Citrus Sinensis ID: 030598

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170----
MADTKFNNTALLVIDMQNDFILDDGLMRVDGGKAIVPNVIKAVEIARQHGILVVWVVREHDPLGRDVELFRQHLYSTGTVGPTSKGSPGAELVDGLEIKEGDYKVVKMRFSAFFATHLNSFLRTAGIDSLVIVGVQTPNCIRQTVFDAVELDYKSITIIVDATAAATPEIHAGM
cccccccccEEEEEccccccccccccccccccccHHHHHHHHHHHHHHcccEEEEEEcccccccccccccccccccccccccccccccccccccccccccccEEEEcccccccccccHHHHHHHccccEEEEEEEcccHHHHHHHHHHHHccccEEEEcccccccccHHHHccc
cccccccccEEEEEEcHHHccccccccccccccccHHHHHHHHHHHHHcccEEEEEEccccccccHccccccccccccccccEEccccccEHHHHcccccccEEEEcccccccccccHHHHHHHccccEEEEEEEEccHHHHHHHHHHHHccccEEEEEcHHHHcccHHHHccc
madtkfnnTALLVIDMqndfilddglmrvdggkaivpNVIKAVEIARQHGILVVWVVRehdplgrdvELFRQHLystgtvgptskgspgaelvdgleikegdYKVVKMRFSAFFATHLNSFLRTAGIDSLVIVGVqtpncirqtVFDAVELDYKSITIIVDataaatpeihagm
madtkfnnTALLVIDMQNDFILDDGLMRVDGGKAIVPNVIKAVEIARQHGILVVWVVREHDPLGRDVELFRQHLYstgtvgptskgspgaelvdgleIKEGDYKVVKMRFSAFFATHLNSFLRTAGIDSLVIVGVQTPNCIRQTVFDAVELDYKSITIIVDATAAATPEIHAGM
MADTKFNNTALLVIDMQNDFILDDGLMRVDGGKAIVPNVIKAVEIARQHGILVVWVVREHDPLGRDVELFRQHLYSTGTVGPTSKGSPGAELVDGLEIKEGDYKVVKMRFSAFFATHLNSFLRTAGIDSLVIVGVQTPNCIRQTVFDAVELDYKSitiivdataaatPEIHAGM
******NNTALLVIDMQNDFILDDGLMRVDGGKAIVPNVIKAVEIARQHGILVVWVVREHDPLGRDVELFRQHLYSTGTV**********ELVDGLEIKEGDYKVVKMRFSAFFATHLNSFLRTAGIDSLVIVGVQTPNCIRQTVFDAVELDYKSITIIVDATAA*********
***TKFNNTALLVIDMQNDFILDDGLMRVDGGKAIVPNVIKAVEIARQHGILVVWVVREHDPLGRDVELFRQHLYSTGTVGPTSKGSPGAELVDGLEIKEGDYKVVKMRFSAFFATHLNSFLRTAGIDSLVIVGVQTPNCIRQTVFDAVELDYKSITIIVDATAAATPEIHAGM
MADTKFNNTALLVIDMQNDFILDDGLMRVDGGKAIVPNVIKAVEIARQHGILVVWVVREHDPLGRDVELFRQHLYSTGTVGPTSKGSPGAELVDGLEIKEGDYKVVKMRFSAFFATHLNSFLRTAGIDSLVIVGVQTPNCIRQTVFDAVELDYKSITIIVDATAAATPEIHAGM
**DTKFNNTALLVIDMQNDFILDDGLMRVDGGKAIVPNVIKAVEIARQHGILVVWVVREHDPLGRDVELFRQHLYSTGTVGPTSKGSPGAELVDGLEIKEGDYKVVKMRFSAFFATHLNSFLRTAGIDSLVIVGVQTPNCIRQTVFDAVELDYKSITIIVDATAAATPE*****
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MADTKFNNTALLVIDMQNDFILDDGLMRVDGGKAIVPNVIKAVEIARQHGILVVWVVREHDPLGRDVELFRQHLYSTGTVGPTSKGSPGAELVDGLEIKEGDYKVVKMRFSAFFATHLNSFLRTAGIDSLVIVGVQTPNCIRQTVFDAVELDYKSITIIVDATAAATPEIHAGM
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query174 2.2.26 [Sep-21-2011]
Q8FJ42244 Peroxyureidoacrylate/urei yes no 0.885 0.631 0.305 3e-15
B7UNZ4230 Peroxyureidoacrylate/urei yes no 0.885 0.669 0.305 3e-15
Q1RDK6244 Peroxyureidoacrylate/urei yes no 0.885 0.631 0.305 3e-15
A1A9R6244 Peroxyureidoacrylate/urei yes no 0.885 0.631 0.305 3e-15
B7NLB5230 Peroxyureidoacrylate/urei yes no 0.925 0.7 0.311 3e-15
B7MTF4230 Peroxyureidoacrylate/urei yes no 0.885 0.669 0.305 3e-15
D5CZH1231 Peroxyureidoacrylate/urei yes no 0.885 0.666 0.305 3e-15
B7MIF8230 Peroxyureidoacrylate/urei yes no 0.885 0.669 0.305 4e-15
B1LIZ4231 Peroxyureidoacrylate/urei yes no 0.925 0.696 0.311 5e-15
Q3Z3A3244 Peroxyureidoacrylate/urei yes no 0.885 0.631 0.3 6e-15
>sp|Q8FJ42|RUTB_ECOL6 Peroxyureidoacrylate/ureidoacrylate amidohydrolase RutB OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=rutB PE=3 SV=1 Back     alignment and function desciption
 Score = 81.3 bits (199), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 58/190 (30%), Positives = 87/190 (45%), Gaps = 36/190 (18%)

Query: 7   NNTALLVIDMQNDFILDDGLMRVDG-----GKAIVPNVIKAVEIARQHGILVVWVVREHD 61
             TAL+V+DMQN +    G + + G      + ++ N+  AV  AR  G+L++W     D
Sbjct: 30  QQTALIVVDMQNAYATPGGYLDLAGFDVSTTRPVIANIQTAVTAARTAGMLIIWFQNGWD 89

Query: 62  PLGRDVELFRQHLYSTGTVGPT---------------------SKGSPGAELVDGLEIKE 100
                     Q++ + G   P                      +KGS   +LVD L  + 
Sbjct: 90  ---------EQYVEAGGPGSPNFHKSNALKTMRNQPQLQGKLLAKGSWDYQLVDELVPQP 140

Query: 101 GDYKVVKMRFSAFFATHLNSFLRTAGIDSLVIVGVQTPNCIRQTVFDAVELDYKSITIIV 160
           GD  + K R+S FF T L+S LR+ GI  LV  G+ T  C+  T+ D   L+Y  + ++ 
Sbjct: 141 GDIVLPKPRYSGFFNTPLDSILRSRGIRHLVFTGIATNVCVESTLRDGFFLEYFGV-VLE 199

Query: 161 DATAAATPEI 170
           DAT  A PE 
Sbjct: 200 DATHQAGPEF 209
In vivo, quickly hydrolyzes the ureidoacrylate peracid to avoid toxicity, but can also hydrolyzes ureidoacrylate that is formed spontaneously from ureidoacrylate peracid. One of the products of hydrolysis, carbamate, hydrolyzes spontaneously, thereby releasing one of the pyrimidine rings nitrogen atoms as ammonia and one of its carbons as CO2.
Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) (taxid: 199310)
EC: 3EC: .EC: 5EC: .EC: 1EC: .EC: 1EC: 1EC: 0
>sp|B7UNZ4|RUTB_ECO27 Peroxyureidoacrylate/ureidoacrylate amidohydrolase RutB OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC) GN=rutB PE=3 SV=1 Back     alignment and function description
>sp|Q1RDK6|RUTB_ECOUT Peroxyureidoacrylate/ureidoacrylate amidohydrolase RutB OS=Escherichia coli (strain UTI89 / UPEC) GN=rutB PE=3 SV=1 Back     alignment and function description
>sp|A1A9R6|RUTB_ECOK1 Peroxyureidoacrylate/ureidoacrylate amidohydrolase RutB OS=Escherichia coli O1:K1 / APEC GN=rutB PE=3 SV=1 Back     alignment and function description
>sp|B7NLB5|RUTB_ECO7I Peroxyureidoacrylate/ureidoacrylate amidohydrolase RutB OS=Escherichia coli O7:K1 (strain IAI39 / ExPEC) GN=rutB PE=3 SV=1 Back     alignment and function description
>sp|B7MTF4|RUTB_ECO81 Peroxyureidoacrylate/ureidoacrylate amidohydrolase RutB OS=Escherichia coli O81 (strain ED1a) GN=rutB PE=3 SV=1 Back     alignment and function description
>sp|D5CZH1|RUTB_ECOKI Peroxyureidoacrylate/ureidoacrylate amidohydrolase RutB OS=Escherichia coli O18:K1:H7 (strain IHE3034 / ExPEC) GN=rutB PE=3 SV=1 Back     alignment and function description
>sp|B7MIF8|RUTB_ECO45 Peroxyureidoacrylate/ureidoacrylate amidohydrolase RutB OS=Escherichia coli O45:K1 (strain S88 / ExPEC) GN=rutB PE=3 SV=1 Back     alignment and function description
>sp|B1LIZ4|RUTB_ECOSM Peroxyureidoacrylate/ureidoacrylate amidohydrolase RutB OS=Escherichia coli (strain SMS-3-5 / SECEC) GN=rutB PE=3 SV=1 Back     alignment and function description
>sp|Q3Z3A3|RUTB_SHISS Peroxyureidoacrylate/ureidoacrylate amidohydrolase RutB OS=Shigella sonnei (strain Ss046) GN=rutB PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query174
224073989195 predicted protein [Populus trichocarpa] 0.977 0.871 0.836 4e-77
330318641200 isochorismatase hydrolase family protein 0.971 0.845 0.822 9e-77
255549910231 catalytic, putative [Ricinus communis] g 0.994 0.748 0.798 1e-74
297743245269 unnamed protein product [Vitis vinifera] 0.977 0.631 0.777 2e-72
225442575195 PREDICTED: peroxyureidoacrylate/ureidoac 0.977 0.871 0.777 5e-72
217069946201 unknown [Medicago truncatula] 0.971 0.840 0.763 4e-71
217073984195 unknown [Medicago truncatula] gi|3885026 0.954 0.851 0.771 5e-71
351727649271 uncharacterized protein LOC100527482 [Gl 0.954 0.612 0.783 2e-70
388503232177 unknown [Lotus japonicus] 0.965 0.949 0.763 1e-69
312281723196 unnamed protein product [Thellungiella h 0.971 0.862 0.735 2e-67
>gi|224073989|ref|XP_002304210.1| predicted protein [Populus trichocarpa] gi|222841642|gb|EEE79189.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  292 bits (747), Expect = 4e-77,   Method: Compositional matrix adjust.
 Identities = 143/171 (83%), Positives = 156/171 (91%), Gaps = 1/171 (0%)

Query: 1   MADTKFNNTALLVIDMQNDFILDDGLMRVDGGKAIVPNVIKAVEIARQHGILVVWVVREH 60
           MAD K+N TALLVIDMQNDFIL+DGLM+V+GGKAIVPNVIKAV+IARQ GILVVWVVREH
Sbjct: 1   MAD-KWNQTALLVIDMQNDFILEDGLMKVNGGKAIVPNVIKAVDIARQRGILVVWVVREH 59

Query: 61  DPLGRDVELFRQHLYSTGTVGPTSKGSPGAELVDGLEIKEGDYKVVKMRFSAFFATHLNS 120
           DP GRD ELFR+HLYS G VGPTSKGS GAELVDGL IKEGDYK+VK RFSAFFATHL+S
Sbjct: 60  DPQGRDAELFRRHLYSPGNVGPTSKGSVGAELVDGLVIKEGDYKLVKTRFSAFFATHLHS 119

Query: 121 FLRTAGIDSLVIVGVQTPNCIRQTVFDAVELDYKSITIIVDATAAATPEIH 171
           FLRT GI SLVI GVQTPNC+RQTVFDAV LDY+ +T+IVDATAAATP+IH
Sbjct: 120 FLRTEGIKSLVISGVQTPNCVRQTVFDAVALDYQPVTVIVDATAAATPDIH 170

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|330318641|gb|AEC10981.1| isochorismatase hydrolase family protein [Camellia sinensis] Back     alignment and taxonomy information
>gi|255549910|ref|XP_002516006.1| catalytic, putative [Ricinus communis] gi|223544911|gb|EEF46426.1| catalytic, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|297743245|emb|CBI36112.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|225442575|ref|XP_002284348.1| PREDICTED: peroxyureidoacrylate/ureidoacrylate amidohydrolase RutB-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|217069946|gb|ACJ83333.1| unknown [Medicago truncatula] Back     alignment and taxonomy information
>gi|217073984|gb|ACJ85352.1| unknown [Medicago truncatula] gi|388502678|gb|AFK39405.1| unknown [Medicago truncatula] Back     alignment and taxonomy information
>gi|351727649|ref|NP_001236656.1| uncharacterized protein LOC100527482 [Glycine max] gi|255632452|gb|ACU16576.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|388503232|gb|AFK39682.1| unknown [Lotus japonicus] Back     alignment and taxonomy information
>gi|312281723|dbj|BAJ33727.1| unnamed protein product [Thellungiella halophila] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query174
TAIR|locus:2094927196 AT3G16190 [Arabidopsis thalian 0.977 0.867 0.651 2.1e-54
TIGR_CMR|CHY_0679191 CHY_0679 "isochorismatase fami 0.781 0.712 0.374 3.7e-16
TIGR_CMR|SPO_1471206 SPO_1471 "isochorismatase fami 0.839 0.708 0.339 4.5e-11
UNIPROTKB|P75897230 rutB "peroxyureidoacrylate / u 0.695 0.526 0.323 2.2e-09
TIGR_CMR|BA_3315193 BA_3315 "isochorismatase famil 0.724 0.652 0.276 2.2e-09
DICTYBASE|DDB_G0271336183 DDB_G0271336 [Dictyostelium di 0.770 0.732 0.264 2.9e-09
UNIPROTKB|Q88FY5213 nicF "Maleamate amidohydrolase 0.821 0.671 0.272 4.7e-09
TIGR_CMR|BA_0016179 BA_0016 "isochorismatase famil 0.775 0.754 0.285 7.6e-09
TIGR_CMR|SPO_1828213 SPO_1828 "isochorismatase fami 0.643 0.525 0.352 4.1e-08
UNIPROTKB|Q50575186 pncA "Pyrazinamidase/nicotinam 0.781 0.731 0.302 1.4e-07
TAIR|locus:2094927 AT3G16190 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 562 (202.9 bits), Expect = 2.1e-54, P = 2.1e-54
 Identities = 112/172 (65%), Positives = 134/172 (77%)

Query:     1 MADTKFNNTALLVIDMQNDFILDDGLMRVDGGKAIVPNVIKAVEIARQHGILVVWVVREH 60
             MA+ ++ NTALLVIDMQNDFI +  + +V GGK+IVPNVI+ VE+ARQ GILV+WVVREH
Sbjct:     1 MAE-RWRNTALLVIDMQNDFIEEGAVTQVKGGKSIVPNVIRVVELARQRGILVIWVVREH 59

Query:    61 DPLGRDVELFRQHLYSTGTVGPTSKGSPGAELVDGLEI-KEGDYKVVKMRFSAFFATHLN 119
             D  GRDVELFR+H YS+  VGP  KG+ GAELVDGL I +E DYK+VK RFSAFF+T+L+
Sbjct:    60 DRQGRDVELFRRHNYSSEKVGPVIKGTVGAELVDGLMINEEDDYKIVKTRFSAFFSTNLH 119

Query:   120 SFLRTAGIDSLVIVGVQTPNCIRQTVFDAVELDYKSXXXXXXXXXXXXPEIH 171
             SFL+T+G+  LVI GVQTPNCIRQTVFDAV LDY +            PEIH
Sbjct:   120 SFLQTSGVTKLVIAGVQTPNCIRQTVFDAVALDYPNVTVITDATAAATPEIH 171
GO:0003824 "catalytic activity" evidence=IEA;ISS
GO:0005737 "cytoplasm" evidence=ISM
GO:0008152 "metabolic process" evidence=IEA;ISS
TIGR_CMR|CHY_0679 CHY_0679 "isochorismatase family protein" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)] Back     alignment and assigned GO terms
TIGR_CMR|SPO_1471 SPO_1471 "isochorismatase family protein" [Ruegeria pomeroyi DSS-3 (taxid:246200)] Back     alignment and assigned GO terms
UNIPROTKB|P75897 rutB "peroxyureidoacrylate / ureidoacrylate amido hydrolase" [Escherichia coli K-12 (taxid:83333)] Back     alignment and assigned GO terms
TIGR_CMR|BA_3315 BA_3315 "isochorismatase family protein" [Bacillus anthracis str. Ames (taxid:198094)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0271336 DDB_G0271336 [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
UNIPROTKB|Q88FY5 nicF "Maleamate amidohydrolase" [Pseudomonas putida KT2440 (taxid:160488)] Back     alignment and assigned GO terms
TIGR_CMR|BA_0016 BA_0016 "isochorismatase family protein" [Bacillus anthracis str. Ames (taxid:198094)] Back     alignment and assigned GO terms
TIGR_CMR|SPO_1828 SPO_1828 "isochorismatase family protein" [Ruegeria pomeroyi DSS-3 (taxid:246200)] Back     alignment and assigned GO terms
UNIPROTKB|Q50575 pncA "Pyrazinamidase/nicotinamidase" [Mycobacterium tuberculosis (taxid:1773)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
P94573YWOC_BACSU3, ., -, ., -, ., -0.32330.89080.8201yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer3.5.1.n4LOW CONFIDENCE prediction!
3rd Layer3.5.1LOW CONFIDENCE prediction!
3rd Layer3.5.1.19LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query174
cd00431161 cd00431, cysteine_hydrolases, Cysteine hydrolases; 3e-45
pfam00857173 pfam00857, Isochorismatase, Isochorismatase family 3e-40
COG1335205 COG1335, PncA, Amidases related to nicotinamidase 4e-31
cd01014155 cd01014, nicotinamidase_related, Nicotinamidase_ r 6e-28
cd01015179 cd01015, CSHase, N-carbamoylsarcosine amidohydrola 1e-22
TIGR03614226 TIGR03614, RutB, pyrimidine utilization protein B 3e-21
cd01011196 cd01011, nicotinamidase, Nicotinamidase/pyrazinami 2e-20
PTZ00331212 PTZ00331, PTZ00331, alpha/beta hydrolase; Provisio 3e-17
PLN02621197 PLN02621, PLN02621, nicotinamidase 7e-16
cd01013203 cd01013, isochorismatase, Isochorismatase, also kn 1e-12
PRK11609212 PRK11609, PRK11609, nicotinamidase/pyrazinamidase; 2e-12
COG1535218 COG1535, EntB, Isochorismate hydrolase [Secondary 3e-12
PRK11440188 PRK11440, PRK11440, putative hydrolase; Provisiona 1e-08
cd01012157 cd01012, YcaC_related, YcaC related amidohydrolase 8e-06
>gnl|CDD|238245 cd00431, cysteine_hydrolases, Cysteine hydrolases; This family contains amidohydrolases, like CSHase (N-carbamoylsarcosine amidohydrolase), involved in creatine metabolism and nicotinamidase, converting nicotinamide to nicotinic acid and ammonia in the pyridine nucleotide cycle Back     alignment and domain information 
 Score =  145 bits (369), Expect = 3e-45
 Identities = 58/163 (35%), Positives = 84/163 (51%), Gaps = 9/163 (5%)

Query: 10  ALLVIDMQNDFILDDGLMRVDGGKAIVPNVIKAVEIARQHGILVVWVVREHDPLGRDVEL 69
           ALLV+DMQNDF+   G + + G   +VPN+ + +  AR  GI V++    H P   +   
Sbjct: 1   ALLVVDMQNDFV-PGGGLLLPGADELVPNINRLLAAARAAGIPVIFTRDWHPPDDPEFAE 59

Query: 70  FRQHLYSTGTVGPTSKGSPGAELVDGLEIKEGDYKVVKMRFSAFFATHLNSFLRTAGIDS 129
                          KG+ GAELV  L     D  + K R+SAF+ T L+  LR  GID+
Sbjct: 60  LLW-------PPHCVKGTEGAELVPELAPLPDDLVIEKTRYSAFYGTDLDELLRERGIDT 112

Query: 130 LVIVGVQTPNCIRQTVFDAVELDYKSITIIVDATAAATPEIHA 172
           LV+ G+ T  C+  T  DA++L Y+ + ++ DA A    E H 
Sbjct: 113 LVVCGIATDICVLATARDALDLGYR-VIVVEDACATRDEEDHE 154

It also contains isochorismatase, an enzyme that catalyzes the conversion of isochorismate to 2,3-dihydroxybenzoate and pyruvate, via the hydrolysis of the vinyl ether bond, and other related enzymes with unknown function. Length = 161
>gnl|CDD|216156 pfam00857, Isochorismatase, Isochorismatase family Back     alignment and domain information
>gnl|CDD|224254 COG1335, PncA, Amidases related to nicotinamidase [Secondary metabolites biosynthesis, transport, and catabolism] Back     alignment and domain information
>gnl|CDD|238496 cd01014, nicotinamidase_related, Nicotinamidase_ related amidohydrolases Back     alignment and domain information
>gnl|CDD|238497 cd01015, CSHase, N-carbamoylsarcosine amidohydrolase (CSHase) hydrolyzes N-carbamoylsarcosine to sarcosine, carbon dioxide and ammonia Back     alignment and domain information
>gnl|CDD|163356 TIGR03614, RutB, pyrimidine utilization protein B Back     alignment and domain information
>gnl|CDD|238493 cd01011, nicotinamidase, Nicotinamidase/pyrazinamidase (PZase) Back     alignment and domain information
>gnl|CDD|240363 PTZ00331, PTZ00331, alpha/beta hydrolase; Provisional Back     alignment and domain information
>gnl|CDD|178229 PLN02621, PLN02621, nicotinamidase Back     alignment and domain information
>gnl|CDD|238495 cd01013, isochorismatase, Isochorismatase, also known as 2,3 dihydro-2,3 dihydroxybenzoate synthase, catalyses the conversion of isochorismate, in the presence of water, to 2,3-dihydroxybenzoate and pyruvate, via the hydrolysis of a vinyl ether, an uncommon reaction in biological systems Back     alignment and domain information
>gnl|CDD|183228 PRK11609, PRK11609, nicotinamidase/pyrazinamidase; Provisional Back     alignment and domain information
>gnl|CDD|224452 COG1535, EntB, Isochorismate hydrolase [Secondary metabolites biosynthesis, transport, and catabolism] Back     alignment and domain information
>gnl|CDD|183137 PRK11440, PRK11440, putative hydrolase; Provisional Back     alignment and domain information
>gnl|CDD|238494 cd01012, YcaC_related, YcaC related amidohydrolases; E Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 174
cd01015179 CSHase N-carbamoylsarcosine amidohydrolase (CSHase 100.0
PRK11440188 putative hydrolase; Provisional 100.0
TIGR03614226 RutB pyrimidine utilization protein B. RL Proc Nat 100.0
cd01013203 isochorismatase Isochorismatase, also known as 2,3 100.0
PRK11609212 nicotinamidase/pyrazinamidase; Provisional 100.0
cd01011196 nicotinamidase Nicotinamidase/pyrazinamidase (PZas 100.0
PF00857174 Isochorismatase: Isochorismatase family; InterPro: 100.0
cd00431161 cysteine_hydrolases Cysteine hydrolases; This fami 100.0
PLN02621197 nicotinamidase 100.0
COG1335205 PncA Amidases related to nicotinamidase [Secondary 100.0
cd01014155 nicotinamidase_related Nicotinamidase_ related ami 100.0
PLN02743239 nicotinamidase 100.0
PTZ00331212 alpha/beta hydrolase; Provisional 100.0
cd01012157 YcaC_related YcaC related amidohydrolases; E.coli 100.0
COG1535218 EntB Isochorismate hydrolase [Secondary metabolite 100.0
KOG4003223 consensus Pyrazinamidase/nicotinamidase PNC1 [Defe 99.95
KOG4044201 consensus Mitochondrial associated endoribonucleas 99.86
PF02739169 5_3_exonuc_N: 5'-3' exonuclease, N-terminal resolv 84.79
>cd01015 CSHase N-carbamoylsarcosine amidohydrolase (CSHase) hydrolyzes N-carbamoylsarcosine to sarcosine, carbon dioxide and ammonia Back     alignment and domain information 
Probab=100.00  E-value=2.5e-41  Score=250.07  Aligned_cols=159  Identities=30%  Similarity=0.471  Sum_probs=139.3

Q ss_pred             EEEEEcccccccCCCCccccCCccchhHHHHHHHHHHHHcCCeEEEEecccCCCCCChhhhhhhhcCCCCCCCCCCCCCC
Q 030598           10 ALLVIDMQNDFILDDGLMRVDGGKAIVPNVIKAVEIARQHGILVVWVVREHDPLGRDVELFRQHLYSTGTVGPTSKGSPG   89 (174)
Q Consensus        10 aLlviD~Q~~f~~~~g~~~~~~~~~~~~~i~~l~~~~r~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~g   89 (174)
                      |||+|||||+|+.+++ +..+....++++++++++.+|++|+||||+++.+.+...+...|.....   ....+..|++|
T Consensus         1 ALlvID~Q~~f~~~~~-~~~~~~~~~~~ni~~l~~~ar~~~~~Vi~~~~~~~~~~~~~~~~~~~~~---~~~~~~~gs~~   76 (179)
T cd01015           1 ALLVIDLVEGYTQPGS-YLAPGIAAALENVQRLLAAARAAGVPVIHTTVVYDPDGADGGLWARKVP---AMSDLVEGSPL   76 (179)
T ss_pred             CEEEEEeecceeCCCC-ccccchHHHHHHHHHHHHHHHHcCCCEEEEEeeECCccCccchhhhccc---ccccccCCCCc
Confidence            7999999999998644 5667778999999999999999999999999877665444444432211   11346789999


Q ss_pred             CccccCCCCCCCCeEEeCCCCCCCCCCChHHHHHHCCCCEEEEeeccCCHhHHHHHHHHHHCCCCeEEEecccccCCChh
Q 030598           90 AELVDGLEIKEGDYKVVKMRFSAFFATHLNSFLRTAGIDSLVIVGVQTPNCIRQTVFDAVELDYKSITIIVDATAAATPE  169 (174)
Q Consensus        90 ~~l~~~l~~~~~~~v~~K~~~s~f~~~~l~~~L~~~gi~~lii~G~~t~~CV~~Ta~~a~~~G~~~v~vv~Da~~~~~~~  169 (174)
                      +++.++|.+.++++++.|++||+|.+|+|+.+|+++||++|+|+|++||+||++||++|+++||+ |+|++|||++.+++
T Consensus        77 ~~~~~~l~~~~~~~v~~K~~~saF~~t~L~~~L~~~gi~~vvi~G~~t~~CV~~Ta~~A~~~Gy~-v~vv~Da~a~~~~~  155 (179)
T cd01015          77 AAICDELAPQEDEMVLVKKYASAFFGTSLAATLTARGVDTLIVAGCSTSGCIRATAVDAMQHGFR-PIVVRECVGDRAPA  155 (179)
T ss_pred             cccccccCCCCCCEEEecCccCCccCCcHHHHHHHcCCCEEEEeeecccHhHHHHHHHHHHCCCe-EEEeeccccCCCHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999 99999999999999


Q ss_pred             hhhc
Q 030598          170 IHAG  173 (174)
Q Consensus       170 ~h~~  173 (174)
                      .|++
T Consensus       156 ~h~~  159 (179)
T cd01015         156 PHEA  159 (179)
T ss_pred             HHHH
Confidence            9975

CSHase is involved in one of the two alternative pathways for creatinine degradation to glycine in microorganisms.This CSHase-containing pathway degrades creatinine via N-methylhydantoin N-carbamoylsarcosine and sarcosine to glycine. Enzymes of this pathway are used in the diagnosis for renal disfunction, for determining creatinine levels in urine and serum.
>PRK11440 putative hydrolase; Provisional Back     alignment and domain information
>TIGR03614 RutB pyrimidine utilization protein B Back     alignment and domain information
>cd01013 isochorismatase Isochorismatase, also known as 2,3 dihydro-2,3 dihydroxybenzoate synthase, catalyses the conversion of isochorismate, in the presence of water, to 2,3-dihydroxybenzoate and pyruvate, via the hydrolysis of a vinyl ether, an uncommon reaction in biological systems Back     alignment and domain information
>PRK11609 nicotinamidase/pyrazinamidase; Provisional Back     alignment and domain information
>cd01011 nicotinamidase Nicotinamidase/pyrazinamidase (PZase) Back     alignment and domain information
>PF00857 Isochorismatase: Isochorismatase family; InterPro: IPR000868 This is a family of hydrolase enzymes Back     alignment and domain information
>cd00431 cysteine_hydrolases Cysteine hydrolases; This family contains amidohydrolases, like CSHase (N-carbamoylsarcosine amidohydrolase), involved in creatine metabolism and nicotinamidase, converting nicotinamide to nicotinic acid and ammonia in the pyridine nucleotide cycle Back     alignment and domain information
>PLN02621 nicotinamidase Back     alignment and domain information
>COG1335 PncA Amidases related to nicotinamidase [Secondary metabolites biosynthesis, transport, and catabolism] Back     alignment and domain information
>cd01014 nicotinamidase_related Nicotinamidase_ related amidohydrolases Back     alignment and domain information
>PLN02743 nicotinamidase Back     alignment and domain information
>PTZ00331 alpha/beta hydrolase; Provisional Back     alignment and domain information
>cd01012 YcaC_related YcaC related amidohydrolases; E Back     alignment and domain information
>COG1535 EntB Isochorismate hydrolase [Secondary metabolites biosynthesis, transport, and catabolism] Back     alignment and domain information
>KOG4003 consensus Pyrazinamidase/nicotinamidase PNC1 [Defense mechanisms] Back     alignment and domain information
>KOG4044 consensus Mitochondrial associated endoribonuclease MAR1 (isochorismatase superfamily) [General function prediction only] Back     alignment and domain information
>PF02739 5_3_exonuc_N: 5'-3' exonuclease, N-terminal resolvase-like domain; InterPro: IPR020046 The N-terminal and internal 5'3'-exonuclease domains are commonly found together, and are most often associated with 5' to 3' nuclease activities Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query174
3hu5_A204 Crystal Structure Of Isochorismatase Family Protein 1e-28
3eef_A182 Crystal Structure Of N-Carbamoylsarcosine Amidase F 3e-15
3hb7_A204 The Crystal Structure Of An Isochorismatase-Like Hy 1e-13
3irv_A233 Crystal Structure Of Cysteine Hydrolase Pspph_2384 8e-10
1nba_A264 Crystal Structure Analysis, Refinement And Enzymati 1e-09
1im5_A180 Crystal Structure Of Pyrazinamidase Of Pyrococcus H 7e-09
3s2s_A217 The Crystal Structure Of PyrazinamidaseNICOTINAMIDA 2e-08
3kl2_A226 Crystal Structure Of A Putative Isochorismatase Fro 1e-07
3lqy_A190 Crystal Structure Of Putative Isochorismatase Hydro 4e-07
2h0r_A216 Structure Of The Yeast Nicotinamidase Pnc1p Length 5e-07
2a67_A167 Crystal Structure Of Isochorismatase Family Protein 6e-07
4h17_A197 Crystal Structure Of An Isochorismatase (Pp1826) Fr 1e-06
3tb4_A223 Crystal Structure Of The Isc Domain Of Vibb Length 2e-06
3pl1_A186 Determination Of The Crystal Structure Of The Pyraz 4e-06
3r77_A209 Crystal Structure Of The D38a Mutant Of Isochorisma 5e-06
3tg2_A223 Crystal Structure Of The Isc Domain Of Vibb In Comp 6e-06
2fq1_A287 Crystal Structure Of The Two-Domain Non-Ribosomal P 1e-05
3v8e_A216 Crystal Structure Of The Yeast Nicotinamidase Pnc1p 1e-05
3oqp_A211 Crystal Structure Of A Putative Isochorismatase (Bx 2e-05
3o90_A211 High Resolution Crystal Structures Of Streptococcus 2e-05
3ot4_A236 Structure And Catalytic Mechanism Of Bordetella Bro 2e-05
1j2r_A199 Crystal Structure Of Escherichia Coli Gene Product 5e-05
1nf9_A207 Crystal Structure Of Phzd Protein From Pseudomonas 7e-05
1nf8_A207 Crystal Structure Of Phzd Protein Active Site Mutan 7e-05
3mcw_A198 Crystal Structure Of An A Putative Hydrolase Of The 1e-04
3o94_A211 High Resolution Crystal Structures Of Streptococcus 3e-04
3o91_A211 High Resolution Crystal Structures Of Streptococcus 5e-04
>pdb|3HU5|A Chain A, Crystal Structure Of Isochorismatase Family Protein From Desulfovibrio Vulgaris Subsp. Vulgaris Str. Hildenborough Length = 204 Back     alignment and structure 
Iteration: 1

 Score =  122 bits (305), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 66/150 (44%), Positives = 84/150 (56%), Gaps = 1/150 (0%)
Query: 4   TKFNNTALLVIDMQNDFILDDGLMRVDGGKAIVPNVIKAVEIARQHGILVVWVVREHDPL 63
           T+    AL +ID QNDF+L      V+G    VP +   +  AR  G  V+ VVR H   
Sbjct: 4   TRNRTVALAIIDXQNDFVLPGAPACVEGAXGTVPVIAGLLAKARAEGWXVLHVVRAHRAD 63
Query: 64  GRDVELFRQHLYSTGTVGPTSKGSPGAELVDGLEIKEGDYKVVKMRFSAFFATHLNSFLR 123
           G D E  R+HL+  G  G    G+PGAE+V GLE   G+  +VK RFSAF  T  +  LR
Sbjct: 64  GSDAEKSREHLFLEGG-GLCVAGTPGAEIVAGLEPASGETVLVKTRFSAFXGTECDXLLR 122
Query: 124 TAGIDSLVIVGVQTPNCIRQTVFDAVELDY 153
             G+D+L++ G Q PNCIR T  DA  LDY
Sbjct: 123 RRGVDTLLVSGTQYPNCIRGTAVDAFALDY 152
>pdb|3EEF|A Chain A, Crystal Structure Of N-Carbamoylsarcosine Amidase From Thermoplasma Acidophilum Length = 182 Back     alignment and structure
>pdb|3HB7|A Chain A, The Crystal Structure Of An Isochorismatase-Like Hydrolase From Alkaliphilus Metalliredigens To 2.3a Length = 204 Back     alignment and structure
>pdb|3IRV|A Chain A, Crystal Structure Of Cysteine Hydrolase Pspph_2384 From Pseudomonas Syringae Pv. Phaseolicola 1448a Length = 233 Back     alignment and structure
>pdb|1NBA|A Chain A, Crystal Structure Analysis, Refinement And Enzymatic Reaction Mechanism Of N-Carbamoylsarcosine Amidohydrolase From Arthrobacter Sp. At 2.0 Angstroms Resolution Length = 264 Back     alignment and structure
>pdb|1IM5|A Chain A, Crystal Structure Of Pyrazinamidase Of Pyrococcus Horikoshii In Complex With Zinc Length = 180 Back     alignment and structure
>pdb|3S2S|A Chain A, The Crystal Structure Of PyrazinamidaseNICOTINAMIDASE FROM Streptococcus Mutans Ua159 Length = 217 Back     alignment and structure
>pdb|3KL2|A Chain A, Crystal Structure Of A Putative Isochorismatase From Streptomyces Avermitilis Length = 226 Back     alignment and structure
>pdb|3LQY|A Chain A, Crystal Structure Of Putative Isochorismatase Hydrolase From Oleispira Antarctica Length = 190 Back     alignment and structure
>pdb|2H0R|A Chain A, Structure Of The Yeast Nicotinamidase Pnc1p Length = 216 Back     alignment and structure
>pdb|2A67|A Chain A, Crystal Structure Of Isochorismatase Family Protein Length = 167 Back     alignment and structure
>pdb|4H17|A Chain A, Crystal Structure Of An Isochorismatase (Pp1826) From Pseudomonas Putida Kt2440 At 1.60 A Resolution Length = 197 Back     alignment and structure
>pdb|3TB4|A Chain A, Crystal Structure Of The Isc Domain Of Vibb Length = 223 Back     alignment and structure
>pdb|3PL1|A Chain A, Determination Of The Crystal Structure Of The Pyrazinamidase From M.Tuberculosis : A Structure-Function Analysis For Prediction Resistance To Pyrazinamide Length = 186 Back     alignment and structure
>pdb|3R77|A Chain A, Crystal Structure Of The D38a Mutant Of Isochorismatase Phzd From Pseudomonas Fluorescens 2-79 In Complex With 2-Amino-2- Desoxyisochorismate Adic Length = 209 Back     alignment and structure
>pdb|3TG2|A Chain A, Crystal Structure Of The Isc Domain Of Vibb In Complex With Isochorismate Length = 223 Back     alignment and structure
>pdb|2FQ1|A Chain A, Crystal Structure Of The Two-Domain Non-Ribosomal Peptide Synthetase Entb Containing Isochorismate Lyase And Aryl-Carrier Protein Domains Length = 287 Back     alignment and structure
>pdb|3V8E|A Chain A, Crystal Structure Of The Yeast Nicotinamidase Pnc1p Bound To The Inhibitor Nicotinaldehyde Length = 216 Back     alignment and structure
>pdb|3OQP|A Chain A, Crystal Structure Of A Putative Isochorismatase (Bxe_a0706) From Burkholderia Xenovorans Lb400 At 1.22 A Resolution Length = 211 Back     alignment and structure
>pdb|3O90|A Chain A, High Resolution Crystal Structures Of Streptococcus Pneumoniae Nicotinamidase With Trapped Intermediates Provide Insights Into Catalytic Mechanism And Inhibition By Aldehydes Length = 211 Back     alignment and structure
>pdb|3OT4|A Chain A, Structure And Catalytic Mechanism Of Bordetella Bronchiseptica Nicf Length = 236 Back     alignment and structure
>pdb|1J2R|A Chain A, Crystal Structure Of Escherichia Coli Gene Product Yecd At 1.3 A Resolution Length = 199 Back     alignment and structure
>pdb|1NF9|A Chain A, Crystal Structure Of Phzd Protein From Pseudomonas Aeruginosa Length = 207 Back     alignment and structure
>pdb|1NF8|A Chain A, Crystal Structure Of Phzd Protein Active Site Mutant With Substrate Length = 207 Back     alignment and structure
>pdb|3MCW|A Chain A, Crystal Structure Of An A Putative Hydrolase Of The Isochorismatase Family (Cv_1320) From Chromobacterium Violaceum Atcc 12472 At 1.06 A Resolution Length = 198 Back     alignment and structure
>pdb|3O94|A Chain A, High Resolution Crystal Structures Of Streptococcus Pneumoniae Nicotinamidase With Trapped Intermediates Provide Insights Into Catalytic Mechanism And Inhibition By Aldehydes Length = 211 Back     alignment and structure
>pdb|3O91|A Chain A, High Resolution Crystal Structures Of Streptococcus Pneumoniae Nicotinamidase With Trapped Intermediates Provide Insights Into Catalytic Mechanism And Inhibition By Aldehydes Length = 211 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query174
3hu5_A204 Isochorismatase family protein; structural genomic 6e-63
1nba_A264 N-carbamoylsarcosine amidohydrolase; hydrolase(IN 2e-59
3hb7_A204 Isochorismatase hydrolase; PS structural genomics, 4e-58
3eef_A182 N-carbamoylsarcosine amidase related protein; stru 6e-58
3ot4_A236 Putative isochorismatase; NICF, maleamate hydrolas 3e-56
3irv_A233 Cysteine hydrolase; structural genomics, PSI-2, pr 1e-55
2fq1_A287 Isochorismatase; ENTB, NRPS, multi-domain, ACP, hy 5e-55
1nf9_A207 Phenazine biosynthesis protein PHZD; isochorismata 4e-54
3kl2_A226 Putative isochorismatase; structural genomics, unk 7e-53
3txy_A199 Isochorismatase family protein family; structural 8e-53
3o94_A211 Nicotinamidase; hydrolase; 1.60A {Streptococcus pn 9e-52
1im5_A180 180AA long hypothetical pyrazinamidase/nicotinamid 1e-51
1j2r_A199 Hypothetical isochorismatase family protein YECD; 7e-48
3oqp_A211 Putative isochorismatase; catalytic triad, structu 1e-45
3gbc_A186 Pyrazinamidase/nicotinamidas PNCA; nicotinamidase 9e-43
3lqy_A190 Putative isochorismatase hydrolase; structural gen 1e-42
3r2j_A227 Alpha/beta-hydrolase-like protein; nicotinamidase, 4e-42
2wt9_A235 Nicotinamidase; hydrolase, pyrazinamidase; HET: GO 1e-41
2a67_A167 Isochorismatase family protein; structural genomic 1e-38
3mcw_A198 Putative hydrolase; isochorismatase family, struct 1e-36
3v8e_A216 Nicotinamidase; hydrolase; HET: JJJ; 2.71A {Saccha 3e-36
1yac_A208 Ycacgp, YCAC gene product; unknown bacterial hydro 3e-24
1yzv_A204 Hypothetical protein; structural genomics, PSI, pr 4e-20
1x9g_A200 Putative MAR1; structural genomics, protein struct 3e-17
2b34_A199 F35G2.2, MAR1 ribonuclease; isochorismatase family 3e-16
>3hu5_A Isochorismatase family protein; structural genomics, protein structure INI NEW YORK structural genomix research consortium, nysgxrc; 1.50A {Desulfovibrio vulgaris} Length = 204 Back     alignment and structure
 Score =  191 bits (488), Expect = 6e-63
 Identities = 73/172 (42%), Positives = 98/172 (56%), Gaps = 2/172 (1%)

Query: 1   MADTKFNNTALLVIDMQNDFILDDGLMRVDGGKAIVPNVIKAVEIARQHGILVVWVVREH 60
           M+ T+    AL +IDMQNDF+L      V+G    VP +   +  AR  G +V+ VVR H
Sbjct: 1   MSLTRNRTVALAIIDMQNDFVLPGAPACVEGAMGTVPVIAGLLAKARAEGWMVLHVVRAH 60

Query: 61  DPLGRDVELFRQHLYSTGTVGPTSKGSPGAELVDGLEIKEGDYKVVKMRFSAFFATHLNS 120
              G D E  R+HL+  G  G    G+PGAE+V GLE   G+  +VK RFSAF  T  + 
Sbjct: 61  RADGSDAEKSREHLFLEGG-GLCVAGTPGAEIVAGLEPASGETVLVKTRFSAFMGTECDM 119

Query: 121 FLRTAGIDSLVIVGVQTPNCIRQTVFDAVELDYKSITIIVDATAAATPEIHA 172
            LR  G+D+L++ G Q PNCIR T  DA  LDY  + ++ DA +A TP +  
Sbjct: 120 LLRRRGVDTLLVSGTQYPNCIRGTAVDAFALDYD-VVVVTDACSARTPGVAE 170
>1nba_A N-carbamoylsarcosine amidohydrolase; hydrolase(IN linear amides); 2.00A {Arthrobacter SP} SCOP: c.33.1.3 Length = 264 Back     alignment and structure
>3hb7_A Isochorismatase hydrolase; PS structural genomics, midwest center for structural genomics structure initiative; 2.30A {Alkaliphilus metalliredigens} Length = 204 Back     alignment and structure
>3eef_A N-carbamoylsarcosine amidase related protein; structural genomics, protein structure initiative, midwest center for structural genomics; 2.35A {Thermoplasma acidophilum} Length = 182 Back     alignment and structure
>3ot4_A Putative isochorismatase; NICF, maleamate hydrolase, hydrol; 2.40A {Bordetella bronchiseptica} PDB: 3uao_A Length = 236 Back     alignment and structure
>3irv_A Cysteine hydrolase; structural genomics, PSI-2, protein structure initiative, CY hydrolase; 1.60A {Pseudomonas syringae PV} Length = 233 Back     alignment and structure
>2fq1_A Isochorismatase; ENTB, NRPS, multi-domain, ACP, hydrolase; 2.30A {Escherichia coli} Length = 287 Back     alignment and structure
>1nf9_A Phenazine biosynthesis protein PHZD; isochorismatase, enzyme, phenazine pathway, hydrolase; HET: BOG; 1.50A {Pseudomonas aeruginosa} SCOP: c.33.1.3 PDB: 1nf8_A* 3r77_A* Length = 207 Back     alignment and structure
>3kl2_A Putative isochorismatase; structural genomics, unknown function, PSI-2, protein struct initiative; 2.30A {Streptomyces avermitilis} Length = 226 Back     alignment and structure
>3txy_A Isochorismatase family protein family; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.70A {Burkholderia thailandensis} Length = 199 Back     alignment and structure
>3o94_A Nicotinamidase; hydrolase; 1.60A {Streptococcus pneumoniae} PDB: 3o90_A 3o91_A* 3o92_A* 3o93_A* Length = 211 Back     alignment and structure
>1im5_A 180AA long hypothetical pyrazinamidase/nicotinamidase; pyrazinamide, tuberculosis, PZA resistance, drug resistance, metal ION catalysis; 1.65A {Pyrococcus horikoshii} SCOP: c.33.1.3 PDB: 1ilw_A Length = 180 Back     alignment and structure
>1j2r_A Hypothetical isochorismatase family protein YECD; parallel beta-sheet 3-2-1-4-5-6, alpha-beta-alpha motif, TET structural genomics; 1.30A {Escherichia coli} SCOP: c.33.1.3 Length = 199 Back     alignment and structure
>3oqp_A Putative isochorismatase; catalytic triad, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; 1.22A {Burkholderia xenovorans} Length = 211 Back     alignment and structure
>3r2j_A Alpha/beta-hydrolase-like protein; nicotinamidase, cytoplasmic; 2.68A {Leishmania infantum} Length = 227 Back     alignment and structure
>2wt9_A Nicotinamidase; hydrolase, pyrazinamidase; HET: GOL; 1.65A {Acinetobacter baumannii} PDB: 2wta_A* Length = 235 Back     alignment and structure
>2a67_A Isochorismatase family protein; structural genomics, PSI, protein structure initiative, MIDW center for structural genomics, MCSG; 2.00A {Enterococcus faecalis} Length = 167 Back     alignment and structure
>3mcw_A Putative hydrolase; isochorismatase family, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.06A {Chromobacterium violaceum} Length = 198 Back     alignment and structure
>3v8e_A Nicotinamidase; hydrolase; HET: JJJ; 2.71A {Saccharomyces cerevisiae} PDB: 2h0r_A Length = 216 Back     alignment and structure
>1yac_A Ycacgp, YCAC gene product; unknown bacterial hydrolase, three layer alpha-beta-alpha SA topology, ENTB homolog, cshase homolog; 1.80A {Escherichia coli} SCOP: c.33.1.3 Length = 208 Back     alignment and structure
>1yzv_A Hypothetical protein; structural genomics, PSI, protein structure initiative, STRU genomics of pathogenic protozoa consortium, SGPP; 2.00A {Trypanosoma cruzi} Length = 204 Back     alignment and structure
>1x9g_A Putative MAR1; structural genomics, protein structure initiative, SGPP, PSI structural genomics of pathogenic protozoa consortium; 2.41A {Leishmania donovani} SCOP: c.33.1.3 PDB: 1xn4_A Length = 200 Back     alignment and structure
>2b34_A F35G2.2, MAR1 ribonuclease; isochorismatase family, structural genomics, PSI, protein structure initiative; 2.14A {Caenorhabditis elegans} Length = 199 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query174
3hu5_A204 Isochorismatase family protein; structural genomic 100.0
3hb7_A204 Isochorismatase hydrolase; PS structural genomics, 100.0
3irv_A233 Cysteine hydrolase; structural genomics, PSI-2, pr 100.0
3o94_A211 Nicotinamidase; hydrolase; 1.60A {Streptococcus pn 100.0
3eef_A182 N-carbamoylsarcosine amidase related protein; stru 100.0
3lqy_A190 Putative isochorismatase hydrolase; structural gen 100.0
3tg2_A223 Vibriobactin-specific isochorismatase; hydrolase; 100.0
3ot4_A236 Putative isochorismatase; NICF, maleamate hydrolas 100.0
1im5_A180 180AA long hypothetical pyrazinamidase/nicotinamid 100.0
1nba_A264 N-carbamoylsarcosine amidohydrolase; hydrolase(IN 100.0
3kl2_A226 Putative isochorismatase; structural genomics, unk 100.0
3mcw_A198 Putative hydrolase; isochorismatase family, struct 100.0
1j2r_A199 Hypothetical isochorismatase family protein YECD; 100.0
3r2j_A227 Alpha/beta-hydrolase-like protein; nicotinamidase, 100.0
4h17_A197 Hydrolase, isochorismatase family; rossmann-like f 100.0
3oqp_A211 Putative isochorismatase; catalytic triad, structu 100.0
2a67_A167 Isochorismatase family protein; structural genomic 100.0
1nf9_A207 Phenazine biosynthesis protein PHZD; isochorismata 100.0
3gbc_A186 Pyrazinamidase/nicotinamidas PNCA; nicotinamidase 100.0
3v8e_A216 Nicotinamidase; hydrolase; HET: JJJ; 2.71A {Saccha 100.0
3txy_A199 Isochorismatase family protein family; structural 100.0
2wt9_A235 Nicotinamidase; hydrolase, pyrazinamidase; HET: GO 100.0
2fq1_A287 Isochorismatase; ENTB, NRPS, multi-domain, ACP, hy 100.0
1yac_A208 Ycacgp, YCAC gene product; unknown bacterial hydro 100.0
1yzv_A204 Hypothetical protein; structural genomics, PSI, pr 100.0
2b34_A199 F35G2.2, MAR1 ribonuclease; isochorismatase family 100.0
1x9g_A200 Putative MAR1; structural genomics, protein struct 100.0
>3hu5_A Isochorismatase family protein; structural genomics, protein structure INI NEW YORK structural genomix research consortium, nysgxrc; 1.50A {Desulfovibrio vulgaris} Back     alignment and structure
Probab=100.00  E-value=2.5e-46  Score=280.97  Aligned_cols=171  Identities=43%  Similarity=0.682  Sum_probs=152.2

Q ss_pred             CCCCCCCCeEEEEEcccccccCCCCccccCCccchhHHHHHHHHHHHHcCCeEEEEecccCCCCCChhhhhhhhcCCCCC
Q 030598            1 MADTKFNNTALLVIDMQNDFILDDGLMRVDGGKAIVPNVIKAVEIARQHGILVVWVVREHDPLGRDVELFRQHLYSTGTV   80 (174)
Q Consensus         1 ~~~~~~~~~aLlviD~Q~~f~~~~g~~~~~~~~~~~~~i~~l~~~~r~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (174)
                      |.--+|+++|||||||||+|+.++|.+.+++.+++++++++|++.+|+.|+||||+.+.++|.+.+...++...+.+. .
T Consensus         1 m~~~~~~~tALlvID~Q~~f~~~~g~l~~~~~~~iv~~i~~L~~~ar~~g~pVi~~~~~~~~~~~~~~~~~~~~~~~~-~   79 (204)
T 3hu5_A            1 MSLTRNRTVALAIIDMQNDFVLPGAPACVEGAMGTVPVIAGLLAKARAEGWMVLHVVRAHRADGSDAEKSREHLFLEG-G   79 (204)
T ss_dssp             -----CCCEEEEEECCBHHHHSTTSTTCCTTHHHHHHHHHHHHHHHHHHTCEEEEEECCBCTTSTTSCGGGGGGGSSS-C
T ss_pred             CCCCCCCCeEEEEECCchhhhCCCCcccccCHHHHHHHHHHHHHHHHHCCCeEEEEEcccCCCcccccccccccCCcc-c
Confidence            566789999999999999999888888888999999999999999999999999988888887766554444444432 3


Q ss_pred             CCCCCCCCCCccccCCCCCCCCeEEeCCCCCCCCCCChHHHHHHCCCCEEEEeeccCCHhHHHHHHHHHHCCCCeEEEec
Q 030598           81 GPTSKGSPGAELVDGLEIKEGDYKVVKMRFSAFFATHLNSFLRTAGIDSLVIVGVQTPNCIRQTVFDAVELDYKSITIIV  160 (174)
Q Consensus        81 ~~~~~g~~g~~l~~~l~~~~~~~v~~K~~~s~f~~~~l~~~L~~~gi~~lii~G~~t~~CV~~Ta~~a~~~G~~~v~vv~  160 (174)
                      ++|.+|++|+++.++|.|.+++.++.|++||+|.+|+|+.+|+++||++|+|||++|++||++||++|+++||+ |+|++
T Consensus        80 ~~~~~gt~g~ei~~~l~~~~~~~vi~K~~~saF~~t~L~~~L~~~gi~~lvi~G~~T~~CV~~Ta~da~~~Gy~-V~vv~  158 (204)
T 3hu5_A           80 GLCVAGTPGAEIVAGLEPASGETVLVKTRFSAFMGTECDMLLRRRGVDTLLVSGTQYPNCIRGTAVDAFALDYD-VVVVT  158 (204)
T ss_dssp             CSSBTTSGGGSBCTTCCCCTTCEEEECSSSSTTTTSSHHHHHHHTTCCEEEEEEECTTTHHHHHHHHHHHTTCE-EEEEE
T ss_pred             ccccCCCcccccccccCCCCCCEEEECCccCCCCCcCHHHHHHhCCCCeEEEeeeccchHHHHHHHHHHHCCCE-EEEeh
Confidence            67999999999999999999999999999999999999999999999999999999999999999999999999 99999


Q ss_pred             ccccCCChhhhhc
Q 030598          161 DATAAATPEIHAG  173 (174)
Q Consensus       161 Da~~~~~~~~h~~  173 (174)
                      |||++.+++.|++
T Consensus       159 Da~as~~~~~h~~  171 (204)
T 3hu5_A          159 DACSARTPGVAES  171 (204)
T ss_dssp             EEEECSSHHHHHH
T ss_pred             hhhCCCCHHHHHH
Confidence            9999999999974
>3hb7_A Isochorismatase hydrolase; PS structural genomics, midwest center for structural genomics structure initiative; 2.30A {Alkaliphilus metalliredigens} Back     alignment and structure
>3irv_A Cysteine hydrolase; structural genomics, PSI-2, protein structure initiative, CY hydrolase; 1.60A {Pseudomonas syringae PV} Back     alignment and structure
>3o94_A Nicotinamidase; hydrolase; 1.60A {Streptococcus pneumoniae} PDB: 3o90_A 3o91_A* 3o92_A* 3o93_A* 3s2s_A Back     alignment and structure
>3eef_A N-carbamoylsarcosine amidase related protein; structural genomics, protein structure initiative, midwest center for structural genomics; 2.35A {Thermoplasma acidophilum} Back     alignment and structure
>3tg2_A Vibriobactin-specific isochorismatase; hydrolase; HET: ISC PGE; 1.10A {Vibrio cholerae} PDB: 3tb4_A* Back     alignment and structure
>3ot4_A Putative isochorismatase; NICF, maleamate hydrolase, hydrol; 2.40A {Bordetella bronchiseptica} PDB: 3uao_A Back     alignment and structure
>1im5_A 180AA long hypothetical pyrazinamidase/nicotinamidase; pyrazinamide, tuberculosis, PZA resistance, drug resistance, metal ION catalysis; 1.65A {Pyrococcus horikoshii} SCOP: c.33.1.3 PDB: 1ilw_A Back     alignment and structure
>1nba_A N-carbamoylsarcosine amidohydrolase; hydrolase(IN linear amides); 2.00A {Arthrobacter SP} SCOP: c.33.1.3 Back     alignment and structure
>3kl2_A Putative isochorismatase; structural genomics, unknown function, PSI-2, protein struct initiative; 2.30A {Streptomyces avermitilis} SCOP: c.33.1.0 Back     alignment and structure
>3mcw_A Putative hydrolase; isochorismatase family, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.06A {Chromobacterium violaceum} Back     alignment and structure
>1j2r_A Hypothetical isochorismatase family protein YECD; parallel beta-sheet 3-2-1-4-5-6, alpha-beta-alpha motif, TET structural genomics; 1.30A {Escherichia coli} SCOP: c.33.1.3 Back     alignment and structure
>3r2j_A Alpha/beta-hydrolase-like protein; nicotinamidase, cytoplasmic; 2.68A {Leishmania infantum} Back     alignment and structure
>4h17_A Hydrolase, isochorismatase family; rossmann-like fold, structural genomics, joint center for ST genomics, JCSG; 1.60A {Pseudomonas putida KT2440} Back     alignment and structure
>3oqp_A Putative isochorismatase; catalytic triad, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; 1.22A {Burkholderia xenovorans} Back     alignment and structure
>2a67_A Isochorismatase family protein; structural genomics, PSI, protein structure initiative, MIDW center for structural genomics, MCSG; 2.00A {Enterococcus faecalis} Back     alignment and structure
>1nf9_A Phenazine biosynthesis protein PHZD; isochorismatase, enzyme, phenazine pathway, hydrolase; HET: BOG; 1.50A {Pseudomonas aeruginosa} SCOP: c.33.1.3 PDB: 1nf8_A* 3r77_A* Back     alignment and structure
>3v8e_A Nicotinamidase; hydrolase; HET: JJJ; 2.71A {Saccharomyces cerevisiae} PDB: 2h0r_A Back     alignment and structure
>3txy_A Isochorismatase family protein family; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.70A {Burkholderia thailandensis} SCOP: c.33.1.0 Back     alignment and structure
>2wt9_A Nicotinamidase; hydrolase, pyrazinamidase; HET: GOL; 1.65A {Acinetobacter baumannii} PDB: 2wta_A* Back     alignment and structure
>2fq1_A Isochorismatase; ENTB, NRPS, multi-domain, ACP, hydrolase; 2.30A {Escherichia coli} Back     alignment and structure
>1yac_A Ycacgp, YCAC gene product; unknown bacterial hydrolase, three layer alpha-beta-alpha SA topology, ENTB homolog, cshase homolog; 1.80A {Escherichia coli} SCOP: c.33.1.3 Back     alignment and structure
>1yzv_A Hypothetical protein; structural genomics, PSI, protein structure initiative, STRU genomics of pathogenic protozoa consortium, SGPP; 2.00A {Trypanosoma cruzi} Back     alignment and structure
>2b34_A F35G2.2, MAR1 ribonuclease; isochorismatase family, structural genomics, PSI, protein structure initiative; 2.14A {Caenorhabditis elegans} Back     alignment and structure
>1x9g_A Putative MAR1; structural genomics, protein structure initiative, SGPP, PSI structural genomics of pathogenic protozoa consortium; 2.41A {Leishmania donovani} SCOP: c.33.1.3 PDB: 1xn4_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 174
d1im5a_179 c.33.1.3 (A:) Pyrazinamidase/nicotinamidase {Archa 4e-30
d1nbaa_253 c.33.1.3 (A:) N-carbamoylsarcosine amidohydrolase 2e-29
d1j2ra_188 c.33.1.3 (A:) Hypothetical protein YecD {Escherich 5e-28
d1nf9a_207 c.33.1.3 (A:) Phenazine biosynthesis protein PhzD 5e-27
d1yaca_204 c.33.1.3 (A:) YcaC {Escherichia coli [TaxId: 562]} 3e-26
d1x9ga_192 c.33.1.3 (A:) Ribonuclease MAR1 {Leishmania donova 4e-25
>d1im5a_ c.33.1.3 (A:) Pyrazinamidase/nicotinamidase {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 179 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Isochorismatase-like hydrolases
superfamily: Isochorismatase-like hydrolases
family: Isochorismatase-like hydrolases
domain: Pyrazinamidase/nicotinamidase
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

 Score =  106 bits (265), Expect = 4e-30
 Identities = 45/168 (26%), Positives = 69/168 (41%), Gaps = 11/168 (6%)

Query: 9   TALLVIDMQNDFILDDGLMRVDGGKAIVPNVIKAVEIARQHGILVVWVVREHDPLGRDVE 68
            AL+V+DMQ DF +  G + V  G  I+P V + +   ++ G L+V     H        
Sbjct: 3   EALIVVDMQRDF-MPGGALPVPEGDKIIPKVNEYIRKFKEKGALIVATRDWHPENH---- 57

Query: 69  LFRQHLYSTGTVGPTSKGSPGAELVDG----LEIKEGDYKVVKMRFSAFFATHLNSFLRT 124
                           + +PGAE V        I     +  K  +S F  T L   LR 
Sbjct: 58  -ISFRERGGPWPRHCVQNTPGAEFVVDLPEDAVIISKATEPDKEAYSGFEGTDLAKILRG 116

Query: 125 AGIDSLVIVGVQTPNCIRQTVFDAVELDYKSITIIVDATAAATPEIHA 172
            G+  + I GV T  C+R T  DA++  ++ + ++ DA     PE   
Sbjct: 117 NGVKRVYICGVATEYCVRATALDALKHGFE-VYLLRDAVKGIKPEDEE 163
>d1nbaa_ c.33.1.3 (A:) N-carbamoylsarcosine amidohydrolase {Arthrobacter sp. [TaxId: 1667]} Length = 253 Back     information, alignment and structure
>d1j2ra_ c.33.1.3 (A:) Hypothetical protein YecD {Escherichia coli [TaxId: 562]} Length = 188 Back     information, alignment and structure
>d1nf9a_ c.33.1.3 (A:) Phenazine biosynthesis protein PhzD {Pseudomonas aeruginosa [TaxId: 287]} Length = 207 Back     information, alignment and structure
>d1yaca_ c.33.1.3 (A:) YcaC {Escherichia coli [TaxId: 562]} Length = 204 Back     information, alignment and structure
>d1x9ga_ c.33.1.3 (A:) Ribonuclease MAR1 {Leishmania donovani [TaxId: 5661]} Length = 192 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query174
d1nbaa_253 N-carbamoylsarcosine amidohydrolase {Arthrobacter 100.0
d1j2ra_188 Hypothetical protein YecD {Escherichia coli [TaxId 100.0
d1nf9a_207 Phenazine biosynthesis protein PhzD {Pseudomonas a 100.0
d1im5a_179 Pyrazinamidase/nicotinamidase {Archaeon Pyrococcus 100.0
d1yaca_204 YcaC {Escherichia coli [TaxId: 562]} 100.0
d1x9ga_192 Ribonuclease MAR1 {Leishmania donovani [TaxId: 566 99.98
d1a9xa3127 Carbamoyl phosphate synthetase (CPS), large subuni 85.37
d1a9xa4121 Carbamoyl phosphate synthetase (CPS), large subuni 83.22
>d1nbaa_ c.33.1.3 (A:) N-carbamoylsarcosine amidohydrolase {Arthrobacter sp. [TaxId: 1667]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Isochorismatase-like hydrolases
superfamily: Isochorismatase-like hydrolases
family: Isochorismatase-like hydrolases
domain: N-carbamoylsarcosine amidohydrolase
species: Arthrobacter sp. [TaxId: 1667]

Probab=100.00  E-value=8.7e-44  Score=272.68  Aligned_cols=162  Identities=25%  Similarity=0.380  Sum_probs=145.5

Q ss_pred             CCeEEEEEcccccccCCCCccccCCccchhHHHHHHHHHHHHcCCeEEEEecccCCCCCC-----hhhhhhhhcCCCCCC
Q 030598            7 NNTALLVIDMQNDFILDDGLMRVDGGKAIVPNVIKAVEIARQHGILVVWVVREHDPLGRD-----VELFRQHLYSTGTVG   81 (174)
Q Consensus         7 ~~~aLlviD~Q~~f~~~~g~~~~~~~~~~~~~i~~l~~~~r~~~~~vi~~~~~~~~~~~~-----~~~~~~~~~~~~~~~   81 (174)
                      +|+|||||||||+|+.+++.+..++.+.+++++++|+++||++|+||||+++.+++.+..     +..|..+.    ...
T Consensus        37 ~r~ALlvID~QndF~~p~~~~~~~~~~~iv~~i~~Li~aaR~~gipVI~~~~~~~~~~~~~~~~~~~~~~~~~----~~~  112 (253)
T d1nbaa_          37 NRPAVIHIDLANAWTQPGHPFSCPGMETIIPNVQRINEAARAKGVPVFYTTNVYRNRDASSGTNDMGLWYSKI----PTE  112 (253)
T ss_dssp             SSEEEEEESCBHHHHSSSSTTCCSCHHHHHHHHHHHHHHHHHHTCCEEEEEECBSCCCTTSTTCSCGGGGGTS----CGG
T ss_pred             CcceEEEEcCcccccCCCCcccccCHHHHHHHHHHHHHHHHHcCCCEEEEEeccCCCcccccccccccccccc----Ccc
Confidence            699999999999999988888888889999999999999999999999999887765432     22332221    123


Q ss_pred             CCCCCCCCCccccCCCCCCCCeEEeCCCCCCCCCCChHHHHHHCCCCEEEEeeccCCHhHHHHHHHHHHCCCCeEEEecc
Q 030598           82 PTSKGSPGAELVDGLEIKEGDYKVVKMRFSAFFATHLNSFLRTAGIDSLVIVGVQTPNCIRQTVFDAVELDYKSITIIVD  161 (174)
Q Consensus        82 ~~~~g~~g~~l~~~l~~~~~~~v~~K~~~s~f~~~~l~~~L~~~gi~~lii~G~~t~~CV~~Ta~~a~~~G~~~v~vv~D  161 (174)
                      .+..|++|+++.++|.|.++|+++.|++||+|++|+|+.+|+++||++|||+|++||+||++|+++|+++||+ |+|++|
T Consensus       113 ~~~~gt~ga~i~~~l~p~~~d~vi~K~~~SaF~~T~L~~~Lr~~gI~~liv~Gv~Td~CV~~Ta~dA~~~Gy~-V~Vv~D  191 (253)
T d1nbaa_         113 TLPADSYWAQIDDRIAPADGEVVIEKNRASAFPGTNLELFLTSNRIDTLIVTGATAAGCVRHTVEDAIAKGFR-PIIPRE  191 (253)
T ss_dssp             GCBTTSGGGSBCGGGCCCTTCEEEEESSSSSSTTSSHHHHHHHTTCCEEEEEEECTTTHHHHHHHHHHHHTCE-EEEEGG
T ss_pred             ccCCCCcccccccccCCCCCCeeeeccccccccCccHHHHHhhhccceEEEEeecccchHHHHHHHHHHCCCE-EEEecc
Confidence            5778999999999999999999999999999999999999999999999999999999999999999999999 999999


Q ss_pred             cccCCChhhhhc
Q 030598          162 ATAAATPEIHAG  173 (174)
Q Consensus       162 a~~~~~~~~h~~  173 (174)
                      ||++++++.|++
T Consensus       192 A~as~~~e~h~~  203 (253)
T d1nbaa_         192 TIGDRVPGVVQW  203 (253)
T ss_dssp             GEECSSSSHHHH
T ss_pred             ccCCCCHHHHHH
Confidence            999999999974
>d1j2ra_ c.33.1.3 (A:) Hypothetical protein YecD {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1nf9a_ c.33.1.3 (A:) Phenazine biosynthesis protein PhzD {Pseudomonas aeruginosa [TaxId: 287]} Back     information, alignment and structure
>d1im5a_ c.33.1.3 (A:) Pyrazinamidase/nicotinamidase {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Back     information, alignment and structure
>d1yaca_ c.33.1.3 (A:) YcaC {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1x9ga_ c.33.1.3 (A:) Ribonuclease MAR1 {Leishmania donovani [TaxId: 5661]} Back     information, alignment and structure
>d1a9xa3 c.30.1.1 (A:1-127) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1a9xa4 c.30.1.1 (A:556-676) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]} Back     information, alignment and structure