Citrus Sinensis ID: 030512

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170------
Protein Sequence
MAAAAFSLTLSSPVSKPHTFCTSYYSKPINASFSASLPCKRSPRTALKIVRAVSISSPDLRTGPDDLVASILSKVNQSDGGVSLAKEEHKEVAEVAQELQKYCVEAPVKCPLIFGEWDVVYCSVPTSPGGGYRSAFGRLFFKTKEMIQAVEAPDTVRNKVSFTALGFLDGEVSLKA
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccccccccccccccccEEEEEcccccccccccHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHccccccccccccEEEEEEEEEccccccccccccccccccEEcccEEEEccccccEEEEEEEEEcccccEEEEEcc
Secondary Structure Prediction (SSPRO)
cHHHHHHccccccccccccccccccccccccccccccccccccccccEEEEEEEccccccccccHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHcccccccccccEEEcEEEEEEEcccccccccccHHHHHEEccHHHHHEEccccEEEEEEEEEEEEccccEEEEcc
Coil and Loop (DISEMBL)
MAAAAFSltlsspvskphtfctsyyskpinasfsaslpckrsprTALKIVRAVsisspdlrtgpdDLVASILSKVnqsdggvslAKEEHKEVAEVAQELQKYCVeapvkcplifgewdvvycsvptspgggyrsafgRLFFKTKEMIqaveapdtvrnkvsftalgfldgevslka
Flexible Loop (DISEMBL)
MAAAAFSltlsspvskpHTFCTSYYSKPINASFSASLPCKRSPRTALKIVRavsisspdlrtgPDDLVASILSKVNQSDGGVSLAKEEHKEVAEVAQELQKYCVEAPVKCPLIFGEWDVVYCSVPTSPGGGYRSAFGRLFFKTKEMIQAveapdtvrnkVSFTalgfldgevslka
Low Complexity Region (SEG)
MAAAAFSLTLSSPVSKPHTFCTSYYSKPINASFSASLPCKRSPRTALKIVRAVSISSPDLRTGPDDLVASILSKVNQSDGGVSLakeehkevaevaqeLQKYCVEAPVKCPLIFGEWDVVYCSVPTSPGGGYRSAFGRLFFKTKEMIQAVEAPDTVRNKVSFTALGFLDGEVSLKA
Disordered region (IsUnstruct)
*****************HTFCTSYYSKPINASFSASLPC*****TALKIVRAVS**************************************AEVAQELQKYCVEAPVKCPLIFGEWDVVYCSVPTSPGGGYRSAFGRLFFKTKEMIQAVEAPDTVRNKVSFTALGFLD*******
Disordered Region (DISOPRED)
******************************************************************LVASILSKVNQSDG**********EVAEVAQELQKYCVEAPVKCPLIFGEWDVVYCS*************GRLFFKTKEMIQAVEAPDTVRNKVSFTALGFLDGEVSLK*
Disordered Region (DISEMBL)
MAAAAFSLTLSSPVSKPHTFCTSYYSKPINASFSASLPCKRSPRTALKIVRAVSISSPDLRTGPDDLVASILSKVNQSDGGVSLAKEEHKEVAEVAQELQKYCVEAPVKCPLIFGEWDVVYCSVPTSPGGGYRSAFGRLFFKTKEMIQAVEAPDTVRNKVSFTALGFLDGEVSLKA
Disordered Region (DISPRO)
*******************************************RTALKIVRAVSISSPDLRTGPDDLVASILSKVNQSDGGVSLAKEEHKEVAEVAQELQKYCVEAPVKCPLIFGEWDVVYCSVPTSPGGGYRSAFGRLFFKTKEMIQAVEAPDTVRNKVSFTALGFLDGEVSLKA
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MAAAAFSLTLSSPVSKPHTFCTSYYSKPINASFSASLPCKRSPRTALKIVRAVSISSPDLRTGPDDLVASILSKVNQSDGGVSLAKEEHKEVAEVAQELQKYCVEAPVKCPLIFGEWDVVYCSVPTSPGGGYRSAFGRLFFKTKEMIQAVEAPDTVRNKVSFTALGFLDGEVSLKA
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	176	2.2.26 [Sep-21-2011]
Q941D3	239	Probable plastid-lipid-as	yes	no	0.971	0.715	0.629	3e-56

>sp|Q941D3|PAP8_ARATH Probable plastid-lipid-associated protein 8, chloroplastic OS=Arabidopsis thaliana GN=PAP8 PE=2 SV=1

 Score =  217 bits (553), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 112/178 (62%), Positives = 136/178 (76%), Gaps = 7/178 (3%)

Query: 1   MAAAAFSLTLSSPVSKPHTFCTSYYSKPINASFSASLPCK----RSPRTALKIVRAVSIS 56
           MAA A SLT++S  S+P T   S  S+ +N     S+P K    RS R  L +V +VS  
Sbjct: 1   MAATASSLTIASSFSEPRTQIHS--SRRLNLPLQYSIPYKVLRSRSRRLGL-VVSSVSAP 57

Query: 57  SPDLRTGPDDLVASILSKVNQSDGGVSLAKEEHKEVAEVAQELQKYCVEAPVKCPLIFGE 116
           + +LRTGPDDL++++LSKV  SDGGV+L+ E+HKEVA+VA ELQKYCV+ PVK PLIFG+
Sbjct: 58  NVELRTGPDDLISTLLSKVANSDGGVTLSPEQHKEVAQVAGELQKYCVKEPVKNPLIFGD 117

Query: 117 WDVVYCSVPTSPGGGYRSAFGRLFFKTKEMIQAVEAPDTVRNKVSFTALGFLDGEVSL 174
           W+VVYCS PTSPGGGYRS  GRLFFKTKEMIQA++APD VRNKVS  A GFLDG+VSL
Sbjct: 118 WEVVYCSRPTSPGGGYRSVIGRLFFKTKEMIQAIDAPDIVRNKVSINAFGFLDGDVSL 175

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	176
388517989	234	unknown [Medicago truncatula]	0.954	0.717	0.657	4e-58
255574115	304	structural molecule, putative [Ricinus c	0.852	0.493	0.722	5e-57
225429807	238	PREDICTED: probable plastid-lipid-associ	0.965	0.714	0.64	9e-57
449441978	248	PREDICTED: probable plastid-lipid-associ	0.846	0.600	0.711	1e-55
238481317	235	putative plastid-lipid-associated protei	0.971	0.727	0.629	1e-54
15241221	239	putative plastid-lipid-associated protei	0.971	0.715	0.629	1e-54
297808055	240	hypothetical protein ARALYDRAFT_910032 [	0.971	0.712	0.625	1e-54
356563803	231	PREDICTED: probable plastid-lipid-associ	0.778	0.593	0.731	2e-52
255626135	231	unknown [Glycine max]	0.778	0.593	0.724	8e-52
349892287	208	plastid lipid-associated protein, partia	0.784	0.663	0.680	1e-49

>gi|388517989|gb|AFK47056.1| unknown [Medicago truncatula]

 Score =  229 bits (584), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 115/175 (65%), Positives = 138/175 (78%), Gaps = 7/175 (4%)

Query: 2   AAAAFSLTLSSPVSKPHTFCTSYYSKPINASFSASLPCKRSPRTALKIVRAVSISSPDLR 61
           +A+AF L  SS   + H    +  + P + SF+   P +++   +L +  +VSIS+ D+R
Sbjct: 6   SASAFRLVPSSFEIRSH----NNNNFPTSKSFNIRFPRRKN---SLCVSASVSISNTDVR 58

Query: 62  TGPDDLVASILSKVNQSDGGVSLAKEEHKEVAEVAQELQKYCVEAPVKCPLIFGEWDVVY 121
           TGP+DLVAS+LSKV Q+DGGV L KEEHKEVAEV QELQKYCV+ PVKCPLIFGEWDVVY
Sbjct: 59  TGPNDLVASLLSKVVQTDGGVLLQKEEHKEVAEVVQELQKYCVKEPVKCPLIFGEWDVVY 118

Query: 122 CSVPTSPGGGYRSAFGRLFFKTKEMIQAVEAPDTVRNKVSFTALGFLDGEVSLKA 176
           CS PTSPGGGYRSA GR+FFKTKEM+Q VEAPD VRNK++FTALGFLDGEVSLK 
Sbjct: 119 CSQPTSPGGGYRSALGRVFFKTKEMVQVVEAPDVVRNKIAFTALGFLDGEVSLKG 173

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255574115|ref|XP_002527973.1| structural molecule, putative [Ricinus communis] gi|223532599|gb|EEF34385.1| structural molecule, putative [Ricinus communis]

 Score =  225 bits (574), Expect = 5e-57,   Method: Compositional matrix adjust.
 Identities = 112/155 (72%), Positives = 130/155 (83%), Gaps = 5/155 (3%)

Query: 27  KPINASFSASLPCKR----SPRTALKIVRAVSISSPDLRTG-PDDLVASILSKVNQSDGG 81
           KP+  +  A LP +R    S + + +I+ +VSISS ++RTG PDDLVASI+SKV Q+DGG
Sbjct: 88  KPVILASHAPLPARRYYYCSQKKSPRILCSVSISSSEVRTGRPDDLVASIISKVTQTDGG 147

Query: 82  VSLAKEEHKEVAEVAQELQKYCVEAPVKCPLIFGEWDVVYCSVPTSPGGGYRSAFGRLFF 141
           V+L KEEH+EV+EVAQ+LQ YCV  PVKCPLIFGEWDVVYCS PTSPGGGYRSAFGRLFF
Sbjct: 148 VTLTKEEHEEVSEVAQQLQSYCVAEPVKCPLIFGEWDVVYCSRPTSPGGGYRSAFGRLFF 207

Query: 142 KTKEMIQAVEAPDTVRNKVSFTALGFLDGEVSLKA 176
           KTKEMIQAVEAPDTVRNKVSF+  GFL+GEVSLK 
Sbjct: 208 KTKEMIQAVEAPDTVRNKVSFSLFGFLNGEVSLKG 242

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225429807|ref|XP_002282879.1| PREDICTED: probable plastid-lipid-associated protein 8, chloroplastic [Vitis vinifera] gi|296081777|emb|CBI20782.3| unnamed protein product [Vitis vinifera]

 Score =  224 bits (571), Expect = 9e-57,   Method: Compositional matrix adjust.
 Identities = 112/175 (64%), Positives = 129/175 (73%), Gaps = 5/175 (2%)

Query: 2   AAAAFSLTLSSPVSKPHTFCTSYYSKPINASFSASLPCKRSPRTALKIVRAVSISSPDLR 61
           +A  FS   +   SKP T          N+    S+P  R      ++  ++S++SP++R
Sbjct: 4   SAVLFSSVRACEFSKPQTLIPRS-----NSPLIVSIPLHRRRHKNGRVFASISVTSPEVR 58

Query: 62  TGPDDLVASILSKVNQSDGGVSLAKEEHKEVAEVAQELQKYCVEAPVKCPLIFGEWDVVY 121
           TGPDDLVASILSKV Q+D GV L K++HKEVAEVAQELQKYCV  PVKCPLIFGEWDVVY
Sbjct: 59  TGPDDLVASILSKVAQTDRGVLLTKDKHKEVAEVAQELQKYCVTEPVKCPLIFGEWDVVY 118

Query: 122 CSVPTSPGGGYRSAFGRLFFKTKEMIQAVEAPDTVRNKVSFTALGFLDGEVSLKA 176
           CS PTSPGGGYR+AFGRLFFK KEMIQ VEAPD VRNKV F+ALGFLD EVSLK 
Sbjct: 119 CSNPTSPGGGYRNAFGRLFFKAKEMIQVVEAPDIVRNKVHFSALGFLDVEVSLKG 173

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449441978|ref|XP_004138759.1| PREDICTED: probable plastid-lipid-associated protein 8, chloroplastic-like [Cucumis sativus] gi|449499565|ref|XP_004160851.1| PREDICTED: probable plastid-lipid-associated protein 8, chloroplastic-like [Cucumis sativus]

 Score =  221 bits (562), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 111/156 (71%), Positives = 126/156 (80%), Gaps = 7/156 (4%)

Query: 26  SKPINASFSASLPCKR----SP---RTALKIVRAVSISSPDLRTGPDDLVASILSKVNQS 78
           SK +  + ++S PC      SP   R    I  +VSIS P +RTGPDDLVASILSKV  S
Sbjct: 29  SKFLTPTSTSSFPCHSISISSPFHRRKPFGIQASVSISDPQVRTGPDDLVASILSKVTGS 88

Query: 79  DGGVSLAKEEHKEVAEVAQELQKYCVEAPVKCPLIFGEWDVVYCSVPTSPGGGYRSAFGR 138
           D GV L++E+HKEVAEVA+ELQKYCV  PVKCPLIFG WDVVYCSVPTSPGGGYRSA GR
Sbjct: 89  DRGVLLSEEQHKEVAEVAEELQKYCVNEPVKCPLIFGAWDVVYCSVPTSPGGGYRSAVGR 148

Query: 139 LFFKTKEMIQAVEAPDTVRNKVSFTALGFLDGEVSL 174
           +FFKTKEMIQAVEAPDT++NKVSF+ALGFLDG+VSL
Sbjct: 149 IFFKTKEMIQAVEAPDTIKNKVSFSALGFLDGQVSL 184

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|238481317|ref|NP_001154722.1| putative plastid-lipid-associated protein 8 [Arabidopsis thaliana] gi|332005387|gb|AED92770.1| putative plastid-lipid-associated protein 8 [Arabidopsis thaliana]

 Score =  217 bits (553), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 112/178 (62%), Positives = 136/178 (76%), Gaps = 7/178 (3%)

Query: 1   MAAAAFSLTLSSPVSKPHTFCTSYYSKPINASFSASLPCK----RSPRTALKIVRAVSIS 56
           MAA A SLT++S  S+P T   S  S+ +N     S+P K    RS R  L +V +VS  
Sbjct: 1   MAATASSLTIASSFSEPRTQIHS--SRRLNLPLQYSIPYKVLRSRSRRLGL-VVSSVSAP 57

Query: 57  SPDLRTGPDDLVASILSKVNQSDGGVSLAKEEHKEVAEVAQELQKYCVEAPVKCPLIFGE 116
           + +LRTGPDDL++++LSKV  SDGGV+L+ E+HKEVA+VA ELQKYCV+ PVK PLIFG+
Sbjct: 58  NVELRTGPDDLISTLLSKVANSDGGVTLSPEQHKEVAQVAGELQKYCVKEPVKNPLIFGD 117

Query: 117 WDVVYCSVPTSPGGGYRSAFGRLFFKTKEMIQAVEAPDTVRNKVSFTALGFLDGEVSL 174
           W+VVYCS PTSPGGGYRS  GRLFFKTKEMIQA++APD VRNKVS  A GFLDG+VSL
Sbjct: 118 WEVVYCSRPTSPGGGYRSVIGRLFFKTKEMIQAIDAPDIVRNKVSINAFGFLDGDVSL 175

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15241221|ref|NP_197494.1| putative plastid-lipid-associated protein 8 [Arabidopsis thaliana] gi|75163992|sp|Q941D3.1|PAP8_ARATH RecName: Full=Probable plastid-lipid-associated protein 8, chloroplastic; AltName: Full=Fibrillin-8; Flags: Precursor gi|15529232|gb|AAK97710.1| AT5g19940/F28I16_90 [Arabidopsis thaliana] gi|16974385|gb|AAL31118.1| AT5g19940/F28I16_90 [Arabidopsis thaliana] gi|21592750|gb|AAM64699.1| unknown [Arabidopsis thaliana] gi|332005386|gb|AED92769.1| putative plastid-lipid-associated protein 8 [Arabidopsis thaliana]

 Score =  217 bits (553), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 112/178 (62%), Positives = 136/178 (76%), Gaps = 7/178 (3%)

Query: 1   MAAAAFSLTLSSPVSKPHTFCTSYYSKPINASFSASLPCK----RSPRTALKIVRAVSIS 56
           MAA A SLT++S  S+P T   S  S+ +N     S+P K    RS R  L +V +VS  
Sbjct: 1   MAATASSLTIASSFSEPRTQIHS--SRRLNLPLQYSIPYKVLRSRSRRLGL-VVSSVSAP 57

Query: 57  SPDLRTGPDDLVASILSKVNQSDGGVSLAKEEHKEVAEVAQELQKYCVEAPVKCPLIFGE 116
           + +LRTGPDDL++++LSKV  SDGGV+L+ E+HKEVA+VA ELQKYCV+ PVK PLIFG+
Sbjct: 58  NVELRTGPDDLISTLLSKVANSDGGVTLSPEQHKEVAQVAGELQKYCVKEPVKNPLIFGD 117

Query: 117 WDVVYCSVPTSPGGGYRSAFGRLFFKTKEMIQAVEAPDTVRNKVSFTALGFLDGEVSL 174
           W+VVYCS PTSPGGGYRS  GRLFFKTKEMIQA++APD VRNKVS  A GFLDG+VSL
Sbjct: 118 WEVVYCSRPTSPGGGYRSVIGRLFFKTKEMIQAIDAPDIVRNKVSINAFGFLDGDVSL 175

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297808055|ref|XP_002871911.1| hypothetical protein ARALYDRAFT_910032 [Arabidopsis lyrata subsp. lyrata] gi|297317748|gb|EFH48170.1| hypothetical protein ARALYDRAFT_910032 [Arabidopsis lyrata subsp. lyrata]

 Score =  217 bits (552), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 112/179 (62%), Positives = 137/179 (76%), Gaps = 8/179 (4%)

Query: 1   MAAAAFSLTLSSPVSKPHTFCTSYYSKPINASFSASLPCK-----RSPRTALKIVRAVSI 55
           MAAAA SLT++S +S+P T   S  SK  N     S+P K     R+ R  L +V +VS 
Sbjct: 1   MAAAASSLTIASSLSEPRTQIHS--SKRSNLPLQYSIPYKAVTRSRTRRLGL-VVSSVSA 57

Query: 56  SSPDLRTGPDDLVASILSKVNQSDGGVSLAKEEHKEVAEVAQELQKYCVEAPVKCPLIFG 115
            + +LRTGPDDL++++LSKV  SDGGV+L+ E+HKEVA+VA ELQKYCV+ PVK PLIFG
Sbjct: 58  PNVELRTGPDDLISTLLSKVANSDGGVTLSPEQHKEVAQVAGELQKYCVKEPVKNPLIFG 117

Query: 116 EWDVVYCSVPTSPGGGYRSAFGRLFFKTKEMIQAVEAPDTVRNKVSFTALGFLDGEVSL 174
           +W+VVYCS PTSPGGGYRS  GRLFFKTKEM+QA++APD VRNKVS  A GFLDG+VSL
Sbjct: 118 DWEVVYCSRPTSPGGGYRSVIGRLFFKTKEMVQAIDAPDIVRNKVSINAFGFLDGDVSL 176

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356563803|ref|XP_003550148.1| PREDICTED: probable plastid-lipid-associated protein 8, chloroplastic-like [Glycine max]

 Score =  210 bits (535), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 101/138 (73%), Positives = 115/138 (83%), Gaps = 1/138 (0%)

Query: 40  KRSPRTALKIVRA-VSISSPDLRTGPDDLVASILSKVNQSDGGVSLAKEEHKEVAEVAQE 98
            R   +A ++V A VS+S+P+++TGPDDLVASILSKV Q+DGGV L +EEHKEVAEVAQE
Sbjct: 37  NRRYNSAFRVVAASVSVSNPNVQTGPDDLVASILSKVVQTDGGVLLKEEEHKEVAEVAQE 96

Query: 99  LQKYCVEAPVKCPLIFGEWDVVYCSVPTSPGGGYRSAFGRLFFKTKEMIQAVEAPDTVRN 158
           LQKYCV  PVKCPLIFGEWDV YCS PTSPGGGYRSA GRLFF TK+M+Q VEAPD VRN
Sbjct: 97  LQKYCVSEPVKCPLIFGEWDVAYCSRPTSPGGGYRSAIGRLFFNTKQMVQVVEAPDIVRN 156

Query: 159 KVSFTALGFLDGEVSLKA 176
           KVS + L FLD EVSL+ 
Sbjct: 157 KVSLSVLSFLDVEVSLQG 174

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255626135|gb|ACU13412.1| unknown [Glycine max]

 Score =  208 bits (529), Expect = 8e-52,   Method: Compositional matrix adjust.
 Identities = 100/138 (72%), Positives = 114/138 (82%), Gaps = 1/138 (0%)

Query: 40  KRSPRTALKIVRA-VSISSPDLRTGPDDLVASILSKVNQSDGGVSLAKEEHKEVAEVAQE 98
            R   +A ++V A VS+S+P+++TGPDDLVASILSKV Q+DGGV L +EEHKEVAEVAQE
Sbjct: 37  NRRYNSAFRVVAASVSVSNPNVQTGPDDLVASILSKVVQTDGGVLLKEEEHKEVAEVAQE 96

Query: 99  LQKYCVEAPVKCPLIFGEWDVVYCSVPTSPGGGYRSAFGRLFFKTKEMIQAVEAPDTVRN 158
           LQKYCV  PVKCPLIFGEWDV YCS PTSPGGGYRSA GRLFF TK+M+Q VEAPD VRN
Sbjct: 97  LQKYCVSEPVKCPLIFGEWDVAYCSRPTSPGGGYRSAIGRLFFNTKQMVQVVEAPDIVRN 156

Query: 159 KVSFTALGFLDGEVSLKA 176
           KV  + L FLD EVSL+ 
Sbjct: 157 KVPLSVLSFLDVEVSLQG 174

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|349892287|gb|AEQ20879.1| plastid lipid-associated protein, partial [Eriobotrya japonica]

 Score =  201 bits (510), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 96/141 (68%), Positives = 113/141 (80%), Gaps = 3/141 (2%)

Query: 34  SASLPCKRSPRTALKIVRAVSISSPDLRTGPDDLVASILSKVNQSDGGVSLAKEEHKEVA 93
           S S  C+R+    L+I+ +VS+S P +RTGP++L ASILSKV  SD GV L +E+ KEVA
Sbjct: 4   SQSHSCRRN---TLRILASVSVSDPGVRTGPEELSASILSKVTNSDRGVLLKEEQQKEVA 60

Query: 94  EVAQELQKYCVEAPVKCPLIFGEWDVVYCSVPTSPGGGYRSAFGRLFFKTKEMIQAVEAP 153
           + A+ELQ YCV  PVKCPLIFG+WDVVYCSVPTSPGGGYRS  GRLF KTKEMIQ +EAP
Sbjct: 61  KEAEELQNYCVSEPVKCPLIFGDWDVVYCSVPTSPGGGYRSTLGRLFLKTKEMIQVIEAP 120

Query: 154 DTVRNKVSFTALGFLDGEVSL 174
           D V+NKVSF+  GFLDGEVSL
Sbjct: 121 DIVKNKVSFSIFGFLDGEVSL 141

Source: Eriobotrya japonica

Species: Eriobotrya japonica

Genus: Eriobotrya

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	176
TAIR|locus:2147720	239	AT5G19940 [Arabidopsis thalian	0.971	0.715	0.578	7.9e-46

TAIR|locus:2147720 AT5G19940 [Arabidopsis thaliana (taxid:3702)]

 Score = 481 (174.4 bits), Expect = 7.9e-46, P = 7.9e-46
 Identities = 103/178 (57%), Positives = 124/178 (69%)

Query:     1 MAAAAFSLTLSSPVSKPHTFCTSYYSKPINASFSASLPCK----RSPRTALKIVRAVSIS 56
             MAA A SLT++S  S+P T   S  S+ +N     S+P K    RS R  L +V +VS  
Sbjct:     1 MAATASSLTIASSFSEPRTQIHS--SRRLNLPLQYSIPYKVLRSRSRRLGL-VVSSVSAP 57

Query:    57 SPDLRTGPDDLVASILSKVNQSDGGVSLXXXXXXXXXXXXXXLQKYCVEAPVKCPLIFGE 116
             + +LRTGPDDL++++LSKV  SDGGV+L              LQKYCV+ PVK PLIFG+
Sbjct:    58 NVELRTGPDDLISTLLSKVANSDGGVTLSPEQHKEVAQVAGELQKYCVKEPVKNPLIFGD 117

Query:   117 WDVVYCSVPTSPGGGYRSAFGRLFFKTKEMIQAVEAPDTVRNKVSFTALGFLDGEVSL 174
             W+VVYCS PTSPGGGYRS  GRLFFKTKEMIQA++APD VRNKVS  A GFLDG+VSL
Sbjct:   118 WEVVYCSRPTSPGGGYRSVIGRLFFKTKEMIQAIDAPDIVRNKVSINAFGFLDGDVSL 175


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.318   0.132   0.392    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      176       162   0.00079  107 3  11 22  0.37    32
                                                     30  0.44    34


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  579 (62 KB)
  Total size of DFA:  137 KB (2085 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  13.07u 0.11s 13.18t   Elapsed:  00:00:01
  Total cpu time:  13.07u 0.11s 13.18t   Elapsed:  00:00:01
  Start:  Sat May 11 03:59:17 2013   End:  Sat May 11 03:59:18 2013

GO:0005198 "structural molecule activity" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM;IEA;IDA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0009534 "chloroplast thylakoid" evidence=IDA

GO:0019344 "cysteine biosynthetic process" evidence=RCA

GO:0019684 "photosynthesis, light reaction" evidence=RCA

GO:0019761 "glucosinolate biosynthetic process" evidence=RCA

GO:0030003 "cellular cation homeostasis" evidence=RCA

GO:0035304 "regulation of protein dephosphorylation" evidence=RCA

GO:0070838 "divalent metal ion transport" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q941D3	PAP8_ARATH	No assigned EC number	0.6292	0.9715	0.7154	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00032347001	SubName- Full=Chromosome chr4 scaffold_6, whole genome shotgun sequence; (238 aa)
		(Vitis vinifera)
Predicted Functional Partners:
	GSVIVG00034383001	SubName- Full=Putative uncharacterized protein (Chromosome chr9 scaffold_7, whole genome shotgu [...] (144 aa)				•					0.427

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	176
PF04755	198	PAP_fibrillin: PAP_fibrillin; InterPro: IPR006843	99.94
TIGR02116	80	toxin_Txe_YoeB toxin-antitoxin system, toxin compo	85.66

>PF04755 PAP_fibrillin: PAP_fibrillin; InterPro: IPR006843 This family identifies a conserved domain found in a number of plastid lipid-associated proteins (PAPs) that are thought to form together with other plastoglobulins a coat on the surface of the lipoprotein particle

Probab=99.94  E-value=7.4e-27  Score=185.90  Aligned_cols=109  Identities=29%  Similarity=0.543  Sum_probs=98.5

Q ss_pred             hHHHHHHHHhhccCCCCccCCHHHHHHHHHHHHHHhhhCC-CCCCCC-CCccceEEEEEecCCCCCCCCccccccee-ee
Q 030512           65 DDLVASILSKVNQSDGGVSLAKEEHKEVAEVAQELQKYCV-EAPVKC-PLIFGEWDVVYCSVPTSPGGGYRSAFGRL-FF  141 (176)
Q Consensus        65 ~~Lk~~LL~aIagtdRG~~aS~e~r~~V~~~i~qLE~~np-p~Pl~s-pLL~G~W~LlYTSs~~~~GG~~Rs~lgR~-lf  141 (176)
                      ++||++||+++++||||+.+++++|++|+++|.+||++|| |+|+++ ++|+|+|+|+|||++...+...+   ++. ++
T Consensus         1 ~~~K~~Ll~~~~~~~rG~~~~~~~~~~i~~~v~~LE~~np~~~p~~s~~~L~G~W~Lvytt~~~~~~~l~~---~~~~~~   77 (198)
T PF04755_consen    1 QDLKQELLQAVAGTNRGLRASPEDREEIEELVEELEALNPTPDPADSLPLLDGRWELVYTTSPEIRSLLQR---GRLPGV   77 (198)
T ss_pred             ChHHHHHHHHHhccCCCccCCHHHHHHHHHHHHHHHHhCCCCCCcCCchhcCcEEEEEeecCCCccccccc---cccccc
Confidence            4799999999999999999999999999999999999999 999999 79999999999999988764333   333 57


Q ss_pred             eecceEEEeeCCc-eEeEEEEEEEecceeeEEEeeC
Q 030512          142 KTKEMIQAVEAPD-TVRNKVSFTALGFLDGEVSLKA  176 (176)
Q Consensus       142 k~~ei~Q~I~~p~-~V~N~Vef~~~g~L~G~Vsl~g  176 (176)
                      ++++|+|.|+..+ ++.|.|+|..||+++|.+.+.+
T Consensus        78 ~~~~v~Q~id~~~~~~~N~v~~~~~~~~~~~~~v~a  113 (198)
T PF04755_consen   78 RVGRVFQTIDADNGRVENVVELSGFPLLEGSVSVRA  113 (198)
T ss_pred             cccceEEEEECCCceEEEEEEEeccCceEEEEEEEE
Confidence            8899999999999 9999999999999999888753

The coat may contain receptors for attachment to the thylakoid membrane as well as regulatory proteins that may function in the transfer of lipids to and from the thylakoid membranes.). This entry also represents a number of putative fibrillin proteins.; GO: 0005198 structural molecule activity, 0009507 chloroplast

>TIGR02116 toxin_Txe_YoeB toxin-antitoxin system, toxin component, Txe/YoeB family

Probab=85.66  E-value=2.1  Score=30.26  Aligned_cols=32  Identities=16%  Similarity=0.185  Sum_probs=20.6

Q ss_pred             CHHHHHHHHHHHHHHhhhCC-CCCCCCCCccceE
Q 030512           85 AKEEHKEVAEVAQELQKYCV-EAPVKCPLIFGEW  117 (176)
Q Consensus        85 S~e~r~~V~~~i~qLE~~np-p~Pl~spLL~G~W  117 (176)
                      .++.+++|.+++.+|+ .|| +...+.--|.|+|
T Consensus        16 ~~~~~~~i~~~i~~l~-~~P~~~~~~~~~L~G~~   48 (80)
T TIGR02116        16 DKKLKKKINELIKDVR-RDPFKGKGKPEPLKGDL   48 (80)
T ss_pred             CHHHHHHHHHHHHHHH-cCCCCCCCCcccCCCCC
Confidence            3678899999999887 355 3223333466655

The Axe-Txe pair in Enterococcus faecium and the homologous YefM-YoeB pair in Escherichia coli have been shown to act as an antitoxin-toxin pair. This model describes the toxin component. Nearly every example found is next to an identifiable antitoxin, as indicated by matches to TIGR01552 and/or pfam02604.

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	176
2a6s_A	84	Toxin YOEB; YEFM, antitoxin, addiction modules, RN	83.43
1z8m_A	88	Conserved hypothetical protein HP0894; structural	82.2

>2a6s_A Toxin YOEB; YEFM, antitoxin, addiction modules, RNAse, inhibitor; 1.77A {Escherichia coli} SCOP: d.298.1.1 PDB: 2a6r_A 2a6q_E

Probab=83.43  E-value=1.1  Score=29.74  Aligned_cols=18  Identities=17%  Similarity=0.289  Sum_probs=13.4

Q ss_pred             HHHHHHHHHHHHHHhhhCC
Q 030512           86 KEEHKEVAEVAQELQKYCV  104 (176)
Q Consensus        86 ~e~r~~V~~~i~qLE~~np  104 (176)
                      +...++|.+++..|.. ||
T Consensus        21 ~~~~~~i~~~i~~l~~-~P   38 (84)
T 2a6s_A           21 KRIVKKINELIKDTRR-TP   38 (84)
T ss_dssp             HHHHHHHHHHHHHHHH-ST
T ss_pred             HHHHHHHHHHHHHHHh-CC
Confidence            5556888888888865 56

>1z8m_A Conserved hypothetical protein HP0894; structural genomics, helicobac pylori, unknown function; NMR {Helicobacter pylori} SCOP: d.298.1.2

Probab=82.20  E-value=0.54  Score=31.50  Aligned_cols=15  Identities=27%  Similarity=0.135  Sum_probs=10.7

Q ss_pred             HHHHHHHHHHhhhCC
Q 030512           90 KEVAEVAQELQKYCV  104 (176)
Q Consensus        90 ~~V~~~i~qLE~~np  104 (176)
                      +++.+++..|..-||
T Consensus        25 ~~~~~~i~~l~~~~p   39 (88)
T 1z8m_A           25 SVLNEVILTLRKKEP   39 (88)
T ss_dssp             HHHHHHHHHHTTSCC
T ss_pred             HHHHHHHHHHhcCCC
Confidence            567888888865466

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00