Citrus Sinensis ID: 030550

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-----
Protein Sequence
MSANILILFLLSLFLLRPTLSLSSDPSPPTVYEILPKFGLPQGLLPSNVVSYTLQDDGLFTVELSSECYVEFDYLVYYEKTVTGKISIGSISNLKGIQVKRFLFWFDVDEIRVDLPPSDSIYFQVGIINKKLDVGQFETVHSCRDNGLSESGCGSWTRVLQLPTPTNEVQMLITE
Secondary Structure (PSIPRED)
ccHHHHHHHHHHHHHHHcccccccccccccHHHHHHHccccccccccccEEEEEcccccEEEEcccEEEEEEEEEEEEccEEEEEEEcccccccccEEEEEEEEEEEEEEEEEccccccEEEEEEcEEEEccccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHccccccccccccEEEEEccccEEEEEEcccEEEEEEEEEEEccEEEEEEEcccEccccEEEEEEEEEEEEEEEEEEEcccccEEEEEEEEEEccccHHHcccccccccccccccccccccccccccccHHHHHHHccc
Coil and Loop (DISEMBL)
MSANILILFLLSLFLlrptlslssdpspptvyeilpkfglpqgllpsnvvsytlqddglfTVELSSECYVEFDYLVYYEKTVTgkisigsisnlkgiqvkrflfwfdvdeirvdlppsdsiyfQVGIInkkldvgqfetvhscrdnglsesgcgswtrvlqlptptnEVQMLITE
Flexible Loop (DISEMBL)
MSANILILFLLSLFLLRPTLSLSSDPSPPTVYEILPKFGLPQGLLPSNVVSYTLQDDGLFTVELSSECYVEFDYLVYYEKTVTGKisigsisnlkgiQVKRFLFWFDVDEIRVDLPPSDSIYFQVGIINKKLDVGQFETVHSCRDNGLSESGCGSwtrvlqlptptnevqmlite
Low Complexity Region (SEG)
MSANIlilfllslfllrptlslssdpsppTVYEILPKFGLPQGLLPSNVVSYTLQDDGLFTVELSSECYVEFDYLVYYEKTVTGKISIGSISNLKGIQVKRFLFWFDVDEIRVDLPPSDSIYFQVGIINKKLDVGQFETVHSCRDNGLSESGCGSWTRVLQLPTPTNEVQMLITE
Disordered region (IsUnstruct)
***NILILFLLSLFLLRPTLSL*******TVYEILPKFGLPQGLLPSNVVSYTLQDDGLFTVELSSECYVEFDYLVYYEKTVTGKISIGSISNLKGIQVKRFLFWFDVDEIRVDLPPSDSIYFQVGIINKKLDVGQFETVHSCRDNGLSESGCGSWTRVLQL*************
Disordered Region (DISOPRED)
**ANILILFLLSLFLLRPTL*********TVYEILPKFGLPQGLLPSNVVSYTLQDDGLFTVELSSECYVEFDYLVYYEKTVTGKISIGSISNLKGIQVKRFLFWFDVDEIRVDLPPSDSIYFQVGIINKKLDVGQFETVHS***************RVLQ**TPTNEVQMLIT*
Disordered Region (DISEMBL)
MSANILILFLLSLFLLRPTLSLSSDPSPPTVYEILPKFGLPQGLLPSNVVSYTLQDDGLFTVELSSECYVEFDYLVYYEKTVTGKISIGSISNLKGIQVKRFLFWFDVDEIRVDLPPSDSIYFQVGIINKKLDVGQFETVHSCRDNGLSESGCGSWTRVLQLPTPTNEVQMLITE
Disordered Region (DISPRO)
*SANILILFLLSLFLLRPTLSLSSDPSPPTVYEILPKFGLPQGLLPSNVVSYTLQDDGLFTVELSSECYVEFDYLVYYEKTVTGKISIGSISNLKGIQVKRFLFWFDVDEIRVDLPPSDSIYFQVGIINKKLDVGQFETVHSC*****************QLPTPTNEVQ*LITE
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MSANILILFLLSLFLLRPTLSLSSDPSPPTVYEILPKFGLPQGLLPSNVVSYTLQDDGLFTVELSSECYVEFDYLVYYEKTVTGKISIGSISNLKGIQVKRFLFWFDVDEIRVDLPPSDSIYFQVGIINKKLDVGQFETVHSCRDNGLSESGCGSWTRVLQLPTPTNEVQMLITE
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	175
224076008	177	predicted protein [Populus trichocarpa]	0.954	0.943	0.705	5e-56
224057098	176	predicted protein [Populus trichocarpa]	0.874	0.869	0.679	5e-54
449448818	176	PREDICTED: uncharacterized protein LOC10	0.96	0.954	0.596	8e-54
357518823	172	hypothetical protein MTR_8g085580 [Medic	0.822	0.837	0.671	3e-51
330318680	173	hypothetical protein [Camellia sinensis]	0.902	0.913	0.620	7e-51
297812169	181	hypothetical protein ARALYDRAFT_326382 [	0.862	0.834	0.627	6e-48
356525241	175	PREDICTED: uncharacterized protein LOC10	0.925	0.925	0.587	7e-48
356512477	175	PREDICTED: uncharacterized protein LOC10	0.88	0.88	0.617	1e-47
255580086	165	conserved hypothetical protein [Ricinus	0.737	0.781	0.704	1e-47
18420052	181	uncharacterized protein [Arabidopsis tha	0.868	0.839	0.596	3e-47

>gi|224076008|ref|XP_002304870.1| predicted protein [Populus trichocarpa] gi|222842302|gb|EEE79849.1| predicted protein [Populus trichocarpa]

 Score =  222 bits (565), Expect = 5e-56,   Method: Compositional matrix adjust.
 Identities = 122/173 (70%), Positives = 132/173 (76%), Gaps = 6/173 (3%)

Query: 6   LILFLLSLF--LLRPTLSLSSDPSPPTVYEILPKFGLPQGLLPSNVVSYTLQDDGLFTVE 63
           L LF L LF  L RPTLS   DPSP TV+EILPKFGLP GLLP  V SY+L DDG FTV 
Sbjct: 8   LTLFSLVLFFSLTRPTLS--QDPSP-TVFEILPKFGLPSGLLPKTVKSYSLSDDGSFTVY 64

Query: 64  LSSECYVEFDYLVYYEKTVTGKISIGSISNLKGIQVKRFLFWFDVDEIRVDLPPSDSIYF 123
           L  ECYVEFDYLVYYEK +TGK+S GSISNLKGIQV+RF  W  VD IRVDLPPSDSIYF
Sbjct: 65  LEKECYVEFDYLVYYEKKITGKLSYGSISNLKGIQVQRFFLWLGVDNIRVDLPPSDSIYF 124

Query: 124 QVGIINKKLDVGQFETVHSCRDNGLSESGCGS-WTRVLQLPTPTNEVQMLITE 175
           QVG INKKLDV QF+TVHSCR    S S  G  W + L+LP P N+VQML+TE
Sbjct: 125 QVGWINKKLDVDQFKTVHSCRAGVSSGSCGGGLWKQFLELPAPNNDVQMLLTE 177

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224057098|ref|XP_002299126.1| predicted protein [Populus trichocarpa] gi|222846384|gb|EEE83931.1| predicted protein [Populus trichocarpa]

 Score =  215 bits (548), Expect = 5e-54,   Method: Compositional matrix adjust.
 Identities = 106/156 (67%), Positives = 125/156 (80%), Gaps = 3/156 (1%)

Query: 21  SLSSDPSPPTVYEILPKFGLPQGLLPSNVVSYTLQDDGLFTVELSSECYVEFDYLVYYEK 80
           +LS DP P +V+EILPKFGLP GLLP+ V SY+L DDG FTV L  ECYVEFDYLVYYEK
Sbjct: 23  TLSQDP-PRSVFEILPKFGLPSGLLPNTVKSYSLSDDGNFTVYLEKECYVEFDYLVYYEK 81

Query: 81  TVTGKISIGSISNLKGIQVKRFLFWFDVDEIRVDLPPSDSIYFQVGIINKKLDVGQFETV 140
            +TGK+  GSI++LKGIQV++F  W DVDEI+VDLPPSDSIYFQVG INKKLD  QF+TV
Sbjct: 82  KITGKLGYGSITDLKGIQVQKFFLWLDVDEIKVDLPPSDSIYFQVGWINKKLDADQFKTV 141

Query: 141 HSCRDNGLSESGC-GSWTRVLQLPTPTNEVQMLITE 175
           HSCR  G+S   C G W + L+LP P ++VQML+TE
Sbjct: 142 HSCR-AGVSSGSCRGLWKQFLELPAPDDDVQMLLTE 176

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449448818|ref|XP_004142162.1| PREDICTED: uncharacterized protein LOC101215998 [Cucumis sativus] gi|449530349|ref|XP_004172158.1| PREDICTED: uncharacterized protein LOC101227250 [Cucumis sativus]

 Score =  214 bits (546), Expect = 8e-54,   Method: Compositional matrix adjust.
 Identities = 102/171 (59%), Positives = 130/171 (76%), Gaps = 3/171 (1%)

Query: 6   LILFLLSLFLLR-PTLSLSSDPSPPTVYEILPKFGLPQGLLPSNVVSYTLQDDGLFTVEL 64
           LI F   +FL   P+LS ++    PTVY++LPK+GLP GLLP +V+ YTL  DG F V L
Sbjct: 8   LIFFTFFVFLTSIPSLS-AAGSDAPTVYDVLPKYGLPSGLLPDSVLDYTLSSDGQFVVHL 66

Query: 65  SSECYVEFDYLVYYEKTVTGKISIGSISNLKGIQVKRFLFWFDVDEIRVDLPPSDSIYFQ 124
           +  CY+ FDYLVYY KT+TGK+  GSI++L GI+V++   WFDV EIRVDLPPSD+IYFQ
Sbjct: 67  AKPCYIHFDYLVYYHKTITGKLEYGSITDLDGIEVQKLFLWFDVKEIRVDLPPSDNIYFQ 126

Query: 125 VGIINKKLDVGQFETVHSCRDNGLSESGCGSWTRVLQLPTPTNEVQMLITE 175
           VG INKKLD+ QF+T+HSC+DN L+ S  GSW R+L+LP P  ++QMLITE
Sbjct: 127 VGFINKKLDIDQFKTIHSCQDNALATS-LGSWKRILELPPPIGDIQMLITE 176

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357518823|ref|XP_003629700.1| hypothetical protein MTR_8g085580 [Medicago truncatula] gi|355523722|gb|AET04176.1| hypothetical protein MTR_8g085580 [Medicago truncatula] gi|388521935|gb|AFK49029.1| unknown [Medicago truncatula]

 Score =  206 bits (523), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 98/146 (67%), Positives = 117/146 (80%), Gaps = 2/146 (1%)

Query: 30  TVYEILPKFGLPQGLLPSNVVSYTLQDDGLFTVELSSECYVEFDYLVYYEKTVTGKISIG 89
           TVY++LPKFGLP GLLP++V  Y+L DDG F V LS  CY++FDYLVYYEKT+TGK+S G
Sbjct: 29  TVYDLLPKFGLPSGLLPNSVTDYSLSDDGRFVVHLSDTCYIQFDYLVYYEKTITGKLSYG 88

Query: 90  SISNLKGIQVKRFLFWFDVDEIRVDLPPSDSIYFQVGIINKKLDVGQFETVHSCRDNGLS 149
           SIS+LKGIQV+R   WF+VDEIRVDLPPS+SIYFQVGIINKKL+V QF+TVHSCR N L 
Sbjct: 89  SISDLKGIQVQRVFIWFNVDEIRVDLPPSNSIYFQVGIINKKLNVDQFKTVHSCRRNSLR 148

Query: 150 ESGCGSWTRVLQLPTPTNEVQMLITE 175
            S C   + +  LP P  E+ ML+TE
Sbjct: 149 SSPCQPSSSL--LPAPLKEIPMLLTE 172

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|330318680|gb|AEC11000.1| hypothetical protein [Camellia sinensis]

 Score =  205 bits (521), Expect = 7e-51,   Method: Compositional matrix adjust.
 Identities = 108/174 (62%), Positives = 130/174 (74%), Gaps = 16/174 (9%)

Query: 6   LILFLLSLFLLRPTLSLS--SDPS--PPTVYEILPKFGLPQGLLPSNVVSYTLQDDGLFT 61
           L++F+LS      TLS+S  S PS  PPTVYEILPKFGLP GLLP  V SY+L DDG F 
Sbjct: 12  LLVFILS------TLSISAISQPSDEPPTVYEILPKFGLPSGLLPDTVKSYSLDDDGNFV 65

Query: 62  VELSSECYVEFDYLVYYEKTVTGKISIGSISNLKGIQVKRFLFWFDVDEIRVDLPPSDSI 121
           V+L   CY++FDYLVYYEK +TG +  GSI++L+GIQV++ L WFDVDEI+VDLPPSDSI
Sbjct: 66  VDLDKPCYIQFDYLVYYEKRITGVLKYGSITHLEGIQVQKLLLWFDVDEIKVDLPPSDSI 125

Query: 122 YFQVGIINKKLDVGQFETVHSCRDNGLSESGCGSWTRVLQLPTPTNEVQMLITE 175
           YF VG INKKLDV QF+TVHSCR    S +      RV++L TP  ++QMLITE
Sbjct: 126 YFLVGFINKKLDVDQFKTVHSCRKKATSSN------RVIELLTPGEDIQMLITE 173

Source: Camellia sinensis

Species: Camellia sinensis

Genus: Camellia

Family: Theaceae

Order: Ericales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297812169|ref|XP_002873968.1| hypothetical protein ARALYDRAFT_326382 [Arabidopsis lyrata subsp. lyrata] gi|297319805|gb|EFH50227.1| hypothetical protein ARALYDRAFT_326382 [Arabidopsis lyrata subsp. lyrata]

 Score =  195 bits (495), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 96/153 (62%), Positives = 116/153 (75%), Gaps = 2/153 (1%)

Query: 25  DP-SPPTVYEILPKFGLPQGLLPSNVVSYTLQDDGLFTVELSSECYVEFDYLVYYEKTVT 83
           DP S  TVYE+LPK+GLP GLLP +V  +TL DDG F V L S C +EFDYLV+Y+KT++
Sbjct: 29  DPDSISTVYELLPKYGLPSGLLPDSVTDFTLSDDGRFVVHLPSSCEIEFDYLVHYDKTIS 88

Query: 84  GKISIGSISNLKGIQVKRFLFWFDVDEIRVDLPPSDSIYFQVGIINKKLDVGQFETVHSC 143
           G+I  GSI+ LKGIQVK+F  W DVDEI+VDLPPSDSIYF+VG INKKLD+ QF+TVHSC
Sbjct: 89  GRIGYGSITELKGIQVKKFFIWLDVDEIKVDLPPSDSIYFKVGFINKKLDIDQFKTVHSC 148

Query: 144 RDNGLSESGCGSWTRVLQLPTP-TNEVQMLITE 175
            DNG+S S   SW   L+      +E +MLITE
Sbjct: 149 HDNGVSGSCGDSWKSFLEKGQGMMDEAEMLITE 181

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356525241|ref|XP_003531235.1| PREDICTED: uncharacterized protein LOC100797337 [Glycine max]

 Score =  195 bits (495), Expect = 7e-48,   Method: Compositional matrix adjust.
 Identities = 97/165 (58%), Positives = 121/165 (73%), Gaps = 3/165 (1%)

Query: 11  LSLFLLRPTLSLSSDPSPPTVYEILPKFGLPQGLLPSNVVSYTLQDDGLFTVELSSECYV 70
            +L  +  TL  ++  +  +VYEILPK+GLP GLLP  V  YTL +DG F V L+  CY+
Sbjct: 14  FALMAILSTLLCTAVAAKESVYEILPKYGLPSGLLPDTVTDYTLDEDGQFVVVLAKPCYI 73

Query: 71  EFDYLVYYEKTVTGKISIGSISNLKGIQVKRFLFWFDVDEIRVDLPPSDSIYFQVGIINK 130
           +FDYLVYYE  ++GK+S GSI+NLKGIQV+R   WF+VDEI+VDLPPS+SIYFQVGIINK
Sbjct: 74  QFDYLVYYETKISGKLSYGSITNLKGIQVQRLFIWFNVDEIKVDLPPSNSIYFQVGIINK 133

Query: 131 KLDVGQFETVHSCRDNGLSESGCGSWTRVLQLPTPTNEVQMLITE 175
           KLDV QF+TV SCR   LS   C    R +QLP P +E+ ML+TE
Sbjct: 134 KLDVHQFKTVRSCR-KSLSCPPC--LPRPIQLPAPVDEIPMLLTE 175

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356512477|ref|XP_003524945.1| PREDICTED: uncharacterized protein LOC100780285 [Glycine max]

 Score =  194 bits (493), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 97/157 (61%), Positives = 115/157 (73%), Gaps = 3/157 (1%)

Query: 19  TLSLSSDPSPPTVYEILPKFGLPQGLLPSNVVSYTLQDDGLFTVELSSECYVEFDYLVYY 78
           TL L +  +  +VYEILPK+GLP GLLP  V  Y L +DG F V L   CY++FDYLVYY
Sbjct: 22  TLLLCTAAAKESVYEILPKYGLPSGLLPDTVTDYKLDEDGQFVVVLPKPCYIQFDYLVYY 81

Query: 79  EKTVTGKISIGSISNLKGIQVKRFLFWFDVDEIRVDLPPSDSIYFQVGIINKKLDVGQFE 138
           E  ++GK+S GSI+NLKGIQV+R   WF+VDEIRVDLPPSDSIYFQVGIINKKLDV QF+
Sbjct: 82  ESKISGKLSYGSITNLKGIQVQRLFIWFNVDEIRVDLPPSDSIYFQVGIINKKLDVDQFK 141

Query: 139 TVHSCRDNGLSESGCGSWTRVLQLPTPTNEVQMLITE 175
           TV SCR    S S      R +QLP P +E+ ML+TE
Sbjct: 142 TVRSCRK---SLSCPPFLPRPIQLPAPVDEISMLLTE 175

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255580086|ref|XP_002530876.1| conserved hypothetical protein [Ricinus communis] gi|223529565|gb|EEF31516.1| conserved hypothetical protein [Ricinus communis]

 Score =  194 bits (493), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 93/132 (70%), Positives = 108/132 (81%), Gaps = 3/132 (2%)

Query: 31  VYEILPKFGLPQGLLPSNVVSYTLQDDGLFTVELSSECYVEFDYLVYYEKTVTGKISIGS 90
           VYEILPK+GLP GLLP++V +YTL +DG F V L   CY++FDYLVYYE  +TGK++IGS
Sbjct: 35  VYEILPKYGLPSGLLPNSVTNYTLSEDGRFVVVLGKPCYIQFDYLVYYETEITGKLNIGS 94

Query: 91  ISNLKGIQVKRFLFWFDVDEIRVDLPPSDSIYFQVGIINKKLDVGQFETVHSCRDNGLSE 150
           I+NLKGIQV+RF  WFDVDEI+VDLPPSDSIYF+VGIINKKLDV QF TVHSCRD     
Sbjct: 95  ITNLKGIQVQRFFLWFDVDEIKVDLPPSDSIYFKVGIINKKLDVDQFMTVHSCRDG---V 151

Query: 151 SGCGSWTRVLQL 162
           SG G W R LQ+
Sbjct: 152 SGKGFWDRFLQV 163

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18420052|ref|NP_568383.1| uncharacterized protein [Arabidopsis thaliana] gi|33589810|gb|AAQ22671.1| At5g19860 [Arabidopsis thaliana] gi|110740914|dbj|BAE98553.1| hypothetical protein [Arabidopsis thaliana] gi|332005375|gb|AED92758.1| uncharacterized protein [Arabidopsis thaliana]

 Score =  193 bits (490), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 93/156 (59%), Positives = 116/156 (74%), Gaps = 4/156 (2%)

Query: 24  SDPSP---PTVYEILPKFGLPQGLLPSNVVSYTLQDDGLFTVELSSECYVEFDYLVYYEK 80
           ++P P    TVYE+LPK+GLP GLLP  V  +TL DDG F V L + C +EFDYLV+Y+K
Sbjct: 26  NEPDPDSISTVYELLPKYGLPSGLLPDTVTDFTLSDDGRFVVHLPNSCEIEFDYLVHYDK 85

Query: 81  TVTGKISIGSISNLKGIQVKRFLFWFDVDEIRVDLPPSDSIYFQVGIINKKLDVGQFETV 140
           T++G+I  GSI+ LKGIQVK+F  W DVDEI+VDLPPSDSIYF+VG INKKLD+ QF+T+
Sbjct: 86  TISGRIGYGSITELKGIQVKKFFIWLDVDEIKVDLPPSDSIYFKVGFINKKLDIDQFKTI 145

Query: 141 HSCRDNGLSESGCGSWTRVLQLPTP-TNEVQMLITE 175
           HSC DNG+S S   SW   L+      +E +MLITE
Sbjct: 146 HSCHDNGVSGSCGDSWKSFLEKGQGMMDEAEMLITE 181

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	175
TAIR|locus:2147610	181	AT5G19860 "AT5G19860" [Arabido	0.828	0.801	0.628	2.6e-47
TAIR|locus:505006187	175	AT1G55265 [Arabidopsis thalian	0.685	0.685	0.455	2.5e-26
TAIR|locus:2079601	169	AT3G07470 [Arabidopsis thalian	0.651	0.674	0.391	9.2e-20
TAIR|locus:2172094	161	AT5G54530 "AT5G54530" [Arabido	0.68	0.739	0.378	4e-19
TAIR|locus:2079701	271	AT3G07460 "AT3G07460" [Arabido	0.651	0.420	0.356	8.6e-17
TAIR|locus:2171297	195	AT5G16380 "AT5G16380" [Arabido	0.64	0.574	0.336	8.8e-15
TAIR|locus:505006197	156	AT1G61667 "AT1G61667" [Arabido	0.674	0.756	0.310	2.3e-14
TAIR|locus:2133254	154	AT4G02360 "AT4G02360" [Arabido	0.634	0.720	0.344	2.1e-13
TAIR|locus:505006095	149	AT1G02813 [Arabidopsis thalian	0.634	0.744	0.310	8.2e-12
TAIR|locus:505006096	166	AT1G02816 "AT1G02816" [Arabido	0.634	0.668	0.299	2.2e-11

TAIR|locus:2147610 AT5G19860 "AT5G19860" [Arabidopsis thaliana (taxid:3702)]

 Score = 495 (179.3 bits), Expect = 2.6e-47, P = 2.6e-47
 Identities = 93/148 (62%), Positives = 114/148 (77%)

Query:    30 TVYEILPKFGLPQGLLPSNVVSYTLQDDGLFTVELSSECYVEFDYLVYYEKTVTGKISIG 89
             TVYE+LPK+GLP GLLP  V  +TL DDG F V L + C +EFDYLV+Y+KT++G+I  G
Sbjct:    35 TVYELLPKYGLPSGLLPDTVTDFTLSDDGRFVVHLPNSCEIEFDYLVHYDKTISGRIGYG 94

Query:    90 SISNLKGIQVKRFLFWFDVDEIRVDLPPSDSIYFQVGIINKKLDVGQFETVHSCRDNGLS 149
             SI+ LKGIQVK+F  W DVDEI+VDLPPSDSIYF+VG INKKLD+ QF+T+HSC DNG+S
Sbjct:    95 SITELKGIQVKKFFIWLDVDEIKVDLPPSDSIYFKVGFINKKLDIDQFKTIHSCHDNGVS 154

Query:   150 ESGCG-SWTRVLQLPTPT-NEVQMLITE 175
              S CG SW   L+      +E +MLITE
Sbjct:   155 GS-CGDSWKSFLEKGQGMMDEAEMLITE 181

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

GO:0005773 "vacuole" evidence=IDA

TAIR|locus:505006187 AT1G55265 [Arabidopsis thaliana (taxid:3702)]

 Score = 297 (109.6 bits), Expect = 2.5e-26, P = 2.5e-26
 Identities = 56/123 (45%), Positives = 81/123 (65%)

Query:    31 VYEILPKFGLPQGLLPSNVVSYTLQDDGLFTVELSSECYVEF-DYLVYYEKTVTGKISIG 89
             ++++LP++G P+GLLP+NV SYT+ DDG FTV+L S CYV+F D LV+Y K + GK+S G
Sbjct:    54 IHDLLPRYGFPKGLLPNNVKSYTISDDGDFTVDLISSCYVKFSDQLVFYGKNIAGKLSYG 113

Query:    90 SISNLKGIQVKRFLFWFDVDEIRVDLPPSDSIYFQVGIINKKLDVGQFETVHSCRDN-GL 148
             S+ +++GIQ K    W  +  +  D P S ++ F VG ++K L    FE V SC  N  L
Sbjct:   114 SVKDVRGIQAKEAFLWLPITAMESD-PSSATVVFSVGFVSKTLPASMFENVPSCSRNLNL 172

Query:   149 SES 151
              +S
Sbjct:   173 QDS 175

GO:0005576 "extracellular region" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0005773 "vacuole" evidence=IDA

TAIR|locus:2079601 AT3G07470 [Arabidopsis thaliana (taxid:3702)]

 Score = 235 (87.8 bits), Expect = 9.2e-20, P = 9.2e-20
 Identities = 45/115 (39%), Positives = 65/115 (56%)

Query:    30 TVYEILPKFGLPQGLLPSNVVSYTLQ-DDGLFTVELSSECYVEFDYLVYYEKTVTGKISI 88
             T+YEIL   GLP G+ P  V  +T   + G F+V L+  C  +++  ++Y+  +TG I  
Sbjct:    30 TIYEILLANGLPSGIFPKGVREFTFDVETGRFSVYLNQACEAKYETEIHYDANITGTIGS 89

Query:    89 GSISNLKGIQVKRFLFWFDVDEIRVDLPPSDSIYFQVGIINKKLDVGQFETVHSC 143
               IS+L GI  +    WF V  IRVD+P S  IYF VG++ K+  +  FET   C
Sbjct:    90 AQISDLSGISAQELFLWFPVKGIRVDVPSSGLIYFDVGVVRKQYSLSLFETPRDC 144

GO:0005576 "extracellular region" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0005773 "vacuole" evidence=IDA

TAIR|locus:2172094 AT5G54530 "AT5G54530" [Arabidopsis thaliana (taxid:3702)]

 Score = 229 (85.7 bits), Expect = 4.0e-19, P = 4.0e-19
 Identities = 45/119 (37%), Positives = 69/119 (57%)

Query:    30 TVYEILPKFGLPQGLLPSNVVSYTLQDDGLFTVELSSECYVEFDYLVYYEKTVTGKISIG 89
             TV+++L   GLP GLLP  V SY L +DG   V L++ CY +F+  V++E  V G +S G
Sbjct:    28 TVHDVLRSEGLPAGLLPQEVDSYILHNDGRLEVFLAAPCYAKFETNVHFEAVVRGNLSYG 87

Query:    90 SISNLKGIQVKRFLFWFDVDEIRVDLPPSDSIYFQVGIINKKLDVGQFETVHSCRDNGL 148
             S+  ++G+  K    W  V +I V+ P S  I F +G+  K+L +  FE    C+ +G+
Sbjct:    88 SLVGVEGLSQKELFLWLQVKDIVVENPNSGVIVFDIGVAFKQLSLSLFEDPPKCKPDGV 146

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

TAIR|locus:2079701 AT3G07460 "AT3G07460" [Arabidopsis thaliana (taxid:3702)]

 Score = 207 (77.9 bits), Expect = 8.6e-17, P = 8.6e-17
 Identities = 41/115 (35%), Positives = 64/115 (55%)

Query:    30 TVYEILPKFGLPQGLLPSNVVSYTLQDD-GLFTVELSSECYVEFDYLVYYEKTVTGKISI 88
             ++ EIL   GLP GL P  V  +T+  + G F+V L+  C  +++  ++Y++ V+G I  
Sbjct:    29 SIDEILLANGLPLGLFPKGVKGFTVNGETGRFSVYLNQSCQAKYETELHYDEIVSGTIGY 88

Query:    89 GSISNLKGIQVKRFLFWFDVDEIRVDLPPSDSIYFQVGIINKKLDVGQFETVHSC 143
               I +L GI  +    W  V  IRVD+P S  I+F VG++ K+  +  FET   C
Sbjct:    89 AQIRDLSGISAQELFLWLQVKGIRVDVPSSGLIFFDVGVLRKQYSLSLFETPRDC 143

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0005773 "vacuole" evidence=IDA

TAIR|locus:2171297 AT5G16380 "AT5G16380" [Arabidopsis thaliana (taxid:3702)]

 Score = 188 (71.2 bits), Expect = 8.8e-15, P = 8.8e-15
 Identities = 38/113 (33%), Positives = 61/113 (53%)

Query:    32 YEILPKFGLPQGLLPSNVVSYTLQ-DDGLFTVELSSECYVEFDYLVYYEKTVTGKISIGS 90
             Y+ L +  LP G++P  V ++++    G FTV L   C  +F+   +++  ++G +S G 
Sbjct:    32 YDYLRESNLPAGIVPKGVTNFSIDIKTGRFTVALPVPCDAKFENQFHFDYNISGVLSDGR 91

Query:    91 ISNLKGIQVKRFLFWFDVDEIRVDLPPSDSIYFQVGIINKKLDVGQFETVHSC 143
             I NL G+  K    WF V  I VD   S  I+F VG+ +K+L +  FE+   C
Sbjct:    92 IGNLSGVTQKELFLWFAVKGIHVDPQSSGLIHFDVGVADKQLSLSLFESPRDC 144

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

TAIR|locus:505006197 AT1G61667 "AT1G61667" [Arabidopsis thaliana (taxid:3702)]

 Score = 184 (69.8 bits), Expect = 2.3e-14, P = 2.3e-14
 Identities = 37/119 (31%), Positives = 61/119 (51%)

Query:    30 TVYEILPKFGLPQGLLPSNVVSYTLQDD-GLFTVELSSECYVEFDYLVYYEKTVTGKISI 88
             ++  +L   GLP GL P NV SY+L D  G   V+L + C+  F+  VY+++ +   +S 
Sbjct:    21 SIRNLLEARGLPGGLFPDNVESYSLDDKTGELEVQLQNPCFARFENRVYFDRVIKANLSY 80

Query:    89 GSISNLKGIQVKRFLFWFDVDEIRVDLPPSDSIYFQVGIINKKLDVGQFETVHSCRDNG 147
             G +  L+G+  +    W  V  I V+ P S  + F +G+ +K++    FE    C   G
Sbjct:    81 GGLVGLEGLTQEELFLWLPVKGIAVNDPSSGLVLFDIGVAHKQISRSLFEDPPVCYPPG 139

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

TAIR|locus:2133254 AT4G02360 "AT4G02360" [Arabidopsis thaliana (taxid:3702)]

 Score = 175 (66.7 bits), Expect = 2.1e-13, P = 2.1e-13
 Identities = 40/116 (34%), Positives = 57/116 (49%)

Query:    30 TVYEILPKFGLPQGLLPSNVVSYTLQDD-GLFTVELSSEC-YVEFDYLVYYEKTVTGKIS 87
             T Y+ +  + LP G+LP  VV Y L    G F V  +  C +    Y + Y+ T++G IS
Sbjct:    28 TAYDAVKLYNLPPGILPKGVVDYELNPKTGNFKVYFNDTCEFTIQSYQLKYKSTISGVIS 87

Query:    88 IGSISNLKGIQVKRFLFWFDVDEIRVDLPPSDSIYFQVGIINKKLDVGQFETVHSC 143
              G + NLKG+ VK   FW ++ E+ +D    D   F VGI +       FE    C
Sbjct:    88 PGHVKNLKGVSVKVLFFWVNIAEVSLDGADLD---FSVGIASASFPAANFEESPQC 140

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:505006095 AT1G02813 [Arabidopsis thaliana (taxid:3702)]

 Score = 160 (61.4 bits), Expect = 8.2e-12, P = 8.2e-12
 Identities = 36/116 (31%), Positives = 59/116 (50%)

Query:    30 TVYEILPKFGLPQGLLPSNVVSYTL-QDDGLFTVELSSECYVEFD-YLVYYEKTVTGKIS 87
             +VY++L  + LP+G+LP  V  Y L +  G+F V  ++ C    D Y V Y+  ++G I+
Sbjct:    24 SVYQVLENYTLPRGILPEGVHDYDLNRRTGVFKVRFNTTCQFSIDSYKVKYKPVISGIIT 83

Query:    88 IGSISNLKGIQVKRFLFWFDVDEIRVDLPPSDSIYFQVGIINKKLDVGQFETVHSC 143
              G +  L G+ VK   FW ++ E+  D    D + F VG  +++     F     C
Sbjct:    84 RGRVIRLIGVSVKVLFFWINISEVSRD---GDDVEFFVGAASEEFSSKYFVDSPKC 136

GO:0005576 "extracellular region" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0010584 "pollen exine formation" evidence=RCA

TAIR|locus:505006096 AT1G02816 "AT1G02816" [Arabidopsis thaliana (taxid:3702)]

 Score = 156 (60.0 bits), Expect = 2.2e-11, P = 2.2e-11
 Identities = 35/117 (29%), Positives = 58/117 (49%)

Query:    30 TVYEILPKFGLPQGLLPSNVVSYTL-QDDGLFTVELSSECY--VEFDYLVYYEKTVTGKI 86
             T Y +L  +  P G+LP  VVSY L +  G F    +  C   ++  Y + Y+ T++G I
Sbjct:    31 TAYTLLQSYNFPVGILPKGVVSYDLDKSTGQFHAYFNKSCSFALQGSYQLDYKSTISGYI 90

Query:    87 SIGSISNLKGIQVKRFLFWFDVDEIRVDLPPSDSIYFQVGIINKKLDVGQFETVHSC 143
             S   I+ L G++VK    W ++ E+   +   D + F VGI +   ++ +F     C
Sbjct:    91 SENKITKLTGVKVKVLFLWLNIVEV---IRNGDELEFSVGITSANFEIDEFYESPQC 144

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0005773 "vacuole" evidence=IDA

GO:0005774 "vacuolar membrane" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	175
pfam04398	108	pfam04398, DUF538, Protein of unknown function, DU	2e-35
cd13219	161	cd13219, PH-GRAM_C2-GRAM, C2 and GRAM domain-conta	0.001

>gnl|CDD|218064 pfam04398, DUF538, Protein of unknown function, DUF538

 Score =  119 bits (300), Expect = 2e-35
 Identities = 47/110 (42%), Positives = 62/110 (56%), Gaps = 4/110 (3%)

Query: 30  TVYEILPKFGLPQGLLPSNVVSYTL-QDDGLFTVELSSECYVEF-DYLVYYEKTVTGKIS 87
           T YE+L ++GLP GLLP  V  YTL +  G F V L+  C   F  Y V Y+ TVTG IS
Sbjct: 1   TAYELLEEYGLPVGLLPKGVTEYTLDETTGKFWVYLNGTCEFTFEGYSVRYDPTVTGYIS 60

Query: 88  IGSISNLKGIQVKRFLFWFDVDEIRVDLPPSDSIYFQVGIINKKLDVGQF 137
            G +S L+G++VK    W  + EI VD    D + F VG+++K      F
Sbjct: 61  KGRLSGLEGVKVKVLFLWVPIVEISVD--DGDKLTFSVGVLSKSFPADAF 108

This family consists of several plant proteins of unknown function. Length = 108

>gnl|CDD|241373 cd13219, PH-GRAM_C2-GRAM, C2 and GRAM domain-containing protein Pleckstrin Homology-Glucosyltransferases, Rab-like GTPase activators and Myotubularins (PH-GRAM) domain

 Score = 37.2 bits (87), Expect = 0.001
 Identities = 17/34 (50%), Positives = 22/34 (64%), Gaps = 1/34 (2%)

Query: 88  IGSISNLKGIQVKRFLFWFDVDEIRVDLPPSDSI 121
           IG  SNL G + K F  W D++EI+V  PPS S+
Sbjct: 59  IGFYSNLFGHKTKFFFLWEDIEEIQV-SPPSLSV 91

C2GRAM contains two N-terminal C2 domains followed by a single PH-GRAM domain. Since it contains both of these domains it is assumed that this gene cross-links both calcium and phosphoinositide signaling pathways. In general he C2 domain is involved in binding phospholipids in a calcium dependent manner or calcium independent manner. The GRAM domain is found in glucosyltransferases, myotubularins and other putative membrane-associated proteins. The GRAM domain is part of a larger motif with a pleckstrin homology (PH) domain fold. Length = 161

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	175
PF04398	110	DUF538: Protein of unknown function, DUF538; Inter	100.0

>PF04398 DUF538: Protein of unknown function, DUF538; InterPro: IPR007493 This family consists of several plant proteins of unknown function

Probab=100.00  E-value=1.7e-44  Score=275.51  Aligned_cols=108  Identities=48%  Similarity=0.886  Sum_probs=82.0

Q ss_pred             cHHHhhhhcCCCCCCCCCCceeEEEecC-ccEEEEEcCeeEEEEe-EEEEEccEEEEEEecCccccccceeEEEEEeeee
Q 030550           30 TVYEILPKFGLPQGLLPSNVVSYTLQDD-GLFTVELSSECYVEFD-YLVYYEKTVTGKISIGSISNLKGIQVKRFLFWFD  107 (175)
Q Consensus        30 ta~elL~~~GLP~GLLP~~V~~y~l~~~-G~f~v~l~~~C~~~f~-~~v~Y~~~ItG~i~~gkI~~L~GVkvK~lf~Wv~  107 (175)
                      ||||+|++||||+||||++|++|++|++ |.|||+|+++|+|+|+ |+|+|+++|||+|++|+|++|+|||+|++|+|++
T Consensus         1 tayelL~~~glP~GLLP~~v~~y~l~~~tG~f~v~l~~~C~~~~~~~~v~Y~~~ItG~i~~g~i~~L~GVk~k~l~~W~~   80 (110)
T PF04398_consen    1 TAYELLEEYGLPRGLLPLGVTEYGLNRDTGFFWVKLKSPCEFRFEGYLVSYDSEITGYIEKGKIKNLTGVKVKELFLWVP   80 (110)
T ss_dssp             --HHHHHHHS-TT-TTTSSS-EEEE-TTT-SEEEE-SS-EEEESTTSEEEE-SEEEEEE-SS-EEEEES-EEE-SSSEES
T ss_pred             CHHHhHHHcCCCCCcCCCCceEEEEecCCcEEEEEecCCEEEEEEEEEEEEcCeEEEEECCCcCccccCEEEEEEEEEee
Confidence            6899999999999999999999999985 9999999999999997 7999999999999999999999999999999999


Q ss_pred             eeEEEecCCCCCcEEEEEceeeeeecccccccC
Q 030550          108 VDEIRVDLPPSDSIYFQVGIINKKLDVGQFETV  140 (175)
Q Consensus       108 V~eI~vd~~~~~~I~F~vG~isksfP~s~F~~~  140 (175)
                      |++|.+   ++++|+|++|.++++||+++|++|
T Consensus        81 v~~i~~---~~~~i~F~~g~~s~sfp~~~F~~s  110 (110)
T PF04398_consen   81 VTEISV---DGDKIYFKVGGISKSFPVSAFEES  110 (110)
T ss_dssp             ---BEE----SSSEE-TTSSSS----TTTTSS-
T ss_pred             EEEEEE---cCCEEEEEEeeEeccCCHHHhccC
Confidence            999999   499999999999999999999975

; PDB: 1YDU_A.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	175
1ydu_A	170	Solution Nmr Structure Of At5g01610, An Arabidopsis		1e-04

>pdb|1YDU|A Chain A, Solution Nmr Structure Of At5g01610, An Arabidopsis Thaliana Protein Containing Duf538 Domain Length = 170

Iteration: 1
 Score = 42.7 bits (99), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 27/98 (27%), Positives = 51/98 (52%), Gaps = 7/98 (7%)
Query: 33  EILPKFGLPQGLLPSNVVSYTLQDD-GLFTVELSSECYVEFD--YLVYYEKTVTGKISIG 89
           E+L ++ LP G+ P +  +Y   ++    TV + S C V +    ++ +  TVTG +  G
Sbjct: 56  ELLKEYDLPIGIFPGDATNYEFDEETKKLTVLIPSICEVGYKDSSVLKFTTTVTGHLEKG 115
Query: 90  SISNLKGIQVKRFLFWFDVDEIRVDLPPSDSIYFQVGI 127
            +++++GI+ K  + W  V  I  D   +  +YF  G+
Sbjct: 116 KLTDVEGIKTK-VMIWVKVTSISTD---ASKVYFTAGM 149

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	175
1ydu_A	170	AT5G01610; DUF538, structural genomics, protein st	8e-37

>1ydu_A AT5G01610; DUF538, structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG unknown function; NMR {Arabidopsis thaliana} SCOP: b.162.1.1 Length = 170

 Score =  124 bits (312), Expect = 8e-37
 Identities = 28/126 (22%), Positives = 56/126 (44%), Gaps = 9/126 (7%)

Query: 21  SLSSDPSPPTVYEILPKFGLPQGLLPSNVVSYTL-QDDGLFTVELSSECYVEFD--YLVY 77
            +        + E+L ++ LP G+ P +  +Y   ++    TV + S C V +    ++ 
Sbjct: 45  KIKGKM-QKPLPELLKEYDLPIGIFPGDATNYEFDEETKKLTVLIPSICEVGYKDSSVLK 103

Query: 78  YEKTVTGKISIGSISNLKGIQVKRFLFWFDVDEIRVDLPPSDSIYFQVGIINKKLDVGQF 137
           +  TVTG +  G +++++GI+ K  + W  V  I  D   +  +YF  G + K      +
Sbjct: 104 FTTTVTGHLEKGKLTDVEGIKTK-VMIWVKVTSISTD---ASKVYFTAG-MKKSRSRDAY 158

Query: 138 ETVHSC 143
               + 
Sbjct: 159 GVQRNG 164

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	175
1ydu_A	170	AT5G01610; DUF538, structural genomics, protein st	100.0

>1ydu_A AT5G01610; DUF538, structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG unknown function; NMR {Arabidopsis thaliana} SCOP: b.162.1.1

Probab=100.00  E-value=2.2e-42  Score=280.07  Aligned_cols=115  Identities=24%  Similarity=0.547  Sum_probs=110.1

Q ss_pred             CCCCcHHHhhhhcCCCCCCCCCCceeEEEec-CccEEEEEcCeeEEEEe--EEEEEccEEEEEEecCccccccceeEEEE
Q 030550           26 PSPPTVYEILPKFGLPQGLLPSNVVSYTLQD-DGLFTVELSSECYVEFD--YLVYYEKTVTGKISIGSISNLKGIQVKRF  102 (175)
Q Consensus        26 ~~~~ta~elL~~~GLP~GLLP~~V~~y~l~~-~G~f~v~l~~~C~~~f~--~~v~Y~~~ItG~i~~gkI~~L~GVkvK~l  102 (175)
                      .+++++||||++||||+||||++|++|++|+ +|.|||+|+++|+|+|+  |+|+|+++|||+|++|||++|+|||+|+|
T Consensus        49 ~~~~ta~elL~e~gLP~GLLP~~V~~Y~l~~~tG~f~V~l~~~C~~~f~~~~~v~Y~~~VtG~l~~GkI~~L~GVk~K~L  128 (170)
T 1ydu_A           49 KMQKPLPELLKEYDLPIGIFPGDATNYEFDEETKKLTVLIPSICEVGYKDSSVLKFTTTVTGHLEKGKLTDVEGIKTKVM  128 (170)
T ss_dssp             TTTSSCHHHHHHHSCTTCTTTSSSCEEEECTTTCSEEEECSSCEEEESTTSSEEEECSEEEEEECSSCEEEEESCEEESS
T ss_pred             cccccHHHHHHHcCCCCCcCCCCCeEEEEECCCcEEEEEeCCCEEEEecCccEEEEcCEEEEEEcCCcCccccCEEEEEE
Confidence            5788999999999999999999999999996 79999999999999995  89999999999999999999999999999


Q ss_pred             EeeeeeeEEEecCCCCCcEEEEEceeeeeecccccccCCCCCC
Q 030550          103 LFWFDVDEIRVDLPPSDSIYFQVGIINKKLDVGQFETVHSCRD  145 (175)
Q Consensus       103 f~Wv~V~eI~vd~~~~~~I~F~vG~isksfP~s~F~~~p~C~~  145 (175)
                       +|++|++|.|+   +++|+|++|+ +++||+++|+.+|+|..
T Consensus       129 -lWv~V~eI~v~---~~kI~F~vGi-~ksfp~saFe~~~~c~~  166 (170)
T 1ydu_A          129 -IWVKVTSISTD---ASKVYFTAGM-KKSRSRDAYGVQRNGLR  166 (170)
T ss_dssp             -SEESCCCBEEC---SSSEECTTSS-SSCCCHHHHSSCCCCCC
T ss_pred             -EEeeEEEEEEe---CCEEEEEEcC-cccccHHHhcCCcCCcc
Confidence             99999999994   8999999995 99999999999999984

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	175
d1ydua1	169	b.162.1.1 (A:2-170) Hypothetical protein At5g01610	7e-37

>d1ydua1 b.162.1.1 (A:2-170) Hypothetical protein At5g01610 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 169

class: All beta proteins
fold: At5g01610-like
superfamily: At5g01610-like
family: At5g01610-like
domain: Hypothetical protein At5g01610
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score =  123 bits (310), Expect = 7e-37
 Identities = 29/125 (23%), Positives = 57/125 (45%), Gaps = 9/125 (7%)

Query: 22  LSSDPSPPTVYEILPKFGLPQGLLPSNVVSYTL-QDDGLFTVELSSECYVEFD--YLVYY 78
           +      P + E+L ++ LP G+ P +  +Y   ++    TV + S C V +    ++ +
Sbjct: 45  IKGKMQKP-LPELLKEYDLPIGIFPGDATNYEFDEETKKLTVLIPSICEVGYKDSSVLKF 103

Query: 79  EKTVTGKISIGSISNLKGIQVKRFLFWFDVDEIRVDLPPSDSIYFQVGIINKKLDVGQFE 138
             TVTG +  G +++++GI+ K  + W  V  I  D   +  +YF  G + K      + 
Sbjct: 104 TTTVTGHLEKGKLTDVEGIKTK-VMIWVKVTSISTD---ASKVYFTAG-MKKSRSRDAYG 158

Query: 139 TVHSC 143
              + 
Sbjct: 159 VQRNG 163

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	175
d1ydua1	169	Hypothetical protein At5g01610 {Thale cress (Arabi	100.0

>d1ydua1 b.162.1.1 (A:2-170) Hypothetical protein At5g01610 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All beta proteins
fold: At5g01610-like
superfamily: At5g01610-like
family: At5g01610-like
domain: Hypothetical protein At5g01610
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=100.00  E-value=8.3e-42  Score=274.34  Aligned_cols=114  Identities=25%  Similarity=0.562  Sum_probs=106.6

Q ss_pred             CCCCcHHHhhhhcCCCCCCCCCCceeEEEec-CccEEEEEcCeeEEEEe--EEEEEccEEEEEEecCccccccceeEEEE
Q 030550           26 PSPPTVYEILPKFGLPQGLLPSNVVSYTLQD-DGLFTVELSSECYVEFD--YLVYYEKTVTGKISIGSISNLKGIQVKRF  102 (175)
Q Consensus        26 ~~~~ta~elL~~~GLP~GLLP~~V~~y~l~~-~G~f~v~l~~~C~~~f~--~~v~Y~~~ItG~i~~gkI~~L~GVkvK~l  102 (175)
                      -++++++|||++||||+||||++|++|++|+ +|.|||+|+++|+|+|+  |+|+|+++|||+|++|+|++|+|||+| +
T Consensus        48 k~~k~l~ELL~eygLP~GLLP~~V~~Y~l~~~TG~f~V~l~~~C~~~f~~sy~v~Y~~~VtG~ls~Gki~~L~GVkvK-l  126 (169)
T d1ydua1          48 KMQKPLPELLKEYDLPIGIFPGDATNYEFDEETKKLTVLIPSICEVGYKDSSVLKFTTTVTGHLEKGKLTDVEGIKTK-V  126 (169)
T ss_dssp             TTTSSCHHHHHHHSCTTCTTTSSSCEEEECTTTCSEEEECSSCEEEESTTSSEEEECSEEEEEECSSCEEEEESCEEE-S
T ss_pred             CCCCCHHHHHHhcCCCCccCCCCceEEEEECCCcEEEEEeCCCEEEEecCceEEEEcCEEEEEEcCCcCccccceEEE-E
Confidence            4677899999999999999999999999997 59999999999999995  899999999999999999999999999 7


Q ss_pred             EeeeeeeEEEecCCCCCcEEEEEceeeeeecccccccCCCCC
Q 030550          103 LFWFDVDEIRVDLPPSDSIYFQVGIINKKLDVGQFETVHSCR  144 (175)
Q Consensus       103 f~Wv~V~eI~vd~~~~~~I~F~vG~isksfP~s~F~~~p~C~  144 (175)
                      |+|++|++|.+|   +++|+|++| ++|+||+++|+.+++|.
T Consensus       127 flWv~V~eI~vd---~~kI~F~vG-I~KsfP~daFE~prdg~  164 (169)
T d1ydua1         127 MIWVKVTSISTD---ASKVYFTAG-MKKSRSRDAYGVQRNGL  164 (169)
T ss_dssp             SSEESCCCBEEC---SSSEECTTS-SSSCCCHHHHSSCCCCC
T ss_pred             EEEEEEEEEEEc---CCeEEEEec-ccccCCHHHccCCccce
Confidence            899999999997   899999999 69999999998766554