Citrus Sinensis ID: 030588


Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-----
MVSAQISSSSEHDGINETQVVLNVYDLTPVNSYTYWFGFGIFHSGIEVHGKEYGFGAHDFPVSGVFEVEPRSCPGFIYRASILLGRINMPPSEFRTFIECSASEYHGDTYNLISKNCNHFTDDIAWRLTGKHIPGWVNRLARLGTKNSSCFHLPMFVIQQVITANYQIKLLSKKI
ccccccccccccccccccEEEEEEEEcccccccccccccEEEEEEEEEccEEEEEcccccccccEEEEccccccccEEEEEEEcccccccHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHccccccHHHHHHHHHHcccccccccHHHHHHHHHHHHHHcHHHcccc
ccccccccccccccccccEEEEEEEEcccHHHHHHHccEEEEEccEEEEcEEEEEcccccccccEEEEccccccccEEEEEEEEccccccHHHHHHHHHHHHHHcccccHHHHHcccccHHHHHHHHHccccccHHHHHHHHHHHHcccccccccHHHHHEEcccccEHHHEccc
mvsaqissssehdginetQVVLNVydltpvnsytYWFGFGIfhsgievhgkeygfgahdfpvsgvfeveprscpgfIYRASILLgrinmppsefrtfiecsaseyhgdtynlISKNCNHFTDDiawrltgkhipgwVNRLArlgtknsscfhlPMFVIQQVITANYQIKLLSKKI
mvsaqissssehdginETQVVLNVYDLTPVNSYTYWFGFGIFHSGIEVHGKEYGFGAHDFPVSGVFEVEPRSCPGFIYRASILLGRINMPPSEFRTFIECSASEYHGDTYNLISKNCNHFTDDIAWRLTGKHIPGWVNRLARLGTKNSSCFHLPMFVIQQVITANYQIKLLSKKI
MVSAQISSSSEHDGINETQVVLNVYDLTPVNSYTYWFGFGIFHSGIEVHGKEYGFGAHDFPVSGVFEVEPRSCPGFIYRASILLGRINMPPSEFRTFIECSASEYHGDTYNLISKNCNHFTDDIAWRLTGKHIPGWVNRLARLGTKNSSCFHLPMFVIQQVITANYQIKLLSKKI
****************ETQVVLNVYDLTPVNSYTYWFGFGIFHSGIEVHGKEYGFGAHDFPVSGVFEVEPRSCPGFIYRASILLGRINMPPSEFRTFIECSASEYHGDTYNLISKNCNHFTDDIAWRLTGKHIPGWVNRLARLGTKNSSCFHLPMFVIQQVITANYQIKLL****
*********************LNVYDLTPVNSYTYWFGFGIFHSGIEVHGKEYGFGAHDFPVSGVFEVEPRSCPGFIYRASILLGRINMPPSEFRTFIECSASEYHGDTYNLISKNCNHFTDDIAWRLTGKHIPGWVNRLARLGTKNSSCFHLP*********************
*************GINETQVVLNVYDLTPVNSYTYWFGFGIFHSGIEVHGKEYGFGAHDFPVSGVFEVEPRSCPGFIYRASILLGRINMPPSEFRTFIECSASEYHGDTYNLISKNCNHFTDDIAWRLTGKHIPGWVNRLARLGTKNSSCFHLPMFVIQQVITANYQIKLLSKKI
***************NETQVVLNVYDLTPVNSYTYWFGFGIFHSGIEVHGKEYGFGAHDFPVSGVFEVEPRSCPGFIYRASILLGRINMPPSEFRTFIECSASEYHGDTYNLISKNCNHFTDDIAWRLTGKHIPGWVNRLARLGTKNSSCFHLPMFVIQQVITANYQIKLLSKKI
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MVSAQISSSSEHDGINETQVVLNVYDLTPVNSYTYWFGFGIFHSGIEVHGKEYGFGAHDFPVSGVFEVEPRSCPGFIYRASILLGRINMPPSEFRTFIECSASEYHGDTYNLISKNCNHFTDDIAWRLTGKHIPGWVNRLARLGTKNSSCFHLPMFVIQQVITANYQIKLLSKKI
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query175 2.2.26 [Sep-21-2011]
Q93VG8224 DeSI-like protein At4g174 no no 0.731 0.571 0.656 3e-49
Q5PQ09192 Desumoylating isopeptidas N/A no 0.72 0.656 0.430 1e-26
Q9D291194 Desumoylating isopeptidas yes no 0.725 0.654 0.422 2e-26
Q5XIT6194 Desumoylating isopeptidas yes no 0.725 0.654 0.422 2e-26
Q5R456194 Desumoylating isopeptidas yes no 0.725 0.654 0.422 3e-26
Q9BSY9194 Desumoylating isopeptidas yes no 0.725 0.654 0.422 3e-26
A3QRX8194 Desumoylating isopeptidas yes no 0.725 0.654 0.422 3e-26
Q5ZIV7193 Desumoylating isopeptidas no no 0.697 0.632 0.420 4e-26
Q6DC39196 Desumoylating isopeptidas no no 0.697 0.622 0.412 1e-25
Q8X1T0201 DeSI-like protein hag1 OS yes no 0.714 0.621 0.446 6e-23
>sp|Q93VG8|PPDEX_ARATH DeSI-like protein At4g17486 OS=Arabidopsis thaliana GN=At4g17486 PE=2 SV=1 Back     alignment and function desciption
 Score =  194 bits (493), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 84/128 (65%), Positives = 108/128 (84%)

Query: 18  TQVVLNVYDLTPVNSYTYWFGFGIFHSGIEVHGKEYGFGAHDFPVSGVFEVEPRSCPGFI 77
           T V LNVYDLTPVN+Y YWFG GIFHSGIE H  EY +GAH++P SGV+EVEPR+CPGFI
Sbjct: 26  TPVYLNVYDLTPVNNYLYWFGIGIFHSGIEAHNLEYCYGAHEYPTSGVYEVEPRNCPGFI 85

Query: 78  YRASILLGRINMPPSEFRTFIECSASEYHGDTYNLISKNCNHFTDDIAWRLTGKHIPGWV 137
           +R S+LLG  +M  S+FR+++E  + +YHGDTY+LI+KNCNHFT+++  +LTGK IPGW+
Sbjct: 86  FRRSVLLGTTSMSRSDFRSYMEKLSRKYHGDTYHLIAKNCNHFTEEVCLQLTGKPIPGWI 145

Query: 138 NRLARLGT 145
           NRLAR+G+
Sbjct: 146 NRLARVGS 153





Arabidopsis thaliana (taxid: 3702)
EC: 3EC: .EC: 4EC: .EC: -EC: .EC: -
>sp|Q5PQ09|DESI2_XENLA Desumoylating isopeptidase 2 OS=Xenopus laevis GN=desi2 PE=2 SV=1 Back     alignment and function description
>sp|Q9D291|DESI2_MOUSE Desumoylating isopeptidase 2 OS=Mus musculus GN=Desi2 PE=2 SV=1 Back     alignment and function description
>sp|Q5XIT6|DESI2_RAT Desumoylating isopeptidase 2 OS=Rattus norvegicus GN=Desi2 PE=2 SV=1 Back     alignment and function description
>sp|Q5R456|DESI2_PONAB Desumoylating isopeptidase 2 OS=Pongo abelii GN=DESI2 PE=2 SV=1 Back     alignment and function description
>sp|Q9BSY9|DESI2_HUMAN Desumoylating isopeptidase 2 OS=Homo sapiens GN=DESI2 PE=1 SV=1 Back     alignment and function description
>sp|A3QRX8|DESI2_PIG Desumoylating isopeptidase 2 OS=Sus scrofa GN=DESI2 PE=2 SV=1 Back     alignment and function description
>sp|Q5ZIV7|DESI2_CHICK Desumoylating isopeptidase 2 OS=Gallus gallus GN=DESI2 PE=2 SV=1 Back     alignment and function description
>sp|Q6DC39|DESI2_DANRE Desumoylating isopeptidase 2 OS=Danio rerio GN=desi2 PE=2 SV=1 Back     alignment and function description
>sp|Q8X1T0|HAG1_SCHPO DeSI-like protein hag1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=hag1 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query175
122894100216 ethylene-responsive element-binding prot 0.822 0.666 0.972 1e-79
224122530220 predicted protein [Populus trichocarpa] 0.731 0.581 0.898 1e-64
255566925220 conserved hypothetical protein [Ricinus 0.788 0.627 0.843 8e-64
225445422214 PREDICTED: UPF0326 protein At4g17486 [Vi 0.737 0.602 0.868 3e-63
449464592220 PREDICTED: deSI-like protein At4g17486-l 0.731 0.581 0.859 4e-63
359807395225 uncharacterized protein LOC100778961 [Gl 0.805 0.626 0.774 4e-61
356510487230 PREDICTED: UPF0326 protein At4g17486-lik 0.845 0.643 0.746 6e-61
388522367227 unknown [Medicago truncatula] 0.742 0.572 0.8 2e-58
357477941 296 hypothetical protein MTR_4g113720 [Medic 0.742 0.439 0.8 3e-58
224138684227 predicted protein [Populus trichocarpa] 0.754 0.581 0.704 1e-52
>gi|122894100|gb|ABM67696.1| ethylene-responsive element-binding protein [Citrus sinensis] Back     alignment and taxonomy information
 Score =  300 bits (769), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 140/144 (97%), Positives = 141/144 (97%)

Query: 1   MVSAQISSSSEHDGINETQVVLNVYDLTPVNSYTYWFGFGIFHSGIEVHGKEYGFGAHDF 60
           MVSAQISSSSEHDGINETQVVLNVYDLTPVNSYTYWFGFGIFHSGIEVHGKE GFGAHDF
Sbjct: 1   MVSAQISSSSEHDGINETQVVLNVYDLTPVNSYTYWFGFGIFHSGIEVHGKECGFGAHDF 60

Query: 61  PVSGVFEVEPRSCPGFIYRASILLGRINMPPSEFRTFIECSASEYHGDTYNLISKNCNHF 120
           PVSGVFEVEPRSCPGFIYRAS LLGRINMPPSEFRTFIECSASEYHGD YNLISKNCNHF
Sbjct: 61  PVSGVFEVEPRSCPGFIYRASNLLGRINMPPSEFRTFIECSASEYHGDAYNLISKNCNHF 120

Query: 121 TDDIAWRLTGKHIPGWVNRLARLG 144
           TDDIAWRLTGKH+PGWVNRLARLG
Sbjct: 121 TDDIAWRLTGKHVPGWVNRLARLG 144




Source: Citrus sinensis

Species: Citrus sinensis

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224122530|ref|XP_002330504.1| predicted protein [Populus trichocarpa] gi|222872438|gb|EEF09569.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|255566925|ref|XP_002524445.1| conserved hypothetical protein [Ricinus communis] gi|223536233|gb|EEF37885.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
>gi|225445422|ref|XP_002285036.1| PREDICTED: UPF0326 protein At4g17486 [Vitis vinifera] gi|297738915|emb|CBI28160.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|449464592|ref|XP_004150013.1| PREDICTED: deSI-like protein At4g17486-like [Cucumis sativus] gi|449526537|ref|XP_004170270.1| PREDICTED: deSI-like protein At4g17486-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|359807395|ref|NP_001241385.1| uncharacterized protein LOC100778961 [Glycine max] gi|255639360|gb|ACU19976.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|356510487|ref|XP_003523969.1| PREDICTED: UPF0326 protein At4g17486-like [Glycine max] Back     alignment and taxonomy information
>gi|388522367|gb|AFK49245.1| unknown [Medicago truncatula] Back     alignment and taxonomy information
>gi|357477941|ref|XP_003609256.1| hypothetical protein MTR_4g113720 [Medicago truncatula] gi|355510311|gb|AES91453.1| hypothetical protein MTR_4g113720 [Medicago truncatula] Back     alignment and taxonomy information
>gi|224138684|ref|XP_002326664.1| predicted protein [Populus trichocarpa] gi|222833986|gb|EEE72463.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query175
TAIR|locus:2171524245 AT5G47310 "AT5G47310" [Arabido 0.828 0.591 0.609 1.8e-48
TAIR|locus:2129096224 AT4G17486 "AT4G17486" [Arabido 0.817 0.638 0.602 7.7e-48
TAIR|locus:2202452279 AT1G47740 "AT1G47740" [Arabido 0.817 0.512 0.579 3.1e-44
TAIR|locus:2146970218 AT5G25170 "AT5G25170" [Arabido 0.714 0.573 0.616 4.5e-43
TAIR|locus:2025752227 AT1G80690 "AT1G80690" [Arabido 0.714 0.550 0.576 2e-40
TAIR|locus:2040204240 AT2G25190 "AT2G25190" [Arabido 0.714 0.520 0.584 4.2e-40
TAIR|locus:2116667 680 AT4G31980 "AT4G31980" [Arabido 0.714 0.183 0.6 5.8e-40
UNIPROTKB|Q9BSY9194 DESI2 "Desumoylating isopeptid 0.725 0.654 0.431 9.4e-27
UNIPROTKB|A3QRX8194 DESI2 "Desumoylating isopeptid 0.725 0.654 0.431 9.4e-27
MGI|MGI:1926075194 Desi2 "desumoylating isopeptid 0.725 0.654 0.431 9.4e-27
TAIR|locus:2171524 AT5G47310 "AT5G47310" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 506 (183.2 bits), Expect = 1.8e-48, P = 1.8e-48
 Identities = 89/146 (60%), Positives = 115/146 (78%)

Query:     1 MVSAQISSSSEHDGINE-TQVVLNVYDLTPVNSYTYWFGFGIFHSGIEVHGKEYGFGAHD 59
             + S +     E +G    T V LNVYDLTPVN+Y YWFG GIFHSGIE HG EYG+GAH+
Sbjct:    10 LCSGEDKEEEEINGEGSLTPVYLNVYDLTPVNNYLYWFGLGIFHSGIEAHGFEYGYGAHE 69

Query:    60 FPVSGVFEVEPRSCPGFIYRASILLGRINMPPSEFRTFIECSASEYHGDTYNLISKNCNH 119
             +  SGVFEVEPRSCPGFI+R S+LLG  +M  S+FR+F+E  + +YHGDTY+LI+KNCNH
Sbjct:    70 YSSSGVFEVEPRSCPGFIFRRSVLLGTTSMSRSDFRSFMEKLSRKYHGDTYHLIAKNCNH 129

Query:   120 FTDDIAWRLTGKHIPGWVNRLARLGT 145
             FT+++  ++TGK IPGW+NR+AR+G+
Sbjct:   130 FTEEVCLQVTGKPIPGWINRMARVGS 155




GO:0003674 "molecular_function" evidence=ND
GO:0005737 "cytoplasm" evidence=ISM
GO:0008150 "biological_process" evidence=ND
TAIR|locus:2129096 AT4G17486 "AT4G17486" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2202452 AT1G47740 "AT1G47740" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2146970 AT5G25170 "AT5G25170" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2025752 AT1G80690 "AT1G80690" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2040204 AT2G25190 "AT2G25190" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2116667 AT4G31980 "AT4G31980" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|Q9BSY9 DESI2 "Desumoylating isopeptidase 2" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|A3QRX8 DESI2 "Desumoylating isopeptidase 2" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
MGI|MGI:1926075 Desi2 "desumoylating isopeptidase 2" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!


Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Fail to connect to STRING server


Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query175
pfam05903151 pfam05903, DUF862, PPPDE putative peptidase domain 3e-52
>gnl|CDD|218802 pfam05903, DUF862, PPPDE putative peptidase domain Back     alignment and domain information
 Score =  163 bits (415), Expect = 3e-52
 Identities = 70/141 (49%), Positives = 83/141 (58%), Gaps = 10/141 (7%)

Query: 20  VVLNVYDLTPVN------SYTYWFGF---GIFHSGIEVHGKEYGFGAHDFPVSGVFEVEP 70
           V LNVYDL+P+N            G    GIFH+G+EV+G EY FGAH +  SG+FE  P
Sbjct: 3   VKLNVYDLSPINGGLARRYSPLLLGKQIEGIFHTGVEVYGVEYFFGAHTYEGSGIFECPP 62

Query: 71  RS-CPGFIYRASILLGRINMPPSEFRTFIECSASEYHGDTYNLISKNCNHFTDDIAWRLT 129
              CPGF  R SI LG   +   EFR  +   + EY GDTYNLISKNCNHFTD++   LT
Sbjct: 63  GRTCPGFTPRESIELGETELTEEEFREILNSLSEEYTGDTYNLISKNCNHFTDELCQFLT 122

Query: 130 GKHIPGWVNRLARLGTKNSSC 150
           GK IP W+NRL R        
Sbjct: 123 GKKIPSWINRLPREVLSTPFG 143


The PPPDE superfamily (after Permuted Papain fold Peptidases of DsRNA viruses and Eukaryotes), consists of predicted thiol peptidases with a circularly permuted papain-like fold. The inference of the likely DUB function of the PPPDE superfamily proteins is based on the fusions of the catalytic domain to Ub-binding PUG (PUB)/UBA domains and a novel alpha-helical Ub-associated domain (the PUL domain, after PLAP, Ufd3p and Lub1p). Length = 151

Conserved Domains Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 175
KOG0324214 consensus Uncharacterized conserved protein [Funct 100.0
PF05903151 Peptidase_C97: PPPDE putative peptidase domain; In 100.0
PF04970125 LRAT: Lecithin retinol acyltransferase; InterPro: 95.45
PF05608136 DUF778: Protein of unknown function (DUF778); Inte 94.78
>KOG0324 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
Probab=100.00  E-value=3.9e-52  Score=344.36  Aligned_cols=138  Identities=57%  Similarity=1.161  Sum_probs=133.0

Q ss_pred             CcceEEEEEeeCCCcccchhhccceeeeeceEEcCeEeeeccccCCCCCeEeeCCCCCCCCceEEEEEcccccCCHHHHH
Q 030588           16 NETQVVLNVYDLTPVNSYTYWFGFGIFHSGIEVHGKEYGFGAHDFPVSGVFEVEPRSCPGFIYRASILLGRINMPPSEFR   95 (175)
Q Consensus        16 ~~~~V~LnVYDLs~~n~~~~~lG~Gi~HTgVeV~G~Ey~FG~~~~~~sGI~~~~P~~~p~~~~~~~i~lG~T~~~~~~~~   95 (175)
                      ...+|.|||||+++.|.++.++|+|||||||||||+||+||+|+.+.+|||+++|+.+|+++||++|.||.|++++++|+
T Consensus        12 ~~~~v~lnvyd~~~~n~y~~~lGlGIfHSgIeV~g~EyayG~h~~~~sGIfe~~P~~~~~f~fr~sI~lG~Td~~~~~v~   91 (214)
T KOG0324|consen   12 GRVPVYLNVYDLTPINKYLYWLGLGIFHSGIEVHGVEYAYGAHEYPSSGIFEVEPGNCPEFTFRKSILLGSTDLTEDDVR   91 (214)
T ss_pred             cceeeeeeeecceehhhhhhhhcceeEeeeEEEeceeeeccccccCCCCeEeeCCCCCCCCceeEEEEecCCCCCHHHHH
Confidence            78999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhccCCCCcccccccccchHHHHHHHHhcCCCCChHhHHHhhhc--cccCCCCccch
Q 030588           96 TFIECSASEYHGDTYNLISKNCNHFTDDIAWRLTGKHIPGWVNRLARLG--TKNSSCFHLPM  155 (175)
Q Consensus        96 ~~l~~l~~~f~~~~Y~Ll~~NCNhFs~~l~~~L~gk~IP~~I~rla~~~--s~~~~~~l~P~  155 (175)
                      +||++|+++|+|++|||+.|||||||+++|++|+||+||+||||||+++  +++ .|+ +|+
T Consensus        92 ~~le~L~~ey~G~~YhL~~kNCNHFsn~la~~Ltgk~IP~winrLa~~~~~~~~-~~~-~p~  151 (214)
T KOG0324|consen   92 RILEELSEEYRGNSYHLLTKNCNHFSNELALQLTGKKIPSWVNRLARAGLCSLC-NCL-LPM  151 (214)
T ss_pred             HHHHHHHhhcCCceehhhhhccchhHHHHHHHHcCCCccHHHHHHHHHhhhhHH-hhc-chh
Confidence            9999999999999999999999999999999999999999999999988  555 775 455



>PF05903 Peptidase_C97: PPPDE putative peptidase domain; InterPro: IPR008580 This domain consists of the N-terminal portion of several eukaryotic sequences Back     alignment and domain information
>PF04970 LRAT: Lecithin retinol acyltransferase; InterPro: IPR007053 This entry represents a conserved sequence region found in proteins from viruses, bacteria and eukaryotes Back     alignment and domain information
>PF05608 DUF778: Protein of unknown function (DUF778); InterPro: IPR008496 This family consists of several eukaryotic proteins of unknown function Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query175
2wp7_A168 Crystal Structure Of Desumoylase(Duf862) Length = 1 4e-06
3ebq_A170 Crystal Structure Of Human Pppde1 Length = 170 4e-06
>pdb|2WP7|A Chain A, Crystal Structure Of Desumoylase(Duf862) Length = 168 Back     alignment and structure

Iteration: 1

Score = 47.4 bits (111), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 30/102 (29%), Positives = 50/102 (49%), Gaps = 6/102 (5%) Query: 40 GIFHSGIEVHGKEYGFGAHDFPVSGVFEVEPRSCPGFIYRASILLGRINMPPSEFRTFIE 99 GI+H+ I VH E+ FG+ SG+ P + + +G + F ++ Sbjct: 35 GIWHTSIVVHKDEFFFGS-----SGISSCTPGGTLLGPPDSVVDVGNTEVTEEIFLEYLS 89 Query: 100 C-SASEYHGDTYNLISKNCNHFTDDIAWRLTGKHIPGWVNRL 140 S + G+ YNL NCN F++++A LTG+ IP ++ L Sbjct: 90 SLGESLFRGEAYNLFEHNCNTFSNEVAQFLTGRKIPSYITDL 131
>pdb|3EBQ|A Chain A, Crystal Structure Of Human Pppde1 Length = 170 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query175
2wp7_A168 PPPDE peptidase domain-containing protein 2; hydro 7e-44
>2wp7_A PPPDE peptidase domain-containing protein 2; hydrolase, phosphoprotein, ubiquitin-like protein; 1.90A {Mus musculus} PDB: 3ebq_A Length = 168 Back     alignment and structure
 Score =  142 bits (359), Expect = 7e-44
 Identities = 36/137 (26%), Positives = 59/137 (43%), Gaps = 12/137 (8%)

Query: 13  DGINETQVVLNVYDLTP-VNSYTYWFGFG-----IFHSGIEVHGKEYGFGAHDFPVSGVF 66
           +  N   V L VYDL+  +         G     I+H+ I VH  E+ FG+      G+ 
Sbjct: 2   EPPNLYPVKLYVYDLSKGLARRLSPIMLGKQLEGIWHTSIVVHKDEFFFGSS-----GIS 56

Query: 67  EVEPRSCPGFIYRASILLGRINMPPSEFRTFI-ECSASEYHGDTYNLISKNCNHFTDDIA 125
              P         + + +G   +    F  ++     S + G+ YNL   NCN F++++A
Sbjct: 57  SCTPGGTLLGPPDSVVDVGNTEVTEEIFLEYLSSLGESLFRGEAYNLFEHNCNTFSNEVA 116

Query: 126 WRLTGKHIPGWVNRLAR 142
             LTG+ IP ++  L  
Sbjct: 117 QFLTGRKIPSYITDLPS 133


Structure Templates Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query175
2wp7_A168 PPPDE peptidase domain-containing protein 2; hydro 100.0
2lkt_A125 Retinoic acid receptor responder protein 3; TIG3, 94.42
4dot_A140 Group XVI phospholipase A2; alpha/beta fold, phosp 94.38
4dpz_X137 HRAS-like suppressor 2; alpha/beta fold, enzyme ph 94.37
>2wp7_A PPPDE peptidase domain-containing protein 2; hydrolase, phosphoprotein, ubiquitin-like protein; 1.90A {Mus musculus} PDB: 3ebq_A Back     alignment and structure
Probab=100.00  E-value=3.4e-53  Score=340.89  Aligned_cols=139  Identities=28%  Similarity=0.472  Sum_probs=128.6

Q ss_pred             cceEEEEEeeCCCccc-ch--hhccc---eeeeeceEEcCeEeeeccccCCCCCeEeeCCCCCCCCceEEEEEcccccCC
Q 030588           17 ETQVVLNVYDLTPVNS-YT--YWFGF---GIFHSGIEVHGKEYGFGAHDFPVSGVFEVEPRSCPGFIYRASILLGRINMP   90 (175)
Q Consensus        17 ~~~V~LnVYDLs~~n~-~~--~~lG~---Gi~HTgVeV~G~Ey~FG~~~~~~sGI~~~~P~~~p~~~~~~~i~lG~T~~~   90 (175)
                      +.+|+||||||+++++ .+  .++|+   |||||||||||+||+||+     +||+.+.|+.++.++|+++|+||+|++|
T Consensus         6 ~~~V~LnVYDLs~g~a~~~s~~~lG~~i~Gi~HtgV~V~G~EY~FG~-----~GI~~~~Pg~~~~g~~resi~lG~T~~~   80 (168)
T 2wp7_A            6 LYPVKLYVYDLSKGLARRLSPIMLGKQLEGIWHTSIVVHKDEFFFGS-----SGISSCTPGGTLLGPPDSVVDVGNTEVT   80 (168)
T ss_dssp             CEEEEEEEEETTTTHHHHHHHHHTSSCCCCCEEEEEEETTEEEEEET-----TEEEEESTTCSTTCSCSEEEEEEEECCC
T ss_pred             CcEEEEEEEECChHHHHHhhHHHhCCCcCcEEEEEEEECCEEEEEcC-----CCeEecCCCcCCCCCeEEEEECCCccCC
Confidence            4899999999999743 22  47897   999999999999999996     4999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhcc-CCCCcccccccccchHHHHHHHHhcCCCCChHhHHHhh--hccccCCCCccchhhhhhhhc
Q 030588           91 PSEFRTFIECSASE-YHGDTYNLISKNCNHFTDDIAWRLTGKHIPGWVNRLAR--LGTKNSSCFHLPMFVIQQVIT  163 (175)
Q Consensus        91 ~~~~~~~l~~l~~~-f~~~~Y~Ll~~NCNhFs~~l~~~L~gk~IP~~I~rla~--~~s~~~~~~l~P~~~i~~~~~  163 (175)
                      +++|+++|++|+++ |++++||||+|||||||||+|++|+||+||+||||+|+  +++++ +.+|+||  |+++..
T Consensus        81 ~~~~~~~l~~l~~~~~~g~~Y~Ll~~NCNhFs~~l~~~L~gk~IP~wInrl~~~vl~tp~-G~~l~~~--l~~~~~  153 (168)
T 2wp7_A           81 EEIFLEYLSSLGESLFRGEAYNLFEHNCNTFSNEVAQFLTGRKIPSYITDLPSEVLSTPF-GQALRPF--LDSIQI  153 (168)
T ss_dssp             HHHHHHHHHHHHTTTCSGGGCBTTTBSHHHHHHHHHHHHHSCCCCHHHHTHHHHHHTSHH-HHHHHHH--HTTCCC
T ss_pred             HHHHHHHHHHhhhccCCcccCchhhhccchhHHHHHHHhcCCCCcHHHHHHHHHHhcCcH-HHHHHHH--HHHHhh
Confidence            99999999999998 99999999999999999999999999999999999999  77888 8899999  677654



>2lkt_A Retinoic acid receptor responder protein 3; TIG3, human tumor suppressor II family, NLPC/P60, hydrolase; NMR {Homo sapiens} Back     alignment and structure
>4dot_A Group XVI phospholipase A2; alpha/beta fold, phospholipase/acyltransferase, phosphatidyl phosphatidylethanolamine, membrane, hydrolase; 1.96A {Homo sapiens} Back     alignment and structure
>4dpz_X HRAS-like suppressor 2; alpha/beta fold, enzyme phospholipid acyltransferase, hydrol transferase; 1.25A {Homo sapiens} PDB: 4fa0_A 2kyt_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

No hit with probability above 80.00