Citrus Sinensis ID: 030532

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-----
Protein Sequence
MSMPQSSSSSGQFTYAAAPAAPTTANSSYFPLPFHLQQTDPTAVSQYPPPAAYPAPVVPSVYAAPVAPVYSLPQYHQAQQLFQRDAQTITPEALESVKAALASSDIEHKAETKKKSIPRKAAGQTWEDPTLAEWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVSFCFT
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHccccccccHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccEEcccccccccHHHHHHHHccccccccEEEEEEEc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHcccccccccHHHHHcHHHHHcccHHcccccccccEEEEEccccEcccccHccccccccEEEEEcccccccHHHHHHHHHccccHcEEEEEEEEc
Coil and Loop (DISEMBL)
msmpqsssssgqftyaaapaapttanssyfplpfhlqqtdptavsqypppaaypapvvpsvyaapvapvyslpqyhQAQQLFQRDAQTITPEALESVKAALASSdiehkaetkkksiprkaagqtwedptlaewpendyrlfcgdlgnevnDDVLSKAFsrfpsfnmakvsfcft
Flexible Loop (DISEMBL)
msmpqsssssgQFTYAAAPAAPTTANSSYFPLPFHLQQTDPTAVSQYPPPAAYPAPVVPSVYAAPVAPVYSLPQYHQAQQLFQRDAQTITPEALESVKAALassdiehkaetkkksiprkaagqtwedptlaewPENDYRLFCGDLGNEVNDDVLSKAfsrfpsfnmakvsfcft
Low Complexity Region (SEG)
MSMPQsssssGQFTYaaapaapttaNSSYFPLPFHLQQTDPTavsqypppaaypapvvpsvyaapvapvysLPQYHQAQQLFQRDAQTITPEALESVKAALASSDIEHKAETKKKSIPRKAAGQTWEDPTLAEWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVSFCFT
Disordered region (IsUnstruct)
****************************YFPLPFHL**************AAYPAPVVPSVYAAPVAPVYSLPQYHQAQQLFQ********************************************DPTLAEWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVSFC**
Disordered Region (DISOPRED)
****************************************************************************************************************************TWEDPTLAEWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVSFCFT
Disordered Region (DISEMBL)
*********************PTTANSSYFPLPFHLQQTDPTAVSQYPPPAAYPAPVVPSVYAAPVAPVYSLPQYHQAQQLFQRDAQTITPEALESVKAALASS*********************WEDPTLAEWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVSFCFT
Disordered Region (DISPRO)
****************AAPAAPTTANSSYFPLPFHLQQTDPTAVSQYPPPAAYPAPVVPSVYAAPVAPVYSLPQYHQAQQLFQRDAQTITPEALESVKAALASS********KKKSIPRKAAGQTWEDPTLAEWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVSFCFT
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSMPQSSSSSGQFTYAAAPAAPTTANSSYFPLPFHLQQTDPTAVSQYPPPAAYPAPVVPSVYAAPVAPVYSLPQYHQAQQLFQRDAQTITPEALESVKAALASSDIEHKAETKKKSIPRKAAGQTWEDPTLAEWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVSFCFT
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	175	2.2.26 [Sep-21-2011]
Q6AXT7	474	RNA-binding protein 42 OS	yes	no	0.297	0.109	0.711	2e-18
Q0P5L0	448	RNA-binding protein 42 OS	yes	no	0.297	0.116	0.711	2e-18
Q91V81	474	RNA-binding protein 42 OS	yes	no	0.297	0.109	0.711	2e-18
Q9BTD8	480	RNA-binding protein 42 OS	yes	no	0.297	0.108	0.711	2e-18
Q66KL9	392	RNA-binding protein 42 OS	yes	no	0.297	0.132	0.673	4e-17
Q6DRG1	402	RNA-binding protein 42 OS	yes	no	0.297	0.129	0.673	5e-17
A2VDB3	392	RNA-binding protein 42 OS	N/A	no	0.297	0.132	0.673	5e-17
Q10355	219	Uncharacterized RNA-bindi	yes	no	0.325	0.260	0.578	4e-14

>sp|Q6AXT7|RBM42_RAT RNA-binding protein 42 OS=Rattus norvegicus GN=Rbm42 PE=1 SV=1

 Score = 92.0 bits (227), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 37/52 (71%), Positives = 45/52 (86%)

Query: 119 RKAAGQTWEDPTLAEWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKV 170
           R AAG +WEDP+L EW  +D+R+FCGDLGNEVNDD+L++AFSRFPSF  AKV
Sbjct: 355 RTAAGSSWEDPSLLEWDADDFRIFCGDLGNEVNDDILARAFSRFPSFLKAKV 406

Binds (via the RRM domain) to the 3' untranslated region (UTR) of p21 mRNA.
Rattus norvegicus (taxid: 10116)

>sp|Q0P5L0|RBM42_BOVIN RNA-binding protein 42 OS=Bos taurus GN=RBM42 PE=2 SV=1

 Score = 92.0 bits (227), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 37/52 (71%), Positives = 45/52 (86%)

Query: 119 RKAAGQTWEDPTLAEWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKV 170
           R AAG +WEDP+L EW  +D+R+FCGDLGNEVNDD+L++AFSRFPSF  AKV
Sbjct: 329 RTAAGSSWEDPSLLEWDADDFRIFCGDLGNEVNDDILARAFSRFPSFLKAKV 380

Binds (via the RRM domain) to the 3'-untranslated region (UTR) of CDKN1A mRNA.

Bos taurus (taxid: 9913)

>sp|Q91V81|RBM42_MOUSE RNA-binding protein 42 OS=Mus musculus GN=Rbm42 PE=1 SV=1

 Score = 92.0 bits (227), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 37/52 (71%), Positives = 45/52 (86%)

Query: 119 RKAAGQTWEDPTLAEWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKV 170
           R AAG +WEDP+L EW  +D+R+FCGDLGNEVNDD+L++AFSRFPSF  AKV
Sbjct: 355 RTAAGSSWEDPSLLEWDADDFRIFCGDLGNEVNDDILARAFSRFPSFLKAKV 406

Binds (via the RRM domain) to the 3'-untranslated region (UTR) of CDKN1A mRNA.

Mus musculus (taxid: 10090)

>sp|Q9BTD8|RBM42_HUMAN RNA-binding protein 42 OS=Homo sapiens GN=RBM42 PE=1 SV=1

 Score = 92.0 bits (227), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 37/52 (71%), Positives = 45/52 (86%)

Query: 119 RKAAGQTWEDPTLAEWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKV 170
           R AAG +WEDP+L EW  +D+R+FCGDLGNEVNDD+L++AFSRFPSF  AKV
Sbjct: 361 RTAAGSSWEDPSLLEWDADDFRIFCGDLGNEVNDDILARAFSRFPSFLKAKV 412

Binds (via the RRM domain) to the 3'-untranslated region (UTR) of CDKN1A mRNA.

Homo sapiens (taxid: 9606)

>sp|Q66KL9|RBM42_XENTR RNA-binding protein 42 OS=Xenopus tropicalis GN=rbm42 PE=2 SV=1

 Score = 87.4 bits (215), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 35/52 (67%), Positives = 44/52 (84%)

Query: 119 RKAAGQTWEDPTLAEWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKV 170
           R AAG +WED +L EW  +D+R+FCGDLGNEVNDD+L++AFSR+PSF  AKV
Sbjct: 273 RTAAGTSWEDQSLLEWESDDFRIFCGDLGNEVNDDILARAFSRYPSFLRAKV 324

May bind RNA.

Xenopus tropicalis (taxid: 8364)

>sp|Q6DRG1|RBM42_DANRE RNA-binding protein 42 OS=Danio rerio GN=rbm42 PE=2 SV=2

 Score = 87.4 bits (215), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 35/52 (67%), Positives = 44/52 (84%)

Query: 119 RKAAGQTWEDPTLAEWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKV 170
           R AAG +WED +L EW  +D+R+FCGDLGNEVNDD+L++AFSR+PSF  AKV
Sbjct: 283 RVAAGVSWEDTSLLEWETDDFRIFCGDLGNEVNDDILARAFSRYPSFLKAKV 334

May bind RNA.

Danio rerio (taxid: 7955)

>sp|A2VDB3|RBM42_XENLA RNA-binding protein 42 OS=Xenopus laevis GN=rbm42 PE=2 SV=1

 Score = 87.0 bits (214), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 35/52 (67%), Positives = 44/52 (84%)

Query: 119 RKAAGQTWEDPTLAEWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKV 170
           R AAG +WED +L EW  +D+R+FCGDLGNEVNDD+L++AFSR+PSF  AKV
Sbjct: 273 RTAAGTSWEDQSLLEWEPDDFRIFCGDLGNEVNDDILARAFSRYPSFLRAKV 324

May bind RNA.

Xenopus laevis (taxid: 8355)

>sp|Q10355|YDB2_SCHPO Uncharacterized RNA-binding protein C22E12.02 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC22E12.02 PE=4 SV=1

 Score = 77.4 bits (189), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 33/57 (57%), Positives = 41/57 (71%)

Query: 114 KKSIPRKAAGQTWEDPTLAEWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKV 170
           K ++ RKA GQ WEDPTL EW  N +RLF G+LGN+VND+ L +AFS +PS    KV
Sbjct: 5   KTTVVRKAGGQVWEDPTLLEWDPNHFRLFVGNLGNDVNDESLYQAFSEYPSLVKTKV 61

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	175
225443254	257	PREDICTED: CUGBP Elav-like family member	0.845	0.575	0.710	3e-62
147806450	257	hypothetical protein VITISV_033169 [Viti	0.845	0.575	0.704	7e-62
359488053	257	PREDICTED: uncharacterized protein LOC10	0.845	0.575	0.751	1e-54
224123552	222	predicted protein [Populus trichocarpa]	0.817	0.644	0.78	2e-53
298204769	221	unnamed protein product [Vitis vinifera]	0.72	0.570	0.744	4e-53
255561937	238	rrm-containing protein, putative [Ricinu	0.777	0.571	0.795	6e-53
297833132	245	hypothetical protein ARALYDRAFT_477706 [	0.8	0.571	0.649	5e-52
356538652	246	PREDICTED: RNA-binding protein 42-like [	0.845	0.601	0.668	9e-52
356576674	247	PREDICTED: RNA-binding protein 42-like [	0.817	0.578	0.692	1e-50
15229308	245	RNA recognition motif-containing protein	0.668	0.477	0.780	3e-50

>gi|225443254|ref|XP_002272469.1| PREDICTED: CUGBP Elav-like family member 5 [Vitis vinifera]

 Score =  242 bits (618), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 125/176 (71%), Positives = 136/176 (77%), Gaps = 28/176 (15%)

Query: 12  QFTYAAAPAAPTTANSSYFPLPFHLQQTDPTAVSQYPPP-----------------AAYP 54
           QFTY+         N+SYFPLPFHLQQ+ P AVSQYP P                  +  
Sbjct: 16  QFTYS---------NASYFPLPFHLQQSGPMAVSQYPQPYVAPSPPPVHVPVPPVKISTI 66

Query: 55  APVVPSVYAAPVAPVYSLPQYHQAQQLFQRDAQTITPEALESVKAALASSDIEHKAETKK 114
           APV P+  +AP A VYSLPQY QA QLFQRDAQTITPEALESVKAALASS+IEHKAETKK
Sbjct: 67  APVYPA--SAPGAGVYSLPQYQQAHQLFQRDAQTITPEALESVKAALASSEIEHKAETKK 124

Query: 115 KSIPRKAAGQTWEDPTLAEWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKV 170
           ++IPRK AGQTWEDPTLA+WPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMA+V
Sbjct: 125 RAIPRKVAGQTWEDPTLADWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMARV 180

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147806450|emb|CAN63219.1| hypothetical protein VITISV_033169 [Vitis vinifera]

 Score =  241 bits (615), Expect = 7e-62,   Method: Compositional matrix adjust.
 Identities = 124/176 (70%), Positives = 136/176 (77%), Gaps = 28/176 (15%)

Query: 12  QFTYAAAPAAPTTANSSYFPLPFHLQQTDPTAVSQYPPP-----------------AAYP 54
           QFTY+         N+SYFPLPFHLQQ+ P AVSQYP P                  +  
Sbjct: 16  QFTYS---------NASYFPLPFHLQQSGPMAVSQYPQPYVAPSPPPVHVPVPPVKISTI 66

Query: 55  APVVPSVYAAPVAPVYSLPQYHQAQQLFQRDAQTITPEALESVKAALASSDIEHKAETKK 114
           APV P+  +AP A VYSLPQY QA QLFQRDAQTITPEALESVKAALASS+IEHKAETKK
Sbjct: 67  APVYPA--SAPGAGVYSLPQYQQAHQLFQRDAQTITPEALESVKAALASSEIEHKAETKK 124

Query: 115 KSIPRKAAGQTWEDPTLAEWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKV 170
           ++IPRK AGQTWEDPTLA+WPENDYRLFCGDLGNEVNDDVLSK+FSRFPSFNMA+V
Sbjct: 125 RAIPRKVAGQTWEDPTLADWPENDYRLFCGDLGNEVNDDVLSKSFSRFPSFNMARV 180

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359488053|ref|XP_002266454.2| PREDICTED: uncharacterized protein LOC100246648 [Vitis vinifera]

 Score =  217 bits (553), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 133/177 (75%), Positives = 139/177 (78%), Gaps = 29/177 (16%)

Query: 12  QFTYAAAPAAPTTANSSYFPLPFHLQQTDPTA-VSQYPPPAAYP---------------- 54
           QFTY+         N+SYFPLPFHLQQ+DP A VSQYP P   P                
Sbjct: 15  QFTYS---------NASYFPLPFHLQQSDPMAAVSQYPKPYVAPPPPPVQVPVPPVKIPA 65

Query: 55  -APVVPSVYAAPVAPVYSLPQYHQAQQLFQRDAQTITPEALESVKAALASSDIEHKAETK 113
            APV P+   APVA VYSLPQY QAQQLFQRDAQTITPEALESVKAALASS+IEHKAETK
Sbjct: 66  VAPVYPA--PAPVAGVYSLPQYQQAQQLFQRDAQTITPEALESVKAALASSEIEHKAETK 123

Query: 114 KKSIPRKAAGQTWEDPTLAEWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKV 170
           KK+IPRKAAGQTWEDPTLAEWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKV
Sbjct: 124 KKAIPRKAAGQTWEDPTLAEWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKV 180

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224123552|ref|XP_002319108.1| predicted protein [Populus trichocarpa] gi|222857484|gb|EEE95031.1| predicted protein [Populus trichocarpa]

 Score =  213 bits (542), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 117/150 (78%), Positives = 127/150 (84%), Gaps = 7/150 (4%)

Query: 23  TTANSSYFPLPFHLQQTDPTAVSQYPPP-AAYPAPVVPSVYA-APVAPVYSLPQYHQAQQ 80
           T AN +YFP PFHLQQ+DP     YP P    P  V+  VY  AP+ PVYSLPQY QAQQ
Sbjct: 1   TAANGTYFPTPFHLQQSDP-----YPKPYVTSPPTVMAPVYPPAPIGPVYSLPQYQQAQQ 55

Query: 81  LFQRDAQTITPEALESVKAALASSDIEHKAETKKKSIPRKAAGQTWEDPTLAEWPENDYR 140
           LFQRDAQTITPEALE VKAALASS+IEHKAETKKK++PRKAAG TWEDPTLAEWPENDYR
Sbjct: 56  LFQRDAQTITPEALEGVKAALASSEIEHKAETKKKAVPRKAAGLTWEDPTLAEWPENDYR 115

Query: 141 LFCGDLGNEVNDDVLSKAFSRFPSFNMAKV 170
           +FCGDLGNEVNDDVLSKAFSRFPSFN+A+V
Sbjct: 116 VFCGDLGNEVNDDVLSKAFSRFPSFNLARV 145

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|298204769|emb|CBI25267.3| unnamed protein product [Vitis vinifera]

 Score =  212 bits (540), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 108/145 (74%), Positives = 116/145 (80%), Gaps = 19/145 (13%)

Query: 43  AVSQYPPP-----------------AAYPAPVVPSVYAAPVAPVYSLPQYHQAQQLFQRD 85
           AVSQYP P                  +  APV P+  +AP A VYSLPQY QA QLFQRD
Sbjct: 2   AVSQYPQPYVAPSPPPVHVPVPPVKISTIAPVYPA--SAPGAGVYSLPQYQQAHQLFQRD 59

Query: 86  AQTITPEALESVKAALASSDIEHKAETKKKSIPRKAAGQTWEDPTLAEWPENDYRLFCGD 145
           AQTITPEALESVKAALASS+IEHKAETKK++IPRK AGQTWEDPTLA+WPENDYRLFCGD
Sbjct: 60  AQTITPEALESVKAALASSEIEHKAETKKRAIPRKVAGQTWEDPTLADWPENDYRLFCGD 119

Query: 146 LGNEVNDDVLSKAFSRFPSFNMAKV 170
           LGNEVNDDVLSKAFSRFPSFNMA+V
Sbjct: 120 LGNEVNDDVLSKAFSRFPSFNMARV 144

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255561937|ref|XP_002521977.1| rrm-containing protein, putative [Ricinus communis] gi|223538781|gb|EEF40381.1| rrm-containing protein, putative [Ricinus communis]

 Score =  211 bits (538), Expect = 6e-53,   Method: Compositional matrix adjust.
 Identities = 117/147 (79%), Positives = 125/147 (85%), Gaps = 11/147 (7%)

Query: 26  NSSYFPLPFHLQQTDPTAVSQYPP--PAAYPAPVVPSVYAAPVAPVYSLPQYHQAQQLFQ 83
           N+S FPLPFHLQQ         PP  P A   PVV  VY+APV  VY+LPQY QAQQLFQ
Sbjct: 24  NNSIFPLPFHLQQ---------PPLQPYAPVQPVVAPVYSAPVGSVYTLPQYQQAQQLFQ 74

Query: 84  RDAQTITPEALESVKAALASSDIEHKAETKKKSIPRKAAGQTWEDPTLAEWPENDYRLFC 143
           RDAQTITPEALE VKAALASS+IEHKAETKKK++PRKAAGQ+WEDPTLAEWPENDYRLFC
Sbjct: 75  RDAQTITPEALEGVKAALASSEIEHKAETKKKAVPRKAAGQSWEDPTLAEWPENDYRLFC 134

Query: 144 GDLGNEVNDDVLSKAFSRFPSFNMAKV 170
           GDLGNEVNDDVLSKAFSRFPSFNMA+V
Sbjct: 135 GDLGNEVNDDVLSKAFSRFPSFNMARV 161

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297833132|ref|XP_002884448.1| hypothetical protein ARALYDRAFT_477706 [Arabidopsis lyrata subsp. lyrata] gi|297330288|gb|EFH60707.1| hypothetical protein ARALYDRAFT_477706 [Arabidopsis lyrata subsp. lyrata]

 Score =  208 bits (530), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 111/171 (64%), Positives = 126/171 (73%), Gaps = 31/171 (18%)

Query: 12  QFTYAAAPAAPTTANSSYFPLPFHLQQTDPTAVSQYPPPAAYPAPVVPS---------VY 62
           Q+TYAA         +SY+  P+   Q          P AA P+P VPS         VY
Sbjct: 17  QYTYAA---------NSYYSAPYQPPQ----------PYAAAPSPAVPSPVASVPGATVY 57

Query: 63  AAPVAPV---YSLPQYHQAQQLFQRDAQTITPEALESVKAALASSDIEHKAETKKKSIPR 119
           + PV PV   Y+ PQY QA QLFQRDAQTITPEALE+VKAALASS+ EHKAETKK++IPR
Sbjct: 58  SQPVGPVPAVYAYPQYQQAHQLFQRDAQTITPEALENVKAALASSETEHKAETKKRAIPR 117

Query: 120 KAAGQTWEDPTLAEWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKV 170
           KAAGQ+WEDPTL+EWPENDYRLFCGDLGNEVNDDVLSKAF+RFP+FNMAKV
Sbjct: 118 KAAGQSWEDPTLSEWPENDYRLFCGDLGNEVNDDVLSKAFTRFPTFNMAKV 168

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356538652|ref|XP_003537815.1| PREDICTED: RNA-binding protein 42-like [Glycine max]

 Score =  207 bits (528), Expect = 9e-52,   Method: Compositional matrix adjust.
 Identities = 111/166 (66%), Positives = 127/166 (76%), Gaps = 18/166 (10%)

Query: 12  QFTYAAAPAAPTTANSSYFPLPFHLQQTDPTAVSQYPPPAAYPA------PVVPSVYAAP 65
           QFTY+          SSYFP+PFHLQQ  P       P  A P+      P+V  V  AP
Sbjct: 15  QFTYSNP--------SSYFPVPFHLQQ--PATTHYAAPYVAAPSVQIPAPPIVGPVVPAP 64

Query: 66  VAPVYS-LPQYHQAQQLFQRDAQTITPEALESVKAALASSDIEHKAETKKKSIPRKAAGQ 124
           VA VYS +PQY QAQQLF+RDAQ ITPEALE+VKAA+ASSD+EHKA+ KKK++PRKAAGQ
Sbjct: 65  VAGVYSTVPQY-QAQQLFERDAQIITPEALENVKAAIASSDVEHKADAKKKAVPRKAAGQ 123

Query: 125 TWEDPTLAEWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKV 170
           +WEDP LAEWPE+DYRLFCGDLGNEVNDDVLSK FSRFPSFN+A+V
Sbjct: 124 SWEDPILAEWPEDDYRLFCGDLGNEVNDDVLSKVFSRFPSFNLARV 169

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356576674|ref|XP_003556455.1| PREDICTED: RNA-binding protein 42-like [Glycine max]

 Score =  204 bits (518), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 106/153 (69%), Positives = 122/153 (79%), Gaps = 10/153 (6%)

Query: 25  ANSSYFPLPFHLQQTDPTAVSQYPPPAAYPA------PVVPSVYAAPVAPVYS-LPQYHQ 77
           ++SSYFP+PFHLQQ  P       P  A P+      PVV  +  APV  VYS +PQY Q
Sbjct: 21  SSSSYFPVPFHLQQ--PATTHYAAPYVAAPSVQIPAPPVVGPIAPAPVPGVYSAVPQY-Q 77

Query: 78  AQQLFQRDAQTITPEALESVKAALASSDIEHKAETKKKSIPRKAAGQTWEDPTLAEWPEN 137
           AQQLF+RDAQ ITPEALE+VKAA+ASSD+EHK + KKK++PRKAAGQ WEDP LAEWPE+
Sbjct: 78  AQQLFERDAQIITPEALENVKAAIASSDVEHKTDAKKKAVPRKAAGQAWEDPILAEWPED 137

Query: 138 DYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKV 170
           DYRLFCGDLGNEVNDDVLSKAFSRFPSFN+A+V
Sbjct: 138 DYRLFCGDLGNEVNDDVLSKAFSRFPSFNLARV 170

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15229308|ref|NP_187100.1| RNA recognition motif-containing protein [Arabidopsis thaliana] gi|7547109|gb|AAF63781.1| unknown protein [Arabidopsis thaliana] gi|26451670|dbj|BAC42931.1| unknown protein [Arabidopsis thaliana] gi|28973333|gb|AAO63991.1| putative RRM-containing protein [Arabidopsis thaliana] gi|332640568|gb|AEE74089.1| RNA recognition motif-containing protein [Arabidopsis thaliana]

 Score =  202 bits (515), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 96/123 (78%), Positives = 105/123 (85%), Gaps = 6/123 (4%)

Query: 48  PPPAAYPAPVVPSVYAAPVAPVYSLPQYHQAQQLFQRDAQTITPEALESVKAALASSDIE 107
           P    YP PV       PV  VY+ PQY QA QLFQRDAQTITPEALE+VKAALASS+ E
Sbjct: 52  PGATVYPQPV------GPVPAVYAYPQYQQAHQLFQRDAQTITPEALENVKAALASSETE 105

Query: 108 HKAETKKKSIPRKAAGQTWEDPTLAEWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNM 167
           HKAETKK++IPRKAAGQ+WEDPTL+EWPENDYRLFCGDLGNEVNDDVLSKAF+RFP+FNM
Sbjct: 106 HKAETKKRAIPRKAAGQSWEDPTLSEWPENDYRLFCGDLGNEVNDDVLSKAFARFPTFNM 165

Query: 168 AKV 170
           AKV
Sbjct: 166 AKV 168

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	175
TAIR|locus:2100840	245	AT3G04500 [Arabidopsis thalian	0.56	0.4	0.887	1.2e-44
FB|FBgn0037342	302	CG2931 [Drosophila melanogaste	0.457	0.264	0.511	3.1e-19
WB|WBGene00021901	302	tag-262 [Caenorhabditis elegan	0.354	0.205	0.612	2.2e-18
UNIPROTKB|F1N7X9	448	RBM42 "RNA-binding protein 42"	0.434	0.169	0.589	3.5e-18
UNIPROTKB|Q0P5L0	448	RBM42 "RNA-binding protein 42"	0.434	0.169	0.589	3.5e-18
UNIPROTKB|K7EQ03	426	RBM42 "RNA-binding protein 42"	0.434	0.178	0.589	3.8e-18
UNIPROTKB|K7EP90	458	RBM42 "RNA-binding protein 42"	0.434	0.165	0.589	4.9e-18
MGI|MGI:1915285	474	Rbm42 "RNA binding motif prote	0.434	0.160	0.589	5.4e-18
RGD|1306184	474	Rbm42 "RNA binding motif prote	0.434	0.160	0.589	5.4e-18
UNIPROTKB|Q6AXT7	474	Rbm42 "RNA-binding protein 42"	0.434	0.160	0.589	5.4e-18

TAIR|locus:2100840 AT3G04500 [Arabidopsis thaliana (taxid:3702)]

 Score = 470 (170.5 bits), Expect = 1.2e-44, P = 1.2e-44
 Identities = 87/98 (88%), Positives = 95/98 (96%)

Query:    73 PQYHQAQQLFQRDAQTITPEALESVKAALASSDIEHKAETKKKSIPRKAAGQTWEDPTLA 132
             PQY QA QLFQRDAQTITPEALE+VKAALASS+ EHKAETKK++IPRKAAGQ+WEDPTL+
Sbjct:    71 PQYQQAHQLFQRDAQTITPEALENVKAALASSETEHKAETKKRAIPRKAAGQSWEDPTLS 130

Query:   133 EWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKV 170
             EWPENDYRLFCGDLGNEVNDDVLSKAF+RFP+FNMAKV
Sbjct:   131 EWPENDYRLFCGDLGNEVNDDVLSKAFARFPTFNMAKV 168

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0003723 "RNA binding" evidence=ISS

GO:0008150 "biological_process" evidence=ND

FB|FBgn0037342 CG2931 [Drosophila melanogaster (taxid:7227)]

 Score = 230 (86.0 bits), Expect = 3.1e-19, P = 3.1e-19
 Identities = 43/84 (51%), Positives = 62/84 (73%)

Query:    91 PEALESVKAALASSDIEHKAETKKKSIPRK----AAGQTWEDPTLAEWPENDYRLFCGDL 146
             P A E++KAA ASS ++    T++K   RK    A G  WED +LA+WP++D+R+FCGDL
Sbjct:   146 PIAEEAIKAARASSALQSFQTTERKKKDRKTVRIAGGTVWEDTSLADWPDDDFRIFCGDL 205

Query:   147 GNEVNDDVLSKAFSRFPSFNMAKV 170
             GN+VND+VL++ F++FPSF  A+V
Sbjct:   206 GNDVNDEVLTRTFNKFPSFQRARV 229

GO:0003729 "mRNA binding" evidence=ISS

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0071013 "catalytic step 2 spliceosome" evidence=IDA

GO:0000398 "mRNA splicing, via spliceosome" evidence=IC

GO:0071011 "precatalytic spliceosome" evidence=IDA

GO:0022008 "neurogenesis" evidence=IMP

WB|WBGene00021901 tag-262 [Caenorhabditis elegans (taxid:6239)]

 Score = 222 (83.2 bits), Expect = 2.2e-18, P = 2.2e-18
 Identities = 38/62 (61%), Positives = 48/62 (77%)

Query:   109 KAETKKKSIPRKAAGQTWEDPTLAEWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMA 168
             K +  KK   R   GQ WEDP+LAEW END+R+FCGDLGNEV+D++L+KAF ++PSF  A
Sbjct:   173 KEQQAKKKFVRSGGGQVWEDPSLAEWDENDFRVFCGDLGNEVSDELLAKAFRKYPSFQKA 232

Query:   169 KV 170
             KV
Sbjct:   233 KV 234

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0000003 "reproduction" evidence=IMP

UNIPROTKB|F1N7X9 RBM42 "RNA-binding protein 42" [Bos taurus (taxid:9913)]

 Score = 226 (84.6 bits), Expect = 3.5e-18, P = 3.5e-18
 Identities = 46/78 (58%), Positives = 57/78 (73%)

Query:    93 ALESVKAALASSDIEHKAETKKKSIPRKAAGQTWEDPTLAEWPENDYRLFCGDLGNEVND 152
             ALE V   L+    + K E  K+ I R AAG +WEDP+L EW  +D+R+FCGDLGNEVND
Sbjct:   305 ALE-VPEPLSEDKKKGKPEKLKRCI-RTAAGSSWEDPSLLEWDADDFRIFCGDLGNEVND 362

Query:   153 DVLSKAFSRFPSFNMAKV 170
             D+L++AFSRFPSF  AKV
Sbjct:   363 DILARAFSRFPSFLKAKV 380

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

UNIPROTKB|Q0P5L0 RBM42 "RNA-binding protein 42" [Bos taurus (taxid:9913)]

 Score = 226 (84.6 bits), Expect = 3.5e-18, P = 3.5e-18
 Identities = 46/78 (58%), Positives = 57/78 (73%)

Query:    93 ALESVKAALASSDIEHKAETKKKSIPRKAAGQTWEDPTLAEWPENDYRLFCGDLGNEVND 152
             ALE V   L+    + K E  K+ I R AAG +WEDP+L EW  +D+R+FCGDLGNEVND
Sbjct:   305 ALE-VPEPLSEDKKKGKPEKLKRCI-RTAAGSSWEDPSLLEWDADDFRIFCGDLGNEVND 362

Query:   153 DVLSKAFSRFPSFNMAKV 170
             D+L++AFSRFPSF  AKV
Sbjct:   363 DILARAFSRFPSFLKAKV 380

GO:0005737 "cytoplasm" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0003723 "RNA binding" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

UNIPROTKB|K7EQ03 RBM42 "RNA-binding protein 42" [Homo sapiens (taxid:9606)]

 Score = 225 (84.3 bits), Expect = 3.8e-18, P = 3.8e-18
 Identities = 46/78 (58%), Positives = 56/78 (71%)

Query:    93 ALESVKAALASSDIEHKAETKKKSIPRKAAGQTWEDPTLAEWPENDYRLFCGDLGNEVND 152
             ALE V   L     + K E  K+ I R AAG +WEDP+L EW  +D+R+FCGDLGNEVND
Sbjct:   283 ALE-VPEPLGEDKKKGKPEKLKRCI-RTAAGSSWEDPSLLEWDADDFRIFCGDLGNEVND 340

Query:   153 DVLSKAFSRFPSFNMAKV 170
             D+L++AFSRFPSF  AKV
Sbjct:   341 DILARAFSRFPSFLKAKV 358

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

UNIPROTKB|K7EP90 RBM42 "RNA-binding protein 42" [Homo sapiens (taxid:9606)]

 Score = 225 (84.3 bits), Expect = 4.9e-18, P = 4.9e-18
 Identities = 46/78 (58%), Positives = 56/78 (71%)

Query:    93 ALESVKAALASSDIEHKAETKKKSIPRKAAGQTWEDPTLAEWPENDYRLFCGDLGNEVND 152
             ALE V   L     + K E  K+ I R AAG +WEDP+L EW  +D+R+FCGDLGNEVND
Sbjct:   315 ALE-VPEPLGEDKKKGKPEKLKRCI-RTAAGSSWEDPSLLEWDADDFRIFCGDLGNEVND 372

Query:   153 DVLSKAFSRFPSFNMAKV 170
             D+L++AFSRFPSF  AKV
Sbjct:   373 DILARAFSRFPSFLKAKV 390

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

MGI|MGI:1915285 Rbm42 "RNA binding motif protein 42" [Mus musculus (taxid:10090)]

 Score = 225 (84.3 bits), Expect = 5.4e-18, P = 5.4e-18
 Identities = 46/78 (58%), Positives = 56/78 (71%)

Query:    93 ALESVKAALASSDIEHKAETKKKSIPRKAAGQTWEDPTLAEWPENDYRLFCGDLGNEVND 152
             ALE V   L     + K E  K+ I R AAG +WEDP+L EW  +D+R+FCGDLGNEVND
Sbjct:   331 ALE-VPEPLGEDKKKGKPEKLKRCI-RTAAGSSWEDPSLLEWDADDFRIFCGDLGNEVND 388

Query:   153 DVLSKAFSRFPSFNMAKV 170
             D+L++AFSRFPSF  AKV
Sbjct:   389 DILARAFSRFPSFLKAKV 406

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0003723 "RNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

RGD|1306184 Rbm42 "RNA binding motif protein 42" [Rattus norvegicus (taxid:10116)]

 Score = 225 (84.3 bits), Expect = 5.4e-18, P = 5.4e-18
 Identities = 46/78 (58%), Positives = 56/78 (71%)

Query:    93 ALESVKAALASSDIEHKAETKKKSIPRKAAGQTWEDPTLAEWPENDYRLFCGDLGNEVND 152
             ALE V   L     + K E  K+ I R AAG +WEDP+L EW  +D+R+FCGDLGNEVND
Sbjct:   331 ALE-VPEPLGEDKKKGKPEKLKRCI-RTAAGSSWEDPSLLEWDADDFRIFCGDLGNEVND 388

Query:   153 DVLSKAFSRFPSFNMAKV 170
             D+L++AFSRFPSF  AKV
Sbjct:   389 DILARAFSRFPSFLKAKV 406

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0003723 "RNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

UNIPROTKB|Q6AXT7 Rbm42 "RNA-binding protein 42" [Rattus norvegicus (taxid:10116)]

 Score = 225 (84.3 bits), Expect = 5.4e-18, P = 5.4e-18
 Identities = 46/78 (58%), Positives = 56/78 (71%)

Query:    93 ALESVKAALASSDIEHKAETKKKSIPRKAAGQTWEDPTLAEWPENDYRLFCGDLGNEVND 152
             ALE V   L     + K E  K+ I R AAG +WEDP+L EW  +D+R+FCGDLGNEVND
Sbjct:   331 ALE-VPEPLGEDKKKGKPEKLKRCI-RTAAGSSWEDPSLLEWDADDFRIFCGDLGNEVND 388

Query:   153 DVLSKAFSRFPSFNMAKV 170
             D+L++AFSRFPSF  AKV
Sbjct:   389 DILARAFSRFPSFLKAKV 406

GO:0000166 "nucleotide binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	175
cd12383	83	cd12383, RRM_RBM42, RNA recognition motif in RNA-b	6e-24
cd12619	75	cd12619, RRM2_PUB1, RNA recognition motif 2 in yea	6e-06
cd12612	82	cd12612, RRM2_SECp43, RNA recognition motif 2 in t	1e-04
cd12345	80	cd12345, RRM2_SECp43_like, RNA recognition motif 2	0.003

>gnl|CDD|240829 cd12383, RRM_RBM42, RNA recognition motif in RNA-binding protein 42 (RBM42) and similar proteins

 Score = 89.2 bits (222), Expect = 6e-24
 Identities = 27/38 (71%), Positives = 34/38 (89%)

Query: 133 EWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKV 170
           EWPEND+R+F GDLGNEV D+VL++AFS++PSF  AKV
Sbjct: 1   EWPENDFRIFVGDLGNEVTDEVLARAFSKYPSFQKAKV 38

This subfamily corresponds to the RRM of RBM42 which has been identified as a heterogeneous nuclear ribonucleoprotein K (hnRNP K)-binding protein. It also directly binds the 3' untranslated region of p21 mRNA that is one of the target mRNAs for hnRNP K. Both, hnRNP K and RBM42, are components of stress granules (SGs). Under nonstress conditions, RBM42 predominantly localizes within the nucleus and co-localizes with hnRNP K. Under stress conditions, hnRNP K and RBM42 form cytoplasmic foci where the SG marker TIAR localizes, and may play a role in the maintenance of cellular ATP level by protecting their target mRNAs. RBM42 contains an RNA recognition motif (RRM), also termed RBD (RNA binding domain) or RNP (ribonucleoprotein domain). . Length = 83

>gnl|CDD|241063 cd12619, RRM2_PUB1, RNA recognition motif 2 in yeast nuclear and cytoplasmic polyadenylated RNA-binding protein PUB1 and similar proteins

 Score = 42.1 bits (99), Expect = 6e-06
 Identities = 16/30 (53%), Positives = 19/30 (63%)

Query: 141 LFCGDLGNEVNDDVLSKAFSRFPSFNMAKV 170
           +F GDL  EV D  L  AFS FPS + A+V
Sbjct: 2   IFVGDLSPEVTDATLFAAFSAFPSCSDARV 31

This subgroup corresponds to the RRM2 of yeast protein PUB1, also termed ARS consensus-binding protein ACBP-60, or poly uridylate-binding protein, or poly(U)-binding protein. PUB1 has been identified as both, a heterogeneous nuclear RNA-binding protein (hnRNP) and a cytoplasmic mRNA-binding protein (mRNP), which may be stably bound to a translationally inactive subpopulation of mRNAs within the cytoplasm. It is distributed in both, the nucleus and the cytoplasm, and binds to poly(A)+ RNA (mRNA or pre-mRNA). Although it is one of the major cellular proteins cross-linked by UV light to polyadenylated RNAs in vivo, PUB1 is nonessential for cell growth in yeast. PUB1 also binds to T-rich single stranded DNA (ssDNA). However, there is no strong evidence implicating PUB1 in the mechanism of DNA replication. PUB1 contains three RNA recognition motifs (RRMs), also termed RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains), and a GAR motif (glycine and arginine rich stretch) that is located between RRM2 and RRM3. . Length = 75

>gnl|CDD|241056 cd12612, RRM2_SECp43, RNA recognition motif 2 in tRNA selenocysteine-associated protein 1 (SECp43)

 Score = 38.4 bits (90), Expect = 1e-04
 Identities = 16/34 (47%), Positives = 22/34 (64%), Gaps = 1/34 (2%)

Query: 138 DYRLFCGDLGNEVNDDVLSKAFS-RFPSFNMAKV 170
           ++ LF GDL  +V+D  L + FS R+PS   AKV
Sbjct: 1   EFSLFVGDLTPDVDDYQLYEFFSKRYPSCKGAKV 34

This subgroup corresponds to the RRM2 of SECp43, an RNA-binding protein associated specifically with eukaryotic selenocysteine tRNA [tRNA(Sec)]. It may play an adaptor role in the mechanism of selenocysteine insertion. SECp43 is located primarily in the nucleus and contains two N-terminal RNA recognition motifs (RRMs), also termed RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains), and a C-terminal polar/acidic region. . Length = 82

>gnl|CDD|240791 cd12345, RRM2_SECp43_like, RNA recognition motif 2 in tRNA selenocysteine-associated protein 1 (SECp43) and similar proteins

 Score = 34.6 bits (80), Expect = 0.003
 Identities = 15/34 (44%), Positives = 22/34 (64%), Gaps = 1/34 (2%)

Query: 138 DYRLFCGDLGNEVNDDVLSKAF-SRFPSFNMAKV 170
           D+ +F GDL  +V D +L + F +R+PS   AKV
Sbjct: 1   DHSIFVGDLAPDVTDYMLQETFRARYPSVRGAKV 34

This subfamily corresponds to the RRM2 in tRNA selenocysteine-associated protein 1 (SECp43), yeast negative growth regulatory protein NGR1 (RBP1), yeast protein NAM8, and similar proteins. SECp43 is an RNA-binding protein associated specifically with eukaryotic selenocysteine tRNA [tRNA(Sec)]. It may play an adaptor role in the mechanism of selenocysteine insertion. SECp43 is located primarily in the nucleus and contains two N-terminal RNA recognition motifs (RRMs), also termed RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains), and a C-terminal polar/acidic region. Yeast proteins, NGR1 and NAM8, show high sequence similarity with SECp43. NGR1 is a putative glucose-repressible protein that binds both RNA and single-stranded DNA (ssDNA). It may function in regulating cell growth in early log phase, possibly through its participation in RNA metabolism. NGR1 contains three RRMs, two of which are followed by a glutamine-rich stretch that may be involved in transcriptional activity. In addition, NGR1 has an asparagine-rich region near the C-terminus which also harbors a methionine-rich region. NAM8 is a putative RNA-binding protein that acts as a suppressor of mitochondrial splicing deficiencies when overexpressed in yeast. It may be a non-essential component of the mitochondrial splicing machinery. NAM8 also contains three RRMs. . Length = 80

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	175
KOG0226	290	consensus RNA-binding proteins [General function p	99.87
TIGR01661	352	ELAV_HUD_SF ELAV/HuD family splicing factor. These	98.41
KOG0148	321	consensus Apoptosis-promoting RNA-binding protein	98.39
PF00076	70	RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or	98.37
PLN03134	144	glycine-rich RNA-binding protein 4; Provisional	98.28
COG0724	306	RNA-binding proteins (RRM domain) [General functio	98.21
TIGR01659	346	sex-lethal sex-lethal family splicing factor. This	98.13
TIGR01648	578	hnRNP-R-Q heterogeneous nuclear ribonucleoprotein	98.08
TIGR01659	346	sex-lethal sex-lethal family splicing factor. This	97.89
smart00362	72	RRM_2 RNA recognition motif.	97.77
TIGR01628	562	PABP-1234 polyadenylate binding protein, human typ	97.75
PF14259	70	RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or	97.75
TIGR01645	612	half-pint poly-U binding splicing factor, half-pin	97.72
TIGR01622	457	SF-CC1 splicing factor, CC1-like family. A homolog	97.71
TIGR01645	612	half-pint poly-U binding splicing factor, half-pin	97.67
TIGR01649	481	hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor	97.65
TIGR01642	509	U2AF_lg U2 snRNP auxilliary factor, large subunit,	97.62
TIGR01628	562	PABP-1234 polyadenylate binding protein, human typ	97.57
KOG0226	290	consensus RNA-binding proteins [General function p	97.53
TIGR01622	457	SF-CC1 splicing factor, CC1-like family. A homolog	97.52
KOG0145	360	consensus RNA-binding protein ELAV/HU (RRM superfa	97.5
cd00590	74	RRM RRM (RNA recognition motif), also known as RBD	97.45
TIGR01648	578	hnRNP-R-Q heterogeneous nuclear ribonucleoprotein	97.41
KOG0126	219	consensus Predicted RNA-binding protein (RRM super	97.34
TIGR01661	352	ELAV_HUD_SF ELAV/HuD family splicing factor. These	97.29
TIGR01649	481	hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor	97.23
smart00360	71	RRM RNA recognition motif.	97.13
KOG0113	335	consensus U1 small nuclear ribonucleoprotein (RRM	97.06
KOG0148	321	consensus Apoptosis-promoting RNA-binding protein	97.05
KOG0127	678	consensus Nucleolar protein fibrillarin NOP77 (RRM	97.02
KOG0125	376	consensus Ataxin 2-binding protein (RRM superfamil	96.97
KOG0117	506	consensus Heterogeneous nuclear ribonucleoprotein	96.82
KOG0121	153	consensus Nuclear cap-binding protein complex, sub	96.82
KOG0123	369	consensus Polyadenylate-binding protein (RRM super	96.77
KOG0144	510	consensus RNA-binding protein CUGBP1/BRUNO (RRM su	96.73
KOG0114	124	consensus Predicted RNA-binding protein (RRM super	96.54
KOG0144	510	consensus RNA-binding protein CUGBP1/BRUNO (RRM su	96.37
KOG0109	346	consensus RNA-binding protein LARK, contains RRM a	96.32
KOG4205	311	consensus RNA-binding protein musashi/mRNA cleavag	96.15
KOG0131	203	consensus Splicing factor 3b, subunit 4 [RNA proce	96.11
KOG0151	877	consensus Predicted splicing regulator, contains R	96.07
KOG0122	270	consensus Translation initiation factor 3, subunit	96.04
TIGR01642	509	U2AF_lg U2 snRNP auxilliary factor, large subunit,	95.83
KOG1457	284	consensus RNA binding protein (contains RRM repeat	95.65
KOG0117	506	consensus Heterogeneous nuclear ribonucleoprotein	95.6
KOG4661	940	consensus Hsp27-ERE-TATA-binding protein/Scaffold	95.17
KOG0116	419	consensus RasGAP SH3 binding protein rasputin, con	95.1
KOG0153	377	consensus Predicted RNA-binding protein (RRM super	94.97
KOG0132	894	consensus RNA polymerase II C-terminal domain-bind	94.82
KOG0533	243	consensus RRM motif-containing protein [RNA proces	94.79
KOG0146	371	consensus RNA-binding protein ETR-3 (RRM superfami	94.62
KOG0124	544	consensus Polypyrimidine tract-binding protein PUF	94.35
KOG0415	479	consensus Predicted peptidyl prolyl cis-trans isom	94.12
KOG0147	549	consensus Transcriptional coactivator CAPER (RRM s	93.92
KOG0129	520	consensus Predicted RNA-binding protein (RRM super	93.12
KOG0124	544	consensus Polypyrimidine tract-binding protein PUF	92.58
KOG0130	170	consensus RNA-binding protein RBM8/Tsunagi (RRM su	91.85
KOG0145	360	consensus RNA-binding protein ELAV/HU (RRM superfa	91.7
KOG4660	549	consensus Protein Mei2, essential for commitment t	91.11
KOG0123	369	consensus Polyadenylate-binding protein (RRM super	90.87
KOG1548	382	consensus Transcription elongation factor TAT-SF1	90.71
KOG1855	484	consensus Predicted RNA-binding protein [General f	89.09
KOG0129	520	consensus Predicted RNA-binding protein (RRM super	85.21
KOG4210	285	consensus Nuclear localization sequence binding pr	83.39
KOG0127	678	consensus Nucleolar protein fibrillarin NOP77 (RRM	83.33
KOG0115	275	consensus RNA-binding protein p54nrb (RRM superfam	82.38
PF13893	56	RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or	81.62
KOG4849	498	consensus mRNA cleavage factor I subunit/CPSF subu	80.67
KOG0110	725	consensus RNA-binding protein (RRM superfamily) [G	80.56

>KOG0226 consensus RNA-binding proteins [General function prediction only]

Probab=99.87  E-value=2e-22  Score=175.66  Aligned_cols=108  Identities=51%  Similarity=0.752  Sum_probs=98.9

Q ss_pred             CCcCCchhhHHHHHHhhhccCCCCHHHHHHHHHHhhcchhhhhhhcCCCcc--ccccCCCcccCCCCCCCCCCCceeeec
Q 030532           67 APVYSLPQYHQAQQLFQRDAQTITPEALESVKAALASSDIEHKAETKKKSI--PRKAAGQTWEDPTLAEWPENDYRLFCG  144 (175)
Q Consensus        67 ~~~y~~~~~~qa~~~~q~~~~~~~peal~~v~aa~as~~~~~~~~~k~k~~--~R~a~G~~WeDptL~Ew~~ndfrIFVG  144 (175)
                      +.+|...+...+.++++++.+.|.+++++.+++..+.....+..++||...  +|.++|++||||+|.||+.+|||||||
T Consensus       117 ~~~f~~~p~L~ktk~v~~~p~~~~~~~~~~~k~s~a~~k~~~~~~~Kki~~~~VR~a~gtswedPsl~ew~~~DfRIfcg  196 (290)
T KOG0226|consen  117 PVVFSEYPSLVKTKLVRDRPQPIRPEAFESFKASDALLKAETEKEKKKIGKPPVRLAAGTSWEDPSLAEWDEDDFRIFCG  196 (290)
T ss_pred             hhhhccchhhhhhhhhhcCCCccCcccccCcchhhhhhhhccccccccccCcceeeccccccCCcccccCccccceeecc
Confidence            778888888889999999999999999999999988888777766555444  699999999999999999999999999


Q ss_pred             CCCCCCCHHHHHHHhhcCCCcceeEEeecC
Q 030532          145 DLGNEVNDDVLSKAFSRFPSFNMAKVSFCF  174 (175)
Q Consensus       145 NLs~dVTDe~L~~aFskYGSV~~AKVV~D~  174 (175)
                      ||++||+|+.|.++|.+|.++.++|||.|-
T Consensus       197 dlgNevnd~vl~raf~Kfpsf~~akviRdk  226 (290)
T KOG0226|consen  197 DLGNEVNDDVLARAFKKFPSFQKAKVIRDK  226 (290)
T ss_pred             cccccccHHHHHHHHHhccchhhccccccc
Confidence            999999999999999999999999999984

>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor

Probab=98.41  E-value=4.4e-07  Score=76.17  Aligned_cols=40  Identities=20%  Similarity=0.328  Sum_probs=36.6

Q ss_pred             CCCCceeeecCCCCCCCHHHHHHHhhcCCCcceeEEeecC
Q 030532          135 PENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVSFCF  174 (175)
Q Consensus       135 ~~ndfrIFVGNLs~dVTDe~L~~aFskYGSV~~AKVV~D~  174 (175)
                      +...++||||||++++++++|+++|++||.|.+++|+.|.
T Consensus       266 ~~~~~~lfV~NL~~~~~e~~L~~~F~~fG~v~~v~i~~d~  305 (352)
T TIGR01661       266 DGAGYCIFVYNLSPDTDETVLWQLFGPFGAVQNVKIIRDL  305 (352)
T ss_pred             CCCCcEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeEcC
Confidence            3445689999999999999999999999999999999985

These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).

>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]

Probab=98.39  E-value=2.4e-07  Score=82.60  Aligned_cols=62  Identities=23%  Similarity=0.368  Sum_probs=48.4

Q ss_pred             CCCccccccCCCcccCCCC---CCCCCCCceeeecCCCCCCCHHHHHHHhhcCCCcceeEEeecC
Q 030532          113 KKKSIPRKAAGQTWEDPTL---AEWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVSFCF  174 (175)
Q Consensus       113 k~k~~~R~a~G~~WeDptL---~Ew~~ndfrIFVGNLs~dVTDe~L~~aFskYGSV~~AKVV~D~  174 (175)
                      ++.+++++.=+-.|....-   ..-...||.+|||||+.+++-++|+++|.+||+|++||||+|+
T Consensus        34 ~~~k~i~~e~~v~wa~~p~nQsk~t~~~hfhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~   98 (321)
T KOG0148|consen   34 TKTKVIFDELKVNWATAPGNQSKPTSNQHFHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDM   98 (321)
T ss_pred             ccceeehhhhccccccCcccCCCCccccceeEEehhcchhcchHHHHHHhccccccccceEeecc
Confidence            4456677766666643221   1112349999999999999999999999999999999999997

>PF00076 RRM_1: RNA recognition motif

Probab=98.37  E-value=4.1e-07  Score=58.78  Aligned_cols=33  Identities=30%  Similarity=0.482  Sum_probs=31.6

Q ss_pred             eeecCCCCCCCHHHHHHHhhcCCCcceeEEeec
Q 030532          141 LFCGDLGNEVNDDVLSKAFSRFPSFNMAKVSFC  173 (175)
Q Consensus       141 IFVGNLs~dVTDe~L~~aFskYGSV~~AKVV~D  173 (175)
                      ||||||+.++|+++|+++|++||.|..++|+.|
T Consensus         1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~   33 (70)
T PF00076_consen    1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRN   33 (70)
T ss_dssp             EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEE
T ss_pred             cEEcCCCCcCCHHHHHHHHHHhhhccccccccc
Confidence            799999999999999999999999999999875

(a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....

>PLN03134 glycine-rich RNA-binding protein 4; Provisional

Probab=98.28  E-value=1e-06  Score=69.09  Aligned_cols=39  Identities=31%  Similarity=0.306  Sum_probs=36.0

Q ss_pred             CCCceeeecCCCCCCCHHHHHHHhhcCCCcceeEEeecC
Q 030532          136 ENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVSFCF  174 (175)
Q Consensus       136 ~ndfrIFVGNLs~dVTDe~L~~aFskYGSV~~AKVV~D~  174 (175)
                      ....+||||||++++||++|+++|++||.|.+++|++|.
T Consensus        32 ~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~   70 (144)
T PLN03134         32 LMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDR   70 (144)
T ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecC
Confidence            345689999999999999999999999999999999885

>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]

Probab=98.21  E-value=3.2e-06  Score=63.15  Aligned_cols=37  Identities=22%  Similarity=0.389  Sum_probs=35.3

Q ss_pred             CceeeecCCCCCCCHHHHHHHhhcCCCcceeEEeecC
Q 030532          138 DYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVSFCF  174 (175)
Q Consensus       138 dfrIFVGNLs~dVTDe~L~~aFskYGSV~~AKVV~D~  174 (175)
                      .++||||||++++|+++|.++|.+||.+..++|+.|.
T Consensus       115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~  151 (306)
T COG0724         115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDR  151 (306)
T ss_pred             CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeecc
Confidence            6999999999999999999999999999999999884

>TIGR01659 sex-lethal sex-lethal family splicing factor

Probab=98.13  E-value=2.8e-06  Score=75.32  Aligned_cols=39  Identities=15%  Similarity=0.241  Sum_probs=36.6

Q ss_pred             CCCceeeecCCCCCCCHHHHHHHhhcCCCcceeEEeecC
Q 030532          136 ENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVSFCF  174 (175)
Q Consensus       136 ~ndfrIFVGNLs~dVTDe~L~~aFskYGSV~~AKVV~D~  174 (175)
                      ....+||||||++++||++|+++|+.||.|.+++|+.|.
T Consensus       105 ~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~  143 (346)
T TIGR01659       105 NSGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDY  143 (346)
T ss_pred             CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecC
Confidence            467899999999999999999999999999999999884

This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).

>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family

Probab=98.08  E-value=7.3e-06  Score=77.86  Aligned_cols=47  Identities=17%  Similarity=0.405  Sum_probs=40.1

Q ss_pred             CcccCCCCCCCCCCCceeeecCCCCCCCHHHHHHHhhcCCCcceeEEeecC
Q 030532          124 QTWEDPTLAEWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVSFCF  174 (175)
Q Consensus       124 ~~WeDptL~Ew~~ndfrIFVGNLs~dVTDe~L~~aFskYGSV~~AKVV~D~  174 (175)
                      ..|+...    +....+||||||+.+++|++|+++|++||.|.++||++|.
T Consensus        48 ~~~~~~~----p~~~~~lFVgnLp~~~tEd~L~~~F~~~G~I~~vrl~~D~   94 (578)
T TIGR01648        48 PGWSGVQ----PGRGCEVFVGKIPRDLYEDELVPLFEKAGPIYELRLMMDF   94 (578)
T ss_pred             CcccCCC----CCCCCEEEeCCCCCCCCHHHHHHHHHhhCCEEEEEEEECC
Confidence            4575433    3356899999999999999999999999999999999985

Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.

>TIGR01659 sex-lethal sex-lethal family splicing factor

Probab=97.89  E-value=1.3e-05  Score=71.21  Aligned_cols=38  Identities=18%  Similarity=0.311  Sum_probs=35.5

Q ss_pred             CCceeeecCCCCCCCHHHHHHHhhcCCCcceeEEeecC
Q 030532          137 NDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVSFCF  174 (175)
Q Consensus       137 ndfrIFVGNLs~dVTDe~L~~aFskYGSV~~AKVV~D~  174 (175)
                      .+.+|||+||+.++||++|+++|++||.|..++|+.|.
T Consensus       192 ~~~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~d~  229 (346)
T TIGR01659       192 KDTNLYVTNLPRTITDDQLDTIFGKYGQIVQKNILRDK  229 (346)
T ss_pred             ccceeEEeCCCCcccHHHHHHHHHhcCCEEEEEEeecC
Confidence            46789999999999999999999999999999999884

This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).

>smart00362 RRM_2 RNA recognition motif

Probab=97.77  E-value=4.1e-05  Score=47.67  Aligned_cols=34  Identities=29%  Similarity=0.518  Sum_probs=31.7

Q ss_pred             eeeecCCCCCCCHHHHHHHhhcCCCcceeEEeec
Q 030532          140 RLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVSFC  173 (175)
Q Consensus       140 rIFVGNLs~dVTDe~L~~aFskYGSV~~AKVV~D  173 (175)
                      +|||+||+.++++++|.++|.+||.|...+++.+
T Consensus         1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~   34 (72)
T smart00362        1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKD   34 (72)
T ss_pred             CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecC
Confidence            5899999999999999999999999999888765

>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family

Probab=97.75  E-value=3.4e-05  Score=70.05  Aligned_cols=38  Identities=26%  Similarity=0.350  Sum_probs=35.3

Q ss_pred             CCceeeecCCCCCCCHHHHHHHhhcCCCcceeEEeecC
Q 030532          137 NDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVSFCF  174 (175)
Q Consensus       137 ndfrIFVGNLs~dVTDe~L~~aFskYGSV~~AKVV~D~  174 (175)
                      ...+||||||+.++||++|+++|++||.|.+++|+.|.
T Consensus       284 ~~~~l~V~nl~~~~~~~~L~~~F~~~G~i~~~~i~~d~  321 (562)
T TIGR01628       284 QGVNLYVKNLDDTVTDEKLRELFSECGEITSAKVMLDE  321 (562)
T ss_pred             CCCEEEEeCCCCccCHHHHHHHHHhcCCeEEEEEEECC
Confidence            45679999999999999999999999999999999884

There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.

>PF14259 RRM_6: RNA recognition motif (a

Probab=97.75  E-value=3.2e-05  Score=51.16  Aligned_cols=33  Identities=18%  Similarity=0.329  Sum_probs=29.0

Q ss_pred             eeecCCCCCCCHHHHHHHhhcCCCcceeEEeec
Q 030532          141 LFCGDLGNEVNDDVLSKAFSRFPSFNMAKVSFC  173 (175)
Q Consensus       141 IFVGNLs~dVTDe~L~~aFskYGSV~~AKVV~D  173 (175)
                      |||+||++++++++|+++|+.||.|...+++.+
T Consensus         1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~   33 (70)
T PF14259_consen    1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKN   33 (70)
T ss_dssp             EEEESSTTT--HHHHHHHCTTSSBEEEEEEEES
T ss_pred             CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEee
Confidence            799999999999999999999999999888775

k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....

>TIGR01645 half-pint poly-U binding splicing factor, half-pint family

Probab=97.72  E-value=3.8e-05  Score=73.63  Aligned_cols=38  Identities=8%  Similarity=0.215  Sum_probs=35.6

Q ss_pred             CCceeeecCCCCCCCHHHHHHHhhcCCCcceeEEeecC
Q 030532          137 NDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVSFCF  174 (175)
Q Consensus       137 ndfrIFVGNLs~dVTDe~L~~aFskYGSV~~AKVV~D~  174 (175)
                      ...+||||||+.++++++|+++|++||.|.+++|+.|.
T Consensus       203 ~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~  240 (612)
T TIGR01645       203 KFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAP  240 (612)
T ss_pred             ccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecC
Confidence            45799999999999999999999999999999999885

In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.

>TIGR01622 SF-CC1 splicing factor, CC1-like family

Probab=97.71  E-value=5.5e-05  Score=66.27  Aligned_cols=39  Identities=15%  Similarity=0.106  Sum_probs=35.8

Q ss_pred             CCCceeeecCCCCCCCHHHHHHHhhcCCCcceeEEeecC
Q 030532          136 ENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVSFCF  174 (175)
Q Consensus       136 ~ndfrIFVGNLs~dVTDe~L~~aFskYGSV~~AKVV~D~  174 (175)
                      ....+||||||+.++++++|.++|++||.|..++|+.|.
T Consensus        87 ~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~d~  125 (457)
T TIGR01622        87 RDDRTVFVLQLALKARERDLYEFFSKVGKVRDVQCIKDR  125 (457)
T ss_pred             cCCcEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeecC
Confidence            346689999999999999999999999999999999873

A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.

>TIGR01645 half-pint poly-U binding splicing factor, half-pint family

Probab=97.67  E-value=4.4e-05  Score=73.23  Aligned_cols=38  Identities=21%  Similarity=0.409  Sum_probs=35.4

Q ss_pred             CCceeeecCCCCCCCHHHHHHHhhcCCCcceeEEeecC
Q 030532          137 NDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVSFCF  174 (175)
Q Consensus       137 ndfrIFVGNLs~dVTDe~L~~aFskYGSV~~AKVV~D~  174 (175)
                      ...+||||||+++++|++|+++|++||.|.+++|++|.
T Consensus       106 ~~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I~~D~  143 (612)
T TIGR01645       106 IMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDP  143 (612)
T ss_pred             CCCEEEEcCCCCCCCHHHHHHHHHccCCEEEEEEeecC
Confidence            34689999999999999999999999999999999984

In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.

>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family

Probab=97.65  E-value=5.9e-05  Score=68.34  Aligned_cols=37  Identities=22%  Similarity=0.174  Sum_probs=34.2

Q ss_pred             CCceeeecCCCC-CCCHHHHHHHhhcCCCcceeEEeec
Q 030532          137 NDYRLFCGDLGN-EVNDDVLSKAFSRFPSFNMAKVSFC  173 (175)
Q Consensus       137 ndfrIFVGNLs~-dVTDe~L~~aFskYGSV~~AKVV~D  173 (175)
                      ....||||||++ .+|+++|+++|+.||.|.++||+.|
T Consensus       274 ~~~~l~v~nL~~~~vt~~~L~~lF~~yG~V~~vki~~~  311 (481)
T TIGR01649       274 PGSVLMVSGLHQEKVNCDRLFNLFCVYGNVERVKFMKN  311 (481)
T ss_pred             CCCEEEEeCCCCCCCCHHHHHHHHHhcCCeEEEEEEeC
Confidence            456899999998 6999999999999999999999876

Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).

>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor

Probab=97.62  E-value=7e-05  Score=66.33  Aligned_cols=37  Identities=14%  Similarity=0.260  Sum_probs=34.6

Q ss_pred             CceeeecCCCCCCCHHHHHHHhhcCCCcceeEEeecC
Q 030532          138 DYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVSFCF  174 (175)
Q Consensus       138 dfrIFVGNLs~dVTDe~L~~aFskYGSV~~AKVV~D~  174 (175)
                      ..+||||||++.+|+++|.++|+.||.|..++|+.|.
T Consensus       295 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~  331 (509)
T TIGR01642       295 KDRIYIGNLPLYLGEDQIKELLESFGDLKAFNLIKDI  331 (509)
T ss_pred             CCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecC
Confidence            4689999999999999999999999999999999874

Members of this subfamily are found in plants, metazoa and fungi.

>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family

Probab=97.57  E-value=8.9e-05  Score=67.38  Aligned_cols=38  Identities=24%  Similarity=0.301  Sum_probs=35.0

Q ss_pred             CCceeeecCCCCCCCHHHHHHHhhcCCCcceeEEeecC
Q 030532          137 NDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVSFCF  174 (175)
Q Consensus       137 ndfrIFVGNLs~dVTDe~L~~aFskYGSV~~AKVV~D~  174 (175)
                      ...+|||+||+.++|+++|+++|++||.|.+++|++|.
T Consensus        87 ~~~~vfV~nLp~~~~~~~L~~~F~~~G~i~~~~i~~~~  124 (562)
T TIGR01628        87 GVGNIFVKNLDKSVDNKALFDTFSKFGNILSCKVATDE  124 (562)
T ss_pred             CCCceEEcCCCccCCHHHHHHHHHhcCCcceeEeeecC
Confidence            34579999999999999999999999999999999874

There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.

>KOG0226 consensus RNA-binding proteins [General function prediction only]

Probab=97.53  E-value=2.6e-05  Score=69.22  Aligned_cols=61  Identities=33%  Similarity=0.483  Sum_probs=55.3

Q ss_pred             CCCccccccCCCcccCCCCCCCCCCCceeeecCCCCCCCHHH-H--HHHhhcCCCcceeEEeec
Q 030532          113 KKKSIPRKAAGQTWEDPTLAEWPENDYRLFCGDLGNEVNDDV-L--SKAFSRFPSFNMAKVSFC  173 (175)
Q Consensus       113 k~k~~~R~a~G~~WeDptL~Ew~~ndfrIFVGNLs~dVTDe~-L--~~aFskYGSV~~AKVV~D  173 (175)
                      -+-++.|+.++..|+||++++|++++|+.|+|+++.+|.++- |  ..+|+.|.++.+-+++.|
T Consensus        71 v~tav~~~s~~a~~~~Pt~l~~~P~vf~p~~~~~g~~v~pep~lp~~~~f~~~p~L~ktk~v~~  134 (290)
T KOG0226|consen   71 VKTAVGRKSAPAVWADPTLLAPAPAVFRPFQSNAGATVNPEPPLPLPVVFSEYPSLVKTKLVRD  134 (290)
T ss_pred             hhhhccccccccccCCCccCCCCcccccccccccccccCCCCCCcchhhhccchhhhhhhhhhc
Confidence            346679999999999999999999999999999999999987 5  899999999988888765

>TIGR01622 SF-CC1 splicing factor, CC1-like family

Probab=97.52  E-value=0.00012  Score=64.13  Aligned_cols=38  Identities=18%  Similarity=0.301  Sum_probs=35.2

Q ss_pred             CCceeeecCCCCCCCHHHHHHHhhcCCCcceeEEeecC
Q 030532          137 NDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVSFCF  174 (175)
Q Consensus       137 ndfrIFVGNLs~dVTDe~L~~aFskYGSV~~AKVV~D~  174 (175)
                      +..+||||||+.++|+++|.++|+.||.|..++|+.|.
T Consensus       185 ~~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~  222 (457)
T TIGR01622       185 NFLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDP  222 (457)
T ss_pred             CCCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcC
Confidence            46789999999999999999999999999999998774

A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.

>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]

Probab=97.50  E-value=0.00012  Score=65.88  Aligned_cols=43  Identities=23%  Similarity=0.370  Sum_probs=39.0

Q ss_pred             CCCCCCceeeecCCCCCCCHHHHHHHhhcCCCcceeEEeecCC
Q 030532          133 EWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVSFCFT  175 (175)
Q Consensus       133 Ew~~ndfrIFVGNLs~dVTDe~L~~aFskYGSV~~AKVV~D~~  175 (175)
                      -.+..-+.|||=||+.|.+|..|.++|+.||.|..+|||.|+|
T Consensus       273 ~~~~~g~ciFvYNLspd~de~~LWQlFgpFGAv~nVKvirD~t  315 (360)
T KOG0145|consen  273 GGPGGGWCIFVYNLSPDADESILWQLFGPFGAVTNVKVIRDFT  315 (360)
T ss_pred             CCCCCeeEEEEEecCCCchHhHHHHHhCcccceeeEEEEecCC
Confidence            3345567899999999999999999999999999999999986

>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability

Probab=97.45  E-value=0.00022  Score=44.58  Aligned_cols=35  Identities=26%  Similarity=0.441  Sum_probs=32.0

Q ss_pred             eeeecCCCCCCCHHHHHHHhhcCCCcceeEEeecC
Q 030532          140 RLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVSFCF  174 (175)
Q Consensus       140 rIFVGNLs~dVTDe~L~~aFskYGSV~~AKVV~D~  174 (175)
                      +|||+||+.++++++|.+.|..||.+...++..+.
T Consensus         1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~   35 (74)
T cd00590           1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDK   35 (74)
T ss_pred             CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCC
Confidence            58999999999999999999999999998887753

This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).

>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family

Probab=97.41  E-value=0.00018  Score=68.54  Aligned_cols=37  Identities=19%  Similarity=0.299  Sum_probs=34.0

Q ss_pred             CceeeecCCCCCCCHHHHHHHhhcC--CCcceeEEeecC
Q 030532          138 DYRLFCGDLGNEVNDDVLSKAFSRF--PSFNMAKVSFCF  174 (175)
Q Consensus       138 dfrIFVGNLs~dVTDe~L~~aFskY--GSV~~AKVV~D~  174 (175)
                      ..+||||||++++||++|+++|++|  |.|.+++++.|+
T Consensus       233 ~k~LfVgNL~~~~tee~L~~~F~~f~~G~I~rV~~~rgf  271 (578)
T TIGR01648       233 VKILYVRNLMTTTTEEIIEKSFSEFKPGKVERVKKIRDY  271 (578)
T ss_pred             ccEEEEeCCCCCCCHHHHHHHHHhcCCCceEEEEeecCe
Confidence            3569999999999999999999999  999999998774

Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.

>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]

Probab=97.34  E-value=3.8e-05  Score=65.84  Aligned_cols=38  Identities=13%  Similarity=0.155  Sum_probs=34.9

Q ss_pred             CCceeeecCCCCCCCHHHHHHHhhcCCCcceeEEeecC
Q 030532          137 NDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVSFCF  174 (175)
Q Consensus       137 ndfrIFVGNLs~dVTDe~L~~aFskYGSV~~AKVV~D~  174 (175)
                      +..=||||||+++.||.+|.-+|++||.++++.+|.|-
T Consensus        34 dsA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk   71 (219)
T KOG0126|consen   34 DSAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDK   71 (219)
T ss_pred             cceEEEECCCcccccCCcEEEEeeccCceEEEEEEecC
Confidence            44569999999999999999999999999999999984

>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor

Probab=97.29  E-value=0.0003  Score=59.22  Aligned_cols=38  Identities=16%  Similarity=0.211  Sum_probs=34.9

Q ss_pred             CCceeeecCCCCCCCHHHHHHHhhcCCCcceeEEeecC
Q 030532          137 NDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVSFCF  174 (175)
Q Consensus       137 ndfrIFVGNLs~dVTDe~L~~aFskYGSV~~AKVV~D~  174 (175)
                      ...+||||||+.++++++|+++|++||.|..++|+.|.
T Consensus        88 ~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~  125 (352)
T TIGR01661        88 KGANLYVSGLPKTMTQHELESIFSPFGQIITSRILSDN  125 (352)
T ss_pred             ccceEEECCccccCCHHHHHHHHhccCCEEEEEEEecC
Confidence            45689999999999999999999999999999998874

These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).

>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family

Probab=97.23  E-value=0.00034  Score=63.46  Aligned_cols=36  Identities=14%  Similarity=0.044  Sum_probs=33.4

Q ss_pred             CceeeecCCCCCCCHHHHHHHhhcCCCcceeEEeec
Q 030532          138 DYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVSFC  173 (175)
Q Consensus       138 dfrIFVGNLs~dVTDe~L~~aFskYGSV~~AKVV~D  173 (175)
                      -.+|||+||.+.+|+++|+++|+.||.|.+++|+.|
T Consensus        96 ~~~v~v~nl~~~vt~~~L~~~F~~~G~V~~v~i~~~  131 (481)
T TIGR01649        96 VLRVIVENPMYPITLDVLYQIFNPYGKVLRIVTFTK  131 (481)
T ss_pred             eEEEEEcCCCCCCCHHHHHHHHhccCCEEEEEEEec
Confidence            358999999999999999999999999999998766

Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).

>smart00360 RRM RNA recognition motif

Probab=97.13  E-value=0.00058  Score=42.15  Aligned_cols=32  Identities=22%  Similarity=0.376  Sum_probs=29.2

Q ss_pred             ecCCCCCCCHHHHHHHhhcCCCcceeEEeecC
Q 030532          143 CGDLGNEVNDDVLSKAFSRFPSFNMAKVSFCF  174 (175)
Q Consensus       143 VGNLs~dVTDe~L~~aFskYGSV~~AKVV~D~  174 (175)
                      |+||+.++++++|+++|+.||.|..++|..+.
T Consensus         1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~   32 (71)
T smart00360        1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDK   32 (71)
T ss_pred             CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCC
Confidence            68999999999999999999999999887753

>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]

Probab=97.06  E-value=0.00092  Score=60.56  Aligned_cols=35  Identities=14%  Similarity=0.311  Sum_probs=33.6

Q ss_pred             eeeecCCCCCCCHHHHHHHhhcCCCcceeEEeecC
Q 030532          140 RLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVSFCF  174 (175)
Q Consensus       140 rIFVGNLs~dVTDe~L~~aFskYGSV~~AKVV~D~  174 (175)
                      +||||-|+++++|..|.+.|++||.|.+.+||.|.
T Consensus       103 TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~  137 (335)
T KOG0113|consen  103 TLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDK  137 (335)
T ss_pred             eeeeeeccccccHHHHHHHHHhcCcceeEEEeeec
Confidence            69999999999999999999999999999999983

>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]

Probab=97.05  E-value=0.00063  Score=61.19  Aligned_cols=41  Identities=15%  Similarity=0.345  Sum_probs=37.5

Q ss_pred             CCCCCceeeecCCCCCCCHHHHHHHhhcCCCcceeEEeecC
Q 030532          134 WPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVSFCF  174 (175)
Q Consensus       134 w~~ndfrIFVGNLs~dVTDe~L~~aFskYGSV~~AKVV~D~  174 (175)
                      -++++.++||||++.-.||++|++.|+.||.|.++||-.|.
T Consensus       160 ssp~NtsVY~G~I~~~lte~~mr~~Fs~fG~I~EVRvFk~q  200 (321)
T KOG0148|consen  160 SSPDNTSVYVGNIASGLTEDLMRQTFSPFGPIQEVRVFKDQ  200 (321)
T ss_pred             CCCCCceEEeCCcCccccHHHHHHhcccCCcceEEEEeccc
Confidence            35678899999999999999999999999999999998774

>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]

Probab=97.02  E-value=0.00077  Score=65.16  Aligned_cols=42  Identities=19%  Similarity=0.218  Sum_probs=37.6

Q ss_pred             CCCCCCceeeecCCCCCCCHHHHHHHhhcCCCcceeEEeecC
Q 030532          133 EWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVSFCF  174 (175)
Q Consensus       133 Ew~~ndfrIFVGNLs~dVTDe~L~~aFskYGSV~~AKVV~D~  174 (175)
                      |.......+||-||++|+|+++|...|++||+|..|+||.|.
T Consensus       287 en~~~~~tVFvRNL~fD~tEEel~~~fskFG~v~ya~iV~~k  328 (678)
T KOG0127|consen  287 ENITEGKTVFVRNLPFDTTEEELKEHFSKFGEVKYAIIVKDK  328 (678)
T ss_pred             ccccccceEEEecCCccccHHHHHHHHHhhccceeEEEEecc
Confidence            334456899999999999999999999999999999999885

>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]

Probab=96.97  E-value=0.00086  Score=61.44  Aligned_cols=44  Identities=18%  Similarity=0.218  Sum_probs=39.0

Q ss_pred             CCCCCCCCCceeeecCCCCCCCHHHHHHHhhcCCCcceeEEeec
Q 030532          130 TLAEWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVSFC  173 (175)
Q Consensus       130 tL~Ew~~ndfrIFVGNLs~dVTDe~L~~aFskYGSV~~AKVV~D  173 (175)
                      +-.+-...+-||+|.|+++.-.|.||+.+|.+||-|.++.||++
T Consensus        88 t~s~s~~~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfN  131 (376)
T KOG0125|consen   88 TNSSSKDTPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFN  131 (376)
T ss_pred             CcCCCCCCCceeEeecCCccccCccHHHHHHhhCceeeEEEEec
Confidence            33445567889999999999999999999999999999999986

>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]

Probab=96.82  E-value=0.0009  Score=63.21  Aligned_cols=51  Identities=20%  Similarity=0.477  Sum_probs=41.3

Q ss_pred             CcccCCCCCCCC-------CCCc----eeeecCCCCCCCHHHHHHHhhcCCCcceeEEeecC
Q 030532          124 QTWEDPTLAEWP-------ENDY----RLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVSFCF  174 (175)
Q Consensus       124 ~~WeDptL~Ew~-------~ndf----rIFVGNLs~dVTDe~L~~aFskYGSV~~AKVV~D~  174 (175)
                      +.|......+|-       ++.+    -|||-||..+||+|.|.++|++||.|.++|.+.|+
T Consensus       234 klwgn~~tVdWAep~~e~ded~ms~VKvLYVRNL~~~tTeE~lk~~F~~~G~veRVkk~rDY  295 (506)
T KOG0117|consen  234 KLWGNAITVDWAEPEEEPDEDTMSKVKVLYVRNLMESTTEETLKKLFNEFGKVERVKKPRDY  295 (506)
T ss_pred             eecCCcceeeccCcccCCChhhhhheeeeeeeccchhhhHHHHHHHHHhccceEEeecccce
Confidence            566555556662       2233    29999999999999999999999999999999885

>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]

Probab=96.82  E-value=0.00086  Score=55.07  Aligned_cols=35  Identities=11%  Similarity=0.277  Sum_probs=31.0

Q ss_pred             CCCceeeecCCCCCCCHHHHHHHhhcCCCcceeEE
Q 030532          136 ENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKV  170 (175)
Q Consensus       136 ~ndfrIFVGNLs~dVTDe~L~~aFskYGSV~~AKV  170 (175)
                      .....||||||++-++||.+.++|++.|.|.....
T Consensus        34 r~S~tvyVgNlSfyttEEqiyELFs~cG~irriiM   68 (153)
T KOG0121|consen   34 RKSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIM   68 (153)
T ss_pred             hhcceEEEeeeeeeecHHHHHHHHHhccchheeEe
Confidence            45678999999999999999999999999987543

>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]

Probab=96.77  E-value=0.0012  Score=59.41  Aligned_cols=34  Identities=24%  Similarity=0.350  Sum_probs=33.2

Q ss_pred             eeecCCCCCCCHHHHHHHhhcCCCcceeEEeecC
Q 030532          141 LFCGDLGNEVNDDVLSKAFSRFPSFNMAKVSFCF  174 (175)
Q Consensus       141 IFVGNLs~dVTDe~L~~aFskYGSV~~AKVV~D~  174 (175)
                      |||-||+.++|+..|.++|+.||.|.++||++|.
T Consensus        79 ~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~  112 (369)
T KOG0123|consen   79 VFIKNLDESIDNKSLYDTFSEFGNILSCKVATDE  112 (369)
T ss_pred             eeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcC
Confidence            9999999999999999999999999999999985

>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]

Probab=96.73  E-value=0.001  Score=62.71  Aligned_cols=39  Identities=13%  Similarity=0.238  Sum_probs=36.6

Q ss_pred             CCCceeeecCCCCCCCHHHHHHHhhcCCCcceeEEeecC
Q 030532          136 ENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVSFCF  174 (175)
Q Consensus       136 ~ndfrIFVGNLs~dVTDe~L~~aFskYGSV~~AKVV~D~  174 (175)
                      .+-.++|||-++...+|.+|+++|++||.|.++.|+.|-
T Consensus        32 ~~~vKlfVgqIprt~sE~dlr~lFe~yg~V~einl~kDk   70 (510)
T KOG0144|consen   32 GSAVKLFVGQIPRTASEKDLRELFEKYGNVYEINLIKDK   70 (510)
T ss_pred             chhhhheeccCCccccHHHHHHHHHHhCceeEEEeeccc
Confidence            567799999999999999999999999999999999984

>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]

Probab=96.54  E-value=0.0025  Score=50.86  Aligned_cols=32  Identities=9%  Similarity=0.347  Sum_probs=29.7

Q ss_pred             eeeecCCCCCCCHHHHHHHhhcCCCcceeEEe
Q 030532          140 RLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVS  171 (175)
Q Consensus       140 rIFVGNLs~dVTDe~L~~aFskYGSV~~AKVV  171 (175)
                      =|||-||++++|.|+..++|.+||.|...||=
T Consensus        20 iLyirNLp~~ITseemydlFGkyg~IrQIRiG   51 (124)
T KOG0114|consen   20 ILYIRNLPFKITSEEMYDLFGKYGTIRQIRIG   51 (124)
T ss_pred             eEEEecCCccccHHHHHHHhhcccceEEEEec
Confidence            48999999999999999999999999988863

>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]

Probab=96.37  E-value=0.0013  Score=62.16  Aligned_cols=39  Identities=21%  Similarity=0.316  Sum_probs=36.5

Q ss_pred             CCCceeeecCCCCCCCHHHHHHHhhcCCCcceeEEeecC
Q 030532          136 ENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVSFCF  174 (175)
Q Consensus       136 ~ndfrIFVGNLs~dVTDe~L~~aFskYGSV~~AKVV~D~  174 (175)
                      ..|.+||||-|+..+||.+++++|++||-|.++.|.+|.
T Consensus       122 ~~e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd~  160 (510)
T KOG0144|consen  122 VEERKLFVGMLSKQCTENEVREIFSRFGHIEDCYILRDP  160 (510)
T ss_pred             ccchhhhhhhccccccHHHHHHHHHhhCccchhhheecc
Confidence            458999999999999999999999999999999999874

>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]

Probab=96.32  E-value=0.0025  Score=57.88  Aligned_cols=39  Identities=10%  Similarity=0.280  Sum_probs=36.1

Q ss_pred             CCCceeeecCCCCCCCHHHHHHHhhcCCCcceeEEeecC
Q 030532          136 ENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVSFCF  174 (175)
Q Consensus       136 ~ndfrIFVGNLs~dVTDe~L~~aFskYGSV~~AKVV~D~  174 (175)
                      ....+||||||++..+.++|++.|.+||.|.+++|+.|.
T Consensus        76 k~stkl~vgNis~tctn~ElRa~fe~ygpviecdivkdy  114 (346)
T KOG0109|consen   76 KASTKLHVGNISPTCTNQELRAKFEKYGPVIECDIVKDY  114 (346)
T ss_pred             CCccccccCCCCccccCHHHhhhhcccCCceeeeeecce
Confidence            456789999999999999999999999999999999885

>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]

Probab=96.15  E-value=0.0072  Score=54.02  Aligned_cols=57  Identities=14%  Similarity=0.275  Sum_probs=43.2

Q ss_pred             cCCCccccccCCCcccCCCCCCCCCCCceeeecCCCCCCCHHHHHHHhhcCCCcceeEEeecCC
Q 030532          112 TKKKSIPRKAAGQTWEDPTLAEWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVSFCFT  175 (175)
Q Consensus       112 ~k~k~~~R~a~G~~WeDptL~Ew~~ndfrIFVGNLs~dVTDe~L~~aFskYGSV~~AKVV~D~~  175 (175)
                      -.++++-|+.....=.-       ..-..||||.|+.++++++|++.|.+||-|..+-+++|.+
T Consensus        78 e~k~av~r~~~~~~~~~-------~~tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~  134 (311)
T KOG4205|consen   78 EPKRAVSREDQTKVGRH-------LRTKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKT  134 (311)
T ss_pred             cceeccCcccccccccc-------cceeEEEecCcCCCCchHHHhhhhhccceeEeeEEeeccc
Confidence            34455566544433221       1566899999999999999999999999998998988863

>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]

Probab=96.11  E-value=0.0029  Score=54.15  Aligned_cols=37  Identities=30%  Similarity=0.415  Sum_probs=31.9

Q ss_pred             CCceeeecCCCCCCCHHHHHHHhhcCCCcce-eEEeec
Q 030532          137 NDYRLFCGDLGNEVNDDVLSKAFSRFPSFNM-AKVSFC  173 (175)
Q Consensus       137 ndfrIFVGNLs~dVTDe~L~~aFskYGSV~~-AKVV~D  173 (175)
                      ...+||||||..+|+|..|.++|+.||-|.+ -+|+.|
T Consensus        95 vganlfvgNLd~~vDe~~L~dtFsafG~l~~~P~i~rd  132 (203)
T KOG0131|consen   95 VGANLFVGNLDPEVDEKLLYDTFSAFGVLISPPKIMRD  132 (203)
T ss_pred             ccccccccccCcchhHHHHHHHHHhccccccCCccccc
Confidence            4489999999999999999999999999875 355555

>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]

Probab=96.07  E-value=0.0065  Score=60.37  Aligned_cols=43  Identities=21%  Similarity=0.421  Sum_probs=38.9

Q ss_pred             CCCCCCCceeeecCCCCCCCHHHHHHHhhcCCCcceeEEeecC
Q 030532          132 AEWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVSFCF  174 (175)
Q Consensus       132 ~Ew~~ndfrIFVGNLs~dVTDe~L~~aFskYGSV~~AKVV~D~  174 (175)
                      .+-|+...++|||||+..|+++.|...|.+||-|.++||+|-.
T Consensus       168 DdgDP~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpR  210 (877)
T KOG0151|consen  168 DDGDPQTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPR  210 (877)
T ss_pred             CCCCCcccceeeecCCccccHHHHHHHhcccCcccceeeeccc
Confidence            4447788899999999999999999999999999999999854

>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]

Probab=96.04  E-value=0.011  Score=52.44  Aligned_cols=38  Identities=13%  Similarity=0.208  Sum_probs=35.4

Q ss_pred             CCceeeecCCCCCCCHHHHHHHhhcCCCcceeEEeecC
Q 030532          137 NDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVSFCF  174 (175)
Q Consensus       137 ndfrIFVGNLs~dVTDe~L~~aFskYGSV~~AKVV~D~  174 (175)
                      ++..|-|.||+.+++|++|+++|.+||.|.++-|++|.
T Consensus       188 D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK  225 (270)
T KOG0122|consen  188 DEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDK  225 (270)
T ss_pred             ccceeEEecCccccChhHHHHHhhccCccceeEEEEcc
Confidence            56679999999999999999999999999999999885

>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor

Probab=95.83  E-value=0.011  Score=52.56  Aligned_cols=27  Identities=19%  Similarity=0.438  Sum_probs=24.0

Q ss_pred             CCCceeeecCCCCCCCHHHHHHHhhcC
Q 030532          136 ENDYRLFCGDLGNEVNDDVLSKAFSRF  162 (175)
Q Consensus       136 ~ndfrIFVGNLs~dVTDe~L~~aFskY  162 (175)
                      ...-+||||||++++|+++|.++|..|
T Consensus       173 ~~~r~lyVgnLp~~~t~~~l~~~F~~~  199 (509)
T TIGR01642       173 RQARRLYVGGIPPEFVEEAVVDFFNDL  199 (509)
T ss_pred             ccccEEEEeCCCCCCCHHHHHHHHHHH
Confidence            445689999999999999999999865

Members of this subfamily are found in plants, metazoa and fungi.

>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]

Probab=95.65  E-value=0.0073  Score=53.55  Aligned_cols=33  Identities=33%  Similarity=0.668  Sum_probs=29.9

Q ss_pred             CceeeecCCCCCCCHHHHHHHhhcCCCcceeEE
Q 030532          138 DYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKV  170 (175)
Q Consensus       138 dfrIFVGNLs~dVTDe~L~~aFskYGSV~~AKV  170 (175)
                      --.|||.||+.++|||+|+.+|++|.++...||
T Consensus       210 cstlfianl~~~~~ed~l~~~~~~~~gf~~l~~  242 (284)
T KOG1457|consen  210 CSTLFIANLGPNCTEDELKQLLSRYPGFHILKI  242 (284)
T ss_pred             hhhHhhhccCCCCCHHHHHHHHHhCCCceEEEE
Confidence            346999999999999999999999999987775

>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]

Probab=95.60  E-value=0.017  Score=54.92  Aligned_cols=37  Identities=16%  Similarity=0.277  Sum_probs=34.6

Q ss_pred             CceeeecCCCCCCCHHHHHHHhhcCCCcceeEEeecC
Q 030532          138 DYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVSFCF  174 (175)
Q Consensus       138 dfrIFVGNLs~dVTDe~L~~aFskYGSV~~AKVV~D~  174 (175)
                      -.-||||.|+.|+.||+|.-+|++-|.|-+.|+|+|.
T Consensus        83 G~EVfvGkIPrD~~EdeLvplfEkiG~I~elRLMmD~  119 (506)
T KOG0117|consen   83 GCEVFVGKIPRDVFEDELVPLFEKIGKIYELRLMMDP  119 (506)
T ss_pred             CceEEecCCCccccchhhHHHHHhccceeeEEEeecc
Confidence            3469999999999999999999999999999999993

>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]

Probab=95.17  E-value=0.013  Score=57.64  Aligned_cols=36  Identities=22%  Similarity=0.248  Sum_probs=33.7

Q ss_pred             CceeeecCCCCCCCHHHHHHHhhcCCCcceeEEeec
Q 030532          138 DYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVSFC  173 (175)
Q Consensus       138 dfrIFVGNLs~dVTDe~L~~aFskYGSV~~AKVV~D  173 (175)
                      --+|||.+|+.-+...+|..+|++||-|+.||||++
T Consensus       405 gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTN  440 (940)
T KOG4661|consen  405 GRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTN  440 (940)
T ss_pred             ccceeeeccccchhhhHHHHHHHHhcceeceeeeec
Confidence            346999999999999999999999999999999986

>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]

Probab=95.10  E-value=0.017  Score=53.63  Aligned_cols=32  Identities=16%  Similarity=0.358  Sum_probs=29.2

Q ss_pred             eeeecCCCCCCCHHHHHHHhhcCCCcceeEEe
Q 030532          140 RLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVS  171 (175)
Q Consensus       140 rIFVGNLs~dVTDe~L~~aFskYGSV~~AKVV  171 (175)
                      .|||+||+.++++++|.++|..||.|...+|-
T Consensus       290 ~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~  321 (419)
T KOG0116|consen  290 GIFVKNLPPDATPAELEEVFKQFGPIKEGGIQ  321 (419)
T ss_pred             ceEeecCCCCCCHHHHHHHHhhcccccccceE
Confidence            39999999999999999999999999876654

>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]

Probab=94.97  E-value=0.027  Score=51.97  Aligned_cols=40  Identities=20%  Similarity=0.344  Sum_probs=33.9

Q ss_pred             CCCCCCc---eeeecCCCCCCCHHHHHHHhhcCCCcceeEEee
Q 030532          133 EWPENDY---RLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVSF  172 (175)
Q Consensus       133 Ew~~ndf---rIFVGNLs~dVTDe~L~~aFskYGSV~~AKVV~  172 (175)
                      +|++.|-   .||||+|..+++|.+|++-|.+||++...+|+.
T Consensus       220 lepPeD~~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~  262 (377)
T KOG0153|consen  220 LEPPEDTSIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILP  262 (377)
T ss_pred             cCCCcccceeEEEecccccchhHHHHHHHHhhcCCeeeEEeec
Confidence            4555544   599999999999999999999999999877653

>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]

Probab=94.82  E-value=0.022  Score=57.05  Aligned_cols=33  Identities=18%  Similarity=0.336  Sum_probs=30.7

Q ss_pred             eeeecCCCCCCCHHHHHHHhhcCCCcceeEEee
Q 030532          140 RLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVSF  172 (175)
Q Consensus       140 rIFVGNLs~dVTDe~L~~aFskYGSV~~AKVV~  172 (175)
                      +||||.|+..|++.+|..+|+.||+|.++++|-
T Consensus       423 TLwvG~i~k~v~e~dL~~~feefGeiqSi~li~  455 (894)
T KOG0132|consen  423 TLWVGGIPKNVTEQDLANLFEEFGEIQSIILIP  455 (894)
T ss_pred             eeeeccccchhhHHHHHHHHHhcccceeEeecc
Confidence            499999999999999999999999999988764

>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]

Probab=94.79  E-value=0.033  Score=48.46  Aligned_cols=41  Identities=17%  Similarity=0.180  Sum_probs=35.0

Q ss_pred             CCCCCceeeecCCCCCCCHHHHHHHhhcCCCcceeEEeecC
Q 030532          134 WPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVSFCF  174 (175)
Q Consensus       134 w~~ndfrIFVGNLs~dVTDe~L~~aFskYGSV~~AKVV~D~  174 (175)
                      .+....+|.|.||+..|++++|.++|..||.+..+-|=+|.
T Consensus        79 ~~~~~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~  119 (243)
T KOG0533|consen   79 NETRSTKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDR  119 (243)
T ss_pred             cCCCcceeeeecCCcCcchHHHHHHHHHhccceEEeeccCC
Confidence            44556789999999999999999999999988887776654

>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]

Probab=94.62  E-value=0.029  Score=51.07  Aligned_cols=39  Identities=28%  Similarity=0.222  Sum_probs=36.9

Q ss_pred             CCCceeeecCCCCCCCHHHHHHHhhcCCCcceeEEeecC
Q 030532          136 ENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVSFCF  174 (175)
Q Consensus       136 ~ndfrIFVGNLs~dVTDe~L~~aFskYGSV~~AKVV~D~  174 (175)
                      ++-.+|||=.|+.|..|.+|..+|-.||.|.++||.+|.
T Consensus       283 PeGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFvDR  321 (371)
T KOG0146|consen  283 PEGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVDR  321 (371)
T ss_pred             CCcceEEEEeCchhhccHHHHHHhccccceeeeeeeehh
Confidence            467899999999999999999999999999999999985

>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]

Probab=94.35  E-value=0.019  Score=54.09  Aligned_cols=37  Identities=22%  Similarity=0.445  Sum_probs=34.7

Q ss_pred             CceeeecCCCCCCCHHHHHHHhhcCCCcceeEEeecC
Q 030532          138 DYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVSFCF  174 (175)
Q Consensus       138 dfrIFVGNLs~dVTDe~L~~aFskYGSV~~AKVV~D~  174 (175)
                      -.|+|||.++++..||.|+.+|..||.|++...-||+
T Consensus       113 McRvYVGSIsfEl~EDtiR~AF~PFGPIKSInMSWDp  149 (544)
T KOG0124|consen  113 MCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDP  149 (544)
T ss_pred             hHheeeeeeEEEechHHHHhhccCCCCcceeeccccc
Confidence            3589999999999999999999999999999998886

>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=94.12  E-value=0.038  Score=51.84  Aligned_cols=42  Identities=24%  Similarity=0.203  Sum_probs=38.1

Q ss_pred             CCCCCCceeeecCCCCCCCHHHHHHHhhcCCCcceeEEeecC
Q 030532          133 EWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVSFCF  174 (175)
Q Consensus       133 Ew~~ndfrIFVGNLs~dVTDe~L~~aFskYGSV~~AKVV~D~  174 (175)
                      +--+.+.-|||--|.+-+||++|.-+|++||.|.++.||.|.
T Consensus       234 d~~PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~  275 (479)
T KOG0415|consen  234 DVKPPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDR  275 (479)
T ss_pred             ccCCCcceEEEEecCCcccccchhhHHhhcccceeeeEEecc
Confidence            334677789999999999999999999999999999999985

>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]

Probab=93.92  E-value=0.028  Score=54.01  Aligned_cols=37  Identities=22%  Similarity=0.395  Sum_probs=34.2

Q ss_pred             Cce-eeecCCCCCCCHHHHHHHhhcCCCcceeEEeecC
Q 030532          138 DYR-LFCGDLGNEVNDDVLSKAFSRFPSFNMAKVSFCF  174 (175)
Q Consensus       138 dfr-IFVGNLs~dVTDe~L~~aFskYGSV~~AKVV~D~  174 (175)
                      .|+ ||||||.++.+|++|+.+|+.||.|..+.+.+|.
T Consensus       277 p~~rl~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~  314 (549)
T KOG0147|consen  277 PMRRLYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDS  314 (549)
T ss_pred             chhhhhhcccccCchHHHHhhhccCcccceeeeecccc
Confidence            455 9999999999999999999999999999998884

>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]

Probab=93.12  E-value=0.058  Score=51.69  Aligned_cols=27  Identities=22%  Similarity=0.537  Sum_probs=25.4

Q ss_pred             ceeeecCCCCCCCHHHHHHHhhcCCCc
Q 030532          139 YRLFCGDLGNEVNDDVLSKAFSRFPSF  165 (175)
Q Consensus       139 frIFVGNLs~dVTDe~L~~aFskYGSV  165 (175)
                      .+||||+|+++++|+.|.+.|..||+|
T Consensus       260 ~KVFvGGlp~dise~~i~~~F~~FGs~  286 (520)
T KOG0129|consen  260 RKVFVGGLPWDITEAQINASFGQFGSV  286 (520)
T ss_pred             cceeecCCCccccHHHHHhhcccccce
Confidence            469999999999999999999999995

>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]

Probab=92.58  E-value=0.12  Score=48.82  Aligned_cols=38  Identities=11%  Similarity=0.230  Sum_probs=35.4

Q ss_pred             CceeeecCCCCCCCHHHHHHHhhcCCCcceeEEeecCC
Q 030532          138 DYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVSFCFT  175 (175)
Q Consensus       138 dfrIFVGNLs~dVTDe~L~~aFskYGSV~~AKVV~D~~  175 (175)
                      -+||||.....|.+|++|..+|+-||.|.++++..+.|
T Consensus       210 fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt  247 (544)
T KOG0124|consen  210 FNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPT  247 (544)
T ss_pred             hheEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCC
Confidence            46899999999999999999999999999999988765

>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]

Probab=91.85  E-value=0.15  Score=42.52  Aligned_cols=36  Identities=8%  Similarity=0.283  Sum_probs=32.9

Q ss_pred             ceeeecCCCCCCCHHHHHHHhhcCCCcceeEEeecC
Q 030532          139 YRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVSFCF  174 (175)
Q Consensus       139 frIFVGNLs~dVTDe~L~~aFskYGSV~~AKVV~D~  174 (175)
                      +-|||-++..+.||+++.+.|..||.|...++-.|.
T Consensus        73 wIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDR  108 (170)
T KOG0130|consen   73 WIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDR  108 (170)
T ss_pred             EEEEEeccCcchhHHHHHHHHhhcccccceeecccc
Confidence            459999999999999999999999999998887764

>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]

Probab=91.70  E-value=0.19  Score=45.74  Aligned_cols=39  Identities=18%  Similarity=0.178  Sum_probs=36.2

Q ss_pred             CCCceeeecCCCCCCCHHHHHHHhhcCCCcceeEEeecC
Q 030532          136 ENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVSFCF  174 (175)
Q Consensus       136 ~ndfrIFVGNLs~dVTDe~L~~aFskYGSV~~AKVV~D~  174 (175)
                      +...+|.|.-|+..+|+|+|+.+|+.-|+|.++|+|+|-
T Consensus        39 ~skTNLIvNYLPQ~MTqdE~rSLF~SiGeiEScKLvRDK   77 (360)
T KOG0145|consen   39 ESKTNLIVNYLPQNMTQDELRSLFGSIGEIESCKLVRDK   77 (360)
T ss_pred             cccceeeeeecccccCHHHHHHHhhcccceeeeeeeecc
Confidence            456789999999999999999999999999999999984

>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]

Probab=91.11  E-value=0.16  Score=49.05  Aligned_cols=38  Identities=21%  Similarity=0.262  Sum_probs=33.0

Q ss_pred             CCCCCCCceeeecCCCCCCCHHHHHHHhhcCCCcceeE
Q 030532          132 AEWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAK  169 (175)
Q Consensus       132 ~Ew~~ndfrIFVGNLs~dVTDe~L~~aFskYGSV~~AK  169 (175)
                      .|.+-+.-.|+|=||+..|++++|+.+|+.||+|+..+
T Consensus        69 ~~~~~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir  106 (549)
T KOG4660|consen   69 SEKDMNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIR  106 (549)
T ss_pred             CcccCccceEEEEecCCcCCHHHHHHHHHhhcchhhhh
Confidence            34556777899999999999999999999999998744

>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]

Probab=90.87  E-value=0.2  Score=45.33  Aligned_cols=38  Identities=29%  Similarity=0.386  Sum_probs=34.8

Q ss_pred             CCceeeecCCCCCCCHHHHHHHhhcCCCcceeEEeecC
Q 030532          137 NDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVSFCF  174 (175)
Q Consensus       137 ndfrIFVGNLs~dVTDe~L~~aFskYGSV~~AKVV~D~  174 (175)
                      ..-+|||-||+..++++.|.+.|+.||.|.+++|+.|.
T Consensus       269 ~~~nl~vknld~~~~~e~L~~~f~~~GeI~s~kv~~~~  306 (369)
T KOG0123|consen  269 QGANLYVKNLDETLSDEKLRKIFSSFGEITSAKVMVDE  306 (369)
T ss_pred             cccccccccCccccchhHHHHHHhcccceeeEEEEecc
Confidence            45579999999999999999999999999999999874

>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]

Probab=90.71  E-value=0.62  Score=43.34  Aligned_cols=30  Identities=10%  Similarity=0.184  Sum_probs=27.5

Q ss_pred             CCceeeecCCCCCCCHHHHHHHhhcCCCcc
Q 030532          137 NDYRLFCGDLGNEVNDDVLSKAFSRFPSFN  166 (175)
Q Consensus       137 ndfrIFVGNLs~dVTDe~L~~aFskYGSV~  166 (175)
                      -+.+|||.||+.|+|.++..++|+++|-|.
T Consensus       133 ~Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~  162 (382)
T KOG1548|consen  133 VNTSVYVSGLPLDITVDEFAEVMSKCGIIM  162 (382)
T ss_pred             cCceEEecCCCCcccHHHHHHHHHhcceEe
Confidence            467899999999999999999999999874

>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]

Probab=89.09  E-value=0.77  Score=43.81  Aligned_cols=59  Identities=17%  Similarity=0.183  Sum_probs=45.9

Q ss_pred             CCccccccCCCcccCCCCCCCCCCC---ceeeecCCCCCCCHHHHHHHhhcCCCcceeEEee
Q 030532          114 KKSIPRKAAGQTWEDPTLAEWPEND---YRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVSF  172 (175)
Q Consensus       114 ~k~~~R~a~G~~WeDptL~Ew~~nd---frIFVGNLs~dVTDe~L~~aFskYGSV~~AKVV~  172 (175)
                      .|.++-+.+-|+=.-..|.|.+..+   ..|-+=||+.|-.-+.|.++|+.+|+|..+||+.
T Consensus       204 ~kL~vseDgkKVrRisPlp~~~~eel~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIck  265 (484)
T KOG1855|consen  204 SKLEVSEDGKKVRRISPLPEFDEEELPSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICK  265 (484)
T ss_pred             ceEEEccCCceeeecCCCCCccccccccceEEEecCCcchHHHHHHHHhhcccceeeeeecC
Confidence            3444555555555566777776654   4688999999999999999999999999999874

>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]

Probab=85.21  E-value=0.91  Score=43.79  Aligned_cols=37  Identities=14%  Similarity=0.153  Sum_probs=33.2

Q ss_pred             CceeeecCCCCCCCHHHHHHHhh-cCCCcceeEEeecC
Q 030532          138 DYRLFCGDLGNEVNDDVLSKAFS-RFPSFNMAKVSFCF  174 (175)
Q Consensus       138 dfrIFVGNLs~dVTDe~L~~aFs-kYGSV~~AKVV~D~  174 (175)
                      .-+||||+|+..++.++|..+|+ -||.|.=|-|=+|+
T Consensus       370 rrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~  407 (520)
T KOG0129|consen  370 RRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDP  407 (520)
T ss_pred             cceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCc
Confidence            45699999999999999999998 99999988887773

>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]

Probab=83.39  E-value=0.83  Score=40.17  Aligned_cols=37  Identities=19%  Similarity=0.275  Sum_probs=31.3

Q ss_pred             CCceeeecCCCCCCCHHHHHHHhhcCCCcceeEEeec
Q 030532          137 NDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVSFC  173 (175)
Q Consensus       137 ndfrIFVGNLs~dVTDe~L~~aFskYGSV~~AKVV~D  173 (175)
                      .+.-+|||||++++++++|.+.|..+|.+...++..+
T Consensus       184 s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~  220 (285)
T KOG4210|consen  184 SDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTD  220 (285)
T ss_pred             cccceeecccccccchHHHhhhccCcCcceeeccCCC
Confidence            3444559999999999999999999999998887655

>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]

Probab=83.33  E-value=1.3  Score=43.55  Aligned_cols=36  Identities=19%  Similarity=0.237  Sum_probs=32.9

Q ss_pred             CCceeeecCCCCCCCHHHHHHHhhcCCCcceeEEee
Q 030532          137 NDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVSF  172 (175)
Q Consensus       137 ndfrIFVGNLs~dVTDe~L~~aFskYGSV~~AKVV~  172 (175)
                      ...||.|-||+|.+.+++|..+|+.||-|..+.|..
T Consensus       116 ~k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~  151 (678)
T KOG0127|consen  116 PKWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPR  151 (678)
T ss_pred             ccceEEeecCCcccCcHHHHHHHhhcceEEEEEccc
Confidence            367999999999999999999999999999987754

>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]

Probab=82.38  E-value=1  Score=40.38  Aligned_cols=37  Identities=24%  Similarity=0.322  Sum_probs=34.4

Q ss_pred             CceeeecCCCCCCCHHHHHHHhhcCCCcceeEEeecC
Q 030532          138 DYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVSFCF  174 (175)
Q Consensus       138 dfrIFVGNLs~dVTDe~L~~aFskYGSV~~AKVV~D~  174 (175)
                      |..|+|-||..-|+-|+|...|++||.+.++-|+.|.
T Consensus        31 ~a~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD~   67 (275)
T KOG0115|consen   31 HAELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVDD   67 (275)
T ss_pred             cceEEEEecchhhhhHHHHHhhhhcCccchheeeecc
Confidence            4779999999999999999999999999999888885

>PF13893 RRM_5: RNA recognition motif

Probab=81.62  E-value=1.2  Score=28.47  Aligned_cols=19  Identities=32%  Similarity=0.312  Sum_probs=15.1

Q ss_pred             HHHHhhcCCCcceeEEeec
Q 030532          155 LSKAFSRFPSFNMAKVSFC  173 (175)
Q Consensus       155 L~~aFskYGSV~~AKVV~D  173 (175)
                      |.++|++||.|.+.++..+
T Consensus         1 L~~~f~~fG~V~~i~~~~~   19 (56)
T PF13893_consen    1 LYKLFSKFGEVKKIKIFKK   19 (56)
T ss_dssp             HHHHHTTTS-EEEEEEETT
T ss_pred             ChHHhCCcccEEEEEEEeC
Confidence            7899999999999887643

(a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....

>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]

Probab=80.67  E-value=2.1  Score=40.59  Aligned_cols=29  Identities=24%  Similarity=0.214  Sum_probs=23.8

Q ss_pred             CCCCceeeecCCCCCCCHHHHHHHhhcCC
Q 030532          135 PENDYRLFCGDLGNEVNDDVLSKAFSRFP  163 (175)
Q Consensus       135 ~~ndfrIFVGNLs~dVTDe~L~~aFskYG  163 (175)
                      ....+.+|||||.|-+||++|.++....|
T Consensus        77 ~Grk~~~YvGNL~W~TTD~DL~~A~~S~G  105 (498)
T KOG4849|consen   77 EGRKYCCYVGNLLWYTTDADLLKALQSTG  105 (498)
T ss_pred             cCceEEEEecceeEEeccHHHHHHHHhhh
Confidence            34678899999999999999988875433

>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]

Probab=80.56  E-value=1.4  Score=44.04  Aligned_cols=33  Identities=21%  Similarity=0.322  Sum_probs=30.1

Q ss_pred             CCCceeeecCCCCCCCHHHHHHHhhcCCCccee
Q 030532          136 ENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMA  168 (175)
Q Consensus       136 ~ndfrIFVGNLs~dVTDe~L~~aFskYGSV~~A  168 (175)
                      ..+.-|+||||+.++.+++|..+|..||.|.+.
T Consensus       383 rs~~vil~kNlpa~t~~~elt~~F~~fG~i~rv  415 (725)
T KOG0110|consen  383 RSDTVILVKNLPAGTLSEELTEAFLRFGEIGRV  415 (725)
T ss_pred             hhcceeeeccCccccccHHHHHHhhccccccee
Confidence            457889999999999999999999999999864

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	175
1fj7_A	101	Nucleolin RBD1, protein C23; RNP, RRM, RNA binding	4e-17
3bs9_A	87	Nucleolysin TIA-1 isoform P40; RNA recognition mot	5e-10
2dhg_A	104	TRNA selenocysteine associated protein (SECP43); R	6e-10
2i2y_A	150	Fusion protein consists of immunoglobin G- binding	1e-08
3md1_A	83	Nuclear and cytoplasmic polyadenylated RNA-bindin	3e-08
2dgo_A	115	Cytotoxic granule-associated RNA binding protein 1	3e-08
3md3_A	166	Nuclear and cytoplasmic polyadenylated RNA-bindin	6e-06
4f02_A	213	Polyadenylate-binding protein 1; mRNA, eukaryotic	1e-04
2qfj_A	216	FBP-interacting repressor; protein-DNA complex; HE	2e-04
2d9p_A	103	Polyadenylate-binding protein 3; RRM domain, struc	8e-04

>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1 Length = 101

 Score = 71.5 bits (176), Expect = 4e-17
 Identities = 12/48 (25%), Positives = 16/48 (33%)

Query: 123 GQTWEDPTLAEWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKV 170
               EDP         + LF G+L    +   L  A S   + N   V
Sbjct: 2   SHMLEDPVEGSESTTPFNLFIGNLNPNKSVAELKVAISELFAKNDLAV 49

>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens} Length = 87

 Score = 52.6 bits (127), Expect = 5e-10
 Identities = 10/36 (27%), Positives = 19/36 (52%)

Query: 135 PENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKV 170
             + + +F GDL  E+    ++ AF+ F   + A+V
Sbjct: 3   LGSHFHVFVGDLSPEITTAAIAAAFAPFGRISDARV 38

>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 104

 Score = 52.7 bits (127), Expect = 6e-10
 Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 1/37 (2%)

Query: 135 PENDYRLFCGDLGNEVNDDVLSKAFS-RFPSFNMAKV 170
              +Y LF GDL  +V+D +L + F   +PS    KV
Sbjct: 6   SGPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKV 42

>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A Length = 150

 Score = 50.6 bits (121), Expect = 1e-08
 Identities = 18/100 (18%), Positives = 32/100 (32%), Gaps = 8/100 (8%)

Query: 83  QRDAQTITPEALESVKAALASS---DIEHKAETKKKSIPRKAAGQTWEDPTLAEWPENDY 139
           +   + +     E V    A+    D E   +   K+                +    D 
Sbjct: 15  ETTTEAVDAATAEKVFKQYANDNGVDGEWTYDDATKTFTVTEGSHHHHHHMHRDSCPLDC 74

Query: 140 RLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVS-----FCF 174
           +++ G+LGN  N   L +AF  +       V+     F F
Sbjct: 75  KVYVGNLGNNGNKTELERAFGYYGPLRSVWVARNPPGFAF 114

>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} Length = 83

 Score = 47.9 bits (115), Expect = 3e-08
 Identities = 14/32 (43%), Positives = 18/32 (56%)

Query: 139 YRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKV 170
           + LF GDL   V+D+ L  AF  FPS+    V
Sbjct: 2   FNLFVGDLNVNVDDETLRNAFKDFPSYLSGHV 33

>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A Length = 115

 Score = 48.5 bits (116), Expect = 3e-08
 Identities = 11/36 (30%), Positives = 19/36 (52%)

Query: 135 PENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKV 170
             N + +F GDL  E+  + +  AF+ F   + A+V
Sbjct: 12  TSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARV 47

>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae} Length = 166

 Score = 43.3 bits (103), Expect = 6e-06
 Identities = 14/35 (40%), Positives = 20/35 (57%)

Query: 136 ENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKV 170
           ++ + LF GDL   V+D+ L  AF  FPS+    V
Sbjct: 85  DDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHV 119

>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A* Length = 213

 Score = 40.0 bits (94), Expect = 1e-04
 Identities = 8/35 (22%), Positives = 14/35 (40%)

Query: 136 ENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKV 170
                +F  +L   +++  L   FS F +    KV
Sbjct: 101 SGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKV 135

>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A Length = 216

 Score = 39.6 bits (93), Expect = 2e-04
 Identities = 14/81 (17%), Positives = 27/81 (33%), Gaps = 2/81 (2%)

Query: 90  TPEALESVKAALASSDIEHKAETKKKSIPRKAAGQTWEDPTLAEWPENDYRLFCGDLGNE 149
            PEA +     + S  +  +     +      A        LAE      R++   +  +
Sbjct: 79  VPEAAQLALEQMNSVMLGGRNIKVGRPSNIGQAQP--IIDQLAEEARAFNRIYVASVHQD 136

Query: 150 VNDDVLSKAFSRFPSFNMAKV 170
           ++DD +   F  F     A +
Sbjct: 137 LSDDDIKSVFEAFGKIKSATL 157

>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 103

 Score = 36.4 bits (85), Expect = 8e-04
 Identities = 12/31 (38%), Positives = 19/31 (61%)

Query: 140 RLFCGDLGNEVNDDVLSKAFSRFPSFNMAKV 170
            L+  +L + ++D+ L KAFS F +   AKV
Sbjct: 17  NLYVKNLDDGIDDERLRKAFSPFGTITSAKV 47

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	175
1fj7_A	101	Nucleolin RBD1, protein C23; RNP, RRM, RNA binding	99.06
2la6_A	99	RNA-binding protein FUS; structural genomics, nort	98.88
2jrs_A	108	RNA-binding protein 39; RNA binding motif of RBM39	98.86
4f25_A	115	Polyadenylate-binding protein 1; RRM fold, transla	98.8
3d2w_A	89	TAR DNA-binding protein 43; DP-43 proteinopathy, T	98.79
2rs2_A	109	Musashi-1, RNA-binding protein musashi homolog 1;	98.77
4fxv_A	99	ELAV-like protein 1; RNA recognition motif, putati	98.75
1sjq_A	105	Polypyrimidine tract-binding protein 1; babbab mot	98.72
1x4c_A	108	Splicing factor, arginine/serine-rich 1; structura	98.71
2dnh_A	105	Bruno-like 5, RNA binding protein; RRM domain, RBD	98.69
3s7r_A	87	Heterogeneous nuclear ribonucleoprotein A/B; ferre	98.69
1wf0_A	88	TDP-43, TAR DNA-binding protein-43; structural gen	98.68
3p5t_L	90	Cleavage and polyadenylation specificity factor S;	98.68
2dhg_A	104	TRNA selenocysteine associated protein (SECP43); R	98.67
3s8s_A	110	Histone-lysine N-methyltransferase SETD1A; chromat	98.67
3md1_A	83	Nuclear and cytoplasmic polyadenylated RNA-bindin	98.67
3bs9_A	87	Nucleolysin TIA-1 isoform P40; RNA recognition mot	98.66
2xs2_A	102	Deleted in azoospermia-like; RNA binding protein-R	98.65
2cpy_A	114	RNA-binding protein 12; RRM domain, structural gen	98.64
1s79_A	103	Lupus LA protein; RRM, alpha/beta, RNA binding pro	98.63
2cqi_A	103	Nucleolysin TIAR; RNA recognition motif, RRM, RNA	98.62
2dgp_A	106	Bruno-like 4, RNA binding protein; RRM domain, str	98.62
2cpz_A	115	CUG triplet repeat RNA-binding protein 1; RRM doma	98.61
2dgs_A	99	DAZ-associated protein 1; RRM domain, structural g	98.61
2dh8_A	105	DAZ-associated protein 1; RRM domain, structural g	98.61
2div_A	99	TRNA selenocysteine associated protein; structural	98.61
2cpf_A	98	RNA binding motif protein 19; RNA recognition moti	98.61
2do0_A	114	HnRNP M, heterogeneous nuclear ribonucleoprotein M	98.6
1x4h_A	111	RNA-binding protein 28; structural genomics, RRM d	98.6
1x4e_A	85	RNA binding motif, single-stranded interacting pro	98.6
2cq3_A	103	RNA-binding protein 9; RRM domain, structural geno	98.6
2kn4_A	158	Immunoglobulin G-binding protein G, splicing FACT	98.6
2ywk_A	95	Putative RNA-binding protein 11; RRM-domain, struc	98.6
4a8x_A	88	RNA-binding protein with serine-rich domain 1; tra	98.59
3mdf_A	85	Peptidyl-prolyl CIS-trans isomerase E; RRM domain,	98.59
2cqg_A	103	TDP-43, TAR DNA-binding protein-43; RNA recognitio	98.58
2cpj_A	99	Non-POU domain-containing octamer-binding protein;	98.58
2dnp_A	90	RNA-binding protein 14; RRM domain, RBD, structura	98.58
2err_A	109	Ataxin-2-binding protein 1; protein-RNA complex, R	98.58
2dgv_A	92	HnRNP M, heterogeneous nuclear ribonucleoprotein M	98.58
1x5u_A	105	Splicing factor 3B subunit 4 (spliceosome associat	98.58
2mss_A	75	Protein (musashi1); RNA-binding domain, RNA bindin	98.58
2i2y_A	150	Fusion protein consists of immunoglobin G- binding	98.57
2dgx_A	96	KIAA0430 protein; RRM domain, structural genomics,	98.57
2dnz_A	95	Probable RNA-binding protein 23; RNA recognition m	98.57
2khc_A	118	Testis-specific RNP-type RNA binding protein; RRM,	98.57
2ad9_A	119	Polypyrimidine tract-binding protein 1; RBD, RRM,	98.57
1x5t_A	96	Splicing factor 3B subunit 4; structure genomics,	98.57
1x4d_A	102	Matrin 3; structural genomics, RRM domain, NPPSFA,	98.57
2dgo_A	115	Cytotoxic granule-associated RNA binding protein 1	98.57
1wg5_A	104	Heterogeneous nuclear ribonucleoprotein H; structu	98.56
1uaw_A	77	Mouse-musashi-1; RNP-type structure, RNA binding p	98.56
3pgw_S	437	U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM	98.56
2cqd_A	116	RNA-binding region containing protein 1; RNA recog	98.56
2j76_E	100	EIF-4B, EIF4B, eukaryotic translation initiation f	98.56
2db1_A	118	Heterogeneous nuclear ribonucleoprotein F; RRM dom	98.56
2dgt_A	92	RNA-binding protein 30; RRM domain, structural gen	98.56
2lmi_A	107	GRSF-1, G-rich sequence factor 1; G-rich RNA seque	98.56
2cqb_A	102	Peptidyl-prolyl CIS-trans isomerase E; RNA recogni	98.56
1whw_A	99	Hypothetical protein riken cDNA 1200009A02; RNA re	98.55
1x5o_A	114	RNA binding motif, single-stranded interacting pro	98.55
3ulh_A	107	THO complex subunit 4; nuclear protein, RNA bindin	98.55
2cph_A	107	RNA binding motif protein 19; RNA recognition moti	98.55
2m2b_A	131	RNA-binding protein 10; T-cell, JCSG, MPP, PSI-bio	98.54
1x5s_A	102	Cold-inducible RNA-binding protein; structure geno	98.54
2d9p_A	103	Polyadenylate-binding protein 3; RRM domain, struc	98.54
2cqc_A	95	Arginine/serine-rich splicing factor 10; RNA recog	98.54
2lkz_A	95	RNA-binding protein 5; RRM; NMR {Homo sapiens}	98.54
2do4_A	100	Squamous cell carcinoma antigen recognized by T- c	98.54
2cq1_A	101	PTB-like protein L; RRM domain, structural genomic	98.53
2ytc_A	85	PRE-mRNA-splicing factor RBM22; RRM domain, RBD, s	98.53
3q2s_C	229	Cleavage and polyadenylation specificity factor S;	98.53
1wez_A	102	HnRNP H', FTP-3, heterogeneous nuclear ribonucleop	98.52
2e5h_A	94	Zinc finger CCHC-type and RNA-binding motif- conta	98.52
2cq0_A	103	Eukaryotic translation initiation factor 3 subunit	98.52
3ucg_A	89	Polyadenylate-binding protein 2; ferredoxin-like,	98.52
1u6f_A	139	Tcubp1, RNA-binding protein UBP1; trypanosome, mRN	98.52
3n9u_C	156	Cleavage and polyadenylation specificity factor S;	98.52
2kt5_A	124	RNA and export factor-binding protein 2; chaperone	98.52
1wi8_A	104	EIF-4B, eukaryotic translation initiation factor 4	98.52
3beg_B	115	Splicing factor, arginine/serine-rich 1; kinase, S	98.52
1iqt_A	75	AUF1, heterogeneous nuclear ribonucleoprotein D0;	98.51
2dnm_A	103	SRP46 splicing factor; RRM domain, RBD, structural	98.51
1p27_B	106	RNA-binding protein 8A; nuclear protein, mRNA spli	98.51
2cq4_A	114	RNA binding motif protein 23; RRM domain, structur	98.5
1wex_A	104	Hypothetical protein (riken cDNA 2810036L13); stru	98.5
2lxi_A	91	RNA-binding protein 10; NMR {Homo sapiens}	98.5
2e44_A	96	Insulin-like growth factor 2 mRNA binding protein	98.5
2fy1_A	116	RNA-binding motif protein, Y chromosome, family 1	98.49
2x1f_A	96	MRNA 3'-END-processing protein RNA15; transcriptio	98.49
1x4b_A	116	Heterogeneous nuclear ribonucleoproteins A2/B1; st	98.49
2dng_A	103	Eukaryotic translation initiation factor 4H; RRM d	98.49
2hvz_A	101	Splicing factor, arginine/serine-rich 7; RRM, RNA	98.48
1why_A	97	Hypothetical protein riken cDNA 1810017N16; RNA re	98.47
3ex7_B	126	RNA-binding protein 8A; protein-RNA complex, mRNA	98.47
1x4g_A	109	Nucleolysin TIAR; structural genomics, RRM domain,	98.47
2cqp_A	98	RNA-binding protein 12; RNA recognition motif, RRM	98.47
2dnq_A	90	RNA-binding protein 4B; RRM domain,RBD, structural	98.47
2la4_A	101	Nuclear and cytoplasmic polyadenylated RNA-bindin	98.47
2xnq_A	97	Nuclear polyadenylated RNA-binding protein 3; tran	98.47
2ek1_A	95	RNA-binding protein 12; RNA recognition motif, dim	98.47
3lqv_A	115	PRE-mRNA branch site protein P14; cysless mutant,	98.46
1x4a_A	109	Splicing factor, arginine/serine-rich 1 (splicing	98.46
2dgw_A	91	Probable RNA-binding protein 19; RRM domain, struc	98.46
2e5j_A	97	Methenyltetrahydrofolate synthetase domain contain	98.46
1p1t_A	104	Cleavage stimulation factor, 64 kDa subunit; RNA r	98.46
2jvr_A	111	Nucleolar protein 3; RNA recognition motif, nucleu	98.45
2dgu_A	103	Heterogeneous nuclear ribonucleoprotein Q; RRM dom	98.45
1oo0_B	110	CG8781-PA, drosophila Y14; RNA recognition motif,	98.45
2e5i_A	124	Heterogeneous nuclear ribonucleoprotein L-like; RR	98.45
2hgl_A	136	HNRPF protein, heterogeneous nuclear ribonucleopro	98.44
2dnl_A	114	Cytoplasmic polyadenylation element binding protei	98.44
1wel_A	124	RNA-binding protein 12; structural genomics, NPPSF	98.44
2cpe_A	113	RNA-binding protein EWS; RNA recognition motif, RR	98.43
2jwn_A	124	Embryonic polyadenylate-binding protein 2-B; epabp	98.43
2dha_A	123	FLJ20171 protein; RRM domain, structural genomics,	98.42
3r27_A	100	HnRNP L, heterogeneous nuclear ribonucleoprotein L	98.41
2ku7_A	140	MLL1 PHD3-CYP33 RRM chimeric protein; transcriptio	98.41
2dis_A	109	Unnamed protein product; structural genomics, RRM	98.41
2ki2_A	90	SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA	98.41
2kxn_B	129	Transformer-2 protein homolog beta; SR protein, RR	98.4
3ns6_A	100	Eukaryotic translation initiation factor 3 subuni;	98.38
2hgn_A	139	Heterogeneous nuclear ribonucleoprotein F; RNA rec	98.38
1h2v_Z	156	20 kDa nuclear CAP binding protein; CAP-binding-co	98.37
2jvo_A	108	Nucleolar protein 3; nucleus, phosphorylation, rib	98.37
2hgm_A	126	HNRPF protein, heterogeneous nuclear ribonucleopro	98.36
2e5g_A	94	U6 snRNA-specific terminal uridylyltransferase 1;	98.36
3zzy_A	130	Polypyrimidine tract-binding protein 1; protein bi	98.36
1x4f_A	112	Matrin 3; structural genomics, RRM domain, NPPSFA,	98.36
2fc9_A	101	NCL protein; structure genomics, RRM_1 domain, str	98.36
3md3_A	166	Nuclear and cytoplasmic polyadenylated RNA-bindin	98.35
2cpd_A	99	Apobec-1 stimulating protein; RNA recognition moti	98.35
2kvi_A	96	Nuclear polyadenylated RNA-binding protein 3; RNA-	98.34
2cpi_A	111	CCR4-NOT transcription complex subunit 4; RNA reco	98.33
1fjc_A	96	Nucleolin RBD2, protein C23; RNP, RRM, RNA binding	98.32
2dnn_A	109	RNA-binding protein 12; RRM domain, RBD, structura	98.31
1whx_A	111	Hypothetical protein riken cDNA 1200009A02; RNA re	98.27
2hzc_A	87	Splicing factor U2AF 65 kDa subunit; RNA splicing,	98.27
1rk8_A	165	CG8781-PA, CG8781-PA protein; mRNA processing, RRM	98.27
2lea_A	135	Serine/arginine-rich splicing factor 2; SR protein	98.27
1wf1_A	110	RNA-binding protein RALY; structural genomics, RRM	98.27
2cqh_A	93	IGF-II mRNA-binding protein 2 isoform A; RNA recog	98.26
2wbr_A	89	GW182, gawky, LD47780P; DNA-binding protein, RRM,	98.26
2qfj_A	216	FBP-interacting repressor; protein-DNA complex; HE	98.26
4f02_A	213	Polyadenylate-binding protein 1; mRNA, eukaryotic	98.25
2f3j_A	177	RNA and export factor binding protein 2; RRM domai	98.25
1nu4_A	97	U1A RNA binding domain; RNA recognition motif, U1	98.24
2lcw_A	116	RNA-binding protein FUS; RRM, nucleic acid binding	97.55
1l3k_A	196	Heterogeneous nuclear ribonucleoprotein A1; nuclea	98.23
1wg1_A	88	KIAA1579 protein, homolog EXC-7; RBD, structural g	98.23
3smz_A	284	Protein raver-1, ribonucleoprotein PTB-binding 1;	98.22
2krb_A	81	Eukaryotic translation initiation factor 3 subunit	98.22
3sde_A	261	Paraspeckle component 1; RRM, anti parallel right	98.21
3egn_A	143	RNA-binding protein 40; RNA recognition motif (RRM	98.2
1sjr_A	164	Polypyrimidine tract-binding protein 1; extended b	98.2
3nmr_A	175	Cugbp ELAV-like family member 1; RRM, PRE-mRNA spl	98.19
2cq2_A	114	Hypothetical protein LOC91801; RRM domain, structu	98.19
2nlw_A	105	Eukaryotic translation initiation factor 3 subunit	98.17
2g4b_A	172	Splicing factor U2AF 65 kDa subunit; protein-RNA c	98.15
2cpx_A	115	Hypothetical protein FLJ11016; RRM domain, structu	98.15
2qfj_A	216	FBP-interacting repressor; protein-DNA complex; HE	98.14
2voo_A	193	Lupus LA protein; RNA-binding protein, RNA recogni	98.12
2cjk_A	167	Nuclear polyadenylated RNA-binding protein 4; HRP1	98.11
2yh0_A	198	Splicing factor U2AF 65 kDa subunit; PRE-mRNA spli	98.11
2adc_A	229	Polypyrimidine tract-binding protein 1; RBD, RRM,	98.11
1x5p_A	97	Negative elongation factor E; structure genomics,	98.08
3pgw_A	282	U1-A; protein-RNA complex, U1 snRNA, SM fold, SM c	98.08
1b7f_A	168	Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP	98.07
1fxl_A	167	Paraneoplastic encephalomyelitis antigen HUD; prot	98.05
2ghp_A	292	U4/U6 snRNA-associated splicing factor PRP24; RNA	98.03
3sde_A	261	Paraspeckle component 1; RRM, anti parallel right	98.02
2a3j_A	127	U1 small nuclear ribonucleoprotein A; computationa	98.01
3tyt_A	205	Heterogeneous nuclear ribonucleoprotein L; ferredo	97.99
2fc8_A	102	NCL protein; structure genomics, RRM_1 domain, str	97.97
3u1l_A	240	PRE-mRNA-splicing factor CWC2; CSMP, zinc finger;	97.83
2ghp_A	292	U4/U6 snRNA-associated splicing factor PRP24; RNA	97.82
2bz2_A	121	Negative elongation factor E; NELF E, RNA recognit	97.8
1qm9_A	198	Polypyrimidine tract-binding protein; ribonucleopr	97.79
3smz_A	284	Protein raver-1, ribonucleoprotein PTB-binding 1;	97.7
2adc_A	229	Polypyrimidine tract-binding protein 1; RBD, RRM,	97.63
1fje_B	175	Nucleolin RBD12, protein C23; RNP, RRM, RNA bindin	97.51
1owx_A	121	Lupus LA protein, SS-B, LA; RRM, transcription; NM	97.38
2diu_A	96	KIAA0430 protein; structural genomics, RRM domain,	97.24
2pe8_A	105	Splicing factor 45; RRM, protein binding; 2.00A {H	96.21
2d9o_A	100	DNAJ (HSP40) homolog, subfamily C, member 17; RRM	96.04
1jmt_A	104	Splicing factor U2AF 35 kDa subunit; RRM, RNA spli	95.97
2dit_A	112	HIV TAT specific factor 1 variant; structural geno	95.37
2dnr_A	91	Synaptojanin-1; RRM domain, RBD, structural genomi	93.0
3ue2_A	118	Poly(U)-binding-splicing factor PUF60; RNA recogni	92.5
3v4m_A	105	Splicing factor U2AF 65 kDa subunit; canonical RNA	90.71
1ufw_A	95	Synaptojanin 2; RNP domain, structural genomics, r	89.29
3s6e_A	114	RNA-binding protein 39; ferredoxin-like, structura	86.88
4f25_A	115	Polyadenylate-binding protein 1; RRM fold, transla	80.47

>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1

Probab=99.06  E-value=3.8e-11  Score=83.28  Aligned_cols=51  Identities=22%  Similarity=0.212  Sum_probs=47.2

Q ss_pred             CCCcccCCCCCCCCCCCceeeecCCCCCCCHHHHHHHhhcCCCcceeEEeec
Q 030532          122 AGQTWEDPTLAEWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVSFC  173 (175)
Q Consensus       122 ~G~~WeDptL~Ew~~ndfrIFVGNLs~dVTDe~L~~aFskYGSV~~AKVV~D  173 (175)
                      |++.|++|+..+.+....+||||||++++|+++|+++|++||.|.. ++++|
T Consensus         1 G~~~~~~p~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~   51 (101)
T 1fj7_A            1 GSHMLEDPVEGSESTTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVD   51 (101)
T ss_dssp             CCCCCCCSCCSTTCSCSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCE
T ss_pred             CCCcCCCCCCcccCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEec
Confidence            6789999999999999999999999999999999999999999888 66665

>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}

Probab=98.88  E-value=3.5e-09  Score=73.24  Aligned_cols=49  Identities=10%  Similarity=0.114  Sum_probs=44.5

Q ss_pred             ccCCCCCCCCCCCceeeecCCCCCCCHHHHHHHhhcCCCcce--------eEEeecC
Q 030532          126 WEDPTLAEWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNM--------AKVSFCF  174 (175)
Q Consensus       126 WeDptL~Ew~~ndfrIFVGNLs~dVTDe~L~~aFskYGSV~~--------AKVV~D~  174 (175)
                      |.++.+..++....+||||||++++|+++|+++|++||.|..        ++|++|.
T Consensus         1 ~~~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~   57 (99)
T 2la6_A            1 MGHHHHHHSHSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDR   57 (99)
T ss_dssp             CCSSCSCCSCCCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECT
T ss_pred             CCCCCCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecC
Confidence            567777778889999999999999999999999999999999        9999873

>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}

Probab=98.86  E-value=5.7e-09  Score=74.60  Aligned_cols=58  Identities=16%  Similarity=0.198  Sum_probs=52.0

Q ss_pred             cccccCCCcccCCCCCCCCCCCceeeecCCCCCCCHHHHHHHhhcCCCcceeEEeecC
Q 030532          117 IPRKAAGQTWEDPTLAEWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVSFCF  174 (175)
Q Consensus       117 ~~R~a~G~~WeDptL~Ew~~ndfrIFVGNLs~dVTDe~L~~aFskYGSV~~AKVV~D~  174 (175)
                      +.-+-.+..|...++...++...+||||||+.++|+++|+++|++||.|.+++|+.|.
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~   62 (108)
T 2jrs_A            5 HHHHSHMAAAMANNLQKGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDS   62 (108)
T ss_dssp             CCCCSCSSSSSCCSSCCSCSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEET
T ss_pred             chhhhhhccccccccccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcC
Confidence            3445567889999999999999999999999999999999999999999999999873

>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A

Probab=98.80  E-value=3.6e-09  Score=75.99  Aligned_cols=38  Identities=21%  Similarity=0.292  Sum_probs=34.9

Q ss_pred             CCceeeecCCCCCCCHHHHHHHhhcCCCcceeEEeecC
Q 030532          137 NDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVSFCF  174 (175)
Q Consensus       137 ndfrIFVGNLs~dVTDe~L~~aFskYGSV~~AKVV~D~  174 (175)
                      ...+||||||++++||++|+++|++||.|.+++|+.|.
T Consensus         4 ~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~   41 (115)
T 4f25_A            4 GSGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE   41 (115)
T ss_dssp             -CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET
T ss_pred             CCCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecC
Confidence            35689999999999999999999999999999999884

>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}

Probab=98.79  E-value=3.4e-09  Score=73.62  Aligned_cols=39  Identities=10%  Similarity=0.212  Sum_probs=34.7

Q ss_pred             CCCCceeeecCCCCCCCHHHHHHHhhcCCCcceeEEeec
Q 030532          135 PENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVSFC  173 (175)
Q Consensus       135 ~~ndfrIFVGNLs~dVTDe~L~~aFskYGSV~~AKVV~D  173 (175)
                      .....+||||||++++||++|+++|++||.|.+++|+.|
T Consensus         8 ~~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~   46 (89)
T 3d2w_A            8 HHHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP   46 (89)
T ss_dssp             ---CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS
T ss_pred             CCCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC
Confidence            456889999999999999999999999999999999876

>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}

Probab=98.77  E-value=5.1e-09  Score=74.79  Aligned_cols=49  Identities=16%  Similarity=0.143  Sum_probs=34.6

Q ss_pred             ccCCCCCCCCCCCceeeecCCCCCCCHHHHHHHhhcCCCcceeEEeecC
Q 030532          126 WEDPTLAEWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVSFCF  174 (175)
Q Consensus       126 WeDptL~Ew~~ndfrIFVGNLs~dVTDe~L~~aFskYGSV~~AKVV~D~  174 (175)
                      |..+.+.+.+.+..+||||||++++|+++|+++|++||.|.+++|+.|.
T Consensus        13 ~~~~~~~~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~   61 (109)
T 2rs2_A           13 GLVPRGSHMGSSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDP   61 (109)
T ss_dssp             -------------CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCT
T ss_pred             CCCccccccCCCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECC
Confidence            4455566777788999999999999999999999999999999999874

>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}

Probab=98.75  E-value=7.2e-09  Score=73.41  Aligned_cols=38  Identities=21%  Similarity=0.163  Sum_probs=35.1

Q ss_pred             CCceeeecCCCCCCCHHHHHHHhhcCCCcceeEEeecC
Q 030532          137 NDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVSFCF  174 (175)
Q Consensus       137 ndfrIFVGNLs~dVTDe~L~~aFskYGSV~~AKVV~D~  174 (175)
                      ...+||||||++++|+++|+++|++||.|.+++|+.|.
T Consensus        18 ~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~   55 (99)
T 4fxv_A           18 QGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDK   55 (99)
T ss_dssp             CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECS
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecC
Confidence            34589999999999999999999999999999999874

>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=98.72  E-value=8.2e-09  Score=76.53  Aligned_cols=39  Identities=8%  Similarity=-0.117  Sum_probs=36.0

Q ss_pred             CCCCceeeecCCCCCCCHHHHHHHhhcCCCcceeEEeec
Q 030532          135 PENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVSFC  173 (175)
Q Consensus       135 ~~ndfrIFVGNLs~dVTDe~L~~aFskYGSV~~AKVV~D  173 (175)
                      +....+||||||++++||++|+++|++||.|.+++|+.|
T Consensus        13 ~~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~   51 (105)
T 1sjq_A           13 GVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG   51 (105)
T ss_dssp             CCCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETT
T ss_pred             CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC
Confidence            456779999999999999999999999999999999876

>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1

Probab=98.71  E-value=1.3e-08  Score=71.95  Aligned_cols=39  Identities=13%  Similarity=-0.004  Sum_probs=36.3

Q ss_pred             CCCCceeeecCCCCCCCHHHHHHHhhcCCCcceeEEeec
Q 030532          135 PENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVSFC  173 (175)
Q Consensus       135 ~~ndfrIFVGNLs~dVTDe~L~~aFskYGSV~~AKVV~D  173 (175)
                      ....++||||||++++|+++|+++|++||.|..++|+.|
T Consensus        12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~   50 (108)
T 1x4c_A           12 RRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD   50 (108)
T ss_dssp             CSCCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT
T ss_pred             CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC
Confidence            456899999999999999999999999999999999875

>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A

Probab=98.69  E-value=2.4e-08  Score=69.29  Aligned_cols=41  Identities=20%  Similarity=0.256  Sum_probs=37.5

Q ss_pred             CCCCCceeeecCCCCCCCHHHHHHHhhcCCCcceeEEeecC
Q 030532          134 WPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVSFCF  174 (175)
Q Consensus       134 w~~ndfrIFVGNLs~dVTDe~L~~aFskYGSV~~AKVV~D~  174 (175)
                      .+....+||||||+.++|+++|+++|++||.|.+++|+.|.
T Consensus        11 ~~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~   51 (105)
T 2dnh_A           11 RGGRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGP   51 (105)
T ss_dssp             SCCCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECS
T ss_pred             cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC
Confidence            34567899999999999999999999999999999999874

>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A

Probab=98.69  E-value=2.2e-08  Score=67.32  Aligned_cols=40  Identities=18%  Similarity=0.295  Sum_probs=36.8

Q ss_pred             CCCCceeeecCCCCCCCHHHHHHHhhcCCCcceeEEeecC
Q 030532          135 PENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVSFCF  174 (175)
Q Consensus       135 ~~ndfrIFVGNLs~dVTDe~L~~aFskYGSV~~AKVV~D~  174 (175)
                      +.+..+||||||++++|+++|+++|++||.|.+++|+.|.
T Consensus         8 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~   47 (87)
T 3s7r_A            8 EEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDP   47 (87)
T ss_dssp             CSCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECT
T ss_pred             CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecC
Confidence            3567899999999999999999999999999999999874

>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=98.68  E-value=1.3e-08  Score=68.93  Aligned_cols=38  Identities=16%  Similarity=0.244  Sum_probs=35.1

Q ss_pred             CCCceeeecCCCCCCCHHHHHHHhhcCCCcceeEEeec
Q 030532          136 ENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVSFC  173 (175)
Q Consensus       136 ~ndfrIFVGNLs~dVTDe~L~~aFskYGSV~~AKVV~D  173 (175)
                      ....+||||||++++|+++|+++|++||.|.+++|+.|
T Consensus         3 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~   40 (88)
T 1wf0_A            3 SGSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP   40 (88)
T ss_dssp             SCCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS
T ss_pred             CCCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC
Confidence            35679999999999999999999999999999999876

>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C

Probab=98.68  E-value=1.3e-08  Score=69.61  Aligned_cols=36  Identities=19%  Similarity=0.113  Sum_probs=32.7

Q ss_pred             ceeeecCCCCCCCHHHHHHHhhcCC--CcceeEEeecC
Q 030532          139 YRLFCGDLGNEVNDDVLSKAFSRFP--SFNMAKVSFCF  174 (175)
Q Consensus       139 frIFVGNLs~dVTDe~L~~aFskYG--SV~~AKVV~D~  174 (175)
                      ++||||||++++|+++|+++|++||  .|.+++|+.|.
T Consensus         2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~   39 (90)
T 3p5t_L            2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENR   39 (90)
T ss_dssp             --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECT
T ss_pred             eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecC
Confidence            5799999999999999999999999  99999999884

>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.67  E-value=2.2e-08  Score=69.37  Aligned_cols=39  Identities=36%  Similarity=0.603  Sum_probs=36.5

Q ss_pred             CCCceeeecCCCCCCCHHHHHHHhhc-CCCcceeEEeecC
Q 030532          136 ENDYRLFCGDLGNEVNDDVLSKAFSR-FPSFNMAKVSFCF  174 (175)
Q Consensus       136 ~ndfrIFVGNLs~dVTDe~L~~aFsk-YGSV~~AKVV~D~  174 (175)
                      ....+||||||++++|+++|+++|++ ||.|.+++|+.|.
T Consensus         7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~   46 (104)
T 2dhg_A            7 GPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQ   46 (104)
T ss_dssp             SCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECT
T ss_pred             CCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECC
Confidence            46789999999999999999999999 9999999999874

>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}

Probab=98.67  E-value=2.3e-08  Score=72.41  Aligned_cols=39  Identities=8%  Similarity=0.098  Sum_probs=36.1

Q ss_pred             CCCceeeecCCCCCCCHHHHHHHhhcCCCcceeEEeecC
Q 030532          136 ENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVSFCF  174 (175)
Q Consensus       136 ~ndfrIFVGNLs~dVTDe~L~~aFskYGSV~~AKVV~D~  174 (175)
                      ....+||||||++++||++|+++|++||.|.+++|++|.
T Consensus         4 ~p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~   42 (110)
T 3s8s_A            4 IPLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHP   42 (110)
T ss_dssp             SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT
T ss_pred             CCCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECC
Confidence            345689999999999999999999999999999999985

>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0

Probab=98.67  E-value=2.1e-08  Score=66.52  Aligned_cols=36  Identities=39%  Similarity=0.743  Sum_probs=34.2

Q ss_pred             ceeeecCCCCCCCHHHHHHHhhcCCCcceeEEeecC
Q 030532          139 YRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVSFCF  174 (175)
Q Consensus       139 frIFVGNLs~dVTDe~L~~aFskYGSV~~AKVV~D~  174 (175)
                      ++||||||+.++|+++|+++|++||.|.+++|+.|.
T Consensus         2 ~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~   37 (83)
T 3md1_A            2 FNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDM   37 (83)
T ss_dssp             EEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECT
T ss_pred             eEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcC
Confidence            689999999999999999999999999999999873

>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}

Probab=98.66  E-value=2e-08  Score=67.11  Aligned_cols=39  Identities=26%  Similarity=0.485  Sum_probs=35.2

Q ss_pred             CCCceeeecCCCCCCCHHHHHHHhhcCCCcceeEEeecC
Q 030532          136 ENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVSFCF  174 (175)
Q Consensus       136 ~ndfrIFVGNLs~dVTDe~L~~aFskYGSV~~AKVV~D~  174 (175)
                      .++.+||||||+.++|+++|+++|++||.|.+++|+.|.
T Consensus         4 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~   42 (87)
T 3bs9_A            4 GSHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDM   42 (87)
T ss_dssp             --CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECT
T ss_pred             CCceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecC
Confidence            467899999999999999999999999999999999873

>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A

Probab=98.65  E-value=1.6e-08  Score=70.06  Aligned_cols=42  Identities=17%  Similarity=0.214  Sum_probs=37.4

Q ss_pred             CCCCCCceeeecCCCCCCCHHHHHHHhhcCCCcceeEEeecC
Q 030532          133 EWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVSFCF  174 (175)
Q Consensus       133 Ew~~ndfrIFVGNLs~dVTDe~L~~aFskYGSV~~AKVV~D~  174 (175)
                      +.+....+||||||++++|+++|+++|++||.|.+++|+.|.
T Consensus         4 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~   45 (102)
T 2xs2_A            4 EGKIMPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDR   45 (102)
T ss_dssp             CCEEEEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECT
T ss_pred             CCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC
Confidence            334456799999999999999999999999999999999874

>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=98.64  E-value=3e-08  Score=70.86  Aligned_cols=41  Identities=7%  Similarity=-0.071  Sum_probs=37.6

Q ss_pred             CCCCCceeeecCCCCCCCHHHHHHHhhcCCCc-ceeEEeecC
Q 030532          134 WPENDYRLFCGDLGNEVNDDVLSKAFSRFPSF-NMAKVSFCF  174 (175)
Q Consensus       134 w~~ndfrIFVGNLs~dVTDe~L~~aFskYGSV-~~AKVV~D~  174 (175)
                      .+.+..+||||||++++|+++|+++|+.||.| .+++|++|.
T Consensus        11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~   52 (114)
T 2cpy_A           11 VNSAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDN   52 (114)
T ss_dssp             CCSCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCT
T ss_pred             CCCCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECC
Confidence            45678899999999999999999999999999 899999885

>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=98.63  E-value=2.9e-08  Score=71.28  Aligned_cols=39  Identities=3%  Similarity=-0.007  Sum_probs=36.2

Q ss_pred             CCCceeeecCCCCCCCHHHHHHHhhcCCCcceeEEeecC
Q 030532          136 ENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVSFCF  174 (175)
Q Consensus       136 ~ndfrIFVGNLs~dVTDe~L~~aFskYGSV~~AKVV~D~  174 (175)
                      ....+||||||++++|+++|.++|++||.|.+++|+.|.
T Consensus         9 ~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~   47 (103)
T 1s79_A            9 VKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTL   47 (103)
T ss_dssp             SGGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCC
T ss_pred             CCCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECC
Confidence            356789999999999999999999999999999999885

>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=98.62  E-value=4e-08  Score=68.12  Aligned_cols=41  Identities=20%  Similarity=0.279  Sum_probs=37.3

Q ss_pred             CCCCCCceeeecCCCCCCCHHHHHHHhhcCCCcceeEEeec
Q 030532          133 EWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVSFC  173 (175)
Q Consensus       133 Ew~~ndfrIFVGNLs~dVTDe~L~~aFskYGSV~~AKVV~D  173 (175)
                      +.+....+||||||++++|+++|+++|++||.|.+++|+.|
T Consensus        10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~   50 (103)
T 2cqi_A           10 EDDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITE   50 (103)
T ss_dssp             CCSCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECC
T ss_pred             CCCCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEec
Confidence            34457789999999999999999999999999999999987

>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A

Probab=98.62  E-value=2.8e-08  Score=69.01  Aligned_cols=41  Identities=17%  Similarity=0.227  Sum_probs=37.3

Q ss_pred             CCCCCceeeecCCCCCCCHHHHHHHhhcCCCcceeEEeecC
Q 030532          134 WPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVSFCF  174 (175)
Q Consensus       134 w~~ndfrIFVGNLs~dVTDe~L~~aFskYGSV~~AKVV~D~  174 (175)
                      .+....+||||||+.++|+++|+++|++||.|.+++|+.|.
T Consensus         9 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~   49 (106)
T 2dgp_A            9 KDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDR   49 (106)
T ss_dssp             CCTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCS
T ss_pred             CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecC
Confidence            34577899999999999999999999999999999998874

>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A

Probab=98.61  E-value=3.8e-08  Score=69.66  Aligned_cols=39  Identities=28%  Similarity=0.221  Sum_probs=36.3

Q ss_pred             CCCceeeecCCCCCCCHHHHHHHhhcCCCcceeEEeecC
Q 030532          136 ENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVSFCF  174 (175)
Q Consensus       136 ~ndfrIFVGNLs~dVTDe~L~~aFskYGSV~~AKVV~D~  174 (175)
                      .+..+||||||++++|+++|+++|++||.|.+++|+.|.
T Consensus        23 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~   61 (115)
T 2cpz_A           23 PEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDK   61 (115)
T ss_dssp             STTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECS
T ss_pred             CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC
Confidence            456799999999999999999999999999999999875

>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.61  E-value=3.8e-08  Score=67.78  Aligned_cols=39  Identities=13%  Similarity=0.319  Sum_probs=36.1

Q ss_pred             CCCceeeecCCCCCCCHHHHHHHhhcCCCcceeEEeecC
Q 030532          136 ENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVSFCF  174 (175)
Q Consensus       136 ~ndfrIFVGNLs~dVTDe~L~~aFskYGSV~~AKVV~D~  174 (175)
                      ....+||||||+.++|+++|+++|++||.|.+++|+.|.
T Consensus         8 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~   46 (99)
T 2dgs_A            8 SKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDA   46 (99)
T ss_dssp             SSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCT
T ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCC
Confidence            467799999999999999999999999999999999873

>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.61  E-value=3.8e-08  Score=68.46  Aligned_cols=40  Identities=18%  Similarity=0.194  Sum_probs=36.9

Q ss_pred             CCCCceeeecCCCCCCCHHHHHHHhhcCCCcceeEEeecC
Q 030532          135 PENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVSFCF  174 (175)
Q Consensus       135 ~~ndfrIFVGNLs~dVTDe~L~~aFskYGSV~~AKVV~D~  174 (175)
                      +.+..+||||||++++|+++|+++|++||.|.+++|+.|.
T Consensus        13 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~   52 (105)
T 2dh8_A           13 ADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDK   52 (105)
T ss_dssp             SSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECS
T ss_pred             CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCC
Confidence            4567899999999999999999999999999999999873

>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.61  E-value=4.9e-08  Score=67.03  Aligned_cols=39  Identities=21%  Similarity=0.254  Sum_probs=36.1

Q ss_pred             CCCceeeecCCCCCCCHHHHHHHhhcCCCcc-eeEEeecC
Q 030532          136 ENDYRLFCGDLGNEVNDDVLSKAFSRFPSFN-MAKVSFCF  174 (175)
Q Consensus       136 ~ndfrIFVGNLs~dVTDe~L~~aFskYGSV~-~AKVV~D~  174 (175)
                      ....+||||||+.++|+++|+++|++||.|. +++|+.|.
T Consensus         7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~   46 (99)
T 2div_A            7 GMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNR   46 (99)
T ss_dssp             SSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECS
T ss_pred             CCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecC
Confidence            4567899999999999999999999999999 99999884

>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1

Probab=98.61  E-value=4.4e-08  Score=67.15  Aligned_cols=39  Identities=18%  Similarity=0.242  Sum_probs=35.9

Q ss_pred             CCCceeeecCCCCCCCHHHHHHHhhcCCCcceeEEeecC
Q 030532          136 ENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVSFCF  174 (175)
Q Consensus       136 ~ndfrIFVGNLs~dVTDe~L~~aFskYGSV~~AKVV~D~  174 (175)
                      ....+||||||++++|+++|+++|++||.|.+++|+.|.
T Consensus         3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~   41 (98)
T 2cpf_A            3 SGSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKK   41 (98)
T ss_dssp             CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEE
T ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecC
Confidence            456789999999999999999999999999999999864

>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.60  E-value=5.9e-08  Score=68.18  Aligned_cols=40  Identities=18%  Similarity=0.038  Sum_probs=36.8

Q ss_pred             CCCCceeeecCCCCCCCHHHHHHHhhcCCCcceeEEeecC
Q 030532          135 PENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVSFCF  174 (175)
Q Consensus       135 ~~ndfrIFVGNLs~dVTDe~L~~aFskYGSV~~AKVV~D~  174 (175)
                      .....+||||||+.++|+++|+++|++||.|.+++|+.|.
T Consensus        12 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~   51 (114)
T 2do0_A           12 GRLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDK   51 (114)
T ss_dssp             CCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT
T ss_pred             CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC
Confidence            3567899999999999999999999999999999999874

>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1

Probab=98.60  E-value=4.7e-08  Score=68.18  Aligned_cols=41  Identities=12%  Similarity=0.245  Sum_probs=36.9

Q ss_pred             CCCCCceeeecCCCCCCCHHHHHHHhhcCCCcceeEEeecC
Q 030532          134 WPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVSFCF  174 (175)
Q Consensus       134 w~~ndfrIFVGNLs~dVTDe~L~~aFskYGSV~~AKVV~D~  174 (175)
                      ......+||||||++++|+++|+++|++||.|.+++|+.|.
T Consensus        11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~   51 (111)
T 1x4h_A           11 DVTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHP   51 (111)
T ss_dssp             CCCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCS
T ss_pred             cCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecC
Confidence            34567799999999999999999999999999999999873

>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=98.60  E-value=3.2e-08  Score=66.26  Aligned_cols=39  Identities=15%  Similarity=0.104  Sum_probs=36.1

Q ss_pred             CCCceeeecCCCCCCCHHHHHHHhhcCCCcceeEEeecC
Q 030532          136 ENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVSFCF  174 (175)
Q Consensus       136 ~ndfrIFVGNLs~dVTDe~L~~aFskYGSV~~AKVV~D~  174 (175)
                      +...+||||||++++|+++|+++|++||.|.+++|+.|.
T Consensus         3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~   41 (85)
T 1x4e_A            3 SGSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDK   41 (85)
T ss_dssp             CCCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCS
T ss_pred             CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecC
Confidence            466799999999999999999999999999999999873

>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=98.60  E-value=6.1e-08  Score=67.19  Aligned_cols=41  Identities=17%  Similarity=0.190  Sum_probs=37.2

Q ss_pred             CCCCCceeeecCCCCCCCHHHHHHHhhcCCCcceeEEeecC
Q 030532          134 WPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVSFCF  174 (175)
Q Consensus       134 w~~ndfrIFVGNLs~dVTDe~L~~aFskYGSV~~AKVV~D~  174 (175)
                      -+....+||||||++++|+++|+++|++||.|.+++|+.|.
T Consensus        11 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~   51 (103)
T 2cq3_A           11 SKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNE   51 (103)
T ss_dssp             CSCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCT
T ss_pred             CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecC
Confidence            34567899999999999999999999999999999999873

>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}

Probab=98.60  E-value=3.7e-08  Score=72.84  Aligned_cols=42  Identities=14%  Similarity=0.073  Sum_probs=37.8

Q ss_pred             CCCCCCceeeecCCCCCCCHHHHHHHhhcCCCcceeEEeecC
Q 030532          133 EWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVSFCF  174 (175)
Q Consensus       133 Ew~~ndfrIFVGNLs~dVTDe~L~~aFskYGSV~~AKVV~D~  174 (175)
                      +......+||||||++++|+++|+++|++||.|.+++|+.|.
T Consensus        65 ~~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~i~~~~  106 (158)
T 2kn4_A           65 MDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDR  106 (158)
T ss_dssp             CCCCBCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEECCCCS
T ss_pred             cCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecC
Confidence            344567899999999999999999999999999999999884

>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}

Probab=98.60  E-value=4.5e-08  Score=66.55  Aligned_cols=39  Identities=21%  Similarity=0.334  Sum_probs=36.3

Q ss_pred             CCCceeeecCCCCCCCHHHHHHHhhcCCCcceeEEeecC
Q 030532          136 ENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVSFCF  174 (175)
Q Consensus       136 ~ndfrIFVGNLs~dVTDe~L~~aFskYGSV~~AKVV~D~  174 (175)
                      ....+||||||++++++++|+++|++||.|.+++|+.|.
T Consensus        14 ~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~   52 (95)
T 2ywk_A           14 EADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDR   52 (95)
T ss_dssp             TGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECT
T ss_pred             CCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECC
Confidence            467899999999999999999999999999999999874

>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}

Probab=98.59  E-value=4.6e-08  Score=65.28  Aligned_cols=38  Identities=18%  Similarity=0.309  Sum_probs=35.1

Q ss_pred             CCceeeecCCCCCCCHHHHHHHhhcCCCcceeEEeecC
Q 030532          137 NDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVSFCF  174 (175)
Q Consensus       137 ndfrIFVGNLs~dVTDe~L~~aFskYGSV~~AKVV~D~  174 (175)
                      ...+||||||+.++|+++|+++|++||.|.+++|+.|.
T Consensus         3 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~   40 (88)
T 4a8x_A            3 KPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVER   40 (88)
T ss_dssp             CCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEET
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCC
Confidence            45789999999999999999999999999999998874

>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*

Probab=98.59  E-value=4.2e-08  Score=65.27  Aligned_cols=38  Identities=29%  Similarity=0.471  Sum_probs=35.7

Q ss_pred             CCCceeeecCCCCCCCHHHHHHHhhcCCCcceeEEeec
Q 030532          136 ENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVSFC  173 (175)
Q Consensus       136 ~ndfrIFVGNLs~dVTDe~L~~aFskYGSV~~AKVV~D  173 (175)
                      .+..+||||||+.++++++|+++|++||.|.+++|+.|
T Consensus         5 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~   42 (85)
T 3mdf_A            5 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLD   42 (85)
T ss_dssp             CCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEE
T ss_pred             CCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEEC
Confidence            46789999999999999999999999999999999887

>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=98.58  E-value=5.2e-08  Score=67.53  Aligned_cols=39  Identities=21%  Similarity=0.189  Sum_probs=36.2

Q ss_pred             CCCceeeecCCCCCCCHHHHHHHhhcCCCcceeEEeecC
Q 030532          136 ENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVSFCF  174 (175)
Q Consensus       136 ~ndfrIFVGNLs~dVTDe~L~~aFskYGSV~~AKVV~D~  174 (175)
                      .+..+||||||++++|+++|+++|++||.|.+++|+.|.
T Consensus        13 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~   51 (103)
T 2cqg_A           13 QKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDL   51 (103)
T ss_dssp             CCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECS
T ss_pred             CCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecC
Confidence            456789999999999999999999999999999999874

>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1

Probab=98.58  E-value=9.6e-08  Score=65.95  Aligned_cols=39  Identities=18%  Similarity=0.324  Sum_probs=35.5

Q ss_pred             CCCCceeeecCCCCCCCHHHHHHHhhcCCCcceeEEeec
Q 030532          135 PENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVSFC  173 (175)
Q Consensus       135 ~~ndfrIFVGNLs~dVTDe~L~~aFskYGSV~~AKVV~D  173 (175)
                      ..+..+||||||+.++|+++|+++|++||.|.+++|+.|
T Consensus        12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~   50 (99)
T 2cpj_A           12 FTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKD   50 (99)
T ss_dssp             CCCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETT
T ss_pred             CCCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecC
Confidence            356789999999999999999999999999999998765

>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.58  E-value=4.2e-08  Score=66.73  Aligned_cols=39  Identities=18%  Similarity=0.279  Sum_probs=36.0

Q ss_pred             CCCCceeeecCCCCCCCHHHHHHHhhcCCCcceeEEeec
Q 030532          135 PENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVSFC  173 (175)
Q Consensus       135 ~~ndfrIFVGNLs~dVTDe~L~~aFskYGSV~~AKVV~D  173 (175)
                      +.+..+||||||++++|+++|+++|++||.|.+++|+.|
T Consensus         6 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~~   44 (90)
T 2dnp_A            6 SGNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVKD   44 (90)
T ss_dssp             SCCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEECSS
T ss_pred             CCCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEECC
Confidence            457789999999999999999999999999999999866

>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=98.58  E-value=7.2e-08  Score=68.58  Aligned_cols=41  Identities=17%  Similarity=0.189  Sum_probs=37.0

Q ss_pred             CCCCCceeeecCCCCCCCHHHHHHHhhcCCCcceeEEeecC
Q 030532          134 WPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVSFCF  174 (175)
Q Consensus       134 w~~ndfrIFVGNLs~dVTDe~L~~aFskYGSV~~AKVV~D~  174 (175)
                      .+.+..+||||||+.++|+++|+++|++||.|.+++|+.|.
T Consensus        25 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~   65 (109)
T 2err_A           25 NKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNE   65 (109)
T ss_dssp             CTTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBT
T ss_pred             CCCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECC
Confidence            34567799999999999999999999999999999998873

>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A

Probab=98.58  E-value=6.5e-08  Score=65.41  Aligned_cols=38  Identities=13%  Similarity=0.206  Sum_probs=35.3

Q ss_pred             CCCceeeecCCCCCCCHHHHHHHhhcCCCcceeEEeec
Q 030532          136 ENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVSFC  173 (175)
Q Consensus       136 ~ndfrIFVGNLs~dVTDe~L~~aFskYGSV~~AKVV~D  173 (175)
                      ....+||||||+.++|+++|+++|++||.|..++|+.|
T Consensus         6 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~   43 (92)
T 2dgv_A            6 SGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME   43 (92)
T ss_dssp             SSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEES
T ss_pred             CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcc
Confidence            46789999999999999999999999999999999875

>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=98.58  E-value=4.9e-08  Score=67.71  Aligned_cols=39  Identities=15%  Similarity=0.212  Sum_probs=36.3

Q ss_pred             CCCceeeecCCCCCCCHHHHHHHhhcCCCcceeEEeecC
Q 030532          136 ENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVSFCF  174 (175)
Q Consensus       136 ~ndfrIFVGNLs~dVTDe~L~~aFskYGSV~~AKVV~D~  174 (175)
                      ....+||||||++++|+++|+++|++||.|.+++|+.|.
T Consensus        13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~   51 (105)
T 1x5u_A           13 NQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDR   51 (105)
T ss_dssp             CTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCS
T ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecC
Confidence            467899999999999999999999999999999998874

>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A

Probab=98.58  E-value=3.2e-08  Score=64.84  Aligned_cols=35  Identities=20%  Similarity=0.338  Sum_probs=33.0

Q ss_pred             eeeecCCCCCCCHHHHHHHhhcCCCcceeEEeecC
Q 030532          140 RLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVSFCF  174 (175)
Q Consensus       140 rIFVGNLs~dVTDe~L~~aFskYGSV~~AKVV~D~  174 (175)
                      +||||||++++|+++|+++|++||.|.+++|+.|.
T Consensus         1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~   35 (75)
T 2mss_A            1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDK   35 (75)
T ss_dssp             CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCS
T ss_pred             CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecC
Confidence            69999999999999999999999999999998874

>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A

Probab=98.57  E-value=5.3e-08  Score=72.03  Aligned_cols=42  Identities=24%  Similarity=0.358  Sum_probs=37.9

Q ss_pred             CCCCCCCceeeecCCCCCCCHHHHHHHhhcCCCcceeEEeec
Q 030532          132 AEWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVSFC  173 (175)
Q Consensus       132 ~Ew~~ndfrIFVGNLs~dVTDe~L~~aFskYGSV~~AKVV~D  173 (175)
                      ........+||||||++++|+++|+++|++||.|.+++|+.|
T Consensus        67 ~~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~  108 (150)
T 2i2y_A           67 RDSCPLDCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARN  108 (150)
T ss_dssp             SSSSTTSCEEEEESCCSCCSCHHHHHHHHHHSCEEEEEECSS
T ss_pred             ccCCCCCCEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEeeC
Confidence            344567789999999999999999999999999999999887

>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=98.57  E-value=3.7e-08  Score=68.29  Aligned_cols=39  Identities=15%  Similarity=0.188  Sum_probs=36.0

Q ss_pred             CCCceeeecCCCCCCCHHHHH----HHhhcCCCcceeEEeecC
Q 030532          136 ENDYRLFCGDLGNEVNDDVLS----KAFSRFPSFNMAKVSFCF  174 (175)
Q Consensus       136 ~ndfrIFVGNLs~dVTDe~L~----~aFskYGSV~~AKVV~D~  174 (175)
                      .+..+||||||++++++++|+    ++|++||.|.+++|+.|.
T Consensus         7 ~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~   49 (96)
T 2dgx_A            7 GNGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHT   49 (96)
T ss_dssp             SSCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCC
T ss_pred             CCCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCC
Confidence            356799999999999999999    999999999999999874

>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.57  E-value=6.8e-08  Score=65.66  Aligned_cols=39  Identities=18%  Similarity=0.264  Sum_probs=36.1

Q ss_pred             CCCceeeecCCCCCCCHHHHHHHhhcCCCcceeEEeecC
Q 030532          136 ENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVSFCF  174 (175)
Q Consensus       136 ~ndfrIFVGNLs~dVTDe~L~~aFskYGSV~~AKVV~D~  174 (175)
                      +...+||||||+.++|+++|+++|++||.|.+++|+.|.
T Consensus         3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~   41 (95)
T 2dnz_A            3 SGSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDS   41 (95)
T ss_dssp             SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCS
T ss_pred             CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecC
Confidence            456799999999999999999999999999999999874

>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}

Probab=98.57  E-value=4.6e-08  Score=69.34  Aligned_cols=39  Identities=28%  Similarity=0.244  Sum_probs=36.1

Q ss_pred             CCCceeeecCCCCCCCHHHHHHHhhcCCCcceeEEeecC
Q 030532          136 ENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVSFCF  174 (175)
Q Consensus       136 ~ndfrIFVGNLs~dVTDe~L~~aFskYGSV~~AKVV~D~  174 (175)
                      .+..+||||||++++|+++|+++|++||.|.+++|+.|.
T Consensus        38 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~   76 (118)
T 2khc_A           38 PEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDK   76 (118)
T ss_dssp             CCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCS
T ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCC
Confidence            467899999999999999999999999999999999873

>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=98.57  E-value=5.8e-08  Score=73.09  Aligned_cols=37  Identities=8%  Similarity=-0.092  Sum_probs=34.5

Q ss_pred             CCceeeecCCCCCCCHHHHHHHhhcCCCcceeEEeec
Q 030532          137 NDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVSFC  173 (175)
Q Consensus       137 ndfrIFVGNLs~dVTDe~L~~aFskYGSV~~AKVV~D  173 (175)
                      ...+||||||++++||++|+++|++||.|.+++|+.|
T Consensus        30 ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~   66 (119)
T 2ad9_A           30 PSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG   66 (119)
T ss_dssp             CCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGG
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC
Confidence            4568999999999999999999999999999999876

>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=98.57  E-value=5.4e-08  Score=66.29  Aligned_cols=38  Identities=24%  Similarity=0.397  Sum_probs=35.6

Q ss_pred             CCCceeeecCCCCCCCHHHHHHHhhcCCCccee-EEeec
Q 030532          136 ENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMA-KVSFC  173 (175)
Q Consensus       136 ~ndfrIFVGNLs~dVTDe~L~~aFskYGSV~~A-KVV~D  173 (175)
                      ....+||||||+.++|+++|+++|++||.|.++ +|+.|
T Consensus         3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~   41 (96)
T 1x5t_A            3 SGSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRD   41 (96)
T ss_dssp             SCCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCC
T ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEc
Confidence            467799999999999999999999999999999 99987

>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1

Probab=98.57  E-value=2.6e-08  Score=72.62  Aligned_cols=38  Identities=8%  Similarity=-0.087  Sum_probs=35.2

Q ss_pred             CCceeeecCCCC-CCCHHHHHHHhhcCCCcceeEEeecC
Q 030532          137 NDYRLFCGDLGN-EVNDDVLSKAFSRFPSFNMAKVSFCF  174 (175)
Q Consensus       137 ndfrIFVGNLs~-dVTDe~L~~aFskYGSV~~AKVV~D~  174 (175)
                      ...+||||||++ ++||++|+++|++||.|.+++|+.|.
T Consensus        14 p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~k   52 (102)
T 1x4d_A           14 TRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNKI   52 (102)
T ss_dssp             CCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSSS
T ss_pred             CCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcCC
Confidence            567899999999 99999999999999999999998763

>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A

Probab=98.57  E-value=5.9e-08  Score=68.48  Aligned_cols=39  Identities=28%  Similarity=0.509  Sum_probs=36.5

Q ss_pred             CCCceeeecCCCCCCCHHHHHHHhhcCCCcceeEEeecC
Q 030532          136 ENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVSFCF  174 (175)
Q Consensus       136 ~ndfrIFVGNLs~dVTDe~L~~aFskYGSV~~AKVV~D~  174 (175)
                      .+..+||||||++++|+++|+++|++||.|.+++|+.|.
T Consensus        13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~   51 (115)
T 2dgo_A           13 SNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDM   51 (115)
T ss_dssp             TTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECT
T ss_pred             CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcC
Confidence            467899999999999999999999999999999999874

>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=98.56  E-value=4.8e-08  Score=68.79  Aligned_cols=41  Identities=15%  Similarity=0.039  Sum_probs=36.1

Q ss_pred             CCCCCceeeecCCCCCCCHHHHHHHhhcCCCcce-eEEeecC
Q 030532          134 WPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNM-AKVSFCF  174 (175)
Q Consensus       134 w~~ndfrIFVGNLs~dVTDe~L~~aFskYGSV~~-AKVV~D~  174 (175)
                      ...+..+||||||++++|+++|+++|+.||.|.+ ++|+.|.
T Consensus        11 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~~   52 (104)
T 1wg5_A           11 DTANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDF   52 (104)
T ss_dssp             SCSCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBCS
T ss_pred             CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEECC
Confidence            3456789999999999999999999999999987 7787774

>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1

Probab=98.56  E-value=4.2e-08  Score=64.17  Aligned_cols=35  Identities=20%  Similarity=0.266  Sum_probs=33.2

Q ss_pred             eeeecCCCCCCCHHHHHHHhhcCCCcceeEEeecC
Q 030532          140 RLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVSFCF  174 (175)
Q Consensus       140 rIFVGNLs~dVTDe~L~~aFskYGSV~~AKVV~D~  174 (175)
                      +||||||+.++|+++|+++|++||.|.+++|+.|.
T Consensus         2 ~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~   36 (77)
T 1uaw_A            2 KMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDP   36 (77)
T ss_dssp             CEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCC
T ss_pred             EEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCC
Confidence            69999999999999999999999999999998874

>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*

Probab=98.56  E-value=1e-07  Score=84.16  Aligned_cols=38  Identities=11%  Similarity=0.244  Sum_probs=35.2

Q ss_pred             CCceeeecCCCCCCCHHHHHHHhhcCCCcceeEEeecC
Q 030532          137 NDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVSFCF  174 (175)
Q Consensus       137 ndfrIFVGNLs~dVTDe~L~~aFskYGSV~~AKVV~D~  174 (175)
                      ...+||||||+++||+++|.++|++||.|..++|++|.
T Consensus       101 ~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~  138 (437)
T 3pgw_S          101 AFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSK  138 (437)
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccC
Confidence            34689999999999999999999999999999999873

>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=98.56  E-value=6.3e-08  Score=68.61  Aligned_cols=40  Identities=25%  Similarity=0.238  Sum_probs=36.8

Q ss_pred             CCCCceeeecCCCCCCCHHHHHHHhhcCCCcceeEEeecC
Q 030532          135 PENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVSFCF  174 (175)
Q Consensus       135 ~~ndfrIFVGNLs~dVTDe~L~~aFskYGSV~~AKVV~D~  174 (175)
                      +....+||||||++++|+++|+++|++||.|.+++|+.|.
T Consensus        14 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~   53 (116)
T 2cqd_A           14 DTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDR   53 (116)
T ss_dssp             SCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCS
T ss_pred             CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcC
Confidence            4567899999999999999999999999999999999873

>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}

Probab=98.56  E-value=2e-08  Score=70.12  Aligned_cols=44  Identities=14%  Similarity=0.190  Sum_probs=33.4

Q ss_pred             CCCCCCCCCceeeecCCCCCCCHHHHHHHhhcCCCcceeEEeecC
Q 030532          130 TLAEWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVSFCF  174 (175)
Q Consensus       130 tL~Ew~~ndfrIFVGNLs~dVTDe~L~~aFskYGSV~~AKVV~D~  174 (175)
                      ....-.....+||||||++++|+++|+++|++|| |.+++|+.|.
T Consensus        11 ~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~   54 (100)
T 2j76_E           11 RSRLPKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREP   54 (100)
T ss_dssp             ---------CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCT
T ss_pred             CCcCCCCCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecC
Confidence            3334455788999999999999999999999999 9999998874

>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=98.56  E-value=1e-07  Score=69.01  Aligned_cols=42  Identities=7%  Similarity=-0.075  Sum_probs=37.6

Q ss_pred             CCCCCCceeeecCCCCCCCHHHHHHHhhcCCC---cceeEEeecC
Q 030532          133 EWPENDYRLFCGDLGNEVNDDVLSKAFSRFPS---FNMAKVSFCF  174 (175)
Q Consensus       133 Ew~~ndfrIFVGNLs~dVTDe~L~~aFskYGS---V~~AKVV~D~  174 (175)
                      ..+.+..+||||||++++|+++|+++|+.||.   |.+++|++|.
T Consensus        12 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~   56 (118)
T 2db1_A           12 PEGGEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTR   56 (118)
T ss_dssp             SCBCCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECS
T ss_pred             CCCCCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECC
Confidence            33457789999999999999999999999999   8999999874

>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.56  E-value=6.8e-08  Score=65.90  Aligned_cols=39  Identities=10%  Similarity=0.204  Sum_probs=35.6

Q ss_pred             CCCCceeeecCCCCCCCHHHHHHHhhcCCCcceeEEeec
Q 030532          135 PENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVSFC  173 (175)
Q Consensus       135 ~~ndfrIFVGNLs~dVTDe~L~~aFskYGSV~~AKVV~D  173 (175)
                      +....+||||||++++|+++|+++|++||.|.+++|+.|
T Consensus         7 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~~~   45 (92)
T 2dgt_A            7 GKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVKD   45 (92)
T ss_dssp             CCSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEECSS
T ss_pred             CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEECC
Confidence            346789999999999999999999999999999998865

>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}

Probab=98.56  E-value=4.9e-08  Score=69.08  Aligned_cols=42  Identities=12%  Similarity=-0.055  Sum_probs=37.2

Q ss_pred             CCCCCCceeeecCCCCCCCHHHHHHHhhcCCC---cceeEEeecC
Q 030532          133 EWPENDYRLFCGDLGNEVNDDVLSKAFSRFPS---FNMAKVSFCF  174 (175)
Q Consensus       133 Ew~~ndfrIFVGNLs~dVTDe~L~~aFskYGS---V~~AKVV~D~  174 (175)
                      +.....++||||||++++|+++|+++|+.||.   |.+++|++|.
T Consensus         6 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~   50 (107)
T 2lmi_A            6 EEVDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNR   50 (107)
T ss_dssp             CCCSSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCT
T ss_pred             CCCCCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECC
Confidence            34457889999999999999999999999887   8999999874

>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=98.56  E-value=5.9e-08  Score=66.98  Aligned_cols=39  Identities=28%  Similarity=0.462  Sum_probs=36.3

Q ss_pred             CCCCceeeecCCCCCCCHHHHHHHhhcCCCcceeEEeec
Q 030532          135 PENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVSFC  173 (175)
Q Consensus       135 ~~ndfrIFVGNLs~dVTDe~L~~aFskYGSV~~AKVV~D  173 (175)
                      ..+..+||||||++++|+++|+++|++||.|.+++|+.|
T Consensus         9 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~   47 (102)
T 2cqb_A            9 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLD   47 (102)
T ss_dssp             CCCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCC
T ss_pred             CCCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEec
Confidence            456789999999999999999999999999999999887

>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1

Probab=98.55  E-value=5.9e-08  Score=66.65  Aligned_cols=39  Identities=21%  Similarity=0.280  Sum_probs=36.1

Q ss_pred             CCCceeeecCCCCCCCHHHHHHHhhcCCCcceeEEeecC
Q 030532          136 ENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVSFCF  174 (175)
Q Consensus       136 ~ndfrIFVGNLs~dVTDe~L~~aFskYGSV~~AKVV~D~  174 (175)
                      .+..+||||||++++|+++|+++|++||.|.+++|+.|.
T Consensus         6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~   44 (99)
T 1whw_A            6 SGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDS   44 (99)
T ss_dssp             CSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCT
T ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecC
Confidence            456799999999999999999999999999999998874

>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=98.55  E-value=7.5e-08  Score=67.85  Aligned_cols=39  Identities=10%  Similarity=0.168  Sum_probs=36.2

Q ss_pred             CCCceeeecCCCCCCCHHHHHHHhhcCCCcceeEEeecC
Q 030532          136 ENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVSFCF  174 (175)
Q Consensus       136 ~ndfrIFVGNLs~dVTDe~L~~aFskYGSV~~AKVV~D~  174 (175)
                      .+..+||||||++++|+++|+++|++||.|.+++|+.|.
T Consensus        23 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~   61 (114)
T 1x5o_A           23 QDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDS   61 (114)
T ss_dssp             CCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECS
T ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC
Confidence            456799999999999999999999999999999999874

>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A

Probab=98.55  E-value=8.9e-08  Score=66.58  Aligned_cols=40  Identities=23%  Similarity=0.330  Sum_probs=36.8

Q ss_pred             CCCCceeeecCCCCCCCHHHHHHHhhcCCCcceeEEeecC
Q 030532          135 PENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVSFCF  174 (175)
Q Consensus       135 ~~ndfrIFVGNLs~dVTDe~L~~aFskYGSV~~AKVV~D~  174 (175)
                      .....+||||||++++|+++|+++|++||.|.+++|+.|.
T Consensus        26 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~   65 (107)
T 3ulh_A           26 VETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDR   65 (107)
T ss_dssp             CCCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECT
T ss_pred             CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC
Confidence            3567899999999999999999999999999999999874

>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1

Probab=98.55  E-value=8.6e-08  Score=66.46  Aligned_cols=39  Identities=10%  Similarity=0.250  Sum_probs=36.3

Q ss_pred             CCCCceeeecCCCCCCCHHHHHHHhhcCCCcceeEEeec
Q 030532          135 PENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVSFC  173 (175)
Q Consensus       135 ~~ndfrIFVGNLs~dVTDe~L~~aFskYGSV~~AKVV~D  173 (175)
                      +....+||||||++++|+++|+++|++||.|.+++|+.|
T Consensus        12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~   50 (107)
T 2cph_A           12 KQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKK   50 (107)
T ss_dssp             SSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCC
T ss_pred             CCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecC
Confidence            456789999999999999999999999999999999887

>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}

Probab=98.54  E-value=4.3e-08  Score=71.62  Aligned_cols=39  Identities=10%  Similarity=0.106  Sum_probs=35.4

Q ss_pred             CCCceeeecCCCCCCCHHHHHHHhhcCCCcce--eEEeecC
Q 030532          136 ENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNM--AKVSFCF  174 (175)
Q Consensus       136 ~ndfrIFVGNLs~dVTDe~L~~aFskYGSV~~--AKVV~D~  174 (175)
                      ....+||||||++++||++|+++|++||.|..  ++|++|.
T Consensus        21 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~   61 (131)
T 2m2b_A           21 NANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDK   61 (131)
T ss_dssp             CCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCS
T ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcC
Confidence            45568999999999999999999999999966  9999986

>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=98.54  E-value=6e-08  Score=66.91  Aligned_cols=39  Identities=23%  Similarity=0.380  Sum_probs=36.3

Q ss_pred             CCCceeeecCCCCCCCHHHHHHHhhcCCCcceeEEeecC
Q 030532          136 ENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVSFCF  174 (175)
Q Consensus       136 ~ndfrIFVGNLs~dVTDe~L~~aFskYGSV~~AKVV~D~  174 (175)
                      .+..+||||||+.++|+++|+++|++||.|.+++|+.|.
T Consensus        10 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~   48 (102)
T 1x5s_A           10 SDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDR   48 (102)
T ss_dssp             CCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCS
T ss_pred             CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCC
Confidence            467899999999999999999999999999999999874

>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.54  E-value=6.9e-08  Score=66.93  Aligned_cols=38  Identities=32%  Similarity=0.454  Sum_probs=35.5

Q ss_pred             CCCceeeecCCCCCCCHHHHHHHhhcCCCcceeEEeec
Q 030532          136 ENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVSFC  173 (175)
Q Consensus       136 ~ndfrIFVGNLs~dVTDe~L~~aFskYGSV~~AKVV~D  173 (175)
                      .+..+||||||++++|+++|+++|++||.|.+++|+.|
T Consensus        13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~   50 (103)
T 2d9p_A           13 YQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMME   50 (103)
T ss_dssp             SSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEEC
T ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC
Confidence            46779999999999999999999999999999999876

>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=98.54  E-value=1.1e-07  Score=64.35  Aligned_cols=40  Identities=15%  Similarity=0.181  Sum_probs=36.6

Q ss_pred             CCCCceeeecCCCCCCCHHHHHHHhhcCCCcceeEEeecC
Q 030532          135 PENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVSFCF  174 (175)
Q Consensus       135 ~~ndfrIFVGNLs~dVTDe~L~~aFskYGSV~~AKVV~D~  174 (175)
                      +....+||||||+.++|+++|+++|++||.|.+++|+.|.
T Consensus        12 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~   51 (95)
T 2cqc_A           12 PDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQ   51 (95)
T ss_dssp             CCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECS
T ss_pred             CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcC
Confidence            4567889999999999999999999999999999998874

>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}

Probab=98.54  E-value=4.6e-08  Score=69.78  Aligned_cols=35  Identities=14%  Similarity=0.129  Sum_probs=32.3

Q ss_pred             eeeecCCCCCCCHHHHHHHhhcCCC--cceeEEeecC
Q 030532          140 RLFCGDLGNEVNDDVLSKAFSRFPS--FNMAKVSFCF  174 (175)
Q Consensus       140 rIFVGNLs~dVTDe~L~~aFskYGS--V~~AKVV~D~  174 (175)
                      +||||||++++|+++|+++|++||.  +.+++|+.|.
T Consensus        11 tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~   47 (95)
T 2lkz_A           11 TIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDK   47 (95)
T ss_dssp             EEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCS
T ss_pred             EEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecC
Confidence            6999999999999999999999994  6789999884

>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.54  E-value=2e-07  Score=64.27  Aligned_cols=39  Identities=10%  Similarity=0.061  Sum_probs=36.1

Q ss_pred             CCCceeeecCCCCCCCHHHHHHHhhcCCCcceeEEeecC
Q 030532          136 ENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVSFCF  174 (175)
Q Consensus       136 ~ndfrIFVGNLs~dVTDe~L~~aFskYGSV~~AKVV~D~  174 (175)
                      .+..+||||||+.++|+++|+++|++||.|.+++|+.|.
T Consensus        15 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~   53 (100)
T 2do4_A           15 LEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNR   53 (100)
T ss_dssp             CCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT
T ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC
Confidence            456789999999999999999999999999999999874

>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=98.53  E-value=6.8e-08  Score=69.74  Aligned_cols=38  Identities=13%  Similarity=-0.045  Sum_probs=34.5

Q ss_pred             CCCceeeecCCCCCCCHHHHHHHhhcCCCcceeEEeec
Q 030532          136 ENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVSFC  173 (175)
Q Consensus       136 ~ndfrIFVGNLs~dVTDe~L~~aFskYGSV~~AKVV~D  173 (175)
                      ....+||||||++++||++|+++|++||.|.+++|+.|
T Consensus        13 ~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~   50 (101)
T 2cq1_A           13 APSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG   50 (101)
T ss_dssp             SCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT
T ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC
Confidence            34568999999999999999999999999999988765

>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.53  E-value=1.1e-07  Score=63.37  Aligned_cols=39  Identities=21%  Similarity=0.348  Sum_probs=35.5

Q ss_pred             CCCCceeeecCCCCCCCHHHHHHHhhcCCCcceeEEeec
Q 030532          135 PENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVSFC  173 (175)
Q Consensus       135 ~~ndfrIFVGNLs~dVTDe~L~~aFskYGSV~~AKVV~D  173 (175)
                      +....+||||||+.++|+++|+++|++||.|.+++|+.+
T Consensus         9 ~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~~   47 (85)
T 2ytc_A            9 DKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQR   47 (85)
T ss_dssp             CSSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEGG
T ss_pred             CCCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEECC
Confidence            456789999999999999999999999999999998764

>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C

Probab=98.53  E-value=6.3e-08  Score=78.17  Aligned_cols=41  Identities=17%  Similarity=0.131  Sum_probs=34.6

Q ss_pred             CCCCCceeeecCCCCCCCHHHHHHHhhcCC--CcceeEEeecC
Q 030532          134 WPENDYRLFCGDLGNEVNDDVLSKAFSRFP--SFNMAKVSFCF  174 (175)
Q Consensus       134 w~~ndfrIFVGNLs~dVTDe~L~~aFskYG--SV~~AKVV~D~  174 (175)
                      .+....+||||||++++||++|+++|++||  .|.+++|++|.
T Consensus        64 ~~~~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~  106 (229)
T 3q2s_C           64 YTGKRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENR  106 (229)
T ss_dssp             -----CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECT
T ss_pred             CCCCccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecC
Confidence            344677999999999999999999999999  99999999984

>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=98.52  E-value=7.8e-08  Score=68.40  Aligned_cols=39  Identities=8%  Similarity=0.008  Sum_probs=35.0

Q ss_pred             CCCCceeeecCCCCCCCHHHHHHHhhcCCCcceeEEeecC
Q 030532          135 PENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVSFCF  174 (175)
Q Consensus       135 ~~ndfrIFVGNLs~dVTDe~L~~aFskYGSV~~AKVV~D~  174 (175)
                      +....+||||||++++|+++|+++|+.|| +.+++|++|.
T Consensus        12 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G-~~~v~i~~d~   50 (102)
T 1wez_A           12 STTGHCVHMRGLPYRATENDIYNFFSPLN-PMRVHIEIGP   50 (102)
T ss_dssp             CSSSCEEEEESCCTTCCHHHHHHSSCSCC-CSEEEEEESS
T ss_pred             CCCCCEEEEeCCCCCCCHHHHHHHHHHcC-ceEEEEEECC
Confidence            35678999999999999999999999999 5599999885

>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.52  E-value=9.7e-08  Score=64.79  Aligned_cols=39  Identities=10%  Similarity=0.170  Sum_probs=36.1

Q ss_pred             CCCceeeecCCCCCCCHHHHHHHhhcCCCcceeEEeecC
Q 030532          136 ENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVSFCF  174 (175)
Q Consensus       136 ~ndfrIFVGNLs~dVTDe~L~~aFskYGSV~~AKVV~D~  174 (175)
                      ....+||||||+.++++++|+++|++||.|.+++|+.|.
T Consensus        14 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~   52 (94)
T 2e5h_A           14 PSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDK   52 (94)
T ss_dssp             CCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCS
T ss_pred             CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCC
Confidence            467799999999999999999999999999999998873

>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=98.52  E-value=6.5e-08  Score=67.05  Aligned_cols=39  Identities=13%  Similarity=0.186  Sum_probs=36.1

Q ss_pred             CCCceeeecCCCCCCCHHHHHHHhhcCCCcceeEEeecC
Q 030532          136 ENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVSFCF  174 (175)
Q Consensus       136 ~ndfrIFVGNLs~dVTDe~L~~aFskYGSV~~AKVV~D~  174 (175)
                      ....+||||||+.++|+++|+++|++||.|.+++|+.|.
T Consensus        13 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~   51 (103)
T 2cq0_A           13 DDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDK   51 (103)
T ss_dssp             SSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECS
T ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecC
Confidence            457889999999999999999999999999999999873

>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A

Probab=98.52  E-value=8.4e-08  Score=64.30  Aligned_cols=37  Identities=14%  Similarity=0.181  Sum_probs=34.6

Q ss_pred             CceeeecCCCCCCCHHHHHHHhhcCCCcceeEEeecC
Q 030532          138 DYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVSFCF  174 (175)
Q Consensus       138 dfrIFVGNLs~dVTDe~L~~aFskYGSV~~AKVV~D~  174 (175)
                      ..+||||||+.++|+++|+++|++||.|.+++|+.|.
T Consensus         6 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~   42 (89)
T 3ucg_A            6 ARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDK   42 (89)
T ss_dssp             HTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESC
T ss_pred             CCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecC
Confidence            4589999999999999999999999999999999874

>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1

Probab=98.52  E-value=9e-08  Score=69.56  Aligned_cols=40  Identities=18%  Similarity=0.251  Sum_probs=36.6

Q ss_pred             CCCCceeeecCCCCCCCHHHHHHHhhcCCCcceeEEeecC
Q 030532          135 PENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVSFCF  174 (175)
Q Consensus       135 ~~ndfrIFVGNLs~dVTDe~L~~aFskYGSV~~AKVV~D~  174 (175)
                      +....+||||||+.++|+++|+++|++||.|.+++|+.|.
T Consensus        39 ~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~   78 (139)
T 1u6f_A           39 PDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDR   78 (139)
T ss_dssp             TTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEET
T ss_pred             CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcC
Confidence            3456789999999999999999999999999999999874

>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}

Probab=98.52  E-value=7.1e-08  Score=73.93  Aligned_cols=39  Identities=10%  Similarity=0.051  Sum_probs=34.6

Q ss_pred             CCCceeeecCCCCCCCHHHHHHHhhcCC--CcceeEEeecC
Q 030532          136 ENDYRLFCGDLGNEVNDDVLSKAFSRFP--SFNMAKVSFCF  174 (175)
Q Consensus       136 ~ndfrIFVGNLs~dVTDe~L~~aFskYG--SV~~AKVV~D~  174 (175)
                      ....+||||||++++||++|+++|++||  .|.+++|+.|.
T Consensus        53 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~   93 (156)
T 3n9u_C           53 NRRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENR   93 (156)
T ss_dssp             ---CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECT
T ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecC
Confidence            3568999999999999999999999999  99999999884

>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}

Probab=98.52  E-value=2.2e-07  Score=66.66  Aligned_cols=39  Identities=23%  Similarity=0.375  Sum_probs=36.0

Q ss_pred             CCCceeeecCCCCCCCHHHHHHHhhcCCCcceeEEeecC
Q 030532          136 ENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVSFCF  174 (175)
Q Consensus       136 ~ndfrIFVGNLs~dVTDe~L~~aFskYGSV~~AKVV~D~  174 (175)
                      ....+||||||+.++++++|+++|++||.|.+++|+.|.
T Consensus        33 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~   71 (124)
T 2kt5_A           33 ETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR   71 (124)
T ss_dssp             SSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCS
T ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECC
Confidence            456799999999999999999999999999999999874

>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=98.52  E-value=7.1e-08  Score=67.17  Aligned_cols=38  Identities=16%  Similarity=0.319  Sum_probs=35.0

Q ss_pred             CCCceeeecCCCCCCCHHHHHHHhhcCCCcceeEEeecC
Q 030532          136 ENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVSFCF  174 (175)
Q Consensus       136 ~ndfrIFVGNLs~dVTDe~L~~aFskYGSV~~AKVV~D~  174 (175)
                      ....+||||||++++|+++|+++|++|| |.+++|+.|.
T Consensus        13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~   50 (104)
T 1wi8_A           13 SPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREP   50 (104)
T ss_dssp             SSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCS
T ss_pred             CCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCC
Confidence            4568999999999999999999999999 9999999874

>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A

Probab=98.52  E-value=3.6e-08  Score=70.95  Aligned_cols=38  Identities=13%  Similarity=0.003  Sum_probs=33.6

Q ss_pred             CCCceeeecCCCCCCCHHHHHHHhhcCCCcceeEEeec
Q 030532          136 ENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVSFC  173 (175)
Q Consensus       136 ~ndfrIFVGNLs~dVTDe~L~~aFskYGSV~~AKVV~D  173 (175)
                      ...++||||||++++|+++|.++|++||.|..++|+.|
T Consensus        14 r~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~   51 (115)
T 3beg_B           14 RSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD   51 (115)
T ss_dssp             ---CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT
T ss_pred             CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC
Confidence            35789999999999999999999999999999999875

>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A

Probab=98.51  E-value=3.8e-08  Score=64.32  Aligned_cols=35  Identities=14%  Similarity=0.376  Sum_probs=32.8

Q ss_pred             eeeecCCCCCCCHHHHHHHhhcCCCcceeEEeecC
Q 030532          140 RLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVSFCF  174 (175)
Q Consensus       140 rIFVGNLs~dVTDe~L~~aFskYGSV~~AKVV~D~  174 (175)
                      +||||||+.++|+++|+++|++||.|.+++|+.|.
T Consensus         1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~   35 (75)
T 1iqt_A            1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDN   35 (75)
T ss_dssp             CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSC
T ss_pred             CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecC
Confidence            69999999999999999999999999999988763

>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.51  E-value=8.9e-08  Score=66.36  Aligned_cols=39  Identities=13%  Similarity=0.146  Sum_probs=35.8

Q ss_pred             CCCceeeecCCCCCCCHHHHHHHhhcCCCcceeEEeecC
Q 030532          136 ENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVSFCF  174 (175)
Q Consensus       136 ~ndfrIFVGNLs~dVTDe~L~~aFskYGSV~~AKVV~D~  174 (175)
                      ....+||||||++++|+++|+++|++||.|.+++|+.|.
T Consensus        11 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~   49 (103)
T 2dnm_A           11 DGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREP   49 (103)
T ss_dssp             SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCS
T ss_pred             CCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCC
Confidence            356799999999999999999999999999999998873

>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1

Probab=98.51  E-value=1.3e-07  Score=65.66  Aligned_cols=39  Identities=10%  Similarity=0.270  Sum_probs=35.8

Q ss_pred             CCCceeeecCCCCCCCHHHHHHHhhcCCCcceeEEeecC
Q 030532          136 ENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVSFCF  174 (175)
Q Consensus       136 ~ndfrIFVGNLs~dVTDe~L~~aFskYGSV~~AKVV~D~  174 (175)
                      ....+||||||+.++|+++|+++|++||.|.+++|+.|.
T Consensus        21 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~   59 (106)
T 1p27_B           21 VEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDR   59 (106)
T ss_dssp             TTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECT
T ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecC
Confidence            456789999999999999999999999999999999873

>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=98.50  E-value=8.7e-08  Score=67.70  Aligned_cols=38  Identities=16%  Similarity=0.209  Sum_probs=35.2

Q ss_pred             CCceeeecCCCCCCCHHHHHHHhhcCCCcceeEEeecC
Q 030532          137 NDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVSFCF  174 (175)
Q Consensus       137 ndfrIFVGNLs~dVTDe~L~~aFskYGSV~~AKVV~D~  174 (175)
                      ...+||||||++++|+++|+++|++||.|.+++|+.|.
T Consensus        24 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~   61 (114)
T 2cq4_A           24 DARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDR   61 (114)
T ss_dssp             HHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSC
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecC
Confidence            45689999999999999999999999999999999774

>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1

Probab=98.50  E-value=1.1e-07  Score=68.80  Aligned_cols=38  Identities=13%  Similarity=0.087  Sum_probs=34.4

Q ss_pred             CCCceeeecCCCCCCCHHHHHHHhhcCCCcceeEEeec
Q 030532          136 ENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVSFC  173 (175)
Q Consensus       136 ~ndfrIFVGNLs~dVTDe~L~~aFskYGSV~~AKVV~D  173 (175)
                      ....+||||||++++||++|+++|++||.|.+++|+.+
T Consensus        13 ~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~   50 (104)
T 1wex_A           13 SVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPF   50 (104)
T ss_dssp             CCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETT
T ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECC
Confidence            35678999999999999999999999999999988754

>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}

Probab=98.50  E-value=3.1e-08  Score=68.79  Aligned_cols=36  Identities=6%  Similarity=-0.044  Sum_probs=33.4

Q ss_pred             ceeeecCCCCCCCHHHHHHHhhcCC-CcceeEEeecC
Q 030532          139 YRLFCGDLGNEVNDDVLSKAFSRFP-SFNMAKVSFCF  174 (175)
Q Consensus       139 frIFVGNLs~dVTDe~L~~aFskYG-SV~~AKVV~D~  174 (175)
                      -.||||||++++||++|+++|++|| .|.+++|+.|.
T Consensus         2 ~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~   38 (91)
T 2lxi_A            2 NIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNK   38 (91)
T ss_dssp             CEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCS
T ss_pred             CEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecC
Confidence            3699999999999999999999999 79999999874

>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.50  E-value=6.3e-08  Score=66.15  Aligned_cols=40  Identities=10%  Similarity=0.082  Sum_probs=35.6

Q ss_pred             CCCCceeeecCCCCCCCHHHHHHHhhcCCCcceeE-EeecC
Q 030532          135 PENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAK-VSFCF  174 (175)
Q Consensus       135 ~~ndfrIFVGNLs~dVTDe~L~~aFskYGSV~~AK-VV~D~  174 (175)
                      .....+||||||++++|+++|+++|++||.|.+++ |+.|.
T Consensus        12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~   52 (96)
T 2e44_A           12 RQRIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDS   52 (96)
T ss_dssp             CCSCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSS
T ss_pred             CCCCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCC
Confidence            34578999999999999999999999999999995 87764

>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}

Probab=98.49  E-value=1.4e-07  Score=68.14  Aligned_cols=39  Identities=21%  Similarity=0.311  Sum_probs=36.1

Q ss_pred             CCCceeeecCCCCCCCHHHHHHHhhcCCCcceeEEeecC
Q 030532          136 ENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVSFCF  174 (175)
Q Consensus       136 ~ndfrIFVGNLs~dVTDe~L~~aFskYGSV~~AKVV~D~  174 (175)
                      .+..+||||||+.++|+++|+++|++||.|.+++|+.|.
T Consensus         5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~   43 (116)
T 2fy1_A            5 DHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR   43 (116)
T ss_dssp             CSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECST
T ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC
Confidence            456799999999999999999999999999999999874

>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B

Probab=98.49  E-value=9.1e-08  Score=65.73  Aligned_cols=37  Identities=11%  Similarity=0.115  Sum_probs=34.4

Q ss_pred             CceeeecCCCCCCCHHHHHHHhhcCCCcceeEEeecC
Q 030532          138 DYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVSFCF  174 (175)
Q Consensus       138 dfrIFVGNLs~dVTDe~L~~aFskYGSV~~AKVV~D~  174 (175)
                      ..+||||||+.++++++|+++|++||.|.+++|+.|.
T Consensus         2 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~   38 (96)
T 2x1f_A            2 SRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDP   38 (96)
T ss_dssp             CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCT
T ss_pred             CcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCC
Confidence            4589999999999999999999999999999998873

>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=98.49  E-value=1.1e-07  Score=67.39  Aligned_cols=38  Identities=18%  Similarity=0.220  Sum_probs=35.2

Q ss_pred             CCceeeecCCCCCCCHHHHHHHhhcCCCcceeEEeecC
Q 030532          137 NDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVSFCF  174 (175)
Q Consensus       137 ndfrIFVGNLs~dVTDe~L~~aFskYGSV~~AKVV~D~  174 (175)
                      +..+||||||++++|+++|+++|++||.|.+++|+.|.
T Consensus        26 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~   63 (116)
T 1x4b_A           26 QFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDP   63 (116)
T ss_dssp             HHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCT
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC
Confidence            35689999999999999999999999999999999873

>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=98.49  E-value=1.3e-07  Score=65.65  Aligned_cols=38  Identities=13%  Similarity=0.208  Sum_probs=34.9

Q ss_pred             CCCceeeecCCCCCCCHHHHHHHhhcCCCcceeEEeecC
Q 030532          136 ENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVSFCF  174 (175)
Q Consensus       136 ~ndfrIFVGNLs~dVTDe~L~~aFskYGSV~~AKVV~D~  174 (175)
                      ....+||||||++++|+++|+++|++|| |.+++|+.|.
T Consensus        13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~   50 (103)
T 2dng_A           13 EPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDK   50 (103)
T ss_dssp             SSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECS
T ss_pred             CCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecC
Confidence            4578999999999999999999999996 9999999874

>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}

Probab=98.48  E-value=8.7e-08  Score=66.19  Aligned_cols=34  Identities=21%  Similarity=0.452  Sum_probs=32.7

Q ss_pred             eeeecCCCCCCCHHHHHHHhhcCCCcceeEEeec
Q 030532          140 RLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVSFC  173 (175)
Q Consensus       140 rIFVGNLs~dVTDe~L~~aFskYGSV~~AKVV~D  173 (175)
                      +||||||+.++|+++|+++|++||.|.+++|+.|
T Consensus         2 ~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~   35 (101)
T 2hvz_A            2 KVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN   35 (101)
T ss_dssp             EEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS
T ss_pred             EEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC
Confidence            7999999999999999999999999999999876

>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1

Probab=98.47  E-value=1.5e-07  Score=64.79  Aligned_cols=38  Identities=26%  Similarity=0.388  Sum_probs=34.6

Q ss_pred             CCCceeeecCCCCCCCHHHHHHHhhcCCCcceeEEeec
Q 030532          136 ENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVSFC  173 (175)
Q Consensus       136 ~ndfrIFVGNLs~dVTDe~L~~aFskYGSV~~AKVV~D  173 (175)
                      ....+||||||+.++|+++|+++|++||.|.+++|+.+
T Consensus        15 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~   52 (97)
T 1why_A           15 NPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG   52 (97)
T ss_dssp             CCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS
T ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC
Confidence            35678999999999999999999999999999988765

>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*

Probab=98.47  E-value=1.4e-07  Score=67.53  Aligned_cols=40  Identities=10%  Similarity=0.267  Sum_probs=36.4

Q ss_pred             CCCCceeeecCCCCCCCHHHHHHHhhcCCCcceeEEeecC
Q 030532          135 PENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVSFCF  174 (175)
Q Consensus       135 ~~ndfrIFVGNLs~dVTDe~L~~aFskYGSV~~AKVV~D~  174 (175)
                      .....+||||||++++|+++|.++|++||.|.+++|+.|.
T Consensus        19 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~   58 (126)
T 3ex7_B           19 SVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDR   58 (126)
T ss_dssp             CSSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCT
T ss_pred             CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecC
Confidence            3457799999999999999999999999999999998874

>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=98.47  E-value=9.8e-08  Score=67.15  Aligned_cols=39  Identities=18%  Similarity=0.441  Sum_probs=35.8

Q ss_pred             CCCCceeeecCCCCCCCHHHHHHHhhcCCCcceeEEeec
Q 030532          135 PENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVSFC  173 (175)
Q Consensus       135 ~~ndfrIFVGNLs~dVTDe~L~~aFskYGSV~~AKVV~D  173 (175)
                      +....+||||||+.++|+++|+++|++||.|.+++|+.|
T Consensus        22 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~   60 (109)
T 1x4g_A           22 SPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE   60 (109)
T ss_dssp             CSSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT
T ss_pred             CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC
Confidence            456789999999999999999999999999999999875

>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1

Probab=98.47  E-value=9.3e-08  Score=65.52  Aligned_cols=38  Identities=8%  Similarity=-0.051  Sum_probs=35.0

Q ss_pred             CCCceeeecCCCCCCCHHHHHHHhhcCCCcceeEEeec
Q 030532          136 ENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVSFC  173 (175)
Q Consensus       136 ~ndfrIFVGNLs~dVTDe~L~~aFskYGSV~~AKVV~D  173 (175)
                      ....+||||||++++|+++|+++|++||.|..++++.|
T Consensus        13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~   50 (98)
T 2cqp_A           13 PGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKY   50 (98)
T ss_dssp             CSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEE
T ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEE
Confidence            46789999999999999999999999999998888876

>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.47  E-value=1.6e-07  Score=63.83  Aligned_cols=38  Identities=16%  Similarity=0.307  Sum_probs=34.4

Q ss_pred             CCCCceeeecCCCCCCCHHHHHHHhhcCCCcceeEEee
Q 030532          135 PENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVSF  172 (175)
Q Consensus       135 ~~ndfrIFVGNLs~dVTDe~L~~aFskYGSV~~AKVV~  172 (175)
                      +....+||||||+.++|+++|+++|++||.|.+++|+.
T Consensus         5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~   42 (90)
T 2dnq_A            5 SSGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDIIK   42 (90)
T ss_dssp             SSCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEET
T ss_pred             CCCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEC
Confidence            35678999999999999999999999999999988763

>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}

Probab=98.47  E-value=1.7e-07  Score=64.71  Aligned_cols=37  Identities=14%  Similarity=0.036  Sum_probs=33.7

Q ss_pred             CCCceeeecCCCCCCCHHHHHHHhhcCCCcceeEEee
Q 030532          136 ENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVSF  172 (175)
Q Consensus       136 ~ndfrIFVGNLs~dVTDe~L~~aFskYGSV~~AKVV~  172 (175)
                      ....+||||||+.++|+++|+++|++||.|.+++|+.
T Consensus        25 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~~   61 (101)
T 2la4_A           25 PRVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHYP   61 (101)
T ss_dssp             SSCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEET
T ss_pred             CCCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEec
Confidence            4567999999999999999999999999999998863

>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A

Probab=98.47  E-value=1.4e-07  Score=65.93  Aligned_cols=40  Identities=23%  Similarity=0.317  Sum_probs=34.0

Q ss_pred             CCCCCCCceeeecCCCC-CCCHHHHHHHhhcCCCcceeEEe
Q 030532          132 AEWPENDYRLFCGDLGN-EVNDDVLSKAFSRFPSFNMAKVS  171 (175)
Q Consensus       132 ~Ew~~ndfrIFVGNLs~-dVTDe~L~~aFskYGSV~~AKVV  171 (175)
                      ....+...+||||||++ ++++++|+++|++||.|.+++|.
T Consensus        16 ~~~~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~   56 (97)
T 2xnq_A           16 PRGSHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK   56 (97)
T ss_dssp             ---CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC
T ss_pred             cCCCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe
Confidence            34456788999999999 99999999999999999998874

>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A

Probab=98.47  E-value=8.4e-08  Score=65.23  Aligned_cols=38  Identities=8%  Similarity=-0.047  Sum_probs=34.0

Q ss_pred             CCCceeeecCCCCCCCHHHHHHHhhcCCCcceeEEeec
Q 030532          136 ENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVSFC  173 (175)
Q Consensus       136 ~ndfrIFVGNLs~dVTDe~L~~aFskYGSV~~AKVV~D  173 (175)
                      +...+||||||++++|+++|+++|++||.|..++++.|
T Consensus        13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~   50 (95)
T 2ek1_A           13 PGPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKY   50 (95)
T ss_dssp             --CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEE
T ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEe
Confidence            35689999999999999999999999999998888876

>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B

Probab=98.46  E-value=1.7e-07  Score=66.07  Aligned_cols=39  Identities=13%  Similarity=0.242  Sum_probs=35.3

Q ss_pred             CCCceeeecCCCCCCCHHHHHHHhhcCCCcceeEEeecC
Q 030532          136 ENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVSFCF  174 (175)
Q Consensus       136 ~ndfrIFVGNLs~dVTDe~L~~aFskYGSV~~AKVV~D~  174 (175)
                      ....+||||||++++|+++|+++|++||.|.+++|+.|.
T Consensus         6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~   44 (115)
T 3lqv_A            6 EVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNTP   44 (115)
T ss_dssp             TCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECST
T ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCC
Confidence            345689999999999999999999999999999998763

>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=98.46  E-value=3.4e-07  Score=64.20  Aligned_cols=39  Identities=15%  Similarity=0.382  Sum_probs=35.3

Q ss_pred             CCCCceeeecCCCCCCCHHHHHHHhhcCCCcceeEEeec
Q 030532          135 PENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVSFC  173 (175)
Q Consensus       135 ~~ndfrIFVGNLs~dVTDe~L~~aFskYGSV~~AKVV~D  173 (175)
                      +.+..+||||||+.++|+++|+++|++||.|..++|..|
T Consensus        19 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~   57 (109)
T 1x4a_A           19 GNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNR   57 (109)
T ss_dssp             CCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCS
T ss_pred             CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEC
Confidence            346679999999999999999999999999999998765

>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.46  E-value=3e-07  Score=62.35  Aligned_cols=39  Identities=3%  Similarity=-0.144  Sum_probs=35.8

Q ss_pred             CCCCceeeecCCCCCCCHHHHHHHhhcCCCcceeEEeecC
Q 030532          135 PENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVSFCF  174 (175)
Q Consensus       135 ~~ndfrIFVGNLs~dVTDe~L~~aFskYGSV~~AKVV~D~  174 (175)
                      +....+||||||++++|+++|+++|+.| .|.+++|+.|.
T Consensus         7 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~~   45 (91)
T 2dgw_A            7 GTTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRNA   45 (91)
T ss_dssp             CCCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEECT
T ss_pred             CCCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEECC
Confidence            4567899999999999999999999999 99999999873

>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.46  E-value=3e-07  Score=63.40  Aligned_cols=39  Identities=13%  Similarity=0.219  Sum_probs=34.0

Q ss_pred             CCCCCceeeecCCCCCCCHHHHHHHhhcCCCcceeEEeec
Q 030532          134 WPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVSFC  173 (175)
Q Consensus       134 w~~ndfrIFVGNLs~dVTDe~L~~aFskYGSV~~AKVV~D  173 (175)
                      ......+||||||++++|+++|+++|++||.|. ++|+++
T Consensus        15 ~~~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~~   53 (97)
T 2e5j_A           15 GAPLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTWQ   53 (97)
T ss_dssp             SSCCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEEE
T ss_pred             CCCCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEcC
Confidence            345677999999999999999999999999997 677765

>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=98.46  E-value=1.5e-07  Score=64.87  Aligned_cols=38  Identities=16%  Similarity=0.257  Sum_probs=35.1

Q ss_pred             CCceeeecCCCCCCCHHHHHHHhhcCCCcceeEEeecC
Q 030532          137 NDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVSFCF  174 (175)
Q Consensus       137 ndfrIFVGNLs~dVTDe~L~~aFskYGSV~~AKVV~D~  174 (175)
                      +..+||||||++++|+++|+++|++||.|.+++|+.|.
T Consensus         7 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~   44 (104)
T 1p1t_A            7 SLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDR   44 (104)
T ss_dssp             HHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEET
T ss_pred             CccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCC
Confidence            45689999999999999999999999999999999873

>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A

Probab=98.45  E-value=8.7e-08  Score=70.50  Aligned_cols=40  Identities=15%  Similarity=0.170  Sum_probs=34.9

Q ss_pred             CCCCCCceeeecCCCCCCCHHHHHHHhhcCC-CcceeEEee
Q 030532          133 EWPENDYRLFCGDLGNEVNDDVLSKAFSRFP-SFNMAKVSF  172 (175)
Q Consensus       133 Ew~~ndfrIFVGNLs~dVTDe~L~~aFskYG-SV~~AKVV~  172 (175)
                      ..+...++||||||++++|+++|+++|++|| .|..++|+.
T Consensus        23 ~~p~~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~   63 (111)
T 2jvr_A           23 KLPAKRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNT   63 (111)
T ss_dssp             --CCCCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSS
T ss_pred             CCCCCCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEc
Confidence            3456789999999999999999999999999 999998864

>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A

Probab=98.45  E-value=1.5e-07  Score=65.57  Aligned_cols=39  Identities=31%  Similarity=0.445  Sum_probs=35.3

Q ss_pred             CCCceeeecCCCCCCCHHHHHHHhhcCCCcceeEEeecC
Q 030532          136 ENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVSFCF  174 (175)
Q Consensus       136 ~ndfrIFVGNLs~dVTDe~L~~aFskYGSV~~AKVV~D~  174 (175)
                      .+..+||||||++++|+++|+++|++||.|.+++|+.++
T Consensus         9 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~   47 (103)
T 2dgu_A            9 AKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKLKDY   47 (103)
T ss_dssp             CCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEECSSC
T ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECCE
Confidence            456789999999999999999999999999999987653

>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*

Probab=98.45  E-value=1.2e-07  Score=66.49  Aligned_cols=39  Identities=13%  Similarity=0.304  Sum_probs=35.8

Q ss_pred             CCCceeeecCCCCCCCHHHHHHHhhcCCCcceeEEeecC
Q 030532          136 ENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVSFCF  174 (175)
Q Consensus       136 ~ndfrIFVGNLs~dVTDe~L~~aFskYGSV~~AKVV~D~  174 (175)
                      ....+||||||+.++|+++|+++|++||.|.+++|+.|.
T Consensus        24 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~   62 (110)
T 1oo0_B           24 VEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDR   62 (110)
T ss_dssp             TTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCT
T ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecC
Confidence            456789999999999999999999999999999998773

>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=98.45  E-value=3.1e-07  Score=69.41  Aligned_cols=37  Identities=11%  Similarity=-0.071  Sum_probs=33.2

Q ss_pred             CCCceeeecCCCCCCCHHHHHHHhhcCCCcceeEEee
Q 030532          136 ENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVSF  172 (175)
Q Consensus       136 ~ndfrIFVGNLs~dVTDe~L~~aFskYGSV~~AKVV~  172 (175)
                      .+-.+||||||++++|+++|+++|++||.|.+++|+.
T Consensus        23 s~vl~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~   59 (124)
T 2e5i_A           23 NKVLLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFK   59 (124)
T ss_dssp             CSEEEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEE
T ss_pred             CcEEEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEe
Confidence            3456799999999999999999999999999998864

>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A

Probab=98.44  E-value=2.3e-07  Score=70.36  Aligned_cols=41  Identities=5%  Similarity=-0.107  Sum_probs=37.3

Q ss_pred             CCCCCceeeecCCCCCCCHHHHHHHhhcCCC---cceeEEeecC
Q 030532          134 WPENDYRLFCGDLGNEVNDDVLSKAFSRFPS---FNMAKVSFCF  174 (175)
Q Consensus       134 w~~ndfrIFVGNLs~dVTDe~L~~aFskYGS---V~~AKVV~D~  174 (175)
                      .+.+..+||||||++++|+++|+++|+.||.   |.+++|++|.
T Consensus        40 ~~~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~   83 (136)
T 2hgl_A           40 EGGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTR   83 (136)
T ss_dssp             SCCTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECS
T ss_pred             CCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECC
Confidence            3456789999999999999999999999999   8999999885

>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.44  E-value=1.2e-07  Score=67.67  Aligned_cols=38  Identities=18%  Similarity=0.420  Sum_probs=33.8

Q ss_pred             CCCceeeecCCCCCCCHHHHHHHhhcCCCcceeEEeecC
Q 030532          136 ENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVSFCF  174 (175)
Q Consensus       136 ~ndfrIFVGNLs~dVTDe~L~~aFskYGSV~~AKVV~D~  174 (175)
                      ....+||||||++++|+++|+++|++||.|. ++++.|.
T Consensus         6 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~   43 (114)
T 2dnl_A            6 SGSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKA   43 (114)
T ss_dssp             SCCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSS
T ss_pred             CCCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecC
Confidence            3567899999999999999999999999999 7777663

>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=98.44  E-value=1e-07  Score=68.78  Aligned_cols=39  Identities=10%  Similarity=0.113  Sum_probs=34.7

Q ss_pred             CCCCceeeecCCCCCCCHHHHHHHhhcCCCcceeEEeec
Q 030532          135 PENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVSFC  173 (175)
Q Consensus       135 ~~ndfrIFVGNLs~dVTDe~L~~aFskYGSV~~AKVV~D  173 (175)
                      ..+.++||||||++++|+++|+++|+.||.|.+++++.|
T Consensus        22 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~   60 (124)
T 1wel_A           22 HEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAY   60 (124)
T ss_dssp             CCCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEE
T ss_pred             CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEE
Confidence            346789999999999999999999999999998776665

>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=98.43  E-value=2.4e-07  Score=65.11  Aligned_cols=39  Identities=15%  Similarity=0.261  Sum_probs=35.6

Q ss_pred             CCCCceeeecCCCCCCCHHHHHHHhhcCCCcc--------eeEEeec
Q 030532          135 PENDYRLFCGDLGNEVNDDVLSKAFSRFPSFN--------MAKVSFC  173 (175)
Q Consensus       135 ~~ndfrIFVGNLs~dVTDe~L~~aFskYGSV~--------~AKVV~D  173 (175)
                      ..+..+||||||++++|+++|+++|++||.|.        .++|++|
T Consensus        12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~   58 (113)
T 2cpe_A           12 DSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLD   58 (113)
T ss_dssp             CCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBC
T ss_pred             CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEe
Confidence            34678999999999999999999999999999        6899887

>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}

Probab=98.43  E-value=1.2e-07  Score=67.60  Aligned_cols=37  Identities=16%  Similarity=0.222  Sum_probs=34.8

Q ss_pred             CCceeeecCCCCCCCHHHHHHHhhcCCCcceeEEeec
Q 030532          137 NDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVSFC  173 (175)
Q Consensus       137 ndfrIFVGNLs~dVTDe~L~~aFskYGSV~~AKVV~D  173 (175)
                      ...+||||||+.++|+++|+++|++||.|.+++|+.|
T Consensus        35 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~   71 (124)
T 2jwn_A           35 DKRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCD   71 (124)
T ss_dssp             HHTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEE
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEec
Confidence            3568999999999999999999999999999999987

>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.42  E-value=2.6e-07  Score=69.06  Aligned_cols=39  Identities=10%  Similarity=-0.047  Sum_probs=35.1

Q ss_pred             CCCceeeecCCCCCCCHHHHHHHhhcCCCc----ceeEEeecC
Q 030532          136 ENDYRLFCGDLGNEVNDDVLSKAFSRFPSF----NMAKVSFCF  174 (175)
Q Consensus       136 ~ndfrIFVGNLs~dVTDe~L~~aFskYGSV----~~AKVV~D~  174 (175)
                      .+..+||||||++++|+++|+++|+.||.|    .+++|+.|.
T Consensus        21 ~~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~   63 (123)
T 2dha_A           21 ENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYP   63 (123)
T ss_dssp             CSCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECT
T ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECC
Confidence            467899999999999999999999999875    689998874

>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}

Probab=98.41  E-value=2.3e-07  Score=68.31  Aligned_cols=37  Identities=16%  Similarity=0.064  Sum_probs=33.9

Q ss_pred             CCceeeecCCCCCCCHHHHHHHhhcCCCcceeEEeec
Q 030532          137 NDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVSFC  173 (175)
Q Consensus       137 ndfrIFVGNLs~dVTDe~L~~aFskYGSV~~AKVV~D  173 (175)
                      ..-.||||||++++||++|+++|++||.|.+++|+.+
T Consensus        20 ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~~   56 (100)
T 3r27_A           20 ASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMPK   56 (100)
T ss_dssp             CCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEETT
T ss_pred             CCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEcC
Confidence            4568999999999999999999999999999998754

>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}

Probab=98.41  E-value=4.8e-07  Score=64.97  Aligned_cols=39  Identities=28%  Similarity=0.462  Sum_probs=36.3

Q ss_pred             CCCCceeeecCCCCCCCHHHHHHHhhcCCCcceeEEeec
Q 030532          135 PENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVSFC  173 (175)
Q Consensus       135 ~~ndfrIFVGNLs~dVTDe~L~~aFskYGSV~~AKVV~D  173 (175)
                      +.+..+||||||+.++|+++|+++|++||.|.+++|+.|
T Consensus        60 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~   98 (140)
T 2ku7_A           60 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLD   98 (140)
T ss_dssp             CSSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCC
T ss_pred             CCCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeec
Confidence            356789999999999999999999999999999999887

>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=98.41  E-value=1.5e-07  Score=65.61  Aligned_cols=39  Identities=13%  Similarity=0.190  Sum_probs=35.0

Q ss_pred             CCCCceeeecCCCCCCCHHHHHHHhhcCCC-cceeEEe-ec
Q 030532          135 PENDYRLFCGDLGNEVNDDVLSKAFSRFPS-FNMAKVS-FC  173 (175)
Q Consensus       135 ~~ndfrIFVGNLs~dVTDe~L~~aFskYGS-V~~AKVV-~D  173 (175)
                      +.+..+||||||++++|+++|+++|++||. |.+++|+ .|
T Consensus         5 s~~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~   45 (109)
T 2dis_A            5 SSGNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASA   45 (109)
T ss_dssp             CCCSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSS
T ss_pred             ccCCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccC
Confidence            356789999999999999999999999998 9999887 44

>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}

Probab=98.41  E-value=5.3e-08  Score=65.80  Aligned_cols=35  Identities=17%  Similarity=0.322  Sum_probs=33.3

Q ss_pred             eeeecCCCCCCCHHHHHHHhhcCCCcceeEEeecC
Q 030532          140 RLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVSFCF  174 (175)
Q Consensus       140 rIFVGNLs~dVTDe~L~~aFskYGSV~~AKVV~D~  174 (175)
                      +||||||+.++++++|+++|++||.|.+++|+.|.
T Consensus         3 ~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~   37 (90)
T 2ki2_A            3 NIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDR   37 (90)
T ss_dssp             EEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCS
T ss_pred             EEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcC
Confidence            69999999999999999999999999999999874

>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A

Probab=98.40  E-value=2.4e-07  Score=68.54  Aligned_cols=39  Identities=13%  Similarity=0.121  Sum_probs=36.2

Q ss_pred             CCCceeeecCCCCCCCHHHHHHHhhcCCCcceeEEeecC
Q 030532          136 ENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVSFCF  174 (175)
Q Consensus       136 ~ndfrIFVGNLs~dVTDe~L~~aFskYGSV~~AKVV~D~  174 (175)
                      ....+||||||++++|+++|+++|++||.|.+++|+.|.
T Consensus        44 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~   82 (129)
T 2kxn_B           44 DPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQ   82 (129)
T ss_dssp             CCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCS
T ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecC
Confidence            467899999999999999999999999999999999873

>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A

Probab=98.38  E-value=1.1e-07  Score=66.77  Aligned_cols=38  Identities=13%  Similarity=0.043  Sum_probs=35.2

Q ss_pred             CCceeeecCCCC------CCCHHHHHHHhhcCCCcceeEEeecC
Q 030532          137 NDYRLFCGDLGN------EVNDDVLSKAFSRFPSFNMAKVSFCF  174 (175)
Q Consensus       137 ndfrIFVGNLs~------dVTDe~L~~aFskYGSV~~AKVV~D~  174 (175)
                      .+.+||||||++      ++++++|+++|++||.|.+++|++|.
T Consensus         5 ~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~   48 (100)
T 3ns6_A            5 SDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDE   48 (100)
T ss_dssp             GGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEET
T ss_pred             cCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcC
Confidence            356899999999      99999999999999999999999885

>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A

Probab=98.38  E-value=2.2e-07  Score=70.90  Aligned_cols=39  Identities=8%  Similarity=0.015  Sum_probs=34.5

Q ss_pred             CCCCceeeecCCCCCCCHHHHHHHhhcCCCcceeEEeecC
Q 030532          135 PENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVSFCF  174 (175)
Q Consensus       135 ~~ndfrIFVGNLs~dVTDe~L~~aFskYGSV~~AKVV~D~  174 (175)
                      +....+||||||++++|+++|+++|++|| +.+++|++|.
T Consensus        43 ~~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~   81 (139)
T 2hgn_A           43 STTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGP   81 (139)
T ss_dssp             --CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSS
T ss_pred             CCCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECC
Confidence            35678999999999999999999999999 7799999885

>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X

Probab=98.37  E-value=4.1e-07  Score=67.60  Aligned_cols=39  Identities=13%  Similarity=0.229  Sum_probs=36.2

Q ss_pred             CCCceeeecCCCCCCCHHHHHHHhhcCCCcceeEEeecC
Q 030532          136 ENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVSFCF  174 (175)
Q Consensus       136 ~ndfrIFVGNLs~dVTDe~L~~aFskYGSV~~AKVV~D~  174 (175)
                      .+..+||||||+.++|+++|.++|++||.|.+++|+.|.
T Consensus        37 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~   75 (156)
T 1h2v_Z           37 KKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDK   75 (156)
T ss_dssp             TTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECT
T ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecC
Confidence            456799999999999999999999999999999998874

>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A

Probab=98.37  E-value=4.2e-07  Score=64.99  Aligned_cols=37  Identities=22%  Similarity=0.359  Sum_probs=33.8

Q ss_pred             CCCCceeeecCCCCCCCHHHHHHHhhcCCCcceeEEe
Q 030532          135 PENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVS  171 (175)
Q Consensus       135 ~~ndfrIFVGNLs~dVTDe~L~~aFskYGSV~~AKVV  171 (175)
                      +....+||||||+.++|+++|+++|++||.|.+++|+
T Consensus        28 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~   64 (108)
T 2jvo_A           28 ELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL   64 (108)
T ss_dssp             CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE
T ss_pred             CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE
Confidence            3467799999999999999999999999999998875

>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A

Probab=98.36  E-value=3.3e-07  Score=69.12  Aligned_cols=40  Identities=13%  Similarity=-0.045  Sum_probs=35.4

Q ss_pred             CCCCCceeeecCCCCCCCHHHHHHHhhcCCCcc--eeEEeecC
Q 030532          134 WPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFN--MAKVSFCF  174 (175)
Q Consensus       134 w~~ndfrIFVGNLs~dVTDe~L~~aFskYGSV~--~AKVV~D~  174 (175)
                      ...+..+||||||++++|+++|+++|+.| .|.  +++|++|.
T Consensus        38 ~~~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~   79 (126)
T 2hgm_A           38 DSANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDP   79 (126)
T ss_dssp             CSSSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCS
T ss_pred             CCCCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECC
Confidence            34567889999999999999999999999 787  89998875

>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.36  E-value=4.6e-07  Score=62.15  Aligned_cols=35  Identities=17%  Similarity=0.184  Sum_probs=31.2

Q ss_pred             CCceeeecCCCCCCCHHHHHHHhhcCCCcceeEEeec
Q 030532          137 NDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVSFC  173 (175)
Q Consensus       137 ndfrIFVGNLs~dVTDe~L~~aFskYGSV~~AKVV~D  173 (175)
                      ...+||||||++++|+++|+++|++||.|.++  ++|
T Consensus         7 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v--~~~   41 (94)
T 2e5g_A            7 GLRSVFVSGFPRGVDSAQLSEYFLAFGPVASV--VMD   41 (94)
T ss_dssp             TCCEEEEECCCTTCCHHHHHHHGGGTSCEEEE--EEC
T ss_pred             CCCEEEEECCCCCCCHHHHHHHHHhcCCeEEE--EEc
Confidence            45699999999999999999999999999875  554

>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A

Probab=98.36  E-value=3.4e-07  Score=70.32  Aligned_cols=41  Identities=22%  Similarity=0.126  Sum_probs=35.2

Q ss_pred             CCCCCCceeeecCCCCCCCHHHHHHHhhcCCCcceeEEeec
Q 030532          133 EWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVSFC  173 (175)
Q Consensus       133 Ew~~ndfrIFVGNLs~dVTDe~L~~aFskYGSV~~AKVV~D  173 (175)
                      .-+.+-.+||||||++++|+++|+++|++||.|.+++|+.+
T Consensus        23 ~~ps~VL~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~   63 (130)
T 3zzy_A           23 AGQSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK   63 (130)
T ss_dssp             --CCSEEEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEE
T ss_pred             CCCCceEEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcC
Confidence            33456679999999999999999999999999999988754

>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1

Probab=98.36  E-value=2.2e-07  Score=69.21  Aligned_cols=38  Identities=11%  Similarity=0.033  Sum_probs=34.5

Q ss_pred             CCCceeeecCCCCC-CCHHHHHHHhhcCCCcceeEEeec
Q 030532          136 ENDYRLFCGDLGNE-VNDDVLSKAFSRFPSFNMAKVSFC  173 (175)
Q Consensus       136 ~ndfrIFVGNLs~d-VTDe~L~~aFskYGSV~~AKVV~D  173 (175)
                      ....+||||||+++ +||++|+++|++||.|.+++|+.+
T Consensus        23 ~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~~   61 (112)
T 1x4f_A           23 ELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMRM   61 (112)
T ss_dssp             CCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEETT
T ss_pred             CCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEecC
Confidence            35678999999998 999999999999999999998753

>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.36  E-value=2.7e-07  Score=63.66  Aligned_cols=38  Identities=18%  Similarity=0.363  Sum_probs=32.9

Q ss_pred             CCCCCCceeeecCCCCCCCHHHHHHHhhcCCCcceeEEeec
Q 030532          133 EWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVSFC  173 (175)
Q Consensus       133 Ew~~ndfrIFVGNLs~dVTDe~L~~aFskYGSV~~AKVV~D  173 (175)
                      +++....+||||||++++|+++|+++|++||.|   +|+.|
T Consensus        10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v---~~~~~   47 (101)
T 2fc9_A           10 TWSGESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQN   47 (101)
T ss_dssp             CCSCCCSEEEEESCCTTCCHHHHHHHCSSCSEE---ECCBC
T ss_pred             cCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCEE---EEEEC
Confidence            356678999999999999999999999999987   55554

>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}

Probab=98.35  E-value=6.9e-07  Score=64.00  Aligned_cols=40  Identities=35%  Similarity=0.672  Sum_probs=36.8

Q ss_pred             CCCCCceeeecCCCCCCCHHHHHHHhhcCCCcceeEEeec
Q 030532          134 WPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVSFC  173 (175)
Q Consensus       134 w~~ndfrIFVGNLs~dVTDe~L~~aFskYGSV~~AKVV~D  173 (175)
                      ......+||||||+.++|+++|+++|++||.|..++|+.|
T Consensus        83 ~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~  122 (166)
T 3md3_A           83 SSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWD  122 (166)
T ss_dssp             CCTTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEEC
T ss_pred             CCCCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEec
Confidence            4456789999999999999999999999999999999987

>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=98.35  E-value=6.8e-07  Score=61.65  Aligned_cols=38  Identities=13%  Similarity=0.153  Sum_probs=33.8

Q ss_pred             CCCceeeecCCCCCCCHHHHHHHhhcC--CCcceeEEeec
Q 030532          136 ENDYRLFCGDLGNEVNDDVLSKAFSRF--PSFNMAKVSFC  173 (175)
Q Consensus       136 ~ndfrIFVGNLs~dVTDe~L~~aFskY--GSV~~AKVV~D  173 (175)
                      .+..+||||||++++|+++|+++|++|  |.|.+++++.+
T Consensus        13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~~g   52 (99)
T 2cpd_A           13 SSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKIRD   52 (99)
T ss_dssp             SCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEECSS
T ss_pred             CCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEeCC
Confidence            456789999999999999999999999  99998887643

>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}

Probab=98.34  E-value=4.3e-07  Score=62.69  Aligned_cols=36  Identities=25%  Similarity=0.383  Sum_probs=32.7

Q ss_pred             CCCceeeecCCCC-CCCHHHHHHHhhcCCCcceeEEe
Q 030532          136 ENDYRLFCGDLGN-EVNDDVLSKAFSRFPSFNMAKVS  171 (175)
Q Consensus       136 ~ndfrIFVGNLs~-dVTDe~L~~aFskYGSV~~AKVV  171 (175)
                      +...+||||||++ ++|+++|+++|++||.|.+++|.
T Consensus         8 ~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~   44 (96)
T 2kvi_A            8 PPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK   44 (96)
T ss_dssp             -CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE
T ss_pred             CCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe
Confidence            4677999999999 99999999999999999998874

>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1

Probab=98.33  E-value=1.7e-07  Score=66.69  Aligned_cols=38  Identities=13%  Similarity=0.218  Sum_probs=35.2

Q ss_pred             CCceeeecCCCCCCCHHHHH---HHhhcCCCcceeEEeecC
Q 030532          137 NDYRLFCGDLGNEVNDDVLS---KAFSRFPSFNMAKVSFCF  174 (175)
Q Consensus       137 ndfrIFVGNLs~dVTDe~L~---~aFskYGSV~~AKVV~D~  174 (175)
                      ...+||||||++++++++|.   ++|++||.|.+++|+.|.
T Consensus        14 ~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~   54 (111)
T 2cpi_A           14 QKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNST   54 (111)
T ss_dssp             CSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCS
T ss_pred             CCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCC
Confidence            46689999999999999999   999999999999998774

>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1

Probab=98.32  E-value=3.3e-07  Score=62.54  Aligned_cols=44  Identities=18%  Similarity=0.294  Sum_probs=36.9

Q ss_pred             cccCCCCCCCCCCCceeeecCCCCCCCHHHHHHHhhcCCCccee
Q 030532          125 TWEDPTLAEWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMA  168 (175)
Q Consensus       125 ~WeDptL~Ew~~ndfrIFVGNLs~dVTDe~L~~aFskYGSV~~A  168 (175)
                      .|.+|...+-+....+||||||++++|+++|+++|++||.|..+
T Consensus         3 ~~~~p~~~~~~~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~   46 (96)
T 1fjc_A            3 MLEDPCTSKKVRAARTLLAKNLSFNITEDELKEVFEDALEIRLV   46 (96)
T ss_dssp             CSSCTTTTSTTTGGGEEEEESCCSSCCHHHHHHHHCSEEEECCE
T ss_pred             cccCccccccCCCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe
Confidence            45666655566678899999999999999999999999987654

>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.31  E-value=4.8e-07  Score=66.05  Aligned_cols=38  Identities=5%  Similarity=0.031  Sum_probs=35.0

Q ss_pred             CCCceeeecCCCCCCCHHHHHHHhhcCCCcceeEEeecC
Q 030532          136 ENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVSFCF  174 (175)
Q Consensus       136 ~ndfrIFVGNLs~dVTDe~L~~aFskYGSV~~AKVV~D~  174 (175)
                      .+.++||||||++++|+++|+++|+.| .|.+++|++|.
T Consensus        14 ~~~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~   51 (109)
T 2dnn_A           14 PDDLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDH   51 (109)
T ss_dssp             HHHHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCT
T ss_pred             CCCCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECC
Confidence            356799999999999999999999999 89999999885

>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1

Probab=98.27  E-value=3.5e-07  Score=65.57  Aligned_cols=36  Identities=17%  Similarity=0.215  Sum_probs=32.7

Q ss_pred             CCceeeecCCCCCCCHHHHHHHhhcCCCcceeEEee
Q 030532          137 NDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVSF  172 (175)
Q Consensus       137 ndfrIFVGNLs~dVTDe~L~~aFskYGSV~~AKVV~  172 (175)
                      ...+||||||++++|+++|+++|++||.|.+++|+.
T Consensus         9 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~   44 (111)
T 1whx_A            9 SKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPE   44 (111)
T ss_dssp             EEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCS
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeC
Confidence            456899999999999999999999999999988764

>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A

Probab=98.27  E-value=4.8e-07  Score=60.33  Aligned_cols=38  Identities=11%  Similarity=0.232  Sum_probs=34.0

Q ss_pred             CCCceeeecCCCCCCCHHHHHHHhhcC----C-------CcceeEEeec
Q 030532          136 ENDYRLFCGDLGNEVNDDVLSKAFSRF----P-------SFNMAKVSFC  173 (175)
Q Consensus       136 ~ndfrIFVGNLs~dVTDe~L~~aFskY----G-------SV~~AKVV~D  173 (175)
                      ....+||||||++++|+++|+++|++|    |       .|.++++..|
T Consensus         4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~   52 (87)
T 2hzc_A            4 GSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD   52 (87)
T ss_dssp             GGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS
T ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC
Confidence            456789999999999999999999999    8       8888888765

>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A

Probab=98.27  E-value=7.5e-07  Score=67.28  Aligned_cols=37  Identities=14%  Similarity=0.366  Sum_probs=34.3

Q ss_pred             CCceeeecCCCCCCCHHHHHHHhhcCCCcceeEEeec
Q 030532          137 NDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVSFC  173 (175)
Q Consensus       137 ndfrIFVGNLs~dVTDe~L~~aFskYGSV~~AKVV~D  173 (175)
                      ...+||||||++++|+++|.++|++||.|..++|+.|
T Consensus        71 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~  107 (165)
T 1rk8_A           71 EGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLD  107 (165)
T ss_dssp             -CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEC
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEEEec
Confidence            4567999999999999999999999999999999987

>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A

Probab=98.27  E-value=4.6e-07  Score=67.29  Aligned_cols=39  Identities=15%  Similarity=0.155  Sum_probs=35.6

Q ss_pred             CCCceeeecCCCCCCCHHHHHHHhhcCCCcceeEEeecC
Q 030532          136 ENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVSFCF  174 (175)
Q Consensus       136 ~ndfrIFVGNLs~dVTDe~L~~aFskYGSV~~AKVV~D~  174 (175)
                      ....+||||||++++|+++|+++|++||.|.+++|+.|.
T Consensus        45 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~   83 (135)
T 2lea_A           45 EGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDR   83 (135)
T ss_dssp             GGCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEECCCCS
T ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecC
Confidence            356789999999999999999999999999999998873

>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A

Probab=98.27  E-value=1.4e-06  Score=61.21  Aligned_cols=34  Identities=24%  Similarity=0.420  Sum_probs=31.5

Q ss_pred             CCceeeecCCCCC-CCHHHHHHHhhcCCCcceeEE
Q 030532          137 NDYRLFCGDLGNE-VNDDVLSKAFSRFPSFNMAKV  170 (175)
Q Consensus       137 ndfrIFVGNLs~d-VTDe~L~~aFskYGSV~~AKV  170 (175)
                      ...+||||||+++ +|+++|+++|++||.|.+++|
T Consensus        26 ~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i   60 (110)
T 1wf1_A           26 INSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV   60 (110)
T ss_dssp             CSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE
T ss_pred             CCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE
Confidence            4579999999999 999999999999999998876

>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=98.26  E-value=7.6e-07  Score=60.59  Aligned_cols=35  Identities=20%  Similarity=0.268  Sum_probs=30.0

Q ss_pred             CCCceeeecCCCCCCCHHHHHHHhhcCCC-cceeEE
Q 030532          136 ENDYRLFCGDLGNEVNDDVLSKAFSRFPS-FNMAKV  170 (175)
Q Consensus       136 ~ndfrIFVGNLs~dVTDe~L~~aFskYGS-V~~AKV  170 (175)
                      ....+||||||++++|+++|+++|++||. |...+|
T Consensus         6 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~   41 (93)
T 2cqh_A            6 SGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVL   41 (93)
T ss_dssp             CCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEE
T ss_pred             CCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEE
Confidence            45678999999999999999999999999 554443

>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}

Probab=98.26  E-value=5.2e-07  Score=66.34  Aligned_cols=37  Identities=8%  Similarity=0.056  Sum_probs=33.8

Q ss_pred             CCceeeecCCCCCCCHHHHHHHhhcCCCcceeEEeec
Q 030532          137 NDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVSFC  173 (175)
Q Consensus       137 ndfrIFVGNLs~dVTDe~L~~aFskYGSV~~AKVV~D  173 (175)
                      ....||||||++++||++|+++|++||.|.+++++..
T Consensus         6 ~~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~~   42 (89)
T 2wbr_A            6 GSSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYLN   42 (89)
T ss_dssp             CCCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEETT
T ss_pred             ccceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcCC
Confidence            3567999999999999999999999999999998763

>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A

Probab=98.26  E-value=6.7e-07  Score=67.30  Aligned_cols=38  Identities=21%  Similarity=0.375  Sum_probs=34.6

Q ss_pred             CCceeeecCCCCCCCHHHHHHHhhcCCCcceeEEeecC
Q 030532          137 NDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVSFCF  174 (175)
Q Consensus       137 ndfrIFVGNLs~dVTDe~L~~aFskYGSV~~AKVV~D~  174 (175)
                      ...+||||||+.++|+++|+++|++||.|.+++|+.|.
T Consensus        27 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~   64 (216)
T 2qfj_A           27 IMSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDS   64 (216)
T ss_dssp             HHTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-
T ss_pred             cCCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecC
Confidence            35689999999999999999999999999999998874

>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*

Probab=98.25  E-value=7.7e-07  Score=69.02  Aligned_cols=38  Identities=21%  Similarity=0.262  Sum_probs=35.4

Q ss_pred             CCceeeecCCCCCCCHHHHHHHhhcCCCcceeEEeecC
Q 030532          137 NDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVSFCF  174 (175)
Q Consensus       137 ndfrIFVGNLs~dVTDe~L~~aFskYGSV~~AKVV~D~  174 (175)
                      ...+||||||++++|+++|+++|++||.|.+++|+.|.
T Consensus       102 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~  139 (213)
T 4f02_A          102 GVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE  139 (213)
T ss_dssp             CTTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET
T ss_pred             ccccceECCcccccHHHHHHHHHhhcCCeEEEEeeccC
Confidence            45689999999999999999999999999999999874

>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}

Probab=98.25  E-value=1.4e-06  Score=67.78  Aligned_cols=38  Identities=21%  Similarity=0.353  Sum_probs=35.2

Q ss_pred             CCceeeecCCCCCCCHHHHHHHhhcCCCcceeEEeecC
Q 030532          137 NDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVSFCF  174 (175)
Q Consensus       137 ndfrIFVGNLs~dVTDe~L~~aFskYGSV~~AKVV~D~  174 (175)
                      ...+||||||++++++++|.++|++||.|..++|+.|.
T Consensus        87 ~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~  124 (177)
T 2f3j_A           87 TGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR  124 (177)
T ss_dssp             TCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCT
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC
Confidence            35789999999999999999999999999999999874

>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...

Probab=98.24  E-value=8.5e-07  Score=60.40  Aligned_cols=36  Identities=25%  Similarity=0.395  Sum_probs=32.9

Q ss_pred             CCCceeeecCCCCCCCHHHHH----HHhhcCCCcceeEEe
Q 030532          136 ENDYRLFCGDLGNEVNDDVLS----KAFSRFPSFNMAKVS  171 (175)
Q Consensus       136 ~ndfrIFVGNLs~dVTDe~L~----~aFskYGSV~~AKVV  171 (175)
                      +...+||||||+.++|+++|+    ++|++||.|.+++|+
T Consensus         6 ~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~   45 (97)
T 1nu4_A            6 RPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVS   45 (97)
T ss_dssp             CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECC
T ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEE
Confidence            466799999999999999999    999999999998775

>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}

Probab=97.55  E-value=1.4e-07  Score=66.99  Aligned_cols=39  Identities=13%  Similarity=0.244  Sum_probs=35.5

Q ss_pred             CCCCceeeecCCCCCCCHHHHHHHhhcCCCcce--------eEEeec
Q 030532          135 PENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNM--------AKVSFC  173 (175)
Q Consensus       135 ~~ndfrIFVGNLs~dVTDe~L~~aFskYGSV~~--------AKVV~D  173 (175)
                      +.+..+||||||+.++|+++|+++|++||.|..        ++|++|
T Consensus         4 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~   50 (116)
T 2lcw_A            4 NSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTD   50 (116)
Confidence            346779999999999999999999999999998        888877

>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A

Probab=98.23  E-value=1.2e-06  Score=65.06  Aligned_cols=39  Identities=10%  Similarity=0.263  Sum_probs=35.4

Q ss_pred             CCCceeeecCCCCCCCHHHHHHHhhcCCCcceeEEeecC
Q 030532          136 ENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVSFCF  174 (175)
Q Consensus       136 ~ndfrIFVGNLs~dVTDe~L~~aFskYGSV~~AKVV~D~  174 (175)
                      ....+||||||++++|+++|+++|++||.|..++|+.|.
T Consensus       102 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~  140 (196)
T 1l3k_A          102 LTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDR  140 (196)
T ss_dssp             -CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECT
T ss_pred             CCcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecC
Confidence            345789999999999999999999999999999999874

>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A

Probab=98.23  E-value=1.1e-06  Score=59.82  Aligned_cols=35  Identities=9%  Similarity=0.208  Sum_probs=32.0

Q ss_pred             CCCceeeecCCCCCCCHHHHHHHhhcCCCcceeEEe
Q 030532          136 ENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVS  171 (175)
Q Consensus       136 ~ndfrIFVGNLs~dVTDe~L~~aFskYGSV~~AKVV  171 (175)
                      .+..+||||||++++|+++|+++|++| .|.+++|.
T Consensus         3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~   37 (88)
T 1wg1_A            3 SGSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD   37 (88)
T ss_dssp             CCCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE
T ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe
Confidence            467899999999999999999999999 99998873

>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E

Probab=98.22  E-value=5.9e-07  Score=71.33  Aligned_cols=43  Identities=12%  Similarity=0.162  Sum_probs=39.3

Q ss_pred             CCCCCCCceeeecCCCCCCCHHHHHHHhhcCCCcceeEEeecC
Q 030532          132 AEWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVSFCF  174 (175)
Q Consensus       132 ~Ew~~ndfrIFVGNLs~dVTDe~L~~aFskYGSV~~AKVV~D~  174 (175)
                      .+|...+.+||||||++++|+++|+++|+.||.|.+++|+.|.
T Consensus        89 v~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~  131 (284)
T 3smz_A           89 VQLQPTDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSE  131 (284)
T ss_dssp             EEECCCSCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECT
T ss_pred             EEecCCCCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeC
Confidence            4567788999999999999999999999999999999999874

>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}

Probab=98.22  E-value=6.6e-07  Score=59.82  Aligned_cols=33  Identities=15%  Similarity=0.179  Sum_probs=30.3

Q ss_pred             ceeeecCCCCCC------CHHHHHHHhhcCCCcceeEEe
Q 030532          139 YRLFCGDLGNEV------NDDVLSKAFSRFPSFNMAKVS  171 (175)
Q Consensus       139 frIFVGNLs~dV------TDe~L~~aFskYGSV~~AKVV  171 (175)
                      .+||||||+.++      |+++|+++|++||.|.+++|+
T Consensus         2 ~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~   40 (81)
T 2krb_A            2 SVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP   40 (81)
T ss_dssp             CEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred             CEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEec
Confidence            479999999999      669999999999999998876

>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B

Probab=98.21  E-value=6.9e-07  Score=71.47  Aligned_cols=43  Identities=23%  Similarity=0.289  Sum_probs=38.7

Q ss_pred             CCCCCCCceeeecCCCCCCCHHHHHHHhhcCCCcceeEEeecC
Q 030532          132 AEWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVSFCF  174 (175)
Q Consensus       132 ~Ew~~ndfrIFVGNLs~dVTDe~L~~aFskYGSV~~AKVV~D~  174 (175)
                      .+|..+..+||||||+.++|+++|+++|++||.|.+++|+.|.
T Consensus        90 v~~a~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~  132 (261)
T 3sde_A           90 IRFATHGAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVDD  132 (261)
T ss_dssp             EEECCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET
T ss_pred             eeecccCCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeCC
Confidence            3455667899999999999999999999999999999999884

>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}

Probab=98.20  E-value=2.7e-07  Score=67.70  Aligned_cols=33  Identities=24%  Similarity=0.524  Sum_probs=30.3

Q ss_pred             CCCceeeecCCCCCCCHHHHHHHhhcCCCccee
Q 030532          136 ENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMA  168 (175)
Q Consensus       136 ~ndfrIFVGNLs~dVTDe~L~~aFskYGSV~~A  168 (175)
                      ....+||||||++++|+++|+++|++||.|..+
T Consensus        43 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~   75 (143)
T 3egn_A           43 EPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSE   75 (143)
T ss_dssp             SCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCH
T ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccc
Confidence            356789999999999999999999999999876

>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A

Probab=98.20  E-value=8.6e-07  Score=70.68  Aligned_cols=39  Identities=23%  Similarity=0.167  Sum_probs=34.8

Q ss_pred             CCCCceeeecCCCCCCCHHHHHHHhhcCCCcceeEEeec
Q 030532          135 PENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVSFC  173 (175)
Q Consensus       135 ~~ndfrIFVGNLs~dVTDe~L~~aFskYGSV~~AKVV~D  173 (175)
                      +.+-.+||||||++++|+++|+++|++||.|.+++|+.+
T Consensus        43 ps~vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k   81 (164)
T 1sjr_A           43 QSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK   81 (164)
T ss_dssp             CCCEEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEES
T ss_pred             CCceEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeC
Confidence            345678999999999999999999999999999998654

>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A

Probab=98.19  E-value=1.3e-06  Score=63.19  Aligned_cols=38  Identities=18%  Similarity=0.331  Sum_probs=35.5

Q ss_pred             CCceeeecCCCCCCCHHHHHHHhhcCCCcceeEEeecC
Q 030532          137 NDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVSFCF  174 (175)
Q Consensus       137 ndfrIFVGNLs~dVTDe~L~~aFskYGSV~~AKVV~D~  174 (175)
                      ...+||||||+.++|+++|+++|++||.|.+++|+.|.
T Consensus        94 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~  131 (175)
T 3nmr_A           94 EDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGP  131 (175)
T ss_dssp             GGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECT
T ss_pred             CCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECC
Confidence            56789999999999999999999999999999999874

>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=98.19  E-value=5.5e-07  Score=67.65  Aligned_cols=37  Identities=19%  Similarity=0.213  Sum_probs=32.7

Q ss_pred             CCceeee--cCCCCCCCHHHHHHHhhcCCCcceeEEeec
Q 030532          137 NDYRLFC--GDLGNEVNDDVLSKAFSRFPSFNMAKVSFC  173 (175)
Q Consensus       137 ndfrIFV--GNLs~dVTDe~L~~aFskYGSV~~AKVV~D  173 (175)
                      ...+|||  |||++++||++|+++|++||.|.+++|+.|
T Consensus        24 pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~~   62 (114)
T 2cq2_A           24 ATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPPN   62 (114)
T ss_dssp             CCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCTT
T ss_pred             CCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeCC
Confidence            4567999  889999999999999999999999877644

>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}

Probab=98.17  E-value=1.4e-06  Score=61.25  Aligned_cols=36  Identities=17%  Similarity=0.174  Sum_probs=32.5

Q ss_pred             CCCceeeecCCCCCC------CHHHHHHHhhcCCCcceeEEe
Q 030532          136 ENDYRLFCGDLGNEV------NDDVLSKAFSRFPSFNMAKVS  171 (175)
Q Consensus       136 ~ndfrIFVGNLs~dV------TDe~L~~aFskYGSV~~AKVV  171 (175)
                      ....+||||||++++      |+++|+++|++||.|.+++|+
T Consensus        13 ~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~   54 (105)
T 2nlw_A           13 GIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP   54 (105)
T ss_dssp             SCCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECC
T ss_pred             CCCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEee
Confidence            346789999999999      679999999999999999877

>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A

Probab=98.15  E-value=3.2e-06  Score=61.47  Aligned_cols=39  Identities=23%  Similarity=0.316  Sum_probs=36.1

Q ss_pred             CCCceeeecCCCCCCCHHHHHHHhhcCCCcceeEEeecC
Q 030532          136 ENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVSFCF  174 (175)
Q Consensus       136 ~ndfrIFVGNLs~dVTDe~L~~aFskYGSV~~AKVV~D~  174 (175)
                      ....+||||||+.++|+++|+++|++||.|..++|+.|.
T Consensus        92 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~  130 (172)
T 2g4b_A           92 PGAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDS  130 (172)
T ss_dssp             TTTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECT
T ss_pred             CCCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecC
Confidence            347899999999999999999999999999999999874

>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=98.15  E-value=4e-07  Score=63.98  Aligned_cols=34  Identities=24%  Similarity=0.317  Sum_probs=29.8

Q ss_pred             CCCceeeecCCCCCCCHHHHHHHhhcCCCcceeE
Q 030532          136 ENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAK  169 (175)
Q Consensus       136 ~ndfrIFVGNLs~dVTDe~L~~aFskYGSV~~AK  169 (175)
                      ....+||||||+.++|+++|+++|++||.|.++.
T Consensus        23 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~   56 (115)
T 2cpx_A           23 EPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPP   56 (115)
T ss_dssp             SCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSC
T ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceE
Confidence            3567999999999999999999999999985443

>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A

Probab=98.14  E-value=2.3e-06  Score=64.30  Aligned_cols=39  Identities=15%  Similarity=0.272  Sum_probs=35.8

Q ss_pred             CCCceeeecCCCCCCCHHHHHHHhhcCCCcceeEEeecC
Q 030532          136 ENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVSFCF  174 (175)
Q Consensus       136 ~ndfrIFVGNLs~dVTDe~L~~aFskYGSV~~AKVV~D~  174 (175)
                      ....+|||+||+.++|+++|+++|++||.|..++|+.|.
T Consensus       123 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~  161 (216)
T 2qfj_A          123 RAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDP  161 (216)
T ss_dssp             TTSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECT
T ss_pred             CCCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecC
Confidence            355799999999999999999999999999999999873

>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A

Probab=98.12  E-value=2.4e-06  Score=67.14  Aligned_cols=37  Identities=3%  Similarity=0.003  Sum_probs=34.7

Q ss_pred             CceeeecCCCCCCCHHHHHHHhhcCCCcceeEEeecC
Q 030532          138 DYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVSFCF  174 (175)
Q Consensus       138 dfrIFVGNLs~dVTDe~L~~aFskYGSV~~AKVV~D~  174 (175)
                      ..+||||||++++|+++|+++|++||.|..++|+.|.
T Consensus       109 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~  145 (193)
T 2voo_A          109 NRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTL  145 (193)
T ss_dssp             HTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECT
T ss_pred             cCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECC
Confidence            4689999999999999999999999999999999875

>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C

Probab=98.11  E-value=1.2e-06  Score=63.47  Aligned_cols=38  Identities=18%  Similarity=0.344  Sum_probs=35.0

Q ss_pred             CCceeeecCCCCCCCHHHHHHHhhcCCCcceeEEeecC
Q 030532          137 NDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVSFCF  174 (175)
Q Consensus       137 ndfrIFVGNLs~dVTDe~L~~aFskYGSV~~AKVV~D~  174 (175)
                      ...+||||||+.++|+++|+++|++||.|.+++|+.|.
T Consensus        86 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~  123 (167)
T 2cjk_A           86 KTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDK  123 (167)
T ss_dssp             HCEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSS
T ss_pred             CCCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcC
Confidence            45689999999999999999999999999999998873

>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A

Probab=98.11  E-value=2.9e-06  Score=62.98  Aligned_cols=39  Identities=23%  Similarity=0.347  Sum_probs=36.2

Q ss_pred             CCCceeeecCCCCCCCHHHHHHHhhcCCCcceeEEeecC
Q 030532          136 ENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVSFCF  174 (175)
Q Consensus       136 ~ndfrIFVGNLs~dVTDe~L~~aFskYGSV~~AKVV~D~  174 (175)
                      ....+||||||+.++|+++|+++|++||.|.+++|+.|.
T Consensus       112 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~  150 (198)
T 2yh0_A          112 DSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDS  150 (198)
T ss_dssp             CCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECT
T ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecC
Confidence            466899999999999999999999999999999999874

>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A

Probab=98.11  E-value=1.9e-06  Score=67.52  Aligned_cols=39  Identities=18%  Similarity=0.232  Sum_probs=36.0

Q ss_pred             CCCceeeecCCCC-CCCHHHHHHHhhcCCCcceeEEeecC
Q 030532          136 ENDYRLFCGDLGN-EVNDDVLSKAFSRFPSFNMAKVSFCF  174 (175)
Q Consensus       136 ~ndfrIFVGNLs~-dVTDe~L~~aFskYGSV~~AKVV~D~  174 (175)
                      ....+||||||++ ++|+++|+++|++||.|.+++|+.|.
T Consensus        32 ~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~   71 (229)
T 2adc_A           32 AGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK   71 (229)
T ss_dssp             CCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTT
T ss_pred             CCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECC
Confidence            4677999999999 99999999999999999999999874

>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=98.08  E-value=6.2e-06  Score=56.74  Aligned_cols=35  Identities=20%  Similarity=0.301  Sum_probs=31.0

Q ss_pred             CCCCceeeecCCCCCCCHHHHHHHhhcCCCcceeEEe
Q 030532          135 PENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVS  171 (175)
Q Consensus       135 ~~ndfrIFVGNLs~dVTDe~L~~aFskYGSV~~AKVV  171 (175)
                      .....+||||||  ++|+++|+++|++||.|.+++|.
T Consensus        12 ~~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~   46 (97)
T 1x5p_A           12 PRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD   46 (97)
T ss_dssp             CCCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEE
T ss_pred             CCCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEec
Confidence            346679999996  99999999999999999998874

>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A

Probab=98.08  E-value=4.2e-06  Score=66.32  Aligned_cols=40  Identities=28%  Similarity=0.379  Sum_probs=36.0

Q ss_pred             CCCCceeeecCCCCCCCHHHHHHHhhcCCCcceeEEeecC
Q 030532          135 PENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVSFCF  174 (175)
Q Consensus       135 ~~ndfrIFVGNLs~dVTDe~L~~aFskYGSV~~AKVV~D~  174 (175)
                      +....+||||||+.++|+++|+++|++||.|.+++|+.|.
T Consensus       204 ~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~~~~~  243 (282)
T 3pgw_A          204 NPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGR  243 (282)
T ss_pred             CCCCCEEEEeCCCCcCCHHHHHHHHHhcCCeEEEEEecCC
Confidence            3456789999999999999999999999999999998763

>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A

Probab=98.07  E-value=4.3e-06  Score=60.32  Aligned_cols=39  Identities=21%  Similarity=0.297  Sum_probs=35.9

Q ss_pred             CCCceeeecCCCCCCCHHHHHHHhhcCCCcceeEEeecC
Q 030532          136 ENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVSFCF  174 (175)
Q Consensus       136 ~ndfrIFVGNLs~dVTDe~L~~aFskYGSV~~AKVV~D~  174 (175)
                      ....+|||+||+.++|+++|+++|++||.|..++|+.|.
T Consensus        87 ~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~  125 (168)
T 1b7f_A           87 IKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDK  125 (168)
T ss_dssp             TTTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECT
T ss_pred             CCCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcC
Confidence            356789999999999999999999999999999998874

>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A

Probab=98.05  E-value=4.2e-06  Score=59.92  Aligned_cols=38  Identities=16%  Similarity=0.288  Sum_probs=35.3

Q ss_pred             CCceeeecCCCCCCCHHHHHHHhhcCCCcceeEEeecC
Q 030532          137 NDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVSFCF  174 (175)
Q Consensus       137 ndfrIFVGNLs~dVTDe~L~~aFskYGSV~~AKVV~D~  174 (175)
                      ...+||||||+.++|+++|+++|++||.|..++|+.|.
T Consensus        87 ~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~  124 (167)
T 1fxl_A           87 RDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQ  124 (167)
T ss_dssp             TTCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECT
T ss_pred             CCCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecC
Confidence            46789999999999999999999999999999998874

>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A

Probab=98.03  E-value=2.6e-06  Score=67.90  Aligned_cols=41  Identities=12%  Similarity=0.094  Sum_probs=34.4

Q ss_pred             CCCCCceeeecCCCCCCCHHHHHHHhhcCCCcceeEEeecC
Q 030532          134 WPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVSFCF  174 (175)
Q Consensus       134 w~~ndfrIFVGNLs~dVTDe~L~~aFskYGSV~~AKVV~D~  174 (175)
                      -+....+||||||++++|+++|+++|+.||.|.+++|+.|.
T Consensus        37 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~   77 (292)
T 2ghp_A           37 RNRELTTVLVKNLPKSYNQNKVYKYFKHCGPIIHVDVADSL   77 (292)
T ss_dssp             -----CEEEEEEECTTCCHHHHHHHHGGGSCEEEEEEEECT
T ss_pred             cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC
Confidence            34567899999999999999999999999999999999874

>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B

Probab=98.02  E-value=3.8e-06  Score=67.19  Aligned_cols=38  Identities=18%  Similarity=0.393  Sum_probs=35.0

Q ss_pred             CCCceeeecCCCCCCCHHHHHHHhhcCCCcceeEEeec
Q 030532          136 ENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVSFC  173 (175)
Q Consensus       136 ~ndfrIFVGNLs~dVTDe~L~~aFskYGSV~~AKVV~D  173 (175)
                      .+..+||||||++++|+++|+++|++||.|.+++|+.+
T Consensus        20 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~   57 (261)
T 3sde_A           20 TQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINRD   57 (261)
T ss_dssp             CGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEETT
T ss_pred             CCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeCC
Confidence            46789999999999999999999999999999998754

>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}

Probab=98.01  E-value=4.6e-06  Score=62.43  Aligned_cols=37  Identities=16%  Similarity=0.094  Sum_probs=31.5

Q ss_pred             CCCceeeecCCCCCCCHHHHH----HHhhcCCCcceeEEee
Q 030532          136 ENDYRLFCGDLGNEVNDDVLS----KAFSRFPSFNMAKVSF  172 (175)
Q Consensus       136 ~ndfrIFVGNLs~dVTDe~L~----~aFskYGSV~~AKVV~  172 (175)
                      +...+||||||++++++++|+    ++|++||.|.+++|..
T Consensus        27 ~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~   67 (127)
T 2a3j_A           27 EPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDL   67 (127)
T ss_dssp             SCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECC
T ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEecc
Confidence            346789999999999998865    7999999999887654

>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A

Probab=97.99  E-value=2.8e-06  Score=67.05  Aligned_cols=37  Identities=14%  Similarity=-0.041  Sum_probs=33.6

Q ss_pred             CCceeeecCCCCCCCHHHHHHHhhcCCCc--ceeEEeec
Q 030532          137 NDYRLFCGDLGNEVNDDVLSKAFSRFPSF--NMAKVSFC  173 (175)
Q Consensus       137 ndfrIFVGNLs~dVTDe~L~~aFskYGSV--~~AKVV~D  173 (175)
                      ...+||||||++++||++|+++|++||.|  .+++|+.|
T Consensus       122 p~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~~~~~  160 (205)
T 3tyt_A          122 PSNVLHFFNAPLEVTEENFFEICDELGVKRPTSVKVFSG  160 (205)
T ss_dssp             CCSEEEEEEECTTCCHHHHHHHHHHHTCCCCSEEEECSC
T ss_pred             CcceEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEEcC
Confidence            34579999999999999999999999999  88998876

>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.97  E-value=8.3e-06  Score=56.05  Aligned_cols=38  Identities=16%  Similarity=0.238  Sum_probs=32.1

Q ss_pred             CCCCCceeeecCCCCCCCHHHHHHHhhcCCCcceeEEeecC
Q 030532          134 WPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVSFCF  174 (175)
Q Consensus       134 w~~ndfrIFVGNLs~dVTDe~L~~aFskYGSV~~AKVV~D~  174 (175)
                      .+....+||||||++++|+++|+++|+.|+   .++|+.|.
T Consensus        11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~~---~~~~~~~~   48 (102)
T 2fc8_A           11 RSQPSKTLFVKGLSEDTTEETLKESFDGSV---RARIVTDR   48 (102)
T ss_dssp             SSCCCSSEEEECCCTTCCHHHHHHTSTTCS---EEEEEECS
T ss_pred             CCCCCCEEEEeCCCCccCHHHHHHHhcCCe---EEEEEecC
Confidence            456778999999999999999999999874   56777763

>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A

Probab=97.83  E-value=9.4e-06  Score=67.71  Aligned_cols=39  Identities=13%  Similarity=0.275  Sum_probs=35.2

Q ss_pred             CCCCceeeecCCCCCC---------CHHHHHHHhhcCCCcceeEEeec
Q 030532          135 PENDYRLFCGDLGNEV---------NDDVLSKAFSRFPSFNMAKVSFC  173 (175)
Q Consensus       135 ~~ndfrIFVGNLs~dV---------TDe~L~~aFskYGSV~~AKVV~D  173 (175)
                      +....+||||||+.++         +|++|+++|++||.|.+++|+.+
T Consensus       131 ~~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~~  178 (240)
T 3u1l_A          131 RKKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVES  178 (240)
T ss_dssp             CCCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEGG
T ss_pred             ccCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEECC
Confidence            4567799999999999         79999999999999999999864

>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A

Probab=97.82  E-value=7.8e-06  Score=65.10  Aligned_cols=38  Identities=3%  Similarity=0.008  Sum_probs=33.6

Q ss_pred             CCceeeecCCCCCCCHHHHHHHhhcCC-CcceeEEeecC
Q 030532          137 NDYRLFCGDLGNEVNDDVLSKAFSRFP-SFNMAKVSFCF  174 (175)
Q Consensus       137 ndfrIFVGNLs~dVTDe~L~~aFskYG-SV~~AKVV~D~  174 (175)
                      +..+||||||+.++|+++|+++|+.|| .|.+++|+.|.
T Consensus       116 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~  154 (292)
T 2ghp_A          116 TECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLR  154 (292)
T ss_dssp             CSCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC---
T ss_pred             CCCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCC
Confidence            678999999999999999999999999 99999998764

>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1

Probab=97.79  E-value=3.6e-05  Score=57.77  Aligned_cols=38  Identities=16%  Similarity=0.035  Sum_probs=34.2

Q ss_pred             CCCceeeecCCCCCCCHHHHHHHhhcCC-CcceeEEeec
Q 030532          136 ENDYRLFCGDLGNEVNDDVLSKAFSRFP-SFNMAKVSFC  173 (175)
Q Consensus       136 ~ndfrIFVGNLs~dVTDe~L~~aFskYG-SV~~AKVV~D  173 (175)
                      ....+||||||+.++|+++|+++|++|| .|..++|+.+
T Consensus       118 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~~  156 (198)
T 1qm9_A          118 PPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK  156 (198)
T ss_dssp             CCCCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESST
T ss_pred             CCccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEeC
Confidence            3467899999999999999999999999 9999998653

>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E

Probab=97.70  E-value=3.9e-05  Score=60.82  Aligned_cols=39  Identities=18%  Similarity=0.127  Sum_probs=35.2

Q ss_pred             CCCceeeecCCCCCC-CHHHHHHHhhcCCCcceeEEeecC
Q 030532          136 ENDYRLFCGDLGNEV-NDDVLSKAFSRFPSFNMAKVSFCF  174 (175)
Q Consensus       136 ~ndfrIFVGNLs~dV-TDe~L~~aFskYGSV~~AKVV~D~  174 (175)
                      ....+|||+||+.++ |+++|+++|+.||.|.+++|+.|.
T Consensus       182 ~~~~~l~v~nlp~~~~~~~~l~~~f~~~G~i~~v~i~~~~  221 (284)
T 3smz_A          182 LHSRCLCVDRLPPGFNDVDALCRALSAVHSPTFCQLACGQ  221 (284)
T ss_dssp             TSCSEEEEECCCTTCCCHHHHHHHTCSSSCCSEEEEEECS
T ss_pred             CCccEEEEecCCcccCCHHHHHHHhhCCCCeEEEEEEECC
Confidence            356689999999996 999999999999999999999874

>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A

Probab=97.63  E-value=5.8e-05  Score=59.04  Aligned_cols=36  Identities=17%  Similarity=0.067  Sum_probs=33.2

Q ss_pred             CCceeeecCCCCCCCHHHHHHHhhcCC-CcceeEEee
Q 030532          137 NDYRLFCGDLGNEVNDDVLSKAFSRFP-SFNMAKVSF  172 (175)
Q Consensus       137 ndfrIFVGNLs~dVTDe~L~~aFskYG-SV~~AKVV~  172 (175)
                      ...+|||+||+.++|+++|+++|++|| .|..++|+.
T Consensus       150 ~~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~  186 (229)
T 2adc_A          150 PSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQ  186 (229)
T ss_dssp             SCSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEEECS
T ss_pred             CCCEEEEeCCCccCCHHHHHHHHHHcCCCeeEEEEEE
Confidence            467899999999999999999999999 999999864

>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A

Probab=97.51  E-value=7.3e-05  Score=54.71  Aligned_cols=33  Identities=15%  Similarity=0.292  Sum_probs=29.1

Q ss_pred             CCCceeeecCCCCCCCHHHHHHHhhcCCCccee
Q 030532          136 ENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMA  168 (175)
Q Consensus       136 ~ndfrIFVGNLs~dVTDe~L~~aFskYGSV~~A  168 (175)
                      ....+||||||+.++|+++|+++|++||.|..+
T Consensus        97 ~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~  129 (175)
T 1fje_B           97 RAARTLLAKNLSFNITEDELKEVFEDALEIRLV  129 (175)
T ss_dssp             GGGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE
T ss_pred             ccCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe
Confidence            356789999999999999999999999987543

>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=97.38  E-value=8.8e-05  Score=56.57  Aligned_cols=38  Identities=11%  Similarity=-0.087  Sum_probs=34.5

Q ss_pred             CCceeeecCCCCC-CCHHHHHHHhhcCCCcceeEEeecC
Q 030532          137 NDYRLFCGDLGNE-VNDDVLSKAFSRFPSFNMAKVSFCF  174 (175)
Q Consensus       137 ndfrIFVGNLs~d-VTDe~L~~aFskYGSV~~AKVV~D~  174 (175)
                      ...-||||||+++ +++++|+++|++||.|..+.++.|.
T Consensus        17 ~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~   55 (121)
T 1owx_A           17 IGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGA   55 (121)
T ss_dssp             CCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTC
T ss_pred             CCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCC
Confidence            4556999999999 9999999999999999999888775

>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.24  E-value=0.00024  Score=52.98  Aligned_cols=33  Identities=9%  Similarity=0.003  Sum_probs=27.4

Q ss_pred             CCCceeeecCCCCCCCHHH----HHHHhhcCC-Cccee
Q 030532          136 ENDYRLFCGDLGNEVNDDV----LSKAFSRFP-SFNMA  168 (175)
Q Consensus       136 ~ndfrIFVGNLs~dVTDe~----L~~aFskYG-SV~~A  168 (175)
                      +++..||||||++++++++    |+++|++|| .|.++
T Consensus         7 p~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V   44 (96)
T 2diu_A            7 GCHTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI   44 (96)
T ss_dssp             CSSEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC
T ss_pred             CcceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE
Confidence            4566699999999999988    668999995 87663

>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A

Probab=96.21  E-value=0.0039  Score=44.80  Aligned_cols=36  Identities=3%  Similarity=-0.090  Sum_probs=28.7

Q ss_pred             ceeeecCCCC-----CCCHHHHHHHhhcCCCcceeEEeecC
Q 030532          139 YRLFCGDLGN-----EVNDDVLSKAFSRFPSFNMAKVSFCF  174 (175)
Q Consensus       139 frIFVGNLs~-----dVTDe~L~~aFskYGSV~~AKVV~D~  174 (175)
                      -.|+++||-.     +-++++|++.|++||.|.+++|+.|.
T Consensus         9 ~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~   49 (105)
T 2pe8_A            9 KVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIP   49 (105)
T ss_dssp             SEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECS
T ss_pred             CEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCC
Confidence            3577787763     33689999999999999999999873

>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=96.04  E-value=0.011  Score=42.59  Aligned_cols=24  Identities=17%  Similarity=0.224  Sum_probs=22.3

Q ss_pred             CCCCHHHHHHHhhcCCCcceeEEe
Q 030532          148 NEVNDDVLSKAFSRFPSFNMAKVS  171 (175)
Q Consensus       148 ~dVTDe~L~~aFskYGSV~~AKVV  171 (175)
                      .++|+++|+++|++||.|.+++|+
T Consensus        27 ~~~te~~L~~~F~~~G~V~~v~i~   50 (100)
T 2d9o_A           27 GGYSKDVLLRLLQKYGEVLNLVLS   50 (100)
T ss_dssp             CSCCHHHHHHHHHTTSCEEEEEEE
T ss_pred             CCCCHHHHHHHHHhcCCEEEEEEc
Confidence            578999999999999999999886

>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3

Probab=95.97  E-value=0.00093  Score=47.79  Aligned_cols=33  Identities=12%  Similarity=0.198  Sum_probs=27.8

Q ss_pred             eecCCCCCCCHHHHHHHh------------hcCCCcceeEEeecC
Q 030532          142 FCGDLGNEVNDDVLSKAF------------SRFPSFNMAKVSFCF  174 (175)
Q Consensus       142 FVGNLs~dVTDe~L~~aF------------skYGSV~~AKVV~D~  174 (175)
                      .++||++++++++|.+.|            ++||.|.+++|+.|.
T Consensus        19 ~~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~   63 (104)
T 1jmt_A           19 SADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNL   63 (104)
T ss_dssp             --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSS
T ss_pred             ccCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCC
Confidence            378899999998888777            999999999999874

>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=95.37  E-value=0.02  Score=40.33  Aligned_cols=37  Identities=11%  Similarity=0.172  Sum_probs=29.0

Q ss_pred             CCCceeeecCCCCCCC-----------HHHHHHHhhcCCCcceeEEeec
Q 030532          136 ENDYRLFCGDLGNEVN-----------DDVLSKAFSRFPSFNMAKVSFC  173 (175)
Q Consensus       136 ~ndfrIFVGNLs~dVT-----------De~L~~aFskYGSV~~AKVV~D  173 (175)
                      ...-.|+|.||-...+           +++|+++|++||.|.++.| .|
T Consensus        13 ~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i-~~   60 (112)
T 2dit_A           13 RHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLL-FD   60 (112)
T ss_dssp             CSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEE-ET
T ss_pred             CCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEE-ec
Confidence            4566799999944432           5899999999999999955 55

>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=93.00  E-value=0.074  Score=39.11  Aligned_cols=39  Identities=15%  Similarity=0.107  Sum_probs=30.4

Q ss_pred             CCCceeeecCCC----CCCCH----HHHHHHhhcCCCcceeEEeecC
Q 030532          136 ENDYRLFCGDLG----NEVND----DVLSKAFSRFPSFNMAKVSFCF  174 (175)
Q Consensus       136 ~ndfrIFVGNLs----~dVTD----e~L~~aFskYGSV~~AKVV~D~  174 (175)
                      +.+-+|+|--++    .+.-|    .+|.+.|++||.|..+||+.|.
T Consensus         5 Ppd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d~   51 (91)
T 2dnr_A            5 SSGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVEDK   51 (91)
T ss_dssp             CSSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSSS
T ss_pred             CCCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecCC
Confidence            456777877766    23334    7799999999999999999884

>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A

Probab=92.50  E-value=0.1  Score=38.30  Aligned_cols=23  Identities=9%  Similarity=0.099  Sum_probs=21.1

Q ss_pred             HHHHHHHhhcCCCcceeEEeecC
Q 030532          152 DDVLSKAFSRFPSFNMAKVSFCF  174 (175)
Q Consensus       152 De~L~~aFskYGSV~~AKVV~D~  174 (175)
                      +++|++.|++||.|.+++|+.|.
T Consensus        39 eedl~eef~k~G~V~~v~I~~~~   61 (118)
T 3ue2_A           39 EGEVTEECGKFGAVNRVIIYQEK   61 (118)
T ss_dssp             HHHHHHHHTTTSCEEEEEEEEEE
T ss_pred             HHHHHHHHhccCCEeEEEEeecC
Confidence            58999999999999999999873

>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A

Probab=90.71  E-value=0.11  Score=36.93  Aligned_cols=24  Identities=4%  Similarity=-0.013  Sum_probs=21.1

Q ss_pred             CHHHHHHHhhcCCCcceeEEeecC
Q 030532          151 NDDVLSKAFSRFPSFNMAKVSFCF  174 (175)
Q Consensus       151 TDe~L~~aFskYGSV~~AKVV~D~  174 (175)
                      .+++|++.|++||.|.+++|+.|.
T Consensus        28 ~~~dl~~~f~k~G~V~~v~i~~~~   51 (105)
T 3v4m_A           28 IVEDVRDECSKYGLVKSIEIPRPV   51 (105)
T ss_dssp             HHHHHHHHHHTTSCEEEEECCCCB
T ss_pred             HHHHHHHHHHccCCEEEEEEeccC
Confidence            347999999999999999998874

>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=89.29  E-value=0.14  Score=38.11  Aligned_cols=39  Identities=5%  Similarity=0.006  Sum_probs=31.3

Q ss_pred             CCCceeeecCCCCC-----CCH----HHHHHHhhcCCCcceeEEeecC
Q 030532          136 ENDYRLFCGDLGNE-----VND----DVLSKAFSRFPSFNMAKVSFCF  174 (175)
Q Consensus       136 ~ndfrIFVGNLs~d-----VTD----e~L~~aFskYGSV~~AKVV~D~  174 (175)
                      +.+-+|+|--++..     .-|    .+|.+.|+.||.|..+|++.|.
T Consensus        13 PpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~   60 (95)
T 1ufw_A           13 PLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ   60 (95)
T ss_dssp             CTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE
T ss_pred             CCCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc
Confidence            57889999988632     223    5688999999999999999874

>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A

Probab=86.88  E-value=0.38  Score=35.15  Aligned_cols=21  Identities=10%  Similarity=-0.055  Sum_probs=18.9

Q ss_pred             HHHHHHhhcCCCcceeEEeec
Q 030532          153 DVLSKAFSRFPSFNMAKVSFC  173 (175)
Q Consensus       153 e~L~~aFskYGSV~~AKVV~D  173 (175)
                      ++|++.|++||.|.+++|..|
T Consensus        32 edl~~~f~kfG~V~~v~i~~~   52 (114)
T 3s6e_A           32 DDVIEECNKHGGVIHIYVDKN   52 (114)
T ss_dssp             HHHHHHHTTTTCCSEEEECTT
T ss_pred             HHHHHHHhccCCEEEEEEecC
Confidence            789999999999999988765

>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A

Probab=80.47  E-value=0.36  Score=33.95  Aligned_cols=19  Identities=5%  Similarity=0.156  Sum_probs=0.0

Q ss_pred             CCCceeeecCCCCCCCHHH
Q 030532          136 ENDYRLFCGDLGNEVNDDV  154 (175)
Q Consensus       136 ~ndfrIFVGNLs~dVTDe~  154 (175)
                      ....+|||+||+.++|++.
T Consensus        95 ~~~~~lyv~Nl~~~~T~~a  113 (115)
T 4f25_A           95 KEFTNVYIKNFGPGSTRAA  113 (115)
T ss_dssp             -------------------
T ss_pred             CCCCceEeCCCCCCccccc
Confidence            3455799999999999874

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	175
d1fjca_	96	d.58.7.1 (A:) Nucleolin {Golden hamster (Mesocrice	7e-04
d1x4ga1	96	d.58.7.1 (A:8-103) Nucleolysin TIAR {Human (Homo s	0.002
d1no8a_	78	d.58.7.1 (A:) Nuclear factor Aly {Mouse (Mus muscu	0.004

>d1fjca_ d.58.7.1 (A:) Nucleolin {Golden hamster (Mesocricetus auratus) [TaxId: 10036]} Length = 96

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nucleolin
species: Golden hamster (Mesocricetus auratus) [TaxId: 10036]

 Score = 35.0 bits (80), Expect = 7e-04
 Identities = 8/48 (16%), Positives = 15/48 (31%)

Query: 127 EDPTLAEWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVSFCF 174
           EDP  ++       L   +L   + +D L + F       +       
Sbjct: 5   EDPCTSKKVRAARTLLAKNLSFNITEDELKEVFEDALEIRLVSQDGKS 52

>d1x4ga1 d.58.7.1 (A:8-103) Nucleolysin TIAR {Human (Homo sapiens) [TaxId: 9606]} Length = 96

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nucleolysin TIAR
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.2 bits (78), Expect = 0.002
 Identities = 7/47 (14%), Positives = 20/47 (42%)

Query: 128 DPTLAEWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVSFCF 174
           +  + +    +  ++CG + + + D ++ + FS F      +V    
Sbjct: 8   EDVVNQSSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPEK 54

>d1no8a_ d.58.7.1 (A:) Nuclear factor Aly {Mouse (Mus musculus) [TaxId: 10090]} Length = 78

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nuclear factor Aly
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 32.6 bits (74), Expect = 0.004
 Identities = 8/36 (22%), Positives = 17/36 (47%)

Query: 140 RLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVSFCFT 175
           +L   +L   V+D  + + F+ F +   A V +  +
Sbjct: 2   KLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRS 37

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	175
d2cqga1	90	TAR DNA-binding protein 43, TDP-43 {Human (Homo sa	98.86
d1x0fa1	75	Nuclear ribonucleoprotein D0 (AUF1) {Human (Homo s	98.85
d1fxla2	85	Hu antigen D (Hud) {Human (Homo sapiens) [TaxId: 9	98.85
d1cvja1	80	Poly(A)-binding protein {Human (Homo sapiens) [Tax	98.83
d1b7fa1	82	Sex-lethal protein {Drosophila melanogaster [TaxId	98.83
d1hd0a_	75	Heterogeneous nuclear ribonucleoprotein d0 {Human	98.82
d2u2fa_	85	Splicing factor U2AF 65 KDa subunit {Human (Homo s	98.82
d1l3ka1	84	Nuclear ribonucleoprotein A1 (RNP A1, UP1) {Human	98.79
d2cqia1	90	Nucleolysin TIAR {Human (Homo sapiens) [TaxId: 960	98.79
d1fxla1	82	Hu antigen D (Hud) {Human (Homo sapiens) [TaxId: 9	98.78
d2cqda1	103	RNA-binding region containing protein 1 {Human (Ho	98.78
d2cqca1	83	Arginine/serine-rich splicing factor 10 {Human (Ho	98.77
d1l3ka2	79	Nuclear ribonucleoprotein A1 (RNP A1, UP1) {Human	98.76
d1uawa_	77	Musashi-1 {Mouse (Mus musculus) [TaxId: 10090]}	98.76
d2cq3a1	93	RNA-binding protein 9 {Human (Homo sapiens) [TaxId	98.75
d1no8a_	78	Nuclear factor Aly {Mouse (Mus musculus) [TaxId: 1	98.73
d1whwa_	99	Probable RNA-binding protein 19, Rbm19 {Mouse (Mus	98.73
d2msta_	75	Neural RNA-binding protein Musashi-1 {Mouse (Mus m	98.73
d2cpfa1	85	Probable RNA-binding protein 19, Rbm19 {Mouse (Mus	98.72
d1x5ua1	93	Splicing factor 3B subunit 4 {Human (Homo sapiens)	98.71
d1x4ba1	103	Heterogeneous nuclear ribonucleoproteins A2/B1 {Hu	98.7
d1b7fa2	85	Sex-lethal protein {Drosophila melanogaster [TaxId	98.69
d1u6fa1	139	RNA-binding protein UBP1 {Trypanosoma cruzi [TaxId	98.69
d1x5sa1	90	Cold-inducible RNA-binding protein {Human (Homo sa	98.68
d1wf0a_	88	TAR DNA-binding protein 43, TDP-43 {Human (Homo sa	98.67
d1cvja2	89	Poly(A)-binding protein {Human (Homo sapiens) [Tax	98.67
d3begb1	87	Splicing factor, arginine/serine-rich 1, SFRS1 {Hu	98.65
d2cqba1	89	Peptidyl-prolyl cis-trans isomerase E, N-terminal	98.65
d2adba1	108	Polypyrimidine tract-binding protein {Human (Homo	98.64
d2cpza1	102	CUG triplet repeat RNA-binding protein 1 {Human (H	98.61
d1x5oa1	101	RNA-binding motif, single-stranded-interacting pro	98.61
d1rk8a_	88	RNA-binding protein 8 {Fruit fly (Drosophila melan	98.6
d1p1ta_	104	Cleavage stimulation factor, 64 kda subunit {Human	98.6
d2cpha1	94	Probable RNA-binding protein 19, Rbm19 {Mouse (Mus	98.59
d1h2vz_	93	CBP20, 20KDa nuclear cap-binding protein {Human (H	98.59
d2f9da1	114	Pre-mRNA branch site protein p14 {Human (Homo sapi	98.59
d2ghpa1	81	U4/U6 snRNA-associated-splicing factor PRP24 {Bake	98.58
d1x4ea1	72	RNA-binding motif, single-stranded-interacting pro	98.57
d1x4ha1	98	RNA-binding protein 28 {Mouse (Mus musculus) [TaxI	98.57
d1x4ga1	96	Nucleolysin TIAR {Human (Homo sapiens) [TaxId: 960	98.57
d2cq4a1	101	RNA binding protein 23 {Human (Homo sapiens) [TaxI	98.54
d2cpja1	86	Non-POU domain-containing octamer-binding protein,	98.54
d1x4aa1	95	Splicing factor, arginine/serine-rich 1, SFRS1 {Hu	98.54
d2cq0a1	90	Eukaryotic translation initiation factor 3 subunit	98.54
d2b0ga1	83	Splicesomal U1A protein {Drosophila melanogaster [	98.53
d1x5ta1	83	Splicing factor 3B subunit 4 {Human (Homo sapiens)	98.48
d1fjeb1	91	Nucleolin {Golden hamster (Mesocricetus auratus) [	98.48
d2adca1	109	Polypyrimidine tract-binding protein {Human (Homo	98.47
d1zh5a2	85	Lupus LA protein {Human (Homo sapiens) [TaxId: 960	98.46
d1fjca_	96	Nucleolin {Golden hamster (Mesocricetus auratus) [	98.46
d2cqha1	80	IGF-II mRNA-binding protein 2 isoform A {Human (Ho	98.44
d1wg4a_	98	Splicing factor, arginine/serine-rich 9 (SFRS9) {M	98.44
d2ghpa2	75	U4/U6 snRNA-associated-splicing factor PRP24 {Bake	98.43
d2disa1	96	Hypothetical protein FLJ20273 {Human (Homo sapiens	98.42
d1wi8a_	104	Eukaryotic translation initiation factor 4B {Human	98.41
d1whya_	97	Putative RNA-binding protein 15B, Rbm15b {Mouse (M	98.4
d1whxa_	111	Probable RNA-binding protein 19, Rbm19 {Mouse (Mus	98.37
d2ghpa3	86	U4/U6 snRNA-associated-splicing factor PRP24 {Bake	98.37
d2cq1a1	88	Polypyrimidine tract-binding protein 2, PTBP2 {Hum	98.36
d2cpia1	89	E3 ubiquitin protein ligase CNOT4 {Mouse (Mus musc	98.34
d2cq2a1	101	Alkylation repair AlkB homolog 8, ALKBH8 {Human (H	98.34
d1owxa_	113	Lupus LA protein {Human (Homo sapiens) [TaxId: 960	98.3
d2cpea1	101	RNA-binding protein EWS {Human (Homo sapiens) [Tax	98.3
d2adca2	88	Polypyrimidine tract-binding protein {Human (Homo	98.26
d1u1qa_	183	Nuclear ribonucleoprotein A1 (RNP A1, UP1) {Human	98.26
d1u2fa_	90	Splicing factor U2AF 65 KDa subunit {Human (Homo s	98.2
d1wf2a_	98	Heterogeneous nuclear ribonucleoproteins C1/C2 {Hu	98.18
d2cpxa1	102	RNA-binding protein 41, RBM41 {Human (Homo sapiens	98.17
d1x4fa1	99	Matrin 3 {Mouse (Mus musculus) [TaxId: 10090]}	98.16
d2bz2a1	79	Negative elongation factor E, NELF-E {Human (Homo	98.15
d1wexa_	104	Heterogeneous nuclear ribonucleoprotein L-like {Mo	98.11
d2cpda1	86	APOBEC1 stimulating protein {Human (Homo sapiens)	98.11
d1wg5a_	104	Heterogeneous nuclear ribonucleoprotein H' {Human	98.11
d1weza_	102	Heterogeneous nuclear ribonucleoprotein H' {Human	98.1
d2cpya1	103	RNA-binding protein 12 {Human (Homo sapiens) [TaxI	98.1
d1wg1a_	88	Probable RNA-binding protein KIAA1579 {Human (Homo	98.08
d1wi6a1	75	Ribonucleoprotein PTB-binding 1, Raver-1 {Mouse (M	97.98
d2cqpa1	86	RNA-binding protein 12 {Mouse (Mus musculus) [TaxI	97.97
d1nu4a_	91	Splicesomal U1A protein {Human (Homo sapiens) [Tax	97.95
d1x4da1	89	Matrin 3 {Mouse (Mus musculus) [TaxId: 10090]}	97.92
d1wela1	112	RNA-binding protein 12 {Human (Homo sapiens) [TaxI	97.91
d1weya_	104	Calcipressin-1 {Mouse (Mus musculus) [TaxId: 10090	97.69
d1wwha1	81	Nucleoporin 35 {Mouse (Mus musculus) [TaxId: 10090	97.08
U2AF35 (35 KDa subunit) {Human (Homo sapiens) [TaxId: 9606]}" target="_blank" href="http://scop.mrc-lmb.cam.ac.uk/scop/search.cgi?sid=d1jmta_">d1jmta_	104	U2	96.68
d1o0pa_	104	Splicing factor U2AF 65 KDa subunit {Human (Homo s	88.51
d2dita1	99	HIV Tat-specific factor 1 {Human (Homo sapiens) [T	86.62

>d2cqga1 d.58.7.1 (A:96-185) TAR DNA-binding protein 43, TDP-43 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: TAR DNA-binding protein 43, TDP-43
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.86  E-value=1.1e-09  Score=76.04  Aligned_cols=39  Identities=21%  Similarity=0.189  Sum_probs=36.4

Q ss_pred             CCCceeeecCCCCCCCHHHHHHHhhcCCCcceeEEeecC
Q 030532          136 ENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVSFCF  174 (175)
Q Consensus       136 ~ndfrIFVGNLs~dVTDe~L~~aFskYGSV~~AKVV~D~  174 (175)
                      ....+||||||++++||++|+++|++||.|.+++|++|.
T Consensus         6 ~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~d~   44 (90)
T d2cqga1           6 QKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDL   44 (90)
T ss_dssp             CCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECS
T ss_pred             cCCCeEEEECCCCCCCHHHHHHHHHhhcccceeeeccCC
Confidence            456789999999999999999999999999999999985

>d1x0fa1 d.58.7.1 (A:183-257) Nuclear ribonucleoprotein D0 (AUF1) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nuclear ribonucleoprotein D0 (AUF1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.85  E-value=5e-10  Score=75.65  Aligned_cols=35  Identities=14%  Similarity=0.376  Sum_probs=33.6

Q ss_pred             eeeecCCCCCCCHHHHHHHhhcCCCcceeEEeecC
Q 030532          140 RLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVSFCF  174 (175)
Q Consensus       140 rIFVGNLs~dVTDe~L~~aFskYGSV~~AKVV~D~  174 (175)
                      +||||||++++||++|+++|++||.|.+++|++|.
T Consensus         1 klfVgnLp~~~te~~l~~~F~~~G~I~~v~i~~d~   35 (75)
T d1x0fa1           1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDN   35 (75)
T ss_dssp             EEEEESCCSSCCHHHHHHHHHHHSCEEEEECCCCT
T ss_pred             CEEEcCCCCCCCHHHHHHHHHHhCCcccccccccc
Confidence            69999999999999999999999999999999884

>d1fxla2 d.58.7.1 (A:119-203) Hu antigen D (Hud) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Hu antigen D (Hud)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.85  E-value=1.2e-09  Score=74.20  Aligned_cols=37  Identities=16%  Similarity=0.293  Sum_probs=34.9

Q ss_pred             CceeeecCCCCCCCHHHHHHHhhcCCCcceeEEeecC
Q 030532          138 DYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVSFCF  174 (175)
Q Consensus       138 dfrIFVGNLs~dVTDe~L~~aFskYGSV~~AKVV~D~  174 (175)
                      +.+||||||+.++|+++|+++|++||.|.+++|+.|.
T Consensus         6 ~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~   42 (85)
T d1fxla2           6 DANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQ   42 (85)
T ss_dssp             TCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECT
T ss_pred             CCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccccc
Confidence            4579999999999999999999999999999999985

>d1cvja1 d.58.7.1 (A:11-90) Poly(A)-binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Poly(A)-binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.83  E-value=1.4e-09  Score=73.01  Aligned_cols=35  Identities=26%  Similarity=0.357  Sum_probs=33.7

Q ss_pred             eeeecCCCCCCCHHHHHHHhhcCCCcceeEEeecC
Q 030532          140 RLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVSFCF  174 (175)
Q Consensus       140 rIFVGNLs~dVTDe~L~~aFskYGSV~~AKVV~D~  174 (175)
                      +||||||++++||++|+++|++||.|.+++|++|.
T Consensus         2 slfV~nL~~~~te~~l~~~F~~~G~i~~v~i~~d~   36 (80)
T d1cvja1           2 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDM   36 (80)
T ss_dssp             EEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECT
T ss_pred             EEEEeCCCCcCCHHHHHHHHHHhCCEeEEEEEecc
Confidence            79999999999999999999999999999999985

>d1b7fa1 d.58.7.1 (A:123-204) Sex-lethal protein {Drosophila melanogaster [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Sex-lethal protein
species: Drosophila melanogaster [TaxId: 7227]

Probab=98.83  E-value=1.2e-09  Score=72.80  Aligned_cols=37  Identities=16%  Similarity=0.253  Sum_probs=34.8

Q ss_pred             CceeeecCCCCCCCHHHHHHHhhcCCCcceeEEeecC
Q 030532          138 DYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVSFCF  174 (175)
Q Consensus       138 dfrIFVGNLs~dVTDe~L~~aFskYGSV~~AKVV~D~  174 (175)
                      +.+||||||+.++|+++|+++|++||.|.+++|+.|.
T Consensus         2 ~t~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~~   38 (82)
T d1b7fa1           2 NTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDY   38 (82)
T ss_dssp             CSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEET
T ss_pred             CCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeeeeec
Confidence            5689999999999999999999999999999999874

>d1hd0a_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein d0 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Heterogeneous nuclear ribonucleoprotein d0
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.82  E-value=1.1e-09  Score=73.08  Aligned_cols=35  Identities=20%  Similarity=0.311  Sum_probs=33.6

Q ss_pred             eeeecCCCCCCCHHHHHHHhhcCCCcceeEEeecC
Q 030532          140 RLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVSFCF  174 (175)
Q Consensus       140 rIFVGNLs~dVTDe~L~~aFskYGSV~~AKVV~D~  174 (175)
                      |||||||++++||++|+++|++||.|.+++|++|.
T Consensus         1 klfV~nl~~~~te~~l~~~F~~~G~i~~~~i~~d~   35 (75)
T d1hd0a_           1 KMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDP   35 (75)
T ss_dssp             CEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCBT
T ss_pred             CEEEeCCCCcCCHHHHHHHHHhhccccccccccCC
Confidence            69999999999999999999999999999999885

>d2u2fa_ d.58.7.1 (A:) Splicing factor U2AF 65 KDa subunit {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Splicing factor U2AF 65 KDa subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.82  E-value=1.3e-09  Score=74.34  Aligned_cols=36  Identities=25%  Similarity=0.346  Sum_probs=34.3

Q ss_pred             ceeeecCCCCCCCHHHHHHHhhcCCCcceeEEeecC
Q 030532          139 YRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVSFCF  174 (175)
Q Consensus       139 frIFVGNLs~dVTDe~L~~aFskYGSV~~AKVV~D~  174 (175)
                      +|||||||++++||++|+++|++||.|.+++|+.|.
T Consensus         2 ~rlfV~nlp~~~te~~l~~~F~~~G~v~~v~i~~d~   37 (85)
T d2u2fa_           2 HKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDS   37 (85)
T ss_dssp             CCEEEETCCSSCCSHHHHHHHTSSSCEEEEEEECCC
T ss_pred             CEEEEECCCCCCCHHHHHHHHHhcCccceEEeeccc
Confidence            589999999999999999999999999999999884

>d1l3ka1 d.58.7.1 (A:8-91) Nuclear ribonucleoprotein A1 (RNP A1, UP1) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nuclear ribonucleoprotein A1 (RNP A1, UP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.79  E-value=2.1e-09  Score=73.19  Aligned_cols=38  Identities=24%  Similarity=0.277  Sum_probs=35.3

Q ss_pred             CCceeeecCCCCCCCHHHHHHHhhcCCCcceeEEeecC
Q 030532          137 NDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVSFCF  174 (175)
Q Consensus       137 ndfrIFVGNLs~dVTDe~L~~aFskYGSV~~AKVV~D~  174 (175)
                      +.-+||||||++++|+++|.++|++||.|.+++|++|.
T Consensus         5 ~~~~lfV~nlp~~~te~~l~~~F~~~G~i~~v~i~~d~   42 (84)
T d1l3ka1           5 QLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDP   42 (84)
T ss_dssp             GGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECT
T ss_pred             CCcEEEEECCCCCCCHHHHHHHHHhhccccceeecccc
Confidence            34589999999999999999999999999999999885

>d2cqia1 d.58.7.1 (A:1-90) Nucleolysin TIAR {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nucleolysin TIAR
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.79  E-value=2.6e-09  Score=73.02  Aligned_cols=42  Identities=19%  Similarity=0.271  Sum_probs=38.0

Q ss_pred             CCCCCCceeeecCCCCCCCHHHHHHHhhcCCCcceeEEeecC
Q 030532          133 EWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVSFCF  174 (175)
Q Consensus       133 Ew~~ndfrIFVGNLs~dVTDe~L~~aFskYGSV~~AKVV~D~  174 (175)
                      |.+.+..+||||||+.++||++|+++|++||.|.+++|+.|.
T Consensus         3 ~d~~~~~tl~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~d~   44 (90)
T d2cqia1           3 EDDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEH   44 (90)
T ss_dssp             CCSCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCC
T ss_pred             CCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCceeeeeeccc
Confidence            455667799999999999999999999999999999999874

>d1fxla1 d.58.7.1 (A:37-118) Hu antigen D (Hud) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Hu antigen D (Hud)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.78  E-value=2.8e-09  Score=70.85  Aligned_cols=36  Identities=11%  Similarity=0.110  Sum_probs=34.1

Q ss_pred             ceeeecCCCCCCCHHHHHHHhhcCCCcceeEEeecC
Q 030532          139 YRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVSFCF  174 (175)
Q Consensus       139 frIFVGNLs~dVTDe~L~~aFskYGSV~~AKVV~D~  174 (175)
                      .+||||||+.++||++|+++|++||.|.+++|+.|.
T Consensus         3 t~l~V~nLp~~~te~~l~~~f~~~G~v~~v~i~~~~   38 (82)
T d1fxla1           3 TNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDK   38 (82)
T ss_dssp             SEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECT
T ss_pred             CEEEEECCCCCCCHHHHHHHHHHhCCcccccceeec
Confidence            479999999999999999999999999999999885

>d2cqda1 d.58.7.1 (A:1-103) RNA-binding region containing protein 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding region containing protein 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.78  E-value=3.2e-09  Score=74.59  Aligned_cols=39  Identities=26%  Similarity=0.250  Sum_probs=35.8

Q ss_pred             CCCceeeecCCCCCCCHHHHHHHhhcCCCcceeEEeecC
Q 030532          136 ENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVSFCF  174 (175)
Q Consensus       136 ~ndfrIFVGNLs~dVTDe~L~~aFskYGSV~~AKVV~D~  174 (175)
                      .+..+||||||++++||++|+++|++||.|.+++|+.|.
T Consensus         8 ~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~d~   46 (103)
T d2cqda1           8 TTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDR   46 (103)
T ss_dssp             CSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCS
T ss_pred             CCCcEEEEeCCCCcCcHHHHHHHHhhcccccceeccccc
Confidence            455679999999999999999999999999999999884

>d2cqca1 d.58.7.1 (A:109-191) Arginine/serine-rich splicing factor 10 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Arginine/serine-rich splicing factor 10
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.77  E-value=3.5e-09  Score=71.10  Aligned_cols=39  Identities=13%  Similarity=0.121  Sum_probs=35.9

Q ss_pred             CCCceeeecCCCCCCCHHHHHHHhhcCCCcceeEEeecC
Q 030532          136 ENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVSFCF  174 (175)
Q Consensus       136 ~ndfrIFVGNLs~dVTDe~L~~aFskYGSV~~AKVV~D~  174 (175)
                      ....+||||||+.++||++|+++|++||.|.+++|+.|.
T Consensus         7 ~~~~~l~V~nL~~~~te~~l~~~F~~~G~i~~v~i~~~~   45 (83)
T d2cqca1           7 DPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQ   45 (83)
T ss_dssp             CGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECS
T ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHHHhCCCccccccccc
Confidence            346789999999999999999999999999999999874

>d1l3ka2 d.58.7.1 (A:103-181) Nuclear ribonucleoprotein A1 (RNP A1, UP1) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nuclear ribonucleoprotein A1 (RNP A1, UP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.76  E-value=3.1e-09  Score=70.36  Aligned_cols=36  Identities=11%  Similarity=0.333  Sum_probs=33.8

Q ss_pred             ceeeecCCCCCCCHHHHHHHhhcCCCcceeEEeecC
Q 030532          139 YRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVSFCF  174 (175)
Q Consensus       139 frIFVGNLs~dVTDe~L~~aFskYGSV~~AKVV~D~  174 (175)
                      -+||||||++++||++|+++|++||.+..++++.|.
T Consensus         3 r~lfV~nLp~~~te~~l~~~F~~~G~i~~~~~~~~~   38 (79)
T d1l3ka2           3 KKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDR   38 (79)
T ss_dssp             SEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECT
T ss_pred             CEEEECCCCCcCCHHHHHHHHHHhccccccccccCC
Confidence            379999999999999999999999999999998874

>d1uawa_ d.58.7.1 (A:) Musashi-1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Musashi-1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.76  E-value=2.3e-09  Score=72.33  Aligned_cols=36  Identities=19%  Similarity=0.255  Sum_probs=34.1

Q ss_pred             ceeeecCCCCCCCHHHHHHHhhcCCCcceeEEeecC
Q 030532          139 YRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVSFCF  174 (175)
Q Consensus       139 frIFVGNLs~dVTDe~L~~aFskYGSV~~AKVV~D~  174 (175)
                      .+||||||++++||++|+++|++||.|.+++|++|.
T Consensus         1 cklfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~d~   36 (77)
T d1uawa_           1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDP   36 (77)
T ss_dssp             CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCC
T ss_pred             CEEEEeCCCCcCCHHHHHHHHHHhCCcceeeeeccc
Confidence            379999999999999999999999999999999985

>d2cq3a1 d.58.7.1 (A:110-202) RNA-binding protein 9 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding protein 9
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.75  E-value=5.6e-09  Score=71.92  Aligned_cols=42  Identities=19%  Similarity=0.214  Sum_probs=37.8

Q ss_pred             CCCCCCceeeecCCCCCCCHHHHHHHhhcCCCcceeEEeecC
Q 030532          133 EWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVSFCF  174 (175)
Q Consensus       133 Ew~~ndfrIFVGNLs~dVTDe~L~~aFskYGSV~~AKVV~D~  174 (175)
                      +......+||||||++++|+++|+++|++||.|.+++|+.|.
T Consensus         6 ~~~~~~~~l~v~nLp~~~t~~~L~~~F~~~G~v~~v~~~~~~   47 (93)
T d2cq3a1           6 ESKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNE   47 (93)
T ss_dssp             CCSCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCT
T ss_pred             CCCCCCCEEEEECCCCCCCHHHHHHHHhhcceeeeccccccc
Confidence            344567799999999999999999999999999999999874

>d1no8a_ d.58.7.1 (A:) Nuclear factor Aly {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nuclear factor Aly
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.73  E-value=2.8e-09  Score=71.33  Aligned_cols=35  Identities=23%  Similarity=0.392  Sum_probs=33.6

Q ss_pred             eeeecCCCCCCCHHHHHHHhhcCCCcceeEEeecC
Q 030532          140 RLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVSFCF  174 (175)
Q Consensus       140 rIFVGNLs~dVTDe~L~~aFskYGSV~~AKVV~D~  174 (175)
                      |||||||++++|+++|+++|++||.|.+++|+.|.
T Consensus         2 rl~V~nLp~~~~~~~l~~~F~~~G~v~~~~i~~~~   36 (78)
T d1no8a_           2 KLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDR   36 (78)
T ss_dssp             EEEEESCCTTCCHHHHHHHHHHHSCEEEEEESCSS
T ss_pred             EEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEee
Confidence            79999999999999999999999999999999875

>d1whwa_ d.58.7.1 (A:) Probable RNA-binding protein 19, Rbm19 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Probable RNA-binding protein 19, Rbm19
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.73  E-value=4.5e-09  Score=72.76  Aligned_cols=41  Identities=20%  Similarity=0.237  Sum_probs=37.1

Q ss_pred             CCCCCceeeecCCCCCCCHHHHHHHhhcCCCcceeEEeecC
Q 030532          134 WPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVSFCF  174 (175)
Q Consensus       134 w~~ndfrIFVGNLs~dVTDe~L~~aFskYGSV~~AKVV~D~  174 (175)
                      ++....+||||||++++|+++|+++|++||.|.+++|+.|.
T Consensus         4 ~~~~~~~lfV~nL~~~~t~~~l~~~F~~~g~v~~v~i~~d~   44 (99)
T d1whwa_           4 GSSGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDS   44 (99)
T ss_dssp             CCCSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCT
T ss_pred             CCCCCCEEEEECCCCcCCHHHHHHHHHhcCCceeeeecccc
Confidence            34567789999999999999999999999999999999874

>d2msta_ d.58.7.1 (A:) Neural RNA-binding protein Musashi-1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Neural RNA-binding protein Musashi-1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.73  E-value=2.9e-09  Score=69.49  Aligned_cols=35  Identities=20%  Similarity=0.338  Sum_probs=32.9

Q ss_pred             eeeecCCCCCCCHHHHHHHhhcCCCcceeEEeecC
Q 030532          140 RLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVSFCF  174 (175)
Q Consensus       140 rIFVGNLs~dVTDe~L~~aFskYGSV~~AKVV~D~  174 (175)
                      |||||||++++||++|+++|++||.+..+++++|.
T Consensus         1 rlfV~nLp~~~te~~l~~~F~~~G~i~~~~~~~~~   35 (75)
T d2msta_           1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDK   35 (75)
T ss_dssp             CEEEECCCSSCCHHHHHHHHHTTSCCSEECCBCCT
T ss_pred             CEEEeCCCCCCCHHHHHHHHHHhCCcceeeeeeec
Confidence            79999999999999999999999999999888764

>d2cpfa1 d.58.7.1 (A:362-446) Probable RNA-binding protein 19, Rbm19 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Probable RNA-binding protein 19, Rbm19
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.72  E-value=4.5e-09  Score=70.63  Aligned_cols=34  Identities=21%  Similarity=0.295  Sum_probs=32.5

Q ss_pred             eeecCCCCCCCHHHHHHHhhcCCCcceeEEeecC
Q 030532          141 LFCGDLGNEVNDDVLSKAFSRFPSFNMAKVSFCF  174 (175)
Q Consensus       141 IFVGNLs~dVTDe~L~~aFskYGSV~~AKVV~D~  174 (175)
                      ||||||++++|+++|+++|++||.|.+++|++|.
T Consensus         1 LfV~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~~   34 (85)
T d2cpfa1           1 LFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKK   34 (85)
T ss_dssp             EEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEE
T ss_pred             CEEcCCCCCCCHHHHHHHHHHhCCccccceeccc
Confidence            8999999999999999999999999999999874

>d1x5ua1 d.58.7.1 (A:7-99) Splicing factor 3B subunit 4 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Splicing factor 3B subunit 4
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.71  E-value=6.1e-09  Score=71.88  Aligned_cols=38  Identities=16%  Similarity=0.210  Sum_probs=35.6

Q ss_pred             CCceeeecCCCCCCCHHHHHHHhhcCCCcceeEEeecC
Q 030532          137 NDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVSFCF  174 (175)
Q Consensus       137 ndfrIFVGNLs~dVTDe~L~~aFskYGSV~~AKVV~D~  174 (175)
                      .+.+||||||+.++|+++|+++|++||.|.+++|+.|.
T Consensus         8 ~~~tlfV~nLp~~~t~~~l~~~F~~~G~v~~v~~~~d~   45 (93)
T d1x5ua1           8 QDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDR   45 (93)
T ss_dssp             TTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCS
T ss_pred             CCCEEEEeCCCCcCCHHHHHHHHHHhCCccccceeecc
Confidence            46799999999999999999999999999999999874

>d1x4ba1 d.58.7.1 (A:8-110) Heterogeneous nuclear ribonucleoproteins A2/B1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Heterogeneous nuclear ribonucleoproteins A2/B1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.70  E-value=5.7e-09  Score=74.07  Aligned_cols=37  Identities=19%  Similarity=0.220  Sum_probs=34.7

Q ss_pred             CceeeecCCCCCCCHHHHHHHhhcCCCcceeEEeecC
Q 030532          138 DYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVSFCF  174 (175)
Q Consensus       138 dfrIFVGNLs~dVTDe~L~~aFskYGSV~~AKVV~D~  174 (175)
                      ..+||||||++++|+++|+++|++||.|..++|++|.
T Consensus        20 ~~~lfVgnLp~~~te~~L~~~F~~~G~i~~~~i~~d~   56 (103)
T d1x4ba1          20 FRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDP   56 (103)
T ss_dssp             HTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCT
T ss_pred             CCEEEEeCCCCcCCHHHHHHHHHhhCcccceeecccc
Confidence            3589999999999999999999999999999999884

>d1b7fa2 d.58.7.1 (A:205-289) Sex-lethal protein {Drosophila melanogaster [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Sex-lethal protein
species: Drosophila melanogaster [TaxId: 7227]

Probab=98.69  E-value=8.6e-09  Score=69.56  Aligned_cols=38  Identities=21%  Similarity=0.329  Sum_probs=35.2

Q ss_pred             CCceeeecCCCCCCCHHHHHHHhhcCCCcceeEEeecC
Q 030532          137 NDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVSFCF  174 (175)
Q Consensus       137 ndfrIFVGNLs~dVTDe~L~~aFskYGSV~~AKVV~D~  174 (175)
                      .+.+||||||++++||++|+++|++||.|.+++|+.|.
T Consensus         5 ~~t~lfV~nlp~~~te~~l~~~F~~~G~i~~~~~~~d~   42 (85)
T d1b7fa2           5 KDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDK   42 (85)
T ss_dssp             TTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECT
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhhCCEeeeeeeccc
Confidence            45579999999999999999999999999999999874

>d1u6fa1 d.58.7.1 (A:1-139) RNA-binding protein UBP1 {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding protein UBP1
species: Trypanosoma cruzi [TaxId: 5693]

Probab=98.69  E-value=1.1e-08  Score=74.29  Aligned_cols=36  Identities=17%  Similarity=0.241  Sum_probs=34.0

Q ss_pred             ceeeecCCCCCCCHHHHHHHhhcCCCcceeEEeecC
Q 030532          139 YRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVSFCF  174 (175)
Q Consensus       139 frIFVGNLs~dVTDe~L~~aFskYGSV~~AKVV~D~  174 (175)
                      .+||||||++++||++|+++|++||.|.+++|+.|.
T Consensus        43 ~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~d~   78 (139)
T d1u6fa1          43 RNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDR   78 (139)
T ss_dssp             SEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEET
T ss_pred             CEEEEeCCCCCCCHHHHHHHHHhhcccccccccccc
Confidence            469999999999999999999999999999999874

>d1x5sa1 d.58.7.1 (A:8-97) Cold-inducible RNA-binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Cold-inducible RNA-binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.68  E-value=7.3e-09  Score=70.21  Aligned_cols=39  Identities=23%  Similarity=0.380  Sum_probs=35.8

Q ss_pred             CCCceeeecCCCCCCCHHHHHHHhhcCCCcceeEEeecC
Q 030532          136 ENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVSFCF  174 (175)
Q Consensus       136 ~ndfrIFVGNLs~dVTDe~L~~aFskYGSV~~AKVV~D~  174 (175)
                      +++.+||||||++++|+++|.++|++||.|.+++++.+.
T Consensus         3 ~~~~kifV~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~   41 (90)
T d1x5sa1           3 SDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDR   41 (90)
T ss_dssp             CCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCS
T ss_pred             CCCCEEEEECCCCcCCHHHHHHhhhccccccceeecccc
Confidence            467889999999999999999999999999999988763

>d1wf0a_ d.58.7.1 (A:) TAR DNA-binding protein 43, TDP-43 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: TAR DNA-binding protein 43, TDP-43
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.67  E-value=7.4e-09  Score=70.66  Aligned_cols=38  Identities=16%  Similarity=0.244  Sum_probs=34.2

Q ss_pred             CCCceeeecCCCCCCCHHHHHHHhhcCCCcceeEEeec
Q 030532          136 ENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVSFC  173 (175)
Q Consensus       136 ~ndfrIFVGNLs~dVTDe~L~~aFskYGSV~~AKVV~D  173 (175)
                      ....+||||||++++||++|+++|++||.|.+++++.+
T Consensus         3 ~~s~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~~~~~   40 (88)
T d1wf0a_           3 SGSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP   40 (88)
T ss_dssp             SCCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS
T ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEeec
Confidence            35679999999999999999999999999999887654

>d1cvja2 d.58.7.1 (A:91-179) Poly(A)-binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Poly(A)-binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.67  E-value=9.4e-09  Score=70.08  Aligned_cols=38  Identities=21%  Similarity=0.262  Sum_probs=35.0

Q ss_pred             CCceeeecCCCCCCCHHHHHHHhhcCCCcceeEEeecC
Q 030532          137 NDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVSFCF  174 (175)
Q Consensus       137 ndfrIFVGNLs~dVTDe~L~~aFskYGSV~~AKVV~D~  174 (175)
                      ...+||||||++++|+++|+++|++||.|.+++|+.|.
T Consensus         7 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~~   44 (89)
T d1cvja2           7 GVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE   44 (89)
T ss_dssp             TTTEEEEESCCSSCCHHHHHHHHHTTSCEEEEEECCBT
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhcCCceEEEEEeec
Confidence            34579999999999999999999999999999999874

>d3begb1 d.58.7.1 (B:121-207) Splicing factor, arginine/serine-rich 1, SFRS1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Splicing factor, arginine/serine-rich 1, SFRS1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.65  E-value=4.1e-09  Score=71.84  Aligned_cols=34  Identities=15%  Similarity=-0.022  Sum_probs=32.6

Q ss_pred             eeeecCCCCCCCHHHHHHHhhcCCCcceeEEeec
Q 030532          140 RLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVSFC  173 (175)
Q Consensus       140 rIFVGNLs~dVTDe~L~~aFskYGSV~~AKVV~D  173 (175)
                      +||||||++++|+++|+++|++||.|..++|+.|
T Consensus         2 rvfV~nlp~~~~~~~l~~~F~~~G~v~~~~i~~~   35 (87)
T d3begb1           2 RVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD   35 (87)
T ss_dssp             CEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT
T ss_pred             eEEEECCCCcCCHHHHHHHHhhhccccccccccc
Confidence            7999999999999999999999999999999876

>d2cqba1 d.58.7.1 (A:1-89) Peptidyl-prolyl cis-trans isomerase E, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Peptidyl-prolyl cis-trans isomerase E, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.65  E-value=9.4e-09  Score=70.06  Aligned_cols=38  Identities=29%  Similarity=0.516  Sum_probs=35.1

Q ss_pred             CCceeeecCCCCCCCHHHHHHHhhcCCCcceeEEeecC
Q 030532          137 NDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVSFCF  174 (175)
Q Consensus       137 ndfrIFVGNLs~dVTDe~L~~aFskYGSV~~AKVV~D~  174 (175)
                      ..-+||||||++++||++|+++|++||.|.+++|+.|.
T Consensus         4 ~~~tlfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~d~   41 (89)
T d2cqba1           4 TKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDY   41 (89)
T ss_dssp             CCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCS
T ss_pred             CCcEEEEeCCCCcCCHHHHHHHHhhCCeEEeccccccc
Confidence            34579999999999999999999999999999999875

>d2adba1 d.58.7.1 (A:177-284) Polypyrimidine tract-binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Polypyrimidine tract-binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.64  E-value=8.7e-09  Score=72.47  Aligned_cols=38  Identities=24%  Similarity=0.173  Sum_probs=34.8

Q ss_pred             CCCceeeecCCCCCCCHHHHHHHhhcCCCcceeEEeec
Q 030532          136 ENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVSFC  173 (175)
Q Consensus       136 ~ndfrIFVGNLs~dVTDe~L~~aFskYGSV~~AKVV~D  173 (175)
                      ..-.+||||||+++|||++|+++|++||.|.+++|+.+
T Consensus         5 s~~~~v~V~NL~~~vte~~L~~~F~~~G~i~~~~i~~~   42 (108)
T d2adba1           5 SPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK   42 (108)
T ss_dssp             CCEEEEESCSCCSTTHHHHHHHHHTTTSCEEEEEEEEE
T ss_pred             CCeEEEEEeCcCCCCCHHHHHHHHccCCcEEEEEEEee
Confidence            35568999999999999999999999999999999875

>d2cpza1 d.58.7.1 (A:383-484) CUG triplet repeat RNA-binding protein 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: CUG triplet repeat RNA-binding protein 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.61  E-value=2e-08  Score=70.32  Aligned_cols=38  Identities=29%  Similarity=0.232  Sum_probs=35.1

Q ss_pred             CCceeeecCCCCCCCHHHHHHHhhcCCCcceeEEeecC
Q 030532          137 NDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVSFCF  174 (175)
Q Consensus       137 ndfrIFVGNLs~dVTDe~L~~aFskYGSV~~AKVV~D~  174 (175)
                      ...+||||||++++||++|+++|++||.|.++++++|.
T Consensus        17 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~~~~~~~~   54 (102)
T d2cpza1          17 EGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDK   54 (102)
T ss_dssp             TTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECS
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhhccccccceeeec
Confidence            34589999999999999999999999999999999874

>d1x5oa1 d.58.7.1 (A:8-108) RNA-binding motif, single-stranded-interacting protein 1, RBMS1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding motif, single-stranded-interacting protein 1, RBMS1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.61  E-value=1.9e-08  Score=70.09  Aligned_cols=38  Identities=11%  Similarity=0.157  Sum_probs=34.7

Q ss_pred             CCceeeecCCCCCCCHHHHHHHhhcCCCcceeEEeecC
Q 030532          137 NDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVSFCF  174 (175)
Q Consensus       137 ndfrIFVGNLs~dVTDe~L~~aFskYGSV~~AKVV~D~  174 (175)
                      +..+||||||+.++|+++|+++|++||.|..++++.|.
T Consensus        17 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~   54 (101)
T d1x5oa1          17 DPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDS   54 (101)
T ss_dssp             CTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECS
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHhhcccccceeeeccc
Confidence            45689999999999999999999999999999988774

>d1rk8a_ d.58.7.1 (A:) RNA-binding protein 8 {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding protein 8
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.60  E-value=2e-08  Score=68.41  Aligned_cols=38  Identities=13%  Similarity=0.329  Sum_probs=35.0

Q ss_pred             CCceeeecCCCCCCCHHHHHHHhhcCCCcceeEEeecC
Q 030532          137 NDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVSFCF  174 (175)
Q Consensus       137 ndfrIFVGNLs~dVTDe~L~~aFskYGSV~~AKVV~D~  174 (175)
                      +...||||||+.++|+++|+++|++||.|.+++|++|.
T Consensus         6 ~~~~l~V~nL~~~~t~~~l~~~F~~~G~i~~v~i~~d~   43 (88)
T d1rk8a_           6 EGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDR   43 (88)
T ss_dssp             -CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECT
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHHcCCcccccccccc
Confidence            45789999999999999999999999999999999884

>d1p1ta_ d.58.7.1 (A:) Cleavage stimulation factor, 64 kda subunit {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Cleavage stimulation factor, 64 kda subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.60  E-value=1.8e-08  Score=70.09  Aligned_cols=36  Identities=17%  Similarity=0.300  Sum_probs=33.8

Q ss_pred             ceeeecCCCCCCCHHHHHHHhhcCCCcceeEEeecC
Q 030532          139 YRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVSFCF  174 (175)
Q Consensus       139 frIFVGNLs~dVTDe~L~~aFskYGSV~~AKVV~D~  174 (175)
                      -+||||||++++|+++|.++|++||.|.+++|++|.
T Consensus         9 rtl~V~nLp~~~te~~l~~~f~~~G~i~~v~i~~~~   44 (104)
T d1p1ta_           9 RSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDR   44 (104)
T ss_dssp             SCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEET
T ss_pred             CEEEEECCCCcCCHHHHHHhhhcccccccccccccc
Confidence            369999999999999999999999999999999874

>d2cpha1 d.58.7.1 (A:454-547) Probable RNA-binding protein 19, Rbm19 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Probable RNA-binding protein 19, Rbm19
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.59  E-value=1.7e-08  Score=69.77  Aligned_cols=38  Identities=11%  Similarity=0.261  Sum_probs=35.1

Q ss_pred             CCceeeecCCCCCCCHHHHHHHhhcCCCcceeEEeecC
Q 030532          137 NDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVSFCF  174 (175)
Q Consensus       137 ndfrIFVGNLs~dVTDe~L~~aFskYGSV~~AKVV~D~  174 (175)
                      ...+||||||++++||++|+++|++||.|.+++|+.|.
T Consensus         7 ~~~~l~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~~~   44 (94)
T d2cpha1           7 TTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKM   44 (94)
T ss_dssp             CCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCC
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHHhCCceEEEEEecc
Confidence            45689999999999999999999999999999998874

>d1h2vz_ d.58.7.1 (Z:) CBP20, 20KDa nuclear cap-binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: CBP20, 20KDa nuclear cap-binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.59  E-value=2.3e-08  Score=68.87  Aligned_cols=38  Identities=13%  Similarity=0.225  Sum_probs=35.1

Q ss_pred             CCceeeecCCCCCCCHHHHHHHhhcCCCcceeEEeecC
Q 030532          137 NDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVSFCF  174 (175)
Q Consensus       137 ndfrIFVGNLs~dVTDe~L~~aFskYGSV~~AKVV~D~  174 (175)
                      ...+||||||++++|+++|+++|++||.|.+++|+.|.
T Consensus         6 ~s~tlfV~nlp~~~te~~l~~~F~~~G~i~~v~i~~~~   43 (93)
T d1h2vz_           6 KSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDK   43 (93)
T ss_dssp             TCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECT
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHHHCCcceecccccc
Confidence            34589999999999999999999999999999999875

>d2f9da1 d.58.7.1 (A:12-125) Pre-mRNA branch site protein p14 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Pre-mRNA branch site protein p14
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.59  E-value=2.3e-08  Score=70.15  Aligned_cols=37  Identities=11%  Similarity=0.257  Sum_probs=33.9

Q ss_pred             CCceeeecCCCCCCCHHHHHHHhhcCCCcceeEEeec
Q 030532          137 NDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVSFC  173 (175)
Q Consensus       137 ndfrIFVGNLs~dVTDe~L~~aFskYGSV~~AKVV~D  173 (175)
                      ...+||||||++++|+++|+++|++||.|.+++|..|
T Consensus         6 ~~r~l~V~nLp~~~te~~l~~~F~~~G~v~~i~~~~~   42 (114)
T d2f9da1           6 VNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNT   42 (114)
T ss_dssp             CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECS
T ss_pred             CCCEEEEECCCCCCCHHHHHHHHhhcCCeEeeccccc
Confidence            4457999999999999999999999999999998765

>d2ghpa1 d.58.7.1 (A:116-196) U4/U6 snRNA-associated-splicing factor PRP24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: U4/U6 snRNA-associated-splicing factor PRP24
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.58  E-value=1.9e-08  Score=66.91  Aligned_cols=36  Identities=3%  Similarity=0.039  Sum_probs=32.7

Q ss_pred             CceeeecCCCCCCCHHHHHHHhhcCCCcceeEEeec
Q 030532          138 DYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVSFC  173 (175)
Q Consensus       138 dfrIFVGNLs~dVTDe~L~~aFskYGSV~~AKVV~D  173 (175)
                      |.+||||||++++|+++|+++|++||.|...+++.|
T Consensus         1 d~tl~v~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~   36 (81)
T d2ghpa1           1 ECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPS   36 (81)
T ss_dssp             SCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC-
T ss_pred             CcEEEEECCCCcCCHHHHHHHHHHhCcEEeeeeecc
Confidence            568999999999999999999999999998888765

>d1x4ea1 d.58.7.1 (A:8-79) RNA-binding motif, single-stranded-interacting protein 2, RBMS2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding motif, single-stranded-interacting protein 2, RBMS2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.57  E-value=1.5e-08  Score=66.07  Aligned_cols=34  Identities=18%  Similarity=0.136  Sum_probs=32.4

Q ss_pred             eeecCCCCCCCHHHHHHHhhcCCCcceeEEeecC
Q 030532          141 LFCGDLGNEVNDDVLSKAFSRFPSFNMAKVSFCF  174 (175)
Q Consensus       141 IFVGNLs~dVTDe~L~~aFskYGSV~~AKVV~D~  174 (175)
                      ||||||+.++||++|+++|++||.|.++++++|.
T Consensus         1 lyV~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~   34 (72)
T d1x4ea1           1 LYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDK   34 (72)
T ss_dssp             EEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCS
T ss_pred             CEEeCCCCcCCHHHHHHHHhhhcccccccccccc
Confidence            7999999999999999999999999999998874

>d1x4ha1 d.58.7.1 (A:8-105) RNA-binding protein 28 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding protein 28
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.57  E-value=2.7e-08  Score=67.53  Aligned_cols=38  Identities=13%  Similarity=0.326  Sum_probs=34.4

Q ss_pred             CCceeeecCCCCCCCHHHHHHHhhcCCCcceeEEeecC
Q 030532          137 NDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVSFCF  174 (175)
Q Consensus       137 ndfrIFVGNLs~dVTDe~L~~aFskYGSV~~AKVV~D~  174 (175)
                      ...+||||||++++||++|+++|++||.|.+.+++.|.
T Consensus         7 ~~~tlfV~nLp~~~te~~l~~~f~~~G~v~~~~~~~~~   44 (98)
T d1x4ha1           7 EGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHP   44 (98)
T ss_dssp             CCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCS
T ss_pred             CCCEEEEcCCCCcCCHHHHHHHHhccccceeeeecccc
Confidence            45689999999999999999999999999998888764

>d1x4ga1 d.58.7.1 (A:8-103) Nucleolysin TIAR {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nucleolysin TIAR
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.57  E-value=1.8e-08  Score=70.20  Aligned_cols=38  Identities=18%  Similarity=0.449  Sum_probs=35.2

Q ss_pred             CCCceeeecCCCCCCCHHHHHHHhhcCCCcceeEEeec
Q 030532          136 ENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVSFC  173 (175)
Q Consensus       136 ~ndfrIFVGNLs~dVTDe~L~~aFskYGSV~~AKVV~D  173 (175)
                      +...+||||||+.++|+++|+++|++||.|.+++|+.|
T Consensus        16 ~~~~~l~v~nL~~~~te~~L~~~F~~fG~i~~v~i~~~   53 (96)
T d1x4ga1          16 PKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE   53 (96)
T ss_dssp             SSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT
T ss_pred             CCCCEEEEcCCCCCCCHHHHHHHHHHhCCceEEEEEec
Confidence            45678999999999999999999999999999999876

>d2cq4a1 d.58.7.1 (A:132-232) RNA binding protein 23 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA binding protein 23
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.54  E-value=2.7e-08  Score=70.14  Aligned_cols=36  Identities=17%  Similarity=0.203  Sum_probs=34.1

Q ss_pred             ceeeecCCCCCCCHHHHHHHhhcCCCcceeEEeecC
Q 030532          139 YRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVSFCF  174 (175)
Q Consensus       139 frIFVGNLs~dVTDe~L~~aFskYGSV~~AKVV~D~  174 (175)
                      .+||||||++++||++|+++|+.||.|.+++|+.|.
T Consensus        19 ~tifV~nL~~~~te~~l~~~F~~~G~V~~v~i~~d~   54 (101)
T d2cq4a1          19 RTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDR   54 (101)
T ss_dssp             TEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSC
T ss_pred             CEEEEECCCCCCCHHHHHHHHcCCCeEEEEEeeecC
Confidence            469999999999999999999999999999999874

>d2cpja1 d.58.7.1 (A:65-150) Non-POU domain-containing octamer-binding protein, NonO {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Non-POU domain-containing octamer-binding protein, NonO
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.54  E-value=3.5e-08  Score=67.24  Aligned_cols=38  Identities=18%  Similarity=0.338  Sum_probs=34.6

Q ss_pred             CCceeeecCCCCCCCHHHHHHHhhcCCCcceeEEeecC
Q 030532          137 NDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVSFCF  174 (175)
Q Consensus       137 ndfrIFVGNLs~dVTDe~L~~aFskYGSV~~AKVV~D~  174 (175)
                      ...+||||||+.++++++|+++|++||.|.+++++.|.
T Consensus         7 ~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~i~~~~~k   44 (86)
T d2cpja1           7 QRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKDK   44 (86)
T ss_dssp             CTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETTT
T ss_pred             CCCEEEEECCCCCCCHHHHHHHHHHhCCceEeeeeccc
Confidence            45679999999999999999999999999999988763

>d1x4aa1 d.58.7.1 (A:9-103) Splicing factor, arginine/serine-rich 1, SFRS1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Splicing factor, arginine/serine-rich 1, SFRS1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.54  E-value=4e-08  Score=67.60  Aligned_cols=38  Identities=16%  Similarity=0.406  Sum_probs=34.3

Q ss_pred             CCCceeeecCCCCCCCHHHHHHHhhcCCCcceeEEeec
Q 030532          136 ENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVSFC  173 (175)
Q Consensus       136 ~ndfrIFVGNLs~dVTDe~L~~aFskYGSV~~AKVV~D  173 (175)
                      .++.+||||||+.++|+++|+++|++||.|..+++..+
T Consensus        12 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~   49 (95)
T d1x4aa1          12 NNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNR   49 (95)
T ss_dssp             CCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCS
T ss_pred             CCCCEEEEECCCCCCCHHHHHHHHhcCCceEEEEeccc
Confidence            45678999999999999999999999999999887655

>d2cq0a1 d.58.7.1 (A:231-320) Eukaryotic translation initiation factor 3 subunit 4 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Eukaryotic translation initiation factor 3 subunit 4
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.54  E-value=2.6e-08  Score=67.93  Aligned_cols=38  Identities=13%  Similarity=0.168  Sum_probs=35.3

Q ss_pred             CCceeeecCCCCCCCHHHHHHHhhcCCCcceeEEeecC
Q 030532          137 NDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVSFCF  174 (175)
Q Consensus       137 ndfrIFVGNLs~dVTDe~L~~aFskYGSV~~AKVV~D~  174 (175)
                      +..+||||||+.++|+++|+++|++||.|.+++|+.|.
T Consensus         7 ~~~~i~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~d~   44 (90)
T d2cq0a1           7 DNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDK   44 (90)
T ss_dssp             SSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECS
T ss_pred             CCCEEEEECCCCCCCHHHHHHHHHHhcccccccccccc
Confidence            45689999999999999999999999999999999874

>d2b0ga1 d.58.7.1 (A:1-83) Splicesomal U1A protein {Drosophila melanogaster [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Splicesomal U1A protein
species: Drosophila melanogaster [TaxId: 7227]

Probab=98.53  E-value=3.9e-08  Score=66.12  Aligned_cols=38  Identities=29%  Similarity=0.449  Sum_probs=34.6

Q ss_pred             CCCceeeecCCCCCCCHHHHHHHhhcCCCcceeEEeec
Q 030532          136 ENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVSFC  173 (175)
Q Consensus       136 ~ndfrIFVGNLs~dVTDe~L~~aFskYGSV~~AKVV~D  173 (175)
                      +...+||||||+.++|+++|.++|++||.|.+++++.+
T Consensus         6 pP~~tl~V~nLp~~~t~~~l~~~f~~~G~i~~v~~~~~   43 (83)
T d2b0ga1           6 PPNQILFLTNLPEETNEMMLSMLFNQFPGFKEVRLVPN   43 (83)
T ss_dssp             SCCSEEEEESCCTTCCHHHHHHHHTTSTTEEEEEECTT
T ss_pred             CCCCEEEEECCCCCCCHHHHHhhhccCccEEEeeeecc
Confidence            34568999999999999999999999999999999865

>d1x5ta1 d.58.7.1 (A:8-90) Splicing factor 3B subunit 4 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Splicing factor 3B subunit 4
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.48  E-value=4.3e-08  Score=65.39  Aligned_cols=34  Identities=26%  Similarity=0.421  Sum_probs=30.7

Q ss_pred             eeecCCCCCCCHHHHHHHhhcCCCcce-eEEeecC
Q 030532          141 LFCGDLGNEVNDDVLSKAFSRFPSFNM-AKVSFCF  174 (175)
Q Consensus       141 IFVGNLs~dVTDe~L~~aFskYGSV~~-AKVV~D~  174 (175)
                      ||||||++++||++|+++|++||.|.+ .+|+.|.
T Consensus         1 lfV~nLp~~~te~~l~~~F~~~G~i~~~~~i~~~~   35 (83)
T d1x5ta1           1 IFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDP   35 (83)
T ss_dssp             EEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCT
T ss_pred             CEEcCCCCcCcHHHHHHHHHHhCceeeeEEEEeec
Confidence            799999999999999999999999976 4788774

>d1fjeb1 d.58.7.1 (B:1-91) Nucleolin {Golden hamster (Mesocricetus auratus) [TaxId: 10036]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nucleolin
species: Golden hamster (Mesocricetus auratus) [TaxId: 10036]

Probab=98.48  E-value=8e-09  Score=71.36  Aligned_cols=39  Identities=23%  Similarity=0.209  Sum_probs=35.2

Q ss_pred             CCCCceeeecCCCCCCCHHHHHHHhhcCCCcceeEEeec
Q 030532          135 PENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVSFC  173 (175)
Q Consensus       135 ~~ndfrIFVGNLs~dVTDe~L~~aFskYGSV~~AKVV~D  173 (175)
                      +...++||||||++++|+++|+++|++||.|.+++|+.+
T Consensus        10 ~~~~~~ifV~nL~~~~te~~l~~~F~~~G~i~~~~v~~~   48 (91)
T d1fjeb1          10 STTPFNLFIGNLNPNKSVAELKVAISELFAKNDLAVVDV   48 (91)
T ss_dssp             CSSSEEEEEECCCTTSCHHHHHHHHHHHHHHHTCCCCEE
T ss_pred             CCCCcEEEEeCccCcchHHHHHHHHhcCCcEEEeeeeec
Confidence            446789999999999999999999999999999888654

>d2adca1 d.58.7.1 (A:335-443) Polypyrimidine tract-binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Polypyrimidine tract-binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.47  E-value=3.7e-08  Score=68.23  Aligned_cols=36  Identities=19%  Similarity=0.227  Sum_probs=32.7

Q ss_pred             ceeeecCCCC-CCCHHHHHHHhhcCCCcceeEEeecC
Q 030532          139 YRLFCGDLGN-EVNDDVLSKAFSRFPSFNMAKVSFCF  174 (175)
Q Consensus       139 frIFVGNLs~-dVTDe~L~~aFskYGSV~~AKVV~D~  174 (175)
                      -.||||||++ .+|+++|+++|++||.|.+++|+.|.
T Consensus         3 ~~l~V~nL~p~~~te~~L~~~F~~fG~I~~v~i~~~~   39 (109)
T d2adca1           3 SVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK   39 (109)
T ss_dssp             SEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTT
T ss_pred             CEEEEeCCCcccCCHHHHHHHHhhccccceEEEEecc
Confidence            4799999966 59999999999999999999999874

>d1zh5a2 d.58.7.1 (A:105-189) Lupus LA protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Lupus LA protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.46  E-value=8.4e-08  Score=65.19  Aligned_cols=37  Identities=3%  Similarity=0.003  Sum_probs=34.3

Q ss_pred             CceeeecCCCCCCCHHHHHHHhhcCCCcceeEEeecC
Q 030532          138 DYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVSFCF  174 (175)
Q Consensus       138 dfrIFVGNLs~dVTDe~L~~aFskYGSV~~AKVV~D~  174 (175)
                      +.+||||||+.++|+++|+++|+.||.|.+++|..|.
T Consensus         6 ~rtvfV~nlp~~~te~~l~~~F~~~G~v~~v~l~~~~   42 (85)
T d1zh5a2           6 NRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTL   42 (85)
T ss_dssp             TTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECT
T ss_pred             cCEEEEECCCCCCCHHHHHHHHHHhcccccceeeeec
Confidence            4589999999999999999999999999999998764

>d1fjca_ d.58.7.1 (A:) Nucleolin {Golden hamster (Mesocricetus auratus) [TaxId: 10036]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nucleolin
species: Golden hamster (Mesocricetus auratus) [TaxId: 10036]

Probab=98.46  E-value=4.7e-08  Score=67.34  Aligned_cols=44  Identities=18%  Similarity=0.299  Sum_probs=38.3

Q ss_pred             ccCCCCCCCCCCCceeeecCCCCCCCHHHHHHHhhcCCCcceeE
Q 030532          126 WEDPTLAEWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAK  169 (175)
Q Consensus       126 WeDptL~Ew~~ndfrIFVGNLs~dVTDe~L~~aFskYGSV~~AK  169 (175)
                      -|||.......+..+||||||++++||++|+++|++||.|..++
T Consensus         4 ~e~p~~~~~~~~~~~l~V~nL~~~~te~~l~~~F~~~g~v~~~~   47 (96)
T d1fjca_           4 LEDPCTSKKVRAARTLLAKNLSFNITEDELKEVFEDALEIRLVS   47 (96)
T ss_dssp             SSCTTTTSTTTGGGEEEEESCCSSCCHHHHHHHHCSEEEECCEE
T ss_pred             cCCCCccCcCCCCCEEEEeCCCCCCCHHHHHHHHHhcccceeee
Confidence            46777777777788999999999999999999999999986654

>d2cqha1 d.58.7.1 (A:2-81) IGF-II mRNA-binding protein 2 isoform A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: IGF-II mRNA-binding protein 2 isoform A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.44  E-value=4.8e-08  Score=65.60  Aligned_cols=34  Identities=24%  Similarity=0.283  Sum_probs=31.4

Q ss_pred             eeeecCCCCCCCHHHHHHHhhcCCCcceeEEeec
Q 030532          140 RLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVSFC  173 (175)
Q Consensus       140 rIFVGNLs~dVTDe~L~~aFskYGSV~~AKVV~D  173 (175)
                      +||||||+.++||++|+++|++||.+.+.+++.+
T Consensus         3 ~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~   36 (80)
T d2cqha1           3 KLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLLK   36 (80)
T ss_dssp             CEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEEE
T ss_pred             EEEEECCCCCCCHHHHHHHHHHhCcEEEeEEecc
Confidence            7999999999999999999999999988877654

>d1wg4a_ d.58.7.1 (A:) Splicing factor, arginine/serine-rich 9 (SFRS9) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Splicing factor, arginine/serine-rich 9 (SFRS9)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.44  E-value=9.7e-08  Score=66.71  Aligned_cols=38  Identities=16%  Similarity=0.112  Sum_probs=34.8

Q ss_pred             CCCceeeecCCCCCCCHHHHHHHhhcCCCcceeEEeec
Q 030532          136 ENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVSFC  173 (175)
Q Consensus       136 ~ndfrIFVGNLs~dVTDe~L~~aFskYGSV~~AKVV~D  173 (175)
                      ..+++||||||++++++++|.++|++||.|..++|..|
T Consensus        13 ~~~~~i~V~Nlp~~~~~~~L~~~F~~~G~v~~~~i~~~   50 (98)
T d1wg4a_          13 RSDFRVLVSGLPPSGSWQDLKDHMREAGDVCYADVQKD   50 (98)
T ss_dssp             SCSCEEEEECCCSSCCHHHHHHHHTTSSCEEEEEEETT
T ss_pred             CCCCEEEEECCCCCCCHHHHHHHHHhhccccccccccc
Confidence            46778999999999999999999999999999998754

>d2ghpa2 d.58.7.1 (A:41-115) U4/U6 snRNA-associated-splicing factor PRP24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: U4/U6 snRNA-associated-splicing factor PRP24
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.43  E-value=5.5e-08  Score=64.91  Aligned_cols=35  Identities=14%  Similarity=0.177  Sum_probs=33.1

Q ss_pred             eeeecCCCCCCCHHHHHHHhhcCCCcceeEEeecC
Q 030532          140 RLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVSFCF  174 (175)
Q Consensus       140 rIFVGNLs~dVTDe~L~~aFskYGSV~~AKVV~D~  174 (175)
                      +||||||++++++++|+++|+.||.|.+++++.|.
T Consensus         2 tv~V~nlp~~~t~~~l~~~F~~~G~I~~v~~~~~~   36 (75)
T d2ghpa2           2 TVLVKNLPKSYNQNKVYKYFKHCGPIIHVDVADSL   36 (75)
T ss_dssp             EEEEEEECTTCCHHHHHHHHGGGSCEEEEEEEECT
T ss_pred             EEEEECCCCCCCHHHHHHHHhcCCceEEEEEEeec
Confidence            69999999999999999999999999999998774

>d2disa1 d.58.7.1 (A:8-103) Hypothetical protein FLJ20273 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Hypothetical protein FLJ20273
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.42  E-value=5.1e-08  Score=66.99  Aligned_cols=37  Identities=14%  Similarity=0.171  Sum_probs=33.1

Q ss_pred             CceeeecCCCCCCCHHHHHHHhhcCCC-cceeEEeecC
Q 030532          138 DYRLFCGDLGNEVNDDVLSKAFSRFPS-FNMAKVSFCF  174 (175)
Q Consensus       138 dfrIFVGNLs~dVTDe~L~~aFskYGS-V~~AKVV~D~  174 (175)
                      +.|||||||+.++|+++|+++|++||. |.+++|+.|.
T Consensus         1 n~rLyV~nLp~~~te~~l~~~f~~~g~~i~~v~~~~~~   38 (96)
T d2disa1           1 NCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASA   38 (96)
T ss_dssp             SEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSS
T ss_pred             CCEEEEcCCCCcCCHHHHHHHHHHhCCcceEEEEeeec
Confidence            358999999999999999999999995 8889888763

>d1wi8a_ d.58.7.1 (A:) Eukaryotic translation initiation factor 4B {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Eukaryotic translation initiation factor 4B
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.41  E-value=8.9e-08  Score=66.26  Aligned_cols=37  Identities=16%  Similarity=0.326  Sum_probs=33.0

Q ss_pred             CCceeeecCCCCCCCHHHHHHHhhcCCCcceeEEeecC
Q 030532          137 NDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVSFCF  174 (175)
Q Consensus       137 ndfrIFVGNLs~dVTDe~L~~aFskYGSV~~AKVV~D~  174 (175)
                      ..++||||||++++||++|+++|+.|| +.+.++++|.
T Consensus        14 p~~~v~V~nLp~~~te~~l~~~f~~~g-~~~~~~~~~~   50 (104)
T d1wi8a_          14 PPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREP   50 (104)
T ss_dssp             SCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCS
T ss_pred             CCCEEEEeCCCCcCCHHHHHHHHHHhc-cccceeeeee
Confidence            458999999999999999999999998 8888887763

>d1whya_ d.58.7.1 (A:) Putative RNA-binding protein 15B, Rbm15b {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Putative RNA-binding protein 15B, Rbm15b
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.40  E-value=1.4e-07  Score=65.19  Aligned_cols=38  Identities=26%  Similarity=0.388  Sum_probs=34.6

Q ss_pred             CCCceeeecCCCCCCCHHHHHHHhhcCCCcceeEEeec
Q 030532          136 ENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVSFC  173 (175)
Q Consensus       136 ~ndfrIFVGNLs~dVTDe~L~~aFskYGSV~~AKVV~D  173 (175)
                      ....+||||||+.++|+++|+++|++||.|..++++.|
T Consensus        15 ~Ps~tl~V~nLp~~~t~~~l~~~f~~~G~i~~~~~~~~   52 (97)
T d1whya_          15 NPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG   52 (97)
T ss_dssp             CCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS
T ss_pred             CCCCEEEEcCCCCCCCHHHHHHHHHhhcccceEeeecc
Confidence            34568999999999999999999999999999998766

>d1whxa_ d.58.7.1 (A:) Probable RNA-binding protein 19, Rbm19 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Probable RNA-binding protein 19, Rbm19
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.37  E-value=6.9e-08  Score=66.81  Aligned_cols=35  Identities=17%  Similarity=0.258  Sum_probs=31.5

Q ss_pred             CCceeeecCCCCCCCHHHHHHHhhcCCCcceeEEe
Q 030532          137 NDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVS  171 (175)
Q Consensus       137 ndfrIFVGNLs~dVTDe~L~~aFskYGSV~~AKVV  171 (175)
                      .+..||||||++++|+++|+++|++||.|..++|.
T Consensus         9 ~~~~l~V~nLp~~~t~~~L~~~F~~fG~I~~v~l~   43 (111)
T d1whxa_           9 SKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLP   43 (111)
T ss_dssp             EEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECC
T ss_pred             CCCEEEEECCCCCCCHHHHHhhhhccCCccEEEee
Confidence            45679999999999999999999999999987764

>d2ghpa3 d.58.7.1 (A:206-291) U4/U6 snRNA-associated-splicing factor PRP24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: U4/U6 snRNA-associated-splicing factor PRP24
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.37  E-value=5.9e-08  Score=65.80  Aligned_cols=36  Identities=19%  Similarity=0.361  Sum_probs=31.8

Q ss_pred             CceeeecCCCCCCCH-HHHHHHhhcCCCcceeEEeec
Q 030532          138 DYRLFCGDLGNEVND-DVLSKAFSRFPSFNMAKVSFC  173 (175)
Q Consensus       138 dfrIFVGNLs~dVTD-e~L~~aFskYGSV~~AKVV~D  173 (175)
                      ..+||||||++++|+ ++|+++|++||.|.+++|+++
T Consensus         4 ~~~l~V~nLp~~~t~ed~l~~~F~~~G~i~~v~i~~~   40 (86)
T d2ghpa3           4 GREIMIRNLSTELLDENLLRESFEGFGSIEKINIPAG   40 (86)
T ss_dssp             TTEEEEEEECTTTCCHHHHHHHHGGGSCEEEEECCSC
T ss_pred             CCEEEEECCCCCcccHHHHHHHHHhhhhccceeeecc
Confidence            458999999999875 569999999999999998765

>d2cq1a1 d.58.7.1 (A:51-138) Polypyrimidine tract-binding protein 2, PTBP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Polypyrimidine tract-binding protein 2, PTBP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.36  E-value=2e-07  Score=62.97  Aligned_cols=39  Identities=13%  Similarity=-0.057  Sum_probs=35.1

Q ss_pred             CCCCceeeecCCCCCCCHHHHHHHhhcCCCcceeEEeec
Q 030532          135 PENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVSFC  173 (175)
Q Consensus       135 ~~ndfrIFVGNLs~dVTDe~L~~aFskYGSV~~AKVV~D  173 (175)
                      .+....||||||+.++|+++|+++|++||.|.+++++.+
T Consensus         5 ~~Ps~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~~~~~   43 (88)
T d2cq1a1           5 GAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG   43 (88)
T ss_dssp             SSCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT
T ss_pred             CCCCCEEEEeCCCCCCCHHHHHHHHhccccccccccccc
Confidence            346678999999999999999999999999999998755

>d2cpia1 d.58.7.1 (A:101-189) E3 ubiquitin protein ligase CNOT4 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: E3 ubiquitin protein ligase CNOT4
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.34  E-value=5.3e-08  Score=66.70  Aligned_cols=35  Identities=14%  Similarity=0.262  Sum_probs=32.3

Q ss_pred             eeeecCCCCCCCHHHH---HHHhhcCCCcceeEEeecC
Q 030532          140 RLFCGDLGNEVNDDVL---SKAFSRFPSFNMAKVSFCF  174 (175)
Q Consensus       140 rIFVGNLs~dVTDe~L---~~aFskYGSV~~AKVV~D~  174 (175)
                      .||||||++++++++|   .++|++||.|.+++|+.|.
T Consensus        10 ~vyV~nLp~~~t~~~l~~~~e~F~~~G~I~~v~i~~~~   47 (89)
T d2cpia1          10 LVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNST   47 (89)
T ss_dssp             CEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCS
T ss_pred             EEEEECCCCccCHHHHHHHHHHhcccCCceEEEEeecc
Confidence            5999999999999999   6689999999999999875

>d2cq2a1 d.58.7.1 (A:25-125) Alkylation repair AlkB homolog 8, ALKBH8 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Alkylation repair AlkB homolog 8, ALKBH8
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.34  E-value=6.1e-08  Score=68.39  Aligned_cols=53  Identities=21%  Similarity=0.186  Sum_probs=41.2

Q ss_pred             CCccccccCCCcccCCCCCCCCCCCceeee--cCCCCCCCHHHHHHHhhcCCCcceeEEeecC
Q 030532          114 KKSIPRKAAGQTWEDPTLAEWPENDYRLFC--GDLGNEVNDDVLSKAFSRFPSFNMAKVSFCF  174 (175)
Q Consensus       114 ~k~~~R~a~G~~WeDptL~Ew~~ndfrIFV--GNLs~dVTDe~L~~aFskYGSV~~AKVV~D~  174 (175)
                      |+.++|..+-+...+|+        -+|||  |||+.++||++|+++|++||.|.+++++.|.
T Consensus         2 ~~~l~r~~~~~~~~~pt--------~~l~V~ng~L~~~vte~~L~~~F~~~G~i~~i~~~~~k   56 (101)
T d2cq2a1           2 KHTLLRHEGIETVSYAT--------QSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPPNK   56 (101)
T ss_dssp             SSSHHHHHTCCCCSSCC--------SEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCTTC
T ss_pred             CcccccccCCccCCCCC--------ceEEEECCCCCCCCCHHHHHHHHHhhCcccEEeeccCc
Confidence            35566777666665544        35666  6699999999999999999999998887653

>d1owxa_ d.58.7.1 (A:) Lupus LA protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Lupus LA protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.30  E-value=2.4e-07  Score=66.00  Aligned_cols=39  Identities=18%  Similarity=0.144  Sum_probs=34.4

Q ss_pred             CCCCceeeecCCCCCCCHHHHHHHhhcCCCcceeEEeec
Q 030532          135 PENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVSFC  173 (175)
Q Consensus       135 ~~ndfrIFVGNLs~dVTDe~L~~aFskYGSV~~AKVV~D  173 (175)
                      ...=..+|||||+.++|+++|+++|++||.|..++|+.+
T Consensus         8 ~~g~~~~fvgnL~~~~tee~Lk~~F~~fG~V~~v~i~~~   46 (113)
T d1owxa_           8 KIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRG   46 (113)
T ss_dssp             CCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTT
T ss_pred             CCCCeEEEECCCCCCCCHHHHHHHHHhcCChheEEEecC
Confidence            334556899999999999999999999999999998865

>d2cpea1 d.58.7.1 (A:353-453) RNA-binding protein EWS {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding protein EWS
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.30  E-value=2e-07  Score=63.62  Aligned_cols=33  Identities=15%  Similarity=0.224  Sum_probs=29.7

Q ss_pred             CCCCCceeeecCCCCCCCHHHHHHHhhcCCCcc
Q 030532          134 WPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFN  166 (175)
Q Consensus       134 w~~ndfrIFVGNLs~dVTDe~L~~aFskYGSV~  166 (175)
                      .+.+..+||||||++++||++|+++|+.||.|.
T Consensus         4 ~~~~~~~i~V~nLp~~~te~~l~~~F~~~G~i~   36 (101)
T d2cpea1           4 EDSDNSAIYVQGLNDSVTLDDLADFFKQCGVVK   36 (101)
T ss_dssp             CCCCCCEEEEECCCTTCCHHHHHHHHTTTSCBC
T ss_pred             CCCCCCEEEEECCCCcCCHHHHHHHHHHCceEE
Confidence            345678999999999999999999999999875

>d2adca2 d.58.7.1 (A:444-531) Polypyrimidine tract-binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Polypyrimidine tract-binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.26  E-value=4.9e-07  Score=60.87  Aligned_cols=36  Identities=17%  Similarity=0.096  Sum_probs=32.0

Q ss_pred             CceeeecCCCCCCCHHHHHHHhhcCCCcceeEEeec
Q 030532          138 DYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVSFC  173 (175)
Q Consensus       138 dfrIFVGNLs~dVTDe~L~~aFskYGSV~~AKVV~D  173 (175)
                      .-.||||||+.++|+++|+++|++||.|.+++++.+
T Consensus        10 s~tL~V~NLp~~~te~~l~~~F~~~G~v~~~~~~~~   45 (88)
T d2adca2          10 SATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQ   45 (88)
T ss_dssp             CSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEEECS
T ss_pred             CCEEEEECCCCCCCHHHHHHHhhccCCEEEEEEeee
Confidence            457999999999999999999999999988776653

>d1u1qa_ d.58.7.1 (A:) Nuclear ribonucleoprotein A1 (RNP A1, UP1) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nuclear ribonucleoprotein A1 (RNP A1, UP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.26  E-value=5.3e-07  Score=65.83  Aligned_cols=41  Identities=10%  Similarity=0.212  Sum_probs=37.0

Q ss_pred             CCCCCceeeecCCCCCCCHHHHHHHhhcCCCcceeEEeecC
Q 030532          134 WPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVSFCF  174 (175)
Q Consensus       134 w~~ndfrIFVGNLs~dVTDe~L~~aFskYGSV~~AKVV~D~  174 (175)
                      +.....+||||||++++|+++|+++|+.||.|..++|+.|.
T Consensus        93 ~~~~~~~i~V~~lp~~~te~~L~~~f~~~G~v~~~~i~~~~  133 (183)
T d1u1qa_          93 AHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDR  133 (183)
T ss_dssp             TTCCCSEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECT
T ss_pred             cccccceeEEccCCCcCCHHHHhhhhccCCceeeeeeeccc
Confidence            34466789999999999999999999999999999999875

>d1u2fa_ d.58.7.1 (A:) Splicing factor U2AF 65 KDa subunit {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Splicing factor U2AF 65 KDa subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.20  E-value=9e-08  Score=64.83  Aligned_cols=32  Identities=13%  Similarity=0.294  Sum_probs=28.9

Q ss_pred             eeeecCCCCCCCHHHHHHHhhcCCCcceeEEe
Q 030532          140 RLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVS  171 (175)
Q Consensus       140 rIFVGNLs~dVTDe~L~~aFskYGSV~~AKVV  171 (175)
                      +||||||++++||++|+++|++||.+.++.++
T Consensus         3 rlyVgNLp~~~te~~l~~~F~~~g~~~~~~~~   34 (90)
T d1u2fa_           3 RLYVGNIPFGITEEAMMDFFNAQMRLGGLTQA   34 (90)
T ss_dssp             EEEECSCCTTCCTTHHHHHHHHHHTTTTSCCS
T ss_pred             EEEEcCCCCccchHHHHHHHHhhCcEEEEEEe
Confidence            79999999999999999999999988776553

>d1wf2a_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoproteins C1/C2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Heterogeneous nuclear ribonucleoproteins C1/C2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.18  E-value=3.7e-07  Score=63.66  Aligned_cols=37  Identities=22%  Similarity=0.302  Sum_probs=31.6

Q ss_pred             CCCceeeecCCC-CCCCHHHHHHHhhcCCCcceeEEee
Q 030532          136 ENDYRLFCGDLG-NEVNDDVLSKAFSRFPSFNMAKVSF  172 (175)
Q Consensus       136 ~ndfrIFVGNLs-~dVTDe~L~~aFskYGSV~~AKVV~  172 (175)
                      ....+||||||+ ..+++++|+++|++||.|.+++|..
T Consensus        13 ~~~~~lfV~nL~~~~~~~~~L~~~F~~~G~i~~~~i~r   50 (98)
T d1wf2a_          13 SMNSRVFIGNLNTLVVKKSDVEAIFSKYGKIVGCSVHK   50 (98)
T ss_dssp             SCCCCEEEEEECTTTCCHHHHHHSSTTSSCEEEEEEET
T ss_pred             CCCcEEEEeCCCcccCCHHHHHHHHhhcCCEEEEEEeC
Confidence            345689999997 5788899999999999999988743

>d2cpxa1 d.58.7.1 (A:291-392) RNA-binding protein 41, RBM41 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding protein 41, RBM41
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.17  E-value=1.8e-07  Score=64.10  Aligned_cols=36  Identities=22%  Similarity=0.349  Sum_probs=33.2

Q ss_pred             CceeeecCCCCCCCHHHHHHHhhcCCCcceeEEeec
Q 030532          138 DYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVSFC  173 (175)
Q Consensus       138 dfrIFVGNLs~dVTDe~L~~aFskYGSV~~AKVV~D  173 (175)
                      ..+||||||+.++|+++|.++|++||.|.+++++.|
T Consensus        18 s~tl~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~   53 (102)
T d2cpxa1          18 NKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFR   53 (102)
T ss_dssp             CSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEE
T ss_pred             CCEEEEeCCCCCCCHHHHHHHHhhccceeeEEeecc
Confidence            468999999999999999999999999999888765

>d1x4fa1 d.58.7.1 (A:8-106) Matrin 3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Matrin 3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.16  E-value=7.8e-07  Score=61.91  Aligned_cols=37  Identities=8%  Similarity=0.002  Sum_probs=32.8

Q ss_pred             CCceeeecCCCCC-CCHHHHHHHhhcCCCcceeEEeec
Q 030532          137 NDYRLFCGDLGNE-VNDDVLSKAFSRFPSFNMAKVSFC  173 (175)
Q Consensus       137 ndfrIFVGNLs~d-VTDe~L~~aFskYGSV~~AKVV~D  173 (175)
                      ..-.||||||+.+ +|+++|.++|++||.|.+++++.|
T Consensus        17 ~~~~l~v~nLp~~~~te~~l~~~F~~fG~V~~v~~~~~   54 (99)
T d1x4fa1          17 LGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMRM   54 (99)
T ss_dssp             CCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEETT
T ss_pred             CCCEEEEeCCcCCccCHHHHHhhhccccceeEEEEeec
Confidence            3457999999986 899999999999999999998765

>d2bz2a1 d.58.7.1 (A:35-113) Negative elongation factor E, NELF-E {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Negative elongation factor E, NELF-E
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.15  E-value=9.8e-07  Score=58.70  Aligned_cols=35  Identities=17%  Similarity=0.160  Sum_probs=30.8

Q ss_pred             CCceeeecCCCCCCCHHHHHHHhhcCCCcceeEEeec
Q 030532          137 NDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVSFC  173 (175)
Q Consensus       137 ndfrIFVGNLs~dVTDe~L~~aFskYGSV~~AKVV~D  173 (175)
                      ..-+||||||  ++||++|+++|++||.|.++++..+
T Consensus         4 ~~~ti~V~~~--~~te~~L~~~F~~~G~I~~v~~~~~   38 (79)
T d2bz2a1           4 KGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMDPP   38 (79)
T ss_dssp             CCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEETT
T ss_pred             CCCEEEEECC--CCCHHHHHHHHhccCccceeeeccC
Confidence            4457999998  4999999999999999999998765

>d1wexa_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein L-like {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Heterogeneous nuclear ribonucleoprotein L-like
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.11  E-value=1.4e-06  Score=60.59  Aligned_cols=37  Identities=14%  Similarity=0.088  Sum_probs=33.1

Q ss_pred             CCceeeecCCCCCCCHHHHHHHhhcCCCcceeEEeec
Q 030532          137 NDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVSFC  173 (175)
Q Consensus       137 ndfrIFVGNLs~dVTDe~L~~aFskYGSV~~AKVV~D  173 (175)
                      ..-.|||+||+.++||++|.++|++||.|.+++++.+
T Consensus        14 ps~~l~v~nlp~~~te~~l~~~F~~fG~I~~~~~~~~   50 (104)
T d1wexa_          14 VSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPF   50 (104)
T ss_dssp             CCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETT
T ss_pred             CCCEEEEeCCCCCCCHHHHHHhhhhcccceEEEEEec
Confidence            3457999999999999999999999999999887654

>d2cpda1 d.58.7.1 (A:223-308) APOBEC1 stimulating protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: APOBEC1 stimulating protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.11  E-value=1.1e-06  Score=58.76  Aligned_cols=33  Identities=15%  Similarity=0.293  Sum_probs=29.6

Q ss_pred             ceeeecCCCCCCCHHHHHHHhhcCCCcceeEEe
Q 030532          139 YRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVS  171 (175)
Q Consensus       139 frIFVGNLs~dVTDe~L~~aFskYGSV~~AKVV  171 (175)
                      -+||||||+.++||++|+++|++||.|...++-
T Consensus         9 k~l~V~nLp~~~te~~l~~~F~~~g~i~~~~~~   41 (86)
T d2cpda1           9 KILYVRNLMLSTSEEMIEKEFNNIKPGAVERVK   41 (86)
T ss_dssp             CEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEE
T ss_pred             CEEEEcCCCCCCCHHHHHHhhcccceeeeEEEc
Confidence            469999999999999999999999998776653

>d1wg5a_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein H' {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Heterogeneous nuclear ribonucleoprotein H'
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.11  E-value=1.4e-06  Score=60.53  Aligned_cols=39  Identities=13%  Similarity=-0.020  Sum_probs=33.4

Q ss_pred             CCCCceeeecCCCCCCCHHHHHHHhhcCCCcceeEEeec
Q 030532          135 PENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVSFC  173 (175)
Q Consensus       135 ~~ndfrIFVGNLs~dVTDe~L~~aFskYGSV~~AKVV~D  173 (175)
                      +.++..|||+||++++||++|+++|+.||.+....++++
T Consensus        12 ~~~~~~v~v~nLP~~~te~dI~~~F~~~g~v~~~v~~~~   50 (104)
T d1wg5a_          12 TANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPV   50 (104)
T ss_dssp             CSCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCB
T ss_pred             CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCceEEEEEEe
Confidence            346667999999999999999999999999887666554

>d1weza_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein H' {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Heterogeneous nuclear ribonucleoprotein H'
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.10  E-value=1.3e-06  Score=60.63  Aligned_cols=38  Identities=8%  Similarity=0.005  Sum_probs=33.1

Q ss_pred             CCCceeeecCCCCCCCHHHHHHHhhcCCCcceeEEeecC
Q 030532          136 ENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVSFCF  174 (175)
Q Consensus       136 ~ndfrIFVGNLs~dVTDe~L~~aFskYGSV~~AKVV~D~  174 (175)
                      ...+.|||+||++++|+++|+++|+.|| +..+++++|.
T Consensus        13 ~~~~~v~v~nLp~~~te~dl~~~F~~~~-~~~v~~~~~~   50 (102)
T d1weza_          13 TTGHCVHMRGLPYRATENDIYNFFSPLN-PMRVHIEIGP   50 (102)
T ss_dssp             SSSCEEEEESCCTTCCHHHHHHSSCSCC-CSEEEEEESS
T ss_pred             CCCCEEEEeCCCCcCCHHHHHHHHhccC-cceeeeEEec
Confidence            4557899999999999999999999997 5678888775

>d2cpya1 d.58.7.1 (A:536-638) RNA-binding protein 12 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding protein 12
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.10  E-value=1.3e-06  Score=60.20  Aligned_cols=37  Identities=5%  Similarity=-0.078  Sum_probs=31.8

Q ss_pred             CCCCceeeecCCCCCCCHHHHHHHhhcCCCcceeEEe
Q 030532          135 PENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVS  171 (175)
Q Consensus       135 ~~ndfrIFVGNLs~dVTDe~L~~aFskYGSV~~AKVV  171 (175)
                      +....+||||||++++|+++|+++|+.||.+....++
T Consensus         5 ~~~~~~v~v~nLp~~~t~~~l~~~F~~~g~i~~~~~~   41 (103)
T d2cpya1           5 NSAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHV   41 (103)
T ss_dssp             CSCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEE
T ss_pred             CCCceEEEEeCCCCCCCHHHHhhhhcccceEEEEEEE
Confidence            4556789999999999999999999999998875443

>d1wg1a_ d.58.7.1 (A:) Probable RNA-binding protein KIAA1579 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Probable RNA-binding protein KIAA1579
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.08  E-value=1.5e-06  Score=59.20  Aligned_cols=28  Identities=7%  Similarity=0.188  Sum_probs=25.9

Q ss_pred             CCCceeeecCCCCCCCHHHHHHHhhcCC
Q 030532          136 ENDYRLFCGDLGNEVNDDVLSKAFSRFP  163 (175)
Q Consensus       136 ~ndfrIFVGNLs~dVTDe~L~~aFskYG  163 (175)
                      +...+||||||++++++++|+++|++||
T Consensus         3 s~s~~i~V~nLp~~~t~~~l~~lF~~~G   30 (88)
T d1wg1a_           3 SGSSGILVKNLPQDSNCQEVHDLLKDYD   30 (88)
T ss_dssp             CCCCCEEEESCCSSCCHHHHHHHTCSSC
T ss_pred             CCCCEEEEeCCCCccChHHHHHHHHhcC
Confidence            3556899999999999999999999999

>d1wi6a1 d.58.7.1 (A:69-143) Ribonucleoprotein PTB-binding 1, Raver-1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Ribonucleoprotein PTB-binding 1, Raver-1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.98  E-value=2.5e-06  Score=56.56  Aligned_cols=28  Identities=11%  Similarity=0.271  Sum_probs=24.8

Q ss_pred             eeecCCCCCCCHHHHHHHhhcCCCcceeE
Q 030532          141 LFCGDLGNEVNDDVLSKAFSRFPSFNMAK  169 (175)
Q Consensus       141 IFVGNLs~dVTDe~L~~aFskYGSV~~AK  169 (175)
                      ||||||++++++++|+++|++|| +...+
T Consensus         1 i~V~nLp~~~t~~~l~~~F~~~g-~~~~~   28 (75)
T d1wi6a1           1 ILIRGLPGDVTNQEVHDLLSDYE-LKYCF   28 (75)
T ss_dssp             EEEECCCTTCCHHHHHHHTTTSC-EEEEE
T ss_pred             CEEeCCCCcCCHHHHHHHHhccc-cccee
Confidence            79999999999999999999999 44444

>d2cqpa1 d.58.7.1 (A:917-1002) RNA-binding protein 12 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding protein 12
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.97  E-value=2.4e-06  Score=56.97  Aligned_cols=38  Identities=8%  Similarity=0.037  Sum_probs=32.0

Q ss_pred             CCCceeeecCCCCCCCHHHHHHHhhcCCCccee-EEeec
Q 030532          136 ENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMA-KVSFC  173 (175)
Q Consensus       136 ~ndfrIFVGNLs~dVTDe~L~~aFskYGSV~~A-KVV~D  173 (175)
                      +..+.|||+||++++++++|+++|+.||.+.+. ++..|
T Consensus         7 p~~~~l~v~nLp~~~~~~di~~~F~~~~~~~~~~~~~~~   45 (86)
T d2cqpa1           7 PGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYN   45 (86)
T ss_dssp             CSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEEC
T ss_pred             CCCCEEEEECCCCCCCHHHHHHHHhhcccceeEEEEEeC
Confidence            456789999999999999999999999999774 44443

>d1nu4a_ d.58.7.1 (A:) Splicesomal U1A protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Splicesomal U1A protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.95  E-value=3.2e-06  Score=57.36  Aligned_cols=34  Identities=29%  Similarity=0.458  Sum_probs=29.0

Q ss_pred             CceeeecCCCCCCCHHHHHH----HhhcCCCcceeEEe
Q 030532          138 DYRLFCGDLGNEVNDDVLSK----AFSRFPSFNMAKVS  171 (175)
Q Consensus       138 dfrIFVGNLs~dVTDe~L~~----aFskYGSV~~AKVV  171 (175)
                      .-+||||||++++|+++|++    +|++||.|.++++.
T Consensus         3 ~~tl~V~nLp~~~t~~dl~~~l~~~f~~~G~i~~i~~~   40 (91)
T d1nu4a_           3 NHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVS   40 (91)
T ss_dssp             CSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECC
T ss_pred             CCEEEEeCCCCCCCHHHHHHHHHHHhcccccccceEEe
Confidence            45899999999999988864    58999999987764

>d1x4da1 d.58.7.1 (A:8-96) Matrin 3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Matrin 3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.92  E-value=1.8e-06  Score=59.10  Aligned_cols=37  Identities=8%  Similarity=-0.116  Sum_probs=32.5

Q ss_pred             CCceeeecCCCCC-CCHHHHHHHhhcCCCcceeEEeec
Q 030532          137 NDYRLFCGDLGNE-VNDDVLSKAFSRFPSFNMAKVSFC  173 (175)
Q Consensus       137 ndfrIFVGNLs~d-VTDe~L~~aFskYGSV~~AKVV~D  173 (175)
                      ..-.||||||+.. +|+++|.++|+.||.|.+++++.|
T Consensus         7 ~sr~v~v~nl~~~~~t~~eL~~lF~~fG~I~~i~i~~~   44 (89)
T d1x4da1           7 TRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNK   44 (89)
T ss_dssp             CCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSS
T ss_pred             CCcEEEEECCCCCcCCHHHHHHHHHhhCCeEEEEeecc
Confidence            3445999999986 889999999999999999998765

>d1wela1 d.58.7.1 (A:412-523) RNA-binding protein 12 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding protein 12
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.91  E-value=2.7e-06  Score=60.02  Aligned_cols=37  Identities=8%  Similarity=0.097  Sum_probs=31.8

Q ss_pred             CCceeeecCCCCCCCHHHHHHHhhcCCCcceeEEeec
Q 030532          137 NDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVSFC  173 (175)
Q Consensus       137 ndfrIFVGNLs~dVTDe~L~~aFskYGSV~~AKVV~D  173 (175)
                      ..+.||||||++++|+++|.++|+.||.+..+.++.+
T Consensus        17 ~~~~i~v~nLp~~~t~~di~~~F~~~g~~~~~~~~~~   53 (112)
T d1wela1          17 AGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAY   53 (112)
T ss_dssp             CCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEE
T ss_pred             CCeEEEEecCCCcCcHHHHhhHHhhccccccceeeec
Confidence            4668999999999999999999999999877655543

>d1weya_ d.58.7.1 (A:) Calcipressin-1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Calcipressin-1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.69  E-value=7.6e-06  Score=57.71  Aligned_cols=38  Identities=8%  Similarity=0.015  Sum_probs=32.1

Q ss_pred             CCCceeeecCCCCCCCH-----HHHHHHhhcCCCcceeEEeec
Q 030532          136 ENDYRLFCGDLGNEVND-----DVLSKAFSRFPSFNMAKVSFC  173 (175)
Q Consensus       136 ~ndfrIFVGNLs~dVTD-----e~L~~aFskYGSV~~AKVV~D  173 (175)
                      +...+||||||..+|.+     ++|+++|++||.|.++++..+
T Consensus         3 ~~~~~L~v~nl~~~v~~~d~~k~~l~~lF~~~G~i~~~~~~k~   45 (104)
T d1weya_           3 SGSSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKS   45 (104)
T ss_dssp             SCCCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETT
T ss_pred             CCCceEEEEeCCchhcCcHHHHHHHHHHhcccccceEEEEecC
Confidence            46778999999999843     569999999999999988654

>d1wwha1 d.58.7.1 (A:169-249) Nucleoporin 35 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nucleoporin 35
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.08  E-value=0.00012  Score=49.68  Aligned_cols=36  Identities=11%  Similarity=0.081  Sum_probs=30.1

Q ss_pred             CCceeeecCCCCCCCHHHHHHHhhcCCCcceeEEeec
Q 030532          137 NDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVSFC  173 (175)
Q Consensus       137 ndfrIFVGNLs~dVTDe~L~~aFskYGSV~~AKVV~D  173 (175)
                      ++..|||++|+++.+|+.|+ .|++||.|.+.++..+
T Consensus         3 ~~~wV~V~G~p~~~~~~il~-~F~~~G~I~~~~~~~~   38 (81)
T d1wwha1           3 DDTWVTVFGFPQASASYILL-QFAQYGNILKHVMSNT   38 (81)
T ss_dssp             GGGEEEEECCCGGGHHHHHH-HHHTTSCEEEEEECSS
T ss_pred             cccEEEEECCChHHHHHHHH-HHHhhhhhheEEecCC
Confidence            35569999999999988775 6999999999887543

>d1jmta_ d.58.7.3 (A:) U2AF35 (35 KDa subunit) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Splicing factor U2AF subunits
domain: U2AF35 (35 KDa subunit)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.68  E-value=4.4e-05  Score=53.68  Aligned_cols=35  Identities=9%  Similarity=0.089  Sum_probs=32.2

Q ss_pred             eeeecCCCCCCCHHHHHHHhhcCCCcceeEEeecC
Q 030532          140 RLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVSFCF  174 (175)
Q Consensus       140 rIFVGNLs~dVTDe~L~~aFskYGSV~~AKVV~D~  174 (175)
                      +++|+++..+++||+|+++|++||.|.+++|+.|.
T Consensus        29 ~~~v~~~~~~~~ed~l~e~f~k~G~I~~v~I~~~~   63 (104)
T d1jmta_          29 DVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNL   63 (104)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSS
T ss_pred             hHHhhhhhhhhhHHHHHHHhccCCCEEEEEeecCC
Confidence            58899999999999999999999999999998765

>d1o0pa_ d.58.7.1 (A:) Splicing factor U2AF 65 KDa subunit {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Splicing factor U2AF 65 KDa subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.51  E-value=0.046  Score=37.23  Aligned_cols=35  Identities=9%  Similarity=0.046  Sum_probs=25.6

Q ss_pred             eeeecCC--CCCCC--------HHHHHHHhhcCCCcceeEEeecC
Q 030532          140 RLFCGDL--GNEVN--------DDVLSKAFSRFPSFNMAKVSFCF  174 (175)
Q Consensus       140 rIFVGNL--s~dVT--------De~L~~aFskYGSV~~AKVV~D~  174 (175)
                      -|.+.||  ..++.        .++|++.|++||.|.+++|..+.
T Consensus         6 vl~l~N~~~~~~l~~~~~~~~i~edi~~e~~k~G~v~~v~I~~~~   50 (104)
T d1o0pa_           6 VLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPV   50 (104)
T ss_dssp             EEEEESSCCTTTTTSHHHHHHHHHHHHHHHTTTSCEEEEECCCCT
T ss_pred             EEEEeCCCCHHHcCCchhHHHHHHHHHHHhcccCceEEEEEeecC
Confidence            3667777  33332        25789999999999999987653

>d2dita1 d.58.7.1 (A:8-106) HIV Tat-specific factor 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: HIV Tat-specific factor 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.62  E-value=0.17  Score=34.08  Aligned_cols=36  Identities=8%  Similarity=0.045  Sum_probs=26.9

Q ss_pred             CceeeecCC--CCCCC---------HHHHHHHhhcCCCcceeEEeec
Q 030532          138 DYRLFCGDL--GNEVN---------DDVLSKAFSRFPSFNMAKVSFC  173 (175)
Q Consensus       138 dfrIFVGNL--s~dVT---------De~L~~aFskYGSV~~AKVV~D  173 (175)
                      +-.|++.||  +.++.         .++|++.|++||.|.+++|..+
T Consensus         8 ~r~v~l~nmf~~~~~~~~~~~~~~i~edv~~~~~~~G~V~~v~~~~~   54 (99)
T d2dita1           8 ERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLLFDR   54 (99)
T ss_dssp             CCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEEETT
T ss_pred             ccEEEEccCCCHHHhhcchHHHHHHHHHHHHHhcCcccEEEEeccCC
Confidence            335888888  33321         2688999999999999988765