Citrus Sinensis ID: 030601

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170----
Protein Sequence
MVYHSSFVDEEGVTKACGCPLLPLKSHIKGPAPASDQDRTDIVDEAITFFRANVFFRNFDIKSSADKLLIYLTFYINVALKRLEGRRTLAEGTKAIINLGLEKVPVPGEPNFPFPGLFALPQSQKEAELFRNYLKQIREETSGRLLSVAYRPNGTPNKWWLAFAKRKFMNIIVP
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccEEEEEccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccEcccccEccccccccccccccccccccHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHEccccccEcHHHHHHHHHHHcEEcc
Coil and Loop (DISEMBL)
mvyhssfvdeegvtkacgcpllplkshikgpapasdqdrtDIVDEAITFFRanvffrnfdikSSADKLLIYLTFYINVALKRLEGRRTLAEGTKAIINLglekvpvpgepnfpfpglfalpqsQKEAELFRNYLKQIREETSGRLLsvayrpngtpnKWWLAFAKRKFMNIIVP
Flexible Loop (DISEMBL)
mvyhssfvdeegvtkACGCPLLPLKSHIKGPAPASDQDRTDIVDEAITFFRANVFFRNFDIKSSADKLLIYLTFYINVALKRLEGRRTLAEGTKAIINLGLEKVPVPGEPNFPFPGLFALPQSQKEAELFRNYLKQIREEtsgrllsvayrpngtpnkwWLAFAKRKFMNIIVP
Low Complexity Region (SEG)
MVYHSSFVDEEGVTKACGCPLLPLKSHIKGPAPASDQDRTDIVDEAITFFRANVFFRNFDIKSSADKLLIYLTFYINVALKRLEGRRTLAEGTKAIINLGLEKVPVPGEPNFPFPGLFALPQSQKEAELFRNYLKQIREETSGRLLSVAYRPNGTPNKWWLAFAKRKFMNIIVP
Disordered region (IsUnstruct)
**********EGVTKACGCPLLPLKS*************TDIVDEAITFFRANVFFRNFDIKSSADKLLIYLTFYINVALKRLEGRRTLAEGTKAIINLGLEKVPVPGEPNFPFPGLFALPQSQKEAELFRNYLKQIREETSGRLLSVAYRPNGTPNKWWLAFAKRKFMNIIV*
Disordered Region (DISOPRED)
*VYHSSFVDEEGVTKACGCPLLPLKSHIKG*****DQDRTDIVDEAITFFRANVFFRNFDIKSSADKLLIYLTFYINVALK**************IINLGLEKVPVPGEPNFPFPGLFALP*******LFRNYLKQIREETSGRLLSVAYRPNGTPNKWWLAFAKRKFMNI***
Disordered Region (DISEMBL)
*********EEGVTKACGCPLLPLKSHIK*********RTDIVDEAITFFRANVFFRNFDIKSSADKLLIYLTFYINVALKRLEGRRTLAEGTKAIINLGLEKVPVPGEPNFPFPGLFALPQSQKEAELFRNYLKQIREETSGRLLSVAYRPNGTPNKWWLAFAKRKFMNIIVP
Disordered Region (DISPRO)
*****S*VDEEGVTKACGCPLLPLKSHIKGPAPASDQDRTDIVDEAITFFRANVFFRNFDIKSSADKLLIYLTFYINVALKRLEGRRTLAEGTKAIINLGLEKVPVPGEPNFPFPGLFALPQSQKEAELFRNYLKQIREETSGRLLSVAYRPNGTPNKWWLAFAKRKFMNIIVP
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MVYHSSFVDEEGVTKACGCPLLPLKSHIKGPAPASDQDRTDIVDEAITFFRANVFFRNFDIKSSADKLLIYLTFYINVALKRLEGRRTLAEGTKAIINLGLEKVPVPGEPNFPFPGLFALPQSQKEAELFRNYLKQIREETSGRLLSVAYRPNGTPNKWWLAFAKRKFMNIIVP
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	174	2.2.26 [Sep-21-2011]
Q9JM76	178	Actin-related protein 2/3	yes	no	0.954	0.932	0.485	2e-41
O15145	178	Actin-related protein 2/3	yes	no	0.954	0.932	0.479	4e-41
Q3T035	178	Actin-related protein 2/3	yes	no	0.954	0.932	0.479	4e-41
O96624	174	Actin-related protein 2/3	yes	no	0.971	0.971	0.418	1e-34
Q9Y7J4	174	Actin-related protein 2/3	yes	no	0.965	0.965	0.435	1e-34
Q9XWV3	183	Probable actin-related pr	yes	no	0.959	0.912	0.410	2e-32
Q05933	178	Actin-related protein 2/3	yes	no	0.959	0.938	0.393	2e-30
O15604	128	Probable actin-related pr	N/A	no	0.649	0.882	0.401	4e-14

>sp|Q9JM76|ARPC3_MOUSE Actin-related protein 2/3 complex subunit 3 OS=Mus musculus GN=Arpc3 PE=1 SV=3

 Score =  168 bits (425), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 83/171 (48%), Positives = 115/171 (67%), Gaps = 5/171 (2%)

Query: 2   VYHSSFVDEEGVTKACG-CPLLPLKSHIKGPAPASDQDRTDIVDEAITFFRANVFFRNFD 60
            YHSS +D +  TK  G   LLPL+S  KGPAP   +D TDIVDEAI +F+ANVFF+N++
Sbjct: 3   AYHSSLMDPD--TKLIGNMALLPLRSQFKGPAPRETKD-TDIVDEAIYYFKANVFFKNYE 59

Query: 61  IKSSADKLLIYLTFYINVALKRLEGRRTLAEGTKAIINLGLEKVPVPGEPNFPFPGLFAL 120
           IK+ AD+ LIY+T YI+  LK+L+   + ++G K +  LG+   P+PGEP FP   ++A 
Sbjct: 60  IKNEADRTLIYITLYISECLKKLQKCNSKSQGEKEMYTLGITNFPIPGEPGFPLNAIYAK 119

Query: 121 PQSQKEAELFRNYLKQIREETSGRLLSVAYRPNG-TPNKWWLAFAKRKFMN 170
           P S++E E+ R YL+Q+R+ET  RL    + P    P+KWW  F KR+FMN
Sbjct: 120 PASKQEDEMMRAYLQQLRQETGLRLCEKVFDPQSDKPSKWWTCFVKRQFMN 170

Functions as component of the Arp2/3 complex which is involved in regulation of actin polymerization and together with an activating nucleation-promoting factor (NPF) mediates the formation of branched actin networks.
Mus musculus (taxid: 10090)

>sp|O15145|ARPC3_HUMAN Actin-related protein 2/3 complex subunit 3 OS=Homo sapiens GN=ARPC3 PE=1 SV=3

 Score =  167 bits (422), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 82/171 (47%), Positives = 116/171 (67%), Gaps = 5/171 (2%)

Query: 2   VYHSSFVDEEGVTKACG-CPLLPLKSHIKGPAPASDQDRTDIVDEAITFFRANVFFRNFD 60
            YHSS +D +  TK  G   LLP++S  KGPAP   +D TDIVDEAI +F+ANVFF+N++
Sbjct: 3   AYHSSLMDPD--TKLIGNMALLPIRSQFKGPAPRETKD-TDIVDEAIYYFKANVFFKNYE 59

Query: 61  IKSSADKLLIYLTFYINVALKRLEGRRTLAEGTKAIINLGLEKVPVPGEPNFPFPGLFAL 120
           IK+ AD+ LIY+T YI+  LK+L+   + ++G K +  LG+   P+PGEP FP   ++A 
Sbjct: 60  IKNEADRTLIYITLYISECLKKLQKCNSKSQGEKEMYTLGITNFPIPGEPGFPLNAIYAK 119

Query: 121 PQSQKEAELFRNYLKQIREETSGRLLSVAYRP-NGTPNKWWLAFAKRKFMN 170
           P +++E E+ R YL+Q+R+ET  RL    + P N  P+KWW  F KR+FMN
Sbjct: 120 PANKQEDEVMRAYLQQLRQETGLRLCEKVFDPQNDKPSKWWTCFVKRQFMN 170

Functions as component of the Arp2/3 complex which is involved in regulation of actin polymerization and together with an activating nucleation-promoting factor (NPF) mediates the formation of branched actin networks.

Homo sapiens (taxid: 9606)

>sp|Q3T035|ARPC3_BOVIN Actin-related protein 2/3 complex subunit 3 OS=Bos taurus GN=ARPC3 PE=1 SV=3

 Score =  167 bits (422), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 82/171 (47%), Positives = 116/171 (67%), Gaps = 5/171 (2%)

Query: 2   VYHSSFVDEEGVTKACG-CPLLPLKSHIKGPAPASDQDRTDIVDEAITFFRANVFFRNFD 60
            YHSS +D +  TK  G   LLP++S  KGPAP   +D TDIVDEAI +F+ANVFF+N++
Sbjct: 3   AYHSSLMDPD--TKLIGNMALLPIRSQFKGPAPRETKD-TDIVDEAIYYFKANVFFKNYE 59

Query: 61  IKSSADKLLIYLTFYINVALKRLEGRRTLAEGTKAIINLGLEKVPVPGEPNFPFPGLFAL 120
           IK+ AD+ LIY+T YI+  LK+L+   + ++G K +  LG+   P+PGEP FP   ++A 
Sbjct: 60  IKNEADRTLIYITLYISECLKKLQKCNSKSQGEKEMYTLGITNFPIPGEPGFPLNAIYAK 119

Query: 121 PQSQKEAELFRNYLKQIREETSGRLLSVAYRP-NGTPNKWWLAFAKRKFMN 170
           P +++E E+ R YL+Q+R+ET  RL    + P N  P+KWW  F KR+FMN
Sbjct: 120 PANKQEDEVMRAYLQQLRQETGLRLCEKVFDPQNDKPSKWWTCFVKRQFMN 170

Functions as component of the Arp2/3 complex which is involved in regulation of actin polymerization and together with an activating nucleation-promoting factor (NPF) mediates the formation of branched actin networks.

Bos taurus (taxid: 9913)

>sp|O96624|ARPC3_DICDI Actin-related protein 2/3 complex subunit 3 OS=Dictyostelium discoideum GN=arcC PE=1 SV=1

 Score =  145 bits (367), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 72/172 (41%), Positives = 102/172 (59%), Gaps = 3/172 (1%)

Query: 1   MVYHSSFVDEEGVTKACG-CPLLPLKSHIKGPAPASDQDRTDIVDEAITFFRANVFFRNF 59
           MVYHS F DE    +  G  P+LPLK+  KGPAP  D +  DI+DEA+  F+AN+ FRNF
Sbjct: 1   MVYHSQFNDESAGFRLVGNVPILPLKTTHKGPAPKGDANSVDIIDEALDLFKANILFRNF 60

Query: 60  DIKSSADKLLIYLTFYINVALKRLEGRRTLAEGTKAIINLGLEKVPVPGEPNFPFPGLFA 119
           +++ + D++LIYLT YI   L ++      A+  KA+  +  E+  +PGE  FP  GL  
Sbjct: 61  EVQGNGDRVLIYLTLYITKCLLKIAPMNK-ADAEKALFLIAQEQFSIPGESAFPLGGLVT 119

Query: 120 LPQSQKEAELFRNYLKQIREETSGRLLSVAYRPN-GTPNKWWLAFAKRKFMN 170
           +P ++  A+  R Y  Q+R E   RL    Y  +    NKWW+ F+KRKF+N
Sbjct: 120 VPNTRDAADTLRQYFTQLRLELGVRLCQRVYAVDPSKANKWWICFSKRKFLN 171

Functions as component of the Arp2/3 complex which is involved in regulation of actin polymerization and together with an activating nucleation-promoting factor (NPF) mediates the formation of branched actin networks. Seems to contact the pointed end of the daughter actin filament. The Arp2/3 complex is involved in organizing the actin system in cell motility and chemotaxis, in phagocytosis and macropinocytosis, at late steps of endosome processing, and in mitosis. In concert with a group of other proteins, the Arp2/3 complex plays a general role in the rapid activation and adaptation of the actin system to its multiple functions.

Dictyostelium discoideum (taxid: 44689)

>sp|Q9Y7J4|ARPC3_SCHPO Actin-related protein 2/3 complex subunit 3 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=arc3 PE=1 SV=1

 Score =  145 bits (366), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 74/170 (43%), Positives = 101/170 (59%), Gaps = 2/170 (1%)

Query: 2   VYHSSFVDEEGVTKACGCPLLPLKSHIKGPAPASDQDRTDIVDEAITFFRANVFFRNFDI 61
            YHSSF+    V       +LPLK+  +GPA  +D+ + DI+DE I  FRAN FFRNF+I
Sbjct: 3   AYHSSFLSLTDVPTTGNIAMLPLKTKFRGPAYPADESQMDIIDECIGLFRANCFFRNFEI 62

Query: 62  KSSADKLLIYLTFYINVALKRLEGRRTLAEGTKAIINLGLEKVPVPGEPNFPFPGLFALP 121
           K  AD+ LIY T +I+  L R+ G     +  + + +L LE   +PG   FP   L+A P
Sbjct: 63  KGPADRTLIYGTLFISECLGRVNG-LNYRDAERQLNSLALENFSIPGSAGFPLNALYAPP 121

Query: 122 QSQKEAELFRNYLKQIREETSGRLLSVAY-RPNGTPNKWWLAFAKRKFMN 170
            S ++AE+ R YL Q R+E + RLLS  Y      P+KWW  F+KR+FMN
Sbjct: 122 LSPQDAEIMRTYLTQFRQELAYRLLSHVYATEKDHPSKWWTCFSKRRFMN 171

Functions as component of the Arp2/3 complex which is involved in regulation of actin polymerization and together with an activating nucleation-promoting factor (NPF) mediates the formation of branched actin networks.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|Q9XWV3|ARPC3_CAEEL Probable actin-related protein 2/3 complex subunit 3 OS=Caenorhabditis elegans GN=arx-5 PE=3 SV=1

 Score =  138 bits (347), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 71/173 (41%), Positives = 104/173 (60%), Gaps = 6/173 (3%)

Query: 2   VYHSSFVDEEGVTKACGCPL--LPLKSHIKGPAPASDQDRTDIVDEAITFFRANVFFRNF 59
            YHS F  E  V       +  LP++++ KGPAP ++QD  DI+DEA+T+F+ N+FFR F
Sbjct: 3   AYHSKFDTELKVLPLGNTNMGKLPIRTNFKGPAPQTNQD--DIIDEALTYFKPNIFFREF 60

Query: 60  DIKSSADKLLIYLTFYINVALKRLEGRRTLAEGTK-AIINLGLEKVPVPGEPNFPFPGLF 118
           +IK  AD+ +IYL FYI   L++L+       G K          +P+PGE  FP   ++
Sbjct: 61  EIKGPADRTMIYLIFYITECLRKLQKSPNKIAGQKDLHALALSHLLPIPGENGFPLNSMY 120

Query: 119 ALPQSQKEAELFRNYLKQIREETSGRLLSVAY-RPNGTPNKWWLAFAKRKFMN 170
             PQS+ + +  R YL+QIR+E   RL  +A+  P   P+KWWL FA+R+FM+
Sbjct: 121 KAPQSKPDEDEMRAYLQQIRQEIGARLCDLAFPDPQDRPSKWWLCFARRRFMD 173

Functions as component of the Arp2/3 complex which is involved in regulation of actin polymerization and together with an activating nucleation-promoting factor (NPF) mediates the formation of branched actin networks.

Caenorhabditis elegans (taxid: 6239)

>sp|Q05933|ARPC3_YEAST Actin-related protein 2/3 complex subunit 3 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=ARC18 PE=1 SV=1

 Score =  132 bits (331), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 68/173 (39%), Positives = 101/173 (58%), Gaps = 6/173 (3%)

Query: 3   YHSSFVDEEGVTKACG-CPLLPLKSHIKGPAPASDQDRTDIVDEAITFFRANVFFRNFDI 61
           YHS+F  +    +  G   LLPL +  +GPA  S+ D  DI+DE +  FRAN FF+NF+I
Sbjct: 4   YHSTFPVDPNTDRMVGNFALLPLNTKFRGPAYPSNSDY-DIIDECLDLFRANSFFKNFEI 62

Query: 62  KSSADKLLIYLTFYINVALKRLEGRRTLAEGTKAIINLGLEKVPVPGEPNFPFPGLFALP 121
           KS AD++LIY   +IN  L  L+   +  E  K + N+ L+   +PG P FP   ++ +P
Sbjct: 63  KSPADRVLIYGILFINDCLAHLKITTSFNEAVKVLTNVALDNFTLPGTPGFPLNNVYQVP 122

Query: 122 -QSQKEAELFRNYLKQIREETSGRLLSVAYRPNGT---PNKWWLAFAKRKFMN 170
            Q     +L + Y++Q R+E + RLL   Y    +   P+K+WLAF +R+FMN
Sbjct: 123 VQDHNSMDLLKTYIQQFRQELAMRLLERVYSSTDSKEYPSKFWLAFTRRRFMN 175

Functions as component of the Arp2/3 complex which is involved in regulation of actin polymerization and together with an activating nucleation-promoting factor (NPF) mediates the formation of branched actin networks.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|O15604|ARPC3_ENTHI Probable actin-related protein 2/3 complex subunit 3 (Fragment) OS=Entamoeba histolytica PE=2 SV=1

 Score = 77.4 bits (189), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 47/117 (40%), Positives = 66/117 (56%), Gaps = 4/117 (3%)

Query: 3   YHSSFVDEEGVTKACGCPLLPLKSHIK-GPAPASDQDRTDIVDEAITFFRANVFFRNFDI 61
           YHS  +D++ V KA   PL+  K+ +K  P      D  DIVDEAIT+++ANVF++N D+
Sbjct: 9   YHSE-LDKDIVQKAGNFPLMQFKTKVKVNPKFLLKGDDMDIVDEAITYYKANVFYKNLDM 67

Query: 62  K-SSADKLLIYLTFYINVALKRLEGRRTLAEGTKAIINLGLEKVPVPGEPNFPFPGL 117
               ADKLL YL FY+   L    G RT  +  K   +L +E   +PG+  F   G+
Sbjct: 68  SICEADKLLAYLMFYLQSLLLTFTG-RTKVDCDKMAFSLAIENFGLPGDGKFCLGGI 123

Functions as component of the Arp2/3 complex which is involved in regulation of actin polymerization and together with an activating nucleation-promoting factor (NPF) mediates the formation of branched actin networks.

Entamoeba histolytica (taxid: 5759)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	174
225446221	174	PREDICTED: actin-related protein 2/3 com	1.0	1.0	0.948	2e-91
296084530	193	unnamed protein product [Vitis vinifera]	1.0	0.901	0.948	2e-91
356562945	174	PREDICTED: actin-related protein 2/3 com	1.0	1.0	0.931	2e-90
356548530	174	PREDICTED: actin-related protein 2/3 com	1.0	1.0	0.925	1e-89
224142543	174	predicted protein [Populus trichocarpa]	0.988	0.988	0.936	1e-89
255645982	174	unknown [Glycine max]	1.0	1.0	0.913	1e-88
357478341	174	Actin-related protein 2/3 complex subuni	0.994	0.994	0.913	2e-88
18406746	174	actin-related protein C3 [Arabidopsis th	0.994	0.994	0.901	1e-87
224120326	174	predicted protein [Populus trichocarpa]	0.988	0.988	0.924	1e-87
21536845	174	Contains similarity to 21 KD subunit of	0.994	0.994	0.895	2e-87

>gi|225446221|ref|XP_002264212.1| PREDICTED: actin-related protein 2/3 complex subunit 3-like [Vitis vinifera]

 Score =  340 bits (871), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 165/174 (94%), Positives = 168/174 (96%)

Query: 1   MVYHSSFVDEEGVTKACGCPLLPLKSHIKGPAPASDQDRTDIVDEAITFFRANVFFRNFD 60
           MV+HSSFVD+EG+TKACGCPLLPLKSHIKGPAP SDQDRTDIVDEAITFFRANVFFRNFD
Sbjct: 1   MVHHSSFVDDEGITKACGCPLLPLKSHIKGPAPVSDQDRTDIVDEAITFFRANVFFRNFD 60

Query: 61  IKSSADKLLIYLTFYINVALKRLEGRRTLAEGTKAIINLGLEKVPVPGEPNFPFPGLFAL 120
           IKSSADKLLIYLTFYINVALKRLEG RTLAEGTKAIINLGLEKVPVPGE  FPFPGLFAL
Sbjct: 61  IKSSADKLLIYLTFYINVALKRLEGCRTLAEGTKAIINLGLEKVPVPGESGFPFPGLFAL 120

Query: 121 PQSQKEAELFRNYLKQIREETSGRLLSVAYRPNGTPNKWWLAFAKRKFMNIIVP 174
           P SQ EAELFRNYLKQIREETSGRLLSVAYRPNGTPNKWWLAFAKRKFMNIIVP
Sbjct: 121 PLSQPEAELFRNYLKQIREETSGRLLSVAYRPNGTPNKWWLAFAKRKFMNIIVP 174

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296084530|emb|CBI25551.3| unnamed protein product [Vitis vinifera]

 Score =  339 bits (870), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 165/174 (94%), Positives = 168/174 (96%)

Query: 1   MVYHSSFVDEEGVTKACGCPLLPLKSHIKGPAPASDQDRTDIVDEAITFFRANVFFRNFD 60
           MV+HSSFVD+EG+TKACGCPLLPLKSHIKGPAP SDQDRTDIVDEAITFFRANVFFRNFD
Sbjct: 20  MVHHSSFVDDEGITKACGCPLLPLKSHIKGPAPVSDQDRTDIVDEAITFFRANVFFRNFD 79

Query: 61  IKSSADKLLIYLTFYINVALKRLEGRRTLAEGTKAIINLGLEKVPVPGEPNFPFPGLFAL 120
           IKSSADKLLIYLTFYINVALKRLEG RTLAEGTKAIINLGLEKVPVPGE  FPFPGLFAL
Sbjct: 80  IKSSADKLLIYLTFYINVALKRLEGCRTLAEGTKAIINLGLEKVPVPGESGFPFPGLFAL 139

Query: 121 PQSQKEAELFRNYLKQIREETSGRLLSVAYRPNGTPNKWWLAFAKRKFMNIIVP 174
           P SQ EAELFRNYLKQIREETSGRLLSVAYRPNGTPNKWWLAFAKRKFMNIIVP
Sbjct: 140 PLSQPEAELFRNYLKQIREETSGRLLSVAYRPNGTPNKWWLAFAKRKFMNIIVP 193

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356562945|ref|XP_003549728.1| PREDICTED: actin-related protein 2/3 complex subunit 3-like [Glycine max]

 Score =  336 bits (861), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 162/174 (93%), Positives = 167/174 (95%)

Query: 1   MVYHSSFVDEEGVTKACGCPLLPLKSHIKGPAPASDQDRTDIVDEAITFFRANVFFRNFD 60
           MVYHSSFV+E+GV++ACGCPLLPLKSHIKGPAP SDQDRTDIVDEAITFFRANVFFRNFD
Sbjct: 1   MVYHSSFVNEDGVSRACGCPLLPLKSHIKGPAPVSDQDRTDIVDEAITFFRANVFFRNFD 60

Query: 61  IKSSADKLLIYLTFYINVALKRLEGRRTLAEGTKAIINLGLEKVPVPGEPNFPFPGLFAL 120
           IKS ADKLLIYLTFYINVALKRLEG RTLAEGTKAIINLGLEKVPVPGE  FPFPGLF L
Sbjct: 61  IKSPADKLLIYLTFYINVALKRLEGCRTLAEGTKAIINLGLEKVPVPGESGFPFPGLFPL 120

Query: 121 PQSQKEAELFRNYLKQIREETSGRLLSVAYRPNGTPNKWWLAFAKRKFMNIIVP 174
           PQS KEAELFRNYLKQIREETSGRLLSVAYRPNGTPNKWWLAFAKRKFMNII+P
Sbjct: 121 PQSHKEAELFRNYLKQIREETSGRLLSVAYRPNGTPNKWWLAFAKRKFMNIIIP 174

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356548530|ref|XP_003542654.1| PREDICTED: actin-related protein 2/3 complex subunit 3-like isoform 1 [Glycine max] gi|356548532|ref|XP_003542655.1| PREDICTED: actin-related protein 2/3 complex subunit 3-like isoform 2 [Glycine max]

 Score =  333 bits (855), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 161/174 (92%), Positives = 166/174 (95%)

Query: 1   MVYHSSFVDEEGVTKACGCPLLPLKSHIKGPAPASDQDRTDIVDEAITFFRANVFFRNFD 60
           MVYHSSFV+E+GV++ACGC LLPLKSHIKGPAP SDQDRTDIVDEAITFFRANVFFRNFD
Sbjct: 1   MVYHSSFVNEDGVSRACGCSLLPLKSHIKGPAPVSDQDRTDIVDEAITFFRANVFFRNFD 60

Query: 61  IKSSADKLLIYLTFYINVALKRLEGRRTLAEGTKAIINLGLEKVPVPGEPNFPFPGLFAL 120
           IKS ADKLLIYLTFYINVALKRLEG RTLAEGTKAIINLGLEKVPVPGE  FPFPGLF L
Sbjct: 61  IKSPADKLLIYLTFYINVALKRLEGCRTLAEGTKAIINLGLEKVPVPGESGFPFPGLFPL 120

Query: 121 PQSQKEAELFRNYLKQIREETSGRLLSVAYRPNGTPNKWWLAFAKRKFMNIIVP 174
           PQS KEAELFRNYLKQIREETSGRLLSVAYRPNGTPNKWWLAFAKRKFMNII+P
Sbjct: 121 PQSHKEAELFRNYLKQIREETSGRLLSVAYRPNGTPNKWWLAFAKRKFMNIIIP 174

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224142543|ref|XP_002324615.1| predicted protein [Populus trichocarpa] gi|222866049|gb|EEF03180.1| predicted protein [Populus trichocarpa]

 Score =  333 bits (855), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 161/172 (93%), Positives = 165/172 (95%)

Query: 1   MVYHSSFVDEEGVTKACGCPLLPLKSHIKGPAPASDQDRTDIVDEAITFFRANVFFRNFD 60
           MV+HSSFVDEEGV KACGCPLLPLKSHIKGPAP SDQDRTDIVDEAITFFRANVFFRNFD
Sbjct: 1   MVHHSSFVDEEGVRKACGCPLLPLKSHIKGPAPVSDQDRTDIVDEAITFFRANVFFRNFD 60

Query: 61  IKSSADKLLIYLTFYINVALKRLEGRRTLAEGTKAIINLGLEKVPVPGEPNFPFPGLFAL 120
           I+S ADKLLIYLTFYINVALKRLEG RTLAEGTKAIINLGLEKVPVPGE  FPFPGLFA 
Sbjct: 61  IQSPADKLLIYLTFYINVALKRLEGCRTLAEGTKAIINLGLEKVPVPGESGFPFPGLFAD 120

Query: 121 PQSQKEAELFRNYLKQIREETSGRLLSVAYRPNGTPNKWWLAFAKRKFMNII 172
           PQSQKEAELFRNYLKQIREETSGRLLSVAYRPNGTPNKWWLAFAKRKFMN++
Sbjct: 121 PQSQKEAELFRNYLKQIREETSGRLLSVAYRPNGTPNKWWLAFAKRKFMNVV 172

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255645982|gb|ACU23479.1| unknown [Glycine max]

 Score =  330 bits (847), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 159/174 (91%), Positives = 164/174 (94%)

Query: 1   MVYHSSFVDEEGVTKACGCPLLPLKSHIKGPAPASDQDRTDIVDEAITFFRANVFFRNFD 60
           MVYHSSFV+E+GV++ACGC LLPLKSHIKGPAP SDQDRTDIVDEAITFFRANVFFRNFD
Sbjct: 1   MVYHSSFVNEDGVSRACGCSLLPLKSHIKGPAPVSDQDRTDIVDEAITFFRANVFFRNFD 60

Query: 61  IKSSADKLLIYLTFYINVALKRLEGRRTLAEGTKAIINLGLEKVPVPGEPNFPFPGLFAL 120
           IKS ADKL IYLTFYINVALKRLEG RTL EGTKAIINLGLEKVPVPGE  FPFPGLF L
Sbjct: 61  IKSPADKLFIYLTFYINVALKRLEGCRTLTEGTKAIINLGLEKVPVPGESGFPFPGLFPL 120

Query: 121 PQSQKEAELFRNYLKQIREETSGRLLSVAYRPNGTPNKWWLAFAKRKFMNIIVP 174
           PQS KEAELFRNYLKQIREETSGRLLSVAYRPNGTPNKWWLAFAKRKFMNII+P
Sbjct: 121 PQSHKEAELFRNYLKQIREETSGRLLSVAYRPNGTPNKWWLAFAKRKFMNIIIP 174

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357478341|ref|XP_003609456.1| Actin-related protein 2/3 complex subunit [Medicago truncatula] gi|355510511|gb|AES91653.1| Actin-related protein 2/3 complex subunit [Medicago truncatula]

 Score =  329 bits (844), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 158/173 (91%), Positives = 163/173 (94%)

Query: 1   MVYHSSFVDEEGVTKACGCPLLPLKSHIKGPAPASDQDRTDIVDEAITFFRANVFFRNFD 60
           MVYHSSFVD+EG+ +ACGCPLLPLKSHIKGPAP SDQDRTDIVDEAITFFRANVFFRNFD
Sbjct: 1   MVYHSSFVDDEGINRACGCPLLPLKSHIKGPAPVSDQDRTDIVDEAITFFRANVFFRNFD 60

Query: 61  IKSSADKLLIYLTFYINVALKRLEGRRTLAEGTKAIINLGLEKVPVPGEPNFPFPGLFAL 120
           IKS ADKLLIYLTFYINVALK+LEG RTLAEGTKAIINLGLE VPVPGE  FPFPGLF L
Sbjct: 61  IKSPADKLLIYLTFYINVALKKLEGCRTLAEGTKAIINLGLENVPVPGESGFPFPGLFPL 120

Query: 121 PQSQKEAELFRNYLKQIREETSGRLLSVAYRPNGTPNKWWLAFAKRKFMNIIV 173
           PQS KEAELFRNYLKQIREETSGRLLSVAYRPNGTPNKWWLAFAKRKFMN+I 
Sbjct: 121 PQSHKEAELFRNYLKQIREETSGRLLSVAYRPNGTPNKWWLAFAKRKFMNVIT 173

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18406746|ref|NP_564757.1| actin-related protein C3 [Arabidopsis thaliana] gi|145325477|ref|NP_001077743.1| actin-related protein C3 [Arabidopsis thaliana] gi|107738068|gb|ABF83627.1| At1g60430 [Arabidopsis thaliana] gi|332195564|gb|AEE33685.1| actin-related protein C3 [Arabidopsis thaliana] gi|332195565|gb|AEE33686.1| actin-related protein C3 [Arabidopsis thaliana]

 Score =  327 bits (838), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 156/173 (90%), Positives = 163/173 (94%)

Query: 1   MVYHSSFVDEEGVTKACGCPLLPLKSHIKGPAPASDQDRTDIVDEAITFFRANVFFRNFD 60
           MVYHSSFVDEEGVTKACGCPLLPLKSHIKGPAP S+QD+TDIVDEAITFFRANVFF NFD
Sbjct: 1   MVYHSSFVDEEGVTKACGCPLLPLKSHIKGPAPVSEQDKTDIVDEAITFFRANVFFTNFD 60

Query: 61  IKSSADKLLIYLTFYINVALKRLEGRRTLAEGTKAIINLGLEKVPVPGEPNFPFPGLFAL 120
           IKS ADKLLIYLTFYINVALKRLEG RTLA GTKAIINLGLE +PVPGE  FPFPGLF+L
Sbjct: 61  IKSPADKLLIYLTFYINVALKRLEGCRTLAVGTKAIINLGLEDIPVPGETGFPFPGLFSL 120

Query: 121 PQSQKEAELFRNYLKQIREETSGRLLSVAYRPNGTPNKWWLAFAKRKFMNIIV 173
           PQSQ EAELFRNYLKQ+REETSGRLLSVAYR NGTPNKWWLAFAKRKFMN++V
Sbjct: 121 PQSQDEAELFRNYLKQVREETSGRLLSVAYRANGTPNKWWLAFAKRKFMNVVV 173

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224120326|ref|XP_002331020.1| predicted protein [Populus trichocarpa] gi|222872950|gb|EEF10081.1| predicted protein [Populus trichocarpa]

 Score =  327 bits (837), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 159/172 (92%), Positives = 162/172 (94%)

Query: 1   MVYHSSFVDEEGVTKACGCPLLPLKSHIKGPAPASDQDRTDIVDEAITFFRANVFFRNFD 60
           MV+HSSFVDEEGV KACGCPLLPLKSHIKGPAP SDQDRTDIVDEAITFFRANVFFRNF+
Sbjct: 1   MVHHSSFVDEEGVKKACGCPLLPLKSHIKGPAPVSDQDRTDIVDEAITFFRANVFFRNFN 60

Query: 61  IKSSADKLLIYLTFYINVALKRLEGRRTLAEGTKAIINLGLEKVPVPGEPNFPFPGLFAL 120
           I+S ADKLLIYLTFYINVALKRLEG RTLAEGTKAIINLGLEKV VPGE  FPFPGLFA 
Sbjct: 61  IQSPADKLLIYLTFYINVALKRLEGCRTLAEGTKAIINLGLEKVSVPGESGFPFPGLFAD 120

Query: 121 PQSQKEAELFRNYLKQIREETSGRLLSVAYRPNGTPNKWWLAFAKRKFMNII 172
           PQSQKEAELFR YLKQ REETSGRLLSVAYRPNGTPNKWWLAFAKRKFMNII
Sbjct: 121 PQSQKEAELFRKYLKQTREETSGRLLSVAYRPNGTPNKWWLAFAKRKFMNII 172

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|21536845|gb|AAM61177.1| Contains similarity to 21 KD subunit of the Arp2/3 protein complex (ARC21) [Arabidopsis thaliana]

 Score =  326 bits (836), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 155/173 (89%), Positives = 163/173 (94%)

Query: 1   MVYHSSFVDEEGVTKACGCPLLPLKSHIKGPAPASDQDRTDIVDEAITFFRANVFFRNFD 60
           MVYHSSFVDEEG+TKACGCPLLPLKSHIKGPAP S+QD+TDIVDEAITFFRANVFF NFD
Sbjct: 1   MVYHSSFVDEEGITKACGCPLLPLKSHIKGPAPISEQDKTDIVDEAITFFRANVFFTNFD 60

Query: 61  IKSSADKLLIYLTFYINVALKRLEGRRTLAEGTKAIINLGLEKVPVPGEPNFPFPGLFAL 120
           IKS ADKLLIYLTFYINVALKRLEG RTLA GTKAIINLGLE +PVPGE  FPFPGLF+L
Sbjct: 61  IKSPADKLLIYLTFYINVALKRLEGCRTLAVGTKAIINLGLEDIPVPGETGFPFPGLFSL 120

Query: 121 PQSQKEAELFRNYLKQIREETSGRLLSVAYRPNGTPNKWWLAFAKRKFMNIIV 173
           PQSQ EAELFRNYLKQ+REETSGRLLSVAYR NGTPNKWWLAFAKRKFMN++V
Sbjct: 121 PQSQDEAELFRNYLKQVREETSGRLLSVAYRANGTPNKWWLAFAKRKFMNVVV 173

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	174
TAIR|locus:2195633	174	ARPC3 "AT1G60430" [Arabidopsis	0.994	0.994	0.901	3.6e-82
MGI|MGI:1928375	178	Arpc3 "actin related protein 2	0.948	0.926	0.488	4.2e-40
RGD|1311985	177	Arpc3 "actin related protein 2	0.948	0.932	0.488	4.2e-40
UNIPROTKB|Q3T035	178	ARPC3 "Actin-related protein 2	0.948	0.926	0.482	5.3e-40
UNIPROTKB|E2R985	203	E2R985 "Uncharacterized protei	0.948	0.812	0.482	5.3e-40
UNIPROTKB|O15145	178	ARPC3 "Actin-related protein 2	0.948	0.926	0.482	5.3e-40
UNIPROTKB|B5APU8	178	ARPC3 "Uncharacterized protein	0.948	0.926	0.482	5.3e-40
UNIPROTKB|E1C8Y3	178	ARPC3 "Uncharacterized protein	0.948	0.926	0.464	1.8e-39
UNIPROTKB|J9P309	178	LOC100856747 "Uncharacterized	0.948	0.926	0.476	2.9e-39
ZFIN|ZDB-GENE-040625-107	178	arpc3 "actin related protein 2	0.948	0.926	0.470	3.4e-38

TAIR|locus:2195633 ARPC3 "AT1G60430" [Arabidopsis thaliana (taxid:3702)]

 Score = 824 (295.1 bits), Expect = 3.6e-82, P = 3.6e-82
 Identities = 156/173 (90%), Positives = 163/173 (94%)

Query:     1 MVYHSSFVDEEGVTKACGCPLLPLKSHIKGPAPASDQDRTDIVDEAITFFRANVFFRNFD 60
             MVYHSSFVDEEGVTKACGCPLLPLKSHIKGPAP S+QD+TDIVDEAITFFRANVFF NFD
Sbjct:     1 MVYHSSFVDEEGVTKACGCPLLPLKSHIKGPAPVSEQDKTDIVDEAITFFRANVFFTNFD 60

Query:    61 IKSSADKLLIYLTFYINVALKRLEGRRTLAEGTKAIINLGLEKVPVPGEPNFPFPGLFAL 120
             IKS ADKLLIYLTFYINVALKRLEG RTLA GTKAIINLGLE +PVPGE  FPFPGLF+L
Sbjct:    61 IKSPADKLLIYLTFYINVALKRLEGCRTLAVGTKAIINLGLEDIPVPGETGFPFPGLFSL 120

Query:   121 PQSQKEAELFRNYLKQIREETSGRLLSVAYRPNGTPNKWWLAFAKRKFMNIIV 173
             PQSQ EAELFRNYLKQ+REETSGRLLSVAYR NGTPNKWWLAFAKRKFMN++V
Sbjct:   121 PQSQDEAELFRNYLKQVREETSGRLLSVAYRANGTPNKWWLAFAKRKFMNVVV 173

GO:0005198 "structural molecule activity" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0005856 "cytoskeleton" evidence=IEA

GO:0030833 "regulation of actin filament polymerization" evidence=IEA

GO:0007015 "actin filament organization" evidence=TAS

GO:0005885 "Arp2/3 protein complex" evidence=TAS

GO:0005515 "protein binding" evidence=IPI

GO:0009407 "toxin catabolic process" evidence=RCA

MGI|MGI:1928375 Arpc3 "actin related protein 2/3 complex, subunit 3" [Mus musculus (taxid:10090)]

 Score = 427 (155.4 bits), Expect = 4.2e-40, P = 4.2e-40
 Identities = 83/170 (48%), Positives = 115/170 (67%)

Query:     3 YHSSFVDEEGVTKACG-CPLLPLKSHIKGPAPASDQDRTDIVDEAITFFRANVFFRNFDI 61
             YHSS +D +  TK  G   LLPL+S  KGPAP   +D TDIVDEAI +F+ANVFF+N++I
Sbjct:     4 YHSSLMDPD--TKLIGNMALLPLRSQFKGPAPRETKD-TDIVDEAIYYFKANVFFKNYEI 60

Query:    62 KSSADKLLIYLTFYINVALKRLEGRRTLAEGTKAIINLGLEKVPVPGEPNFPFPGLFALP 121
             K+ AD+ LIY+T YI+  LK+L+   + ++G K +  LG+   P+PGEP FP   ++A P
Sbjct:    61 KNEADRTLIYITLYISECLKKLQKCNSKSQGEKEMYTLGITNFPIPGEPGFPLNAIYAKP 120

Query:   122 QSQKEAELFRNYLKQIREETSGRLLSVAYRPNGT-PNKWWLAFAKRKFMN 170
              S++E E+ R YL+Q+R+ET  RL    + P    P+KWW  F KR+FMN
Sbjct:   121 ASKQEDEMMRAYLQQLRQETGLRLCEKVFDPQSDKPSKWWTCFVKRQFMN 170

GO:0003779 "actin binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005856 "cytoskeleton" evidence=IEA

GO:0005885 "Arp2/3 protein complex" evidence=TAS

GO:0030027 "lamellipodium" evidence=IDA

GO:0030833 "regulation of actin filament polymerization" evidence=IEA

GO:0034314 "Arp2/3 complex-mediated actin nucleation" evidence=IEA

GO:0042995 "cell projection" evidence=IEA

RGD|1311985 Arpc3 "actin related protein 2/3 complex, subunit 3" [Rattus norvegicus (taxid:10116)]

 Score = 427 (155.4 bits), Expect = 4.2e-40, P = 4.2e-40
 Identities = 83/170 (48%), Positives = 115/170 (67%)

Query:     3 YHSSFVDEEGVTKACG-CPLLPLKSHIKGPAPASDQDRTDIVDEAITFFRANVFFRNFDI 61
             YHSS +D +  TK  G   LLP++S  KGPAP   +D TDIVDEAI +F+ANVFF+N++I
Sbjct:     3 YHSSLMDPD--TKLIGNMALLPIRSQFKGPAPRETKD-TDIVDEAIYYFKANVFFKNYEI 59

Query:    62 KSSADKLLIYLTFYINVALKRLEGRRTLAEGTKAIINLGLEKVPVPGEPNFPFPGLFALP 121
             K+ AD+ LIY+T YI+  LK+L+   + ++G K +  LG+   P+PGEP FP   ++A P
Sbjct:    60 KNEADRTLIYITLYISECLKKLQKCNSRSQGEKEMYTLGITNFPIPGEPGFPLNAIYAKP 119

Query:   122 QSQKEAELFRNYLKQIREETSGRLLSVAYRP-NGTPNKWWLAFAKRKFMN 170
              S++E E  R YL+Q+R+ET  RL    + P N  P+KWW  F KR+FMN
Sbjct:   120 ASKQEDETMRAYLQQLRQETGLRLCDKVFDPQNDKPSKWWTCFVKRQFMN 169

GO:0005885 "Arp2/3 protein complex" evidence=IEA

GO:0030027 "lamellipodium" evidence=ISO

GO:0034314 "Arp2/3 complex-mediated actin nucleation" evidence=IEA

UNIPROTKB|Q3T035 ARPC3 "Actin-related protein 2/3 complex subunit 3" [Bos taurus (taxid:9913)]

 Score = 426 (155.0 bits), Expect = 5.3e-40, P = 5.3e-40
 Identities = 82/170 (48%), Positives = 116/170 (68%)

Query:     3 YHSSFVDEEGVTKACG-CPLLPLKSHIKGPAPASDQDRTDIVDEAITFFRANVFFRNFDI 61
             YHSS +D +  TK  G   LLP++S  KGPAP   +D TDIVDEAI +F+ANVFF+N++I
Sbjct:     4 YHSSLMDPD--TKLIGNMALLPIRSQFKGPAPRETKD-TDIVDEAIYYFKANVFFKNYEI 60

Query:    62 KSSADKLLIYLTFYINVALKRLEGRRTLAEGTKAIINLGLEKVPVPGEPNFPFPGLFALP 121
             K+ AD+ LIY+T YI+  LK+L+   + ++G K +  LG+   P+PGEP FP   ++A P
Sbjct:    61 KNEADRTLIYITLYISECLKKLQKCNSKSQGEKEMYTLGITNFPIPGEPGFPLNAIYAKP 120

Query:   122 QSQKEAELFRNYLKQIREETSGRLLSVAYRP-NGTPNKWWLAFAKRKFMN 170
              +++E E+ R YL+Q+R+ET  RL    + P N  P+KWW  F KR+FMN
Sbjct:   121 ANKQEDEVMRAYLQQLRQETGLRLCEKVFDPQNDKPSKWWTCFVKRQFMN 170

GO:0042995 "cell projection" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0003779 "actin binding" evidence=IEA

GO:0034314 "Arp2/3 complex-mediated actin nucleation" evidence=IEA

GO:0005885 "Arp2/3 protein complex" evidence=IEA

UNIPROTKB|E2R985 E2R985 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 426 (155.0 bits), Expect = 5.3e-40, P = 5.3e-40
 Identities = 82/170 (48%), Positives = 116/170 (68%)

Query:     3 YHSSFVDEEGVTKACG-CPLLPLKSHIKGPAPASDQDRTDIVDEAITFFRANVFFRNFDI 61
             YHSS +D +  TK  G   LLP++S  KGPAP   +D TDIVDEAI +F+ANVFF+N++I
Sbjct:    29 YHSSLMDPD--TKLIGNMALLPIRSQFKGPAPRETKD-TDIVDEAIYYFKANVFFKNYEI 85

Query:    62 KSSADKLLIYLTFYINVALKRLEGRRTLAEGTKAIINLGLEKVPVPGEPNFPFPGLFALP 121
             K+ AD+ LIY+T YI+  LK+L+   + ++G K +  LG+   P+PGEP FP   ++A P
Sbjct:    86 KNEADRTLIYITLYISECLKKLQKCNSKSQGEKEMYTLGITNFPIPGEPGFPLNAIYAKP 145

Query:   122 QSQKEAELFRNYLKQIREETSGRLLSVAYRP-NGTPNKWWLAFAKRKFMN 170
              +++E E+ R YL+Q+R+ET  RL    + P N  P+KWW  F KR+FMN
Sbjct:   146 ANKQEDEVMRAYLQQLRQETGLRLCEKVFDPQNDKPSKWWTCFVKRQFMN 195

GO:0034314 "Arp2/3 complex-mediated actin nucleation" evidence=IEA

GO:0005885 "Arp2/3 protein complex" evidence=IEA

UNIPROTKB|O15145 ARPC3 "Actin-related protein 2/3 complex subunit 3" [Homo sapiens (taxid:9606)]

 Score = 426 (155.0 bits), Expect = 5.3e-40, P = 5.3e-40
 Identities = 82/170 (48%), Positives = 116/170 (68%)

Query:     3 YHSSFVDEEGVTKACG-CPLLPLKSHIKGPAPASDQDRTDIVDEAITFFRANVFFRNFDI 61
             YHSS +D +  TK  G   LLP++S  KGPAP   +D TDIVDEAI +F+ANVFF+N++I
Sbjct:     4 YHSSLMDPD--TKLIGNMALLPIRSQFKGPAPRETKD-TDIVDEAIYYFKANVFFKNYEI 60

Query:    62 KSSADKLLIYLTFYINVALKRLEGRRTLAEGTKAIINLGLEKVPVPGEPNFPFPGLFALP 121
             K+ AD+ LIY+T YI+  LK+L+   + ++G K +  LG+   P+PGEP FP   ++A P
Sbjct:    61 KNEADRTLIYITLYISECLKKLQKCNSKSQGEKEMYTLGITNFPIPGEPGFPLNAIYAKP 120

Query:   122 QSQKEAELFRNYLKQIREETSGRLLSVAYRP-NGTPNKWWLAFAKRKFMN 170
              +++E E+ R YL+Q+R+ET  RL    + P N  P+KWW  F KR+FMN
Sbjct:   121 ANKQEDEVMRAYLQQLRQETGLRLCEKVFDPQNDKPSKWWTCFVKRQFMN 170

GO:0005885 "Arp2/3 protein complex" evidence=IEA

GO:0034314 "Arp2/3 complex-mediated actin nucleation" evidence=IEA

GO:0003779 "actin binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0030027 "lamellipodium" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0015629 "actin cytoskeleton" evidence=TAS

GO:0005200 "structural constituent of cytoskeleton" evidence=TAS

GO:0006928 "cellular component movement" evidence=TAS

UNIPROTKB|B5APU8 ARPC3 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 426 (155.0 bits), Expect = 5.3e-40, P = 5.3e-40
 Identities = 82/170 (48%), Positives = 116/170 (68%)

Query:     3 YHSSFVDEEGVTKACG-CPLLPLKSHIKGPAPASDQDRTDIVDEAITFFRANVFFRNFDI 61
             YHSS +D +  TK  G   LLP++S  KGPAP   +D TDIVDEAI +F+ANVFF+N++I
Sbjct:     4 YHSSLMDPD--TKLIGNMALLPIRSQFKGPAPRETKD-TDIVDEAIYYFKANVFFKNYEI 60

Query:    62 KSSADKLLIYLTFYINVALKRLEGRRTLAEGTKAIINLGLEKVPVPGEPNFPFPGLFALP 121
             K+ AD+ LIY+T YI+  LK+L+   + ++G K +  LG+   P+PGEP FP   ++A P
Sbjct:    61 KNEADRTLIYITLYISECLKKLQKCNSKSQGEKEMYTLGITNFPIPGEPGFPLNAIYAKP 120

Query:   122 QSQKEAELFRNYLKQIREETSGRLLSVAYRP-NGTPNKWWLAFAKRKFMN 170
              +++E E+ R YL+Q+R+ET  RL    + P N  P+KWW  F KR+FMN
Sbjct:   121 ANKQEDEVMRAYLQQLRQETGLRLCEKVFDPQNDKPSKWWTCFVKRQFMN 170

GO:0030027 "lamellipodium" evidence=IEA

GO:0034314 "Arp2/3 complex-mediated actin nucleation" evidence=IEA

GO:0005885 "Arp2/3 protein complex" evidence=IEA

UNIPROTKB|E1C8Y3 ARPC3 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 421 (153.3 bits), Expect = 1.8e-39, P = 1.8e-39
 Identities = 79/170 (46%), Positives = 115/170 (67%)

Query:     3 YHSSFVDEEGVTKACG-CPLLPLKSHIKGPAPASDQDRTDIVDEAITFFRANVFFRNFDI 61
             YHS+ +D +  TK  G   LLP++S  KGPAP   +D TDI+DEAI +F+ANVFF+N++I
Sbjct:     4 YHSTLMDSD--TKLVGNMALLPIRSQFKGPAPRETKD-TDIIDEAIYYFKANVFFKNYEI 60

Query:    62 KSSADKLLIYLTFYINVALKRLEGRRTLAEGTKAIINLGLEKVPVPGEPNFPFPGLFALP 121
             K+ AD+ LIY+T YI+  LK+L+   +  +G K +  LG+   P+PGEP FP   ++A P
Sbjct:    61 KNEADRTLIYITLYISECLKKLQKCNSKGQGEKEMYTLGITNFPIPGEPGFPLNAIYAKP 120

Query:   122 QSQKEAELFRNYLKQIREETSGRLLSVAYRPNGT-PNKWWLAFAKRKFMN 170
              +++E E+ R YL+Q+R+ET  RL    + P    P+KWW+ F KR+FMN
Sbjct:   121 TNKQEEEVMRAYLQQLRQETGLRLCEKVFDPQSDKPSKWWICFVKRQFMN 170

GO:0005885 "Arp2/3 protein complex" evidence=IEA

GO:0034314 "Arp2/3 complex-mediated actin nucleation" evidence=IEA

GO:0030027 "lamellipodium" evidence=IEA

UNIPROTKB|J9P309 LOC100856747 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 419 (152.6 bits), Expect = 2.9e-39, P = 2.9e-39
 Identities = 81/170 (47%), Positives = 115/170 (67%)

Query:     3 YHSSFVDEEGVTKACG-CPLLPLKSHIKGPAPASDQDRTDIVDEAITFFRANVFFRNFDI 61
             YHSS +D +  TK  G   LLP++S  KGPAP   +D TDIVDEAI +F+ANVFF+N++I
Sbjct:     4 YHSSLMDPD--TKLIGNMALLPIRSQFKGPAPRETKD-TDIVDEAIYYFKANVFFKNYEI 60

Query:    62 KSSADKLLIYLTFYINVALKRLEGRRTLAEGTKAIINLGLEKVPVPGEPNFPFPGLFALP 121
             K+ AD+ LIY+T YI+  LK+L+   + ++G K +   G+   P+PGEP FP   ++A P
Sbjct:    61 KNEADRTLIYITLYISECLKKLQKCNSKSQGEKEMYTPGITNFPIPGEPGFPLNAIYAKP 120

Query:   122 QSQKEAELFRNYLKQIREETSGRLLSVAYRP-NGTPNKWWLAFAKRKFMN 170
              +++E E+ R YL+Q+R+ET  RL    + P N  P+KWW  F KR+FMN
Sbjct:   121 ANKQEDEVMRAYLQQLRQETGLRLCEKVFDPQNDKPSKWWTCFVKRQFMN 170

GO:0034314 "Arp2/3 complex-mediated actin nucleation" evidence=IEA

GO:0005885 "Arp2/3 protein complex" evidence=IEA

ZFIN|ZDB-GENE-040625-107 arpc3 "actin related protein 2/3 complex, subunit 3" [Danio rerio (taxid:7955)]

 Score = 409 (149.0 bits), Expect = 3.4e-38, P = 3.4e-38
 Identities = 80/170 (47%), Positives = 113/170 (66%)

Query:     3 YHSSFVDEEGVTKACG-CPLLPLKSHIKGPAPASDQDRTDIVDEAITFFRANVFFRNFDI 61
             YHS+ +D +  TK  G   LLPLK+  KGPA    +D TDI+DEAI +F+ANVFF+N++I
Sbjct:     4 YHSALMDAD--TKLVGNMALLPLKTQFKGPAARETKD-TDIIDEAIYYFKANVFFKNYEI 60

Query:    62 KSSADKLLIYLTFYINVALKRLEGRRTLAEGTKAIINLGLEKVPVPGEPNFPFPGLFALP 121
             K+ AD+ LIY+T YI+  LK+L+   +  +G K +  LG+   P+PGEP FP   ++A P
Sbjct:    61 KNEADRTLIYITLYISECLKKLQKCSSRGQGEKEMYTLGITNFPIPGEPGFPLNAMYAKP 120

Query:   122 QSQKEAELFRNYLKQIREETSGRLLSVAYRPN-GTPNKWWLAFAKRKFMN 170
              S++E E  R YL+QIR+ET  RL    + P    P+KWW+ F K++FMN
Sbjct:   121 SSKQEEENMRAYLQQIRQETGLRLCDRVFDPQTDKPSKWWVCFVKKQFMN 170

GO:0005856 "cytoskeleton" evidence=IEA

GO:0030833 "regulation of actin filament polymerization" evidence=IEA

GO:0005885 "Arp2/3 protein complex" evidence=IEA

GO:0034314 "Arp2/3 complex-mediated actin nucleation" evidence=IEA

GO:0003674 "molecular_function" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9Y7J4	ARPC3_SCHPO	No assigned EC number	0.4352	0.9655	0.9655	yes	no
Q05933	ARPC3_YEAST	No assigned EC number	0.3930	0.9597	0.9382	yes	no
O96624	ARPC3_DICDI	No assigned EC number	0.4186	0.9712	0.9712	yes	no
O15145	ARPC3_HUMAN	No assigned EC number	0.4795	0.9540	0.9325	yes	no
Q3T035	ARPC3_BOVIN	No assigned EC number	0.4795	0.9540	0.9325	yes	no
Q9JM76	ARPC3_MOUSE	No assigned EC number	0.4853	0.9540	0.9325	yes	no
Q9XWV3	ARPC3_CAEEL	No assigned EC number	0.4104	0.9597	0.9125	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	174
pfam04062	175	pfam04062, P21-Arc, ARP2/3 complex ARPC3 (21 kDa)	2e-88

>gnl|CDD|217867 pfam04062, P21-Arc, ARP2/3 complex ARPC3 (21 kDa) subunit

 Score =  256 bits (655), Expect = 2e-88
 Identities = 83/171 (48%), Positives = 112/171 (65%), Gaps = 3/171 (1%)

Query: 2   VYHSSFVDEEGVTKACG-CPLLPLKSHIKGPAPASDQDRTDIVDEAITFFRANVFFRNFD 60
            YHS+F+DE    +  G   LLPL++  +GPAP  D +  DI+DEA+  FRANVFFRNF+
Sbjct: 3   AYHSTFLDEPS-VRLVGNMALLPLRTKFRGPAPTPDSEDYDIIDEALDLFRANVFFRNFE 61

Query: 61  IKSSADKLLIYLTFYINVALKRLEGRRTLAEGTKAIINLGLEKVPVPGEPNFPFPGLFAL 120
           IK  AD++LIY   YI+  LK+L+   +  E  K + NL L+   +PG+P FP   L+A 
Sbjct: 62  IKGPADRVLIYGILYISECLKKLQKCMSKREAEKELNNLALDNFAIPGDPGFPLNSLYAP 121

Query: 121 PQSQKEAELFRNYLKQIREETSGRLLSVAYRPN-GTPNKWWLAFAKRKFMN 170
           P +++EAEL R YL+Q+R+E + RLL   Y    G P+KWWL F KRKFMN
Sbjct: 122 PANRQEAELLRQYLQQLRQELAIRLLERVYADEDGKPSKWWLCFTKRKFMN 172

The seven component ARP2/3 actin-organising complex is involved in actin assembly and function. Length = 175

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	174
PF04062	175	P21-Arc: ARP2/3 complex ARPC3 (21 kDa) subunit; In	100.0
KOG3155	173	consensus Actin-related protein Arp2/3 complex, su	100.0

>PF04062 P21-Arc: ARP2/3 complex ARPC3 (21 kDa) subunit; InterPro: IPR007204 The Arp2/3 complex is a seven-protein assembly that is critical for actin nucleation and branching in cells

Probab=100.00  E-value=1.4e-100  Score=627.12  Aligned_cols=172  Identities=50%  Similarity=0.920  Sum_probs=126.4

Q ss_pred             cccccCCCCCCcceeeCccccccccCCCCCCCCCCCCCcchHHHHHHhhhhhccccccccCCCCceehHhHHHHHHHHHH
Q 030601            2 VYHSSFVDEEGVTKACGCPLLPLKSHIKGPAPASDQDRTDIVDEAITFFRANVFFRNFDIKSSADKLLIYLTFYINVALK   81 (174)
Q Consensus         2 AYHS~f~~~~~~~~~~g~alLPlrt~~rGPAp~~~~~~~DIIDEal~~FrAN~fFrnfEIKg~aDR~LIYltLyi~~CLk   81 (174)
                      ||||+|+++++++.+||||||||||++|||||+++++++|||||||+|||||||||||||||+||||||||||||+||||
T Consensus         3 AYHS~f~~~~~~~~iGn~~lLPlrt~~rGPAp~~~~~~~DIIDEaL~~FraNvfFrnfeIKg~aDR~LIYltLyi~eCLk   82 (175)
T PF04062_consen    3 AYHSSFNDDESVRLIGNMALLPLRTKFRGPAPRPDDSDYDIIDEALYLFRANVFFRNFEIKGPADRLLIYLTLYISECLK   82 (175)
T ss_dssp             --------TT--EEETTEEE--B--SS-SS--B--SSS--HHHHHHHHHHHHTT-S-----SHHCHHHHHHHHHHHCHHH
T ss_pred             CccccccCCCCceeEcCeeeeecccCCCCCCCCCCCCcccHHHHHHHHHHhhhhhhccccCCCCceEeeeHHHHHHHHHH
Confidence            89999999887778888999999999999999877789999999999999999999999999999999999999999999


Q ss_pred             HhhcCCCHHHHHHHHHHhcccCCCCCCCCCCCCCccccCCCChhHHHHHHHHHHHHHHHHHHHHHhhhcCCC-CCCchhh
Q 030601           82 RLEGRRTLAEGTKAIINLGLEKVPVPGEPNFPFPGLFALPQSQKEAELFRNYLKQIREETSGRLLSVAYRPN-GTPNKWW  160 (174)
Q Consensus        82 kl~~~~~~~ea~k~l~~la~~~F~iPGd~gFpLn~~y~~P~~~~e~d~lR~Yl~Q~RqEl~~RL~ervy~~~-~~psKwW  160 (174)
                      ||++|++++||+|+|+++|+++|+||||+|||||++|++|+|++|+|+||+||+|+|||+|.|||||||+++ ++|||||
T Consensus        83 kl~~~~sk~ea~k~l~~lal~~F~iPGd~gFpLn~~y~~P~~~~e~d~lR~Yl~QlRqElg~RL~ervf~~~~~~psKwW  162 (175)
T PF04062_consen   83 KLQKCTSKNEAQKELYNLALDNFPIPGDPGFPLNSLYAKPANRQEADLLRQYLTQLRQELGLRLLERVFDDGDGKPSKWW  162 (175)
T ss_dssp             HHTT-SSHHHHHHHHHHHHHS----TTSTT-TTTTTS---SSHHHHHHHHHHHHHHHHHHCCCCCHHHB-SSSS-B-HCC
T ss_pred             HhccCCCHHHHHHHHHHHHHhcCCCCCCCCCCccccccCCCChhHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCChhh
Confidence            999999999999999999999999999999999999999999999999999999999999999999999987 8999999


Q ss_pred             hhhcccccccccC
Q 030601          161 LAFAKRKFMNIIV  173 (174)
Q Consensus       161 m~FaKRkFM~ksL  173 (174)
                      |||+|||||||||
T Consensus       163 ~~FaKRkFM~KsL  175 (175)
T PF04062_consen  163 MCFAKRKFMNKSL  175 (175)
T ss_dssp             CCCCC--GGG--T
T ss_pred             hhhhhhccccccC
Confidence            9999999999998

Arp2/3 nucleates new actin filaments while bound to existing filaments, thus creating a branched network []. The complex consists of Arp2, Arp3, p41, p34, p21, p20 and p16. Subunits p34 and p20 constitute the core of the structure, with the remaining subunits located peripherally []. This entry describes the p21 subunit. Proteins such as WASp and Scar1 may mediate receptor signalling through interactions with p21-Arc, resulting in the activation of Arc2/3 complex activity [].; GO: 0030833 regulation of actin filament polymerization, 0005856 cytoskeleton; PDB: 3DWL_J 2P9P_E 2P9N_E 2P9K_E 1TYQ_E 1U2V_E 3RSE_E 2P9U_E 3DXM_E 2P9S_E ....

>KOG3155 consensus Actin-related protein Arp2/3 complex, subunit ARPC3 [Cytoskeleton]

Probab=100.00  E-value=7.6e-94  Score=582.27  Aligned_cols=171  Identities=51%  Similarity=0.922  Sum_probs=165.2

Q ss_pred             CcccccCCCCCCcceeeCccccccccCCCCCCCCCCCCCcchHHHHHHhhhhhccccccccCCCCceehHhHHHHHHHHH
Q 030601            1 MVYHSSFVDEEGVTKACGCPLLPLKSHIKGPAPASDQDRTDIVDEAITFFRANVFFRNFDIKSSADKLLIYLTFYINVAL   80 (174)
Q Consensus         1 mAYHS~f~~~~~~~~~~g~alLPlrt~~rGPAp~~~~~~~DIIDEal~~FrAN~fFrnfEIKg~aDR~LIYltLyi~~CL   80 (174)
                      +||||+|.+++++ ..+|||+|||||++|||||+.+ +++|||||||+|||||||||||||||||||+|||+||||||||
T Consensus         2 pAyhSsf~d~~~~-~~~n~alLpl~s~fkGPAp~~~-~d~DIvDEai~yFkaNvFFknfEIK~~ADRtLIYitlyIseCL   79 (173)
T KOG3155|consen    2 PAYHSSFMDPDNK-LIGNMALLPIRSQFKGPAPRET-KDTDIVDEAIYYFKANVFFKNFEIKNPADRTLIYITLYISECL   79 (173)
T ss_pred             CcccccccCcCCC-ccCcceeccchhhccCCCCCcc-CccchHHHHHHHhhcccceecceecCccceeEEEeehHHHHHH
Confidence            6999999988765 4568999999999999999976 6899999999999999999999999999999999999999999


Q ss_pred             HHhhcCCCHHHHHHHHHHhcccCCCCCCCCCCCCCccccCCCChhHHHHHHHHHHHHHHHHHHHHHhhhcCCC-CCCchh
Q 030601           81 KRLEGRRTLAEGTKAIINLGLEKVPVPGEPNFPFPGLFALPQSQKEAELFRNYLKQIREETSGRLLSVAYRPN-GTPNKW  159 (174)
Q Consensus        81 kkl~~~~~~~ea~k~l~~la~~~F~iPGd~gFpLn~~y~~P~~~~e~d~lR~Yl~Q~RqEl~~RL~ervy~~~-~~psKw  159 (174)
                      ||||+|+|+.||+|+|++||+++|+||||+|||||+||++|.+++|+|.||+|++|+|||+|.|||++||++. ++||||
T Consensus        80 kkLqkc~sk~qg~k~l~~lal~~~~iPGe~GFPln~ly~~p~s~~~~e~mr~Yl~Q~RqE~~~RL~~~v~~~~~d~PsKw  159 (173)
T KOG3155|consen   80 KKLQKCNSKSQGEKELYNLALENFPIPGEPGFPLNALYTLPASKQDAELMRAYLQQFRQETGLRLLEKVYDTPKDKPSKW  159 (173)
T ss_pred             HHHHcccchhHHHHHHHHhhhhcccCCCCCCCCchhhhcCCCCCCchHHHHHHHHHHHHHhhhhHHHHhcCCCCCCcchh
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999887 899999


Q ss_pred             hhhhcccccccccC
Q 030601          160 WLAFAKRKFMNIIV  173 (174)
Q Consensus       160 Wm~FaKRkFM~ksL  173 (174)
                      |+||+|||||||||
T Consensus       160 W~cF~kRrFMnksl  173 (173)
T KOG3155|consen  160 WLCFAKRRFMNKSL  173 (173)
T ss_pred             HHHHHHHHhhhccC
Confidence            99999999999997

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	174
1k8k_E	178	Crystal Structure Of Arp23 COMPLEX Length = 178		4e-42
3dwl_E	174	Crystal Structure Of Fission Yeast Arp2/3 Complex L		1e-35

>pdb|1K8K|E Chain E, Crystal Structure Of Arp23 COMPLEX Length = 178

Iteration: 1
 Score =  167 bits (422), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 82/171 (47%), Positives = 116/171 (67%), Gaps = 5/171 (2%)
Query: 2   VYHSSFVDEEGVTKACG-CPLLPLKSHIKGPAPASDQDRTDIVDEAITFFRANVFFRNFD 60
            YHSS +D +  TK  G   LLP++S  KGPAP   +D TDIVDEAI +F+ANVFF+N++
Sbjct: 3   AYHSSLMDPD--TKLIGNMALLPIRSQFKGPAPRETKD-TDIVDEAIYYFKANVFFKNYE 59
Query: 61  IKSSADKLLIYLTFYINVALKRLEGRRTLAEGTKAIINLGLEKVPVPGEPNFPFPGLFAL 120
           IK+ AD+ LIY+T YI+  LK+L+   + ++G K +  LG+   P+PGEP FP   ++A 
Sbjct: 60  IKNEADRTLIYITLYISECLKKLQKCNSKSQGEKEMYTLGITNFPIPGEPGFPLNAIYAK 119
Query: 121 PQSQKEAELFRNYLKQIREETSGRLLSVAYRP-NGTPNKWWLAFAKRKFMN 170
           P +++E E+ R YL+Q+R+ET  RL    + P N  P+KWW  F KR+FMN
Sbjct: 120 PANKQEDEVMRAYLQQLRQETGLRLCEKVFDPQNDKPSKWWTCFVKRQFMN 170

>pdb|3DWL|E Chain E, Crystal Structure Of Fission Yeast Arp2/3 Complex Lacking The Arp2 Subunit Length = 174

Iteration: 1
 Score =  145 bits (366), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 74/170 (43%), Positives = 101/170 (59%), Gaps = 2/170 (1%)
Query: 2   VYHSSFVDEEGVTKACGCPLLPLKSHIKGPAPASDQDRTDIVDEAITFFRANVFFRNFDI 61
            YHSSF+    V       +LPLK+  +GPA  +D+ + DI+DE I  FRAN FFRNF+I
Sbjct: 3   AYHSSFLSLTDVPTTGNIAMLPLKTKFRGPAYPADESQMDIIDECIGLFRANCFFRNFEI 62
Query: 62  KSSADKLLIYLTFYINVALKRLEGRRTLAEGTKAIINLGLEKVPVPGEPNFPFPGLFALP 121
           K  AD+ LIY T +I+  L R+ G     +  + + +L LE   +PG   FP   L+A P
Sbjct: 63  KGPADRTLIYGTLFISECLGRVNG-LNYRDAERQLNSLALENFSIPGSAGFPLNALYAPP 121
Query: 122 QSQKEAELFRNYLKQIREETSGRLLSVAY-RPNGTPNKWWLAFAKRKFMN 170
            S ++AE+ R YL Q R+E + RLLS  Y      P+KWW  F+KR+FMN
Sbjct: 122 LSPQDAEIMRTYLTQFRQELAYRLLSHVYATEKDHPSKWWTCFSKRRFMN 171

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	174
3dwl_E	174	Actin-related protein 2/3 complex subunit 3; prope	6e-80
1k8k_E	178	P21, ARP2/3 complex 21 kDa subunit, P21-ARC; beta-	9e-78

>3dwl_E Actin-related protein 2/3 complex subunit 3; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} Length = 174

 Score =  233 bits (597), Expect = 6e-80
 Identities = 73/169 (43%), Positives = 100/169 (59%), Gaps = 2/169 (1%)

Query: 3   YHSSFVDEEGVTKACGCPLLPLKSHIKGPAPASDQDRTDIVDEAITFFRANVFFRNFDIK 62
           YHSSF+    V       +LPLK+  +GPA  +D+ + DI+DE I  FRAN FFRNF+IK
Sbjct: 4   YHSSFLSLTDVPTTGNIAMLPLKTKFRGPAYPADESQMDIIDECIGLFRANCFFRNFEIK 63

Query: 63  SSADKLLIYLTFYINVALKRLEGRRTLAEGTKAIINLGLEKVPVPGEPNFPFPGLFALPQ 122
             AD+ LIY T +I+  L R+       +  + + +L LE   +PG   FP   L+A P 
Sbjct: 64  GPADRTLIYGTLFISECLGRVN-GLNYRDAERQLNSLALENFSIPGSAGFPLNALYAPPL 122

Query: 123 SQKEAELFRNYLKQIREETSGRLLSVAYRPN-GTPNKWWLAFAKRKFMN 170
           S ++AE+ R YL Q R+E + RLLS  Y      P+KWW  F+KR+FMN
Sbjct: 123 SPQDAEIMRTYLTQFRQELAYRLLSHVYATEKDHPSKWWTCFSKRRFMN 171

>1k8k_E P21, ARP2/3 complex 21 kDa subunit, P21-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: a.148.1.1 PDB: 1tyq_E* 1u2v_E* 2p9i_E* 2p9k_E* 2p9l_E 2p9n_E* 2p9p_E* 2p9s_E* 2p9u_E* 3dxk_E* 3dxm_E* 3rse_E Length = 178

 Score =  228 bits (583), Expect = 9e-78
 Identities = 79/169 (46%), Positives = 113/169 (66%), Gaps = 3/169 (1%)

Query: 3   YHSSFVDEEGVTKACGCPLLPLKSHIKGPAPASDQDRTDIVDEAITFFRANVFFRNFDIK 62
           YHSS +D +         LLP++S  KGPAP   +D TDIVDEAI +F+ANVFF+N++IK
Sbjct: 4   YHSSLMDPD-TKLIGNMALLPIRSQFKGPAPRETKD-TDIVDEAIYYFKANVFFKNYEIK 61

Query: 63  SSADKLLIYLTFYINVALKRLEGRRTLAEGTKAIINLGLEKVPVPGEPNFPFPGLFALPQ 122
           + AD+ LIY+T YI+  LK+L+   + ++G K +  LG+   P+PGEP FP   ++A P 
Sbjct: 62  NEADRTLIYITLYISECLKKLQKCNSKSQGEKEMYTLGITNFPIPGEPGFPLNAIYAKPA 121

Query: 123 SQKEAELFRNYLKQIREETSGRLLSVAYRP-NGTPNKWWLAFAKRKFMN 170
           +++E E+ R YL+Q+R+ET  RL    + P N  P+KWW  F KR+FMN
Sbjct: 122 NKQEDEVMRAYLQQLRQETGLRLCEKVFDPQNDKPSKWWTCFVKRQFMN 170

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	174
1k8k_E	178	P21, ARP2/3 complex 21 kDa subunit, P21-ARC; beta-	100.0
3dwl_E	174	Actin-related protein 2/3 complex subunit 3; prope	100.0

>1k8k_E P21, ARP2/3 complex 21 kDa subunit, P21-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: a.148.1.1 PDB: 1tyq_E* 1u2v_E* 2p9i_E* 2p9k_E* 2p9l_E 2p9n_E* 2p9p_E* 2p9s_E* 2p9u_E* 3dxk_E* 3dxm_E* 3rse_E

Probab=100.00  E-value=7.8e-100  Score=622.56  Aligned_cols=171  Identities=45%  Similarity=0.876  Sum_probs=164.7

Q ss_pred             CcccccCCCCCCcceeeCccccccccCCCCCCCCCCCCCcchHHHHHHhhhhhccccccccCCCCceehHhHHHHHHHHH
Q 030601            1 MVYHSSFVDEEGVTKACGCPLLPLKSHIKGPAPASDQDRTDIVDEAITFFRANVFFRNFDIKSSADKLLIYLTFYINVAL   80 (174)
Q Consensus         1 mAYHS~f~~~~~~~~~~g~alLPlrt~~rGPAp~~~~~~~DIIDEal~~FrAN~fFrnfEIKg~aDR~LIYltLyi~~CL   80 (174)
                      =||||+|++++. +.+||||||||||++|||||+ +++++|||||||+|||||||||||||||+||||||||||||+|||
T Consensus         2 PAYHS~f~~~~~-~~vgn~~lLPlrt~~rGPAp~-~~~~~DIiDEal~~FraNvfFrnfeIkg~ADR~LIYltlyi~eCL   79 (178)
T 1k8k_E            2 PAYHSSLMDPDT-KLIGNMALLPIRSQFKGPAPR-ETKDTDIVDEAIYYFKANVFFKNYEIKNEADRTLIYITLYISECL   79 (178)
T ss_dssp             CCCCCCCCCTTC-EEETTEEECCBCCSSCSSCCB-CCSSCCHHHHHHHHHHHHTTCSCCCCCSHHHHHHHHHHHHHHHHH
T ss_pred             Ccccchhccccc-ceEcceeEEeeeccCCCCCCC-CCCccchHHHHHHHHHhhhhhhccccCCCCceEeeeHHHHHHHHH
Confidence            099999998744 568889999999999999998 567899999999999999999999999999999999999999999


Q ss_pred             HHhhcCCCHHHHHHHHHHhcccCCCCCCCCCCCCCccccCCCChhHHHHHHHHHHHHHHHHHHHHHhhhcCCC-CCCchh
Q 030601           81 KRLEGRRTLAEGTKAIINLGLEKVPVPGEPNFPFPGLFALPQSQKEAELFRNYLKQIREETSGRLLSVAYRPN-GTPNKW  159 (174)
Q Consensus        81 kkl~~~~~~~ea~k~l~~la~~~F~iPGd~gFpLn~~y~~P~~~~e~d~lR~Yl~Q~RqEl~~RL~ervy~~~-~~psKw  159 (174)
                      |||++|++++||+|+|+++|+++|+||||+|||||++|++|+|++|+|+||+||+|+|||+|.|||||||+++ ++||||
T Consensus        80 kkl~~~~~k~ea~k~l~~lal~~F~iPGd~gFpLn~~y~~P~~~~e~d~lR~Yl~QlRqEl~~RL~ervf~~~~~~psKw  159 (178)
T 1k8k_E           80 KKLQKCNSKSQGEKEMYTLGITNFPIPGEPGFPLNAIYAKPANKQEDEVMRAYLQQLRQETGLRLCEKVFDPQNDKPSKW  159 (178)
T ss_dssp             HHHTSCCSHHHHHHHHHHHHHSCCCCTTSTTCTTTTTSCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHBCSSSSCBCHH
T ss_pred             HHhhcCCCHHHHHHHHHHHhhhcCCCCCCCCCCccccccCCCChhHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCcc
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999977 899999


Q ss_pred             hhhhcccccccccC
Q 030601          160 WLAFAKRKFMNIIV  173 (174)
Q Consensus       160 Wm~FaKRkFM~ksL  173 (174)
                      ||||+|||||||||
T Consensus       160 Wl~FaKRkFM~ksl  173 (178)
T 1k8k_E          160 WTCFVKRQFMNKSL  173 (178)
T ss_dssp             HHTTTTCCGGGCCC
T ss_pred             ceeehhhhhhcccc
Confidence            99999999999998

>3dwl_E Actin-related protein 2/3 complex subunit 3; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=100.00  E-value=8.8e-100  Score=620.49  Aligned_cols=171  Identities=43%  Similarity=0.806  Sum_probs=63.0

Q ss_pred             cccccCCCCCCcceeeCccccccccCCCCCCCCCCCCCcchHHHHHHhhhhhccccccccCCCCceehHhHHHHHHHHHH
Q 030601            2 VYHSSFVDEEGVTKACGCPLLPLKSHIKGPAPASDQDRTDIVDEAITFFRANVFFRNFDIKSSADKLLIYLTFYINVALK   81 (174)
Q Consensus         2 AYHS~f~~~~~~~~~~g~alLPlrt~~rGPAp~~~~~~~DIIDEal~~FrAN~fFrnfEIKg~aDR~LIYltLyi~~CLk   81 (174)
                      ||||+|+++++++.+||||||||||++|||||+++++++|||||||+|||||||||||||||+|||||||+||||+|||+
T Consensus         3 AYHS~f~~~~~~~~iGn~~lLPlrt~~rGPA~~~~~~~~DIiDEal~~FrANvfFrnfeIkg~ADR~LIYltlyi~~CLk   82 (174)
T 3dwl_E            3 AYHSSFLSLTDVPTTGNIAMLPLKTKFRGPAYPADESQMDIIDECIGLFRANCFFRNFEIKGPADRTLIYGTLFISECLG   82 (174)
T ss_dssp             -----------------------------------------CHHHHHHHHHHTTCCCC-----CTHHHHHHHHHHHSCC-
T ss_pred             CccccccCCCcceeEccceeeeecccCCCCCCCCCCCCcChHHHHHHHHHhhhhhhccccCCCCceeeehHHHHHHHHHH
Confidence            89999998766667778999999999999999987778999999999999999999999999999999999999999999


Q ss_pred             HhhcCCCHHHHHHHHHHhcccCCCCCCCCCCCCCccccCCCChhHHHHHHHHHHHHHHHHHHHHHhhhcCCC-CCCchhh
Q 030601           82 RLEGRRTLAEGTKAIINLGLEKVPVPGEPNFPFPGLFALPQSQKEAELFRNYLKQIREETSGRLLSVAYRPN-GTPNKWW  160 (174)
Q Consensus        82 kl~~~~~~~ea~k~l~~la~~~F~iPGd~gFpLn~~y~~P~~~~e~d~lR~Yl~Q~RqEl~~RL~ervy~~~-~~psKwW  160 (174)
                      ||++| +++||+|+|+++|+++|+||||+|||||++|++|+|++|+|+||+||+|+|||+|.|||||||+++ ++|||||
T Consensus        83 kl~~~-sk~ea~k~l~~lal~~F~iPGd~gFpLn~~y~~P~~~~e~d~lR~Yl~QlRqEl~~RL~ervf~~~~~kpsKwW  161 (174)
T 3dwl_E           83 RVNGL-NYRDAERQLNSLALENFSIPGSAGFPLNALYAPPLSPQDAEIMRTYLTQFRQELAYRLLSHVYATEKDHPSKWW  161 (174)
T ss_dssp             -----------CCCCC---------------------------------------CCGGGTTTTTC-----------CTT
T ss_pred             HHhcc-CHHHHHHHHHHHHHhcCCCCCCCCCCccccccCCCChhHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCccHHH
Confidence            99999 999999999999999999999999999999999999999999999999999999999999999877 8999999


Q ss_pred             hhhcccccccccC
Q 030601          161 LAFAKRKFMNIIV  173 (174)
Q Consensus       161 m~FaKRkFM~ksL  173 (174)
                      |||+|||||||||
T Consensus       162 l~F~KRkFM~ksL  174 (174)
T 3dwl_E          162 TCFSKRRFMNKAL  174 (174)
T ss_dssp             SGGGGCCGGGC--
T ss_pred             HHHHHHhhhcccC
Confidence            9999999999997

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	174
d1k8ke_	174	a.148.1.1 (E:) Arp2/3 complex 21 kDa subunit ARPC3	2e-82

>d1k8ke_ a.148.1.1 (E:) Arp2/3 complex 21 kDa subunit ARPC3 {Cow (Bos taurus) [TaxId: 9913]} Length = 174

class: All alpha proteins
fold: Arp2/3 complex 21 kDa subunit ARPC3
superfamily: Arp2/3 complex 21 kDa subunit ARPC3
family: Arp2/3 complex 21 kDa subunit ARPC3
domain: Arp2/3 complex 21 kDa subunit ARPC3
species: Cow (Bos taurus) [TaxId: 9913]

 Score =  238 bits (610), Expect = 2e-82
 Identities = 79/169 (46%), Positives = 112/169 (66%), Gaps = 3/169 (1%)

Query: 3   YHSSFVDEEGVTKACGCPLLPLKSHIKGPAPASDQDRTDIVDEAITFFRANVFFRNFDIK 62
           YHSS +D           LLP++S  KGPAP   +D TDIVDEAI +F+ANVFF+N++IK
Sbjct: 3   YHSSLMDP-DTKLIGNMALLPIRSQFKGPAPRETKD-TDIVDEAIYYFKANVFFKNYEIK 60

Query: 63  SSADKLLIYLTFYINVALKRLEGRRTLAEGTKAIINLGLEKVPVPGEPNFPFPGLFALPQ 122
           + AD+ LIY+T YI+  LK+L+   + ++G K +  LG+   P+PGEP FP   ++A P 
Sbjct: 61  NEADRTLIYITLYISECLKKLQKCNSKSQGEKEMYTLGITNFPIPGEPGFPLNAIYAKPA 120

Query: 123 SQKEAELFRNYLKQIREETSGRLLSVAYRP-NGTPNKWWLAFAKRKFMN 170
           +++E E+ R YL+Q+R+ET  RL    + P N  P+KWW  F KR+FMN
Sbjct: 121 NKQEDEVMRAYLQQLRQETGLRLCEKVFDPQNDKPSKWWTCFVKRQFMN 169

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	174
d1k8ke_	174	Arp2/3 complex 21 kDa subunit ARPC3 {Cow (Bos taur	100.0

>d1k8ke_ a.148.1.1 (E:) Arp2/3 complex 21 kDa subunit ARPC3 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: Arp2/3 complex 21 kDa subunit ARPC3
superfamily: Arp2/3 complex 21 kDa subunit ARPC3
family: Arp2/3 complex 21 kDa subunit ARPC3
domain: Arp2/3 complex 21 kDa subunit ARPC3
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=2.1e-97  Score=604.31  Aligned_cols=171  Identities=45%  Similarity=0.874  Sum_probs=163.7

Q ss_pred             cccccCCCCCCcceeeCccccccccCCCCCCCCCCCCCcchHHHHHHhhhhhccccccccCCCCceehHhHHHHHHHHHH
Q 030601            2 VYHSSFVDEEGVTKACGCPLLPLKSHIKGPAPASDQDRTDIVDEAITFFRANVFFRNFDIKSSADKLLIYLTFYINVALK   81 (174)
Q Consensus         2 AYHS~f~~~~~~~~~~g~alLPlrt~~rGPAp~~~~~~~DIIDEal~~FrAN~fFrnfEIKg~aDR~LIYltLyi~~CLk   81 (174)
                      ||||+|.+. +++.+||||||||||++|||||+. ++++|||||||+||||||||||||||||||||||||||||+|||+
T Consensus         2 AyHS~f~~~-~~~~vgn~~llPlrt~~rGPAp~~-~~~~DIIDEal~~FraN~fFrnfeik~~aDR~LIYltlyiseCL~   79 (174)
T d1k8ke_           2 AYHSSLMDP-DTKLIGNMALLPIRSQFKGPAPRE-TKDTDIVDEAIYYFKANVFFKNYEIKNEADRTLIYITLYISECLK   79 (174)
T ss_dssp             CCCCCCCCT-TCEEETTEEECCBCCSSCSSCCBC-CSSCCHHHHHHHHHHHHTTCSCCCCCSHHHHHHHHHHHHHHHHHH
T ss_pred             CccccccCC-CcceECcceeeeeeccccCCCCCC-CCcccHHHHHHHHHHhhHHhhccccCCccceeeeehHHHHHHHHH
Confidence            899999754 467788999999999999999975 458999999999999999999999999999999999999999999


Q ss_pred             HhhcCCCHHHHHHHHHHhcccCCCCCCCCCCCCCccccCCCChhHHHHHHHHHHHHHHHHHHHHHhhhcCCC-CCCchhh
Q 030601           82 RLEGRRTLAEGTKAIINLGLEKVPVPGEPNFPFPGLFALPQSQKEAELFRNYLKQIREETSGRLLSVAYRPN-GTPNKWW  160 (174)
Q Consensus        82 kl~~~~~~~ea~k~l~~la~~~F~iPGd~gFpLn~~y~~P~~~~e~d~lR~Yl~Q~RqEl~~RL~ervy~~~-~~psKwW  160 (174)
                      ||++|++++||+|+|+++|+++|+||||+|||||++|++|+|++|+|+||+||+|+|||||.|||||||+++ ++|||||
T Consensus        80 kl~~~~~~~~a~k~l~~lal~~f~iPGd~gFpLn~~y~~P~~~~e~e~lR~Yl~Q~RqEl~~RL~ervy~~~~~~psKwW  159 (174)
T d1k8ke_          80 KLQKCNSKSQGEKEMYTLGITNFPIPGEPGFPLNAIYAKPANKQEDEVMRAYLQQLRQETGLRLCEKVFDPQNDKPSKWW  159 (174)
T ss_dssp             HHTSCCSHHHHHHHHHHHHHSCCCCTTSTTCTTTTTSCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHBCSSSSCBCHHH
T ss_pred             HHhcCcCHHHHHHHHHHHHhhcCCCCCCCCCCcccccCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCcee
Confidence            999999999999999999999999999999999999999999999999999999999999999999999765 9999999


Q ss_pred             hhhcccccccccCC
Q 030601          161 LAFAKRKFMNIIVP  174 (174)
Q Consensus       161 m~FaKRkFM~ksL~  174 (174)
                      |||+|||||||||-
T Consensus       160 l~FaKRkFM~KsLs  173 (174)
T d1k8ke_         160 TCFVKRQFMNKSLS  173 (174)
T ss_dssp             HTTTTCCGGGCCCC
T ss_pred             eeeecccccccccc
Confidence            99999999999983