Citrus Sinensis ID: 030517

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170------
Protein Sequence
MLLRSSSTPILNSWIPHAKDSSPVPFTLTASSSPCDSLKSMTRTLSETDLRSLPLPKKKATSNVFNGLALEEKEDESETASFDGGWLGKEACEIGVLVGGGIYGGGGNMCGGGGGSDGGDGDGRWGSWDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEVNFCSKSFSFY
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHcccccccccccccHHHHHccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccccccccccEcccccccccHHHHHHHHccccccccccccccccccccccccEEccccccccEcccccccccccccEEEEEcccccccccccccccccccccccccccccccccccccccccHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHcccccc
Coil and Loop (DISEMBL)
mllrssstpilnswiphakdsspvpftltassspcdslkSMTRtlsetdlrslplpkkkatsnvFNGLAleekedesetasfdggwlgkeACEIGVLVgggiyggggnmcgggggsdggdgdgrwgswdpnnhgnnstdLYYQKMiqadprnpllLSNYARFLKEVNFcsksfsfy
Flexible Loop (DISEMBL)
mllrssstpilnswiphakdsspVPFTLtassspcdsLKSMTRTLsetdlrslplpkkkatsnVFNGlaleekedesetASFDGGWLGKEACEIGVLVGGGIYGGGGNMCGGGGGSDGGDGDGRWGSWDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEVNFCSKSFSFY
Low Complexity Region (SEG)
MLLRSSSTPILNSWIPHAKDSSPVPFTLTASSSPCDSLKSMTRTLSETDLRSLPLPKKKATSNVFNGLALEEKEDESETASFDGGWLGKEACEIGVLVgggiyggggnmcgggggsdggdgdgrwgSWDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEVNFCSKSFSFY
Disordered region (IsUnstruct)
*********************************************************************************FDGGWLGKEACEIGVLVGGGIYGG*********************************DLYYQKMIQADPRNPLLLSNYARFLKEVNFCSK*****
Disordered Region (DISOPRED)
MLLRSSSTPI************************************************************************************************GN*****************************TDLYYQKMIQADPRNPLLLSNYARFLKEVNFCSKSFSFY
Disordered Region (DISEMBL)
MLLRSSSTPILNSWIPHAKDSSPVPFTLTASSSPCDSLKSMTRTLSETDLRSLPLPKKKATSNVFNGLALE**********FDGGWLGKEACEIGVLVGGGIYGGGGNMCGGGGGSDGGDGDGRWGSWDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEVNFCSKSFSFY
Disordered Region (DISPRO)
********PILN*****************************************PLP******N*************SETASFDGGWLGKEACEIGVLVGGGIYGGGGNMCGGG*****GDGDGRWGSWDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEVNFCSKSFSF*
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MLLRSSSTPILNSWIPHAKDSSPVPFTLTASSSPCDSLKSMTRTLSETDLRSLPLPKKKATSNVFNGLALEEKEDESETASFDGGWLGKEACEIGVLVGGGIYGGGGNMCGGGGGSDGGDGDGRWGSWDPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEVNFCSKSFSFY
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	176
118486453	304	unknown [Populus trichocarpa]	0.931	0.539	0.482	4e-27
224144203	194	predicted protein [Populus trichocarpa]	0.914	0.829	0.484	3e-26
224090403	304	predicted protein [Populus trichocarpa]	0.937	0.542	0.427	2e-23
225445531	288	PREDICTED: uncharacterized protein LOC10	0.880	0.538	0.476	7e-20
449464638	293	PREDICTED: uncharacterized protein LOC10	0.937	0.563	0.433	1e-18
449523397	297	PREDICTED: uncharacterized protein LOC10	0.937	0.555	0.433	2e-18
357478127	292	hypothetical protein MTR_4g114690 [Medic	0.914	0.551	0.4	2e-18
388492190	292	unknown [Medicago truncatula]	0.914	0.551	0.4	2e-18
217073634	292	unknown [Medicago truncatula]	0.863	0.520	0.387	3e-18
356519331	315	PREDICTED: uncharacterized protein LOC10	0.931	0.520	0.371	4e-17

>gi|118486453|gb|ABK95066.1| unknown [Populus trichocarpa]

 Score =  126 bits (316), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 97/201 (48%), Positives = 116/201 (57%), Gaps = 37/201 (18%)

Query: 1   MLLRSSSTPILNSWIP-HAKDSSP-----------VPFTLTASSSPC---------DSLK 39
           MLLRSSSTP LNSWIP H+K+ SP            P +LTASSS           DS+K
Sbjct: 1   MLLRSSSTPFLNSWIPPHSKEPSPEPESVHQIQKTRPISLTASSSSPFSSISSQDHDSIK 60

Query: 40  SMTRTLSETDLRSLPLPKKKATSNVFNGLALEEKEDESETASFDGGWLGKEACEIG---- 95
            MTR  SE DLR L +PK+K ++ + NG+ ++E+ +E    SF  G L  E CE G    
Sbjct: 61  RMTRAFSEADLRDLSVPKRKPSNGILNGIPVDEEVEEK--VSFWEGGLFFEGCEAGEKGE 118

Query: 96  -------VLVGGGIYGGGGN-MCGGGGGSDGGDGDGRWGSWDPNNHGNNSTDLYYQKMIQ 147
                  VLV GG   GGG   CGG G SD GD DG  GS + +N G  +TD YYQ MI+
Sbjct: 119 GDNGVLEVLVTGGGGDGGGRKFCGGRGRSDFGD-DGGSGSRE-SNEGIETTDAYYQTMIE 176

Query: 148 ADPRNPLLLSNYARFLKEVNF 168
           A+P NPL L NYARFLKEV  
Sbjct: 177 ANPGNPLFLRNYARFLKEVRL 197

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224144203|ref|XP_002325218.1| predicted protein [Populus trichocarpa] gi|222866652|gb|EEF03783.1| predicted protein [Populus trichocarpa]

 Score =  123 bits (309), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 96/198 (48%), Positives = 115/198 (58%), Gaps = 37/198 (18%)

Query: 1   MLLRSSSTPILNSWIP-HAKDSSP-----------VPFTLTASSSPC---------DSLK 39
           MLLRSSSTP LNSWIP H+K+ SP            P +LTASSS           DS+K
Sbjct: 1   MLLRSSSTPFLNSWIPPHSKEPSPEPESVHQIQKTRPISLTASSSSPFSSISSQDHDSIK 60

Query: 40  SMTRTLSETDLRSLPLPKKKATSNVFNGLALEEKEDESETASFDGGWLGKEACEIG---- 95
            MTR  SE DLR L +PK+K ++ + NG+ ++E+ +E    SF  G L  E CE G    
Sbjct: 61  RMTRAFSEADLRDLSVPKRKPSNGILNGIPVDEEVEEK--VSFWEGGLFFEGCEAGEKGE 118

Query: 96  -------VLVGGGIYGGGGN-MCGGGGGSDGGDGDGRWGSWDPNNHGNNSTDLYYQKMIQ 147
                  VLV GG   GGG   CGG G SD GD DG  GS + +N G  +TD YYQ MI+
Sbjct: 119 GDNGVLEVLVTGGGGDGGGRKFCGGRGRSDFGD-DGGSGSRE-SNEGIETTDAYYQTMIE 176

Query: 148 ADPRNPLLLSNYARFLKE 165
           A+P NPL L NYARFLKE
Sbjct: 177 ANPGNPLFLRNYARFLKE 194

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224090403|ref|XP_002308981.1| predicted protein [Populus trichocarpa] gi|222854957|gb|EEE92504.1| predicted protein [Populus trichocarpa]

 Score =  114 bits (285), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 86/201 (42%), Positives = 110/201 (54%), Gaps = 36/201 (17%)

Query: 1   MLLRSSSTPILNSWIP-HAKDSSPVPFTL--------------------TASSSPCDSLK 39
           MLLRSSSTPILN+WIP H+K+ SP P +L                    + SS   DS+K
Sbjct: 1   MLLRSSSTPILNTWIPPHSKEPSPEPESLHQIQKSRSISLTASSSSSFSSISSQDNDSIK 60

Query: 40  SMTRTLSETDLRSLPLPKKKATSNVFNGLALEEKEDESETAS---FDGGWLGKEACEIGV 96
            MTR  SETDLR L +PK+K ++ + NG++++E+ +E         + GW   E CE+GV
Sbjct: 61  RMTRAFSETDLRDLSVPKRKPSNRILNGISVDEEVEEEVEKKVSFLESGWFF-EGCEVGV 119

Query: 97  LVGGGIYGGGGNMC----------GGGGGSDGGDGDGRWGSWDPNNHGNNSTDLYYQKMI 146
             G    G  G M              GG     GD     +  +N G  STD+YYQKMI
Sbjct: 120 -KGQSDSGMLGVMVTGGGSEGGGGKFYGGGGSDFGDDGGSGFGESNKGIESTDVYYQKMI 178

Query: 147 QADPRNPLLLSNYARFLKEVN 167
           +ADP NPLLLSNYA+FLKEV 
Sbjct: 179 EADPGNPLLLSNYAKFLKEVR 199

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225445531|ref|XP_002285275.1| PREDICTED: uncharacterized protein LOC100257716 [Vitis vinifera] gi|297738966|emb|CBI28211.3| unnamed protein product [Vitis vinifera]

 Score =  102 bits (253), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 91/191 (47%), Positives = 113/191 (59%), Gaps = 36/191 (18%)

Query: 1   MLLRSSSTPILNSWIPHAKDSSP----VPFTLTA---------SSSPCDSLKSMTRTLSE 47
           MLLRSSSTPILNSW P++K+SS     VP  L +          SS   S K M+R LSE
Sbjct: 1   MLLRSSSTPILNSWPPNSKESSSEPEMVPQILLSRSISLTTSSLSSVEGSSKKMSRALSE 60

Query: 48  TDLRSLPLPKKK---ATSNVFNGLALEEKEDE-----SETASFDGGW--LGKEA-CEIGV 96
           TDLR L LPK+K    T N  + L ++E+E+E     S TAS+ G W  +G +A CE GV
Sbjct: 61  TDLRELSLPKRKPITKTVNRLSSLPVDEREEEDSCPISRTASYGGLWWGVGSDAGCE-GV 119

Query: 97  LVGGGIYGGGGNMCGGGGGSDG-GDGDGRWGSWDPNNHGNNSTDLYYQKMIQADPRNPLL 155
            V GG  GGGG+  G   G  G GD          +N+GN + + YY+ MI+A+P N LL
Sbjct: 120 CVEGGSEGGGGSDGGYAHGKSGYGD----------SNNGNGNMESYYRTMIEANPGNALL 169

Query: 156 LSNYARFLKEV 166
           L NYARFLKEV
Sbjct: 170 LGNYARFLKEV 180

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449464638|ref|XP_004150036.1| PREDICTED: uncharacterized protein LOC101218093 [Cucumis sativus]

 Score = 97.8 bits (242), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 82/189 (43%), Positives = 105/189 (55%), Gaps = 24/189 (12%)

Query: 1   MLLRSSSTPILNSWIPHAKDSS---------PVPFTLTASSSPC-------DSLKSMTRT 44
           M+LRS+STP+LNSW+ H++DSS         P   ++  S SP        DS + +TRT
Sbjct: 1   MILRSASTPLLNSWLHHSRDSSLEPEIVHQIPKSRSILLSGSPSCLSPIIDDSPRRITRT 60

Query: 45  LSETDLRSLPLPKKKATSNVFNGLALEEKEDE------SETASFDGGWLGKEACEIGVLV 98
           LSETDL+ L + K K  S   +G +   +E        S+TAS   G +  E  E G  V
Sbjct: 61  LSETDLKDLSMAKMKPFSRTLSGFSEMAEETHGVGFSCSKTASLSCGSIS-ETGEDGGFV 119

Query: 99  GGGIYGGGGNMCGGGGGSDGGDGDGRWG-SWDPNNHGNNSTDLYYQKMIQADPRNPLLLS 157
              + GG G   G   G  G DG   W   +  +N GN STDLYYQKMI+A+P N +LLS
Sbjct: 120 SVLVGGGVGGSGGRIHGGGGSDGGDDWSFGFGDSNRGNESTDLYYQKMIEANPGNSMLLS 179

Query: 158 NYARFLKEV 166
           NYARFLKEV
Sbjct: 180 NYARFLKEV 188

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449523397|ref|XP_004168710.1| PREDICTED: uncharacterized protein LOC101231631 [Cucumis sativus]

 Score = 97.4 bits (241), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 82/189 (43%), Positives = 105/189 (55%), Gaps = 24/189 (12%)

Query: 1   MLLRSSSTPILNSWIPHAKDSS---------PVPFTLTASSSPC-------DSLKSMTRT 44
           M+LRS+STP+LNSW+ H++DSS         P   ++  S SP        DS + +TRT
Sbjct: 1   MILRSASTPLLNSWLHHSRDSSLEPEIVHQIPKSRSILLSGSPSCLSPIIDDSPRRITRT 60

Query: 45  LSETDLRSLPLPKKKATSNVFNGLALEEKEDE------SETASFDGGWLGKEACEIGVLV 98
           LSETDL+ L + K K  S   +G +   +E        S+TAS   G +  E  E G  V
Sbjct: 61  LSETDLKDLSMAKMKPFSRTLSGFSEMAEETHGVGFSCSKTASLSCGSIS-ETGEDGGFV 119

Query: 99  GGGIYGGGGNMCGGGGGSDGGDGDGRWG-SWDPNNHGNNSTDLYYQKMIQADPRNPLLLS 157
              + GG G   G   G  G DG   W   +  +N GN STDLYYQKMI+A+P N +LLS
Sbjct: 120 SVLVGGGVGGSGGRIHGGGGSDGGDDWSFGFGDSNRGNESTDLYYQKMIEANPGNSMLLS 179

Query: 158 NYARFLKEV 166
           NYARFLKEV
Sbjct: 180 NYARFLKEV 188

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357478127|ref|XP_003609349.1| hypothetical protein MTR_4g114690 [Medicago truncatula] gi|355510404|gb|AES91546.1| hypothetical protein MTR_4g114690 [Medicago truncatula]

 Score = 97.4 bits (241), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 78/195 (40%), Positives = 99/195 (50%), Gaps = 34/195 (17%)

Query: 1   MLLRSSSTPILNSWIPH--AKDSSPVPFTL------------------TASSSPCDSLKS 40
           MLLRSSSTP++N WIPH  +KDSSP P  L                  ++ S  C S+  
Sbjct: 1   MLLRSSSTPVMNPWIPHTNSKDSSPEPEFLHRIPKSRSVTLSASSSTSSSRSPICGSVSK 60

Query: 41  MTRTLSETDLRSLPLPKKKATSNVFNGLALEEKE----DESETASFDGGW-----LGKEA 91
           MTR LSETDL S  L +K      F+    E +       S TASF           +  
Sbjct: 61  MTRALSETDLSSQ-LNRKPLHRRQFDEDEEESRTGTFGARSRTASFSSALCSLTEFEESQ 119

Query: 92  CEIGVLVGGGIYGGGGNMCGGGGGSDGGDGDGRWGSWDPNNHGNNSTDLYYQKMIQADPR 151
            E+    GG +        GGG   + G G  R+G    +NHGN+STDLYY+ MI+A+P 
Sbjct: 120 SEVDARDGGSMLVLVEEGGGGGFDKNDG-GVSRFGD---SNHGNDSTDLYYRTMIEANPG 175

Query: 152 NPLLLSNYARFLKEV 166
           NPL L NYA++LKEV
Sbjct: 176 NPLFLGNYAKYLKEV 190

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388492190|gb|AFK34161.1| unknown [Medicago truncatula]

 Score = 97.4 bits (241), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 78/195 (40%), Positives = 99/195 (50%), Gaps = 34/195 (17%)

Query: 1   MLLRSSSTPILNSWIPH--AKDSSPVPFTL------------------TASSSPCDSLKS 40
           MLLRSSSTP++N WIPH  +KDSSP P  L                  ++ S  C S+  
Sbjct: 1   MLLRSSSTPVMNPWIPHTNSKDSSPEPEFLHRIPKSRSVTLSASSSTSSSRSPICGSVSK 60

Query: 41  MTRTLSETDLRSLPLPKKKATSNVFNGLALEEKE----DESETASFDGGW-----LGKEA 91
           MTR LSETDL S  L +K      F+    E +       S TASF           +  
Sbjct: 61  MTRALSETDLSSQ-LNRKPLHRRQFDEDEEESRTGTFGARSRTASFSSALCSLTEFEESQ 119

Query: 92  CEIGVLVGGGIYGGGGNMCGGGGGSDGGDGDGRWGSWDPNNHGNNSTDLYYQKMIQADPR 151
            E+    GG +        GGG   + G G  R+G    +NHGN+STDLYY+ MI+A+P 
Sbjct: 120 SEVDARDGGSMLVLVEEGGGGGFDKNDG-GVSRFGD---SNHGNDSTDLYYRTMIEANPG 175

Query: 152 NPLLLSNYARFLKEV 166
           NPL L NYA++LKEV
Sbjct: 176 NPLFLGNYAKYLKEV 190

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|217073634|gb|ACJ85177.1| unknown [Medicago truncatula]

 Score = 97.1 bits (240), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 79/204 (38%), Positives = 102/204 (50%), Gaps = 52/204 (25%)

Query: 1   MLLRSSSTPILNSWIPH--AKDSSPVPFTL------------------TASSSPCDSLKS 40
           MLLRSSSTP++N WIPH  +KDSSP P  L                  ++ S  C S+  
Sbjct: 1   MLLRSSSTPVMNPWIPHTNSKDSSPEPEFLHRIPKSRSVTLSASSSTSSSRSPICGSVSK 60

Query: 41  MTRTLSETDLRSL----PLPKKKATSNVFNGLALEEKEDES---------ETASFDGGW- 86
           MTR LSETDL S     PL +++           +E E+ES          TASF     
Sbjct: 61  MTRALSETDLSSQLNRKPLHRRQ----------FDEDEEESGTGTFGARSRTASFSSALC 110

Query: 87  ----LGKEACEIGVLVGGGIYGGGGNMCGGGGGSDGGDGDGRWGSWDPNNHGNNSTDLYY 142
                 +   E+    GG +        GGG   + G G  R+G    +NHGN+STDLYY
Sbjct: 111 SLTEFEESQSEVDARDGGSMLVLVEEGGGGGFDKNDG-GVSRFGD---SNHGNDSTDLYY 166

Query: 143 QKMIQADPRNPLLLSNYARFLKEV 166
           + MI+A+P NPL L NYA++LKEV
Sbjct: 167 RTMIEANPGNPLFLGNYAKYLKEV 190

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356519331|ref|XP_003528326.1| PREDICTED: uncharacterized protein LOC100784802 [Glycine max]

 Score = 92.8 bits (229), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 75/202 (37%), Positives = 105/202 (51%), Gaps = 38/202 (18%)

Query: 1   MLLRSSSTPILNSWIPHAKDSSPVPFTLTASSSPCDSLKSMTRTLSETDLRSLPLPKKK- 59
           MLLRSSS PIL S + ++K+    P  +        +L S++++L + DL++   P++K 
Sbjct: 1   MLLRSSSAPILTSLLFYSKEFPSEPEHILHLPKTASAL-SLSQSLVDIDLKNSSSPRRKN 59

Query: 60  --ATSNVFNGLA-------LEEKEDESET------------ASFD--GGWLGKEACEIGV 96
               SNV N           E K+ + +T            +SFD   G L  E C  G 
Sbjct: 60  RVPLSNVPNNQQSIKINERYEGKDPQQKTFMKAKPSILELFSSFDLDKGVLDHEECGAGK 119

Query: 97  --------LVGGGIYGGGGNMCGG----GGGSDGGDGDGRWGSWDPNNHGNNSTDLYYQK 144
                   ++G G+   GG +CGG    G GSDGG G  RWG  + N+HG + TD YYQ 
Sbjct: 120 KDSWLQTSVMGAGMGSDGGWICGGCNGSGRGSDGGHG-RRWGFDEGNDHGRDRTDAYYQN 178

Query: 145 MIQADPRNPLLLSNYARFLKEV 166
           MI+A+P + LLL NYA+FLKEV
Sbjct: 179 MIEANPSDALLLGNYAKFLKEV 200

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	176
TAIR|locus:2149314	290	AT5G20190 "AT5G20190" [Arabido	0.215	0.131	0.552	3.5e-13
TAIR|locus:2016229	305	AT1G80130 [Arabidopsis thalian	0.176	0.101	0.580	1.2e-09
TAIR|locus:2127781	238	AT4G32340 "AT4G32340" [Arabido	0.187	0.138	0.666	4.9e-05

TAIR|locus:2149314 AT5G20190 "AT5G20190" [Arabidopsis thaliana (taxid:3702)]

 Score = 117 (46.2 bits), Expect = 3.5e-13, Sum P(2) = 3.5e-13
 Identities = 21/38 (55%), Positives = 32/38 (84%)

Query:   129 DPNNHGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEV 166
             D  + G+++TD++Y+KMI+A+P N + LSNYA+FLKEV
Sbjct:   147 DGGDGGDDNTDVHYRKMIEANPGNGIFLSNYAKFLKEV 184

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

TAIR|locus:2016229 AT1G80130 [Arabidopsis thaliana (taxid:3702)]

 Score = 99 (39.9 bits), Expect = 1.2e-09, Sum P(2) = 1.2e-09
 Identities = 18/31 (58%), Positives = 25/31 (80%)

Query:   136 NSTDLYYQKMIQADPRNPLLLSNYARFLKEV 166
             ++TD YY++MI ++P N LL  NYA+FLKEV
Sbjct:   163 DATDTYYREMIDSNPGNSLLTGNYAKFLKEV 193

GO:0016020 "membrane" evidence=IDA

GO:0006979 "response to oxidative stress" evidence=IMP

TAIR|locus:2127781 AT4G32340 "AT4G32340" [Arabidopsis thaliana (taxid:3702)]

 Score = 106 (42.4 bits), Expect = 4.9e-05, P = 4.9e-05
 Identities = 22/33 (66%), Positives = 25/33 (75%)

Query:   134 GNNSTDLYYQKMIQADPRNPLLLSNYARFLKEV 166
             G  S D YY++MIQ  P + LLLSNYARFLKEV
Sbjct:   106 GGGSVDGYYEEMIQRYPGDTLLLSNYARFLKEV 138


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.313   0.128   0.383    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      176       148   0.00068  104 3  11 23  0.39    32
                                                     30  0.39    34


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  3
  No. of states in DFA:  580 (62 KB)
  Total size of DFA:  147 KB (2090 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  14.63u 0.09s 14.72t   Elapsed:  00:00:00
  Total cpu time:  14.63u 0.09s 14.72t   Elapsed:  00:00:00
  Start:  Sat May 11 04:07:11 2013   End:  Sat May 11 04:07:11 2013

GO:0009965 "leaf morphogenesis" evidence=RCA

GO:0030154 "cell differentiation" evidence=RCA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: grail3.0073006901 hypothetical protein (194 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	176
PLN03138	796	PLN03138, PLN03138, Protein TOC75; Provisional	3e-04

>gnl|CDD|215598 PLN03138, PLN03138, Protein TOC75; Provisional

 Score = 39.8 bits (93), Expect = 3e-04
 Identities = 36/172 (20%), Positives = 59/172 (34%), Gaps = 28/172 (16%)

Query: 5   SSSTPILNSWIPHAKDSSPVPFTLTASSSPCDSLKSMTRTLSETDLRSLPLPKKKATSNV 64
           ++++  L+S  P     S         S    S        +             ATS+ 
Sbjct: 10  AAASTSLSSSRPQLSSFSSRSPQSATRSPRASS--IKCSASAS--------ASSSATSSS 59

Query: 65  FNGLALEEKEDESETASFDGGWLGKEACEIGVLVGGGIYGGGGNMCGGGGGSDGGDGDGR 124
            + +A       S  ++  GG  G          GGG +GG G   GGGGG  GG G   
Sbjct: 60  ASLVANGAVALLS-ASAISGGGGG----------GGGGFGGFGG--GGGGGGGGGGGWRF 106

Query: 125 WG---SWDPNNHGNNSTDLYYQKMIQADPRNPL-LLSNYARF-LKEVNFCSK 171
           W    +    +     +  +    +  +   PL  LS + R+ + E+ F  +
Sbjct: 107 WLRLFAPADAHADEEQSGDWDSHGLPVNITVPLSKLSGFKRYKVSEIEFFDR 158

Length = 796

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	176
PF13431	34	TPR_17: Tetratricopeptide repeat	97.38
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	94.45
PF13428	44	TPR_14: Tetratricopeptide repeat	93.35
smart00386	33	HAT HAT (Half-A-TPR) repeats. Present in several R	92.96
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	91.01
PF13371	73	TPR_9: Tetratricopeptide repeat	90.37
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	88.66
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	88.58
PRK14720	906	transcript cleavage factor/unknown domain fusion p	87.28
PLN03138	796	Protein TOC75; Provisional	86.61
PF00244	236	14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14	85.82
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	85.3

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=97.38  E-value=0.00011  Score=45.09  Aligned_cols=32  Identities=22%  Similarity=0.248  Sum_probs=27.7

Q ss_pred             HHHHHHHhCCCCchhhhhHHHHHHHHhhcCccc
Q 030517          141 YYQKMIQADPRNPLLLSNYARFLKEVNFCSKSF  173 (176)
Q Consensus       141 yY~~mi~~~P~N~LlL~NYAqFL~~V~~D~~r~  173 (176)
                      .|+|+|+.||+|+..+-|+|.+|+. .+|.+.+
T Consensus         1 ~y~kAie~~P~n~~a~~nla~~~~~-~g~~~~A   32 (34)
T PF13431_consen    1 CYKKAIELNPNNAEAYNNLANLYLN-QGDYEEA   32 (34)
T ss_pred             ChHHHHHHCCCCHHHHHHHHHHHHH-CcCHHhh
Confidence            4899999999999999999999887 6666543

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=94.45  E-value=0.033  Score=49.17  Aligned_cols=31  Identities=35%  Similarity=0.541  Sum_probs=29.7

Q ss_pred             CCcHHHHHHHHHHhCCCCchhhhhHHHHHHH
Q 030517          135 NNSTDLYYQKMIQADPRNPLLLSNYARFLKE  165 (176)
Q Consensus       135 ~~~te~yY~~mi~~~P~N~LlL~NYAqFL~~  165 (176)
                      .+.++++|+++|+.+|+|.=+|-||.-||+.
T Consensus        85 ~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~  115 (250)
T COG3063          85 NDLADESYRKALSLAPNNGDVLNNYGAFLCA  115 (250)
T ss_pred             hhhHHHHHHHHHhcCCCccchhhhhhHHHHh
Confidence            5889999999999999999999999999987

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=93.35  E-value=0.065  Score=33.52  Aligned_cols=28  Identities=14%  Similarity=0.323  Sum_probs=25.6

Q ss_pred             CCCcHHHHHHHHHHhCCCCchhhhhHHH
Q 030517          134 GNNSTDLYYQKMIQADPRNPLLLSNYAR  161 (176)
Q Consensus       134 ~~~~te~yY~~mi~~~P~N~LlL~NYAq  161 (176)
                      ..+.+...|+++|+.+|+|+-.+.++|+
T Consensus        16 ~~~~A~~~~~~~l~~~P~~~~a~~~La~   43 (44)
T PF13428_consen   16 QPDEAERLLRRALALDPDDPEAWRALAQ   43 (44)
T ss_pred             CHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence            4588999999999999999999999886

>smart00386 HAT HAT (Half-A-TPR) repeats

Probab=92.96  E-value=0.15  Score=28.23  Aligned_cols=30  Identities=20%  Similarity=0.347  Sum_probs=27.0

Q ss_pred             CCcHHHHHHHHHHhCCCCchhhhhHHHHHH
Q 030517          135 NNSTDLYYQKMIQADPRNPLLLSNYARFLK  164 (176)
Q Consensus       135 ~~~te~yY~~mi~~~P~N~LlL~NYAqFL~  164 (176)
                      .+.+...|+++|...|.++-+...|++|+.
T Consensus         3 ~~~~r~i~e~~l~~~~~~~~~W~~y~~~e~   32 (33)
T smart00386        3 IERARKIYERALEKFPKSVELWLKYAEFEE   32 (33)
T ss_pred             HHHHHHHHHHHHHHCCCChHHHHHHHHHHh
Confidence            356788999999999999999999999974

Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=91.01  E-value=0.24  Score=31.99  Aligned_cols=35  Identities=17%  Similarity=0.070  Sum_probs=29.8

Q ss_pred             CCcHHHHHHHHHHhCCCCchhhhhHHHHHHHHhhcC
Q 030517          135 NNSTDLYYQKMIQADPRNPLLLSNYARFLKEVNFCS  170 (176)
Q Consensus       135 ~~~te~yY~~mi~~~P~N~LlL~NYAqFL~~V~~D~  170 (176)
                      .+.+..+|+++++.+|+|+-+.-++|+.+.. .++.
T Consensus         7 ~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~-~g~~   41 (68)
T PF14559_consen    7 YDEAIELLEKALQRNPDNPEARLLLAQCYLK-QGQY   41 (68)
T ss_dssp             HHHHHHHHHHHHHHTTTSHHHHHHHHHHHHH-TT-H
T ss_pred             HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH-cCCH
Confidence            4678899999999999999999999999887 3443

...

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=90.37  E-value=0.31  Score=31.88  Aligned_cols=34  Identities=21%  Similarity=0.291  Sum_probs=30.5

Q ss_pred             CCCcHHHHHHHHHHhCCCCchhhhhHHHHHHHHh
Q 030517          134 GNNSTDLYYQKMIQADPRNPLLLSNYARFLKEVN  167 (176)
Q Consensus       134 ~~~~te~yY~~mi~~~P~N~LlL~NYAqFL~~V~  167 (176)
                      ....+..+++++|..+|.++.++.++|.++....
T Consensus        10 ~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g   43 (73)
T PF13371_consen   10 DYEEALEVLERALELDPDDPELWLQRARCLFQLG   43 (73)
T ss_pred             CHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhc
Confidence            4578889999999999999999999999998854

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=88.66  E-value=0.22  Score=32.36  Aligned_cols=33  Identities=21%  Similarity=0.283  Sum_probs=29.4

Q ss_pred             CCcHHHHHHHHHHhCCCCchhhhhHHHHHHHHh
Q 030517          135 NNSTDLYYQKMIQADPRNPLLLSNYARFLKEVN  167 (176)
Q Consensus       135 ~~~te~yY~~mi~~~P~N~LlL~NYAqFL~~V~  167 (176)
                      ...+..+|+++|+.||+|+.++-|.|.-.+...
T Consensus        19 ~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~   51 (69)
T PF13414_consen   19 YEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLG   51 (69)
T ss_dssp             HHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhC
Confidence            477889999999999999999999999877754

...

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=88.58  E-value=0.37  Score=39.50  Aligned_cols=34  Identities=26%  Similarity=0.438  Sum_probs=27.0

Q ss_pred             CCcHHHHHHHHHHhCCCCchhhhhHHHHHHHHhh
Q 030517          135 NNSTDLYYQKMIQADPRNPLLLSNYARFLKEVNF  168 (176)
Q Consensus       135 ~~~te~yY~~mi~~~P~N~LlL~NYAqFL~~V~~  168 (176)
                      ...+-.+|++++..+|+||.++.+||..|.+.-+
T Consensus       230 ~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~~g~  263 (280)
T PF13429_consen  230 YEEALEYLEKALKLNPDDPLWLLAYADALEQAGR  263 (280)
T ss_dssp             HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT----
T ss_pred             cccccccccccccccccccccccccccccccccc
Confidence            4777889999999999999999999999988433

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=87.28  E-value=0.25  Score=50.12  Aligned_cols=39  Identities=18%  Similarity=0.283  Sum_probs=34.0

Q ss_pred             CCCCcHHHHHHHHHHhCCCCchhhhhHHHHHHHHhhcCccc
Q 030517          133 HGNNSTDLYYQKMIQADPRNPLLLSNYARFLKEVNFCSKSF  173 (176)
Q Consensus       133 ~~~~~te~yY~~mi~~~P~N~LlL~NYAqFL~~V~~D~~r~  173 (176)
                      ....++.+.|+++|+.||.|++.|.|||-||-+.  |.+++
T Consensus       130 g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~--dL~KA  168 (906)
T PRK14720        130 NENKKLKGVWERLVKADRDNPEIVKKLATSYEEE--DKEKA  168 (906)
T ss_pred             CChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh--hHHHH
Confidence            3468889999999999999999999999999886  66654

>PLN03138 Protein TOC75; Provisional

Probab=86.61  E-value=1.4  Score=44.41  Aligned_cols=18  Identities=17%  Similarity=0.239  Sum_probs=9.7

Q ss_pred             HHHHHHHHHHhCCCCchh
Q 030517          138 TDLYYQKMIQADPRNPLL  155 (176)
Q Consensus       138 te~yY~~mi~~~P~N~Ll  155 (176)
                      +|+-..+||...|+..+-
T Consensus       166 ~e~~l~~~i~~kpG~v~t  183 (796)
T PLN03138        166 TEDSFFEMVTLRPGGVYT  183 (796)
T ss_pred             hHHHHHHHHhcCCCCccC
Confidence            444555566666664443

>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]

Probab=85.82  E-value=0.48  Score=40.13  Aligned_cols=38  Identities=24%  Similarity=0.352  Sum_probs=31.2

Q ss_pred             CcHHHHHHHHHH-----hCCCCchhhh---hHHHHHHHHhhcCccc
Q 030517          136 NSTDLYYQKMIQ-----ADPRNPLLLS---NYARFLKEVNFCSKSF  173 (176)
Q Consensus       136 ~~te~yY~~mi~-----~~P~N~LlL~---NYAqFL~~V~~D~~r~  173 (176)
                      .++...|+++++     ..|.||+-|+   ||+=|+|++.+|.+.+
T Consensus       143 ~~a~~aY~~A~~~a~~~L~~~~p~rLgl~LN~svF~yei~~~~~~A  188 (236)
T PF00244_consen  143 EKALEAYEEALEIAKKELPPTHPLRLGLALNYSVFYYEILNDPEKA  188 (236)
T ss_dssp             HHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTSS-HHHH
T ss_pred             HHHHHhhhhHHHHHhcccCCCCcHHHHHHHHHHHHHHHHcCChHHH
Confidence            567788998775     5899999887   9999999999987754

There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=85.30  E-value=0.4  Score=30.99  Aligned_cols=36  Identities=17%  Similarity=0.202  Sum_probs=30.3

Q ss_pred             CCcHHHHHHHHHHhCCCCchhhhhHHHHHHHHhhcCc
Q 030517          135 NNSTDLYYQKMIQADPRNPLLLSNYARFLKEVNFCSK  171 (176)
Q Consensus       135 ~~~te~yY~~mi~~~P~N~LlL~NYAqFL~~V~~D~~  171 (176)
                      .+.+...|+++|+.+|+|+-.+-++|+.+++ +++.+
T Consensus        13 ~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~-~g~~~   48 (65)
T PF13432_consen   13 YDEAIAAFEQALKQDPDNPEAWYLLGRILYQ-QGRYD   48 (65)
T ss_dssp             HHHHHHHHHHHHCCSTTHHHHHHHHHHHHHH-TT-HH
T ss_pred             HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH-cCCHH
Confidence            4678899999999999999999999999986 45443

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	176
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	90.04
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	89.47
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	88.87
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	88.28
2l6j_A	111	TPR repeat-containing protein associated with HSP;	87.97
2kat_A	115	Uncharacterized protein; NESG, structure, structur	87.59
3k9i_A	117	BH0479 protein; putative protein binding protein,	87.29
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	86.1
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	85.8
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	85.75
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	85.26
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	84.6
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	84.51
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	84.44
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	84.18
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	84.18
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	83.16
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	82.96
2kat_A	115	Uncharacterized protein; NESG, structure, structur	82.56
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	81.93
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	81.92
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	81.75
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	81.68
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	81.65
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	81.44
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	81.36
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	80.93
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	80.78
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	80.69
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	80.65
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	80.4
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	80.16

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=90.04  E-value=0.14  Score=36.47  Aligned_cols=37  Identities=14%  Similarity=0.246  Sum_probs=28.9

Q ss_pred             CCcHHHHHHHHHHhCCCCchhhhhHHHHHHHHhhcCc
Q 030517          135 NNSTDLYYQKMIQADPRNPLLLSNYARFLKEVNFCSK  171 (176)
Q Consensus       135 ~~~te~yY~~mi~~~P~N~LlL~NYAqFL~~V~~D~~  171 (176)
                      .+.+..+|+++|+.+|+|+-.+-|.|..+....+..+
T Consensus        81 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~  117 (150)
T 4ga2_A           81 TDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDG  117 (150)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSS
T ss_pred             hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHH
Confidence            4677888888888888888888888888877554433

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=89.47  E-value=0.22  Score=34.49  Aligned_cols=35  Identities=26%  Similarity=0.240  Sum_probs=29.9

Q ss_pred             CCcHHHHHHHHHHhCCCCchhhhhHHHHHHHHhhcC
Q 030517          135 NNSTDLYYQKMIQADPRNPLLLSNYARFLKEVNFCS  170 (176)
Q Consensus       135 ~~~te~yY~~mi~~~P~N~LlL~NYAqFL~~V~~D~  170 (176)
                      .+.+..+|+++|+.+|+|+.++.|-|..+.. .++.
T Consensus        24 ~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~-~~~~   58 (127)
T 4gcn_A           24 FEKAHVHYDKAIELDPSNITFYNNKAAVYFE-EKKF   58 (127)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCH
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHhHHHHHHH-hhhH
Confidence            5778899999999999999999999988776 3443

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=88.87  E-value=0.092  Score=45.77  Aligned_cols=38  Identities=11%  Similarity=-0.018  Sum_probs=32.4

Q ss_pred             CCcHHHHHHHHHHhCCCC-chhhhhHHHHHHHHhhcCcc
Q 030517          135 NNSTDLYYQKMIQADPRN-PLLLSNYARFLKEVNFCSKS  172 (176)
Q Consensus       135 ~~~te~yY~~mi~~~P~N-~LlL~NYAqFL~~V~~D~~r  172 (176)
                      .++++.+|+|+|+.||++ ....--||+||..-.+|.+.
T Consensus       220 ~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~  258 (301)
T 3u64_A          220 MEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAG  258 (301)
T ss_dssp             HHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHH
T ss_pred             HHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHH
Confidence            689999999999999975 99999999999875565443

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=88.28  E-value=0.25  Score=30.29  Aligned_cols=31  Identities=26%  Similarity=0.330  Sum_probs=24.8

Q ss_pred             CCcHHHHHHHHHHhCCCCchhhhhHHHHHHH
Q 030517          135 NNSTDLYYQKMIQADPRNPLLLSNYARFLKE  165 (176)
Q Consensus       135 ~~~te~yY~~mi~~~P~N~LlL~NYAqFL~~  165 (176)
                      .+.+..+|+++|+.+|.++..+.|.|..+..
T Consensus        25 ~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~   55 (91)
T 1na3_A           25 YDEAIEYYQKALELDPNNAEAWYNLGNAYYK   55 (91)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence            4667788888888888888888888887765

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=87.97  E-value=0.35  Score=30.65  Aligned_cols=31  Identities=32%  Similarity=0.410  Sum_probs=26.7

Q ss_pred             CCcHHHHHHHHHHhCCCCchhhhhHHHHHHH
Q 030517          135 NNSTDLYYQKMIQADPRNPLLLSNYARFLKE  165 (176)
Q Consensus       135 ~~~te~yY~~mi~~~P~N~LlL~NYAqFL~~  165 (176)
                      ...+..+|+++|+.+|+|+.++.|.|.-+..
T Consensus        20 ~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~   50 (111)
T 2l6j_A           20 YREAVHCYDQLITAQPQNPVGYSNKAMALIK   50 (111)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence            4677889999999999999999999987765

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=87.59  E-value=0.42  Score=31.45  Aligned_cols=30  Identities=10%  Similarity=0.118  Sum_probs=17.4

Q ss_pred             CcHHHHHHHHHHhCCCCchhhhhHHHHHHH
Q 030517          136 NSTDLYYQKMIQADPRNPLLLSNYARFLKE  165 (176)
Q Consensus       136 ~~te~yY~~mi~~~P~N~LlL~NYAqFL~~  165 (176)
                      +.+..+|+++|+.+|.++..+.|+|..+..
T Consensus        36 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~   65 (115)
T 2kat_A           36 DAALPHLRAALDFDPTYSVAWKWLGKTLQG   65 (115)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCcHHHHHHHHHHHHH
Confidence            445555666666666666666566555544

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=87.29  E-value=0.49  Score=31.57  Aligned_cols=32  Identities=16%  Similarity=0.164  Sum_probs=27.5

Q ss_pred             CCcHHHHHHHHHHhCCCCchhhhhHHHHHHHH
Q 030517          135 NNSTDLYYQKMIQADPRNPLLLSNYARFLKEV  166 (176)
Q Consensus       135 ~~~te~yY~~mi~~~P~N~LlL~NYAqFL~~V  166 (176)
                      .+.+..+|+++|+.+|+|+-++-|+|..+...
T Consensus        43 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~   74 (117)
T 3k9i_A           43 YRKAEAVLANGVKQFPNHQALRVFYAMVLYNL   74 (117)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCchHHHHHHHHHHHHc
Confidence            46788899999999999999999999887763

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=86.10  E-value=0.34  Score=33.95  Aligned_cols=36  Identities=19%  Similarity=0.122  Sum_probs=29.1

Q ss_pred             CCcHHHHHHHHHHhCCCCchhhhhHHHHHHHHhhcC
Q 030517          135 NNSTDLYYQKMIQADPRNPLLLSNYARFLKEVNFCS  170 (176)
Q Consensus       135 ~~~te~yY~~mi~~~P~N~LlL~NYAqFL~~V~~D~  170 (176)
                      .+.+..+|+++++.+|+|+.++.++|..|+.-.++.
T Consensus        60 ~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~   95 (177)
T 2e2e_A           60 YSNSLLAYRQALQLRGENAELYAALATVLYYQASQH   95 (177)
T ss_dssp             HHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTC
T ss_pred             HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCc
Confidence            577888899999999999999999998866555554

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=85.80  E-value=0.89  Score=30.88  Aligned_cols=35  Identities=17%  Similarity=0.121  Sum_probs=28.8

Q ss_pred             CCcHHHHHHHHHHhCCCCchhhhhHHHHHHHHhhc
Q 030517          135 NNSTDLYYQKMIQADPRNPLLLSNYARFLKEVNFC  169 (176)
Q Consensus       135 ~~~te~yY~~mi~~~P~N~LlL~NYAqFL~~V~~D  169 (176)
                      ...+-.+|+++++.+|+|+-.+.|.+.|-+..+.+
T Consensus        62 ~~~A~~~~~~al~l~P~~~~~~~n~~~~~~~~~~~   96 (104)
T 2v5f_A           62 LDKALLLTKKLLELDPEHQRANGNLKYFEYIMAKE   96 (104)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCCCCHHHHhhHHHHHHHHHhc
Confidence            46778899999999999999999998666655443

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=85.75  E-value=0.38  Score=34.09  Aligned_cols=36  Identities=11%  Similarity=0.089  Sum_probs=30.6

Q ss_pred             CCcHHHHHHHHHHhCCCCchhhhhHHHHHHHHhhcCc
Q 030517          135 NNSTDLYYQKMIQADPRNPLLLSNYARFLKEVNFCSK  171 (176)
Q Consensus       135 ~~~te~yY~~mi~~~P~N~LlL~NYAqFL~~V~~D~~  171 (176)
                      .+.+..+|+++|+.+|+|+-.+.|.|..+.. .++.+
T Consensus        47 ~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~-~~~~~   82 (150)
T 4ga2_A           47 YDLAKKYICTYINVQERDPKAHRFLGLLYEL-EENTD   82 (150)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHH
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-cCchH
Confidence            5788999999999999999999999988776 44443

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=85.26  E-value=0.54  Score=32.63  Aligned_cols=31  Identities=29%  Similarity=0.426  Sum_probs=26.0

Q ss_pred             CCcHHHHHHHHHHhCCCCchhhhhHHHHHHH
Q 030517          135 NNSTDLYYQKMIQADPRNPLLLSNYARFLKE  165 (176)
Q Consensus       135 ~~~te~yY~~mi~~~P~N~LlL~NYAqFL~~  165 (176)
                      ...+..+|+++|+.+|.|+.++.|.|..+..
T Consensus        29 ~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~   59 (126)
T 4gco_A           29 YPTAMRHYNEAVKRDPENAILYSNRAACLTK   59 (126)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHhhHHHh
Confidence            4677888899999999999999888887776

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=84.60  E-value=0.5  Score=32.60  Aligned_cols=31  Identities=13%  Similarity=-0.036  Sum_probs=22.0

Q ss_pred             CCcHHHHHHHHHHhCCCCchhhhhHHHHHHH
Q 030517          135 NNSTDLYYQKMIQADPRNPLLLSNYARFLKE  165 (176)
Q Consensus       135 ~~~te~yY~~mi~~~P~N~LlL~NYAqFL~~  165 (176)
                      .+.+..+|+++|+.+|+|+..+-|.|..+..
T Consensus        68 ~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~   98 (142)
T 2xcb_A           68 YEQALQSYSYGALMDINEPRFPFHAAECHLQ   98 (142)
T ss_dssp             HHHHHHHHHHHHHHCTTCTHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCCCCcHHHHHHHHHHHH
Confidence            4566777777777777777777777766655

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=84.51  E-value=0.26  Score=38.52  Aligned_cols=36  Identities=8%  Similarity=0.042  Sum_probs=30.1

Q ss_pred             CCcHHHHHHHHHHhCCCCchhhhhHHHHHHHHhhcCc
Q 030517          135 NNSTDLYYQKMIQADPRNPLLLSNYARFLKEVNFCSK  171 (176)
Q Consensus       135 ~~~te~yY~~mi~~~P~N~LlL~NYAqFL~~V~~D~~  171 (176)
                      .+.+...|+++|+.+|+++-++.||++|+.. .++.+
T Consensus       185 ~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~-~g~~~  220 (308)
T 2ond_A          185 KSVAFKIFELGLKKYGDIPEYVLAYIDYLSH-LNEDN  220 (308)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT-TCCHH
T ss_pred             HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH-CCCHH
Confidence            4678899999999999999999999999866 34433

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=84.44  E-value=0.84  Score=28.90  Aligned_cols=31  Identities=6%  Similarity=0.030  Sum_probs=21.9

Q ss_pred             CCcHHHHHHHHHHhCCCCch-hhhhHHHHHHH
Q 030517          135 NNSTDLYYQKMIQADPRNPL-LLSNYARFLKE  165 (176)
Q Consensus       135 ~~~te~yY~~mi~~~P~N~L-lL~NYAqFL~~  165 (176)
                      .+.+..+|+++|+.+|+++. .+-|.|+.+..
T Consensus        16 ~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~   47 (99)
T 2kc7_A           16 IENALQALEEFLQTEPVGKDEAYYLMGNAYRK   47 (99)
T ss_dssp             HHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHH
Confidence            35566777777777777777 77777776655

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=84.18  E-value=0.68  Score=30.67  Aligned_cols=31  Identities=26%  Similarity=0.218  Sum_probs=22.9

Q ss_pred             CCcHHHHHHHHHHhCCCCchhhhhHHHHHHH
Q 030517          135 NNSTDLYYQKMIQADPRNPLLLSNYARFLKE  165 (176)
Q Consensus       135 ~~~te~yY~~mi~~~P~N~LlL~NYAqFL~~  165 (176)
                      ...+..+|+++|+.+|+|+.++.|.|..+..
T Consensus        20 ~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~   50 (126)
T 3upv_A           20 WPNAVKAYTEMIKRAPEDARGYSNRAAALAK   50 (126)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Confidence            4566777788888888888777777776655

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=84.18  E-value=0.97  Score=27.56  Aligned_cols=31  Identities=26%  Similarity=0.354  Sum_probs=27.6

Q ss_pred             CCcHHHHHHHHHHhCCCCchhhhhHHHHHHH
Q 030517          135 NNSTDLYYQKMIQADPRNPLLLSNYARFLKE  165 (176)
Q Consensus       135 ~~~te~yY~~mi~~~P~N~LlL~NYAqFL~~  165 (176)
                      .+.+..+|+++++.+|+++..+.|.++.+..
T Consensus        59 ~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~   89 (91)
T 1na3_A           59 YDEAIEYYQKALELDPNNAEAKQNLGNAKQK   89 (91)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHh
Confidence            4778899999999999999999999987754

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=83.16  E-value=0.89  Score=31.76  Aligned_cols=31  Identities=23%  Similarity=0.305  Sum_probs=27.7

Q ss_pred             CCcHHHHHHHHHHhCCCCchhhhhHHHHHHH
Q 030517          135 NNSTDLYYQKMIQADPRNPLLLSNYARFLKE  165 (176)
Q Consensus       135 ~~~te~yY~~mi~~~P~N~LlL~NYAqFL~~  165 (176)
                      .+.+..+|+++|+.||+|+-.+.+.|..+..
T Consensus        21 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~   51 (184)
T 3vtx_A           21 FDGAIRAYKKVLKADPNNVETLLKLGKTYMD   51 (184)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence            4778899999999999999999999987766

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=82.96  E-value=0.84  Score=30.06  Aligned_cols=36  Identities=6%  Similarity=0.127  Sum_probs=30.1

Q ss_pred             CCcHHHHHHHHHHhCCCCchhhhhHHHHHHHHhhcCc
Q 030517          135 NNSTDLYYQKMIQADPRNPLLLSNYARFLKEVNFCSK  171 (176)
Q Consensus       135 ~~~te~yY~~mi~~~P~N~LlL~NYAqFL~~V~~D~~  171 (176)
                      .+.+..+|+++|+.+|+++..+-|.|+.+.. .++.+
T Consensus        23 ~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~-~g~~~   58 (100)
T 3ma5_A           23 ASRALALFEELVETDPDYVGTYYHLGKLYER-LDRTD   58 (100)
T ss_dssp             HHHHHHHHHHHHHHSTTCTHHHHHHHHHHHH-TTCHH
T ss_pred             HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH-cCCHH
Confidence            5778899999999999999999999987766 44433

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=82.56  E-value=0.7  Score=30.32  Aligned_cols=34  Identities=15%  Similarity=0.056  Sum_probs=27.7

Q ss_pred             cHHHHHHHHHHhCCCCchhhhhHHHHHHHHhhcCc
Q 030517          137 STDLYYQKMIQADPRNPLLLSNYARFLKEVNFCSK  171 (176)
Q Consensus       137 ~te~yY~~mi~~~P~N~LlL~NYAqFL~~V~~D~~  171 (176)
                      .+..+|+++|+.+|+|+.++-|.|..+.. .++.+
T Consensus         3 ~a~~~~~~al~~~p~~~~~~~~lg~~~~~-~g~~~   36 (115)
T 2kat_A            3 AITERLEAMLAQGTDNMLLRFTLGKTYAE-HEQFD   36 (115)
T ss_dssp             CHHHHHHHHHTTTCCCHHHHHHHHHHHHH-TTCHH
T ss_pred             HHHHHHHHHHHhCCCcHHHHHHHHHHHHH-ccCHH
Confidence            46789999999999999999999988766 44443

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=81.93  E-value=0.69  Score=32.29  Aligned_cols=30  Identities=10%  Similarity=-0.041  Sum_probs=15.7

Q ss_pred             CcHHHHHHHHHHhCCCCchhhhhHHHHHHH
Q 030517          136 NSTDLYYQKMIQADPRNPLLLSNYARFLKE  165 (176)
Q Consensus       136 ~~te~yY~~mi~~~P~N~LlL~NYAqFL~~  165 (176)
                      +.+..+|+++|+.+|+|+..+-|.|..++.
T Consensus        62 ~~A~~~~~~al~~~p~~~~~~~~lg~~~~~   91 (164)
T 3sz7_A           62 EKAAEDAELATVVDPKYSKAWSRLGLARFD   91 (164)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence            444555555555555555555555554443

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=81.92  E-value=1.3  Score=27.52  Aligned_cols=31  Identities=26%  Similarity=0.343  Sum_probs=20.2

Q ss_pred             CCcHHHHHHHHHHhCCCCchhhhhHHHHHHH
Q 030517          135 NNSTDLYYQKMIQADPRNPLLLSNYARFLKE  165 (176)
Q Consensus       135 ~~~te~yY~~mi~~~P~N~LlL~NYAqFL~~  165 (176)
                      .+.+..+|+++++.+|+++.++.+.|+.+..
T Consensus        20 ~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~   50 (118)
T 1elw_A           20 IDDALQCYSEAIKLDPHNHVLYSNRSAAYAK   50 (118)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCcHHHHHHHHHHHHh
Confidence            3555666777777777777776666665554

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=81.75  E-value=0.89  Score=31.71  Aligned_cols=36  Identities=22%  Similarity=0.244  Sum_probs=30.4

Q ss_pred             CCcHHHHHHHHHHhCCCCchhhhhHHHHHHHHhhcCc
Q 030517          135 NNSTDLYYQKMIQADPRNPLLLSNYARFLKEVNFCSK  171 (176)
Q Consensus       135 ~~~te~yY~~mi~~~P~N~LlL~NYAqFL~~V~~D~~  171 (176)
                      .+.+..+|+++|+.+|+|+.++.|.|..+.. .++.+
T Consensus        27 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~-~g~~~   62 (164)
T 3sz7_A           27 YSKAIDLYTQALSIAPANPIYLSNRAAAYSA-SGQHE   62 (164)
T ss_dssp             HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH-TTCHH
T ss_pred             HHHHHHHHHHHHHhCCcCHHHHHHHHHHHHH-ccCHH
Confidence            5778899999999999999999999998776 34433

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=81.68  E-value=1.1  Score=27.73  Aligned_cols=31  Identities=19%  Similarity=0.177  Sum_probs=24.9

Q ss_pred             CCcHHHHHHHHHHhCCCCchhhhhHHHHHHH
Q 030517          135 NNSTDLYYQKMIQADPRNPLLLSNYARFLKE  165 (176)
Q Consensus       135 ~~~te~yY~~mi~~~P~N~LlL~NYAqFL~~  165 (176)
                      .+.+..+|+++++.+|.++-.+.|+|..+..
T Consensus        22 ~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~   52 (112)
T 2kck_A           22 YTESIDLFEKAIQLDPEESKYWLMKGKALYN   52 (112)
T ss_dssp             HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCcCCHHHHHHHHHHHHH
Confidence            4667778888888888888888888887765

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=81.65  E-value=1.2  Score=28.08  Aligned_cols=32  Identities=22%  Similarity=0.206  Sum_probs=25.6

Q ss_pred             CCcHHHHHHHHHHhCCCCchhh--hhHHHHHHHH
Q 030517          135 NNSTDLYYQKMIQADPRNPLLL--SNYARFLKEV  166 (176)
Q Consensus       135 ~~~te~yY~~mi~~~P~N~LlL--~NYAqFL~~V  166 (176)
                      .+.+..+|+++|+.+|+|+-.+  .++++.+...
T Consensus        51 ~~~A~~~~~~al~~~p~~~~~~~~~~~~~a~~~~   84 (99)
T 2kc7_A           51 WQKALNNYQSAIELNPDSPALQARKMVMDILNFY   84 (99)
T ss_dssp             HHHHHHHHHHHHHHCTTSTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHH
Confidence            4678899999999999999888  6666655543

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=81.44  E-value=0.75  Score=31.68  Aligned_cols=36  Identities=6%  Similarity=-0.041  Sum_probs=30.1

Q ss_pred             CCcHHHHHHHHHHhCCCCchhhhhHHHHHHHHhhcCc
Q 030517          135 NNSTDLYYQKMIQADPRNPLLLSNYARFLKEVNFCSK  171 (176)
Q Consensus       135 ~~~te~yY~~mi~~~P~N~LlL~NYAqFL~~V~~D~~  171 (176)
                      .+.+..+|+++|..+|+|+.++.|.|..+.. .++.+
T Consensus        34 ~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~-~g~~~   69 (142)
T 2xcb_A           34 WDDAQKIFQALCMLDHYDARYFLGLGACRQS-LGLYE   69 (142)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHH
T ss_pred             HHHHHHHHHHHHHhCCccHHHHHHHHHHHHH-HhhHH
Confidence            5778899999999999999999999998776 44433

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=81.36  E-value=0.75  Score=32.14  Aligned_cols=37  Identities=11%  Similarity=0.004  Sum_probs=30.3

Q ss_pred             CCcHHHHHHHHHHhCCCCchhhhhHHHHHHHHhhcCcc
Q 030517          135 NNSTDLYYQKMIQADPRNPLLLSNYARFLKEVNFCSKS  172 (176)
Q Consensus       135 ~~~te~yY~~mi~~~P~N~LlL~NYAqFL~~V~~D~~r  172 (176)
                      .+.+..+|+++|+.+|.|+..+-|.|..+.. .++.+.
T Consensus       123 ~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~-~g~~~~  159 (184)
T 3vtx_A          123 HDKAIEAYEKTISIKPGFIRAYQSIGLAYEG-KGLRDE  159 (184)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHH
T ss_pred             chhHHHHHHHHHHhcchhhhHHHHHHHHHHH-CCCHHH
Confidence            5788899999999999999999999988776 444443

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=80.93  E-value=0.57  Score=32.54  Aligned_cols=29  Identities=21%  Similarity=0.243  Sum_probs=21.4

Q ss_pred             CCcHHHHHHHHHHhCCCCchhhhhHHHHH
Q 030517          135 NNSTDLYYQKMIQADPRNPLLLSNYARFL  163 (176)
Q Consensus       135 ~~~te~yY~~mi~~~P~N~LlL~NYAqFL  163 (176)
                      .+.+..+|+++|+.||+|+-.+.|+++.|
T Consensus        97 ~~~A~~~~~~al~l~P~~~~a~~~l~~~l  125 (126)
T 4gco_A           97 WSKAQRAYEDALQVDPSNEEAREGVRNCL  125 (126)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHCcCCHHHHHHHHHhc
Confidence            46677778888888888887777776654

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=80.78  E-value=1.1  Score=35.01  Aligned_cols=31  Identities=13%  Similarity=0.243  Sum_probs=27.6

Q ss_pred             CcHHHHHHHHHHhCCCCchhhhhHHHHHHHH
Q 030517          136 NSTDLYYQKMIQADPRNPLLLSNYARFLKEV  166 (176)
Q Consensus       136 ~~te~yY~~mi~~~P~N~LlL~NYAqFL~~V  166 (176)
                      .++...|+++|..+|+++-+.-|||+|+.+.
T Consensus        33 ~~a~~~~~~al~~~p~~~~~w~~~~~~~~~~   63 (308)
T 2ond_A           33 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQS   63 (308)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence            4566799999999999999999999999754

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=80.69  E-value=1.1  Score=29.46  Aligned_cols=31  Identities=16%  Similarity=0.197  Sum_probs=21.7

Q ss_pred             CCcHHHHHHHHHHhCCCCchhhhhHHHHHHH
Q 030517          135 NNSTDLYYQKMIQADPRNPLLLSNYARFLKE  165 (176)
Q Consensus       135 ~~~te~yY~~mi~~~P~N~LlL~NYAqFL~~  165 (176)
                      ...+..+|+++|+.+|.++.++.|.|..+..
T Consensus        25 ~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~   55 (137)
T 3q49_B           25 YPEAAACYGRAITRNPLVAVYYTNRALCYLK   55 (137)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhCcCcHHHHHHHHHHHHH
Confidence            3556677777777777777777777766654

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=80.65  E-value=0.79  Score=33.69  Aligned_cols=31  Identities=10%  Similarity=0.109  Sum_probs=20.1

Q ss_pred             CCcHHHHHHHHHHhCCCCchhhhhHHHHHHH
Q 030517          135 NNSTDLYYQKMIQADPRNPLLLSNYARFLKE  165 (176)
Q Consensus       135 ~~~te~yY~~mi~~~P~N~LlL~NYAqFL~~  165 (176)
                      .+.+..+|+++|+.+|+|+-.+.|.+..++.
T Consensus        52 ~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~   82 (151)
T 3gyz_A           52 IEEAEVFFRFLCIYDFYNVDYIMGLAAIYQI   82 (151)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence            3556666677777777777666666665554

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=80.40  E-value=0.85  Score=32.38  Aligned_cols=31  Identities=16%  Similarity=0.010  Sum_probs=21.8

Q ss_pred             CCcHHHHHHHHHHhCCCCchhhhhHHHHHHH
Q 030517          135 NNSTDLYYQKMIQADPRNPLLLSNYARFLKE  165 (176)
Q Consensus       135 ~~~te~yY~~mi~~~P~N~LlL~NYAqFL~~  165 (176)
                      .+.+..+|+++|+.+|+|+..+-|.|..+..
T Consensus        71 ~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~  101 (148)
T 2vgx_A           71 YDLAIHSYSYGAVMDIXEPRFPFHAAECLLQ  101 (148)
T ss_dssp             HHHHHHHHHHHHHHSTTCTHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCCCCchHHHHHHHHHHH
Confidence            3566677777777777777777777766654

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=80.16  E-value=1.3  Score=31.43  Aligned_cols=29  Identities=17%  Similarity=0.110  Sum_probs=25.4

Q ss_pred             cHHHHHHHHHHhCCCCchhhhhHHHHHHH
Q 030517          137 STDLYYQKMIQADPRNPLLLSNYARFLKE  165 (176)
Q Consensus       137 ~te~yY~~mi~~~P~N~LlL~NYAqFL~~  165 (176)
                      ....+|+++|+.+|+|+-.+-|+|..+..
T Consensus        92 ~a~~~~~~al~~~P~~~~~~~~la~~~~~  120 (176)
T 2r5s_A           92 PELKRLEQELAANPDNFELACELAVQYNQ  120 (176)
T ss_dssp             HHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence            35788999999999999999999998876

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	176
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	94.26
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	93.43
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	88.02
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	86.71
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	85.9
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	85.66
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	84.54
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	84.34
d2o02a1	230	zeta isoform {Cow (Bos taurus) [TaxId: 9913]}	84.27
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	83.48
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	82.54
d1o9da_	236	14-3-3-like protein C {Common tobacco (Nicotiana t	82.02
d3efza1	223	14-3-3 protein cgd1_2980 {Cryptosporidium parvum [	81.32

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.26  E-value=0.016  Score=40.36  Aligned_cols=31  Identities=16%  Similarity=-0.010  Sum_probs=28.0

Q ss_pred             CCcHHHHHHHHHHhCCCCchhhhhHHHHHHH
Q 030517          135 NNSTDLYYQKMIQADPRNPLLLSNYARFLKE  165 (176)
Q Consensus       135 ~~~te~yY~~mi~~~P~N~LlL~NYAqFL~~  165 (176)
                      ..++++.|+++|..+|.++-.+-|||.+|..
T Consensus        15 l~~Ae~~Y~~aL~~~p~~~~~~~n~a~~L~~   45 (122)
T d1nzna_          15 LLKFEKKFQSEKAAGSVSKSTQFEYAWCLVR   45 (122)
T ss_dssp             HHHHHHHHHHHHHHSCCCHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Confidence            3578899999999999999999999999953

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.43  E-value=0.029  Score=36.68  Aligned_cols=32  Identities=19%  Similarity=0.201  Sum_probs=28.6

Q ss_pred             CCcHHHHHHHHHHhCCCCchhhhhHHHHHHHH
Q 030517          135 NNSTDLYYQKMIQADPRNPLLLSNYARFLKEV  166 (176)
Q Consensus       135 ~~~te~yY~~mi~~~P~N~LlL~NYAqFL~~V  166 (176)
                      ...+-.+|+++|+.||+|+-.+.|.+.|-++.
T Consensus        62 ~~~A~~~y~~aL~l~P~~~~a~~Nl~~~~~~l   93 (95)
T d1tjca_          62 LDKALLLTKKLLELDPEHQRANGNLKYFEYIM   93 (95)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHh
Confidence            57788999999999999999999998887664

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=88.02  E-value=0.14  Score=34.81  Aligned_cols=37  Identities=14%  Similarity=0.117  Sum_probs=30.0

Q ss_pred             CCcHHHHHHHHHHhCCCCchhhhhHHHHHHHHhhcCcc
Q 030517          135 NNSTDLYYQKMIQADPRNPLLLSNYARFLKEVNFCSKS  172 (176)
Q Consensus       135 ~~~te~yY~~mi~~~P~N~LlL~NYAqFL~~V~~D~~r  172 (176)
                      ++.+-.+|+++|+.||+|+-++.|.|..+.. .++.+.
T Consensus        20 ~~~Ai~~~~kal~~~p~~~~~~~~lg~~y~~-~~~~~~   56 (201)
T d2c2la1          20 YPEAAACYGRAITRNPLVAVYYTNRALCYLK-MQQPEQ   56 (201)
T ss_dssp             HHHHHHHHHHHHHHCSCCHHHHHHHHHHHHH-TTCHHH
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHhHHHHHhh-hhhhhh
Confidence            5788899999999999999999999987655 444443

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=86.71  E-value=0.27  Score=34.13  Aligned_cols=31  Identities=13%  Similarity=0.188  Sum_probs=27.7

Q ss_pred             CcHHHHHHHHHHhCCCCchhhhhHHHHHHHH
Q 030517          136 NSTDLYYQKMIQADPRNPLLLSNYARFLKEV  166 (176)
Q Consensus       136 ~~te~yY~~mi~~~P~N~LlL~NYAqFL~~V  166 (176)
                      +.+...|+++|+.||+|+-.|.|++.-|...
T Consensus        14 e~A~~~~e~al~~~P~~~~~~~~~g~~l~~~   44 (145)
T d1zu2a1          14 EQIRQDAENTYKSNPLDADNLTRWGGVLLEL   44 (145)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhCCcchHHHHHHHHHHHHh
Confidence            5678899999999999999999999888754

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.90  E-value=0.3  Score=32.73  Aligned_cols=36  Identities=22%  Similarity=0.114  Sum_probs=30.6

Q ss_pred             CCcHHHHHHHHHHhCCCCchhhhhHHHHHHHHhhcCc
Q 030517          135 NNSTDLYYQKMIQADPRNPLLLSNYARFLKEVNFCSK  171 (176)
Q Consensus       135 ~~~te~yY~~mi~~~P~N~LlL~NYAqFL~~V~~D~~  171 (176)
                      .+.+..+|+++|+.+|+|+..+.|.|.-+... ++.+
T Consensus        20 y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~-~~~~   55 (128)
T d1elra_          20 FDTALKHYDKAKELDPTNMTYITNQAAVYFEK-GDYN   55 (128)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH-TCHH
T ss_pred             HHHHHHHHHHHHHhCcccHHHHHhHHHHHHHc-CchH
Confidence            57889999999999999999999999988773 4433

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.66  E-value=0.3  Score=32.28  Aligned_cols=31  Identities=26%  Similarity=0.343  Sum_probs=26.6

Q ss_pred             CCcHHHHHHHHHHhCCCCchhhhhHHHHHHH
Q 030517          135 NNSTDLYYQKMIQADPRNPLLLSNYARFLKE  165 (176)
Q Consensus       135 ~~~te~yY~~mi~~~P~N~LlL~NYAqFL~~  165 (176)
                      .+.+..+|+++|+.||+|+.++.|.|..+..
T Consensus        19 ~~eAi~~~~~al~~~p~~~~~~~~~a~~~~~   49 (117)
T d1elwa_          19 IDDALQCYSEAIKLDPHNHVLYSNRSAAYAK   49 (117)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCCcchhhhhcccccccc
Confidence            4677889999999999999999999987766

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.54  E-value=0.38  Score=32.79  Aligned_cols=32  Identities=16%  Similarity=0.286  Sum_probs=28.6

Q ss_pred             CCcHHHHHHHHHHhCCCCchhhhhHHHHHHHH
Q 030517          135 NNSTDLYYQKMIQADPRNPLLLSNYARFLKEV  166 (176)
Q Consensus       135 ~~~te~yY~~mi~~~P~N~LlL~NYAqFL~~V  166 (176)
                      +..+..+|+++|+.||+|+..+.|+|+.+...
T Consensus        26 y~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~   57 (159)
T d1a17a_          26 YENAIKFYSQAIELNPSNAIYYGNRSLAYLRT   57 (159)
T ss_dssp             HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHhhhccccchhhhhhhhhhHHHHHhc
Confidence            57788999999999999999999999888774

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=84.34  E-value=0.25  Score=37.09  Aligned_cols=30  Identities=13%  Similarity=0.262  Sum_probs=26.9

Q ss_pred             CcHHHHHHHHHHhCCCCchhhhhHHHHHHH
Q 030517          136 NSTDLYYQKMIQADPRNPLLLSNYARFLKE  165 (176)
Q Consensus       136 ~~te~yY~~mi~~~P~N~LlL~NYAqFL~~  165 (176)
                      +++-..|++||...|.+|-|.-+||+|+..
T Consensus        33 ~Rv~~vyerAl~~~~~~~~lW~~y~~~~~~   62 (308)
T d2onda1          33 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQ   62 (308)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence            456678999999999999999999999865

>d2o02a1 a.118.7.1 (A:1-230) zeta isoform {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: 14-3-3 protein
family: 14-3-3 protein
domain: zeta isoform
species: Cow (Bos taurus) [TaxId: 9913]

Probab=84.27  E-value=0.19  Score=39.53  Aligned_cols=38  Identities=21%  Similarity=0.432  Sum_probs=31.8

Q ss_pred             CcHHHHHHHHHH-----hCCCCchhhh---hHHHHHHHHhhcCccc
Q 030517          136 NSTDLYYQKMIQ-----ADPRNPLLLS---NYARFLKEVNFCSKSF  173 (176)
Q Consensus       136 ~~te~yY~~mi~-----~~P~N~LlL~---NYAqFL~~V~~D~~r~  173 (176)
                      .++...|++|++     ..|.||+-|+   ||+=|+|++.+|.+.+
T Consensus       143 ~~a~~aY~~A~~~A~~~L~~t~pirLgL~LN~SVF~YEi~~~~~~A  188 (230)
T d2o02a1         143 DQSQQAYQEAFEISKKEMQPTHPIRLGLALNFSVFYYEILNSPEKA  188 (230)
T ss_dssp             HHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHH
T ss_pred             HHHHHHHHHHHHHHHhcCCCCchHHHHHHHhHHHHHHHHcCCHHHH
Confidence            467888998774     5899999876   9999999999987654

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=83.48  E-value=0.15  Score=38.39  Aligned_cols=37  Identities=8%  Similarity=0.049  Sum_probs=30.7

Q ss_pred             CCcHHHHHHHHHHhCCCCchhhhhHHHHHHHHhhcCcc
Q 030517          135 NNSTDLYYQKMIQADPRNPLLLSNYARFLKEVNFCSKS  172 (176)
Q Consensus       135 ~~~te~yY~~mi~~~P~N~LlL~NYAqFL~~V~~D~~r  172 (176)
                      ...+...|++++..+|.++-++-.||+|+.. .+|.++
T Consensus       185 ~~~a~~i~e~~l~~~p~~~~~w~~y~~~~~~-~g~~~~  221 (308)
T d2onda1         185 KSVAFKIFELGLKKYGDIPEYVLAYIDYLSH-LNEDNN  221 (308)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT-TCCHHH
T ss_pred             HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHH-cCChHH
Confidence            4667788999999999999999999999886 556554

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.54  E-value=0.51  Score=33.45  Aligned_cols=30  Identities=27%  Similarity=0.309  Sum_probs=16.3

Q ss_pred             CcHHHHHHHHHHhCCCCchhhhhHHHHHHH
Q 030517          136 NSTDLYYQKMIQADPRNPLLLSNYARFLKE  165 (176)
Q Consensus       136 ~~te~yY~~mi~~~P~N~LlL~NYAqFL~~  165 (176)
                      +.+..+|+++|+.+|+|+-.+.|.++-|++
T Consensus       356 ~~A~~~~~~al~l~P~~~~a~~~lg~~~~~  385 (388)
T d1w3ba_         356 QEALMHYKEAIRISPTFADAYSNMGNTLKE  385 (388)
T ss_dssp             HHHHHHHHHHHTTCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence            445555555555555555555555554443

>d1o9da_ a.118.7.1 (A:) 14-3-3-like protein C {Common tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: 14-3-3 protein
family: 14-3-3 protein
domain: 14-3-3-like protein C
species: Common tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=82.02  E-value=0.27  Score=38.89  Aligned_cols=38  Identities=24%  Similarity=0.326  Sum_probs=31.4

Q ss_pred             CcHHHHHHHHHH-----hCCCCchhhh---hHHHHHHHHhhcCccc
Q 030517          136 NSTDLYYQKMIQ-----ADPRNPLLLS---NYARFLKEVNFCSKSF  173 (176)
Q Consensus       136 ~~te~yY~~mi~-----~~P~N~LlL~---NYAqFL~~V~~D~~r~  173 (176)
                      .++...|++|++     ..|.||+-|+   ||+=|+|++.+|.+.+
T Consensus       148 ~~a~~aY~~A~~~a~~~l~pt~PirLgLaLN~SVF~yEi~~~~~~A  193 (236)
T d1o9da_         148 ESTLTAYKAAQDIATTELAPTHPIRLGLALNFSVFYYEILNSPDRA  193 (236)
T ss_dssp             HHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHH
T ss_pred             HHHHHHHHHHHHHHHhcCCCCcHHHHHHHHhHHHHHHHHcCCHHHH
Confidence            456788888773     5899999886   9999999999987654

>d3efza1 a.118.7.1 (A:46-268) 14-3-3 protein cgd1_2980 {Cryptosporidium parvum [TaxId: 5807]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: 14-3-3 protein
family: 14-3-3 protein
domain: 14-3-3 protein cgd1 2980
species: Cryptosporidium parvum [TaxId: 5807]

Probab=81.32  E-value=0.16  Score=40.47  Aligned_cols=38  Identities=21%  Similarity=0.357  Sum_probs=30.8

Q ss_pred             CcHHHHHHHHHHh-------CCCCchhhh---hHHHHHHHHhhcCccc
Q 030517          136 NSTDLYYQKMIQA-------DPRNPLLLS---NYARFLKEVNFCSKSF  173 (176)
Q Consensus       136 ~~te~yY~~mi~~-------~P~N~LlL~---NYAqFL~~V~~D~~r~  173 (176)
                      ..+.+.|+++++.       .|.||+.|+   ||+=|+|++.+|.+++
T Consensus       124 ~~a~~aY~~A~~~a~~~l~l~pt~PirLGLaLN~SVF~YEi~~~~~~A  171 (223)
T d3efza1         124 KQAVEFYEDALQRERSFLEKYPSDPLYLATILNYTILKYDLLGNPEGA  171 (223)
T ss_dssp             HHHHHHHHHHHHHHHHHCTTGGGCHHHHHHHHHHHHHHHTTTCCHHHH
T ss_pred             HHHHHHHHHHHHHHHhhhccCccCHHHHHHHHHHHHHHHHHcCCHHHH
Confidence            4578889988642       399998776   9999999999987764