl~~~~~~ 35 (176)
.|+|.|.+||||||+.+.+..
T Consensus 9 ~i~l~G~~GsGKSTva~~La~ 29 (168)
T 1zuh_A 9 HLVLIGFMGSGKSSLAQELGL 29 (168)
T ss_dssp EEEEESCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999998653
|
| >1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A | Back alignment and structure |
|---|
Probab=96.92 E-value=0.00072 Score=45.08 Aligned_cols=23 Identities=22% Similarity=0.446 Sum_probs=20.2
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhc
Q 030504 13 SFKLVIVGDGGTGKTTFVKRHLT 35 (176)
Q Consensus 13 ~~~i~i~G~~~~GKttl~~~~~~ 35 (176)
.+.|+|.|.+||||||+.+.+..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999998654
|
| >1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A* | Back alignment and structure |
|---|
Probab=96.91 E-value=0.00053 Score=49.66 Aligned_cols=20 Identities=40% Similarity=0.552 Sum_probs=17.6
Q ss_pred EEEEEcCCCCcHHHHHHHHh
Q 030504 15 KLVIVGDGGTGKTTFVKRHL 34 (176)
Q Consensus 15 ~i~i~G~~~~GKttl~~~~~ 34 (176)
-++++|++|||||||++.+.
T Consensus 39 ~~~llGpnGsGKSTLLr~ia 58 (372)
T 1v43_A 39 FLVLLGPSGCGKTTTLRMIA 58 (372)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHH
Confidence 47899999999999999744
|
| >1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A | Back alignment and structure |
|---|
Probab=96.91 E-value=0.00052 Score=49.72 Aligned_cols=23 Identities=30% Similarity=0.484 Sum_probs=18.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCC
Q 030504 15 KLVIVGDGGTGKTTFVKRHLTGEF 38 (176)
Q Consensus 15 ~i~i~G~~~~GKttl~~~~~~~~~ 38 (176)
-++++|++|||||||++.+ .|-.
T Consensus 31 ~~~llGpnGsGKSTLLr~i-aGl~ 53 (372)
T 1g29_1 31 FMILLGPSGCGKTTTLRMI-AGLE 53 (372)
T ss_dssp EEEEECSTTSSHHHHHHHH-HTSS
T ss_pred EEEEECCCCcHHHHHHHHH-HcCC
Confidence 3789999999999999974 4443
|
| >2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=96.87 E-value=0.00045 Score=44.49 Aligned_cols=23 Identities=30% Similarity=0.484 Sum_probs=19.5
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhc
Q 030504 13 SFKLVIVGDGGTGKTTFVKRHLT 35 (176)
Q Consensus 13 ~~~i~i~G~~~~GKttl~~~~~~ 35 (176)
.-.+++.|++|+|||+|++.+..
T Consensus 43 ~~~vll~G~~G~GKT~la~~~~~ 65 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIVEGLAI 65 (187)
T ss_dssp SCEEEEESCGGGCHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHH
Confidence 34689999999999999998654
|
| >2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1 | Back alignment and structure |
|---|
Probab=96.85 E-value=0.00058 Score=51.56 Aligned_cols=21 Identities=29% Similarity=0.529 Sum_probs=18.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 030504 15 KLVIVGDGGTGKTTFVKRHLT 35 (176)
Q Consensus 15 ~i~i~G~~~~GKttl~~~~~~ 35 (176)
.++|+|++||||||+++.++.
T Consensus 262 ~i~I~GptGSGKTTlL~aL~~ 282 (511)
T 2oap_1 262 SAIVVGETASGKTTTLNAIMM 282 (511)
T ss_dssp CEEEEESTTSSHHHHHHHHGG
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 599999999999999998553
|
| >1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A* | Back alignment and structure |
|---|
Probab=96.85 E-value=0.00058 Score=50.26 Aligned_cols=21 Identities=29% Similarity=0.506 Sum_probs=18.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 030504 15 KLVIVGDGGTGKTTFVKRHLT 35 (176)
Q Consensus 15 ~i~i~G~~~~GKttl~~~~~~ 35 (176)
-++|+|++|||||||++.++.
T Consensus 169 ii~I~GpnGSGKTTlL~allg 189 (418)
T 1p9r_A 169 IILVTGPTGSGKSTTLYAGLQ 189 (418)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHh
Confidence 589999999999999998654
|
| >1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A* | Back alignment and structure |
|---|
Probab=96.85 E-value=0.00059 Score=48.68 Aligned_cols=21 Identities=29% Similarity=0.476 Sum_probs=18.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 030504 15 KLVIVGDGGTGKTTFVKRHLT 35 (176)
Q Consensus 15 ~i~i~G~~~~GKttl~~~~~~ 35 (176)
.++++|++|+|||||++.+.+
T Consensus 53 ~~ll~Gp~G~GKTTLa~~ia~ 73 (334)
T 1in4_A 53 HVLLAGPPGLGKTTLAHIIAS 73 (334)
T ss_dssp CEEEESSTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHH
Confidence 489999999999999998553
|
| >1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=96.84 E-value=0.00064 Score=47.14 Aligned_cols=19 Identities=32% Similarity=0.592 Sum_probs=17.7
Q ss_pred EEEEcCCCCcHHHHHHHHh
Q 030504 16 LVIVGDGGTGKTTFVKRHL 34 (176)
Q Consensus 16 i~i~G~~~~GKttl~~~~~ 34 (176)
++++|++|+|||||++.+.
T Consensus 76 vll~Gp~GtGKTtl~~~i~ 94 (278)
T 1iy2_A 76 VLLVGPPGVGKTHLARAVA 94 (278)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEECCCcChHHHHHHHHH
Confidence 9999999999999999855
|
| >3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A | Back alignment and structure |
|---|
Probab=96.83 E-value=0.00072 Score=45.44 Aligned_cols=23 Identities=13% Similarity=0.231 Sum_probs=19.8
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhc
Q 030504 13 SFKLVIVGDGGTGKTTFVKRHLT 35 (176)
Q Consensus 13 ~~~i~i~G~~~~GKttl~~~~~~ 35 (176)
.-.+++.|++|+|||+|++.+..
T Consensus 52 ~~~~ll~G~~G~GKT~la~~l~~ 74 (242)
T 3bos_A 52 VQAIYLWGPVKSGRTHLIHAACA 74 (242)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999998653
|
| >3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X* | Back alignment and structure |
|---|
Probab=96.83 E-value=0.00071 Score=43.70 Aligned_cols=20 Identities=35% Similarity=0.483 Sum_probs=17.6
Q ss_pred EEEEEcCCCCcHHHHHHHHh
Q 030504 15 KLVIVGDGGTGKTTFVKRHL 34 (176)
Q Consensus 15 ~i~i~G~~~~GKttl~~~~~ 34 (176)
-.+|+|+.|+|||||+..+.
T Consensus 28 ~~~i~G~NGsGKStll~ai~ 47 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAIL 47 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHH
Confidence 46899999999999999864
|
| >2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A* | Back alignment and structure |
|---|
Probab=96.83 E-value=0.00094 Score=45.00 Aligned_cols=25 Identities=32% Similarity=0.585 Sum_probs=20.7
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHhc
Q 030504 11 YPSFKLVIVGDGGTGKTTFVKRHLT 35 (176)
Q Consensus 11 ~~~~~i~i~G~~~~GKttl~~~~~~ 35 (176)
.+..-|+|.|+.||||||+++.+..
T Consensus 18 ~~g~~i~i~G~~GsGKSTl~~~L~~ 42 (230)
T 2vp4_A 18 TQPFTVLIEGNIGSGKTTYLNHFEK 42 (230)
T ss_dssp CCCEEEEEECSTTSCHHHHHHTTGG
T ss_pred CCceEEEEECCCCCCHHHHHHHHHh
Confidence 3456799999999999999998543
|
| >1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A* | Back alignment and structure |
|---|
Probab=96.82 E-value=0.00063 Score=47.60 Aligned_cols=21 Identities=29% Similarity=0.632 Sum_probs=18.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 030504 15 KLVIVGDGGTGKTTFVKRHLT 35 (176)
Q Consensus 15 ~i~i~G~~~~GKttl~~~~~~ 35 (176)
-++|+|++|+|||||+..+..
T Consensus 37 ~~~i~G~~G~GKTTl~~~ia~ 57 (296)
T 1cr0_A 37 VIMVTSGSGMGKSTFVRQQAL 57 (296)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHH
Confidence 488999999999999998654
|
| >3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12 | Back alignment and structure |
|---|
Probab=96.82 E-value=0.00044 Score=49.64 Aligned_cols=23 Identities=39% Similarity=0.593 Sum_probs=18.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCC
Q 030504 15 KLVIVGDGGTGKTTFVKRHLTGEF 38 (176)
Q Consensus 15 ~i~i~G~~~~GKttl~~~~~~~~~ 38 (176)
-++++|++|||||||++.+ .|-.
T Consensus 28 ~~~llGpnGsGKSTLLr~i-aGl~ 50 (348)
T 3d31_A 28 YFVILGPTGAGKTLFLELI-AGFH 50 (348)
T ss_dssp EEEEECCCTHHHHHHHHHH-HTSS
T ss_pred EEEEECCCCccHHHHHHHH-HcCC
Confidence 4789999999999999974 4443
|
| >2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=96.82 E-value=0.00092 Score=43.86 Aligned_cols=24 Identities=25% Similarity=0.309 Sum_probs=21.1
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHhc
Q 030504 12 PSFKLVIVGDGGTGKTTFVKRHLT 35 (176)
Q Consensus 12 ~~~~i~i~G~~~~GKttl~~~~~~ 35 (176)
-++.|.++|..||||||+.+.+..
T Consensus 11 ~~~iIgltG~~GSGKSTva~~L~~ 34 (192)
T 2grj_A 11 HHMVIGVTGKIGTGKSTVCEILKN 34 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHH
Confidence 468899999999999999998654
|
| >3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=96.81 E-value=0.00066 Score=46.47 Aligned_cols=21 Identities=38% Similarity=0.365 Sum_probs=18.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHh
Q 030504 14 FKLVIVGDGGTGKTTFVKRHL 34 (176)
Q Consensus 14 ~~i~i~G~~~~GKttl~~~~~ 34 (176)
-+|+|+|++|+||||+.+.+.
T Consensus 49 ~~i~l~G~~GsGKSTl~~~La 69 (250)
T 3nwj_A 49 RSMYLVGMMGSGKTTVGKIMA 69 (250)
T ss_dssp CCEEEECSTTSCHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 479999999999999999864
|
| >3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.81 E-value=0.00068 Score=49.42 Aligned_cols=20 Identities=30% Similarity=0.669 Sum_probs=17.8
Q ss_pred EEEEEcCCCCcHHHHHHHHh
Q 030504 15 KLVIVGDGGTGKTTFVKRHL 34 (176)
Q Consensus 15 ~i~i~G~~~~GKttl~~~~~ 34 (176)
.++++|++|||||||++.+.
T Consensus 49 ~~~llGpsGsGKSTLLr~ia 68 (390)
T 3gd7_A 49 RVGLLGRTGSGKSTLLSAFL 68 (390)
T ss_dssp EEEEEESTTSSHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHh
Confidence 48999999999999999754
|
| >1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=96.81 E-value=0.00089 Score=45.79 Aligned_cols=21 Identities=38% Similarity=0.490 Sum_probs=18.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHh
Q 030504 14 FKLVIVGDGGTGKTTFVKRHL 34 (176)
Q Consensus 14 ~~i~i~G~~~~GKttl~~~~~ 34 (176)
-.+++.|++|+|||+|++.+.
T Consensus 46 ~~vll~G~~GtGKT~la~~la 66 (257)
T 1lv7_A 46 KGVLMVGPPGTGKTLLAKAIA 66 (257)
T ss_dssp CEEEEECCTTSCHHHHHHHHH
T ss_pred CeEEEECcCCCCHHHHHHHHH
Confidence 459999999999999999865
|
| >2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A* | Back alignment and structure |
|---|
Probab=96.80 E-value=0.00075 Score=44.84 Aligned_cols=21 Identities=24% Similarity=0.181 Sum_probs=19.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 030504 15 KLVIVGDGGTGKTTFVKRHLT 35 (176)
Q Consensus 15 ~i~i~G~~~~GKttl~~~~~~ 35 (176)
-++++|++|+|||||+..+..
T Consensus 22 ~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 22 LTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999775
|
| >2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=96.80 E-value=0.00071 Score=48.77 Aligned_cols=24 Identities=33% Similarity=0.407 Sum_probs=20.0
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHhc
Q 030504 12 PSFKLVIVGDGGTGKTTFVKRHLT 35 (176)
Q Consensus 12 ~~~~i~i~G~~~~GKttl~~~~~~ 35 (176)
+.--++++|++||||||++..+..
T Consensus 156 ~g~vi~lvG~nGsGKTTll~~Lag 179 (359)
T 2og2_A 156 KPAVIMIVGVNGGGKTTSLGKLAH 179 (359)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHh
Confidence 345799999999999999998543
|
| >2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426} | Back alignment and structure |
|---|
Probab=96.77 E-value=0.00089 Score=44.01 Aligned_cols=22 Identities=27% Similarity=0.276 Sum_probs=19.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 030504 14 FKLVIVGDGGTGKTTFVKRHLT 35 (176)
Q Consensus 14 ~~i~i~G~~~~GKttl~~~~~~ 35 (176)
-.+++.|++|+|||+|+..+..
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~ 76 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIAN 76 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999998653
|
| >1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=96.76 E-value=0.00084 Score=45.33 Aligned_cols=22 Identities=23% Similarity=0.190 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 030504 15 KLVIVGDGGTGKTTFVKRHLTG 36 (176)
Q Consensus 15 ~i~i~G~~~~GKttl~~~~~~~ 36 (176)
-++|+|++|+|||||+..+...
T Consensus 26 ~~~i~G~~GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 26 ITEMFGEFRTGKTQICHTLAVT 47 (243)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHH
Confidence 5889999999999999987653
|
| >1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1 | Back alignment and structure |
|---|
Probab=96.76 E-value=0.00061 Score=48.31 Aligned_cols=22 Identities=32% Similarity=0.454 Sum_probs=18.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 030504 15 KLVIVGDGGTGKTTFVKRHLTG 36 (176)
Q Consensus 15 ~i~i~G~~~~GKttl~~~~~~~ 36 (176)
-++|+|..|||||||++.++..
T Consensus 6 v~~i~G~~GaGKTTll~~l~~~ 27 (318)
T 1nij_A 6 VTLLTGFLGAGKTTLLRHILNE 27 (318)
T ss_dssp EEEEEESSSSSCHHHHHHHHHS
T ss_pred EEEEEecCCCCHHHHHHHHHhh
Confidence 4678999999999999997754
|
| >1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A* | Back alignment and structure |
|---|
Probab=96.76 E-value=0.0011 Score=43.96 Aligned_cols=23 Identities=17% Similarity=0.284 Sum_probs=19.5
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHh
Q 030504 12 PSFKLVIVGDGGTGKTTFVKRHL 34 (176)
Q Consensus 12 ~~~~i~i~G~~~~GKttl~~~~~ 34 (176)
+...|+++|.+|+||||+.+.+.
T Consensus 24 ~~~~i~~~G~~GsGKsT~~~~l~ 46 (211)
T 1m7g_A 24 RGLTIWLTGLSASGKSTLAVELE 46 (211)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHH
Confidence 34579999999999999999854
|
| >2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A | Back alignment and structure |
|---|
Probab=96.75 E-value=0.00079 Score=50.45 Aligned_cols=92 Identities=13% Similarity=0.041 Sum_probs=50.1
Q ss_pred EEEEEEeCCCcccccc-cc------cc----c-cccccEEEEEEeCCChhhhhhHHHHHHHHhhhcCCCCEEEEEeCCCC
Q 030504 62 IRFYCWDTAGQEKFGG-LR------DG----Y-YIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDV 129 (176)
Q Consensus 62 ~~~~~~D~~g~~~~~~-~~------~~----~-~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl 129 (176)
+.+.++||+|...... .. .. . ....+-+++|.|+.... +.......+... .+.. .+|+||.|-
T Consensus 376 ~DvVLIDTaGrl~~~~~lm~EL~kiv~iar~l~~~~P~evLLvLDattGq---~al~~ak~f~~~-~~it-gvIlTKLD~ 450 (503)
T 2yhs_A 376 IDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQ---NAVSQAKLFHEA-VGLT-GITLTKLDG 450 (503)
T ss_dssp CSEEEECCCCSCCCHHHHHHHHHHHHHHHHTTCTTCSSEEEEEEEGGGTH---HHHHHHHHHHHH-TCCS-EEEEECGGG
T ss_pred CCEEEEeCCCccchhhhHHHHHHHHHHHHHHhccCCCCeeEEEecCcccH---HHHHHHHHHHhh-cCCC-EEEEEcCCC
Confidence 4577899999642211 10 00 1 11256788899977542 222333333332 1333 456899985
Q ss_pred CccccCHHHHHHHHHcCCeEEEeccCCCCChHH
Q 030504 130 KNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEK 162 (176)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~ 162 (176)
. ........+....+.++.++ -+|+++++
T Consensus 451 t--akgG~~lsi~~~~~~PI~fi--g~Ge~vdD 479 (503)
T 2yhs_A 451 T--AKGGVIFSVADQFGIPIRYI--GVGERIED 479 (503)
T ss_dssp C--SCCTHHHHHHHHHCCCEEEE--ECSSSGGG
T ss_pred c--ccccHHHHHHHHHCCCEEEE--ecCCChhh
Confidence 3 23334567777778877764 45555544
|
| >4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A | Back alignment and structure |
|---|
Probab=96.74 E-value=0.0014 Score=44.23 Aligned_cols=23 Identities=30% Similarity=0.385 Sum_probs=20.1
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHh
Q 030504 12 PSFKLVIVGDGGTGKTTFVKRHL 34 (176)
Q Consensus 12 ~~~~i~i~G~~~~GKttl~~~~~ 34 (176)
+..-|++.|++||||||+++.+.
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~ 47 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVY 47 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHH
Confidence 45679999999999999999855
|
| >1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A | Back alignment and structure |
|---|
Probab=96.73 E-value=0.0011 Score=46.36 Aligned_cols=22 Identities=23% Similarity=0.538 Sum_probs=19.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 030504 14 FKLVIVGDGGTGKTTFVKRHLT 35 (176)
Q Consensus 14 ~~i~i~G~~~~GKttl~~~~~~ 35 (176)
..|+++|.+||||||+.+++..
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999998764
|
| >3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A | Back alignment and structure |
|---|
Probab=96.72 E-value=0.0013 Score=46.08 Aligned_cols=23 Identities=26% Similarity=0.267 Sum_probs=19.4
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHh
Q 030504 12 PSFKLVIVGDGGTGKTTFVKRHL 34 (176)
Q Consensus 12 ~~~~i~i~G~~~~GKttl~~~~~ 34 (176)
.+..+++.|+||+|||+|++.+.
T Consensus 35 ~p~~lLl~GppGtGKT~la~aiA 57 (293)
T 3t15_A 35 VPLILGIWGGKGQGKSFQCELVF 57 (293)
T ss_dssp CCSEEEEEECTTSCHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHH
Confidence 34678888999999999999855
|
| >3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A* | Back alignment and structure |
|---|
Probab=96.71 E-value=0.0013 Score=46.15 Aligned_cols=24 Identities=33% Similarity=0.584 Sum_probs=20.1
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHh
Q 030504 11 YPSFKLVIVGDGGTGKTTFVKRHL 34 (176)
Q Consensus 11 ~~~~~i~i~G~~~~GKttl~~~~~ 34 (176)
.....+++.|++|+|||++++.+.
T Consensus 65 ~~~~~vll~G~~GtGKT~la~~la 88 (309)
T 3syl_A 65 TPTLHMSFTGNPGTGKTTVALKMA 88 (309)
T ss_dssp CCCCEEEEEECTTSSHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHH
Confidence 345679999999999999998644
|
| >1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A* | Back alignment and structure |
|---|
Probab=96.70 E-value=0.00043 Score=49.80 Aligned_cols=23 Identities=39% Similarity=0.683 Sum_probs=19.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCC
Q 030504 15 KLVIVGDGGTGKTTFVKRHLTGEF 38 (176)
Q Consensus 15 ~i~i~G~~~~GKttl~~~~~~~~~ 38 (176)
-++++|++|||||||++. +.|-.
T Consensus 33 ~~~llGpnGsGKSTLLr~-iaGl~ 55 (353)
T 1oxx_K 33 RFGILGPSGAGKTTFMRI-IAGLD 55 (353)
T ss_dssp EEEEECSCHHHHHHHHHH-HHTSS
T ss_pred EEEEECCCCCcHHHHHHH-HhCCC
Confidence 478999999999999997 44543
|
| >3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A* | Back alignment and structure |
|---|
Probab=96.70 E-value=0.0018 Score=47.73 Aligned_cols=24 Identities=42% Similarity=0.628 Sum_probs=20.3
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHhc
Q 030504 12 PSFKLVIVGDGGTGKTTFVKRHLT 35 (176)
Q Consensus 12 ~~~~i~i~G~~~~GKttl~~~~~~ 35 (176)
...-|+++|.+||||||+.+++..
T Consensus 257 ~~~lIil~G~pGSGKSTla~~L~~ 280 (416)
T 3zvl_A 257 NPEVVVAVGFPGAGKSTFIQEHLV 280 (416)
T ss_dssp SCCEEEEESCTTSSHHHHHHHHTG
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 445689999999999999999654
|
| >2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A* | Back alignment and structure |
|---|
Probab=96.68 E-value=0.001 Score=47.72 Aligned_cols=22 Identities=27% Similarity=0.487 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 030504 15 KLVIVGDGGTGKTTFVKRHLTG 36 (176)
Q Consensus 15 ~i~i~G~~~~GKttl~~~~~~~ 36 (176)
+++|+|++|+|||||++.+.+.
T Consensus 73 ~~gIiG~nGaGKTTLl~~I~g~ 94 (347)
T 2obl_A 73 RIGIFAGSGVGKSTLLGMICNG 94 (347)
T ss_dssp EEEEEECTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999986544
|
| >3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A | Back alignment and structure |
|---|
Probab=96.68 E-value=0.0013 Score=46.57 Aligned_cols=22 Identities=18% Similarity=0.279 Sum_probs=19.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 030504 14 FKLVIVGDGGTGKTTFVKRHLT 35 (176)
Q Consensus 14 ~~i~i~G~~~~GKttl~~~~~~ 35 (176)
..|+|+|++|||||||...+..
T Consensus 6 ~~i~i~GptGsGKTtla~~La~ 27 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALAD 27 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999988653
|
| >2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.68 E-value=0.00084 Score=50.03 Aligned_cols=21 Identities=38% Similarity=0.624 Sum_probs=18.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 030504 15 KLVIVGDGGTGKTTFVKRHLT 35 (176)
Q Consensus 15 ~i~i~G~~~~GKttl~~~~~~ 35 (176)
.++|+|++|||||||++.+.+
T Consensus 140 ~v~IvGpnGsGKSTLlr~L~G 160 (460)
T 2npi_A 140 RVVIVGGSQTGKTSLSRTLCS 160 (460)
T ss_dssp CEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 689999999999999997543
|
| >3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli} | Back alignment and structure |
|---|
Probab=96.66 E-value=0.0012 Score=41.10 Aligned_cols=23 Identities=22% Similarity=0.277 Sum_probs=19.7
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhc
Q 030504 13 SFKLVIVGDGGTGKTTFVKRHLT 35 (176)
Q Consensus 13 ~~~i~i~G~~~~GKttl~~~~~~ 35 (176)
...|++.|++|+|||++++.+..
T Consensus 24 ~~~vll~G~~GtGKt~lA~~i~~ 46 (145)
T 3n70_A 24 DIAVWLYGAPGTGRMTGARYLHQ 46 (145)
T ss_dssp CSCEEEESSTTSSHHHHHHHHHH
T ss_pred CCCEEEECCCCCCHHHHHHHHHH
Confidence 35699999999999999998553
|
| >1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A* | Back alignment and structure |
|---|
Probab=96.63 E-value=0.0011 Score=44.37 Aligned_cols=21 Identities=24% Similarity=0.414 Sum_probs=18.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 030504 15 KLVIVGDGGTGKTTFVKRHLT 35 (176)
Q Consensus 15 ~i~i~G~~~~GKttl~~~~~~ 35 (176)
.++|.|++|+|||+|++.+..
T Consensus 47 ~~ll~G~~G~GKT~l~~~~~~ 67 (250)
T 1njg_A 47 AYLFSGTRGVGKTSIARLLAK 67 (250)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999998653
|
| >4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A* | Back alignment and structure |
|---|
Probab=96.63 E-value=0.0018 Score=45.49 Aligned_cols=24 Identities=29% Similarity=0.466 Sum_probs=20.3
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHhc
Q 030504 12 PSFKLVIVGDGGTGKTTFVKRHLT 35 (176)
Q Consensus 12 ~~~~i~i~G~~~~GKttl~~~~~~ 35 (176)
+.-.+++.|++|+|||++++.+..
T Consensus 46 ~~~~~ll~G~~GtGKt~la~~la~ 69 (311)
T 4fcw_A 46 PIGSFLFLGPTGVGKTELAKTLAA 69 (311)
T ss_dssp CSEEEEEESCSSSSHHHHHHHHHH
T ss_pred CceEEEEECCCCcCHHHHHHHHHH
Confidence 445799999999999999998654
|
| >1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A | Back alignment and structure |
|---|
Probab=96.61 E-value=0.0012 Score=45.90 Aligned_cols=21 Identities=24% Similarity=0.373 Sum_probs=18.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 030504 15 KLVIVGDGGTGKTTFVKRHLT 35 (176)
Q Consensus 15 ~i~i~G~~~~GKttl~~~~~~ 35 (176)
-++|+|++|+|||||+..+..
T Consensus 32 i~~i~G~~GsGKTtl~~~l~~ 52 (279)
T 1nlf_A 32 VGALVSPGGAGKSMLALQLAA 52 (279)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 488999999999999998764
|
| >2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.61 E-value=0.0015 Score=44.64 Aligned_cols=23 Identities=30% Similarity=0.387 Sum_probs=19.7
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhc
Q 030504 13 SFKLVIVGDGGTGKTTFVKRHLT 35 (176)
Q Consensus 13 ~~~i~i~G~~~~GKttl~~~~~~ 35 (176)
.-.+++.|++|+|||++++.+..
T Consensus 39 ~~~vll~G~~GtGKT~la~~la~ 61 (262)
T 2qz4_A 39 PKGALLLGPPGCGKTLLAKAVAT 61 (262)
T ss_dssp CCEEEEESCTTSSHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHH
Confidence 35699999999999999998653
|
| >3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=96.61 E-value=0.0014 Score=45.51 Aligned_cols=23 Identities=35% Similarity=0.446 Sum_probs=19.8
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhc
Q 030504 13 SFKLVIVGDGGTGKTTFVKRHLT 35 (176)
Q Consensus 13 ~~~i~i~G~~~~GKttl~~~~~~ 35 (176)
.-.+++.|++|+|||+|++.+..
T Consensus 51 ~~~~ll~G~~GtGKT~la~~la~ 73 (285)
T 3h4m_A 51 PKGILLYGPPGTGKTLLAKAVAT 73 (285)
T ss_dssp CSEEEEESSSSSSHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHH
Confidence 45699999999999999998653
|
| >2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=96.61 E-value=0.0012 Score=43.66 Aligned_cols=20 Identities=35% Similarity=0.401 Sum_probs=18.2
Q ss_pred EEEEcCCCCcHHHHHHHHhc
Q 030504 16 LVIVGDGGTGKTTFVKRHLT 35 (176)
Q Consensus 16 i~i~G~~~~GKttl~~~~~~ 35 (176)
+++.|++|+|||+++..+..
T Consensus 41 ~ll~G~~G~GKT~l~~~l~~ 60 (226)
T 2chg_A 41 LLFSGPPGTGKTATAIALAR 60 (226)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 99999999999999998654
|
| >1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A* | Back alignment and structure |
|---|
Probab=96.60 E-value=0.0013 Score=41.32 Aligned_cols=19 Identities=32% Similarity=0.705 Sum_probs=16.7
Q ss_pred EEEEcCCCCcHHHHHHHHh
Q 030504 16 LVIVGDGGTGKTTFVKRHL 34 (176)
Q Consensus 16 i~i~G~~~~GKttl~~~~~ 34 (176)
.+|+|+.|+|||||+.++.
T Consensus 26 ~~I~G~NGsGKStil~Ai~ 44 (149)
T 1f2t_A 26 NLIIGQNGSGKSSLLDAIL 44 (149)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 4789999999999999854
|
| >1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=96.59 E-value=0.0016 Score=44.05 Aligned_cols=26 Identities=23% Similarity=0.354 Sum_probs=21.2
Q ss_pred CCCeeEEEEEcCCCCcHHHHHHHHhc
Q 030504 10 DYPSFKLVIVGDGGTGKTTFVKRHLT 35 (176)
Q Consensus 10 ~~~~~~i~i~G~~~~GKttl~~~~~~ 35 (176)
..+...|+|+|.+|+||||+.+.+..
T Consensus 13 ~~~~~~i~i~G~~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 13 KMKTIQIAIDGPASSGKSTVAKIIAK 38 (236)
T ss_dssp -CCCCEEEEECSSCSSHHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHH
Confidence 34556899999999999999998653
|
| >1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A* | Back alignment and structure |
|---|
Probab=96.59 E-value=0.0021 Score=44.39 Aligned_cols=25 Identities=20% Similarity=0.355 Sum_probs=21.4
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHhc
Q 030504 11 YPSFKLVIVGDGGTGKTTFVKRHLT 35 (176)
Q Consensus 11 ~~~~~i~i~G~~~~GKttl~~~~~~ 35 (176)
.....+++.|++|+|||+++..+..
T Consensus 62 ~~~~~vLl~G~~GtGKT~la~~ia~ 86 (272)
T 1d2n_A 62 TPLVSVLLEGPPHSGKTALAAKIAE 86 (272)
T ss_dssp CSEEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHH
Confidence 4556899999999999999998654
|
| >1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ... | Back alignment and structure |
|---|
Probab=96.59 E-value=0.0013 Score=45.28 Aligned_cols=24 Identities=33% Similarity=0.324 Sum_probs=20.2
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHh
Q 030504 11 YPSFKLVIVGDGGTGKTTFVKRHL 34 (176)
Q Consensus 11 ~~~~~i~i~G~~~~GKttl~~~~~ 34 (176)
.+...|+|.|..||||||+++.+.
T Consensus 22 ~~~~~I~ieG~~GsGKST~~~~L~ 45 (263)
T 1p5z_B 22 TRIKKISIEGNIAAGKSTFVNILK 45 (263)
T ss_dssp -CCEEEEEECSTTSSHHHHHTTTG
T ss_pred cCceEEEEECCCCCCHHHHHHHHH
Confidence 355789999999999999999854
|
| >3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=96.58 E-value=0.0015 Score=45.67 Aligned_cols=24 Identities=33% Similarity=0.541 Sum_probs=20.4
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHhc
Q 030504 12 PSFKLVIVGDGGTGKTTFVKRHLT 35 (176)
Q Consensus 12 ~~~~i~i~G~~~~GKttl~~~~~~ 35 (176)
+.-.+++.|++|+|||++++.+..
T Consensus 53 ~~~~vll~Gp~GtGKT~la~~la~ 76 (297)
T 3b9p_A 53 PAKGLLLFGPPGNGKTLLARAVAT 76 (297)
T ss_dssp CCSEEEEESSSSSCHHHHHHHHHH
T ss_pred CCCeEEEECcCCCCHHHHHHHHHH
Confidence 346799999999999999998653
|
| >1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=96.57 E-value=0.0011 Score=43.78 Aligned_cols=21 Identities=33% Similarity=0.414 Sum_probs=18.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHh
Q 030504 14 FKLVIVGDGGTGKTTFVKRHL 34 (176)
Q Consensus 14 ~~i~i~G~~~~GKttl~~~~~ 34 (176)
-.+++.|+||+|||+++.++.
T Consensus 59 n~ili~GPPGtGKTt~a~ala 79 (212)
T 1tue_A 59 NCLVFCGPANTGKSYFGMSFI 79 (212)
T ss_dssp SEEEEESCGGGCHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 359999999999999988754
|
| >2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A* | Back alignment and structure |
|---|
Probab=96.57 E-value=0.0014 Score=43.13 Aligned_cols=25 Identities=24% Similarity=0.407 Sum_probs=20.8
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHhcC
Q 030504 12 PSFKLVIVGDGGTGKTTFVKRHLTG 36 (176)
Q Consensus 12 ~~~~i~i~G~~~~GKttl~~~~~~~ 36 (176)
....|+|+|++|+|||+|...+...
T Consensus 33 ~g~~ilI~GpsGsGKStLA~~La~~ 57 (205)
T 2qmh_A 33 YGLGVLITGDSGVGKSETALELVQR 57 (205)
T ss_dssp TTEEEEEECCCTTTTHHHHHHHHTT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHh
Confidence 3456999999999999999997643
|
| >2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=96.56 E-value=0.0014 Score=44.35 Aligned_cols=21 Identities=38% Similarity=0.620 Sum_probs=18.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 030504 15 KLVIVGDGGTGKTTFVKRHLT 35 (176)
Q Consensus 15 ~i~i~G~~~~GKttl~~~~~~ 35 (176)
-++++|++|+|||||+.++..
T Consensus 25 ~~~i~G~~GsGKTtl~~~~~~ 45 (247)
T 2dr3_A 25 VVLLSGGPGTGKTIFSQQFLW 45 (247)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999887654
|
| >3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B} | Back alignment and structure |
|---|
Probab=96.54 E-value=0.0016 Score=43.85 Aligned_cols=24 Identities=25% Similarity=0.397 Sum_probs=19.7
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHhc
Q 030504 12 PSFKLVIVGDGGTGKTTFVKRHLT 35 (176)
Q Consensus 12 ~~~~i~i~G~~~~GKttl~~~~~~ 35 (176)
-++++.++|++||||||+..++..
T Consensus 7 ~~~~~~~~G~pGsGKsT~a~~L~~ 30 (230)
T 3gmt_A 7 HHMRLILLGAPGAGKGTQANFIKE 30 (230)
T ss_dssp --CEEEEECCTTSCHHHHHHHHHH
T ss_pred cccceeeECCCCCCHHHHHHHHHH
Confidence 357899999999999999998643
|
| >3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=96.52 E-value=0.0017 Score=45.58 Aligned_cols=23 Identities=30% Similarity=0.356 Sum_probs=19.7
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhc
Q 030504 13 SFKLVIVGDGGTGKTTFVKRHLT 35 (176)
Q Consensus 13 ~~~i~i~G~~~~GKttl~~~~~~ 35 (176)
.-.+++.|++|+|||+|++.+..
T Consensus 49 ~~~vLL~Gp~GtGKT~la~ala~ 71 (301)
T 3cf0_A 49 SKGVLFYGPPGCGKTLLAKAIAN 71 (301)
T ss_dssp CSEEEEECSSSSSHHHHHHHHHH
T ss_pred CceEEEECCCCcCHHHHHHHHHH
Confidence 34699999999999999998653
|
| >1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6 | Back alignment and structure |
|---|
Probab=96.52 E-value=0.00088 Score=46.89 Aligned_cols=24 Identities=17% Similarity=0.256 Sum_probs=17.3
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHhc
Q 030504 12 PSFKLVIVGDGGTGKTTFVKRHLT 35 (176)
Q Consensus 12 ~~~~i~i~G~~~~GKttl~~~~~~ 35 (176)
+.+-|+|.|++||||||+.+.+..
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~ 27 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQ 27 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 345699999999999999998654
|
| >2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=96.50 E-value=0.0016 Score=48.29 Aligned_cols=22 Identities=14% Similarity=0.279 Sum_probs=19.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 030504 15 KLVIVGDGGTGKTTFVKRHLTG 36 (176)
Q Consensus 15 ~i~i~G~~~~GKttl~~~~~~~ 36 (176)
+++|+|++|+|||||++.+.+.
T Consensus 159 ~~~IvG~sGsGKSTLl~~Iag~ 180 (438)
T 2dpy_A 159 RMGLFAGSGVGKSVLLGMMARY 180 (438)
T ss_dssp EEEEEECTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 6899999999999999975543
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=96.49 E-value=0.0017 Score=49.46 Aligned_cols=23 Identities=52% Similarity=0.728 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCC
Q 030504 15 KLVIVGDGGTGKTTFVKRHLTGEF 38 (176)
Q Consensus 15 ~i~i~G~~~~GKttl~~~~~~~~~ 38 (176)
.++++|++|+|||||++. +.|..
T Consensus 49 ~~~LvG~NGaGKSTLlk~-l~Gl~ 71 (538)
T 1yqt_A 49 VVGIVGPNGTGKSTAVKI-LAGQL 71 (538)
T ss_dssp EEEEECCTTSSHHHHHHH-HHTSS
T ss_pred EEEEECCCCCCHHHHHHH-HhCCC
Confidence 589999999999999997 44443
|
| >3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae} | Back alignment and structure |
|---|
Probab=96.48 E-value=0.0013 Score=40.92 Aligned_cols=22 Identities=14% Similarity=0.264 Sum_probs=18.8
Q ss_pred eeEEEEEcCCCCcHHHHHHHHh
Q 030504 13 SFKLVIVGDGGTGKTTFVKRHL 34 (176)
Q Consensus 13 ~~~i~i~G~~~~GKttl~~~~~ 34 (176)
...|++.|++|+|||++++.+.
T Consensus 27 ~~~vll~G~~GtGKt~lA~~i~ 48 (143)
T 3co5_A 27 TSPVFLTGEAGSPFETVARYFH 48 (143)
T ss_dssp SSCEEEEEETTCCHHHHHGGGC
T ss_pred CCcEEEECCCCccHHHHHHHHH
Confidence 3469999999999999999743
|
| >3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A | Back alignment and structure |
|---|
Probab=96.48 E-value=0.0016 Score=49.99 Aligned_cols=23 Identities=30% Similarity=0.599 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCC
Q 030504 15 KLVIVGDGGTGKTTFVKRHLTGEF 38 (176)
Q Consensus 15 ~i~i~G~~~~GKttl~~~~~~~~~ 38 (176)
.++++|++|+|||||++. +.|-.
T Consensus 371 ~~~ivG~sGsGKSTLl~~-l~g~~ 393 (582)
T 3b60_A 371 TVALVGRSGSGKSTIASL-ITRFY 393 (582)
T ss_dssp EEEEEECTTSSHHHHHHH-HTTTT
T ss_pred EEEEECCCCCCHHHHHHH-Hhhcc
Confidence 589999999999999997 44443
|
| >3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A* | Back alignment and structure |
|---|
Probab=96.45 E-value=0.0016 Score=48.70 Aligned_cols=22 Identities=27% Similarity=0.472 Sum_probs=18.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 030504 14 FKLVIVGDGGTGKTTFVKRHLT 35 (176)
Q Consensus 14 ~~i~i~G~~~~GKttl~~~~~~ 35 (176)
=-++|+|++|+|||||++.+.+
T Consensus 30 e~~~liG~nGsGKSTLl~~l~G 51 (483)
T 3euj_A 30 LVTTLSGGNGAGKSTTMAGFVT 51 (483)
T ss_dssp SEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCcHHHHHHHHhc
Confidence 3578999999999999998653
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=96.44 E-value=0.0017 Score=49.40 Aligned_cols=21 Identities=38% Similarity=0.474 Sum_probs=18.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHh
Q 030504 14 FKLVIVGDGGTGKTTFVKRHL 34 (176)
Q Consensus 14 ~~i~i~G~~~~GKttl~~~~~ 34 (176)
=-++++|++|+|||||++.+.
T Consensus 26 ei~gLiGpNGaGKSTLlkiL~ 46 (538)
T 3ozx_A 26 TILGVLGKNGVGKTTVLKILA 46 (538)
T ss_dssp EEEEEECCTTSSHHHHHHHHT
T ss_pred CEEEEECCCCCcHHHHHHHHh
Confidence 358899999999999999744
|
| >1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A* | Back alignment and structure |
|---|
Probab=96.43 E-value=0.0026 Score=46.51 Aligned_cols=23 Identities=35% Similarity=0.699 Sum_probs=21.1
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHH
Q 030504 11 YPSFKLVIVGDGGTGKTTFVKRH 33 (176)
Q Consensus 11 ~~~~~i~i~G~~~~GKttl~~~~ 33 (176)
...+|++++|...|||||++.++
T Consensus 38 ~~~~klLLLG~geSGKSTi~KQm 60 (402)
T 1azs_C 38 RATHRLLLLGAGESGKSTIVKQM 60 (402)
T ss_dssp TTEEEEEEEESTTSSHHHHHHHH
T ss_pred hccceEEEecCCCCchhhHHHHH
Confidence 46899999999999999999985
|
| >1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A* | Back alignment and structure |
|---|
Probab=96.43 E-value=0.0017 Score=46.03 Aligned_cols=22 Identities=32% Similarity=0.410 Sum_probs=19.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 030504 14 FKLVIVGDGGTGKTTFVKRHLT 35 (176)
Q Consensus 14 ~~i~i~G~~~~GKttl~~~~~~ 35 (176)
-.+++.|++|+|||+|++.+..
T Consensus 38 ~~lll~G~~GtGKT~la~~i~~ 59 (324)
T 1l8q_A 38 NPIFIYGSVGTGKTHLLQAAGN 59 (324)
T ss_dssp SSEEEECSSSSSHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHH
Confidence 4689999999999999998653
|
| >2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A* | Back alignment and structure |
|---|
Probab=96.42 E-value=0.0018 Score=45.50 Aligned_cols=86 Identities=10% Similarity=0.055 Sum_probs=47.1
Q ss_pred EEEEEEEeCCCcccccc-cc---ccccc--cccEEEEEEeCCChhhhhhHHHHHHHHhhhcCCCCEEEEEeCCCCCcccc
Q 030504 61 KIRFYCWDTAGQEKFGG-LR---DGYYI--HGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQV 134 (176)
Q Consensus 61 ~~~~~~~D~~g~~~~~~-~~---~~~~~--~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~~~~~ 134 (176)
.+.+.++||+|...... .. ...+. ..+..++|+|.+.. .+.+..+...+.. -+ ..-+|.||.|.....
T Consensus 182 ~~dlvIiDT~G~~~~~~~~~~el~~~l~~~~~~~~~lVl~at~~--~~~~~~~~~~~~~--l~-~~giVltk~D~~~~~- 255 (296)
T 2px0_A 182 EYDHVFVDTAGRNFKDPQYIDELKETIPFESSIQSFLVLSATAK--YEDMKHIVKRFSS--VP-VNQYIFTKIDETTSL- 255 (296)
T ss_dssp GSSEEEEECCCCCTTSHHHHHHHHHHSCCCTTEEEEEEEETTBC--HHHHHHHTTTTSS--SC-CCEEEEECTTTCSCC-
T ss_pred CCCEEEEeCCCCChhhHHHHHHHHHHHhhcCCCeEEEEEECCCC--HHHHHHHHHHHhc--CC-CCEEEEeCCCcccch-
Confidence 35688999999654321 11 11122 35778889987643 1223222222211 12 234567999976432
Q ss_pred CHHHHHHHHHcCCeEEEec
Q 030504 135 KAKQVTFHRKKNLQYYEIS 153 (176)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~S 153 (176)
..........+.++..++
T Consensus 256 -g~~~~~~~~~~~pi~~i~ 273 (296)
T 2px0_A 256 -GSVFNILAESKIGVGFMT 273 (296)
T ss_dssp -HHHHHHHHTCSCCCSEEC
T ss_pred -hHHHHHHHHHCcCEEEEE
Confidence 355677777787766654
|
| >3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae} | Back alignment and structure |
|---|
Probab=96.40 E-value=0.0019 Score=49.64 Aligned_cols=23 Identities=30% Similarity=0.567 Sum_probs=19.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCC
Q 030504 15 KLVIVGDGGTGKTTFVKRHLTGEF 38 (176)
Q Consensus 15 ~i~i~G~~~~GKttl~~~~~~~~~ 38 (176)
.++++|++|+|||||++.+ .|-.
T Consensus 371 ~~~ivG~sGsGKSTll~~l-~g~~ 393 (582)
T 3b5x_A 371 TVALVGRSGSGKSTIANLF-TRFY 393 (582)
T ss_pred EEEEECCCCCCHHHHHHHH-hcCC
Confidence 5899999999999999974 4443
|
| >1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A | Back alignment and structure |
|---|
Probab=96.39 E-value=0.0023 Score=46.44 Aligned_cols=21 Identities=29% Similarity=0.257 Sum_probs=18.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHh
Q 030504 14 FKLVIVGDGGTGKTTFVKRHL 34 (176)
Q Consensus 14 ~~i~i~G~~~~GKttl~~~~~ 34 (176)
-.++++|++|+|||||++.+.
T Consensus 170 ~~i~l~G~~GsGKSTl~~~l~ 190 (377)
T 1svm_A 170 RYWLFKGPIDSGKTTLAAALL 190 (377)
T ss_dssp CEEEEECSTTSSHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 478999999999999999855
|
| >2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=96.37 E-value=0.002 Score=42.85 Aligned_cols=23 Identities=26% Similarity=0.498 Sum_probs=19.7
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhc
Q 030504 13 SFKLVIVGDGGTGKTTFVKRHLT 35 (176)
Q Consensus 13 ~~~i~i~G~~~~GKttl~~~~~~ 35 (176)
.+.|+++|.+||||||+.+.+..
T Consensus 3 ~~~i~i~G~~gsGkst~~~~l~~ 25 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKRVAS 25 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 46799999999999999987643
|
| >3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A* | Back alignment and structure |
|---|
Probab=96.37 E-value=0.0023 Score=42.08 Aligned_cols=21 Identities=24% Similarity=0.428 Sum_probs=18.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 030504 15 KLVIVGDGGTGKTTFVKRHLT 35 (176)
Q Consensus 15 ~i~i~G~~~~GKttl~~~~~~ 35 (176)
.|.|.|.+||||||+.+.+..
T Consensus 4 ~i~i~G~~GsGKst~~~~la~ 24 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAA 24 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 699999999999999998643
|
| >1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11 | Back alignment and structure |
|---|
Probab=96.37 E-value=0.002 Score=46.35 Aligned_cols=22 Identities=23% Similarity=0.279 Sum_probs=19.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 030504 15 KLVIVGDGGTGKTTFVKRHLTG 36 (176)
Q Consensus 15 ~i~i~G~~~~GKttl~~~~~~~ 36 (176)
-+.|+|++|+|||||+..+...
T Consensus 133 i~~I~G~~GsGKTTL~~~l~~~ 154 (349)
T 1pzn_A 133 ITEVFGEFGSGKTQLAHTLAVM 154 (349)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999986643
|
| >2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=96.37 E-value=0.0019 Score=46.51 Aligned_cols=23 Identities=43% Similarity=0.499 Sum_probs=19.7
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhc
Q 030504 13 SFKLVIVGDGGTGKTTFVKRHLT 35 (176)
Q Consensus 13 ~~~i~i~G~~~~GKttl~~~~~~ 35 (176)
.-.++|.|++|+|||||++.+..
T Consensus 45 ~~~vli~G~~G~GKTtl~~~l~~ 67 (386)
T 2qby_A 45 PNNIFIYGLTGTGKTAVVKFVLS 67 (386)
T ss_dssp CCCEEEEECTTSSHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHH
Confidence 34799999999999999998654
|
| >4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.37 E-value=0.0025 Score=47.09 Aligned_cols=23 Identities=26% Similarity=0.355 Sum_probs=20.0
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHh
Q 030504 12 PSFKLVIVGDGGTGKTTFVKRHL 34 (176)
Q Consensus 12 ~~~~i~i~G~~~~GKttl~~~~~ 34 (176)
++-.|++.|+||+|||+|++++.
T Consensus 214 ~prGvLLyGPPGTGKTllAkAiA 236 (434)
T 4b4t_M 214 APKGALMYGPPGTGKTLLARACA 236 (434)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHH
T ss_pred CCCeeEEECcCCCCHHHHHHHHH
Confidence 34679999999999999999854
|
| >1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.36 E-value=0.0024 Score=45.32 Aligned_cols=24 Identities=33% Similarity=0.477 Sum_probs=20.5
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHhc
Q 030504 12 PSFKLVIVGDGGTGKTTFVKRHLT 35 (176)
Q Consensus 12 ~~~~i~i~G~~~~GKttl~~~~~~ 35 (176)
+.-.|++.|++|+|||+|++.+..
T Consensus 44 ~~~~iLL~GppGtGKT~la~ala~ 67 (322)
T 1xwi_A 44 PWRGILLFGPPGTGKSYLAKAVAT 67 (322)
T ss_dssp CCSEEEEESSSSSCHHHHHHHHHH
T ss_pred CCceEEEECCCCccHHHHHHHHHH
Confidence 346799999999999999998653
|
| >1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A* | Back alignment and structure |
|---|
Probab=96.34 E-value=0.0023 Score=44.79 Aligned_cols=23 Identities=26% Similarity=0.540 Sum_probs=19.8
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhc
Q 030504 13 SFKLVIVGDGGTGKTTFVKRHLT 35 (176)
Q Consensus 13 ~~~i~i~G~~~~GKttl~~~~~~ 35 (176)
.-.+++.|++|+|||++++.+..
T Consensus 50 ~~~vll~G~~GtGKT~la~~la~ 72 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIARRLAK 72 (310)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999998653
|
| >3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C | Back alignment and structure |
|---|
Probab=96.34 E-value=0.0025 Score=45.15 Aligned_cols=23 Identities=30% Similarity=0.520 Sum_probs=20.2
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHh
Q 030504 12 PSFKLVIVGDGGTGKTTFVKRHL 34 (176)
Q Consensus 12 ~~~~i~i~G~~~~GKttl~~~~~ 34 (176)
+...+++.|++|+|||+|++.+.
T Consensus 50 ~~~~vLl~GppGtGKT~la~aia 72 (322)
T 3eie_A 50 PTSGILLYGPPGTGKSYLAKAVA 72 (322)
T ss_dssp CCCEEEEECSSSSCHHHHHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHH
Confidence 34679999999999999999865
|
| >4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A | Back alignment and structure |
|---|
Probab=96.34 E-value=0.0022 Score=49.26 Aligned_cols=23 Identities=26% Similarity=0.530 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCC
Q 030504 15 KLVIVGDGGTGKTTFVKRHLTGEF 38 (176)
Q Consensus 15 ~i~i~G~~~~GKttl~~~~~~~~~ 38 (176)
.++++|++|+|||||++. +.|-.
T Consensus 369 ~~~ivG~sGsGKSTll~~-l~g~~ 391 (578)
T 4a82_A 369 TVAFVGMSGGGKSTLINL-IPRFY 391 (578)
T ss_dssp EEEEECSTTSSHHHHHTT-TTTSS
T ss_pred EEEEECCCCChHHHHHHH-HhcCC
Confidence 589999999999999996 44444
|
| >1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10 | Back alignment and structure |
|---|
Probab=96.34 E-value=0.0022 Score=45.25 Aligned_cols=92 Identities=15% Similarity=0.066 Sum_probs=50.7
Q ss_pred EEEEEEeCCCcccccc-cc------c-----cccccccEEEEEEeCCChhhhhhHHHHHHHHhhhcCCCCEEEEEeCCCC
Q 030504 62 IRFYCWDTAGQEKFGG-LR------D-----GYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDV 129 (176)
Q Consensus 62 ~~~~~~D~~g~~~~~~-~~------~-----~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl 129 (176)
+.+.++||||...... .. . ..-...+.+++|+|.... ++.......+.+. .+. .-+|.||.|-
T Consensus 187 ~dvvIiDtpg~~~~~~~l~~eL~~l~~~i~~~i~~~p~~vllVlda~t~---~~~l~~a~~~~~~-~~i-~gvVlTk~D~ 261 (306)
T 1vma_A 187 KDVVIIDTAGRLHTKKNLMEELRKVHRVVKKKIPDAPHETLLVIDATTG---QNGLVQAKIFKEA-VNV-TGIILTKLDG 261 (306)
T ss_dssp CSEEEEEECCCCSCHHHHHHHHHHHHHHGGGTCTTCCSEEEEEEEGGGH---HHHHHHHHHHHHH-SCC-CEEEEECGGG
T ss_pred CCEEEEECCCchhhHHHHHHHHHHHHHHHhhccCCCCcEEEEEEECCCC---HHHHHHHHHHHhc-CCC-CEEEEeCCCC
Confidence 4578999999532111 00 0 011247888999998733 2222222333332 132 3456799996
Q ss_pred CccccCHHHHHHHHHcCCeEEEeccCCCCChHH
Q 030504 130 KNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEK 162 (176)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~ 162 (176)
... ...........+.++..++. |+.+++
T Consensus 262 ~~~--gG~~l~~~~~~~~Pi~~i~~--Ge~~~d 290 (306)
T 1vma_A 262 TAK--GGITLAIARELGIPIKFIGV--GEKAED 290 (306)
T ss_dssp CSC--TTHHHHHHHHHCCCEEEEEC--SSSGGG
T ss_pred ccc--hHHHHHHHHHHCCCEEEEeC--CCChhh
Confidence 432 23467778888888877743 444443
|
| >3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=96.34 E-value=0.0027 Score=40.76 Aligned_cols=24 Identities=17% Similarity=0.379 Sum_probs=20.6
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcC
Q 030504 13 SFKLVIVGDGGTGKTTFVKRHLTG 36 (176)
Q Consensus 13 ~~~i~i~G~~~~GKttl~~~~~~~ 36 (176)
..-|++.|++|+||||+...+...
T Consensus 16 G~gvli~G~SGaGKStlal~L~~r 39 (181)
T 3tqf_A 16 KMGVLITGEANIGKSELSLALIDR 39 (181)
T ss_dssp TEEEEEEESSSSSHHHHHHHHHHT
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHc
Confidence 356999999999999999987753
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.33 E-value=0.0021 Score=49.56 Aligned_cols=20 Identities=40% Similarity=0.488 Sum_probs=17.9
Q ss_pred EEEEEcCCCCcHHHHHHHHh
Q 030504 15 KLVIVGDGGTGKTTFVKRHL 34 (176)
Q Consensus 15 ~i~i~G~~~~GKttl~~~~~ 34 (176)
.++++|++|+|||||++.+.
T Consensus 105 i~~LvGpNGaGKSTLLkiL~ 124 (608)
T 3j16_B 105 VLGLVGTNGIGKSTALKILA 124 (608)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHh
Confidence 58999999999999999744
|
| >1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=96.32 E-value=0.0019 Score=46.19 Aligned_cols=20 Identities=40% Similarity=0.536 Sum_probs=18.2
Q ss_pred EEEEcCCCCcHHHHHHHHhc
Q 030504 16 LVIVGDGGTGKTTFVKRHLT 35 (176)
Q Consensus 16 i~i~G~~~~GKttl~~~~~~ 35 (176)
+++.|++|+||||+++.+..
T Consensus 39 ~ll~Gp~G~GKTtl~~~la~ 58 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRCMALLE 58 (354)
T ss_dssp EEEECSTTSSHHHHHHTHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 99999999999999998654
|
| >3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=96.32 E-value=0.0019 Score=49.83 Aligned_cols=23 Identities=43% Similarity=0.661 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCC
Q 030504 15 KLVIVGDGGTGKTTFVKRHLTGEF 38 (176)
Q Consensus 15 ~i~i~G~~~~GKttl~~~~~~~~~ 38 (176)
.++++|++|+|||||++. +.|-.
T Consensus 383 ~~~ivG~sGsGKSTll~~-l~g~~ 405 (598)
T 3qf4_B 383 KVALVGPTGSGKTTIVNL-LMRFY 405 (598)
T ss_dssp EEEEECCTTSSTTHHHHH-HTTSS
T ss_pred EEEEECCCCCcHHHHHHH-HhcCc
Confidence 589999999999999997 44444
|
| >3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A* | Back alignment and structure |
|---|
Probab=96.32 E-value=0.0023 Score=46.29 Aligned_cols=19 Identities=26% Similarity=0.492 Sum_probs=16.8
Q ss_pred EEEEcCCCCcHHHHHHHHh
Q 030504 16 LVIVGDGGTGKTTFVKRHL 34 (176)
Q Consensus 16 i~i~G~~~~GKttl~~~~~ 34 (176)
.+|+|+.|+|||||++.+.
T Consensus 26 ~~i~G~NGaGKTTll~ai~ 44 (365)
T 3qf7_A 26 TVVEGPNGAGKSSLFEAIS 44 (365)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 5689999999999999854
|
| >4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.31 E-value=0.0028 Score=46.74 Aligned_cols=22 Identities=36% Similarity=0.475 Sum_probs=19.4
Q ss_pred eeEEEEEcCCCCcHHHHHHHHh
Q 030504 13 SFKLVIVGDGGTGKTTFVKRHL 34 (176)
Q Consensus 13 ~~~i~i~G~~~~GKttl~~~~~ 34 (176)
+-.|++.|+||+|||+|++++.
T Consensus 206 prGiLL~GPPGtGKT~lakAiA 227 (428)
T 4b4t_K 206 PRGVLLYGPPGTGKTMLVKAVA 227 (428)
T ss_dssp CCEEEEESCTTTTHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHH
Confidence 4569999999999999999855
|
| >1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20 | Back alignment and structure |
|---|
Probab=96.28 E-value=0.0026 Score=46.00 Aligned_cols=21 Identities=29% Similarity=0.548 Sum_probs=18.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 030504 15 KLVIVGDGGTGKTTFVKRHLT 35 (176)
Q Consensus 15 ~i~i~G~~~~GKttl~~~~~~ 35 (176)
.++|.|++|+|||||++.+..
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~ 66 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWE 66 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 699999999999999998653
|
| >3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228} | Back alignment and structure |
|---|
Probab=96.28 E-value=0.0025 Score=45.52 Aligned_cols=22 Identities=36% Similarity=0.511 Sum_probs=19.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 030504 14 FKLVIVGDGGTGKTTFVKRHLT 35 (176)
Q Consensus 14 ~~i~i~G~~~~GKttl~~~~~~ 35 (176)
.-|+|+|++|||||||..++..
T Consensus 8 ~lI~I~GptgSGKTtla~~La~ 29 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAK 29 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEECCCcCcHHHHHHHHHH
Confidence 4699999999999999988653
|
| >4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.27 E-value=0.003 Score=46.70 Aligned_cols=23 Identities=35% Similarity=0.505 Sum_probs=20.1
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHh
Q 030504 12 PSFKLVIVGDGGTGKTTFVKRHL 34 (176)
Q Consensus 12 ~~~~i~i~G~~~~GKttl~~~~~ 34 (176)
++-.|++.|+||+|||+|++++.
T Consensus 214 ~prGvLL~GPPGtGKTllAkAiA 236 (437)
T 4b4t_L 214 PPKGVLLYGPPGTGKTLLAKAVA 236 (437)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHH
Confidence 44689999999999999999855
|
| >3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=96.25 E-value=0.0021 Score=49.42 Aligned_cols=23 Identities=22% Similarity=0.538 Sum_probs=19.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCC
Q 030504 15 KLVIVGDGGTGKTTFVKRHLTGEF 38 (176)
Q Consensus 15 ~i~i~G~~~~GKttl~~~~~~~~~ 38 (176)
.++++|++|+|||||++. +.|-.
T Consensus 371 ~~~ivG~sGsGKSTll~~-l~g~~ 393 (587)
T 3qf4_A 371 LVAVLGETGSGKSTLMNL-IPRLI 393 (587)
T ss_dssp EEEEECSSSSSHHHHHHT-TTTSS
T ss_pred EEEEECCCCCCHHHHHHH-HhCCc
Confidence 589999999999999997 44443
|
| >1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A | Back alignment and structure |
|---|
Probab=96.25 E-value=0.0029 Score=40.96 Aligned_cols=21 Identities=14% Similarity=0.430 Sum_probs=18.8
Q ss_pred EEEEcCCCCcHHHHHHHHhcC
Q 030504 16 LVIVGDGGTGKTTFVKRHLTG 36 (176)
Q Consensus 16 i~i~G~~~~GKttl~~~~~~~ 36 (176)
++|+|.++||||+|..++...
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~ 22 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD 22 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS
T ss_pred EEEECCCCCcHHHHHHHHHhc
Confidence 789999999999999997754
|
| >1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=96.25 E-value=0.0024 Score=45.56 Aligned_cols=20 Identities=35% Similarity=0.471 Sum_probs=18.2
Q ss_pred EEEEcCCCCcHHHHHHHHhc
Q 030504 16 LVIVGDGGTGKTTFVKRHLT 35 (176)
Q Consensus 16 i~i~G~~~~GKttl~~~~~~ 35 (176)
+++.|++|+||||+++.+..
T Consensus 49 ~ll~Gp~G~GKTtla~~la~ 68 (340)
T 1sxj_C 49 LLFYGPPGTGKTSTIVALAR 68 (340)
T ss_dssp EEEECSSSSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 89999999999999998654
|
| >1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A* | Back alignment and structure |
|---|
Probab=96.24 E-value=0.0024 Score=48.43 Aligned_cols=19 Identities=37% Similarity=0.616 Sum_probs=17.6
Q ss_pred EEEEEcCCCCcHHHHHHHH
Q 030504 15 KLVIVGDGGTGKTTFVKRH 33 (176)
Q Consensus 15 ~i~i~G~~~~GKttl~~~~ 33 (176)
-++|+|++|+|||||++.|
T Consensus 41 ~~~l~G~nGsGKSTL~~~~ 59 (525)
T 1tf7_A 41 STLVSGTSGTGKTLFSIQF 59 (525)
T ss_dssp EEEEEESTTSSHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHH
Confidence 4899999999999999986
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* | Back alignment and structure |
|---|
Probab=96.23 E-value=0.0036 Score=48.35 Aligned_cols=23 Identities=57% Similarity=0.742 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCC
Q 030504 15 KLVIVGDGGTGKTTFVKRHLTGEF 38 (176)
Q Consensus 15 ~i~i~G~~~~GKttl~~~~~~~~~ 38 (176)
.++++|++|+|||||++. +.|..
T Consensus 119 ~~~LiG~NGsGKSTLlki-L~Gll 141 (607)
T 3bk7_A 119 VVGIVGPNGTGKTTAVKI-LAGQL 141 (607)
T ss_dssp EEEEECCTTSSHHHHHHH-HTTSS
T ss_pred EEEEECCCCChHHHHHHH-HhCCC
Confidence 589999999999999997 44433
|
| >3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus} | Back alignment and structure |
|---|
Probab=96.21 E-value=0.0029 Score=45.12 Aligned_cols=21 Identities=33% Similarity=0.496 Sum_probs=18.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 030504 15 KLVIVGDGGTGKTTFVKRHLT 35 (176)
Q Consensus 15 ~i~i~G~~~~GKttl~~~~~~ 35 (176)
-|+|+|++|||||+|...+..
T Consensus 42 lIvI~GPTgsGKTtLa~~LA~ 62 (339)
T 3a8t_A 42 LLVLMGATGTGKSRLSIDLAA 62 (339)
T ss_dssp EEEEECSTTSSHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999998653
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=96.21 E-value=0.0027 Score=48.31 Aligned_cols=23 Identities=43% Similarity=0.681 Sum_probs=18.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCC
Q 030504 15 KLVIVGDGGTGKTTFVKRHLTGEF 38 (176)
Q Consensus 15 ~i~i~G~~~~GKttl~~~~~~~~~ 38 (176)
.++|+|++|+|||||++.+ .|-.
T Consensus 296 i~~i~G~nGsGKSTLl~~l-~Gl~ 318 (538)
T 3ozx_A 296 IIGILGPNGIGKTTFARIL-VGEI 318 (538)
T ss_dssp EEEEECCTTSSHHHHHHHH-TTSS
T ss_pred EEEEECCCCCCHHHHHHHH-hCCC
Confidence 3789999999999999974 4443
|
| >2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A* | Back alignment and structure |
|---|
Probab=96.18 E-value=0.0049 Score=46.70 Aligned_cols=24 Identities=29% Similarity=0.307 Sum_probs=20.3
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHh
Q 030504 11 YPSFKLVIVGDGGTGKTTFVKRHL 34 (176)
Q Consensus 11 ~~~~~i~i~G~~~~GKttl~~~~~ 34 (176)
....-|+++|.+|+||||+.+++.
T Consensus 33 ~~~~lIvlvGlpGSGKSTia~~La 56 (520)
T 2axn_A 33 NSPTVIVMVGLPARGKTYISKKLT 56 (520)
T ss_dssp CCCEEEEEECCTTSSHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHH
Confidence 345679999999999999999864
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=96.17 E-value=0.0032 Score=47.92 Aligned_cols=21 Identities=52% Similarity=0.635 Sum_probs=18.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 030504 15 KLVIVGDGGTGKTTFVKRHLT 35 (176)
Q Consensus 15 ~i~i~G~~~~GKttl~~~~~~ 35 (176)
.++|+|+.|+|||||++.+.+
T Consensus 314 ~~~i~G~NGsGKSTLlk~l~G 334 (538)
T 1yqt_A 314 VIGIVGPNGIGKTTFVKMLAG 334 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 478999999999999998543
|
| >3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A | Back alignment and structure |
|---|
Probab=96.17 E-value=0.0041 Score=44.82 Aligned_cols=23 Identities=22% Similarity=0.449 Sum_probs=20.2
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHh
Q 030504 12 PSFKLVIVGDGGTGKTTFVKRHL 34 (176)
Q Consensus 12 ~~~~i~i~G~~~~GKttl~~~~~ 34 (176)
+...+++.|++|+|||++++.+.
T Consensus 50 ~~~~vll~GppGtGKT~la~~ia 72 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLLAETLA 72 (363)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHH
Confidence 45689999999999999999854
|
| >2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=96.15 E-value=0.004 Score=42.15 Aligned_cols=21 Identities=43% Similarity=0.499 Sum_probs=18.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHh
Q 030504 14 FKLVIVGDGGTGKTTFVKRHL 34 (176)
Q Consensus 14 ~~i~i~G~~~~GKttl~~~~~ 34 (176)
..|++.|..||||||+++.+.
T Consensus 3 ~~i~~~G~~g~GKtt~~~~l~ 23 (241)
T 2ocp_A 3 RRLSIEGNIAVGKSTFVKLLT 23 (241)
T ss_dssp EEEEEEECTTSSHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHH
Confidence 569999999999999999865
|
| >3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D* | Back alignment and structure |
|---|
Probab=96.15 E-value=0.0032 Score=45.32 Aligned_cols=22 Identities=32% Similarity=0.428 Sum_probs=19.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 030504 14 FKLVIVGDGGTGKTTFVKRHLT 35 (176)
Q Consensus 14 ~~i~i~G~~~~GKttl~~~~~~ 35 (176)
-.+++.|++|+|||++++.+..
T Consensus 71 ~~vLl~GppGtGKT~la~~la~ 92 (368)
T 3uk6_A 71 RAVLIAGQPGTGKTAIAMGMAQ 92 (368)
T ss_dssp CEEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999998653
|
| >3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=96.15 E-value=0.0029 Score=47.27 Aligned_cols=23 Identities=26% Similarity=0.439 Sum_probs=19.4
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhc
Q 030504 13 SFKLVIVGDGGTGKTTFVKRHLT 35 (176)
Q Consensus 13 ~~~i~i~G~~~~GKttl~~~~~~ 35 (176)
.-+++++|++|+|||++++.+..
T Consensus 201 ~~~~LL~G~pG~GKT~la~~la~ 223 (468)
T 3pxg_A 201 KNNPVLIGEPGVGKTAIAEGLAQ 223 (468)
T ss_dssp SCEEEEESCTTTTTHHHHHHHHH
T ss_pred CCCeEEECCCCCCHHHHHHHHHH
Confidence 34789999999999999998653
|
| >3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A | Back alignment and structure |
|---|
Probab=96.15 E-value=0.0047 Score=43.52 Aligned_cols=22 Identities=18% Similarity=0.300 Sum_probs=19.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 030504 14 FKLVIVGDGGTGKTTFVKRHLT 35 (176)
Q Consensus 14 ~~i~i~G~~~~GKttl~~~~~~ 35 (176)
.-|+|+|++|||||+|...+..
T Consensus 11 ~~i~i~GptgsGKt~la~~La~ 32 (316)
T 3foz_A 11 KAIFLMGPTASGKTALAIELRK 32 (316)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred cEEEEECCCccCHHHHHHHHHH
Confidence 4588999999999999998653
|
| >2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A* | Back alignment and structure |
|---|
Probab=96.14 E-value=0.0035 Score=44.99 Aligned_cols=22 Identities=27% Similarity=0.530 Sum_probs=18.8
Q ss_pred eeEEEEEcCCCCcHHHHHHHHh
Q 030504 13 SFKLVIVGDGGTGKTTFVKRHL 34 (176)
Q Consensus 13 ~~~i~i~G~~~~GKttl~~~~~ 34 (176)
..+|+++|++|+||||+...+.
T Consensus 24 ~~~i~l~G~~G~GKTTl~~~la 45 (359)
T 2ga8_A 24 RVCVILVGSPGSGKSTIAEELC 45 (359)
T ss_dssp CEEEEEECCTTSSHHHHHHHHH
T ss_pred eeEEEEECCCCCcHHHHHHHHH
Confidence 3579999999999999998643
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* | Back alignment and structure |
|---|
Probab=96.14 E-value=0.0031 Score=48.70 Aligned_cols=21 Identities=52% Similarity=0.635 Sum_probs=18.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 030504 15 KLVIVGDGGTGKTTFVKRHLT 35 (176)
Q Consensus 15 ~i~i~G~~~~GKttl~~~~~~ 35 (176)
.++|+|+.|+|||||++.+.+
T Consensus 384 i~~i~G~NGsGKSTLlk~l~G 404 (607)
T 3bk7_A 384 VIGIVGPNGIGKTTFVKMLAG 404 (607)
T ss_dssp EEEEECCTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 478999999999999997543
|
| >4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.12 E-value=0.0034 Score=45.86 Aligned_cols=23 Identities=26% Similarity=0.404 Sum_probs=19.8
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHh
Q 030504 12 PSFKLVIVGDGGTGKTTFVKRHL 34 (176)
Q Consensus 12 ~~~~i~i~G~~~~GKttl~~~~~ 34 (176)
++-.|++.|+||+|||.|+.++.
T Consensus 181 ~prGvLL~GPPGTGKTllAkAiA 203 (405)
T 4b4t_J 181 QPKGVILYGPPGTGKTLLARAVA 203 (405)
T ss_dssp CCCCEEEESCSSSSHHHHHHHHH
T ss_pred CCCceEEeCCCCCCHHHHHHHHH
Confidence 34579999999999999999854
|
| >3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A* | Back alignment and structure |
|---|
Probab=96.12 E-value=0.0031 Score=46.12 Aligned_cols=20 Identities=20% Similarity=0.232 Sum_probs=17.9
Q ss_pred EEEEEcCCCCcHHHHHHHHh
Q 030504 15 KLVIVGDGGTGKTTFVKRHL 34 (176)
Q Consensus 15 ~i~i~G~~~~GKttl~~~~~ 34 (176)
-++|+|++|+|||||+..+.
T Consensus 180 i~~I~G~sGsGKTTLl~~la 199 (400)
T 3lda_A 180 ITELFGEFRTGKSQLCHTLA 199 (400)
T ss_dssp EEEEEESTTSSHHHHHHHHH
T ss_pred EEEEEcCCCCChHHHHHHHH
Confidence 48899999999999999865
|
| >1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=96.12 E-value=0.0038 Score=45.16 Aligned_cols=24 Identities=21% Similarity=0.458 Sum_probs=20.3
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHhc
Q 030504 12 PSFKLVIVGDGGTGKTTFVKRHLT 35 (176)
Q Consensus 12 ~~~~i~i~G~~~~GKttl~~~~~~ 35 (176)
....+++.|++|+|||++++.+..
T Consensus 71 ~~~~ill~Gp~GtGKT~la~~la~ 94 (376)
T 1um8_A 71 SKSNILLIGPTGSGKTLMAQTLAK 94 (376)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHH
T ss_pred CCCCEEEECCCCCCHHHHHHHHHH
Confidence 345799999999999999998653
|
| >1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=96.10 E-value=0.0032 Score=44.91 Aligned_cols=20 Identities=30% Similarity=0.448 Sum_probs=18.1
Q ss_pred EEEEcCCCCcHHHHHHHHhc
Q 030504 16 LVIVGDGGTGKTTFVKRHLT 35 (176)
Q Consensus 16 i~i~G~~~~GKttl~~~~~~ 35 (176)
+++.|++|+|||++++.+..
T Consensus 61 ~ll~G~~G~GKT~la~~la~ 80 (353)
T 1sxj_D 61 MLFYGPPGTGKTSTILALTK 80 (353)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 99999999999999998653
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A | Back alignment and structure |
|---|
Probab=96.10 E-value=0.0036 Score=50.79 Aligned_cols=24 Identities=29% Similarity=0.567 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCC
Q 030504 15 KLVIVGDGGTGKTTFVKRHLTGEF 38 (176)
Q Consensus 15 ~i~i~G~~~~GKttl~~~~~~~~~ 38 (176)
.++|+|++|+|||||++.+.+|..
T Consensus 463 ~v~LiGpNGsGKSTLLk~LagG~i 486 (986)
T 2iw3_A 463 RYGICGPNGCGKSTLMRAIANGQV 486 (986)
T ss_dssp EEEEECSTTSSHHHHHHHHHHTCS
T ss_pred EEEEECCCCCCHHHHHHHHhCCCc
Confidence 489999999999999999876643
|
| >2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3} | Back alignment and structure |
|---|
Probab=96.10 E-value=0.0037 Score=44.11 Aligned_cols=23 Identities=26% Similarity=0.343 Sum_probs=19.8
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhc
Q 030504 13 SFKLVIVGDGGTGKTTFVKRHLT 35 (176)
Q Consensus 13 ~~~i~i~G~~~~GKttl~~~~~~ 35 (176)
.-.+++.|++|+|||+|+..+..
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~ 174 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAH 174 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999988553
|
| >2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A* | Back alignment and structure |
|---|
Probab=96.09 E-value=0.0036 Score=45.09 Aligned_cols=24 Identities=33% Similarity=0.533 Sum_probs=20.2
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHhc
Q 030504 12 PSFKLVIVGDGGTGKTTFVKRHLT 35 (176)
Q Consensus 12 ~~~~i~i~G~~~~GKttl~~~~~~ 35 (176)
+.-.|++.|++|+|||+|++.+..
T Consensus 83 ~~~~iLL~GppGtGKT~la~ala~ 106 (355)
T 2qp9_X 83 PTSGILLYGPPGTGKSYLAKAVAT 106 (355)
T ss_dssp CCCCEEEECSTTSCHHHHHHHHHH
T ss_pred CCceEEEECCCCCcHHHHHHHHHH
Confidence 345699999999999999998653
|
| >2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi} | Back alignment and structure |
|---|
Probab=96.09 E-value=0.0034 Score=44.62 Aligned_cols=21 Identities=19% Similarity=0.428 Sum_probs=18.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 030504 15 KLVIVGDGGTGKTTFVKRHLT 35 (176)
Q Consensus 15 ~i~i~G~~~~GKttl~~~~~~ 35 (176)
-++|.|+.|+|||||++.+..
T Consensus 33 ~v~i~G~~G~GKT~Ll~~~~~ 53 (350)
T 2qen_A 33 LTLLLGIRRVGKSSLLRAFLN 53 (350)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEECCCcCCHHHHHHHHHH
Confidence 589999999999999999764
|
| >2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=96.06 E-value=0.0028 Score=45.71 Aligned_cols=23 Identities=30% Similarity=0.388 Sum_probs=19.8
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhc
Q 030504 13 SFKLVIVGDGGTGKTTFVKRHLT 35 (176)
Q Consensus 13 ~~~i~i~G~~~~GKttl~~~~~~ 35 (176)
.-.++|.|++|+|||++++.+..
T Consensus 44 ~~~vll~G~~G~GKT~l~~~~~~ 66 (387)
T 2v1u_A 44 PSNALLYGLTGTGKTAVARLVLR 66 (387)
T ss_dssp CCCEEECBCTTSSHHHHHHHHHH
T ss_pred CCcEEEECCCCCCHHHHHHHHHH
Confidence 44799999999999999998653
|
| >2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A* | Back alignment and structure |
|---|
Probab=96.05 E-value=0.0013 Score=45.16 Aligned_cols=21 Identities=38% Similarity=0.532 Sum_probs=18.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 030504 15 KLVIVGDGGTGKTTFVKRHLT 35 (176)
Q Consensus 15 ~i~i~G~~~~GKttl~~~~~~ 35 (176)
.+++.|++|+|||+|++.+..
T Consensus 46 ~vll~G~~GtGKT~la~~la~ 66 (268)
T 2r62_A 46 GVLLVGPPGTGKTLLAKAVAG 66 (268)
T ss_dssp CCCCBCSSCSSHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHH
Confidence 489999999999999998654
|
| >2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20 | Back alignment and structure |
|---|
Probab=96.05 E-value=0.0034 Score=44.66 Aligned_cols=21 Identities=24% Similarity=0.414 Sum_probs=18.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 030504 15 KLVIVGDGGTGKTTFVKRHLT 35 (176)
Q Consensus 15 ~i~i~G~~~~GKttl~~~~~~ 35 (176)
-++|.|++|+|||+|++.+..
T Consensus 32 ~v~i~G~~G~GKT~L~~~~~~ 52 (357)
T 2fna_A 32 ITLVLGLRRTGKSSIIKIGIN 52 (357)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999998764
|
| >3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.05 E-value=0.0043 Score=44.69 Aligned_cols=23 Identities=35% Similarity=0.447 Sum_probs=20.1
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHh
Q 030504 12 PSFKLVIVGDGGTGKTTFVKRHL 34 (176)
Q Consensus 12 ~~~~i~i~G~~~~GKttl~~~~~ 34 (176)
+...+++.|++|+|||+|++.+.
T Consensus 116 ~~~~vLl~GppGtGKT~la~aia 138 (357)
T 3d8b_A 116 PPKGILLFGPPGTGKTLIGKCIA 138 (357)
T ss_dssp CCSEEEEESSTTSSHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHH
Confidence 34579999999999999999865
|
| >3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A | Back alignment and structure |
|---|
Probab=96.04 E-value=0.0051 Score=43.44 Aligned_cols=22 Identities=27% Similarity=0.184 Sum_probs=18.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 030504 14 FKLVIVGDGGTGKTTFVKRHLT 35 (176)
Q Consensus 14 ~~i~i~G~~~~GKttl~~~~~~ 35 (176)
.-|+|+|++|||||+|...+..
T Consensus 4 ~~i~i~GptgsGKt~la~~La~ 25 (322)
T 3exa_A 4 KLVAIVGPTAVGKTKTSVMLAK 25 (322)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred cEEEEECCCcCCHHHHHHHHHH
Confidence 3588999999999999998654
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 176 | ||||
| d1g16a_ | 166 | c.37.1.8 (A:) Rab-related protein Sec4 {Baker's ye | 4e-38 | |
| d1x3sa1 | 177 | c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [Ta | 9e-37 | |
| d2bcgy1 | 194 | c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Sac | 2e-36 | |
| d2ew1a1 | 171 | c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [Ta | 7e-36 | |
| d2fu5c1 | 173 | c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [Ta | 8e-36 | |
| d1yzqa1 | 164 | c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [Ta | 4e-35 | |
| d2f9la1 | 175 | c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [T | 3e-34 | |
| d2bmea1 | 174 | c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [Ta | 8e-34 | |
| d2a5ja1 | 173 | c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [Ta | 7e-33 | |
| d3raba_ | 169 | c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxI | 7e-33 | |
| d1kaoa_ | 167 | c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: | 1e-32 | |
| d1z0fa1 | 166 | c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [Ta | 2e-32 | |
| d2g6ba1 | 170 | c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [T | 4e-32 | |
| d1i2ma_ | 170 | c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 96 | 5e-32 | |
| d1ek0a_ | 170 | c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces | 2e-31 | |
| d2f7sa1 | 186 | c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [T | 2e-31 | |
| d1r2qa_ | 170 | c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: | 4e-31 | |
| d1wmsa_ | 174 | c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: | 3e-30 | |
| d1u8za_ | 168 | c.37.1.8 (A:) Ras-related protein RalA {Cotton-top | 3e-30 | |
| d1ctqa_ | 166 | c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapi | 6e-30 | |
| d1z0ja1 | 167 | c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [ | 9e-29 | |
| d1z08a1 | 167 | c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [T | 2e-28 | |
| d1c1ya_ | 167 | c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: | 6e-28 | |
| d1z2aa1 | 164 | c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [Ta | 8e-27 | |
| d1vg8a_ | 184 | c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId | 2e-26 | |
| d2ngra_ | 191 | c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: | 3e-26 | |
| d1mh1a_ | 183 | c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 96 | 3e-26 | |
| d1x1ra1 | 169 | c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRa | 4e-26 | |
| d1ky3a_ | 175 | c.37.1.8 (A:) Rab-related protein ypt7p {Baker's y | 1e-25 | |
| d1z06a1 | 165 | c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) | 1e-25 | |
| d2erya1 | 171 | c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [ | 2e-25 | |
| d2erxa1 | 171 | c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [ | 3e-25 | |
| d2fn4a1 | 173 | c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [T | 5e-25 | |
| d1kmqa_ | 177 | c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9 | 2e-23 | |
| d1r8sa_ | 160 | c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo | 2e-23 | |
| d2atxa1 | 185 | c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [Tax | 2e-23 | |
| d1m7ba_ | 179 | c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [T | 4e-22 | |
| d1e0sa_ | 173 | c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo | 6e-21 | |
| d1zd9a1 | 164 | c.37.1.8 (A:18-181) ADP-ribosylation factor {Human | 2e-20 | |
| d1fzqa_ | 176 | c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus | 9e-20 | |
| d2bmja1 | 175 | c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {H | 2e-19 | |
| d2atva1 | 168 | c.37.1.8 (A:5-172) Ras-like estrogen-regulated gro | 2e-19 | |
| d1moza_ | 182 | c.37.1.8 (A:) ADP-ribosylation factor {Baker's yea | 4e-19 | |
| d1xtqa1 | 167 | c.37.1.8 (A:3-169) GTP-binding protein RheB {Human | 4e-19 | |
| d1ksha_ | 165 | c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus | 1e-18 | |
| d2g3ya1 | 172 | c.37.1.8 (A:73-244) GTP-binding protein GEM {Human | 5e-18 | |
| d2gjsa1 | 168 | c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [Tax | 1e-17 | |
| d1zj6a1 | 177 | c.37.1.8 (A:2-178) ADP-ribosylation factor {Human | 3e-17 | |
| d1upta_ | 169 | c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo | 1e-16 | |
| d2qtvb1 | 166 | c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharom | 2e-16 | |
| d1f6ba_ | 186 | c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus gr | 4e-15 | |
| d1zcba2 | 200 | c.37.1.8 (A:47-75,A:202-372) Transducin (alpha sub | 9e-14 | |
| d1azta2 | 221 | c.37.1.8 (A:35-65,A:202-391) Transducin (alpha sub | 1e-13 | |
| d2bcjq2 | 200 | c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha sub | 4e-13 | |
| d2fh5b1 | 207 | c.37.1.8 (B:63-269) Signal recognition particle re | 1e-12 | |
| d2gj8a1 | 161 | c.37.1.8 (A:216-376) Probable tRNA modification GT | 3e-11 | |
| d1svsa1 | 195 | c.37.1.8 (A:32-60,A:182-347) Transducin (alpha sub | 8e-11 | |
| d1udxa2 | 180 | c.37.1.8 (A:157-336) Obg GTP-binding protein middl | 2e-07 | |
| d1mkya2 | 186 | c.37.1.8 (A:173-358) Probable GTPase Der, N-termin | 2e-07 | |
| d1nrjb_ | 209 | c.37.1.8 (B:) Signal recognition particle receptor | 4e-07 | |
| d1mkya1 | 171 | c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal | 4e-07 | |
| d1tq4a_ | 400 | c.37.1.8 (A:) Interferon-inducible GTPase {Mouse ( | 1e-06 | |
| d1wf3a1 | 178 | c.37.1.8 (A:3-180) GTPase Era, N-terminal domain { | 2e-06 | |
| d1lnza2 | 185 | c.37.1.8 (A:158-342) Obg GTP-binding protein middl | 1e-05 | |
| d1xzpa2 | 160 | c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotog | 2e-05 | |
| d1egaa1 | 179 | c.37.1.8 (A:4-182) GTPase Era, N-terminal domain { | 4e-05 | |
| d1svia_ | 195 | c.37.1.8 (A:) Probable GTPase EngB {Bacillus subti | 2e-04 | |
| d1np6a_ | 170 | c.37.1.10 (A:) Molybdopterin-guanine dinucleotide | 0.001 | |
| d1puia_ | 188 | c.37.1.8 (A:) Probable GTPase EngB {Escherichia co | 0.004 |
| >d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 166 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein Sec4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 126 bits (317), Expect = 4e-38
Identities = 46/160 (28%), Positives = 81/160 (50%), Gaps = 2/160 (1%)
Query: 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
K++++GD G GK+ + R + +F + TIG++ N K++ WDTAGQE
Sbjct: 3 MKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQE 62
Query: 74 KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPT-WHRDLCRVCENIPIVLCGNKVDVKNR 132
+F + YY I+++D+T T+ N+ + + ++L GNK D++ R
Sbjct: 63 RFRTITTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDMETR 122
Query: 133 QVKAKQVTFHRKK-NLQYYEISAKSNYNFEKPFLYLARKL 171
V A Q K+ + + E SAK++ N + F LA+ +
Sbjct: 123 VVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLI 162
|
| >d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} Length = 177 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab18 species: Human (Homo sapiens) [TaxId: 9606]
Score = 123 bits (309), Expect = 9e-37
Identities = 53/163 (32%), Positives = 87/163 (53%), Gaps = 3/163 (1%)
Query: 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAG 71
+ K++I+G+ G GK++ + R F+ + TIGV+ + K + WDTAG
Sbjct: 6 TTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAG 65
Query: 72 QEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCE--NIPIVLCGNKVDV 129
QE+F L YY Q I+++DVT R T+ + W +L C +I +L GNK+D
Sbjct: 66 QERFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDK 125
Query: 130 KNRQV-KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
+NR+V + + + F RK ++ + E SAK+ + F L K+
Sbjct: 126 ENREVDRNEGLKFARKHSMLFIEASAKTCDGVQCAFEELVEKI 168
|
| >d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 194 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Ytp1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 123 bits (308), Expect = 2e-36
Identities = 50/165 (30%), Positives = 83/165 (50%), Gaps = 4/165 (2%)
Query: 10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDT 69
DY FKL+++G+ G GK+ + R + Y TIGV+ + ++ WDT
Sbjct: 4 DY-LFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDT 62
Query: 70 AGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVD 128
AGQE+F + YY II++DVT + ++ V W +++ R + +L GNK D
Sbjct: 63 AGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCD 122
Query: 129 VKNRQVKAKQVTFHRKK--NLQYYEISAKSNYNFEKPFLYLARKL 171
+K+++V V + + E SA + N E FL +AR++
Sbjct: 123 LKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMARQI 167
|
| >d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} Length = 171 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab30 species: Human (Homo sapiens) [TaxId: 9606]
Score = 121 bits (303), Expect = 7e-36
Identities = 55/165 (33%), Positives = 84/165 (50%), Gaps = 4/165 (2%)
Query: 10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDT 69
D+ FK+V++G+ G GKT V+R G F TIGV+ N K++ WDT
Sbjct: 3 DF-LFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDT 61
Query: 70 AGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPT-WHRDLCRVCENIPIVLCGNKVD 128
AGQE+F + YY I+ +D+T +++ +P + VL GNK+D
Sbjct: 62 AGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKID 121
Query: 129 VKNRQVKAKQ--VTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
+ R+ ++Q F +++ Y E SAK + N EK FL LA +L
Sbjct: 122 LAERREVSQQRAEEFSEAQDMYYLETSAKESDNVEKLFLDLACRL 166
|
| >d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} Length = 173 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab8a species: Mouse (Mus musculus) [TaxId: 10090]
Score = 120 bits (302), Expect = 8e-36
Identities = 50/168 (29%), Positives = 87/168 (51%), Gaps = 4/168 (2%)
Query: 7 QTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYC 66
+T DY FKL+++GD G GKT + R F + TIG++ + +I+
Sbjct: 1 KTYDY-LFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQI 59
Query: 67 WDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDL-CRVCENIPIVLCGN 125
WDTAGQE+F + YY ++++D+T ++ N+ W R++ ++ ++ GN
Sbjct: 60 WDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGN 119
Query: 126 KVDVKNRQVKAKQ--VTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
K DV +++ +K+ +++ E SAK+N N E F LAR +
Sbjct: 120 KCDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARDI 167
|
| >d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]} Length = 164 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab6 species: Human (Homo sapiens) [TaxId: 9606]
Score = 118 bits (297), Expect = 4e-35
Identities = 48/163 (29%), Positives = 85/163 (52%), Gaps = 3/163 (1%)
Query: 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
FKLV +G+ GKT+ + R + F+ Y+ TIG++ + IR WDTAGQE
Sbjct: 1 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGQE 60
Query: 74 KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV-CENIPIVLCGNKVDVKNR 132
+F L Y A++++D+T +++ W D+ ++ I+L GNK D+ ++
Sbjct: 61 RFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADK 120
Query: 133 QVKAKQ--VTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAG 173
+ + + ++ N+ + E SAK+ YN ++ F +A L G
Sbjct: 121 RQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPG 163
|
| >d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} Length = 175 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab11b species: Human (Homo sapiens) [TaxId: 9606]
Score = 116 bits (292), Expect = 3e-34
Identities = 55/165 (33%), Positives = 86/165 (52%), Gaps = 4/165 (2%)
Query: 10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDT 69
DY FK+V++GD G GK+ + R EF + + TIGVE + I+ WDT
Sbjct: 2 DY-LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDT 60
Query: 70 AGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVD 128
AGQE++ + YY A++++D+ LTY+NV W ++L NI I+L GNK D
Sbjct: 61 AGQERYRRITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSD 120
Query: 129 VKNRQVKAKQ--VTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
+++ + F K NL + E SA + N E+ F + ++
Sbjct: 121 LRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEI 165
|
| >d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} Length = 174 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab4a species: Human (Homo sapiens) [TaxId: 9606]
Score = 115 bits (289), Expect = 8e-34
Identities = 52/167 (31%), Positives = 85/167 (50%), Gaps = 4/167 (2%)
Query: 8 TVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCW 67
T D+ FK +++G+ GTGK+ + + + +F+ TIGVE ++ W
Sbjct: 1 TYDF-LFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIW 59
Query: 68 DTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCR-VCENIPIVLCGN- 125
DTAGQE+F + YY A++++D+T+R TY + W D +NI I+LCGN
Sbjct: 60 DTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNK 119
Query: 126 -KVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
+D + F ++ L + E SA + N E+ F+ ARK+
Sbjct: 120 KDLDADREVTFLEASRFAQENELMFLETSALTGENVEEAFVQCARKI 166
|
| >d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} Length = 173 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab2b species: Human (Homo sapiens) [TaxId: 9606]
Score = 113 bits (283), Expect = 7e-33
Identities = 51/161 (31%), Positives = 89/161 (55%), Gaps = 3/161 (1%)
Query: 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
FK +I+GD G GK+ + + F+ ++ TIGVE + +I+ WDTAGQE
Sbjct: 4 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQE 63
Query: 74 KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCR-VCENIPIVLCGNKVDVKNR 132
F + YY A++++D+T R T+ ++ +W D + N+ I+L GNK D+++R
Sbjct: 64 SFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLESR 123
Query: 133 QVKAKQV--TFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
+ ++ F R+ L + E SAK+ N E+ F+ A+++
Sbjct: 124 RDVKREEGEAFAREHGLIFMETSAKTACNVEEAFINTAKEI 164
|
| >d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 169 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab3a species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 113 bits (282), Expect = 7e-33
Identities = 40/165 (24%), Positives = 76/165 (46%), Gaps = 4/165 (2%)
Query: 10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDT 69
DY FK++I+G+ GKT+F+ R+ F + T+G++ + N +I+ WDT
Sbjct: 3 DY-MFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDT 61
Query: 70 AGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCEN---IPIVLCGNK 126
AGQE++ + YY I+M+D+T ++ V W + + + +V
Sbjct: 62 AGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCD 121
Query: 127 VDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
++ + + +++E SAK N N ++ F L +
Sbjct: 122 MEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLVDVI 166
|
| >d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} Length = 167 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap2a species: Human (Homo sapiens) [TaxId: 9606]
Score = 112 bits (281), Expect = 1e-32
Identities = 42/162 (25%), Positives = 85/162 (52%), Gaps = 5/162 (3%)
Query: 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
+K+V++G GG GK+ + +TG F +KY+PTI + + + + DTAG E
Sbjct: 4 YKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIE-DFYRKEIEVDSSPSVLEILDTAGTE 62
Query: 74 KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDL--CRVCENIPIVLCGNKVDVKN 131
+F +RD Y +GQ I+++ + + +++++ + + E +P++L GNKVD+++
Sbjct: 63 QFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLES 122
Query: 132 RQVKAKQV--TFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
+ + + + E SAKS ++ F + R++
Sbjct: 123 EREVSSSEGRALAEEWGCPFMETSAKSKTMVDELFAEIVRQM 164
|
| >d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} Length = 166 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab14 species: Human (Homo sapiens) [TaxId: 9606]
Score = 112 bits (280), Expect = 2e-32
Identities = 54/165 (32%), Positives = 84/165 (50%), Gaps = 4/165 (2%)
Query: 10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDT 69
Y FK +I+GD G GK+ + + +F TIGVE + KI+ WDT
Sbjct: 2 SY-IFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDT 60
Query: 70 AGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVD 128
AGQE+F + YY A++++D+T R TY ++ +W D + N I+L GNK D
Sbjct: 61 AGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKAD 120
Query: 129 VKNRQVKAKQV--TFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
++ ++ + F + L + E SAK+ N E FL A+K+
Sbjct: 121 LEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAAKKI 165
|
| >d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]} Length = 170 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab26 species: Human (Homo sapiens) [TaxId: 9606]
Score = 111 bits (278), Expect = 4e-32
Identities = 46/166 (27%), Positives = 83/166 (50%), Gaps = 5/166 (3%)
Query: 10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEF-EKKYEPTIGVEVHPLDFFTNCGKIRFYCWD 68
D +FK+++VGD G GKT + R G F + T+G++ + K++ WD
Sbjct: 4 DV-AFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWD 62
Query: 69 TAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGN-K 126
TAGQE+F + YY ++++DVT + ++ N+ W ++ ++ ++L GN
Sbjct: 63 TAGQERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKV 122
Query: 127 VDVKNRQVKAKQV-TFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
R VK + ++ L + E SAK+ N + F +A++L
Sbjct: 123 DSAHERVVKREDGEKLAKEYGLPFMETSAKTGLNVDLAFTAIAKEL 168
|
| >d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]} Length = 170 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ran species: Human (Homo sapiens) [TaxId: 9606]
Score = 110 bits (276), Expect = 5e-32
Identities = 134/160 (83%), Positives = 145/160 (90%)
Query: 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
FKLV+VGDGGTGKTTFVKRHLTGEFEKKY T+GVEVHPL F TN G I+F WDTAGQE
Sbjct: 4 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 63
Query: 74 KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQ 133
KFGGLRDGYYI QCAIIMFDVT+R+TYKNVP WHRDL RVCENIPIVLCGNKVD+K+R+
Sbjct: 64 KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRK 123
Query: 134 VKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAG 173
VKAK + FHRKKNLQYY+ISAKSNYNFEKPFL+LARKL G
Sbjct: 124 VKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIG 163
|
| >d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 170 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ypt51 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 109 bits (273), Expect = 2e-31
Identities = 50/166 (30%), Positives = 84/166 (50%), Gaps = 6/166 (3%)
Query: 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAG 71
S KLV++G+ GK++ V R ++ +F + EPTIG N ++F WDTAG
Sbjct: 2 TSIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAG 61
Query: 72 QEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGNKVDV- 129
QE+F L YY + Q A++++DVT ++ + ++I I L GNK+D+
Sbjct: 62 QERFASLAPMYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDML 121
Query: 130 ----KNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
+ + + + +K L ++E SAK+ N FL + K+
Sbjct: 122 QEGGERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVFLGIGEKI 167
|
| >d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} Length = 186 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab27b species: Human (Homo sapiens) [TaxId: 9606]
Score = 109 bits (274), Expect = 2e-31
Identities = 55/176 (31%), Positives = 85/176 (48%), Gaps = 15/176 (8%)
Query: 10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEV----------HPLDFFTNC 59
DY KL+ +GD G GKTTF+ R+ +F K+ T+G++ P
Sbjct: 3 DY-LIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKA 61
Query: 60 GKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CEN 117
K+ WDTAGQE+F L ++ ++MFD+T++ ++ NV W L CEN
Sbjct: 62 FKVHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCEN 121
Query: 118 IPIVLCGNKVDVKNRQVKAKQV--TFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
IVL GNK D+ +++ ++ K + Y+E SA + N EK L +
Sbjct: 122 PDIVLIGNKADLPDQREVNERQARELADKYGIPYFETSAATGQNVEKAVETLLDLI 177
|
| >d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]} Length = 170 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab5a species: Human (Homo sapiens) [TaxId: 9606]
Score = 108 bits (271), Expect = 4e-31
Identities = 51/163 (31%), Positives = 82/163 (50%), Gaps = 3/163 (1%)
Query: 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAG 71
FKLV++G+ GK++ V R + G+F + E TIG + ++F WDTAG
Sbjct: 5 CQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAG 64
Query: 72 QEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGNKVDVK 130
QE++ L YY Q AI+++D+T ++ + NI I L GNK D+
Sbjct: 65 QERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLA 124
Query: 131 NRQVKAKQVTFH--RKKNLQYYEISAKSNYNFEKPFLYLARKL 171
N++ Q +L + E SAK++ N + F+ +A+KL
Sbjct: 125 NKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKL 167
|
| >d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]} Length = 174 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab9a species: Human (Homo sapiens) [TaxId: 9606]
Score = 106 bits (265), Expect = 3e-30
Identities = 50/165 (30%), Positives = 85/165 (51%), Gaps = 7/165 (4%)
Query: 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
FK++++GDGG GK++ + R++T +F+ + TIGVE D + + WDTAGQE
Sbjct: 7 FKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQE 66
Query: 74 KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCE-----NIPIVLCGNKVD 128
+F LR +Y C ++ F V +++N+ W ++ + + P V+ GNK+D
Sbjct: 67 RFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKID 126
Query: 129 VKNRQVKAKQVT--FHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
+ RQV ++ + Y+E SAK N F R++
Sbjct: 127 ISERQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVRRV 171
|
| >d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]} Length = 168 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein RalA species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]
Score = 106 bits (264), Expect = 3e-30
Identities = 46/164 (28%), Positives = 82/164 (50%), Gaps = 5/164 (3%)
Query: 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAG 71
K+++VG GG GK+ + + EF + YEPT + +++ DTAG
Sbjct: 3 ALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRK-KVVLDGEEVQIDILDTAG 61
Query: 72 QEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDV 129
QE + +RD Y+ G+ + +F +T ++ + + RV EN+P +L GNK D+
Sbjct: 62 QEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDL 121
Query: 130 KNRQVKAK--QVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
++++ + + N+ Y E SAK+ N +K F L R++
Sbjct: 122 EDKRQVSVEEAKNRADQWNVNYVETSAKTRANVDKVFFDLMREI 165
|
| >d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} Length = 166 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: cH-p21 Ras protein species: Human (Homo sapiens) [TaxId: 9606]
Score = 105 bits (262), Expect = 6e-30
Identities = 46/163 (28%), Positives = 78/163 (47%), Gaps = 4/163 (2%)
Query: 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAG 71
+KLV+VG GG GK+ + + F +Y+PTI + DTAG
Sbjct: 2 TEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRK-QVVIDGETCLLDILDTAG 60
Query: 72 QEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDV 129
QE++ +RD Y G+ + +F + +++++ + + RV +++P+VL GNK D+
Sbjct: 61 QEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL 120
Query: 130 KNRQV-KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
R V + R + Y E SAK+ E F L R++
Sbjct: 121 AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
|
| >d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} Length = 167 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-22a species: Mouse (Mus musculus) [TaxId: 10090]
Score = 102 bits (255), Expect = 9e-29
Identities = 39/161 (24%), Positives = 70/161 (43%), Gaps = 3/161 (1%)
Query: 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
K+ ++GD G GK++ + R + F+ PTIG +F WDTAG E
Sbjct: 5 LKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLE 64
Query: 74 KFGGLRDGYYIHGQCAIIMFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGN--KVDVK 130
+F L YY AII++D+T T+ + +I + + GN +
Sbjct: 65 RFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTDV 124
Query: 131 NRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
++ + + + E SAK+ N + F+ ++R++
Sbjct: 125 REVMERDAKDYADSIHAIFVETSAKNAININELFIEISRRI 165
|
| >d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]} Length = 167 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab21 species: Human (Homo sapiens) [TaxId: 9606]
Score = 101 bits (252), Expect = 2e-28
Identities = 45/162 (27%), Positives = 80/162 (49%), Gaps = 3/162 (1%)
Query: 13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQ 72
SFK+V++G+G GKT+ V R+ +F K+ T+G ++ WDTAGQ
Sbjct: 3 SFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQ 62
Query: 73 EKFGGLRDGYYIHGQCAIIMFDVTARLTYKN-VPTWHRDLCRVCENIPIVLCGNKVDVKN 131
E+F L YY AI+++D+T +++ + I + + GNK+D++
Sbjct: 63 ERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLEK 122
Query: 132 RQVKAKQV--TFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
+ + Q ++ ++Y SAK N E+ FL L +++
Sbjct: 123 ERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDLCKRM 164
|
| >d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]} Length = 167 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap1A species: Human (Homo sapiens) [TaxId: 9606]
Score = 100 bits (249), Expect = 6e-28
Identities = 51/163 (31%), Positives = 88/163 (53%), Gaps = 6/163 (3%)
Query: 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
+KLV++G GG GK+ + + G F +KY+PTI +C + DTAG E
Sbjct: 4 YKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRK-QVEVDCQQCMLEILDTAGTE 62
Query: 74 KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKN 131
+F +RD Y +GQ +++ +TA+ T+ ++ + RV E++P++L GNK D+++
Sbjct: 63 QFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLED 122
Query: 132 RQVKAKQVTFH---RKKNLQYYEISAKSNYNFEKPFLYLARKL 171
+V K+ + + N + E SAKS N + F L R++
Sbjct: 123 ERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDLVRQI 165
|
| >d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} Length = 164 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab23 species: Mouse (Mus musculus) [TaxId: 10090]
Score = 97.5 bits (241), Expect = 8e-27
Identities = 49/161 (30%), Positives = 83/161 (51%), Gaps = 2/161 (1%)
Query: 13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQ 72
+ K+V+VG+G GK++ ++R+ G F K Y+ TIGV+ N +R WDTAGQ
Sbjct: 2 AIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQ 61
Query: 73 EKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNR 132
E+F + YY Q +++F T R +++ + +W + +IP L NK+D+ +
Sbjct: 62 EEFDAITKAYYRGAQACVLVFSTTDRESFEAISSWREKVVAEVGDIPTALVQNKIDLLDD 121
Query: 133 QV--KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
+ ++ L++Y S K + N + F YLA K
Sbjct: 122 SCIKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVFKYLAEKH 162
|
| >d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 184 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab7 species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 97.1 bits (240), Expect = 2e-26
Identities = 57/165 (34%), Positives = 91/165 (55%), Gaps = 7/165 (4%)
Query: 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
K++I+GD G GKT+ + +++ +F +Y+ TIG + + + + WDTAGQE
Sbjct: 3 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQE 62
Query: 74 KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV-----CENIPIVLCGNKVD 128
+F L +Y C +++FDVTA T+K + +W + EN P V+ GNK+D
Sbjct: 63 RFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKID 122
Query: 129 VKNRQVKAKQV--TFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
++NRQV K+ + K N+ Y+E SAK N E+ F +AR
Sbjct: 123 LENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNA 167
|
| >d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]} Length = 191 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: CDC42 species: Human (Homo sapiens) [TaxId: 9606]
Score = 96.6 bits (239), Expect = 3e-26
Identities = 38/175 (21%), Positives = 69/175 (39%), Gaps = 17/175 (9%)
Query: 13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQ 72
+ K V+VGDG GKT + + T +F +Y PT+ +DTAGQ
Sbjct: 3 TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGG-EPYTLGLFDTAGQ 61
Query: 73 EKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDL-CRVCENIPIVLCGNKVDVKN 131
E + LR Y ++ F V + +++NV C P +L G ++D+++
Sbjct: 62 EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRD 121
Query: 132 RQVKAKQVTFHRK---------------KNLQYYEISAKSNYNFEKPFLYLARKL 171
+++ +++ K ++Y E SA + + F
Sbjct: 122 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAA 176
|
| >d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]} Length = 183 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rac species: Human (Homo sapiens) [TaxId: 9606]
Score = 96.2 bits (238), Expect = 3e-26
Identities = 42/175 (24%), Positives = 73/175 (41%), Gaps = 17/175 (9%)
Query: 13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQ 72
+ K V+VGDG GKT + + T F +Y PT+ + WDTAGQ
Sbjct: 5 AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGK-PVNLGLWDTAGQ 63
Query: 73 EKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRD-LCRVCENIPIVLCGNKVDVKN 131
E + LR Y ++I F + + +++NV + C N PI+L G K+D+++
Sbjct: 64 EDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRD 123
Query: 132 RQVKAKQVTFHR---------------KKNLQYYEISAKSNYNFEKPFLYLARKL 171
+ +++ + ++Y E SA + + F R +
Sbjct: 124 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAV 178
|
| >d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]} Length = 169 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein M-Ras (XRas) species: Mouse (Mus musculus) [TaxId: 10090]
Score = 95.9 bits (237), Expect = 4e-26
Identities = 51/167 (30%), Positives = 85/167 (50%), Gaps = 6/167 (3%)
Query: 10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDT 69
+ P++KLV+VGDGG GK+ + F Y+PTI + DT
Sbjct: 1 NLPTYKLVVVGDGGVGKSALTIQFFQKIFVPDYDPTIEDSYLK-HTEIDNQWAILDVLDT 59
Query: 70 AGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCE--NIPIVLCGNKV 127
AGQE+F +R+ Y G +I++ VT + ++++V +H+ + RV + + P++L NKV
Sbjct: 60 AGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKV 119
Query: 128 DVKNRQ--VKAKQVTFHRKKNLQYYEISAKS-NYNFEKPFLYLARKL 171
D+ + + + + K N+ Y E SAK N +K F L R +
Sbjct: 120 DLMHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHDLVRVI 166
|
| >d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 175 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein ypt7p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 94.8 bits (234), Expect = 1e-25
Identities = 44/168 (26%), Positives = 80/168 (47%), Gaps = 10/168 (5%)
Query: 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDF-FTNCGKIRFYCWDTAGQ 72
K++I+GD G GKT+ + R++ ++ ++Y+ TIG + + WDTAGQ
Sbjct: 3 LKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQ 62
Query: 73 EKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-----ENIPIVLCGNKV 127
E+F L +Y C ++++DVT +++N+ +W + E P V+ GNK+
Sbjct: 63 ERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKI 122
Query: 128 DVKNRQVKAK----QVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
D + + Q ++ + SAK+ N + F +AR
Sbjct: 123 DAEESKKIVSEKSAQELAKSLGDIPLFLTSAKNAINVDTAFEEIARSA 170
|
| >d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} Length = 165 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-33b species: Mouse (Mus musculus) [TaxId: 10090]
Score = 94.3 bits (233), Expect = 1e-25
Identities = 47/163 (28%), Positives = 80/163 (49%), Gaps = 8/163 (4%)
Query: 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
FK++++GD GKT R G F + E TIGV+ + +I+ WDTAGQE
Sbjct: 3 FKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQE 62
Query: 74 KFGGL-RDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVK 130
+F YY + + ++D+T ++ ++P W + + +IP +L GNK D++
Sbjct: 63 RFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLR 122
Query: 131 NRQVKAKQV--TFHRKKNLQYYEISAKS---NYNFEKPFLYLA 168
+ + F ++ +E SAK+ N + E F+ LA
Sbjct: 123 SAIQVPTDLAQKFADTHSMPLFETSAKNPNDNDHVEAIFMTLA 165
|
| >d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} Length = 171 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 93.9 bits (232), Expect = 2e-25
Identities = 47/162 (29%), Positives = 83/162 (51%), Gaps = 5/162 (3%)
Query: 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
++LV+VG GG GK+ + + F Y+PTI + + + R DTAGQE
Sbjct: 6 YRLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIE-DSYTKQCVIDDRAARLDILDTAGQE 64
Query: 74 KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCR--VCENIPIVLCGNK--VDV 129
+FG +R+ Y G+ +++F VT R +++ + + R + R + P++L GNK +D
Sbjct: 65 EFGAMREQYMRTGEGFLLVFSVTDRGSFEEIYKFQRQILRVKDRDEFPMILIGNKADLDH 124
Query: 130 KNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
+ + + + R+ + Y E SAK N ++ F L R +
Sbjct: 125 QRQVTQEEGQQLARQLKVTYMEASAKIRMNVDQAFHELVRVI 166
|
| >d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} Length = 171 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: di-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 93.9 bits (232), Expect = 3e-25
Identities = 38/161 (23%), Positives = 70/161 (43%), Gaps = 6/161 (3%)
Query: 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
+++ + G GG GK++ V R + G F + Y PT+ + DT G
Sbjct: 3 YRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQ-VISCDKSICTLQITDTTGSH 61
Query: 74 KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV---CENIPIVLCGNK--VD 128
+F ++ G I+++ +T+R + + + + +C + E+IPI+L GNK
Sbjct: 62 QFPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDES 121
Query: 129 VKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLAR 169
++ R + E SAK N+N ++ F L
Sbjct: 122 PSREVQSSEAEALARTWKCAFMETSAKLNHNVKELFQELLN 162
|
| >d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]} Length = 173 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras species: Human (Homo sapiens) [TaxId: 9606]
Score = 93.2 bits (230), Expect = 5e-25
Identities = 46/163 (28%), Positives = 82/163 (50%), Gaps = 5/163 (3%)
Query: 13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQ 72
+ KLV+VG GG GK+ + + F Y+P + + + R DTAGQ
Sbjct: 6 THKLVVVGGGGVGKSALTIQFIQSYFVSDYDP-TIEDSYTKICSVDGIPARLDILDTAGQ 64
Query: 73 EKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVK 130
E+FG +R+ Y G +++F + R ++ V + RV ++ P+VL GNK D++
Sbjct: 65 EEFGAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLE 124
Query: 131 NRQV--KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
+++ +++ F ++ Y+E SAK N ++ F L R +
Sbjct: 125 SQRQVPRSEASAFGASHHVAYFEASAKLRLNVDEAFEQLVRAV 167
|
| >d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]} Length = 177 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoA species: Human (Homo sapiens) [TaxId: 9606]
Score = 89.3 bits (220), Expect = 2e-23
Identities = 46/174 (26%), Positives = 76/174 (43%), Gaps = 17/174 (9%)
Query: 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
KLVIVGDG GKT + + +F + Y PT+ E + D + ++ WDTAG E
Sbjct: 3 KKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVF-ENYVADIEVDGKQVELALWDTAGLE 61
Query: 74 KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCR-VCENIPIVLCGNKVDVKNR 132
+ LR Y ++ F + + + +N+P + C N+PI+L GNK D++N
Sbjct: 62 DYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRND 121
Query: 133 QVKAKQVTFHRK---------------KNLQYYEISAKSNYNFEKPFLYLARKL 171
+ +++ ++ Y E SAK+ + F R
Sbjct: 122 EHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAA 175
|
| >d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} Length = 160 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF1 [TaxId: 9606]
Score = 88.9 bits (219), Expect = 2e-23
Identities = 33/164 (20%), Positives = 57/164 (34%), Gaps = 12/164 (7%)
Query: 15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK 74
++++VG GKTT + + GE T + I F WD GQ+K
Sbjct: 2 RILMVGLDAAGKTTILYKLKLGEI-----VTTIPTIGFNVETVEYKNISFTVWDVGGQDK 56
Query: 75 FGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCR--VCENIPIVLCGNKVDVKNR 132
L Y+ + Q I + D R + + +++ NK D+ N
Sbjct: 57 IRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNA 116
Query: 133 QVKAK-----QVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
A+ + R +N A S + +L+ +L
Sbjct: 117 MNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQL 160
|
| >d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]} Length = 185 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoQ species: Human (Homo sapiens) [TaxId: 9606]
Score = 89.3 bits (220), Expect = 2e-23
Identities = 37/173 (21%), Positives = 64/173 (36%), Gaps = 17/173 (9%)
Query: 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
K V+VGDG GKT + + F ++Y PT+ + +DTAGQE
Sbjct: 10 LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGK-QYLLGLYDTAGQE 68
Query: 74 KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCR-VCENIPIVLCGNKVDVKNR 132
+ LR Y +I F V +++NV + N+P +L G ++D+++
Sbjct: 69 DYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPFLLIGTQIDLRDD 128
Query: 133 QVKAKQVTFHRK---------------KNLQYYEISAKSNYNFEKPFLYLARK 170
++ ++ Y E SA + + F
Sbjct: 129 PKTLARLNDMKEKPICVEQGQKLAKEIGACCYVECSALTQKGLKTVFDEAIIA 181
|
| >d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} Length = 179 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoE (RND3) species: Mouse (Mus musculus) [TaxId: 10090]
Score = 85.9 bits (211), Expect = 4e-22
Identities = 40/174 (22%), Positives = 68/174 (39%), Gaps = 17/174 (9%)
Query: 15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK 74
K+V+VGD GKT + F + Y PT+ E + F + +I WDT+G
Sbjct: 4 KIVVVGDSQCGKTALLHVFAKDCFPENYVPTV-FENYTASFEIDTQRIELSLWDTSGSPY 62
Query: 75 FGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDL-CRVCENIPIVLCGNKVDVKNRQ 133
+ +R Y +I FD++ T +V + C N ++L G K D++
Sbjct: 63 YDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDV 122
Query: 134 VKAKQVTFHRKK---------------NLQYYEISAKSNYNFEKPFLYLARKLA 172
+++ HR+ Y E SA + N + ++A
Sbjct: 123 STLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIFHVATLAC 176
|
| >d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]} Length = 173 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF6 [TaxId: 9606]
Score = 82.3 bits (202), Expect = 6e-21
Identities = 32/165 (19%), Positives = 55/165 (33%), Gaps = 12/165 (7%)
Query: 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
+++++G GKTT + + G+ T V ++F WD GQ+
Sbjct: 13 MRILMLGLDAAGKTTILYKLKLGQS-----VTTIPTVGFNVETVTYKNVKFNVWDVGGQD 67
Query: 74 KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCE--NIPIVLCGNKVDVKN 131
K L YY Q I + D R + E + I++ NK D+ +
Sbjct: 68 KIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPD 127
Query: 132 RQVKAK-----QVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
+ +T R +N A S + +L
Sbjct: 128 AMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLTSNY 172
|
| >d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} Length = 164 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL8A [TaxId: 9606]
Score = 81.3 bits (199), Expect = 2e-20
Identities = 36/163 (22%), Positives = 68/163 (41%), Gaps = 11/163 (6%)
Query: 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
+L +VG +GKTTFV +G+F + PT+G + + G + WD GQ
Sbjct: 3 MELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRKI----TKGNVTIKLWDIGGQP 58
Query: 74 KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKN 131
+F + + Y + M D + + +L + IP+++ GNK D+
Sbjct: 59 RFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPG 118
Query: 132 -----RQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLAR 169
++ ++ + + + Y IS K N + +L +
Sbjct: 119 ALDEKELIEKMNLSAIQDREICCYSISCKEKDNIDITLQWLIQ 161
|
| >d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} Length = 176 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL3 [TaxId: 10090]
Score = 79.6 bits (195), Expect = 9e-20
Identities = 24/166 (14%), Positives = 55/166 (33%), Gaps = 12/166 (7%)
Query: 13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQ 72
+++++G GKTT +K+ + + + WD GQ
Sbjct: 16 EVRILLLGLDNAGKTTLLKQLASEDISHITPT-----QGFNIKSVQSQGFKLNVWDIGGQ 70
Query: 73 EKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVK 130
K Y+ + I + D R ++ +L +P+++ NK D+
Sbjct: 71 RKIRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLL 130
Query: 131 NRQVKAK-----QVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
++ + R + Q SA + + ++ + +
Sbjct: 131 TAAPASEIAEGLNLHTIRDRVWQIQSCSALTGEGVQDGMNWVCKNV 176
|
| >d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]} Length = 175 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Centaurin gamma 1, G domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 78.5 bits (192), Expect = 2e-19
Identities = 28/169 (16%), Positives = 58/169 (34%), Gaps = 16/169 (9%)
Query: 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAG 71
P +L ++GD +GK++ + R LTG ++ + + + A
Sbjct: 4 PELRLGVLGDARSGKSSLIHRFLTGSYQVLEKTESEQYKKEMLVDGQTHLVLIREEAGAP 63
Query: 72 QEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC----ENIPIVLCGNKV 127
K + I +F + +++ V H L + + + L G +
Sbjct: 64 DAK-------FSGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQD 116
Query: 128 DVKNRQVKAK-----QVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
+ + + K YYE A N ++ F +A+K+
Sbjct: 117 RISASSPRVVGDARARALCADMKRCSYYETCATYGLNVDRVFQEVAQKV 165
|
| >d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]} Length = 168 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-like estrogen-regulated growth inhibitor, RERG species: Human (Homo sapiens) [TaxId: 9606]
Score = 78.1 bits (191), Expect = 2e-19
Identities = 39/163 (23%), Positives = 71/163 (43%), Gaps = 7/163 (4%)
Query: 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
KL I G G GK+ V R LT F +Y+PT+ E T ++ +
Sbjct: 3 VKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTL--ESTYRHQATIDDEVVSMEILDTAGQ 60
Query: 74 KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCE--NIPIVLCGNKV--DV 129
+ R+G+ G+ ++++D+T R +++ V L + + N+ ++L GNK D
Sbjct: 61 EDTIQREGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDH 120
Query: 130 KNRQVKAKQVTFHRKKNLQYYEISAKSNY-NFEKPFLYLARKL 171
+ + + +YE SA + N + F L R++
Sbjct: 121 SRQVSTEEGEKLATELACAFYECSACTGEGNITEIFYELCREV 163
|
| >d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]} Length = 182 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]
Score = 78.1 bits (191), Expect = 4e-19
Identities = 32/165 (19%), Positives = 55/165 (33%), Gaps = 12/165 (7%)
Query: 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
+++I+G G GKTT + R GE PTIG V L ++ WD GQ
Sbjct: 18 LRILILGLDGAGKTTILYRLQIGEVVTTK-PTIGFNVETLS----YKNLKLNVWDLGGQT 72
Query: 74 KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKN 131
YY I + D T + + + ++ +++ NK D
Sbjct: 73 SIRPYWRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPG 132
Query: 132 -----RQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
K + + ++ SA + +L +
Sbjct: 133 ALSASEVSKELNLVELKDRSWSIVASSAIKGEGITEGLDWLIDVI 177
|
| >d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]} Length = 167 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein RheB species: Human (Homo sapiens) [TaxId: 9606]
Score = 77.5 bits (189), Expect = 4e-19
Identities = 40/162 (24%), Positives = 62/162 (38%), Gaps = 5/162 (3%)
Query: 13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQ 72
S K+ I+G GK++ + + G+F Y+PTI L N + DTAGQ
Sbjct: 4 SRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKL-ITVNGQEYHLQLVDTAGQ 62
Query: 73 EKFGGLRDGYYIHGQCAIIMFDVT--ARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDV- 129
+++ Y I I+++ VT V IPI+L GNK D+
Sbjct: 63 DEYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLH 122
Query: 130 -KNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARK 170
+ + N + E SAK N F + +
Sbjct: 123 MERVISYEEGKALAESWNAAFLESSAKENQTAVDVFRRIILE 164
|
| >d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} Length = 165 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL2 [TaxId: 10090]
Score = 76.2 bits (186), Expect = 1e-18
Identities = 26/166 (15%), Positives = 56/166 (33%), Gaps = 12/166 (7%)
Query: 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
+L+++G GKTT +K+ + + TI + + WD GQ+
Sbjct: 3 LRLLMLGLDNAGKTTILKKFNGEDVD-----TISPTLGFNIKTLEHRGFKLNIWDVGGQK 57
Query: 74 KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCR--VCENIPIVLCGNKVDVKN 131
Y+ I + D R ++ + L +++ NK D+
Sbjct: 58 SLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPG 117
Query: 132 R-----QVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLA 172
+A ++ R + + SA + + +L ++
Sbjct: 118 ALSCNAIQEALELDSIRSHHWRIQGCSAVTGEDLLPGIDWLLDDIS 163
|
| >d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]} Length = 172 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein GEM species: Human (Homo sapiens) [TaxId: 9606]
Score = 74.8 bits (182), Expect = 5e-18
Identities = 27/164 (16%), Positives = 58/164 (35%), Gaps = 6/164 (3%)
Query: 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIR----FYCWDT 69
+++V++G+ G GK+T + + E G+ W+
Sbjct: 4 YRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWEN 63
Query: 70 AGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDV 129
G+ ++ + A + R E+IPI+L GNK D+
Sbjct: 64 KGENEWLHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDL 123
Query: 130 KNRQV--KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
+ ++ + ++ E SA +N ++ F + R++
Sbjct: 124 VRCREVSVSEGRACAVVFDCKFIETSAAVQHNVKELFEGIVRQV 167
|
| >d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]} Length = 168 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rad species: Human (Homo sapiens) [TaxId: 9606]
Score = 73.6 bits (179), Expect = 1e-17
Identities = 22/160 (13%), Positives = 51/160 (31%), Gaps = 2/160 (1%)
Query: 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
+K++++G G GK+ + E + E + + Y
Sbjct: 2 YKVLLLGAPGVGKSALARIFGGVEDGPEAEAAGHTYDRSIVVDGEEASLMVYDIWEQDGG 61
Query: 74 KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDV--KN 131
++ + + R +++PI+L GNK D+
Sbjct: 62 RWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSR 121
Query: 132 RQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
+ + ++ E SA ++N + F + R++
Sbjct: 122 EVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVVRQI 161
|
| >d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} Length = 177 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL5A [TaxId: 9606]
Score = 72.7 bits (177), Expect = 3e-17
Identities = 30/165 (18%), Positives = 54/165 (32%), Gaps = 12/165 (7%)
Query: 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
K++IVG GKTT + + E + RF WD GQE
Sbjct: 16 HKVIIVGLDNAGKTTILYQFSMNEV-----VHTSPTIGSNVEEIVINNTRFLMWDIGGQE 70
Query: 74 KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCEN--IPIVLCGNKVDVKN 131
+ YY + + I++ D T R + + +++ NK DVK
Sbjct: 71 SLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKE 130
Query: 132 RQV-----KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
+ ++T + A + + ++ +L
Sbjct: 131 CMTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWMMSRL 175
|
| >d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} Length = 169 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL1 [TaxId: 9606]
Score = 71.3 bits (173), Expect = 1e-16
Identities = 29/165 (17%), Positives = 54/165 (32%), Gaps = 12/165 (7%)
Query: 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
+++I+G G GKTT + R GE T + ++F WD G
Sbjct: 6 MRILILGLDGAGKTTILYRLQVGEV-----VTTIPTIGFNVETVTYKNLKFQVWDLGGLT 60
Query: 74 KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCR--VCENIPIVLCGNKVDVKN 131
YY + I + D R + + +V+ NK D++
Sbjct: 61 SIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQ 120
Query: 132 RQVKAKQVT-----FHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
++ + + Q ++ SA ++ +L L
Sbjct: 121 AMTSSEMANSLGLPALKDRKWQIFKTSATKGTGLDEAMEWLVETL 165
|
| >d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 166 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 70.5 bits (171), Expect = 2e-16
Identities = 31/169 (18%), Positives = 60/169 (35%), Gaps = 19/169 (11%)
Query: 15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK 74
KL+ +G GKTT + T+ HP G I+F +D G +
Sbjct: 2 KLLFLGLDNAGKTTLLHMLKNDRL-----ATLQPTWHPTSEELAIGNIKFTTFDLGGHIQ 56
Query: 75 FGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCE--NIPIVLCGNKVDVKNR 132
L Y+ + + D + L + E ++P V+ GNK+D N
Sbjct: 57 ARRLWKDYFPEVNGIVFLVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPNA 116
Query: 133 QVKAKQVT------------FHRKKNLQYYEISAKSNYNFEKPFLYLAR 169
+A+ + ++ ++ + S + + F +L++
Sbjct: 117 VSEAELRSALGLLNTTGSQRIEGQRPVEVFMCSVVMRNGYLEAFQWLSQ 165
|
| >d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} Length = 186 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Score = 67.4 bits (163), Expect = 4e-15
Identities = 27/178 (15%), Positives = 53/178 (29%), Gaps = 24/178 (13%)
Query: 13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQ 72
+ KLV +G GKTT + + HP + F +D G
Sbjct: 13 TGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTL-----HPTSEELTIAGMTFTTFDLGGH 67
Query: 73 EKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVK 130
+ + Y + + D L N+PI++ GNK+D
Sbjct: 68 IQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRP 127
Query: 131 NRQVKAK-----------------QVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
+ + + + L+ + S + + F ++A+ +
Sbjct: 128 EAISEERLREMFGLYGQTTGKGSVSLKELNARPLEVFMCSVLKRQGYGEGFRWMAQYI 185
|
| >d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} Length = 200 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Score = 64.1 bits (155), Expect = 9e-14
Identities = 25/168 (14%), Positives = 50/168 (29%), Gaps = 19/168 (11%)
Query: 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
K++++G G +GK+TF+K+ +PT G+ + + F D GQ
Sbjct: 3 VKILLLGAGESGKSTFLKQM---RIIHGQDPTKGIHEYDFEIKNVP----FKMVDVGGQR 55
Query: 74 KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCE------------NIPIV 121
+ + + + L N+ I+
Sbjct: 56 SERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVSII 115
Query: 122 LCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLAR 169
L NK D+ +V+ + + + + F R
Sbjct: 116 LFLNKTDLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFLVECFRGKRR 163
|
| >d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]} Length = 221 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Cow (Bos taurus) [TaxId: 9913]
Score = 64.0 bits (155), Expect = 1e-13
Identities = 25/142 (17%), Positives = 46/142 (32%), Gaps = 20/142 (14%)
Query: 13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQ 72
+ +L+++G G +GK+T VK+ T G+ K+ F+ +D GQ
Sbjct: 6 THRLLLLGAGESGKSTIVKQMRILHV----VLTSGIFETKFQV----DKVNFHMFDVGGQ 57
Query: 73 EKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLC------------RVCENIPI 120
+ I + ++ L R I +
Sbjct: 58 RDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRTISV 117
Query: 121 VLCGNKVDVKNRQVKAKQVTFH 142
+L NK D+ +V A +
Sbjct: 118 ILFLNKQDLLAEKVLAGKSKIE 139
|
| >d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} Length = 200 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Score = 62.3 bits (150), Expect = 4e-13
Identities = 26/169 (15%), Positives = 55/169 (32%), Gaps = 18/169 (10%)
Query: 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
KL+++G G +GK+TF+K+ PT G+ +P D + F D GQ
Sbjct: 3 LKLLLLGTGESGKSTFIKQMRIIHGS--GVPTTGIIEYPFDLQSVI----FRMVDVGGQR 56
Query: 74 KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLC------------RVCENIPIV 121
+ + + + ++ + +N ++
Sbjct: 57 SERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVI 116
Query: 122 LCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARK 170
L NK D+ ++ + + + + + K F+ L
Sbjct: 117 LFLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPD 165
|
| >d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} Length = 207 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Mouse (Mus musculus) [TaxId: 10090]
Score = 61.2 bits (147), Expect = 1e-12
Identities = 23/164 (14%), Positives = 52/164 (31%), Gaps = 16/164 (9%)
Query: 15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK 74
++ VG +GKT R LTG++ + + +I N G +
Sbjct: 2 AVLFVGLCDSGKTLLFVRLLTGQY-RDTQTSITDSSAIYKVNNNRGNSLTLIDLPGHESL 60
Query: 75 FGGLRDGYYIHGQCAIIMFDVTARL-----TYKNVPTWHRDLCRVCENIPIVLCGNKVDV 129
L D + + + + D A + + D + + +++ NK D+
Sbjct: 61 RFQLLDRFKSSARAVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDI 120
Query: 130 KN----RQVKAK------QVTFHRKKNLQYYEISAKSNYNFEKP 163
+ ++ + + R + S+ + K
Sbjct: 121 AMAKSAKLIQQQLEKELNTLRVTRSAAPSTLDSSSTAPAQLGKK 164
|
| >d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]} Length = 161 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable tRNA modification GTPase TrmE (MnmE), G domain species: Escherichia coli [TaxId: 562]
Score = 56.7 bits (135), Expect = 3e-11
Identities = 30/166 (18%), Positives = 54/166 (32%), Gaps = 14/166 (8%)
Query: 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
K+VI G GK++ + L G G L + + + DTAG
Sbjct: 2 MKVVIAGRPNAGKSSLLNA-LAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLR 60
Query: 74 KFGGLRDGYYI--------HGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGN 125
+ + I + M D T W + R+ +PI + N
Sbjct: 61 EASDEVERIGIERAWQEIEQADRVLFMVDGTTTDAVDPAEIWPEFIARLPAKLPITVVRN 120
Query: 126 KVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
K D+ + +V H +SA++ + +L + +
Sbjct: 121 KADITGETLGMSEVNGH-----ALIRLSARTGEGVDVLRNHLKQSM 161
|
| >d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 195 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 56.1 bits (134), Expect = 8e-11
Identities = 27/169 (15%), Positives = 53/169 (31%), Gaps = 22/169 (13%)
Query: 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
KL+++G G +GK+T VK+ + +E G+ F F +D GQ
Sbjct: 3 VKLLLLGAGESGKSTIVKQ-----MKIIHEAGTGIVETHFTFKDLH----FKMFDVGGQR 53
Query: 74 KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDL------------CRVCENIPIV 121
+ I ++ + + + I+
Sbjct: 54 SERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSII 113
Query: 122 LCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARK 170
L NK D+ ++K +T + + Y + F L ++
Sbjct: 114 LFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAY-IQCQFEDLNKR 161
|
| >d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]} Length = 180 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Thermus thermophilus [TaxId: 274]
Score = 47.0 bits (110), Expect = 2e-07
Identities = 23/154 (14%), Positives = 42/154 (27%), Gaps = 10/154 (6%)
Query: 18 IVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAG------ 71
+VG GK++ + +T K L + RF D G
Sbjct: 6 LVGYPNAGKSSLLAA-MTRAHPKIAPYPFTTLSPNLGVVEVSEEERFTLADIPGIIEGAS 64
Query: 72 -QEKFGG--LRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVD 128
+ G LR ++ T + + P ++ NKVD
Sbjct: 65 EGKGLGLEFLRHIARTRVLLYVLDAADEPLKTLETLRKEVGAYDPALLRRPSLVALNKVD 124
Query: 129 VKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEK 162
+ + ++ L +SA +
Sbjct: 125 LLEEEAVKALADALAREGLAVLPVSALTGAGLPA 158
|
| >d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} Length = 186 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Score = 46.2 bits (108), Expect = 2e-07
Identities = 25/166 (15%), Positives = 52/166 (31%), Gaps = 17/166 (10%)
Query: 13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQ 72
+ K+ IVG GK+T + + P G P+D ++ DTAG
Sbjct: 8 AIKVAIVGRPNVGKSTLFNA-ILNKERALVSPIPGTTRDPVDDEVFIDGRKYVFVDTAGL 66
Query: 73 EKFGGLRDGYYIHGQCA----------IIMFDVTARLTYKNVPTWHRDLCRVCENIPIVL 122
+ + +++ + A L +V+
Sbjct: 67 RRKSRVEPRTVEKYSNYRVVDSIEKADVVVIVLDATQGITRQDQRMAGLMERRGRASVVV 126
Query: 123 CGNKVDVKNRQVKAKQVTFHRKKNLQYYE------ISAKSNYNFEK 162
V +R+ + + T ++ L + + SA +N ++
Sbjct: 127 FNKWDLVVHREKRYDEFTKLFREKLYFIDYSPLIFTSADKGWNIDR 172
|
| >d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 209 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 46.2 bits (108), Expect = 4e-07
Identities = 26/167 (15%), Positives = 45/167 (26%), Gaps = 26/167 (15%)
Query: 16 LVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKF 75
++I G +GKT+ + LT + V + D G K
Sbjct: 6 IIIAGPQNSGKTSLLTL-LTTD-----SVRPTVVSQEPLSAADYDGSGVTLVDFPGHVKL 59
Query: 76 GGLRDGYYIHGQCAIIMF-----DVTARLTYKNVPTWHRDLCRVCE-----NIPIVLCGN 125
Y + + D+ + E I I++ N
Sbjct: 60 RYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACN 119
Query: 126 KVDVKNRQVKAK----------QVTFHRKKNLQYYEISAKSNYNFEK 162
K ++ + +K +V RKK+L E E
Sbjct: 120 KSELFTARPPSKIKDALESEIQKVIERRKKSLNEVERKINEEDYAEN 166
|
| >d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} Length = 171 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Score = 45.5 bits (106), Expect = 4e-07
Identities = 26/161 (16%), Positives = 47/161 (29%), Gaps = 7/161 (4%)
Query: 17 VIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFG 76
+IVG GK+T + L + + E GV P+ F DT G
Sbjct: 4 LIVGRPNVGKSTLFNK-LVKKKKAIVEDEEGVTRDPVQDTVEWYGKTFKLVDTCGVFDNP 62
Query: 77 GLRDGYYIHGQC------AIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVK 130
+ A ++ V + +L NK +
Sbjct: 63 QDIISQKMKEVTLNMIREADLVLFVVDGKRGITKEDESLADFLRKSTVDTILVANKAENL 122
Query: 131 NRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
+ + + + +SA+ N N + + +KL
Sbjct: 123 REFEREVKPELYSLGFGEPIPVSAEHNINLDTMLETIIKKL 163
|
| >d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]} Length = 400 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-inducible GTPase species: Mouse (Mus musculus) [TaxId: 10090]
Score = 45.1 bits (106), Expect = 1e-06
Identities = 26/164 (15%), Positives = 51/164 (31%), Gaps = 15/164 (9%)
Query: 7 QTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLD--FFTNCGKIRF 64
+ +D + + G+ G+GK++F+ E++ GV ++ + +
Sbjct: 50 KEIDSSVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHPNIPNV 109
Query: 65 YCWDTAGQEKFGGLRDGY---YIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCE--NIP 119
WD G D Y + + R D+ +
Sbjct: 110 VFWDLPGIGSTNFPPDTYLEKMKFYEYDFFIIISATRFKK-----NDIDIAKAISMMKKE 164
Query: 120 IVLCGNKVD-VKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEK 162
KVD + + TF ++K LQ +I F +
Sbjct: 165 FYFVRTKVDSDITNEADGEPQTFDKEKVLQ--DIRLNCVNTFRE 206
|
| >d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]} Length = 178 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Thermus thermophilus [TaxId: 274]
Score = 44.0 bits (102), Expect = 2e-06
Identities = 29/166 (17%), Positives = 46/166 (27%), Gaps = 8/166 (4%)
Query: 13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQ 72
S + IVG GK+T + L G P L G+ + DT G
Sbjct: 5 SGFVAIVGKPNVGKSTLLNN-LLGVKVAPISPRPQTTRKRLRGILTEGRRQIVFVDTPGL 63
Query: 73 EKFGGLRDGYYIHGQCAIIMFDVTARLT-------YKNVPTWHRDLCRVCENIPIVLCGN 125
K + + R L + +PI+L GN
Sbjct: 64 HKPMDALGEFMDQEVYEALADVNAVVWVVDLRHPPTPEDELVARALKPLVGKVPILLVGN 123
Query: 126 KVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
K+D +A + + +SA + L +
Sbjct: 124 KLDAAKYPEEAMKAYHELLPEAEPRMLSALDERQVAELKADLLALM 169
|
| >d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]} Length = 185 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Bacillus subtilis [TaxId: 1423]
Score = 41.5 bits (96), Expect = 1e-05
Identities = 23/167 (13%), Positives = 45/167 (26%), Gaps = 14/167 (8%)
Query: 18 IVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGG 77
+VG GK+T + ++ K + V L F D G +
Sbjct: 6 LVGFPSVGKSTLLSV-VSSAKPKIADYHFTTLVPNLGMVETDDGRSFVMADLPGLIEGAH 64
Query: 78 LRDG-------------YYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCG 124
G +H + Y + + P ++
Sbjct: 65 QGVGLGHQFLRHIERTRVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVA 124
Query: 125 NKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
NK+D+ + + + ISA + + +A +L
Sbjct: 125 NKMDMPEAAENLEAFKEKLTDDYPVFPISAVTREGLRELLFEVANQL 171
|
| >d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]} Length = 160 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: TrmE GTPase domain species: Thermotoga maritima [TaxId: 2336]
Score = 40.7 bits (94), Expect = 2e-05
Identities = 34/155 (21%), Positives = 58/155 (37%), Gaps = 12/155 (7%)
Query: 15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAG-QE 73
++VIVG GK+T + R L E G + I F DTAG +
Sbjct: 2 RMVIVGKPNVGKSTLLNR-LLNEDRAIVTDIPGTTRDVISEEIVIRGILFRIVDTAGVRS 60
Query: 74 KFGGLRDGYYIH------GQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKV 127
+ L + I + I++F + A + R + +N ++ NKV
Sbjct: 61 ETNDLVERLGIERTLQEIEKADIVLFVLDA---SSPLDEEDRKILERIKNKRYLVVINKV 117
Query: 128 DVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEK 162
DV + + +++ + +ISA EK
Sbjct: 118 DVVEKINE-EEIKNKLGTDRHMVKISALKGEGLEK 151
|
| >d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 179 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Escherichia coli [TaxId: 562]
Score = 40.1 bits (92), Expect = 4e-05
Identities = 28/163 (17%), Positives = 49/163 (30%), Gaps = 9/163 (5%)
Query: 17 VIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFG 76
IVG GK+T + + L G+ H + G + DT G
Sbjct: 9 AIVGRPNVGKSTLLNK-LLGQKISITSRKAQTTRHRIVGIHTEGAYQAIYVDTPGLHMEE 67
Query: 77 GLRDGYYIHGQCAIIMFDV--------TARLTYKNVPTWHRDLCRVCENIPIVLCGNKVD 128
++ + + DV R T + ++ I V + V
Sbjct: 68 KRAINRLMNKAASSSIGDVELVIFVVEGTRWTPDDEMVLNKLREGKAPVILAVNKVDNVQ 127
Query: 129 VKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
K + Q + L ISA++ N + + + L
Sbjct: 128 EKADLLPHLQFLASQMNFLDIVPISAETGLNVDTIAAIVRKHL 170
|
| >d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]} Length = 195 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Bacillus subtilis [TaxId: 1423]
Score = 38.2 bits (87), Expect = 2e-04
Identities = 17/169 (10%), Positives = 51/169 (30%), Gaps = 12/169 (7%)
Query: 15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGK-------IRFYCW 67
++ + G GK++F+ + + + G + N F
Sbjct: 25 EIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYIINDELHFVDVPGYGFAKV 84
Query: 68 DTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKV 127
+ +E +G + + Y + + + + IP+++ K
Sbjct: 85 SKSEREAWGRMIETYITTREELKAVVQIVDLRHAPSNDDVQMYEFLKYYGIPVIVIATKA 144
Query: 128 DVKNRQVKAKQVTFHRKK-----NLQYYEISAKSNYNFEKPFLYLARKL 171
D + K R+ + S+++ ++ + + + +
Sbjct: 145 DKIPKGKWDKHAKVVRQTLNIDPEDELILFSSETKKGKDEAWGAIKKMI 193
|
| >d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]} Length = 170 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Escherichia coli [TaxId: 562]
Score = 35.3 bits (80), Expect = 0.001
Identities = 16/101 (15%), Positives = 28/101 (27%), Gaps = 1/101 (0%)
Query: 16 LVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKF 75
L GTGKTT + + L + ++ D + Y AG +
Sbjct: 5 LAFAAWSGTGKTTLL-KKLIPALCARGIRPGLIKHTHHDMDVDKPGKDSYELRKAGAAQT 63
Query: 76 GGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCE 116
+ ++ + + T DL V
Sbjct: 64 IVASQQRWALMTETPDEEELDLQFLASRMDTSKLDLILVEG 104
|
| >d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]} Length = 188 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Escherichia coli [TaxId: 562]
Score = 34.0 bits (76), Expect = 0.004
Identities = 18/162 (11%), Positives = 43/162 (26%), Gaps = 13/162 (8%)
Query: 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
++ G GK++ + + + T G F GK E
Sbjct: 17 IEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVADGKRLVDLPGYGYAE 76
Query: 74 KFGGLRDGYYIH--------GQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGN 125
++ + ++ + R K++ + +VL
Sbjct: 77 VPEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAVDSNIAVLVLLTK 136
Query: 126 KVDVKNRQVKA-----KQVTFHRKKNLQYYEISAKSNYNFEK 162
+ + KA ++ ++Q S+ +K
Sbjct: 137 ADKLASGARKAQLNMVREAVLAFNGDVQVETFSSLKKQGVDK 178
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 176 | |||
| d1i2ma_ | 170 | Ran {Human (Homo sapiens) [TaxId: 9606]} | 100.0 | |
| d1z2aa1 | 164 | Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | 100.0 | |
| d2fn4a1 | 173 | r-Ras {Human (Homo sapiens) [TaxId: 9606]} | 100.0 | |
| d3raba_ | 169 | Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | 100.0 | |
| d1x1ra1 | 169 | Ras-related protein M-Ras (XRas) {Mouse (Mus muscu | 100.0 | |
| d1z08a1 | 167 | Rab21 {Human (Homo sapiens) [TaxId: 9606]} | 100.0 | |
| d1u8za_ | 168 | Ras-related protein RalA {Cotton-top tamarin (Sagu | 100.0 | |
| d2ew1a1 | 171 | Rab30 {Human (Homo sapiens) [TaxId: 9606]} | 100.0 | |
| d1yzqa1 | 164 | Rab6 {Human (Homo sapiens) [TaxId: 9606]} | 100.0 | |
| d1z0fa1 | 166 | Rab14 {Human (Homo sapiens) [TaxId: 9606]} | 100.0 | |
| d1z0ja1 | 167 | Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | 100.0 | |
| d1xtqa1 | 167 | GTP-binding protein RheB {Human (Homo sapiens) [Ta | 100.0 | |
| d2atxa1 | 185 | RhoQ {Human (Homo sapiens) [TaxId: 9606]} | 100.0 | |
| d1ctqa_ | 166 | cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9 | 100.0 | |
| d2erxa1 | 171 | di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 100.0 | |
| d2erya1 | 171 | r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 100.0 | |
| d1x3sa1 | 177 | Rab18 {Human (Homo sapiens) [TaxId: 9606]} | 100.0 | |
| d2bmea1 | 174 | Rab4a {Human (Homo sapiens) [TaxId: 9606]} | 100.0 | |
| d1r2qa_ | 170 | Rab5a {Human (Homo sapiens) [TaxId: 9606]} | 100.0 | |
| d1c1ya_ | 167 | Rap1A {Human (Homo sapiens) [TaxId: 9606]} | 100.0 | |
| d1kmqa_ | 177 | RhoA {Human (Homo sapiens) [TaxId: 9606]} | 100.0 | |
| d2gjsa1 | 168 | Rad {Human (Homo sapiens) [TaxId: 9606]} | 100.0 | |
| d1mh1a_ | 183 | Rac {Human (Homo sapiens) [TaxId: 9606]} | 100.0 | |
| d1kaoa_ | 167 | Rap2a {Human (Homo sapiens) [TaxId: 9606]} | 100.0 | |
| d2fu5c1 | 173 | Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | 100.0 | |
| d2ngra_ | 191 | CDC42 {Human (Homo sapiens) [TaxId: 9606]} | 100.0 | |
| d2bcgy1 | 194 | GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi | 100.0 | |
| d2a5ja1 | 173 | Rab2b {Human (Homo sapiens) [TaxId: 9606]} | 100.0 | |
| d2f9la1 | 175 | Rab11b {Human (Homo sapiens) [TaxId: 9606]} | 100.0 | |
| d1g16a_ | 166 | Rab-related protein Sec4 {Baker's yeast (Saccharom | 100.0 | |
| d1ek0a_ | 170 | Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T | 100.0 | |
| d2atva1 | 168 | Ras-like estrogen-regulated growth inhibitor, RERG | 100.0 | |
| d2g6ba1 | 170 | Rab26 {Human (Homo sapiens) [TaxId: 9606]} | 100.0 | |
| d1wmsa_ | 174 | Rab9a {Human (Homo sapiens) [TaxId: 9606]} | 100.0 | |
| d2f7sa1 | 186 | Rab27b {Human (Homo sapiens) [TaxId: 9606]} | 100.0 | |
| d1vg8a_ | 184 | Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | 100.0 | |
| d1ky3a_ | 175 | Rab-related protein ypt7p {Baker's yeast (Saccharo | 100.0 | |
| d2g3ya1 | 172 | GTP-binding protein GEM {Human (Homo sapiens) [Tax | 100.0 | |
| d1m7ba_ | 179 | RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | 100.0 | |
| d1z06a1 | 165 | Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | 100.0 | |
| d1zd9a1 | 164 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 100.0 | |
| d1ksha_ | 165 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 100.0 | |
| d1fzqa_ | 176 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 100.0 | |
| d2bmja1 | 175 | Centaurin gamma 1, G domain {Human (Homo sapiens) | 100.0 | |
| d1moza_ | 182 | ADP-ribosylation factor {Baker's yeast (Saccharomy | 100.0 | |
| d1e0sa_ | 173 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 100.0 | |
| d1r8sa_ | 160 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 99.98 | |
| d1zj6a1 | 177 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 99.97 | |
| d1upta_ | 169 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 99.96 | |
| d2qtvb1 | 166 | SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta | 99.96 | |
| d1wf3a1 | 178 | GTPase Era, N-terminal domain {Thermus thermophilu | 99.96 | |
| d2bcjq2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 99.95 | |
| d1svsa1 | 195 | Transducin (alpha subunit) {Rat (Rattus norvegicus | 99.95 | |
| d1f6ba_ | 186 | SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: | 99.95 | |
| d1udxa2 | 180 | Obg GTP-binding protein middle domain {Thermus the | 99.95 | |
| d2gj8a1 | 161 | Probable tRNA modification GTPase TrmE (MnmE), G d | 99.95 | |
| d1mkya1 | 171 | Probable GTPase Der, N-terminal and middle domains | 99.94 | |
| d1wb1a4 | 179 | Elongation factor SelB, N-terminal domain {Methano | 99.94 | |
| d1zcba2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 99.94 | |
| d1xzpa2 | 160 | TrmE GTPase domain {Thermotoga maritima [TaxId: 23 | 99.92 | |
| d2fh5b1 | 207 | Signal recognition particle receptor beta-subunit | 99.92 | |
| d1azta2 | 221 | Transducin (alpha subunit) {Cow (Bos taurus) [TaxI | 99.91 | |
| d1mkya2 | 186 | Probable GTPase Der, N-terminal and middle domains | 99.91 | |
| d1lnza2 | 185 | Obg GTP-binding protein middle domain {Bacillus su | 99.91 | |
| d2cxxa1 | 184 | GTP-binding protein engB {Pyrococcus horikoshii [T | 99.9 | |
| d1g7sa4 | 227 | Initiation factor IF2/eIF5b, N-terminal (G) domain | 99.9 | |
| d2qn6a3 | 205 | Initiation factor eIF2 gamma subunit, N-terminal ( | 99.9 | |
| d1svia_ | 195 | Probable GTPase EngB {Bacillus subtilis [TaxId: 14 | 99.9 | |
| d1kk1a3 | 195 | Initiation factor eIF2 gamma subunit, N-terminal ( | 99.89 | |
| d1d2ea3 | 196 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 99.89 | |
| d2c78a3 | 204 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 99.85 | |
| d1egaa1 | 179 | GTPase Era, N-terminal domain {Escherichia coli [T | 99.83 | |
| d1zunb3 | 222 | Sulfate adenylate transferase subunit cysN/C, EF-T | 99.83 | |
| d1nrjb_ | 209 | Signal recognition particle receptor beta-subunit | 99.8 | |
| d1jnya3 | 224 | Elongation factor eEF-1alpha, N-terminal (G) domai | 99.79 | |
| d1puia_ | 188 | Probable GTPase EngB {Escherichia coli [TaxId: 562 | 99.78 | |
| d1r5ba3 | 245 | Eukaryotic peptide chain release factor ERF2, G do | 99.77 | |
| d1f60a3 | 239 | Elongation factor eEF-1alpha, N-terminal (G) domai | 99.77 | |
| d2dy1a2 | 267 | Elongation factor G (EF-G), N-terminal (G) domain | 99.76 | |
| d2bv3a2 | 276 | Elongation factor G (EF-G), N-terminal (G) domain | 99.74 | |
| d1tq4a_ | 400 | Interferon-inducible GTPase {Mouse (Mus musculus) | 99.67 | |
| d1n0ua2 | 341 | Elongation factor 2 (eEF-2), N-terminal (G) domain | 99.65 | |
| d1h65a_ | 257 | Chloroplast protein translocon GTPase Toc34 {Garde | 99.61 | |
| d1yrba1 | 244 | ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss | 99.53 | |
| d2p67a1 | 327 | LAO/AO transport system kinase ArgK {Escherichia c | 99.34 | |
| d2qm8a1 | 323 | Metallochaperone MeaB {Methylobacterium extorquens | 99.28 | |
| d1wxqa1 | 319 | GTP-binding protein PH0525 {Pyrococcus horikoshii | 99.23 | |
| d2akab1 | 299 | Dynamin G domain {Rat (Rattus norvegicus) [TaxId: | 99.14 | |
| d1jwyb_ | 306 | Dynamin G domain {Dictyostelium discoideum [TaxId: | 99.04 | |
| d1jala1 | 278 | YchF GTP-binding protein N-terminal domain {Haemop | 99.02 | |
| d1ni3a1 | 296 | YchF GTP-binding protein N-terminal domain {Fissio | 98.93 | |
| d1puja_ | 273 | Probable GTPase YlqF {Bacillus subtilis [TaxId: 14 | 98.93 | |
| d1puja_ | 273 | Probable GTPase YlqF {Bacillus subtilis [TaxId: 14 | 98.83 | |
| d1u0la2 | 225 | Probable GTPase EngC (YjeQ), C-terminal domain {Th | 98.79 | |
| d1t9ha2 | 231 | Probable GTPase EngC (YjeQ), C-terminal domain {Ba | 98.57 | |
| d1u0la2 | 225 | Probable GTPase EngC (YjeQ), C-terminal domain {Th | 98.53 | |
| d1okkd2 | 207 | GTPase domain of the signal recognition particle r | 98.53 | |
| d1j8yf2 | 211 | GTPase domain of the signal sequence recognition p | 98.48 | |
| d1ye8a1 | 178 | Hypothetical kinase-like protein Aq_1292 {Aquifex | 98.46 | |
| d1vmaa2 | 213 | GTPase domain of the signal recognition particle r | 98.34 | |
| d1t9ha2 | 231 | Probable GTPase EngC (YjeQ), C-terminal domain {Ba | 98.3 | |
| d2qy9a2 | 211 | GTPase domain of the signal recognition particle r | 98.26 | |
| d1nija1 | 222 | Hypothetical protein YjiA, N-terminal domain {Esch | 98.09 | |
| d1y63a_ | 174 | Probable kinase LmjF30.1890 {Leishmania major [Tax | 98.07 | |
| d1ls1a2 | 207 | GTPase domain of the signal sequence recognition p | 98.06 | |
| d1lw7a2 | 192 | Transcriptional regulator NadR, ribosylnicotinamid | 98.02 | |
| d1rkba_ | 173 | Adenylate kinase {Human (Homo sapiens), isoenzyme | 97.94 | |
| d1ak2a1 | 190 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 97.94 | |
| d1np6a_ | 170 | Molybdopterin-guanine dinucleotide biosynthesis pr | 97.9 | |
| d1yj5a2 | 172 | 5' polynucleotide kinase-3' phosphatase, C-termina | 97.87 | |
| d1zina1 | 182 | Adenylate kinase {Bacillus stearothermophilus [Tax | 97.83 | |
| d2ak3a1 | 189 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 97.83 | |
| d1ly1a_ | 152 | Polynucleotide kinase, kinase domain {Bacteriophag | 97.81 | |
| d1zaka1 | 189 | Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | 97.78 | |
| d2cdna1 | 181 | Adenylate kinase {Mycobacterium tuberculosis [TaxI | 97.76 | |
| d1s3ga1 | 182 | Adenylate kinase {Bacillus globisporus [TaxId: 145 | 97.76 | |
| d1m8pa3 | 183 | ATP sulfurylase C-terminal domain {Fungus (Penicil | 97.76 | |
| d1kgda_ | 178 | Guanylate kinase-like domain of Cask {Human (Homo | 97.73 | |
| d1akya1 | 180 | Adenylate kinase {Baker's yeast (Saccharomyces cer | 97.73 | |
| d1e4va1 | 179 | Adenylate kinase {Escherichia coli [TaxId: 562]} | 97.71 | |
| d2bdta1 | 176 | Hypothetical protein BH3686 {Bacillus halodurans [ | 97.71 | |
| d1qf9a_ | 194 | UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4 | 97.71 | |
| d1kaga_ | 169 | Shikimate kinase (AroK) {Escherichia coli [TaxId: | 97.7 | |
| d1xjca_ | 165 | Molybdopterin-guanine dinucleotide biosynthesis pr | 97.69 | |
| d2iyva1 | 165 | Shikimate kinase (AroK) {Mycobacterium tuberculosi | 97.64 | |
| d2i3ba1 | 189 | Cancer-related NTPase, C1orf57 {Human (Homo sapien | 97.61 | |
| d1gkya_ | 186 | Guanylate kinase {Baker's yeast (Saccharomyces cer | 97.61 | |
| d1viaa_ | 161 | Shikimate kinase (AroK) {Campylobacter jejuni [Tax | 97.61 | |
| d1teva_ | 194 | UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606] | 97.59 | |
| d1bifa1 | 213 | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphata | 97.58 | |
| d1f5na2 | 277 | Interferon-induced guanylate-binding protein 1 (GB | 97.54 | |
| d2pmka1 | 241 | Haemolysin B ATP-binding protein {Escherichia coli | 97.49 | |
| d1sxje2 | 252 | Replication factor C5 {Baker's yeast (Saccharomyce | 97.48 | |
| d1khta_ | 190 | Adenylate kinase {Archaeon Methanococcus voltae [T | 97.46 | |
| d1knqa_ | 171 | Gluconate kinase {Escherichia coli [TaxId: 562]} | 97.46 | |
| d1zp6a1 | 176 | Hypothetical protein Atu3015 {Agrobacterium tumefa | 97.45 | |
| d1znwa1 | 182 | Guanylate kinase {Mycobacterium tuberculosis [TaxI | 97.44 | |
| d1qhxa_ | 178 | Chloramphenicol phosphotransferase {Streptomyces v | 97.4 | |
| d3b60a1 | 253 | Multidrug resistance ABC transporter MsbA, C-termi | 97.39 | |
| d1mv5a_ | 242 | Multidrug resistance ABC transporter LmrA, C-termi | 97.39 | |
| d1lvga_ | 190 | Guanylate kinase {Mouse (Mus musculus) [TaxId: 100 | 97.39 | |
| d1e6ca_ | 170 | Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax | 97.37 | |
| d1sgwa_ | 200 | Putative ABC transporter PF0895 {Pyrococcus furios | 97.37 | |
| d2awna2 | 232 | Maltose transport protein MalK, N-terminal domain | 97.36 | |
| d1jj7a_ | 251 | Peptide transporter Tap1, C-terminal ABC domain {H | 97.36 | |
| d1l2ta_ | 230 | MJ0796 {Archaeon Methanococcus jannaschii [TaxId: | 97.36 | |
| d1q3ta_ | 223 | CMP kinase {Streptococcus pneumoniae [TaxId: 1313] | 97.36 | |
| d1gvnb_ | 273 | Plasmid maintenance system epsilon/zeta, toxin zet | 97.34 | |
| d1s96a_ | 205 | Guanylate kinase {Escherichia coli [TaxId: 562]} | 97.34 | |
| d1ukza_ | 196 | Uridylate kinase {Baker's yeast (Saccharomyces cer | 97.32 | |
| d1x6va3 | 195 | Adenosine-5'phosphosulfate kinase (APS kinase) {Hu | 97.31 | |
| d2onka1 | 240 | Molybdate/tungstate import ATP-binding protein Wtp | 97.31 | |
| d1jbka_ | 195 | ClpB, AAA+ modules {Escherichia coli [TaxId: 562]} | 97.3 | |
| d3adka_ | 194 | Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | 97.29 | |
| d1r0wa_ | 281 | Cystic fibrosis transmembrane conductance regulato | 97.29 | |
| d1v43a3 | 239 | Hypothetical protein PH0022, N-terminal domain {Py | 97.29 | |
| d1rz3a_ | 198 | Hypothetical protein rbstp0775 {Bacillus stearothe | 97.27 | |
| d1uj2a_ | 213 | Uridine-cytidine kinase 2 {Human (Homo sapiens) [T | 97.26 | |
| d2hyda1 | 255 | Putative multidrug export ATP-binding/permease pro | 97.25 | |
| d3dhwc1 | 240 | Methionine import ATP-binding protein MetN {Escher | 97.25 | |
| d1nksa_ | 194 | Adenylate kinase {Archaeon Sulfolobus acidocaldari | 97.24 | |
| d1r6bx2 | 268 | ClpA, an Hsp100 chaperone, AAA+ modules {Escherich | 97.23 | |
| d1g2912 | 240 | Maltose transport protein MalK, N-terminal domain | 97.22 | |
| d1in4a2 | 238 | Holliday junction helicase RuvB {Thermotoga mariti | 97.22 | |
| d1ixsb2 | 239 | Holliday junction helicase RuvB {Thermus thermophi | 97.21 | |
| d3d31a2 | 229 | Sulfate/molybdate ABC transporter, ATP-binding pro | 97.2 | |
| d1ji0a_ | 240 | Branched chain aminoacid ABC transporter {Thermoto | 97.19 | |
| d1d2na_ | 246 | Hexamerization domain of N-ethylmalemide-sensitive | 97.18 | |
| d1vpla_ | 238 | Putative ABC transporter TM0544 {Thermotoga mariti | 97.14 | |
| d1g6oa_ | 323 | Hexameric traffic ATPase, HP0525 {Helicobacter pyl | 97.11 | |
| d1l7vc_ | 231 | ABC transporter involved in vitamin B12 uptake, Bt | 97.1 | |
| d2vp4a1 | 197 | Deoxyribonucleoside kinase {Fruit fly (Drosophila | 97.09 | |
| d1b0ua_ | 258 | ATP-binding subunit of the histidine permease {Sal | 97.06 | |
| d1ofha_ | 309 | HslU {Haemophilus influenzae [TaxId: 727]} | 97.05 | |
| d1iqpa2 | 231 | Replication factor C {Archaeon Pyrococcus furiosus | 97.03 | |
| d1fnna2 | 276 | CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T | 97.03 | |
| d1g6ha_ | 254 | MJ1267 {Archaeon Methanococcus jannaschii [TaxId: | 97.02 | |
| d1oxxk2 | 242 | Glucose transport protein GlcV, N-terminal domain | 97.01 | |
| d2fnaa2 | 283 | Archaeal ATPase SSO1545 {Sulfolobus solfataricus [ | 96.94 | |
| d1sxja2 | 253 | Replication factor C1 {Baker's yeast (Saccharomyce | 96.93 | |
| d1m7ga_ | 208 | Adenosine-5'phosphosulfate kinase (APS kinase) {Fu | 96.9 | |
| d1htwa_ | 158 | Hypothetical protein HI0065 {Haemophilus influenza | 96.86 | |
| d1ckea_ | 225 | CMP kinase {Escherichia coli [TaxId: 562]} | 96.85 | |
| d1w5sa2 | 287 | CDC6-like protein APE0152, N-terminal domain {Aero | 96.81 | |
| d1e32a2 | 258 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 96.8 | |
| d1uf9a_ | 191 | Dephospho-CoA kinase {Thermus thermophilus [TaxId: | 96.79 | |
| d1sq5a_ | 308 | Pantothenate kinase PanK {Escherichia coli [TaxId: | 96.78 | |
| d1ixza_ | 247 | AAA domain of cell division protein FtsH {Thermus | 96.74 | |
| d1g41a_ | 443 | HslU {Haemophilus influenzae [TaxId: 727]} | 96.74 | |
| d1sxjd2 | 237 | Replication factor C2 {Baker's yeast (Saccharomyce | 96.73 | |
| d1sxjb2 | 224 | Replication factor C4 {Baker's yeast (Saccharomyce | 96.72 | |
| d1lv7a_ | 256 | AAA domain of cell division protein FtsH {Escheric | 96.7 | |
| d1n0wa_ | 242 | DNA repair protein Rad51, catalytic domain {Human | 96.67 | |
| d1qvra2 | 387 | ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2 | 96.65 | |
| d1sxjc2 | 227 | Replication factor C3 {Baker's yeast (Saccharomyce | 96.64 | |
| d1szpa2 | 251 | DNA repair protein Rad51, catalytic domain {Baker' | 96.56 | |
| g1f2t.1 | 292 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 96.54 | |
| d1um8a_ | 364 | ClpX {Helicobacter pylori [TaxId: 210]} | 96.54 | |
| d1kkma_ | 176 | HPr kinase HprK C-terminal domain {Lactobacillus c | 96.53 | |
| d1pzna2 | 254 | DNA repair protein Rad51, catalytic domain {Archae | 96.5 | |
| d1gsia_ | 208 | Thymidylate kinase {Mycobacterium tuberculosis [Ta | 96.47 | |
| d1knxa2 | 177 | HPr kinase HprK C-terminal domain {Mycoplasma pneu | 96.44 | |
| d2a5yb3 | 277 | CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI | 96.43 | |
| d1odfa_ | 286 | Hypothetical protein Ygr205W {Baker's yeast (Sacch | 96.41 | |
| d1r7ra3 | 265 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 96.36 | |
| d4tmka_ | 210 | Thymidylate kinase {Escherichia coli [TaxId: 562]} | 96.3 | |
| d1ko7a2 | 169 | HPr kinase HprK C-terminal domain {Staphylococcus | 96.26 | |
| d1g8pa_ | 333 | ATPase subunit of magnesium chelatase, BchI {Rhodo | 96.2 | |
| d1svma_ | 362 | Papillomavirus large T antigen helicase domain {Si | 96.19 | |
| d1tf7a2 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 96.17 | |
| d1r6bx3 | 315 | ClpA, an Hsp100 chaperone, AAA+ modules {Escherich | 96.17 | |
| d1p5zb_ | 241 | Deoxycytidine kinase {Human (Homo sapiens) [TaxId: | 96.11 | |
| d1v5wa_ | 258 | Meiotic recombination protein DMC1/LIM15 homolog { | 96.07 | |
| d1nn5a_ | 209 | Thymidylate kinase {Human (Homo sapiens) [TaxId: 9 | 96.06 | |
| d1a7ja_ | 288 | Phosphoribulokinase {Rhodobacter sphaeroides [TaxI | 96.06 | |
| d2i1qa2 | 258 | DNA repair protein Rad51, catalytic domain {Archae | 96.01 | |
| g1xew.1 | 329 | Smc head domain {Pyrococcus furiosus [TaxId: 2261] | 95.99 | |
| d1qhla_ | 222 | Cell division protein MukB {Escherichia coli [TaxI | 95.94 | |
| d1vhta_ | 208 | Dephospho-CoA kinase {Escherichia coli [TaxId: 562 | 95.94 | |
| g1ii8.1 | 369 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 95.89 | |
| d1e69a_ | 308 | Smc head domain {Thermotoga maritima [TaxId: 2336] | 95.88 | |
| d1jjva_ | 205 | Dephospho-CoA kinase {Haemophilus influenzae [TaxI | 95.86 | |
| d1a5ta2 | 207 | delta prime subunit of DNA polymerase III, N-domai | 95.73 | |
| d1tf7a1 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 95.69 | |
| d1njfa_ | 239 | delta prime subunit of DNA polymerase III, N-domai | 95.63 | |
| d1p9ra_ | 401 | Extracellular secretion NTPase EpsE {Vibrio choler | 95.59 | |
| d1w44a_ | 321 | NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} | 95.57 | |
| d1osna_ | 331 | Thymidine kinase {Varicella-zoster virus [TaxId: 1 | 95.57 | |
| d2ocpa1 | 241 | Deoxyguanosine kinase {Human (Homo sapiens) [TaxId | 95.53 | |
| d1cr2a_ | 277 | Gene 4 protein (g4p, DNA primase), helicase domain | 95.45 | |
| d1tuea_ | 205 | Replication protein E1 helicase domain {Human papi | 95.34 | |
| d1tmka_ | 214 | Thymidylate kinase {Baker's yeast (Saccharomyces c | 95.34 | |
| d1w1wa_ | 427 | Smc head domain {Baker's yeast (Saccharomyces cere | 95.25 | |
| d1e2ka_ | 329 | Thymidine kinase {Herpes simplex virus type 1, dif | 95.13 | |
| d1nlfa_ | 274 | Hexameric replicative helicase repA {Escherichia c | 95.06 | |
| d1p6xa_ | 333 | Thymidine kinase {Equine herpesvirus type 4 [TaxId | 95.02 | |
| d1g8fa3 | 122 | ATP sulfurylase C-terminal domain {Baker's yeast ( | 94.99 | |
| d1qvra3 | 315 | ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2 | 94.92 | |
| d1l8qa2 | 213 | Chromosomal replication initiation factor DnaA {Aq | 94.85 | |
| d1uaaa1 | 306 | DEXX box DNA helicase {Escherichia coli, RepD [Tax | 94.78 | |
| d1pjra1 | 318 | DEXX box DNA helicase {Bacillus stearothermophilus | 94.74 | |
| d1deka_ | 241 | Deoxynucleoside monophosphate kinase {Bacteriophag | 94.64 | |
| d1xpua3 | 289 | Transcription termination factor Rho, ATPase domai | 94.5 | |
| d1e9ra_ | 433 | Bacterial conjugative coupling protein TrwB {Esche | 94.39 | |
| d1u94a1 | 263 | RecA protein, ATPase-domain {Escherichia coli [Tax | 93.81 | |
| d1u0ja_ | 267 | Rep 40 protein helicase domain {Adeno-associated v | 93.66 | |
| d1w36d1 | 359 | Exodeoxyribonuclease V alpha chain (RecD) {Escheri | 93.62 | |
| d2jdid3 | 276 | Central domain of beta subunit of F1 ATP synthase | 93.14 | |
| d1cp2a_ | 269 | Nitrogenase iron protein {Clostridium pasteurianum | 92.97 | |
| d1ny5a2 | 247 | Transcriptional activator sigm54 (NtrC1), C-termin | 92.85 | |
| d1g3qa_ | 237 | Cell division regulator MinD {Archaeon Pyrococcus | 92.67 | |
| d1c9ka_ | 180 | Adenosylcobinamide kinase/adenosylcobinamide phosp | 92.25 | |
| d2olra1 | 313 | Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo | 92.02 | |
| d1a1va1 | 136 | HCV helicase domain {Human hepatitis C virus (HCV) | 91.93 | |
| d1byia_ | 224 | Dethiobiotin synthetase {Escherichia coli [TaxId: | 91.78 | |
| d1wb9a2 | 234 | DNA repair protein MutS, the C-terminal domain {Es | 91.76 | |
| d1j3ba1 | 318 | Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo | 91.68 | |
| d1ii2a1 | 323 | Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo | 91.4 | |
| d1ewqa2 | 224 | DNA repair protein MutS, the C-terminal domain {Th | 91.37 | |
| d1xp8a1 | 268 | RecA protein, ATPase-domain {Deinococcus radiodura | 90.89 | |
| d1xbta1 | 133 | Thymidine kinase, TK1, N-terminal domain {Human (H | 90.72 | |
| d1mo6a1 | 269 | RecA protein, ATPase-domain {Mycobacterium tubercu | 90.66 | |
| d1ihua2 | 279 | Arsenite-translocating ATPase ArsA {Escherichia co | 90.42 | |
| d2jdia3 | 285 | Central domain of alpha subunit of F1 ATP synthase | 90.37 | |
| d1ihua1 | 296 | Arsenite-translocating ATPase ArsA {Escherichia co | 90.35 | |
| d2afhe1 | 289 | Nitrogenase iron protein {Azotobacter vinelandii [ | 90.26 | |
| g1qhh.1 | 623 | DEXX box DNA helicase {Bacillus stearothermophilus | 90.04 | |
| d7mdha1 | 175 | Malate dehydrogenase {Sorghum (Sorghum vulgare), c | 89.63 | |
| d1fx0a3 | 276 | Central domain of alpha subunit of F1 ATP synthase | 89.18 | |
| d2gnoa2 | 198 | gamma subunit of DNA polymerase III, N-domain {The | 88.86 | |
| d5mdha1 | 154 | Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982 | 88.75 | |
| d1eg7a_ | 549 | Formyltetrahydrofolate synthetase {Moorella thermo | 87.42 | |
| d2b8ta1 | 139 | Thymidine kinase, TK1, N-terminal domain {Ureaplas | 87.18 | |
| d1wp9a1 | 200 | putative ATP-dependent RNA helicase PF2015 {Pyroco | 86.96 | |
| d1mlda1 | 144 | Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982 | 86.04 | |
| d1yksa1 | 140 | YFV helicase domain {Yellow fever virus [TaxId: 11 | 85.9 | |
| d1guza1 | 142 | Malate dehydrogenase {Chlorobium vibrioforme [TaxI | 84.53 | |
| d1ez4a1 | 146 | Lactate dehydrogenase {Lactobacillus pentosus [Tax | 84.14 | |
| d1hyqa_ | 232 | Cell division regulator MinD {Archaeon Archaeoglob | 84.05 | |
| d2afhe1 | 289 | Nitrogenase iron protein {Azotobacter vinelandii [ | 83.59 | |
| d2p6ra3 | 202 | Hel308 helicase {Archaeoglobus fulgidus [TaxId: 22 | 83.46 | |
| d1lkxa_ | 684 | Myosin S1, motor domain {Dictyostelium discoideum, | 83.08 | |
| d1y7ta1 | 154 | Malate dehydrogenase {Thermus thermophilus [TaxId: | 82.96 | |
| d1g3qa_ | 237 | Cell division regulator MinD {Archaeon Pyrococcus | 82.86 | |
| d1d0xa2 | 712 | Myosin S1, motor domain {Dictyostelium discoideum | 81.82 | |
| d1br2a2 | 710 | Myosin S1, motor domain {Chicken (Gallus gallus), | 81.3 | |
| d2mysa2 | 794 | Myosin S1, motor domain {Chicken (Gallus gallus), | 81.11 | |
| d2eyqa3 | 233 | Transcription-repair coupling factor, TRCF {Escher | 80.02 |
| >d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ran species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=4.9e-43 Score=227.62 Aligned_cols=164 Identities=82% Similarity=1.366 Sum_probs=149.5
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccccccccccEEEEE
Q 030504 13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIM 92 (176)
Q Consensus 13 ~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 92 (176)
.+||+++|.++||||||+++|..+.+...+.||.|.++.......++..+.+.+||++|++.+..+++.++++++++++|
T Consensus 3 ~~Ki~vvG~~~vGKTsli~~~~~~~f~~~~~~Ti~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv 82 (170)
T d1i2ma_ 3 QFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIM 82 (170)
T ss_dssp EEEEEEEECTTSSHHHHHHTTC-----CCEEEETTEEEEEEEECBTTCCEEEEEEECTTHHHHSSCGGGGTTTCCEEEEE
T ss_pred eEEEEEECCCCcCHHHHHHHHHhCCCCcccccceeccccccccccccccccccccccccccccceecchhcccccchhhc
Confidence 58999999999999999999999999999999999998888888888999999999999999999999999999999999
Q ss_pred EeCCChhhhhhHHHHHHHHhhhcCCCCEEEEEeCCCCCccccCHHHHHHHHHcCCeEEEeccCCCCChHHHHHHHHHHHh
Q 030504 93 FDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLA 172 (176)
Q Consensus 93 ~d~~~~~s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l~~~i~ 172 (176)
||++++.+|+.+..|+..+.+..++.|+++|+||+|+..+....+...+++..+++|++|||++|.|++++|.+|++.+.
T Consensus 83 ~d~~~~~Sf~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~e~Sak~~~~v~e~f~~l~~~l~ 162 (170)
T d1i2ma_ 83 FDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLI 162 (170)
T ss_dssp EETTSGGGGTTHHHHHHHHHHHHCSCCEEEEEECCCCSCSCCTTTSHHHHSSCSSEEEEEBTTTTBTTTHHHHHHHHHHH
T ss_pred cccccccccchhHHHHHHHhhccCCCceeeecchhhhhhhhhhhHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHc
Confidence 99999999999999999888877899999999999998877777778889999999999999999999999999999998
Q ss_pred cCCC
Q 030504 173 GSTD 176 (176)
Q Consensus 173 ~~~~ 176 (176)
++|+
T Consensus 163 ~~~~ 166 (170)
T d1i2ma_ 163 GDPN 166 (170)
T ss_dssp TCTT
T ss_pred cCCC
Confidence 8764
|
| >d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab23 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=6.5e-41 Score=216.48 Aligned_cols=161 Identities=30% Similarity=0.618 Sum_probs=148.7
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccccccccccEEEEE
Q 030504 13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIM 92 (176)
Q Consensus 13 ~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 92 (176)
.+||+++|.+|||||||+++|..+.+...+.+|.+.+........++..+.+.+||++|++.+...+..+++.++++++|
T Consensus 2 ~iKv~liG~~~vGKSsLi~rl~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v 81 (164)
T d1z2aa1 2 AIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQACVLV 81 (164)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTCCCHHHHTTCCEEEEE
T ss_pred eEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccccceeeeeecCceeeeeeeccCCccchhhhhhhhhccCceEEEE
Confidence 58999999999999999999999999999999999888888888899999999999999999999999999999999999
Q ss_pred EeCCChhhhhhHHHHHHHHhhhcCCCCEEEEEeCCCCCccc-c-CHHHHHHHHHcCCeEEEeccCCCCChHHHHHHHHHH
Q 030504 93 FDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQ-V-KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARK 170 (176)
Q Consensus 93 ~d~~~~~s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~~~~-~-~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l~~~ 170 (176)
||++++.+++.+..|+..+.+..++.|+++|+||+|+.... . ..+...+++..+++|++|||++|.|++++|++|+++
T Consensus 82 ~d~~~~~s~~~~~~~~~~i~~~~~~~~iilVgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~~v~e~f~~l~~~ 161 (164)
T d1z2aa1 82 FSTTDRESFEAISSWREKVVAEVGDIPTALVQNKIDLLDDSCIKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVFKYLAEK 161 (164)
T ss_dssp EETTCHHHHHTHHHHHHHHHHHHCSCCEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEECBTTTTBSSHHHHHHHHHH
T ss_pred EeccchhhhhhcccccccccccCCCceEEEeeccCCcccceeeeehhhHHHHHHcCCEEEEeccCCCcCHHHHHHHHHHH
Confidence 99999999999999999998888899999999999997643 3 345678899999999999999999999999999999
Q ss_pred Hhc
Q 030504 171 LAG 173 (176)
Q Consensus 171 i~~ 173 (176)
+.|
T Consensus 162 ~lq 164 (164)
T d1z2aa1 162 HLQ 164 (164)
T ss_dssp HHC
T ss_pred HhC
Confidence 875
|
| >d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=2.8e-40 Score=215.14 Aligned_cols=167 Identities=29% Similarity=0.510 Sum_probs=148.0
Q ss_pred CCCCCeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCcccccccccccccccc
Q 030504 8 TVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQ 87 (176)
Q Consensus 8 ~~~~~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~ 87 (176)
|++.+.+||+++|.+|||||||+++|..+.+...+.++.. +.....+..++..+.+.+||++|++++...+..++++++
T Consensus 1 p~~~~~~Kv~lvG~~~vGKTsLi~r~~~~~f~~~~~~t~~-~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~ 79 (173)
T d2fn4a1 1 PPPSETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIE-DSYTKICSVDGIPARLDILDTAGQEEFGAMREQYMRAGH 79 (173)
T ss_dssp CCSSCEEEEEEEECTTSSHHHHHHHHHHSSCCSSCCTTCC-EEEEEEEEETTEEEEEEEEECCCTTTTSCCHHHHHHHCS
T ss_pred CCCCCeEEEEEECCCCcCHHHHHHHHHhCCCCcccccccc-cceeeEeccCCeeeeeeccccccccccccccchhhccce
Confidence 4566789999999999999999999999999988888764 555567778889999999999999999999999999999
Q ss_pred EEEEEEeCCChhhhhhHHHHHHHHhhh--cCCCCEEEEEeCCCCCccc--cCHHHHHHHHHcCCeEEEeccCCCCChHHH
Q 030504 88 CAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQ--VKAKQVTFHRKKNLQYYEISAKSNYNFEKP 163 (176)
Q Consensus 88 ~~i~v~d~~~~~s~~~~~~~~~~~~~~--~~~~p~liv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~ 163 (176)
++++|||++++.+++.+..|+..+.+. ..+.|+++|+||+|+.... ...+...+++..+++|++|||++|.|++++
T Consensus 80 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sak~g~gv~e~ 159 (173)
T d2fn4a1 80 GFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQRQVPRSEASAFGASHHVAYFEASAKLRLNVDEA 159 (173)
T ss_dssp EEEEEEETTCHHHHHHHHHHHHHHHHHHTSSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHH
T ss_pred eeeeecccccccccchhhhhhHHHHHHhccCCCceEEEEEeechhhccccchhhhhHHHHhcCCEEEEEeCCCCcCHHHH
Confidence 999999999999999999999888664 3688999999999997543 334577999999999999999999999999
Q ss_pred HHHHHHHHhcCC
Q 030504 164 FLYLARKLAGST 175 (176)
Q Consensus 164 ~~~l~~~i~~~~ 175 (176)
|++|++.+.+..
T Consensus 160 f~~l~~~i~k~~ 171 (173)
T d2fn4a1 160 FEQLVRAVRKYQ 171 (173)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHh
Confidence 999999887654
|
| >d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab3a species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=100.00 E-value=5.7e-40 Score=212.95 Aligned_cols=162 Identities=27% Similarity=0.564 Sum_probs=146.6
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccccccccccEEEEE
Q 030504 13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIM 92 (176)
Q Consensus 13 ~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 92 (176)
.+||+++|.+|||||||++++..+.+...+.++.+.+............+.+.+|||||++.+..++..+++++|++|+|
T Consensus 5 ~~Ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~wDt~G~e~~~~~~~~~~~~ad~~ilv 84 (169)
T d3raba_ 5 MFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGQERYRTITTAYYRGAMGFILM 84 (169)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTTTTCCEEEEE
T ss_pred EEEEEEECCCCcCHHHHHHHHHcCCCCcccccccccceeeEEEEeecceEEEEEEECCCchhhHHHHHHHHhcCCEEEEE
Confidence 48999999999999999999999999989999999898888888888899999999999999999999999999999999
Q ss_pred EeCCChhhhhhHHHHHHHHhhhc-CCCCEEEEEeCCCCCcccc--CHHHHHHHHHcCCeEEEeccCCCCChHHHHHHHHH
Q 030504 93 FDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNRQV--KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLAR 169 (176)
Q Consensus 93 ~d~~~~~s~~~~~~~~~~~~~~~-~~~p~liv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l~~ 169 (176)
||++++.++..+..|+....... +..|+++++||+|+..... .++...+++..++++++|||++|.|++++|++|++
T Consensus 85 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~gv~e~f~~l~~ 164 (169)
T d3raba_ 85 YDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLVD 164 (169)
T ss_dssp EETTCHHHHHTHHHHHHHHHHHCCSCCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHHHHH
T ss_pred EECccchhhhhhhhhhhhhhcccCCcceEEEEEeecccccccccchhhhHHHHHHcCCEEEEecCCCCcCHHHHHHHHHH
Confidence 99999999999998887766553 6789999999999986543 34566889999999999999999999999999999
Q ss_pred HHhcC
Q 030504 170 KLAGS 174 (176)
Q Consensus 170 ~i~~~ 174 (176)
.+.++
T Consensus 165 ~i~ek 169 (169)
T d3raba_ 165 VICEK 169 (169)
T ss_dssp HHHTC
T ss_pred HHhhC
Confidence 99875
|
| >d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein M-Ras (XRas) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=1.1e-39 Score=211.48 Aligned_cols=164 Identities=32% Similarity=0.523 Sum_probs=145.5
Q ss_pred CCCeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccccccccccEE
Q 030504 10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCA 89 (176)
Q Consensus 10 ~~~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~ 89 (176)
+.|.+||+++|.++||||||+++|..+.+.+.+.++.+..+ ......++..+.+.+||++|++.+...++.+++++|++
T Consensus 1 ~~pt~Ki~lvG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~ 79 (169)
T d1x1ra1 1 NLPTYKLVVVGDGGVGKSALTIQFFQKIFVPDYDPTIEDSY-LKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTGDGF 79 (169)
T ss_dssp CCCEEEEEEECCTTSSHHHHHHHHHHSSCCTTCCTTCCEEE-EEEEEETTEEEEEEEEECCSCGGGCSSHHHHHHHCSEE
T ss_pred CCCcEEEEEECCCCcCHHHHHHHHHhCCCCcccCcceeecc-ccccccccccccccccccccccccccchhhhhhhccEE
Confidence 35789999999999999999999999999988888887544 44566788899999999999999999999999999999
Q ss_pred EEEEeCCChhhhhhHHHHHHHHhhhc--CCCCEEEEEeCCCCCccc-c-CHHHHHHHHHcCCeEEEeccCCCC-ChHHHH
Q 030504 90 IIMFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNRQ-V-KAKQVTFHRKKNLQYYEISAKSNY-NFEKPF 164 (176)
Q Consensus 90 i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~liv~nK~Dl~~~~-~-~~~~~~~~~~~~~~~~~~S~~~~~-~v~~~~ 164 (176)
++|||++++.+|+.+..|+..+.+.. .+.|+++++||+|+.... + .++..+++++++++|++|||+++. ||+++|
T Consensus 80 llv~d~~d~~Sf~~~~~~~~~i~~~~~~~~~p~ilvgnK~Dl~~~~~v~~e~~~~~~~~~~~~~~e~Sak~~~~nV~~~F 159 (169)
T d1x1ra1 80 LIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTF 159 (169)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHHTSSCCCEEEEEECTTCSTTCCSCHHHHHHHHHHHTCCEEEEBCSSSCBSHHHHH
T ss_pred EEecccccchhhhccchhhHHHHhhccccCccEEEEecccchhhhceeehhhHHHHHHHcCCEEEEEcCCCCCcCHHHHH
Confidence 99999999999999999999887653 578999999999997643 3 346779999999999999999886 999999
Q ss_pred HHHHHHHhcC
Q 030504 165 LYLARKLAGS 174 (176)
Q Consensus 165 ~~l~~~i~~~ 174 (176)
.+|++.+.++
T Consensus 160 ~~l~~~i~~~ 169 (169)
T d1x1ra1 160 HDLVRVIRQQ 169 (169)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHHhC
Confidence 9999998864
|
| >d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab21 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1.1e-39 Score=211.17 Aligned_cols=161 Identities=29% Similarity=0.538 Sum_probs=140.2
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccccccccccEEEEE
Q 030504 13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIM 92 (176)
Q Consensus 13 ~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 92 (176)
.+||+++|.+|||||||+++|..+.+.+.+.++.+.+........++..+.+.+||++|++.+..++..+++++|++++|
T Consensus 3 ~fKivlvG~~~vGKTsLi~r~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v 82 (167)
T d1z08a1 3 SFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGAILV 82 (167)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC-------CCSSTTCSEEEEE
T ss_pred eEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccchheeeeccCCccceeeeeccCCcceecccchhhccCCceeEEE
Confidence 48999999999999999999999999999999999888888888888999999999999999999999999999999999
Q ss_pred EeCCChhhhhhHHHHHHHHhhhc-CCCCEEEEEeCCCCCccc--cCHHHHHHHHHcCCeEEEeccCCCCChHHHHHHHHH
Q 030504 93 FDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNRQ--VKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLAR 169 (176)
Q Consensus 93 ~d~~~~~s~~~~~~~~~~~~~~~-~~~p~liv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l~~ 169 (176)
||++++.+|+.+..|+..+.... ...|+++|+||+|+.... ...+...++++++++|++|||++|.||+++|.+|++
T Consensus 83 ~d~~~~~Sf~~~~~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~e~~~~a~~~~~~~~e~Sak~~~~v~e~F~~l~~ 162 (167)
T d1z08a1 83 YDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLEKERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDLCK 162 (167)
T ss_dssp EETTCHHHHHHHHHHHHHHHHHHGGGSEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEEBTTTTBSHHHHHHHHHH
T ss_pred EeCCchhHHHhhhhhhhhcccccccccceeeeccccccccccccchHHHHHHHHHcCCeEEEEecCCCcCHHHHHHHHHH
Confidence 99999999999999988776543 578899999999997643 244567899999999999999999999999999999
Q ss_pred HHhc
Q 030504 170 KLAG 173 (176)
Q Consensus 170 ~i~~ 173 (176)
++.+
T Consensus 163 ~i~~ 166 (167)
T d1z08a1 163 RMIE 166 (167)
T ss_dssp HHHC
T ss_pred HHhh
Confidence 9875
|
| >d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein RalA species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]
Probab=100.00 E-value=1.3e-39 Score=211.06 Aligned_cols=163 Identities=29% Similarity=0.522 Sum_probs=142.6
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccccccccccEEE
Q 030504 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (176)
Q Consensus 11 ~~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 90 (176)
.+.+||+++|.++||||||+++|..+.+...+.||.+.++. .....++..+.+.+||++|++.+..++..+++++|+++
T Consensus 2 ~~~~KivlvG~~~vGKTsli~~~~~~~f~~~~~~T~~~~~~-~~~~~~~~~~~l~i~d~~g~~~~~~~~~~~~~~~~~~i 80 (168)
T d1u8za_ 2 LALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYR-KKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFL 80 (168)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEEE-EEEEETTEEEEEEEEECCC---CHHHHHHHHHHCSEEE
T ss_pred CceeEEEEECCCCcCHHHHHHHHHhCCCCcccCCccccccc-cccccccccccccccccccccchhhhhhhcccccceeE
Confidence 46799999999999999999999999999999999886653 45667888999999999999999999999999999999
Q ss_pred EEEeCCChhhhhhHHHHHHHHhhhc--CCCCEEEEEeCCCCCccc-c-CHHHHHHHHHcCCeEEEeccCCCCChHHHHHH
Q 030504 91 IMFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNRQ-V-KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLY 166 (176)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~liv~nK~Dl~~~~-~-~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~ 166 (176)
+|||++++.+++.+..|+..+.+.. ++.|+++|+||+|+.... + .++...+++..+++|++|||++|.|++++|.+
T Consensus 81 lv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piiivgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~gv~e~f~~ 160 (168)
T d1u8za_ 81 CVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRADQWNVNYVETSAKTRANVDKVFFD 160 (168)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHHCCTTSCEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEECCTTTCTTHHHHHHH
T ss_pred EEeeccchhhhhhHHHHHHHHHHhhCCCCCcEEEEeccccccccccccHHHHHHHHHHcCCeEEEEcCCCCcCHHHHHHH
Confidence 9999999999999999998887653 688999999999997643 2 34567899999999999999999999999999
Q ss_pred HHHHHhcC
Q 030504 167 LARKLAGS 174 (176)
Q Consensus 167 l~~~i~~~ 174 (176)
|++++..|
T Consensus 161 l~~~i~~r 168 (168)
T d1u8za_ 161 LMREIRAR 168 (168)
T ss_dssp HHHHHHTC
T ss_pred HHHHHHCc
Confidence 99998754
|
| >d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab30 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=2.2e-39 Score=210.60 Aligned_cols=161 Identities=35% Similarity=0.629 Sum_probs=146.0
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccccccccccEEEEE
Q 030504 13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIM 92 (176)
Q Consensus 13 ~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 92 (176)
.+||+++|.+|||||||+++|..+.+...+.++.+.++....+..++..+.+.+|||+|++.+..++..++++++++++|
T Consensus 5 ~~Ki~lvG~~~vGKTsLi~~l~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~~~~~i~v 84 (171)
T d2ew1a1 5 LFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSANALILT 84 (171)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHGGGSTTCSEEEEE
T ss_pred EEEEEEECCCCcCHHHHHHHHHhCCCCCcccccccceEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhccceEEEe
Confidence 48999999999999999999999999988889998888888888999999999999999999999999999999999999
Q ss_pred EeCCChhhhhhHHHHHHHHhhhc-CCCCEEEEEeCCCCCccc-c-CHHHHHHHHHcCCeEEEeccCCCCChHHHHHHHHH
Q 030504 93 FDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNRQ-V-KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLAR 169 (176)
Q Consensus 93 ~d~~~~~s~~~~~~~~~~~~~~~-~~~p~liv~nK~Dl~~~~-~-~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l~~ 169 (176)
+|++++.+++.+..|+..+.+.. ...|+++|+||+|+.... . ..+...+++..++++++|||++|.||+++|.+|++
T Consensus 85 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ilvgnK~D~~~~~~v~~~~~~~~~~~~~~~~~~~SAktg~gV~e~f~~l~~ 164 (171)
T d2ew1a1 85 YDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLAERREVSQQRAEEFSEAQDMYYLETSAKESDNVEKLFLDLAC 164 (171)
T ss_dssp EETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCSSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHHHHH
T ss_pred eecccchhhhhhhhhhhhhcccccccccEEEEEeecccccccchhhhHHHHHHHhCCCEEEEEccCCCCCHHHHHHHHHH
Confidence 99999999999999988876654 578999999999987643 3 34567899999999999999999999999999998
Q ss_pred HHhc
Q 030504 170 KLAG 173 (176)
Q Consensus 170 ~i~~ 173 (176)
++.+
T Consensus 165 ~l~~ 168 (171)
T d2ew1a1 165 RLIS 168 (171)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8764
|
| >d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab6 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=2.1e-39 Score=209.36 Aligned_cols=160 Identities=30% Similarity=0.574 Sum_probs=145.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccccccccccEEEEEE
Q 030504 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMF 93 (176)
Q Consensus 14 ~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 93 (176)
|||+++|.+|||||||+++|..+++...+.++.+..........++..+.+.+||++|++.+...+..++..++++++||
T Consensus 1 fKv~vvG~~~vGKTsLi~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~ilv~ 80 (164)
T d1yzqa1 1 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGQERFRSLIPSYIRDSAAAVVVY 80 (164)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEECSSCEEEEEEEEECCSGGGGGGHHHHHTTCSEEEEEE
T ss_pred CEEEEECCCCcCHHHHHHHHHhCCCCCccccceeeeccceeeccCCCceeeeecccCCcchhccchHHHhhccceEEEee
Confidence 69999999999999999999999999999999988888888888889999999999999999999999999999999999
Q ss_pred eCCChhhhhhHHHHHHHHhhhc-CCCCEEEEEeCCCCCccc--cCHHHHHHHHHcCCeEEEeccCCCCChHHHHHHHHHH
Q 030504 94 DVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNRQ--VKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARK 170 (176)
Q Consensus 94 d~~~~~s~~~~~~~~~~~~~~~-~~~p~liv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l~~~ 170 (176)
|++++.+++.+..|+..+.... ++.|+++|+||+|+.... ..++...+++..+++|++|||++|.||+++|++|+++
T Consensus 81 d~~~~~s~~~i~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~SAk~g~~v~e~f~~i~~~ 160 (164)
T d1yzqa1 81 DITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAA 160 (164)
T ss_dssp ETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHHHH
T ss_pred ccccccchhhhHhhHHHHHHhcCCCceEEEEecccchhhhhhhhHHHHHHHHHHcCCEEEEecCCCCcCHHHHHHHHHHh
Confidence 9999999999999998877654 689999999999997533 2346778999999999999999999999999999998
Q ss_pred Hhc
Q 030504 171 LAG 173 (176)
Q Consensus 171 i~~ 173 (176)
+..
T Consensus 161 l~g 163 (164)
T d1yzqa1 161 LPG 163 (164)
T ss_dssp SCC
T ss_pred hCC
Confidence 763
|
| >d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab14 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=4.1e-39 Score=208.35 Aligned_cols=160 Identities=33% Similarity=0.551 Sum_probs=145.3
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccccccccccEEEEE
Q 030504 13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIM 92 (176)
Q Consensus 13 ~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 92 (176)
.+||+++|.++||||||+++++.+++...+.++.+.+........++..+.+.+||++|++.+...+..+++++|++++|
T Consensus 4 ~~KivlvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~d~~ilv 83 (166)
T d1z0fa1 4 IFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMV 83 (166)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGGTCHHHHHHHHTCSEEEEE
T ss_pred EEEEEEECCCCcCHHHHHHHHHhCCCCCcccccccccceeEEEEECCEEEEEEEeccCCchhHHHHHHHHhcCCcEEEEE
Confidence 37999999999999999999999999998888888888888888899999999999999999999999999999999999
Q ss_pred EeCCChhhhhhHHHHHHHHhhhc-CCCCEEEEEeCCCCCccccC--HHHHHHHHHcCCeEEEeccCCCCChHHHHHHHHH
Q 030504 93 FDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNRQVK--AKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLAR 169 (176)
Q Consensus 93 ~d~~~~~s~~~~~~~~~~~~~~~-~~~p~liv~nK~Dl~~~~~~--~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l~~ 169 (176)
||+++..+++.+..|+..+.+.. +..|+++++||+|+...... ++...+++..++++++|||++|.||+++|.+|++
T Consensus 84 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Saktg~~v~e~f~~i~~ 163 (166)
T d1z0fa1 84 YDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAAK 163 (166)
T ss_dssp EETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHHH
T ss_pred eccCchHHHHHHHHHHHHHHhhccccceEEEEcccccchhhcccHHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHH
Confidence 99999999999999988887654 58899999999999754432 4567899999999999999999999999999999
Q ss_pred HHh
Q 030504 170 KLA 172 (176)
Q Consensus 170 ~i~ 172 (176)
++.
T Consensus 164 ~i~ 166 (166)
T d1z0fa1 164 KIY 166 (166)
T ss_dssp HHC
T ss_pred HhC
Confidence 874
|
| >d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-22a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=3.9e-39 Score=208.63 Aligned_cols=162 Identities=27% Similarity=0.518 Sum_probs=147.0
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccccccccccEEE
Q 030504 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (176)
Q Consensus 11 ~~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 90 (176)
++++||+++|.++||||||+++|..+.+.+.+.++.+................+.+||++|++.+..++..+++.+++++
T Consensus 2 ~k~~Ki~lvG~~~vGKTsli~rl~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i 81 (167)
T d1z0ja1 2 LRELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRALAPMYYRGSAAAI 81 (167)
T ss_dssp EEEEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGTHHHHTTCSEEE
T ss_pred CceeEEEEECCCCcCHHHHHHHHHhCCCCcccccccccccccccccccccccceeeeecCCchhhhHHHHHHHhhccceE
Confidence 46899999999999999999999999999999999998888888888888899999999999999999999999999999
Q ss_pred EEEeCCChhhhhhHHHHHHHHhhhc-CCCCEEEEEeCCCCCccc--cCHHHHHHHHHcCCeEEEeccCCCCChHHHHHHH
Q 030504 91 IMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNRQ--VKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYL 167 (176)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~liv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l 167 (176)
+|||++++.+++.+..|+..+.... ++.|+++|+||+|+.... ...+...+++..+++|++|||++|.||+++|.+|
T Consensus 82 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SAk~~~nV~e~f~~l 161 (167)
T d1z0ja1 82 IVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTDVREVMERDAKDYADSIHAIFVETSAKNAININELFIEI 161 (167)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHSCTTSEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHHH
T ss_pred EEeeechhhhhhhHHHhhhhhhhccCCcceEEEecccchhccccchhHHHHHHHHHHcCCEEEEEecCCCCCHHHHHHHH
Confidence 9999999999999999887776654 688999999999997542 3345678999999999999999999999999999
Q ss_pred HHHHh
Q 030504 168 ARKLA 172 (176)
Q Consensus 168 ~~~i~ 172 (176)
+++|.
T Consensus 162 ~~~i~ 166 (167)
T d1z0ja1 162 SRRIP 166 (167)
T ss_dssp HHHCC
T ss_pred HHhCC
Confidence 99873
|
| >d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein RheB species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=5.5e-39 Score=207.95 Aligned_cols=161 Identities=25% Similarity=0.348 Sum_probs=143.6
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccccccccccEEE
Q 030504 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (176)
Q Consensus 11 ~~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 90 (176)
.+.+||+++|.+|||||||+++|..+.+...+.||.+.++ ......++..+.+.+||++|.+.+..++..++.++|+++
T Consensus 2 ~k~~Kv~liG~~~vGKTsLl~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~d~~g~~~~~~~~~~~~~~~d~~i 80 (167)
T d1xtqa1 2 SKSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTF-TKLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDINGYI 80 (167)
T ss_dssp CEEEEEEEEESTTSSHHHHHHHHHHSCCCSCCCSSCCEEE-EEEEEETTEEEEEEEEECCCCCTTCCCCGGGTSSCCEEE
T ss_pred CcceEEEEECCCCcCHHHHHHHHHhCCCCcccCcceeccc-ceEEecCcEEEEeeecccccccccccccchhhhhhhhhh
Confidence 3578999999999999999999999999988899988665 355677889999999999999999999999999999999
Q ss_pred EEEeCCChhhhhhHHHHHHHHhhhc--CCCCEEEEEeCCCCCccc-c-CHHHHHHHHHcCCeEEEeccCCCCChHHHHHH
Q 030504 91 IMFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNRQ-V-KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLY 166 (176)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~liv~nK~Dl~~~~-~-~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~ 166 (176)
+|||++++.+++.+..|+..+.+.. ++.|+++|+||+|+.... + .++...++++++++|++|||++|.|++++|+.
T Consensus 81 lv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~r~v~~~~~~~~a~~~~~~~~e~Sak~~~~v~~~f~~ 160 (167)
T d1xtqa1 81 LVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHMERVISYEEGKALAESWNAAFLESSAKENQTAVDVFRR 160 (167)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHHCSSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECCTTCHHHHHHHHHH
T ss_pred hhcccchhhhhhhhhhhhhhhhhcccccccceeeeccccccccccchhHHHHHHHHHHcCCEEEEEecCCCCCHHHHHHH
Confidence 9999999999999999998887653 578999999999997643 3 34567899999999999999999999999999
Q ss_pred HHHHHh
Q 030504 167 LARKLA 172 (176)
Q Consensus 167 l~~~i~ 172 (176)
|++.+.
T Consensus 161 li~~~~ 166 (167)
T d1xtqa1 161 IILEAE 166 (167)
T ss_dssp HHHHHH
T ss_pred HHHHhc
Confidence 998875
|
| >d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoQ species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=8.3e-39 Score=210.21 Aligned_cols=164 Identities=24% Similarity=0.361 Sum_probs=140.8
Q ss_pred CCCCeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccccccccccE
Q 030504 9 VDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQC 88 (176)
Q Consensus 9 ~~~~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~ 88 (176)
+....+||+++|.+|||||||+++|..+.+.+.+.+|.+ +.........+..+.+.+||++|++.+...+..+++++|+
T Consensus 5 ~~~~~~Ki~lvG~~~vGKTsLi~r~~~~~f~~~~~~Ti~-~~~~~~~~~~~~~~~l~i~D~~g~e~~~~~~~~~~~~a~~ 83 (185)
T d2atxa1 5 PGALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVF-DHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDV 83 (185)
T ss_dssp CEEEEEEEEEEECTTSSHHHHHHHHHHSSCCCSCCCSSC-CCEEEEEESSSCEEEEEEECCCCSSSSTTTGGGGCTTCSE
T ss_pred CCCcEEEEEEECCCCCCHHHHHHHHhhCCCCCcCCCcee-eeeeEEEeeCCceEEeecccccccchhhhhhhhcccccce
Confidence 466789999999999999999999999999998889887 3445556677888999999999999999999999999999
Q ss_pred EEEEEeCCChhhhhhHHH-HHHHHhhhcCCCCEEEEEeCCCCCcc-------------c-cCHHHHHHHHHcC-CeEEEe
Q 030504 89 AIIMFDVTARLTYKNVPT-WHRDLCRVCENIPIVLCGNKVDVKNR-------------Q-VKAKQVTFHRKKN-LQYYEI 152 (176)
Q Consensus 89 ~i~v~d~~~~~s~~~~~~-~~~~~~~~~~~~p~liv~nK~Dl~~~-------------~-~~~~~~~~~~~~~-~~~~~~ 152 (176)
+++|||++++.+|+++.. |...+....++.|+++|+||+|+.+. . ..++..+++++.+ +.|+||
T Consensus 84 ~ilv~d~t~~~Sf~~~~~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~~~~~~~~~~~r~v~~~~~~~~a~~~~~~~~~E~ 163 (185)
T d2atxa1 84 FLICFSVVNPASFQNVKEEWVPELKEYAPNVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVEC 163 (185)
T ss_dssp EEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECTTSTTCHHHHHHHTTTTCCCCCHHHHHHHHHHHTCSCEEEC
T ss_pred eeeccccchHHHHHHHHHHHHHHHHhcCCCCCeeEeeeccccccchhhhhhhhhcccccccHHHHHHHHHHcCCCEEEEe
Confidence 999999999999988764 55555556679999999999998651 1 2334567888877 799999
Q ss_pred ccCCCCChHHHHHHHHHHHhc
Q 030504 153 SAKSNYNFEKPFLYLARKLAG 173 (176)
Q Consensus 153 S~~~~~~v~~~~~~l~~~i~~ 173 (176)
||++|.||+++|+.+++++..
T Consensus 164 SAk~~~gv~e~F~~li~~il~ 184 (185)
T d2atxa1 164 SALTQKGLKTVFDEAIIAILT 184 (185)
T ss_dssp CTTTCTTHHHHHHHHHHHHHC
T ss_pred cCCCCcCHHHHHHHHHHHHcC
Confidence 999999999999999998864
|
| >d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: cH-p21 Ras protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1.2e-38 Score=206.17 Aligned_cols=162 Identities=28% Similarity=0.537 Sum_probs=144.8
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccccccccccEEE
Q 030504 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (176)
Q Consensus 11 ~~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 90 (176)
++++||+++|+++||||||+++|..+.+...+.++.+..+... ....+..+.+.+||++|++.+...+..+++.+++++
T Consensus 1 m~e~Ki~viG~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~i 79 (166)
T d1ctqa_ 1 MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQ-VVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFL 79 (166)
T ss_dssp CEEEEEEEEESTTSSHHHHHHHHHHCCCCCSCCCCSEEEEEEE-EEETTEEEEEEEEEECCCGGGHHHHHHHHHHCSEEE
T ss_pred CCeeEEEEECCCCCCHHHHHHHHHhCCCCCccCCccceeeccc-eeeeceeeeeeeeeccCccccccchhhhhhcccccc
Confidence 4679999999999999999999999999998899988665544 456778899999999999999999999999999999
Q ss_pred EEEeCCChhhhhhHHHHHHHHhhhc--CCCCEEEEEeCCCCCccccCH-HHHHHHHHcCCeEEEeccCCCCChHHHHHHH
Q 030504 91 IMFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNRQVKA-KQVTFHRKKNLQYYEISAKSNYNFEKPFLYL 167 (176)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~liv~nK~Dl~~~~~~~-~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l 167 (176)
+|||++++.+++.+..|+..+.+.. ++.|+++|+||+|+..+.... +...+++..+++|++|||++|.|++++|.+|
T Consensus 80 iv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~e~Sak~g~gi~e~f~~i 159 (166)
T d1ctqa_ 80 CVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTL 159 (166)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHHTCSSCCEEEEEECTTCSCCCSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHHH
T ss_pred eeecccccccHHHHHHHHHHHHHhcCCCCCeEEEEecccccccccccHHHHHHHHHHhCCeEEEEcCCCCcCHHHHHHHH
Confidence 9999999999999999999887653 578999999999998765544 4668899999999999999999999999999
Q ss_pred HHHHhc
Q 030504 168 ARKLAG 173 (176)
Q Consensus 168 ~~~i~~ 173 (176)
++++.+
T Consensus 160 ~~~i~~ 165 (166)
T d1ctqa_ 160 VREIRQ 165 (166)
T ss_dssp HHHHHT
T ss_pred HHHHHh
Confidence 999875
|
| >d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: di-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=4.2e-39 Score=209.29 Aligned_cols=163 Identities=25% Similarity=0.421 Sum_probs=141.9
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccccccccccEEEE
Q 030504 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAII 91 (176)
Q Consensus 12 ~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~ 91 (176)
+.|||+++|.+|||||||+++|+.+.+.+.+.+|.+..+ ......++..+.+.+||++|++.+...+..+++.+|++++
T Consensus 1 n~~Ki~viG~~~vGKTsLi~r~~~~~f~~~~~~T~~~~~-~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~a~~~il 79 (171)
T d2erxa1 1 NDYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTY-RQVISCDKSICTLQITDTTGSHQFPAMQRLSISKGHAFIL 79 (171)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEEE-EEEEEETTEEEEEEEEECCSCSSCHHHHHHHHHHCSEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhCCCCCccCcceeecc-ccceeeccccceeccccccccccccccccccccceeEEEE
Confidence 469999999999999999999999999988899988544 4455678888999999999999999999999999999999
Q ss_pred EEeCCChhhhhhHHHHHHHHhhh---cCCCCEEEEEeCCCCCcc-cc-CHHHHHHHHHcCCeEEEeccCCCCChHHHHHH
Q 030504 92 MFDVTARLTYKNVPTWHRDLCRV---CENIPIVLCGNKVDVKNR-QV-KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLY 166 (176)
Q Consensus 92 v~d~~~~~s~~~~~~~~~~~~~~---~~~~p~liv~nK~Dl~~~-~~-~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~ 166 (176)
|||++++.+++.+..|+..+.+. .++.|+++|+||+|+... .+ ..+...+++.++++|++|||++|.||+++|..
T Consensus 80 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~v~~~e~~~~~~~~~~~~~e~Sak~~~~v~e~f~~ 159 (171)
T d2erxa1 80 VYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPSREVQSSEAEALARTWKCAFMETSAKLNHNVKELFQE 159 (171)
T ss_dssp EEETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHH
T ss_pred EeecccccchhcccchhhhhhhhhccCCCCcEEEEeecccccccccccHHHHHHHHHHcCCeEEEEcCCCCcCHHHHHHH
Confidence 99999999999999988777553 357899999999999753 33 34567899999999999999999999999999
Q ss_pred HHHHHhcCC
Q 030504 167 LARKLAGST 175 (176)
Q Consensus 167 l~~~i~~~~ 175 (176)
|++.+.++.
T Consensus 160 l~~~~~~~~ 168 (171)
T d2erxa1 160 LLNLEKRRT 168 (171)
T ss_dssp HHHTCCSSC
T ss_pred HHHHHHHhh
Confidence 999877653
|
| >d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1.1e-38 Score=207.28 Aligned_cols=163 Identities=29% Similarity=0.545 Sum_probs=141.0
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccccccccccEEEE
Q 030504 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAII 91 (176)
Q Consensus 12 ~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~ 91 (176)
+.+||+++|.+|||||||+++|..+.+...+.++.+ +........++..+.+.+||++|.+.+......+++.+|++++
T Consensus 4 ~~~Ki~lvG~~~vGKTsLi~r~~~~~f~~~~~~t~~-~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~il 82 (171)
T d2erya1 4 EKYRLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIE-DSYTKQCVIDDRAARLDILDTAGQEEFGAMREQYMRTGEGFLL 82 (171)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHHSCCCSSCCTTCC-EEEEEEEEETTEEEEEEEEECC----CCHHHHHHHHHCSEEEE
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCCCCcccCcccc-cceeeeeeecccccccccccccccccccccccccccccceEEE
Confidence 569999999999999999999999999988888887 4555667788899999999999999999999999999999999
Q ss_pred EEeCCChhhhhhHHHHHHHHhhhc--CCCCEEEEEeCCCCCcc--ccCHHHHHHHHHcCCeEEEeccCCCCChHHHHHHH
Q 030504 92 MFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNR--QVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYL 167 (176)
Q Consensus 92 v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~liv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l 167 (176)
|||++++.+++.+..|+..+.+.. ...|+++|+||+|+... ....+..++++..+++|++|||++|.|++++|.+|
T Consensus 83 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~~~~i~e~f~~l 162 (171)
T d2erya1 83 VFSVTDRGSFEEIYKFQRQILRVKDRDEFPMILIGNKADLDHQRQVTQEEGQQLARQLKVTYMEASAKIRMNVDQAFHEL 162 (171)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHHTSSCCSEEEEEECTTCTTSCSSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHHH
T ss_pred eeccccccchhhHHHHhHHHHhhcccCCCCEEEEEeccchhhhccchHHHHHHHHHHcCCEEEEEcCCCCcCHHHHHHHH
Confidence 999999999999999988776553 57899999999999754 23445779999999999999999999999999999
Q ss_pred HHHHhcCC
Q 030504 168 ARKLAGST 175 (176)
Q Consensus 168 ~~~i~~~~ 175 (176)
++.+.+..
T Consensus 163 ~~~i~k~~ 170 (171)
T d2erya1 163 VRVIRKFQ 170 (171)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHhh
Confidence 99987654
|
| >d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab18 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1.5e-38 Score=207.65 Aligned_cols=166 Identities=32% Similarity=0.576 Sum_probs=150.9
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccccccccccEEE
Q 030504 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (176)
Q Consensus 11 ~~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 90 (176)
.+.+||+++|.+|||||||++++..+++...+.++.+.......+..++..+.+.+|||+|++.+..++..++.++|+++
T Consensus 5 ~~~iKi~vvG~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ii 84 (177)
T d1x3sa1 5 LTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRGAQGVI 84 (177)
T ss_dssp EEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCCSHHHHHTTCCEEE
T ss_pred cceeEEEEECCCCcCHHHHHHHHHhCCCCCccccceeecceeEEEEEeccccEEEEEECCCchhhHHHHHHHHhcCCEEE
Confidence 57899999999999999999999999999888888888888888888889999999999999999999999999999999
Q ss_pred EEEeCCChhhhhhHHHHHHHHhhhc--CCCCEEEEEeCCCCCccccCH-HHHHHHHHcCCeEEEeccCCCCChHHHHHHH
Q 030504 91 IMFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNRQVKA-KQVTFHRKKNLQYYEISAKSNYNFEKPFLYL 167 (176)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~liv~nK~Dl~~~~~~~-~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l 167 (176)
+|||++++.+++.+..|+..+.+.. ...|+++++||.|...+.... +...+++..++++++|||++|.|++++|+++
T Consensus 85 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~i~~~~nk~d~~~~~v~~~~~~~~~~~~~~~~~e~Sa~tg~gv~e~f~~l 164 (177)
T d1x3sa1 85 LVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKENREVDRNEGLKFARKHSMLFIEASAKTCDGVQCAFEEL 164 (177)
T ss_dssp EEEETTCHHHHHTHHHHHHHHTTCCSCSCCEEEEEEECTTSSSCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHH
T ss_pred EEEECCCccccccchhhhhhhcccccccceeeEEEeeccccccccccHHHHHHHHHHCCCEEEEEeCCCCCCHHHHHHHH
Confidence 9999999999999999998887654 468899999999987655544 5678899999999999999999999999999
Q ss_pred HHHHhcCCC
Q 030504 168 ARKLAGSTD 176 (176)
Q Consensus 168 ~~~i~~~~~ 176 (176)
++++.++|+
T Consensus 165 ~~~l~~~p~ 173 (177)
T d1x3sa1 165 VEKIIQTPG 173 (177)
T ss_dssp HHHHHTSGG
T ss_pred HHHHccCcc
Confidence 999998874
|
| >d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab4a species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1.5e-38 Score=207.23 Aligned_cols=162 Identities=31% Similarity=0.582 Sum_probs=145.9
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccccccccccEEEEE
Q 030504 13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIM 92 (176)
Q Consensus 13 ~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 92 (176)
.+||+++|.+|||||||+++|..+++.+.+.++.+.+........+...+.+.+||++|++++..+++.+++.++++++|
T Consensus 5 ~~KI~lvG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v 84 (174)
T d2bmea1 5 LFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAGALLV 84 (174)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTSTTCSEEEEE
T ss_pred EEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccceeeEEEEecCcceeEEEEECCCchhhhhhHHHHhhhCCEEEEE
Confidence 38999999999999999999999999999999998888888888888899999999999999999999999999999999
Q ss_pred EeCCChhhhhhHHHHHHHHhhhc-CCCCEEEEEeCCCCCccccC--HHHHHHHHHcCCeEEEeccCCCCChHHHHHHHHH
Q 030504 93 FDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNRQVK--AKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLAR 169 (176)
Q Consensus 93 ~d~~~~~s~~~~~~~~~~~~~~~-~~~p~liv~nK~Dl~~~~~~--~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l~~ 169 (176)
||.+++.+++.+..|+..+.... ++.|+++|+||+|+...... .....+++..++++++|||++|.|++++|.++++
T Consensus 85 ~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~e~Sak~~~gi~e~f~~l~~ 164 (174)
T d2bmea1 85 YDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDADREVTFLEASRFAQENELMFLETSALTGENVEEAFVQCAR 164 (174)
T ss_dssp EETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHHH
T ss_pred EecccchhHHHHhhhhcccccccCCceEEEEEEecccccchhchhhhHHHHHHHhCCCEEEEeeCCCCcCHHHHHHHHHH
Confidence 99999999999999888876654 68999999999998754333 3456888899999999999999999999999999
Q ss_pred HHhcC
Q 030504 170 KLAGS 174 (176)
Q Consensus 170 ~i~~~ 174 (176)
++.++
T Consensus 165 ~i~~~ 169 (174)
T d2bmea1 165 KILNK 169 (174)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 87654
|
| >d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab5a species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1.1e-38 Score=207.16 Aligned_cols=164 Identities=33% Similarity=0.595 Sum_probs=148.0
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccccccccccEEE
Q 030504 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (176)
Q Consensus 11 ~~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 90 (176)
...+||+++|.+|||||||+++|..+.+.+.+.++.+.+............+.+.+||++|++.+...+..+++++++++
T Consensus 4 ~~~~Ki~vvG~~~vGKTsLi~~l~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i 83 (170)
T d1r2qa_ 4 ICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAI 83 (170)
T ss_dssp EEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEE
T ss_pred eeEEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccccccceeeccceEEEEEeccCCCchhhhhhHHHHhhCcceEE
Confidence 35799999999999999999999999999999999998888888888888999999999999999999999999999999
Q ss_pred EEEeCCChhhhhhHHHHHHHHhhhc-CCCCEEEEEeCCCCCccc-cC-HHHHHHHHHcCCeEEEeccCCCCChHHHHHHH
Q 030504 91 IMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNRQ-VK-AKQVTFHRKKNLQYYEISAKSNYNFEKPFLYL 167 (176)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~liv~nK~Dl~~~~-~~-~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l 167 (176)
+|||.+++.+++.+..|...+.+.. ++.|+++|+||+|+..+. +. ++..++++..+++|++|||++|.||+++|.+|
T Consensus 84 lv~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~v~~e~~~~~~~~~~~~~~e~SAk~g~~V~e~f~~l 163 (170)
T d1r2qa_ 84 VVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAI 163 (170)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHH
T ss_pred EEeccchhhHHHHHHHHhhhhhhccCCCceEEeecccccccccccccHHHHHHHHHhcCCEEEEeeCCCCCCHHHHHHHH
Confidence 9999999999999999888876553 689999999999997643 33 34668889999999999999999999999999
Q ss_pred HHHHhcC
Q 030504 168 ARKLAGS 174 (176)
Q Consensus 168 ~~~i~~~ 174 (176)
++.+.++
T Consensus 164 ~~~i~~n 170 (170)
T d1r2qa_ 164 AKKLPKN 170 (170)
T ss_dssp HHTSCCC
T ss_pred HHHHhhC
Confidence 9988764
|
| >d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap1A species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1.5e-38 Score=205.93 Aligned_cols=161 Identities=32% Similarity=0.565 Sum_probs=141.5
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccccccccccEEE
Q 030504 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (176)
Q Consensus 11 ~~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 90 (176)
++.+||+++|.+|||||||+++|..+.+.+.+.++.+... ......+...+.+.+||++|++.+...+..+++++|+++
T Consensus 1 mr~~KivvvG~~~vGKTsli~r~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i 79 (167)
T d1c1ya_ 1 MREYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSY-RKQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFA 79 (167)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHCCCCCSCCCCSEEEE-EEEEESSSCEEEEEEEEECSSCSSTTHHHHHHHHCSEEE
T ss_pred CceeEEEEECCCCCCHHHHHHHHHcCCCCCccCCcccccc-ceeEEeeeeEEEeccccccCcccccccccccccccceeE
Confidence 4689999999999999999999999999999999988554 445567888999999999999999999999999999999
Q ss_pred EEEeCCChhhhhhHHHHHHHHhhhc--CCCCEEEEEeCCCCCccccC--HHHHHHHHH-cCCeEEEeccCCCCChHHHHH
Q 030504 91 IMFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNRQVK--AKQVTFHRK-KNLQYYEISAKSNYNFEKPFL 165 (176)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~liv~nK~Dl~~~~~~--~~~~~~~~~-~~~~~~~~S~~~~~~v~~~~~ 165 (176)
+|||++++.+|+.+..|+..+.+.. ++.|+++|+||+|+...... ++...++++ .+++|++|||++|.||+++|.
T Consensus 80 lv~d~~~~~sf~~~~~~~~~~~~~~~~~~~p~ilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sak~g~gv~e~F~ 159 (167)
T d1c1ya_ 80 LVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFY 159 (167)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHHCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTSCEEEECBTTTTBSHHHHHH
T ss_pred EeeeccchhhhHhHHHHHHHHHHhcCCCCCeEEEEEEecCcccccccchhHHHHHHHHhCCCEEEEEcCCCCcCHHHHHH
Confidence 9999999999999999998887643 57899999999999864433 334577766 578999999999999999999
Q ss_pred HHHHHHh
Q 030504 166 YLARKLA 172 (176)
Q Consensus 166 ~l~~~i~ 172 (176)
+|+++|.
T Consensus 160 ~l~~~i~ 166 (167)
T d1c1ya_ 160 DLVRQIN 166 (167)
T ss_dssp HHHHHHT
T ss_pred HHHHHhc
Confidence 9999875
|
| >d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoA species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=3.3e-38 Score=206.09 Aligned_cols=160 Identities=29% Similarity=0.493 Sum_probs=138.2
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccccccccccEEEEE
Q 030504 13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIM 92 (176)
Q Consensus 13 ~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 92 (176)
..||+++|.+|||||||+++|..+.+.+.+.||.+ +........++..+.+.+||++|++.+...+..+++++|++++|
T Consensus 2 r~KivvvG~~~vGKTsLi~~~~~~~f~~~~~~t~~-~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv 80 (177)
T d1kmqa_ 2 RKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVF-ENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMC 80 (177)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSE-EEEEEEEEETTEEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEE
T ss_pred cEEEEEECCCCcCHHHHHHHHHhCCCCCCcCCcee-eeccccccccccceeeeccccCccchhcccchhhcccchhhhhh
Confidence 47999999999999999999999999998889887 44555667788899999999999999999999999999999999
Q ss_pred EeCCChhhhhhHHH-HHHHHhhhcCCCCEEEEEeCCCCCccc--------------cCHHHHHHHHHcC-CeEEEeccCC
Q 030504 93 FDVTARLTYKNVPT-WHRDLCRVCENIPIVLCGNKVDVKNRQ--------------VKAKQVTFHRKKN-LQYYEISAKS 156 (176)
Q Consensus 93 ~d~~~~~s~~~~~~-~~~~~~~~~~~~p~liv~nK~Dl~~~~--------------~~~~~~~~~~~~~-~~~~~~S~~~ 156 (176)
||++++.+|+.+.. |...+....++.|+++|+||+|+.... ...+...+++..+ .+|++|||++
T Consensus 81 ~d~~~~~Sf~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~v~~~e~~~~a~~~~~~~~~E~SAkt 160 (177)
T d1kmqa_ 81 FSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKT 160 (177)
T ss_dssp EETTCHHHHHHHHHTHHHHHHHHSTTSCEEEEEECGGGTTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCTTT
T ss_pred cccchhHHHHHHHHHHHHHHHHhCCCCceEEeeecccccchhhHHHHHHHhhcccccHHHHHHHHHHcCCcEEEEecCCC
Confidence 99999999998875 455555566789999999999986522 1234567888877 5899999999
Q ss_pred CCChHHHHHHHHHHHhc
Q 030504 157 NYNFEKPFLYLARKLAG 173 (176)
Q Consensus 157 ~~~v~~~~~~l~~~i~~ 173 (176)
|.|++++|+.+++++.+
T Consensus 161 ~~gi~e~F~~i~~~~l~ 177 (177)
T d1kmqa_ 161 KDGVREVFEMATRAALQ 177 (177)
T ss_dssp CTTHHHHHHHHHHHHHC
T ss_pred CcCHHHHHHHHHHHHhC
Confidence 99999999999998864
|
| >d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rad species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=6.2e-39 Score=207.83 Aligned_cols=159 Identities=18% Similarity=0.242 Sum_probs=125.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccccccccccEEEEEE
Q 030504 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMF 93 (176)
Q Consensus 14 ~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 93 (176)
|||+++|.+|||||||+++|.+..+.. ..++.+.. ....+..++..+.+.+||++|++.+..++..+++++|++++||
T Consensus 2 fKi~lvG~~~vGKTsLi~~~~~~~~~~-~~~~~~~~-~~~~i~~~~~~~~l~i~D~~g~e~~~~~~~~~~~~~d~~ilv~ 79 (168)
T d2gjsa1 2 YKVLLLGAPGVGKSALARIFGGVEDGP-EAEAAGHT-YDRSIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIVY 79 (168)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTC----------CEE-EEEEEEETTEEEEEEEEECC-------CHHHHHTSCSEEEEEE
T ss_pred eEEEEECCCCcCHHHHHHHHhCCccCC-cCCeeeee-ecceeeccccccceeeeecccccccceecccchhhhhhhceec
Confidence 799999999999999999987766543 34444433 3445667888999999999999999999999999999999999
Q ss_pred eCCChhhhhhHHHHHHHHhhhc--CCCCEEEEEeCCCCCcccc--CHHHHHHHHHcCCeEEEeccCCCCChHHHHHHHHH
Q 030504 94 DVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNRQV--KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLAR 169 (176)
Q Consensus 94 d~~~~~s~~~~~~~~~~~~~~~--~~~p~liv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l~~ 169 (176)
|++++.+++.+..|+..+.... ...|+++|+||+|+..... ..+...+++..+++|++|||++|.|++++|.+|++
T Consensus 80 d~t~~~s~~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~~~~v~~~f~~l~~ 159 (168)
T d2gjsa1 80 SVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVVR 159 (168)
T ss_dssp ETTCHHHHHHHHHHHHHHHHHCC--CCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTSEEEECBTTTTBSHHHHHHHHHH
T ss_pred cccccccccccccccchhhcccccccceEEEeecccchhhhcchhHHHHHHHHHhcCCEEEEEeCCCCcCHHHHHHHHHH
Confidence 9999999999999999887654 4789999999999986432 34567889999999999999999999999999999
Q ss_pred HHhcC
Q 030504 170 KLAGS 174 (176)
Q Consensus 170 ~i~~~ 174 (176)
.+.++
T Consensus 160 ~i~~~ 164 (168)
T d2gjsa1 160 QIRLR 164 (168)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 88765
|
| >d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rac species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1.8e-38 Score=208.35 Aligned_cols=165 Identities=26% Similarity=0.475 Sum_probs=142.4
Q ss_pred CCCeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccccccccccEE
Q 030504 10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCA 89 (176)
Q Consensus 10 ~~~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~ 89 (176)
.++.+||+++|.+|||||||+++|+.+.+...+.+|.+ +........++..+.+.+||++|++.+...+..+++.+|++
T Consensus 2 ~p~~iKivviG~~~vGKTsli~~~~~~~f~~~~~~ti~-~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~ 80 (183)
T d1mh1a_ 2 SPQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVF-DNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVS 80 (183)
T ss_dssp CCEEEEEEEECSTTSSHHHHHHHHHHSSCCSSCCCCSC-CEEEEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEE
T ss_pred CceeEEEEEECCCCCCHHHHHHHHHhCCCCccccccee-eceeeeeeccCcceEEEeecccccccchhhhhhccccccee
Confidence 36789999999999999999999999999999999887 44555667788999999999999999999999999999999
Q ss_pred EEEEeCCChhhhhhHHH-HHHHHhhhcCCCCEEEEEeCCCCCccc--------------cCHHHHHHHHHcC-CeEEEec
Q 030504 90 IIMFDVTARLTYKNVPT-WHRDLCRVCENIPIVLCGNKVDVKNRQ--------------VKAKQVTFHRKKN-LQYYEIS 153 (176)
Q Consensus 90 i~v~d~~~~~s~~~~~~-~~~~~~~~~~~~p~liv~nK~Dl~~~~--------------~~~~~~~~~~~~~-~~~~~~S 153 (176)
++|||++++.+|+.+.. |...+....++.|+++|+||+|+.... ...+...+++..+ ++|+|||
T Consensus 81 ilv~d~~~~~sf~~i~~~~~~~~~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~E~S 160 (183)
T d1mh1a_ 81 LICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECS 160 (183)
T ss_dssp EEEEETTCHHHHHHHHHTHHHHHHHHSTTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECC
T ss_pred eeeeccchHHHHHHHHHHHHHHHHHhCCCCcEEEEeecccchhhhhhhhhhhhccccchhhHHHHHHHHHcCCceEEEcC
Confidence 99999999999999875 555555666789999999999986432 1224557777776 7999999
Q ss_pred cCCCCChHHHHHHHHHHHhcCC
Q 030504 154 AKSNYNFEKPFLYLARKLAGST 175 (176)
Q Consensus 154 ~~~~~~v~~~~~~l~~~i~~~~ 175 (176)
|++|.||+++|.+|++.+.+.|
T Consensus 161 Ak~~~~V~e~F~~l~~~il~pp 182 (183)
T d1mh1a_ 161 ALTQRGLKTVFDEAIRAVLCPP 182 (183)
T ss_dssp TTTCTTHHHHHHHHHHHHSCCC
T ss_pred CCCCcCHHHHHHHHHHHHcCCC
Confidence 9999999999999999998765
|
| >d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap2a species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1.1e-38 Score=206.61 Aligned_cols=161 Identities=27% Similarity=0.523 Sum_probs=142.6
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccccccccccEEE
Q 030504 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (176)
Q Consensus 11 ~~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 90 (176)
++++||+++|.+|||||||+++|+.+.+.+.+.++.+ +........++..+.+.+||++|++.+...+..+++++++++
T Consensus 1 mk~~Ki~lvG~~~vGKTsLi~r~~~~~f~~~~~~t~~-~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~a~~~i 79 (167)
T d1kaoa_ 1 MREYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIE-DFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFI 79 (167)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCC-EEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEE
T ss_pred CceeEEEEECCCCcCHHHHHHHHHhCCCCCccCCcee-eeeeeeeecCcceEeeccccCCCccccccchHHHhhccccee
Confidence 4689999999999999999999999999998888887 445556677888999999999999999999999999999999
Q ss_pred EEEeCCChhhhhhHHHHHHHHhhhc--CCCCEEEEEeCCCCCccc--cCHHHHHHHHHcCCeEEEeccCCCCChHHHHHH
Q 030504 91 IMFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNRQ--VKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLY 166 (176)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~liv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~ 166 (176)
+|||++++.++..+..|+..+.... ++.|+++|+||+|+.... ...+...+++..++++++|||++|.|++++|.+
T Consensus 80 lv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sak~g~~i~e~f~~ 159 (167)
T d1kaoa_ 80 LVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESEREVSSSEGRALAEEWGCPFMETSAKSKTMVDELFAE 159 (167)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTSCEEEECTTCHHHHHHHHHH
T ss_pred eeeeecchhhhhhhhchhhhhhhhccCCCCCEEEEEEccchhhcccchHHHHHHHHHHcCCeEEEECCCCCcCHHHHHHH
Confidence 9999999999999999988876543 688999999999987533 234566888999999999999999999999999
Q ss_pred HHHHHh
Q 030504 167 LARKLA 172 (176)
Q Consensus 167 l~~~i~ 172 (176)
|++++.
T Consensus 160 i~~~i~ 165 (167)
T d1kaoa_ 160 IVRQMN 165 (167)
T ss_dssp HHHHHH
T ss_pred HHHHHc
Confidence 999874
|
| >d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab8a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=5.1e-39 Score=209.18 Aligned_cols=162 Identities=29% Similarity=0.568 Sum_probs=117.5
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccccccccccEEEEE
Q 030504 13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIM 92 (176)
Q Consensus 13 ~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 92 (176)
-+||+++|.++||||||+++++.+.+...+.++.+.+.....+..++..+.+.+||+||++.+..++..+++++|++|+|
T Consensus 6 ~~Ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~e~~~~~~~~~~~~~~~~i~v 85 (173)
T d2fu5c1 6 LFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIMLV 85 (173)
T ss_dssp EEEEEEECCCCC----------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC---------CCTTTTTCSEEEEE
T ss_pred EEEEEEECCCCcCHHHHHHHHHhCCCCCccCccccceEEEEEEEECCEEEEEEEEECCCchhhHHHHHHhccCCCEEEEE
Confidence 48999999999999999999999999888889999899888899998999999999999999999999999999999999
Q ss_pred EeCCChhhhhhHHHHHHHHhhh-cCCCCEEEEEeCCCCCcccc--CHHHHHHHHHcCCeEEEeccCCCCChHHHHHHHHH
Q 030504 93 FDVTARLTYKNVPTWHRDLCRV-CENIPIVLCGNKVDVKNRQV--KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLAR 169 (176)
Q Consensus 93 ~d~~~~~s~~~~~~~~~~~~~~-~~~~p~liv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l~~ 169 (176)
||++++.+++.+..|...+... ..+.|+++|+||+|+..... ..+...++...++++++|||++|.|++++|.+|++
T Consensus 86 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~g~gv~e~f~~l~~ 165 (173)
T d2fu5c1 86 YDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLAR 165 (173)
T ss_dssp EETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEEC--CCSCCCSCHHHHHHHHHHHTCEEEECCC---CCHHHHHHHHHH
T ss_pred EECCChhhHHHHHHHHHHhhhhccCCceEEEEEecccchhhcccHHHHHHHHHHhcCCEEEEEeCCCCCCHHHHHHHHHH
Confidence 9999999999999988887654 36899999999999886433 33466888899999999999999999999999999
Q ss_pred HHhcC
Q 030504 170 KLAGS 174 (176)
Q Consensus 170 ~i~~~ 174 (176)
.+.++
T Consensus 166 ~i~~k 170 (173)
T d2fu5c1 166 DIKAK 170 (173)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 98765
|
| >d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: CDC42 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=7.8e-38 Score=206.55 Aligned_cols=163 Identities=24% Similarity=0.414 Sum_probs=140.8
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccccccccccEEEE
Q 030504 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAII 91 (176)
Q Consensus 12 ~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~ 91 (176)
+.+||+++|.+|||||||+++|..+.+...+.||.+ ..........+..+.+.+||++|++++...+..+++.+|++++
T Consensus 2 ~~iKvvllG~~~vGKTSli~r~~~~~f~~~~~~t~~-~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~il 80 (191)
T d2ngra_ 2 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVF-DNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLV 80 (191)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSE-EEEEEEEEETTEEEEEEEEEECCSGGGTTTGGGGCTTCSEEEE
T ss_pred CceEEEEECCCCcCHHHHHHHHHhCCCCCCcCCcee-eecceeEeeCCceeeeeccccccchhhhhhhhhcccccceeec
Confidence 469999999999999999999999999999999987 4445556678888999999999999999999999999999999
Q ss_pred EEeCCChhhhhhHHH-HHHHHhhhcCCCCEEEEEeCCCCCccc--------------cCHHHHHHHHHc-CCeEEEeccC
Q 030504 92 MFDVTARLTYKNVPT-WHRDLCRVCENIPIVLCGNKVDVKNRQ--------------VKAKQVTFHRKK-NLQYYEISAK 155 (176)
Q Consensus 92 v~d~~~~~s~~~~~~-~~~~~~~~~~~~p~liv~nK~Dl~~~~--------------~~~~~~~~~~~~-~~~~~~~S~~ 155 (176)
|||++++.+|+.+.. |...+....++.|+++|+||+|+.... ...+..++++.. +++|++|||+
T Consensus 81 v~d~~~~~Sf~~~~~~~~~~~~~~~~~~~i~lvgnK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk 160 (191)
T d2ngra_ 81 CFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSAL 160 (191)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHTTCSCEEECCTT
T ss_pred ccccchHHHHHHHHHHHHHHHhhcCCCCceEEEeccccccccchhhhhhhhcccccccHHHHHHHHHHcCCCeEEEEeCC
Confidence 999999999999975 555555656799999999999986421 223455778775 5799999999
Q ss_pred CCCChHHHHHHHHHHHhcCC
Q 030504 156 SNYNFEKPFLYLARKLAGST 175 (176)
Q Consensus 156 ~~~~v~~~~~~l~~~i~~~~ 175 (176)
+|.||+++|+.+++.+.+.+
T Consensus 161 ~~~~V~e~f~~l~~~~~~~~ 180 (191)
T d2ngra_ 161 TQKGLKNVFDEAILAALEPP 180 (191)
T ss_dssp TCTTHHHHHHHHHHHHTSCC
T ss_pred CCcCHHHHHHHHHHHHhcCc
Confidence 99999999999999988765
|
| >d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Ytp1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=5.7e-38 Score=207.64 Aligned_cols=162 Identities=30% Similarity=0.562 Sum_probs=146.0
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccccccccccEEEEE
Q 030504 13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIM 92 (176)
Q Consensus 13 ~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 92 (176)
.+||+|+|.++||||||+++|..+.+...+.++.+.+.....+.+.+..+.+.+|||+|++++..++..+++.++++|+|
T Consensus 6 ~~KivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~~i~v 85 (194)
T d2bcgy1 6 LFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSHGIIIV 85 (194)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGGTTCSEEEEE
T ss_pred EEEEEEECCCCcCHHHHHHHHhhCCCCCCcCCccceeEEEEEEEEeeEEEEEEEEECCCchhhHHHHHHHhccCCEEEEE
Confidence 48999999999999999999999999999999999888888888888999999999999999999999999999999999
Q ss_pred EeCCChhhhhhHHHHHHHHhhh-cCCCCEEEEEeCCCCCcccc--CHHHHHHHHHcCCeEEEeccCCCCChHHHHHHHHH
Q 030504 93 FDVTARLTYKNVPTWHRDLCRV-CENIPIVLCGNKVDVKNRQV--KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLAR 169 (176)
Q Consensus 93 ~d~~~~~s~~~~~~~~~~~~~~-~~~~p~liv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l~~ 169 (176)
||++++.++..+..|+..+.+. ....|+++|+||+|+.+... .++...+++..++.+++|||++|.|++++|+++++
T Consensus 86 ~d~t~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~e~SAk~g~gi~e~f~~l~~ 165 (194)
T d2bcgy1 86 YDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMAR 165 (194)
T ss_dssp EETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCCEEECCTTTCTTHHHHHHHHHH
T ss_pred EeCcchhhhhhHhhhhhhhhhcccCCceEEEEEeccccccccchhHHHHhhhhhccCcceEEEecCcCccHHHHHHHHHH
Confidence 9999999999999888877654 46889999999999986333 33456888889999999999999999999999999
Q ss_pred HHhcC
Q 030504 170 KLAGS 174 (176)
Q Consensus 170 ~i~~~ 174 (176)
.+.+.
T Consensus 166 ~i~~~ 170 (194)
T d2bcgy1 166 QIKES 170 (194)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 88754
|
| >d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab2b species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=3.2e-38 Score=205.36 Aligned_cols=161 Identities=32% Similarity=0.567 Sum_probs=140.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccccccccccEEEEEE
Q 030504 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMF 93 (176)
Q Consensus 14 ~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 93 (176)
+||+++|++|||||||+++++.+++.+.+.++.+.+............+.+.+||++|++.+...+..++..+|++++||
T Consensus 4 ~KivvvG~~~vGKTsli~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~ilv~ 83 (173)
T d2a5ja1 4 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVY 83 (173)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEETTEEEEEEEECCTTGGGTSCCCHHHHTTCSEEEEEE
T ss_pred EEEEEECCCCcCHHHHHHHHhcCCCCCCcccceeeccceeeeeeeeeEEEEEeecccCccchhhHHHHHhhccCEEEEEE
Confidence 79999999999999999999999999888888877777777777888999999999999999999999999999999999
Q ss_pred eCCChhhhhhHHHHHHHHhhhc-CCCCEEEEEeCCCCCccc--cCHHHHHHHHHcCCeEEEeccCCCCChHHHHHHHHHH
Q 030504 94 DVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNRQ--VKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARK 170 (176)
Q Consensus 94 d~~~~~s~~~~~~~~~~~~~~~-~~~p~liv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l~~~ 170 (176)
|++++.+++.+..|+..+.+.. ++.|+++|+||+|+.... ...+...+++..+++|++|||++|.||+++|.++++.
T Consensus 84 d~~~~~sf~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~a~~~~~~~~e~Sa~tg~~V~e~f~~i~~~ 163 (173)
T d2a5ja1 84 DITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLESRRDVKREEGEAFAREHGLIFMETSAKTACNVEEAFINTAKE 163 (173)
T ss_dssp ETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEECTTTCTTHHHHHHHHHHH
T ss_pred eecChHHHHhHHHHHHHHHHhCCCCCeEEEEecCCchhhhhhhHHHHHHHHHHHcCCEEEEecCCCCCCHHHHHHHHHHH
Confidence 9999999999999988887654 689999999999987533 3345678899999999999999999999999999998
Q ss_pred HhcC
Q 030504 171 LAGS 174 (176)
Q Consensus 171 i~~~ 174 (176)
+.++
T Consensus 164 i~~~ 167 (173)
T d2a5ja1 164 IYRK 167 (173)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7754
|
| >d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab11b species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=6.3e-38 Score=204.35 Aligned_cols=160 Identities=33% Similarity=0.589 Sum_probs=141.5
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccccccccccEEEEE
Q 030504 13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIM 92 (176)
Q Consensus 13 ~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 92 (176)
.+||+++|.+|||||||++++..+.+...+.++.+.+.....+..++..+.+.+||++|++.+...+..++++++++++|
T Consensus 4 ~~Ki~vvG~~~vGKTsLi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~e~~~~~~~~~~~~~~~~i~v 83 (175)
T d2f9la1 4 LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGALLV 83 (175)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCCCHHHHTTCSEEEEE
T ss_pred EEEEEEECCCCcCHHHHHHHHHhCCCCCcccccccceeeeEEEEECCEEEEEEecccCCcHHHHHHHHHHhhccCeEEEE
Confidence 48999999999999999999999999988888888888888888888999999999999999999999999999999999
Q ss_pred EeCCChhhhhhHHHHHHHHhhhc-CCCCEEEEEeCCCCCcccc-C-HHHHHHHHHcCCeEEEeccCCCCChHHHHHHHHH
Q 030504 93 FDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNRQV-K-AKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLAR 169 (176)
Q Consensus 93 ~d~~~~~s~~~~~~~~~~~~~~~-~~~p~liv~nK~Dl~~~~~-~-~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l~~ 169 (176)
||.+++.+++.+..|+..+.+.. ++.|+++|+||+|+.+... . .....+.+..+.++++|||++|.|++++|+++++
T Consensus 84 ~d~~~~~S~~~~~~~~~~i~~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~g~~i~e~f~~l~~ 163 (175)
T d2f9la1 84 YDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILT 163 (175)
T ss_dssp EETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHHH
T ss_pred EECCCcccchhHHHHHHHHHHhcCCCCcEEEEEeeecccccccchHHHHHHhhcccCceEEEEecCCCcCHHHHHHHHHH
Confidence 99999999999999998887665 5789999999999986432 2 3446777888999999999999999999999999
Q ss_pred HHh
Q 030504 170 KLA 172 (176)
Q Consensus 170 ~i~ 172 (176)
.+.
T Consensus 164 ~i~ 166 (175)
T d2f9la1 164 EIY 166 (175)
T ss_dssp HHH
T ss_pred HHH
Confidence 865
|
| >d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein Sec4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=4.2e-38 Score=203.57 Aligned_cols=162 Identities=27% Similarity=0.547 Sum_probs=141.1
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccccccccccEEEEE
Q 030504 13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIM 92 (176)
Q Consensus 13 ~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 92 (176)
-+||+++|.++||||||++++..+++...+.++.+.++....+..++..+.+.+|||||++.+..++..++++++++++|
T Consensus 2 ~~Ki~vvG~~~vGKTSli~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v 81 (166)
T d1g16a_ 2 IMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRGAMGIILV 81 (166)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHCCCCC-------CCEEEEEEESSSCEEEEEEECCTTGGGTSCCCHHHHTTEEEEEEE
T ss_pred EEEEEEECCCCcCHHHHHHHHHhCCCCCccCCccceeEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhcCCEEEEE
Confidence 48999999999999999999999999999999999999999998999999999999999999999999999999999999
Q ss_pred EeCCChhhhhhHHHHHHHHhhhc-CCCCEEEEEeCCCCCccccC-HHHHHHHHHcCCeEEEeccCCCCChHHHHHHHHHH
Q 030504 93 FDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNRQVK-AKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARK 170 (176)
Q Consensus 93 ~d~~~~~s~~~~~~~~~~~~~~~-~~~p~liv~nK~Dl~~~~~~-~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l~~~ 170 (176)
||.+++.+++.+..|+....... ...|++++++|.|+..+... .+..++++..++++++|||++|.|++++|.+|++.
T Consensus 82 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~i~~~~k~d~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~e~f~~l~~~ 161 (166)
T d1g16a_ 82 YDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDMETRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKL 161 (166)
T ss_dssp EETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCTTCCSCHHHHHHHHHHHTCCEEECBTTTTBSHHHHHHHHHHH
T ss_pred EECCCccCHHHHHhhhhhhhccccCcceeeeecchhhhhhhhhhHHHHHHHHHhcCCeEEEECCCCCCCHHHHHHHHHHH
Confidence 99999999999998877776654 57889999999999875544 45668889999999999999999999999999999
Q ss_pred HhcC
Q 030504 171 LAGS 174 (176)
Q Consensus 171 i~~~ 174 (176)
+.++
T Consensus 162 i~~k 165 (166)
T d1g16a_ 162 IQEK 165 (166)
T ss_dssp HHHT
T ss_pred HHhc
Confidence 8875
|
| >d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ypt51 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=5.9e-38 Score=203.63 Aligned_cols=162 Identities=32% Similarity=0.581 Sum_probs=145.6
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccccccccccEEEE
Q 030504 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAII 91 (176)
Q Consensus 12 ~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~ 91 (176)
..+||+++|.+|||||||+++|..+++...+.++.+.++....+...+..+.+.+||++|++.+...+..++..+|++++
T Consensus 2 ~~iKi~vvG~~~vGKTsLi~~~~~~~f~~~~~~t~~~~~~~~~i~~~~~~~~l~i~d~~g~~~~~~~~~~~~~~~~~~il 81 (170)
T d1ek0a_ 2 TSIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLAPMYYRNAQAALV 81 (170)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEE
T ss_pred cEEEEEEECCCCcCHHHHHHHHHhCCCCccccccccceeeccccccccccccccccccCCchhHHHHHHHHHhccceEEE
Confidence 46899999999999999999999999999999999988888888889999999999999999999999999999999999
Q ss_pred EEeCCChhhhhhHHHHHHHHhhhc-CCCCEEEEEeCCCCCcc----c-cCHHHHHHHHHcCCeEEEeccCCCCChHHHHH
Q 030504 92 MFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNR----Q-VKAKQVTFHRKKNLQYYEISAKSNYNFEKPFL 165 (176)
Q Consensus 92 v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~liv~nK~Dl~~~----~-~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~ 165 (176)
|||++++.+++.+..|+....... ...|+++++||+|+.+. . ...+..++++..+++|++|||++|.||+++|.
T Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~v~nk~d~~~~~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~gV~e~F~ 161 (170)
T d1ek0a_ 82 VYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDMLQEGGERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVFL 161 (170)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGSSCCCCSCHHHHHHHHHHHTCEEEECCTTTCTTHHHHHH
T ss_pred EEeCCcccchhhhhhhhhhhccccccccceeeeecccccccccchhhhhHHHHHHHHHHcCCEEEEecCCCCcCHHHHHH
Confidence 999999999999999887765543 57899999999998642 2 23456789999999999999999999999999
Q ss_pred HHHHHHhc
Q 030504 166 YLARKLAG 173 (176)
Q Consensus 166 ~l~~~i~~ 173 (176)
+|+++|..
T Consensus 162 ~i~~~i~~ 169 (170)
T d1ek0a_ 162 GIGEKIPL 169 (170)
T ss_dssp HHHTTSCC
T ss_pred HHHHHhcc
Confidence 99987753
|
| >d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-like estrogen-regulated growth inhibitor, RERG species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=7.6e-38 Score=202.67 Aligned_cols=160 Identities=28% Similarity=0.412 Sum_probs=137.1
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccccccccccEEEEE
Q 030504 13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIM 92 (176)
Q Consensus 13 ~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 92 (176)
++||+++|.+|||||||+++|..+.+.+.+.||.+..+... ...++..+.+.+||++|++.+. ....++++++++++|
T Consensus 2 eiKi~lvG~~~vGKTsli~r~~~~~f~~~~~pTi~~~~~~~-~~~~~~~~~l~i~D~~g~~~~~-~~~~~~~~~~~~ilv 79 (168)
T d2atva1 2 EVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQ-ATIDDEVVSMEILDTAGQEDTI-QREGHMRWGEGFVLV 79 (168)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEE-EEETTEEEEEEEEECCCCCCCH-HHHHHHHHCSEEEEE
T ss_pred cEEEEEECCCCCCHHHHHHHHHhCCCCCccCCceecccccc-ccccccceEEEEeecccccccc-cchhhhcccccceee
Confidence 58999999999999999999999999999999998765444 4567788999999999998764 456688899999999
Q ss_pred EeCCChhhhhhHHHHHHHHhhh--cCCCCEEEEEeCCCCCcc-cc-CHHHHHHHHHcCCeEEEeccCCCC-ChHHHHHHH
Q 030504 93 FDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNR-QV-KAKQVTFHRKKNLQYYEISAKSNY-NFEKPFLYL 167 (176)
Q Consensus 93 ~d~~~~~s~~~~~~~~~~~~~~--~~~~p~liv~nK~Dl~~~-~~-~~~~~~~~~~~~~~~~~~S~~~~~-~v~~~~~~l 167 (176)
||++++.+++.+..|+...... .++.|+++|+||+|+... .+ .++...++++++++|++|||++|. ||+++|.+|
T Consensus 80 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~r~V~~~e~~~~a~~~~~~~~e~Saktg~gnV~e~F~~l 159 (168)
T d2atva1 80 YDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDHSRQVSTEEGEKLATELACAFYECSACTGEGNITEIFYEL 159 (168)
T ss_dssp EETTCHHHHHTHHHHHHHHHHHHTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTSEEEECCTTTCTTCHHHHHHHH
T ss_pred cccCCccchhhhhhhcccccccccccCcceeeeccchhhhhhccCcHHHHHHHHHHhCCeEEEEccccCCcCHHHHHHHH
Confidence 9999999999999877655433 368999999999999764 33 345678999999999999999998 599999999
Q ss_pred HHHHhcC
Q 030504 168 ARKLAGS 174 (176)
Q Consensus 168 ~~~i~~~ 174 (176)
++.+.++
T Consensus 160 ~~~i~~~ 166 (168)
T d2atva1 160 CREVRRR 166 (168)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 9998765
|
| >d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab26 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=4.9e-37 Score=199.23 Aligned_cols=161 Identities=29% Similarity=0.595 Sum_probs=134.5
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCCCCCc-cccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccccccccccEEEE
Q 030504 13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKK-YEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAII 91 (176)
Q Consensus 13 ~~~i~i~G~~~~GKttl~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~ 91 (176)
.+||+++|+++||||||+++|+.+++... +.++.+.+.....+..++..+.+.+|||+|++.+...+..+++++|++++
T Consensus 6 ~fKi~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~~d~~i~ 85 (170)
T d2g6ba1 6 AFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHAYYRDAHALLL 85 (170)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC--------CCGGGCSEEEE
T ss_pred EEEEEEECCCCcCHHHHHHHHHhCCCCcccccceeeeeeEEEEEEecCcEEEEEEEECCCchhhHHHHHHhhcCCceeEE
Confidence 58999999999999999999999987644 45566778888888888899999999999999999999999999999999
Q ss_pred EEeCCChhhhhhHHHHHHHHhhhc-CCCCEEEEEeCCCCCcccc--CHHHHHHHHHcCCeEEEeccCCCCChHHHHHHHH
Q 030504 92 MFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNRQV--KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLA 168 (176)
Q Consensus 92 v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~liv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l~ 168 (176)
|||++++.+++.+..|+..+.... ...|+++|+||+|+..+.. ..+...+++..+++|++|||++|.|++++|.+|+
T Consensus 86 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~~k~d~~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~gi~e~f~~l~ 165 (170)
T d2g6ba1 86 LYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVDSAHERVVKREDGEKLAKEYGLPFMETSAKTGLNVDLAFTAIA 165 (170)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECCSTTSCCCSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHHHH
T ss_pred EecCCcccchhhhhhhhhhhhhccCCCceEEEEEeeechhhcccccHHHHHHHHHHcCCEEEEEeCCCCcCHHHHHHHHH
Confidence 999999999999998887776554 5789999999999987533 3346688999999999999999999999999999
Q ss_pred HHHhc
Q 030504 169 RKLAG 173 (176)
Q Consensus 169 ~~i~~ 173 (176)
+.+.+
T Consensus 166 ~~i~k 170 (170)
T d2g6ba1 166 KELKR 170 (170)
T ss_dssp HHHHC
T ss_pred HHcCC
Confidence 98863
|
| >d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab9a species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1e-36 Score=198.47 Aligned_cols=163 Identities=32% Similarity=0.637 Sum_probs=141.7
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccccccccccEEE
Q 030504 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (176)
Q Consensus 11 ~~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 90 (176)
.+.+||+++|.++||||||+++|..+.+...+.++.+...........+..+.+.+||++|.......+..++..+++++
T Consensus 4 ~~~~KI~vvG~~~vGKSSli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i 83 (174)
T d1wmsa_ 4 SSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDCCL 83 (174)
T ss_dssp EEEEEEEEECCTTSSHHHHHHHHHHSCCCC----CCSEEEEEEEEEETTEEEEEEEEECCCCGGGHHHHGGGGTTCSEEE
T ss_pred CceEEEEEECCCCCCHHHHHHHHHhCCCCCccccceeeeeeeeeeeecCceeeEeeecccCcceehhhhhhhhhccceEE
Confidence 46789999999999999999999999999999999998888888888889999999999999999999999999999999
Q ss_pred EEEeCCChhhhhhHHHHHHHHhhhc-----CCCCEEEEEeCCCCCccccCH-HHHHHHHHc-CCeEEEeccCCCCChHHH
Q 030504 91 IMFDVTARLTYKNVPTWHRDLCRVC-----ENIPIVLCGNKVDVKNRQVKA-KQVTFHRKK-NLQYYEISAKSNYNFEKP 163 (176)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~~-----~~~p~liv~nK~Dl~~~~~~~-~~~~~~~~~-~~~~~~~S~~~~~~v~~~ 163 (176)
+++|.+++.+++.+..|++.+.... ++.|+++|+||+|+..+.... +..+++++. .++|++|||++|.||+++
T Consensus 84 ~~~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~piilVgnK~Dl~~~~v~~~~~~~~~~~~~~~~~~e~Sak~~~gI~e~ 163 (174)
T d1wmsa_ 84 LTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDISERQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAA 163 (174)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCSSCSSCHHHHHHHHHHTTCCCEEECCTTTCTTHHHH
T ss_pred EEEeeecccccchhhhHHHHHHHHhccccCCCceEEEeccccchhhccCcHHHHHHHHHHcCCCeEEEEcCCCCcCHHHH
Confidence 9999999999999999988776542 478999999999997655444 566888876 489999999999999999
Q ss_pred HHHHHHHHhc
Q 030504 164 FLYLARKLAG 173 (176)
Q Consensus 164 ~~~l~~~i~~ 173 (176)
|.+|++.+..
T Consensus 164 f~~l~~~il~ 173 (174)
T d1wmsa_ 164 FEEAVRRVLA 173 (174)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHhc
Confidence 9999998864
|
| >d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab27b species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=7.5e-38 Score=205.89 Aligned_cols=162 Identities=33% Similarity=0.565 Sum_probs=140.6
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecC----------cEEEEEEEeCCCccccccccccc
Q 030504 13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNC----------GKIRFYCWDTAGQEKFGGLRDGY 82 (176)
Q Consensus 13 ~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~D~~g~~~~~~~~~~~ 82 (176)
.+||+++|.+|||||||+++|..+.+...+.++.+.++.......+. ..+.+.+|||+|++.+..++..+
T Consensus 5 ~~Ki~ivG~~~vGKTsLi~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~dt~G~e~~~~~~~~~ 84 (186)
T d2f7sa1 5 LIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERFRSLTTAF 84 (186)
T ss_dssp EEEEEEESCTTSSHHHHHHHHHCSCCCCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHHHHHHHHHHH
T ss_pred EEEEEEECCCCcCHHHHHHHHhcCCCCCccCCcccceeeEEEEEEecccccccccccceEEeccccCCcchhhHHHHHHH
Confidence 48999999999999999999999999988888888777666654433 34689999999999999999999
Q ss_pred cccccEEEEEEeCCChhhhhhHHHHHHHHhhh--cCCCCEEEEEeCCCCCccc-c-CHHHHHHHHHcCCeEEEeccCCCC
Q 030504 83 YIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQ-V-KAKQVTFHRKKNLQYYEISAKSNY 158 (176)
Q Consensus 83 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~--~~~~p~liv~nK~Dl~~~~-~-~~~~~~~~~~~~~~~~~~S~~~~~ 158 (176)
++++|++|+|||++++.+++.+..|+..+... .+..|+++|+||+|+.... + ..+..++++++++++++|||++|.
T Consensus 85 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iilv~nK~Dl~~~~~v~~~e~~~~~~~~~~~~~e~Sak~~~ 164 (186)
T d2f7sa1 85 FRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLPDQREVNERQARELADKYGIPYFETSAATGQ 164 (186)
T ss_dssp HTTCCEEEEEEETTCHHHHHHHHHHHHTCCCCCTTTCCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCCEEEEBTTTTB
T ss_pred HhcCCEEEEEEeccccccceeeeeccchhhhhccCCCceEEEEeeeccchhhhcchHHHHHHHHHHcCCEEEEEeCCCCC
Confidence 99999999999999999999999998776544 2578899999999997643 3 345678999999999999999999
Q ss_pred ChHHHHHHHHHHHhcC
Q 030504 159 NFEKPFLYLARKLAGS 174 (176)
Q Consensus 159 ~v~~~~~~l~~~i~~~ 174 (176)
|++++|++|++.+.++
T Consensus 165 ~i~e~f~~l~~~i~~k 180 (186)
T d2f7sa1 165 NVEKAVETLLDLIMKR 180 (186)
T ss_dssp THHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHH
Confidence 9999999999988765
|
| >d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab7 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=100.00 E-value=1.3e-36 Score=199.63 Aligned_cols=162 Identities=35% Similarity=0.662 Sum_probs=143.9
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccccccccccEEEEE
Q 030504 13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIM 92 (176)
Q Consensus 13 ~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 92 (176)
-+||+++|.+|||||||++++..+.+...+.+|.+.+.........+..+.+.+||++|.+.+...+..++..++++++|
T Consensus 2 ~~Kv~vvG~~~vGKSSLi~~l~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~~ 81 (184)
T d1vg8a_ 2 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCCVLV 81 (184)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSCSCCGGGTTCSEEEEE
T ss_pred EEEEEEECCCCcCHHHHHHHHHhCCCCCCcCCccceeeeeeeeeeCCceEEEEeeecCCcccccccccccccCccEEEEe
Confidence 37999999999999999999999999999999999999998888888999999999999999999999999999999999
Q ss_pred EeCCChhhhhhHHHHHHHHhhhc-----CCCCEEEEEeCCCCCccccCHH-HHHHHH-HcCCeEEEeccCCCCChHHHHH
Q 030504 93 FDVTARLTYKNVPTWHRDLCRVC-----ENIPIVLCGNKVDVKNRQVKAK-QVTFHR-KKNLQYYEISAKSNYNFEKPFL 165 (176)
Q Consensus 93 ~d~~~~~s~~~~~~~~~~~~~~~-----~~~p~liv~nK~Dl~~~~~~~~-~~~~~~-~~~~~~~~~S~~~~~~v~~~~~ 165 (176)
+|.++..+++.+..|+..+.... .+.|+++|+||+|+..+....+ ...++. ..++++++|||++|.|++++|+
T Consensus 82 ~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~ip~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sak~~~gI~e~f~ 161 (184)
T d1vg8a_ 82 FDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQ 161 (184)
T ss_dssp EETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSSCCCSCHHHHHHHHHHTTSCCEEECBTTTTBSHHHHHH
T ss_pred ecccchhhhhcchhhHHHHHHHhccccccCCCEEEEEEeecccccchhHHHHHHHHHHhcCCeEEEEcCCCCcCHHHHHH
Confidence 99999999999999998776542 3689999999999987555443 445554 4578999999999999999999
Q ss_pred HHHHHHhcC
Q 030504 166 YLARKLAGS 174 (176)
Q Consensus 166 ~l~~~i~~~ 174 (176)
+|++.+.++
T Consensus 162 ~l~~~i~~~ 170 (184)
T d1vg8a_ 162 TIARNALKQ 170 (184)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhc
Confidence 999987654
|
| >d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein ypt7p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=4.1e-37 Score=200.50 Aligned_cols=163 Identities=27% Similarity=0.561 Sum_probs=127.1
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEe-cCcEEEEEEEeCCCccccccccccccccccEEEE
Q 030504 13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFT-NCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAII 91 (176)
Q Consensus 13 ~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~ 91 (176)
-+||+++|.++||||||+++|..+.+.+.+.++.+.+........ ......+.+||++|++.+...+..+++.++++++
T Consensus 2 ~~Ki~~vG~~~vGKSsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~il 81 (175)
T d1ky3a_ 2 ILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAFYRGADCCVL 81 (175)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC----------CCSTTCCEEEE
T ss_pred eEEEEEECCCCcCHHHHHHHHHcCCCCCccCcccccceeeeeeeecCcccccceeeccCCchhhhhHHHHHhhccceEEE
Confidence 489999999999999999999999998888888776666555544 3456778999999999999999999999999999
Q ss_pred EEeCCChhhhhhHHHHHHHHhhhc-----CCCCEEEEEeCCCCCccc--cC-HHHHHHHHHcC-CeEEEeccCCCCChHH
Q 030504 92 MFDVTARLTYKNVPTWHRDLCRVC-----ENIPIVLCGNKVDVKNRQ--VK-AKQVTFHRKKN-LQYYEISAKSNYNFEK 162 (176)
Q Consensus 92 v~d~~~~~s~~~~~~~~~~~~~~~-----~~~p~liv~nK~Dl~~~~--~~-~~~~~~~~~~~-~~~~~~S~~~~~~v~~ 162 (176)
|||++++.+++.+..|+..+.... .+.|+++++||+|+.... .. .+..++++..+ +++++|||++|.|+++
T Consensus 82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~nK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~e~SA~~g~gv~e 161 (175)
T d1ky3a_ 82 VYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKIVSEKSAQELAKSLGDIPLFLTSAKNAINVDT 161 (175)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGCCSCHHHHHHHHHHTTSCCEEEEBTTTTBSHHH
T ss_pred EeecccccccchhhhcchhhhhhhhhcccccCcEEEEecccchhhhhcchhHHHHHHHHHHcCCCeEEEEeCCCCcCHHH
Confidence 999999999999999998876542 478999999999997532 22 34567888875 7999999999999999
Q ss_pred HHHHHHHHHhcCC
Q 030504 163 PFLYLARKLAGST 175 (176)
Q Consensus 163 ~~~~l~~~i~~~~ 175 (176)
+|.+|++.+.++.
T Consensus 162 ~f~~l~~~~l~~~ 174 (175)
T d1ky3a_ 162 AFEEIARSALQQN 174 (175)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcc
Confidence 9999999887764
|
| >d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein GEM species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1.4e-36 Score=197.31 Aligned_cols=163 Identities=20% Similarity=0.311 Sum_probs=134.5
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHhcCCCCC-ccccceeEEEeEEEEEecCcEEEEEEEeCCC---cccccccccccccccc
Q 030504 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEK-KYEPTIGVEVHPLDFFTNCGKIRFYCWDTAG---QEKFGGLRDGYYIHGQ 87 (176)
Q Consensus 12 ~~~~i~i~G~~~~GKttl~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g---~~~~~~~~~~~~~~~~ 87 (176)
..|||+++|.+|||||||+++|..+.+.. ...++.+.+.....+..++..+.+.+||+++ ++++ .+..+++.+|
T Consensus 2 ~~~Kv~lvG~~~vGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~~~~g~e~~--~~~~~~~~~~ 79 (172)
T d2g3ya1 2 TYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWENKGENEW--LHDHCMQVGD 79 (172)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHCCCCTTCCC---CCTTEEEEEEEETTEEEEEEEECCTTTTHHHHH--HHHCCCCCCS
T ss_pred CEEEEEEECCCCcCHHHHHHHHHhCcCCccccccceeeecceeeeccCCceeeeeeeccccccccccc--cccccccccc
Confidence 46899999999999999999988776643 3345566666777778888999999999765 4443 5677889999
Q ss_pred EEEEEEeCCChhhhhhHHHHHHHHhhh--cCCCCEEEEEeCCCCCccc-c-CHHHHHHHHHcCCeEEEeccCCCCChHHH
Q 030504 88 CAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQ-V-KAKQVTFHRKKNLQYYEISAKSNYNFEKP 163 (176)
Q Consensus 88 ~~i~v~d~~~~~s~~~~~~~~~~~~~~--~~~~p~liv~nK~Dl~~~~-~-~~~~~~~~~~~~~~~~~~S~~~~~~v~~~ 163 (176)
++|+|||++++.+++.+..|+..+... .++.|+++|+||+|+.... . ..+..++++.++++|++|||++|.|++++
T Consensus 80 ~~ilvfd~t~~~s~~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sak~g~~i~~~ 159 (172)
T d2g3ya1 80 AYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRCREVSVSEGRACAVVFDCKFIETSAAVQHNVKEL 159 (172)
T ss_dssp EEEEEEETTCHHHHHHHHHHHHHHHTSGGGTTSCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHH
T ss_pred eeeeeecccccchhhhhhhhhhhhhhccccCCceEEEEeccccccccccccHHHHHHHHHHcCCeEEEEeCCCCcCHHHH
Confidence 999999999999999999998887654 3689999999999997643 2 34567889999999999999999999999
Q ss_pred HHHHHHHHhcCCC
Q 030504 164 FLYLARKLAGSTD 176 (176)
Q Consensus 164 ~~~l~~~i~~~~~ 176 (176)
|.+|++.+..+.|
T Consensus 160 f~~l~~~i~~rr~ 172 (172)
T d2g3ya1 160 FEGIVRQVRLRRD 172 (172)
T ss_dssp HHHHHHHHHHHCC
T ss_pred HHHHHHHHHHccC
Confidence 9999999987654
|
| >d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoE (RND3) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=3.6e-36 Score=196.53 Aligned_cols=161 Identities=23% Similarity=0.361 Sum_probs=137.0
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccccccccccEEEEE
Q 030504 13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIM 92 (176)
Q Consensus 13 ~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 92 (176)
..||+++|.+|||||||+++|+.+.+...+.|+.+. ........++..+.+.+||++|++.+...+..+++++|++++|
T Consensus 2 ~~KivliG~~~vGKTsli~r~~~~~f~~~~~~t~~~-~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv 80 (179)
T d1m7ba_ 2 KCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFE-NYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLIC 80 (179)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEE-EEEEEEECSSCEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEE
T ss_pred ceEEEEECCCCcCHHHHHHHHHhCCCCCccCCceee-cccccccccceEEeeccccccccccccccccchhhhhhhhhee
Confidence 479999999999999999999999999999998863 4444566788999999999999999999999999999999999
Q ss_pred EeCCChhhhhhHHHHH-HHHhhhcCCCCEEEEEeCCCCCcc-------------cc-CHHHHHHHHHcC-CeEEEeccCC
Q 030504 93 FDVTARLTYKNVPTWH-RDLCRVCENIPIVLCGNKVDVKNR-------------QV-KAKQVTFHRKKN-LQYYEISAKS 156 (176)
Q Consensus 93 ~d~~~~~s~~~~~~~~-~~~~~~~~~~p~liv~nK~Dl~~~-------------~~-~~~~~~~~~~~~-~~~~~~S~~~ 156 (176)
||++++.+|+.+..|+ ..+....++.|+++|+||+|+... .+ ..+...++++.+ +.|+||||++
T Consensus 81 ~d~~~~~Sf~~~~~~~~~~~~~~~~~~~iilVgnK~Dl~~~~~~~~~~~~~~~~~V~~~e~~~~a~~~~~~~y~E~SAk~ 160 (179)
T d1m7ba_ 81 FDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQ 160 (179)
T ss_dssp EETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEECBTTT
T ss_pred eecccCCCHHHHHHHHHHHHhccCCcceEEEEEecccccccchhhHHHhhhhcCcchHHHHHHHHHHhCCCeEEEEeCCC
Confidence 9999999999988654 445555679999999999998642 12 234567888876 6899999999
Q ss_pred CC-ChHHHHHHHHHHHhcC
Q 030504 157 NY-NFEKPFLYLARKLAGS 174 (176)
Q Consensus 157 ~~-~v~~~~~~l~~~i~~~ 174 (176)
|. |++++|+.+++.+.++
T Consensus 161 ~~n~i~~~F~~~~~~~l~k 179 (179)
T d1m7ba_ 161 SENSVRDIFHVATLACVNK 179 (179)
T ss_dssp BHHHHHHHHHHHHHHHHTC
T ss_pred CCcCHHHHHHHHHHHHhcC
Confidence 98 5999999999998764
|
| >d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-33b species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=5.9e-36 Score=193.25 Aligned_cols=157 Identities=31% Similarity=0.572 Sum_probs=137.5
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCcccccc-ccccccccccEEE
Q 030504 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGG-LRDGYYIHGQCAI 90 (176)
Q Consensus 12 ~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~-~~~~~~~~~~~~i 90 (176)
+.+||+++|.+|||||||+++|..+.+...+.++.+................+.+||++|.+.... .++.+++++|+++
T Consensus 1 r~~Kv~liG~~~vGKTsLl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i 80 (165)
T d1z06a1 1 RIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQHYYRNVHAVV 80 (165)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCSHHHHTTTHHHHHTTCCEEE
T ss_pred CEEEEEEECCCCcCHHHHHHHHHhCCCCCccCcccccccceeeeeeeccceEEEEEeccCchhhccccceeeecCCCceE
Confidence 368999999999999999999999999999899988888888888888999999999999877654 5677899999999
Q ss_pred EEEeCCChhhhhhHHHHHHHHhhhc--CCCCEEEEEeCCCCCccc-c-CHHHHHHHHHcCCeEEEeccCC---CCChHHH
Q 030504 91 IMFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNRQ-V-KAKQVTFHRKKNLQYYEISAKS---NYNFEKP 163 (176)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~liv~nK~Dl~~~~-~-~~~~~~~~~~~~~~~~~~S~~~---~~~v~~~ 163 (176)
+|||++++.+++.+..|+..+.+.. ++.|+++|+||+|+.... + .++...++++++++|++|||++ ++||+++
T Consensus 81 lv~d~~~~~s~~~~~~~~~~i~~~~~~~~~pi~lvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SAkt~~~~~~V~e~ 160 (165)
T d1z06a1 81 FVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRSAIQVPTDLAQKFADTHSMPLFETSAKNPNDNDHVEAI 160 (165)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHCCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCCEEECCSSSGGGGSCHHHH
T ss_pred EEEEeehhhhhhhhhhhhHHHHhhccCCCCeEEEEeccccchhccchhHHHHHHHHHHCCCEEEEEecccCCcCcCHHHH
Confidence 9999999999999999998887653 589999999999997643 3 3446789999999999999987 5599999
Q ss_pred HHHHH
Q 030504 164 FLYLA 168 (176)
Q Consensus 164 ~~~l~ 168 (176)
|.+|+
T Consensus 161 F~~lA 165 (165)
T d1z06a1 161 FMTLA 165 (165)
T ss_dssp HHHHC
T ss_pred HHHhC
Confidence 99874
|
| >d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL8A [TaxId: 9606]
Probab=100.00 E-value=1.7e-36 Score=195.60 Aligned_cols=155 Identities=23% Similarity=0.412 Sum_probs=130.8
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccccccccccEEEEE
Q 030504 13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIM 92 (176)
Q Consensus 13 ~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 92 (176)
++||+++|+++||||||+++|..+.+...+.||.|........ ..+.+.+||+||++.+...+..++..++++++|
T Consensus 2 e~ki~i~G~~~~GKTsLl~~l~~~~~~~~~~~T~~~~~~~~~~----~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v 77 (164)
T d1zd9a1 2 EMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRKITK----GNVTIKLWDIGGQPRFRSMWERYCRGVSAIVYM 77 (164)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEE----TTEEEEEEEECCSHHHHTTHHHHHTTCSEEEEE
T ss_pred eEEEEEECCCCCCHHHHHHHHHcCCCCCcccccceeeeeeeee----eeEEEEEeeccccccccccccccccccchhhcc
Confidence 6899999999999999999999999988888998876654433 567899999999999999999999999999999
Q ss_pred EeCCChhhhhhHHHHHHHHhhh--cCCCCEEEEEeCCCCCccccCHHHH-----HHHHHcCCeEEEeccCCCCChHHHHH
Q 030504 93 FDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQV-----TFHRKKNLQYYEISAKSNYNFEKPFL 165 (176)
Q Consensus 93 ~d~~~~~s~~~~~~~~~~~~~~--~~~~p~liv~nK~Dl~~~~~~~~~~-----~~~~~~~~~~~~~S~~~~~~v~~~~~ 165 (176)
||++++.+++....|+..+.+. .++.|+++|+||.|+.......+.. ..++..+++++++||++|.|++++|+
T Consensus 78 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~pi~lv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~e~Sa~~g~gv~e~~~ 157 (164)
T d1zd9a1 78 VDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGALDEKELIEKMNLSAIQDREICCYSISCKEKDNIDITLQ 157 (164)
T ss_dssp EETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHHH
T ss_pred cccccccccchhhhhhhhhhhhhcccCCcEEEEEeccccchhhhHHHHHHHHHHHHHHhCCCEEEEEeCcCCcCHHHHHH
Confidence 9999999999998887777543 3689999999999997643333222 22334567899999999999999999
Q ss_pred HHHHHH
Q 030504 166 YLARKL 171 (176)
Q Consensus 166 ~l~~~i 171 (176)
||++.+
T Consensus 158 ~l~~~~ 163 (164)
T d1zd9a1 158 WLIQHS 163 (164)
T ss_dssp HHHHTC
T ss_pred HHHHcc
Confidence 999864
|
| >d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL2 [TaxId: 10090]
Probab=100.00 E-value=4.1e-35 Score=189.25 Aligned_cols=158 Identities=17% Similarity=0.272 Sum_probs=126.7
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccccccccccEEEE
Q 030504 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAII 91 (176)
Q Consensus 12 ~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~ 91 (176)
+.+||+++|++|||||||+++|..+.+ ..+.+|.|...... ....+.+.+||++|++.++..+..+++.++++++
T Consensus 1 k~~ki~ivG~~~~GKTsLi~~l~~~~~-~~~~~t~~~~~~~~----~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~ 75 (165)
T d1ksha_ 1 RELRLLMLGLDNAGKTTILKKFNGEDV-DTISPTLGFNIKTL----EHRGFKLNIWDVGGQKSLRSYWRNYFESTDGLIW 75 (165)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHTTCCC-SSCCCCSSEEEEEE----EETTEEEEEEEECCSHHHHTTGGGGCTTCSEEEE
T ss_pred CcEEEEEECCCCCCHHHHHHHHcCCCC-CcccceEeeeeeec----cccccceeeeecCcchhhhhHHHhhhhhhhccee
Confidence 368999999999999999999776655 45677777554433 3366889999999999999999999999999999
Q ss_pred EEeCCChhhhhhHHHHHHHHhhh--cCCCCEEEEEeCCCCCccccCHHHHHH-----HHHcCCeEEEeccCCCCChHHHH
Q 030504 92 MFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVTF-----HRKKNLQYYEISAKSNYNFEKPF 164 (176)
Q Consensus 92 v~d~~~~~s~~~~~~~~~~~~~~--~~~~p~liv~nK~Dl~~~~~~~~~~~~-----~~~~~~~~~~~S~~~~~~v~~~~ 164 (176)
|||+++..++.....++...... ..+.|+++|+||+|+.+.....+.... .+...+.+++|||++|+|++++|
T Consensus 76 v~d~~d~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~e~~ 155 (165)
T d1ksha_ 76 VVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGALSCNAIQEALELDSIRSHHWRIQGCSAVTGEDLLPGI 155 (165)
T ss_dssp EEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHH
T ss_pred eeecccchhHHHHHHhhhhhhhhcccCCCceEEEEeccccccccCHHHHHHHHHhhhhhcCCCEEEEEECCCCCCHHHHH
Confidence 99999999998887666554432 368999999999999865444433322 22345789999999999999999
Q ss_pred HHHHHHHhcC
Q 030504 165 LYLARKLAGS 174 (176)
Q Consensus 165 ~~l~~~i~~~ 174 (176)
+||++++..+
T Consensus 156 ~~l~~~i~~r 165 (165)
T d1ksha_ 156 DWLLDDISSR 165 (165)
T ss_dssp HHHHHHHHTC
T ss_pred HHHHHHHHcC
Confidence 9999998754
|
| >d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL3 [TaxId: 10090]
Probab=100.00 E-value=1.5e-35 Score=193.24 Aligned_cols=159 Identities=17% Similarity=0.316 Sum_probs=127.1
Q ss_pred CCCCCeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCcccccccccccccccc
Q 030504 8 TVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQ 87 (176)
Q Consensus 8 ~~~~~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~ 87 (176)
..+.+++||+++|++|||||||++++..+.+.. ..++.|++.... ....+.+.+||++|++.++..+..++..+|
T Consensus 11 ~~~~~~~kI~vvG~~~vGKSsLi~~l~~~~~~~-~~~~~~~~~~~i----~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~ 85 (176)
T d1fzqa_ 11 SAPDQEVRILLLGLDNAGKTTLLKQLASEDISH-ITPTQGFNIKSV----QSQGFKLNVWDIGGQRKIRPYWRSYFENTD 85 (176)
T ss_dssp SCCSSCEEEEEEESTTSSHHHHHHHHCCSCCEE-EEEETTEEEEEE----EETTEEEEEEECSSCGGGHHHHHHHHTTCS
T ss_pred CCCCCEEEEEEECCCCCCHHHHHHHHhcCCCCc-ceeeeeeeEEEe----ccCCeeEeEeeccccccchhHHHHHhhccc
Confidence 345578999999999999999999988887753 344555544433 225678999999999999999999999999
Q ss_pred EEEEEEeCCChhhhhhHHHHHHHHhhhc--CCCCEEEEEeCCCCCccccCHHHH-----HHHHHcCCeEEEeccCCCCCh
Q 030504 88 CAIIMFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNRQVKAKQV-----TFHRKKNLQYYEISAKSNYNF 160 (176)
Q Consensus 88 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~liv~nK~Dl~~~~~~~~~~-----~~~~~~~~~~~~~S~~~~~~v 160 (176)
++++|||+++..++..+..|+..+.... .+.|+++++||+|+.+........ ..++...+.+++|||++|+|+
T Consensus 86 ~ii~v~d~~d~~s~~~~~~~~~~~~~~~~~~~~pillv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~tg~gv 165 (176)
T d1fzqa_ 86 ILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAAPASEIAEGLNLHTIRDRVWQIQSCSALTGEGV 165 (176)
T ss_dssp EEEEEEETTCGGGHHHHHHHHHHHTTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECCTTTCTTH
T ss_pred eeEEeeccccccchhhhhhhhhhhhhhhccCCCeEEEEEEeccccccccHHHHHHHHHHHHHHhcCCEEEEEeCCCCCCH
Confidence 9999999999999999988777665443 588999999999998654433322 223345678999999999999
Q ss_pred HHHHHHHHHHH
Q 030504 161 EKPFLYLARKL 171 (176)
Q Consensus 161 ~~~~~~l~~~i 171 (176)
+|+|+||++.+
T Consensus 166 ~e~~~~l~~~i 176 (176)
T d1fzqa_ 166 QDGMNWVCKNV 176 (176)
T ss_dssp HHHHHHHHHTC
T ss_pred HHHHHHHHhcC
Confidence 99999999864
|
| >d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Centaurin gamma 1, G domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=3.4e-34 Score=186.22 Aligned_cols=157 Identities=20% Similarity=0.362 Sum_probs=127.9
Q ss_pred CCCeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccccccccccEE
Q 030504 10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCA 89 (176)
Q Consensus 10 ~~~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~ 89 (176)
+.+.+||+++|.++||||||+++|+.+.+... .++.+..+ ...+.+++..+.+.+|||+|++.+ .+++.+|++
T Consensus 2 ~~p~~ki~vlG~~~vGKTsLi~~~~~~~f~~~-~~t~~~~~-~~~i~v~~~~~~l~i~Dt~g~~~~-----~~~~~ad~~ 74 (175)
T d2bmja1 2 SIPELRLGVLGDARSGKSSLIHRFLTGSYQVL-EKTESEQY-KKEMLVDGQTHLVLIREEAGAPDA-----KFSGWADAV 74 (175)
T ss_dssp CCCEEEEEEECCTTTTHHHHHHHHHHSCCCCC-CCSSCEEE-EEEEEETTEEEEEEEEECSSCCCH-----HHHHHCSEE
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHhCCCCCc-CCccceeE-EEEeecCceEEEEEEeeccccccc-----cccccccee
Confidence 45789999999999999999999999998653 45555444 455677889999999999998764 368899999
Q ss_pred EEEEeCCChhhhhhHHHHHHHHhhhc----CCCCEEEEEeCCCCCcc---ccCH-HHHHHHHH-cCCeEEEeccCCCCCh
Q 030504 90 IIMFDVTARLTYKNVPTWHRDLCRVC----ENIPIVLCGNKVDVKNR---QVKA-KQVTFHRK-KNLQYYEISAKSNYNF 160 (176)
Q Consensus 90 i~v~d~~~~~s~~~~~~~~~~~~~~~----~~~p~liv~nK~Dl~~~---~~~~-~~~~~~~~-~~~~~~~~S~~~~~~v 160 (176)
|+|||++++.+|+.+..|+..+.... ++.|+++|+||.|+... .... +...++.. .+++|++|||++|.|+
T Consensus 75 ilVfd~~~~~Sf~~~~~~~~~i~~~~~~~~~~~pi~lV~~k~d~d~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~~~v 154 (175)
T d2bmja1 75 IFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPRVVGDARARALCADMKRCSYYETCATYGLNV 154 (175)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHCC--CCCCEEEEEEECTTCCSSSCCCSCHHHHHHHHHTSTTEEEEEEBTTTTBTH
T ss_pred EEEeecccchhhhhhHHHHHHHHHHhhcccCCccEEEEeeecCcchhhhcchhHHHHHHHHHHhCCCeEEEeCCCCCcCH
Confidence 99999999999999999988876542 46799999999997542 2222 44566544 5789999999999999
Q ss_pred HHHHHHHHHHHhc
Q 030504 161 EKPFLYLARKLAG 173 (176)
Q Consensus 161 ~~~~~~l~~~i~~ 173 (176)
+++|..+++.+..
T Consensus 155 ~~~F~~l~~~i~~ 167 (175)
T d2bmja1 155 DRVFQEVAQKVVT 167 (175)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999998764
|
| >d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]
Probab=100.00 E-value=2.5e-35 Score=193.14 Aligned_cols=160 Identities=19% Similarity=0.291 Sum_probs=125.0
Q ss_pred CCCeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccccccccccEE
Q 030504 10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCA 89 (176)
Q Consensus 10 ~~~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~ 89 (176)
..+.+||+++|.+|||||||++++..+.+.. ..+|.+....... ...+.+.+||++|++.++..+..++..++++
T Consensus 14 ~~k~~KI~lvG~~~vGKTsLi~~l~~~~~~~-~~~t~~~~~~~~~----~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~i 88 (182)
T d1moza_ 14 SNKELRILILGLDGAGKTTILYRLQIGEVVT-TKPTIGFNVETLS----YKNLKLNVWDLGGQTSIRPYWRCYYADTAAV 88 (182)
T ss_dssp CSSCEEEEEEEETTSSHHHHHHHTCCSEEEE-ECSSTTCCEEEEE----ETTEEEEEEEEC----CCTTGGGTTTTEEEE
T ss_pred CCceEEEEEECCCCCCHHHHHHHHhcCCCCc-cccccceEEEEEe----eCCEEEEEEecccccccchhHHhhhccceeE
Confidence 3568999999999999999999987776643 4556654443332 3567899999999999999999999999999
Q ss_pred EEEEeCCChhhhhhHHHHHHHHhhh--cCCCCEEEEEeCCCCCccccCHHHHH-----HHHHcCCeEEEeccCCCCChHH
Q 030504 90 IIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVT-----FHRKKNLQYYEISAKSNYNFEK 162 (176)
Q Consensus 90 i~v~d~~~~~s~~~~~~~~~~~~~~--~~~~p~liv~nK~Dl~~~~~~~~~~~-----~~~~~~~~~~~~S~~~~~~v~~ 162 (176)
++|+|++++.++.....|+...... ..+.|+++++||+|+.+.....+... .+...++.+++|||++|+|+++
T Consensus 89 i~v~d~~d~~s~~~~~~~l~~~~~~~~~~~~piliv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~e~SA~~g~gv~e 168 (182)
T d1moza_ 89 IFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPGALSASEVSKELNLVELKDRSWSIVASSAIKGEGITE 168 (182)
T ss_dssp EEEEETTCTTTHHHHHHHHHHHTTSSTTSSCEEEEEEECTTSTTCCCHHHHHHHTTTTTCCSSCEEEEEEBGGGTBTHHH
T ss_pred EEEeeecccccchhHHHHHHHHHHhhccCCcceEEEEEeeccccccCHHHHHHHHHHHHHhhCCCEEEEEECCCCCCHHH
Confidence 9999999999999888877665543 25799999999999976544333222 2344567899999999999999
Q ss_pred HHHHHHHHHhcC
Q 030504 163 PFLYLARKLAGS 174 (176)
Q Consensus 163 ~~~~l~~~i~~~ 174 (176)
+|+||++.+.++
T Consensus 169 ~~~~l~~~i~~~ 180 (182)
T d1moza_ 169 GLDWLIDVIKEE 180 (182)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHc
Confidence 999999998764
|
| >d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF6 [TaxId: 9606]
Probab=100.00 E-value=1.6e-34 Score=187.76 Aligned_cols=156 Identities=21% Similarity=0.309 Sum_probs=125.1
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccccccccccEEE
Q 030504 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (176)
Q Consensus 11 ~~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 90 (176)
...+||+++|.++||||||++++..+.+... .+|.+...... ....+.+.+||+||++.++..+..+++.+++++
T Consensus 10 ~k~~kIvlvG~~~vGKTSli~rl~~~~~~~~-~~t~~~~~~~~----~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~ii 84 (173)
T d1e0sa_ 10 NKEMRILMLGLDAAGKTTILYKLKLGQSVTT-IPTVGFNVETV----TYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLI 84 (173)
T ss_dssp TCCEEEEEEEETTSSHHHHHHHTTCCCCEEE-EEETTEEEEEE----EETTEEEEEEEESCCGGGHHHHGGGTTTCCEEE
T ss_pred CCeEEEEEECCCCCCHHHHHHHHhcCCCCCc-cceeeeeEEEe----eccceeeEEecCCCcchhhhHHHhhhcccceEE
Confidence 4579999999999999999999887776443 44555443332 335678999999999999999999999999999
Q ss_pred EEEeCCChhhhhhHHHHHHHHhhh--cCCCCEEEEEeCCCCCccccCHHHH-----HHHHHcCCeEEEeccCCCCChHHH
Q 030504 91 IMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQV-----TFHRKKNLQYYEISAKSNYNFEKP 163 (176)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~--~~~~p~liv~nK~Dl~~~~~~~~~~-----~~~~~~~~~~~~~S~~~~~~v~~~ 163 (176)
+|+|+++..++..+..|+....+. ..+.|+++++||+|+.+.....+.. ..+...++.+++|||++|+||+|+
T Consensus 85 ~v~D~s~~~~~~~~~~~l~~~~~~~~~~~~piiiv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~e~SA~tg~gv~e~ 164 (173)
T d1e0sa_ 85 FVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEG 164 (173)
T ss_dssp EEEETTCGGGHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECBTTTTBTHHHH
T ss_pred EEEecccchhHHHHHHHHHHHhhhcccccceeeeeeecccccccccHHHHHHHHHHHHHHhCCCEEEEeeCCCCcCHHHH
Confidence 999999999999998877666543 3689999999999997644333322 223345678999999999999999
Q ss_pred HHHHHHHH
Q 030504 164 FLYLARKL 171 (176)
Q Consensus 164 ~~~l~~~i 171 (176)
|+||.+.+
T Consensus 165 ~~~l~~~~ 172 (173)
T d1e0sa_ 165 LTWLTSNY 172 (173)
T ss_dssp HHHHHHHC
T ss_pred HHHHHHhc
Confidence 99998865
|
| >d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF1 [TaxId: 9606]
Probab=99.98 E-value=5.4e-32 Score=173.47 Aligned_cols=153 Identities=21% Similarity=0.235 Sum_probs=124.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccccccccccEEEEEE
Q 030504 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMF 93 (176)
Q Consensus 14 ~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 93 (176)
+||+++|++|||||||++++..+++...+..... .....+...+.+.+||++|.+.+...+..++..++++++++
T Consensus 1 ikivlvG~~~vGKSsLi~~l~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~~~ 75 (160)
T d1r8sa_ 1 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGF-----NVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 75 (160)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHCSSCCCCCSSC-----CEEEEECSSCEEEEEECCCCGGGHHHHHHHTTTCSEEEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCccccceee-----EEEEEeeeeEEEEEecCCCcccchhhhhhhhccceeEEEEE
Confidence 5899999999999999999998887655443322 22334456788999999999999999999999999999999
Q ss_pred eCCChhhhhhHHHHHHHHhhh--cCCCCEEEEEeCCCCCccccCHHHH-----HHHHHcCCeEEEeccCCCCChHHHHHH
Q 030504 94 DVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQV-----TFHRKKNLQYYEISAKSNYNFEKPFLY 166 (176)
Q Consensus 94 d~~~~~s~~~~~~~~~~~~~~--~~~~p~liv~nK~Dl~~~~~~~~~~-----~~~~~~~~~~~~~S~~~~~~v~~~~~~ 166 (176)
|..++.++..+..|+..+... ....|+++++||.|+.+.....+.. .+++..++++++|||++|+|++++|+|
T Consensus 76 d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~k~d~~~~~~~~~i~~~~~~~~~~~~~~~~~~~SAktg~gi~e~~~~ 155 (160)
T d1r8sa_ 76 DSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDW 155 (160)
T ss_dssp ETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCSSCCEEEEECBTTTTBTHHHHHHH
T ss_pred EecChHHHHHHHHHHHHHHHhhcccCceEEEEeecccccccccHHHHHHHHHHHHHhhCCCEEEEeECCCCCCHHHHHHH
Confidence 999999999888777666543 2578999999999998755433322 344556789999999999999999999
Q ss_pred HHHHH
Q 030504 167 LARKL 171 (176)
Q Consensus 167 l~~~i 171 (176)
|++++
T Consensus 156 l~~~l 160 (160)
T d1r8sa_ 156 LSNQL 160 (160)
T ss_dssp HHHHC
T ss_pred HHhcC
Confidence 99874
|
| >d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL5A [TaxId: 9606]
Probab=99.97 E-value=5.5e-30 Score=166.69 Aligned_cols=157 Identities=23% Similarity=0.329 Sum_probs=118.5
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccccccccccEEE
Q 030504 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (176)
Q Consensus 11 ~~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 90 (176)
.+.+||+++|.+|||||||++++..+.+... .++.+...... ......+.+||+++.+.....+..++..+++++
T Consensus 13 ~k~~kI~vvG~~~~GKSsLi~rl~~~~~~~~-~~~~~~~~~~~----~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~i 87 (177)
T d1zj6a1 13 HQEHKVIIVGLDNAGKTTILYQFSMNEVVHT-SPTIGSNVEEI----VINNTRFLMWDIGGQESLRSSWNTYYTNTEFVI 87 (177)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHHTTSCEEE-ECCSCSSCEEE----EETTEEEEEEECCC----CGGGHHHHTTCCEEE
T ss_pred CCeEEEEEECCCCCCHHHHHHHHhcCCCCcc-ccccceeEEEE----eecceEEEEeccccccccccchhhhhccceeee
Confidence 4679999999999999999999888776533 33333222222 224578899999999999999999999999999
Q ss_pred EEEeCCChhhhhhHHHHHHHHhhh--cCCCCEEEEEeCCCCCccccCHHHHHH-----HHHcCCeEEEeccCCCCChHHH
Q 030504 91 IMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVTF-----HRKKNLQYYEISAKSNYNFEKP 163 (176)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~--~~~~p~liv~nK~Dl~~~~~~~~~~~~-----~~~~~~~~~~~S~~~~~~v~~~ 163 (176)
+++|.++..++.....+....... ..+.|+++|+||+|+.......+.... ++..++++++|||++|+|++++
T Consensus 88 ~v~d~~d~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~tg~Gi~e~ 167 (177)
T d1zj6a1 88 VVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQG 167 (177)
T ss_dssp EEEETTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTGGGCCSSCEEEEECBTTTTBTHHHH
T ss_pred eecccccccchhhhhhhhhhhhhcccccceEEEEEEEcccccccCcHHHHHHHHHHHhhHhcCCEEEEEeCCCCCCHHHH
Confidence 999999999888776655544432 368999999999999765543333322 2335678999999999999999
Q ss_pred HHHHHHHHh
Q 030504 164 FLYLARKLA 172 (176)
Q Consensus 164 ~~~l~~~i~ 172 (176)
|+||++++.
T Consensus 168 ~~~L~~~lk 176 (177)
T d1zj6a1 168 LEWMMSRLK 176 (177)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHHHhC
Confidence 999998863
|
| >d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL1 [TaxId: 9606]
Probab=99.96 E-value=1.5e-28 Score=158.51 Aligned_cols=159 Identities=21% Similarity=0.339 Sum_probs=126.1
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccccccccccEEEE
Q 030504 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAII 91 (176)
Q Consensus 12 ~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~ 91 (176)
+++||+++|.+|||||||++++..+.+... .++.+...... ....+.+.+||.+|.+.....+...+...+++++
T Consensus 4 ke~kI~ivG~~~vGKSSLi~~~~~~~~~~~-~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (169)
T d1upta_ 4 REMRILILGLDGAGKTTILYRLQVGEVVTT-IPTIGFNVETV----TYKNLKFQVWDLGGLTSIRPYWRCYYSNTDAVIY 78 (169)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHSSCCCC-CCCSSEEEEEE----EETTEEEEEEEECCCGGGGGGGGGGCTTCSEEEE
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCCcce-ecccceeeeee----ccCceEEEEeeccccccccccchhhhhhhhhhhh
Confidence 469999999999999999999999887653 44554333322 2356788999999999999999999999999999
Q ss_pred EEeCCChhhhhhHHHHHHHHhhh--cCCCCEEEEEeCCCCCccccCHHHH-----HHHHHcCCeEEEeccCCCCChHHHH
Q 030504 92 MFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQV-----TFHRKKNLQYYEISAKSNYNFEKPF 164 (176)
Q Consensus 92 v~d~~~~~s~~~~~~~~~~~~~~--~~~~p~liv~nK~Dl~~~~~~~~~~-----~~~~~~~~~~~~~S~~~~~~v~~~~ 164 (176)
++|+.+..++.....+....... ....|+++++||.|+.......+.. .++...++++++|||++|.|++++|
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iv~nk~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~SA~~g~gv~e~~ 158 (169)
T d1upta_ 79 VVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMTSSEMANSLGLPALKDRKWQIFKTSATKGTGLDEAM 158 (169)
T ss_dssp EEETTCCTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTGGGCTTSCEEEEECCTTTCTTHHHHH
T ss_pred hhhhhhcchhhhccchhhhhhhhhccccceEEEEEeeccccccccHHHHHHHHHHHHHhcCCCEEEEEeCCCCCCHHHHH
Confidence 99999888877777654444322 3688999999999998765443332 3344567899999999999999999
Q ss_pred HHHHHHHhcCC
Q 030504 165 LYLARKLAGST 175 (176)
Q Consensus 165 ~~l~~~i~~~~ 175 (176)
++|++.+.+++
T Consensus 159 ~~l~~~l~~k~ 169 (169)
T d1upta_ 159 EWLVETLKSRQ 169 (169)
T ss_dssp HHHHHHHHTCC
T ss_pred HHHHHHHHhCC
Confidence 99999998763
|
| >d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.96 E-value=3e-28 Score=156.42 Aligned_cols=150 Identities=19% Similarity=0.337 Sum_probs=118.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccccccccccEEEEEEe
Q 030504 15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFD 94 (176)
Q Consensus 15 ~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d 94 (176)
||+++|++|||||||++++..+.+. .+.|+.+.+... .......+.+||++|...+...+..++..++++++++|
T Consensus 2 KI~liG~~nvGKSSLln~l~~~~~~-~~~~t~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 76 (166)
T d2qtvb1 2 KLLFLGLDNAGKTTLLHMLKNDRLA-TLQPTWHPTSEE----LAIGNIKFTTFDLGGHIQARRLWKDYFPEVNGIVFLVD 76 (166)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSCCC-CCCCCCSCEEEE----ECCTTCCEEEEECCCSGGGGGGGGGGCTTCSEEEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCC-eeeceeeEeEEE----eccCCeeEEEEeeccchhhhhhHhhhhhheeeeeeecc
Confidence 8999999999999999999888765 346666544433 23355678899999999999999999999999999999
Q ss_pred CCChhhhhhHHHHHHHHhhhc--CCCCEEEEEeCCCCCccccCHHHHHHH------------HHcCCeEEEeccCCCCCh
Q 030504 95 VTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNRQVKAKQVTFH------------RKKNLQYYEISAKSNYNF 160 (176)
Q Consensus 95 ~~~~~s~~~~~~~~~~~~~~~--~~~p~liv~nK~Dl~~~~~~~~~~~~~------------~~~~~~~~~~S~~~~~~v 160 (176)
.++..++.....+........ .+.|+++++||.|+.......+..+.. ...++.+++|||++|+|+
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~k~d~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~SA~tg~Gv 156 (166)
T d2qtvb1 77 AADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPNAVSEAELRSALGLLNTTGSQRIEGQRPVEVFMCSVVMRNGY 156 (166)
T ss_dssp TTCGGGHHHHHHHHHHHHTCTTTTTCCEEEEEECTTSSSCCCHHHHHHHHTCSSCCC---CCSSCCEEEEEEBTTTTBSH
T ss_pred ccchhhhhhhhHHHHhhhhhhccCCceEEEEeccccccccCCHHHHHHHhhhhhhhHHHhhcccCCCEEEEeeCCCCCCH
Confidence 999988888777666554433 588999999999997654333332221 223467999999999999
Q ss_pred HHHHHHHHH
Q 030504 161 EKPFLYLAR 169 (176)
Q Consensus 161 ~~~~~~l~~ 169 (176)
+|+|+||.+
T Consensus 157 ~e~~~~l~~ 165 (166)
T d2qtvb1 157 LEAFQWLSQ 165 (166)
T ss_dssp HHHHHHHTT
T ss_pred HHHHHHHhC
Confidence 999999975
|
| >d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Thermus thermophilus [TaxId: 274]
Probab=99.96 E-value=5.6e-29 Score=162.08 Aligned_cols=159 Identities=18% Similarity=0.142 Sum_probs=109.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCcccccccc--------cccccc
Q 030504 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLR--------DGYYIH 85 (176)
Q Consensus 14 ~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~--------~~~~~~ 85 (176)
-.|+|+|.+|||||||+|++++.+... .....+.+..............+.+|||||........ ...+..
T Consensus 6 ~~I~lvG~~~~GKSSLin~l~~~~~~~-~~~~~~tt~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~~~~~~~~~ 84 (178)
T d1wf3a1 6 GFVAIVGKPNVGKSTLLNNLLGVKVAP-ISPRPQTTRKRLRGILTEGRRQIVFVDTPGLHKPMDALGEFMDQEVYEALAD 84 (178)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSCCSC-CCSSSCCCCSCEEEEEEETTEEEEEEECCCCCCCCSHHHHHHHHHHHHHTSS
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCcee-ecccCCcccccccceeeeeeeeeeecccccccccccccchhccccccccccc
Confidence 369999999999999999987665322 12233333333333333345678999999975543322 234678
Q ss_pred ccEEEEEEeCCChhhhhhHHHHHHHHhhhcCCCCEEEEEeCCCCCccccCHHHHHHHHHcC-CeEEEeccCCCCChHHHH
Q 030504 86 GQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKN-LQYYEISAKSNYNFEKPF 164 (176)
Q Consensus 86 ~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~~~~~~~~~~~~~~~~~-~~~~~~S~~~~~~v~~~~ 164 (176)
+|++++|+|++++..... ..|...+.....+.|+++|+||+|+..... .....+.+..+ ..++++||++|.|+++++
T Consensus 85 ad~il~v~D~~~~~~~~~-~~i~~~l~~~~~~~piilv~NK~Dl~~~~~-~~~~~~~~~~~~~~~~~iSA~~~~gi~~L~ 162 (178)
T d1wf3a1 85 VNAVVWVVDLRHPPTPED-ELVARALKPLVGKVPILLVGNKLDAAKYPE-EAMKAYHELLPEAEPRMLSALDERQVAELK 162 (178)
T ss_dssp CSEEEEEEETTSCCCHHH-HHHHHHHGGGTTTSCEEEEEECGGGCSSHH-HHHHHHHHTSTTSEEEECCTTCHHHHHHHH
T ss_pred ccceeeeechhhhhcccc-cchhhheeccccchhhhhhhcccccccCHH-HHHHHHHhhcccCceEEEecCCCCCHHHHH
Confidence 999999999987643322 344555555556899999999999965431 11223333333 578999999999999999
Q ss_pred HHHHHHHhcCC
Q 030504 165 LYLARKLAGST 175 (176)
Q Consensus 165 ~~l~~~i~~~~ 175 (176)
++|++.+.+.|
T Consensus 163 ~~i~~~lpe~p 173 (178)
T d1wf3a1 163 ADLLALMPEGP 173 (178)
T ss_dssp HHHHTTCCBCC
T ss_pred HHHHHhCCCCC
Confidence 99999887755
|
| >d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.95 E-value=6.1e-29 Score=164.57 Aligned_cols=157 Identities=17% Similarity=0.181 Sum_probs=121.0
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccccccccccEEEE
Q 030504 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAII 91 (176)
Q Consensus 12 ~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~ 91 (176)
+++||+++|..|||||||+++|..+.+. +.||.|+..... ....+.+.+||++|++.+...|..+++.++++++
T Consensus 1 ke~Kiv~lG~~~vGKTsll~r~~~~~~~--~~pTiG~~~~~~----~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~ 74 (200)
T d2bcjq2 1 RELKLLLLGTGESGKSTFIKQMRIIHGS--GVPTTGIIEYPF----DLQSVIFRMVDVGGQRSERRKWIHCFENVTSIMF 74 (200)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHHTSS--CCCCCSCEEEEE----ECSSCEEEEEECCCSTTGGGGGGGGCSSCSEEEE
T ss_pred CeeEEEEECCCCCCHHHHHHHHhCCCCC--CCceeeEEEEEE----eccceeeeeccccccccccccccccccccceeeE
Confidence 4799999999999999999999888874 578998765443 3466789999999999999999999999999999
Q ss_pred EEeCCChhh-----------hhhHHHHHHHHhhh-cCCCCEEEEEeCCCCCcccc------------------CHHHHHH
Q 030504 92 MFDVTARLT-----------YKNVPTWHRDLCRV-CENIPIVLCGNKVDVKNRQV------------------KAKQVTF 141 (176)
Q Consensus 92 v~d~~~~~s-----------~~~~~~~~~~~~~~-~~~~p~liv~nK~Dl~~~~~------------------~~~~~~~ 141 (176)
++|.++..+ ++....|...+... ..+.|+++++||+|+..... ......+
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~~~v~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (200)
T d2bcjq2 75 LVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREF 154 (200)
T ss_dssp EEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHHCGGGSSSEEEEEEECHHHHHHHTTTSCHHHHSTTCCSCSSCHHHHHHH
T ss_pred eeeccchhhhhhhhccccchHHHHHHHHHHHhhhhccCccEEEecchhhhhhhcccchHHHHhcccccCCchhHHHHHHH
Confidence 999987642 34455566666544 47899999999999753211 0111111
Q ss_pred ----HH------HcCCeEEEeccCCCCChHHHHHHHHHHHhcC
Q 030504 142 ----HR------KKNLQYYEISAKSNYNFEKPFLYLARKLAGS 174 (176)
Q Consensus 142 ----~~------~~~~~~~~~S~~~~~~v~~~~~~l~~~i~~~ 174 (176)
+. ...+.+++|||++|.|++++|+.+.+.|.++
T Consensus 155 i~~~f~~~~~~~~~~~~~~~tSAk~~~ni~~vF~~i~~~I~~~ 197 (200)
T d2bcjq2 155 ILKMFVDLNPDSDKIIYSHFTCATDTENIRFVFAAVKDTILQL 197 (200)
T ss_dssp HHHHHHTTCSCTTSCEEEEECCTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcccCCCceEEEEeEEEcCHhHHHHHHHHHHHHHHH
Confidence 11 1235688999999999999999998888753
|
| >d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.95 E-value=4e-29 Score=164.86 Aligned_cols=154 Identities=16% Similarity=0.144 Sum_probs=113.1
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccccccccccEEEE
Q 030504 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAII 91 (176)
Q Consensus 12 ~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~ 91 (176)
+++||+++|..|||||||++||..+.+++. |+.. ..+....+.+.+||++|++.+...+..+++.++++++
T Consensus 1 ~e~KivllG~~~vGKTsl~~r~~~~~~~t~-----~~~~----~~~~~~~~~~~i~D~~Gq~~~~~~~~~~~~~~~~~i~ 71 (195)
T d1svsa1 1 REVKLLLLGAGESGKSTIVKQMKIIHEAGT-----GIVE----THFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIF 71 (195)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHHHSCCC-----SEEE----EEEEETTEEEEEEEECCSGGGGGGGGGGCTTCSEEEE
T ss_pred CceEEEEECCCCCCHHHHHHHHhhCCCCCc-----cEEE----EEEEeeeeeeeeeccccccccccchhhcccCCceeee
Confidence 479999999999999999999987766543 3221 2233356789999999999999999999999999999
Q ss_pred EEeCCChhhhhh-----------HHHHHHHHhhh-cCCCCEEEEEeCCCCCcccc-----------------CHHHH---
Q 030504 92 MFDVTARLTYKN-----------VPTWHRDLCRV-CENIPIVLCGNKVDVKNRQV-----------------KAKQV--- 139 (176)
Q Consensus 92 v~d~~~~~s~~~-----------~~~~~~~~~~~-~~~~p~liv~nK~Dl~~~~~-----------------~~~~~--- 139 (176)
|+|+++..++.. ...|...+... ..+.|+++++||+|+..... ..+..
T Consensus 72 v~d~~~~~~~~~~~~~~~~~~e~~~~~~~i~~~~~~~~~~~~lv~Nk~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (195)
T d1svsa1 72 CVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYI 151 (195)
T ss_dssp EEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTCGGGTTSEEEEEEECHHHHHHHTTTSCGGGTCTTCCSCSSHHHHHHHH
T ss_pred EEeecccchHHHHhhhhHHHHHHHHHHHHHhcccccCCCCEEEEeccchhhhhhccchHHHHHhhhhcCcccHHHHHHHH
Confidence 999998876632 22333334333 36889999999999643110 01111
Q ss_pred --HHHH------HcCCeEEEeccCCCCChHHHHHHHHHHHhcC
Q 030504 140 --TFHR------KKNLQYYEISAKSNYNFEKPFLYLARKLAGS 174 (176)
Q Consensus 140 --~~~~------~~~~~~~~~S~~~~~~v~~~~~~l~~~i~~~ 174 (176)
.+.. ...+.+++|||+++.||+++|+.+.+.|.++
T Consensus 152 ~~~f~~~~~~~~~~~~~~~~tSA~~~~nv~~~F~~v~~~il~~ 194 (195)
T d1svsa1 152 QCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVIIKN 194 (195)
T ss_dssp HHHHHTTCSCTTTCCEEEEECCTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcccCCCcceeEEEEeECCHhHHHHHHHHHHHHHhc
Confidence 1111 1246688999999999999999998887654
|
| >d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=99.95 E-value=2.6e-27 Score=154.80 Aligned_cols=156 Identities=18% Similarity=0.257 Sum_probs=112.6
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccccccccccEEE
Q 030504 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (176)
Q Consensus 11 ~~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 90 (176)
.+..||+++|.+|||||||++++..+.+... .++.+.+.... .. ....+..||+.++..+...+..++...++++
T Consensus 11 ~k~~kI~lvG~~~vGKTsLl~~l~~~~~~~~-~~~~~~~~~~~--~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (186)
T d1f6ba_ 11 KKTGKLVFLGLDNAGKTTLLHMLKDDRLGQH-VPTLHPTSEEL--TI--AGMTFTTFDLGGHIQARRVWKNYLPAINGIV 85 (186)
T ss_dssp TCCEEEEEEEETTSSHHHHHHHHSCC-------CCCCCSCEEE--EE--TTEEEEEEEECC----CCGGGGGGGGCSEEE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCcce-ecccccceeEE--Ee--cccccccccccchhhhhhHHhhhhcccceee
Confidence 5679999999999999999999887776543 44444333333 22 3456789999999999999999999999999
Q ss_pred EEEeCCChhhhhhHHHHHHHHhh--hcCCCCEEEEEeCCCCCccccCHHHHHHHH-----------------HcCCeEEE
Q 030504 91 IMFDVTARLTYKNVPTWHRDLCR--VCENIPIVLCGNKVDVKNRQVKAKQVTFHR-----------------KKNLQYYE 151 (176)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~--~~~~~p~liv~nK~Dl~~~~~~~~~~~~~~-----------------~~~~~~~~ 151 (176)
+++|+++...+.....+...... ...+.|+++++||.|+.......+...... ..++.+++
T Consensus 86 ~~~d~~d~~~~~~~~~~~~~~~~~~~~~~~~~li~~~K~D~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (186)
T d1f6ba_ 86 FLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPEAISEERLREMFGLYGQTTGKGSVSLKELNARPLEVFM 165 (186)
T ss_dssp EEEETTCGGGHHHHHHHHHHHHTCGGGTTSCEEEEEECTTSTTCCCHHHHHHHHTCTTTCCCSSCCCTTTCCSCCEEEEE
T ss_pred eeeeccCccchHHHHHHHHHhhcccccCCCceEEEEeccCccccCCHHHHHHHHhhcccchhhhhhhHHHhhcCCCEEEE
Confidence 99999999888777654444433 236899999999999977544433333321 12356999
Q ss_pred eccCCCCChHHHHHHHHHHH
Q 030504 152 ISAKSNYNFEKPFLYLARKL 171 (176)
Q Consensus 152 ~S~~~~~~v~~~~~~l~~~i 171 (176)
|||++|+|++|+|+||++++
T Consensus 166 ~SA~tg~Gi~e~~~~l~~~i 185 (186)
T d1f6ba_ 166 CSVLKRQGYGEGFRWMAQYI 185 (186)
T ss_dssp CBTTTTBSHHHHHHHHHTTC
T ss_pred EeCCCCCCHHHHHHHHHHhh
Confidence 99999999999999999765
|
| >d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Thermus thermophilus [TaxId: 274]
Probab=99.95 E-value=3.7e-27 Score=153.63 Aligned_cols=159 Identities=14% Similarity=0.072 Sum_probs=108.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccc----cc---ccccccccc
Q 030504 15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFG----GL---RDGYYIHGQ 87 (176)
Q Consensus 15 ~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~----~~---~~~~~~~~~ 87 (176)
+|+++|.+|||||||+|++.+........+.. ................+.+|||||..... .. ....+..++
T Consensus 3 ~VaivG~~nvGKSTLin~L~~~~~~~~~~~~~-t~~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~~l~~~~~~~ 81 (180)
T d1udxa2 3 DVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFT-TLSPNLGVVEVSEEERFTLADIPGIIEGASEGKGLGLEFLRHIARTR 81 (180)
T ss_dssp SEEEECCGGGCHHHHHHHHCSSCCEECCCTTC-SSCCEEEEEECSSSCEEEEEECCCCCCCGGGSCCSCHHHHHHHTSSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCceeccCCC-ceeeeeceeeecCCCeEEEcCCCeeecCchHHHHHHHHHHHHHHhhh
Confidence 48999999999999999976544322111111 12222223333445568899999954321 11 223356789
Q ss_pred EEEEEEeCCChh--hhhhHHHHHHHHhhhcCCCCEEEEEeCCCCCccccCHHHHHHHHHcCCeEEEeccCCCCChHHHHH
Q 030504 88 CAIIMFDVTARL--TYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFL 165 (176)
Q Consensus 88 ~~i~v~d~~~~~--s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~ 165 (176)
++++++|..... .......++........++|+++|+||+|+..+....+..+.+...+.+++.+||++|+|++++++
T Consensus 82 ~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~D~~~~~~~~~~~~~~~~~~~~~~~iSA~tg~gid~L~~ 161 (180)
T d1udxa2 82 VLLYVLDAADEPLKTLETLRKEVGAYDPALLRRPSLVALNKVDLLEEEAVKALADALAREGLAVLPVSALTGAGLPALKE 161 (180)
T ss_dssp EEEEEEETTSCHHHHHHHHHHHHHHHCHHHHHSCEEEEEECCTTSCHHHHHHHHHHHHTTTSCEEECCTTTCTTHHHHHH
T ss_pred hhhhhcccccccccchhhhhhhhhccccccchhhhhhhhhhhhhhhHHHHHHHHHHHHhcCCeEEEEEcCCCCCHHHHHH
Confidence 999999987542 333444444443333347899999999999876655566667777899999999999999999999
Q ss_pred HHHHHHhcC
Q 030504 166 YLARKLAGS 174 (176)
Q Consensus 166 ~l~~~i~~~ 174 (176)
.|.+.+...
T Consensus 162 ~i~~~l~~~ 170 (180)
T d1udxa2 162 ALHALVRST 170 (180)
T ss_dssp HHHHHHHTS
T ss_pred HHHHHHhhc
Confidence 998887653
|
| >d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable tRNA modification GTPase TrmE (MnmE), G domain species: Escherichia coli [TaxId: 562]
Probab=99.95 E-value=1.7e-28 Score=157.29 Aligned_cols=152 Identities=17% Similarity=0.190 Sum_probs=110.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccc--------ccccccc
Q 030504 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGL--------RDGYYIH 85 (176)
Q Consensus 14 ~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~--------~~~~~~~ 85 (176)
+||+++|.+|||||||+|+++..+... .....+.+..............+.++|++|....... ...++..
T Consensus 2 ~kI~lvG~~nvGKSsLin~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~~~ 80 (161)
T d2gj8a1 2 MKVVIAGRPNAGKSSLLNALAGREAAI-VTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWQEIEQ 80 (161)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTSCCSC-CCSSTTCCCSCEEEEEEETTEEEEEEECCCCSCCSSHHHHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceE-eecccccccceEeeeeeccCceeeeccccccccccccchhHHHHHHHHHHHh
Confidence 799999999999999999987654321 1222233333333333345567889999996543221 2344678
Q ss_pred ccEEEEEEeCCChhhhhhHHHHHHHHhhhcCCCCEEEEEeCCCCCccccCHHHHHHHHHcCCeEEEeccCCCCChHHHHH
Q 030504 86 GQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFL 165 (176)
Q Consensus 86 ~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~ 165 (176)
+|++++++|..+..+++....|...+.....+.|+++|+||+|+....... .+..+.+++++||++|.|++++++
T Consensus 81 ~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~iilv~NK~Dl~~~~~~~-----~~~~~~~~~~iSAk~~~gi~~L~~ 155 (161)
T d2gj8a1 81 ADRVLFMVDGTTTDAVDPAEIWPEFIARLPAKLPITVVRNKADITGETLGM-----SEVNGHALIRLSARTGEGVDVLRN 155 (161)
T ss_dssp CSEEEEEEETTTCCCCSHHHHCHHHHHHSCTTCCEEEEEECHHHHCCCCEE-----EEETTEEEEECCTTTCTTHHHHHH
T ss_pred ccccceeeccccccchhhhhhhhhhhhhcccccceeeccchhhhhhhHHHH-----HHhCCCcEEEEECCCCCCHHHHHH
Confidence 999999999999888777777666666655689999999999986543211 123467899999999999999999
Q ss_pred HHHHHH
Q 030504 166 YLARKL 171 (176)
Q Consensus 166 ~l~~~i 171 (176)
+|++++
T Consensus 156 ~l~~~l 161 (161)
T d2gj8a1 156 HLKQSM 161 (161)
T ss_dssp HHHHHC
T ss_pred HHHhhC
Confidence 999864
|
| >d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=99.94 E-value=2.9e-27 Score=152.96 Aligned_cols=157 Identities=17% Similarity=0.146 Sum_probs=104.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCcccc---------cccccccccc
Q 030504 15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKF---------GGLRDGYYIH 85 (176)
Q Consensus 15 ~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~---------~~~~~~~~~~ 85 (176)
+|+++|++|||||||++++++... .......+.+..............+.+||++|.... .......+..
T Consensus 2 ~V~liG~~n~GKSsLi~~L~~~~~-~~~~~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~ 80 (171)
T d1mkya1 2 TVLIVGRPNVGKSTLFNKLVKKKK-AIVEDEEGVTRDPVQDTVEWYGKTFKLVDTCGVFDNPQDIISQKMKEVTLNMIRE 80 (171)
T ss_dssp EEEEECCTTSSHHHHHHHHHC---------------CCSEEEEEETTEEEEEEECTTTTSSGGGCCCHHHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhCCCc-ceecccCceeeccccccccccccccccccccceeeeecccccccccccccccccc
Confidence 689999999999999999765433 222334445555555555556677899999994221 1122334568
Q ss_pred ccEEEEEEeCCChhhhhhHHHHHHHHhhhcCCCCEEEEEeCCCCCccccCHHHHHHHHHcCCeEEEeccCCCCChHHHHH
Q 030504 86 GQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFL 165 (176)
Q Consensus 86 ~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~ 165 (176)
+|+++++.+.+....... ..++..+... +.|+++|+||+|+.++.......++.+.....++++||++|.|++++++
T Consensus 81 ad~i~~~~~~~~~~~~~~-~~~~~~l~~~--~~pviiv~NK~Dl~~~~~~~~~~~~~~~~~~~~i~iSAk~g~gid~L~~ 157 (171)
T d1mkya1 81 ADLVLFVVDGKRGITKED-ESLADFLRKS--TVDTILVANKAENLREFEREVKPELYSLGFGEPIPVSAEHNINLDTMLE 157 (171)
T ss_dssp CSEEEEEEETTTCCCHHH-HHHHHHHHHH--TCCEEEEEESCCSHHHHHHHTHHHHGGGSSCSCEECBTTTTBSHHHHHH
T ss_pred CcEEEEeecccccccccc-cccccccccc--cccccccchhhhhhhhhhhHHHHHHHhcCCCCeEEEecCCCCCHHHHHH
Confidence 899999999876654332 3344445544 8899999999999754432223344444456789999999999999999
Q ss_pred HHHHHHhcCC
Q 030504 166 YLARKLAGST 175 (176)
Q Consensus 166 ~l~~~i~~~~ 175 (176)
+|++.+.++.
T Consensus 158 ~i~~~l~e~~ 167 (171)
T d1mkya1 158 TIIKKLEEKG 167 (171)
T ss_dssp HHHHHHHHTT
T ss_pred HHHHhCCCCC
Confidence 9999988764
|
| >d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor SelB, N-terminal domain species: Methanococcus maripaludis [TaxId: 39152]
Probab=99.94 E-value=4.4e-27 Score=153.08 Aligned_cols=163 Identities=18% Similarity=0.119 Sum_probs=109.5
Q ss_pred CCCCeeEEEEEcCCCCcHHHHHHHHhcCCCCCcc-----ccceeEEEeEEEEEecCcEEEEEEEeCCCcccccccccccc
Q 030504 9 VDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKY-----EPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYY 83 (176)
Q Consensus 9 ~~~~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~ 83 (176)
++.+.+||+++|.+++|||||+|++++....... ....|.+..............+.++|++|+..+.......+
T Consensus 1 ~~~k~inIaiiG~~naGKSTL~n~L~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~l 80 (179)
T d1wb1a4 1 MDFKNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLENYRITLVDAPGHADLIRAVVSAA 80 (179)
T ss_dssp CCCEEEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEETTEEEEECCCSSHHHHHHHHHHHT
T ss_pred CCCCCEEEEEEeCCCCcHHHHHHHHHHhcCceecccccceeeeeeeccccccccccCCccccccccccccccccchhhhh
Confidence 3567899999999999999999998743211111 11122222222222233446788999999998888777888
Q ss_pred ccccEEEEEEeCCChhhhhhHHHHHHHHhhhcCCCCEEEEEeCCCCCccccCHHHH----HHHHH----cCCeEEEeccC
Q 030504 84 IHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQV----TFHRK----KNLQYYEISAK 155 (176)
Q Consensus 84 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~~~~~~~~~~----~~~~~----~~~~~~~~S~~ 155 (176)
..+|++++|+|++++...+....+ ..+... +.|+++|+||.|+.+........ .+.+. ...+++++||+
T Consensus 81 ~~~d~~ilv~d~~~g~~~~~~~~~-~~~~~~--~~p~iiv~NKiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~iSA~ 157 (179)
T d1wb1a4 81 DIIDLALIVVDAKEGPKTQTGEHM-LILDHF--NIPIIVVITKSDNAGTEEIKRTEMIMKSILQSTHNLKNSSIIPISAK 157 (179)
T ss_dssp TSCCEEEEEEETTTCSCHHHHHHH-HHHHHT--TCCBCEEEECTTSSCHHHHHHHHHHHHHHHHHSSSGGGCCEEECCTT
T ss_pred hhccccccccccccccchhhhhhh-hhhhhc--CCcceeccccccccCHHHHHHHHHHHHHHHHHhhcCCCCeEEEEEcc
Confidence 899999999999987544333222 333333 89999999999998654322211 22221 23589999999
Q ss_pred CCCChHHHHHHHHHHHhcC
Q 030504 156 SNYNFEKPFLYLARKLAGS 174 (176)
Q Consensus 156 ~~~~v~~~~~~l~~~i~~~ 174 (176)
+|+|++++++.|++.+.+.
T Consensus 158 ~g~gi~eL~~~I~~~l~~~ 176 (179)
T d1wb1a4 158 TGFGVDELKNLIITTLNNA 176 (179)
T ss_dssp TCTTHHHHHHHHHHHHHHS
T ss_pred CCcCHHHHHHHHHhcCCcc
Confidence 9999999999999988654
|
| >d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.94 E-value=5.3e-27 Score=155.23 Aligned_cols=155 Identities=17% Similarity=0.192 Sum_probs=108.3
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccccccccccEEEE
Q 030504 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAII 91 (176)
Q Consensus 12 ~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~ 91 (176)
+.+||+++|.+|||||||+++| .+...+.||.|+..... +.+...+.+||++|++.+...+..+++.++++++
T Consensus 1 r~iKivllG~~~vGKTsll~r~---~f~~~~~pTiG~~~~~~----~~~~~~~~~~D~~gq~~~~~~~~~~~~~~~~~~~ 73 (200)
T d1zcba2 1 RLVKILLLGAGESGKSTFLKQM---RIIHGQDPTKGIHEYDF----EIKNVPFKMVDVGGQRSERKRWFECFDSVTSILF 73 (200)
T ss_dssp CCEEEEEECSTTSSHHHHHHHH---HHHHSCCCCSSEEEEEE----EETTEEEEEEEECC-------CTTSCTTCCEEEE
T ss_pred CeEEEEEECCCCCCHHHHHHHH---hcCCCCCCeeeeEEEEE----eeeeeeeeeecccceeeecccccccccccceeEE
Confidence 3589999999999999999998 35566788998655443 3367789999999999999999999999999999
Q ss_pred EEeCCChhhh----------hhHHHHHHHHhhh--cCCCCEEEEEeCCCCCcccc------------------CHHHH--
Q 030504 92 MFDVTARLTY----------KNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQV------------------KAKQV-- 139 (176)
Q Consensus 92 v~d~~~~~s~----------~~~~~~~~~~~~~--~~~~p~liv~nK~Dl~~~~~------------------~~~~~-- 139 (176)
++|.++..++ +....++..+... ..+.|+++++||+|+..+.. .....
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~ 153 (200)
T d1zcba2 74 LVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVSIILFLNKTDLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKF 153 (200)
T ss_dssp EEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEEEEEECHHHHHHHTTTCCGGGTCTTCCSCTTCHHHHHHH
T ss_pred EEEcCCcceeeeecccchhhhHHHHHHHHHhhChhhcCceEEEEeccchhhhhhccccHHHHhCccccCCcchHHHHHHH
Confidence 9999976433 2333344443322 36899999999999753210 01111
Q ss_pred --HHHHH-------cCCeEEEeccCCCCChHHHHHHHHHHHhc
Q 030504 140 --TFHRK-------KNLQYYEISAKSNYNFEKPFLYLARKLAG 173 (176)
Q Consensus 140 --~~~~~-------~~~~~~~~S~~~~~~v~~~~~~l~~~i~~ 173 (176)
+.++. ..+.+++|||+++.||+++|+.+.+.|.+
T Consensus 154 ~~~~f~~~~~~~~~~~iy~~~TsA~d~~ni~~vf~~v~d~i~~ 196 (200)
T d1zcba2 154 LVECFRGKRRDQQQRPLYHHFTTAINTENIRLVFRDVKDTILH 196 (200)
T ss_dssp HHHHHHTTCSSCC--CCEEEECCTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccCCCCCceEEEEeeeeCcHHHHHHHHHHHHHHHH
Confidence 22221 23567789999999999999998887764
|
| >d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: TrmE GTPase domain species: Thermotoga maritima [TaxId: 2336]
Probab=99.92 E-value=1.3e-25 Score=143.64 Aligned_cols=150 Identities=20% Similarity=0.158 Sum_probs=101.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCcccccc---------ccccccc
Q 030504 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGG---------LRDGYYI 84 (176)
Q Consensus 14 ~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~---------~~~~~~~ 84 (176)
+||+++|.+|||||||+|++.+.... ......+.+..............+.+|||||...... .....+.
T Consensus 1 ikI~liG~~n~GKSSLin~l~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~~~~~ 79 (160)
T d1xzpa2 1 LRMVIVGKPNVGKSTLLNRLLNEDRA-IVTDIPGTTRDVISEEIVIRGILFRIVDTAGVRSETNDLVERLGIERTLQEIE 79 (160)
T ss_dssp EEEEEECCHHHHTCHHHHHHHHHTBC-CCCCSSCCSSCSCCEEEEETTEEEEEEESSCCCSSCCTTCCCCCHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCce-eeeccccccccceeEEEEeCCeeEEeccccccccCCccHHHHHHHHHHHHHHH
Confidence 68999999999999999997654322 2223333333333333344556788999999532111 1122356
Q ss_pred cccEEEEEEeCCChhhhhhHHHHHHHHhhhcCCCCEEEEEeCCCCCccccCHHHHHHHHHcCCeEEEeccCCCCChHHHH
Q 030504 85 HGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPF 164 (176)
Q Consensus 85 ~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~ 164 (176)
.+|++++|+|++++...+... +.......++++++||.|+.+.....+.. .......+++++||++|+|+++++
T Consensus 80 ~ad~ii~v~d~~~~~~~~~~~-----~~~~~~~~~~i~~~~k~d~~~~~~~~~~~-~~~~~~~~~~~vSA~~g~gi~~L~ 153 (160)
T d1xzpa2 80 KADIVLFVLDASSPLDEEDRK-----ILERIKNKRYLVVINKVDVVEKINEEEIK-NKLGTDRHMVKISALKGEGLEKLE 153 (160)
T ss_dssp HCSEEEEEEETTSCCCHHHHH-----HHHHHTTSSEEEEEEECSSCCCCCHHHHH-HHHTCSTTEEEEEGGGTCCHHHHH
T ss_pred hCCEEEEEEeCCCCcchhhhh-----hhhhcccccceeeeeeccccchhhhHHHH-HHhCCCCcEEEEECCCCCCHHHHH
Confidence 799999999999876544332 22222478999999999998755433322 222345789999999999999999
Q ss_pred HHHHHH
Q 030504 165 LYLARK 170 (176)
Q Consensus 165 ~~l~~~ 170 (176)
++|.++
T Consensus 154 ~~I~ke 159 (160)
T d1xzpa2 154 ESIYRE 159 (160)
T ss_dssp HHHHHH
T ss_pred HHHHhc
Confidence 998764
|
| >d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.92 E-value=2.9e-24 Score=142.70 Aligned_cols=154 Identities=19% Similarity=0.218 Sum_probs=105.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccc-cccccccccccEEEEEE
Q 030504 15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFG-GLRDGYYIHGQCAIIMF 93 (176)
Q Consensus 15 ~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~-~~~~~~~~~~~~~i~v~ 93 (176)
+|+++|++|||||||+++|+.+.+... .++.+.+...... .....+.+.+||++|++.++ ..+..++..++++++|+
T Consensus 2 ~V~ivG~~~~GKTsLl~~l~~~~~~~~-~~t~~~~~~~~~~-~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~i~v~ 79 (207)
T d2fh5b1 2 AVLFVGLCDSGKTLLFVRLLTGQYRDT-QTSITDSSAIYKV-NNNRGNSLTLIDLPGHESLRFQLLDRFKSSARAVVFVV 79 (207)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSCCCCB-CCCCSCEEEEEEC-SSTTCCEEEEEECCCCHHHHHHHHHHHGGGEEEEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCcc-cCCeeEEEEEEEE-eeeeeeeeeeeeccccccccchhhhhhhhhccccceEE
Confidence 699999999999999999999887665 3555555444332 24567789999999998875 56778889999999999
Q ss_pred eCCChhhh-hhHHHHHHHH-hhh---cCCCCEEEEEeCCCCCccccCHHHHHHH--------H-----------------
Q 030504 94 DVTARLTY-KNVPTWHRDL-CRV---CENIPIVLCGNKVDVKNRQVKAKQVTFH--------R----------------- 143 (176)
Q Consensus 94 d~~~~~s~-~~~~~~~~~~-~~~---~~~~p~liv~nK~Dl~~~~~~~~~~~~~--------~----------------- 143 (176)
|+++..++ .....++..+ ... ...+|+++++||+|+.+.....+..+.. .
T Consensus 80 D~~d~~~~~~~~~~~l~~~l~~~~~~~~~~pilvv~NK~Dl~~a~~~~~i~~~l~~e~~~~~~~~~~~~~~~~~~~~~~~ 159 (207)
T d2fh5b1 80 DSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAKSAKLIQQQLEKELNTLRVTRSAAPSTLDSSSTAPA 159 (207)
T ss_dssp ETTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHHHCC------------CC
T ss_pred EcccccccHHHHHHHHHHHHHhHHHhhcCCcEEEEEECcccCCCCCHHHHHHHHHHHhhhhhhccccccceeehhhhhhh
Confidence 99987653 3443333333 222 2468999999999998644332221110 0
Q ss_pred --------------HcCCeEEEeccCCCCC------hHHHHHHHHHH
Q 030504 144 --------------KKNLQYYEISAKSNYN------FEKPFLYLARK 170 (176)
Q Consensus 144 --------------~~~~~~~~~S~~~~~~------v~~~~~~l~~~ 170 (176)
.....++++|++++.+ ++++-+||.+.
T Consensus 160 ~~~~~~~~~~~~~~~~~v~~~~~S~~~~~~~~~~~~i~~~~~wl~~~ 206 (207)
T d2fh5b1 160 QLGKKGKEFEFSQLPLKVEFLECSAKGGRGDTGSADIQDLEKWLAKI 206 (207)
T ss_dssp CSSCTTSCCCGGGSSSCEEEEECBCC-------CCBCHHHHHHHHHH
T ss_pred hhcccchhhhHHhccCCcEEEEeeecCCCcccccccHHHHHHHHHHh
Confidence 0113588999999987 88888888753
|
| >d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.91 E-value=1.5e-24 Score=145.38 Aligned_cols=153 Identities=17% Similarity=0.171 Sum_probs=110.5
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccccccccccEEEEE
Q 030504 13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIM 92 (176)
Q Consensus 13 ~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 92 (176)
.+||+++|..|||||||++++..+.+ .||.|+....... +.+.+.+||++|++.++..|..++.+++++++|
T Consensus 6 ~~KilllG~~~vGKTsll~~~~~~~~----~pTiG~~~~~~~~----~~~~~~~~D~~Gq~~~r~~w~~~~~~~~~ii~v 77 (221)
T d1azta2 6 THRLLLLGAGESGKSTIVKQMRILHV----VLTSGIFETKFQV----DKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFV 77 (221)
T ss_dssp SEEEEEECSTTSSHHHHHHHHHHHHC----CCCCSCEEEEEEE----TTEEEEEEECCCSTTTTTGGGGGCTTCSEEEEE
T ss_pred cCEEEEECCCCCCHHHHHHHHhcCCc----CCCCCeEEEEEEE----CcEEEEEEecCccceeccchhhhcccccceEEE
Confidence 58999999999999999999876654 5678865544333 567899999999999999999999999999999
Q ss_pred EeCCChhh----------hhhHH-HHHHHHhhh-cCCCCEEEEEeCCCCCcccc--------------------------
Q 030504 93 FDVTARLT----------YKNVP-TWHRDLCRV-CENIPIVLCGNKVDVKNRQV-------------------------- 134 (176)
Q Consensus 93 ~d~~~~~s----------~~~~~-~~~~~~~~~-~~~~p~liv~nK~Dl~~~~~-------------------------- 134 (176)
+|.++... ..+.. .|...+... ..+.|+++++||+|+.....
T Consensus 78 ~d~s~~~~~~~~~~~~~r~~e~~~~~~~il~~~~~~~~~iil~~NK~Dl~~~k~~~~~~~~~~~f~~~~~~~~~~~~~~~ 157 (221)
T d1azta2 78 VASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRTISVILFLNKQDLLAEKVLAGKSKIEDYFPEFARYTTPEDATPE 157 (221)
T ss_dssp EETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCGGGSSCEEEEEEECHHHHHHHHHHCSSCHHHHCGGGGGCCCCTTCCCC
T ss_pred EEccccccccccccchHHHHHHHHHHHHHhcChhhCCCcEEEEechhhhhhhhhccCcccHHHhCccccccCCccccccc
Confidence 99986432 22222 233333332 36899999999999754210
Q ss_pred ---C---HHHHHH----HHH---------cCCeEEEeccCCCCChHHHHHHHHHHHhc
Q 030504 135 ---K---AKQVTF----HRK---------KNLQYYEISAKSNYNFEKPFLYLARKLAG 173 (176)
Q Consensus 135 ---~---~~~~~~----~~~---------~~~~~~~~S~~~~~~v~~~~~~l~~~i~~ 173 (176)
. .....+ +.. ..+..++|||.++.+++.+|+.+.+.|.+
T Consensus 158 ~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~y~h~T~A~Dt~ni~~vf~~v~d~I~~ 215 (221)
T d1azta2 158 PGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHFTCAVDTENIRRVFNDCRDIIQR 215 (221)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHHTSSCTTSCCEEEEECCTTCHHHHHHHHHTTHHHHHH
T ss_pred CCCchhHHHHHHHHHHHHHHHhccCCCCCCceeeeecceeccHHHHHHHHHHHHHHHH
Confidence 0 011111 111 12456789999999999999887766654
|
| >d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=99.91 E-value=6.9e-24 Score=138.63 Aligned_cols=161 Identities=19% Similarity=0.144 Sum_probs=99.2
Q ss_pred CCCCCeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCcccccc----------
Q 030504 8 TVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGG---------- 77 (176)
Q Consensus 8 ~~~~~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~---------- 77 (176)
|.....+||+++|.+|||||||+|++++..... .....+.+...........+..+.++|++|......
T Consensus 3 p~~~~~~kV~iiG~~~~GKSTLin~l~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~ 81 (186)
T d1mkya2 3 PEITDAIKVAIVGRPNVGKSTLFNAILNKERAL-VSPIPGTTRDPVDDEVFIDGRKYVFVDTAGLRRKSRVEPRTVEKYS 81 (186)
T ss_dssp CCCCSCEEEEEECSTTSSHHHHHHHHHTSTTEE-ECCCC------CCEEEEETTEEEEESSCSCC-----------CCSC
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHCCCcce-eecccccccccceeeeccCCceeeeeccCCccccccccccccccch
Confidence 444567999999999999999999987654311 111112222222222222344578889998643221
Q ss_pred --ccccccccccEEEEEEeCCChhhhhhHHHHHHHHhhhcCCCCEEEEEeCCCCCcccc--CHHHHHHHHH-----cCCe
Q 030504 78 --LRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQV--KAKQVTFHRK-----KNLQ 148 (176)
Q Consensus 78 --~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~~~~~--~~~~~~~~~~-----~~~~ 148 (176)
.....+..+|++++|+|++.+...+ ...+...+... +.|+++|+||+|+..... ..+..+..+. ...+
T Consensus 82 ~~~~~~~~~~~dvii~v~d~~~~~~~~-~~~~~~~~~~~--~~~~i~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (186)
T d1mkya2 82 NYRVVDSIEKADVVVIVLDATQGITRQ-DQRMAGLMERR--GRASVVVFNKWDLVVHREKRYDEFTKLFREKLYFIDYSP 158 (186)
T ss_dssp CHHHHHHHHHCSEEEEEEETTTCCCHH-HHHHHHHHHHT--TCEEEEEEECGGGSTTGGGCHHHHHHHHHHHCGGGTTSC
T ss_pred hHHHHHHHhcCCEEEEeecccccchhh-HHHHHHHHHHc--CCceeeeccchhhhcchhhhhhhHHHHHHHHhcccCCCe
Confidence 2223356789999999998654322 22333344443 889999999999864332 1222222222 2357
Q ss_pred EEEeccCCCCChHHHHHHHHHHHh
Q 030504 149 YYEISAKSNYNFEKPFLYLARKLA 172 (176)
Q Consensus 149 ~~~~S~~~~~~v~~~~~~l~~~i~ 172 (176)
++++||++|.|+++++++|.+.+.
T Consensus 159 i~~vSa~~g~gv~~L~~~i~~~~~ 182 (186)
T d1mkya2 159 LIFTSADKGWNIDRMIDAMNLAYA 182 (186)
T ss_dssp EEECBTTTTBSHHHHHHHHHHHHH
T ss_pred EEEEeCCCCCCHHHHHHHHHHHHH
Confidence 999999999999999999987664
|
| >d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Bacillus subtilis [TaxId: 1423]
Probab=99.91 E-value=2.9e-25 Score=145.14 Aligned_cols=160 Identities=13% Similarity=0.086 Sum_probs=97.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccc----ccccc---cccccc
Q 030504 15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFG----GLRDG---YYIHGQ 87 (176)
Q Consensus 15 ~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~----~~~~~---~~~~~~ 87 (176)
+|+|+|.+|||||||+|++.+.+......+....+......... ....+.+|||||..... ..... .+..++
T Consensus 3 ~VaiiG~~nvGKSSLin~L~~~~~~~~~~~~~T~~~~~~~~~~~-~~~~~~~~DtpG~~~~~~~~~~~~~~~l~~~~~~~ 81 (185)
T d1lnza2 3 DVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGMVETD-DGRSFVMADLPGLIEGAHQGVGLGHQFLRHIERTR 81 (185)
T ss_dssp CEEEESSTTSSHHHHHHHSEEECCEESSTTSSCCCCCEEEEECS-SSCEEEEEEHHHHHHHTTCTTTTHHHHHHHHHHCC
T ss_pred eEEEECCCCCCHHHHHHHHhCCCCceecCCCceEeeeeceeEec-CCcEEEEecCCCcccCchHHHHHHHHHHHHHHHhh
Confidence 68999999999999999976544321111111111112222222 23357899999963221 22222 235678
Q ss_pred EEEEEEeCCChhhhhhHHHHH--HHHh----hhcCCCCEEEEEeCCCCCccccCHHHHHHHHHcCCeEEEeccCCCCChH
Q 030504 88 CAIIMFDVTARLTYKNVPTWH--RDLC----RVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFE 161 (176)
Q Consensus 88 ~~i~v~d~~~~~s~~~~~~~~--~~~~----~~~~~~p~liv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~ 161 (176)
.++++++............+. .... ....++|+++|+||+|+.+.....+........+.+++.+||++|.|++
T Consensus 82 ~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~v~~iSA~~g~Gi~ 161 (185)
T d1lnza2 82 VIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMPEAAENLEAFKEKLTDDYPVFPISAVTREGLR 161 (185)
T ss_dssp EEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTSTTHHHHHHHHHHHCCSCCCBCCCSSCCSSTTH
T ss_pred hhhheeeecccccchhhhhhhhhhhccchhhhhccCCcchhhccccchHhHHHHHHHHHHHhccCCcEEEEECCCCCCHH
Confidence 888888877554333222211 1111 1124789999999999976432222222222346789999999999999
Q ss_pred HHHHHHHHHHhcCC
Q 030504 162 KPFLYLARKLAGST 175 (176)
Q Consensus 162 ~~~~~l~~~i~~~~ 175 (176)
++++++++.+.+.|
T Consensus 162 ~L~~~i~~~L~~~p 175 (185)
T d1lnza2 162 ELLFEVANQLENTP 175 (185)
T ss_dssp HHHHHHHHHHTSCC
T ss_pred HHHHHHHHhhhhCC
Confidence 99999999987765
|
| >d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein engB species: Pyrococcus horikoshii [TaxId: 53953]
Probab=99.90 E-value=1.1e-23 Score=137.39 Aligned_cols=151 Identities=17% Similarity=0.150 Sum_probs=95.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccc---------------ccc
Q 030504 15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFG---------------GLR 79 (176)
Q Consensus 15 ~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~---------------~~~ 79 (176)
.|+++|.+|||||||+|++.+.+... ..+.|+|.....+... .+.++||||..... ...
T Consensus 2 ~I~lvG~~nvGKSsLin~l~~~~~~~--~~~~g~T~~~~~~~~~----~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~ 75 (184)
T d2cxxa1 2 TIIFAGRSNVGKSTLIYRLTGKKVRR--GKRPGVTRKIIEIEWK----NHKIIDMPGFGFMMGLPKEVQERIKDEIVHFI 75 (184)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSCCCSS--SSSTTCTTSCEEEEET----TEEEEECCCBSCCTTSCHHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCCCcee--eCCCCEeecccccccc----cceecccCCceeccccccccccccchhhhhhh
Confidence 58999999999999999987655432 2333344443333222 25789999952111 112
Q ss_pred ccccccccEEEEEEeCCChhhhhh---------HH-HHHHHHhhhcCCCCEEEEEeCCCCCccccCHHHHHHHHHc----
Q 030504 80 DGYYIHGQCAIIMFDVTARLTYKN---------VP-TWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKK---- 145 (176)
Q Consensus 80 ~~~~~~~~~~i~v~d~~~~~s~~~---------~~-~~~~~~~~~~~~~p~liv~nK~Dl~~~~~~~~~~~~~~~~---- 145 (176)
...++.+|++++|+|......... .. .....+... +.|+++|+||+|+..... .....+....
T Consensus 76 ~~~~~~~d~~~~vvD~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~--~~p~iiv~NK~D~~~~~~-~~~~~~~~~~~~~~ 152 (184)
T d2cxxa1 76 EDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLREL--DIPTIVAVNKLDKIKNVQ-EVINFLAEKFEVPL 152 (184)
T ss_dssp HHHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHHT--TCCEEEEEECGGGCSCHH-HHHHHHHHHHTCCG
T ss_pred hhcccccchheeeeeccccchhhhhhhhccccHHHHHHHHHHHHc--CCCEEEEEeeeehhhhHH-HHHHHHHHHhcccc
Confidence 233567899999999875432111 11 223333333 899999999999764221 1111112221
Q ss_pred ---CCeEEEeccCCCCChHHHHHHHHHHHhcC
Q 030504 146 ---NLQYYEISAKSNYNFEKPFLYLARKLAGS 174 (176)
Q Consensus 146 ---~~~~~~~S~~~~~~v~~~~~~l~~~i~~~ 174 (176)
...++++||++|.|+++++++|.+.+.|+
T Consensus 153 ~~~~~~~~~vSA~~g~gi~~L~~~i~~~l~e~ 184 (184)
T d2cxxa1 153 SEIDKVFIPISAKFGDNIERLKNRIFEVIRER 184 (184)
T ss_dssp GGHHHHEEECCTTTCTTHHHHHHHHHHHHHHC
T ss_pred cccCCeEEEEECCCCCCHHHHHHHHHHHccCC
Confidence 23489999999999999999999988764
|
| >d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor IF2/eIF5b, N-terminal (G) domain species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=99.90 E-value=9.6e-24 Score=141.90 Aligned_cols=154 Identities=21% Similarity=0.231 Sum_probs=99.9
Q ss_pred EEEEcCCCCcHHHHHHHHhcCCCCCccc--cc--eeEEEeEE------------EEEecCcEEEEEEEeCCCcccccccc
Q 030504 16 LVIVGDGGTGKTTFVKRHLTGEFEKKYE--PT--IGVEVHPL------------DFFTNCGKIRFYCWDTAGQEKFGGLR 79 (176)
Q Consensus 16 i~i~G~~~~GKttl~~~~~~~~~~~~~~--~~--~~~~~~~~------------~~~~~~~~~~~~~~D~~g~~~~~~~~ 79 (176)
|+|+|++++|||||+++++......... .+ .+...... ...+......+.++|||||+.|....
T Consensus 8 IaIiGh~d~GKSTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iDtPGh~~f~~~~ 87 (227)
T d1g7sa4 8 VSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEAFTTLR 87 (227)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHSCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSCCTTSB
T ss_pred EEEEeCCCccHHHHHHHHHhhcchheecCceeeeccccccccccccccccccccceeecccccccccccccceecccccc
Confidence 9999999999999999987532211000 00 00000000 01123344568899999999998888
Q ss_pred ccccccccEEEEEEeCCChhhhhhHHHHHHHHhhhcCCCCEEEEEeCCCCCccccCH--------------H----H---
Q 030504 80 DGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKA--------------K----Q--- 138 (176)
Q Consensus 80 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~~~~~~~--------------~----~--- 138 (176)
...+..+|++|+|+|+.++-..+.. ..+..+... +.|+++++||+|+....... . .
T Consensus 88 ~~~~~~~D~~ilVvda~~g~~~~~~-~~~~~~~~~--~~p~iivlNK~D~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 164 (227)
T d1g7sa4 88 KRGGALADLAILIVDINEGFKPQTQ-EALNILRMY--RTPFVVAANKIDRIHGWRVHEGRPFMETFSKQDIQVQQKLDTK 164 (227)
T ss_dssp CSSSBSCSEEEEEEETTTCCCHHHH-HHHHHHHHT--TCCEEEEEECGGGSTTCCCCTTCCHHHHHTTSCHHHHHHHHHH
T ss_pred hhcccccceEEEEEecccCcccchh-HHHHHhhcC--CCeEEEEEECccCCCchhhhhhHHHHHhhhcchHHHHHHHHHH
Confidence 8888999999999999876443333 223334443 88999999999986522110 0 0
Q ss_pred ----H-HHHHH--------------cCCeEEEeccCCCCChHHHHHHHHHHHh
Q 030504 139 ----V-TFHRK--------------KNLQYYEISAKSNYNFEKPFLYLARKLA 172 (176)
Q Consensus 139 ----~-~~~~~--------------~~~~~~~~S~~~~~~v~~~~~~l~~~i~ 172 (176)
. .+... ...+++.+||++|.|++++++.|.....
T Consensus 165 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~pvSa~~G~gid~Ll~~l~~l~~ 217 (227)
T d1g7sa4 165 VYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPELLTMLMGLAQ 217 (227)
T ss_dssp HHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhhhhhcccccccCCCeEEEeeCCCCCCHHHHHHHHHHHHH
Confidence 0 00100 1146899999999999999998876553
|
| >d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Sulfolobus solfataricus [TaxId: 2287]
Probab=99.90 E-value=1.6e-22 Score=133.97 Aligned_cols=166 Identities=17% Similarity=0.120 Sum_probs=106.7
Q ss_pred CCCCCCeeEEEEEcCCCCcHHHHHHHHhcCCCCCc---ccc----ceeEEEeEEEEE----------------------e
Q 030504 7 QTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKK---YEP----TIGVEVHPLDFF----------------------T 57 (176)
Q Consensus 7 ~~~~~~~~~i~i~G~~~~GKttl~~~~~~~~~~~~---~~~----~~~~~~~~~~~~----------------------~ 57 (176)
.+...+++||+++|+.++|||||+++++....... ... ..+......... .
T Consensus 2 ~~~~~p~ini~iiGhVd~GKSTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (205)
T d2qn6a3 2 WPKVQPEVNIGVVGHVDHGKTTLVQAITGIWTSKHSEELKRGMTIKLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDE 81 (205)
T ss_dssp CCCCCCCEEEEEECSTTSSHHHHHHHHHSCCC--------------CEEEEEEEEECTTSCTTTTEESSSCCGGGTCCSC
T ss_pred CCCCCCCeEEEEEEccCCcHHHHHHHHHhhhchhhHHHHHhhcccccchhhhhhhhhhhhhhhheeeecccceeeeeecc
Confidence 35667889999999999999999999864211100 000 001110000000 0
Q ss_pred cCcEEEEEEEeCCCccccccccccccccccEEEEEEeCCChhhhhhHHHHHHHHhhhcCCCCEEEEEeCCCCCccccCHH
Q 030504 58 NCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAK 137 (176)
Q Consensus 58 ~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~~~~~~~~ 137 (176)
......+.+.|+|||..|.......+..+|++|+|+|+.+.-........+..+... .-.|++++.||.|+.+......
T Consensus 82 ~~~~r~~~iiD~PGH~df~~~~~~~~~~ad~ailvVda~~gi~~~~t~e~~~~~~~~-~i~~iIV~vNK~Dl~~~~~~~~ 160 (205)
T d2qn6a3 82 PKFLRRISFIDAPGHEVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGII-GVKNLIIVQNKVDVVSKEEALS 160 (205)
T ss_dssp CEEEEEEEEEECSCHHHHHHHHHHTSSCCSEEEEEEETTSCSSCHHHHHHHHHHHHT-TCCCEEEEEECGGGSCHHHHHH
T ss_pred ccceEEEEEeccchHHHHHhhhhcceeccccccccccccccccchhHHHHHHHHHHc-CCceeeeccccCCCccchHHHH
Confidence 112246899999999999877777788999999999998763222222222222222 2458999999999976433222
Q ss_pred H----HHHHHHc---CCeEEEeccCCCCChHHHHHHHHHHHhc
Q 030504 138 Q----VTFHRKK---NLQYYEISAKSNYNFEKPFLYLARKLAG 173 (176)
Q Consensus 138 ~----~~~~~~~---~~~~~~~S~~~~~~v~~~~~~l~~~i~~ 173 (176)
. ..+.... .++++++||++|.|++++++.+...+.+
T Consensus 161 ~~~~~~~~l~~~~~~~~p~ipiSA~~g~nI~~L~e~i~~~ip~ 203 (205)
T d2qn6a3 161 QYRQIKQFTKGTWAENVPIIPVSALHKINIDSLIEGIEEYIKT 203 (205)
T ss_dssp HHHHHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHSCC
T ss_pred HHHHHHHHhccccCCCCeEEEEeCCCCCChHHHHHHHHhhCCC
Confidence 1 2222222 4689999999999999999999887764
|
| >d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Bacillus subtilis [TaxId: 1423]
Probab=99.90 E-value=6.1e-23 Score=135.08 Aligned_cols=153 Identities=10% Similarity=0.071 Sum_probs=92.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCcccccc-------------ccc
Q 030504 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGG-------------LRD 80 (176)
Q Consensus 14 ~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~-------------~~~ 80 (176)
-+|+|+|.+|||||||+|++++.+......+..+.+........... +.+.|++|...... .+.
T Consensus 24 ~~I~lvG~~n~GKSTLin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~---~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (195)
T d1svia_ 24 PEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYIINDE---LHFVDVPGYGFAKVSKSEREAWGRMIETYI 100 (195)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEEETTT---EEEEECCCBCCCSSCHHHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHhcCCCceEEeecccceeeeccccccccc---ceEEEEEeeccccccccccchhhhHHhhhh
Confidence 38999999999999999998765433333333333333333333322 34566665322111 122
Q ss_pred cccccccEEEEEEeCCChhhhhhHHHHHHHHhhhcCCCCEEEEEeCCCCCccccCHHHH-HHHHH----cCCeEEEeccC
Q 030504 81 GYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQV-TFHRK----KNLQYYEISAK 155 (176)
Q Consensus 81 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~~~~~~~~~~-~~~~~----~~~~~~~~S~~ 155 (176)
.....++++++|+|++.+... ....+++.+... ++|+++|+||+|+..+....+.. .+.+. ...+++.+||+
T Consensus 101 ~~~~~~~~vi~viD~~~~~~~-~~~~~~~~l~~~--~~piivv~NK~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~~SA~ 177 (195)
T d1svia_ 101 TTREELKAVVQIVDLRHAPSN-DDVQMYEFLKYY--GIPVIVIATKADKIPKGKWDKHAKVVRQTLNIDPEDELILFSSE 177 (195)
T ss_dssp HHCTTEEEEEEEEETTSCCCH-HHHHHHHHHHHT--TCCEEEEEECGGGSCGGGHHHHHHHHHHHHTCCTTSEEEECCTT
T ss_pred ccccchhhhhhhhhccccccc-cccccccccccc--cCcceechhhccccCHHHHHHHHHHHHHHhcccCCCCEEEEeCC
Confidence 234567999999999865422 222444445444 88999999999986544333322 22222 34689999999
Q ss_pred CCCChHHHHHHHHHHHh
Q 030504 156 SNYNFEKPFLYLARKLA 172 (176)
Q Consensus 156 ~~~~v~~~~~~l~~~i~ 172 (176)
+|.|+++++++|.+.+.
T Consensus 178 ~~~gi~el~~~i~~~l~ 194 (195)
T d1svia_ 178 TKKGKDEAWGAIKKMIN 194 (195)
T ss_dssp TCTTHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHhC
Confidence 99999999999988764
|
| >d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Archaeon Pyrococcus abyssi [TaxId: 29292]
Probab=99.89 E-value=2.3e-23 Score=137.05 Aligned_cols=161 Identities=16% Similarity=0.077 Sum_probs=105.9
Q ss_pred CCCeeEEEEEcCCCCcHHHHHHHHhcCCCCCc-------cccceeEEEeEEEE-----------------EecCcEEEEE
Q 030504 10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKK-------YEPTIGVEVHPLDF-----------------FTNCGKIRFY 65 (176)
Q Consensus 10 ~~~~~~i~i~G~~~~GKttl~~~~~~~~~~~~-------~~~~~~~~~~~~~~-----------------~~~~~~~~~~ 65 (176)
..+.+||+++|+.++|||||++++++...... .....++....... ........+.
T Consensus 2 ~~~~inIaiiGhvd~GKSTL~~~L~g~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (195)
T d1kk1a3 2 RQAEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVS 81 (195)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEEE
T ss_pred CCCcEEEEEEeccCCcHHHHHHHHHhhhhhhhHHHHHcCcccccchhhhhhhccchhhhccceeeeeeeeeeecCceeEe
Confidence 35789999999999999999999865321110 00011111111110 0111245689
Q ss_pred EEeCCCccccccccccccccccEEEEEEeCCChhhhhhHHHHHHHHhhhcCCCCEEEEEeCCCCCccccCHH----HHHH
Q 030504 66 CWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAK----QVTF 141 (176)
Q Consensus 66 ~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~~~~~~~~----~~~~ 141 (176)
++|+||++.|.......+..+|++++|+|+.++...+.....+..+... ...+++++.||.|+.+.....+ ..++
T Consensus 82 ~iDtPGh~~f~~~~~~~~~~~d~~ilvvda~~g~~~~~t~e~~~~~~~~-~~~~iiv~inK~D~~d~~~~~~~~~~~~~~ 160 (195)
T d1kk1a3 82 FIDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMALQII-GQKNIIIAQNKIELVDKEKALENYRQIKEF 160 (195)
T ss_dssp EEECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHHHHH-TCCCEEEEEECGGGSCHHHHHHHHHHHHHH
T ss_pred eeccchhhhhhHHhhcccccccccccccchhhhhhhhhhHHHHHHHHHh-cCccceeeeecccchhhHHHHHHHHHHHHH
Confidence 9999999999888777788999999999999864333333333333333 2345888899999986432222 2233
Q ss_pred HHHc---CCeEEEeccCCCCChHHHHHHHHHHH
Q 030504 142 HRKK---NLQYYEISAKSNYNFEKPFLYLARKL 171 (176)
Q Consensus 142 ~~~~---~~~~~~~S~~~~~~v~~~~~~l~~~i 171 (176)
.... .++++++||++|+|++++++.+.+.+
T Consensus 161 ~~~~~~~~~~iIpiSA~~G~ni~~Ll~~I~~~i 193 (195)
T d1kk1a3 161 IEGTVAENAPIIPISALHGANIDVLVKAIEDFI 193 (195)
T ss_dssp HTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHS
T ss_pred hccccCCCCeEEEEECCCCCCHHHHHHHHHHHC
Confidence 3332 36899999999999999999988765
|
| >d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Cow (Bos taurus), mitochondrial [TaxId: 9913]
Probab=99.89 E-value=2.5e-23 Score=136.34 Aligned_cols=160 Identities=12% Similarity=0.020 Sum_probs=113.1
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHhcC-----C--C-------CCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccc
Q 030504 11 YPSFKLVIVGDGGTGKTTFVKRHLTG-----E--F-------EKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFG 76 (176)
Q Consensus 11 ~~~~~i~i~G~~~~GKttl~~~~~~~-----~--~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~ 76 (176)
++++||+++|+.++|||||+++++.. . . ........|++.......+......+.+.|+||+..|.
T Consensus 1 kp~ini~iiGHvd~GKSTL~~~l~~~~~~~~~~~~~~~~~~~~~~~Er~rgiTi~~~~~~~~~~~~~~~~iDtPGh~~f~ 80 (196)
T d1d2ea3 1 KPHVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGHADYV 80 (196)
T ss_dssp CCEEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSSCEEEEEECSSHHHHH
T ss_pred CCCcEEEEEeCCCCcHHHHHHHHHHHHHHcCcchhhhhhhcccchhhcCCCccCCcceEEEEeceeeEEeecCcchHHHH
Confidence 46899999999999999999997641 0 0 01112234566666666676677789999999999988
Q ss_pred cccccccccccEEEEEEeCCChhhhhhHHHHHHHHhhhcCCCCEEEEEeCCCCCcccc-----CHHHHHHHHHcC-----
Q 030504 77 GLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQV-----KAKQVTFHRKKN----- 146 (176)
Q Consensus 77 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~~~~~-----~~~~~~~~~~~~----- 146 (176)
......+..+|++++|+|+.++..-+....+. .+... ...|++++.||.|+..... ..+...++...+
T Consensus 81 ~~~~~~~~~aD~allVVda~~G~~~QT~~~~~-~a~~~-~~~~iIv~iNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~ 158 (196)
T d1d2ea3 81 KNMITGTAPLDGCILVVAANDGPMPQTREHLL-LARQI-GVEHVVVYVNKADAVQDSEMVELVELEIRELLTEFGYKGEE 158 (196)
T ss_dssp HHHHHTSSCCSEEEEEEETTTCSCHHHHHHHH-HHHHT-TCCCEEEEEECGGGCSCHHHHHHHHHHHHHHHHHTTSCTTT
T ss_pred HHHHHHHhhcCeEEEEEEcCCCCchhHHHHHH-HHHHh-cCCcEEEEEecccccccHHHHHHHHHHHHHHHHHhCCCccc
Confidence 87777889999999999999876544443332 22222 3568999999999865321 112334444333
Q ss_pred CeEEEeccCCC----------CChHHHHHHHHHHHh
Q 030504 147 LQYYEISAKSN----------YNFEKPFLYLARKLA 172 (176)
Q Consensus 147 ~~~~~~S~~~~----------~~v~~~~~~l~~~i~ 172 (176)
++++.+|+++| .++.++++.+...+.
T Consensus 159 ~pii~iSa~~g~~~~~~~~~~~~~~~Lldai~~~iP 194 (196)
T d1d2ea3 159 TPIIVGSALCALEQRDPELGLKSVQKLLDAVDTYIP 194 (196)
T ss_dssp SCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHHHSC
T ss_pred CEEEEEEccccccccCcccccCCHHHHHHHHHhhCC
Confidence 57999999998 488888888776653
|
| >d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=99.85 E-value=9.7e-22 Score=129.72 Aligned_cols=143 Identities=17% Similarity=0.115 Sum_probs=98.5
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHhc--C------CCCCc-------cccceeEEEeEEEEEecCcEEEEEEEeCCCcccc
Q 030504 11 YPSFKLVIVGDGGTGKTTFVKRHLT--G------EFEKK-------YEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKF 75 (176)
Q Consensus 11 ~~~~~i~i~G~~~~GKttl~~~~~~--~------~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~ 75 (176)
+|++||+++|++++|||||+++++. | ..... .....|++.......+......+.++||||++.|
T Consensus 1 k~~ini~iiGhvd~GKSTL~~~Ll~~~g~~~~~~~~~~~~~~d~~~eE~~rgiTi~~~~~~~~~~~~~i~iiDtPGh~df 80 (204)
T d2c78a3 1 KPHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHADY 80 (204)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSSCEEEEEECCCSGGG
T ss_pred CCCeEEEEEeCCCCcHHHHHHHHHHHhhhccCCcchhhhhhcccchHHhcCCeEEEeeEEEEEeCCeEEEEEeCCCchhh
Confidence 4689999999999999999999863 1 11100 0111255555555566667778899999999999
Q ss_pred ccccccccccccEEEEEEeCCChhhhhhHHHHHHHHhhhcCCCC-EEEEEeCCCCCcccc-----CHHHHHHHHHcC---
Q 030504 76 GGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIP-IVLCGNKVDVKNRQV-----KAKQVTFHRKKN--- 146 (176)
Q Consensus 76 ~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p-~liv~nK~Dl~~~~~-----~~~~~~~~~~~~--- 146 (176)
.......+..+|++|+|+|+.++...+....|. .+... +.| +++++||.|+.+... ..+...+....+
T Consensus 81 ~~~~~~~~~~aD~avlVvda~~Gv~~qt~~~~~-~~~~~--gi~~iiv~iNK~D~~~~~~~~~~~~~~i~~~l~~~~~~~ 157 (204)
T d2c78a3 81 IKNMITGAAQMDGAILVVSAADGPMPQTREHIL-LARQV--GVPYIVVFMNKVDMVDDPELLDLVEMEVRDLLNQYEFPG 157 (204)
T ss_dssp HHHHHHHHTTCSSEEEEEETTTCCCHHHHHHHH-HHHHT--TCCCEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTTSCT
T ss_pred HHHHHHHHHHCCEEEEEEECCCCCcHHHHHHHH-HHHHc--CCCeEEEEEEecccCCCHHHHHHHHHHHHHHHHhcCCCc
Confidence 888888889999999999999887666555443 33333 665 777899999865321 122334444433
Q ss_pred --CeEEEeccCC
Q 030504 147 --LQYYEISAKS 156 (176)
Q Consensus 147 --~~~~~~S~~~ 156 (176)
++++..|+..
T Consensus 158 ~~i~~i~~sa~~ 169 (204)
T d2c78a3 158 DEVPVIRGSALL 169 (204)
T ss_dssp TTSCEEECCHHH
T ss_pred ccceeeeeechh
Confidence 5688888753
|
| >d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=99.83 E-value=2.6e-20 Score=120.66 Aligned_cols=156 Identities=19% Similarity=0.177 Sum_probs=96.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccc---------ccccccccccc
Q 030504 15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK---------FGGLRDGYYIH 85 (176)
Q Consensus 15 ~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~---------~~~~~~~~~~~ 85 (176)
.|+++|.+|||||||+|++.+......... .+.+..............+..+|++|... ...........
T Consensus 7 ~I~iiG~~nvGKSSLin~L~~~~~~~~~~~-~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (179)
T d1egaa1 7 FIAIVGRPNVGKSTLLNKLLGQKISITSRK-AQTTRHRIVGIHTEGAYQAIYVDTPGLHMEEKRAINRLMNKAASSSIGD 85 (179)
T ss_dssp EEEEECSSSSSHHHHHHHHHTCSEEECCCC-SSCCSSCEEEEEEETTEEEEEESSSSCCHHHHHHHHHHHTCCTTSCCCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCceeeccC-CCceEEEEEeeeecCCceeEeecCCCceecchhhhhhhhhhccccchhh
Confidence 589999999999999999876543211111 11111111111112333456788887432 12233334456
Q ss_pred ccEEEEEEeCCChhhhhhHHHHHHHHhhhcCCCCEEEEEeCCCCCcccc--CHHHHHHHHHcC-CeEEEeccCCCCChHH
Q 030504 86 GQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQV--KAKQVTFHRKKN-LQYYEISAKSNYNFEK 162 (176)
Q Consensus 86 ~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~~~~~--~~~~~~~~~~~~-~~~~~~S~~~~~~v~~ 162 (176)
+++++++.|..+.. .....+...+.+ ...|.++++||.|+..... ...........+ .+++++||++|.|+++
T Consensus 86 ~~~~l~~~d~~~~~--~~~~~~~~~l~~--~~~~~i~v~~k~d~~~~~~~~~~~~~~~~~~~~~~~~~~vSA~~g~gi~~ 161 (179)
T d1egaa1 86 VELVIFVVEGTRWT--PDDEMVLNKLRE--GKAPVILAVNKVDNVQEKADLLPHLQFLASQMNFLDIVPISAETGLNVDT 161 (179)
T ss_dssp EEEEEEEEETTCCC--HHHHHHHHHHHS--SSSCEEEEEESTTTCCCHHHHHHHHHHHHTTSCCSEEEECCTTTTTTHHH
T ss_pred cceeEEEEecCccc--hhHHHHHHHhhh--ccCceeeeeeeeeccchhhhhhhHhhhhhhhcCCCCEEEEeCcCCCCHHH
Confidence 78888888877543 222222333333 3778999999999765432 222334444444 5899999999999999
Q ss_pred HHHHHHHHHhcCC
Q 030504 163 PFLYLARKLAGST 175 (176)
Q Consensus 163 ~~~~l~~~i~~~~ 175 (176)
++++|++.+.|.|
T Consensus 162 L~~~i~~~lpe~~ 174 (179)
T d1egaa1 162 IAAIVRKHLPEAT 174 (179)
T ss_dssp HHHHHHTTCCBCC
T ss_pred HHHHHHHhCCCCC
Confidence 9999999887754
|
| >d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain species: Pseudomonas syringae pv. tomato [TaxId: 323]
Probab=99.83 E-value=5.4e-20 Score=122.49 Aligned_cols=150 Identities=20% Similarity=0.203 Sum_probs=99.2
Q ss_pred CCCCeeEEEEEcCCCCcHHHHHHHHhc--CCCCCc-----------------------------cccceeEEEeEEEEEe
Q 030504 9 VDYPSFKLVIVGDGGTGKTTFVKRHLT--GEFEKK-----------------------------YEPTIGVEVHPLDFFT 57 (176)
Q Consensus 9 ~~~~~~~i~i~G~~~~GKttl~~~~~~--~~~~~~-----------------------------~~~~~~~~~~~~~~~~ 57 (176)
...+.+||+++|+.++|||||+.+++. |..... .....+.+........
T Consensus 5 ~~~~~~~i~viGHVd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~ 84 (222)
T d1zunb3 5 ERKEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYF 84 (222)
T ss_dssp TSCEEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEE
T ss_pred ccCCcceEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHHHHhcCccccceeeeeccccchhhhccCCCceeeEEEE
Confidence 345789999999999999999999863 221100 0011122333333334
Q ss_pred cCcEEEEEEEeCCCccccccccccccccccEEEEEEeCCChhhhhhHHHHHHHHhhhcCCCC-EEEEEeCCCCCcccc--
Q 030504 58 NCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIP-IVLCGNKVDVKNRQV-- 134 (176)
Q Consensus 58 ~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p-~liv~nK~Dl~~~~~-- 134 (176)
......+.++|+|||+.|.......+..+|++++|+|+.++..-+....+. .+... ++| ++++.||.|+.+...
T Consensus 85 ~~~~~~~~iiD~PGH~dfv~~~~~g~~~aD~ailVvda~~G~~~Qt~e~~~-~~~~~--gv~~iiv~vNK~D~~~~~~~~ 161 (222)
T d1zunb3 85 STAKRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQTQTRRHSY-IASLL--GIKHIVVAINKMDLNGFDERV 161 (222)
T ss_dssp ECSSEEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSCHHHHHHHH-HHHHT--TCCEEEEEEECTTTTTSCHHH
T ss_pred eccceEEEEEeccchhhhhhhhccccccCceEEEEeccccCcccchHHHHH-HHHHc--CCCEEEEEEEcccccccccee
Confidence 445567899999999999888888889999999999998875544443332 22222 654 788999999975221
Q ss_pred ----CHHHHHHHHHcC-----CeEEEeccCCCCChH
Q 030504 135 ----KAKQVTFHRKKN-----LQYYEISAKSNYNFE 161 (176)
Q Consensus 135 ----~~~~~~~~~~~~-----~~~~~~S~~~~~~v~ 161 (176)
..+...++...+ ++++++||++|+|+.
T Consensus 162 ~~~~~~~l~~~~~~~~~~~~~i~~IPiSA~~G~ni~ 197 (222)
T d1zunb3 162 FESIKADYLKFAEGIAFKPTTMAFVPMSALKGDNVV 197 (222)
T ss_dssp HHHHHHHHHHHHHTTTCCCSEEEEEECCTTTCTTTS
T ss_pred hhhhHHHHhhhhHhhccCCCceEEEEEEcccCccCC
Confidence 112334454443 468999999999884
|
| >d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.80 E-value=9.7e-20 Score=120.68 Aligned_cols=113 Identities=18% Similarity=0.192 Sum_probs=79.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCcccccccccccc----ccccEE
Q 030504 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYY----IHGQCA 89 (176)
Q Consensus 14 ~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~----~~~~~~ 89 (176)
-+|+|+|++|||||||+|++.++.+.+. . +..............+.+||+||++.+...+..++ ..++.+
T Consensus 4 p~V~lvG~~n~GKTSLln~l~~~~~~~~----t--t~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~~~~~ 77 (209)
T d1nrjb_ 4 PSIIIAGPQNSGKTSLLTLLTTDSVRPT----V--VSQEPLSAADYDGSGVTLVDFPGHVKLRYKLSDYLKTRAKFVKGL 77 (209)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHSSCCCB----C--CCSSCEEETTGGGSSCEEEECCCCGGGTHHHHHHHHHHGGGEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCe----E--EecceEEEEEeCCeEEEEEecccccchhhHHHHHHHHHhhhcccc
Confidence 3899999999999999999988776432 2 12222333445566788999999998766555543 445888
Q ss_pred EEEEeCCC-hhhhhhHHHHHHHHh----hhc-CCCCEEEEEeCCCCCcc
Q 030504 90 IIMFDVTA-RLTYKNVPTWHRDLC----RVC-ENIPIVLCGNKVDVKNR 132 (176)
Q Consensus 90 i~v~d~~~-~~s~~~~~~~~~~~~----~~~-~~~p~liv~nK~Dl~~~ 132 (176)
++++|+.+ ..+++....|+..+. ... .+.|+++++||+|+...
T Consensus 78 i~~vd~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~piiiv~NK~D~~~~ 126 (209)
T d1nrjb_ 78 IFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTA 126 (209)
T ss_dssp EEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTC
T ss_pred ceEEEEecccccHHHHHHHHHHHHHHHHHHHhccCCeEEEEEeeccccc
Confidence 99999775 455565555544332 222 58999999999998763
|
| >d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal (G) domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor eEF-1alpha, N-terminal (G) domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=99.79 E-value=3.2e-19 Score=119.33 Aligned_cols=151 Identities=20% Similarity=0.227 Sum_probs=95.6
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHhc--CCCCC---------------------------ccccceeEEEeEEEEEecCcE
Q 030504 11 YPSFKLVIVGDGGTGKTTFVKRHLT--GEFEK---------------------------KYEPTIGVEVHPLDFFTNCGK 61 (176)
Q Consensus 11 ~~~~~i~i~G~~~~GKttl~~~~~~--~~~~~---------------------------~~~~~~~~~~~~~~~~~~~~~ 61 (176)
++++||+++|+.++|||||+.+++. |.... ......|.+........+...
T Consensus 1 kp~iNi~viGHVd~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~ti~~~~~~~~~~~ 80 (224)
T d1jnya3 1 KPHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFETKK 80 (224)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEECSS
T ss_pred CCccEEEEEecCCCCHHHHHHHHHHHcCCccHHHHHHHHHHHHhcCcccccccccccCchhhhcCCccccceEEEEecCC
Confidence 3689999999999999999998753 11100 001122444444444555566
Q ss_pred EEEEEEeCCCccccccccccccccccEEEEEEeCCChhhh-----h-hHHHHHHHHhhhcCCCCEEEEEeCCCCCccccC
Q 030504 62 IRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTY-----K-NVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVK 135 (176)
Q Consensus 62 ~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~-----~-~~~~~~~~~~~~~~~~p~liv~nK~Dl~~~~~~ 135 (176)
..+.+.|||||..|.......+..+|++++|+|+.+...- . .....+ .+.....-.+++++.||.|+......
T Consensus 81 ~~i~iiDtPGH~df~~~~~~g~~~~D~allVVda~~G~~~~t~~~~~qt~e~l-~~~~~~~~~~iIv~iNK~D~~~~~~~ 159 (224)
T d1jnya3 81 YFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKKGEYEAGMSVEGQTREHI-ILAKTMGLDQLIVAVNKMDLTEPPYD 159 (224)
T ss_dssp CEEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECSTTHHHHHHSTTCHHHHHH-HHHHHTTCTTCEEEEECGGGSSSTTC
T ss_pred ceeEEeeCCCcHHHHHHHHHHHHhhceEEEEEecccCcccccccccchhHHHH-HHHHHhCCCceEEEEEcccCCCcccc
Confidence 7899999999999999888889999999999999986321 1 111111 22222234568889999998753222
Q ss_pred H--------HHHHHHHHc-----CCeEEEeccCCCCChHH
Q 030504 136 A--------KQVTFHRKK-----NLQYYEISAKSNYNFEK 162 (176)
Q Consensus 136 ~--------~~~~~~~~~-----~~~~~~~S~~~~~~v~~ 162 (176)
. ....+.... .++++++||..|.|+.+
T Consensus 160 ~~~~~~v~~~i~~~~~~~~~~~~~i~~IPISA~~G~NV~~ 199 (224)
T d1jnya3 160 EKRYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNITH 199 (224)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTTB
T ss_pred HHHHHHHHHHHHhHHHhcCCCcccCeEEEEEccCCCCccc
Confidence 1 122333333 35789999999999854
|
| >d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Escherichia coli [TaxId: 562]
Probab=99.78 E-value=1.2e-18 Score=113.31 Aligned_cols=161 Identities=13% Similarity=-0.026 Sum_probs=84.2
Q ss_pred CCCCCeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccc---------
Q 030504 8 TVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGL--------- 78 (176)
Q Consensus 8 ~~~~~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~--------- 78 (176)
.+....++|+++|.+|||||||+|++...+.........+................+...+.++.......
T Consensus 11 ~p~~~~~~I~lvG~~NvGKSSL~n~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (188)
T d1puia_ 11 LPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVADGKRLVDLPGYGYAEVPEEMKRKWQRALG 90 (188)
T ss_dssp SSCSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEETTEEEEECCCCC------CCHHHHHHHHH
T ss_pred CCCccCCEEEEECCCCCCHHHHHHHHhCCCceEeecccccceeeccceecccccceeeeecccccchhhhhhhhhhhhhh
Confidence 34556799999999999999999997766543322222221222222222223222222222221111110
Q ss_pred -cccccccccEEEEEEeCCChhhhhhHHHHHHHHhhhcCCCCEEEEEeCCCCCccccCHHH----HHHHHHc--CCeEEE
Q 030504 79 -RDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQ----VTFHRKK--NLQYYE 151 (176)
Q Consensus 79 -~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~~~~~~~~~----~~~~~~~--~~~~~~ 151 (176)
..........++.+.+........ ...++..+... ..++++++||.|+.+....... .+..... ..+++.
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~--~~~~~~v~~k~D~~~~~~~~~~~~~~~~~l~~~~~~~~~i~ 167 (188)
T d1puia_ 91 EYLEKRQSLQGLVVLMDIRHPLKDL-DQQMIEWAVDS--NIAVLVLLTKADKLASGARKAQLNMVREAVLAFNGDVQVET 167 (188)
T ss_dssp HHHHHCTTEEEEEEEEETTSCCCHH-HHHHHHHHHHT--TCCEEEEEECGGGSCHHHHHHHHHHHHHHHGGGCSCEEEEE
T ss_pred hhhhhhhheeEEEEeecccccchhH-HHHHHHHhhhc--cccccchhhhhhccCHHHHHHHHHHHHHHHHhhCCCCcEEE
Confidence 111122344555666655443222 22333344333 7899999999998764332222 2222222 357899
Q ss_pred eccCCCCChHHHHHHHHHHH
Q 030504 152 ISAKSNYNFEKPFLYLARKL 171 (176)
Q Consensus 152 ~S~~~~~~v~~~~~~l~~~i 171 (176)
+||++|.|+++++++|.+.+
T Consensus 168 vSA~~g~Gid~L~~~i~~~~ 187 (188)
T d1puia_ 168 FSSLKKQGVDKLRQKLDTWF 187 (188)
T ss_dssp CBTTTTBSHHHHHHHHHHHH
T ss_pred EeCCCCCCHHHHHHHHHHHh
Confidence 99999999999999987653
|
| >d1r5ba3 c.37.1.8 (A:215-459) Eukaryotic peptide chain release factor ERF2, G domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Eukaryotic peptide chain release factor ERF2, G domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=99.77 E-value=2e-18 Score=116.58 Aligned_cols=153 Identities=18% Similarity=0.166 Sum_probs=85.6
Q ss_pred CCCeeEEEEEcCCCCcHHHHHHHHhc--CCCCC---------------------------ccccceeEEEeEEEEEecCc
Q 030504 10 DYPSFKLVIVGDGGTGKTTFVKRHLT--GEFEK---------------------------KYEPTIGVEVHPLDFFTNCG 60 (176)
Q Consensus 10 ~~~~~~i~i~G~~~~GKttl~~~~~~--~~~~~---------------------------~~~~~~~~~~~~~~~~~~~~ 60 (176)
..++++|+++|+.++|||||+.+++. |.... ......|.+...........
T Consensus 21 ~k~~iNi~iiGHVD~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~ti~~~~~~~~~~ 100 (245)
T d1r5ba3 21 GKEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFETE 100 (245)
T ss_dssp CCEEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEECS
T ss_pred CCCceEEEEEeeCCCCHHHHHHHHHHHcCCccHHHHHHHHHHHHhcCCccchhhhhhhccccccccCccccccccccccc
Confidence 35688999999999999999999852 21110 00111122222222233345
Q ss_pred EEEEEEEeCCCccccccccccccccccEEEEEEeCCChhhh-----h-hHHHHHHHHhhhcCCC-CEEEEEeCCCCCccc
Q 030504 61 KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTY-----K-NVPTWHRDLCRVCENI-PIVLCGNKVDVKNRQ 133 (176)
Q Consensus 61 ~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~-----~-~~~~~~~~~~~~~~~~-p~liv~nK~Dl~~~~ 133 (176)
...+.+.|+|||..|..........+|++++|+|+.+...- + .....+..+... +. +++++.||.|+....
T Consensus 101 ~~~i~~iDtPGH~df~~~~~~g~~~aD~ailVVda~~G~~~~~~~~~~QT~e~l~l~~~~--~i~~iiv~iNKmD~~~~~ 178 (245)
T d1r5ba3 101 HRRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLARTQ--GINHLVVVINKMDEPSVQ 178 (245)
T ss_dssp SEEEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHHT--TCSSEEEEEECTTSTTCS
T ss_pred cceeeeecccccccchhhhhhhhhhhcceeeEEEcCCCccCCccccccchHHHHHHHHHc--CCCeEEEEEEcCCCCccc
Confidence 56789999999999998888888999999999999875311 1 222222222222 44 488999999987533
Q ss_pred cCHH--------HHHHHHHc-------CCeEEEeccCCCCChHHHH
Q 030504 134 VKAK--------QVTFHRKK-------NLQYYEISAKSNYNFEKPF 164 (176)
Q Consensus 134 ~~~~--------~~~~~~~~-------~~~~~~~S~~~~~~v~~~~ 164 (176)
..++ ...+.++. .++++++||++|+|+.+++
T Consensus 179 ~~e~~~~ei~~~l~~~l~~i~~~~~~~~v~~VPiSA~~G~nI~~~~ 224 (245)
T d1r5ba3 179 WSEERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRV 224 (245)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSCC
T ss_pred hhHHHHHHHHHHHHHHHHHHhCcCcccCCEEEEeeccCCCCcccch
Confidence 2211 11222221 2579999999999998754
|
| >d1f60a3 c.37.1.8 (A:2-240) Elongation factor eEF-1alpha, N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor eEF-1alpha, N-terminal (G) domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.77 E-value=1.8e-18 Score=116.23 Aligned_cols=149 Identities=17% Similarity=0.179 Sum_probs=101.8
Q ss_pred CCCeeEEEEEcCCCCcHHHHHHHHhc--CCCCC------------------c---------cccceeEEEeEEEEEecCc
Q 030504 10 DYPSFKLVIVGDGGTGKTTFVKRHLT--GEFEK------------------K---------YEPTIGVEVHPLDFFTNCG 60 (176)
Q Consensus 10 ~~~~~~i~i~G~~~~GKttl~~~~~~--~~~~~------------------~---------~~~~~~~~~~~~~~~~~~~ 60 (176)
+.+++||+++|+.++|||||+.+++. |...+ . .....|++.......+...
T Consensus 3 ~k~~iNi~iiGHvD~GKsTl~~~ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~ 82 (239)
T d1f60a3 3 EKSHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFETP 82 (239)
T ss_dssp CCEEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEECS
T ss_pred CCCccEEEEEeCCCCCHHHHHHHHHHHcCCccHHHHHHHHHHHHHhcCCccceeeecccchhhhcceeccccceeEeccC
Confidence 46779999999999999999999762 21110 0 0112345555555555556
Q ss_pred EEEEEEEeCCCccccccccccccccccEEEEEEeCCChhh-------hhhHHHHHHHHhhhcCCCC-EEEEEeCCCCCcc
Q 030504 61 KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLT-------YKNVPTWHRDLCRVCENIP-IVLCGNKVDVKNR 132 (176)
Q Consensus 61 ~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s-------~~~~~~~~~~~~~~~~~~p-~liv~nK~Dl~~~ 132 (176)
..++.+.|+|||..|.......+..+|++|+|+|+..... .+...+| ...... +.| ++++.||.|+.+.
T Consensus 83 ~~~i~iiDtPGH~df~~~~~~g~~~~D~ailvvda~~G~~e~g~~~~~QT~eh~-~~~~~~--gv~~iiv~iNKmD~~~~ 159 (239)
T d1f60a3 83 KYQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHA-LLAFTL--GVRQLIVAVNKMDSVKW 159 (239)
T ss_dssp SEEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHH-HHHHHT--TCCEEEEEEECGGGGTT
T ss_pred CEEEEEEECCCcHHHHHHHHHHHHHhCEEEEEEECCCCccccccCchHhHHHHH-HHHHHc--CCCeEEEEEECCCCCCC
Confidence 7889999999999999888888999999999999987531 1233333 222222 665 7889999998753
Q ss_pred cc------CHHHHHHHHHcC-----CeEEEeccCCCCChH
Q 030504 133 QV------KAKQVTFHRKKN-----LQYYEISAKSNYNFE 161 (176)
Q Consensus 133 ~~------~~~~~~~~~~~~-----~~~~~~S~~~~~~v~ 161 (176)
.. ..+...+....+ ++++.+|+..|.|+-
T Consensus 160 d~~~~~~~~~el~~~l~~~~~~~~~i~~ipiSa~~G~ni~ 199 (239)
T d1f60a3 160 DESRFQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMI 199 (239)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTTT
T ss_pred CHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEEccCCCcce
Confidence 22 122334444433 568999999998863
|
| >d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus, EF-G-2 [TaxId: 274]
Probab=99.76 E-value=4.8e-18 Score=115.54 Aligned_cols=114 Identities=22% Similarity=0.284 Sum_probs=83.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc--CCCCCc-----------cc---cceeEEEeEEEEEecCcEEEEEEEeCCCcccccc
Q 030504 14 FKLVIVGDGGTGKTTFVKRHLT--GEFEKK-----------YE---PTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGG 77 (176)
Q Consensus 14 ~~i~i~G~~~~GKttl~~~~~~--~~~~~~-----------~~---~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~ 77 (176)
.||+++|+.++|||||+.+++. |..... +. ...+.+.......+..++.++.++||||+..|..
T Consensus 3 RNv~iiGh~~~GKTtL~e~ll~~~g~~~~~g~v~~g~~~~D~~~~E~~r~~ti~~~~~~~~~~~~~~n~iDtPGh~dF~~ 82 (267)
T d2dy1a2 3 RTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDAPGYGDFVG 82 (267)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEECCCSGGGHH
T ss_pred eEEEEEcCCCCcHHHHHHHHHHHcCCchhhccchhccccccchHHHHHhCCeEEeecccccccccceeEEccCchhhhhh
Confidence 5799999999999999999763 211100 00 0112333333344445667889999999999999
Q ss_pred ccccccccccEEEEEEeCCChhhhhhHHHHHHHHhhhcCCCCEEEEEeCCCCC
Q 030504 78 LRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVK 130 (176)
Q Consensus 78 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~ 130 (176)
.....++.+|++++|+|+.++-..+....|. .+.+. +.|.++++||.|..
T Consensus 83 e~~~al~~~D~avlvvda~~Gv~~~t~~~~~-~~~~~--~~p~~i~iNk~D~~ 132 (267)
T d2dy1a2 83 EIRGALEAADAALVAVSAEAGVQVGTERAWT-VAERL--GLPRMVVVTKLDKG 132 (267)
T ss_dssp HHHHHHHHCSEEEEEEETTTCSCHHHHHHHH-HHHHT--TCCEEEEEECGGGC
T ss_pred hhhhhhcccCceEEEeeccCCccchhHHHHH-hhhhc--cccccccccccccc
Confidence 8888999999999999999887666665553 44444 89999999999964
|
| >d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=99.74 E-value=6.4e-18 Score=115.20 Aligned_cols=134 Identities=19% Similarity=0.191 Sum_probs=98.0
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhc--CCCCCc--------------cccceeEEEeEEEEEecCcEEEEEEEeCCCccccc
Q 030504 13 SFKLVIVGDGGTGKTTFVKRHLT--GEFEKK--------------YEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFG 76 (176)
Q Consensus 13 ~~~i~i~G~~~~GKttl~~~~~~--~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~ 76 (176)
..||+++|+.++|||||+.+++. |..... .....|.+.......+..++..+.++||||+..|.
T Consensus 6 iRni~i~gh~~~GKTtL~e~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~r~~si~~~~~~~~~~~~~~n~iDtPG~~dF~ 85 (276)
T d2bv3a2 6 LRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWKDHRINIIDAPGHVDFT 85 (276)
T ss_dssp EEEEEEEECTTSCHHHHHHHHHHHHTSSCC-------------------CCCCCCCSEEEEEETTEEEEEECCCSSSSCS
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHhcCccccccceecCceEEeccHHHHhcCCccccceeeeccCCeEEEEecCCchhhhH
Confidence 34799999999999999999863 221110 01112333444444556677789999999999999
Q ss_pred cccccccccccEEEEEEeCCChhhhhhHHHHHHHHhhhcCCCCEEEEEeCCCCCccccCHHHHHHHHHcCCeE
Q 030504 77 GLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQY 149 (176)
Q Consensus 77 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~~~~~~~~~~~~~~~~~~~~ 149 (176)
......+..+|++|+|+|+.++-..+....| +...+. +.|.++++||.|.+......-..++-..++..+
T Consensus 86 ~e~~~~l~~~D~avlVvda~~Gv~~~T~~~w-~~a~~~--~lP~i~fINKmDr~~ad~~~~l~ei~~~l~~~~ 155 (276)
T d2bv3a2 86 IEVERSMRVLDGAIVVFDSSQGVEPQSETVW-RQAEKY--KVPRIAFANKMDKTGADLWLVIRTMQERLGARP 155 (276)
T ss_dssp TTHHHHHHHCCEEEEEEETTTSSCHHHHHHH-HHHHTT--TCCEEEEEECTTSTTCCHHHHHHHHHHTTCCCE
T ss_pred HHHHHHHHhhhheEEeccccCCcchhHHHHH-HHHHHc--CCCEEEEEecccccccccchhHHHHHHHhCCCe
Confidence 9999999999999999999988766666555 444454 999999999999998777665566666666443
|
| >d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-inducible GTPase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.67 E-value=2.8e-16 Score=113.03 Aligned_cols=156 Identities=15% Similarity=0.170 Sum_probs=90.6
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHhcCCCCCccc---cceeEEEeEEEEEecCcEEEEEEEeCCCccccccc-----ccccc
Q 030504 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYE---PTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGL-----RDGYY 83 (176)
Q Consensus 12 ~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~-----~~~~~ 83 (176)
.+++|+|+|.+|+|||||+|.+++........ ...+++.....+... ....+.+|||||....... ....+
T Consensus 55 ~~l~Iai~G~~n~GKSSLiNaL~G~~~~~~~~~~~g~~~tT~~~~~~~~~-~~~~~~l~DtPG~~~~~~~~~~~~~~~~~ 133 (400)
T d1tq4a_ 55 SVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHP-NIPNVVFWDLPGIGSTNFPPDTYLEKMKF 133 (400)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEECS-SCTTEEEEECCCGGGSSCCHHHHHHHTTG
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCcCCCccCCCCCCCCceeeeeeecc-CCCeEEEEeCCCcccccccHHHHHHHhhh
Confidence 56999999999999999999977533222111 122233333333322 2234779999997543322 22235
Q ss_pred ccccEEEEEEeCCChhhhhhHHHHHHHHhhhcCCCCEEEEEeCCCCCccc--------cC-H----HH----HHHHHHcC
Q 030504 84 IHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQ--------VK-A----KQ----VTFHRKKN 146 (176)
Q Consensus 84 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~~~~--------~~-~----~~----~~~~~~~~ 146 (176)
..+|.++++.|..-... -...+..+.+. ++|+++|.||+|..... .. . +. ....+..+
T Consensus 134 ~~~d~~l~~~~~~~~~~---d~~l~~~l~~~--~k~~~~V~nK~D~~~~~~~~~~~~~~~~e~~l~~ir~~~~~~l~~~~ 208 (400)
T d1tq4a_ 134 YEYDFFIIISATRFKKN---DIDIAKAISMM--KKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENG 208 (400)
T ss_dssp GGCSEEEEEESSCCCHH---HHHHHHHHHHT--TCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHTT
T ss_pred hcceEEEEecCCCCCHH---HHHHHHHHHHc--CCCEEEEEeCcccccchhhhcccccccHHHHHHHHHHHHHHHHHHcC
Confidence 56788888877442221 12334444444 89999999999953110 00 1 11 12222333
Q ss_pred ---CeEEEeccCC--CCChHHHHHHHHHHHhc
Q 030504 147 ---LQYYEISAKS--NYNFEKPFLYLARKLAG 173 (176)
Q Consensus 147 ---~~~~~~S~~~--~~~v~~~~~~l~~~i~~ 173 (176)
.++|.+|..+ ..|+.++.+++.+.+.+
T Consensus 209 ~~~~~vflvS~~~~~~~d~~~L~~~l~~~L~~ 240 (400)
T d1tq4a_ 209 IAEPPIFLLSNKNVCHYDFPVLMDKLISDLPI 240 (400)
T ss_dssp CSSCCEEECCTTCTTSTTHHHHHHHHHHHSCG
T ss_pred CCCCCEEEecCCcccccCHHHHHHHHHHHhHH
Confidence 3578888764 34899999998877643
|
| >d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor 2 (eEF-2), N-terminal (G) domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.65 E-value=1.7e-16 Score=111.17 Aligned_cols=117 Identities=16% Similarity=0.225 Sum_probs=81.8
Q ss_pred Cee-EEEEEcCCCCcHHHHHHHHhc--CCCCCc------c------ccceeEEEeEEEEE----------------ecCc
Q 030504 12 PSF-KLVIVGDGGTGKTTFVKRHLT--GEFEKK------Y------EPTIGVEVHPLDFF----------------TNCG 60 (176)
Q Consensus 12 ~~~-~i~i~G~~~~GKttl~~~~~~--~~~~~~------~------~~~~~~~~~~~~~~----------------~~~~ 60 (176)
..+ ||+|+|+.++|||||+.+++. |..... + ....|.+....... .+++
T Consensus 15 ~~IRNI~iiGhvd~GKTTL~d~Ll~~~g~i~~~~~~~~~~~D~~~~E~eRgiTi~~~~~~l~~~~~~~~~~~~~~~~~~~ 94 (341)
T d1n0ua2 15 TNVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDGN 94 (341)
T ss_dssp GGEEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCSS
T ss_pred ccCcEEEEEeCCCCcHHHHHHHHHHHCCCccccccccccccccchhHHhcCceEeCCEEEEEeccCcccccchhcccccc
Confidence 345 699999999999999999863 211100 0 00011111111111 1345
Q ss_pred EEEEEEEeCCCccccccccccccccccEEEEEEeCCChhhhhhHHHHHHHHhhhcCCCCEEEEEeCCCCCc
Q 030504 61 KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKN 131 (176)
Q Consensus 61 ~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~~ 131 (176)
.+.+.++|||||..|.......++-+|++++|+|+.++-..+....|...... +.|.++++||.|...
T Consensus 95 ~~~inliDtPGh~dF~~ev~~al~~~D~allVVda~eGv~~qT~~~~~~a~~~---~~p~i~viNKiDr~~ 162 (341)
T d1n0ua2 95 SFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTETVLRQALGE---RIKPVVVINKVDRAL 162 (341)
T ss_dssp EEEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHHHHHHHHHHT---TCEEEEEEECHHHHH
T ss_pred ceEEEEEcCCCcHHHHHHHHHHHhhcCceEEEEecccCcchhHHHHHHHHHHc---CCCeEEEEECccccc
Confidence 67899999999999999888889999999999999998776666655444333 899999999999653
|
| >d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Chloroplast protein translocon GTPase Toc34 species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=99.61 E-value=2.7e-15 Score=101.94 Aligned_cols=121 Identities=13% Similarity=0.082 Sum_probs=73.8
Q ss_pred CCCeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCccccccccc---------
Q 030504 10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRD--------- 80 (176)
Q Consensus 10 ~~~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~--------- 80 (176)
....++|+++|.+|+|||||+|.+++...... .+..+.+...........+..+.++||||.........
T Consensus 29 ~~~~l~I~LvG~tg~GKSSliN~ilg~~~~~v-s~~~~~T~~~~~~~~~~~g~~i~viDTPGl~~~~~~~~~~~~~i~~~ 107 (257)
T d1h65a_ 29 DVNSLTILVMGKGGVGKSSTVNSIIGERVVSI-SPFQSEGPRPVMVSRSRAGFTLNIIDTPGLIEGGYINDMALNIIKSF 107 (257)
T ss_dssp TCCEEEEEEEESTTSSHHHHHHHHHTSCCSCC-CSSSCCCSSCEEEEEEETTEEEEEEECCCSEETTEECHHHHHHHHHH
T ss_pred CCCCcEEEEECCCCCcHHHHHHHHhCCCceee-cCCCCcceeEEEEEEEeccEEEEEEeeecccCCcchHHHHHHHHHHH
Confidence 35789999999999999999999876543322 22333444444433333556789999999643211111
Q ss_pred cccccccEEEEEEeCCChhhhhhHHHHHHHHhhhc---CCCCEEEEEeCCCCCc
Q 030504 81 GYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC---ENIPIVLCGNKVDVKN 131 (176)
Q Consensus 81 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~---~~~p~liv~nK~Dl~~ 131 (176)
......+++++|++++...--......+..+...+ -..++++|.||+|...
T Consensus 108 ~~~~~~~~il~v~~~~~~r~~~~~~~~l~~l~~~fg~~~~~~~ivv~t~~D~~~ 161 (257)
T d1h65a_ 108 LLDKTIDVLLYVDRLDAYRVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSP 161 (257)
T ss_dssp TTTCEECEEEEEEESSCCCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECCSCCC
T ss_pred HhcCCCCeEEEEEECCCCCCCHHHHHHHHHHHHHcchhhhhCEEEEEECcccCC
Confidence 11235689999998875421111222233333322 1358999999999864
|
| >d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: ATP(GTP)-binding protein PAB0955 species: Pyrococcus abyssi [TaxId: 29292]
Probab=99.53 E-value=2.5e-15 Score=101.29 Aligned_cols=107 Identities=16% Similarity=0.063 Sum_probs=64.6
Q ss_pred EEEEEEeCCCccccccccccc-----cccccEEEEEEeCCChhhhhh---HHHHHH-HHhhhcCCCCEEEEEeCCCCCcc
Q 030504 62 IRFYCWDTAGQEKFGGLRDGY-----YIHGQCAIIMFDVTARLTYKN---VPTWHR-DLCRVCENIPIVLCGNKVDVKNR 132 (176)
Q Consensus 62 ~~~~~~D~~g~~~~~~~~~~~-----~~~~~~~i~v~d~~~~~s~~~---~~~~~~-~~~~~~~~~p~liv~nK~Dl~~~ 132 (176)
..+.+.|+||+.......... ....+.+++++|+.....-+. ...... ...+. ..|.++++||.|+...
T Consensus 95 ~~~~~id~~g~~~~~~~~~~~~~~~~~~~~~~~v~vvd~~~~~~~~~~~~~~l~~~~~~~~~--~~~~ivvinK~D~~~~ 172 (244)
T d1yrba1 95 NDYVLIDTPGQMETFLFHEFGVRLMENLPYPLVVYISDPEILKKPNDYCFVRFFALLIDLRL--GATTIPALNKVDLLSE 172 (244)
T ss_dssp CSEEEEECCSSHHHHHHSHHHHHHHHTSSSCEEEEEECGGGCCSHHHHHHHHHHHHHHHHHH--TSCEEEEECCGGGCCH
T ss_pred cceeeeccccchhHHHHHHHHHHHHhhccCceEEEEeccccccCchhHhhHHHHHHHHHHHh--CCCceeeeeccccccH
Confidence 358889999987543222111 224568899999864322222 211111 11222 8899999999998763
Q ss_pred ccCHHHH----------------------------HHHHH--cCCeEEEeccCCCCChHHHHHHHHHH
Q 030504 133 QVKAKQV----------------------------TFHRK--KNLQYYEISAKSNYNFEKPFLYLARK 170 (176)
Q Consensus 133 ~~~~~~~----------------------------~~~~~--~~~~~~~~S~~~~~~v~~~~~~l~~~ 170 (176)
....... ..... ..++++.+||++|+|+++++..|.+.
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~vSa~~geGi~~L~~~l~e~ 240 (244)
T d1yrba1 173 EEKERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREGFEDLETLAYEH 240 (244)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSCCCCCEECCTTTCTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhCCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 2111100 00111 24689999999999999999988764
|
| >d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: LAO/AO transport system kinase ArgK species: Escherichia coli [TaxId: 562]
Probab=99.34 E-value=4.3e-12 Score=88.45 Aligned_cols=82 Identities=11% Similarity=-0.047 Sum_probs=50.2
Q ss_pred ccccccEEEEEEeCCChhhhhhHHHHHHHHhhhcCCCCEEEEEeCCCCCccccCHHH----HHHHHH-------cCCeEE
Q 030504 82 YYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQ----VTFHRK-------KNLQYY 150 (176)
Q Consensus 82 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~~~~~~~~~----~~~~~~-------~~~~~~ 150 (176)
....+|.+++|.++......+....-+..+ +=++|+||+|+......... ...... -..+++
T Consensus 164 i~~~aD~~l~v~~P~~Gd~iq~~k~gi~e~-------aDi~VvNKaD~~~~~~~~~~~~~~~~al~~~~~~~~~w~p~V~ 236 (327)
T d2p67a1 164 VARMVDCFISLQIAGGGDDLQGIKKGLMEV-------ADLIVINKDDGDNHTNVAIARHMYESALHILRRKYDEWQPRVL 236 (327)
T ss_dssp HHTTCSEEEEEECC------CCCCHHHHHH-------CSEEEECCCCTTCHHHHHHHHHHHHHHHHHSCCSBTTBCCEEE
T ss_pred hhhccceEEEEecCCCchhhhhhchhhhcc-------ccEEEEEeecccchHHHHHHHHHHHHHhhhcccCCCCCcceeE
Confidence 345689999999988776655554333222 44788899998864322211 111111 124799
Q ss_pred EeccCCCCChHHHHHHHHHH
Q 030504 151 EISAKSNYNFEKPFLYLARK 170 (176)
Q Consensus 151 ~~S~~~~~~v~~~~~~l~~~ 170 (176)
.|||.+|+|++++++.|.+.
T Consensus 237 ~~SA~~g~Gi~eL~~~I~~~ 256 (327)
T d2p67a1 237 TCSALEKRGIDEIWHAIIDF 256 (327)
T ss_dssp ECBGGGTBSHHHHHHHHHHH
T ss_pred EEEeeCCCCHHHHHHHHHHH
Confidence 99999999999999998764
|
| >d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Metallochaperone MeaB species: Methylobacterium extorquens [TaxId: 408]
Probab=99.28 E-value=1e-11 Score=86.45 Aligned_cols=100 Identities=9% Similarity=0.018 Sum_probs=58.5
Q ss_pred EEEEEEeCCCccccccccccccccccEEEEEEeCCChhhhhhHHHHHHHHhhhcCCCCEEEEEeCCCCCccccCH-HHH-
Q 030504 62 IRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKA-KQV- 139 (176)
Q Consensus 62 ~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~~~~~~~-~~~- 139 (176)
+.+.+++|.|.-.... ....-+|.+++|..+..++..+....-+. ..+=++|+||+|+.+..... ...
T Consensus 144 ~d~iiiETVG~gq~e~---~~~~~~D~~v~v~~p~~GD~iQ~~k~gil-------E~aDi~vvNKaD~~~~~~~~~~~~~ 213 (323)
T d2qm8a1 144 FDVILVETVGVGQSET---AVADLTDFFLVLMLPGAGDELQGIKKGIF-------ELADMIAVNKADDGDGERRASAAAS 213 (323)
T ss_dssp CCEEEEEECSSSSCHH---HHHTTSSEEEEEECSCC------CCTTHH-------HHCSEEEEECCSTTCCHHHHHHHHH
T ss_pred CCeEEEeehhhhhhhh---hhhcccceEEEEeeccchhhhhhhhhhHh-------hhhheeeEeccccccchHHHHHHHH
Confidence 4566677766432111 12345899999999988764433321111 22448889999987543222 221
Q ss_pred HHHHH----------cCCeEEEeccCCCCChHHHHHHHHHHH
Q 030504 140 TFHRK----------KNLQYYEISAKSNYNFEKPFLYLARKL 171 (176)
Q Consensus 140 ~~~~~----------~~~~~~~~S~~~~~~v~~~~~~l~~~i 171 (176)
.+... -..+++.+||++++|++++++++.+..
T Consensus 214 ~~~~~l~~~~~~~~~~~p~V~~~Sa~~g~Gi~el~~~I~~~~ 255 (323)
T d2qm8a1 214 EYRAALHILTPPSATWTPPVVTISGLHGKGLDSLWSRIEDHR 255 (323)
T ss_dssp HHHHHHTTBCCSBTTBCCCEEEEBTTTTBSHHHHHHHHHHHH
T ss_pred HHHHHhhcccccccCCCCceEEEEecCCCCHHHHHHHHHHHH
Confidence 11111 124799999999999999999997653
|
| >d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein PH0525 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=99.23 E-value=1.7e-10 Score=80.38 Aligned_cols=83 Identities=24% Similarity=0.254 Sum_probs=47.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCC-cc-----ccceeEEEeEEEEE----------------ecCcEEEEEEEeCCC
Q 030504 14 FKLVIVGDGGTGKTTFVKRHLTGEFEK-KY-----EPTIGVEVHPLDFF----------------TNCGKIRFYCWDTAG 71 (176)
Q Consensus 14 ~~i~i~G~~~~GKttl~~~~~~~~~~~-~~-----~~~~~~~~~~~~~~----------------~~~~~~~~~~~D~~g 71 (176)
++|.++|.|+||||||.|++.+.+... +| .|..|+.......+ .......+.++|+||
T Consensus 1 ~~v~lvG~pn~GKStlfn~lt~~~~~v~nypftT~~pn~Gv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~pG 80 (319)
T d1wxqa1 1 MEIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVAG 80 (319)
T ss_dssp CEEEEEECTTSSHHHHHHHHHC--------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC-
T ss_pred CcEeEECCCCCCHHHHHHHHHCCCCchhcCCCCcccCccceeeCCCCchhhhhhhccCccccccccccccccEEEEECCC
Confidence 489999999999999999976544321 11 22234333211111 112336799999999
Q ss_pred ccc-------cccccccccccccEEEEEEeCC
Q 030504 72 QEK-------FGGLRDGYYIHGQCAIIMFDVT 96 (176)
Q Consensus 72 ~~~-------~~~~~~~~~~~~~~~i~v~d~~ 96 (176)
.-. ........++.+|++++|+|+.
T Consensus 81 li~ga~~g~~~~~~~l~~i~~~d~ii~VVd~~ 112 (319)
T d1wxqa1 81 LVPGAHEGRGLGNKFLDDLRMASALIHVVDAT 112 (319)
T ss_dssp --------------CCCSSTTCSEEEEEEETT
T ss_pred cccchhcccchHHHHHHhhccceEEEEEeccc
Confidence 532 1222334467899999999986
|
| >d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.14 E-value=2.4e-10 Score=78.89 Aligned_cols=68 Identities=9% Similarity=0.070 Sum_probs=43.8
Q ss_pred EEEEEeCCCccccc-------------ccccccccccc-EEEEEEeCCChhhhhhHHHHHHHHhhhcCCCCEEEEEeCCC
Q 030504 63 RFYCWDTAGQEKFG-------------GLRDGYYIHGQ-CAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVD 128 (176)
Q Consensus 63 ~~~~~D~~g~~~~~-------------~~~~~~~~~~~-~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~liv~nK~D 128 (176)
.+.++|+||..... .+...|+...+ ++++|.++....+-.....+.+.+... ..++++|.||.|
T Consensus 126 ~l~liD~PG~~~~~~~~~~~~~~~~i~~~~~~y~~~~~~~il~v~~a~~~~~~~~~~~~~~~~~~~--~~r~i~Vltk~D 203 (299)
T d2akab1 126 NLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKIAKEVDPQ--GQRTIGVITKLD 203 (299)
T ss_dssp SEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHHHHHHHHCTT--CSSEEEEEECGG
T ss_pred CeeEEccCCccccccCCcchhHHHHHHHHHHHHhcCccceeeeecccccchhhhHHHHHHHHhCcC--CCceeeEEeccc
Confidence 37899999953221 22334455555 556677776665555555665555443 678999999999
Q ss_pred CCcc
Q 030504 129 VKNR 132 (176)
Q Consensus 129 l~~~ 132 (176)
..++
T Consensus 204 ~~~~ 207 (299)
T d2akab1 204 LMDE 207 (299)
T ss_dssp GSCT
T ss_pred cccc
Confidence 8754
|
| >d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Dictyostelium discoideum [TaxId: 44689]
Probab=99.04 E-value=5.8e-10 Score=77.19 Aligned_cols=68 Identities=12% Similarity=0.127 Sum_probs=42.9
Q ss_pred EEEEEeCCCcccc-------------ccccccccccccEEEEEE-eCCChhhhhhHHHHHHHHhhhcCCCCEEEEEeCCC
Q 030504 63 RFYCWDTAGQEKF-------------GGLRDGYYIHGQCAIIMF-DVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVD 128 (176)
Q Consensus 63 ~~~~~D~~g~~~~-------------~~~~~~~~~~~~~~i~v~-d~~~~~s~~~~~~~~~~~~~~~~~~p~liv~nK~D 128 (176)
.+.++|+||.... ......|+.+++.+++++ +......-.....+...+... ..++++|.||+|
T Consensus 132 ~l~iiDtPG~~~~~~~~~~~~~~~~~~~~~~~yi~~~~~~il~v~~~~~~~~~~~~~~~~~~~~~~--~~r~i~Vitk~D 209 (306)
T d1jwyb_ 132 NLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDLANSDALQLAKEVDPE--GKRTIGVITKLD 209 (306)
T ss_dssp SEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSCSTTCSHHHHHHHHCSS--CSSEEEEEECTT
T ss_pred CceEecCCCccccccCCcchhHHHHHHHHHHHHHhCCCceeEEeecccccccccHHHHHHHHhCcC--CCeEEEEEeccc
Confidence 4779999995422 234555677888766655 544444444555555555433 568999999999
Q ss_pred CCcc
Q 030504 129 VKNR 132 (176)
Q Consensus 129 l~~~ 132 (176)
..++
T Consensus 210 ~~~~ 213 (306)
T d1jwyb_ 210 LMDK 213 (306)
T ss_dssp SSCS
T ss_pred cccc
Confidence 8643
|
| >d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Haemophilus influenzae [TaxId: 727]
Probab=99.02 E-value=2e-10 Score=78.54 Aligned_cols=84 Identities=18% Similarity=0.029 Sum_probs=50.7
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCc------------E---EEEEEEeCCCcccc--
Q 030504 13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG------------K---IRFYCWDTAGQEKF-- 75 (176)
Q Consensus 13 ~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~---~~~~~~D~~g~~~~-- 75 (176)
.+||.+||.|+||||||.+++.........-|....+-....+.+.+. . ..+.+.|+||.-..
T Consensus 2 ~~~~GivG~Pn~GKSTlf~~lt~~~~~~~~ypf~ti~pn~gvv~v~d~r~~~l~~~~~~~~~~~a~i~~~Di~GLi~ga~ 81 (278)
T d1jala1 2 GFKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGAS 81 (278)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTHH
T ss_pred CceEEEECCCCCCHHHHHHHHHCCCCccccCCCCCCCCceEEEecccHhHHHHHHhcCCCceeeeeEEEEEccccCCCcc
Confidence 479999999999999999998765432211111111112222332221 1 25889999995322
Q ss_pred -----ccccccccccccEEEEEEeCC
Q 030504 76 -----GGLRDGYYIHGQCAIIMFDVT 96 (176)
Q Consensus 76 -----~~~~~~~~~~~~~~i~v~d~~ 96 (176)
.......++++|+++.|+|+.
T Consensus 82 ~g~Glg~~FL~~ir~~d~LihVVr~f 107 (278)
T d1jala1 82 KGEGLGNKFLANIRETDAIGHVVRCF 107 (278)
T ss_dssp HHGGGTCCHHHHHHTCSEEEEEEECS
T ss_pred cCCCccHHHHHHHHhccceEEEeecc
Confidence 223344578899999999863
|
| >d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=98.93 E-value=2.3e-09 Score=73.81 Aligned_cols=86 Identities=15% Similarity=0.060 Sum_probs=54.7
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHhcCCC--CCccccceeEEEeEEEEEecCc---------------EEEEEEEeCCCcc
Q 030504 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEF--EKKYEPTIGVEVHPLDFFTNCG---------------KIRFYCWDTAGQE 73 (176)
Q Consensus 11 ~~~~~i~i~G~~~~GKttl~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~D~~g~~ 73 (176)
...+||.++|.|+||||||.|++..... ..+|..| ..+-....+.+.+. ...+.+.|+||.-
T Consensus 8 ~~~~kiGivG~Pn~GKSTlfnalT~~~~~~~anypft-Ti~pn~g~v~v~d~r~~~l~~~~~~~~~~~~~i~~~DvaGLv 86 (296)
T d1ni3a1 8 GNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYA-TIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLT 86 (296)
T ss_dssp SSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSC-CCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHCCCCCCcCCCCcc-CccCCeEEEeccccchhhhhhcccCCceecccceeeeccccc
Confidence 3568999999999999999999775432 2222211 11111222333321 2468899999854
Q ss_pred ccc-------cccccccccccEEEEEEeCCC
Q 030504 74 KFG-------GLRDGYYIHGQCAIIMFDVTA 97 (176)
Q Consensus 74 ~~~-------~~~~~~~~~~~~~i~v~d~~~ 97 (176)
... ......++++|++++|+|+.+
T Consensus 87 ~gA~~g~GLGn~fL~~ir~~d~lihVV~~f~ 117 (296)
T d1ni3a1 87 KGASTGVGLGNAFLSHVRAVDAIYQVVRAFD 117 (296)
T ss_dssp CCCCSSSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred cccccccccHHHHHHHhhccceeEEEEeccC
Confidence 322 224445789999999999864
|
| >d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase YlqF species: Bacillus subtilis [TaxId: 1423]
Probab=98.93 E-value=9.7e-10 Score=74.83 Aligned_cols=61 Identities=20% Similarity=0.181 Sum_probs=37.1
Q ss_pred CCCCeeEEEEEcCCCCcHHHHHHHHhcCCCCCccccceeEEEeEEEEEecCcEEEEEEEeCCCcc
Q 030504 9 VDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73 (176)
Q Consensus 9 ~~~~~~~i~i~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~ 73 (176)
.....++|+|+|.|+||||||+|++.+.+ .....+..|.|.....+..+. .+.++||||.-
T Consensus 108 ~~~~~~~v~vvG~PNvGKSsliN~L~~~~-~~~~~~~pG~Tr~~~~i~~~~---~~~l~DTPGi~ 168 (273)
T d1puja_ 108 VKPRAIRALIIGIPNVGKSTLINRLAKKN-IAKTGDRPGITTSQQWVKVGK---ELELLDTPGIL 168 (273)
T ss_dssp CCCCCEEEEEEESTTSSHHHHHHHHHTSC-CC------------CCEEETT---TEEEEECCCCC
T ss_pred CCCCceEEEEEecCccchhhhhhhhhccc-eEEECCcccccccceEEECCC---CeEEecCCCcc
Confidence 34567999999999999999999966543 344566777777766554432 37899999953
|
| >d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase YlqF species: Bacillus subtilis [TaxId: 1423]
Probab=98.83 E-value=7.8e-09 Score=70.26 Aligned_cols=88 Identities=11% Similarity=0.076 Sum_probs=68.6
Q ss_pred ccccccccEEEEEEeCCChhhhhhHHHHHHHHhhhcCCCCEEEEEeCCCCCccccCHHHHHHHHHcCCeEEEeccCCCCC
Q 030504 80 DGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYN 159 (176)
Q Consensus 80 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~ 159 (176)
...+..+|++++|.|+.+|.+...- .+ .+...++|.++|+||+|+.+.....+..+.++..+...+.+|+.++.+
T Consensus 10 ~~~i~~~DvIl~V~DaR~P~ss~~~--~l---~~~~~~Kp~IlVlNK~DLv~~~~~~~w~~~f~~~~~~~i~isa~~~~~ 84 (273)
T d1puja_ 10 TEKLKLIDIVYELVDARIPMSSRNP--MI---EDILKNKPRIMLLNKADKADAAVTQQWKEHFENQGIRSLSINSVNGQG 84 (273)
T ss_dssp HHHGGGCSEEEEEEETTSTTTTSCH--HH---HHHCSSSCEEEEEECGGGSCHHHHHHHHHHHHTTTCCEEECCTTTCTT
T ss_pred HHHHHhCCEEEEEEECCCCCCCCCH--HH---HHHHcCCCeEEEEECccCCchHHHHHHHHHHHhcCCccceeecccCCC
Confidence 4457899999999999988655432 12 222248899999999999987766667777788889999999999999
Q ss_pred hHHHHHHHHHHHh
Q 030504 160 FEKPFLYLARKLA 172 (176)
Q Consensus 160 v~~~~~~l~~~i~ 172 (176)
..++..++.+.+.
T Consensus 85 ~~~~~~~~~~~l~ 97 (273)
T d1puja_ 85 LNQIVPASKEILQ 97 (273)
T ss_dssp GGGHHHHHHHHHH
T ss_pred ccccchhhhhhhh
Confidence 9888877765543
|
| >d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=98.79 E-value=1.7e-08 Score=66.11 Aligned_cols=87 Identities=15% Similarity=0.075 Sum_probs=63.8
Q ss_pred ccccccccEEEEEEeCCChh-hhhhHHHHHHHHhhhcCCCCEEEEEeCCCCCccccCHHHHHHHH--HcCCeEEEeccCC
Q 030504 80 DGYYIHGQCAIIMFDVTARL-TYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHR--KKNLQYYEISAKS 156 (176)
Q Consensus 80 ~~~~~~~~~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~~~~~~~~~~~~~~--~~~~~~~~~S~~~ 156 (176)
+....+.|.+++|+++.+|. +...+..++-..... +.|.++|+||+||.+.........+.. ..+.+++.+|+++
T Consensus 5 RP~vANiD~vliV~s~~~P~~~~~~ldR~Lv~a~~~--~i~pvIvlnK~DL~~~~~~~~~~~~~~~~~~~~~v~~vSa~~ 82 (225)
T d1u0la2 5 KPHVANVDQVILVVTVKMPETSTYIIDKFLVLAEKN--ELETVMVINKMDLYDEDDLRKVRELEEIYSGLYPIVKTSAKT 82 (225)
T ss_dssp TTTEESCCEEEEEECSSTTCCCHHHHHHHHHHHHHT--TCEEEEEECCGGGCCHHHHHHHHHHHHHHTTTSCEEECCTTT
T ss_pred CCCcccCCEEEEEEeCCCCCCCHHHHHHHHHHHHHc--CCCEEEEEeCcccCCHHHHHHHHHhhcccccceeEEEecccc
Confidence 33457889999999988764 445556666555554 999999999999987554433333333 2357899999999
Q ss_pred CCChHHHHHHHH
Q 030504 157 NYNFEKPFLYLA 168 (176)
Q Consensus 157 ~~~v~~~~~~l~ 168 (176)
+.|++++.+++.
T Consensus 83 ~~g~~~L~~~l~ 94 (225)
T d1u0la2 83 GMGIEELKEYLK 94 (225)
T ss_dssp CTTHHHHHHHHS
T ss_pred chhHhhHHHHhc
Confidence 999999888763
|
| >d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Bacillus subtilis [TaxId: 1423]
Probab=98.57 E-value=2.2e-08 Score=65.76 Aligned_cols=85 Identities=13% Similarity=0.095 Sum_probs=63.2
Q ss_pred cccccccEEEEEEeCCChh-hhhhHHHHHHHHhhhcCCCCEEEEEeCCCCCccccCHH----HHHHHHHcCCeEEEeccC
Q 030504 81 GYYIHGQCAIIMFDVTARL-TYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAK----QVTFHRKKNLQYYEISAK 155 (176)
Q Consensus 81 ~~~~~~~~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~~~~~~~~----~~~~~~~~~~~~~~~S~~ 155 (176)
....+.|.+++|+++.+|. +...+..++-..... +.+.++|+||+||.+.....+ ..+.+...+++++.+|++
T Consensus 6 P~vANiD~~~iV~s~~~P~~~~~~idR~Lv~a~~~--~i~pvIvlnK~DL~~~~~~~~~~~~~~~~y~~~g~~v~~~Sa~ 83 (231)
T d1t9ha2 6 PPICNVDQAVLVFSAVQPSFSTALLDRFLVLVEAN--DIQPIICITKMDLIEDQDTEDTIQAYAEDYRNIGYDVYLTSSK 83 (231)
T ss_dssp TTEECCCEEEEEEESTTTTCCHHHHHHHHHHHHTT--TCEEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTCCEEECCHH
T ss_pred CCccccCEEEEEEECCCCCCCHHHHHHHHHHHHHc--CCCEEEEEecccccccHHHHHHHHHHHHHHhhccccceeeecC
Confidence 3456889999999998764 555666666555554 889999999999976443222 234456678999999999
Q ss_pred CCCChHHHHHHH
Q 030504 156 SNYNFEKPFLYL 167 (176)
Q Consensus 156 ~~~~v~~~~~~l 167 (176)
++.|++++..++
T Consensus 84 ~~~gl~~L~~~l 95 (231)
T d1t9ha2 84 DQDSLADIIPHF 95 (231)
T ss_dssp HHTTCTTTGGGG
T ss_pred ChhHHHHHHHhh
Confidence 999998877655
|
| >d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=98.53 E-value=3.4e-08 Score=64.62 Aligned_cols=59 Identities=17% Similarity=0.161 Sum_probs=34.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCc------cccceeEEEeEEEEEecCcEEEEEEEeCCCcccc
Q 030504 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKK------YEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKF 75 (176)
Q Consensus 14 ~~i~i~G~~~~GKttl~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~ 75 (176)
-..+++|++|||||||+|++........ ......+|.....+..+..+ .++||||...+
T Consensus 96 kt~~~~G~SGVGKSTLiN~L~~~~~~~T~~vs~~~~rGrHTTt~~~l~~l~~gg---~iiDTPG~r~~ 160 (225)
T d1u0la2 96 KISTMAGLSGVGKSSLLNAINPGLKLRVSEVSEKLQRGRHTTTTAQLLKFDFGG---YVVDTPGFANL 160 (225)
T ss_dssp SEEEEECSTTSSHHHHHHHHSTTCCCC-------------CCCSCCEEECTTSC---EEESSCSSTTC
T ss_pred CeEEEECCCCCCHHHHHHhhcchhhhhccCcccccCCCCccccceeEEEECCCc---EEEeCCccccc
Confidence 3579999999999999999764332211 11112233344444444333 57899997654
|
| >d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermus aquaticus [TaxId: 271]
Probab=98.53 E-value=1.4e-07 Score=61.09 Aligned_cols=101 Identities=10% Similarity=0.038 Sum_probs=58.1
Q ss_pred EEEEEEeCCCccccccc----cccc--------cccccEEEEEEeCCChh-hhhhHHHHHHHHhhhcCCCCEEEEEeCCC
Q 030504 62 IRFYCWDTAGQEKFGGL----RDGY--------YIHGQCAIIMFDVTARL-TYKNVPTWHRDLCRVCENIPIVLCGNKVD 128 (176)
Q Consensus 62 ~~~~~~D~~g~~~~~~~----~~~~--------~~~~~~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~p~liv~nK~D 128 (176)
+.+.++||+|....... ...+ ....+-.++|.|++... ....+...+..+ +.. -++.||.|
T Consensus 89 ~d~ilIDTaGr~~~d~~l~~el~~~~~~~~~~~~~~p~~~~LVl~a~~~~~~~~~~~~~~~~~-----~~~-~lI~TKlD 162 (207)
T d1okkd2 89 YDLLFVDTAGRLHTKHNLMEELKKVKRAIAKADPEEPKEVWLVLDAVTGQNGLEQAKKFHEAV-----GLT-GVIVTKLD 162 (207)
T ss_dssp CSEEEECCCCCCTTCHHHHHHHHHHHHHHHHHCTTCCSEEEEEEETTBCTHHHHHHHHHHHHH-----CCS-EEEEECTT
T ss_pred CCEEEcCccccchhhHHHHHHHHHHHHHhhhcccCCCceEEEEeecccCchHHHHHHHhhhcc-----CCc-eEEEeccC
Confidence 46789999996543321 1111 12457789999988654 333333333322 333 34679999
Q ss_pred CCccccCHHHHHHHHHcCCeEEEeccCCCCChHHHH----HHHHHHHh
Q 030504 129 VKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPF----LYLARKLA 172 (176)
Q Consensus 129 l~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~----~~l~~~i~ 172 (176)
-..+ .-.........++++..++ +|++.+++. +++++.+.
T Consensus 163 et~~--~G~~l~~~~~~~~Pi~~i~--~Gq~p~Dl~~~~~~~l~~~ll 206 (207)
T d1okkd2 163 GTAK--GGVLIPIVRTLKVPIKFVG--VGEGPDDLQPFDPEAFVEALL 206 (207)
T ss_dssp SSCC--CTTHHHHHHHHCCCEEEEE--CSSSTTCEEECCHHHHHHHHT
T ss_pred CCCC--ccHHHHHHHHHCCCEEEEe--CCCChHhCccCCHHHHHHHHh
Confidence 7543 2345677778888877776 466655443 44444443
|
| >d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Archaeon Acidianus ambivalens [TaxId: 2283]
Probab=98.48 E-value=1.8e-07 Score=60.67 Aligned_cols=92 Identities=12% Similarity=0.103 Sum_probs=54.8
Q ss_pred EEEEEEeCCCcccccc--c----cccc--cccccEEEEEEeCCChhhhhhHHHHHHHHhhhcCCCCEEEEEeCCCCCccc
Q 030504 62 IRFYCWDTAGQEKFGG--L----RDGY--YIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQ 133 (176)
Q Consensus 62 ~~~~~~D~~g~~~~~~--~----~~~~--~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~~~~ 133 (176)
..+.++||+|...+.. . ...+ ....+-.++|.+++... +....... ..+. -.+--++.||.|-..+.
T Consensus 95 ~d~IlIDTaGr~~~~~~~~~~~el~~~~~~~~~~~~~LVl~a~~~~--~~~~~~~~-~~~~--~~~~~lI~TKlDet~~~ 169 (211)
T d1j8yf2 95 MEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIGQ--KAYDLASK-FNQA--SKIGTIIITKMDGTAKG 169 (211)
T ss_dssp CSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGGG--GHHHHHHH-HHHH--CTTEEEEEECTTSCSCH
T ss_pred CceEEEecCCcCccchhhHHHHHHHHHHhhcCCceEEEEEecccCc--chHHHHhh-hhcc--cCcceEEEecccCCCcc
Confidence 4688999999654332 1 1111 12356788999987653 22222111 1121 22334668999986543
Q ss_pred cCHHHHHHHHHcCCeEEEeccCCCCChHH
Q 030504 134 VKAKQVTFHRKKNLQYYEISAKSNYNFEK 162 (176)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~S~~~~~~v~~ 162 (176)
-.........++++..++ .|+++++
T Consensus 170 --G~~l~~~~~~~lPi~~it--~Gq~v~D 194 (211)
T d1j8yf2 170 --GGALSAVAATGATIKFIG--TGEKIDE 194 (211)
T ss_dssp --HHHHHHHHTTTCCEEEEE--CSSSTTC
T ss_pred --cHHHHHHHHHCcCEEEEe--CCCCccc
Confidence 456788888899988887 5777755
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Probab=98.46 E-value=4.4e-06 Score=52.41 Aligned_cols=22 Identities=45% Similarity=0.827 Sum_probs=19.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 030504 14 FKLVIVGDGGTGKTTFVKRHLT 35 (176)
Q Consensus 14 ~~i~i~G~~~~GKttl~~~~~~ 35 (176)
+||+|+|++|+|||||++.++.
T Consensus 1 ~ki~I~G~~G~GKSTLl~~i~~ 22 (178)
T d1ye8a1 1 MKIIITGEPGVGKTTLVKKIVE 22 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCcHHHHHHHHHHh
Confidence 4899999999999999998653
|
| >d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermotoga maritima [TaxId: 2336]
Probab=98.34 E-value=1e-06 Score=57.18 Aligned_cols=91 Identities=14% Similarity=0.046 Sum_probs=53.1
Q ss_pred EEEEEEeCCCccccccc-c---ccc---c-----ccccEEEEEEeCCChh-hhhhHHHHHHHHhhhcCCCCEEEEEeCCC
Q 030504 62 IRFYCWDTAGQEKFGGL-R---DGY---Y-----IHGQCAIIMFDVTARL-TYKNVPTWHRDLCRVCENIPIVLCGNKVD 128 (176)
Q Consensus 62 ~~~~~~D~~g~~~~~~~-~---~~~---~-----~~~~~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~p~liv~nK~D 128 (176)
+.+.++||+|....... . ..+ . ...+-.++|.|++... ....+...+ ... + +-=++.||.|
T Consensus 94 ~d~ilIDTaGr~~~d~~~~~el~~~~~~~~~~~~~~p~~~~LVl~a~~~~~~~~~~~~~~---~~~--~-~~~lI~TKlD 167 (213)
T d1vmaa2 94 KDVVIIDTAGRLHTKKNLMEELRKVHRVVKKKIPDAPHETLLVIDATTGQNGLVQAKIFK---EAV--N-VTGIILTKLD 167 (213)
T ss_dssp CSEEEEEECCCCSCHHHHHHHHHHHHHHGGGTCTTCCSEEEEEEEGGGHHHHHHHHHHHH---HHS--C-CCEEEEECGG
T ss_pred CCEEEEeccccccchHHHHHHHHHHHhhhhhccccccceeEEeeccccCcchhhhhhhhc---ccc--C-CceEEEeccc
Confidence 45789999995433221 1 111 1 1246788999987543 222222222 211 3 3345679999
Q ss_pred CCccccCHHHHHHHHHcCCeEEEeccCCCCChHH
Q 030504 129 VKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEK 162 (176)
Q Consensus 129 l~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~ 162 (176)
-..+ .-.........+.|+..++ +|+++++
T Consensus 168 e~~~--~G~~l~~~~~~~~Pi~~i~--~Gq~v~D 197 (213)
T d1vmaa2 168 GTAK--GGITLAIARELGIPIKFIG--VGEKAED 197 (213)
T ss_dssp GCSC--TTHHHHHHHHHCCCEEEEE--CSSSGGG
T ss_pred CCCc--ccHHHHHHHHHCCCEEEEe--CCCCccc
Confidence 7533 2356778888888888876 5777755
|
| >d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Bacillus subtilis [TaxId: 1423]
Probab=98.30 E-value=1e-07 Score=62.45 Aligned_cols=23 Identities=22% Similarity=0.382 Sum_probs=19.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcC
Q 030504 14 FKLVIVGDGGTGKTTFVKRHLTG 36 (176)
Q Consensus 14 ~~i~i~G~~~~GKttl~~~~~~~ 36 (176)
-..+++|++|||||||+|+++..
T Consensus 98 ~~~vl~G~SGVGKSSLiN~L~~~ 120 (231)
T d1t9ha2 98 KTTVFAGQSGVGKSSLLNAISPE 120 (231)
T ss_dssp SEEEEEESHHHHHHHHHHHHCC-
T ss_pred ceEEEECCCCccHHHHHHhhccH
Confidence 35689999999999999997653
|
| >d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Escherichia coli [TaxId: 562]
Probab=98.26 E-value=9.9e-07 Score=57.08 Aligned_cols=91 Identities=12% Similarity=0.073 Sum_probs=53.6
Q ss_pred EEEEEEeCCCccccccc----ccc---cc-----ccccEEEEEEeCCChh-hhhhHHHHHHHHhhhcCCCCEEEEEeCCC
Q 030504 62 IRFYCWDTAGQEKFGGL----RDG---YY-----IHGQCAIIMFDVTARL-TYKNVPTWHRDLCRVCENIPIVLCGNKVD 128 (176)
Q Consensus 62 ~~~~~~D~~g~~~~~~~----~~~---~~-----~~~~~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~p~liv~nK~D 128 (176)
+.+.++||+|....... ... .. ...+-.++|.|++... ....+...+..+ + +--++.||.|
T Consensus 92 ~d~ilIDTaGr~~~d~~~~~el~~l~~~~~~~~~~~p~~~~LVl~a~~~~~~~~~~~~~~~~~-----~-~~~lIlTKlD 165 (211)
T d2qy9a2 92 IDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQNAVSQAKLFHEAV-----G-LTGITLTKLD 165 (211)
T ss_dssp CSEEEECCCCCGGGHHHHHHHHHHHHHHHTTTCTTCCSEEEEEEEGGGTHHHHHHHHHHHHHS-----C-CCEEEEECCT
T ss_pred CCEEEeccCCCccccHHHHHHHHHHHHHHhhhcccCcceeeeehhcccCcchHHHHhhhhhcc-----C-CceEEEeecC
Confidence 45789999995332110 111 11 1246888999987543 222222222221 3 3345679999
Q ss_pred CCccccCHHHHHHHHHcCCeEEEeccCCCCChHH
Q 030504 129 VKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEK 162 (176)
Q Consensus 129 l~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~ 162 (176)
-..+. -.........++++..++ .|+++++
T Consensus 166 e~~~~--G~~l~~~~~~~~Pi~~i~--~Gq~v~D 195 (211)
T d2qy9a2 166 GTAKG--GVIFSVADQFGIPIRYIG--VGERIED 195 (211)
T ss_dssp TCTTT--THHHHHHHHHCCCEEEEE--CSSSGGG
T ss_pred CCCCc--cHHHHHHHHHCCCEEEEe--CCCCccc
Confidence 85543 456777888899988886 6777754
|
| >d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Hypothetical protein YjiA, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=98.09 E-value=1.8e-05 Score=51.67 Aligned_cols=21 Identities=33% Similarity=0.502 Sum_probs=18.6
Q ss_pred EEEEcCCCCcHHHHHHHHhcC
Q 030504 16 LVIVGDGGTGKTTFVKRHLTG 36 (176)
Q Consensus 16 i~i~G~~~~GKttl~~~~~~~ 36 (176)
.+|.|.-|||||||+++++..
T Consensus 6 ~iitGFLGaGKTTll~~lL~~ 26 (222)
T d1nija1 6 TLLTGFLGAGKTTLLRHILNE 26 (222)
T ss_dssp EEEEESSSSSCHHHHHHHHHS
T ss_pred EEEeeCCCCCHHHHHHHHHhc
Confidence 578899999999999998864
|
| >d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Probable kinase LmjF30.1890 species: Leishmania major [TaxId: 5664]
Probab=98.07 E-value=1.3e-06 Score=54.71 Aligned_cols=26 Identities=27% Similarity=0.441 Sum_probs=22.6
Q ss_pred CCCeeEEEEEcCCCCcHHHHHHHHhc
Q 030504 10 DYPSFKLVIVGDGGTGKTTFVKRHLT 35 (176)
Q Consensus 10 ~~~~~~i~i~G~~~~GKttl~~~~~~ 35 (176)
.|+..+|+|.|++||||||+.+.+..
T Consensus 2 ~pk~~~I~i~G~~GsGKTT~~~~La~ 27 (174)
T d1y63a_ 2 QPKGINILITGTPGTGKTSMAEMIAA 27 (174)
T ss_dssp CCSSCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCCCEEEEEeCCCCCHHHHHHHHHH
Confidence 35789999999999999999998653
|
| >d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Thermus aquaticus [TaxId: 271]
Probab=98.06 E-value=5.8e-06 Score=53.35 Aligned_cols=85 Identities=13% Similarity=0.074 Sum_probs=49.5
Q ss_pred EEEEEEeCCCccccccccc----cc--cccccEEEEEEeCCChhhhhhHHHHHHHHhhhcCCCCEEEEEeCCCCCccccC
Q 030504 62 IRFYCWDTAGQEKFGGLRD----GY--YIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVK 135 (176)
Q Consensus 62 ~~~~~~D~~g~~~~~~~~~----~~--~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~~~~~~ 135 (176)
..+.++||+|......... .+ ..+.+-.++|.|++....-. .......+.. +.. =++.||.|-..+ .
T Consensus 93 ~d~vlIDTaGr~~~d~~~~~el~~~~~~~~~~~~llv~~a~~~~~~~---~~~~~f~~~~-~~~-~~I~TKlDe~~~--~ 165 (207)
T d1ls1a2 93 RDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTGQEAL---SVARAFDEKV-GVT-GLVLTKLDGDAR--G 165 (207)
T ss_dssp CCEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGTHHHH---HHHHHHHHHT-CCC-EEEEECGGGCSS--C
T ss_pred CcceeecccccchhhhhhHHHHHHHHhhcCCceEEEEeccccchhHH---HHHHHHHhhC-CCC-eeEEeecCcccc--c
Confidence 4678999999654332111 11 23567889999987664221 1222222211 222 356799996443 3
Q ss_pred HHHHHHHHHcCCeEEEec
Q 030504 136 AKQVTFHRKKNLQYYEIS 153 (176)
Q Consensus 136 ~~~~~~~~~~~~~~~~~S 153 (176)
-.........+.|+..++
T Consensus 166 G~~l~~~~~~~~Pi~~i~ 183 (207)
T d1ls1a2 166 GAALSARHVTGKPIYFAG 183 (207)
T ss_dssp HHHHHHHHHHCCCEEEEC
T ss_pred hHHHHHHHHHCCCEEEEe
Confidence 456778888888877765
|
| >d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain species: Haemophilus influenzae [TaxId: 727]
Probab=98.02 E-value=1.2e-06 Score=55.36 Aligned_cols=24 Identities=21% Similarity=0.380 Sum_probs=20.7
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHhc
Q 030504 12 PSFKLVIVGDGGTGKTTFVKRHLT 35 (176)
Q Consensus 12 ~~~~i~i~G~~~~GKttl~~~~~~ 35 (176)
..-+|+|.|++|+|||||++++..
T Consensus 6 ~~K~I~i~G~~GsGKTTla~~La~ 29 (192)
T d1lw7a2 6 FAKTVAILGGESSGKSVLVNKLAA 29 (192)
T ss_dssp TCEEEEEECCTTSHHHHHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHH
Confidence 346899999999999999999653
|
| >d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]
Probab=97.94 E-value=2e-06 Score=53.61 Aligned_cols=23 Identities=30% Similarity=0.427 Sum_probs=20.0
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhc
Q 030504 13 SFKLVIVGDGGTGKTTFVKRHLT 35 (176)
Q Consensus 13 ~~~i~i~G~~~~GKttl~~~~~~ 35 (176)
..||+++|++||||||+.+++..
T Consensus 4 ~~~I~i~G~pGsGKTTia~~La~ 26 (173)
T d1rkba_ 4 LPNILLTGTPGVGKTTLGKELAS 26 (173)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999998653
|
| >d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]
Probab=97.94 E-value=2.9e-06 Score=54.04 Aligned_cols=24 Identities=25% Similarity=0.356 Sum_probs=21.2
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHh
Q 030504 11 YPSFKLVIVGDGGTGKTTFVKRHL 34 (176)
Q Consensus 11 ~~~~~i~i~G~~~~GKttl~~~~~ 34 (176)
|+.+||+++|+|||||||+...+.
T Consensus 1 p~~~riil~G~pGSGKsT~a~~La 24 (190)
T d1ak2a1 1 PKGVRAVLLGPPGAGKGTQAPKLA 24 (190)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHH
T ss_pred CCccEEEEECCCCCCHHHHHHHHH
Confidence 456899999999999999999855
|
| >d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Escherichia coli [TaxId: 562]
Probab=97.90 E-value=2.8e-06 Score=52.83 Aligned_cols=20 Identities=40% Similarity=0.592 Sum_probs=18.4
Q ss_pred EEEEcCCCCcHHHHHHHHhc
Q 030504 16 LVIVGDGGTGKTTFVKRHLT 35 (176)
Q Consensus 16 i~i~G~~~~GKttl~~~~~~ 35 (176)
|+|+|.+|||||||++++..
T Consensus 5 i~itG~~GSGKTTL~~~L~~ 24 (170)
T d1np6a_ 5 LAFAAWSGTGKTTLLKKLIP 24 (170)
T ss_dssp EEEECCTTSCHHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHHH
Confidence 88999999999999999764
|
| >d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.87 E-value=7.1e-06 Score=51.46 Aligned_cols=28 Identities=36% Similarity=0.516 Sum_probs=23.5
Q ss_pred CCCCCCeeEEEEEcCCCCcHHHHHHHHh
Q 030504 7 QTVDYPSFKLVIVGDGGTGKTTFVKRHL 34 (176)
Q Consensus 7 ~~~~~~~~~i~i~G~~~~GKttl~~~~~ 34 (176)
+...+.+.=|+++|.+||||||++.++.
T Consensus 8 ~~~~~~p~liil~G~pGsGKST~a~~l~ 35 (172)
T d1yj5a2 8 SLLSPNPEVVVAVGFPGAGKSTFIQEHL 35 (172)
T ss_dssp CSSCSSCCEEEEECCTTSSHHHHHHHHT
T ss_pred ccCCCCCEEEEEECCCCCCHHHHHHHHH
Confidence 4455667789999999999999999875
|
| >d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=97.83 E-value=4.9e-06 Score=52.46 Aligned_cols=21 Identities=33% Similarity=0.550 Sum_probs=18.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHh
Q 030504 14 FKLVIVGDGGTGKTTFVKRHL 34 (176)
Q Consensus 14 ~~i~i~G~~~~GKttl~~~~~ 34 (176)
+||+|+|+|||||||++..+.
T Consensus 1 m~I~i~G~pGSGKsT~a~~La 21 (182)
T d1zina1 1 MNLVLMGLPGAGKGTQAEKIV 21 (182)
T ss_dssp CEEEEECSTTSSHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 479999999999999999754
|
| >d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]
Probab=97.83 E-value=6.1e-06 Score=52.56 Aligned_cols=25 Identities=28% Similarity=0.381 Sum_probs=21.8
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHhc
Q 030504 11 YPSFKLVIVGDGGTGKTTFVKRHLT 35 (176)
Q Consensus 11 ~~~~~i~i~G~~~~GKttl~~~~~~ 35 (176)
.+.+||+|+|+|||||||+...+..
T Consensus 4 ~r~mrIiliG~PGSGKtT~a~~La~ 28 (189)
T d2ak3a1 4 ARLLRAAIMGAPGSGKGTVSSRITK 28 (189)
T ss_dssp SCCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcceeEEEECCCCCCHHHHHHHHHH
Confidence 3568999999999999999998654
|
| >d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Polynucleotide kinase, kinase domain species: Bacteriophage T4 [TaxId: 10665]
Probab=97.81 E-value=5.3e-06 Score=50.66 Aligned_cols=20 Identities=25% Similarity=0.682 Sum_probs=17.9
Q ss_pred EEEEcCCCCcHHHHHHHHhc
Q 030504 16 LVIVGDGGTGKTTFVKRHLT 35 (176)
Q Consensus 16 i~i~G~~~~GKttl~~~~~~ 35 (176)
|++.|++||||||+++++..
T Consensus 5 Iii~G~pGsGKTTla~~L~~ 24 (152)
T d1ly1a_ 5 ILTIGCPGSGKSTWAREFIA 24 (152)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 78899999999999998754
|
| >d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Maize (Zea mays) [TaxId: 4577]
Probab=97.78 E-value=6.3e-06 Score=52.40 Aligned_cols=22 Identities=27% Similarity=0.335 Sum_probs=19.6
Q ss_pred eeEEEEEcCCCCcHHHHHHHHh
Q 030504 13 SFKLVIVGDGGTGKTTFVKRHL 34 (176)
Q Consensus 13 ~~~i~i~G~~~~GKttl~~~~~ 34 (176)
+.+|+|+|++||||||++..+.
T Consensus 3 Pm~I~i~GppGsGKsT~a~~La 24 (189)
T d1zaka1 3 PLKVMISGAPASGKGTQCELIK 24 (189)
T ss_dssp SCCEEEEESTTSSHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 4689999999999999999854
|
| >d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.76 E-value=7.3e-06 Score=51.70 Aligned_cols=21 Identities=24% Similarity=0.487 Sum_probs=19.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHh
Q 030504 14 FKLVIVGDGGTGKTTFVKRHL 34 (176)
Q Consensus 14 ~~i~i~G~~~~GKttl~~~~~ 34 (176)
+||+|+|+|||||||+...+.
T Consensus 1 m~I~i~G~pGsGKsT~a~~La 21 (181)
T d2cdna1 1 MRVLLLGPPGAGKGTQAVKLA 21 (181)
T ss_dssp CEEEEECCTTSSHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 589999999999999999865
|
| >d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus globisporus [TaxId: 1459]
Probab=97.76 E-value=7.7e-06 Score=51.66 Aligned_cols=22 Identities=32% Similarity=0.525 Sum_probs=19.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 030504 14 FKLVIVGDGGTGKTTFVKRHLT 35 (176)
Q Consensus 14 ~~i~i~G~~~~GKttl~~~~~~ 35 (176)
+||+|+|+|||||||++..+..
T Consensus 1 M~I~i~G~pGSGKsT~a~~La~ 22 (182)
T d1s3ga1 1 MNIVLMGLPGAGKGTQADRIVE 22 (182)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4899999999999999998553
|
| >d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ATP sulfurylase C-terminal domain domain: ATP sulfurylase C-terminal domain species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=97.76 E-value=1.1e-05 Score=50.36 Aligned_cols=25 Identities=16% Similarity=0.310 Sum_probs=21.1
Q ss_pred CCCeeEEEEEcCCCCcHHHHHHHHh
Q 030504 10 DYPSFKLVIVGDGGTGKTTFVKRHL 34 (176)
Q Consensus 10 ~~~~~~i~i~G~~~~GKttl~~~~~ 34 (176)
..+.+-|.++|.+||||||+...+.
T Consensus 3 ~~~g~~I~l~G~~GsGKTTia~~La 27 (183)
T d1m8pa3 3 ATQGFTIFLTGYMNSGKDAIARALQ 27 (183)
T ss_dssp TTCCEEEEEECSTTSSHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHH
Confidence 4456789999999999999998754
|
| >d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase-like domain of Cask species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.73 E-value=6.6e-06 Score=51.92 Aligned_cols=20 Identities=30% Similarity=0.594 Sum_probs=18.3
Q ss_pred EEEEcCCCCcHHHHHHHHhc
Q 030504 16 LVIVGDGGTGKTTFVKRHLT 35 (176)
Q Consensus 16 i~i~G~~~~GKttl~~~~~~ 35 (176)
|+|+|++|+||+||+++++.
T Consensus 6 ivl~Gpsg~GK~tl~~~L~~ 25 (178)
T d1kgda_ 6 LVLLGAHGVGRRHIKNTLIT 25 (178)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 89999999999999999764
|
| >d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.73 E-value=9.7e-06 Score=51.11 Aligned_cols=22 Identities=32% Similarity=0.522 Sum_probs=19.9
Q ss_pred eeEEEEEcCCCCcHHHHHHHHh
Q 030504 13 SFKLVIVGDGGTGKTTFVKRHL 34 (176)
Q Consensus 13 ~~~i~i~G~~~~GKttl~~~~~ 34 (176)
.+||+|+|++||||||+...+.
T Consensus 2 ~mrIvl~G~pGSGKtT~a~~La 23 (180)
T d1akya1 2 SIRMVLIGPPGAGKGTQAPNLQ 23 (180)
T ss_dssp CCEEEEECCTTSSHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHH
Confidence 4789999999999999999865
|
| >d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Escherichia coli [TaxId: 562]
Probab=97.71 E-value=9.2e-06 Score=51.11 Aligned_cols=21 Identities=19% Similarity=0.389 Sum_probs=18.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHh
Q 030504 14 FKLVIVGDGGTGKTTFVKRHL 34 (176)
Q Consensus 14 ~~i~i~G~~~~GKttl~~~~~ 34 (176)
+||+|+|+|||||||....+.
T Consensus 1 m~I~i~G~pGSGKsT~~~~La 21 (179)
T d1e4va1 1 MRIILLGAPVAGKGTQAQFIM 21 (179)
T ss_dssp CEEEEEESTTSSHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 489999999999999998864
|
| >d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein BH3686 species: Bacillus halodurans [TaxId: 86665]
Probab=97.71 E-value=9.3e-06 Score=50.46 Aligned_cols=20 Identities=40% Similarity=0.574 Sum_probs=17.9
Q ss_pred EEEEEcCCCCcHHHHHHHHh
Q 030504 15 KLVIVGDGGTGKTTFVKRHL 34 (176)
Q Consensus 15 ~i~i~G~~~~GKttl~~~~~ 34 (176)
-|++.|++||||||+++++.
T Consensus 4 lI~i~G~~GsGKTTva~~L~ 23 (176)
T d2bdta1 4 LYIITGPAGVGKSTTCKRLA 23 (176)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 38999999999999999865
|
| >d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Dictyostelium discoideum [TaxId: 44689]
Probab=97.71 E-value=1.3e-05 Score=51.03 Aligned_cols=24 Identities=21% Similarity=0.320 Sum_probs=20.4
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHhc
Q 030504 12 PSFKLVIVGDGGTGKTTFVKRHLT 35 (176)
Q Consensus 12 ~~~~i~i~G~~~~GKttl~~~~~~ 35 (176)
++..|+|+|+|||||||++.++..
T Consensus 5 kp~iI~i~G~pGSGKsT~a~~La~ 28 (194)
T d1qf9a_ 5 KPNVVFVLGGPGSGKGTQCANIVR 28 (194)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 346789999999999999998653
|
| >d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Escherichia coli [TaxId: 562]
Probab=97.70 E-value=9.2e-06 Score=49.98 Aligned_cols=20 Identities=30% Similarity=0.536 Sum_probs=18.2
Q ss_pred EEEEEcCCCCcHHHHHHHHh
Q 030504 15 KLVIVGDGGTGKTTFVKRHL 34 (176)
Q Consensus 15 ~i~i~G~~~~GKttl~~~~~ 34 (176)
+|+++|++||||||+.+.+.
T Consensus 4 ~I~l~G~~GsGKSTvak~La 23 (169)
T d1kaga_ 4 NIFLVGPMGAGKSTIGRQLA 23 (169)
T ss_dssp CEEEECCTTSCHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHH
Confidence 69999999999999999855
|
| >d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Bacillus stearothermophilus [TaxId: 1422]
Probab=97.69 E-value=1e-05 Score=50.21 Aligned_cols=20 Identities=30% Similarity=0.518 Sum_probs=17.4
Q ss_pred EEEEcCCCCcHHHHHHHHhc
Q 030504 16 LVIVGDGGTGKTTFVKRHLT 35 (176)
Q Consensus 16 i~i~G~~~~GKttl~~~~~~ 35 (176)
+.|+|.+|||||||+++++.
T Consensus 4 i~I~G~~gSGKTTli~~l~~ 23 (165)
T d1xjca_ 4 WQVVGYKHSGKTTLMEKWVA 23 (165)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEEeCCCCCHHHHHHHHHH
Confidence 35999999999999999753
|
| >d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.64 E-value=1.1e-05 Score=50.06 Aligned_cols=20 Identities=45% Similarity=0.609 Sum_probs=17.8
Q ss_pred EEEEEcCCCCcHHHHHHHHh
Q 030504 15 KLVIVGDGGTGKTTFVKRHL 34 (176)
Q Consensus 15 ~i~i~G~~~~GKttl~~~~~ 34 (176)
||+++|++||||||+.+.+.
T Consensus 3 ~IvliG~~G~GKSTig~~La 22 (165)
T d2iyva1 3 KAVLVGLPGSGKSTIGRRLA 22 (165)
T ss_dssp SEEEECSTTSSHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHH
Confidence 68999999999999988754
|
| >d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Cancer-related NTPase, C1orf57 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.61 E-value=1.5e-05 Score=50.05 Aligned_cols=21 Identities=29% Similarity=0.578 Sum_probs=18.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 030504 15 KLVIVGDGGTGKTTFVKRHLT 35 (176)
Q Consensus 15 ~i~i~G~~~~GKttl~~~~~~ 35 (176)
.|+|.|++|+|||||+.++..
T Consensus 3 ~v~ItG~~GtGKTtl~~~i~~ 23 (189)
T d2i3ba1 3 HVFLTGPPGVGKTTLIHKASE 23 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHH
Confidence 589999999999999998663
|
| >d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.61 E-value=8.3e-06 Score=51.78 Aligned_cols=20 Identities=45% Similarity=0.813 Sum_probs=18.2
Q ss_pred EEEEcCCCCcHHHHHHHHhc
Q 030504 16 LVIVGDGGTGKTTFVKRHLT 35 (176)
Q Consensus 16 i~i~G~~~~GKttl~~~~~~ 35 (176)
|+|+|++|||||||+++++.
T Consensus 4 Ivl~GpsG~GK~tl~~~L~~ 23 (186)
T d1gkya_ 4 IVISGPSGTGKSTLLKKLFA 23 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 89999999999999998654
|
| >d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Campylobacter jejuni [TaxId: 197]
Probab=97.61 E-value=1.5e-05 Score=49.34 Aligned_cols=20 Identities=30% Similarity=0.546 Sum_probs=17.9
Q ss_pred EEEEEcCCCCcHHHHHHHHh
Q 030504 15 KLVIVGDGGTGKTTFVKRHL 34 (176)
Q Consensus 15 ~i~i~G~~~~GKttl~~~~~ 34 (176)
+|+++|++||||||+...+.
T Consensus 2 ~I~liG~~GsGKsTi~k~La 21 (161)
T d1viaa_ 2 NIVFIGFMGSGKSTLARALA 21 (161)
T ss_dssp CEEEECCTTSCHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHH
Confidence 58999999999999998854
|
| >d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.59 E-value=2.1e-05 Score=50.04 Aligned_cols=23 Identities=26% Similarity=0.468 Sum_probs=19.9
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhc
Q 030504 13 SFKLVIVGDGGTGKTTFVKRHLT 35 (176)
Q Consensus 13 ~~~i~i~G~~~~GKttl~~~~~~ 35 (176)
+..|+|+|+|||||||...++..
T Consensus 1 p~iI~i~GppGSGKsT~a~~La~ 23 (194)
T d1teva_ 1 PLVVFVLGGPGAGKGTQCARIVE 23 (194)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999998653
|
| >d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=97.58 E-value=1.8e-05 Score=50.91 Aligned_cols=21 Identities=33% Similarity=0.354 Sum_probs=18.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHh
Q 030504 14 FKLVIVGDGGTGKTTFVKRHL 34 (176)
Q Consensus 14 ~~i~i~G~~~~GKttl~~~~~ 34 (176)
.=|+++|.|||||||+.+++.
T Consensus 3 ~li~l~GlpgsGKSTla~~L~ 23 (213)
T d1bifa1 3 TLIVMVGLPARGKTYISKKLT 23 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHH
Confidence 458999999999999999865
|
| >d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.54 E-value=6.4e-05 Score=50.60 Aligned_cols=62 Identities=19% Similarity=0.123 Sum_probs=39.5
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHhcCCCCCc-----cccceeEEEeEEEEEecCcEEEEEEEeCCCccc
Q 030504 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKK-----YEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK 74 (176)
Q Consensus 12 ~~~~i~i~G~~~~GKttl~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~ 74 (176)
+-.=|.|+|+.++|||+|+|++++....-. ...|.|+-...... ..+....+.++||.|...
T Consensus 31 ~v~vvsi~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~Giw~~~~~~-~~~~~~~~~~lDteG~~~ 97 (277)
T d1f5na2 31 PMVVVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIWMWCVPH-PKKPGHILVLLDTEGLGD 97 (277)
T ss_dssp BEEEEEEEEBTTSSHHHHHHHHTTCSSCSCCCCSSSCCCCSEEEEEEEC-SSSTTCEEEEEEECCBCC
T ss_pred CEEEEEEECCCCCCHHHHHHHHcCCCCCCccCCCCCCCCCceEEEEeec-cCCCCceEEEEecccccc
Confidence 445689999999999999999876443211 12344532222222 234556788999999653
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Probab=97.49 E-value=3.1e-05 Score=51.04 Aligned_cols=23 Identities=35% Similarity=0.577 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCC
Q 030504 15 KLVIVGDGGTGKTTFVKRHLTGEF 38 (176)
Q Consensus 15 ~i~i~G~~~~GKttl~~~~~~~~~ 38 (176)
+++|+|++|||||||++. +.|-.
T Consensus 31 ~vaIvG~sGsGKSTLl~l-l~gl~ 53 (241)
T d2pmka1 31 VIGIVGRSGSGKSTLTKL-IQRFY 53 (241)
T ss_dssp EEEEECSTTSSHHHHHHH-HTTSS
T ss_pred EEEEECCCCCCHHHHHHH-HHhcC
Confidence 599999999999999997 44443
|
| >d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C5 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.48 E-value=0.0002 Score=47.08 Aligned_cols=21 Identities=38% Similarity=0.520 Sum_probs=18.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 030504 15 KLVIVGDGGTGKTTFVKRHLT 35 (176)
Q Consensus 15 ~i~i~G~~~~GKttl~~~~~~ 35 (176)
++++.|++|+||||++..+..
T Consensus 35 ~lll~Gp~G~GKTt~~~~la~ 55 (252)
T d1sxje2 35 HLLLYGPNGTGKKTRCMALLE 55 (252)
T ss_dssp CEEEECSTTSSHHHHHHTHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999998765
|
| >d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=97.46 E-value=3.1e-05 Score=48.56 Aligned_cols=19 Identities=32% Similarity=0.461 Sum_probs=17.0
Q ss_pred EEEEcCCCCcHHHHHHHHh
Q 030504 16 LVIVGDGGTGKTTFVKRHL 34 (176)
Q Consensus 16 i~i~G~~~~GKttl~~~~~ 34 (176)
|+|.|++||||||+++++.
T Consensus 4 I~i~G~~GsGKsT~~~~L~ 22 (190)
T d1khta_ 4 VVVTGVPGVGSTTSSQLAM 22 (190)
T ss_dssp EEEECCTTSCHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 7888999999999999854
|
| >d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Gluconate kinase domain: Gluconate kinase species: Escherichia coli [TaxId: 562]
Probab=97.46 E-value=3.1e-05 Score=47.97 Aligned_cols=21 Identities=24% Similarity=0.430 Sum_probs=17.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 030504 15 KLVIVGDGGTGKTTFVKRHLT 35 (176)
Q Consensus 15 ~i~i~G~~~~GKttl~~~~~~ 35 (176)
=++++|++||||||+.+.+..
T Consensus 8 iivl~G~~GsGKsT~a~~La~ 28 (171)
T d1knqa_ 8 IYVLMGVSGSGKSAVASEVAH 28 (171)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 367799999999999998653
|
| >d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein Atu3015 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=97.45 E-value=3.5e-05 Score=47.92 Aligned_cols=19 Identities=32% Similarity=0.588 Sum_probs=16.9
Q ss_pred EEEEcCCCCcHHHHHHHHh
Q 030504 16 LVIVGDGGTGKTTFVKRHL 34 (176)
Q Consensus 16 i~i~G~~~~GKttl~~~~~ 34 (176)
|++.|++||||||+.+.+.
T Consensus 7 I~l~G~~GsGKSTia~~La 25 (176)
T d1zp6a1 7 LLLSGHPGSGKSTIAEALA 25 (176)
T ss_dssp EEEEECTTSCHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 7789999999999998754
|
| >d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.44 E-value=3.5e-05 Score=48.52 Aligned_cols=20 Identities=30% Similarity=0.458 Sum_probs=17.6
Q ss_pred EEEEcCCCCcHHHHHHHHhc
Q 030504 16 LVIVGDGGTGKTTFVKRHLT 35 (176)
Q Consensus 16 i~i~G~~~~GKttl~~~~~~ 35 (176)
|+|+|++|||||||++.+..
T Consensus 5 ivl~GpsG~GK~tl~~~L~~ 24 (182)
T d1znwa1 5 VVLSGPSAVGKSTVVRCLRE 24 (182)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHh
Confidence 67899999999999998653
|
| >d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Chloramphenicol phosphotransferase domain: Chloramphenicol phosphotransferase species: Streptomyces venezuelae [TaxId: 54571]
Probab=97.40 E-value=4.3e-05 Score=47.46 Aligned_cols=20 Identities=20% Similarity=0.463 Sum_probs=16.7
Q ss_pred EEEEcCCCCcHHHHHHHHhc
Q 030504 16 LVIVGDGGTGKTTFVKRHLT 35 (176)
Q Consensus 16 i~i~G~~~~GKttl~~~~~~ 35 (176)
|+|.|++||||||+.+.+..
T Consensus 6 I~l~G~~GsGKsTva~~L~~ 25 (178)
T d1qhxa_ 6 IILNGGSSAGKSGIVRCLQS 25 (178)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 56669999999999998543
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=97.39 E-value=4.7e-05 Score=50.56 Aligned_cols=23 Identities=30% Similarity=0.599 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCC
Q 030504 15 KLVIVGDGGTGKTTFVKRHLTGEF 38 (176)
Q Consensus 15 ~i~i~G~~~~GKttl~~~~~~~~~ 38 (176)
+++|+|++|||||||++. +.|-.
T Consensus 43 ~iaivG~sGsGKSTLl~l-l~gl~ 65 (253)
T d3b60a1 43 TVALVGRSGSGKSTIASL-ITRFY 65 (253)
T ss_dssp EEEEEECTTSSHHHHHHH-HTTTT
T ss_pred EEEEECCCCChHHHHHHH-Hhccc
Confidence 599999999999999997 44443
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Probab=97.39 E-value=4.9e-05 Score=50.14 Aligned_cols=23 Identities=26% Similarity=0.445 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCC
Q 030504 15 KLVIVGDGGTGKTTFVKRHLTGEF 38 (176)
Q Consensus 15 ~i~i~G~~~~GKttl~~~~~~~~~ 38 (176)
.++|+|++|||||||++. +.|-.
T Consensus 30 ~vaivG~sGsGKSTLl~l-l~gl~ 52 (242)
T d1mv5a_ 30 IIAFAGPSGGGKSTIFSL-LERFY 52 (242)
T ss_dssp EEEEECCTTSSHHHHHHH-HTTSS
T ss_pred EEEEECCCCCCHHHHHHH-HHHhh
Confidence 699999999999999997 44443
|
| >d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.39 E-value=4.6e-05 Score=48.39 Aligned_cols=20 Identities=35% Similarity=0.735 Sum_probs=18.0
Q ss_pred EEEEcCCCCcHHHHHHHHhc
Q 030504 16 LVIVGDGGTGKTTFVKRHLT 35 (176)
Q Consensus 16 i~i~G~~~~GKttl~~~~~~ 35 (176)
|+|+|++|||||||+++++.
T Consensus 3 Ivl~GPsGsGK~tl~~~L~~ 22 (190)
T d1lvga_ 3 VVLSGPSGAGKSTLLKKLFQ 22 (190)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 89999999999999998653
|
| >d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Erwinia chrysanthemi [TaxId: 556]
Probab=97.37 E-value=5e-05 Score=47.23 Aligned_cols=20 Identities=30% Similarity=0.444 Sum_probs=17.5
Q ss_pred EEEEEcCCCCcHHHHHHHHh
Q 030504 15 KLVIVGDGGTGKTTFVKRHL 34 (176)
Q Consensus 15 ~i~i~G~~~~GKttl~~~~~ 34 (176)
.|+++|++||||||+.+.+.
T Consensus 4 ~Iil~G~~GsGKSTia~~LA 23 (170)
T d1e6ca_ 4 PIFMVGARGCGMTTVGRELA 23 (170)
T ss_dssp CEEEESCTTSSHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHH
Confidence 37899999999999999864
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Probab=97.37 E-value=5.1e-05 Score=48.61 Aligned_cols=23 Identities=30% Similarity=0.483 Sum_probs=19.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCC
Q 030504 15 KLVIVGDGGTGKTTFVKRHLTGEF 38 (176)
Q Consensus 15 ~i~i~G~~~~GKttl~~~~~~~~~ 38 (176)
.++++|+.|+|||||++. +.|..
T Consensus 29 i~~l~G~NGsGKSTLl~~-i~gl~ 51 (200)
T d1sgwa_ 29 VVNFHGPNGIGKTTLLKT-ISTYL 51 (200)
T ss_dssp CEEEECCTTSSHHHHHHH-HTTSS
T ss_pred EEEEECCCCChHHHHHHH-Hhccc
Confidence 378999999999999997 44544
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=97.36 E-value=5.1e-05 Score=49.60 Aligned_cols=20 Identities=35% Similarity=0.566 Sum_probs=17.5
Q ss_pred EEEEEcCCCCcHHHHHHHHh
Q 030504 15 KLVIVGDGGTGKTTFVKRHL 34 (176)
Q Consensus 15 ~i~i~G~~~~GKttl~~~~~ 34 (176)
-++++|++|||||||++.+.
T Consensus 28 i~~liGpsGsGKSTLl~~i~ 47 (232)
T d2awna2 28 FVVFVGPSGCGKSTLLRMIA 47 (232)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHh
Confidence 48899999999999999743
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.36 E-value=5.4e-05 Score=50.20 Aligned_cols=23 Identities=30% Similarity=0.520 Sum_probs=19.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCC
Q 030504 15 KLVIVGDGGTGKTTFVKRHLTGEF 38 (176)
Q Consensus 15 ~i~i~G~~~~GKttl~~~~~~~~~ 38 (176)
.++|+|++|||||||++. +.|-.
T Consensus 42 ~vaivG~sGsGKSTLl~l-i~gl~ 64 (251)
T d1jj7a_ 42 VTALVGPNGSGKSTVAAL-LQNLY 64 (251)
T ss_dssp EEEEECSTTSSHHHHHHH-HTTSS
T ss_pred EEEEECCCCCcHHHHHHH-Hhccc
Confidence 589999999999999997 44544
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=97.36 E-value=5.1e-05 Score=49.56 Aligned_cols=23 Identities=26% Similarity=0.371 Sum_probs=19.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCC
Q 030504 15 KLVIVGDGGTGKTTFVKRHLTGEF 38 (176)
Q Consensus 15 ~i~i~G~~~~GKttl~~~~~~~~~ 38 (176)
-++++|++|||||||++. +.|-.
T Consensus 33 ~~~iiG~sGsGKSTLl~~-i~gl~ 55 (230)
T d1l2ta_ 33 FVSIMGPSGSGKSTMLNI-IGCLD 55 (230)
T ss_dssp EEEEECSTTSSHHHHHHH-HTTSS
T ss_pred EEEEECCCCCCcchhhHh-ccCCC
Confidence 389999999999999996 55544
|
| >d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Streptococcus pneumoniae [TaxId: 1313]
Probab=97.36 E-value=6.1e-05 Score=48.79 Aligned_cols=23 Identities=26% Similarity=0.394 Sum_probs=20.3
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHh
Q 030504 12 PSFKLVIVGDGGTGKTTFVKRHL 34 (176)
Q Consensus 12 ~~~~i~i~G~~~~GKttl~~~~~ 34 (176)
..++|+|-|++||||||....+.
T Consensus 2 k~i~IaIdGp~GsGKgT~ak~La 24 (223)
T d1q3ta_ 2 KTIQIAIDGPASSGKSTVAKIIA 24 (223)
T ss_dssp CCCEEEEECSSCSSHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHH
Confidence 46789999999999999999855
|
| >d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit species: Streptococcus pyogenes [TaxId: 1314]
Probab=97.34 E-value=7e-05 Score=49.90 Aligned_cols=23 Identities=22% Similarity=0.408 Sum_probs=19.6
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhc
Q 030504 13 SFKLVIVGDGGTGKTTFVKRHLT 35 (176)
Q Consensus 13 ~~~i~i~G~~~~GKttl~~~~~~ 35 (176)
+..|++.|+||+|||||+..+..
T Consensus 32 P~~ilL~GpPGtGKT~la~~la~ 54 (273)
T d1gvnb_ 32 PTAFLLGGQPGSGKTSLRSAIFE 54 (273)
T ss_dssp CEEEEEECCTTSCTHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 34699999999999999998653
|
| >d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Escherichia coli [TaxId: 562]
Probab=97.34 E-value=5.6e-05 Score=48.63 Aligned_cols=21 Identities=19% Similarity=0.517 Sum_probs=18.3
Q ss_pred EEEEcCCCCcHHHHHHHHhcC
Q 030504 16 LVIVGDGGTGKTTFVKRHLTG 36 (176)
Q Consensus 16 i~i~G~~~~GKttl~~~~~~~ 36 (176)
|+|+||+|||||||+++++..
T Consensus 5 ivi~GPSG~GK~tl~~~L~~~ 25 (205)
T d1s96a_ 5 YIVSAPSGAGKSSLIQALLKT 25 (205)
T ss_dssp EEEECCTTSCHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHhh
Confidence 678999999999999997643
|
| >d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Uridylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.32 E-value=8.9e-05 Score=47.12 Aligned_cols=21 Identities=24% Similarity=0.491 Sum_probs=18.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 030504 15 KLVIVGDGGTGKTTFVKRHLT 35 (176)
Q Consensus 15 ~i~i~G~~~~GKttl~~~~~~ 35 (176)
-|+|+|+|||||||+...+..
T Consensus 10 iI~i~GppGSGKsT~a~~La~ 30 (196)
T d1ukza_ 10 VIFVLGGPGAGKGTQCEKLVK 30 (196)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 588999999999999998653
|
| >d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.31 E-value=3.4e-05 Score=48.85 Aligned_cols=23 Identities=26% Similarity=0.265 Sum_probs=19.6
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHh
Q 030504 12 PSFKLVIVGDGGTGKTTFVKRHL 34 (176)
Q Consensus 12 ~~~~i~i~G~~~~GKttl~~~~~ 34 (176)
+...|.++|.+||||||+.+.+.
T Consensus 18 ~g~vI~L~G~pGSGKTTiAk~La 40 (195)
T d1x6va3 18 RGCTVWLTGLSGAGKTTVSMALE 40 (195)
T ss_dssp CCEEEEEESSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHH
Confidence 34678899999999999999854
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=97.31 E-value=6.6e-05 Score=49.27 Aligned_cols=23 Identities=30% Similarity=0.622 Sum_probs=18.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCC
Q 030504 15 KLVIVGDGGTGKTTFVKRHLTGEF 38 (176)
Q Consensus 15 ~i~i~G~~~~GKttl~~~~~~~~~ 38 (176)
-++++|++|||||||++. +.|-.
T Consensus 26 ~~~liGpnGaGKSTll~~-i~Gl~ 48 (240)
T d2onka1 26 YCVLLGPTGAGKSVFLEL-IAGIV 48 (240)
T ss_dssp EEEEECCTTSSHHHHHHH-HHTSS
T ss_pred EEEEECCCCChHHHHHHH-HHcCC
Confidence 357899999999999997 44544
|
| >d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=97.30 E-value=7.8e-05 Score=47.32 Aligned_cols=23 Identities=30% Similarity=0.486 Sum_probs=19.6
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhc
Q 030504 13 SFKLVIVGDGGTGKTTFVKRHLT 35 (176)
Q Consensus 13 ~~~i~i~G~~~~GKttl~~~~~~ 35 (176)
.-+++++|++|+|||+++..+..
T Consensus 43 k~n~lLvG~pGVGKTalv~~LA~ 65 (195)
T d1jbka_ 43 KNNPVLIGEPGVGKTAIVEGLAQ 65 (195)
T ss_dssp SCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCeEEEecCCcccHHHHHHHHH
Confidence 34799999999999999988653
|
| >d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=97.29 E-value=6.4e-05 Score=47.77 Aligned_cols=21 Identities=29% Similarity=0.518 Sum_probs=18.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 030504 15 KLVIVGDGGTGKTTFVKRHLT 35 (176)
Q Consensus 15 ~i~i~G~~~~GKttl~~~~~~ 35 (176)
-|+|+|+|||||||++.++..
T Consensus 10 iI~l~G~pGSGKsT~a~~La~ 30 (194)
T d3adka_ 10 IIFVVGGPGSGKGTQCEKIVQ 30 (194)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 488999999999999998654
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.29 E-value=7e-05 Score=50.50 Aligned_cols=23 Identities=39% Similarity=0.631 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCC
Q 030504 15 KLVIVGDGGTGKTTFVKRHLTGEF 38 (176)
Q Consensus 15 ~i~i~G~~~~GKttl~~~~~~~~~ 38 (176)
.++|+|++|+|||||++.+ .|-.
T Consensus 64 ~vaivG~nGsGKSTLl~~i-~Gl~ 86 (281)
T d1r0wa_ 64 MLAITGSTGSGKTSLLMLI-LGEL 86 (281)
T ss_dssp EEEEEESTTSSHHHHHHHH-HTSS
T ss_pred EEEEECCCCChHHHHHHHH-hCCC
Confidence 4899999999999999974 4443
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Probab=97.29 E-value=7e-05 Score=49.15 Aligned_cols=23 Identities=39% Similarity=0.577 Sum_probs=19.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCC
Q 030504 15 KLVIVGDGGTGKTTFVKRHLTGEF 38 (176)
Q Consensus 15 ~i~i~G~~~~GKttl~~~~~~~~~ 38 (176)
-++++|++|||||||++. +.|-.
T Consensus 34 ~~~liGpsGaGKSTLl~~-i~Gl~ 56 (239)
T d1v43a3 34 FLVLLGPSGCGKTTTLRM-IAGLE 56 (239)
T ss_dssp EEEEECCTTSSHHHHHHH-HHTSS
T ss_pred EEEEECCCCChHHHHHHH-HHcCC
Confidence 489999999999999997 44543
|
| >d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein rbstp0775 species: Bacillus stearothermophilus [TaxId: 1422]
Probab=97.27 E-value=0.00011 Score=46.38 Aligned_cols=24 Identities=29% Similarity=0.266 Sum_probs=20.4
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHhc
Q 030504 12 PSFKLVIVGDGGTGKTTFVKRHLT 35 (176)
Q Consensus 12 ~~~~i~i~G~~~~GKttl~~~~~~ 35 (176)
.++=|.|.|++|||||||++++..
T Consensus 21 ~~~iIgI~G~~GSGKSTla~~L~~ 44 (198)
T d1rz3a_ 21 GRLVLGIDGLSRSGKTTLANQLSQ 44 (198)
T ss_dssp SSEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 456689999999999999998653
|
| >d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Uridine-cytidine kinase 2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.26 E-value=9.7e-05 Score=47.58 Aligned_cols=22 Identities=18% Similarity=0.445 Sum_probs=19.6
Q ss_pred eeEEEEEcCCCCcHHHHHHHHh
Q 030504 13 SFKLVIVGDGGTGKTTFVKRHL 34 (176)
Q Consensus 13 ~~~i~i~G~~~~GKttl~~~~~ 34 (176)
++-|+|.|.+|||||||.+.+.
T Consensus 2 P~iIgI~G~~gSGKSTla~~L~ 23 (213)
T d1uj2a_ 2 PFLIGVSGGTASGKSSVCAKIV 23 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHH
Confidence 5779999999999999999864
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Probab=97.25 E-value=6.1e-05 Score=50.04 Aligned_cols=23 Identities=26% Similarity=0.530 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCC
Q 030504 15 KLVIVGDGGTGKTTFVKRHLTGEF 38 (176)
Q Consensus 15 ~i~i~G~~~~GKttl~~~~~~~~~ 38 (176)
+++|+|++|||||||++. +.|-.
T Consensus 46 ~vaivG~sGsGKSTLl~l-l~gl~ 68 (255)
T d2hyda1 46 TVAFVGMSGGGKSTLINL-IPRFY 68 (255)
T ss_dssp EEEEECSTTSSHHHHHTT-TTTSS
T ss_pred EEEEECCCCCcHHHHHHH-HHhcC
Confidence 699999999999999996 44443
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Probab=97.25 E-value=7.8e-05 Score=48.98 Aligned_cols=23 Identities=22% Similarity=0.368 Sum_probs=19.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCC
Q 030504 15 KLVIVGDGGTGKTTFVKRHLTGEF 38 (176)
Q Consensus 15 ~i~i~G~~~~GKttl~~~~~~~~~ 38 (176)
-+.++|++|||||||++. +.|-.
T Consensus 33 ~~~iiG~sGsGKSTLl~~-i~Gl~ 55 (240)
T d3dhwc1 33 IYGVIGASGAGKSTLIRC-VNLLE 55 (240)
T ss_dssp EEEEEESTTSSHHHHHHH-HTTSS
T ss_pred EEEEECCCCCCHHHHHHH-HcCCc
Confidence 379999999999999997 55543
|
| >d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]
Probab=97.24 E-value=7.9e-05 Score=46.83 Aligned_cols=20 Identities=30% Similarity=0.566 Sum_probs=16.6
Q ss_pred EE-EEEcCCCCcHHHHHHHHh
Q 030504 15 KL-VIVGDGGTGKTTFVKRHL 34 (176)
Q Consensus 15 ~i-~i~G~~~~GKttl~~~~~ 34 (176)
|| +|.|.+||||||+++.+.
T Consensus 2 kiivi~G~~GsGKTT~~~~La 22 (194)
T d1nksa_ 2 KIGIVTGIPGVGKSTVLAKVK 22 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 55 457999999999999864
|
| >d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpA, an Hsp100 chaperone, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=97.23 E-value=9.6e-05 Score=49.37 Aligned_cols=23 Identities=26% Similarity=0.398 Sum_probs=19.7
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhc
Q 030504 13 SFKLVIVGDGGTGKTTFVKRHLT 35 (176)
Q Consensus 13 ~~~i~i~G~~~~GKttl~~~~~~ 35 (176)
.-+++++|++|+|||+++..+..
T Consensus 39 k~n~lLVG~~GvGKTalv~~la~ 61 (268)
T d1r6bx2 39 KNNPLLVGESGVGKTAIAEGLAW 61 (268)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHH
T ss_pred cCCcEEECCCCCcHHHHHHHHHH
Confidence 34899999999999999988653
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Probab=97.22 E-value=9e-05 Score=48.67 Aligned_cols=23 Identities=30% Similarity=0.556 Sum_probs=19.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCC
Q 030504 15 KLVIVGDGGTGKTTFVKRHLTGEF 38 (176)
Q Consensus 15 ~i~i~G~~~~GKttl~~~~~~~~~ 38 (176)
.+.++|++|||||||++. +.|-.
T Consensus 31 ~~~liG~sGaGKSTll~~-i~gl~ 53 (240)
T d1g2912 31 FMILLGPSGCGKTTTLRM-IAGLE 53 (240)
T ss_dssp EEEEECSTTSSHHHHHHH-HHTSS
T ss_pred EEEEECCCCChHHHHHHH-HhcCC
Confidence 489999999999999997 44443
|
| >d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermotoga maritima [TaxId: 2336]
Probab=97.22 E-value=8.5e-05 Score=48.68 Aligned_cols=20 Identities=30% Similarity=0.474 Sum_probs=18.2
Q ss_pred EEEEEcCCCCcHHHHHHHHh
Q 030504 15 KLVIVGDGGTGKTTFVKRHL 34 (176)
Q Consensus 15 ~i~i~G~~~~GKttl~~~~~ 34 (176)
.+++.|+||+||||+++.+.
T Consensus 37 ~~L~~GPpGtGKT~lA~~la 56 (238)
T d1in4a2 37 HVLLAGPPGLGKTTLAHIIA 56 (238)
T ss_dssp CEEEESSTTSSHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHH
Confidence 58999999999999999865
|
| >d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermus thermophilus [TaxId: 274]
Probab=97.21 E-value=8.8e-05 Score=48.65 Aligned_cols=21 Identities=33% Similarity=0.431 Sum_probs=18.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHh
Q 030504 14 FKLVIVGDGGTGKTTFVKRHL 34 (176)
Q Consensus 14 ~~i~i~G~~~~GKttl~~~~~ 34 (176)
-.+++.|+||+||||+++.+.
T Consensus 36 ~~~Ll~GPpG~GKTtla~~la 56 (239)
T d1ixsb2 36 EHLLLFGPPGLGKTTLAHVIA 56 (239)
T ss_dssp CCEEEECCTTSCHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHH
Confidence 358999999999999999865
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Probab=97.20 E-value=6.1e-05 Score=49.10 Aligned_cols=22 Identities=41% Similarity=0.727 Sum_probs=18.5
Q ss_pred EEEEcCCCCcHHHHHHHHhcCCC
Q 030504 16 LVIVGDGGTGKTTFVKRHLTGEF 38 (176)
Q Consensus 16 i~i~G~~~~GKttl~~~~~~~~~ 38 (176)
++++|++|||||||++. +.|-.
T Consensus 29 ~~liGpsGaGKSTll~~-l~Gl~ 50 (229)
T d3d31a2 29 FVILGPTGAGKTLFLEL-IAGFH 50 (229)
T ss_dssp EEEECCCTHHHHHHHHH-HHTSS
T ss_pred EEEECCCCCcHHHHHHH-HhcCc
Confidence 88999999999999997 44443
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Probab=97.19 E-value=9.8e-05 Score=48.59 Aligned_cols=22 Identities=32% Similarity=0.649 Sum_probs=18.7
Q ss_pred EEEEcCCCCcHHHHHHHHhcCCC
Q 030504 16 LVIVGDGGTGKTTFVKRHLTGEF 38 (176)
Q Consensus 16 i~i~G~~~~GKttl~~~~~~~~~ 38 (176)
++++|+.|+|||||++. +.|-.
T Consensus 35 ~~liGpnGaGKSTl~~~-i~Gl~ 56 (240)
T d1ji0a_ 35 VTLIGANGAGKTTTLSA-IAGLV 56 (240)
T ss_dssp EEEECSTTSSHHHHHHH-HTTSS
T ss_pred EEEECCCCCcHHHHHHH-HhCCC
Confidence 78999999999999997 44544
|
| >d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=97.18 E-value=0.00016 Score=47.71 Aligned_cols=23 Identities=22% Similarity=0.414 Sum_probs=20.2
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHh
Q 030504 12 PSFKLVIVGDGGTGKTTFVKRHL 34 (176)
Q Consensus 12 ~~~~i~i~G~~~~GKttl~~~~~ 34 (176)
+...|++.|++|+|||++++.+.
T Consensus 39 p~~~vLL~GppGtGKT~la~alA 61 (246)
T d1d2na_ 39 PLVSVLLEGPPHSGKTALAAKIA 61 (246)
T ss_dssp SEEEEEEECSTTSSHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHh
Confidence 45679999999999999999865
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Probab=97.14 E-value=0.00012 Score=48.05 Aligned_cols=23 Identities=26% Similarity=0.466 Sum_probs=18.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCC
Q 030504 15 KLVIVGDGGTGKTTFVKRHLTGEF 38 (176)
Q Consensus 15 ~i~i~G~~~~GKttl~~~~~~~~~ 38 (176)
-+.++|+.|+|||||++. +.|..
T Consensus 30 i~glvG~nGaGKSTLl~~-l~G~~ 52 (238)
T d1vpla_ 30 IFGLIGPNGAGKTTTLRI-ISTLI 52 (238)
T ss_dssp EEEEECCTTSSHHHHHHH-HTTSS
T ss_pred EEEEECCCCCCHHHHHHH-HhcCC
Confidence 378999999999999997 44544
|
| >d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric traffic ATPase, HP0525 species: Helicobacter pylori [TaxId: 210]
Probab=97.11 E-value=0.00013 Score=50.24 Aligned_cols=22 Identities=32% Similarity=0.693 Sum_probs=19.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 030504 14 FKLVIVGDGGTGKTTFVKRHLT 35 (176)
Q Consensus 14 ~~i~i~G~~~~GKttl~~~~~~ 35 (176)
.+|+|.|++|||||||++.++.
T Consensus 167 ~nili~G~tgSGKTT~l~al~~ 188 (323)
T d1g6oa_ 167 KNVIVCGGTGSGKTTYIKSIME 188 (323)
T ss_dssp CCEEEEESTTSSHHHHHHHHGG
T ss_pred CCEEEEeeccccchHHHHHHhh
Confidence 4699999999999999998663
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Probab=97.10 E-value=8.6e-05 Score=48.61 Aligned_cols=19 Identities=42% Similarity=0.721 Sum_probs=17.3
Q ss_pred EEEEcCCCCcHHHHHHHHh
Q 030504 16 LVIVGDGGTGKTTFVKRHL 34 (176)
Q Consensus 16 i~i~G~~~~GKttl~~~~~ 34 (176)
++++|+.|+|||||++.+.
T Consensus 28 ~~iiG~nGaGKSTLl~~l~ 46 (231)
T d1l7vc_ 28 LHLVGPNGAGKSTLLARMA 46 (231)
T ss_dssp EECBCCTTSSHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHh
Confidence 8899999999999999854
|
| >d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyribonucleoside kinase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=97.09 E-value=0.00021 Score=45.28 Aligned_cols=26 Identities=31% Similarity=0.538 Sum_probs=22.1
Q ss_pred CCCCeeEEEEEcCCCCcHHHHHHHHh
Q 030504 9 VDYPSFKLVIVGDGGTGKTTFVKRHL 34 (176)
Q Consensus 9 ~~~~~~~i~i~G~~~~GKttl~~~~~ 34 (176)
...+++-|+|-|..||||||+++.+.
T Consensus 5 ~~~kp~~I~ieG~~GsGKTTl~~~L~ 30 (197)
T d2vp4a1 5 EGTQPFTVLIEGNIGSGKTTYLNHFE 30 (197)
T ss_dssp TTCCCEEEEEECSTTSCHHHHHHTTG
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHH
Confidence 34567889999999999999999854
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Probab=97.06 E-value=0.00016 Score=48.02 Aligned_cols=23 Identities=30% Similarity=0.469 Sum_probs=19.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCC
Q 030504 15 KLVIVGDGGTGKTTFVKRHLTGEF 38 (176)
Q Consensus 15 ~i~i~G~~~~GKttl~~~~~~~~~ 38 (176)
-++|+|++|||||||++.+ .|-.
T Consensus 30 i~~iiG~sGsGKSTLl~~i-~Gl~ 52 (258)
T d1b0ua_ 30 VISIIGSSGSGKSTFLRCI-NFLE 52 (258)
T ss_dssp EEEEECCTTSSHHHHHHHH-TTSS
T ss_pred EEEEECCCCCcHHHHHHHH-HcCc
Confidence 4899999999999999974 4543
|
| >d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=97.05 E-value=0.00016 Score=49.36 Aligned_cols=24 Identities=25% Similarity=0.519 Sum_probs=20.4
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHhc
Q 030504 12 PSFKLVIVGDGGTGKTTFVKRHLT 35 (176)
Q Consensus 12 ~~~~i~i~G~~~~GKttl~~~~~~ 35 (176)
+.-.++++||||+|||.|++++..
T Consensus 48 ~~~~iLl~GPpG~GKT~lAkalA~ 71 (309)
T d1ofha_ 48 TPKNILMIGPTGVGKTEIARRLAK 71 (309)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHhh
Confidence 346799999999999999998653
|
| >d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=97.03 E-value=0.00019 Score=46.76 Aligned_cols=21 Identities=33% Similarity=0.398 Sum_probs=18.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 030504 15 KLVIVGDGGTGKTTFVKRHLT 35 (176)
Q Consensus 15 ~i~i~G~~~~GKttl~~~~~~ 35 (176)
.+++.|++|+||||+++.+..
T Consensus 47 ~lll~Gp~G~GKTtla~~iak 67 (231)
T d1iqpa2 47 HLLFAGPPGVGKTTAALALAR 67 (231)
T ss_dssp EEEEESCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHH
Confidence 489999999999999998654
|
| >d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6, N-domain species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=97.03 E-value=0.00025 Score=47.02 Aligned_cols=23 Identities=26% Similarity=0.419 Sum_probs=19.9
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhc
Q 030504 13 SFKLVIVGDGGTGKTTFVKRHLT 35 (176)
Q Consensus 13 ~~~i~i~G~~~~GKttl~~~~~~ 35 (176)
.-.++|.|++|+|||++++.+..
T Consensus 43 ~~~lll~GppGtGKT~l~~~l~~ 65 (276)
T d1fnna2 43 YPRATLLGRPGTGKTVTLRKLWE 65 (276)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999998664
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=97.02 E-value=0.00018 Score=47.78 Aligned_cols=22 Identities=36% Similarity=0.753 Sum_probs=18.6
Q ss_pred EEEEcCCCCcHHHHHHHHhcCCC
Q 030504 16 LVIVGDGGTGKTTFVKRHLTGEF 38 (176)
Q Consensus 16 i~i~G~~~~GKttl~~~~~~~~~ 38 (176)
++++|+.|+|||||++. +.|-.
T Consensus 33 ~~liG~nGaGKSTLl~~-i~Gl~ 54 (254)
T d1g6ha_ 33 TLIIGPNGSGKSTLINV-ITGFL 54 (254)
T ss_dssp EEEECSTTSSHHHHHHH-HTTSS
T ss_pred EEEECCCCCcHHHHHHH-HHCCC
Confidence 78999999999999997 44543
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=97.01 E-value=8.3e-05 Score=48.86 Aligned_cols=23 Identities=39% Similarity=0.683 Sum_probs=19.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCC
Q 030504 15 KLVIVGDGGTGKTTFVKRHLTGEF 38 (176)
Q Consensus 15 ~i~i~G~~~~GKttl~~~~~~~~~ 38 (176)
.++++|++|||||||++. +.|-.
T Consensus 33 ~~~iiG~sGsGKSTll~~-i~gl~ 55 (242)
T d1oxxk2 33 RFGILGPSGAGKTTFMRI-IAGLD 55 (242)
T ss_dssp EEEEECSCHHHHHHHHHH-HHTSS
T ss_pred EEEEECCCCCcHHHHHHH-HHcCc
Confidence 489999999999999997 44543
|
| >d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Archaeal ATPase SSO1545 species: Sulfolobus solfataricus [TaxId: 2287]
Probab=96.94 E-value=0.00022 Score=47.36 Aligned_cols=21 Identities=24% Similarity=0.414 Sum_probs=18.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 030504 15 KLVIVGDGGTGKTTFVKRHLT 35 (176)
Q Consensus 15 ~i~i~G~~~~GKttl~~~~~~ 35 (176)
.|+|.|++|+|||||+++++.
T Consensus 31 ~i~i~G~~G~GKTsLl~~~~~ 51 (283)
T d2fnaa2 31 ITLVLGLRRTGKSSIIKIGIN 51 (283)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEcCCCCcHHHHHHHHHH
Confidence 578999999999999998764
|
| >d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.93 E-value=0.00025 Score=46.69 Aligned_cols=23 Identities=26% Similarity=0.202 Sum_probs=19.7
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhc
Q 030504 13 SFKLVIVGDGGTGKTTFVKRHLT 35 (176)
Q Consensus 13 ~~~i~i~G~~~~GKttl~~~~~~ 35 (176)
.-.+++.|++|+||||++..+..
T Consensus 52 ~~~lll~GPpG~GKTt~a~~la~ 74 (253)
T d1sxja2 52 FRAAMLYGPPGIGKTTAAHLVAQ 74 (253)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHH
Confidence 34699999999999999998653
|
| >d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=96.90 E-value=0.00039 Score=44.66 Aligned_cols=24 Identities=17% Similarity=0.249 Sum_probs=20.5
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHh
Q 030504 11 YPSFKLVIVGDGGTGKTTFVKRHL 34 (176)
Q Consensus 11 ~~~~~i~i~G~~~~GKttl~~~~~ 34 (176)
....-|.+.|.+|||||||.+.+.
T Consensus 22 ~kg~vIwltGlsGsGKTTia~~L~ 45 (208)
T d1m7ga_ 22 QRGLTIWLTGLSASGKSTLAVELE 45 (208)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHH
Confidence 345679999999999999999865
|
| >d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: YjeE-like domain: Hypothetical protein HI0065 species: Haemophilus influenzae [TaxId: 727]
Probab=96.86 E-value=0.00026 Score=43.24 Aligned_cols=36 Identities=31% Similarity=0.372 Sum_probs=25.6
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHhcCCC--CCcccccee
Q 030504 12 PSFKLVIVGDGGTGKTTFVKRHLTGEF--EKKYEPTIG 47 (176)
Q Consensus 12 ~~~~i~i~G~~~~GKttl~~~~~~~~~--~~~~~~~~~ 47 (176)
+..-|++-|+-|||||||++.+..+-- ....+||..
T Consensus 32 ~g~ii~L~G~LGaGKTtfvr~~~~~lg~~~~V~SPTF~ 69 (158)
T d1htwa_ 32 KAIMVYLNGDLGAGKTTLTRGMLQGIGHQGNVKSPTYT 69 (158)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHHTTCCSCCCCCTTT
T ss_pred CCeEEEEecCCCccHHHHHHHHHhhcccccccCCCceE
Confidence 345688999999999999999876432 234455543
|
| >d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Escherichia coli [TaxId: 562]
Probab=96.85 E-value=0.0003 Score=45.26 Aligned_cols=20 Identities=35% Similarity=0.484 Sum_probs=16.8
Q ss_pred EEEEEcCCCCcHHHHHHHHh
Q 030504 15 KLVIVGDGGTGKTTFVKRHL 34 (176)
Q Consensus 15 ~i~i~G~~~~GKttl~~~~~ 34 (176)
=|+|.|+|||||+|+...+.
T Consensus 5 iI~I~GppGSGKgT~ak~La 24 (225)
T d1ckea_ 5 VITIDGPSGAGKGTLCKAMA 24 (225)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 36677999999999999854
|
| >d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6-like protein APE0152, N-terminal domain species: Aeropyrum pernix [TaxId: 56636]
Probab=96.81 E-value=0.00041 Score=46.16 Aligned_cols=20 Identities=35% Similarity=0.426 Sum_probs=16.5
Q ss_pred EEEEcCCCCcHHHHHHHHhc
Q 030504 16 LVIVGDGGTGKTTFVKRHLT 35 (176)
Q Consensus 16 i~i~G~~~~GKttl~~~~~~ 35 (176)
+++.|+||+|||++++.+..
T Consensus 49 l~l~GppGtGKT~l~~~l~~ 68 (287)
T d1w5sa2 49 YGSIGRVGIGKTTLAKFTVK 68 (287)
T ss_dssp EECTTCCSSSHHHHHHHHHH
T ss_pred EEeECCCCCCHHHHHHHHHH
Confidence 34569999999999998664
|
| >d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.80 E-value=0.00043 Score=45.96 Aligned_cols=23 Identities=26% Similarity=0.397 Sum_probs=19.6
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhc
Q 030504 13 SFKLVIVGDGGTGKTTFVKRHLT 35 (176)
Q Consensus 13 ~~~i~i~G~~~~GKttl~~~~~~ 35 (176)
+-.+++.|++|+|||++++.+..
T Consensus 38 ~~giLL~GppGtGKT~l~~ala~ 60 (258)
T d1e32a2 38 PRGILLYGPPGTGKTLIARAVAN 60 (258)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CceeEEecCCCCCchHHHHHHHH
Confidence 34699999999999999998553
|
| >d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Thermus thermophilus [TaxId: 274]
Probab=96.79 E-value=0.0005 Score=43.30 Aligned_cols=24 Identities=25% Similarity=0.320 Sum_probs=20.3
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHhc
Q 030504 12 PSFKLVIVGDGGTGKTTFVKRHLT 35 (176)
Q Consensus 12 ~~~~i~i~G~~~~GKttl~~~~~~ 35 (176)
.++=|+|.|.+||||||+++.|..
T Consensus 2 ~p~IIgitG~~gSGKstva~~l~~ 25 (191)
T d1uf9a_ 2 HPIIIGITGNIGSGKSTVAALLRS 25 (191)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 457789999999999999997643
|
| >d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Pantothenate kinase PanK species: Escherichia coli [TaxId: 562]
Probab=96.78 E-value=0.00061 Score=46.32 Aligned_cols=26 Identities=19% Similarity=0.203 Sum_probs=21.6
Q ss_pred CCCCeeEEEEEcCCCCcHHHHHHHHh
Q 030504 9 VDYPSFKLVIVGDGGTGKTTFVKRHL 34 (176)
Q Consensus 9 ~~~~~~~i~i~G~~~~GKttl~~~~~ 34 (176)
....++=|.|.|++|||||||.+.+.
T Consensus 76 ~~k~P~iIGIaG~sgSGKSTla~~L~ 101 (308)
T d1sq5a_ 76 GQRIPYIISIAGSVAVGKSTTARVLQ 101 (308)
T ss_dssp -CCCCEEEEEEECTTSSHHHHHHHHH
T ss_pred CCCCCEEEEEeCCCCCCCcHHHHHHH
Confidence 34567899999999999999988753
|
| >d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Thermus thermophilus [TaxId: 274]
Probab=96.74 E-value=0.00051 Score=45.31 Aligned_cols=21 Identities=29% Similarity=0.466 Sum_probs=18.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHh
Q 030504 14 FKLVIVGDGGTGKTTFVKRHL 34 (176)
Q Consensus 14 ~~i~i~G~~~~GKttl~~~~~ 34 (176)
-.|++.|++|+|||++++.+.
T Consensus 43 ~giLl~GppGtGKT~la~aia 63 (247)
T d1ixza_ 43 KGVLLVGPPGVGKTHLARAVA 63 (247)
T ss_dssp SEEEEECCTTSSHHHHHHHHH
T ss_pred ceEEEecCCCCChhHHHHHHH
Confidence 359999999999999999865
|
| >d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=96.74 E-value=0.00063 Score=48.70 Aligned_cols=25 Identities=24% Similarity=0.484 Sum_probs=21.0
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHhc
Q 030504 11 YPSFKLVIVGDGGTGKTTFVKRHLT 35 (176)
Q Consensus 11 ~~~~~i~i~G~~~~GKttl~~~~~~ 35 (176)
..+=||+++||+|||||-|++++..
T Consensus 47 i~ksNILliGPTGvGKTlLAr~LAk 71 (443)
T d1g41a_ 47 VTPKNILMIGPTGVGKTEIARRLAK 71 (443)
T ss_dssp CCCCCEEEECCTTSSHHHHHHHHHH
T ss_pred cccccEEEECCCCCCHHHHHHHHHH
Confidence 3445999999999999999998654
|
| >d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C2 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.73 E-value=0.00041 Score=45.14 Aligned_cols=21 Identities=29% Similarity=0.436 Sum_probs=18.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 030504 15 KLVIVGDGGTGKTTFVKRHLT 35 (176)
Q Consensus 15 ~i~i~G~~~~GKttl~~~~~~ 35 (176)
.+++.|++|+||||+++.+..
T Consensus 35 ~lll~Gp~G~GKTtl~~~i~~ 55 (237)
T d1sxjd2 35 HMLFYGPPGTGKTSTILALTK 55 (237)
T ss_dssp CEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCChHHHHHHHHH
Confidence 389999999999999998664
|
| >d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.72 E-value=0.00042 Score=44.83 Aligned_cols=20 Identities=40% Similarity=0.471 Sum_probs=17.8
Q ss_pred EEEEEcCCCCcHHHHHHHHh
Q 030504 15 KLVIVGDGGTGKTTFVKRHL 34 (176)
Q Consensus 15 ~i~i~G~~~~GKttl~~~~~ 34 (176)
.+++.|++|+||||+++.+.
T Consensus 38 ~~ll~Gp~G~GKTt~a~~la 57 (224)
T d1sxjb2 38 HMIISGMPGIGKTTSVHCLA 57 (224)
T ss_dssp CEEEECSTTSSHHHHHHHHH
T ss_pred eEEEECCCCCCchhhHHHHH
Confidence 48999999999999998765
|
| >d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Escherichia coli [TaxId: 562]
Probab=96.70 E-value=0.00057 Score=45.31 Aligned_cols=22 Identities=36% Similarity=0.474 Sum_probs=19.3
Q ss_pred eeEEEEEcCCCCcHHHHHHHHh
Q 030504 13 SFKLVIVGDGGTGKTTFVKRHL 34 (176)
Q Consensus 13 ~~~i~i~G~~~~GKttl~~~~~ 34 (176)
+-.+++.|+||+|||++++.+.
T Consensus 45 ~~~iLL~GppGtGKT~la~~iA 66 (256)
T d1lv7a_ 45 PKGVLMVGPPGTGKTLLAKAIA 66 (256)
T ss_dssp CCEEEEECCTTSCHHHHHHHHH
T ss_pred CCeEEeeCCCCCCccHHHHHHH
Confidence 3469999999999999999865
|
| >d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.67 E-value=0.00091 Score=42.63 Aligned_cols=24 Identities=21% Similarity=0.097 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCC
Q 030504 15 KLVIVGDGGTGKTTFVKRHLTGEF 38 (176)
Q Consensus 15 ~i~i~G~~~~GKttl~~~~~~~~~ 38 (176)
=+.|.|++|+|||+|+.++..+..
T Consensus 25 v~~i~G~~GsGKT~l~l~la~~~~ 48 (242)
T d1n0wa_ 25 ITEMFGEFRTGKTQICHTLAVTCQ 48 (242)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHTT
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHH
Confidence 378899999999999999875443
|
| >d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Thermus thermophilus [TaxId: 274]
Probab=96.65 E-value=0.00035 Score=49.11 Aligned_cols=22 Identities=32% Similarity=0.508 Sum_probs=17.8
Q ss_pred eeEEEEEcCCCCcHHHHHHHHh
Q 030504 13 SFKLVIVGDGGTGKTTFVKRHL 34 (176)
Q Consensus 13 ~~~i~i~G~~~~GKttl~~~~~ 34 (176)
.=++++||++|||||+++..+.
T Consensus 43 k~n~llvG~~GvGKtaiv~~la 64 (387)
T d1qvra2 43 KNNPVLIGEPGVGKTAIVEGLA 64 (387)
T ss_dssp CCCCEEEECTTSCHHHHHHHHH
T ss_pred CCCCeEECCCCCCHHHHHHHHH
Confidence 3468999999999999886543
|
| >d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.64 E-value=0.00051 Score=44.46 Aligned_cols=21 Identities=33% Similarity=0.458 Sum_probs=18.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 030504 15 KLVIVGDGGTGKTTFVKRHLT 35 (176)
Q Consensus 15 ~i~i~G~~~~GKttl~~~~~~ 35 (176)
.+++.|++|+||||++..+..
T Consensus 37 ~lLl~Gp~G~GKttl~~~la~ 57 (227)
T d1sxjc2 37 HLLFYGPPGTGKTSTIVALAR 57 (227)
T ss_dssp CEEEECSSSSSHHHHHHHHHH
T ss_pred eEEEECCCCCChhHHHHHHHH
Confidence 489999999999999998764
|
| >d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.56 E-value=0.00067 Score=44.15 Aligned_cols=23 Identities=17% Similarity=0.143 Sum_probs=19.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 030504 15 KLVIVGDGGTGKTTFVKRHLTGE 37 (176)
Q Consensus 15 ~i~i~G~~~~GKttl~~~~~~~~ 37 (176)
=++|.|++|+|||+|+.+|....
T Consensus 36 ~~li~G~pGsGKT~l~lq~~~~~ 58 (251)
T d1szpa2 36 ITELFGEFRTGKSQLCHTLAVTC 58 (251)
T ss_dssp EEEEEESTTSSHHHHHHHHTTTT
T ss_pred EEEEEcCCCCCHHHHHHHHHHHh
Confidence 47889999999999999977543
|
| >d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpX species: Helicobacter pylori [TaxId: 210]
Probab=96.54 E-value=0.00081 Score=46.90 Aligned_cols=25 Identities=20% Similarity=0.474 Sum_probs=21.4
Q ss_pred CCCeeEEEEEcCCCCcHHHHHHHHh
Q 030504 10 DYPSFKLVIVGDGGTGKTTFVKRHL 34 (176)
Q Consensus 10 ~~~~~~i~i~G~~~~GKttl~~~~~ 34 (176)
+.+.-+++++||+|||||-|.+++.
T Consensus 65 ~~p~~niLfiGPTGvGKTElAk~LA 89 (364)
T d1um8a_ 65 ELSKSNILLIGPTGSGKTLMAQTLA 89 (364)
T ss_dssp TCCCCCEEEECCTTSSHHHHHHHHH
T ss_pred cCCCcceeeeCCCCccHHHHHHHHH
Confidence 4456789999999999999999864
|
| >d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Lactobacillus casei [TaxId: 1582]
Probab=96.53 E-value=0.0009 Score=41.60 Aligned_cols=26 Identities=23% Similarity=0.419 Sum_probs=21.4
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCCC
Q 030504 13 SFKLVIVGDGGTGKTTFVKRHLTGEF 38 (176)
Q Consensus 13 ~~~i~i~G~~~~GKttl~~~~~~~~~ 38 (176)
..-|++.|++|+||||++..+....+
T Consensus 14 g~gvl~~G~sG~GKStlal~l~~~g~ 39 (176)
T d1kkma_ 14 GLGVLITGDSGVGKSETALELVQRGH 39 (176)
T ss_dssp TEEEEEECCTTSCHHHHHHHHHHTTC
T ss_pred CEEEEEEeCCCCCHHHHHHHHHHcCC
Confidence 34689999999999999999775443
|
| >d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=96.50 E-value=0.00072 Score=44.27 Aligned_cols=24 Identities=21% Similarity=0.194 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCC
Q 030504 15 KLVIVGDGGTGKTTFVKRHLTGEF 38 (176)
Q Consensus 15 ~i~i~G~~~~GKttl~~~~~~~~~ 38 (176)
=++|.|++|+|||+|..+|+....
T Consensus 38 ~~li~G~pGsGKT~~~lq~~~~~~ 61 (254)
T d1pzna2 38 ITEVFGEFGSGKTQLAHTLAVMVQ 61 (254)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHTT
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhh
Confidence 378899999999999999875443
|
| >d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=96.47 E-value=0.0008 Score=42.82 Aligned_cols=20 Identities=35% Similarity=0.522 Sum_probs=17.5
Q ss_pred EEEEEcCCCCcHHHHHHHHh
Q 030504 15 KLVIVGDGGTGKTTFVKRHL 34 (176)
Q Consensus 15 ~i~i~G~~~~GKttl~~~~~ 34 (176)
-|+|-|..||||||++..+.
T Consensus 2 lI~ieG~dGsGKST~~~~L~ 21 (208)
T d1gsia_ 2 LIAIEGVDGAGKRTLVEKLS 21 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 48899999999999999754
|
| >d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Mycoplasma pneumoniae [TaxId: 2104]
Probab=96.44 E-value=0.0011 Score=41.29 Aligned_cols=25 Identities=16% Similarity=0.372 Sum_probs=21.0
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCC
Q 030504 13 SFKLVIVGDGGTGKTTFVKRHLTGE 37 (176)
Q Consensus 13 ~~~i~i~G~~~~GKttl~~~~~~~~ 37 (176)
..-|++.|++|+||||++..+....
T Consensus 15 g~gvli~G~sG~GKS~lal~l~~~G 39 (177)
T d1knxa2 15 GVGVLLTGRSGIGKSECALDLINKN 39 (177)
T ss_dssp TEEEEEEESSSSSHHHHHHHHHTTT
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHcC
Confidence 4568999999999999999877543
|
| >d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CED-4, NB-ARC domain species: Caenorhabditis elegans [TaxId: 6239]
Probab=96.43 E-value=0.00082 Score=45.03 Aligned_cols=23 Identities=35% Similarity=0.644 Sum_probs=19.2
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhc
Q 030504 13 SFKLVIVGDGGTGKTTFVKRHLT 35 (176)
Q Consensus 13 ~~~i~i~G~~~~GKttl~~~~~~ 35 (176)
..-|.|.|.+|+|||||+..+..
T Consensus 44 ~~~v~I~GmgGiGKTtLA~~v~~ 66 (277)
T d2a5yb3 44 SFFLFLHGRAGSGKSVIASQALS 66 (277)
T ss_dssp SEEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 34578999999999999998653
|
| >d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein Ygr205W species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.41 E-value=0.0017 Score=43.64 Aligned_cols=25 Identities=16% Similarity=0.159 Sum_probs=20.8
Q ss_pred CCCCeeEEEEEcCCCCcHHHHHHHH
Q 030504 9 VDYPSFKLVIVGDGGTGKTTFVKRH 33 (176)
Q Consensus 9 ~~~~~~~i~i~G~~~~GKttl~~~~ 33 (176)
....++=|.|-|.+|||||||...+
T Consensus 23 ~~~~P~iIGi~G~qGSGKSTl~~~l 47 (286)
T d1odfa_ 23 GNKCPLFIFFSGPQGSGKSFTSIQI 47 (286)
T ss_dssp TCCSCEEEEEECCTTSSHHHHHHHH
T ss_pred CCCCCEEEEeECCCCCCHHHHHHHH
Confidence 3456788999999999999998764
|
| >d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.36 E-value=0.001 Score=44.28 Aligned_cols=22 Identities=32% Similarity=0.365 Sum_probs=19.2
Q ss_pred eeEEEEEcCCCCcHHHHHHHHh
Q 030504 13 SFKLVIVGDGGTGKTTFVKRHL 34 (176)
Q Consensus 13 ~~~i~i~G~~~~GKttl~~~~~ 34 (176)
.-.|++.|++|+|||+|++.+.
T Consensus 41 ~~giLL~Gp~GtGKT~l~~ala 62 (265)
T d1r7ra3 41 SKGVLFYGPPGCGKTLLAKAIA 62 (265)
T ss_dssp CCEEEEBCCTTSSHHHHHHHHH
T ss_pred CCeEEEECCCCCcchhHHHHHH
Confidence 3469999999999999999854
|
| >d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Escherichia coli [TaxId: 562]
Probab=96.30 E-value=0.0011 Score=42.27 Aligned_cols=19 Identities=42% Similarity=0.464 Sum_probs=16.9
Q ss_pred EEEEcCCCCcHHHHHHHHh
Q 030504 16 LVIVGDGGTGKTTFVKRHL 34 (176)
Q Consensus 16 i~i~G~~~~GKttl~~~~~ 34 (176)
|+|-|..||||||+++.+.
T Consensus 5 IviEG~dGsGKsT~~~~L~ 23 (210)
T d4tmka_ 5 IVIEGLEGAGKTTARNVVV 23 (210)
T ss_dssp EEEEECTTSCHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 7788999999999999854
|
| >d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Staphylococcus xylosus [TaxId: 1288]
Probab=96.26 E-value=0.0015 Score=40.28 Aligned_cols=27 Identities=22% Similarity=0.348 Sum_probs=21.8
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHhcCCC
Q 030504 12 PSFKLVIVGDGGTGKTTFVKRHLTGEF 38 (176)
Q Consensus 12 ~~~~i~i~G~~~~GKttl~~~~~~~~~ 38 (176)
...-|++.|++|+||||+...+....+
T Consensus 14 ~g~gvli~G~sg~GKS~la~~l~~~g~ 40 (169)
T d1ko7a2 14 YGVGVLITGDSGIGKSETALELIKRGH 40 (169)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHTTC
T ss_pred CCEEEEEEeCCCCCHHHHHHHHHHcCC
Confidence 345699999999999999988775543
|
| >d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ATPase subunit of magnesium chelatase, BchI species: Rhodobacter capsulatus [TaxId: 1061]
Probab=96.20 E-value=0.00065 Score=46.72 Aligned_cols=21 Identities=38% Similarity=0.537 Sum_probs=18.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHh
Q 030504 14 FKLVIVGDGGTGKTTFVKRHL 34 (176)
Q Consensus 14 ~~i~i~G~~~~GKttl~~~~~ 34 (176)
-.+++.|++|+|||+|++++.
T Consensus 29 h~vLl~G~pG~GKT~lar~~~ 49 (333)
T d1g8pa_ 29 GGVLVFGDRGTGKSTAVRALA 49 (333)
T ss_dssp CCEEEECCGGGCTTHHHHHHH
T ss_pred CeEEEECCCCccHHHHHHHHH
Confidence 369999999999999999864
|
| >d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Papillomavirus large T antigen helicase domain species: Simian virus 40 [TaxId: 10633]
Probab=96.19 E-value=0.0016 Score=45.27 Aligned_cols=22 Identities=27% Similarity=0.247 Sum_probs=19.2
Q ss_pred eeEEEEEcCCCCcHHHHHHHHh
Q 030504 13 SFKLVIVGDGGTGKTTFVKRHL 34 (176)
Q Consensus 13 ~~~i~i~G~~~~GKttl~~~~~ 34 (176)
.-.+++.||||+|||+|+..+.
T Consensus 154 ~~~~~~~g~~~~gk~~~~~~~~ 175 (362)
T d1svma_ 154 KRYWLFKGPIDSGKTTLAAALL 175 (362)
T ss_dssp CCEEEEECSTTSSHHHHHHHHH
T ss_pred cCeEEEECCCCCCHHHHHHHHH
Confidence 3479999999999999999855
|
| >d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=96.17 E-value=0.0015 Score=42.55 Aligned_cols=23 Identities=35% Similarity=0.528 Sum_probs=19.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcC
Q 030504 14 FKLVIVGDGGTGKTTFVKRHLTG 36 (176)
Q Consensus 14 ~~i~i~G~~~~GKttl~~~~~~~ 36 (176)
-=++|.|++|+|||+|+.++..+
T Consensus 27 sl~li~G~pGsGKT~l~~qia~~ 49 (242)
T d1tf7a2 27 SIILATGATGTGKTLLVSRFVEN 49 (242)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHH
Confidence 34788999999999999998755
|
| >d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpA, an Hsp100 chaperone, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=96.17 E-value=0.0022 Score=43.70 Aligned_cols=25 Identities=24% Similarity=0.320 Sum_probs=20.4
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHhc
Q 030504 11 YPSFKLVIVGDGGTGKTTFVKRHLT 35 (176)
Q Consensus 11 ~~~~~i~i~G~~~~GKttl~~~~~~ 35 (176)
.+.-.++++|++|+|||.|+..+..
T Consensus 50 ~p~~~~lf~Gp~GvGKT~lak~la~ 74 (315)
T d1r6bx3 50 KPVGSFLFAGPTGVGKTEVTVQLSK 74 (315)
T ss_dssp SCSEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCceEEEEECCCcchhHHHHHHHHh
Confidence 3444799999999999999998653
|
| >d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxycytidine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.11 E-value=0.0014 Score=42.54 Aligned_cols=20 Identities=40% Similarity=0.519 Sum_probs=17.8
Q ss_pred EEEEEcCCCCcHHHHHHHHh
Q 030504 15 KLVIVGDGGTGKTTFVKRHL 34 (176)
Q Consensus 15 ~i~i~G~~~~GKttl~~~~~ 34 (176)
.|+|-|..||||||+++.+.
T Consensus 4 ~I~ieG~dGsGKST~~~~L~ 23 (241)
T d1p5zb_ 4 KISIEGNIAAGKSTFVNILK 23 (241)
T ss_dssp EEEEECSTTSSHHHHHTTTG
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 58999999999999999744
|
| >d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Meiotic recombination protein DMC1/LIM15 homolog species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.07 E-value=0.0018 Score=42.24 Aligned_cols=22 Identities=23% Similarity=0.135 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 030504 15 KLVIVGDGGTGKTTFVKRHLTG 36 (176)
Q Consensus 15 ~i~i~G~~~~GKttl~~~~~~~ 36 (176)
=++|.|++|+|||+|..+|+..
T Consensus 39 ~~~i~G~~GsGKT~lalq~~~~ 60 (258)
T d1v5wa_ 39 ITEAFGEFRTGKTQLSHTLCVT 60 (258)
T ss_dssp EEEEECCTTCTHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999999998753
|
| >d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.06 E-value=0.0017 Score=41.50 Aligned_cols=19 Identities=26% Similarity=0.457 Sum_probs=16.1
Q ss_pred EEEEcCCCCcHHHHHHHHh
Q 030504 16 LVIVGDGGTGKTTFVKRHL 34 (176)
Q Consensus 16 i~i~G~~~~GKttl~~~~~ 34 (176)
|+|-|..||||||++..+.
T Consensus 6 I~ieG~dGsGKsT~~~~L~ 24 (209)
T d1nn5a_ 6 IVLEGVDRAGKSTQSRKLV 24 (209)
T ss_dssp EEEEESTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 6777999999999888743
|
| >d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Phosphoribulokinase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=96.06 E-value=0.0008 Score=45.22 Aligned_cols=19 Identities=21% Similarity=0.440 Sum_probs=14.4
Q ss_pred EEEEcCCCCcHHHHHHHHh
Q 030504 16 LVIVGDGGTGKTTFVKRHL 34 (176)
Q Consensus 16 i~i~G~~~~GKttl~~~~~ 34 (176)
|+|.|.+||||||+.+.|.
T Consensus 7 IgIaG~SGSGKTTva~~l~ 25 (288)
T d1a7ja_ 7 ISVTGSSGAGTSTVKHTFD 25 (288)
T ss_dssp EEEESCC---CCTHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHH
Confidence 9999999999999998754
|
| >d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=96.01 E-value=0.0019 Score=41.95 Aligned_cols=23 Identities=22% Similarity=0.229 Sum_probs=19.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 030504 15 KLVIVGDGGTGKTTFVKRHLTGE 37 (176)
Q Consensus 15 ~i~i~G~~~~GKttl~~~~~~~~ 37 (176)
=++|.|++|+|||+|+.++..+-
T Consensus 36 l~~i~G~~G~GKT~~~l~~a~~~ 58 (258)
T d2i1qa2 36 VTEFAGVFGSGKTQIMHQSCVNL 58 (258)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHT
T ss_pred EEEEEeCCCCCHHHHHHHHHHHH
Confidence 37889999999999999987543
|
| >d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cell division protein MukB species: Escherichia coli [TaxId: 562]
Probab=95.94 E-value=0.00031 Score=44.40 Aligned_cols=18 Identities=28% Similarity=0.556 Sum_probs=15.8
Q ss_pred EEEcCCCCcHHHHHHHHh
Q 030504 17 VIVGDGGTGKTTFVKRHL 34 (176)
Q Consensus 17 ~i~G~~~~GKttl~~~~~ 34 (176)
+|+|+.|+|||||+.++.
T Consensus 28 vi~G~NGsGKStil~Ai~ 45 (222)
T d1qhla_ 28 TLSGGNGAGKSTTMAAFV 45 (222)
T ss_dssp HHHSCCSHHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHH
Confidence 567999999999999864
|
| >d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Escherichia coli [TaxId: 562]
Probab=95.94 E-value=0.0031 Score=40.21 Aligned_cols=22 Identities=23% Similarity=0.469 Sum_probs=18.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 030504 14 FKLVIVGDGGTGKTTFVKRHLT 35 (176)
Q Consensus 14 ~~i~i~G~~~~GKttl~~~~~~ 35 (176)
+=|.|.|..||||||+.+.|..
T Consensus 4 ~iIgitG~igSGKStv~~~l~~ 25 (208)
T d1vhta_ 4 YIVALTGGIGSGKSTVANAFAD 25 (208)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEEECCCcCCHHHHHHHHHH
Confidence 5578999999999999997653
|
| >d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Thermotoga maritima [TaxId: 2336]
Probab=95.88 E-value=0.0015 Score=44.06 Aligned_cols=17 Identities=35% Similarity=0.696 Sum_probs=15.2
Q ss_pred EEEcCCCCcHHHHHHHH
Q 030504 17 VIVGDGGTGKTTFVKRH 33 (176)
Q Consensus 17 ~i~G~~~~GKttl~~~~ 33 (176)
+++|+.|||||+++.++
T Consensus 28 vlvG~NgsGKS~iL~Ai 44 (308)
T d1e69a_ 28 AIVGPNGSGKSNIIDAI 44 (308)
T ss_dssp EEECCTTTCSTHHHHHH
T ss_pred EEECCCCCcHHHHHHHH
Confidence 67899999999999875
|
| >d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Haemophilus influenzae [TaxId: 727]
Probab=95.86 E-value=0.0032 Score=40.00 Aligned_cols=21 Identities=29% Similarity=0.441 Sum_probs=18.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHh
Q 030504 14 FKLVIVGDGGTGKTTFVKRHL 34 (176)
Q Consensus 14 ~~i~i~G~~~~GKttl~~~~~ 34 (176)
+=|.|.|..||||||+++.|.
T Consensus 3 ~iIgITG~igSGKStv~~~l~ 23 (205)
T d1jjva_ 3 YIVGLTGGIGSGKTTIANLFT 23 (205)
T ss_dssp EEEEEECSTTSCHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHH
Confidence 568899999999999998754
|
| >d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta prime subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Probab=95.73 E-value=0.0031 Score=40.21 Aligned_cols=22 Identities=18% Similarity=0.223 Sum_probs=19.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 030504 14 FKLVIVGDGGTGKTTFVKRHLT 35 (176)
Q Consensus 14 ~~i~i~G~~~~GKttl~~~~~~ 35 (176)
-.+++.|++|+||||++..+..
T Consensus 25 h~lLl~Gp~G~GKtt~a~~~a~ 46 (207)
T d1a5ta2 25 HALLIQALPGMGDDALIYALSR 46 (207)
T ss_dssp SEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHH
Confidence 3599999999999999997654
|
| >d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=95.69 E-value=0.0031 Score=40.57 Aligned_cols=22 Identities=36% Similarity=0.516 Sum_probs=18.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 030504 14 FKLVIVGDGGTGKTTFVKRHLT 35 (176)
Q Consensus 14 ~~i~i~G~~~~GKttl~~~~~~ 35 (176)
--++|.|++|+|||+|+.+++.
T Consensus 27 ~~~~I~G~~G~GKT~la~~~~~ 48 (242)
T d1tf7a1 27 RSTLVSGTSGTGKTLFSIQFLY 48 (242)
T ss_dssp SEEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHH
Confidence 3478889999999999887653
|
| >d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta prime subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Probab=95.63 E-value=0.0034 Score=40.91 Aligned_cols=21 Identities=24% Similarity=0.414 Sum_probs=18.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 030504 15 KLVIVGDGGTGKTTFVKRHLT 35 (176)
Q Consensus 15 ~i~i~G~~~~GKttl~~~~~~ 35 (176)
.+++.|++|+||||+++.+..
T Consensus 36 ~~Ll~Gp~G~GKtt~a~~~~~ 56 (239)
T d1njfa_ 36 AYLFSGTRGVGKTSIARLLAK 56 (239)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHH
Confidence 478999999999999998653
|
| >d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Extracellular secretion NTPase EpsE species: Vibrio cholerae [TaxId: 666]
Probab=95.59 E-value=0.0033 Score=44.31 Aligned_cols=22 Identities=27% Similarity=0.471 Sum_probs=19.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 030504 15 KLVIVGDGGTGKTTFVKRHLTG 36 (176)
Q Consensus 15 ~i~i~G~~~~GKttl~~~~~~~ 36 (176)
=|+|.|+.||||||.+..++..
T Consensus 160 liLvtGpTGSGKSTTl~~~l~~ 181 (401)
T d1p9ra_ 160 IILVTGPTGSGKSTTLYAGLQE 181 (401)
T ss_dssp EEEEECSTTSCHHHHHHHHHHH
T ss_pred eEEEEcCCCCCccHHHHHHhhh
Confidence 3999999999999999997753
|
| >d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: NTPase P4 species: Bacteriophage phi-12 [TaxId: 161736]
Probab=95.57 E-value=0.0038 Score=42.52 Aligned_cols=19 Identities=32% Similarity=0.616 Sum_probs=16.1
Q ss_pred EEEEcCCCCcHHHHHHHHh
Q 030504 16 LVIVGDGGTGKTTFVKRHL 34 (176)
Q Consensus 16 i~i~G~~~~GKttl~~~~~ 34 (176)
+++.|+||+|||.|++.+.
T Consensus 126 ~l~~G~pG~GKT~la~ala 144 (321)
T d1w44a_ 126 VIVTGKGNSGKTPLVHALG 144 (321)
T ss_dssp EEEECSSSSCHHHHHHHHH
T ss_pred EEEECCCCccHHHHHHHHH
Confidence 4557999999999999855
|
| >d1osna_ c.37.1.1 (A:) Thymidine kinase {Varicella-zoster virus [TaxId: 10335]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidine kinase species: Varicella-zoster virus [TaxId: 10335]
Probab=95.57 E-value=0.0029 Score=43.41 Aligned_cols=25 Identities=28% Similarity=0.396 Sum_probs=21.8
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHhc
Q 030504 11 YPSFKLVIVGDGGTGKTTFVKRHLT 35 (176)
Q Consensus 11 ~~~~~i~i~G~~~~GKttl~~~~~~ 35 (176)
+..++|.|=|.-||||||+++.+..
T Consensus 3 m~~lrI~IEG~iGsGKSTl~~~L~~ 27 (331)
T d1osna_ 3 MGVLRIYLDGAYGIGKTTAAEEFLH 27 (331)
T ss_dssp EEEEEEEEEESSSSCTTHHHHHHHH
T ss_pred ccceEEEEECCCCCCHHHHHHHHHH
Confidence 4678999999999999999998653
|
| >d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyguanosine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.53 E-value=0.0038 Score=40.50 Aligned_cols=21 Identities=43% Similarity=0.499 Sum_probs=18.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHh
Q 030504 14 FKLVIVGDGGTGKTTFVKRHL 34 (176)
Q Consensus 14 ~~i~i~G~~~~GKttl~~~~~ 34 (176)
--|+|=|..||||||+++.+.
T Consensus 3 k~IviEG~~GsGKST~~~~L~ 23 (241)
T d2ocpa1 3 RRLSIEGNIAVGKSTFVKLLT 23 (241)
T ss_dssp EEEEEEECTTSSHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHH
Confidence 358899999999999999855
|
| >d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Gene 4 protein (g4p, DNA primase), helicase domain species: Bacteriophage T7 [TaxId: 10760]
Probab=95.45 E-value=0.0043 Score=41.17 Aligned_cols=20 Identities=30% Similarity=0.692 Sum_probs=17.5
Q ss_pred EEEEcCCCCcHHHHHHHHhc
Q 030504 16 LVIVGDGGTGKTTFVKRHLT 35 (176)
Q Consensus 16 i~i~G~~~~GKttl~~~~~~ 35 (176)
++|.|.+|+|||+|+..+..
T Consensus 38 ~vi~G~~G~GKT~~~~~la~ 57 (277)
T d1cr2a_ 38 IMVTSGSGMGKSTFVRQQAL 57 (277)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEEeCCCCCHHHHHHHHHH
Confidence 67899999999999888664
|
| >d1tuea_ c.37.1.20 (A:) Replication protein E1 helicase domain {Human papillomavirus type 18 [TaxId: 333761]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication protein E1 helicase domain species: Human papillomavirus type 18 [TaxId: 333761]
Probab=95.34 E-value=0.0043 Score=39.21 Aligned_cols=24 Identities=29% Similarity=0.313 Sum_probs=20.2
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHh
Q 030504 11 YPSFKLVIVGDGGTGKTTFVKRHL 34 (176)
Q Consensus 11 ~~~~~i~i~G~~~~GKttl~~~~~ 34 (176)
+..-.+++.|++++|||.|+..++
T Consensus 51 PKkn~i~~~GP~~TGKS~f~~sl~ 74 (205)
T d1tuea_ 51 PKKNCLVFCGPANTGKSYFGMSFI 74 (205)
T ss_dssp TTCSEEEEESCGGGCHHHHHHHHH
T ss_pred CCceEEEEECCCCccHHHHHHHHH
Confidence 344679999999999999998855
|
| >d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.34 E-value=0.0049 Score=39.45 Aligned_cols=19 Identities=37% Similarity=0.345 Sum_probs=16.9
Q ss_pred EEEEcCCCCcHHHHHHHHh
Q 030504 16 LVIVGDGGTGKTTFVKRHL 34 (176)
Q Consensus 16 i~i~G~~~~GKttl~~~~~ 34 (176)
|+|=|..||||||+++.+.
T Consensus 6 I~iEG~DGsGKST~~~~L~ 24 (214)
T d1tmka_ 6 ILIEGLDRTGKTTQCNILY 24 (214)
T ss_dssp EEEEESTTSSHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHH
Confidence 7899999999999999754
|
| >d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.25 E-value=0.0045 Score=43.46 Aligned_cols=21 Identities=29% Similarity=0.643 Sum_probs=17.1
Q ss_pred CeeEEEEEcCCCCcHHHHHHHH
Q 030504 12 PSFKLVIVGDGGTGKTTFVKRH 33 (176)
Q Consensus 12 ~~~~i~i~G~~~~GKttl~~~~ 33 (176)
+.+++ |+|+.|+|||+++.++
T Consensus 25 ~~l~~-i~G~NGsGKS~ileAi 45 (427)
T d1w1wa_ 25 SNFTS-IIGPNGSGKSNMMDAI 45 (427)
T ss_dssp CSEEE-EECSTTSSHHHHHHHH
T ss_pred CCEEE-EECCCCCCHHHHHHHH
Confidence 34544 7799999999999986
|
| >d1e2ka_ c.37.1.1 (A:) Thymidine kinase {Herpes simplex virus type 1, different strains [TaxId: 10298]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidine kinase species: Herpes simplex virus type 1, different strains [TaxId: 10298]
Probab=95.13 E-value=0.0058 Score=41.76 Aligned_cols=23 Identities=30% Similarity=0.390 Sum_probs=20.2
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHh
Q 030504 12 PSFKLVIVGDGGTGKTTFVKRHL 34 (176)
Q Consensus 12 ~~~~i~i~G~~~~GKttl~~~~~ 34 (176)
.-++|.|=|.-|+||||+++.+.
T Consensus 3 ~~lrI~IEG~iGsGKTTl~~~La 25 (329)
T d1e2ka_ 3 TLLRVYIDGPHGMGKTTTTQLLV 25 (329)
T ss_dssp EEEEEEECSCTTSSHHHHHHHHT
T ss_pred CceEEEEECCcCCCHHHHHHHHH
Confidence 45789999999999999999854
|
| >d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric replicative helicase repA species: Escherichia coli [TaxId: 562]
Probab=95.06 E-value=0.0065 Score=40.12 Aligned_cols=19 Identities=26% Similarity=0.431 Sum_probs=16.6
Q ss_pred EEEEcCCCCcHHHHHHHHh
Q 030504 16 LVIVGDGGTGKTTFVKRHL 34 (176)
Q Consensus 16 i~i~G~~~~GKttl~~~~~ 34 (176)
.+|.|++|+|||+|+..+.
T Consensus 32 ~~i~G~~G~GKS~l~l~la 50 (274)
T d1nlfa_ 32 GALVSPGGAGKSMLALQLA 50 (274)
T ss_dssp EEEEESTTSSHHHHHHHHH
T ss_pred EEEEeCCCCCHHHHHHHHH
Confidence 6689999999999998764
|
| >d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4 [TaxId: 10331]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidine kinase species: Equine herpesvirus type 4 [TaxId: 10331]
Probab=95.02 E-value=0.0083 Score=41.09 Aligned_cols=23 Identities=22% Similarity=0.218 Sum_probs=20.4
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHh
Q 030504 12 PSFKLVIVGDGGTGKTTFVKRHL 34 (176)
Q Consensus 12 ~~~~i~i~G~~~~GKttl~~~~~ 34 (176)
..++|.|=|.-|+||||+++.+.
T Consensus 5 ~~~rI~iEG~iGsGKSTl~~~L~ 27 (333)
T d1p6xa_ 5 TIVRIYLDGVYGIGKSTTGRVMA 27 (333)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHH
T ss_pred ceEEEEEECCccCCHHHHHHHHH
Confidence 46899999999999999999854
|
| >d1g8fa3 c.37.1.15 (A:390-511) ATP sulfurylase C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ATP sulfurylase C-terminal domain domain: ATP sulfurylase C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.99 E-value=0.0074 Score=34.76 Aligned_cols=25 Identities=12% Similarity=0.122 Sum_probs=21.6
Q ss_pred CCCeeEEEEEcCCCCcHHHHHHHHh
Q 030504 10 DYPSFKLVIVGDGGTGKTTFVKRHL 34 (176)
Q Consensus 10 ~~~~~~i~i~G~~~~GKttl~~~~~ 34 (176)
+..-+.|.+.|..|+||+||.+.+.
T Consensus 3 ~kqgf~i~~tg~~~~gk~~ia~al~ 27 (122)
T d1g8fa3 3 PKQGFSIVLGNSLTVSREQLSIALL 27 (122)
T ss_dssp GGCCEEEEECTTCCSCHHHHHHHHH
T ss_pred CccceEEEEeCCCCCCHHHHHHHHH
Confidence 4456899999999999999999864
|
| >d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Thermus thermophilus [TaxId: 274]
Probab=94.92 E-value=0.0094 Score=40.50 Aligned_cols=24 Identities=29% Similarity=0.466 Sum_probs=19.1
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHhc
Q 030504 12 PSFKLVIVGDGGTGKTTFVKRHLT 35 (176)
Q Consensus 12 ~~~~i~i~G~~~~GKttl~~~~~~ 35 (176)
+.-.++++|++|+|||.++..+..
T Consensus 52 p~~~~lf~Gp~G~GKt~lak~la~ 75 (315)
T d1qvra3 52 PIGSFLFLGPTGVGKTELAKTLAA 75 (315)
T ss_dssp CSEEEEEBSCSSSSHHHHHHHHHH
T ss_pred CceEEEEECCCcchHHHHHHHHHH
Confidence 334688999999999999987543
|
| >d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Chromosomal replication initiation factor DnaA species: Aquifex aeolicus [TaxId: 63363]
Probab=94.85 E-value=0.0083 Score=38.36 Aligned_cols=19 Identities=37% Similarity=0.531 Sum_probs=17.2
Q ss_pred EEEEcCCCCcHHHHHHHHh
Q 030504 16 LVIVGDGGTGKTTFVKRHL 34 (176)
Q Consensus 16 i~i~G~~~~GKttl~~~~~ 34 (176)
+.+.|++|+|||-|++.+.
T Consensus 39 l~l~G~~G~GKTHLl~A~~ 57 (213)
T d1l8qa2 39 IFIYGSVGTGKTHLLQAAG 57 (213)
T ss_dssp EEEECSSSSSHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHH
Confidence 7899999999999999854
|
| >d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DEXX box DNA helicase species: Escherichia coli, RepD [TaxId: 562]
Probab=94.78 E-value=0.0055 Score=41.07 Aligned_cols=16 Identities=25% Similarity=0.607 Sum_probs=13.5
Q ss_pred EEEEEcCCCCcHHHHH
Q 030504 15 KLVIVGDGGTGKTTFV 30 (176)
Q Consensus 15 ~i~i~G~~~~GKttl~ 30 (176)
.++|+|.+|+||||.+
T Consensus 16 ~~lI~g~aGTGKTt~l 31 (306)
T d1uaaa1 16 PCLVLAGAGSGKTRVI 31 (306)
T ss_dssp EEEECCCTTSCHHHHH
T ss_pred CEEEEeeCCccHHHHH
Confidence 3789999999999754
|
| >d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DEXX box DNA helicase species: Bacillus stearothermophilus, PcrA [TaxId: 1422]
Probab=94.74 E-value=0.0072 Score=40.82 Aligned_cols=16 Identities=38% Similarity=0.708 Sum_probs=13.6
Q ss_pred EEEEEcCCCCcHHHHH
Q 030504 15 KLVIVGDGGTGKTTFV 30 (176)
Q Consensus 15 ~i~i~G~~~~GKttl~ 30 (176)
.++|.|.+|+||||.+
T Consensus 26 ~~lV~g~aGSGKTt~l 41 (318)
T d1pjra1 26 PLLIMAGAGSGKTRVL 41 (318)
T ss_dssp CEEEEECTTSCHHHHH
T ss_pred CEEEEecCCccHHHHH
Confidence 3889999999999654
|
| >d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxynucleoside monophosphate kinase species: Bacteriophage T4 [TaxId: 10665]
Probab=94.64 E-value=0.01 Score=38.42 Aligned_cols=21 Identities=19% Similarity=0.245 Sum_probs=18.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 030504 15 KLVIVGDGGTGKTTFVKRHLT 35 (176)
Q Consensus 15 ~i~i~G~~~~GKttl~~~~~~ 35 (176)
-|+|.|..||||||+.+.|..
T Consensus 3 iIgiTG~igSGKsTva~~l~e 23 (241)
T d1deka_ 3 LIFLSGVKRSGKDTTADFIMS 23 (241)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 378999999999999997643
|
| >d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Transcription termination factor Rho, ATPase domain species: Escherichia coli [TaxId: 562]
Probab=94.50 E-value=0.0098 Score=39.78 Aligned_cols=22 Identities=23% Similarity=0.297 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 030504 15 KLVIVGDGGTGKTTFVKRHLTG 36 (176)
Q Consensus 15 ~i~i~G~~~~GKttl~~~~~~~ 36 (176)
|++|+|.+|+|||+|+..+..+
T Consensus 45 r~~I~g~~g~GKT~l~~~i~~~ 66 (289)
T d1xpua3 45 RGLIVAPPKAGKTMLLQNIAQS 66 (289)
T ss_dssp EEEEEECSSSSHHHHHHHHHHH
T ss_pred eeeEeCCCCCCHHHHHHHHHHH
Confidence 7999999999999999886643
|
| >d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Bacterial conjugative coupling protein TrwB species: Escherichia coli [TaxId: 562]
Probab=94.39 E-value=0.0086 Score=42.31 Aligned_cols=24 Identities=25% Similarity=0.439 Sum_probs=19.4
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHhc
Q 030504 12 PSFKLVIVGDGGTGKTTFVKRHLT 35 (176)
Q Consensus 12 ~~~~i~i~G~~~~GKttl~~~~~~ 35 (176)
....++|+|.+|+|||+++..++.
T Consensus 49 ~~~H~~I~G~tGsGKT~~l~~li~ 72 (433)
T d1e9ra_ 49 EPRHLLVNGATGTGKSVLLRELAY 72 (433)
T ss_dssp GGGCEEEEECTTSSHHHHHHHHHH
T ss_pred ccceEEEEeCCCCcHHHHHHHHHH
Confidence 345699999999999999876553
|
| >d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Escherichia coli [TaxId: 562]
Probab=93.81 E-value=0.02 Score=37.83 Aligned_cols=20 Identities=30% Similarity=0.458 Sum_probs=17.3
Q ss_pred EEEEcCCCCcHHHHHHHHhc
Q 030504 16 LVIVGDGGTGKTTFVKRHLT 35 (176)
Q Consensus 16 i~i~G~~~~GKttl~~~~~~ 35 (176)
+.+.|++++|||||+.++..
T Consensus 57 tei~G~~gsGKTtl~l~~~~ 76 (263)
T d1u94a1 57 VEIYGPESSGKTTLTLQVIA 76 (263)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEecCCCcHHHHHHHHHHH
Confidence 67889999999999988654
|
| >d1u0ja_ c.37.1.20 (A:) Rep 40 protein helicase domain {Adeno-associated virus 2, AAV2 [TaxId: 10804]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Rep 40 protein helicase domain species: Adeno-associated virus 2, AAV2 [TaxId: 10804]
Probab=93.66 E-value=0.026 Score=37.31 Aligned_cols=24 Identities=21% Similarity=0.199 Sum_probs=20.1
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHh
Q 030504 11 YPSFKLVIVGDGGTGKTTFVKRHL 34 (176)
Q Consensus 11 ~~~~~i~i~G~~~~GKttl~~~~~ 34 (176)
+..-.+.+.|++++|||+|++.+.
T Consensus 102 ~k~n~~~l~G~~~tGKS~f~~~i~ 125 (267)
T d1u0ja_ 102 GKRNTIWLFGPATTGKTNIAEAIA 125 (267)
T ss_dssp TTCCEEEEECSTTSSHHHHHHHHH
T ss_pred CccEEEEEEcCCCCCHHHHHHHHH
Confidence 345678899999999999999855
|
| >d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Exodeoxyribonuclease V alpha chain (RecD) species: Escherichia coli [TaxId: 562]
Probab=93.62 E-value=0.021 Score=39.46 Aligned_cols=18 Identities=56% Similarity=0.643 Sum_probs=15.2
Q ss_pred EEEEEcCCCCcHHHHHHH
Q 030504 15 KLVIVGDGGTGKTTFVKR 32 (176)
Q Consensus 15 ~i~i~G~~~~GKttl~~~ 32 (176)
-.+|.|++|+|||+++..
T Consensus 165 ~~vI~G~pGTGKTt~i~~ 182 (359)
T d1w36d1 165 ISVISGGPGTGKTTTVAK 182 (359)
T ss_dssp EEEEECCTTSTHHHHHHH
T ss_pred eEEEEcCCCCCceehHHH
Confidence 478889999999998754
|
| >d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1 ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Central domain of beta subunit of F1 ATP synthase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=93.14 E-value=0.026 Score=37.47 Aligned_cols=22 Identities=27% Similarity=0.570 Sum_probs=19.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 030504 15 KLVIVGDGGTGKTTFVKRHLTG 36 (176)
Q Consensus 15 ~i~i~G~~~~GKttl~~~~~~~ 36 (176)
|+.|+|.+|+|||+|+..+..+
T Consensus 70 r~~If~~~g~GKt~l~~~i~~~ 91 (276)
T d2jdid3 70 KIGLFGGAGVGKTVLIMELINN 91 (276)
T ss_dssp EEEEEECTTSSHHHHHHHHHHH
T ss_pred EEEeeCCCCCCHHHHHHHHHHH
Confidence 7999999999999998887644
|
| >d1cp2a_ c.37.1.10 (A:) Nitrogenase iron protein {Clostridium pasteurianum [TaxId: 1501]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Nitrogenase iron protein species: Clostridium pasteurianum [TaxId: 1501]
Probab=92.97 E-value=0.034 Score=36.51 Aligned_cols=87 Identities=13% Similarity=0.075 Sum_probs=46.5
Q ss_pred EEEEEEeCCCcccccc-ccccccccccEEEEEEeCCChhhhhhHHHHHHHHhhhc--CCCC-EEEEEeCCCCCccccCHH
Q 030504 62 IRFYCWDTAGQEKFGG-LRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC--ENIP-IVLCGNKVDVKNRQVKAK 137 (176)
Q Consensus 62 ~~~~~~D~~g~~~~~~-~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p-~liv~nK~Dl~~~~~~~~ 137 (176)
+.+.++|+|+.-.... ........+|.++++.++ +..++..+......+.... .+.+ .-+|.|+.+..... ..
T Consensus 116 ~D~viiD~p~~~~~~~~~~~~~~~~ad~vliv~~~-~~~sl~~~~~~~~~i~~~~~~~~~~~~~vv~N~~~~~~~~--~~ 192 (269)
T d1cp2a_ 116 LDYVFYDVLGDVVCGGFAMPIREGKAQEIYIVASG-EMMALYAANNISKGIQKYAKSGGVRLGGIICNSRKVANEY--EL 192 (269)
T ss_dssp CSEEEEEEECSSCSTTTTHHHHTTSCCEEEEEECS-SHHHHHHHHHHHHHHHHHBTTBBCEEEEEEEECCSSSCCH--HH
T ss_pred CCEEEeccCCccchhHHHHHHHhhccCceeeccch-hhhHHHHHHHHHHHHHhhccccceeccceEEeeecCCCcc--ch
Confidence 4578889876432221 122222456887777776 4556665555554444432 2333 34678998765532 22
Q ss_pred HHHHHHHcCCeEEE
Q 030504 138 QVTFHRKKNLQYYE 151 (176)
Q Consensus 138 ~~~~~~~~~~~~~~ 151 (176)
...+.+..+.+++.
T Consensus 193 ~~~~~~~~~~~~~~ 206 (269)
T d1cp2a_ 193 LDAFAKELGSQLIH 206 (269)
T ss_dssp HHHHHHHHTCCEEE
T ss_pred hhhhHhhcCCeEEE
Confidence 33455556655443
|
| >d1ny5a2 c.37.1.20 (A:138-384) Transcriptional activator sigm54 (NtrC1), C-terminal domain {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Transcriptional activator sigm54 (NtrC1), C-terminal domain species: Aquifex aeolicus [TaxId: 63363]
Probab=92.85 E-value=0.033 Score=36.30 Aligned_cols=21 Identities=24% Similarity=0.458 Sum_probs=17.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHh
Q 030504 14 FKLVIVGDGGTGKTTFVKRHL 34 (176)
Q Consensus 14 ~~i~i~G~~~~GKttl~~~~~ 34 (176)
..|+|.|++|+||+.+.+.+.
T Consensus 24 ~pvlI~Ge~GtGK~~~A~~ih 44 (247)
T d1ny5a2 24 CPVLITGESGVGKEVVARLIH 44 (247)
T ss_dssp SCEEEECSTTSSHHHHHHHHH
T ss_pred CCEEEECCCCcCHHHHHHHHH
Confidence 358999999999999998753
|
| >d1g3qa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Cell division regulator MinD species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=92.67 E-value=0.32 Score=30.69 Aligned_cols=71 Identities=11% Similarity=0.096 Sum_probs=46.8
Q ss_pred EEEEEEeCCCccccccccccccccccEEEEEEeCCChhhhhhHHHHHHHHhhhcCCCCEE-EEEeCCCCCccccCHH
Q 030504 62 IRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIV-LCGNKVDVKNRQVKAK 137 (176)
Q Consensus 62 ~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~l-iv~nK~Dl~~~~~~~~ 137 (176)
+.+.++|+++... ......+..+|.++++...+ ..+...+...+..+.+. +.|++ +|.||.+.........
T Consensus 112 ~d~IiiD~~~~~~--~~~~~~l~~aD~viiv~~~~-~~s~~~~~~~~~~~~~~--~~~~~giv~N~~~~~~~~~~~~ 183 (237)
T d1g3qa_ 112 FDFILIDCPAGLQ--LDAMSAMLSGEEALLVTNPE-ISCLTDTMKVGIVLKKA--GLAILGFVLNRYGRSDRDIPPE 183 (237)
T ss_dssp CSEEEEECCSSSS--HHHHHHHTTCSEEEEEECSC-HHHHHHHHHHHHHHHHT--TCEEEEEEEEEETSCTTCCCHH
T ss_pred CCEEEEccccccc--ccchhhhhhhhccccccccc-ceecchhhHHHHHHhhh--hhhhhhhhhcccccccchhhhH
Confidence 5688889887542 23334456789999998865 55556666666555543 77765 7889998765544443
|
| >d1c9ka_ c.37.1.11 (A:) Adenosylcobinamide kinase/adenosylcobinamide phosphate guanylyltransferase CobU {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Adenosylcobinamide kinase/adenosylcobinamide phosphate guanylyltransferase CobU species: Salmonella typhimurium [TaxId: 90371]
Probab=92.25 E-value=0.055 Score=33.44 Aligned_cols=21 Identities=14% Similarity=0.430 Sum_probs=18.3
Q ss_pred EEEEcCCCCcHHHHHHHHhcC
Q 030504 16 LVIVGDGGTGKTTFVKRHLTG 36 (176)
Q Consensus 16 i~i~G~~~~GKttl~~~~~~~ 36 (176)
++|+|-..||||.+..++...
T Consensus 2 iLVtGGarSGKS~~AE~l~~~ 22 (180)
T d1c9ka_ 2 ILVTGGARSGKSRHAEALIGD 22 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS
T ss_pred EEEECCCCccHHHHHHHHHhc
Confidence 689999999999999997643
|
| >d2olra1 c.91.1.1 (A:228-540) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: PEP carboxykinase C-terminal domain domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) species: Escherichia coli [TaxId: 562]
Probab=92.02 E-value=0.033 Score=37.49 Aligned_cols=16 Identities=50% Similarity=0.671 Sum_probs=13.9
Q ss_pred EEEcCCCCcHHHHHHH
Q 030504 17 VIVGDGGTGKTTFVKR 32 (176)
Q Consensus 17 ~i~G~~~~GKttl~~~ 32 (176)
++.|.+|+|||||...
T Consensus 18 lfFGLSGTGKTTLs~d 33 (313)
T d2olra1 18 VFFGLSGTGKTTLSTD 33 (313)
T ss_dssp EEECSTTSSHHHHHCC
T ss_pred EEEccCCCCcccceeC
Confidence 6899999999998753
|
| >d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: HCV helicase domain species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]
Probab=91.93 E-value=0.066 Score=31.07 Aligned_cols=22 Identities=23% Similarity=0.193 Sum_probs=16.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 030504 14 FKLVIVGDGGTGKTTFVKRHLT 35 (176)
Q Consensus 14 ~~i~i~G~~~~GKttl~~~~~~ 35 (176)
-..++.++.|+|||+++-.++.
T Consensus 9 ~~~ll~apTGsGKT~~~~~~~~ 30 (136)
T d1a1va1 9 QVAHLHAPTGSGKSTKVPAAYA 30 (136)
T ss_dssp EEEEEECCTTSCTTTHHHHHHH
T ss_pred CEEEEEeCCCCCHHHHHHHHHH
Confidence 3457789999999988766443
|
| >d1byia_ c.37.1.10 (A:) Dethiobiotin synthetase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Dethiobiotin synthetase species: Escherichia coli [TaxId: 562]
Probab=91.78 E-value=0.06 Score=33.83 Aligned_cols=64 Identities=9% Similarity=-0.064 Sum_probs=33.6
Q ss_pred cEEEEEEeCCChhhhhhHHHHHHHHhhhcCCCCEEEEEeCCCCCccccCHHHHHHHHHcCCeEEEe
Q 030504 87 QCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEI 152 (176)
Q Consensus 87 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 152 (176)
..+++|.+........ .......+... .....-+|.|+.|.......+....+.+.++++++.+
T Consensus 139 ~~v~~V~~~~~~~~~~-~~~~~~~~~~~-~~~~~gvv~N~~~~~~~~~~~~~~~l~~~~gi~vlG~ 202 (224)
T d1byia_ 139 LPVILVVGVKLGCINH-AMLTAQVIQHA-GLTLAGWVANDVTPPGKRHAEYMTTLTRMIPAPLLGE 202 (224)
T ss_dssp CCEEEEEECSTTHHHH-HHHHHHHHHHT-TCCEEEEEEECCSSCCTTHHHHHHHHHHHSSSCEEEE
T ss_pred ceeeEEEeeccchhHH-HHHHHHHHhcc-CCccEEEEEeCcCCCchHHHHHHHHHHHHhCCCEEEE
Confidence 4555666655443222 22222233222 2344577889988655433333446666678887753
|
| >d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=91.76 E-value=0.057 Score=34.88 Aligned_cols=18 Identities=33% Similarity=0.689 Sum_probs=16.5
Q ss_pred EEEEcCCCCcHHHHHHHH
Q 030504 16 LVIVGDGGTGKTTFVKRH 33 (176)
Q Consensus 16 i~i~G~~~~GKttl~~~~ 33 (176)
++|.|+..+||||+++.+
T Consensus 44 ~iiTGpN~~GKSt~lk~i 61 (234)
T d1wb9a2 44 LIITGPNMGGKSTYMRQT 61 (234)
T ss_dssp EEEECCTTSSHHHHHHHH
T ss_pred EEEeccCchhhHHHHHHH
Confidence 689999999999999984
|
| >d1j3ba1 c.91.1.1 (A:212-529) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: PEP carboxykinase C-terminal domain domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) species: Thermus thermophilus [TaxId: 274]
Probab=91.68 E-value=0.038 Score=37.33 Aligned_cols=17 Identities=47% Similarity=0.608 Sum_probs=14.5
Q ss_pred EEEEcCCCCcHHHHHHH
Q 030504 16 LVIVGDGGTGKTTFVKR 32 (176)
Q Consensus 16 i~i~G~~~~GKttl~~~ 32 (176)
-++.|.+|+|||||...
T Consensus 17 alffGLSGTGKTTLs~~ 33 (318)
T d1j3ba1 17 AVFFGLSGTGKTTLSTD 33 (318)
T ss_dssp EEEEECTTSCHHHHTCB
T ss_pred EEEEccCCCCccccccC
Confidence 48899999999998754
|
| >d1ii2a1 c.91.1.1 (A:201-523) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Trypanosoma cruzi [TaxId: 5693]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: PEP carboxykinase C-terminal domain domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) species: Trypanosoma cruzi [TaxId: 5693]
Probab=91.40 E-value=0.043 Score=37.08 Aligned_cols=17 Identities=47% Similarity=0.597 Sum_probs=14.5
Q ss_pred EEEEcCCCCcHHHHHHH
Q 030504 16 LVIVGDGGTGKTTFVKR 32 (176)
Q Consensus 16 i~i~G~~~~GKttl~~~ 32 (176)
-++.|.+|+|||||...
T Consensus 17 alfFGLSGTGKTTLs~d 33 (323)
T d1ii2a1 17 TVFFGLSGTGKTTLSAD 33 (323)
T ss_dssp EEEECCTTSSHHHHHCC
T ss_pred EEEEccCCCCcccceeC
Confidence 36999999999999853
|
| >d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=91.37 E-value=0.065 Score=34.34 Aligned_cols=18 Identities=33% Similarity=0.695 Sum_probs=16.6
Q ss_pred EEEEcCCCCcHHHHHHHH
Q 030504 16 LVIVGDGGTGKTTFVKRH 33 (176)
Q Consensus 16 i~i~G~~~~GKttl~~~~ 33 (176)
++|.|+..+||||+++.+
T Consensus 38 ~iiTGpN~~GKSt~lk~i 55 (224)
T d1ewqa2 38 VLITGPNMAGKSTFLRQT 55 (224)
T ss_dssp EEEESCSSSSHHHHHHHH
T ss_pred EEEECCCccccchhhhhh
Confidence 789999999999999984
|
| >d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Deinococcus radiodurans [TaxId: 1299]
Probab=90.89 E-value=0.076 Score=35.02 Aligned_cols=20 Identities=30% Similarity=0.310 Sum_probs=17.2
Q ss_pred EEEEcCCCCcHHHHHHHHhc
Q 030504 16 LVIVGDGGTGKTTFVKRHLT 35 (176)
Q Consensus 16 i~i~G~~~~GKttl~~~~~~ 35 (176)
+.+.|++++|||+|+..+..
T Consensus 60 tei~G~~~sGKT~l~l~~~~ 79 (268)
T d1xp8a1 60 TEIYGPESGGKTTLALAIVA 79 (268)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEecCCccchHHHHHHHHH
Confidence 67889999999999988654
|
| >d1xbta1 c.37.1.24 (A:18-150) Thymidine kinase, TK1, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Type II thymidine kinase domain: Thymidine kinase, TK1, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.72 E-value=0.53 Score=27.21 Aligned_cols=46 Identities=0% Similarity=0.051 Sum_probs=29.8
Q ss_pred cccccEEEEEEeCCChhhhhhHHHHHHHHhhhcCCCCEEEEEeCCCCCcccc
Q 030504 83 YIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQV 134 (176)
Q Consensus 83 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~~~~~ 134 (176)
+...|+++ + +...-|..+..+...+... ++++++.|-..|-.++..
T Consensus 71 ~~~~d~I~--I--DEaQFf~dl~~~~~~~~~~--~~~Viv~GLd~Df~~~~F 116 (133)
T d1xbta1 71 ALGVAVIG--I--DEGQFFPDIVEFCEAMANA--GKTVIVAALDGTFQRKPF 116 (133)
T ss_dssp HHTCSEEE--E--SSGGGCTTHHHHHHHHHHT--TCEEEEECCSBCTTSSBC
T ss_pred hcccceEE--e--ehhHHHHHHHHHHHHHHhc--CCcEEEEEeccccccCcc
Confidence 34556433 2 4455556676666666654 899999998888765443
|
| >d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=90.66 E-value=0.082 Score=34.87 Aligned_cols=19 Identities=32% Similarity=0.445 Sum_probs=16.5
Q ss_pred EEEEcCCCCcHHHHHHHHh
Q 030504 16 LVIVGDGGTGKTTFVKRHL 34 (176)
Q Consensus 16 i~i~G~~~~GKttl~~~~~ 34 (176)
+.+.|++++|||+|+..+.
T Consensus 63 ~e~~G~~~~GKT~l~l~~~ 81 (269)
T d1mo6a1 63 IEIYGPESSGKTTVALHAV 81 (269)
T ss_dssp EEEECSSSSSHHHHHHHHH
T ss_pred EEEecCCCcHHHHHHHHHH
Confidence 6788999999999987755
|
| >d1ihua2 c.37.1.10 (A:308-586) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Arsenite-translocating ATPase ArsA species: Escherichia coli [TaxId: 562]
Probab=90.42 E-value=0.085 Score=34.60 Aligned_cols=22 Identities=36% Similarity=0.653 Sum_probs=15.8
Q ss_pred CeeEEEEE-cCCCCcHHHHHHHH
Q 030504 12 PSFKLVIV-GDGGTGKTTFVKRH 33 (176)
Q Consensus 12 ~~~~i~i~-G~~~~GKttl~~~~ 33 (176)
+..+|+++ |-.|+||||+.-.+
T Consensus 18 ~~~~iii~sGKGGVGKTT~a~nL 40 (279)
T d1ihua2 18 NEHGLIMLMGKGGVGKTTMAAAI 40 (279)
T ss_dssp TSCEEEEEECSTTSSHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHH
Confidence 44565555 99999999985553
|
| >d2jdia3 c.37.1.11 (A:95-379) Central domain of alpha subunit of F1 ATP synthase {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Central domain of alpha subunit of F1 ATP synthase species: Cow (Bos taurus) [TaxId: 9913]
Probab=90.37 E-value=0.053 Score=36.10 Aligned_cols=22 Identities=32% Similarity=0.537 Sum_probs=18.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 030504 15 KLVIVGDGGTGKTTFVKRHLTG 36 (176)
Q Consensus 15 ~i~i~G~~~~GKttl~~~~~~~ 36 (176)
|+.|+|.+|+|||+|+..+..+
T Consensus 70 r~~If~~~g~GKt~ll~~~~~~ 91 (285)
T d2jdia3 70 RELIIGDRQTGKTSIAIDTIIN 91 (285)
T ss_dssp BCEEEESTTSSHHHHHHHHHHH
T ss_pred EEEeecCCCCChHHHHHHHHHh
Confidence 7999999999999998776543
|
| >d1ihua1 c.37.1.10 (A:1-296) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Arsenite-translocating ATPase ArsA species: Escherichia coli [TaxId: 562]
Probab=90.35 E-value=0.086 Score=34.78 Aligned_cols=39 Identities=18% Similarity=0.193 Sum_probs=24.9
Q ss_pred cEEEEEEeCCChhhhhhHHHHHHHHhhhcCCCCE-EEEEeCCC
Q 030504 87 QCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI-VLCGNKVD 128 (176)
Q Consensus 87 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~-liv~nK~D 128 (176)
..+++|-.+ +..+.......+..+... +.|+ -+|+||.-
T Consensus 199 t~~~lVt~p-e~~~~~~~~r~~~~l~~~--gi~~~~vVvN~v~ 238 (296)
T d1ihua1 199 TRLVLVARL-QKSTLQEVARTHLELAAI--GLKNQYLVINGVL 238 (296)
T ss_dssp EEEEEEEES-CHHHHHHHHHHHHHHHHH--TCCCEEEEEEEEC
T ss_pred ceeeEecCc-chhHHHHHHHHHHHHHhc--CCCceEEEEcCCc
Confidence 355666554 455667777777776665 6665 57779964
|
| >d2afhe1 c.37.1.10 (E:1-289) Nitrogenase iron protein {Azotobacter vinelandii [TaxId: 354]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Nitrogenase iron protein species: Azotobacter vinelandii [TaxId: 354]
Probab=90.26 E-value=0.099 Score=34.59 Aligned_cols=87 Identities=13% Similarity=0.164 Sum_probs=42.7
Q ss_pred EEEEEEeCCCccccccccccc-cccccEEEEEEeCCChhhhhhHHHHHHHHhhhc--CCCCE-EEEEeCCCCCccccCHH
Q 030504 62 IRFYCWDTAGQEKFGGLRDGY-YIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC--ENIPI-VLCGNKVDVKNRQVKAK 137 (176)
Q Consensus 62 ~~~~~~D~~g~~~~~~~~~~~-~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~-liv~nK~Dl~~~~~~~~ 137 (176)
+.+.++|+|+.-......... ...++.++++.. .+..+...+......+.... .+.++ -+|.|+.+.... .+.
T Consensus 119 ~D~iiiD~pp~~~~~~~~~~~~~~~a~~vlv~~~-~~~~s~~~~~~~~~~i~~~~~~~~~~~~gvv~n~~~~~~~--~~~ 195 (289)
T d2afhe1 119 LDFVFYDVLGDVVCGGFAMPIRENKAQEIYIVCS-GEMMAMYAANNISKGIVKYANSGSVRLGGLICNSRNTDRE--DEL 195 (289)
T ss_dssp CSEEEEEEECSSCCTTTTHHHHTTCCCEEEEEEC-SSHHHHHHHHHHHHHHHHHHTTSCCEEEEEEEECCCCTTH--HHH
T ss_pred CCeEeeccCCccCHHHHHHHHHhhccceeecccc-hhHHHHHHHHHHHHHHHhhhhcccccccceeehhhcchhh--HHH
Confidence 457788887643222211111 124555655544 34555555555544444332 34444 377898765432 122
Q ss_pred HHHHHHHcCCeEEE
Q 030504 138 QVTFHRKKNLQYYE 151 (176)
Q Consensus 138 ~~~~~~~~~~~~~~ 151 (176)
...+.+..+.+++.
T Consensus 196 ~~~~~~~~g~~vl~ 209 (289)
T d2afhe1 196 IIALANKLGTQMIH 209 (289)
T ss_dssp HHHHHHHHTSCEEE
T ss_pred HHHHHHHcCCeEEE
Confidence 33455556665554
|
| >d7mdha1 c.2.1.5 (A:23-197) Malate dehydrogenase {Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]
Probab=89.63 E-value=0.32 Score=29.68 Aligned_cols=27 Identities=15% Similarity=0.220 Sum_probs=18.4
Q ss_pred CCCeeEEEEEcC-CCCcHHHHHHHHhcCC
Q 030504 10 DYPSFKLVIVGD-GGTGKTTFVKRHLTGE 37 (176)
Q Consensus 10 ~~~~~~i~i~G~-~~~GKttl~~~~~~~~ 37 (176)
.++.+||+|+|. .++|-+.+. ++..|.
T Consensus 21 ~k~~~kV~I~GA~G~Ig~~l~~-~La~g~ 48 (175)
T d7mdha1 21 WKKLVNIAVSGAAGMISNHLLF-KLASGE 48 (175)
T ss_dssp CCCCEEEEEETTTSHHHHHHHH-HHHHTT
T ss_pred cCCCcEEEEECCCcHHHHHHHH-HHHcCc
Confidence 357899999996 667765444 455554
|
| >d1fx0a3 c.37.1.11 (A:97-372) Central domain of alpha subunit of F1 ATP synthase {Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Central domain of alpha subunit of F1 ATP synthase species: Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]
Probab=89.18 E-value=0.097 Score=34.64 Aligned_cols=22 Identities=32% Similarity=0.533 Sum_probs=18.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 030504 15 KLVIVGDGGTGKTTFVKRHLTG 36 (176)
Q Consensus 15 ~i~i~G~~~~GKttl~~~~~~~ 36 (176)
|+.|+|.+|+|||+|+.....+
T Consensus 69 r~~Ifg~~g~GKt~l~~~~~~~ 90 (276)
T d1fx0a3 69 RELIIGDRQTGKTAVATDTILN 90 (276)
T ss_dssp BCBEEESSSSSHHHHHHHHHHT
T ss_pred eEeeccCCCCChHHHHHHHHhh
Confidence 7899999999999998765443
|
| >d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III, N-domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: gamma subunit of DNA polymerase III, N-domain species: Thermotoga maritima [TaxId: 2336]
Probab=88.86 E-value=0.13 Score=32.19 Aligned_cols=24 Identities=8% Similarity=0.032 Sum_probs=20.2
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHhc
Q 030504 12 PSFKLVIVGDGGTGKTTFVKRHLT 35 (176)
Q Consensus 12 ~~~~i~i~G~~~~GKttl~~~~~~ 35 (176)
....+++.|++|+|||+++..+..
T Consensus 14 ~~~~~l~~G~~g~gk~~~a~~l~~ 37 (198)
T d2gnoa2 14 EGISILINGEDLSYPREVSLELPE 37 (198)
T ss_dssp SSEEEEEECSSSSHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHH
Confidence 345899999999999999987654
|
| >d5mdha1 c.2.1.5 (A:1-154) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=88.75 E-value=0.2 Score=29.85 Aligned_cols=20 Identities=10% Similarity=0.355 Sum_probs=15.9
Q ss_pred CeeEEEEEcC-CCCcHHHHHH
Q 030504 12 PSFKLVIVGD-GGTGKTTFVK 31 (176)
Q Consensus 12 ~~~~i~i~G~-~~~GKttl~~ 31 (176)
+++||.|+|. .++|.+....
T Consensus 2 ~p~KV~IiGA~G~VG~~la~~ 22 (154)
T d5mdha1 2 EPIRVLVTGAAGQIAYSLLYS 22 (154)
T ss_dssp CCEEEEESSTTSHHHHTTHHH
T ss_pred CceEEEEECCCCHHHHHHHHH
Confidence 5689999995 7899876554
|
| >d1eg7a_ c.37.1.10 (A:) Formyltetrahydrofolate synthetase {Moorella thermoacetica [TaxId: 1525]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Formyltetrahydrofolate synthetase species: Moorella thermoacetica [TaxId: 1525]
Probab=87.42 E-value=0.54 Score=33.80 Aligned_cols=88 Identities=14% Similarity=0.080 Sum_probs=56.3
Q ss_pred cccEEEEEEeCCC--------------------hhhhhhHHHHHHHHhhhcCCCCEEEEEeCCCCCccccCHHHHHHHHH
Q 030504 85 HGQCAIIMFDVTA--------------------RLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRK 144 (176)
Q Consensus 85 ~~~~~i~v~d~~~--------------------~~s~~~~~~~~~~~~~~~~~~p~liv~nK~Dl~~~~~~~~~~~~~~~ 144 (176)
..|++++|.-+.. ...+.++.+.++.+.+. +.|+++.+|+.....+.......+++.+
T Consensus 318 ~P~~~VlVaTvRALK~HGG~~~~~l~~eNl~Al~~G~~NL~rHIeNi~~f--GlpvVVAIN~F~tDTd~Ei~~i~~~~~~ 395 (549)
T d1eg7a_ 318 KPDATVIVATVRALKMHGGVPKSDLATENLEALREGFANLEKHIENIGKF--GVPAVVAINAFPTDTEAELNLLYELCAK 395 (549)
T ss_dssp CCCEEEEEECHHHHHHTTTCCGGGTTSCCHHHHHHHHHHHHHHHHHHHTT--TCCEEEEEECCTTCCHHHHHHHHHHTTT
T ss_pred CCceEEEEeehhhhhhcCCCChHHcCcccHHHHHHHHHHHHHHHHhhhhc--CCCeEEEeccCCccchhHHHHHHHHHhh
Confidence 4688888876541 12334555556666554 9999999999976555444455567777
Q ss_pred cCCeEEEeccCCCCChHHHHHHHHHHHhcC
Q 030504 145 KNLQYYEISAKSNYNFEKPFLYLARKLAGS 174 (176)
Q Consensus 145 ~~~~~~~~S~~~~~~v~~~~~~l~~~i~~~ 174 (176)
.++..-..=++-|+|-.++-+.+++.+.+.
T Consensus 396 ~g~~~a~~wa~GG~Ga~dLA~~Vv~a~e~~ 425 (549)
T d1eg7a_ 396 AGAEVALSWAKGGEGGLELARKVLQTLESR 425 (549)
T ss_dssp SEEEEECCTTTGGGGGHHHHHHHHHHHHHS
T ss_pred cCcceeeecccCccchHHHHHHHHHHHhcc
Confidence 666543333455567777777777776543
|
| >d2b8ta1 c.37.1.24 (A:11-149) Thymidine kinase, TK1, N-terminal domain {Ureaplasma urealyticum [TaxId: 2130]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Type II thymidine kinase domain: Thymidine kinase, TK1, N-terminal domain species: Ureaplasma urealyticum [TaxId: 2130]
Probab=87.18 E-value=0.2 Score=29.37 Aligned_cols=28 Identities=11% Similarity=0.144 Sum_probs=18.3
Q ss_pred HHHHHHhhhcCCCCEEEEEeCCCCCccccC
Q 030504 106 TWHRDLCRVCENIPIVLCGNKVDVKNRQVK 135 (176)
Q Consensus 106 ~~~~~~~~~~~~~p~liv~nK~Dl~~~~~~ 135 (176)
.....+... ++++++.|-..|-.++...
T Consensus 97 ~~~~~~~~~--g~~Viv~GLd~Df~~~~F~ 124 (139)
T d2b8ta1 97 EVANILAEN--GFVVIISGLDKNFKGEPFG 124 (139)
T ss_dssp HHHHHHHHT--TCEEEEECCSBCTTSSBCT
T ss_pred HHHHHHHhc--CceEEEEEeccccccCcCc
Confidence 333444443 8899999888887665543
|
| >d1wp9a1 c.37.1.19 (A:1-200) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: putative ATP-dependent RNA helicase PF2015 species: Pyrococcus furiosus [TaxId: 2261]
Probab=86.96 E-value=0.21 Score=30.75 Aligned_cols=17 Identities=35% Similarity=0.360 Sum_probs=13.8
Q ss_pred EEEEEcCCCCcHHHHHH
Q 030504 15 KLVIVGDGGTGKTTFVK 31 (176)
Q Consensus 15 ~i~i~G~~~~GKttl~~ 31 (176)
+++++++.|+|||.+..
T Consensus 25 n~lv~~pTGsGKT~i~~ 41 (200)
T d1wp9a1 25 NCLIVLPTGLGKTLIAM 41 (200)
T ss_dssp CEEEECCTTSCHHHHHH
T ss_pred CeEEEeCCCCcHHHHHH
Confidence 57899999999996433
|
| >d1mlda1 c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=86.04 E-value=1.7 Score=25.31 Aligned_cols=22 Identities=23% Similarity=0.436 Sum_probs=15.5
Q ss_pred EEEEEcC-CCCcHHHHHHHHhcCC
Q 030504 15 KLVIVGD-GGTGKTTFVKRHLTGE 37 (176)
Q Consensus 15 ~i~i~G~-~~~GKttl~~~~~~~~ 37 (176)
||.|+|. ..+| +++...+....
T Consensus 2 Kv~IiGA~G~VG-~~~A~~l~~~~ 24 (144)
T d1mlda1 2 KVAVLGASGGIG-QPLSLLLKNSP 24 (144)
T ss_dssp EEEEETTTSTTH-HHHHHHHHTCT
T ss_pred eEEEECCCChHH-HHHHHHHHhCC
Confidence 8999995 8999 55555555443
|
| >d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: YFV helicase domain species: Yellow fever virus [TaxId: 11089]
Probab=85.90 E-value=0.12 Score=29.70 Aligned_cols=17 Identities=29% Similarity=0.272 Sum_probs=13.4
Q ss_pred eeEEEEEcCCCCcHHHH
Q 030504 13 SFKLVIVGDGGTGKTTF 29 (176)
Q Consensus 13 ~~~i~i~G~~~~GKttl 29 (176)
.-++++.+++|+|||..
T Consensus 7 ~~~~il~~~tGsGKT~~ 23 (140)
T d1yksa1 7 GMTTVLDFHPGAGKTRR 23 (140)
T ss_dssp TCEEEECCCTTSSTTTT
T ss_pred CCcEEEEcCCCCChhHH
Confidence 45678888999999943
|
| >d1guza1 c.2.1.5 (A:1-142) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Chlorobium vibrioforme [TaxId: 1098]
Probab=84.53 E-value=1.6 Score=25.26 Aligned_cols=21 Identities=29% Similarity=0.507 Sum_probs=15.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 030504 14 FKLVIVGDGGTGKTTFVKRHLT 35 (176)
Q Consensus 14 ~~i~i~G~~~~GKttl~~~~~~ 35 (176)
+||.|+|..++|.+ +...+..
T Consensus 1 mKI~IIGaG~VG~~-la~~l~~ 21 (142)
T d1guza1 1 MKITVIGAGNVGAT-TAFRLAE 21 (142)
T ss_dssp CEEEEECCSHHHHH-HHHHHHH
T ss_pred CEEEEECcCHHHHH-HHHHHHh
Confidence 58999998888887 4444443
|
| >d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Lactobacillus pentosus [TaxId: 1589]
Probab=84.14 E-value=0.89 Score=26.66 Aligned_cols=22 Identities=32% Similarity=0.445 Sum_probs=16.0
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHh
Q 030504 12 PSFKLVIVGDGGTGKTTFVKRHL 34 (176)
Q Consensus 12 ~~~~i~i~G~~~~GKttl~~~~~ 34 (176)
...||.|+|...+|-+. ...+.
T Consensus 4 ~~~KI~IIGaG~VG~~~-A~~l~ 25 (146)
T d1ez4a1 4 NHQKVVLVGDGAVGSSY-AFAMA 25 (146)
T ss_dssp TBCEEEEECCSHHHHHH-HHHHH
T ss_pred CCCEEEEECCCHHHHHH-HHHHH
Confidence 46799999998899764 44333
|
| >d1hyqa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Cell division regulator MinD species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=84.05 E-value=0.35 Score=30.42 Aligned_cols=82 Identities=5% Similarity=-0.077 Sum_probs=44.8
Q ss_pred EEEEEEeCCCccccccccccccccccEEEEEEeCCChhhhhhHHHHHHHHhhhcCCCC-EEEEEeCCCCCccccCHHHHH
Q 030504 62 IRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIP-IVLCGNKVDVKNRQVKAKQVT 140 (176)
Q Consensus 62 ~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p-~liv~nK~Dl~~~~~~~~~~~ 140 (176)
+.+.++|+|+.-. ......+..+|.+++|...+ ..+..........+.+. +.+ +-+|.||.+...... ....
T Consensus 110 ~D~viiD~~~~~~--~~~~~~l~~ad~v~~v~~~~-~~~~~~~~~~~~~~~~~--~~~~~~iv~N~~~~~~~~~--~~~~ 182 (232)
T d1hyqa_ 110 TDILLLDAPAGLE--RSAVIAIAAAQELLLVVNPE-ISSITDGLKTKIVAERL--GTKVLGVVVNRITTLGIEM--AKNE 182 (232)
T ss_dssp CSEEEEECCSSSS--HHHHHHHHHSSEEEEEECSS-HHHHHHHHHHHHHHHHH--TCEEEEEEEEEECTTTHHH--HHHH
T ss_pred cceeeeccccccc--chhHHHhhhhheeeeecccc-ccchhhhhhhhhhhhhc--ccccccccccccccccccc--hhhh
Confidence 4477888887542 22333456789999988864 44444444444444333 344 457789986543221 1223
Q ss_pred HHHHcCCeEE
Q 030504 141 FHRKKNLQYY 150 (176)
Q Consensus 141 ~~~~~~~~~~ 150 (176)
+.+..+.+++
T Consensus 183 i~~~~~~~~~ 192 (232)
T d1hyqa_ 183 IEAILEAKVI 192 (232)
T ss_dssp HHHHTTSCEE
T ss_pred HHhhcCCeEE
Confidence 4444555544
|
| >d2afhe1 c.37.1.10 (E:1-289) Nitrogenase iron protein {Azotobacter vinelandii [TaxId: 354]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Nitrogenase iron protein species: Azotobacter vinelandii [TaxId: 354]
Probab=83.59 E-value=4 Score=26.37 Aligned_cols=19 Identities=37% Similarity=0.600 Sum_probs=15.4
Q ss_pred EEEEEcCCCCcHHHHHHHH
Q 030504 15 KLVIVGDGGTGKTTFVKRH 33 (176)
Q Consensus 15 ~i~i~G~~~~GKttl~~~~ 33 (176)
+|++-|-.|+||||+.-.+
T Consensus 4 ~IaisgKGGVGKTT~a~NL 22 (289)
T d2afhe1 4 QCAIYGKGGIGKSTTTQNL 22 (289)
T ss_dssp EEEEEECTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 5778899999999976653
|
| >d2p6ra3 c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Hel308 helicase species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=83.46 E-value=0.13 Score=32.02 Aligned_cols=17 Identities=24% Similarity=0.298 Sum_probs=14.4
Q ss_pred eEEEEEcCCCCcHHHHH
Q 030504 14 FKLVIVGDGGTGKTTFV 30 (176)
Q Consensus 14 ~~i~i~G~~~~GKttl~ 30 (176)
-++++.+++|+|||+..
T Consensus 41 ~~~il~apTGsGKT~~a 57 (202)
T d2p6ra3 41 KNLLLAMPTAAGKTLLA 57 (202)
T ss_dssp SCEEEECSSHHHHHHHH
T ss_pred CCEEEEcCCCCchhHHH
Confidence 36899999999999754
|
| >d1lkxa_ c.37.1.9 (A:) Myosin S1, motor domain {Dictyostelium discoideum, class-I myosin MyoE [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Motor proteins domain: Myosin S1, motor domain species: Dictyostelium discoideum, class-I myosin MyoE [TaxId: 44689]
Probab=83.08 E-value=0.36 Score=36.17 Aligned_cols=19 Identities=37% Similarity=0.608 Sum_probs=16.3
Q ss_pred EEEEEcCCCCcHHHHHHHH
Q 030504 15 KLVIVGDGGTGKTTFVKRH 33 (176)
Q Consensus 15 ~i~i~G~~~~GKttl~~~~ 33 (176)
.|++.|++|||||.-...+
T Consensus 88 sIiisGeSGsGKTe~~k~i 106 (684)
T d1lkxa_ 88 CVIISGESGAGKTEASKKI 106 (684)
T ss_dssp EEEEECSTTSSHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHH
Confidence 5999999999999876654
|
| >d1y7ta1 c.2.1.5 (A:0-153) Malate dehydrogenase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Thermus thermophilus [TaxId: 274]
Probab=82.96 E-value=1.1 Score=26.50 Aligned_cols=26 Identities=19% Similarity=0.492 Sum_probs=18.0
Q ss_pred CeeEEEEEcC-CCCcHHHHHHHHhcCCC
Q 030504 12 PSFKLVIVGD-GGTGKTTFVKRHLTGEF 38 (176)
Q Consensus 12 ~~~~i~i~G~-~~~GKttl~~~~~~~~~ 38 (176)
+++||.|+|. .++|.+.... +..+..
T Consensus 3 ~p~KV~IiGA~G~VG~~~a~~-l~~~~l 29 (154)
T d1y7ta1 3 APVRVAVTGAAGQIGYSLLFR-IAAGEM 29 (154)
T ss_dssp CCEEEEESSTTSHHHHHHHHH-HHTTTT
T ss_pred CCCEEEEECCCCHHHHHHHHH-HHhccc
Confidence 5689999996 7899655444 454443
|
| >d1g3qa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Cell division regulator MinD species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=82.86 E-value=0.42 Score=30.08 Aligned_cols=19 Identities=53% Similarity=0.751 Sum_probs=14.7
Q ss_pred EEEE-cCCCCcHHHHHHHHh
Q 030504 16 LVIV-GDGGTGKTTFVKRHL 34 (176)
Q Consensus 16 i~i~-G~~~~GKttl~~~~~ 34 (176)
|+|. +..|+||||+.-.+.
T Consensus 5 Iav~~~kGGvGKTtia~nLA 24 (237)
T d1g3qa_ 5 ISIVSGKGGTGKTTVTANLS 24 (237)
T ss_dssp EEEECSSTTSSHHHHHHHHH
T ss_pred EEEECCCCCCcHHHHHHHHH
Confidence 6777 456899999987753
|
| >d1d0xa2 c.37.1.9 (A:2-33,A:80-759) Myosin S1, motor domain {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Motor proteins domain: Myosin S1, motor domain species: Dictyostelium discoideum [TaxId: 44689]
Probab=81.82 E-value=0.43 Score=35.92 Aligned_cols=20 Identities=40% Similarity=0.710 Sum_probs=16.7
Q ss_pred EEEEEcCCCCcHHHHHHHHh
Q 030504 15 KLVIVGDGGTGKTTFVKRHL 34 (176)
Q Consensus 15 ~i~i~G~~~~GKttl~~~~~ 34 (176)
.|++-|++|||||.-...++
T Consensus 127 sIiisGeSGaGKTe~~k~il 146 (712)
T d1d0xa2 127 SLLITGESGAGKTENTKKVI 146 (712)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred eEEEeCCCCCCHHHHHHHHH
Confidence 69999999999998766543
|
| >d1br2a2 c.37.1.9 (A:80-789) Myosin S1, motor domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Motor proteins domain: Myosin S1, motor domain species: Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]
Probab=81.30 E-value=0.45 Score=35.76 Aligned_cols=20 Identities=30% Similarity=0.606 Sum_probs=16.6
Q ss_pred EEEEEcCCCCcHHHHHHHHh
Q 030504 15 KLVIVGDGGTGKTTFVKRHL 34 (176)
Q Consensus 15 ~i~i~G~~~~GKttl~~~~~ 34 (176)
.|++-|++|||||.-...++
T Consensus 93 ~IiisGeSGaGKTe~~k~il 112 (710)
T d1br2a2 93 SILCTGESGAGKTENTKKVI 112 (710)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHH
Confidence 59999999999998766543
|
| >d2mysa2 c.37.1.9 (A:4-33,A:80-843) Myosin S1, motor domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Motor proteins domain: Myosin S1, motor domain species: Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]
Probab=81.11 E-value=0.46 Score=36.23 Aligned_cols=18 Identities=44% Similarity=0.791 Sum_probs=15.1
Q ss_pred EEEEEcCCCCcHHHHHHH
Q 030504 15 KLVIVGDGGTGKTTFVKR 32 (176)
Q Consensus 15 ~i~i~G~~~~GKttl~~~ 32 (176)
.|++-|++|||||.-...
T Consensus 125 sIiisGeSGaGKTe~~K~ 142 (794)
T d2mysa2 125 SILITGESGAGKTVNTKR 142 (794)
T ss_dssp EEEEEECTTSCHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHH
Confidence 599999999999965554
|
| >d2eyqa3 c.37.1.19 (A:546-778) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Transcription-repair coupling factor, TRCF species: Escherichia coli [TaxId: 562]
Probab=80.02 E-value=0.81 Score=29.23 Aligned_cols=22 Identities=32% Similarity=0.469 Sum_probs=17.7
Q ss_pred CeeEEEEEcCCCCcHHHHHHHH
Q 030504 12 PSFKLVIVGDGGTGKTTFVKRH 33 (176)
Q Consensus 12 ~~~~i~i~G~~~~GKttl~~~~ 33 (176)
.....++.|..|+|||-+.-+.
T Consensus 75 ~~~~~LL~GdvGsGKT~V~~~a 96 (233)
T d2eyqa3 75 LAMDRLVCGDVGFGKTEVAMRA 96 (233)
T ss_dssp SCCEEEEECCCCTTTHHHHHHH
T ss_pred CccCeEEEcCCCCCcHHHHHHH
Confidence 4567899999999999776653
|