Citrus Sinensis ID: 030533

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-----
Protein Sequence
MAFSAVTARCPSLLRLPNGHTPSISVNQNSVSFRFSKLNLSRRYSVSVRSSSTSAVAPATEDLKPAILLTEKALKHLSKMRSERSEDLCLRIGVKQGGCSGMSYTMEFENRANARPDDSVIEYDGFVIVCDPKSLLFLFGMQLDYSDALIGGGFSFKNPNATQTCGCGKSFAAEM
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccccccccccccccEEccccccccccccccccccEEEcHHHHHHHHHHHHHcccccEEEEEEEcccccccccccEEEcccccccccEEEEEccEEEEEcccccccccccEEEEEccccccccEEccccccccccccccEEEEc
Secondary Structure Prediction (SSPRO)
ccEEEEcccccccccccccccccccccccccEEEcccccccccccEEEEccccHHHccccccccccccccHHHHHHHHHHHHHcccccEEEEEEEcccccccEEEEEEEcccccccccEEEEcccEEEEEccccHHEEccEEEEcHHHHccccEEEEcccccccccccccEEEcc
Coil and Loop (DISEMBL)
mafsavtarcpsllrlpnghtpsisvnqnsvsFRFSklnlsrrysvsvrssstsavapatedlkpAILLTEKALKHLSKMRSERSEDLCLRIgvkqggcsgmsYTMEFenranarpddsvieydgfvivcdpksLLFLFGMqldysdaligggfsfknpnatqtcgcgksfaaem
Flexible Loop (DISEMBL)
MAFSAVtarcpsllrlpnghtpsisvnqnsvSFRFSKLNLSRRYSvsvrssstsavapatedlkpaILLTEKALKHLSKMrsersedlcLRIGVKQGGCSGMSYTMEFENRANARPDDSVIEYDGFVIVCDPKSLLFLFGMQLDYSDALIGGGFSFKNPNATQTCGCGKSFAAEM
Low Complexity Region (SEG)
MAFSAVTARCPSLLRLPNGHTPSISVNQNSVSFRFSKLNLsrrysvsvrssstsavapaTEDLKPAILLTEKALKHLSKMRSERSEDLCLRIGVKQGGCSGMSYTMEFENRANARPDDSVIEYDGFVIVCDPKSLLFLFGMQLDYSDALIGGGFSFKNPNATQTCGCGKSFAAEM
Disordered region (IsUnstruct)
******************************************************************ILL*****************DLCLRIGVKQGGCSGMSYTMEFENR****PDDSVIEYDGFVIVCDPKSLLFLFGMQLDYSDALIGGGFSFKNPNATQTCGC********
Disordered Region (DISOPRED)
*******************************************************************LLTEKALKHLSK*****SEDLCLRIGVKQGGCSGMSYTMEFENRANARPDDSVIEYDGFVIVCDPKSLLFLFGMQLDYSDALIGGGFSFKNPNATQTCGCGKSFAAE*
Disordered Region (DISEMBL)
********RCPSLLRLPNGHTPSISVNQNSVSFRFSKLNLS****************PATEDLKPAILLTEKALKH*********EDLCLRIGVKQGGCSGMSYTMEFENRANARPDDSVIEYDGFVIVCDPKSLLFLFGMQLDYSDALIGGGFSFKNPNATQTCGCGKSFAAEM
Disordered Region (DISPRO)
**FSAVTARCPSLLRLP**************SFRFSKLNLSRRYSVSVRSSS*************AILLTEKALKHLSKMRSERSEDLCLRIGVKQGGCSGMSYTMEFENRANARPDDSVIEYDGFVIVCDPKSLLFLFGMQLDYSDALIGGGFSFKNPNATQTCGCGKSFA***
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MAFSAVTARCPSLLRLPNGHTPSISVNQNSVSFRFSKLNLSRRYSVSVRSSSTSAVAPATEDLKPAILLTEKALKHLSKMRSERSEDLCLRIGVKQGGCSGMSYTMEFENRANARPDDSVIEYDGFVIVCDPKSLLFLFGMQLDYSDALIGGGFSFKNPNATQTCGCGKSFAAEM
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	175	2.2.26 [Sep-21-2011]
Q9XIK3	180	Iron-sulfur assembly prot	yes	no	0.994	0.966	0.729	2e-62
P72731	118	Uncharacterized protein s	N/A	no	0.668	0.991	0.581	6e-37
Q9MSA1	112	Uncharacterized protein y	N/A	no	0.605	0.946	0.570	3e-31
P51217	114	Uncharacterized protein y	N/A	no	0.611	0.938	0.588	3e-28
Q1XDR9	114	Uncharacterized protein y	N/A	no	0.611	0.938	0.551	6e-26
B0U4D9	128	Iron--sulfur cluster inse	yes	no	0.605	0.828	0.454	6e-21
Q1GXC7	117	Putative iron-sulfur clus	yes	no	0.645	0.965	0.422	7e-21
P64343	128	Iron-sulfur cluster inser	yes	no	0.605	0.828	0.436	5e-20
P64342	128	Iron-sulfur cluster inser	yes	no	0.605	0.828	0.436	5e-20
B2I891	128	Iron--sulfur cluster inse	yes	no	0.605	0.828	0.436	5e-20

>sp|Q9XIK3|ISCAP_ARATH Iron-sulfur assembly protein IscA, chloroplastic OS=Arabidopsis thaliana GN=ISCA PE=2 SV=2

 Score =  237 bits (605), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 132/181 (72%), Positives = 145/181 (80%), Gaps = 7/181 (3%)

Query: 1   MAFSA--VTARCPSLLRLPNGHTPSISV-NQNSVSF---RFSKLNLSRRYSVSVRSSSTS 54
           MAF+    T+  P+ L L   +T   SV + NS+SF    +  LNL+RR  +SVRS+S  
Sbjct: 1   MAFATGITTSSNPTFLGLKISNTSLRSVVSCNSISFPSLSYVNLNLNRRNRLSVRSASVP 60

Query: 55  AVAPATEDLKPAILLTEKALKHLSKMRSERSEDLCLRIGVKQGGCSGMSYTMEFENRANA 114
           A APA E LKPAI L+E ALKHLSKMRSER EDLCLRIGVKQGGCSGMSYTM+FENRANA
Sbjct: 61  A-APAMEGLKPAISLSENALKHLSKMRSERGEDLCLRIGVKQGGCSGMSYTMDFENRANA 119

Query: 115 RPDDSVIEYDGFVIVCDPKSLLFLFGMQLDYSDALIGGGFSFKNPNATQTCGCGKSFAAE 174
           RPDDS IEY GF IVCDPKS+LFLFGMQLDYSDALIGGGFSF NPNATQTCGCGKSFAAE
Sbjct: 120 RPDDSTIEYQGFTIVCDPKSMLFLFGMQLDYSDALIGGGFSFSNPNATQTCGCGKSFAAE 179

Query: 175 M 175
           M
Sbjct: 180 M 180

Involved in the assembly of chloroplastic iron-sulfur proteins. Is able to transfer iron-sulfur clusters to apo-ferredoxin.
Arabidopsis thaliana (taxid: 3702)

>sp|P72731|Y1417_SYNY3 Uncharacterized protein slr1417 OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=slr1417 PE=3 SV=1

 Score =  153 bits (386), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 68/117 (58%), Positives = 87/117 (74%)

Query: 56  VAPATEDLKPAILLTEKALKHLSKMRSERSEDLCLRIGVKQGGCSGMSYTMEFENRANAR 115
           ++ AT      I L++ ALKHL  ++ ++ +DLCLR+GV+QGGCSGMSY M+FE    A 
Sbjct: 1   MSQATATQAKGIQLSDAALKHLLALKEQQGKDLCLRVGVRQGGCSGMSYMMDFEEPNRAT 60

Query: 116 PDDSVIEYDGFVIVCDPKSLLFLFGMQLDYSDALIGGGFSFKNPNATQTCGCGKSFA 172
             D V +Y+GF I+CD KSLL+L+G+ LDYS+ALIGGGF F NPNA QTCGCGKSF 
Sbjct: 61  EHDEVFDYEGFQIICDRKSLLYLYGLMLDYSNALIGGGFQFTNPNANQTCGCGKSFG 117

Synechocystis sp. (strain PCC 6803 / Kazusa) (taxid: 1111708)

>sp|Q9MSA1|YCF83_GALSU Uncharacterized protein ycf83 OS=Galdieria sulphuraria GN=ycf83 PE=3 SV=1

 Score =  134 bits (337), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 61/107 (57%), Positives = 80/107 (74%), Gaps = 1/107 (0%)

Query: 67  ILLTEKALKHLSKMRSERSED-LCLRIGVKQGGCSGMSYTMEFENRANARPDDSVIEYDG 125
           I +T+ AL HL+ +    SED L +RIG+KQGGCSG+SY M +E ++N   +D V +YD 
Sbjct: 6   INITKSALDHLNSISKLNSEDKLYIRIGIKQGGCSGLSYFMTYEKKSNISDNDLVYDYDN 65

Query: 126 FVIVCDPKSLLFLFGMQLDYSDALIGGGFSFKNPNATQTCGCGKSFA 172
           F +VCD KS+L+L+G+ LDYS +LI GGF F NPNA QTCGCGKSF+
Sbjct: 66  FTLVCDNKSILYLYGISLDYSSSLIDGGFKFLNPNAKQTCGCGKSFS 112

Galdieria sulphuraria (taxid: 130081)

>sp|P51217|YCF83_PORPU Uncharacterized protein ycf83 OS=Porphyra purpurea GN=ycf83 PE=3 SV=1

 Score =  124 bits (311), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 63/107 (58%), Positives = 81/107 (75%)

Query: 67  ILLTEKALKHLSKMRSERSEDLCLRIGVKQGGCSGMSYTMEFENRANARPDDSVIEYDGF 126
           I LTE A + +  ++S    ++CLRIGVKQGGCSGMSY+M FE+ ++ R  D V+  D F
Sbjct: 8   ITLTEPAARQIKILKSNFDNEVCLRIGVKQGGCSGMSYSMNFESVSSLRETDEVLMLDSF 67

Query: 127 VIVCDPKSLLFLFGMQLDYSDALIGGGFSFKNPNATQTCGCGKSFAA 173
           ++ CDPKSLL+L+G+ LDYS  LIGGGF F NPNA+QTCGCGKSF+ 
Sbjct: 68  LVACDPKSLLYLYGLSLDYSSELIGGGFQFSNPNASQTCGCGKSFSG 114

Porphyra purpurea (taxid: 2787)

>sp|Q1XDR9|YCF83_PORYE Uncharacterized protein ycf83 OS=Porphyra yezoensis GN=ycf83 PE=3 SV=1

 Score =  116 bits (291), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 59/107 (55%), Positives = 80/107 (74%)

Query: 67  ILLTEKALKHLSKMRSERSEDLCLRIGVKQGGCSGMSYTMEFENRANARPDDSVIEYDGF 126
           I +T+ ALK ++ ++++   D+ LRIGV+QGGCSGMSY+M FE+    +  D  +  D F
Sbjct: 8   ITITKPALKQIAILKNDHENDVHLRIGVRQGGCSGMSYSMNFEHVDKLKDTDERLRLDNF 67

Query: 127 VIVCDPKSLLFLFGMQLDYSDALIGGGFSFKNPNATQTCGCGKSFAA 173
            +VCDPKSLL+L+G+ LD+S  LIGGGF F NPNA+QTCGCGKSF+ 
Sbjct: 68  SVVCDPKSLLYLYGLSLDFSSELIGGGFQFSNPNASQTCGCGKSFSG 114

Porphyra yezoensis (taxid: 2788)

>sp|B0U4D9|ERPA_XYLFM Iron--sulfur cluster insertion protein ErpA OS=Xylella fastidiosa (strain M12) GN=erpA PE=3 SV=1

 Score =  100 bits (248), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 50/110 (45%), Positives = 68/110 (61%), Gaps = 4/110 (3%)

Query: 64  KPAILLTEKALKHLSKMRSERSEDLCLRIGVKQGGCSGMSYTMEF-ENRANARPDDSVIE 122
           +P       A K    ++ E S DL LR+ ++ GGCSG  Y  EF ENRA+   DD V+E
Sbjct: 21  RPLNFTMAAAAKVRELIQEENSADLALRVYIQGGGCSGFQYGFEFDENRAD---DDLVLE 77

Query: 123 YDGFVIVCDPKSLLFLFGMQLDYSDALIGGGFSFKNPNATQTCGCGKSFA 172
            DG V++ DP SL +L G ++DY+++L G  F  +NPNA  TCGCG SF+
Sbjct: 78  TDGVVLLVDPLSLQYLLGAEVDYTESLTGAKFVIRNPNAKTTCGCGSSFS 127

Required for insertion of 4Fe-4S clusters for at least IspG.

Xylella fastidiosa (strain M12) (taxid: 405440)

>sp|Q1GXC7|ERPA_METFK Putative iron-sulfur cluster insertion protein ErpA OS=Methylobacillus flagellatus (strain KT / ATCC 51484 / DSM 6875) GN=erpA PE=3 SV=1

 Score = 99.8 bits (247), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 49/116 (42%), Positives = 70/116 (60%), Gaps = 3/116 (2%)

Query: 59  ATEDLKPAILLTEKALKHLSKMRSER-SEDLCLRIGVKQGGCSGMSYTMEFENRANARPD 117
            TE++   ++ T+ A + + ++  E  S DL LR+ V  GGCSG  Y   FE   N   D
Sbjct: 4   VTEEIPSPLIFTDNAARKVKELIDEEGSPDLKLRVFVSGGGCSGFQYGFTFEETINE--D 61

Query: 118 DSVIEYDGFVIVCDPKSLLFLFGMQLDYSDALIGGGFSFKNPNATQTCGCGKSFAA 173
           D+ ++ DG  ++ DP SL +L G ++DY D+L G  F  +NPNAT TCGCG SF+A
Sbjct: 62  DTTVDKDGVTLLIDPMSLQYLVGAEIDYQDSLQGSQFVIRNPNATTTCGCGSSFSA 117

Required for insertion of 4Fe-4S clusters.

Methylobacillus flagellatus (strain KT / ATCC 51484 / DSM 6875) (taxid: 265072)

>sp|P64343|ERPA_XYLFT Iron-sulfur cluster insertion protein ErpA OS=Xylella fastidiosa (strain Temecula1 / ATCC 700964) GN=erpA PE=3 SV=1

 Score = 97.1 bits (240), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 48/110 (43%), Positives = 67/110 (60%), Gaps = 4/110 (3%)

Query: 64  KPAILLTEKALKHLSKMRSERSEDLCLRIGVKQGGCSGMSYTMEF-ENRANARPDDSVIE 122
           +P       A K    ++ E + DL LR+ ++ GGCSG  Y  EF ENRA+   DD  +E
Sbjct: 21  RPLNFTMAAAAKVRELIQEENNADLALRVYIQGGGCSGFQYGFEFDENRAD---DDLALE 77

Query: 123 YDGFVIVCDPKSLLFLFGMQLDYSDALIGGGFSFKNPNATQTCGCGKSFA 172
            DG V++ DP SL +L G ++DY+++L G  F  +NPNA  TCGCG SF+
Sbjct: 78  TDGVVLLVDPLSLQYLLGAEVDYTESLTGAKFVIRNPNAKTTCGCGSSFS 127

Required for insertion of 4Fe-4S clusters for at least IspG.

Xylella fastidiosa (strain Temecula1 / ATCC 700964) (taxid: 183190)

>sp|P64342|ERPA_XYLFA Iron-sulfur cluster insertion protein ErpA OS=Xylella fastidiosa (strain 9a5c) GN=erpA PE=3 SV=1

 Score = 97.1 bits (240), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 48/110 (43%), Positives = 67/110 (60%), Gaps = 4/110 (3%)

Query: 64  KPAILLTEKALKHLSKMRSERSEDLCLRIGVKQGGCSGMSYTMEF-ENRANARPDDSVIE 122
           +P       A K    ++ E + DL LR+ ++ GGCSG  Y  EF ENRA+   DD  +E
Sbjct: 21  RPLNFTMAAAAKVRELIQEENNADLALRVYIQGGGCSGFQYGFEFDENRAD---DDLALE 77

Query: 123 YDGFVIVCDPKSLLFLFGMQLDYSDALIGGGFSFKNPNATQTCGCGKSFA 172
            DG V++ DP SL +L G ++DY+++L G  F  +NPNA  TCGCG SF+
Sbjct: 78  TDGVVLLVDPLSLQYLLGAEVDYTESLTGAKFVIRNPNAKTTCGCGSSFS 127

Required for insertion of 4Fe-4S clusters for at least IspG.

Xylella fastidiosa (taxid: 2371)

>sp|B2I891|ERPA_XYLF2 Iron--sulfur cluster insertion protein ErpA OS=Xylella fastidiosa (strain M23) GN=erpA PE=3 SV=1

 Score = 97.1 bits (240), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 48/110 (43%), Positives = 67/110 (60%), Gaps = 4/110 (3%)

Query: 64  KPAILLTEKALKHLSKMRSERSEDLCLRIGVKQGGCSGMSYTMEF-ENRANARPDDSVIE 122
           +P       A K    ++ E + DL LR+ ++ GGCSG  Y  EF ENRA+   DD  +E
Sbjct: 21  RPLNFTMAAAAKVRELIQEENNADLALRVYIQGGGCSGFQYGFEFDENRAD---DDLALE 77

Query: 123 YDGFVIVCDPKSLLFLFGMQLDYSDALIGGGFSFKNPNATQTCGCGKSFA 172
            DG V++ DP SL +L G ++DY+++L G  F  +NPNA  TCGCG SF+
Sbjct: 78  TDGVVLLVDPLSLQYLLGAEVDYTESLTGAKFVIRNPNAKTTCGCGSSFS 127

Required for insertion of 4Fe-4S clusters for at least IspG.

Xylella fastidiosa (strain M23) (taxid: 405441)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	175
449448422	174	PREDICTED: iron-sulfur assembly protein	0.982	0.988	0.734	7e-68
312282967	177	unnamed protein product [Thellungiella h	0.994	0.983	0.745	2e-65
255582815	178	Iron-sulfur assembly protein IscA, chlor	0.994	0.977	0.737	3e-63
255626663	165	unknown [Glycine max]	0.937	0.993	0.710	7e-63
356512760	169	PREDICTED: iron-sulfur assembly protein	0.96	0.994	0.698	1e-61
118489850	179	unknown [Populus trichocarpa x Populus d	0.977	0.955	0.704	1e-61
118487106	179	unknown [Populus trichocarpa]	0.977	0.955	0.704	1e-61
388494022	169	unknown [Lotus japonicus]	0.96	0.994	0.670	2e-61
225438531	173	PREDICTED: iron-sulfur assembly protein	0.982	0.994	0.715	2e-61
388501986	169	unknown [Lotus japonicus]	0.96	0.994	0.670	3e-61

>gi|449448422|ref|XP_004141965.1| PREDICTED: iron-sulfur assembly protein IscA, chloroplastic-like [Cucumis sativus] gi|449515823|ref|XP_004164947.1| PREDICTED: iron-sulfur assembly protein IscA, chloroplastic-like [Cucumis sativus]

 Score =  261 bits (667), Expect = 7e-68,   Method: Compositional matrix adjust.
 Identities = 130/177 (73%), Positives = 147/177 (83%), Gaps = 5/177 (2%)

Query: 1   MAFSAVTARCP--SLLRLPNGHTPSISVNQNSVSFRFSKLNLSRRYSVSVRSSSTSAVAP 58
           MAFS+++ +CP   +L LP    P     Q S+SFRF     SRR S+S+RS S  A AP
Sbjct: 1   MAFSSISMKCPCPPVLHLP--ALPKSYAPQTSISFRFPSTKFSRRKSLSIRSVSVPA-AP 57

Query: 59  ATEDLKPAILLTEKALKHLSKMRSERSEDLCLRIGVKQGGCSGMSYTMEFENRANARPDD 118
           A+E + PAI LT+ ALKHL+KMRSER+EDLCLRIGV+QGGCSGMSYTMEFE+RANARPDD
Sbjct: 58  ASEGIAPAISLTDTALKHLNKMRSERNEDLCLRIGVRQGGCSGMSYTMEFESRANARPDD 117

Query: 119 SVIEYDGFVIVCDPKSLLFLFGMQLDYSDALIGGGFSFKNPNATQTCGCGKSFAAEM 175
           S+IEY+GFVIVCDPKSLLFLFGMQLDYSDALIGGGFSFKNPNATQTCGCGKSF AEM
Sbjct: 118 SIIEYNGFVIVCDPKSLLFLFGMQLDYSDALIGGGFSFKNPNATQTCGCGKSFNAEM 174

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|312282967|dbj|BAJ34349.1| unnamed protein product [Thellungiella halophila]

 Score =  253 bits (647), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 132/177 (74%), Positives = 144/177 (81%), Gaps = 3/177 (1%)

Query: 1   MAFSAVTARCPSLLRLPNGHTPSISVNQ-NSVSF-RFSKLNLSRRYSVSVRSSSTSAVAP 58
           MAF+ +T   P+LL+L    T   SV   NS+SF R S + L+RR  + VRSSS   VAP
Sbjct: 2   MAFTGITTSNPTLLQLRISSTSLRSVIPCNSISFPRSSYVKLNRRNRLYVRSSSV-PVAP 60

Query: 59  ATEDLKPAILLTEKALKHLSKMRSERSEDLCLRIGVKQGGCSGMSYTMEFENRANARPDD 118
           A E LKPAI LT+ ALKHL+KMRSER EDLCLRIGVKQGGCSGMSYTM+FENRANARPDD
Sbjct: 61  AMEGLKPAISLTDNALKHLNKMRSERGEDLCLRIGVKQGGCSGMSYTMDFENRANARPDD 120

Query: 119 SVIEYDGFVIVCDPKSLLFLFGMQLDYSDALIGGGFSFKNPNATQTCGCGKSFAAEM 175
           S IEY GF IVCDPKS+LFLFGMQLDYSDALIGGGFSF NPNATQTCGCGKSFAAEM
Sbjct: 121 STIEYQGFAIVCDPKSMLFLFGMQLDYSDALIGGGFSFSNPNATQTCGCGKSFAAEM 177

Source: Thellungiella halophila

Species: Eutrema halophilum

Genus: Eutrema

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255582815|ref|XP_002532181.1| Iron-sulfur assembly protein IscA, chloroplast precursor, putative [Ricinus communis] gi|223528129|gb|EEF30199.1| Iron-sulfur assembly protein IscA, chloroplast precursor, putative [Ricinus communis]

 Score =  246 bits (627), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 132/179 (73%), Positives = 145/179 (81%), Gaps = 5/179 (2%)

Query: 1   MAFSAVTARCPSLLRLPNGHTPSISVNQNSVSFRFSKLNLSR----RYSVSVRSSSTSAV 56
           MAFSA T   PSLLRL N ++ S     NSVSFR S+LNL+R        SV     +A 
Sbjct: 1   MAFSA-TITTPSLLRLSNRNSASSFSPLNSVSFRSSRLNLNRTSLLSVRSSVSPPVGAAA 59

Query: 57  APATEDLKPAILLTEKALKHLSKMRSERSEDLCLRIGVKQGGCSGMSYTMEFENRANARP 116
           APA+E + PAI +TE AL HL+KMR +R EDLCLRIGVKQGGCSGMSYTMEFENR+NARP
Sbjct: 60  APASEGIAPAISVTENALNHLNKMRKDRDEDLCLRIGVKQGGCSGMSYTMEFENRSNARP 119

Query: 117 DDSVIEYDGFVIVCDPKSLLFLFGMQLDYSDALIGGGFSFKNPNATQTCGCGKSFAAEM 175
           DDSVIEY+GFVIVCDPKSLLF+FGMQLDYSDALIGGGFSFKNPNATQTCGCGKSFAAEM
Sbjct: 120 DDSVIEYNGFVIVCDPKSLLFVFGMQLDYSDALIGGGFSFKNPNATQTCGCGKSFAAEM 178

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255626663|gb|ACU13676.1| unknown [Glycine max]

 Score =  244 bits (624), Expect = 7e-63,   Method: Compositional matrix adjust.
 Identities = 125/176 (71%), Positives = 140/176 (79%), Gaps = 12/176 (6%)

Query: 1   MAFSAVTA-RCPSLLRLPNGHTPSISVNQNSVSFRFSKLNLSRRYSVSVRSSSTSAVAPA 59
           MAFSA+T    P  LRLP          Q+S S RFS   L R   +S+RS S  A APA
Sbjct: 1   MAFSAITTLPSPQFLRLP----------QSSPSLRFSPPILKRPKPLSIRSVSIPA-APA 49

Query: 60  TEDLKPAILLTEKALKHLSKMRSERSEDLCLRIGVKQGGCSGMSYTMEFENRANARPDDS 119
           +  L PA+ LT+ ALKHL+KMRSER++DLCLRIGVKQGGCSGMSYTM+FE+RAN RPDDS
Sbjct: 50  SGSLAPAVSLTDNALKHLNKMRSERNQDLCLRIGVKQGGCSGMSYTMDFEDRANKRPDDS 109

Query: 120 VIEYDGFVIVCDPKSLLFLFGMQLDYSDALIGGGFSFKNPNATQTCGCGKSFAAEM 175
           +IEY+GF IVCDPKSLLF+FGMQLDYSDALIGGGFSFKNPNATQTCGCGKSFAAEM
Sbjct: 110 IIEYEGFEIVCDPKSLLFIFGMQLDYSDALIGGGFSFKNPNATQTCGCGKSFAAEM 165

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356512760|ref|XP_003525084.1| PREDICTED: iron-sulfur assembly protein IscA, chloroplastic-like [Glycine max]

 Score =  240 bits (613), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 123/176 (69%), Positives = 142/176 (80%), Gaps = 8/176 (4%)

Query: 1   MAFSAVTA-RCPSLLRLPNGHTPSISVNQNSVSFRFSKLNLSRRYSVSVRSSSTSAVAPA 59
           MAFSA+T+   P  LRLP      IS+ ++S S RFS   L R   +S+RS S  A APA
Sbjct: 1   MAFSAMTSMHSPQFLRLP------ISLPRSSPSGRFSPPILKRPKPLSIRSVSIPA-APA 53

Query: 60  TEDLKPAILLTEKALKHLSKMRSERSEDLCLRIGVKQGGCSGMSYTMEFENRANARPDDS 119
           +  L PAI +T+  LKHL+KMRSER++DLCLRIGVKQGGCSGMSYTM+FE+R N RPDDS
Sbjct: 54  SGSLAPAISVTDNVLKHLNKMRSERNQDLCLRIGVKQGGCSGMSYTMDFEDRVNKRPDDS 113

Query: 120 VIEYDGFVIVCDPKSLLFLFGMQLDYSDALIGGGFSFKNPNATQTCGCGKSFAAEM 175
           +IEY+GF IVCDPKSLLF+FGMQLDYSDALIGGGFSFKNPNATQTCGCGKSFAAE+
Sbjct: 114 IIEYEGFEIVCDPKSLLFIFGMQLDYSDALIGGGFSFKNPNATQTCGCGKSFAAEI 169

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118489850|gb|ABK96724.1| unknown [Populus trichocarpa x Populus deltoides]

 Score =  240 bits (613), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 124/176 (70%), Positives = 142/176 (80%), Gaps = 5/176 (2%)

Query: 3   FSAVTA--RCPSLLRLP---NGHTPSISVNQNSVSFRFSKLNLSRRYSVSVRSSSTSAVA 57
           FS+ TA    P LLRLP   N  T S S   NS+SFRFS  NLSRR       S++S  +
Sbjct: 4   FSSTTAPPYSPPLLRLPDYTNKKTLSFSSPPNSLSFRFSTSNLSRRNPSLSLQSTSSLAS 63

Query: 58  PATEDLKPAILLTEKALKHLSKMRSERSEDLCLRIGVKQGGCSGMSYTMEFENRANARPD 117
           P  E + PAI +TE ALKHL+++++ER+EDLCLRIGVKQGGCSGMSYTM+FENRANARPD
Sbjct: 64  PPLEGVAPAISVTENALKHLNRIKNERNEDLCLRIGVKQGGCSGMSYTMDFENRANARPD 123

Query: 118 DSVIEYDGFVIVCDPKSLLFLFGMQLDYSDALIGGGFSFKNPNATQTCGCGKSFAA 173
           DS+IE +GFVIVCDPKSLLF+FGMQLDYSDALIGGGFSFKNPNAT+TCGCGKSFAA
Sbjct: 124 DSIIECNGFVIVCDPKSLLFIFGMQLDYSDALIGGGFSFKNPNATKTCGCGKSFAA 179

Source: Populus trichocarpa x Populus deltoides

Species: Populus trichocarpa x Populus deltoides

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118487106|gb|ABK95383.1| unknown [Populus trichocarpa]

 Score =  240 bits (613), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 124/176 (70%), Positives = 142/176 (80%), Gaps = 5/176 (2%)

Query: 3   FSAVTA--RCPSLLRLP---NGHTPSISVNQNSVSFRFSKLNLSRRYSVSVRSSSTSAVA 57
           FS+ TA    P LLRLP   N  T S S   NS+SFRFS  NLSRR       S++S  +
Sbjct: 4   FSSTTAPPYSPPLLRLPDYTNKKTLSFSSPPNSLSFRFSTSNLSRRNPSLSLRSTSSLAS 63

Query: 58  PATEDLKPAILLTEKALKHLSKMRSERSEDLCLRIGVKQGGCSGMSYTMEFENRANARPD 117
           P  E + PAI +TE ALKHL+++++ER+EDLCLRIGVKQGGCSGMSYTM+FENRANARPD
Sbjct: 64  PPLEGVAPAISVTENALKHLNRIKNERNEDLCLRIGVKQGGCSGMSYTMDFENRANARPD 123

Query: 118 DSVIEYDGFVIVCDPKSLLFLFGMQLDYSDALIGGGFSFKNPNATQTCGCGKSFAA 173
           DS+IE +GFVIVCDPKSLLF+FGMQLDYSDALIGGGFSFKNPNAT+TCGCGKSFAA
Sbjct: 124 DSIIECNGFVIVCDPKSLLFIFGMQLDYSDALIGGGFSFKNPNATKTCGCGKSFAA 179

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388494022|gb|AFK35077.1| unknown [Lotus japonicus]

 Score =  240 bits (612), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 118/176 (67%), Positives = 142/176 (80%), Gaps = 8/176 (4%)

Query: 1   MAFSAV-TARCPSLLRLPNGHTPSISVNQNSVSFRFSKLNLSRRYSVSVRSSSTSAVAPA 59
           MAFSA+ T   P  +R      P IS+ Q+      S L  +R  S+S+RS S  A AP+
Sbjct: 1   MAFSAISTTHSPQFVR------PPISLRQHQSQTSVSFLRFNRPKSLSIRSVSVPA-APS 53

Query: 60  TEDLKPAILLTEKALKHLSKMRSERSEDLCLRIGVKQGGCSGMSYTMEFENRANARPDDS 119
           +  + PA+ LT++ALKHL++MRSE+++DLCLRIGVKQGGCSGMSY+M+FE+RAN RPDDS
Sbjct: 54  SGSMAPAVSLTDQALKHLNRMRSEKNQDLCLRIGVKQGGCSGMSYSMDFEDRANTRPDDS 113

Query: 120 VIEYDGFVIVCDPKSLLFLFGMQLDYSDALIGGGFSFKNPNATQTCGCGKSFAAEM 175
           +IEY+GFVIVCDPKSLLF+FGMQLDYSDALIGGGFSFKNPNATQTCGCGKSFAAEM
Sbjct: 114 IIEYEGFVIVCDPKSLLFIFGMQLDYSDALIGGGFSFKNPNATQTCGCGKSFAAEM 169

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225438531|ref|XP_002279428.1| PREDICTED: iron-sulfur assembly protein IscA, chloroplastic-like [Vitis vinifera]

 Score =  240 bits (612), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 126/176 (71%), Positives = 143/176 (81%), Gaps = 4/176 (2%)

Query: 1   MAFSAVTARCPSLLRLP-NGHTPSISVNQNSVSFRFSKLNLSRRYSVSVRSSSTSAVAPA 59
           MAFSA+   CPS LRLP N ++        S+    S L+  +R+S+  RSSS SA AP 
Sbjct: 1   MAFSAIPRCCPSTLRLPRNSNSMPQPSTSVSLRSLSSNLSFPKRFSI--RSSSVSA-APT 57

Query: 60  TEDLKPAILLTEKALKHLSKMRSERSEDLCLRIGVKQGGCSGMSYTMEFENRANARPDDS 119
           T  L PAI LT+ ALKHL+KMRS+R+EDLCLRIGVKQGGCSGMSYTMEFE+RA  RPDDS
Sbjct: 58  TGGLMPAISLTDNALKHLNKMRSDRTEDLCLRIGVKQGGCSGMSYTMEFEDRAKTRPDDS 117

Query: 120 VIEYDGFVIVCDPKSLLFLFGMQLDYSDALIGGGFSFKNPNATQTCGCGKSFAAEM 175
           +IEY+GFVIVCDPKSLLF+FGMQLD+SDALIGGGFSFKNPNATQTCGCGKSFAAEM
Sbjct: 118 IIEYNGFVIVCDPKSLLFVFGMQLDFSDALIGGGFSFKNPNATQTCGCGKSFAAEM 173

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388501986|gb|AFK39059.1| unknown [Lotus japonicus]

 Score =  239 bits (611), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 118/176 (67%), Positives = 142/176 (80%), Gaps = 8/176 (4%)

Query: 1   MAFSAV-TARCPSLLRLPNGHTPSISVNQNSVSFRFSKLNLSRRYSVSVRSSSTSAVAPA 59
           MAFSA+ T   P  +R      P IS+ Q+      S L  +R  S+S+RS S  A AP+
Sbjct: 1   MAFSAISTTHSPQFVR------PPISLRQHQSQTSVSFLRFNRPKSLSIRSVSVPA-APS 53

Query: 60  TEDLKPAILLTEKALKHLSKMRSERSEDLCLRIGVKQGGCSGMSYTMEFENRANARPDDS 119
           +  + PA+ LT++ALKHL++MRSE+++DLCLRIGVKQGGCSGMSY+M+FE+RAN RPDDS
Sbjct: 54  SGSVAPAVSLTDQALKHLNRMRSEKNQDLCLRIGVKQGGCSGMSYSMDFEDRANTRPDDS 113

Query: 120 VIEYDGFVIVCDPKSLLFLFGMQLDYSDALIGGGFSFKNPNATQTCGCGKSFAAEM 175
           +IEY+GFVIVCDPKSLLF+FGMQLDYSDALIGGGFSFKNPNATQTCGCGKSFAAEM
Sbjct: 114 IIEYEGFVIVCDPKSLLFIFGMQLDYSDALIGGGFSFKNPNATQTCGCGKSFAAEM 169

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	175
TAIR|locus:2194594	180	CPISCA "chloroplast-localized	1.0	0.972	0.672	2.9e-55
UNIPROTKB|P72731	118	slr1417 "Uncharacterized prote	0.6	0.889	0.628	1.7e-34
TIGR_CMR|SPO_2620	124	SPO_2620 "iron-sulfur cluster	0.594	0.838	0.429	3.9e-21
UNIPROTKB|Q60C62	128	erpA1 "Iron-sulfur cluster ins	0.622	0.851	0.428	3.5e-20
DICTYBASE|DDB_G0280173	139	isca1 "iron-sulfur cluster ass	0.628	0.791	0.421	1.2e-19
UNIPROTKB|Q8EEU7	107	iscA "FeS cluster assembly ace	0.594	0.971	0.415	8.3e-19
TIGR_CMR|SO_2266	107	SO_2266 "HesB/YadR/YfhF family	0.594	0.971	0.415	8.3e-19
UNIPROTKB|Q9KTY0	107	VC_0750 "HesB family protein"	0.594	0.971	0.415	1.7e-18
TIGR_CMR|VC_0750	107	VC_0750 "HesB/YadR/YfhF family	0.594	0.971	0.415	1.7e-18
UNIPROTKB|Q60AU6	130	erpA2 "Iron-sulfur cluster ins	0.594	0.8	0.411	2.8e-18

TAIR|locus:2194594 CPISCA "chloroplast-localized ISCA-like protein" [Arabidopsis thaliana (taxid:3702)]

 Score = 570 (205.7 bits), Expect = 2.9e-55, P = 2.9e-55
 Identities = 121/180 (67%), Positives = 131/180 (72%)

Query:     1 MAFSA--VTARCPSLLRLPNGHTPSISV-NQNSVSF-RFSKLNLXXXXXXXXXXXXXXXX 56
             MAF+    T+  P+ L L   +T   SV + NS+SF   S +NL                
Sbjct:     1 MAFATGITTSSNPTFLGLKISNTSLRSVVSCNSISFPSLSYVNLNLNRRNRLSVRSASVP 60

Query:    57 XX-XTEDLKPAILLTEKALKHLSKMRSERSEDLCLRIGVKQGGCSGMSYTMEFENRANAR 115
                  E LKPAI L+E ALKHLSKMRSER EDLCLRIGVKQGGCSGMSYTM+FENRANAR
Sbjct:    61 AAPAMEGLKPAISLSENALKHLSKMRSERGEDLCLRIGVKQGGCSGMSYTMDFENRANAR 120

Query:   116 PDDSVIEYDGFVIVCDPKSLLFLFGMQLDYSDALIGGGFSFKNPNATQTCGCGKSFAAEM 175
             PDDS IEY GF IVCDPKS+LFLFGMQLDYSDALIGGGFSF NPNATQTCGCGKSFAAEM
Sbjct:   121 PDDSTIEYQGFTIVCDPKSMLFLFGMQLDYSDALIGGGFSFSNPNATQTCGCGKSFAAEM 180

GO:0005198 "structural molecule activity" evidence=IEA;IDA

GO:0009507 "chloroplast" evidence=ISM

GO:0016226 "iron-sulfur cluster assembly" evidence=IEA;IDA

GO:0051536 "iron-sulfur cluster binding" evidence=IEA

GO:0009570 "chloroplast stroma" evidence=IDA

GO:0042744 "hydrogen peroxide catabolic process" evidence=RCA

UNIPROTKB|P72731 slr1417 "Uncharacterized protein slr1417" [Synechocystis sp. PCC 6803 substr. Kazusa (taxid:1111708)]

 Score = 374 (136.7 bits), Expect = 1.7e-34, P = 1.7e-34
 Identities = 66/105 (62%), Positives = 83/105 (79%)

Query:    67 ILLTEKALKHLSKMRSERSEDLCLRIGVKQGGCSGMSYTMEFENRANARPDDSVIEYDGF 126
             I L++ ALKHL  ++ ++ +DLCLR+GV+QGGCSGMSY M+FE    A   D V +Y+GF
Sbjct:    12 IQLSDAALKHLLALKEQQGKDLCLRVGVRQGGCSGMSYMMDFEEPNRATEHDEVFDYEGF 71

Query:   127 VIVCDPKSLLFLFGMQLDYSDALIGGGFSFKNPNATQTCGCGKSF 171
              I+CD KSLL+L+G+ LDYS+ALIGGGF F NPNA QTCGCGKSF
Sbjct:    72 QIICDRKSLLYLYGLMLDYSNALIGGGFQFTNPNANQTCGCGKSF 116

GO:0005506 "iron ion binding" evidence=IDA

GO:0042802 "identical protein binding" evidence=IDA

GO:0051537 "2 iron, 2 sulfur cluster binding" evidence=IDA

TIGR_CMR|SPO_2620 SPO_2620 "iron-sulfur cluster assembly accessory protein" [Ruegeria pomeroyi DSS-3 (taxid:246200)]

 Score = 248 (92.4 bits), Expect = 3.9e-21, P = 3.9e-21
 Identities = 46/107 (42%), Positives = 71/107 (66%)

Query:    64 KPAILLTEKALKHLSKMRSERSEDLCLRIGVKQGGCSGMSYTMEFENRANARPDDSVIEY 123
             K A+ +T +A   ++++  ++     LRIGVK+GGC+GM YTM++ ++A+  P D V+E 
Sbjct:    11 KQAVTMTPRAATQIARLM-DKGGHTGLRIGVKKGGCAGMEYTMDYVDQAD--PHDEVVEQ 67

Query:   124 DGFVIVCDPKSLLFLFGMQLDYSDALIGGGFSFKNPNATQTCGCGKS 170
             DG  I+  P + +FLFG ++DY  +L+  GF FKNPN    CGCG+S
Sbjct:    68 DGARILIAPMAQMFLFGTEIDYEVSLLESGFKFKNPNVVDACGCGES 114

GO:0005198 "structural molecule activity" evidence=ISS

GO:0016226 "iron-sulfur cluster assembly" evidence=ISS

UNIPROTKB|Q60C62 erpA1 "Iron-sulfur cluster insertion protein ErpA 1" [Methylococcus capsulatus str. Bath (taxid:243233)]

 Score = 239 (89.2 bits), Expect = 3.5e-20, P = 3.5e-20
 Identities = 48/112 (42%), Positives = 67/112 (59%)

Query:    64 KPAILLTEKALKHLSKMRSERSED-LCLRIGVKQGGCSGMSYTMEFENRANARPDDSVIE 122
             +PA++ T  A   +S++ +E     L LR+ V  GGCSGM Y   FE   N   DD+ +E
Sbjct:    11 EPALIFTGNAAAKVSELIAEEGNPALKLRVYVSGGGCSGMQYGFAFEEAVNE--DDTTVE 68

Query:   123 YDGFVIVCDPKSLLFLFGMQLDYSDALIGGGFSFKNPNATQTCGCGKSFAAE 174
              DG V++ DP SL +L G ++DY + L G  F  KNPNAT +C CG SF+ +
Sbjct:    69 KDGVVLLVDPTSLQYLQGAEIDYQEGLEGSRFVIKNPNATSSCSCGSSFSVD 120

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

DICTYBASE|DDB_G0280173 isca1 "iron-sulfur cluster assembly 1 homolog" [Dictyostelium discoideum (taxid:44689)]

 Score = 234 (87.4 bits), Expect = 1.2e-19, P = 1.2e-19
 Identities = 48/114 (42%), Positives = 74/114 (64%)

Query:    64 KPAIL-LTEKALKHLSKMRSERSEDLC--LRIGVKQGGCSGMSYTMEFENRANARPDDSV 120
             K AI  +T+ ALK + ++ +++  D C  LR+G+K+ GCSGMSYT++F  + N + D++V
Sbjct:    14 KKAIFSMTDSALKRVKEIMNDKKIDNCIGLRLGIKERGCSGMSYTLDFATQKN-KFDETV 72

Query:   121 IEYDGFVIVCDPKSLLFLFGMQLDYSDALIGGGFSFKNPNATQTCGCGKSFAAE 174
             +      I+ D K+LL + G ++DY +  I   F F NPNAT TCGCG+SF  +
Sbjct:    73 VADKDINIIVDSKALLSVIGTEMDYIEEPIKKEFIFINPNATNTCGCGESFTTK 126

GO:0051536 "iron-sulfur cluster binding" evidence=IEA;IC

GO:0016226 "iron-sulfur cluster assembly" evidence=IEA;ISS

GO:0005198 "structural molecule activity" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA;ISS

GO:0046872 "metal ion binding" evidence=IEA

UNIPROTKB|Q8EEU7 iscA "FeS cluster assembly acessory protein IscA" [Shewanella oneidensis MR-1 (taxid:211586)]

 Score = 226 (84.6 bits), Expect = 8.3e-19, P = 8.3e-19
 Identities = 44/106 (41%), Positives = 64/106 (60%)

Query:    66 AILLTEKALKHLSKMRSERSEDLCLRIGVKQGGCSGMSYTMEFENRANARPDDSVIEYDG 125
             AI +T  A + +    + R + + LR+G+K  GCSGM+Y +EF +  N   DD V + DG
Sbjct:     2 AITMTPAATERVRSFLANRGKGIGLRLGLKTSGCSGMAYVLEFVDALN--DDDEVYDIDG 59

Query:   126 FVIVCDPKSLLFLFGMQLDYSDALIGGGFSFKNPNATQTCGCGKSF 171
               I+ D KS ++L G++LD+    +  GF F NPNA   CGCG+SF
Sbjct:    60 VKIIIDAKSFIYLQGIELDFVKEGLNEGFQFNNPNAKGECGCGESF 105

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|SO_2266 SO_2266 "HesB/YadR/YfhF family protein" [Shewanella oneidensis MR-1 (taxid:211586)]

 Score = 226 (84.6 bits), Expect = 8.3e-19, P = 8.3e-19
 Identities = 44/106 (41%), Positives = 64/106 (60%)

Query:    66 AILLTEKALKHLSKMRSERSEDLCLRIGVKQGGCSGMSYTMEFENRANARPDDSVIEYDG 125
             AI +T  A + +    + R + + LR+G+K  GCSGM+Y +EF +  N   DD V + DG
Sbjct:     2 AITMTPAATERVRSFLANRGKGIGLRLGLKTSGCSGMAYVLEFVDALN--DDDEVYDIDG 59

Query:   126 FVIVCDPKSLLFLFGMQLDYSDALIGGGFSFKNPNATQTCGCGKSF 171
               I+ D KS ++L G++LD+    +  GF F NPNA   CGCG+SF
Sbjct:    60 VKIIIDAKSFIYLQGIELDFVKEGLNEGFQFNNPNAKGECGCGESF 105

GO:0008150 "biological_process" evidence=ND

GO:0003674 "molecular_function" evidence=ND

UNIPROTKB|Q9KTY0 VC_0750 "HesB family protein" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)]

 Score = 223 (83.6 bits), Expect = 1.7e-18, P = 1.7e-18
 Identities = 44/106 (41%), Positives = 61/106 (57%)

Query:    66 AILLTEKALKHLSKMRSERSEDLCLRIGVKQGGCSGMSYTMEFENRANARPDDSVIEYDG 125
             A+ L+E A   +      R + + LR+GVK  GCSGM+Y +EF +  N   +D V E  G
Sbjct:     2 AVTLSETAASRVKTFLDNRGKGIGLRLGVKTTGCSGMAYVLEFVDDLNE--EDHVFESHG 59

Query:   126 FVIVCDPKSLLFLFGMQLDYSDALIGGGFSFKNPNATQTCGCGKSF 171
               ++ D KS+++L G QLDY    +  GF F NPN    CGCG+SF
Sbjct:    60 VKVIIDTKSMVYLDGTQLDYKKEGLNEGFEFNNPNVKSECGCGESF 105

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|VC_0750 VC_0750 "HesB/YadR/YfhF family protein" [Vibrio cholerae O1 biovar El Tor (taxid:686)]

 Score = 223 (83.6 bits), Expect = 1.7e-18, P = 1.7e-18
 Identities = 44/106 (41%), Positives = 61/106 (57%)

Query:    66 AILLTEKALKHLSKMRSERSEDLCLRIGVKQGGCSGMSYTMEFENRANARPDDSVIEYDG 125
             A+ L+E A   +      R + + LR+GVK  GCSGM+Y +EF +  N   +D V E  G
Sbjct:     2 AVTLSETAASRVKTFLDNRGKGIGLRLGVKTTGCSGMAYVLEFVDDLNE--EDHVFESHG 59

Query:   126 FVIVCDPKSLLFLFGMQLDYSDALIGGGFSFKNPNATQTCGCGKSF 171
               ++ D KS+++L G QLDY    +  GF F NPN    CGCG+SF
Sbjct:    60 VKVIIDTKSMVYLDGTQLDYKKEGLNEGFEFNNPNVKSECGCGESF 105

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q60AU6 erpA2 "Iron-sulfur cluster insertion protein ErpA 2" [Methylococcus capsulatus str. Bath (taxid:243233)]

 Score = 221 (82.9 bits), Expect = 2.8e-18, P = 2.8e-18
 Identities = 44/107 (41%), Positives = 67/107 (62%)

Query:    67 ILLTEKALKHLSKMRSERSE-DLCLRIGVKQGGCSGMSYTMEFENRANARPDDSVIEYDG 125
             I  T+ A + +S++ +E  + +L LR+ V  GGCSG  Y   F+   N   DD+V+E +G
Sbjct:    25 IKFTDSAAQRVSELLAEEGDQNLKLRVYVTGGGCSGFQYGFTFDEVVNE--DDTVVEKNG 82

Query:   126 FVIVCDPKSLLFLFGMQLDYSDALIGGGFSFKNPNATQTCGCGKSFA 172
               ++ DP SL +L G ++DY++ + G  F  +NPNAT TCGCG SF+
Sbjct:    83 VSVLVDPMSLQYLQGAEIDYTENVSGSQFVIRNPNATTTCGCGSSFS 129

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9XIK3	ISCAP_ARATH	No assigned EC number	0.7292	0.9942	0.9666	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	175
TIGR00049	105	TIGR00049, TIGR00049, Iron-sulfur cluster assembly	1e-52
COG0316	110	COG0316, sufA, Fe-S cluster assembly scaffold prot	6e-47
pfam01521	91	pfam01521, Fe-S_biosyn, Iron-sulphur cluster biosy	5e-37
TIGR02011	105	TIGR02011, IscA, iron-sulfur cluster assembly prot	7e-31
PRK13623	115	PRK13623, PRK13623, iron-sulfur cluster insertion	5e-28
TIGR01997	107	TIGR01997, sufA_proteo, FeS assembly scaffold SufA	3e-27
PRK09502	107	PRK09502, iscA, iron-sulfur cluster assembly prote	4e-25
PRK09504	122	PRK09504, sufA, iron-sulfur cluster assembly scaff	9e-18
PLN03082	163	PLN03082, PLN03082, Iron-sulfur cluster assembly;	2e-17
TIGR03341	190	TIGR03341, YhgI_GntY, IscR-regulated protein YhgI	4e-09
PRK11190	192	PRK11190, PRK11190, Fe/S biogenesis protein NfuA;	2e-05

>gnl|CDD|232799 TIGR00049, TIGR00049, Iron-sulfur cluster assembly accessory protein

 Score =  162 bits (413), Expect = 1e-52
 Identities = 53/106 (50%), Positives = 70/106 (66%), Gaps = 3/106 (2%)

Query: 69  LTEKALKHLSKMRSERSED-LCLRIGVKQGGCSGMSYTMEFENRANARPDDSVIEYDGFV 127
           LT+ A K +  + +   E  L LR+GVK GGCSG+ Y +EF++  N   DD V E DG  
Sbjct: 2   LTDSAAKRIKALLAGEGEPNLGLRVGVKGGGCSGLQYGLEFDDEPN--EDDEVFEQDGVK 59

Query: 128 IVCDPKSLLFLFGMQLDYSDALIGGGFSFKNPNATQTCGCGKSFAA 173
           +V DPKSL +L G ++DY + L+G GF+F NPNA  TCGCGKSF+ 
Sbjct: 60  VVVDPKSLPYLDGSEIDYVEELLGSGFTFTNPNAKGTCGCGKSFSV 105

Proteins in this subfamily appear to be associated with the process of FeS-cluster assembly. The HesB proteins are associated with the nif gene cluster and the Rhizobium gene IscN has been shown to be required for nitrogen fixation. Nitrogenase includes multiple FeS clusters and many genes for their assembly. The E. coli SufA protein is associated with SufS, a NifS homolog and SufD which are involved in the FeS cluster assembly of the FhnF protein. The Azotobacter protein IscA (homologs of which are also found in E.coli) is associated which IscS, another NifS homolog and IscU, a nifU homolog as well as other factors consistent with a role in FeS cluster chemistry. A homolog from Geobacter contains a selenocysteine in place of an otherwise invariant cysteine, further suggesting a role in redox chemistry [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]. Length = 105

>gnl|CDD|223393 COG0316, sufA, Fe-S cluster assembly scaffold protein [Posttranslational modification, protein turnover, chaperones]

 Score =  148 bits (376), Expect = 6e-47
 Identities = 52/109 (47%), Positives = 72/109 (66%), Gaps = 3/109 (2%)

Query: 64  KPAILLTEKALKHLSKMRSERS-EDLCLRIGVKQGGCSGMSYTMEFENRANARPDDSVIE 122
              I LT+ A   +  + ++   E+L LR+GVK GGCSG  Y +EF++  N   DD+V E
Sbjct: 2   AMMITLTDAAAARVKALLAKEGEENLGLRVGVKGGGCSGFQYGLEFDDEINE--DDTVFE 59

Query: 123 YDGFVIVCDPKSLLFLFGMQLDYSDALIGGGFSFKNPNATQTCGCGKSF 171
            DG  +V DPKSL +L G ++DY + L+G GF+FKNPNA  +CGCG+SF
Sbjct: 60  QDGVKVVVDPKSLPYLEGTEIDYVEDLLGSGFTFKNPNAKSSCGCGESF 108

Length = 110

>gnl|CDD|110518 pfam01521, Fe-S_biosyn, Iron-sulphur cluster biosynthesis

 Score =  122 bits (309), Expect = 5e-37
 Identities = 41/93 (44%), Positives = 57/93 (61%), Gaps = 2/93 (2%)

Query: 67  ILLTEKALKHLSKMRSERSEDLCLRIGVKQGGCSGMSYTMEFENRANARPDDSVIEYDGF 126
           I LT+ A KH+ K+      +  LRIGV+ GGCSG SY + FE+  +    D V E DG 
Sbjct: 1   ITLTDAAAKHIKKLLDLEGGENGLRIGVRYGGCSGFSYGLTFEDEPD--EGDEVFEQDGV 58

Query: 127 VIVCDPKSLLFLFGMQLDYSDALIGGGFSFKNP 159
            +V D KSL +L G ++D+ + L+G GF+F NP
Sbjct: 59  TVVVDEKSLPYLEGTEIDFVEELLGSGFTFSNP 91

This family is involved in iron-sulphur cluster biosynthesis. Its members include proteins that are involved in nitrogen fixation such as the HesB and HesB-like proteins. Length = 91

>gnl|CDD|213674 TIGR02011, IscA, iron-sulfur cluster assembly protein IscA

 Score =  107 bits (269), Expect = 7e-31
 Identities = 47/105 (44%), Positives = 60/105 (57%), Gaps = 2/105 (1%)

Query: 67  ILLTEKALKHLSKMRSERSEDLCLRIGVKQGGCSGMSYTMEFENRANARPDDSVIEYDGF 126
           I LT+ A   ++   + R +   LR+GVK  GCSGM+Y +EF +     PDD V E  G 
Sbjct: 1   ITLTDSAAARVNTFLANRGKGFGLRLGVKTSGCSGMAYVLEFVDEPT--PDDIVFEDKGV 58

Query: 127 VIVCDPKSLLFLFGMQLDYSDALIGGGFSFKNPNATQTCGCGKSF 171
            IV D KSL +L G QLD+    +  GF F NPN    CGCG+SF
Sbjct: 59  KIVIDGKSLQYLDGTQLDFVKEGLNEGFKFTNPNVKDECGCGESF 103

This model represents the IscA component of the ISC system for iron-sulfur cluster assembly. The ISC system consists of IscRASU, HscAB and an Isc-specific ferredoxin. IscA previously was believed to act as a scaffold and now is seen as an iron donor protein. This clade is limited to the proteobacteria [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]. Length = 105

>gnl|CDD|184186 PRK13623, PRK13623, iron-sulfur cluster insertion protein ErpA; Provisional

 Score =  100 bits (252), Expect = 5e-28
 Identities = 45/117 (38%), Positives = 67/117 (57%), Gaps = 3/117 (2%)

Query: 58  PATEDLKPAILLTEKALKHLSKMRSER-SEDLCLRIGVKQGGCSGMSYTMEFENRANARP 116
             ++D+   ++ T+ A   + ++  E  + DL LR+ +  GGCSG  Y   F+ + N   
Sbjct: 1   MMSDDVPLPLVFTDAAAAKVKELIEEEGNPDLKLRVYITGGGCSGFQYGFTFDEQVNE-- 58

Query: 117 DDSVIEYDGFVIVCDPKSLLFLFGMQLDYSDALIGGGFSFKNPNATQTCGCGKSFAA 173
           DD+ IE  G  +V DP SL +L G ++DY++ L G  F  KNPNA  TCGCG SF+ 
Sbjct: 59  DDTTIEKQGVTLVVDPMSLQYLVGAEVDYTEGLEGSRFVIKNPNAKTTCGCGSSFSI 115

Length = 115

>gnl|CDD|131052 TIGR01997, sufA_proteo, FeS assembly scaffold SufA

 Score = 98.4 bits (245), Expect = 3e-27
 Identities = 42/105 (40%), Positives = 67/105 (63%), Gaps = 2/105 (1%)

Query: 67  ILLTEKALKHLSKMRSERSEDLCLRIGVKQGGCSGMSYTMEFENRANARPDDSVIEYDGF 126
           I LT+ A  H+ ++ ++R E + +R+GVK+ GC+GM Y ++  +      DD +IE+DG 
Sbjct: 3   ITLTDAAAIHIRELVAKRPEAVGIRLGVKKTGCAGMEYVLDLVSEPKK--DDDLIEHDGA 60

Query: 127 VIVCDPKSLLFLFGMQLDYSDALIGGGFSFKNPNATQTCGCGKSF 171
            +   P+++LF+ G Q+D+    +  GF F NPNAT  CGCG+SF
Sbjct: 61  KVFVAPEAVLFILGTQVDFVRTTLRQGFKFNNPNATSACGCGESF 105

This model represents the SufA protein of the SUF system of iron-sulfur cluster biosynthesis. This system performs FeS biosynthesis even during oxidative stress and tends to be absent in obligate anaerobic and microaerophilic bacteria [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]. Length = 107

>gnl|CDD|181914 PRK09502, iscA, iron-sulfur cluster assembly protein; Provisional

 Score = 93.0 bits (231), Expect = 4e-25
 Identities = 44/106 (41%), Positives = 61/106 (57%), Gaps = 2/106 (1%)

Query: 66  AILLTEKALKHLSKMRSERSEDLCLRIGVKQGGCSGMSYTMEFENRANARPDDSVIEYDG 125
           +I L++ A   ++   + R +   LR+GV+  GCSGM+Y +EF +     P+D V E  G
Sbjct: 2   SITLSDSAAARVNTFLANRGKGFGLRLGVRTSGCSGMAYVLEFVDEPT--PEDIVFEDKG 59

Query: 126 FVIVCDPKSLLFLFGMQLDYSDALIGGGFSFKNPNATQTCGCGKSF 171
             +V D KSL FL G QLD+    +  GF F NPN    CGCG+SF
Sbjct: 60  VKVVVDGKSLQFLDGTQLDFVKEGLNEGFKFTNPNVKDECGCGESF 105

Length = 107

>gnl|CDD|181915 PRK09504, sufA, iron-sulfur cluster assembly scaffold protein; Provisional

 Score = 74.4 bits (183), Expect = 9e-18
 Identities = 34/105 (32%), Positives = 58/105 (55%), Gaps = 2/105 (1%)

Query: 67  ILLTEKALKHLSKMRSERSEDLCLRIGVKQGGCSGMSYTMEFENRANARPDDSVIEYDGF 126
           + LT  A  H+ ++ +++     +R+GVKQ GC+G  Y ++  +  +   DD V E+DG 
Sbjct: 18  LTLTPAAAAHIRELMAKQPGMKGVRLGVKQTGCAGFGYVLDSVSEPD--KDDLVFEHDGA 75

Query: 127 VIVCDPKSLLFLFGMQLDYSDALIGGGFSFKNPNATQTCGCGKSF 171
            +    +++ F+ G ++DY    +   F F NP A   CGCG+SF
Sbjct: 76  KLFVPLQAMPFIDGTEVDYVREGLNQIFKFHNPKAQNECGCGESF 120

Length = 122

>gnl|CDD|215564 PLN03082, PLN03082, Iron-sulfur cluster assembly; Provisional

 Score = 75.0 bits (184), Expect = 2e-17
 Identities = 45/135 (33%), Positives = 74/135 (54%), Gaps = 5/135 (3%)

Query: 40  LSRRYSVSVRSSSTSAVAPATEDLKPAILLTEKALKHLSKMRSER--SEDLCLRIGVKQG 97
           L+   S +++ +STS+ +P++     A+ +T+  ++ L ++++    +ED  LR+ V+ G
Sbjct: 28  LNFSSSSALKEASTSSSSPSSSASLDAVHMTDNCIRRLKELQTSEPSAEDKMLRLSVETG 87

Query: 98  GCSGMSYTMEFENRANARPDDSVIEYDGFVIVCDPKSLLFLFGMQLDYSDALIGGGFSFK 157
           GCSG  Y  E +++ N   DD V E DG  +V D  S  F+ G  +DY + LI   F   
Sbjct: 88  GCSGFQYVFELDDKTN--SDDRVFEKDGVKLVVDNISYDFVKGATVDYVEELIRSAFVVS 145

Query: 158 -NPNATQTCGCGKSF 171
            NP+A   C C  SF
Sbjct: 146 TNPSAVGGCSCKSSF 160

Length = 163

>gnl|CDD|132384 TIGR03341, YhgI_GntY, IscR-regulated protein YhgI

 Score = 53.1 bits (128), Expect = 4e-09
 Identities = 29/99 (29%), Positives = 47/99 (47%), Gaps = 8/99 (8%)

Query: 67  ILLTEKALKHLSKMRSERSEDLCLRIGVKQGGCS----GMSYTMEFENRANARPDDSVIE 122
           I +TE A  +L+K+ ++++E   +R+ V   G       +SY    E      P D  +E
Sbjct: 1   ITITEAAQAYLAKLLAKQNEGTGIRVFVVNPGTPYAECCVSYCPPDE----VEPSDIKLE 56

Query: 123 YDGFVIVCDPKSLLFLFGMQLDYSDALIGGGFSFKNPNA 161
           ++GF    D  S  FL    +D+    +GG  + K PNA
Sbjct: 57  FNGFSAYVDALSAPFLEDAVIDFVTDRMGGQLTLKAPNA 95

IscR (TIGR02010) is an iron-sulfur cluster-binding transcriptional regulator (see Genome Property GenProp0138). Members of this protein family include YhgI, whose expression is under control of IscR, and show sequence similarity to IscA, a known protein of iron-sulfur cluster biosynthesis. These two lines of evidence strongly suggest a role as an iron-sulfur cluster biosynthesis protein. An older study designated this protein GntY and suggested a role for it and for the product of an adjacent gene, based on complementation studies, in gluconate utilization [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]. Length = 190

>gnl|CDD|183027 PRK11190, PRK11190, Fe/S biogenesis protein NfuA; Provisional

 Score = 42.7 bits (101), Expect = 2e-05
 Identities = 26/101 (25%), Positives = 46/101 (45%), Gaps = 12/101 (11%)

Query: 67  ILLTEKALKHLSKMRSERSEDLCLRI-----GVKQGGCSGMSYTMEFENRANA-RPDDSV 120
           I +++ A  H +K+ + + E   +R+     G     C G+SY        +A    D+ 
Sbjct: 2   ITISDAAQAHFAKLLANQEEGTQIRVFVINPGTPNAEC-GVSYC-----PPDAVEATDTE 55

Query: 121 IEYDGFVIVCDPKSLLFLFGMQLDYSDALIGGGFSFKNPNA 161
           +++DGF    D  S  FL   ++D+    +G   + K PNA
Sbjct: 56  LKFDGFSAYVDELSAPFLEDAEIDFVTDQLGSQLTLKAPNA 96

Length = 192

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	175
COG0316	110	sufA Fe-S cluster assembly scaffold protein [Postt	100.0
PLN03082	163	Iron-sulfur cluster assembly; Provisional	100.0
PRK09502	107	iscA iron-sulfur cluster assembly protein; Provisi	100.0
PRK13623	115	iron-sulfur cluster insertion protein ErpA; Provis	100.0
PRK09504	122	sufA iron-sulfur cluster assembly scaffold protein	100.0
TIGR02011	105	IscA iron-sulfur cluster assembly protein IscA. Th	100.0
TIGR01997	107	sufA_proteo FeS assembly scaffold SufA. This model	100.0
KOG1120	134	consensus Fe-S cluster biosynthesis protein ISA1 (	100.0
TIGR00049	105	Iron-sulfur cluster assembly accessory protein. Pr	100.0
KOG1119	199	consensus Mitochondrial Fe-S cluster biosynthesis	99.94
PRK11190	192	Fe/S biogenesis protein NfuA; Provisional	99.93
TIGR01911	92	HesB_rel_seleno HesB-like selenoprotein. This mode	99.92
TIGR03341	190	YhgI_GntY IscR-regulated protein YhgI. IscR (TIGR0	99.92
PF01521	112	Fe-S_biosyn: Iron-sulphur cluster biosynthesis; In	99.9
COG4841	95	Uncharacterized protein conserved in bacteria [Fun	99.65
COG4918	114	Uncharacterized protein conserved in bacteria [Fun	98.73
COG3564	116	Uncharacterized protein conserved in bacteria [Fun	97.64
PF05610	95	DUF779: Protein of unknown function (DUF779); Inte	96.48

>COG0316 sufA Fe-S cluster assembly scaffold protein [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=7.5e-37  Score=228.23  Aligned_cols=108  Identities=48%  Similarity=0.919  Sum_probs=102.7

Q ss_pred             CCceeeCHHHHHHHHHHHhcC-CCCceEEEEEecCCCCCceeeEEEecccCCCCCCceeeeCCEEEEEcccccccccCcE
Q 030533           64 KPAILLTEKALKHLSKMRSER-SEDLCLRIGVKQGGCSGMSYTMEFENRANARPDDSVIEYDGFVIVCDPKSLLFLFGMQ  142 (175)
Q Consensus        64 ~~~ItIT~~A~~~Lk~l~~~~-~~~~~LRI~v~~~GCsG~~y~l~l~~~~~~~~~D~vie~~Gi~v~iD~~s~~~L~g~~  142 (175)
                      .++|+|||+|+++++++++++ +++.+|||+|+++||+|++|.|.|+++.+  ++|.++|.+|++|+||+.++.||+|++
T Consensus         2 ~~~itlT~~Aa~~v~~ll~~~~~~~~~lRv~V~~gGCsG~~Y~~~~~~~~~--~~D~v~e~~g~~v~vD~~S~~~L~G~~   79 (110)
T COG0316           2 AMMITLTDAAAARVKALLAKEGEENLGLRVGVKGGGCSGFQYGLEFDDEIN--EDDTVFEQDGVKVVVDPKSLPYLEGTE   79 (110)
T ss_pred             CCceeeCHHHHHHHHHHHHhccCCCceEEEEEeCCCCCCcEeEEEEcCCCC--CCCEEEEeCCEEEEEChhhhhhhcCCE
Confidence            478999999999999999887 56789999999999999999999999765  899999999999999999999999999


Q ss_pred             EEeecCCCccceEEeCCCCCCCCCCCCCccc
Q 030533          143 LDYSDALIGGGFSFKNPNATQTCGCGKSFAA  173 (175)
Q Consensus       143 IDy~e~~~g~gF~~~nPn~~~~CGCG~SF~~  173 (175)
                      |||+++..|++|+|+|||++..||||+||..
T Consensus        80 IDyv~~~~g~~F~~~NPNA~~~CgCg~Sf~v  110 (110)
T COG0316          80 IDYVEDLLGSGFTFKNPNAKSSCGCGESFSV  110 (110)
T ss_pred             EEEEEcCcCCceEEECCCCCccccCCCCCCC
Confidence            9999999999999999999999999999973

>PLN03082 Iron-sulfur cluster assembly; Provisional

Probab=100.00  E-value=6.5e-37  Score=242.79  Aligned_cols=113  Identities=35%  Similarity=0.677  Sum_probs=103.3

Q ss_pred             CCCCCCceeeCHHHHHHHHHHHhcCC--CCceEEEEEecCCCCCceeeEEEecccCCCCCCceeeeCCEEEEEccccccc
Q 030533           60 TEDLKPAILLTEKALKHLSKMRSERS--EDLCLRIGVKQGGCSGMSYTMEFENRANARPDDSVIEYDGFVIVCDPKSLLF  137 (175)
Q Consensus        60 ~~~~~~~ItIT~~A~~~Lk~l~~~~~--~~~~LRI~v~~~GCsG~~y~l~l~~~~~~~~~D~vie~~Gi~v~iD~~s~~~  137 (175)
                      ..+..+.|+|||+|+++|++++++++  ++.+|||+|+++||+|++|.|.|+++.+  ++|.+++.+|++|+||+.++.|
T Consensus        48 ~~~~~~~I~lTd~A~~~ik~l~~~~~~~~~~~LRl~V~~gGCSG~~Y~~~ld~~~~--~~D~v~e~~Gv~vvVD~~s~~~  125 (163)
T PLN03082         48 SSASLDAVHMTDNCIRRLKELQTSEPSAEDKMLRLSVETGGCSGFQYVFELDDKTN--SDDRVFEKDGVKLVVDNISYDF  125 (163)
T ss_pred             ccccCCceEECHHHHHHHHHHHHhCCCCCCceEEEEEecCCCCCceeeeEEccCCC--CCCEEEecCCeEEEECHHHHHH
Confidence            33445679999999999999987754  3568999999999999999999998764  7999999999999999999999


Q ss_pred             ccCcEEEeecCCCccceEE-eCCCCCCCCCCCCCcccc
Q 030533          138 LFGMQLDYSDALIGGGFSF-KNPNATQTCGCGKSFAAE  174 (175)
Q Consensus       138 L~g~~IDy~e~~~g~gF~~-~nPn~~~~CGCG~SF~~~  174 (175)
                      |+|++|||++++.+.+|+| +|||++++||||+||+.|
T Consensus       126 L~Gs~IDYve~l~~~gF~f~~NPna~~~CgCG~SF~vk  163 (163)
T PLN03082        126 VKGATVDYVEELIRSAFVVSTNPSAVGGCSCKSSFMVK  163 (163)
T ss_pred             hCCCEEEeecCCCCCeeEEecCCCCCCCcCCCCCEeCC
Confidence            9999999999999999999 999999999999999875

>PRK09502 iscA iron-sulfur cluster assembly protein; Provisional

Probab=100.00  E-value=5e-36  Score=222.44  Aligned_cols=107  Identities=41%  Similarity=0.785  Sum_probs=99.7

Q ss_pred             CceeeCHHHHHHHHHHHhcCCCCceEEEEEecCCCCCceeeEEEecccCCCCCCceeeeCCEEEEEcccccccccCcEEE
Q 030533           65 PAILLTEKALKHLSKMRSERSEDLCLRIGVKQGGCSGMSYTMEFENRANARPDDSVIEYDGFVIVCDPKSLLFLFGMQLD  144 (175)
Q Consensus        65 ~~ItIT~~A~~~Lk~l~~~~~~~~~LRI~v~~~GCsG~~y~l~l~~~~~~~~~D~vie~~Gi~v~iD~~s~~~L~g~~ID  144 (175)
                      |+|+|||+|+++|+++++++++..+|||+++++||+|++|.|.|++..+  ++|.+++.+|++|+||+.++.||+|++||
T Consensus         1 m~i~iT~~A~~~i~~l~~~~~~~~~LRi~v~~~GCsG~~Y~l~~~~~~~--~~D~~~~~~g~~v~id~~s~~~l~g~~ID   78 (107)
T PRK09502          1 MSITLSDSAAARVNTFLANRGKGFGLRLGVRTSGCSGMAYVLEFVDEPT--PEDIVFEDKGVKVVVDGKSLQFLDGTQLD   78 (107)
T ss_pred             CeEEECHHHHHHHHHHHhCcCCCceEEEEEECCCcCCeeeEeeecCCCC--CCCEEEEcCCeEEEEeHHHHhHhCCCEEE
Confidence            4699999999999999987655668999999999999999999976654  89999999999999999999999999999


Q ss_pred             eecCCCccceEEeCCCCCCCCCCCCCccc
Q 030533          145 YSDALIGGGFSFKNPNATQTCGCGKSFAA  173 (175)
Q Consensus       145 y~e~~~g~gF~~~nPn~~~~CGCG~SF~~  173 (175)
                      |++++.+++|+|+|||++++||||+||+.
T Consensus        79 y~~~~~~~~F~f~NPna~~~CgCG~Sf~~  107 (107)
T PRK09502         79 FVKEGLNEGFKFTNPNVKDECGCGESFHV  107 (107)
T ss_pred             EeeCCCCceEEEECCCCCCccCCCCCeeC
Confidence            99999999999999999999999999973

>PRK13623 iron-sulfur cluster insertion protein ErpA; Provisional

Probab=100.00  E-value=1e-35  Score=223.09  Aligned_cols=111  Identities=41%  Similarity=0.801  Sum_probs=102.0

Q ss_pred             CCCCCceeeCHHHHHHHHHHHhcCC-CCceEEEEEecCCCCCceeeEEEecccCCCCCCceeeeCCEEEEEccccccccc
Q 030533           61 EDLKPAILLTEKALKHLSKMRSERS-EDLCLRIGVKQGGCSGMSYTMEFENRANARPDDSVIEYDGFVIVCDPKSLLFLF  139 (175)
Q Consensus        61 ~~~~~~ItIT~~A~~~Lk~l~~~~~-~~~~LRI~v~~~GCsG~~y~l~l~~~~~~~~~D~vie~~Gi~v~iD~~s~~~L~  139 (175)
                      +...|+|+||++|+++|+++++.++ ++.+|||+|+++||+|++|.|.++++.+  ++|++++.+|++|+||+.+++||+
T Consensus         4 ~~~~~~i~iT~~A~~~i~~~~~~~~~~~~~LRi~v~~~GCsG~~y~l~l~~~~~--~~D~v~e~~gv~v~id~~s~~~l~   81 (115)
T PRK13623          4 DDVPLPLVFTDAAAAKVKELIEEEGNPDLKLRVYITGGGCSGFQYGFTFDEQVN--EDDTTIEKQGVTLVVDPMSLQYLV   81 (115)
T ss_pred             cccCcceEECHHHHHHHHHHHhhCCCCceEEEEEEeCCCCCCcEEEEEECCCCC--CCCEEEEcCCEEEEEcHHHHHHhC
Confidence            3566899999999999999997653 3467999999999999999999998654  799999999999999999999999


Q ss_pred             CcEEEeecCCCccceEEeCCCCCCCCCCCCCccc
Q 030533          140 GMQLDYSDALIGGGFSFKNPNATQTCGCGKSFAA  173 (175)
Q Consensus       140 g~~IDy~e~~~g~gF~~~nPn~~~~CGCG~SF~~  173 (175)
                      |++|||+++..+++|+|+|||++++||||+||+.
T Consensus        82 g~~IDy~~~~~~~~F~f~NPn~~~~CgCg~SF~~  115 (115)
T PRK13623         82 GAEVDYTEGLEGSRFVIKNPNAKTTCGCGSSFSI  115 (115)
T ss_pred             CCEEEeecCCCcceEEEECCCCCcCCCCCcCccC
Confidence            9999999999999999999999999999999974

>PRK09504 sufA iron-sulfur cluster assembly scaffold protein; Provisional

Probab=100.00  E-value=3.7e-35  Score=222.81  Aligned_cols=109  Identities=31%  Similarity=0.594  Sum_probs=101.7

Q ss_pred             CCCceeeCHHHHHHHHHHHhcCCCCceEEEEEecCCCCCceeeEEEecccCCCCCCceeeeCCEEEEEcccccccccCcE
Q 030533           63 LKPAILLTEKALKHLSKMRSERSEDLCLRIGVKQGGCSGMSYTMEFENRANARPDDSVIEYDGFVIVCDPKSLLFLFGMQ  142 (175)
Q Consensus        63 ~~~~ItIT~~A~~~Lk~l~~~~~~~~~LRI~v~~~GCsG~~y~l~l~~~~~~~~~D~vie~~Gi~v~iD~~s~~~L~g~~  142 (175)
                      .+++|+|||+|+++|+++++++++..+|||+|+++||+|++|.|.++++.+  ++|.+++.+|++|+||+.++.||+|++
T Consensus        14 ~~~~I~iT~~A~~~i~~l~~~~~~~~~LRi~v~~gGCsG~~Y~~~l~~e~~--~~D~v~e~~g~~v~Id~~s~~~L~g~~   91 (122)
T PRK09504         14 AWQGLTLTPAAAAHIRELMAKQPGMKGVRLGVKQTGCAGFGYVLDSVSEPD--KDDLVFEHDGAKLFVPLQAMPFIDGTE   91 (122)
T ss_pred             CcCCEEECHHHHHHHHHHHhcCCCCceEEEEEECCCCCceEEEeeecCCCC--CCCEEEEeCCEEEEEcHHHHHhhCCcE
Confidence            458899999999999999987655568999999999999999999988765  899999999999999999999999999


Q ss_pred             EEeecCCCccceEEeCCCCCCCCCCCCCccc
Q 030533          143 LDYSDALIGGGFSFKNPNATQTCGCGKSFAA  173 (175)
Q Consensus       143 IDy~e~~~g~gF~~~nPn~~~~CGCG~SF~~  173 (175)
                      |||+++..++||+|+|||++++||||+||+.
T Consensus        92 IDy~~~~~~~gF~f~NPna~~~CgCG~SF~v  122 (122)
T PRK09504         92 VDYVREGLNQIFKFHNPKAQNECGCGESFGV  122 (122)
T ss_pred             EEeecCCCcceEEEECCCCCCCcCCCCCeeC
Confidence            9999999999999999999999999999973

>TIGR02011 IscA iron-sulfur cluster assembly protein IscA

Probab=100.00  E-value=5.7e-35  Score=216.01  Aligned_cols=105  Identities=45%  Similarity=0.808  Sum_probs=98.4

Q ss_pred             eeeCHHHHHHHHHHHhcCCCCceEEEEEecCCCCCceeeEEEecccCCCCCCceeeeCCEEEEEcccccccccCcEEEee
Q 030533           67 ILLTEKALKHLSKMRSERSEDLCLRIGVKQGGCSGMSYTMEFENRANARPDDSVIEYDGFVIVCDPKSLLFLFGMQLDYS  146 (175)
Q Consensus        67 ItIT~~A~~~Lk~l~~~~~~~~~LRI~v~~~GCsG~~y~l~l~~~~~~~~~D~vie~~Gi~v~iD~~s~~~L~g~~IDy~  146 (175)
                      |+||++|+++|++++++++++.+|||+++++||+|++|.|.|+++.+  ++|++++.+|++|+||+.++.||+|++|||+
T Consensus         1 I~iT~~A~~~i~~~~~~~~~~~~lRi~v~~~GCsG~~y~l~l~~~~~--~~D~v~~~~g~~v~id~~s~~~l~g~~IDy~   78 (105)
T TIGR02011         1 ITLTDSAAARVNTFLANRGKGFGLRLGVKTSGCSGMAYVLEFVDEPT--PDDIVFEDKGVKIVIDGKSLQYLDGTQLDFV   78 (105)
T ss_pred             CEECHHHHHHHHHHHhccCCCceEEEEEeCCCCCCEEEEeeecCCCC--CCCEEEEcCCEEEEEcHHHhHHhCCCEEEEe
Confidence            78999999999999987665678999999999999999999977654  8999999999999999999999999999999


Q ss_pred             cCCCccceEEeCCCCCCCCCCCCCccc
Q 030533          147 DALIGGGFSFKNPNATQTCGCGKSFAA  173 (175)
Q Consensus       147 e~~~g~gF~~~nPn~~~~CGCG~SF~~  173 (175)
                      ++..+++|+|+|||++++||||+||+.
T Consensus        79 ~~~~~~~F~~~nPna~~~CgCg~Sf~~  105 (105)
T TIGR02011        79 KEGLNEGFKFTNPNVKDECGCGESFHV  105 (105)
T ss_pred             cCCCcceEEEECCCCCccCCCCCCccC
Confidence            999999999999999999999999973

This clade is limited to the proteobacteria.

>TIGR01997 sufA_proteo FeS assembly scaffold SufA

Probab=100.00  E-value=8.9e-35  Score=215.64  Aligned_cols=106  Identities=40%  Similarity=0.826  Sum_probs=99.2

Q ss_pred             ceeeCHHHHHHHHHHHhcCCCCceEEEEEecCCCCCceeeEEEecccCCCCCCceeeeCCEEEEEcccccccccCcEEEe
Q 030533           66 AILLTEKALKHLSKMRSERSEDLCLRIGVKQGGCSGMSYTMEFENRANARPDDSVIEYDGFVIVCDPKSLLFLFGMQLDY  145 (175)
Q Consensus        66 ~ItIT~~A~~~Lk~l~~~~~~~~~LRI~v~~~GCsG~~y~l~l~~~~~~~~~D~vie~~Gi~v~iD~~s~~~L~g~~IDy  145 (175)
                      +|+|||+|+++|+++++++++..+|||+++++||+|++|.|.++++.+  ++|.+++.+|++|+||+.++.||+|++|||
T Consensus         2 ~i~iT~~A~~~i~~l~~~~~~~~~lRi~v~~~GC~G~~y~~~l~~~~~--~~D~v~~~~g~~v~id~~s~~~l~g~~IDy   79 (107)
T TIGR01997         2 VITLTDAAAIHIRELVAKRPEAVGIRLGVKKTGCAGMEYVLDLVSEPK--KDDDLIEHDGAKVFVAPEAVLFILGTQVDF   79 (107)
T ss_pred             eEEECHHHHHHHHHHHhcCCCCcEEEEEEECCCCCCcEEEeeecCCCC--CCCEEEecCCEEEEEcHHHHhhhCCCEEEE
Confidence            599999999999999987665678999999999999999999977654  899999999999999999999999999999


Q ss_pred             ecCCCccceEEeCCCCCCCCCCCCCccc
Q 030533          146 SDALIGGGFSFKNPNATQTCGCGKSFAA  173 (175)
Q Consensus       146 ~e~~~g~gF~~~nPn~~~~CGCG~SF~~  173 (175)
                      +++..+++|+|+|||+++.||||+||+.
T Consensus        80 ~~~~~~~~F~~~NPn~~~~CgCG~Sf~~  107 (107)
T TIGR01997        80 VRTTLRQGFKFNNPNATSACGCGESFEL  107 (107)
T ss_pred             EEcCCcceEEEECCCCCCccCCCCCccC
Confidence            9999999999999999999999999973

This model represents the SufA protein of the SUF system of iron-sulfur cluster biosynthesis. This system performs FeS biosynthesis even during oxidative stress and tends to be absent in obligate anaerobic and microaerophilic bacteria.

>KOG1120 consensus Fe-S cluster biosynthesis protein ISA1 (contains a HesB-like domain) [Inorganic ion transport and metabolism]

Probab=100.00  E-value=9.7e-34  Score=213.66  Aligned_cols=130  Identities=43%  Similarity=0.782  Sum_probs=118.0

Q ss_pred             cccccceeccCCCCCCCCCCCCCCCceeeCHHHHHHHHHHHhcCCCCceEEEEEecCCCCCceeeEEEecccCCCCCCce
Q 030533           41 SRRYSVSVRSSSTSAVAPATEDLKPAILLTEKALKHLSKMRSERSEDLCLRIGVKQGGCSGMSYTMEFENRANARPDDSV  120 (175)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~~~~~~~~~ItIT~~A~~~Lk~l~~~~~~~~~LRI~v~~~GCsG~~y~l~l~~~~~~~~~D~v  120 (175)
                      ++...++.+... +++++++...++.|++||.|+++|+++++++++...|||.|+..||+|++|.|.+.+.+.  ..|.+
T Consensus         5 ~~~~~~s~~~~~-~~a~~~~~~~k~~ltLTp~Av~~ik~ll~~~~e~~~lrigVk~rGCnGlsYtleY~~~kg--kfDE~   81 (134)
T KOG1120|consen    5 NRSNALSPRNAR-APAARKLAPRKAALTLTPSAVNHIKQLLSDKPEDVCLRIGVKQRGCNGLSYTLEYTKTKG--KFDEV   81 (134)
T ss_pred             cccccccccccc-ccccccccccccccccCHHHHHHHHHHHHhCCcCceeEEEEecCCcCcceeeeeeeccCC--CCcce
Confidence            344455555555 677778778889999999999999999999888899999999999999999999998875  68999


Q ss_pred             eeeCCEEEEEcccccccccCcEEEeecCCCccceEEeCCCCCCCCCCCCCccc
Q 030533          121 IEYDGFVIVCDPKSLLFLFGMQLDYSDALIGGGFSFKNPNATQTCGCGKSFAA  173 (175)
Q Consensus       121 ie~~Gi~v~iD~~s~~~L~g~~IDy~e~~~g~gF~~~nPn~~~~CGCG~SF~~  173 (175)
                      ++++|++|+||++++..+-|+++||+++..+++|+|.|||+++.||||+||+.
T Consensus        82 VeqdGv~I~ie~KA~l~liGteMDyvddkL~Sefvf~npna~gtcGcgeSf~~  134 (134)
T KOG1120|consen   82 VEQDGVRIFIEPKALLTLIGTEMDYVDDKLSSEFVFSNPNAKGTCGCGESFSV  134 (134)
T ss_pred             eeecCcEEEEcccceeeeccceehhhhhhhcCceEeeCCCccccccccccccC
Confidence            99999999999999999999999999999999999999999999999999974

>TIGR00049 Iron-sulfur cluster assembly accessory protein

Probab=100.00  E-value=1.9e-32  Score=201.40  Aligned_cols=104  Identities=50%  Similarity=0.946  Sum_probs=96.7

Q ss_pred             eeCHHHHHHHHHHHhcCC-CCceEEEEEecCCCCCceeeEEEecccCCCCCCceeeeCCEEEEEcccccccccCcEEEee
Q 030533           68 LLTEKALKHLSKMRSERS-EDLCLRIGVKQGGCSGMSYTMEFENRANARPDDSVIEYDGFVIVCDPKSLLFLFGMQLDYS  146 (175)
Q Consensus        68 tIT~~A~~~Lk~l~~~~~-~~~~LRI~v~~~GCsG~~y~l~l~~~~~~~~~D~vie~~Gi~v~iD~~s~~~L~g~~IDy~  146 (175)
                      +||++|+++|++++++++ ++.+|||+++.+||+|++|.|.+++..+  ++|++++.+|++|+||+.+++||+|++|||+
T Consensus         1 ~iT~~A~~~l~~~~~~~~~~~~~lRi~~~~~Gc~G~~~~l~l~~~~~--~~D~~~~~~gi~~~id~~~~~~l~~~~IDy~   78 (105)
T TIGR00049         1 TLTDSAAKRIKALLAGEGEPNLGLRVGVKGGGCSGLQYGLEFDDEPN--EDDEVFEQDGVKVVVDPKSLPYLDGSEIDYV   78 (105)
T ss_pred             CcCHHHHHHHHHHHhcCCCCceEEEEEEecCCCCCeEEEEeecCCCC--CCCEEEEcCCEEEEEeHHHHhhhCCCEEEEe
Confidence            589999999999998765 3468999999999999999999997654  7899999999999999999999999999999


Q ss_pred             cCCCccceEEeCCCCCCCCCCCCCccc
Q 030533          147 DALIGGGFSFKNPNATQTCGCGKSFAA  173 (175)
Q Consensus       147 e~~~g~gF~~~nPn~~~~CGCG~SF~~  173 (175)
                      ++..+++|+|+|||+++.||||+||+.
T Consensus        79 ~~~~~~~f~i~nPn~~~~c~cg~sf~~  105 (105)
T TIGR00049        79 EELLGSGFTFTNPNAKGTCGCGKSFSV  105 (105)
T ss_pred             ecCCcceEEEECCCCCccCCCCcCccC
Confidence            999999999999999999999999973

Proteins in this subfamily appear to be associated with the process of FeS-cluster assembly. The HesB proteins are associated with the nif gene cluster and the Rhizobium gene IscN has been shown to be required for nitrogen fixation. Nitrogenase includes multiple FeS clusters and many genes for their assembly. The E. coli SufA protein is associated with SufS, a NifS homolog and SufD which are involved in the FeS cluster assembly of the FhnF protein. The Azotobacter protein IscA (homologs of which are also found in E.coli) is associated which IscS, another NifS homolog and IscU, a nifU homolog as well as other factors consistent with a role in FeS cluster chemistry. A homolog from Geobacter contains a selenocysteine in place of an otherwise invariant cysteine, further suggesting a role in redox chemistry.

>KOG1119 consensus Mitochondrial Fe-S cluster biosynthesis protein ISA2 (contains a HesB-like domain) [Energy production and conversion; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.94  E-value=4.4e-27  Score=187.34  Aligned_cols=108  Identities=35%  Similarity=0.646  Sum_probs=101.3

Q ss_pred             CCceeeCHHHHHHHHHHHhcCCCCceEEEEEecCCCCCceeeEEEecccCCCCCCceeeeCCEEEEEcccccccccCcEE
Q 030533           64 KPAILLTEKALKHLSKMRSERSEDLCLRIGVKQGGCSGMSYTMEFENRANARPDDSVIEYDGFVIVCDPKSLLFLFGMQL  143 (175)
Q Consensus        64 ~~~ItIT~~A~~~Lk~l~~~~~~~~~LRI~v~~~GCsG~~y~l~l~~~~~~~~~D~vie~~Gi~v~iD~~s~~~L~g~~I  143 (175)
                      .-.++|+|.|.++|+|+....+  ..|||.|++|||+||+|.+.+|...+  ++|.+++.+|.+|+||..++.|++|.+|
T Consensus        91 ~~~~~lsds~~krl~EI~~~~p--e~LRl~VegGGCsGFQYkf~LD~~in--~dD~vf~e~~arVVvD~~SL~~~kGatv  166 (199)
T KOG1119|consen   91 GFNLHLSDSCSKRLKEIYENSP--EFLRLTVEGGGCSGFQYKFRLDNKIN--NDDRVFVENGARVVVDNVSLNLLKGATV  166 (199)
T ss_pred             CceEEehhHHHHHHHHHHhCCc--ceEEEEEecCCccceEEEEEecCCCC--CcceEEeeCCcEEEEeccchhhccCcee
Confidence            3469999999999999988765  57999999999999999999999876  8999999999999999999999999999


Q ss_pred             EeecCCCccceEE-eCCCCCCCCCCCCCccccC
Q 030533          144 DYSDALIGGGFSF-KNPNATQTCGCGKSFAAEM  175 (175)
Q Consensus       144 Dy~e~~~g~gF~~-~nPn~~~~CGCG~SF~~~~  175 (175)
                      ||.+++++++|.+ .||.++++||||+||.+||
T Consensus       167 dy~~ELIrSsF~ivnNP~A~~gCsCgSSF~ikl  199 (199)
T KOG1119|consen  167 DYTNELIRSSFRIVNNPSAKQGCSCGSSFDIKL  199 (199)
T ss_pred             ehHHHHhhhhheeecCcccccCCCCCcccccCC
Confidence            9999999999999 6799999999999999986

>PRK11190 Fe/S biogenesis protein NfuA; Provisional

Probab=99.93  E-value=9.3e-26  Score=183.27  Aligned_cols=96  Identities=23%  Similarity=0.427  Sum_probs=88.4

Q ss_pred             ceeeCHHHHHHHHHHHhcCCCCceEEEEEecCCCCCceeeEEE--ecccCCCCCCceeeeCCEEEEEcccccccccCcEE
Q 030533           66 AILLTEKALKHLSKMRSERSEDLCLRIGVKQGGCSGMSYTMEF--ENRANARPDDSVIEYDGFVIVCDPKSLLFLFGMQL  143 (175)
Q Consensus        66 ~ItIT~~A~~~Lk~l~~~~~~~~~LRI~v~~~GCsG~~y~l~l--~~~~~~~~~D~vie~~Gi~v~iD~~s~~~L~g~~I  143 (175)
                      ||+|||+|+++|++++++++++.+|||+|+++||+|++|+|.|  ++..  .++|.+++.+|++|+||+.++.||+|++|
T Consensus         1 ~i~iTd~A~~~i~~ll~~~~~~~~LRI~V~~gGCsG~~Y~~~~~~~~~~--~~~D~v~e~~gv~v~Vd~~S~~~L~G~~I   78 (192)
T PRK11190          1 MITISDAAQAHFAKLLANQEEGTQIRVFVINPGTPNAECGVSYCPPDAV--EATDTELKFDGFSAYVDELSAPFLEDAEI   78 (192)
T ss_pred             CcEECHHHHHHHHHHHhcCCCCceEEEEEECCCcCCceeeeEEeecCCC--CCCCEEEEeCCEEEEECcchHhHhCCCEE
Confidence            5899999999999999876555689999999999999999999  4444  37999999999999999999999999999


Q ss_pred             EeecCCCccceEEeCCCCCC
Q 030533          144 DYSDALIGGGFSFKNPNATQ  163 (175)
Q Consensus       144 Dy~e~~~g~gF~~~nPn~~~  163 (175)
                      ||+++..+++|+|+|||++.
T Consensus        79 Dyve~~~g~gF~f~NPNa~~   98 (192)
T PRK11190         79 DFVTDQLGSQLTLKAPNAKM   98 (192)
T ss_pred             EEeecCCCCceEEECCCCCC
Confidence            99999999999999999975

>TIGR01911 HesB_rel_seleno HesB-like selenoprotein

Probab=99.92  E-value=2.8e-25  Score=161.16  Aligned_cols=90  Identities=16%  Similarity=0.346  Sum_probs=82.5

Q ss_pred             CceeeCHHHHHHHHHHHhcCCC-CceEEEEEecCCCCCceeeEEEecccCCCCCCceeeeCCEEEEEcccccccccCcEE
Q 030533           65 PAILLTEKALKHLSKMRSERSE-DLCLRIGVKQGGCSGMSYTMEFENRANARPDDSVIEYDGFVIVCDPKSLLFLFGMQL  143 (175)
Q Consensus        65 ~~ItIT~~A~~~Lk~l~~~~~~-~~~LRI~v~~~GCsG~~y~l~l~~~~~~~~~D~vie~~Gi~v~iD~~s~~~L~g~~I  143 (175)
                      -+|+|||+|+++|++++++++. ..+|||+|+++||+|++|.|.++++ +  ++|.+++.+|++|+||+.++.||.|++|
T Consensus         2 ~~i~lT~~A~~~i~~ll~~~~~~~~~LRi~v~~gGCsG~~Y~~~ld~~-~--~~D~v~~~~gv~v~vD~~s~~~l~G~~i   78 (92)
T TIGR01911         2 KIVAMSDDAYEEFKDFLKENDIDNDVIRIHFAGMGCMGPMFNLIADEE-K--EGDEIEKIHDLTFLIDKNLIDQFGGFSI   78 (92)
T ss_pred             CceEECHHHHHHHHHHHHhCCCCCceEEEEEeCCCccCcccceEecCC-C--CCCEEEEeCCEEEEECHHHHHHhCCCEE
Confidence            3699999999999999977643 3579999999999999999999875 3  7999999999999999999999999999


Q ss_pred             EeecCCCccceEEe
Q 030533          144 DYSDALIGGGFSFK  157 (175)
Q Consensus       144 Dy~e~~~g~gF~~~  157 (175)
                      ||+++..+++|+|+
T Consensus        79 Dy~~~~~g~gF~~~   92 (92)
T TIGR01911        79 ECAEENFGAGFSLD   92 (92)
T ss_pred             EEecCCCCCcEEeC
Confidence            99999999999984

This model represents a family of small proteins related to HesB and its close homologs, which are likely to be invovlved in iron-sulfur cluster assembly (See TIGR00049 and pfam01521). Several members are selenoproteins, with a TGA codon and Sec residue that aligns to the conserved Cys of the HesB domain. A variable Cys/Ser/Gly-rich C-terminal region is not included in the seed alignment and model.

>TIGR03341 YhgI_GntY IscR-regulated protein YhgI

Probab=99.92  E-value=8.5e-25  Score=177.40  Aligned_cols=97  Identities=27%  Similarity=0.411  Sum_probs=87.1

Q ss_pred             eeeCHHHHHHHHHHHhcCCCCceEEEEEecCCCCCceeeEEEecccCCCCCCceeeeCCEEEEEcccccccccCcEEEee
Q 030533           67 ILLTEKALKHLSKMRSERSEDLCLRIGVKQGGCSGMSYTMEFENRANARPDDSVIEYDGFVIVCDPKSLLFLFGMQLDYS  146 (175)
Q Consensus        67 ItIT~~A~~~Lk~l~~~~~~~~~LRI~v~~~GCsG~~y~l~l~~~~~~~~~D~vie~~Gi~v~iD~~s~~~L~g~~IDy~  146 (175)
                      |+||++|+++|++++++++++.+|||+|+++||+|++|+|.|....+.+++|.+++.+|++|+||+.++.||+|++|||+
T Consensus         1 I~IT~~A~~~l~~ll~~~~~~~~LRv~V~~gGCsG~~Y~l~~~~~~~~~~~D~v~e~~g~~v~Vd~~s~~~L~g~~IDyv   80 (190)
T TIGR03341         1 ITITEAAQAYLAKLLAKQNEGTGIRVFVVNPGTPYAECCVSYCPPDEVEPSDIKLEFNGFSAYVDALSAPFLEDAVIDFV   80 (190)
T ss_pred             CEECHHHHHHHHHHHhhCCCCceEEEEEECCccCCceeeeEEcccCCCCCCCEEEEeCCEEEEEccchhhHhCCCEEEEe
Confidence            68999999999999987655568999999999999999999942222348999999999999999999999999999999


Q ss_pred             cCCCccceEEeCCCCCC
Q 030533          147 DALIGGGFSFKNPNATQ  163 (175)
Q Consensus       147 e~~~g~gF~~~nPn~~~  163 (175)
                      ++..+++|+|+|||++.
T Consensus        81 e~~~g~gF~f~NPna~~   97 (190)
T TIGR03341        81 TDRMGGQLTLKAPNAKM   97 (190)
T ss_pred             ecCCCceeEEeCCccCC
Confidence            99999999999999864

IscR (TIGR02010) is an iron-sulfur cluster-binding transcriptional regulator (see Genome Property GenProp0138). Members of this protein family include YhgI, whose expression is under control of IscR, and show sequence similarity to IscA, a known protein of iron-sulfur cluster biosynthesis. These two lines of evidence strongly suggest a role as an iron-sulfur cluster biosynthesis protein. An older study designated this protein GntY and suggested a role for it and for the product of an adjacent gene, based on complementation studies, in gluconate utilization.

>PF01521 Fe-S_biosyn: Iron-sulphur cluster biosynthesis; InterPro: IPR000361 The proteins in this entry are variously annotated as iron-sulphur cluster insertion protein or Fe/S biogenesis protein

Probab=99.90  E-value=7.7e-24  Score=156.89  Aligned_cols=102  Identities=38%  Similarity=0.713  Sum_probs=92.7

Q ss_pred             CceeeCHHHHHHHHHHHhcCCCCceEEEEEecCC--------CC-CceeeEEEecccCCCCCCceeeeCCEEEEEccccc
Q 030533           65 PAILLTEKALKHLSKMRSERSEDLCLRIGVKQGG--------CS-GMSYTMEFENRANARPDDSVIEYDGFVIVCDPKSL  135 (175)
Q Consensus        65 ~~ItIT~~A~~~Lk~l~~~~~~~~~LRI~v~~~G--------Cs-G~~y~l~l~~~~~~~~~D~vie~~Gi~v~iD~~s~  135 (175)
                      |.|+||++|+++|++++.+++..  |||+++.+|        |+ |++|.|.+++..+ .+.|.+++.+|++|+|++.+.
T Consensus         1 M~I~iT~~A~~~l~~~~~~~~~~--irl~~~~gg~p~~~~~~C~~g~~y~l~~~~~~~-~~~D~~~~~~~~~i~i~~~~~   77 (112)
T PF01521_consen    1 MKITITDAAAERLKQLLKEDPKK--IRLFVDDGGSPYSREGCCSIGFSYSLALVDKPD-EEYDIVIESNGFTIYIDKYSL   77 (112)
T ss_dssp             -EEEE-HHHHHHHHHHHHCTTES--EEEEEEEESSCCGGSS-TTSEEEEEEEEESSTS-TTSCEEEEETTEEEEEEGGGH
T ss_pred             CEEEECHHHHHHHHHHHhcCCCE--EEEEEECCCcccccCCCCCCCcEEeEEEeeccc-ccceEEEeeeEEEEEEeccHh
Confidence            68999999999999999987543  999999999        99 9999999998762 279999999999999999999


Q ss_pred             ccc-cCcEEEeecCCCccceEEeCCCCCCCCCCCC
Q 030533          136 LFL-FGMQLDYSDALIGGGFSFKNPNATQTCGCGK  169 (175)
Q Consensus       136 ~~L-~g~~IDy~e~~~g~gF~~~nPn~~~~CGCG~  169 (175)
                      +|| ++++|||.++..+.+|++.||+....|+||+
T Consensus        78 ~~l~~~~~iD~~~~~~~~~f~~~~~~~~~~~~~~~  112 (112)
T PF01521_consen   78 WYLDEGLTIDYVEDLGGFGFKSDNPNLDSNCGCGD  112 (112)
T ss_dssp             HHH-TTEEEEEEEETTEEEEEEETTTEEEEECECE
T ss_pred             hhhhCCCEEEEEEccCccEEEECCCCcCceeccCC
Confidence            999 9999999999999999999999999999984

They appear to be involved in Fe-S cluster biogenesis. This family includes IscA, HesB, YadR and YfhF-like proteins. The hesB gene is expressed only under nitrogen fixation conditions []. IscA, an 11 kDa member of the hesB family of proteins, binds iron and [2Fe-2S] clusters, and participates in the biosynthesis of iron-sulphur proteins. IscA is able to bind at least 2 iron ions per dimer []. Other members of this family include various hypothetical proteins that also contain the NifU-like domain (IPR001075 from INTERPRO) suggesting that they too are able to bind iron and are involved in Fe-S cluster biogenesis. The HesB family are found in species as divergent as Homo sapiens (Human) and Haemophilus influenzae suggesting that these proteins are involved in basic cellular functions []. ; PDB: 2D2A_A 1X0G_D 1NWB_A 2K4Z_A 1R94_B 1R95_A 1S98_B 2P2E_A 2QGO_A 2APN_A.

>COG4841 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=99.65  E-value=6.6e-16  Score=110.27  Aligned_cols=88  Identities=28%  Similarity=0.379  Sum_probs=74.1

Q ss_pred             CceeeCHHHHHHHHHHHhcCCCCceEEEEEecCCCC----CceeeEEEecccCCCCCCceeeeCCEEEEEcccccccccC
Q 030533           65 PAILLTEKALKHLSKMRSERSEDLCLRIGVKQGGCS----GMSYTMEFENRANARPDDSVIEYDGFVIVCDPKSLLFLFG  140 (175)
Q Consensus        65 ~~ItIT~~A~~~Lk~l~~~~~~~~~LRI~v~~~GCs----G~~y~l~l~~~~~~~~~D~vie~~Gi~v~iD~~s~~~L~g  140 (175)
                      |+|+||+.|++|+++.+.-.. +..||++++.|||+    ||+.++..+.+.   |--...+++|++|+|+.+++||+++
T Consensus         1 Mni~vtd~A~~wfk~E~~l~~-g~~vrffvRyGG~~~~~~GFS~gv~~e~Pk---E~g~~q~~Dgltffiee~DlWYF~d   76 (95)
T COG4841           1 MNIEVTDQALKWFKEELDLEE-GNKVRFFVRYGGCSSLQQGFSLGVAKEVPK---EIGYKQEYDGLTFFIEEKDLWYFDD   76 (95)
T ss_pred             CceEEcHHHHHHHHHhcCCCC-CCEEEEEEEEcCcccccCCcceeeeccCch---hhchheeecCeEEEEecCceEEEcC
Confidence            689999999999999987764 45799999999999    677666666554   3344557999999999999999999


Q ss_pred             --cEEEeecCCCccceEE
Q 030533          141 --MQLDYSDALIGGGFSF  156 (175)
Q Consensus       141 --~~IDy~e~~~g~gF~~  156 (175)
                        ++|||.++.....|+.
T Consensus        77 ~d~~v~y~~~~Dei~fs~   94 (95)
T COG4841          77 HDLKVDYSPDTDEISFSY   94 (95)
T ss_pred             CcEEEeccCCCCcceeec
Confidence              9999999988887765

>COG4918 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=98.73  E-value=5e-08  Score=71.74  Aligned_cols=83  Identities=20%  Similarity=0.171  Sum_probs=65.9

Q ss_pred             CceeeCHHHHHHHHHHHhcC-CCCceEEEEEecCCCCC-ceeeEEEecccCCCCCCceeeeCCEEEEEcccccccccC-c
Q 030533           65 PAILLTEKALKHLSKMRSER-SEDLCLRIGVKQGGCSG-MSYTMEFENRANARPDDSVIEYDGFVIVCDPKSLLFLFG-M  141 (175)
Q Consensus        65 ~~ItIT~~A~~~Lk~l~~~~-~~~~~LRI~v~~~GCsG-~~y~l~l~~~~~~~~~D~vie~~Gi~v~iD~~s~~~L~g-~  141 (175)
                      |+|++|++|+++|+.....+ ..+..+|+..++.||.| =-+.+.++++..  ..|..++.|+.+|+|-.....||++ +
T Consensus         1 M~Itftd~a~~~l~~a~d~nl~~~~hl~ydtEgc~Ca~SGi~t~rlvae~t--g~d~~idsn~gPiyik~~~~~Ff~D~m   78 (114)
T COG4918           1 MKITFTDKAADKLKAAGDVNLVFDDHLLYDTEGCACAGSGISTYRLVAEET--GFDASIDSNFGPIYIKDYGSYFFQDEM   78 (114)
T ss_pred             CeEEecHHHHHHHHHhhccCcCccceEEEeccccccccCCcceEEEEEecc--CcccccccCCCcEEEEecceeEeccee
Confidence            68999999999999877654 34567888888888874 224666666554  5788999999999999998888886 9


Q ss_pred             EEEeecCC
Q 030533          142 QLDYSDAL  149 (175)
Q Consensus       142 ~IDy~e~~  149 (175)
                      +|||.+..
T Consensus        79 tidyN~~~   86 (114)
T COG4918          79 TIDYNPSY   86 (114)
T ss_pred             eeecCCcc
Confidence            99998764

>COG3564 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.64  E-value=0.00046  Score=50.75  Aligned_cols=93  Identities=23%  Similarity=0.354  Sum_probs=63.6

Q ss_pred             CCCceeeCHHHHHHHHHHHhcCCCCceEEEEEecCCCC-CceeeEEEecc-cCCCCCCcee-eeCCEEEEEccccccccc
Q 030533           63 LKPAILLTEKALKHLSKMRSERSEDLCLRIGVKQGGCS-GMSYTMEFENR-ANARPDDSVI-EYDGFVIVCDPKSLLFLF  139 (175)
Q Consensus        63 ~~~~ItIT~~A~~~Lk~l~~~~~~~~~LRI~v~~~GCs-G~~y~l~l~~~-~~~~~~D~vi-e~~Gi~v~iD~~s~~~L~  139 (175)
                      +...++.|++|++-|.++..+.++   | +|-..+||. |-+ -|-+-.. .-..+.|+.+ +.+|++|||...+..+-+
T Consensus         3 ~~~~V~aT~aAl~Li~~l~~~hgp---v-mFHQSGGCCDGSs-PMCYP~~~fivGd~DvlLG~i~gvPvyIs~~QyeaWK   77 (116)
T COG3564           3 MPARVLATPAALDLIAELQAEHGP---V-MFHQSGGCCDGSS-PMCYPRADFIVGDNDVLLGEIDGVPVYISGPQYEAWK   77 (116)
T ss_pred             CCcceecCHHHHHHHHHHHHhcCC---E-EEeccCCccCCCC-CccccccceeecCCceEEeeeCCEEEEecCcHHhhhh
Confidence            345689999999999999988753   2 444567776 321 2222111 0011456655 799999999999988877


Q ss_pred             C--cEEEeecCCCccceEEeCCCC
Q 030533          140 G--MQLDYSDALIGGGFSFKNPNA  161 (175)
Q Consensus       140 g--~~IDy~e~~~g~gF~~~nPn~  161 (175)
                      .  +.||.+.. .|+.|.++|-..
T Consensus        78 HTqLIIDVVpG-RGGmFSLdng~E  100 (116)
T COG3564          78 HTQLIIDVVPG-RGGMFSLDNGRE  100 (116)
T ss_pred             ccEEEEEEecC-CCceeEccCCcc
Confidence            5  88999865 478899987443

>PF05610 DUF779: Protein of unknown function (DUF779); InterPro: IPR008497 This family consists of several bacterial proteins of unknown function

Probab=96.48  E-value=0.019  Score=41.95  Aligned_cols=81  Identities=20%  Similarity=0.417  Sum_probs=53.8

Q ss_pred             HHHHHhcCCCCceEEEEEecCCCCCceeeEEEeccc-CCCCCCcee-eeCCEEEEEcccccccccC--cEEEeecCCCcc
Q 030533           77 LSKMRSERSEDLCLRIGVKQGGCSGMSYTMEFENRA-NARPDDSVI-EYDGFVIVCDPKSLLFLFG--MQLDYSDALIGG  152 (175)
Q Consensus        77 Lk~l~~~~~~~~~LRI~v~~~GCsG~~y~l~l~~~~-~~~~~D~vi-e~~Gi~v~iD~~s~~~L~g--~~IDy~e~~~g~  152 (175)
                      |+++.++.+ +  | ++-..+||..-+-=|-+.... .+.+.|+.+ +..|++|+|.+++..|.+.  ++||.++. .|.
T Consensus         3 i~~L~~~HG-~--l-mFhQSGGCCDGSaPmC~p~gef~~g~~DV~LG~i~g~~fym~~~qfeywkht~L~iDVv~G-rG~   77 (95)
T PF05610_consen    3 IRRLKAKHG-P--L-MFHQSGGCCDGSAPMCYPAGEFRVGDSDVLLGEIGGVPFYMSKDQFEYWKHTQLTIDVVPG-RGG   77 (95)
T ss_pred             HHHHHHhcC-C--E-EEEeCCCCCCCCcceeEeCCceecCCCcEEEEEecCeEEEEchHHHHHhhCcEEEEEEEec-CCC
Confidence            445555543 2  3 344567877222233332221 123567665 8999999999999999987  89999874 578


Q ss_pred             ceEEeCCCCC
Q 030533          153 GFSFKNPNAT  162 (175)
Q Consensus       153 gF~~~nPn~~  162 (175)
                      +|.+++|..+
T Consensus        78 ~FSLE~~~G~   87 (95)
T PF05610_consen   78 GFSLEAPEGK   87 (95)
T ss_pred             eeeccCCCCc
Confidence            9999999753

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	175
1nwb_A	124	Solution Nmr Structure Of Protein Aq_1857 From Aqui		4e-20
1r94_A	118	Crystal Structure Of Isca (mercury Derivative) Leng		6e-18
1s98_A	107	E.Coli Isca Crystal Structure To 2.3 A Length = 107		1e-17
2apn_A	114	Hi1723 Solution Structure Length = 114		2e-17
1x0g_A	112	Crystal Structure Of Isca With The [2fe-2s] Cluster		1e-11
2d2a_A	145	Crystal Structure Of Escherichia Coli Sufa Involved		3e-11

>pdb|1NWB|A Chain A, Solution Nmr Structure Of Protein Aq_1857 From Aquifex Aeolicus: Northeast Structural Genomics Consortium Target Qr6 Length = 124

Iteration: 1
 Score = 94.0 bits (232), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 47/105 (44%), Positives = 67/105 (63%), Gaps = 3/105 (2%)
Query: 69  LTEKALKHLSKMRSERS-EDLCLRIGVKQGGCSGMSYTMEFENRANARPDDSVIEYDGFV 127
           +T+KA++ + K+  E + E+  LRI V  GGCSG  Y M F++       D V EYDG  
Sbjct: 12  VTDKAVEEIKKVAQENNIENPILRIRVVPGGCSGFQYAMGFDD--TVEEGDHVFEYDGVK 69
Query: 128 IVCDPKSLLFLFGMQLDYSDALIGGGFSFKNPNATQTCGCGKSFA 172
           +V DP S+ ++ G +LDY    +GGGF+ +NPNAT +CGCG SF+
Sbjct: 70  VVIDPFSMPYVNGAELDYVVDFMGGGFTIRNPNATGSCGCGSSFS 114

>pdb|1R94|A Chain A, Crystal Structure Of Isca (mercury Derivative) Length = 118

Iteration: 1
 Score = 86.7 bits (213), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 44/106 (41%), Positives = 61/106 (57%), Gaps = 2/106 (1%)
Query: 66  AILLTEKALKHLSKMRSERSEDLCLRIGVKQGGCSGMSYTMEFENRANARPDDSVIEYDG 125
           +I L++ A   ++   + R +   LR+GV+  GCSGM+Y +EF +     P+D V E  G
Sbjct: 2   SITLSDSAAARVNTFLANRGKGFGLRLGVRTSGCSGMAYVLEFVDEPT--PEDIVFEDKG 59
Query: 126 FVIVCDPKSLLFLFGMQLDYSDALIGGGFSFKNPNATQTCGCGKSF 171
             +V D KSL FL G QLD+    +  GF F NPN    CGCG+SF
Sbjct: 60  VKVVVDGKSLQFLDGTQLDFVKEGLNEGFKFTNPNVKDECGCGESF 105

>pdb|1S98|A Chain A, E.Coli Isca Crystal Structure To 2.3 A Length = 107

Iteration: 1
 Score = 85.9 bits (211), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 43/106 (40%), Positives = 61/106 (57%), Gaps = 2/106 (1%)
Query: 66  AILLTEKALKHLSKMRSERSEDLCLRIGVKQGGCSGMSYTMEFENRANARPDDSVIEYDG 125
           +I L++ A   ++   + R +   LR+GV+  GCSGM+Y +EF +     P+D V E  G
Sbjct: 2   SITLSDSAAARVNTFLANRGKGFGLRLGVRTSGCSGMAYVLEFVDEPT--PEDIVFEDKG 59
Query: 126 FVIVCDPKSLLFLFGMQLDYSDALIGGGFSFKNPNATQTCGCGKSF 171
             +V D KS+ FL G QLD+    +  GF F NPN    CGCG+SF
Sbjct: 60  VKVVVDGKSMQFLDGTQLDFVKEGLNEGFKFTNPNVKDECGCGESF 105

>pdb|2APN|A Chain A, Hi1723 Solution Structure Length = 114

Iteration: 1
 Score = 85.5 bits (210), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 45/113 (39%), Positives = 63/113 (55%), Gaps = 3/113 (2%)
Query: 61  EDLKPAILLTEKALKHLSKMRSER-SEDLCLRIGVKQGGCSGMSYTMEFENRANARPDDS 119
           +D+   +  T+ A   +  + SE  + DL LR+ +  GGCSG  Y   F+ + N    D 
Sbjct: 3   DDMAVPLTFTDAAANKVKSLISEEENTDLKLRVYITGGGCSGFQYGFTFDEKVN--DGDL 60
Query: 120 VIEYDGFVIVCDPKSLLFLFGMQLDYSDALIGGGFSFKNPNATQTCGCGKSFA 172
            IE  G  +V DP SL +L G  +DY++ L G  F+  NPNAT TCGCG SF+
Sbjct: 61  TIEKSGVQLVIDPMSLQYLIGGTVDYTEGLEGSRFTVNNPNATSTCGCGSSFS 113

>pdb|1X0G|A Chain A, Crystal Structure Of Isca With The [2fe-2s] Cluster Length = 112

Iteration: 1
 Score = 65.5 bits (158), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 36/108 (33%), Positives = 59/108 (54%), Gaps = 5/108 (4%)
Query: 67  ILLTEKALKHLSKMRSE---RSEDLCLRIGVKQGGCSGMSYTMEFENRANARPDDSVIEY 123
           + LT  A++ L ++++    R +   LRI V+   C    Y +     A  +P D + + 
Sbjct: 2   VELTPAAIQELERLQTHGVRRGQAAILRIQVQPSECGDWRYDLALV--AEPKPTDLLTQS 59
Query: 124 DGFVIVCDPKSLLFLFGMQLDYSDALIGGGFSFKNPNATQTCGCGKSF 171
            G+ I    ++   L G+++DY + L+GG F F NPNA+QTCGCG +F
Sbjct: 60  QGWTIAIAAEAAELLRGLRVDYIEDLMGGAFRFHNPNASQTCGCGMAF 107

>pdb|2D2A|A Chain A, Crystal Structure Of Escherichia Coli Sufa Involved In Biosynthesis Of Iron-Sulfur Clusters Length = 145

Iteration: 1
 Score = 64.3 bits (155), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 32/108 (29%), Positives = 59/108 (54%), Gaps = 2/108 (1%)
Query: 66  AILLTEKALKHLSKMRSERSEDLCLRIGVKQGGCSGMSYTMEFENRANARPDDSVIEYDG 125
            + LT  A  H+ ++ +++   + +R+GVKQ GC+G  Y ++  + +    DD + E+DG
Sbjct: 40  GLTLTPAAAIHIRELVAKQPGMVGVRLGVKQTGCAGFGYVLD--SVSEPDKDDLLFEHDG 97
Query: 126 FVIVCDPKSLLFLFGMQLDYSDALIGGGFSFKNPNATQTCGCGKSFAA 173
             +    +++ F+ G ++D+    +   F F NP A   CGCG+SF  
Sbjct: 98  AKLFVPLQAMPFIDGTEVDFVREGLNQIFKFHNPKAQNECGCGESFGV 145

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	175
1r94_A	118	Protein YFHF; tetrameric, beta barrel, iron-sulfur	5e-55
2d2a_A	145	SUFA protein; iron-sulfur cluster, iron, ISCA, YAD	3e-53
1nwb_A	124	Hypothetical protein AQ_1857; QR6, structural geno	3e-52
1x0g_A	112	ISCA; [2Fe-2S], biosynthesis, cyanobacteria, domai	5e-52
2apn_A	114	Protein HI1723; HI1723 solution structure, structu	1e-46
2k4z_A	125	DSRR; ISCA/SUFA/HESB like fold, structural genomic	6e-37

>1r94_A Protein YFHF; tetrameric, beta barrel, iron-sulfur cluster protein, pseudo-symmetric motifs, metal transport; 2.30A {Escherichia coli} SCOP: b.124.1.1 PDB: 1r95_A 1s98_A Length = 118

 Score =  168 bits (429), Expect = 5e-55
 Identities = 44/107 (41%), Positives = 61/107 (57%), Gaps = 2/107 (1%)

Query: 66  AILLTEKALKHLSKMRSERSEDLCLRIGVKQGGCSGMSYTMEFENRANARPDDSVIEYDG 125
           +I L++ A   ++   + R +   LR+GV+  GCSGM+Y +EF +     P+D V E  G
Sbjct: 2   SITLSDSAAARVNTFLANRGKGFGLRLGVRTSGCSGMAYVLEFVDEPT--PEDIVFEDKG 59

Query: 126 FVIVCDPKSLLFLFGMQLDYSDALIGGGFSFKNPNATQTCGCGKSFA 172
             +V D KSL FL G QLD+    +  GF F NPN    CGCG+SF 
Sbjct: 60  VKVVVDGKSLQFLDGTQLDFVKEGLNEGFKFTNPNVKDECGCGESFK 106

>2d2a_A SUFA protein; iron-sulfur cluster, iron, ISCA, YADR, metal transport; 2.70A {Escherichia coli} Length = 145

 Score =  165 bits (419), Expect = 3e-53
 Identities = 33/135 (24%), Positives = 63/135 (46%), Gaps = 2/135 (1%)

Query: 37  KLNLSRRYSVSVRSSSTSAVAPATEDLKPAILLTEKALKHLSKMRSERSEDLCLRIGVKQ 96
             +        +     S      +     + LT  A  H+ ++ +++   + +R+GVKQ
Sbjct: 11  HHSSGHIDDDDLHMDMHSGTFNPQDFAWQGLTLTPAAAIHIRELVAKQPGMVGVRLGVKQ 70

Query: 97  GGCSGMSYTMEFENRANARPDDSVIEYDGFVIVCDPKSLLFLFGMQLDYSDALIGGGFSF 156
            GC+G  Y ++  +  +   DD + E+DG  +    +++ F+ G ++D+    +   F F
Sbjct: 71  TGCAGFGYVLDSVSEPD--KDDLLFEHDGAKLFVPLQAMPFIDGTEVDFVREGLNQIFKF 128

Query: 157 KNPNATQTCGCGKSF 171
            NP A   CGCG+SF
Sbjct: 129 HNPKAQNECGCGESF 143

>1nwb_A Hypothetical protein AQ_1857; QR6, structural genomics, protein structure initiative, NESG, reduced dimensionality PSI; NMR {Aquifex aeolicus} SCOP: b.124.1.1 Length = 124

 Score =  161 bits (410), Expect = 3e-52
 Identities = 46/108 (42%), Positives = 65/108 (60%), Gaps = 3/108 (2%)

Query: 67  ILLTEKALKHLSK-MRSERSEDLCLRIGVKQGGCSGMSYTMEFENRANARPDDSVIEYDG 125
             +T+KA++ + K  +    E+  LRI V  GGCSG  Y M F++       D V EYDG
Sbjct: 10  FKVTDKAVEEIKKVAQENNIENPILRIRVVPGGCSGFQYAMGFDDTVE--EGDHVFEYDG 67

Query: 126 FVIVCDPKSLLFLFGMQLDYSDALIGGGFSFKNPNATQTCGCGKSFAA 173
             +V DP S+ ++ G +LDY    +GGGF+ +NPNAT +CGCG SF+ 
Sbjct: 68  VKVVIDPFSMPYVNGAELDYVVDFMGGGFTIRNPNATGSCGCGSSFSC 115

>1x0g_A ISCA; [2Fe-2S], biosynthesis, cyanobacteria, domain swapping, Fe- S cluster, iron, iron-sulfur cluster protein, scaffold, sulfur; 2.50A {Thermosynechococcus elongatus} Length = 112

 Score =  160 bits (408), Expect = 5e-52
 Identities = 35/109 (32%), Positives = 57/109 (52%), Gaps = 5/109 (4%)

Query: 67  ILLTEKALKHLSKMRSE---RSEDLCLRIGVKQGGCSGMSYTMEFENRANARPDDSVIEY 123
           + LT  A++ L ++++    R +   LRI V+   C    Y +         P D + + 
Sbjct: 2   VELTPAAIQELERLQTHGVRRGQAAILRIQVQPSECGDWRYDLALVAEPK--PTDLLTQS 59

Query: 124 DGFVIVCDPKSLLFLFGMQLDYSDALIGGGFSFKNPNATQTCGCGKSFA 172
            G+ I    ++   L G+++DY + L+GG F F NPNA+QTCGCG +F 
Sbjct: 60  QGWTIAIAAEAAELLRGLRVDYIEDLMGGAFRFHNPNASQTCGCGMAFR 108

>2apn_A Protein HI1723; HI1723 solution structure, structural genomics, structure 2 function project, S2F, unknown function; NMR {Haemophilus influenzae} Length = 114

 Score =  147 bits (373), Expect = 1e-46
 Identities = 44/114 (38%), Positives = 62/114 (54%), Gaps = 3/114 (2%)

Query: 60  TEDLKPAILLTEKALKHLSK-MRSERSEDLCLRIGVKQGGCSGMSYTMEFENRANARPDD 118
            +D+   +  T+ A   +   +  E + DL LR+ +  GGCSG  Y   F+ + N    D
Sbjct: 2   IDDMAVPLTFTDAAANKVKSLISEEENTDLKLRVYITGGGCSGFQYGFTFDEKVN--DGD 59

Query: 119 SVIEYDGFVIVCDPKSLLFLFGMQLDYSDALIGGGFSFKNPNATQTCGCGKSFA 172
             IE  G  +V DP SL +L G  +DY++ L G  F+  NPNAT TCGCG SF+
Sbjct: 60  LTIEKSGVQLVIDPMSLQYLIGGTVDYTEGLEGSRFTVNNPNATSTCGCGSSFS 113

>2k4z_A DSRR; ISCA/SUFA/HESB like fold, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Allochromatium vinosum} Length = 125

 Score =  123 bits (310), Expect = 6e-37
 Identities = 28/112 (25%), Positives = 44/112 (39%), Gaps = 7/112 (6%)

Query: 53  TSAVAPATEDLKPAILLTEKALKHLSKMRSER-SEDLCLRIGVKQGGCSGMSYTMEFENR 111
           +S + P          LT  A + + K   +  +E +CLR+   +     + Y M F++ 
Sbjct: 11  SSGLVPRGS--HMMFKLTPAAAEQVLKAAKQGGTEGMCLRLAAGRNPDGSIDYRMGFDDL 68

Query: 112 ANARPDDSVIEYDGFVIVCDPKSLLFLFGMQLDYSDALIGG-GFSFKNPNAT 162
                DD  +  +G  IV  P  +  L    LDY +   G   F F NP   
Sbjct: 69  ---TEDDIRLTSEGVEIVIAPDYVSLLDQTTLDYVELEPGQFHFIFLNPRDP 117

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	175
1r94_A	118	Protein YFHF; tetrameric, beta barrel, iron-sulfur	100.0
1nwb_A	124	Hypothetical protein AQ_1857; QR6, structural geno	100.0
1x0g_A	112	ISCA; [2Fe-2S], biosynthesis, cyanobacteria, domai	100.0
2d2a_A	145	SUFA protein; iron-sulfur cluster, iron, ISCA, YAD	100.0
2apn_A	114	Protein HI1723; HI1723 solution structure, structu	100.0
2k4z_A	125	DSRR; ISCA/SUFA/HESB like fold, structural genomic	99.94
2p2e_A	128	Putative Fe-S biosynthesis protein; hypothetical p	99.85
2qgo_A	141	Putative Fe-S biosynthesis protein; PSI-2, NYSGXRC	99.78

>1r94_A Protein YFHF; tetrameric, beta barrel, iron-sulfur cluster protein, pseudo-symmetric motifs, metal transport; 2.30A {Escherichia coli} SCOP: b.124.1.1 PDB: 1r95_A 1s98_A

Probab=100.00  E-value=9.8e-38  Score=234.20  Aligned_cols=108  Identities=41%  Similarity=0.775  Sum_probs=90.9

Q ss_pred             CceeeCHHHHHHHHHHHhcCCCCceEEEEEecCCCCCceeeEEEecccCCCCCCceeeeCCEEEEEcccccccccCcEEE
Q 030533           65 PAILLTEKALKHLSKMRSERSEDLCLRIGVKQGGCSGMSYTMEFENRANARPDDSVIEYDGFVIVCDPKSLLFLFGMQLD  144 (175)
Q Consensus        65 ~~ItIT~~A~~~Lk~l~~~~~~~~~LRI~v~~~GCsG~~y~l~l~~~~~~~~~D~vie~~Gi~v~iD~~s~~~L~g~~ID  144 (175)
                      |+|+|||+|+++|++++++++++.+|||+|+++||+|++|.|.++++.+  ++|.+++.+|++|+||+.+++||+|++||
T Consensus         1 M~I~iT~~A~~~l~~ll~~~~~~~~LRv~V~~gGCsG~~y~l~~~~~~~--~~D~v~e~~Gv~v~vd~~s~~~L~g~~ID   78 (118)
T 1r94_A            1 MSITLSDSAAARVNTFLANRGKGFGLRLGVRTSGCSGMAYVLEFVDEPT--PEDIVFEDKGVKVVVDGKSLQFLDGTQLD   78 (118)
T ss_dssp             CCCEECHHHHHHHHHHHHHHCCCSEEEEEEEECSSSCEEEEEEEESSCC--TTEEEEEETTEEEEEEGGGHHHHTTCEEE
T ss_pred             CceEECHHHHHHHHHHHhhCCCCceEEEEEECCCCCCeEEEEEEccCCC--CCceEEEECCEEEEEEHHHHHHhCCCEEE
Confidence            6899999999999999977655678999999999999999999987654  78999999999999999999999999999


Q ss_pred             eecCCCccceEEeCCCCCCCCCCCCCcccc
Q 030533          145 YSDALIGGGFSFKNPNATQTCGCGKSFAAE  174 (175)
Q Consensus       145 y~e~~~g~gF~~~nPn~~~~CGCG~SF~~~  174 (175)
                      |+++..+++|+|+|||++.+||||+||+++
T Consensus        79 y~~~~~g~gF~~~NPna~~~CgCG~SF~~~  108 (118)
T 1r94_A           79 FVKEGLNEGFKFTNPNVKDECGCGESFKLA  108 (118)
T ss_dssp             EEEETTEEEEEEECTTCCC-----------
T ss_pred             EEcCCCcCceEEeCCCCCCCCCCCCCcCCC
Confidence            999999999999999999999999999874

>1nwb_A Hypothetical protein AQ_1857; QR6, structural genomics, protein structure initiative, NESG, reduced dimensionality PSI; NMR {Aquifex aeolicus} SCOP: b.124.1.1

Probab=100.00  E-value=2.9e-37  Score=233.54  Aligned_cols=109  Identities=42%  Similarity=0.816  Sum_probs=87.9

Q ss_pred             CCceeeCHHHHHHHHHHHhcCCC-CceEEEEEecCCCCCceeeEEEecccCCCCCCceeeeCCEEEEEcccccccccCcE
Q 030533           64 KPAILLTEKALKHLSKMRSERSE-DLCLRIGVKQGGCSGMSYTMEFENRANARPDDSVIEYDGFVIVCDPKSLLFLFGMQ  142 (175)
Q Consensus        64 ~~~ItIT~~A~~~Lk~l~~~~~~-~~~LRI~v~~~GCsG~~y~l~l~~~~~~~~~D~vie~~Gi~v~iD~~s~~~L~g~~  142 (175)
                      +|+|+|||+|+++|++++++++. +.+|||+|+++||+|++|.|.|+++.+  ++|.+++.+|++|+||+.+++||+|++
T Consensus         7 ~m~I~iT~~A~~~l~~ll~~~~~~~~~LRv~V~~gGCsG~~y~l~~~~~~~--~~D~v~e~~Gv~v~VD~~s~~~L~G~~   84 (124)
T 1nwb_A            7 QFIFKVTDKAVEEIKKVAQENNIENPILRIRVVPGGCSGFQYAMGFDDTVE--EGDHVFEYDGVKVVIDPFSMPYVNGAE   84 (124)
T ss_dssp             CCCCEECHHHHHHHHHHHHTTTCSSCEEEECCCCCCTTCCCCCCCEECSCC--SSCCCCCCSSSEEEECTTTGGGSTTCE
T ss_pred             CceEEECHHHHHHHHHHHhhCCCCCceEEEEEEcCCCCCcEEEEEEccCCC--CCceEEEeCCEEEEEehHHHHHhCCCE
Confidence            47899999999999999987643 568999999999999999999998754  789999999999999999999999999


Q ss_pred             EEeecCCCccceEEeCCCCCCCCCCCCCcccc
Q 030533          143 LDYSDALIGGGFSFKNPNATQTCGCGKSFAAE  174 (175)
Q Consensus       143 IDy~e~~~g~gF~~~nPn~~~~CGCG~SF~~~  174 (175)
                      |||+++..+++|+|+|||++.+||||+||+++
T Consensus        85 IDy~~~~~g~gF~~~NPna~~~CgCG~SF~~~  116 (124)
T 1nwb_A           85 LDYVVDFMGGGFTIRNPNATGSCGCGSSFSCG  116 (124)
T ss_dssp             EEEEEETTEEEEEEECC---------------
T ss_pred             EEEEcCCCcceEEEeCCCCCcCCCCCCCcCCC
Confidence            99999999999999999999999999999864

>1x0g_A ISCA; [2Fe-2S], biosynthesis, cyanobacteria, domain swapping, Fe- S cluster, iron, iron-sulfur cluster protein, scaffold, sulfur; 2.50A {Thermosynechococcus elongatus}

Probab=100.00  E-value=3.5e-37  Score=228.93  Aligned_cols=107  Identities=32%  Similarity=0.668  Sum_probs=95.7

Q ss_pred             ceeeCHHHHHHHHHHHhcC-CC--CceEEEEEecCCCCCceeeEEEecccCCCCCCceeeeCCEEEEEcccccccccCcE
Q 030533           66 AILLTEKALKHLSKMRSER-SE--DLCLRIGVKQGGCSGMSYTMEFENRANARPDDSVIEYDGFVIVCDPKSLLFLFGMQ  142 (175)
Q Consensus        66 ~ItIT~~A~~~Lk~l~~~~-~~--~~~LRI~v~~~GCsG~~y~l~l~~~~~~~~~D~vie~~Gi~v~iD~~s~~~L~g~~  142 (175)
                      ||+|||+|+++|+++++++ +.  +.+|||+|+++||+|++|.|.|+++.+  ++|.+++.+|++|+||+.+++||+|++
T Consensus         1 mi~iT~~A~~~l~~ll~~~~~~~~~~~lRv~v~~gGCsG~~y~l~~~~~~~--~~D~v~e~~Gv~v~vd~~s~~~l~g~~   78 (112)
T 1x0g_A            1 MVELTPAAIQELERLQTHGVRRGQAAILRIQVQPSECGDWRYDLALVAEPK--PTDLLTQSQGWTIAIAAEAAELLRGLR   78 (112)
T ss_dssp             CCEECHHHHHHTCCCC----------CEEEEEEEBSSSSEEEEEEECSSCC--TTCEEECSSSCCEEECGGGHHHHTTCE
T ss_pred             CeEECHHHHHHHHHHHhhccCCCCceEEEEEEEcCCCCCeEEEEEECcCCC--CCCEEEEeCCEEEEEeHHHHHHhCCCE
Confidence            6999999999999998766 32  468999999999999999999998754  789999999999999999999999999


Q ss_pred             EEeecCCCccceEEeCCCCCCCCCCCCCcccc
Q 030533          143 LDYSDALIGGGFSFKNPNATQTCGCGKSFAAE  174 (175)
Q Consensus       143 IDy~e~~~g~gF~~~nPn~~~~CGCG~SF~~~  174 (175)
                      |||.++..+++|+|+|||++.+||||+||+++
T Consensus        79 IDy~~~~~g~gF~~~nPna~~~CgCG~SF~~~  110 (112)
T 1x0g_A           79 VDYIEDLMGGAFRFHNPNASQTCGCGMAFRVS  110 (112)
T ss_dssp             EEEEEETTEEEEEEECTTCSEECSSSSEEECC
T ss_pred             EEEEecCCCCEEEEeCCCCCcCCCCCCccccC
Confidence            99999999999999999999999999999874

>2d2a_A SUFA protein; iron-sulfur cluster, iron, ISCA, YADR, metal transport; 2.70A {Escherichia coli}

Probab=100.00  E-value=2.5e-36  Score=234.34  Aligned_cols=108  Identities=30%  Similarity=0.596  Sum_probs=101.2

Q ss_pred             CCceeeCHHHHHHHHHHHhcCCCCceEEEEEecCCCCCceeeEEEecccCCCCCCceeeeCCEEEEEcccccccccCcEE
Q 030533           64 KPAILLTEKALKHLSKMRSERSEDLCLRIGVKQGGCSGMSYTMEFENRANARPDDSVIEYDGFVIVCDPKSLLFLFGMQL  143 (175)
Q Consensus        64 ~~~ItIT~~A~~~Lk~l~~~~~~~~~LRI~v~~~GCsG~~y~l~l~~~~~~~~~D~vie~~Gi~v~iD~~s~~~L~g~~I  143 (175)
                      +|.|+|||+|+++|++++++++++.+|||+|+++||+|++|.|.|+++.+  ++|.+++.+|++|+||+.+++||+|++|
T Consensus        38 ~m~ItiTe~Aa~~lk~ll~~~~~~~~LRv~V~~gGCsG~~Y~l~l~~~~~--~~D~v~e~~Gv~v~VD~~s~~~L~G~~I  115 (145)
T 2d2a_A           38 WQGLTLTPAAAIHIRELVAKQPGMVGVRLGVKQTGCAGFGYVLDSVSEPD--KDDLLFEHDGAKLFVPLQAMPFIDGTEV  115 (145)
T ss_dssp             CCCCEECHHHHHHHHHHHHHSTTCCEEEEEEEEETTTEEEEEEEEESSCC--TTEEEEEETTEEEEEEGGGHHHHTTCEE
T ss_pred             cceEEECHHHHHHHHHHHhcCCCCceEEEEEECCCCCCcEEEEEECcCCC--CCCeEEEECCEEEEEeHHHHHhhCCCEE
Confidence            57799999999999999987755678999999999999999999997654  7899999999999999999999999999


Q ss_pred             EeecCCCccceEEeCCCCCCCCCCCCCccc
Q 030533          144 DYSDALIGGGFSFKNPNATQTCGCGKSFAA  173 (175)
Q Consensus       144 Dy~e~~~g~gF~~~nPn~~~~CGCG~SF~~  173 (175)
                      ||+++..+++|+|+|||++.+||||+||++
T Consensus       116 Dy~e~l~g~gF~f~NPna~~~CGCG~SF~v  145 (145)
T 2d2a_A          116 DFVREGLNQIFKFHNPKAQNECGCGESFGV  145 (145)
T ss_dssp             EEEEETTEEEEEEECTTTCSCCCCBCEEEC
T ss_pred             EEEcCCCcceEEEeCCCCCcccCCCCCccC
Confidence            999999999999999999999999999974

>2apn_A Protein HI1723; HI1723 solution structure, structural genomics, structure 2 function project, S2F, unknown function; NMR {Haemophilus influenzae}

Probab=100.00  E-value=1.1e-36  Score=226.70  Aligned_cols=111  Identities=41%  Similarity=0.768  Sum_probs=102.1

Q ss_pred             CCCCCceeeCHHHHHHHHHHHhcCC-CCceEEEEEecCCCCCceeeEEEecccCCCCCCceeeeCCEEEEEccccccccc
Q 030533           61 EDLKPAILLTEKALKHLSKMRSERS-EDLCLRIGVKQGGCSGMSYTMEFENRANARPDDSVIEYDGFVIVCDPKSLLFLF  139 (175)
Q Consensus        61 ~~~~~~ItIT~~A~~~Lk~l~~~~~-~~~~LRI~v~~~GCsG~~y~l~l~~~~~~~~~D~vie~~Gi~v~iD~~s~~~L~  139 (175)
                      +.+.|+|+|||+|+++|++++++++ ++.+|||+|+++||+|++|.|.++++.+  ++|.+++.+|++|+||+.+++||+
T Consensus         3 ~~~~~~i~iT~~A~~~i~~l~~~~~~~~~~lRi~v~~gGCsG~~y~l~~~~~~~--~~D~v~e~~Gv~v~id~~s~~~l~   80 (114)
T 2apn_A            3 DDMAVPLTFTDAAANKVKSLISEEENTDLKLRVYITGGGCSGFQYGFTFDEKVN--DGDLTIEKSGVQLVIDPMSLQYLI   80 (114)
T ss_dssp             SSSCCSCEECSHHHHHHHHHHHHHTCSSCEEEECCCCSSSSCSCCCEEECCSCC--SSCEEEECSSSEEEECHHHHHHHT
T ss_pred             ccCcCcEEECHHHHHHHHHHHHhCCCCCceEEEEEeCCCCCCcEEEEEECcCCC--CCCcEEEECCEEEEEehHHHHHhC
Confidence            3466789999999999999987653 4678999999999999999999998754  789999999999999999999999


Q ss_pred             CcEEEeecCCCccceEEeCCCCCCCCCCCCCccc
Q 030533          140 GMQLDYSDALIGGGFSFKNPNATQTCGCGKSFAA  173 (175)
Q Consensus       140 g~~IDy~e~~~g~gF~~~nPn~~~~CGCG~SF~~  173 (175)
                      |++|||+++..+++|+|+|||++.+||||+||++
T Consensus        81 g~~IDy~~~~~g~~F~~~nPna~~~CgCG~SF~~  114 (114)
T 2apn_A           81 GGTVDYTEGLEGSRFTVNNPNATSTCGCGSSFSI  114 (114)
T ss_dssp             TCEEEEECSSSCCEEEEECHHHHCCCCCCCCSCC
T ss_pred             CCEEEEEcCCCcceEEEeCCCCCcCCCCCCCccC
Confidence            9999999999999999999999999999999974

>2k4z_A DSRR; ISCA/SUFA/HESB like fold, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Allochromatium vinosum}

Probab=99.94  E-value=8e-27  Score=176.68  Aligned_cols=99  Identities=26%  Similarity=0.376  Sum_probs=91.3

Q ss_pred             CCCceeeCHHHHHHHHHHHhcCC-CCceEEEEEe--cCCCCCceeeEEEecccCCCCCCceeeeCCEEEEEccccccccc
Q 030533           63 LKPAILLTEKALKHLSKMRSERS-EDLCLRIGVK--QGGCSGMSYTMEFENRANARPDDSVIEYDGFVIVCDPKSLLFLF  139 (175)
Q Consensus        63 ~~~~ItIT~~A~~~Lk~l~~~~~-~~~~LRI~v~--~~GCsG~~y~l~l~~~~~~~~~D~vie~~Gi~v~iD~~s~~~L~  139 (175)
                      .+|+|+||++|+++|++++++++ ++.+|||+|+  ++|  |++|.|.|+++ +  ++|.+++.+|++|+||+.+++||+
T Consensus        19 ~~m~ItiT~~Aa~~ik~ll~~~~~~~~~LRv~V~~~~gG--G~~Y~l~l~~~-~--~~D~v~e~~Gv~v~VD~~s~~~L~   93 (125)
T 2k4z_A           19 SHMMFKLTPAAAEQVLKAAKQGGTEGMCLRLAAGRNPDG--SIDYRMGFDDL-T--EDDIRLTSEGVEIVIAPDYVSLLD   93 (125)
T ss_dssp             CSSCEEECHHHHHHHHHHHHHSSSTTCEEEEEEEECTTS--CEEEEEEEECC-C--SSSCEEECSSCEEECCTTTHHHHT
T ss_pred             CCCEEEECHHHHHHHHHHHhhCCCCCceEEEEEEecCCC--CEEEEEEecCC-C--CCceEEEECCEEEEEeHHHHHhhC
Confidence            45889999999999999998764 3578999999  888  99999999988 4  799999999999999999999999


Q ss_pred             CcEEEeec-CCCccceEEeCCCCCCCCC
Q 030533          140 GMQLDYSD-ALIGGGFSFKNPNATQTCG  166 (175)
Q Consensus       140 g~~IDy~e-~~~g~gF~~~nPn~~~~CG  166 (175)
                      |++|||++ +..+++|+|+|||+++.|.
T Consensus        94 G~~IDy~~~~l~g~gF~~~NPna~~~~p  121 (125)
T 2k4z_A           94 QTTLDYVELEPGQFHFIFLNPRDPTYRP  121 (125)
T ss_dssp             TEEEEEEEEETTEEEEEEECSSSCSSCC
T ss_pred             CCEEEEEeCCCCcCeEEECCCCCCccCC
Confidence            99999999 9999999999999998885

>2p2e_A Putative Fe-S biosynthesis protein; hypothetical protein, beta-barrel, 10399L structural genomics, protein structure initiative, PSI-2; 2.48A {Lactobacillus salivarius} SCOP: b.124.1.1

Probab=99.85  E-value=1.5e-21  Score=148.22  Aligned_cols=96  Identities=16%  Similarity=0.159  Sum_probs=85.8

Q ss_pred             CCceeeCHHHHHHHHHHHhcCCCCceEEEEEecC-------CCCC-ceeeEEEecccCCCC----CCceeeeCCEEEEEc
Q 030533           64 KPAILLTEKALKHLSKMRSERSEDLCLRIGVKQG-------GCSG-MSYTMEFENRANARP----DDSVIEYDGFVIVCD  131 (175)
Q Consensus        64 ~~~ItIT~~A~~~Lk~l~~~~~~~~~LRI~v~~~-------GCsG-~~y~l~l~~~~~~~~----~D~vie~~Gi~v~iD  131 (175)
                      .|.|+|||+|+++|++++.+++...+||+. +++       ||+| +.|.|.|+++.+  +    +|.+++.+|++|+||
T Consensus         2 ~M~ItlT~~A~~~l~~~l~~~~~~l~Lr~~-dg~g~y~k~ggCsg~~~Y~l~~v~~~~--~~~~~~D~~~e~~g~~v~vd   78 (128)
T 2p2e_A            2 SLKITVTDDAAKKLQRYTDDSNAVLLLDFD-DGVGALSKVGVCSLNSDFRILVVSKDM--DYKKDYNEVIDSNIGKFYYK   78 (128)
T ss_dssp             -CEEEECHHHHHHHHHHHTCTTEEEEEEEC-SSCSGGGGSSCCCCSCCEEEEEEETTS--SCTTTSCEEEEETTSCEEEC
T ss_pred             ccEEEECHHHHHHHHHHHhcCCceEEEEEe-CCCCccccCCCCCCCCEEEEEEeccCC--CCCCCCCEEEEeCCEEEEEC
Confidence            477999999999999999887544689999 666       7999 599999998765  5    799999999999999


Q ss_pred             ccccccccC-cEEEeecCC----Cccc-eEEeCCCCC
Q 030533          132 PKSLLFLFG-MQLDYSDAL----IGGG-FSFKNPNAT  162 (175)
Q Consensus       132 ~~s~~~L~g-~~IDy~e~~----~g~g-F~~~nPn~~  162 (175)
                      +.++.||+| ++|||+++.    .+++ |.|.|||++
T Consensus        79 ~~s~~~ldgg~~iDy~~~~~~l~L~s~~f~~~NPN~~  115 (128)
T 2p2e_A           79 GYSKMYMDDNMKISLNTNNSLLRLTGDNSGELMPALS  115 (128)
T ss_dssp             GGGGGGSCSEEEEEECSSSSCEEEEETTTEEEEEEEC
T ss_pred             cchHHhhCCCeEEEEeCCCceEEecCCccEEECCCCe
Confidence            999999996 999999998    8999 999999986

>2qgo_A Putative Fe-S biosynthesis protein; PSI-2, NYSGXRC, 10399G, Fe-S cluster protein, structural GEN protein structure initiative; 2.04A {Lactobacillus acidophilus}

Probab=99.78  E-value=7e-20  Score=141.27  Aligned_cols=90  Identities=21%  Similarity=0.354  Sum_probs=72.7

Q ss_pred             CCceeeCHHHHHHHHHHHhcCCCCceE-------EEEEecCCCC-CceeeEEEecccCCCCC-CceeeeC-CEEEEEccc
Q 030533           64 KPAILLTEKALKHLSKMRSERSEDLCL-------RIGVKQGGCS-GMSYTMEFENRANARPD-DSVIEYD-GFVIVCDPK  133 (175)
Q Consensus        64 ~~~ItIT~~A~~~Lk~l~~~~~~~~~L-------RI~v~~~GCs-G~~y~l~l~~~~~~~~~-D~vie~~-Gi~v~iD~~  133 (175)
                      .|.|+|||+|+++|++++..++ ..+|       |+.++++||+ |+.|.|.|+++..  ++ |.+++.+ |++|+||+.
T Consensus         3 ~M~ItlTd~Aa~~ik~~l~~~~-~l~L~~~Dgv~r~~v~gGGCSiG~~Y~l~~~~e~~--~dyD~~~e~~gGv~v~Vd~~   79 (141)
T 2qgo_A            3 LLNIKFTDNAVDYLKRREILDK-ILILITDDGGGKYSIQGGSCSMGAHFSIIWLDKVD--PDYPVKIANEQNVKIYTSDF   79 (141)
T ss_dssp             -CBEEECHHHHHHHHHTTCTTS-EEEEEECSSCSTTCC---------CEEEEEESSCC--TTCCEECBCSSCCEEEECHH
T ss_pred             ceEEEECHHHHHHHHHHHhhcc-ceeeecCCCceEEEEeCccCCCCCEEEEEEeecCC--CCCCEEEEeCCCEEEEECch
Confidence            5789999999999999998764 6789       9999999999 9999999998765  78 9999999 599999999


Q ss_pred             cccccc-CcEEEeecCCCccceEEeCCC
Q 030533          134 SLLFLF-GMQLDYSDALIGGGFSFKNPN  160 (175)
Q Consensus       134 s~~~L~-g~~IDy~e~~~g~gF~~~nPn  160 (175)
                      +++||+ |++|||+++    .|.+++|.
T Consensus        80 sl~yLd~G~~IDy~~~----~l~Lks~s  103 (141)
T 2qgo_A           80 DKTMLGPNMVMDYNAG----SLSLSSDE  103 (141)
T ss_dssp             HHTTSCSSEEEEEETT----EEEEEETT
T ss_pred             HHHHhcCCCEEeEECC----EEEEcCCC
Confidence            999999 999999964    78888765

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	175
d1s98a_	97	b.124.1.1 (A:) Fe-S scaffold protein IscA (YfhF) {	6e-31
d1nwba_	101	b.124.1.1 (A:) Hypothetical protein Aq_1857 {Aquif	4e-24

>d1s98a_ b.124.1.1 (A:) Fe-S scaffold protein IscA (YfhF) {Escherichia coli [TaxId: 562]} Length = 97

class: All beta proteins
fold: HesB-like domain
superfamily: HesB-like domain
family: HesB-like domain
domain: Fe-S scaffold protein IscA (YfhF)
species: Escherichia coli [TaxId: 562]

 Score =  105 bits (264), Expect = 6e-31
 Identities = 37/97 (38%), Positives = 54/97 (55%), Gaps = 2/97 (2%)

Query: 66  AILLTEKALKHLSKMRSERSEDLCLRIGVKQGGCSGMSYTMEFENRANARPDDSVIEYDG 125
           +I L++ A   ++   + R +   LR+GV+  GCSGM+Y +EF +     P+D V E  G
Sbjct: 1   SITLSDSAAARVNTFLANRGKGFGLRLGVRTSGCSGMAYVLEFVDEPT--PEDIVFEDKG 58

Query: 126 FVIVCDPKSLLFLFGMQLDYSDALIGGGFSFKNPNAT 162
             +V D KS+ FL G QLD+    +  GF F NPN  
Sbjct: 59  VKVVVDGKSMQFLDGTQLDFVKEGLNEGFKFTNPNVK 95

>d1nwba_ b.124.1.1 (A:) Hypothetical protein Aq_1857 {Aquifex aeolicus [TaxId: 63363]} Length = 101

class: All beta proteins
fold: HesB-like domain
superfamily: HesB-like domain
family: HesB-like domain
domain: Hypothetical protein Aq 1857
species: Aquifex aeolicus [TaxId: 63363]

 Score = 88.7 bits (219), Expect = 4e-24
 Identities = 38/97 (39%), Positives = 56/97 (57%), Gaps = 3/97 (3%)

Query: 64  KPAILLTEKALKHLSKMRSER-SEDLCLRIGVKQGGCSGMSYTMEFENRANARPDDSVIE 122
           +    +T+KA++ + K+  E   E+  LRI V  GGCSG  Y M F++       D V E
Sbjct: 7   QFIFKVTDKAVEEIKKVAQENNIENPILRIRVVPGGCSGFQYAMGFDD--TVEEGDHVFE 64

Query: 123 YDGFVIVCDPKSLLFLFGMQLDYSDALIGGGFSFKNP 159
           YDG  +V DP S+ ++ G +LDY    +GGGF+ +NP
Sbjct: 65  YDGVKVVIDPFSMPYVNGAELDYVVDFMGGGFTIRNP 101

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	175
d1s98a_	97	Fe-S scaffold protein IscA (YfhF) {Escherichia col	99.96
d1nwba_	101	Hypothetical protein Aq_1857 {Aquifex aeolicus [Ta	99.94
d2p2ea1	118	Putative Fe-S biosynthesis protein LSL1730 {Lactob	98.95

>d1s98a_ b.124.1.1 (A:) Fe-S scaffold protein IscA (YfhF) {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: HesB-like domain
superfamily: HesB-like domain
family: HesB-like domain
domain: Fe-S scaffold protein IscA (YfhF)
species: Escherichia coli [TaxId: 562]

Probab=99.96  E-value=2.1e-29  Score=181.02  Aligned_cols=96  Identities=39%  Similarity=0.720  Sum_probs=90.3

Q ss_pred             ceeeCHHHHHHHHHHHhcCCCCceEEEEEecCCCCCceeeEEEecccCCCCCCceeeeCCEEEEEcccccccccCcEEEe
Q 030533           66 AILLTEKALKHLSKMRSERSEDLCLRIGVKQGGCSGMSYTMEFENRANARPDDSVIEYDGFVIVCDPKSLLFLFGMQLDY  145 (175)
Q Consensus        66 ~ItIT~~A~~~Lk~l~~~~~~~~~LRI~v~~~GCsG~~y~l~l~~~~~~~~~D~vie~~Gi~v~iD~~s~~~L~g~~IDy  145 (175)
                      .|+||++|+++|++++++++++.+|||.|+++||+|++|.|.|++..+  ++|.+++.+|++|+||+.+..||+|++|||
T Consensus         1 ~I~iT~~A~~~i~~ll~~~~~~~~lRi~v~~gGCsG~~Y~l~~~~~~~--~~D~~~~~~g~~i~id~~s~~~L~G~~IDy   78 (97)
T d1s98a_           1 SITLSDSAAARVNTFLANRGKGFGLRLGVRTSGCSGMAYVLEFVDEPT--PEDIVFEDKGVKVVVDGKSMQFLDGTQLDF   78 (97)
T ss_dssp             CCEECHHHHHHHHHHHHTTCCCCEEEEEEEEETTTEEEEEEEEESSCC--TTEEEEEETTEEEEEEGGGHHHHTTCEEEE
T ss_pred             CEEECHHHHHHHHHHHHhCCCCcEEEEEEEcCCCCcceEEeeecccCC--CCcEEEEcCCCEEEEeHHHHHHhCCCEEEE
Confidence            389999999999999988776789999999999999999999998764  789999999999999999999999999999


Q ss_pred             ecCCCccceEEeCCCCCC
Q 030533          146 SDALIGGGFSFKNPNATQ  163 (175)
Q Consensus       146 ~e~~~g~gF~~~nPn~~~  163 (175)
                      +++..++||+|+|||+++
T Consensus        79 ~~~~~~~gF~f~NPNak~   96 (97)
T d1s98a_          79 VKEGLNEGFKFTNPNVKD   96 (97)
T ss_dssp             ECSSTTCEEEEECTTSCC
T ss_pred             eecCCcCceEEECCCCCC
Confidence            999999999999999975

>d1nwba_ b.124.1.1 (A:) Hypothetical protein Aq_1857 {Aquifex aeolicus [TaxId: 63363]}

class: All beta proteins
fold: HesB-like domain
superfamily: HesB-like domain
family: HesB-like domain
domain: Hypothetical protein Aq 1857
species: Aquifex aeolicus [TaxId: 63363]

Probab=99.94  E-value=2.1e-27  Score=171.40  Aligned_cols=95  Identities=40%  Similarity=0.758  Sum_probs=88.1

Q ss_pred             CCCceeeCHHHHHHHHHHHhcCC-CCceEEEEEecCCCCCceeeEEEecccCCCCCCceeeeCCEEEEEcccccccccCc
Q 030533           63 LKPAILLTEKALKHLSKMRSERS-EDLCLRIGVKQGGCSGMSYTMEFENRANARPDDSVIEYDGFVIVCDPKSLLFLFGM  141 (175)
Q Consensus        63 ~~~~ItIT~~A~~~Lk~l~~~~~-~~~~LRI~v~~~GCsG~~y~l~l~~~~~~~~~D~vie~~Gi~v~iD~~s~~~L~g~  141 (175)
                      ...||+||++|+++|++++++++ ++.+|||.|+++||+|++|.|.+++..+  ++|.+++.+|++|+||+.++.||+|+
T Consensus         6 ~~~mi~iT~~A~~~i~~l~~~~~~~~~~lRi~v~~gGC~G~~Y~l~~~~~~~--~~D~v~~~~g~~i~id~~s~~~L~G~   83 (101)
T d1nwba_           6 QQFIFKVTDKAVEEIKKVAQENNIENPILRIRVVPGGCSGFQYAMGFDDTVE--EGDHVFEYDGVKVVIDPFSMPYVNGA   83 (101)
T ss_dssp             CCCCCEECHHHHHHHHHHHHTTTCSSCEEEECCCCCCTTCCCCCCCEECSCC--SSCCCCCCSSSEEEECTTTGGGSTTC
T ss_pred             cCCcEEECHHHHHHHHHHHHhcCCCCceEEEEEeCCCCCceeEEEeeccccc--cCceEEecCCeeEEECHHHHhHhCCC
Confidence            35789999999999999998754 5679999999999999999999997654  79999999999999999999999999


Q ss_pred             EEEeecCCCccceEEeCC
Q 030533          142 QLDYSDALIGGGFSFKNP  159 (175)
Q Consensus       142 ~IDy~e~~~g~gF~~~nP  159 (175)
                      +|||+++..+++|+|+||
T Consensus        84 ~IDy~~~~~~~~F~f~NP  101 (101)
T d1nwba_          84 ELDYVVDFMGGGFTIRNP  101 (101)
T ss_dssp             EEEEEEETTEEEEEEECC
T ss_pred             EEEEeecCCCCeEEEeCc
Confidence            999999999999999999

>d2p2ea1 b.124.1.1 (A:3-120) Putative Fe-S biosynthesis protein LSL1730 {Lactobacillus salivarius [TaxId: 1624]}

class: All beta proteins
fold: HesB-like domain
superfamily: HesB-like domain
family: HesB-like domain
domain: Putative Fe-S biosynthesis protein LSL1730
species: Lactobacillus salivarius [TaxId: 1624]

Probab=98.95  E-value=1.6e-09  Score=79.07  Aligned_cols=93  Identities=15%  Similarity=0.244  Sum_probs=72.2

Q ss_pred             CceeeCHHHHHHHHHHHhcCCCCceEEEEEe--------cCCCC-CceeeEEEeccc-C-CCCCCceeeeCCEEEEEccc
Q 030533           65 PAILLTEKALKHLSKMRSERSEDLCLRIGVK--------QGGCS-GMSYTMEFENRA-N-ARPDDSVIEYDGFVIVCDPK  133 (175)
Q Consensus        65 ~~ItIT~~A~~~Lk~l~~~~~~~~~LRI~v~--------~~GCs-G~~y~l~l~~~~-~-~~~~D~vie~~Gi~v~iD~~  133 (175)
                      |.|+||++|+++|++.+.+.+  ..|.+.+.        ++||+ |-.|.|.+.++. . ..+-|+.++.+-.+|++.+.
T Consensus         1 M~ItiT~~A~~~L~~~~~~~~--~~L~L~~dDG~g~yS~gggC~i~g~f~L~~v~~~~~~~~~yd~~iesn~g~i~~~~~   78 (118)
T d2p2ea1           1 LKITVTDDAAKKLQRYTDDSN--AVLLLDFDDGVGALSKVGVCSLNSDFRILVVSKDMDYKKDYNEVIDSNIGKFYYKGY   78 (118)
T ss_dssp             CEEEECHHHHHHHHHHHTCTT--EEEEEEECSSCSGGGGSSCCCCSCCEEEEEEETTSSCTTTSCEEEEETTSCEEECGG
T ss_pred             CEEEECHHHHHHHHHhhCCCC--CEEEEEEeCCCCccccCCccccCCEEEEEEEeCCCCCCcccceeecCCCccEEEccc
Confidence            679999999999999987653  34666655        57888 667899997642 1 11457889988889999999


Q ss_pred             ccccccC-cEEEeecCCCccceEEeCCCC
Q 030533          134 SLLFLFG-MQLDYSDALIGGGFSFKNPNA  161 (175)
Q Consensus       134 s~~~L~g-~~IDy~e~~~g~gF~~~nPn~  161 (175)
                      ...||++ ++|||.+.  ..-|+++.|+.
T Consensus        79 ~~~ffd~~m~ld~~~~--~~~l~LkSd~s  105 (118)
T d2p2ea1          79 SKMYMDDNMKISLNTN--NSLLRLTGDNS  105 (118)
T ss_dssp             GGGGSCSEEEEEECSS--SSCEEEEETTT
T ss_pred             chhhcCCCcEEEEcCC--CCEEEEeCCCc
Confidence            9999986 99999865  36788887763