Citrus Sinensis ID: 030563

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-----
Protein Sequence
MKNTIRCCISCILPCGALDVIRIIHSNGRVEEISGTIKAREIMKAHPKHVLKKPSSPSSDDGVVPKIVVVPPDAELQRGKIYFLIPVPATTGDHQKSRSRSSSTKKKRREQSQSNANNNTNNVNSISMTTNLLVSDQYLSEILSEKLSTQRDRRRGRVGVWRPHLESICESPSDV
Secondary Structure (PSIPRED)
cccccccccccccccccccEEEEEcccccEEEEcccccHHHHHHHccccEEEcccccccccccccEEEEcccccccccccEEEEcccccccccccccccccccHHHHHHHHccccccccccccccccccccccccHHHHHHHHHHHHHccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccEEEEEEEEcccccccEEEEEEccccEEEcccccEHHHHHHHccccEEEcccccccccccEEEEEEEccHHHHcccEEEEEEEccccccHHccccccccHHHccccccccccccccccccccccccccccccHHHHHHHHHHHHHcccccccccccEccccccHcccccccc
Coil and Loop (DISEMBL)
mkntircciscilpcgalDVIRIIHSNGRVEEISGTIKAREIMkahpkhvlkkpsspssddgvvpkivvvppdaelqrgkiyflipvpattgdhqksrsrssstkKKRREQSQsnannntnnvnSISMTTNLLVSDQYLSEILSEKLstqrdrrrgrvgvwrphlesicespsdv
Flexible Loop (DISEMBL)
MKNTIRCCISCILPCGALDVIRIIHSNGRVEEISGTIKAREIMKAhpkhvlkkpsspssddgvvPKIVVVppdaelqrgKIYFLipvpattgdhqksrsrssstkkkrreqsqsnannntnnvnsISMTTNLLVSDQYLSEILseklstqrdrrrgrvgvwrphlesicespsdv
Low Complexity Region (SEG)
MKNTIRCCISCILPCGALDVIRIIHSNGRVEEISGTIKAREIMKAHPKHVLkkpsspssddGVVPKIVVVPPDAELQRGKIYFLIPVPATTGDHqksrsrssstkkkrreqsqsnannntnnvnsismttnLLVSDQYLSEILSEKLSTQrdrrrgrvgvwrPHLESICESPSDV
Disordered region (IsUnstruct)
***TIRCCISCILPCGALDVIRIIHSNGRVEEISGTIKA***********************VVPKIVVVPPDAELQRGKIYFLIPVP*******************************************LLVS**Y*************************************
Disordered Region (DISOPRED)
*K***RCCISCILPCGALDVIRIIHSNGRVEEISGTIKAREIMKAHPKHVLKKPSSP*********IVVVPPDAELQRGKIYFLIP********************************************************************************SIC******
Disordered Region (DISEMBL)
MKNTIRCCISCILPCGALDVIRIIHSNGRVEEISGTIKAREIMKA****************GVVPKIVVVPPDAELQRGKIYFLIPVPA**************************ANNNTNNVNSISMTTNLLVSDQYLSEILSEK**********RVGVWRPHLES********
Disordered Region (DISPRO)
**NTIRCCISCILPCGALDVIRIIHSNGRVEEISGTIKAREIMKAHPKHVLKKPSSPSSDDGVVPKIVVVPPDAELQRGKIYFLIPVPAT****************************************************LSEKL****************************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MKNTIRCCISCILPCGALDVIRIIHSNGRVEEISGTIKAREIMKAHPKHVLKKPSSPSSDDGVVPKIVVVPPDAELQRGKIYFLIPVPATTGDHQKSRSRSSSTKKKRREQSQSNANNNTNNVNSISMTTNLLVSDQYLSEILSEKLSTQRDRRRGRVGVWRPHLESICESPSDV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	175
224114666	174	predicted protein [Populus trichocarpa]	0.965	0.971	0.76	3e-68
224076958	178	predicted protein [Populus trichocarpa]	0.988	0.971	0.735	4e-57
356549226	195	PREDICTED: uncharacterized protein LOC10	0.988	0.887	0.738	6e-55
356528324	175	PREDICTED: uncharacterized protein LOC10	0.971	0.971	0.651	4e-54
449433750	167	PREDICTED: uncharacterized protein LOC10	0.948	0.994	0.607	2e-53
297851342	193	hypothetical protein ARALYDRAFT_890439 [	0.971	0.880	0.595	4e-53
18396990	193	uncharacterized protein [Arabidopsis tha	0.971	0.880	0.590	7e-53
356555420	176	PREDICTED: uncharacterized protein LOC10	0.982	0.977	0.722	7e-52
356510967	175	PREDICTED: uncharacterized protein LOC10	0.948	0.948	0.651	2e-51
51969214	189	unknown protein [Arabidopsis thaliana]	0.948	0.878	0.586	2e-51

>gi|224114666|ref|XP_002316823.1| predicted protein [Populus trichocarpa] gi|222859888|gb|EEE97435.1| predicted protein [Populus trichocarpa]

 Score =  263 bits (671), Expect = 3e-68,   Method: Compositional matrix adjust.
 Identities = 133/175 (76%), Positives = 146/175 (83%), Gaps = 6/175 (3%)

Query: 1   MKNTIRCCISCILPCGALDVIRIIHSNGRVEEISGTIKAREIMKAHPKHVLKKPSSPSSD 60
           MKNTIRCCISCILPCGALDVIRI+HSNGRVEEISGTI+A EIMKA+PKH+LKKPSSP SD
Sbjct: 1   MKNTIRCCISCILPCGALDVIRIVHSNGRVEEISGTIRASEIMKAYPKHILKKPSSP-SD 59

Query: 61  DGVVPKIVVVPPDAELQRGKIYFLIPVPATTGDHQKSRSRSSSTKKKRREQSQSNANNNT 120
           DG VPKIV+VPPDAELQRGKIYFL+P P T        S+ S  +KKRRE S +N +  +
Sbjct: 60  DGFVPKIVIVPPDAELQRGKIYFLMPAPPTQETKSSRSSKGSGMRKKRREISINNRSTES 119

Query: 121 NN-----VNSISMTTNLLVSDQYLSEILSEKLSTQRDRRRGRVGVWRPHLESICE 170
           NN      NSIS+TTNLL+SDQYLSEILSEKLSTQRDRRRGR GVWRPHLESI E
Sbjct: 120 NNSSHIVTNSISLTTNLLISDQYLSEILSEKLSTQRDRRRGRAGVWRPHLESITE 174

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224076958|ref|XP_002305067.1| predicted protein [Populus trichocarpa] gi|222848031|gb|EEE85578.1| predicted protein [Populus trichocarpa]

 Score =  225 bits (574), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 131/178 (73%), Positives = 148/178 (83%), Gaps = 5/178 (2%)

Query: 1   MKNTIRCCISCILPCGALDVIRIIHSNGRVEEISGTIKAREIMKAHPKHVLKKPSSPSSD 60
           MK+TIRCCISCILPCGALDVIRI+HSNGRVEEISGT++A EIMKA+PKH+LKKPS+P SD
Sbjct: 1   MKDTIRCCISCILPCGALDVIRIVHSNGRVEEISGTVRACEIMKAYPKHILKKPSAP-SD 59

Query: 61  DGVVPKIVVVPPDAELQRGKIYFLIPVPATTGDHQKSRSRSSSTKKKRRE----QSQSNA 116
           DGVVPKIV+VPPDAELQRGKIYFL+P P          SR S T+KKRRE        + 
Sbjct: 60  DGVVPKIVIVPPDAELQRGKIYFLMPAPPAQEAKSSRSSRGSGTRKKRREISNNNRSESN 119

Query: 117 NNNTNNVNSISMTTNLLVSDQYLSEILSEKLSTQRDRRRGRVGVWRPHLESICESPSD 174
           N+  +  +SISMTTNLL+SDQYLSEILSEK+STQRDRRRGRVGVWRPHLESI E+P D
Sbjct: 120 NSTHHGTDSISMTTNLLISDQYLSEILSEKISTQRDRRRGRVGVWRPHLESISEAPYD 177

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356549226|ref|XP_003542998.1| PREDICTED: uncharacterized protein LOC100778347 [Glycine max]

 Score =  218 bits (556), Expect = 6e-55,   Method: Compositional matrix adjust.
 Identities = 130/176 (73%), Positives = 149/176 (84%), Gaps = 3/176 (1%)

Query: 1   MKNTIRCCISCILPCGALDVIRIIHSNGRVEEISGTIKAREIMKAHPKHVLKKPSSPSSD 60
           M+N+IRCCISCILPCGALDVIRI+HSNGRVEEISGTIKA EIMKAHPKHVLKKPSSPS+ 
Sbjct: 15  MRNSIRCCISCILPCGALDVIRIVHSNGRVEEISGTIKASEIMKAHPKHVLKKPSSPSTQ 74

Query: 61  DGVVPKIVVVPPDAELQRGKIYFLIPVPATTGDHQKS-RSRSSSTKKKRREQSQSNANNN 119
           DGVVPKIVVVPPDA+LQRGKIYFL+P+P+   +   S R RSSS KKKR+E    N NNN
Sbjct: 75  DGVVPKIVVVPPDADLQRGKIYFLMPLPSPPSEKNSSHRQRSSSGKKKRKEHHNDNRNNN 134

Query: 120 TNNVNSISMT-TNLLVSDQ-YLSEILSEKLSTQRDRRRGRVGVWRPHLESICESPS 173
            NN N+ + +  NLL S++ YL+E+LS+K+STQRDR RGRV VWRPHLESI ESPS
Sbjct: 135 NNNNNNNATSVANLLASNERYLTEVLSDKVSTQRDRTRGRVAVWRPHLESISESPS 190

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356528324|ref|XP_003532754.1| PREDICTED: uncharacterized protein LOC100785552 [Glycine max]

 Score =  215 bits (548), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 116/178 (65%), Positives = 140/178 (78%), Gaps = 8/178 (4%)

Query: 1   MKNTIRCCISCILPCGALDVIRIIHSNGRVEEISGTIKAREIMKAHPKHVLKKP-SSPSS 59
           M+N IRCCISCI PCGALDVIRI+HSNGRVEEISGT+KA ++MKAHPKHVLKKP SSP+ 
Sbjct: 1   MRNCIRCCISCIFPCGALDVIRIVHSNGRVEEISGTVKASDVMKAHPKHVLKKPCSSPAD 60

Query: 60  DDGV---VPKIVVVPPDAELQRGKIYFLIPVPATTGDHQKSRSRSSSTKKKRREQSQSNA 116
             G+   V KIVVVPPDAELQRGKIYFL            ++ + +  +KK+R++ +   
Sbjct: 61  AAGISGGVHKIVVVPPDAELQRGKIYFL----MPLPPTPPTQEKKNRQRKKKRKEHRERT 116

Query: 117 NNNTNNVNSISMTTNLLVSDQYLSEILSEKLSTQRDRRRGRVGVWRPHLESICESPSD 174
            NNTNN + I+  T+LLVSD+YL++ILSEK+S+QRDRRRGRV VWRPHLESI ESPSD
Sbjct: 117 MNNTNNASMITSMTSLLVSDRYLNDILSEKVSSQRDRRRGRVAVWRPHLESIYESPSD 174

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449433750|ref|XP_004134660.1| PREDICTED: uncharacterized protein LOC101214777 [Cucumis sativus] gi|449479227|ref|XP_004155541.1| PREDICTED: uncharacterized protein LOC101227724 [Cucumis sativus]

 Score =  213 bits (543), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 107/176 (60%), Positives = 134/176 (76%), Gaps = 10/176 (5%)

Query: 1   MKNTIRCCISCILPCGALDVIRIIHSNGRVEEISGTIKAREIMKAHPKHVLKKPSSPSSD 60
           MKN IRCC+SCILPCG+LDVIRI+H +G V+EI+G+I+A ++MKA+PKHVLKKPSSP+SD
Sbjct: 1   MKNAIRCCLSCILPCGSLDVIRIVHCDGHVQEIAGSIRASDVMKANPKHVLKKPSSPTSD 60

Query: 61  DGVVPKIVVVPPDAELQRGKIYFLIPVPATTGDHQKSRSRSSSTKKKRREQSQSNANNNT 120
           D VVPKIV++PPDAELQRGKIYFL+P+P          +      K   ++ +       
Sbjct: 61  DRVVPKIVILPPDAELQRGKIYFLMPLPP---------APEKPRSKSLSKKKKKELPLPG 111

Query: 121 NNVNSISMTTNLLVSDQYLSEILSEKLST-QRDRRRGRVGVWRPHLESICESPSDV 175
             V S    TNL+VSD+YLSEILSEKL+T Q+D+RRGRVGVWRPHLESI E P+D+
Sbjct: 112 TGVGSGISVTNLVVSDRYLSEILSEKLTTVQKDKRRGRVGVWRPHLESISEFPTDL 167

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297851342|ref|XP_002893552.1| hypothetical protein ARALYDRAFT_890439 [Arabidopsis lyrata subsp. lyrata] gi|297339394|gb|EFH69811.1| hypothetical protein ARALYDRAFT_890439 [Arabidopsis lyrata subsp. lyrata]

 Score =  212 bits (540), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 112/188 (59%), Positives = 135/188 (71%), Gaps = 18/188 (9%)

Query: 1   MKNTIRCCISCILPCGALDVIRIIHSNGRVEEISGTIKAREIMKAHPKHVLKKPSSPSSD 60
           MK TIRCCI+CILPCGALDVIRI+HSNG VEEISGTI AREIMKAHPKHVLKKPSSP SD
Sbjct: 1   MKETIRCCIACILPCGALDVIRIVHSNGHVEEISGTITAREIMKAHPKHVLKKPSSPPSD 60

Query: 61  DG-----VVPKIVVVPPDAELQRGKIYFLIPVP-----ATTGDHQKSRSRSSSTKKKRRE 110
                     KIV+VPP+AELQRGKIYFL+P       A  G  ++ +S + +   K+R 
Sbjct: 61  HDERDVISATKIVIVPPEAELQRGKIYFLMPANKSDKCAGGGKIRREKSNAINAAVKKRS 120

Query: 111 QSQ-------SNANNNTNNVNSISMTTNLLV-SDQYLSEILSEKLSTQRDRRRGRVGVWR 162
           Q++          N   N+V   +   +LL+ SD+YL+EILSEK++TQ+DRR+GRVGVWR
Sbjct: 121 QNRRQHRDGDEKCNGENNDVKDKNYENDLLISSDRYLTEILSEKVATQKDRRKGRVGVWR 180

Query: 163 PHLESICE 170
           PHLESI E
Sbjct: 181 PHLESISE 188

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18396990|ref|NP_564323.1| uncharacterized protein [Arabidopsis thaliana] gi|9502420|gb|AAF88119.1|AC021043_12 Unknown protein [Arabidopsis thaliana] gi|15529248|gb|AAK97718.1| At1g29190/F28N24_12 [Arabidopsis thaliana] gi|16974401|gb|AAL31126.1| At1g29190/F28N24_12 [Arabidopsis thaliana] gi|21593465|gb|AAM65432.1| unknown [Arabidopsis thaliana] gi|332192936|gb|AEE31057.1| uncharacterized protein [Arabidopsis thaliana]

 Score =  211 bits (538), Expect = 7e-53,   Method: Compositional matrix adjust.
 Identities = 111/188 (59%), Positives = 136/188 (72%), Gaps = 18/188 (9%)

Query: 1   MKNTIRCCISCILPCGALDVIRIIHSNGRVEEISGTIKAREIMKAHPKHVLKKPSSPSSD 60
           MK TIRCCI+CILPCGALDVIRI+HSNG VEEISGTI A EIMKAHPKHVLKKPSSP+SD
Sbjct: 1   MKETIRCCIACILPCGALDVIRIVHSNGHVEEISGTITASEIMKAHPKHVLKKPSSPTSD 60

Query: 61  DG-----VVPKIVVVPPDAELQRGKIYFLIPVP-----ATTGDHQKSRSRSSSTKKKR-- 108
                     KIV+VPP+AELQRGKIYFL+P       A  G  ++ +S +++  KKR  
Sbjct: 61  HDERDVISATKIVIVPPEAELQRGKIYFLMPATKSDKCAGGGKIRREKSNANAVVKKRSQ 120

Query: 109 -----REQSQSNANNNTNNVNSISMTTNLLV-SDQYLSEILSEKLSTQRDRRRGRVGVWR 162
                R+  +      +N+V   +   +LL+ SD+YL+EILSEK++TQ+DRR+GRVGVWR
Sbjct: 121 YRRQHRDGDEKCNGGESNDVKDKNYEKDLLISSDRYLTEILSEKVATQKDRRKGRVGVWR 180

Query: 163 PHLESICE 170
           PHLESI E
Sbjct: 181 PHLESISE 188

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356555420|ref|XP_003546030.1| PREDICTED: uncharacterized protein LOC100775708 [Glycine max]

 Score =  208 bits (529), Expect = 7e-52,   Method: Compositional matrix adjust.
 Identities = 125/173 (72%), Positives = 148/173 (85%), Gaps = 1/173 (0%)

Query: 1   MKNTIRCCISCILPCGALDVIRIIHSNGRVEEISGTIKAREIMKAHPKHVLKKPSSPSSD 60
           M+N+IRCCISCILPCGALDVIRI+HSNGRVEEISGTIKA ++MKAHPKHVLKKPSSPS+ 
Sbjct: 1   MRNSIRCCISCILPCGALDVIRIVHSNGRVEEISGTIKASDVMKAHPKHVLKKPSSPSTQ 60

Query: 61  DGVVPKIVVVPPDAELQRGKIYFLIPVPATTGDHQKSRSRSSSTKKKRREQSQSNANNNT 120
           DGVVPKIVVVPPDAELQRGKIYFL+P+P+   +      RSSS+ KK+R++  S+  N  
Sbjct: 61  DGVVPKIVVVPPDAELQRGKIYFLMPLPSPPSEKNNHLQRSSSSGKKKRKEHHSDNRNIN 120

Query: 121 NNVNSISMTTNLLVSDQYLSEILSEKLSTQRDRRRGRVGVWRPHLESICESPS 173
           NN N+IS+   L+ +++YL+EILSEK+STQRDRRRGRV VWRPHLESI ESPS
Sbjct: 121 NN-NAISVANLLVSNERYLTEILSEKVSTQRDRRRGRVAVWRPHLESISESPS 172

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356510967|ref|XP_003524204.1| PREDICTED: uncharacterized protein LOC100807034 [Glycine max]

 Score =  207 bits (526), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 116/178 (65%), Positives = 141/178 (79%), Gaps = 12/178 (6%)

Query: 1   MKNTIRCCISCILPCGALDVIRIIHSNGRVEEISGTIKAREIMKAHPKHVLKKPSSPSSD 60
           M+N IRCCISCILPCGALDVIRI+HSNGRVEEI GTIKA ++MKAHPKHVLKKP S ++D
Sbjct: 1   MRNCIRCCISCILPCGALDVIRIVHSNGRVEEIGGTIKASDVMKAHPKHVLKKPCSSAAD 60

Query: 61  DG------VVPKIVVVPPDAELQRGKIYFLIPVPATTGDHQKSRSRSSSTKKKRREQSQS 114
                    VPKIVVVPPDAELQRGKIYFL+P+P +       + ++   +KK++++ + 
Sbjct: 61  AAEGGVGGGVPKIVVVPPDAELQRGKIYFLMPLPPS-----PPQEKNQQRRKKKKKEHRE 115

Query: 115 NANNNTNNVNSISMTTNLLVSDQYLSEILSEKLSTQRDRRRGRVGVWRPHLESICESP 172
              NNTN   ++SMT+ LLVSD+YL++ILSEK+STQRDRRRGRV VWRPHLESI ESP
Sbjct: 116 RTRNNTNVSTTMSMTS-LLVSDRYLNDILSEKVSTQRDRRRGRVAVWRPHLESISESP 172

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|51969214|dbj|BAD43299.1| unknown protein [Arabidopsis thaliana]

 Score =  206 bits (525), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 108/184 (58%), Positives = 133/184 (72%), Gaps = 18/184 (9%)

Query: 5   IRCCISCILPCGALDVIRIIHSNGRVEEISGTIKAREIMKAHPKHVLKKPSSPSSDDG-- 62
           IRCCI+CILPCGALDVIRI+HSNG VEEISGTI A EIMKAHPKHVLKKPSSP+SD    
Sbjct: 1   IRCCIACILPCGALDVIRIVHSNGHVEEISGTITASEIMKAHPKHVLKKPSSPTSDHDER 60

Query: 63  ---VVPKIVVVPPDAELQRGKIYFLIPVP-----ATTGDHQKSRSRSSSTKKKR------ 108
                 KIV+VPP+AELQRGKIYFL+P       A  G  ++ +S +++  KKR      
Sbjct: 61  DVISATKIVIVPPEAELQRGKIYFLMPATKSDKCAGGGKIRREKSNANAVAKKRSQYRRQ 120

Query: 109 -REQSQSNANNNTNNVNSISMTTNLLV-SDQYLSEILSEKLSTQRDRRRGRVGVWRPHLE 166
            R+  +      +N+V   +   +LL+ SD+YL+EILSEK++TQ+DRR+GRVGVWRPHLE
Sbjct: 121 HRDGDEKCNGGESNDVKDKNYEKDLLISSDRYLTEILSEKVATQKDRRKGRVGVWRPHLE 180

Query: 167 SICE 170
           SI E
Sbjct: 181 SISE 184

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	175
TAIR|locus:505006153	193	AT1G29195 "AT1G29195" [Arabido	0.52	0.471	0.683	2.7e-36
TAIR|locus:2060859	177	AT2G30230 "AT2G30230" [Arabido	0.468	0.463	0.534	3.9e-24
TAIR|locus:2007377	169	AT1G06980 "AT1G06980" [Arabido	0.468	0.485	0.558	1.1e-21

TAIR|locus:505006153 AT1G29195 "AT1G29195" [Arabidopsis thaliana (taxid:3702)]

 Score = 318 (117.0 bits), Expect = 2.7e-36, Sum P(2) = 2.7e-36
 Identities = 67/98 (68%), Positives = 73/98 (74%)

Query:     1 MKNTIRCCISCILPCGALDVIRIIHSNGRVEEISGTIKAREIMKAHPKHVL---XXXXXX 57
             MK TIRCCI+CILPCGALDVIRI+HSNG VEEISGTI A EIMKAHPKHVL         
Sbjct:     1 MKETIRCCIACILPCGALDVIRIVHSNGHVEEISGTITASEIMKAHPKHVLKKPSSPTSD 60

Query:    58 XXXXGVVP--KIVVVPPDAELQRGKIYFLIPVPATTGD 93
                  V+   KIV+VPP+AELQRGKIYFL+P  AT  D
Sbjct:    61 HDERDVISATKIVIVPPEAELQRGKIYFLMP--ATKSD 96

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=IDA

TAIR|locus:2060859 AT2G30230 "AT2G30230" [Arabidopsis thaliana (taxid:3702)]

 Score = 249 (92.7 bits), Expect = 3.9e-24, Sum P(2) = 3.9e-24
 Identities = 46/86 (53%), Positives = 65/86 (75%)

Query:     1 MKNTIRCCISCILPCGALDVIRIIHSNGRVEEISGTIKAREIMKAHPKHVLXXXXXXXXX 60
             M N++RCC++C+LPCGALD+IRI+H NG V+EI+  + A EI++A+P HVL         
Sbjct:     1 MGNSLRCCLACVLPCGALDLIRIVHLNGHVDEITSPMTAGEILQANPNHVLSKPCSQ--- 57

Query:    61 XGVVPKIVVVPPDAELQRGKIYFLIP 86
              GVV KI+++ P++EL+RG IYFLIP
Sbjct:    58 -GVVRKILILSPESELKRGSIYFLIP 82

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2007377 AT1G06980 "AT1G06980" [Arabidopsis thaliana (taxid:3702)]

 Score = 253 (94.1 bits), Expect = 1.1e-21, P = 1.1e-21
 Identities = 48/86 (55%), Positives = 66/86 (76%)

Query:     1 MKNTIRCCISCILPCGALDVIRIIHSNGRVEEISGTIKAREIMKAHPKHVLXXXXXXXXX 60
             M N++RCC++C+LPCGALD+IRI+H NG VEEI+ +I A EI++A+P HVL         
Sbjct:     1 MGNSLRCCLACVLPCGALDLIRIVHLNGYVEEITRSITAGEILQANPNHVLSKPCSQ--- 57

Query:    61 XGVVPKIVVVPPDAELQRGKIYFLIP 86
              GVV KI+++ P++EL+RG IYFLIP
Sbjct:    58 -GVVRKILILSPESELKRGSIYFLIP 82


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.321   0.138   0.413    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      175       116   0.00091  102 3  11 22  0.47    30
                                                     29  0.45    32


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  3
  No. of states in DFA:  520 (55 KB)
  Total size of DFA:  112 KB (2076 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  9.45u 0.14s 9.59t   Elapsed:  00:00:00
  Total cpu time:  9.45u 0.14s 9.59t   Elapsed:  00:00:00
  Start:  Sat May 11 05:51:35 2013   End:  Sat May 11 05:51:35 2013

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	175
pfam14009	181	pfam14009, DUF4228, Domain of unknown function (DU	6e-36

>gnl|CDD|222492 pfam14009, DUF4228, Domain of unknown function (DUF4228)

 Score =  122 bits (309), Expect = 6e-36
 Identities = 52/192 (27%), Positives = 83/192 (43%), Gaps = 33/192 (17%)

Query: 1   MKNTIRCCISCILPCGALDVIRIIHSNGRVEEISGTIKAREIMKAHPKHVLKKPSSPSSD 60
           M N + CC++   P GA   ++++H +G+V E S  + A E+M  +P H +    S    
Sbjct: 1   MGNCLSCCLA---PSGAAATVKVVHPDGKVREYSRPVTAAELMLEYPGHFVCDSDSLYIG 57

Query: 61  DGVVPKIVVVPPDAELQRGKIYFLIPV-----PATTGDHQKSRSRSSSTKKKRREQSQSN 115
                +I  +PPD EL+RG++YFL+P           D     S +SS  K    +  S+
Sbjct: 58  R----RIPALPPDDELERGQLYFLLPAERLQSVLAAKDMASLASSASSALKSASAKRSSS 113

Query: 116 AN-----NNTNNVNSISMTTNLLVSDQYLSEILSEKLSTQ------------RDRRRGRV 158
           +       +   V  + +     VS + L E+L E   +             +  R  R 
Sbjct: 114 SRPSPVRKSDGGVVRVKVV----VSKEELEELLEEGSVSASLSELCETPELRKRSRGSRS 169

Query: 159 GVWRPHLESICE 170
             WRP LE+I E
Sbjct: 170 RSWRPKLETISE 181

This domain is found in plants. The function is not known. Length = 181

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	175
PF14009	181	DUF4228: Domain of unknown function (DUF4228)	100.0

>PF14009 DUF4228: Domain of unknown function (DUF4228)

Probab=100.00  E-value=6.1e-38  Score=245.45  Aligned_cols=163  Identities=30%  Similarity=0.521  Sum_probs=113.6

Q ss_pred             CCCcccccccccCCCCCCceeEEEccCCcEEEecCCCcHHHHHHhCCCcEEeCCCCCCCCCCCCcccccCCCCCcccCCC
Q 030563            1 MKNTIRCCISCILPCGALDVIRIIHSNGRVEEISGTIKAREIMKAHPKHVLKKPSSPSSDDGVVPKIVVVPPDAELQRGK   80 (175)
Q Consensus         1 MGN~isCc~~c~l~cgA~d~~rVVh~dG~Vee~~~PvtAaeVM~~~PgH~V~~s~s~~~~~~~~~ri~~L~pDeeL~~G~   80 (175)
                      |||+++||.+   +++...+|||||+||+|++|+.||+|+|||++||+||||+++.+    .+++++.+|+||++|++|+
T Consensus         1 MGn~~~~~~~---~~~~~~~vkvv~~~G~v~~~~~pv~a~evm~~~P~h~v~~~~~~----~~~~~~~~l~~d~~L~~G~   73 (181)
T PF14009_consen    1 MGNCVSCCLA---SSSSAATVKVVHPDGKVEEFKRPVTAAEVMLENPGHFVCDSDSF----RFGRRIKPLPPDEELQPGQ   73 (181)
T ss_pred             CCCccccccc---ccCCCceEEEEcCCCcEEEeCCCcCHHHHHHHCCCCEEeccccc----cCCCcccCCCccCeecCCC
Confidence            9999999886   56778999999999999999999999999999999999999987    8899999999999999999


Q ss_pred             eEEEeeCCCCCccccccccccccccccccccc--cccCCCCC-C-Cccccccc--ccccchhhhHHHHhhhhh-------
Q 030563           81 IYFLIPVPATTGDHQKSRSRSSSTKKKRREQS--QSNANNNT-N-NVNSISMT--TNLLVSDQYLSEILSEKL-------  147 (175)
Q Consensus        81 IYfLLP~~~~~~~k~~~~~~~~~~~~~~~~~~--~~~~~~~~-~-~~~~~~~~--~~~~~~~~~l~~~~~e~~-------  147 (175)
                      ||||||++.++.....................  ...+.... . ......+.  ..+...++.|.+++++..       
T Consensus        74 ~Y~llP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~rvki~isk~el~~~l~~~s~~~~~~~  153 (181)
T PF14009_consen   74 IYFLLPMSRLQSVLSASDMASLASSASSASSSSSARKSSSRPFSRSRSSNGGVVRVKIVISKEELEELLSEGSDEEMLSE  153 (181)
T ss_pred             EEEEEEccccCcccccchhcccccchhhccccccccccccccccccccccCcccccccccCHHHHHHHHhccccchhhhh
Confidence            99999999988653322221110000000000  00000000 0 00001111  234556778888876432       


Q ss_pred             -----cccccCCCCCceeccCccceecc
Q 030563          148 -----STQRDRRRGRVGVWRPHLESICE  170 (175)
Q Consensus       148 -----~~~r~~~~~r~~~wrp~l~si~e  170 (175)
                           ..+..++..+...|||.||||.|
T Consensus       154 ~~~~~~~~~~~~~~~~~~WrP~LesI~E  181 (181)
T PF14009_consen  154 SCRRPRRRSSRRGSRSRSWRPALESIPE  181 (181)
T ss_pred             hhccccccccccCCCCCCccCCCCCcCc
Confidence                 12233567778899999999998

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	175
d1tkea1	62	Threonyl-tRNA synthetase (ThrRS), N-terminal 'addi	81.53

>d1tkea1 d.15.10.1 (A:1-62) Threonyl-tRNA synthetase (ThrRS), N-terminal 'additional' domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: TGS-like
family: TGS domain
domain: Threonyl-tRNA synthetase (ThrRS), N-terminal 'additional' domain
species: Escherichia coli [TaxId: 562]

Probab=81.53  E-value=0.63  Score=29.14  Aligned_cols=25  Identities=8%  Similarity=0.118  Sum_probs=22.6

Q ss_pred             eEEEccCCcEEEecCCCcHHHHHHh
Q 030563           21 IRIIHSNGRVEEISGTIKAREIMKA   45 (175)
Q Consensus        21 ~rVVh~dG~Vee~~~PvtAaeVM~~   45 (175)
                      ++|..|||.+.+|...+|+.||-..
T Consensus         2 ~~ItlPDG~~~~~~~g~T~~diA~~   26 (62)
T d1tkea1           2 PVITLPDGSQRHYDHAVSPMDVALD   26 (62)
T ss_dssp             CEEECTTSCEEECSSCBCHHHHHHH
T ss_pred             CEEECCCCCEEEcCCCCCHHHHHHH
Confidence            4678899999999999999999876