Citrus Sinensis ID: 030588
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 175 | ||||||
| 122894100 | 216 | ethylene-responsive element-binding prot | 0.822 | 0.666 | 0.972 | 1e-79 | |
| 224122530 | 220 | predicted protein [Populus trichocarpa] | 0.731 | 0.581 | 0.898 | 1e-64 | |
| 255566925 | 220 | conserved hypothetical protein [Ricinus | 0.788 | 0.627 | 0.843 | 8e-64 | |
| 225445422 | 214 | PREDICTED: UPF0326 protein At4g17486 [Vi | 0.737 | 0.602 | 0.868 | 3e-63 | |
| 449464592 | 220 | PREDICTED: deSI-like protein At4g17486-l | 0.731 | 0.581 | 0.859 | 4e-63 | |
| 359807395 | 225 | uncharacterized protein LOC100778961 [Gl | 0.805 | 0.626 | 0.774 | 4e-61 | |
| 356510487 | 230 | PREDICTED: UPF0326 protein At4g17486-lik | 0.845 | 0.643 | 0.746 | 6e-61 | |
| 388522367 | 227 | unknown [Medicago truncatula] | 0.742 | 0.572 | 0.8 | 2e-58 | |
| 357477941 | 296 | hypothetical protein MTR_4g113720 [Medic | 0.742 | 0.439 | 0.8 | 3e-58 | |
| 224138684 | 227 | predicted protein [Populus trichocarpa] | 0.754 | 0.581 | 0.704 | 1e-52 |
| >gi|122894100|gb|ABM67696.1| ethylene-responsive element-binding protein [Citrus sinensis] | Back alignment and taxonomy information |
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Score = 300 bits (769), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 140/144 (97%), Positives = 141/144 (97%)
Query: 1 MVSAQISSSSEHDGINETQVVLNVYDLTPVNSYTYWFGFGIFHSGIEVHGKEYGFGAHDF 60
MVSAQISSSSEHDGINETQVVLNVYDLTPVNSYTYWFGFGIFHSGIEVHGKE GFGAHDF
Sbjct: 1 MVSAQISSSSEHDGINETQVVLNVYDLTPVNSYTYWFGFGIFHSGIEVHGKECGFGAHDF 60
Query: 61 PVSGVFEVEPRSCPGFIYRASILLGRINMPPSEFRTFIECSASEYHGDTYNLISKNCNHF 120
PVSGVFEVEPRSCPGFIYRAS LLGRINMPPSEFRTFIECSASEYHGD YNLISKNCNHF
Sbjct: 61 PVSGVFEVEPRSCPGFIYRASNLLGRINMPPSEFRTFIECSASEYHGDAYNLISKNCNHF 120
Query: 121 TDDIAWRLTGKHIPGWVNRLARLG 144
TDDIAWRLTGKH+PGWVNRLARLG
Sbjct: 121 TDDIAWRLTGKHVPGWVNRLARLG 144
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Source: Citrus sinensis Species: Citrus sinensis Genus: Citrus Family: Rutaceae Order: Sapindales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224122530|ref|XP_002330504.1| predicted protein [Populus trichocarpa] gi|222872438|gb|EEF09569.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
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| >gi|255566925|ref|XP_002524445.1| conserved hypothetical protein [Ricinus communis] gi|223536233|gb|EEF37885.1| conserved hypothetical protein [Ricinus communis] | Back alignment and taxonomy information |
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| >gi|225445422|ref|XP_002285036.1| PREDICTED: UPF0326 protein At4g17486 [Vitis vinifera] gi|297738915|emb|CBI28160.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|449464592|ref|XP_004150013.1| PREDICTED: deSI-like protein At4g17486-like [Cucumis sativus] gi|449526537|ref|XP_004170270.1| PREDICTED: deSI-like protein At4g17486-like [Cucumis sativus] | Back alignment and taxonomy information |
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| >gi|359807395|ref|NP_001241385.1| uncharacterized protein LOC100778961 [Glycine max] gi|255639360|gb|ACU19976.1| unknown [Glycine max] | Back alignment and taxonomy information |
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| >gi|356510487|ref|XP_003523969.1| PREDICTED: UPF0326 protein At4g17486-like [Glycine max] | Back alignment and taxonomy information |
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| >gi|388522367|gb|AFK49245.1| unknown [Medicago truncatula] | Back alignment and taxonomy information |
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| >gi|357477941|ref|XP_003609256.1| hypothetical protein MTR_4g113720 [Medicago truncatula] gi|355510311|gb|AES91453.1| hypothetical protein MTR_4g113720 [Medicago truncatula] | Back alignment and taxonomy information |
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| >gi|224138684|ref|XP_002326664.1| predicted protein [Populus trichocarpa] gi|222833986|gb|EEE72463.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
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Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 175 | ||||||
| TAIR|locus:2171524 | 245 | AT5G47310 "AT5G47310" [Arabido | 0.828 | 0.591 | 0.609 | 1.8e-48 | |
| TAIR|locus:2129096 | 224 | AT4G17486 "AT4G17486" [Arabido | 0.817 | 0.638 | 0.602 | 7.7e-48 | |
| TAIR|locus:2202452 | 279 | AT1G47740 "AT1G47740" [Arabido | 0.817 | 0.512 | 0.579 | 3.1e-44 | |
| TAIR|locus:2146970 | 218 | AT5G25170 "AT5G25170" [Arabido | 0.714 | 0.573 | 0.616 | 4.5e-43 | |
| TAIR|locus:2025752 | 227 | AT1G80690 "AT1G80690" [Arabido | 0.714 | 0.550 | 0.576 | 2e-40 | |
| TAIR|locus:2040204 | 240 | AT2G25190 "AT2G25190" [Arabido | 0.714 | 0.520 | 0.584 | 4.2e-40 | |
| TAIR|locus:2116667 | 680 | AT4G31980 "AT4G31980" [Arabido | 0.714 | 0.183 | 0.6 | 5.8e-40 | |
| UNIPROTKB|Q9BSY9 | 194 | DESI2 "Desumoylating isopeptid | 0.725 | 0.654 | 0.431 | 9.4e-27 | |
| UNIPROTKB|A3QRX8 | 194 | DESI2 "Desumoylating isopeptid | 0.725 | 0.654 | 0.431 | 9.4e-27 | |
| MGI|MGI:1926075 | 194 | Desi2 "desumoylating isopeptid | 0.725 | 0.654 | 0.431 | 9.4e-27 |
| TAIR|locus:2171524 AT5G47310 "AT5G47310" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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Score = 506 (183.2 bits), Expect = 1.8e-48, P = 1.8e-48
Identities = 89/146 (60%), Positives = 115/146 (78%)
Query: 1 MVSAQISSSSEHDGINE-TQVVLNVYDLTPVNSYTYWFGFGIFHSGIEVHGKEYGFGAHD 59
+ S + E +G T V LNVYDLTPVN+Y YWFG GIFHSGIE HG EYG+GAH+
Sbjct: 10 LCSGEDKEEEEINGEGSLTPVYLNVYDLTPVNNYLYWFGLGIFHSGIEAHGFEYGYGAHE 69
Query: 60 FPVSGVFEVEPRSCPGFIYRASILLGRINMPPSEFRTFIECSASEYHGDTYNLISKNCNH 119
+ SGVFEVEPRSCPGFI+R S+LLG +M S+FR+F+E + +YHGDTY+LI+KNCNH
Sbjct: 70 YSSSGVFEVEPRSCPGFIFRRSVLLGTTSMSRSDFRSFMEKLSRKYHGDTYHLIAKNCNH 129
Query: 120 FTDDIAWRLTGKHIPGWVNRLARLGT 145
FT+++ ++TGK IPGW+NR+AR+G+
Sbjct: 130 FTEEVCLQVTGKPIPGWINRMARVGS 155
|
|
| TAIR|locus:2129096 AT4G17486 "AT4G17486" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2202452 AT1G47740 "AT1G47740" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2146970 AT5G25170 "AT5G25170" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2025752 AT1G80690 "AT1G80690" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2040204 AT2G25190 "AT2G25190" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2116667 AT4G31980 "AT4G31980" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| UNIPROTKB|Q9BSY9 DESI2 "Desumoylating isopeptidase 2" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
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| UNIPROTKB|A3QRX8 DESI2 "Desumoylating isopeptidase 2" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
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| MGI|MGI:1926075 Desi2 "desumoylating isopeptidase 2" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Ezypred Server 
Original result from Ezypred Server
Fail to connect to Ezypred Server
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING 
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database part I
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 175 | |||
| pfam05903 | 151 | pfam05903, DUF862, PPPDE putative peptidase domain | 3e-52 |
| >gnl|CDD|218802 pfam05903, DUF862, PPPDE putative peptidase domain | Back alignment and domain information |
|---|
Score = 163 bits (415), Expect = 3e-52
Identities = 70/141 (49%), Positives = 83/141 (58%), Gaps = 10/141 (7%)
Query: 20 VVLNVYDLTPVN------SYTYWFGF---GIFHSGIEVHGKEYGFGAHDFPVSGVFEVEP 70
V LNVYDL+P+N G GIFH+G+EV+G EY FGAH + SG+FE P
Sbjct: 3 VKLNVYDLSPINGGLARRYSPLLLGKQIEGIFHTGVEVYGVEYFFGAHTYEGSGIFECPP 62
Query: 71 RS-CPGFIYRASILLGRINMPPSEFRTFIECSASEYHGDTYNLISKNCNHFTDDIAWRLT 129
CPGF R SI LG + EFR + + EY GDTYNLISKNCNHFTD++ LT
Sbjct: 63 GRTCPGFTPRESIELGETELTEEEFREILNSLSEEYTGDTYNLISKNCNHFTDELCQFLT 122
Query: 130 GKHIPGWVNRLARLGTKNSSC 150
GK IP W+NRL R
Sbjct: 123 GKKIPSWINRLPREVLSTPFG 143
|
The PPPDE superfamily (after Permuted Papain fold Peptidases of DsRNA viruses and Eukaryotes), consists of predicted thiol peptidases with a circularly permuted papain-like fold. The inference of the likely DUB function of the PPPDE superfamily proteins is based on the fusions of the catalytic domain to Ub-binding PUG (PUB)/UBA domains and a novel alpha-helical Ub-associated domain (the PUL domain, after PLAP, Ufd3p and Lub1p). Length = 151 |
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 175 | |||
| KOG0324 | 214 | consensus Uncharacterized conserved protein [Funct | 100.0 | |
| PF05903 | 151 | Peptidase_C97: PPPDE putative peptidase domain; In | 100.0 | |
| PF04970 | 125 | LRAT: Lecithin retinol acyltransferase; InterPro: | 95.45 | |
| PF05608 | 136 | DUF778: Protein of unknown function (DUF778); Inte | 94.78 |
| >KOG0324 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-52 Score=344.36 Aligned_cols=138 Identities=57% Similarity=1.161 Sum_probs=133.0
Q ss_pred CcceEEEEEeeCCCcccchhhccceeeeeceEEcCeEeeeccccCCCCCeEeeCCCCCCCCceEEEEEcccccCCHHHHH
Q 030588 16 NETQVVLNVYDLTPVNSYTYWFGFGIFHSGIEVHGKEYGFGAHDFPVSGVFEVEPRSCPGFIYRASILLGRINMPPSEFR 95 (175)
Q Consensus 16 ~~~~V~LnVYDLs~~n~~~~~lG~Gi~HTgVeV~G~Ey~FG~~~~~~sGI~~~~P~~~p~~~~~~~i~lG~T~~~~~~~~ 95 (175)
...+|.|||||+++.|.++.++|+|||||||||||+||+||+|+.+.+|||+++|+.+|+++||++|.||.|++++++|+
T Consensus 12 ~~~~v~lnvyd~~~~n~y~~~lGlGIfHSgIeV~g~EyayG~h~~~~sGIfe~~P~~~~~f~fr~sI~lG~Td~~~~~v~ 91 (214)
T KOG0324|consen 12 GRVPVYLNVYDLTPINKYLYWLGLGIFHSGIEVHGVEYAYGAHEYPSSGIFEVEPGNCPEFTFRKSILLGSTDLTEDDVR 91 (214)
T ss_pred cceeeeeeeecceehhhhhhhhcceeEeeeEEEeceeeeccccccCCCCeEeeCCCCCCCCceeEEEEecCCCCCHHHHH
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhccCCCCcccccccccchHHHHHHHHhcCCCCChHhHHHhhhc--cccCCCCccch
Q 030588 96 TFIECSASEYHGDTYNLISKNCNHFTDDIAWRLTGKHIPGWVNRLARLG--TKNSSCFHLPM 155 (175)
Q Consensus 96 ~~l~~l~~~f~~~~Y~Ll~~NCNhFs~~l~~~L~gk~IP~~I~rla~~~--s~~~~~~l~P~ 155 (175)
+||++|+++|+|++|||+.|||||||+++|++|+||+||+||||||+++ +++ .|+ +|+
T Consensus 92 ~~le~L~~ey~G~~YhL~~kNCNHFsn~la~~Ltgk~IP~winrLa~~~~~~~~-~~~-~p~ 151 (214)
T KOG0324|consen 92 RILEELSEEYRGNSYHLLTKNCNHFSNELALQLTGKKIPSWVNRLARAGLCSLC-NCL-LPM 151 (214)
T ss_pred HHHHHHHhhcCCceehhhhhccchhHHHHHHHHcCCCccHHHHHHHHHhhhhHH-hhc-chh
Confidence 9999999999999999999999999999999999999999999999988 555 775 455
|
|
| >PF05903 Peptidase_C97: PPPDE putative peptidase domain; InterPro: IPR008580 This domain consists of the N-terminal portion of several eukaryotic sequences | Back alignment and domain information |
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| >PF04970 LRAT: Lecithin retinol acyltransferase; InterPro: IPR007053 This entry represents a conserved sequence region found in proteins from viruses, bacteria and eukaryotes | Back alignment and domain information |
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| >PF05608 DUF778: Protein of unknown function (DUF778); InterPro: IPR008496 This family consists of several eukaryotic proteins of unknown function | Back alignment and domain information |
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Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() | |
| Query | 175 | ||||
| 2wp7_A | 168 | Crystal Structure Of Desumoylase(Duf862) Length = 1 | 4e-06 | ||
| 3ebq_A | 170 | Crystal Structure Of Human Pppde1 Length = 170 | 4e-06 |
| >pdb|2WP7|A Chain A, Crystal Structure Of Desumoylase(Duf862) Length = 168 | Back alignment and structure |
|
| >pdb|3EBQ|A Chain A, Crystal Structure Of Human Pppde1 Length = 170 | Back alignment and structure |
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 175 | |||
| 2wp7_A | 168 | PPPDE peptidase domain-containing protein 2; hydro | 7e-44 |
| >2wp7_A PPPDE peptidase domain-containing protein 2; hydrolase, phosphoprotein, ubiquitin-like protein; 1.90A {Mus musculus} PDB: 3ebq_A Length = 168 | Back alignment and structure |
|---|
Score = 142 bits (359), Expect = 7e-44
Identities = 36/137 (26%), Positives = 59/137 (43%), Gaps = 12/137 (8%)
Query: 13 DGINETQVVLNVYDLTP-VNSYTYWFGFG-----IFHSGIEVHGKEYGFGAHDFPVSGVF 66
+ N V L VYDL+ + G I+H+ I VH E+ FG+ G+
Sbjct: 2 EPPNLYPVKLYVYDLSKGLARRLSPIMLGKQLEGIWHTSIVVHKDEFFFGSS-----GIS 56
Query: 67 EVEPRSCPGFIYRASILLGRINMPPSEFRTFI-ECSASEYHGDTYNLISKNCNHFTDDIA 125
P + + +G + F ++ S + G+ YNL NCN F++++A
Sbjct: 57 SCTPGGTLLGPPDSVVDVGNTEVTEEIFLEYLSSLGESLFRGEAYNLFEHNCNTFSNEVA 116
Query: 126 WRLTGKHIPGWVNRLAR 142
LTG+ IP ++ L
Sbjct: 117 QFLTGRKIPSYITDLPS 133
|
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 175 | |||
| 2wp7_A | 168 | PPPDE peptidase domain-containing protein 2; hydro | 100.0 | |
| 2lkt_A | 125 | Retinoic acid receptor responder protein 3; TIG3, | 94.42 | |
| 4dot_A | 140 | Group XVI phospholipase A2; alpha/beta fold, phosp | 94.38 | |
| 4dpz_X | 137 | HRAS-like suppressor 2; alpha/beta fold, enzyme ph | 94.37 |
| >2wp7_A PPPDE peptidase domain-containing protein 2; hydrolase, phosphoprotein, ubiquitin-like protein; 1.90A {Mus musculus} PDB: 3ebq_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-53 Score=340.89 Aligned_cols=139 Identities=28% Similarity=0.472 Sum_probs=128.6
Q ss_pred cceEEEEEeeCCCccc-ch--hhccc---eeeeeceEEcCeEeeeccccCCCCCeEeeCCCCCCCCceEEEEEcccccCC
Q 030588 17 ETQVVLNVYDLTPVNS-YT--YWFGF---GIFHSGIEVHGKEYGFGAHDFPVSGVFEVEPRSCPGFIYRASILLGRINMP 90 (175)
Q Consensus 17 ~~~V~LnVYDLs~~n~-~~--~~lG~---Gi~HTgVeV~G~Ey~FG~~~~~~sGI~~~~P~~~p~~~~~~~i~lG~T~~~ 90 (175)
+.+|+||||||+++++ .+ .++|+ |||||||||||+||+||+ +||+.+.|+.++.++|+++|+||+|++|
T Consensus 6 ~~~V~LnVYDLs~g~a~~~s~~~lG~~i~Gi~HtgV~V~G~EY~FG~-----~GI~~~~Pg~~~~g~~resi~lG~T~~~ 80 (168)
T 2wp7_A 6 LYPVKLYVYDLSKGLARRLSPIMLGKQLEGIWHTSIVVHKDEFFFGS-----SGISSCTPGGTLLGPPDSVVDVGNTEVT 80 (168)
T ss_dssp CEEEEEEEEETTTTHHHHHHHHHTSSCCCCCEEEEEEETTEEEEEET-----TEEEEESTTCSTTCSCSEEEEEEEECCC
T ss_pred CcEEEEEEEECChHHHHHhhHHHhCCCcCcEEEEEEEECCEEEEEcC-----CCeEecCCCcCCCCCeEEEEECCCccCC
Confidence 4899999999999743 22 47897 999999999999999996 4999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcc-CCCCcccccccccchHHHHHHHHhcCCCCChHhHHHhh--hccccCCCCccchhhhhhhhc
Q 030588 91 PSEFRTFIECSASE-YHGDTYNLISKNCNHFTDDIAWRLTGKHIPGWVNRLAR--LGTKNSSCFHLPMFVIQQVIT 163 (175)
Q Consensus 91 ~~~~~~~l~~l~~~-f~~~~Y~Ll~~NCNhFs~~l~~~L~gk~IP~~I~rla~--~~s~~~~~~l~P~~~i~~~~~ 163 (175)
+++|+++|++|+++ |++++||||+|||||||||+|++|+||+||+||||+|+ +++++ +.+|+|| |+++..
T Consensus 81 ~~~~~~~l~~l~~~~~~g~~Y~Ll~~NCNhFs~~l~~~L~gk~IP~wInrl~~~vl~tp~-G~~l~~~--l~~~~~ 153 (168)
T 2wp7_A 81 EEIFLEYLSSLGESLFRGEAYNLFEHNCNTFSNEVAQFLTGRKIPSYITDLPSEVLSTPF-GQALRPF--LDSIQI 153 (168)
T ss_dssp HHHHHHHHHHHHTTTCSGGGCBTTTBSHHHHHHHHHHHHHSCCCCHHHHTHHHHHHTSHH-HHHHHHH--HTTCCC
T ss_pred HHHHHHHHHHhhhccCCcccCchhhhccchhHHHHHHHhcCCCCcHHHHHHHHHHhcCcH-HHHHHHH--HHHHhh
Confidence 99999999999998 99999999999999999999999999999999999999 77888 8899999 677654
|
| >2lkt_A Retinoic acid receptor responder protein 3; TIG3, human tumor suppressor II family, NLPC/P60, hydrolase; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >4dot_A Group XVI phospholipase A2; alpha/beta fold, phospholipase/acyltransferase, phosphatidyl phosphatidylethanolamine, membrane, hydrolase; 1.96A {Homo sapiens} | Back alignment and structure |
|---|
| >4dpz_X HRAS-like suppressor 2; alpha/beta fold, enzyme phospholipid acyltransferase, hydrol transferase; 1.25A {Homo sapiens} PDB: 4fa0_A 2kyt_A | Back alignment and structure |
|---|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
No hit with probability above 80.00