Citrus Sinensis ID: 030508

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170------
Protein Sequence
MQMILSSSSSSLPIPSFPCKCFSTFHALRTFFPQKKHIVRCSSSHNLKDNGFHCKVKLKRRVVPFLLFSSGLFPTLSASGKTKSKNPYDEKRLLEQNKRMQKENSAPEGFPNFIREGFEVKVVTSENYTKRDSGLIYRDFEVGKGDCPKDGQQVFLLSSLEAISSCSCYDISIRAV
Secondary Structure (PSIPRED)
ccEEEcccccccccccccccccccccEEEEEEEccccEEEEEccccccccccHHHHHHHHHHHHHHHHHccccccccccccccccccHHHHHHHHHHHHHHHHccccccccHHHHcccEEEEEcccccEEccccEEEEEEccccccccccccEEEEEEccccccccEEEEEEEEEc
Secondary Structure Prediction (SSPRO)
ccEEEEcccccccccccccEEEEEEEEEcccccccccEEEEcccccccccccHHHHHHHHHHHHHHHHcccccccccccccccccccHcHHHHHHHHHHHHHHccccccccHHEHcccEEEEEcccccEEccccEEEEEEEEccccccccccEEEEEccHHHHcccccccEEEEEc
Coil and Loop (DISEMBL)
mqmilsssssslpipsfpckcfstfhalrtffpqkkhivrcssshnlkdngfhckvklkrRVVPFLlfssglfptlsasgktksknpydeKRLLEQNKRmqkensapegfpnfirEGFEVKVvtsenytkrdsgliyrdfevgkgdcpkdgqQVFLLSSLeaisscscydisirav
Flexible Loop (DISEMBL)
mqmilsssssslpipsFPCKCFSTFHALRTFFPQKKHIVRCSSSHNLKDNGFHCKVKLKRRVVPFLLFSsglfptlsasgktksknpydeKRLLEQNkrmqkensapegfpnfireGFEVKVvtsenytkrdsgliyRDFEVGKGDCPKDGQQVFLLSsleaisscscydisirav
Low Complexity Region (SEG)
MQMilsssssslpipsFPCKCFSTFHALRTFFPQKKHIVRCSSSHNLKDNGFHCKVKLKRRVVPFLLFSSGLFPTLSASGKTKSKNPYDEKRLLEQNKRMQKENSAPEGFPNFIREGFEVKVVTSENYTKRDSGLIYRDFEVGKGDCPKDGQQVFLLSSLEAISSCSCYDISIRAV
Disordered region (IsUnstruct)
**************PSFPCKCFSTFHALRTFFPQKKHIVRCSSSHNLKDNGFHCKVKLKRRVVPFLLFSSGLFPT***********************************PNFIREGFEVKVVTSENYTKRDSGLIYRDFEVGKGDCPKDGQQVFLLSSLEAISSCSCYDISI***
Disordered Region (DISOPRED)
*********SSLPIPSFPCKCFSTFHALRTFFPQKKH*************GFHCKVKLKRRVVPFLLFSSGLFPTL*****************************APEGFPNFIREGFEVKVVTSENYTKRDSGLIYRDFEVGKGDCPKDGQQVFLLSSLEAISSCSCYDISIRAV
Disordered Region (DISEMBL)
************PIPSFPCKCFSTFHALRTFFPQKKHIVRCSSSHNLKDNGFHCKVKLKRRVVPFLLFSSGLFPTLSAS********YDEKRLLEQNKRMQKENSAPEGFPNFIREGFEVKVVTSENYTKRDSGLIYRDFEVGKGDCPKDGQQVFLLSSLEAISSCSCYDISIRAV
Disordered Region (DISPRO)
********SSSLPIPSFPCKCFSTFHALRTFFPQKKHIVRCSSSHNLKDNGFHCKVKLKRRVVPFLLFSSGLFPTLSASGKTKSKNPYDEKRLLEQNKRMQKENSAPEGFPNFIREGFEVKVVTSENYTKRDSGLIYRDFEVGKGDCPKDGQQVFLLSSLEAISSCSCYDISIRAV
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MQMILSSSSSSLPIPSFPCKCFSTFHALRTFFPQKKHIVRCSSSHNLKDNGFHCKVKLKRRVVPFLLFSSGLFPTLSASGKTKSKNPYDEKRLLEQNKRMQKENSAPEGFPNFIREGFEVKVVTSENYTKRDSGLIYRDFEVGKGDCPKDGQQVFLLSSLEAISSCSCYDISIRAV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	176	2.2.26 [Sep-21-2011]
Q0WRJ7	242	Peptidyl-prolyl cis-trans	yes	no	0.613	0.446	0.637	2e-29

>sp|Q0WRJ7|FK202_ARATH Peptidyl-prolyl cis-trans isomerase FKBP20-2, chloroplastic OS=Arabidopsis thaliana GN=FKBP20-2 PE=1 SV=1

 Score =  128 bits (322), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 74/116 (63%), Positives = 89/116 (76%), Gaps = 8/116 (6%)

Query: 41  CSSSHNLKDNGFHCKVKLKRRVVPFLLFSSG--LFPTLSASGKTKSKNPYDEKRLLEQNK 98
           CS S   KD    C   L RR + ++L +S   L P LS+S KTKSK+PYDE+RLLEQNK
Sbjct: 32  CSLSEEPKD---QC---LSRRSLVYVLVASPCLLLPALSSSAKTKSKSPYDERRLLEQNK 85

Query: 99  RMQKENSAPEGFPNFIREGFEVKVVTSENYTKRDSGLIYRDFEVGKGDCPKDGQQV 154
           R+Q+EN+AP+ FPNF+REGFEVKV+ S+NY K DSGLIYRDF VG+GD PKDGQQV
Sbjct: 86  RIQRENNAPDEFPNFVREGFEVKVLASDNYIKADSGLIYRDFNVGQGDFPKDGQQV 141

PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides (By similarity). Involved in the accumulation of the PSII complex.
Arabidopsis thaliana (taxid: 3702)
EC: 5EC: .EC: 2EC: .EC: 1EC: .EC: 8

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	176
225453422	258	PREDICTED: FKBP-type peptidyl-prolyl cis	0.863	0.589	0.607	1e-44
255541078	265	fk506-binding protein, putative [Ricinus	0.659	0.437	0.692	2e-39
351726032	248	uncharacterized protein LOC100305486 [Gl	0.801	0.568	0.547	3e-37
224137178	210	predicted protein [Populus trichocarpa]	0.619	0.519	0.661	4e-37
388505048	246	unknown [Lotus japonicus]	0.738	0.528	0.580	8e-36
356520790	248	PREDICTED: FKBP-type peptidyl-prolyl cis	0.755	0.536	0.554	1e-35
449431986	260	PREDICTED: peptidyl-prolyl cis-trans iso	0.875	0.592	0.506	7e-35
297820896	244	immunophilin [Arabidopsis lyrata subsp.	0.613	0.442	0.655	1e-29
357122775	250	PREDICTED: FKBP-type peptidyl-prolyl cis	0.545	0.384	0.635	2e-28
388505134	160	unknown [Medicago truncatula]	0.585	0.643	0.586	3e-28

>gi|225453422|ref|XP_002274957.1| PREDICTED: FKBP-type peptidyl-prolyl cis-trans isomerase 6, chloroplastic [Vitis vinifera] gi|297734593|emb|CBI16644.3| unnamed protein product [Vitis vinifera]

 Score =  184 bits (467), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 96/158 (60%), Positives = 112/158 (70%), Gaps = 6/158 (3%)

Query: 3   MILSSSSSSLPIPSFPCKCFSTFHALRTFFPQKKHIVRCSSSHNLKDNG------FHCKV 56
           M+   +   LP P  P +  S    + +FF  KK I+ C SS+NLKD           + 
Sbjct: 1   MLWLPTHPLLPQPYIPYRYLSACRTVGSFFSLKKPILHCRSSYNLKDYREQKGCVLPYEE 60

Query: 57  KLKRRVVPFLLFSSGLFPTLSASGKTKSKNPYDEKRLLEQNKRMQKENSAPEGFPNFIRE 116
            L+RR++ F L SSG FPTLS+S KTKSKNPYDEKRLL+QNKR+QKEN+APE FPNF+RE
Sbjct: 61  NLRRRLLIFFLVSSGCFPTLSSSAKTKSKNPYDEKRLLQQNKRIQKENNAPEDFPNFVRE 120

Query: 117 GFEVKVVTSENYTKRDSGLIYRDFEVGKGDCPKDGQQV 154
           GFEVKVVT ENY   DSGLIYRDFEVGKGDCPK GQQV
Sbjct: 121 GFEVKVVTPENYITSDSGLIYRDFEVGKGDCPKAGQQV 158

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255541078|ref|XP_002511603.1| fk506-binding protein, putative [Ricinus communis] gi|223548783|gb|EEF50272.1| fk506-binding protein, putative [Ricinus communis]

 Score =  166 bits (421), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 88/127 (69%), Positives = 99/127 (77%), Gaps = 11/127 (8%)

Query: 35  KKHIVRCSSSHNLKDNGF--HCKVKLKRRVVPFLLFSSG-----LFPTLSASGKTKSKNP 87
           KK  VRC    +L+ NG+  HC+  L+RR   FLLF S      LF TL + GKTKSKNP
Sbjct: 36  KKSTVRCFDDDSLR-NGYLLHCEETLRRR---FLLFFSASSSVLLFQTLPSFGKTKSKNP 91

Query: 88  YDEKRLLEQNKRMQKENSAPEGFPNFIREGFEVKVVTSENYTKRDSGLIYRDFEVGKGDC 147
           YDE+RLLEQNKR+QKEN+AP+ FPNF+REGFEVKVVTSENY KRDSGLIYRDFEVG GDC
Sbjct: 92  YDERRLLEQNKRVQKENNAPDDFPNFVREGFEVKVVTSENYVKRDSGLIYRDFEVGNGDC 151

Query: 148 PKDGQQV 154
           PK GQQV
Sbjct: 152 PKAGQQV 158

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351726032|ref|NP_001236089.1| uncharacterized protein LOC100305486 [Glycine max] gi|255625657|gb|ACU13173.1| unknown [Glycine max]

 Score =  159 bits (403), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 87/159 (54%), Positives = 111/159 (69%), Gaps = 18/159 (11%)

Query: 3   MILSSSSSSLPIPSFPCKCFSTFHALRTFFPQKKHIVRCSSSHNLKD----NGF---HCK 55
           M+L+S  S+     FPC    T       F Q+K +    ++   KD    +G    H +
Sbjct: 1   MLLASFRSN-----FPCAVQGTV------FCQRKQLTHGCTNQKSKDYIVQDGCMLQHSE 49

Query: 56  VKLKRRVVPFLLFSSGLFPTLSASGKTKSKNPYDEKRLLEQNKRMQKENSAPEGFPNFIR 115
             L+R +   +L S+G+FPTLS+ GKTKSKNPYDEKRLL+QN+R+QKEN+APE FPNF+R
Sbjct: 50  KALRRTLFLSVLVSAGVFPTLSSYGKTKSKNPYDEKRLLQQNRRIQKENNAPEDFPNFVR 109

Query: 116 EGFEVKVVTSENYTKRDSGLIYRDFEVGKGDCPKDGQQV 154
           EGF+VKVV+S+NY K DSGLIYRDF VG+GDCPKDGQQV
Sbjct: 110 EGFQVKVVSSDNYIKSDSGLIYRDFVVGQGDCPKDGQQV 148

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224137178|ref|XP_002327057.1| predicted protein [Populus trichocarpa] gi|222835372|gb|EEE73807.1| predicted protein [Populus trichocarpa]

 Score =  159 bits (403), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 80/121 (66%), Positives = 89/121 (73%), Gaps = 12/121 (9%)

Query: 34  QKKHIVRCSSSHNLKDNGFHCKVKLKRRVVPFLLFSSGLFPTLSASGKTKSKNPYDEKRL 93
           Q  H+V C               KL+RR + F  FSSGL  T  + GKTKSKNPYDE+RL
Sbjct: 2   QNGHVVLCHEE------------KLRRRFLLFFSFSSGLLSTFPSYGKTKSKNPYDERRL 49

Query: 94  LEQNKRMQKENSAPEGFPNFIREGFEVKVVTSENYTKRDSGLIYRDFEVGKGDCPKDGQQ 153
           LEQNKR+QKEN+ PE FP+FIREGFEVKVV  ENY KRDSGLIYRDFEVG+GDCPKDGQQ
Sbjct: 50  LEQNKRIQKENNVPEDFPSFIREGFEVKVVAPENYIKRDSGLIYRDFEVGEGDCPKDGQQ 109

Query: 154 V 154
           V
Sbjct: 110 V 110

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388505048|gb|AFK40590.1| unknown [Lotus japonicus]

 Score =  155 bits (391), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 79/136 (58%), Positives = 101/136 (74%), Gaps = 6/136 (4%)

Query: 25  FHALRTFFPQKKHIV-----RCSSSHNLKDN-GFHCKVKLKRRVVPFLLFSSGLFPTLSA 78
           F    T F Q+K +      + S  + ++D+   H    L+R+++  +L S+G+FPTLS+
Sbjct: 10  FSVQGTIFSQRKQLTHRYTNQKSEEYPVQDSCILHSARALRRKLLLSVLVSTGVFPTLSS 69

Query: 79  SGKTKSKNPYDEKRLLEQNKRMQKENSAPEGFPNFIREGFEVKVVTSENYTKRDSGLIYR 138
            GKTK  NP++EKRLL+QNK++QK N APE FPNFIREGFEVKV++SENY K DSGLIYR
Sbjct: 70  YGKTKGINPFNEKRLLQQNKQIQKANYAPEDFPNFIREGFEVKVISSENYIKCDSGLIYR 129

Query: 139 DFEVGKGDCPKDGQQV 154
           DFEVGKGDCPKDGQQV
Sbjct: 130 DFEVGKGDCPKDGQQV 145

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356520790|ref|XP_003529043.1| PREDICTED: FKBP-type peptidyl-prolyl cis-trans isomerase 6, chloroplastic-like [Glycine max]

 Score =  154 bits (390), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 81/146 (55%), Positives = 100/146 (68%), Gaps = 13/146 (8%)

Query: 16  SFPCKCFSTFHALRTFFPQKKHIVRCSSSHNLKDNGF-------HCKVKLKRRVVPFLLF 68
           +FPC    T       F Q+K +         KD          H +  L+R +   +L 
Sbjct: 9   NFPCTVQGTI------FCQRKQLTHGCKDQKSKDYIVQDSCMLQHSEKALRRTLFLSVLV 62

Query: 69  SSGLFPTLSASGKTKSKNPYDEKRLLEQNKRMQKENSAPEGFPNFIREGFEVKVVTSENY 128
           S+G+FPTLS+ GKTKSKNPYDEKRLL+QN+R+QKEN+APE FPNF+REGF+VKVV+S+NY
Sbjct: 63  SAGVFPTLSSYGKTKSKNPYDEKRLLQQNRRIQKENNAPEDFPNFVREGFQVKVVSSDNY 122

Query: 129 TKRDSGLIYRDFEVGKGDCPKDGQQV 154
            K DSGLIYRDF VG+GD PKDGQQV
Sbjct: 123 VKSDSGLIYRDFVVGQGDFPKDGQQV 148

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449431986|ref|XP_004133781.1| PREDICTED: peptidyl-prolyl cis-trans isomerase FKBP20-2, chloroplastic-like [Cucumis sativus]

 Score =  152 bits (383), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 82/162 (50%), Positives = 107/162 (66%), Gaps = 8/162 (4%)

Query: 3   MILSSSSSSLP--IPSFPCKCFSTFHALRTFFPQKKHIVR---CSS-SHNLKDNGF--HC 54
           M+++ S+ SL     S   + FS     R F  Q K + R   C S +H+ ++N +    
Sbjct: 1   MLITCSTPSLTSSAHSLSYRAFSGCATSRAFITQTKQVQRYCSCQSFNHSSEENSYISLS 60

Query: 55  KVKLKRRVVPFLLFSSGLFPTLSASGKTKSKNPYDEKRLLEQNKRMQKENSAPEGFPNFI 114
               +R+++ F L ++ LFPT  +S KTK+KNPYDE+RLLEQNKR QKEN+AP  FP+F+
Sbjct: 61  NENSRRKILLFFLSTTALFPTRHSSAKTKNKNPYDERRLLEQNKRRQKENNAPVDFPSFV 120

Query: 115 REGFEVKVVTSENYTKRDSGLIYRDFEVGKGDCPKDGQQVFL 156
           REGFEVKV+  E+Y KRDSGLIY D EVG GDCPKDGQQV  
Sbjct: 121 REGFEVKVIAPESYVKRDSGLIYWDIEVGNGDCPKDGQQVIF 162

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297820896|ref|XP_002878331.1| immunophilin [Arabidopsis lyrata subsp. lyrata] gi|297324169|gb|EFH54590.1| immunophilin [Arabidopsis lyrata subsp. lyrata]

 Score =  134 bits (338), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 76/116 (65%), Positives = 90/116 (77%), Gaps = 8/116 (6%)

Query: 41  CSSSHNLKDNGFHCKVKLKRRVVPFLLFSSG--LFPTLSASGKTKSKNPYDEKRLLEQNK 98
           CS S   KD        L RR + ++L +S   LFP LS+S KTKSK+PYDE+RLLEQNK
Sbjct: 34  CSLSEEPKDQ------SLSRRSLVYVLVASPCLLFPALSSSAKTKSKSPYDERRLLEQNK 87

Query: 99  RMQKENSAPEGFPNFIREGFEVKVVTSENYTKRDSGLIYRDFEVGKGDCPKDGQQV 154
           R+Q+EN+AP+ FPNF+REGFEVKVV SENY K DSGLIYRDF+VG+GD PKDGQQV
Sbjct: 88  RIQRENNAPDEFPNFVREGFEVKVVASENYIKADSGLIYRDFDVGQGDSPKDGQQV 143

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357122775|ref|XP_003563090.1| PREDICTED: FKBP-type peptidyl-prolyl cis-trans isomerase 6, chloroplastic-like isoform 1 [Brachypodium distachyon]

 Score =  130 bits (327), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 61/96 (63%), Positives = 73/96 (76%)

Query: 59  KRRVVPFLLFSSGLFPTLSASGKTKSKNPYDEKRLLEQNKRMQKENSAPEGFPNFIREGF 118
           KR  +  +L    L   LSA GKTKS  PYDE+RLL+QNK++Q+ N AP+ FPNFIREGF
Sbjct: 52  KRSALALVLAIPALSVPLSAHGKTKSMTPYDERRLLQQNKKIQEANRAPDDFPNFIREGF 111

Query: 119 EVKVVTSENYTKRDSGLIYRDFEVGKGDCPKDGQQV 154
           +VKVVT +NY  RDSGLIY D ++G GDCPKDGQQV
Sbjct: 112 QVKVVTPDNYVTRDSGLIYEDVKIGTGDCPKDGQQV 147

Source: Brachypodium distachyon

Species: Brachypodium distachyon

Genus: Brachypodium

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388505134|gb|AFK40633.1| unknown [Medicago truncatula]

 Score =  130 bits (326), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 61/104 (58%), Positives = 82/104 (78%), Gaps = 1/104 (0%)

Query: 47  LKDNG-FHCKVKLKRRVVPFLLFSSGLFPTLSASGKTKSKNPYDEKRLLEQNKRMQKENS 105
           ++DN   H +  L+R++   +L S+ +FPTLS+  KTK+ NPY+EKR+L+QN+ +QK+N+
Sbjct: 45  VQDNSILHPEKVLRRKLALSVLVSTCVFPTLSSHAKTKNMNPYNEKRVLQQNRNIQKQNN 104

Query: 106 APEGFPNFIREGFEVKVVTSENYTKRDSGLIYRDFEVGKGDCPK 149
           AP+ FPNFIREGFEVKVV  +NY  RDSGLIYRDFEVG+GD  K
Sbjct: 105 APDDFPNFIREGFEVKVVAPDNYITRDSGLIYRDFEVGEGDLSK 148

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	176
TAIR|locus:2103366	242	AT3G60370 "AT3G60370" [Arabido	0.625	0.454	0.635	4.1e-33
UNIPROTKB|Q7XHR0	258	P0477A12.35 "Peptidyl-prolyl c	0.545	0.372	0.635	2.7e-29
UNIPROTKB|A8HTG4	269	FKB20-2 "Peptidyl-prolyl cis-t	0.363	0.237	0.553	1e-13

TAIR|locus:2103366 AT3G60370 "AT3G60370" [Arabidopsis thaliana (taxid:3702)]

 Score = 361 (132.1 bits), Expect = 4.1e-33, P = 4.1e-33
 Identities = 75/118 (63%), Positives = 90/118 (76%)

Query:    39 VRCSSSHNLKDNGFHCKVKLKRRVVPFLLFSSG--LFPTLSASGKTKSKNPYDEKRLLEQ 96
             V CS S   KD    C   L RR + ++L +S   L P LS+S KTKSK+PYDE+RLLEQ
Sbjct:    30 VCCSLSEEPKDQ---C---LSRRSLVYVLVASPCLLLPALSSSAKTKSKSPYDERRLLEQ 83

Query:    97 NKRMQKENSAPEGFPNFIREGFEVKVVTSENYTKRDSGLIYRDFEVGKGDCPKDGQQV 154
             NKR+Q+EN+AP+ FPNF+REGFEVKV+ S+NY K DSGLIYRDF VG+GD PKDGQQV
Sbjct:    84 NKRIQRENNAPDEFPNFVREGFEVKVLASDNYIKADSGLIYRDFNVGQGDFPKDGQQV 141

GO:0003755 "peptidyl-prolyl cis-trans isomerase activity" evidence=ISS;IDA

GO:0005528 "FK506 binding" evidence=ISS;IBA

GO:0005576 "extracellular region" evidence=ISM

GO:0006457 "protein folding" evidence=IEA

GO:0016020 "membrane" evidence=IBA

GO:0018208 "peptidyl-proline modification" evidence=IBA

GO:0009543 "chloroplast thylakoid lumen" evidence=IDA

GO:0031977 "thylakoid lumen" evidence=IDA

GO:0009579 "thylakoid" evidence=IDA

GO:0009507 "chloroplast" evidence=IDA

GO:0010207 "photosystem II assembly" evidence=RCA;IMP

GO:0016491 "oxidoreductase activity" evidence=IDA

GO:0006364 "rRNA processing" evidence=RCA

GO:0009902 "chloroplast relocation" evidence=RCA

GO:0010027 "thylakoid membrane organization" evidence=RCA

GO:0019761 "glucosinolate biosynthetic process" evidence=RCA

GO:0035304 "regulation of protein dephosphorylation" evidence=RCA

GO:0042793 "transcription from plastid promoter" evidence=RCA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA

UNIPROTKB|Q7XHR0 P0477A12.35 "Peptidyl-prolyl cis-trans isomerase" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 325 (119.5 bits), Expect = 2.7e-29, P = 2.7e-29
 Identities = 61/96 (63%), Positives = 75/96 (78%)

Query:    59 KRRVVPFLLFSSGLFPTLSASGKTKSKNPYDEKRLLEQNKRMQKENSAPEGFPNFIREGF 118
             +R  +  LL S  +    SA GKTKS+NPYDE+RLL+QNK++Q+ N AP+ FPNFIREGF
Sbjct:    63 RRAALALLLASPAMSVAFSAHGKTKSRNPYDERRLLQQNKKIQEANRAPDDFPNFIREGF 122

Query:   119 EVKVVTSENYTKRDSGLIYRDFEVGKGDCPKDGQQV 154
             EVKVVTS+NY  RDSGL+Y D +VG G+ PKDGQQV
Sbjct:   123 EVKVVTSDNYITRDSGLLYEDIKVGTGNSPKDGQQV 158

GO:0000413 "protein peptidyl-prolyl isomerization" evidence=ISS

GO:0003755 "peptidyl-prolyl cis-trans isomerase activity" evidence=ISS

GO:0005528 "FK506 binding" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0018208 "peptidyl-proline modification" evidence=ISS

UNIPROTKB|A8HTG4 FKB20-2 "Peptidyl-prolyl cis-trans isomerase" [Chlamydomonas reinhardtii (taxid:3055)]

 Score = 178 (67.7 bits), Expect = 1.0e-13, P = 1.0e-13
 Identities = 36/65 (55%), Positives = 44/65 (67%)

Query:    90 EKRLLEQNKRMQKENSAPEGFPNFIREGFEVKVVTSENYTKRDSGLIYRDFEVGKGDCPK 149
             EK +L  N+R+Q +N  P  FP FIREGF+VKV+  E Y    SGLIY+DFE G G  P 
Sbjct:   106 EKLVLNLNRRIQTQNRVPVDFPGFIREGFDVKVL-GEGYQVAPSGLIYKDFEEGTGPLPV 164

Query:   150 DGQQV 154
             DGQ+V
Sbjct:   165 DGQEV 169


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.322   0.136   0.412    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      176       163   0.00084  107 3  11 22  0.48    31
                                                     30  0.44    34


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  3
  No. of states in DFA:  550 (59 KB)
  Total size of DFA:  142 KB (2089 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  19.79u 0.10s 19.89t   Elapsed:  00:00:01
  Total cpu time:  19.79u 0.10s 19.89t   Elapsed:  00:00:01
  Start:  Sat May 11 03:50:45 2013   End:  Sat May 11 03:50:46 2013

GO:0000413 "protein peptidyl-prolyl isomerization" evidence=ISS

GO:0003755 "peptidyl-prolyl cis-trans isomerase activity" evidence=ISS

GO:0005528 "FK506 binding" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0018208 "peptidyl-proline modification" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00019110001	RecName- Full=Peptidyl-prolyl cis-trans isomerase; EC=5.2.1.8; (212 aa)
		(Vitis vinifera)
Predicted Functional Partners:
	GSVIVG00018455001	RecName- Full=Peptidyl-prolyl cis-trans isomerase; EC=5.2.1.8; (188 aa)			•						0.495
	GSVIVG00020753001	SubName- Full=Chromosome chr14 scaffold_21, whole genome shotgun sequence; (448 aa)				•			•		0.476

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	176
COG0545	205	FkpA FKBP-type peptidyl-prolyl cis-trans isomerase	99.56
PRK11570	206	peptidyl-prolyl cis-trans isomerase; Provisional	99.31
PRK10902	269	FKBP-type peptidyl-prolyl cis-trans isomerase; Pro	99.16
KOG0544	108	consensus FKBP-type peptidyl-prolyl cis-trans isom	99.16
KOG0552	226	consensus FKBP-type peptidyl-prolyl cis-trans isom	99.04
TIGR03516	177	ppisom_GldI peptidyl-prolyl isomerase, gliding mot	98.93
KOG0549	188	consensus FKBP-type peptidyl-prolyl cis-trans isom	98.23
PF00254	94	FKBP_C: FKBP-type peptidyl-prolyl cis-trans isomer	97.67
KOG0543	397	consensus FKBP-type peptidyl-prolyl cis-trans isom	97.12
PF01346	124	FKBP_N: Domain amino terminal to FKBP-type peptidy	85.41

>COG0545 FkpA FKBP-type peptidyl-prolyl cis-trans isomerases 1 [Posttranslational modification, protein turnover, chaperones]

Probab=99.56  E-value=7.7e-15  Score=123.96  Aligned_cols=53  Identities=25%  Similarity=0.354  Sum_probs=48.0

Q ss_pred             eEeecCCcccCCCCceEEEeeeccCCCCCCCCeEEEEEEEEeCCCCceeeeccc
Q 030508          121 KVVTSENYTKRDSGLIYRDFEVGKGDCPKDGQQVFLLSSLEAISSCSCYDISIR  174 (176)
Q Consensus       121 kvv~~~g~~tt~SGL~YkDik~GtG~~P~~GqtVtVHYtG~L~~dG~vFDSS~~  174 (176)
                      +.-...+..+++|||+|+++++|+|+.|++|++|.|||+|+| +||++||||++
T Consensus        89 ~~~k~~~v~~~~sgl~y~~~~~G~G~~~~~~~~V~vhY~G~l-~~G~vFDsS~~  141 (205)
T COG0545          89 KNAKEKGVKTLPSGLQYKVLKAGDGAAPKKGDTVTVHYTGTL-IDGTVFDSSYD  141 (205)
T ss_pred             hhcccCCceECCCCcEEEEEeccCCCCCCCCCEEEEEEEEec-CCCCccccccc
Confidence            333347789999999999999999999999999999999998 89999999975

>PRK11570 peptidyl-prolyl cis-trans isomerase; Provisional

Probab=99.31  E-value=3.2e-12  Score=106.33  Aligned_cols=50  Identities=22%  Similarity=0.347  Sum_probs=47.1

Q ss_pred             ecCCcccCCCCceEEEeeeccCCCCCCCCeEEEEEEEEeCCCCceeeeccc
Q 030508          124 TSENYTKRDSGLIYRDFEVGKGDCPKDGQQVFLLSSLEAISSCSCYDISIR  174 (176)
Q Consensus       124 ~~~g~~tt~SGL~YkDik~GtG~~P~~GqtVtVHYtG~L~~dG~vFDSS~~  174 (176)
                      +.+++++|+|||+|++++.|+|+.|++|++|.|||+|++ .||++||||++
T Consensus        93 k~~gv~~t~sGl~y~vi~~G~G~~p~~~d~V~v~Y~g~l-~dG~vfdss~~  142 (206)
T PRK11570         93 KKEGVNSTESGLQFRVLTQGEGAIPARTDRVRVHYTGKL-IDGTVFDSSVA  142 (206)
T ss_pred             hcCCcEECCCCcEEEEEeCCCCCCCCCCCEEEEEEEEEE-CCCCEEEeccC
Confidence            447899999999999999999999999999999999999 79999999984

>PRK10902 FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional

Probab=99.16  E-value=1e-10  Score=101.26  Aligned_cols=58  Identities=21%  Similarity=0.326  Sum_probs=51.5

Q ss_pred             ccceeeEeecCCcccCCCCceEEEeeeccCCCCCCCCeEEEEEEEEeCCCCceeeeccc
Q 030508          116 EGFEVKVVTSENYTKRDSGLIYRDFEVGKGDCPKDGQQVFLLSSLEAISSCSCYDISIR  174 (176)
Q Consensus       116 eg~~vkvv~~~g~~tt~SGL~YkDik~GtG~~P~~GqtVtVHYtG~L~~dG~vFDSS~~  174 (176)
                      +.|--+.-..+|+++++|||+|+++++|+|+.|+.|++|.|||+|++ .||++||||+.
T Consensus       129 ~~fl~~~~k~~gv~~t~sGl~y~Vi~~G~G~~p~~gD~V~V~Y~g~l-~dG~vfdss~~  186 (269)
T PRK10902        129 KKYREKFAKEKGVKTTSTGLLYKVEKEGTGEAPKDSDTVVVNYKGTL-IDGKEFDNSYT  186 (269)
T ss_pred             HHHHHHhccCCCcEECCCccEEEEEeCCCCCCCCCCCEEEEEEEEEe-CCCCEeecccc
Confidence            34555555668899999999999999999999999999999999998 79999999974

>KOG0544 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=99.16  E-value=4.1e-11  Score=92.79  Aligned_cols=40  Identities=25%  Similarity=0.282  Sum_probs=36.7

Q ss_pred             CceEEEeeeccC-CCCCCCCeEEEEEEEEeCCCCceeeeccc
Q 030508          134 GLIYRDFEVGKG-DCPKDGQQVFLLSSLEAISSCSCYDISIR  174 (176)
Q Consensus       134 GL~YkDik~GtG-~~P~~GqtVtVHYtG~L~~dG~vFDSS~~  174 (176)
                      |...+.|..|+| ..|++||+|+|||||+| .||++||||++
T Consensus         2 Gv~~~~i~~Gdg~tfpK~Gqtvt~hYtg~L-~dG~kfDSs~d   42 (108)
T KOG0544|consen    2 GVEKQVISPGDGRTFPKKGQTVTVHYTGTL-QDGKKFDSSRD   42 (108)
T ss_pred             CceeEEeeCCCCcccCCCCCEEEEEEEeEe-cCCcEeecccc
Confidence            567788999999 67999999999999999 99999999976

>KOG0552 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=99.04  E-value=2.9e-10  Score=97.36  Aligned_cols=47  Identities=23%  Similarity=0.335  Sum_probs=43.3

Q ss_pred             cccCCCCceEEEeeeccCCCCCCCCeEEEEEEEEeCCCCceeeeccc
Q 030508          128 YTKRDSGLIYRDFEVGKGDCPKDGQQVFLLSSLEAISSCSCYDISIR  174 (176)
Q Consensus       128 ~~tt~SGL~YkDik~GtG~~P~~GqtVtVHYtG~L~~dG~vFDSS~~  174 (176)
                      ..++++||+|+|+++|+|+.|++|++|.|||+|+|.-+|++||+.+.
T Consensus       115 ~~tl~~Gl~y~D~~vG~G~~a~~G~rV~v~Y~Gkl~~~GkvFd~~~~  161 (226)
T KOG0552|consen  115 SRTLPGGLRYEDLRVGSGPSAKKGKRVSVRYIGKLKGNGKVFDSNFG  161 (226)
T ss_pred             ceecCCCcEEEEEEecCCCCCCCCCEEEEEEEEEecCCCeEeecccC
Confidence            36889999999999999999999999999999999449999999864

>TIGR03516 ppisom_GldI peptidyl-prolyl isomerase, gliding motility-associated

Probab=98.93  E-value=2.1e-09  Score=87.69  Aligned_cols=48  Identities=19%  Similarity=0.234  Sum_probs=43.6

Q ss_pred             CCcccCCCCceEEEeee--ccCCCCCCCCeEEEEEEEEeCCCCceeeeccc
Q 030508          126 ENYTKRDSGLIYRDFEV--GKGDCPKDGQQVFLLSSLEAISSCSCYDISIR  174 (176)
Q Consensus       126 ~g~~tt~SGL~YkDik~--GtG~~P~~GqtVtVHYtG~L~~dG~vFDSS~~  174 (176)
                      .+|.++++||+|+++++  |+|..|+.|++|++||+|++ .||++||||+.
T Consensus        62 ~~~~~t~sGl~Y~v~~~~~g~g~~p~~gd~V~v~Y~~~~-~dG~v~~ss~~  111 (177)
T TIGR03516        62 VKYETSQNGFWYYYNQKDTGEGTTPEFGDLVTFEYDIRA-LDGDVIYSEEE  111 (177)
T ss_pred             CCceECCCccEEEEEEecCCCCCcCCCCCEEEEEEEEEe-CCCCEEEeCCC
Confidence            34899999999999977  77888999999999999999 89999999974

Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldI is a FKBP-type peptidyl-prolyl cis-trans isomerase (pfam00254) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockout of this gene abolishes the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. This family is only found in Bacteroidetes containing the suite of genes proposed to confer the gliding motility phenotype.

>KOG0549 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=98.23  E-value=1.9e-06  Score=72.68  Aligned_cols=42  Identities=14%  Similarity=0.096  Sum_probs=34.1

Q ss_pred             CCCceEEEeee--ccCCCCCCCCeEEEEEEEEeCCCCceeeeccc
Q 030508          132 DSGLIYRDFEV--GKGDCPKDGQQVFLLSSLEAISSCSCYDISIR  174 (176)
Q Consensus       132 ~SGL~YkDik~--GtG~~P~~GqtVtVHYtG~L~~dG~vFDSS~~  174 (176)
                      .++|+++.++.  .-..++++||+|.+||+|.| +||++|||||.
T Consensus        67 ~~~l~I~v~~~p~~C~~kak~GD~l~~HY~g~l-eDGt~fdSS~~  110 (188)
T KOG0549|consen   67 DEELQIGVLKKPEECPEKAKKGDTLHVHYTGSL-EDGTKFDSSYS  110 (188)
T ss_pred             CCceeEEEEECCccccccccCCCEEEEEEEEEe-cCCCEEeeecc
Confidence            45677766654  24566899999999999987 99999999985

>PF00254 FKBP_C: FKBP-type peptidyl-prolyl cis-trans isomerase; InterPro: IPR001179 Synonym(s): Peptidylprolyl cis-trans isomerase FKBP-type peptidylprolyl isomerases (5

Probab=97.67  E-value=5.8e-05  Score=53.35  Aligned_cols=26  Identities=23%  Similarity=0.326  Sum_probs=24.1

Q ss_pred             CCCCCCeEEEEEEEEeCCCCceeeecc
Q 030508          147 CPKDGQQVFLLSSLEAISSCSCYDISI  173 (176)
Q Consensus       147 ~P~~GqtVtVHYtG~L~~dG~vFDSS~  173 (176)
                      +|+.|++|++||+|++ .||++||+|+
T Consensus         4 ~~~~gd~V~i~y~~~~-~~g~~~~~~~   29 (94)
T PF00254_consen    4 TPKEGDTVTIHYTGRL-EDGKVFDSSY   29 (94)
T ss_dssp             SBSTTSEEEEEEEEEE-TTSEEEEETT
T ss_pred             cCCCCCEEEEEEEEEE-CCCcEEEEee
Confidence            3999999999999999 6999999994

2.1.8 from EC) in vertebrates, are receptors for the two immunosuppressants, FK506 and rapamycin. The drugs inhibit T cell proliferation by arresting two distinct cytoplasmic signal transmission pathways. Peptidylprolyl isomerases accelerate protein folding by catalysing the cis-trans isomerisation of proline imidic peptide bonds in oligopeptides. These proteins are found in a variety of organisms.; GO: 0006457 protein folding; PDB: 1IX5_A 3JXV_A 3JYM_A 1T11_A 1PBK_A 1FD9_A 2VCD_A 3B7X_A 1Q6H_B 1Q6I_B ....

>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=97.12  E-value=0.0011  Score=61.48  Aligned_cols=61  Identities=28%  Similarity=0.397  Sum_probs=49.1

Q ss_pred             hhcCCCCCCcccccccceeeEeecCCcccCCCCceEEEeeeccC--CCCCCCCeEEEEEEEEeCCCCceeeec
Q 030508          102 KENSAPEGFPNFIREGFEVKVVTSENYTKRDSGLIYRDFEVGKG--DCPKDGQQVFLLSSLEAISSCSCYDIS  172 (176)
Q Consensus       102 ~~n~~P~dfp~fireg~~vkvv~~~g~~tt~SGL~YkDik~GtG--~~P~~GqtVtVHYtG~L~~dG~vFDSS  172 (176)
                      -+-+.|+.+|.+--.=|+|+-+        +-||+-++|++|.|  ..|.+|..|+|||.|++ .|| +||.+
T Consensus        61 g~~~~pp~ip~~a~l~fe~el~--------Dg~iiKriir~G~gd~~~P~~g~~V~v~~~G~~-~~~-~f~~~  123 (397)
T KOG0543|consen   61 GEAGSPPKIPSNATLLFEVELL--------DGGIIKRIIREGEGDYSRPNKGAVVKVHLEGEL-EDG-VFDQR  123 (397)
T ss_pred             cccCCCCCCCCCcceeeeeccc--------CCceEEeeeecCCCCCCCCCCCcEEEEEEEEEE-CCc-ceecc
Confidence            3446888888887777776665        45666678899999  77999999999999998 666 99876

>PF01346 FKBP_N: Domain amino terminal to FKBP-type peptidyl-prolyl isomerase; InterPro: IPR000774 Peptidyl-prolyl cis-trans isomerase (PPIase) catalyses the cis-trans isomerisation of proline imidic peptide bonds in oligopeptides [, ]

Probab=85.41  E-value=0.48  Score=35.40  Aligned_cols=17  Identities=29%  Similarity=0.479  Sum_probs=12.3

Q ss_pred             eecCCcccCCCCceEEE
Q 030508          123 VTSENYTKRDSGLIYRD  139 (176)
Q Consensus       123 v~~~g~~tt~SGL~YkD  139 (176)
                      -..+|+++|+|||+|++
T Consensus       108 ~k~~GV~~t~SGLqY~V  124 (124)
T PF01346_consen  108 AKKEGVKTTESGLQYKV  124 (124)
T ss_dssp             HTSTTEEE-TTS-EEEE
T ss_pred             cCCCCCEECCCCCeeeC
Confidence            34488999999999985

This alpha helical domain is found at the N terminus of proteins belonging to the FKBP-type peptidyl-prolyl cis-trans isomerase(IPR001179 from INTERPRO) family. Peptidyl-prolyl cis-trans isomerase has been shown to accelerate the refolding of several proteins in vitro [, , ]; the FKPB-type enzymes probably act in the folding of extracytoplasmic proteins.; GO: 0006457 protein folding; PDB: 1FD9_A 2VCD_A 3OE2_A 2UZ5_A 3B09_A 1Q6H_B 1Q6I_B 1Q6U_A.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	176
3uf8_A	209	Ubiquitin-like protein SMT3, peptidyl-prolyl CIS-	2e-04

>3uf8_A Ubiquitin-like protein SMT3, peptidyl-prolyl CIS- isomerase; ssgcid, seattle structural genomics center for in disease; HET: FK5; 1.50A {Burkholderia pseudomallei} PDB: 4ggq_C* 3vaw_A* 3uqa_A* 4g50_A* 4fn2_A* 3uqb_A* 1euv_B 3v60_A 3v61_A 3v62_A* Length = 209

 Score = 39.0 bits (91), Expect = 2e-04
 Identities = 15/75 (20%), Positives = 24/75 (32%), Gaps = 1/75 (1%)

Query: 81  KTKSKNPYDEKRLLEQNKRMQKENSAPEGFPNFIREG-FEVKVVTSENYTKRDSGLIYRD 139
             +     D  R L    R+Q + +  +             + +        +SGL Y D
Sbjct: 51  AKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQIGGSTVVTTESGLKYED 110

Query: 140 FEVGKGDCPKDGQQV 154
              G G   + GQ V
Sbjct: 111 LTEGSGAEARAGQTV 125

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	176
1jvw_A	167	Macrophage infectivity potentiator; chagas disease	99.3
1u79_A	129	FKBP-type peptidyl-prolyl CIS-trans isomerase 3; T	99.3
3oe2_A	219	Peptidyl-prolyl CIS-trans isomerase; FKBP, ppiase,	99.29
1fd9_A	213	Protein (macrophage infectivity potentiator prote;	99.27
1q6h_A	224	FKBP-type peptidyl-prolyl CIS-trans isomerase FKP;	99.21
2y78_A	133	Peptidyl-prolyl CIS-trans isomerase; MIP, ppiase,	99.21
1yat_A	113	FK506 binding protein; HET: FK5; 2.50A {Saccharomy	99.18
3kz7_A	119	FK506-binding protein 3; FKPB ppiase rapamycin, is	99.18
2lgo_A	130	FKBP; infectious disease, isomerase, giardiasis, s	99.14
4dip_A	125	Peptidyl-prolyl CIS-trans isomerase FKBP14; struct	99.13
3uf8_A	209	Ubiquitin-like protein SMT3, peptidyl-prolyl CIS-	99.12
2f4e_A	180	ATFKBP42; FKBP-like, alpha-beta, signaling protein	99.11
3o5q_A	128	Peptidyl-prolyl CIS-trans isomerase FKBP5; FK-506	99.05
1r9h_A	135	FKB-6, FK506 binding protein family; structural ge	99.04
2ppn_A	107	FK506-binding protein 1A; high resolution protein	99.04
3b7x_A	134	FK506-binding protein 6; isomerase, repeat, rotama	99.03
3o5e_A	144	Peptidyl-prolyl CIS-trans isomerase FKBP5; FK-506	99.02
2jwx_A	157	FKBP38NTD, FK506-binding protein 8 variant; apopto	99.02
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	98.98
2vn1_A	129	70 kDa peptidylprolyl isomerase; FKBP, FK506, TPR	98.98
2awg_A	118	38 kDa FK-506 binding protein; FKBP-type, ppiase,	98.95
2d9f_A	135	FK506-binding protein 8 variant; FKBP, rapamycin,	98.94
1q1c_A	280	FK506-binding protein 4; rotamase, TPR repeat, nuc	98.88
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	98.8
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	98.73
3jxv_A	356	70 kDa peptidyl-prolyl isomerase; FKBP- binding do	98.5
2lkn_A	165	AH receptor-interacting protein; FKBP-type domain,	98.48
1q1c_A	280	FK506-binding protein 4; rotamase, TPR repeat, nuc	98.28
3jxv_A	356	70 kDa peptidyl-prolyl isomerase; FKBP- binding do	98.05
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	98.0
1hxv_A	113	Trigger factor; FKBP fold, ppiase, chaperone; NMR	97.51
1w26_A	432	Trigger factor, TF; chaperone, protein folding, ri	94.88
1t11_A	392	Trigger factor, TF; helix-turn-helix, four-helix-b	94.65
2pbc_A	102	FK506-binding protein 2; endoplasmic reticulum, is	93.5
3gty_X	433	Trigger factor, TF; chaperone-client complex, cell	82.58

>1jvw_A Macrophage infectivity potentiator; chagas disease, X-RAY rotamase, isomeras; 1.70A {Trypanosoma cruzi} SCOP: d.26.1.1

Probab=99.30  E-value=1.9e-12  Score=102.74  Aligned_cols=48  Identities=19%  Similarity=0.258  Sum_probs=45.2

Q ss_pred             CCcccCCCCceEEEeeeccCCC-CCCCCeEEEEEEEEeCCCCceeeeccc
Q 030508          126 ENYTKRDSGLIYRDFEVGKGDC-PKDGQQVFLLSSLEAISSCSCYDISIR  174 (176)
Q Consensus       126 ~g~~tt~SGL~YkDik~GtG~~-P~~GqtVtVHYtG~L~~dG~vFDSS~~  174 (176)
                      +++++++|||+|+++++|+|+. |+.|+.|+|||+|++ .||++||||+.
T Consensus        30 ~~~~~~~sGl~~~vl~~G~G~~~~~~gd~V~v~Y~g~l-~dG~~fdss~~   78 (167)
T 1jvw_A           30 PDAVKLPSGLVFQRIARGSGKRAPAIDDKCEVHYTGRL-RDGTVFDSSRE   78 (167)
T ss_dssp             TTEEECTTSCEEEEEECCCCSBCCCTTCCEEEEEEEEC-TTSCEEEEHHH
T ss_pred             CCcEECCCCEEEEEEEcCCCCcCCCCCCEEEEEEEEEE-CCCCEEeeccc
Confidence            5689999999999999999999 999999999999998 79999999963

>1u79_A FKBP-type peptidyl-prolyl CIS-trans isomerase 3; TFKBP13, FK-506 binding protein; 1.85A {Arabidopsis thaliana} SCOP: d.26.1.1 PDB: 1y0o_A

Probab=99.30  E-value=2.7e-12  Score=96.11  Aligned_cols=47  Identities=23%  Similarity=0.229  Sum_probs=44.9

Q ss_pred             CCcccCCCCceEEEeeeccCCCCCCCCeEEEEEEEEeCCCCceeeecc
Q 030508          126 ENYTKRDSGLIYRDFEVGKGDCPKDGQQVFLLSSLEAISSCSCYDISI  173 (176)
Q Consensus       126 ~g~~tt~SGL~YkDik~GtG~~P~~GqtVtVHYtG~L~~dG~vFDSS~  173 (176)
                      .+++++++||+|+++++|+|..|++|+.|+|||+|++ .||++||+|+
T Consensus         5 ~~~~~~~~Gl~~~~l~~G~G~~~~~gd~V~v~Y~g~~-~dG~~fdss~   51 (129)
T 1u79_A            5 CEFSVSPSGLAFCDKVVGYGPEAVKGQLIKAHYVGKL-ENGKVFDSSY   51 (129)
T ss_dssp             CCCEECTTSCEEEEEECCSSCBCCTTCEEEEEEEEEC-TTSCEEEEHH
T ss_pred             CccEECCCCeEEEEEEcCCCCCCCCCCEEEEEEEEEE-CCCCEEEecC
Confidence            5689999999999999999999999999999999998 7999999996

>3oe2_A Peptidyl-prolyl CIS-trans isomerase; FKBP, ppiase, FK506; HET: TAR SRT; 1.60A {Pseudomonas syringae PV} SCOP: d.26.1.0

Probab=99.29  E-value=4.5e-12  Score=105.36  Aligned_cols=46  Identities=15%  Similarity=0.221  Sum_probs=44.4

Q ss_pred             CCcccCCCCceEEEeeeccCCCCCCCCeEEEEEEEEeCCCCceeeec
Q 030508          126 ENYTKRDSGLIYRDFEVGKGDCPKDGQQVFLLSSLEAISSCSCYDIS  172 (176)
Q Consensus       126 ~g~~tt~SGL~YkDik~GtG~~P~~GqtVtVHYtG~L~~dG~vFDSS  172 (176)
                      +++++++|||+|+++++|+|+.|.+|++|+|||+|++ .||++||||
T Consensus       110 ~gv~~~~sGl~y~vl~~G~G~~p~~gd~V~V~Y~g~l-~dG~vfDss  155 (219)
T 3oe2_A          110 PGVKELADGILMTELTPGTGPKPDANGRVEVRYVGRL-PDGKIFDQS  155 (219)
T ss_dssp             TTCEECGGGCEEEEEECCCSCCCCTTSEEEEEEEEEC-TTSCEEEEC
T ss_pred             CCcEECCCCeEEEEEecCCCccCCCCCEEEEEEEEEE-CCCCEeecc
Confidence            6799999999999999999999999999999999998 799999998

>1fd9_A Protein (macrophage infectivity potentiator prote; FKBP domain, long alpha helix, dimerisation VIA helical INTE isomerase; 2.41A {Legionella pneumophila} SCOP: d.26.1.1 PDB: 2uz5_A 2vcd_A*

Probab=99.27  E-value=3.8e-12  Score=104.74  Aligned_cols=49  Identities=18%  Similarity=0.224  Sum_probs=45.9

Q ss_pred             cCCcccCCCCceEEEeeeccCCCCCCCCeEEEEEEEEeCCCCceeeeccc
Q 030508          125 SENYTKRDSGLIYRDFEVGKGDCPKDGQQVFLLSSLEAISSCSCYDISIR  174 (176)
Q Consensus       125 ~~g~~tt~SGL~YkDik~GtG~~P~~GqtVtVHYtG~L~~dG~vFDSS~~  174 (176)
                      .+++++++|||+|+++++|+|+.|++|+.|+|||+|++ .||++||||+.
T Consensus        98 ~~~v~~~~sGl~y~vl~~G~G~~p~~gD~V~V~Y~g~l-~dG~vfdss~~  146 (213)
T 1fd9_A           98 KPGVVVLPSGLQYKVINSGNGVKPGKSDTVTVEYTGRL-IDGTVFDSTEK  146 (213)
T ss_dssp             STTEEECTTSCEEEEEECCCSCCCCTTCEEEEEEEEEE-TTSCEEEEHHH
T ss_pred             cCCcEECCCccEEEEEecCCCccCCCCCEEEEEEEEEE-CCCCEEeeccc
Confidence            36789999999999999999999999999999999998 79999999974

>1q6h_A FKBP-type peptidyl-prolyl CIS-trans isomerase FKP; chaperone, peptidyl-prolyl isomerase, heat shock protein, FK family; HET: MSE; 1.97A {Escherichia coli} SCOP: d.26.1.1 PDB: 1q6i_A* 1q6u_A

Probab=99.21  E-value=1.7e-11  Score=101.71  Aligned_cols=48  Identities=27%  Similarity=0.416  Sum_probs=45.2

Q ss_pred             CCcccCCCCceEEEeeeccCCCCCCCCeEEEEEEEEeCCCCceeeeccc
Q 030508          126 ENYTKRDSGLIYRDFEVGKGDCPKDGQQVFLLSSLEAISSCSCYDISIR  174 (176)
Q Consensus       126 ~g~~tt~SGL~YkDik~GtG~~P~~GqtVtVHYtG~L~~dG~vFDSS~~  174 (176)
                      +++.+++|||+|+++++|+|+.|+.|+.|+|||+|++ .||++||||+.
T Consensus       114 ~~v~~~~sGl~y~vl~~G~G~~p~~gD~V~V~Y~g~l-~dG~vfdss~~  161 (224)
T 1q6h_A          114 KGVKTSSTGLVYQVVEAGKGEAPKDSDTVVVNYKGTL-IDGKEFDNSYT  161 (224)
T ss_dssp             TTEEECTTSCEEEEEECCSSCCCCTTCEEEEEEEEEE-TTSCEEEEGGG
T ss_pred             CCeEECCCceEEEEEecccCccccCCCEEEEEEEEEe-CCCCEEeeccc
Confidence            5678899999999999999999999999999999998 79999999974

>2y78_A Peptidyl-prolyl CIS-trans isomerase; MIP, ppiase, virulence; HET: SO4 GOL; 0.91A {Burkholderia pseudomallei} PDB: 2ke0_A 2ko7_A* 2l2s_A* 4dz2_A* 4dz3_A*

Probab=99.21  E-value=2.2e-11  Score=92.46  Aligned_cols=48  Identities=25%  Similarity=0.286  Sum_probs=45.1

Q ss_pred             CCcccCCCCceEEEeeeccCCCCCCCCeEEEEEEEEeCCCCceeeeccc
Q 030508          126 ENYTKRDSGLIYRDFEVGKGDCPKDGQQVFLLSSLEAISSCSCYDISIR  174 (176)
Q Consensus       126 ~g~~tt~SGL~YkDik~GtG~~P~~GqtVtVHYtG~L~~dG~vFDSS~~  174 (176)
                      +++.++++||+|+++++|+|..|++|+.|+|||+|++ .||++||+|++
T Consensus        21 ~~~~~~~~gl~~~~l~~G~G~~~~~gd~V~v~Y~g~~-~dG~~fdss~~   68 (133)
T 2y78_A           21 MTVVTTESGLKYEDLTEGSGAEARAGQTVSVHYTGWL-TDGQKFDSSKD   68 (133)
T ss_dssp             TCCEECTTSCEEEEEECCSSCBCCTTSEEEEEEEEEE-TTSCEEEETTT
T ss_pred             CCcEECCCCEEEEEEEcCCCCCCCCCCEEEEEEEEEE-CCCCEEeccCc
Confidence            4589999999999999999999999999999999998 89999999973

>1yat_A FK506 binding protein; HET: FK5; 2.50A {Saccharomyces cerevisiae} SCOP: d.26.1.1

Probab=99.18  E-value=2.4e-11  Score=88.21  Aligned_cols=45  Identities=18%  Similarity=0.240  Sum_probs=42.0

Q ss_pred             ccCCCCceEEEeeeccCCC-CCCCCeEEEEEEEEeCCCCceeeeccc
Q 030508          129 TKRDSGLIYRDFEVGKGDC-PKDGQQVFLLSSLEAISSCSCYDISIR  174 (176)
Q Consensus       129 ~tt~SGL~YkDik~GtG~~-P~~GqtVtVHYtG~L~~dG~vFDSS~~  174 (176)
                      .++++||+|+++++|+|+. |++|+.|+|||+|++ .||++||+|+.
T Consensus         2 ~~~~~g~~~~~~~~G~g~~~~~~gd~V~v~y~~~~-~dG~~~d~s~~   47 (113)
T 1yat_A            2 EVIEGNVKIDRISPGDGATFPKTGDLVTIHYTGTL-ENGQKFDSSVD   47 (113)
T ss_dssp             EECGGGCEEEEEECCCSSCCCCTTCEEEEEEEEEE-TTSCEEEESTT
T ss_pred             CCCCCCeEEEEEECCCCcccCCCCCEEEEEEEEEE-CCCCEEEecCC
Confidence            3578999999999999999 999999999999998 89999999974

>3kz7_A FK506-binding protein 3; FKPB ppiase rapamycin, isomerase, nucleus, phosphoprotein, R isomerase-inhibitor complex; HET: RAP; 1.95A {Mus musculus} SCOP: d.26.1.1 PDB: 1pbk_A*

Probab=99.18  E-value=3e-11  Score=88.21  Aligned_cols=44  Identities=16%  Similarity=0.207  Sum_probs=40.5

Q ss_pred             cCCCCceEEEeeeccCC-CCCCCCeEEEEEEEEeCCCCceeeeccc
Q 030508          130 KRDSGLIYRDFEVGKGD-CPKDGQQVFLLSSLEAISSCSCYDISIR  174 (176)
Q Consensus       130 tt~SGL~YkDik~GtG~-~P~~GqtVtVHYtG~L~~dG~vFDSS~~  174 (176)
                      +.|+||+|+++++|+|. .|++|+.|+|||+|++ .||++||||+.
T Consensus         1 ~~p~g~~~~il~~G~g~~~p~~gd~V~v~Y~g~~-~dG~~fdss~~   45 (119)
T 3kz7_A            1 EGPPKYTKSILKKGDKTNFPKKGDVVHCWYTGTL-PDGTVFDTNIQ   45 (119)
T ss_dssp             CCSCSEEEEEEECCCSSCCCCTTCEEEEEEEEEC-TTSCEEEECCC
T ss_pred             CCCCccEEEEEEcCCCCCcCCCCCEEEEEEEEEE-CCCCEEEeccc
Confidence            35899999999999996 4999999999999998 89999999974

>2lgo_A FKBP; infectious disease, isomerase, giardiasis, ssgcid, structura genomics, seattle structural genomics center for infectious; NMR {Giardia lamblia}

Probab=99.14  E-value=3.1e-11  Score=91.18  Aligned_cols=50  Identities=14%  Similarity=0.129  Sum_probs=46.0

Q ss_pred             ecCCcccCCCCceEE--EeeeccCCC-CCCCCeEEEEEEEEeCCCCceeeeccc
Q 030508          124 TSENYTKRDSGLIYR--DFEVGKGDC-PKDGQQVFLLSSLEAISSCSCYDISIR  174 (176)
Q Consensus       124 ~~~g~~tt~SGL~Yk--Dik~GtG~~-P~~GqtVtVHYtG~L~~dG~vFDSS~~  174 (176)
                      ....+.+++|||+|+  ++++|+|+. |++|+.|+|||+|++ .||++||+|+.
T Consensus        13 ~~~~~~~~~~Gl~~~K~~l~~G~G~~~~~~gd~V~v~Y~g~~-~dG~~fdss~~   65 (130)
T 2lgo_A           13 EAQTQGPGSMSAQLEKKVLTPGDGVTKPQAGKKVTVHYDGRF-PDGKQFDSSRS   65 (130)
T ss_dssp             CCSSCSSSSSSCCCCEEEEECCCSSCCCCTTSEEEEEEEEEC-TTSCEEECTTT
T ss_pred             ccccceeCCCceEEEEEEEeccCCCccCCCCCEEEEEEEEEE-CCCCEEEccCc
Confidence            335689999999999  999999999 999999999999998 89999999975

>4dip_A Peptidyl-prolyl CIS-trans isomerase FKBP14; structural genomics, structural genomics consortium, SGC, PE prolyl CIS-trans isomerase; 1.82A {Homo sapiens}

Probab=99.13  E-value=6.7e-11  Score=87.43  Aligned_cols=48  Identities=6%  Similarity=-0.096  Sum_probs=44.0

Q ss_pred             CCcccCCCCceEEEeeecc--CCCCCCCCeEEEEEEEEeCCCCceeeecc
Q 030508          126 ENYTKRDSGLIYRDFEVGK--GDCPKDGQQVFLLSSLEAISSCSCYDISI  173 (176)
Q Consensus       126 ~g~~tt~SGL~YkDik~Gt--G~~P~~GqtVtVHYtG~L~~dG~vFDSS~  173 (176)
                      .+..++++||+|+++++|+  |..|++|+.|+|||+|+++.||++||||+
T Consensus         5 ~~~~~~~~gl~~~~l~~g~~~g~~~~~gd~V~v~Y~g~~~~dG~~fdss~   54 (125)
T 4dip_A            5 MGALIPEPEVKIEVLQKPFICHRKTKGGDLMLVHYEGYLEKDGSLFHSTH   54 (125)
T ss_dssp             CGGGCCCCCCEEEEEECCSCCSCCCCTTCEEEEEEEEEETTTCCEEEEHH
T ss_pred             CceEECCCCeEEEEEEcCCCCCCcCCCCCEEEEEEEEEECCCCcEEEEcc
Confidence            4578899999999999999  89999999999999999933999999997

>3uf8_A Ubiquitin-like protein SMT3, peptidyl-prolyl CIS- isomerase; ssgcid, seattle structural genomics center for in disease; HET: FK5; 1.50A {Burkholderia pseudomallei} PDB: 4ggq_C* 3vaw_A* 3uqa_A* 4g50_A* 4fn2_A* 3uqb_A* 4giv_A* 1euv_B 3v60_A 3v61_A 3v62_A*

Probab=99.12  E-value=7.8e-11  Score=95.88  Aligned_cols=46  Identities=26%  Similarity=0.310  Sum_probs=44.1

Q ss_pred             cccCCCCceEEEeeeccCCCCCCCCeEEEEEEEEeCCCCceeeeccc
Q 030508          128 YTKRDSGLIYRDFEVGKGDCPKDGQQVFLLSSLEAISSCSCYDISIR  174 (176)
Q Consensus       128 ~~tt~SGL~YkDik~GtG~~P~~GqtVtVHYtG~L~~dG~vFDSS~~  174 (176)
                      ++++++||+|+++++|+|..|+.|+.|+|||+|++ .||++||||++
T Consensus        99 ~~~~~sGl~~~vl~~G~G~~~~~gd~V~v~Y~g~l-~dG~~fdss~~  144 (209)
T 3uf8_A           99 VVTTESGLKYEDLTEGSGAEARAGQTVSVHYTGWL-TDGQKFDSSKD  144 (209)
T ss_dssp             CEECTTSCEEEEEECCCSCBCCTTCEEEEEEEEEE-TTSCEEEESGG
T ss_pred             ccCCCCceEEEEEEcCCCCcCCCCCEEEEEEEEEE-CCCCEEEEccc
Confidence            78899999999999999999999999999999999 89999999975

>2f4e_A ATFKBP42; FKBP-like, alpha-beta, signaling protein; 2.32A {Arabidopsis thaliana}

Probab=99.11  E-value=7.3e-11  Score=93.96  Aligned_cols=49  Identities=14%  Similarity=0.087  Sum_probs=44.5

Q ss_pred             CCcccCCCCceEEEeeeccCCCCCCCCeEEEEEEEEeCCCCceeeeccc
Q 030508          126 ENYTKRDSGLIYRDFEVGKGDCPKDGQQVFLLSSLEAISSCSCYDISIR  174 (176)
Q Consensus       126 ~g~~tt~SGL~YkDik~GtG~~P~~GqtVtVHYtG~L~~dG~vFDSS~~  174 (176)
                      +++.++++||+|+++++|+|..|+.|+.|+|||+|++..||++||||+.
T Consensus        42 ~~~~~~~~gl~~~vl~~G~G~~~~~Gd~V~v~Y~g~l~~dG~~fdss~~   90 (180)
T 2f4e_A           42 SEAEVLDEKVSKQIIKEGHGSKPSKYSTCFLHYRAWTKNSQHKFEDTWH   90 (180)
T ss_dssp             SCCEEEETTEEEEEEECCBSCCBCTTCEEEEEEEEEETTTCCEEEETTT
T ss_pred             CCcEECCCceEEEEEeCCCCCCCCCCCEEEEEEEEEECCCCcEEeccCc
Confidence            4578899999999999999999999999999999998336999999974

>3o5q_A Peptidyl-prolyl CIS-trans isomerase FKBP5; FK-506 binding domain, HSP90 cochaperone, immunophiline, PEP prolyl isomerase; 0.96A {Homo sapiens} PDB: 3o5m_A 3o5l_A 3o5o_A 3o5p_A 3o5r_A* 4drk_A* 4drm_A* 4drn_A* 4dro_A* 4drp_A* 4drq_A* 3o5j_A 3o5g_A 3o5i_A 3o5k_A

Probab=99.05  E-value=1.9e-10  Score=85.84  Aligned_cols=46  Identities=26%  Similarity=0.365  Sum_probs=41.7

Q ss_pred             cccCCCCceEEEeeeccCC-CCCCCCeEEEEEEEEeCCCCceeeeccc
Q 030508          128 YTKRDSGLIYRDFEVGKGD-CPKDGQQVFLLSSLEAISSCSCYDISIR  174 (176)
Q Consensus       128 ~~tt~SGL~YkDik~GtG~-~P~~GqtVtVHYtG~L~~dG~vFDSS~~  174 (176)
                      ..++++||+|+++++|+|. .|+.|+.|+|||+|++ .||++||||+.
T Consensus        14 ~~~~d~gv~~~i~~~G~G~~~p~~gd~V~v~Y~g~~-~dG~~fdss~~   60 (128)
T 3o5q_A           14 TSKKDRGVLKIVKRVGNGEETPMIGDKVYVHYKGKL-SNGKKFDSSHD   60 (128)
T ss_dssp             CSSCSSSEEEEEEECCSSSCCCCTTCEEEEEEEEEE-TTSCEEEEHHH
T ss_pred             cccCCCCEEEEEEECCCCCccCCCCCEEEEEEEEEE-CCCCEEEecCC
Confidence            3467899999999999998 6999999999999998 79999999963

>1r9h_A FKB-6, FK506 binding protein family; structural genomics, peptidylprolyl isomerase, PSI, protein structure initiative; 1.80A {Caenorhabditis elegans} SCOP: d.26.1.1

Probab=99.04  E-value=2.3e-10  Score=86.51  Aligned_cols=43  Identities=23%  Similarity=0.237  Sum_probs=40.4

Q ss_pred             cCCCCceEEEeeeccCC-CCCCCCeEEEEEEEEeCCCCceeeecc
Q 030508          130 KRDSGLIYRDFEVGKGD-CPKDGQQVFLLSSLEAISSCSCYDISI  173 (176)
Q Consensus       130 tt~SGL~YkDik~GtG~-~P~~GqtVtVHYtG~L~~dG~vFDSS~  173 (176)
                      ++++||+|+++++|+|. .|+.|+.|+|||+|++ .||++||||+
T Consensus        11 ~~~~gl~~~~l~~G~g~~~~~~gd~V~v~Y~g~~-~dG~~fdss~   54 (135)
T 1r9h_A           11 KKDGGVLKLIKKEGQGVVKPTTGTTVKVHYVGTL-ENGTKFDSSR   54 (135)
T ss_dssp             TCCSSEEEEEEECCBSSCCCCTTCEEEEEEEEEE-TTSCEEEEHH
T ss_pred             CCCCcEEEEEEEccCCCcCCCCCCEEEEEEEEEE-CCCCEEEecC
Confidence            47999999999999997 5999999999999998 8999999986

>2ppn_A FK506-binding protein 1A; high resolution protein structure, isomerase; 0.92A {Homo sapiens} SCOP: d.26.1.1 PDB: 1b6c_A 1a7x_A 1d7h_A 1d7i_A 1d7j_A* 1f40_A* 1fap_A* 1d6o_A* 1fkd_A* 1fkf_A* 1fkg_A* 1fkh_A* 1fki_A* 1fkj_A* 1fkr_A 1fks_A 1fkt_A 1j4h_A* 1j4i_A* 1j4r_A* ...

Probab=99.04  E-value=2e-10  Score=82.21  Aligned_cols=40  Identities=23%  Similarity=0.280  Sum_probs=37.8

Q ss_pred             CceEEEeeeccCCC-CCCCCeEEEEEEEEeCCCCceeeeccc
Q 030508          134 GLIYRDFEVGKGDC-PKDGQQVFLLSSLEAISSCSCYDISIR  174 (176)
Q Consensus       134 GL~YkDik~GtG~~-P~~GqtVtVHYtG~L~~dG~vFDSS~~  174 (176)
                      ||+|+++++|+|+. |+.|+.|+|||+|++ .||++||+|+.
T Consensus         1 Gl~~~~~~~G~g~~~~~~gd~V~v~y~~~~-~dG~~~d~s~~   41 (107)
T 2ppn_A            1 GVQVETISPGDGRTFPKRGQTCVVHYTGML-EDGKKFDSSRD   41 (107)
T ss_dssp             CEEEEEEECCCSSCCCCTTCEEEEEEEEEE-TTSCEEEEHHH
T ss_pred             CcEEEEEECcCCCcCCCCCCEEEEEEEEEE-CCCCEEEecCC
Confidence            79999999999998 999999999999998 79999999963

>3b7x_A FK506-binding protein 6; isomerase, repeat, rotamase, TPR repeat, williams-beuren syndrome, structural genomics consortium, SGC; 2.10A {Homo sapiens}

Probab=99.03  E-value=1.3e-10  Score=87.82  Aligned_cols=46  Identities=17%  Similarity=0.098  Sum_probs=41.3

Q ss_pred             cccCCCCceEEEeeeccCCCCCCCCeEEEEEEEEeCC-CCceeeeccc
Q 030508          128 YTKRDSGLIYRDFEVGKGDCPKDGQQVFLLSSLEAIS-SCSCYDISIR  174 (176)
Q Consensus       128 ~~tt~SGL~YkDik~GtG~~P~~GqtVtVHYtG~L~~-dG~vFDSS~~  174 (176)
                      .+++++||+|+++++|+|..+..|+.|+|||+|++ . ||++||+|+.
T Consensus        21 ~v~~~~gl~~~vl~~G~g~~~~~gd~V~v~Y~g~l-~~~G~~fdss~~   67 (134)
T 3b7x_A           21 DISGDRGVLKDVIREGAGDLVAPDASVLVKYSGYL-EHMDRPFDSNYF   67 (134)
T ss_dssp             ESSSSSSEEEEEEECCEEEECCTTCEEEEEEEEEC-TTCSSCSEEC--
T ss_pred             eeeCCCCEEEEEEEcCCCCCCCCCCEEEEEEEEEE-CCCCeEEEecCC
Confidence            46689999999999999999999999999999998 6 6999999973

>3o5e_A Peptidyl-prolyl CIS-trans isomerase FKBP5; FK-506 binding domain, HSP90 cochaperone, immunophiline, PEP prolyl isomerase; 1.60A {Homo sapiens} PDB: 3o5f_A

Probab=99.02  E-value=3.4e-10  Score=86.59  Aligned_cols=44  Identities=27%  Similarity=0.385  Sum_probs=40.8

Q ss_pred             cCCCCceEEEeeeccCC-CCCCCCeEEEEEEEEeCCCCceeeeccc
Q 030508          130 KRDSGLIYRDFEVGKGD-CPKDGQQVFLLSSLEAISSCSCYDISIR  174 (176)
Q Consensus       130 tt~SGL~YkDik~GtG~-~P~~GqtVtVHYtG~L~~dG~vFDSS~~  174 (176)
                      +.++||+|+++++|+|. .|..|+.|+|||+|++ .||++||+|+.
T Consensus        32 ~~d~gv~~~i~~~G~G~~~p~~gd~V~v~Y~g~~-~dG~~fdss~~   76 (144)
T 3o5e_A           32 KKDRGVLKIVKRVGNGEETPMIGDKVYVHYKGKL-SNGKKFDSSHD   76 (144)
T ss_dssp             SCSSSEEEEEEECCBSSCCCCTTCEEEEEEEEEC-TTSCEEEESGG
T ss_pred             cCCCeEEEEEEECCCCCccCCCCCEEEEEEEEEE-CCCCEEEeecc
Confidence            46899999999999998 6999999999999998 79999999974

>2jwx_A FKBP38NTD, FK506-binding protein 8 variant; apoptosis, beta barrel, central helix, with flexible N-terminal extension, isomerase; NMR {Homo sapiens}

Probab=99.02  E-value=4.1e-10  Score=88.66  Aligned_cols=44  Identities=16%  Similarity=0.100  Sum_probs=40.9

Q ss_pred             cccCCCCc-eEEEeeeccCC--CCCCCCeEEEEEEEEeCCCCceeeec
Q 030508          128 YTKRDSGL-IYRDFEVGKGD--CPKDGQQVFLLSSLEAISSCSCYDIS  172 (176)
Q Consensus       128 ~~tt~SGL-~YkDik~GtG~--~P~~GqtVtVHYtG~L~~dG~vFDSS  172 (176)
                      ..+++||+ +|+++++|+|+  .|++|+.|+|||+|++ .||++|||+
T Consensus        37 ~~~~~sG~v~~~vl~~G~G~~~~p~~gd~V~v~Y~g~l-~dG~~fds~   83 (157)
T 2jwx_A           37 LDILGNGLLRKKTLVPGPPGSSRPVKGQVVTVHLQTSL-ENGTRVQEE   83 (157)
T ss_dssp             EESSSSSSEEEEEEECCSTTSCCCCTTEEEEEEEEEEC-TTSCEEEEE
T ss_pred             ceECCCCCEEEEEEEccCCCccCCCCCCEEEEEEEEEE-CCCCEeecC
Confidence            44899998 79999999998  8999999999999998 899999985

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=98.98  E-value=3.6e-10  Score=93.23  Aligned_cols=49  Identities=14%  Similarity=0.087  Sum_probs=43.5

Q ss_pred             CCcccCCCCceEEEeeeccCCCCCCCCeEEEEEEEEeCCCCceeeeccc
Q 030508          126 ENYTKRDSGLIYRDFEVGKGDCPKDGQQVFLLSSLEAISSCSCYDISIR  174 (176)
Q Consensus       126 ~g~~tt~SGL~YkDik~GtG~~P~~GqtVtVHYtG~L~~dG~vFDSS~~  174 (176)
                      .++.++++||+|+++++|+|..|..|++|+|||+|++..+|++||||+.
T Consensus        42 ~~~~~~~~~~~~~~~~~g~g~~~~~gd~v~v~y~g~~~~~g~~fd~~~~   90 (338)
T 2if4_A           42 SEAEVLDEKVSKQIIKEGHGSKPSKYSTCFLHYRAWTKNSQHKFEDTWH   90 (338)
T ss_dssp             SCCEEEETTEEEEEEECCBSCCCCTTCEEEEEEEEEETTTCCCCEEHHH
T ss_pred             cCceeCCCCeEEEEEeCCCCCCCCCCCEEEEEEEEEEcCCCcEeecccC
Confidence            3467788999999999999999999999999999998435999999963

>2vn1_A 70 kDa peptidylprolyl isomerase; FKBP, FK506, TPR repeat; HET: FK5; 2.35A {Plasmodium falciparum} PDB: 2ofn_A 2ki3_A 3ihz_A* 3ni6_A 3pa7_A

Probab=98.98  E-value=5.6e-10  Score=83.07  Aligned_cols=49  Identities=20%  Similarity=0.262  Sum_probs=41.8

Q ss_pred             CCcccCCCCceEE-Eeee---ccCCCCCCCCeEEEEEEEEeCCCCceeeeccc
Q 030508          126 ENYTKRDSGLIYR-DFEV---GKGDCPKDGQQVFLLSSLEAISSCSCYDISIR  174 (176)
Q Consensus       126 ~g~~tt~SGL~Yk-Dik~---GtG~~P~~GqtVtVHYtG~L~~dG~vFDSS~~  174 (176)
                      ++..+++||++|+ +++.   |+|..|+.|+.|+|||+|+++.||++||+|+.
T Consensus         8 ~~~~~~~~g~~~~~il~~G~~g~g~~~~~gd~V~v~Y~g~~~~dG~~fd~s~~   60 (129)
T 2vn1_A            8 EKVELTADGGVIKTILKKGDEGEENIPKKGNEVTVHYVGKLESTGKVFDSSFD   60 (129)
T ss_dssp             EEEECSTTSSEEEEEEECCCCSGGGSCCTTCEEEEEEEEEETTTCCEEEEGGG
T ss_pred             CCcEECCCCCEEEEEEeCCCCCCCCcCCCCCEEEEEEEEEECCCCeEEEecCC
Confidence            4577889999885 6785   46799999999999999997569999999973

>2awg_A 38 kDa FK-506 binding protein; FKBP-type, ppiase, BCL-2 inhibitor, SHH signalling antagonist, structural genomics consortium, SGC; 1.60A {Homo sapiens} PDB: 2f2d_A 3ey6_A

Probab=98.95  E-value=9.9e-10  Score=80.60  Aligned_cols=44  Identities=16%  Similarity=0.100  Sum_probs=40.4

Q ss_pred             cccCCCC-ceEEEeeeccCC--CCCCCCeEEEEEEEEeCCCCceeeec
Q 030508          128 YTKRDSG-LIYRDFEVGKGD--CPKDGQQVFLLSSLEAISSCSCYDIS  172 (176)
Q Consensus       128 ~~tt~SG-L~YkDik~GtG~--~P~~GqtVtVHYtG~L~~dG~vFDSS  172 (176)
                      ..+++|| |+|+++++|+|+  .|+.|+.|+|||+|++ .||++||++
T Consensus         7 ~~~~~~g~~~~~vl~~G~G~~~~~~~gd~V~v~y~g~~-~dG~~~ds~   53 (118)
T 2awg_A            7 LDILGNGLLRKKTLVPGPPGSSRPVKGQVVTVHLQTSL-ENGTRVQEE   53 (118)
T ss_dssp             EESSSSSSEEEEEEECCCTTCCCCCTTSEEEEEEEEEC-TTSCEEEEE
T ss_pred             eEECCCCCEEEEEEEcCCCCCccCCCCCEEEEEEEEEE-CCCCEEECC
Confidence            5567889 999999999998  7999999999999998 899999985

>2d9f_A FK506-binding protein 8 variant; FKBP, rapamycin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.94  E-value=1.4e-09  Score=82.10  Aligned_cols=46  Identities=17%  Similarity=0.096  Sum_probs=41.6

Q ss_pred             CCcccCCCC-ceEEEeeeccCC--CCCCCCeEEEEEEEEeCCCCceeeec
Q 030508          126 ENYTKRDSG-LIYRDFEVGKGD--CPKDGQQVFLLSSLEAISSCSCYDIS  172 (176)
Q Consensus       126 ~g~~tt~SG-L~YkDik~GtG~--~P~~GqtVtVHYtG~L~~dG~vFDSS  172 (176)
                      +...+++|| |+|+++++|+|+  .|+.|+.|+|||+|++ .||++||++
T Consensus         9 ~~~~~~~~g~l~~~vl~~G~G~~~~~~~gd~V~v~Y~g~~-~dG~~fds~   57 (135)
T 2d9f_A            9 EWLDILGNGLLRKKTLVPGPPGSSRPVKGQVVTVHLQTSL-ENGTRVQEE   57 (135)
T ss_dssp             SCEESSSSSSSEEEEEECCCSSCCCCCTTSEEEEEEEEEE-SSSCEEEEE
T ss_pred             cCcEECCCCCEEEEEEEcCCCCCccCCCCCEEEEEEEEEE-CCCCEEecC
Confidence            346677889 999999999998  8999999999999998 899999984

>1q1c_A FK506-binding protein 4; rotamase, TPR repeat, nuclear protein, phosphorylation, isomerase; 1.90A {Homo sapiens} SCOP: d.26.1.1 d.26.1.1 PDB: 1n1a_A 1rot_A 1rou_A

Probab=98.88  E-value=2.4e-09  Score=90.18  Aligned_cols=44  Identities=25%  Similarity=0.287  Sum_probs=41.3

Q ss_pred             cCCCCceEEEeeeccCCC-CCCCCeEEEEEEEEeCCCCceeeeccc
Q 030508          130 KRDSGLIYRDFEVGKGDC-PKDGQQVFLLSSLEAISSCSCYDISIR  174 (176)
Q Consensus       130 tt~SGL~YkDik~GtG~~-P~~GqtVtVHYtG~L~~dG~vFDSS~~  174 (176)
                      ++++||+|+++++|+|.. |+.|+.|+|||+|++ .||++||||+.
T Consensus        48 ~~~~gl~~~vl~~G~G~~~~~~gd~V~v~Y~g~~-~dG~~fdss~~   92 (280)
T 1q1c_A           48 KQDEGVLKVIKREGTGTEMPMIGDRVFVHYTGWL-LDGTKFDSSLD   92 (280)
T ss_dssp             SCSSSEEEEEEECCSSSCCCCTTCEEEEEEEEEE-TTSCEEEESTT
T ss_pred             CCCCceEEEEEeCCCCCcCCCCCCEEEEEEEEEE-CCCCEEEeccc
Confidence            468999999999999998 999999999999998 89999999973

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=98.80  E-value=1.5e-09  Score=93.13  Aligned_cols=44  Identities=27%  Similarity=0.366  Sum_probs=22.7

Q ss_pred             cCCCCceEEEeeeccCCC-CCCCCeEEEEEEEEeCCCCceeeeccc
Q 030508          130 KRDSGLIYRDFEVGKGDC-PKDGQQVFLLSSLEAISSCSCYDISIR  174 (176)
Q Consensus       130 tt~SGL~YkDik~GtG~~-P~~GqtVtVHYtG~L~~dG~vFDSS~~  174 (176)
                      ++++||+|+++++|+|.. |+.|+.|+|||+|++ .||++||||+.
T Consensus        28 ~~~~g~~~~~~~~G~g~~~~~~gd~v~v~y~~~~-~~g~~~dss~~   72 (457)
T 1kt0_A           28 KKDRGVLKIVKRVGNGEETPMIGDKVYVHYKGKL-SNGKKFDSSHD   72 (457)
T ss_dssp             -----CEEEC--------CCCBTCEEEEEEEEEC------CBC---
T ss_pred             CCCCcEEEEEEECCCCCCCCCCCCEEEEEEEEEE-CCCCEEeccCC
Confidence            478999999999999998 999999999999998 89999999964

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=98.73  E-value=1.2e-08  Score=83.87  Aligned_cols=43  Identities=23%  Similarity=0.220  Sum_probs=39.0

Q ss_pred             cccCCCCceEEEeeeccCC-CCCCCCeEEEEEEEEeCCCCceeeec
Q 030508          128 YTKRDSGLIYRDFEVGKGD-CPKDGQQVFLLSSLEAISSCSCYDIS  172 (176)
Q Consensus       128 ~~tt~SGL~YkDik~GtG~-~P~~GqtVtVHYtG~L~~dG~vFDSS  172 (176)
                      -++.++||++++++.|+|. .|..|++|+|||+|++  +|++||+|
T Consensus        20 ~~~~~~~~~~~~~~~g~g~~~p~~~~~v~v~y~g~~--~g~~fd~~   63 (336)
T 1p5q_A           20 HMEEDGGIIRRIQTRGEGYAKPNEGAIVEVALEGYY--KDKLFDQR   63 (336)
T ss_dssp             --CCTTSEEEEEEECCCCSCCCCTTCEEEEEEEEEE--TTEEEEEE
T ss_pred             eecCCCcEEEEEEeCCCCCCCCCCCCeEEEEEEEEE--CCEEEecC
Confidence            5677999999999999998 6999999999999997  99999997

>3jxv_A 70 kDa peptidyl-prolyl isomerase; FKBP- binding domain five-stranded anti-parallel beta-sheet alpha-helix crossing THis sheet; 2.08A {Triticum aestivum} PDB: 3jym_A

Probab=98.50  E-value=1.7e-07  Score=80.29  Aligned_cols=55  Identities=11%  Similarity=0.183  Sum_probs=45.1

Q ss_pred             ceeeEeecCC--cccCCCCceEEEeeeccC-CCCCCCCeEEEEEEEEeCCCCceeeecc
Q 030508          118 FEVKVVTSEN--YTKRDSGLIYRDFEVGKG-DCPKDGQQVFLLSSLEAISSCSCYDISI  173 (176)
Q Consensus       118 ~~vkvv~~~g--~~tt~SGL~YkDik~GtG-~~P~~GqtVtVHYtG~L~~dG~vFDSS~  173 (176)
                      |+|+.+.-..  -++.++|++|+++++|+| ..|+.|+.|+|||+|++ .||++||+|.
T Consensus       227 ~~vel~~~~~v~dv~~d~~~~~~i~~~g~g~~~~~~gd~V~v~y~g~l-~dG~~fd~~~  284 (356)
T 3jxv_A          227 IDLELVSWKTVTEIGDDKKILKKVLKEXEGYERPNEGAVVTVKITGKL-QDGTVFLKKG  284 (356)
T ss_dssp             EEEEEEEEECEEEESTTCCEEEEEEECCBSSCCCCTTCEEEEEEEEEE-SSSCEEEEES
T ss_pred             EEEEEEEEecccccccccceeEEeeecccccCCCCCCCEEEEEEEEEE-CCCCEEeecc
Confidence            5555554221  244678999999999999 78999999999999999 8999999983

>2lkn_A AH receptor-interacting protein; FKBP-type domain, immunophilin homolog, protein binding; NMR {Homo sapiens}

Probab=98.48  E-value=8.5e-08  Score=76.64  Aligned_cols=29  Identities=14%  Similarity=-0.042  Sum_probs=24.2

Q ss_pred             CCCCCCCeEEEEEEEEeC-CCCceeeeccc
Q 030508          146 DCPKDGQQVFLLSSLEAI-SSCSCYDISIR  174 (176)
Q Consensus       146 ~~P~~GqtVtVHYtG~L~-~dG~vFDSS~~  174 (176)
                      +.+++|++|+|||+|||+ .||++||||++
T Consensus        25 p~~~~G~~V~vhY~g~l~d~~G~~FDsS~~   54 (165)
T 2lkn_A           25 PDFQDGTKATFHYRTLHSDDEGTVLDDSRA   54 (165)
T ss_dssp             CCCCTTCEEEEECEEECSSSSCCEEEESTT
T ss_pred             CCCCCCCEEEEEEEEEEeCCCccEEEeccc
Confidence            345789999999999984 25999999975

>1q1c_A FK506-binding protein 4; rotamase, TPR repeat, nuclear protein, phosphorylation, isomerase; 1.90A {Homo sapiens} SCOP: d.26.1.1 d.26.1.1 PDB: 1n1a_A 1rot_A 1rou_A

Probab=98.28  E-value=1.4e-06  Score=73.38  Aligned_cols=40  Identities=25%  Similarity=0.250  Sum_probs=37.2

Q ss_pred             CCCCceEEEeeeccCC-CCCCCCeEEEEEEEEeCCCCceeeec
Q 030508          131 RDSGLIYRDFEVGKGD-CPKDGQQVFLLSSLEAISSCSCYDIS  172 (176)
Q Consensus       131 t~SGL~YkDik~GtG~-~P~~GqtVtVHYtG~L~~dG~vFDSS  172 (176)
                      .++||+|+++++|+|. .|++|+.|+|||+|++  ||++||++
T Consensus       166 ~d~gl~~~il~~G~G~~~~~~gd~V~i~y~g~~--dG~~fd~~  206 (280)
T 1q1c_A          166 EDGGIIRRIQTRGEGYAKPNEGAIVEVALEGYY--KDKLFDQR  206 (280)
T ss_dssp             CSSSEEEEEEECCSCSCCCCTTCEEEEEEEEEE--TTEEEEEE
T ss_pred             cccceeEEeeecccccccccCCceEEEEEEEEe--CCEEEecC
Confidence            6789999999999999 5999999999999987  99999984

>3jxv_A 70 kDa peptidyl-prolyl isomerase; FKBP- binding domain five-stranded anti-parallel beta-sheet alpha-helix crossing THis sheet; 2.08A {Triticum aestivum} PDB: 3jym_A

Probab=98.05  E-value=4.8e-06  Score=71.32  Aligned_cols=44  Identities=20%  Similarity=0.320  Sum_probs=39.5

Q ss_pred             ccCCCCceEEEeeeccC-CCCCCCCeEEEEEEEEeCCCCceeeecc
Q 030508          129 TKRDSGLIYRDFEVGKG-DCPKDGQQVFLLSSLEAISSCSCYDISI  173 (176)
Q Consensus       129 ~tt~SGL~YkDik~GtG-~~P~~GqtVtVHYtG~L~~dG~vFDSS~  173 (176)
                      +..+.++..+.+++|.| ..|..|+.|+|||+|+| .||++||+|.
T Consensus       123 i~~D~~~~k~i~~~G~g~~~p~~g~~V~v~y~g~l-~dgt~~~~~~  167 (356)
T 3jxv_A          123 IAKDGGIFKKILKEGDKWENPKDPDEVFVKYEARL-EDGTVVSKSE  167 (356)
T ss_dssp             TTSSSSEEEEEEECCBSSCCCCTTCEEEEEEEEEE-TTSCEEEEEE
T ss_pred             cccCceeEEEEEecCcccCCCCCCCEEEEEEEEEE-CCCCEEeccC
Confidence            34578899999999999 56999999999999999 8999999984

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=98.00  E-value=9.8e-06  Score=69.53  Aligned_cols=40  Identities=25%  Similarity=0.379  Sum_probs=35.7

Q ss_pred             CCCCceEEEeeeccCC-CCCCCCeEEEEEEEEeCCCCceeeec
Q 030508          131 RDSGLIYRDFEVGKGD-CPKDGQQVFLLSSLEAISSCSCYDIS  172 (176)
Q Consensus       131 t~SGL~YkDik~GtG~-~P~~GqtVtVHYtG~L~~dG~vFDSS  172 (176)
                      .+.++..++++.|.|. .|..|++|+|||+||+  +|++||++
T Consensus       144 ~dg~~~k~i~~~g~~~~~p~~g~~V~v~y~g~~--~g~~f~~~  184 (457)
T 1kt0_A          144 EDGGIIRRTKRKGEGYSNPNEGATVEIHLEGRC--GGRMFDCR  184 (457)
T ss_dssp             SSSSEEEEEEECCBCSCCCCTTCEEEEEEEEEE--TTEEEEEE
T ss_pred             CCcceEEEEEecCCCCCCCCCCCEEEEEEEEEe--CCeEEecC
Confidence            4567899999999995 5999999999999998  99999985

>1hxv_A Trigger factor; FKBP fold, ppiase, chaperone; NMR {Mycoplasma genitalium} SCOP: d.26.1.1

Probab=97.51  E-value=4.8e-05  Score=56.33  Aligned_cols=27  Identities=4%  Similarity=-0.149  Sum_probs=23.5

Q ss_pred             CCCCCCCCeEEEEEEEEeCCCCceeeecc
Q 030508          145 GDCPKDGQQVFLLSSLEAISSCSCYDISI  173 (176)
Q Consensus       145 G~~P~~GqtVtVHYtG~L~~dG~vFDSS~  173 (176)
                      +..+++|+.|+|||+|++  ||++||||.
T Consensus        27 ~~~~~~gD~V~v~Y~g~~--dG~~fdss~   53 (113)
T 1hxv_A           27 DKKLANGDIAIIDFTGIV--DNKKLASAS   53 (113)
T ss_dssp             --CCCSSEEEEEEEEEEE--TTEECSTTC
T ss_pred             CCCCCCCCEEEEEEEEEE--CCEEcccCC
Confidence            557999999999999997  999999985

>1w26_A Trigger factor, TF; chaperone, protein folding, ribosome associated protein, nascent chain, cell division, isomerase; 2.7A {Escherichia coli} SCOP: a.223.1.1 d.241.2.1 d.26.1.1 PDB: 2vrh_A 1w2b_5

Probab=94.88  E-value=0.014  Score=51.84  Aligned_cols=28  Identities=7%  Similarity=-0.039  Sum_probs=24.7

Q ss_pred             cCCCCCCCCeEEEEEEEEeCCCCceeeecc
Q 030508          144 KGDCPKDGQQVFLLSSLEAISSCSCYDISI  173 (176)
Q Consensus       144 tG~~P~~GqtVtVHYtG~L~~dG~vFDSS~  173 (176)
                      .+..++.|+.|++||+|+.  ||+.||+|+
T Consensus       154 ~~~~~~~gD~V~i~y~g~~--dG~~fd~~~  181 (432)
T 1w26_A          154 KDGAVEAEDRVTIDFTGSV--DGEEFEGGK  181 (432)
T ss_dssp             CSSCCCTTCEEEECEEEES--SSCBCSSCC
T ss_pred             cCCCCCCCCEEEEEEEEee--CCeEccCCC
Confidence            4567999999999999984  999999986

>1t11_A Trigger factor, TF; helix-turn-helix, four-helix-bundle, ppiase, chaperone; 2.50A {Vibrio cholerae} SCOP: a.223.1.1 d.241.2.1 d.26.1.1 PDB: 1l1p_A

Probab=94.65  E-value=0.017  Score=50.62  Aligned_cols=27  Identities=7%  Similarity=0.043  Sum_probs=23.5

Q ss_pred             CCCCCCCCeEEEEEEEEeCCCCceeeecc
Q 030508          145 GDCPKDGQQVFLLSSLEAISSCSCYDISI  173 (176)
Q Consensus       145 G~~P~~GqtVtVHYtG~L~~dG~vFDSS~  173 (176)
                      +..++.|+.|++||+|+.  ||+.||+|.
T Consensus       158 ~~~~~~gD~V~i~y~g~~--dG~~fd~~~  184 (392)
T 1t11_A          158 DEAAENGKRVSIDFVGSI--DGVEFEGGK  184 (392)
T ss_dssp             SCCCCTTCEEEEEEEEES--SSSCCTTCE
T ss_pred             CCCCCCCCEEEEEEEEEE--CCEEccCCC
Confidence            345899999999999984  999999983

>2pbc_A FK506-binding protein 2; endoplasmic reticulum, isomerase, polymorphism, rotamase, structural genomics, structural genomics consortium, SGC; 1.80A {Homo sapiens}

Probab=93.50  E-value=0.053  Score=37.92  Aligned_cols=19  Identities=5%  Similarity=-0.059  Sum_probs=16.9

Q ss_pred             CCCCCCCCeEEEEEEEEeC
Q 030508          145 GDCPKDGQQVFLLSSLEAI  163 (176)
Q Consensus       145 G~~P~~GqtVtVHYtG~L~  163 (176)
                      |..|++|+.|+|||+|++.
T Consensus         3 g~~~~~gd~V~v~y~~~~~   21 (102)
T 2pbc_A            3 PIKSRKGDVLHMHYTGKLE   21 (102)
T ss_dssp             CCCCCTTCEEEEEEEEECT
T ss_pred             CCcCCCCCEEEEEEEEEEC
Confidence            6679999999999999863

>3gty_X Trigger factor, TF; chaperone-client complex, cell cycle, cell division, chapero isomerase, rotamase, ribonucleoprotein, binding; 3.40A {Thermotoga maritima} PDB: 3gu0_A

Probab=82.58  E-value=0.88  Score=40.30  Aligned_cols=24  Identities=13%  Similarity=-0.107  Sum_probs=21.2

Q ss_pred             CCCCCCeEEEEEEEEeCCCCceeeec
Q 030508          147 CPKDGQQVFLLSSLEAISSCSCYDIS  172 (176)
Q Consensus       147 ~P~~GqtVtVHYtG~L~~dG~vFDSS  172 (176)
                      .++.|+.|++||+|+  .||..||++
T Consensus       154 ~a~~gD~V~id~~~~--~dG~~~~~~  177 (433)
T 3gty_X          154 PAEAGDLVRVNMEVY--NEEGKKLTS  177 (433)
T ss_dssp             CCCTTSEEEEEEEEE--CTTSCEEEE
T ss_pred             ccCCCCEEEEEEEEE--ECCEECcCC
Confidence            478999999999997  499999975

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	176
d1u79a_	125	d.26.1.1 (A:) FKBP13 {Thale cress (Arabidopsis tha	0.003

>d1u79a_ d.26.1.1 (A:) FKBP13 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 125

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKBP13
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 34.1 bits (77), Expect = 0.003
 Identities = 9/44 (20%), Positives = 15/44 (34%)

Query: 128 YTKRDSGLIYRDFEVGKGDCPKDGQQVFLLSSLEAISSCSCYDI 171
           ++   SGL + D  VG G     GQ +      +  +       
Sbjct: 3   FSVSPSGLAFCDKVVGYGPEAVKGQLIKAHYVGKLENGKVFDSS 46

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	176
d1u79a_	125	FKBP13 {Thale cress (Arabidopsis thaliana) [TaxId:	99.54
d1q6ha_	210	Peptidyl-prolyl cis-trans isomerase FkpA {Escheric	99.48
d1fd9a_	204	Macrophage infectivity potentiator protein (MIP) {	99.45
d1jvwa_	160	Macrophage infectivity potentiator protein (MIP) {	99.38
d1q1ca1	120	FKBP52, N-terminal domains {Human (Homo sapiens) [	99.24
d1yata_	113	Calcineurin (FKBP12.6) {Baker's yeast (Saccharomyc	99.22
d1r9ha_	118	FKB-6, N-terminal domain {Caenorhabditis elegans [	99.17
d2ppna1	107	FK-506 binding protein (FKBP12), an immunophilin {	99.16
d1kt1a2	111	FKBP51, N-terminal domains {Monkey (Saimiri bolivi	99.16
d1pbka_	116	FKBP25 {Human (Homo sapiens) [TaxId: 9606]}	99.0
d1kt1a3	115	FKBP51, N-terminal domains {Monkey (Saimiri bolivi	98.88
d1q1ca2	117	FKBP52, N-terminal domains {Human (Homo sapiens) [	98.66
d1t11a3	113	Trigger factor PPIase domain {Vibrio cholerae [Tax	86.95
d1l1pa_	106	Trigger factor PPIase domain {Escherichia coli [Ta	86.27
d1hxva_	85	Trigger factor PPIase domain {Mycoplasma genitaliu	81.28

>d1u79a_ d.26.1.1 (A:) FKBP13 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKBP13
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.54  E-value=2.1e-15  Score=110.70  Aligned_cols=47  Identities=23%  Similarity=0.252  Sum_probs=44.7

Q ss_pred             CcccCCCCceEEEeeeccCCCCCCCCeEEEEEEEEeCCCCceeeeccc
Q 030508          127 NYTKRDSGLIYRDFEVGKGDCPKDGQQVFLLSSLEAISSCSCYDISIR  174 (176)
Q Consensus       127 g~~tt~SGL~YkDik~GtG~~P~~GqtVtVHYtG~L~~dG~vFDSS~~  174 (176)
                      +++++||||+|+++++|+|+.|+.|++|+|||+|++ .||++||||+.
T Consensus         2 ~~~~~psGl~y~~~~~G~G~~p~~gd~V~v~y~g~l-~~G~~fdss~~   48 (125)
T d1u79a_           2 EFSVSPSGLAFCDKVVGYGPEAVKGQLIKAHYVGKL-ENGKVFDSSYN   48 (125)
T ss_dssp             CCEECTTSCEEEEEECCSSCBCCTTCEEEEEEEEEC-TTSCEEEEHHH
T ss_pred             CcEECCCCCEEEEEEeccCCCCCCCCEEEEEEEeee-cCCcEEecccc
Confidence            489999999999999999999999999999999998 89999999964

>d1q6ha_ d.26.1.1 (A:) Peptidyl-prolyl cis-trans isomerase FkpA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Peptidyl-prolyl cis-trans isomerase FkpA
species: Escherichia coli [TaxId: 562]

Probab=99.48  E-value=2.9e-14  Score=113.69  Aligned_cols=48  Identities=27%  Similarity=0.416  Sum_probs=45.8

Q ss_pred             CCcccCCCCceEEEeeeccCCCCCCCCeEEEEEEEEeCCCCceeeeccc
Q 030508          126 ENYTKRDSGLIYRDFEVGKGDCPKDGQQVFLLSSLEAISSCSCYDISIR  174 (176)
Q Consensus       126 ~g~~tt~SGL~YkDik~GtG~~P~~GqtVtVHYtG~L~~dG~vFDSS~~  174 (176)
                      +++.+++|||+|+++++|+|+.|.+|++|+|||+||| +||++||||++
T Consensus       100 ~~v~~~~sGl~y~v~~~G~G~~p~~gd~v~v~y~g~l-~dG~~fd~s~~  147 (210)
T d1q6ha_         100 KGVKTSSTGLVYQVVEAGKGEAPKDSDTVVVNYKGTL-IDGKEFDNSYT  147 (210)
T ss_dssp             TTEEECTTSCEEEEEECCSSCCCCTTCEEEEEEEEEE-TTSCEEEEGGG
T ss_pred             CceEEccCceEEEEeeCCCCCCCCCCceEEEEEEEEE-cCCCEEeeccc
Confidence            6788999999999999999999999999999999999 79999999975

>d1fd9a_ d.26.1.1 (A:) Macrophage infectivity potentiator protein (MIP) {Legionella pneumophila [TaxId: 446]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Macrophage infectivity potentiator protein (MIP)
species: Legionella pneumophila [TaxId: 446]

Probab=99.45  E-value=4.5e-14  Score=111.88  Aligned_cols=49  Identities=18%  Similarity=0.224  Sum_probs=46.1

Q ss_pred             cCCcccCCCCceEEEeeeccCCCCCCCCeEEEEEEEEeCCCCceeeeccc
Q 030508          125 SENYTKRDSGLIYRDFEVGKGDCPKDGQQVFLLSSLEAISSCSCYDISIR  174 (176)
Q Consensus       125 ~~g~~tt~SGL~YkDik~GtG~~P~~GqtVtVHYtG~L~~dG~vFDSS~~  174 (176)
                      .+++++|+|||+|+++++|+|+.|.+|++|.|||+|+| .||++||||+.
T Consensus        90 ~~~v~~~~sGl~y~v~~~G~G~~p~~~d~v~v~y~g~l-~dg~~f~~s~~  138 (204)
T d1fd9a_          90 KPGVVVLPSGLQYKVINSGNGVKPGKSDTVTVEYTGRL-IDGTVFDSTEK  138 (204)
T ss_dssp             STTEEECTTSCEEEEEECCCSCCCCTTCEEEEEEEEEE-TTSCEEEEHHH
T ss_pred             CCceEEecCccEEEEeecCCCcccCCCCEEEEEEEEEE-CCCCEeccccc
Confidence            36789999999999999999999999999999999999 89999999964

>d1jvwa_ d.26.1.1 (A:) Macrophage infectivity potentiator protein (MIP) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Macrophage infectivity potentiator protein (MIP)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=99.38  E-value=2.6e-13  Score=104.70  Aligned_cols=48  Identities=19%  Similarity=0.258  Sum_probs=44.4

Q ss_pred             CCcccCCCCceEEEeeeccCCC-CCCCCeEEEEEEEEeCCCCceeeeccc
Q 030508          126 ENYTKRDSGLIYRDFEVGKGDC-PKDGQQVFLLSSLEAISSCSCYDISIR  174 (176)
Q Consensus       126 ~g~~tt~SGL~YkDik~GtG~~-P~~GqtVtVHYtG~L~~dG~vFDSS~~  174 (176)
                      +++++++|||+|+++++|+|+. |+.|++|+|||+||+ .||++|||++.
T Consensus        27 ~~~~~~~sGl~y~il~~G~G~~~P~~gd~V~v~Y~g~l-~dG~~fds~~~   75 (160)
T d1jvwa_          27 PDAVKLPSGLVFQRIARGSGKRAPAIDDKCEVHYTGRL-RDGTVFDSSRE   75 (160)
T ss_dssp             TTEEECTTSCEEEEEECCCCSBCCCTTCCEEEEEEEEC-TTSCEEEEHHH
T ss_pred             CCCEECCCCCEEEEEECcccccCCCCCcceEEEEEEEE-ccCCeeeeecc
Confidence            5689999999999999999974 899999999999998 89999999854

>d1q1ca1 d.26.1.1 (A:21-140) FKBP52, N-terminal domains {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKBP52, N-terminal domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.24  E-value=4.3e-12  Score=93.49  Aligned_cols=44  Identities=25%  Similarity=0.287  Sum_probs=40.1

Q ss_pred             cCCCCceEEEeeeccCCC-CCCCCeEEEEEEEEeCCCCceeeeccc
Q 030508          130 KRDSGLIYRDFEVGKGDC-PKDGQQVFLLSSLEAISSCSCYDISIR  174 (176)
Q Consensus       130 tt~SGL~YkDik~GtG~~-P~~GqtVtVHYtG~L~~dG~vFDSS~~  174 (176)
                      +.++||.|+++++|+|.. |..|++|+|||+|++ .||++||||++
T Consensus         8 ~~d~gv~~~i~~~G~G~~~P~~gd~V~v~y~~~l-~dG~~fdss~~   52 (120)
T d1q1ca1           8 KQDEGVLKVIKREGTGTEMPMIGDRVFVHYTGWL-LDGTKFDSSLD   52 (120)
T ss_dssp             SCSSSEEEEEEECCSSSCCCCTTCEEEEEEEEEE-TTSCEEEESTT
T ss_pred             CCCCCEEEEEEEcccCCcCCCCCCEEEEEEEEEE-cCCCEEEeccc
Confidence            346899999999999965 899999999999999 89999999975

>d1yata_ d.26.1.1 (A:) Calcineurin (FKBP12.6) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Calcineurin (FKBP12.6)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.22  E-value=5.9e-12  Score=90.95  Aligned_cols=44  Identities=18%  Similarity=0.246  Sum_probs=40.9

Q ss_pred             cCCCCceEEEeeeccCCC-CCCCCeEEEEEEEEeCCCCceeeeccc
Q 030508          130 KRDSGLIYRDFEVGKGDC-PKDGQQVFLLSSLEAISSCSCYDISIR  174 (176)
Q Consensus       130 tt~SGL~YkDik~GtG~~-P~~GqtVtVHYtG~L~~dG~vFDSS~~  174 (176)
                      .+++||+|++++.|+|.. |+.||+|+|||+|++ .||++||+++.
T Consensus         3 ~~d~gl~~~~l~~G~G~~~P~~gd~V~v~y~~~~-~dG~~~ds~~~   47 (113)
T d1yata_           3 VIEGNVKIDRISPGDGATFPKTGDLVTIHYTGTL-ENGQKFDSSVD   47 (113)
T ss_dssp             ECGGGCEEEEEECCCSSCCCCTTCEEEEEEEEEE-TTSCEEEESTT
T ss_pred             CccCCcEEEEEECccCCcCCCCCCEEEEEEEEEE-ecCcEEecccc
Confidence            468999999999999986 999999999999998 89999999975

>d1r9ha_ d.26.1.1 (A:) FKB-6, N-terminal domain {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKB-6, N-terminal domain
species: Caenorhabditis elegans [TaxId: 6239]

Probab=99.17  E-value=1.3e-11  Score=90.51  Aligned_cols=44  Identities=23%  Similarity=0.230  Sum_probs=40.2

Q ss_pred             cCCCCceEEEeeeccCC-CCCCCCeEEEEEEEEeCCCCceeeeccc
Q 030508          130 KRDSGLIYRDFEVGKGD-CPKDGQQVFLLSSLEAISSCSCYDISIR  174 (176)
Q Consensus       130 tt~SGL~YkDik~GtG~-~P~~GqtVtVHYtG~L~~dG~vFDSS~~  174 (176)
                      +.++||+|+++++|+|. .|..|++|+|||+|++ .||++||||+.
T Consensus         7 ~~d~Gl~~~il~~G~G~~~p~~gd~V~v~y~~~l-~dG~v~dss~~   51 (118)
T d1r9ha_           7 KKDGGVLKLIKKEGQGVVKPTTGTTVKVHYVGTL-ENGTKFDSSRD   51 (118)
T ss_dssp             TCCSSEEEEEEECCBSSCCCCTTCEEEEEEEEEE-TTSCEEEEHHH
T ss_pred             cCCCCEEEEEEECcCCCCCCCCCCEEEEEEEEEE-cCCCEEEEccc
Confidence            46789999999999996 5999999999999998 89999999864

>d2ppna1 d.26.1.1 (A:1-107) FK-506 binding protein (FKBP12), an immunophilin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FK-506 binding protein (FKBP12), an immunophilin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.16  E-value=1.3e-11  Score=88.59  Aligned_cols=40  Identities=23%  Similarity=0.280  Sum_probs=37.6

Q ss_pred             CceEEEeeeccCCC-CCCCCeEEEEEEEEeCCCCceeeeccc
Q 030508          134 GLIYRDFEVGKGDC-PKDGQQVFLLSSLEAISSCSCYDISIR  174 (176)
Q Consensus       134 GL~YkDik~GtG~~-P~~GqtVtVHYtG~L~~dG~vFDSS~~  174 (176)
                      ||+|+++++|+|+. |+.|++|+|||+|++ .||++||||++
T Consensus         1 Gv~~~~l~~G~G~~~p~~gd~V~v~y~g~l-~dG~~~d~s~~   41 (107)
T d2ppna1           1 GVQVETISPGDGRTFPKRGQTCVVHYTGML-EDGKKFDSSRD   41 (107)
T ss_dssp             CEEEEEEECCCSSCCCCTTCEEEEEEEEEE-TTSCEEEEHHH
T ss_pred             CcEEEEEECcCCccCCCCCCEEEEEEEEEe-cCCeEEEeeec
Confidence            89999999999986 899999999999998 89999999964

>d1kt1a2 d.26.1.1 (A:28-138) FKBP51, N-terminal domains {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKBP51, N-terminal domains
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=99.16  E-value=4.2e-12  Score=91.89  Aligned_cols=44  Identities=25%  Similarity=0.381  Sum_probs=28.4

Q ss_pred             cCCCCceEEEeeeccCC-CCCCCCeEEEEEEEEeCCCCceeeeccc
Q 030508          130 KRDSGLIYRDFEVGKGD-CPKDGQQVFLLSSLEAISSCSCYDISIR  174 (176)
Q Consensus       130 tt~SGL~YkDik~GtG~-~P~~GqtVtVHYtG~L~~dG~vFDSS~~  174 (176)
                      ++++||.|+++++|+|. .|..|++|+|||+|++ .||++||||++
T Consensus         1 k~d~Gi~~~i~~~G~g~~~P~~gd~V~v~y~~~l-~dG~~~dss~~   45 (111)
T d1kt1a2           1 KKDRGVLKIVKRVGHGEETPMIGDRVYVHYNGKL-ANGKKFDSSHD   45 (111)
T ss_dssp             CCSCSCEEEC----CCSCCCCTTCEEEEECCCCS-CC---------
T ss_pred             CCCCCeEEEEEEcccCCcCCCCCCEEEEEEEEEE-CCCCEEEEEEe
Confidence            46899999999999997 4999999999999998 89999999975

>d1pbka_ d.26.1.1 (A:) FKBP25 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKBP25
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.00  E-value=2.2e-10  Score=82.85  Aligned_cols=40  Identities=18%  Similarity=0.234  Sum_probs=35.8

Q ss_pred             CceEEEeeeccCC-CCCCCCeEEEEEEEEeCCCCceeeeccc
Q 030508          134 GLIYRDFEVGKGD-CPKDGQQVFLLSSLEAISSCSCYDISIR  174 (176)
Q Consensus       134 GL~YkDik~GtG~-~P~~GqtVtVHYtG~L~~dG~vFDSS~~  174 (176)
                      .+..+++++|+|. .|++||+|+|||+||| .||++||||++
T Consensus         2 ~~~k~vl~~G~G~~~P~~gd~V~v~y~~~l-~dG~~fdss~~   42 (116)
T d1pbka_           2 KYTKSVLKKGDKTNFPKKGDVVHCWYTGTL-QDGTVFDTNIQ   42 (116)
T ss_dssp             CEEEEEEECCCSSCCCCTTCEEEEEEEEEC-TTSCEEEECCC
T ss_pred             cceEEEEecCCCCCCCCCCCEEEEEEEEEE-CCCCEeecccc
Confidence            3567899999996 5999999999999998 89999999965

>d1kt1a3 d.26.1.1 (A:139-253) FKBP51, N-terminal domains {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKBP51, N-terminal domains
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=98.88  E-value=1.2e-09  Score=77.80  Aligned_cols=43  Identities=23%  Similarity=0.349  Sum_probs=38.9

Q ss_pred             ccCCCCceEEEeeeccC-CCCCCCCeEEEEEEEEeCCCCceeeecc
Q 030508          129 TKRDSGLIYRDFEVGKG-DCPKDGQQVFLLSSLEAISSCSCYDISI  173 (176)
Q Consensus       129 ~tt~SGL~YkDik~GtG-~~P~~GqtVtVHYtG~L~~dG~vFDSS~  173 (176)
                      ++.++||.|+++++|+| +.|+.|++|+|||+|++  +|++||++.
T Consensus         4 ~~~D~gi~k~il~~G~G~~~p~~gd~V~v~y~g~~--~g~~~~~~~   47 (115)
T d1kt1a3           4 LLEDGGIIRRTKRRGEGYSNPNEGARVQIHLEGRC--GGRVFDCRD   47 (115)
T ss_dssp             TTSSSSEEEEEEECCCCSSCCCTTCEEEEEEEEEE--TTEEEEEEE
T ss_pred             cccCCCEEEEEEEeecCCCCCCCCCEEEEEEEEEe--CCccccccc
Confidence            46789999999999999 57999999999999987  999999873

>d1q1ca2 d.26.1.1 (A:141-257) FKBP52, N-terminal domains {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKBP52, N-terminal domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.66  E-value=1.6e-08  Score=72.25  Aligned_cols=41  Identities=24%  Similarity=0.249  Sum_probs=34.8

Q ss_pred             CCCCceEEEeeeccC-CCCCCCCeEEEEEEEEeCCCCceeeecc
Q 030508          131 RDSGLIYRDFEVGKG-DCPKDGQQVFLLSSLEAISSCSCYDISI  173 (176)
Q Consensus       131 t~SGL~YkDik~GtG-~~P~~GqtVtVHYtG~L~~dG~vFDSS~  173 (176)
                      .++||.|+++++|+| ..|..|++|+|||+||+ .|| .||.|.
T Consensus         6 ~D~gi~~~il~~G~G~~~p~~gd~V~v~y~g~~-~~~-~~~~~~   47 (117)
T d1q1ca2           6 EDGGIIRRIQTRGEGYAKPNEGAIVEVALEGYY-KDK-LFDQRE   47 (117)
T ss_dssp             CSSSEEEEEEECCSCSCCCCTTCEEEEEEEEEE-TTE-EEEEEE
T ss_pred             CCCCEEEEEEeeecCCCCCCCCCEEEEEEEEEe-CCC-cEeecc
Confidence            458999999999999 46999999999999998 555 577653

>d1t11a3 d.26.1.1 (A:135-247) Trigger factor PPIase domain {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Trigger factor PPIase domain
species: Vibrio cholerae [TaxId: 666]

Probab=86.95  E-value=0.19  Score=34.99  Aligned_cols=24  Identities=8%  Similarity=0.039  Sum_probs=20.6

Q ss_pred             CCCCCCeEEEEEEEEeCCCCceeeec
Q 030508          147 CPKDGQQVFLLSSLEAISSCSCYDIS  172 (176)
Q Consensus       147 ~P~~GqtVtVHYtG~L~~dG~vFDSS  172 (176)
                      .++.|+.|+|+|+|+.  ||+.|+..
T Consensus        23 ~a~~gD~v~id~~~~~--dG~~~~~~   46 (113)
T d1t11a3          23 AAENGKRVSIDFVGSI--DGVEFEGG   46 (113)
T ss_dssp             CCCTTCEEEEEEEEES--SSSCCTTC
T ss_pred             cccCCCEEEEEEEEEE--CCEEccCC
Confidence            3789999999999976  99988764

>d1l1pa_ d.26.1.1 (A:) Trigger factor PPIase domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Trigger factor PPIase domain
species: Escherichia coli [TaxId: 562]

Probab=86.27  E-value=0.12  Score=35.87  Aligned_cols=25  Identities=4%  Similarity=-0.060  Sum_probs=20.7

Q ss_pred             CCCCCCCeEEEEEEEEeCCCCceeeec
Q 030508          146 DCPKDGQQVFLLSSLEAISSCSCYDIS  172 (176)
Q Consensus       146 ~~P~~GqtVtVHYtG~L~~dG~vFDSS  172 (176)
                      ..++.||.|+|+|+|+.  ||+.|+.+
T Consensus        13 r~a~~GD~v~id~~~~~--dG~~~~~~   37 (106)
T d1l1pa_          13 GAVEAEDRVTIDFTGSV--DGEEFEGG   37 (106)
T ss_dssp             SSCCTTEEEEEEEECCS--SSSCCSTT
T ss_pred             ccccCCCEEEEEEEEEE--CCEECCCC
Confidence            34688999999999964  99998754

>d1hxva_ d.26.1.1 (A:) Trigger factor PPIase domain {Mycoplasma genitalium [TaxId: 2097]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Trigger factor PPIase domain
species: Mycoplasma genitalium [TaxId: 2097]

Probab=81.28  E-value=0.44  Score=31.34  Aligned_cols=16  Identities=6%  Similarity=-0.124  Sum_probs=14.0

Q ss_pred             CCCCCCeEEEEEEEEe
Q 030508          147 CPKDGQQVFLLSSLEA  162 (176)
Q Consensus       147 ~P~~GqtVtVHYtG~L  162 (176)
                      ++..||.|+|+|+|++
T Consensus         1 k~a~GD~V~idy~g~~   16 (85)
T d1hxva_           1 KLANGDIAIIDFTGIV   16 (85)
T ss_dssp             CCCSSEEEEEEEEEEE
T ss_pred             CCCCCCEEEEEEEEEE
Confidence            3678999999999986