Citrus Sinensis ID: 030603

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170----
Protein Sequence
MTNPRVFFDILIGKMNKGRVVMELFADVTPKTAENFRALCTGEKGIGMSGKPLHYKGSTFHRIIPNFMCQGGDFTRGNGTGGESIYGMKFADENFKMKHTGPGILSMANAGPNTNGSQFFICTQKTPWLDGKHVVFGKVVDGYSVIKDMEKVGSESGRTSQTVVIEDCGQLAEK
Secondary Structure (PSIPRED)
ccccEEEEEEEEccEEccEEEEEEccccccHHHHHHHHHHcccccccccccccccccccccEEccccEEEcccccccccccccccccccccccccccccccccEEEccccccccccccEEEEcccccccccccEEEEEEEccHHHHHHHHHcccccccccccEEEEcccccccc
Secondary Structure Prediction (SSPRO)
ccccEEEEEEEEccEEEEEEEEEEcccccHHHHHHHHHHHHccccEcccccEccccccEccEEEcccEEEEccccccccccccccccccEcccccccccccccEEEEcccccccEcccEEEEccccHHHcccccEEEEEEEcHHHHHHHHccccccccccccEEEEEEEEcccc
Coil and Loop (DISEMBL)
MTNPRVFFDILIGKMNKGRVVMELFADVTPKTAENFRALCtgekgigmsgkplhykgstfhriipnfmcqggdftrgngtggesiygmkfadenfkmkhtgpgilsmanagpntngsqffictqktpwldgkhvvfgKVVDGYSVIKDMekvgsesgrtsqtVVIEDCGQLAEK
Flexible Loop (DISEMBL)
MTNPRVFFDILigkmnkgrVVMELFADVTPKTAENFRALCTGEKGIGMSGKPLHYKGSTFHRIIPNFMCQGGDFTRGNGTGGESIYGMKFADENFKMKHTGPGILSMANAGPNTNGSQFFICTQKTPWLDGKHVVFGKVVDGYSVIKDMekvgsesgrtsqtvviedcgqlaek
Low Complexity Region (SEG)
MTNPRVFFDILIGKMNKGRVVMELFADVTPKTAENFRALCTGEKGIGMSGKPLHYKGSTFHRIIPNFMCQggdftrgngtggESIYGMKFADENFKMKHTGPGILSMANAGPNTNGSQFFICTQKTPWLDGKHVVFGKVVDGYSVIKDMEKVGSESGRTSQTVVIEDCGQLAEK
Disordered region (IsUnstruct)
*****VFFDILIGKMNKGRVVMELFADVTPKTAENFRALCTGEKGIGMSGKPLHYKGSTFHRIIPNFMCQGGDFTRGNGTGGESIYGMKFADENFKMKHTGPGILSMANAGPNTNGSQFFICTQKTPWLDGKHVVFGKVVDGYSVIKDM*************************
Disordered Region (DISOPRED)
*TNPRVFFDILIGKMNKGRVVMELFADVTPKTAENFRALCTGEKGIGMSGKPLHYKGSTFHRIIPNFMCQGGDFTRGNGTGGESIYGMKFADENFKMKHTGPGILSMANAGPNTNGSQFFICTQKTPWLDGKHVVFGKVVDGYSVIK***K***********VVIEDCGQL***
Disordered Region (DISEMBL)
MTNPRVFFDILIGKMNKGRVVMELFADVTPKTAENFRALCTGEKGIGMSGKPLHYKGSTFHRIIPNFMCQGGDFTRGNGTGGESIYGMKFADENFKMKHTGPGILSMANAGPNTNGSQFFICTQKTPWLDGKHVVFGKVVDGYSVIKDMEK*********QTVVIEDCGQLAEK
Disordered Region (DISPRO)
*TNPRVFFDILIGKMNKGRVVMELFADVTPKTAENFRALCTGEKGIGMSGKPLHYKGSTFHRIIPNFMCQGGDFTRGNGTGGESIYGMKFADENFKMKHTGPGILSMANAGPNTNGSQFFICTQKTPWLDGKHVVFGKVVDGYSVIKDMEKVGSESGRTSQTVVIEDCGQLA**
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MTNPRVFFDILIGKMNKGRVVMELFADVTPKTAENFRALCTGEKGIGMSGKPLHYKGSTFHRIIPNFMCQGGDFTRGNGTGGESIYGMKFADENFKMKHTGPGILSMANAGPNTNGSQFFICTQKTPWLDGKHVVFGKVVDGYSVIKDMEKVGSESGRTSQTVVIEDCGQLAEK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	174	2.2.26 [Sep-21-2011]
Q38867	176	Peptidyl-prolyl cis-trans	yes	no	0.982	0.971	0.830	2e-81
Q8W171	172	Peptidyl-prolyl cis-trans	no	no	0.977	0.988	0.794	2e-78
Q39613	172	Peptidyl-prolyl cis-trans	N/A	no	0.988	1.0	0.790	3e-78
Q38900	173	Peptidyl-prolyl cis-trans	no	no	0.982	0.988	0.766	2e-77
O49886	172	Peptidyl-prolyl cis-trans	N/A	no	0.988	1.0	0.767	5e-77
P24525	171	Peptidyl-prolyl cis-trans	N/A	no	0.982	1.0	0.766	3e-76
P21568	171	Peptidyl-prolyl cis-trans	N/A	no	0.982	1.0	0.795	5e-76
Q9SKQ0	174	Peptidyl-prolyl cis-trans	no	no	0.982	0.982	0.736	1e-73
P21569	172	Peptidyl-prolyl cis-trans	N/A	no	0.988	1.0	0.738	1e-73
P34790	172	Peptidyl-prolyl cis-trans	no	no	0.988	1.0	0.732	3e-72

>sp|Q38867|CP19C_ARATH Peptidyl-prolyl cis-trans isomerase CYP19-3 OS=Arabidopsis thaliana GN=CYP19-3 PE=2 SV=2

 Score =  301 bits (770), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 142/171 (83%), Positives = 153/171 (89%)

Query: 1   MTNPRVFFDILIGKMNKGRVVMELFADVTPKTAENFRALCTGEKGIGMSGKPLHYKGSTF 60
           M NP+VFFDILIGKM  GRVVMELFADVTP+TA NFRALCTGE GIG +GK LHYKGS F
Sbjct: 1   MANPKVFFDILIGKMKAGRVVMELFADVTPRTANNFRALCTGENGIGKAGKALHYKGSAF 60

Query: 61  HRIIPNFMCQGGDFTRGNGTGGESIYGMKFADENFKMKHTGPGILSMANAGPNTNGSQFF 120
           HRIIP FMCQGGDFTRGNGTGGESIYG KF DENFK+KHTGPGILSMAN+GPNTNGSQFF
Sbjct: 61  HRIIPGFMCQGGDFTRGNGTGGESIYGSKFEDENFKLKHTGPGILSMANSGPNTNGSQFF 120

Query: 121 ICTQKTPWLDGKHVVFGKVVDGYSVIKDMEKVGSESGRTSQTVVIEDCGQL 171
           ICT+KT WLDGKHVVFGKVVDGY+V+K ME VGS+ G  S+ VVIEDCG+L
Sbjct: 121 ICTEKTSWLDGKHVVFGKVVDGYNVVKAMEDVGSDMGNPSERVVIEDCGEL 171

PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides.
Arabidopsis thaliana (taxid: 3702)
EC: 5EC: .EC: 2EC: .EC: 1EC: .EC: 8

>sp|Q8W171|CYP1_SOYBN Peptidyl-prolyl cis-trans isomerase 1 OS=Glycine max GN=Cyp1 PE=2 SV=1

 Score =  291 bits (744), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 135/170 (79%), Positives = 154/170 (90%)

Query: 1   MTNPRVFFDILIGKMNKGRVVMELFADVTPKTAENFRALCTGEKGIGMSGKPLHYKGSTF 60
           M NP+VFFD+ IG  + GR+VMEL+ADVTP+TAENFRALCTGEKG+G SGKPLHYKGS+F
Sbjct: 1   MPNPKVFFDMTIGGQSAGRIVMELYADVTPRTAENFRALCTGEKGVGRSGKPLHYKGSSF 60

Query: 61  HRIIPNFMCQGGDFTRGNGTGGESIYGMKFADENFKMKHTGPGILSMANAGPNTNGSQFF 120
           HR+IP+FMCQGGDFT GNGTGGESIYG KFADENF  KHTGPGILSMANAGP TNGSQFF
Sbjct: 61  HRVIPSFMCQGGDFTAGNGTGGESIYGAKFADENFVKKHTGPGILSMANAGPGTNGSQFF 120

Query: 121 ICTQKTPWLDGKHVVFGKVVDGYSVIKDMEKVGSESGRTSQTVVIEDCGQ 170
           ICT+KT WLDGKHVVFG+V++G +V+KD+EKVGS SGRTS+ VVI +CGQ
Sbjct: 121 ICTEKTEWLDGKHVVFGQVIEGLNVVKDIEKVGSGSGRTSKPVVIANCGQ 170

PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides.

Glycine max (taxid: 3847)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

>sp|Q39613|CYPH_CATRO Peptidyl-prolyl cis-trans isomerase OS=Catharanthus roseus GN=PCKR1 PE=2 SV=1

 Score =  290 bits (742), Expect = 3e-78,   Method: Compositional matrix adjust.
 Identities = 136/172 (79%), Positives = 150/172 (87%)

Query: 1   MTNPRVFFDILIGKMNKGRVVMELFADVTPKTAENFRALCTGEKGIGMSGKPLHYKGSTF 60
           M NPRVFFD+ +G    GR+VMELFAD TP+TAENFRALCTGEKG G SGKPLHYK S+F
Sbjct: 1   MPNPRVFFDMSVGGQPAGRIVMELFADTTPRTAENFRALCTGEKGTGRSGKPLHYKDSSF 60

Query: 61  HRIIPNFMCQGGDFTRGNGTGGESIYGMKFADENFKMKHTGPGILSMANAGPNTNGSQFF 120
           HR+IP FMCQGGDFT GNGTGGESIYG KFADENF  KHTGPGILSMANAGPNTNGSQFF
Sbjct: 61  HRVIPGFMCQGGDFTAGNGTGGESIYGAKFADENFIKKHTGPGILSMANAGPNTNGSQFF 120

Query: 121 ICTQKTPWLDGKHVVFGKVVDGYSVIKDMEKVGSESGRTSQTVVIEDCGQLA 172
           ICT KT WLDGKHVVFG+VV+G  V+K +EKVGS SGRT++ VV+EDCGQL+
Sbjct: 121 ICTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTAKKVVVEDCGQLS 172

PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides.

Catharanthus roseus (taxid: 4058)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

>sp|Q38900|CP19A_ARATH Peptidyl-prolyl cis-trans isomerase CYP19-1 OS=Arabidopsis thaliana GN=CYP19-1 PE=1 SV=1

 Score =  287 bits (735), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 131/171 (76%), Positives = 153/171 (89%)

Query: 2   TNPRVFFDILIGKMNKGRVVMELFADVTPKTAENFRALCTGEKGIGMSGKPLHYKGSTFH 61
           TNP+V+FD+ +G  + GR+VMEL+AD TP+TAENFRALCTGE+GIG  GKPLHYKGS+FH
Sbjct: 3   TNPKVYFDMTVGGKSAGRIVMELYADTTPETAENFRALCTGERGIGKQGKPLHYKGSSFH 62

Query: 62  RIIPNFMCQGGDFTRGNGTGGESIYGMKFADENFKMKHTGPGILSMANAGPNTNGSQFFI 121
           R+IP FMCQGGDFT GNGTGGESIYG KF DENF  KHTGPGILSMANAG NTNGSQFFI
Sbjct: 63  RVIPKFMCQGGDFTAGNGTGGESIYGSKFKDENFIKKHTGPGILSMANAGANTNGSQFFI 122

Query: 122 CTQKTPWLDGKHVVFGKVVDGYSVIKDMEKVGSESGRTSQTVVIEDCGQLA 172
           CT+KT WLDGKHVVFG+VV+G +V++D+EKVGS+SGRTS+ VVI DCGQ++
Sbjct: 123 CTEKTSWLDGKHVVFGQVVEGLNVVRDIEKVGSDSGRTSKPVVIADCGQIS 173

PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides.

Arabidopsis thaliana (taxid: 3702)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

>sp|O49886|CYPH_LUPLU Peptidyl-prolyl cis-trans isomerase OS=Lupinus luteus PE=2 SV=1

 Score =  286 bits (731), Expect = 5e-77,   Method: Compositional matrix adjust.
 Identities = 132/172 (76%), Positives = 151/172 (87%)

Query: 1   MTNPRVFFDILIGKMNKGRVVMELFADVTPKTAENFRALCTGEKGIGMSGKPLHYKGSTF 60
           M+NP+VFFD+ I     GR+VMEL+AD TP+TAENFRALCTGEKG+G SGKPLHYKGSTF
Sbjct: 1   MSNPKVFFDMAIAGNPAGRIVMELYADTTPRTAENFRALCTGEKGVGRSGKPLHYKGSTF 60

Query: 61  HRIIPNFMCQGGDFTRGNGTGGESIYGMKFADENFKMKHTGPGILSMANAGPNTNGSQFF 120
           HR+IPNFMCQGGDFT GNGTG ESIYG KFADENF  +HTGPGILSMANAG  TNGSQFF
Sbjct: 61  HRVIPNFMCQGGDFTAGNGTGAESIYGAKFADENFIKRHTGPGILSMANAGAGTNGSQFF 120

Query: 121 ICTQKTPWLDGKHVVFGKVVDGYSVIKDMEKVGSESGRTSQTVVIEDCGQLA 172
           ICT+KT WLDGKHVVFGKV++G +V++D+EKVGS SG+TS+ V I DCGQL+
Sbjct: 121 ICTEKTEWLDGKHVVFGKVIEGMNVVRDIEKVGSGSGKTSRPVTIADCGQLS 172

PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides.

Lupinus luteus (taxid: 3873)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

>sp|P24525|CYPH_BRANA Peptidyl-prolyl cis-trans isomerase OS=Brassica napus GN=CYP PE=2 SV=2

 Score =  283 bits (725), Expect = 3e-76,   Method: Compositional matrix adjust.
 Identities = 131/171 (76%), Positives = 148/171 (86%)

Query: 1   MTNPRVFFDILIGKMNKGRVVMELFADVTPKTAENFRALCTGEKGIGMSGKPLHYKGSTF 60
           M NP+V+FD+ +G    GR+VMEL+AD  P+TAENFRALCTGE+GIG SGKPLHYKGS F
Sbjct: 1   MVNPKVYFDMTVGDKAAGRIVMELYADTVPETAENFRALCTGERGIGKSGKPLHYKGSAF 60

Query: 61  HRIIPNFMCQGGDFTRGNGTGGESIYGMKFADENFKMKHTGPGILSMANAGPNTNGSQFF 120
           HR+IP FMCQGGDFT GNGTGGESIYGMKF DENF  KHTGPGILSM NAG NTNGSQFF
Sbjct: 61  HRVIPKFMCQGGDFTAGNGTGGESIYGMKFKDENFVKKHTGPGILSMRNAGSNTNGSQFF 120

Query: 121 ICTQKTPWLDGKHVVFGKVVDGYSVIKDMEKVGSESGRTSQTVVIEDCGQL 171
           ICT+KT WLDGKHVVFG+VV+G  V++D+EKVGS+SGRTS+ VV  DCGQL
Sbjct: 121 ICTEKTSWLDGKHVVFGQVVEGMDVVRDIEKVGSDSGRTSKKVVTCDCGQL 171

PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides.

Brassica napus (taxid: 3708)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

>sp|P21568|CYPH_SOLLC Peptidyl-prolyl cis-trans isomerase OS=Solanum lycopersicum GN=CYP PE=2 SV=1

 Score =  283 bits (723), Expect = 5e-76,   Method: Compositional matrix adjust.
 Identities = 136/171 (79%), Positives = 144/171 (84%)

Query: 1   MTNPRVFFDILIGKMNKGRVVMELFADVTPKTAENFRALCTGEKGIGMSGKPLHYKGSTF 60
           M NP+VFFD+ IG    GRVVMELFAD TPKTAENFRALCTGEKG+G  GKPLHYKGSTF
Sbjct: 1   MANPKVFFDLTIGGAPAGRVVMELFADTTPKTAENFRALCTGEKGVGKMGKPLHYKGSTF 60

Query: 61  HRIIPNFMCQGGDFTRGNGTGGESIYGMKFADENFKMKHTGPGILSMANAGPNTNGSQFF 120
           HR+IP FMCQGGDFT GNGTGGESIYG KF DENF  KHTGPGILSMANAGP TNGSQFF
Sbjct: 61  HRVIPGFMCQGGDFTAGNGTGGESIYGAKFNDENFVKKHTGPGILSMANAGPGTNGSQFF 120

Query: 121 ICTQKTPWLDGKHVVFGKVVDGYSVIKDMEKVGSESGRTSQTVVIEDCGQL 171
           ICT KT WL+GKHVVFG+VV+G  VIK  E VGS SGR S+ VVI DCGQL
Sbjct: 121 ICTAKTEWLNGKHVVFGQVVEGMDVIKKAEAVGSSSGRCSKPVVIADCGQL 171

PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides.

Solanum lycopersicum (taxid: 4081)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

>sp|Q9SKQ0|CP19B_ARATH Peptidyl-prolyl cis-trans isomerase CYP19-2 OS=Arabidopsis thaliana GN=CYP19-2 PE=1 SV=1

 Score =  275 bits (703), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 126/171 (73%), Positives = 150/171 (87%)

Query: 2   TNPRVFFDILIGKMNKGRVVMELFADVTPKTAENFRALCTGEKGIGMSGKPLHYKGSTFH 61
           ++P+VFFD+ IG    G++VMEL+ D TPKTAENFRALCTGEKG+G SGKPLH+KGS+FH
Sbjct: 3   SHPKVFFDMTIGGAPAGKIVMELYTDKTPKTAENFRALCTGEKGVGRSGKPLHFKGSSFH 62

Query: 62  RIIPNFMCQGGDFTRGNGTGGESIYGMKFADENFKMKHTGPGILSMANAGPNTNGSQFFI 121
           R+IPNFMCQGGDFT+GNGTGGESIYG KF DENF+ KHTGPGILSMANAG NTNGSQFFI
Sbjct: 63  RVIPNFMCQGGDFTKGNGTGGESIYGAKFEDENFERKHTGPGILSMANAGANTNGSQFFI 122

Query: 122 CTQKTPWLDGKHVVFGKVVDGYSVIKDMEKVGSESGRTSQTVVIEDCGQLA 172
           CT KT WLDGKHVVFG+VV+G  V+K +EK+GS SG+ ++ VVI DCG+++
Sbjct: 123 CTVKTDWLDGKHVVFGQVVEGLDVVKAIEKIGSSSGKPTKPVVIADCGEIS 173

PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides.

Arabidopsis thaliana (taxid: 3702)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

>sp|P21569|CYPH_MAIZE Peptidyl-prolyl cis-trans isomerase OS=Zea mays GN=CYP PE=2 SV=1

 Score =  275 bits (703), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 127/172 (73%), Positives = 144/172 (83%)

Query: 1   MTNPRVFFDILIGKMNKGRVVMELFADVTPKTAENFRALCTGEKGIGMSGKPLHYKGSTF 60
           M NPRVFFD+ +G    GR+VMEL+A+  PKTAENFRALCTGEKG+G SGKPLHYKGSTF
Sbjct: 1   MANPRVFFDMTVGGAPAGRIVMELYANEVPKTAENFRALCTGEKGVGKSGKPLHYKGSTF 60

Query: 61  HRIIPNFMCQGGDFTRGNGTGGESIYGMKFADENFKMKHTGPGILSMANAGPNTNGSQFF 120
           HR+IP FMCQGGDFTRGNGTGGESIYG KF DE F  K   PG+LSMANAGPNTNGSQFF
Sbjct: 61  HRVIPEFMCQGGDFTRGNGTGGESIYGEKFPDEKFVRKQPAPGVLSMANAGPNTNGSQFF 120

Query: 121 ICTQKTPWLDGKHVVFGKVVDGYSVIKDMEKVGSESGRTSQTVVIEDCGQLA 172
           ICT  TPWLDGKHVVFG+VV+G  V+K +EKVG+ +G TS+ V + DCGQL+
Sbjct: 121 ICTVATPWLDGKHVVFGQVVEGMDVVKAIEKVGTRNGSTSKVVKVADCGQLS 172

PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides.

Zea mays (taxid: 4577)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

>sp|P34790|CP18C_ARATH Peptidyl-prolyl cis-trans isomerase CYP18-3 OS=Arabidopsis thaliana GN=CYP18-3 PE=1 SV=1

 Score =  270 bits (691), Expect = 3e-72,   Method: Compositional matrix adjust.
 Identities = 126/172 (73%), Positives = 146/172 (84%)

Query: 1   MTNPRVFFDILIGKMNKGRVVMELFADVTPKTAENFRALCTGEKGIGMSGKPLHYKGSTF 60
           M  P+V+FD+ I     GR+VMEL+ D TP+TAENFRALCTGEKG+G +GKPLH+KGS F
Sbjct: 1   MAFPKVYFDMTIDGQPAGRIVMELYTDKTPRTAENFRALCTGEKGVGGTGKPLHFKGSKF 60

Query: 61  HRIIPNFMCQGGDFTRGNGTGGESIYGMKFADENFKMKHTGPGILSMANAGPNTNGSQFF 120
           HR+IPNFMCQGGDFT GNGTGGESIYG KF DENF+ KHTGPGILSMANAG NTNGSQFF
Sbjct: 61  HRVIPNFMCQGGDFTAGNGTGGESIYGSKFEDENFERKHTGPGILSMANAGANTNGSQFF 120

Query: 121 ICTQKTPWLDGKHVVFGKVVDGYSVIKDMEKVGSESGRTSQTVVIEDCGQLA 172
           ICT KT WLDGKHVVFG+VV+G  V+K +EKVGS SG+ ++ VV+ DCGQL+
Sbjct: 121 ICTVKTDWLDGKHVVFGQVVEGLDVVKAIEKVGSSSGKPTKPVVVADCGQLS 172

PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides. Triggers the activation of bacterial AvrRpt2 protease activity upon infection by P.syringae. Activated AvrRpt2 confers virulence in plant lacking the RPS2 resistance gene. In plants expressing RPS2, the AvrRpt2-mediated degradation of RIN4 activates RPS2, which induces hypersensitive response (HR) and plant resistance.

Arabidopsis thaliana (taxid: 3702)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	174
255561905	174	cyclophilin, putative [Ricinus communis]	0.994	0.994	0.919	3e-90
196166898	174	cyclophilin [Ziziphus jujuba]	1.0	1.0	0.902	3e-89
359488033	235	PREDICTED: peptidyl-prolyl cis-trans iso	0.994	0.736	0.878	9e-88
147790636	174	hypothetical protein VITISV_041753 [Viti	0.994	0.994	0.878	2e-87
353681902	174	CYP [Gossypium hirsutum]	0.994	0.994	0.872	2e-86
224144521	174	predicted protein [Populus trichocarpa]	0.994	0.994	0.843	6e-85
388512671	174	unknown [Lotus japonicus]	0.994	0.994	0.855	1e-83
351726417	175	uncharacterized protein LOC100306275 [Gl	0.988	0.982	0.860	2e-83
356506001	175	PREDICTED: peptidyl-prolyl cis-trans iso	0.988	0.982	0.854	5e-83
55247974	174	cyclophilin 1 [Codonopsis lanceolata]	0.994	0.994	0.843	5e-83

>gi|255561905|ref|XP_002521961.1| cyclophilin, putative [Ricinus communis] gi|223538765|gb|EEF40365.1| cyclophilin, putative [Ricinus communis]

 Score =  335 bits (860), Expect = 3e-90,   Method: Compositional matrix adjust.
 Identities = 159/173 (91%), Positives = 166/173 (95%)

Query: 1   MTNPRVFFDILIGKMNKGRVVMELFADVTPKTAENFRALCTGEKGIGMSGKPLHYKGSTF 60
           M+NP+VFFDILIGKM  GR+VMELFAD TPKTAENFRALCTGEKGIG  GKPLHYKGSTF
Sbjct: 1   MSNPKVFFDILIGKMKAGRIVMELFADFTPKTAENFRALCTGEKGIGSVGKPLHYKGSTF 60

Query: 61  HRIIPNFMCQGGDFTRGNGTGGESIYGMKFADENFKMKHTGPGILSMANAGPNTNGSQFF 120
           HRIIPNFMCQGGDFTRGNGTGGESIYGMKFADENFKMKHTGPGILSMANAGPNTNGSQFF
Sbjct: 61  HRIIPNFMCQGGDFTRGNGTGGESIYGMKFADENFKMKHTGPGILSMANAGPNTNGSQFF 120

Query: 121 ICTQKTPWLDGKHVVFGKVVDGYSVIKDMEKVGSESGRTSQTVVIEDCGQLAE 173
           ICT+KTPWLDGKHVVFGKVVDGYSV+K+MEKVGSESGRTSQ VVIEDCGQ+ E
Sbjct: 121 ICTEKTPWLDGKHVVFGKVVDGYSVVKEMEKVGSESGRTSQGVVIEDCGQITE 173

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|196166898|gb|ACG70968.1| cyclophilin [Ziziphus jujuba]

 Score =  332 bits (852), Expect = 3e-89,   Method: Compositional matrix adjust.
 Identities = 157/174 (90%), Positives = 167/174 (95%)

Query: 1   MTNPRVFFDILIGKMNKGRVVMELFADVTPKTAENFRALCTGEKGIGMSGKPLHYKGSTF 60
           M+NP+VFFDILIGKM  GRVVMELFADVTPKTAENFR LCTGEKGIG+SGKPLHYKGSTF
Sbjct: 1   MSNPKVFFDILIGKMKAGRVVMELFADVTPKTAENFRVLCTGEKGIGISGKPLHYKGSTF 60

Query: 61  HRIIPNFMCQGGDFTRGNGTGGESIYGMKFADENFKMKHTGPGILSMANAGPNTNGSQFF 120
           HRIIPNFMCQGGDFTRGNGTGGESIYG KFADENFK+KHTGPGILSMANAGPNTNGSQFF
Sbjct: 61  HRIIPNFMCQGGDFTRGNGTGGESIYGTKFADENFKLKHTGPGILSMANAGPNTNGSQFF 120

Query: 121 ICTQKTPWLDGKHVVFGKVVDGYSVIKDMEKVGSESGRTSQTVVIEDCGQLAEK 174
           ICT+KTPWLDGKHVVFGKVVDGY+V+K+MEKVGS+SGRTSQ VVIEDCGQ+  K
Sbjct: 121 ICTEKTPWLDGKHVVFGKVVDGYNVVKEMEKVGSDSGRTSQPVVIEDCGQITGK 174

Source: Ziziphus jujuba

Species: Ziziphus jujuba

Genus: Ziziphus

Family: Rhamnaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359488033|ref|XP_003633689.1| PREDICTED: peptidyl-prolyl cis-trans isomerase CYP19-3-like [Vitis vinifera]

 Score =  327 bits (839), Expect = 9e-88,   Method: Compositional matrix adjust.
 Identities = 152/173 (87%), Positives = 164/173 (94%)

Query: 1   MTNPRVFFDILIGKMNKGRVVMELFADVTPKTAENFRALCTGEKGIGMSGKPLHYKGSTF 60
           M+NP+VFFDIL+GKM  GR+VMELFADVTPKTAENFRALCTGEKGIGMSGKPLHYKGS F
Sbjct: 62  MSNPKVFFDILVGKMKAGRIVMELFADVTPKTAENFRALCTGEKGIGMSGKPLHYKGSAF 121

Query: 61  HRIIPNFMCQGGDFTRGNGTGGESIYGMKFADENFKMKHTGPGILSMANAGPNTNGSQFF 120
           HRIIPNFMCQGGDFTRGNGTGGESI+GMKFADENF MKHTGPG+LSMANAGPNTNGSQFF
Sbjct: 122 HRIIPNFMCQGGDFTRGNGTGGESIHGMKFADENFTMKHTGPGVLSMANAGPNTNGSQFF 181

Query: 121 ICTQKTPWLDGKHVVFGKVVDGYSVIKDMEKVGSESGRTSQTVVIEDCGQLAE 173
           ICT KTPWLDGKHVVFGKVVDGYSV+K+MEKVG++SG T + VVIEDCGQ+ E
Sbjct: 182 ICTTKTPWLDGKHVVFGKVVDGYSVVKEMEKVGTDSGTTLEKVVIEDCGQIVE 234

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147790636|emb|CAN61038.1| hypothetical protein VITISV_041753 [Vitis vinifera]

 Score =  326 bits (836), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 152/173 (87%), Positives = 164/173 (94%)

Query: 1   MTNPRVFFDILIGKMNKGRVVMELFADVTPKTAENFRALCTGEKGIGMSGKPLHYKGSTF 60
           M+NP+VFFDIL+GKM  GR+VMELFADVTPKTAENFRALCTGEKGIGMSGKPLHYKGS F
Sbjct: 1   MSNPKVFFDILVGKMKAGRIVMELFADVTPKTAENFRALCTGEKGIGMSGKPLHYKGSAF 60

Query: 61  HRIIPNFMCQGGDFTRGNGTGGESIYGMKFADENFKMKHTGPGILSMANAGPNTNGSQFF 120
           HRIIPNFMCQGGDFTRGNGTGGESI+GMKFADENF MKHTGPG+LSMANAGPNTNGSQFF
Sbjct: 61  HRIIPNFMCQGGDFTRGNGTGGESIHGMKFADENFTMKHTGPGVLSMANAGPNTNGSQFF 120

Query: 121 ICTQKTPWLDGKHVVFGKVVDGYSVIKDMEKVGSESGRTSQTVVIEDCGQLAE 173
           ICT KTPWLDGKHVVFGKVVDGYSV+K+MEKVG++SG T + VVIEDCGQ+ E
Sbjct: 121 ICTTKTPWLDGKHVVFGKVVDGYSVVKEMEKVGTDSGTTLEKVVIEDCGQIVE 173

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|353681902|gb|AER12108.1| CYP [Gossypium hirsutum]

 Score =  323 bits (827), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 151/173 (87%), Positives = 161/173 (93%)

Query: 1   MTNPRVFFDILIGKMNKGRVVMELFADVTPKTAENFRALCTGEKGIGMSGKPLHYKGSTF 60
           M+NP+VFFDILIGK   GRVVMELFADV PKTAENFRALCTGEKG+G  GKPLHYKGS F
Sbjct: 1   MSNPKVFFDILIGKAKAGRVVMELFADVVPKTAENFRALCTGEKGVGQCGKPLHYKGSAF 60

Query: 61  HRIIPNFMCQGGDFTRGNGTGGESIYGMKFADENFKMKHTGPGILSMANAGPNTNGSQFF 120
           HRIIP+FMCQGGDFTRGNGTGGESIYGMKFADENF +KHTGPG LSMANAGPNTNGSQFF
Sbjct: 61  HRIIPSFMCQGGDFTRGNGTGGESIYGMKFADENFNLKHTGPGCLSMANAGPNTNGSQFF 120

Query: 121 ICTQKTPWLDGKHVVFGKVVDGYSVIKDMEKVGSESGRTSQTVVIEDCGQLAE 173
           ICT+KTPWLDGKHVVFGKVVDGYSV+K+MEKVGSESGRT Q VV+EDCGQ+ E
Sbjct: 121 ICTEKTPWLDGKHVVFGKVVDGYSVVKEMEKVGSESGRTLQPVVVEDCGQVEE 173

Source: Gossypium hirsutum

Species: Gossypium hirsutum

Genus: Gossypium

Family: Malvaceae

Order: Malvales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224144521|ref|XP_002325319.1| predicted protein [Populus trichocarpa] gi|224145735|ref|XP_002325747.1| predicted protein [Populus trichocarpa] gi|224145746|ref|XP_002325751.1| predicted protein [Populus trichocarpa] gi|118482658|gb|ABK93248.1| unknown [Populus trichocarpa] gi|222862194|gb|EEE99700.1| predicted protein [Populus trichocarpa] gi|222862622|gb|EEF00129.1| predicted protein [Populus trichocarpa] gi|222862626|gb|EEF00133.1| predicted protein [Populus trichocarpa]

 Score =  318 bits (814), Expect = 6e-85,   Method: Compositional matrix adjust.
 Identities = 146/173 (84%), Positives = 161/173 (93%)

Query: 1   MTNPRVFFDILIGKMNKGRVVMELFADVTPKTAENFRALCTGEKGIGMSGKPLHYKGSTF 60
           M+NP+VFFDILIGKM  GR+VMELFAD TPKTAENFRALCTGEKGIG +GKPLHYKGSTF
Sbjct: 1   MSNPKVFFDILIGKMKAGRIVMELFADATPKTAENFRALCTGEKGIGNAGKPLHYKGSTF 60

Query: 61  HRIIPNFMCQGGDFTRGNGTGGESIYGMKFADENFKMKHTGPGILSMANAGPNTNGSQFF 120
           HRIIPNFMCQGGDFTRGNGTGGESIYG KFADENFK+KHTGPG+LSMAN+GPNTNGSQFF
Sbjct: 61  HRIIPNFMCQGGDFTRGNGTGGESIYGAKFADENFKLKHTGPGVLSMANSGPNTNGSQFF 120

Query: 121 ICTQKTPWLDGKHVVFGKVVDGYSVIKDMEKVGSESGRTSQTVVIEDCGQLAE 173
           ICT+ T WLDGKHVVFGKVVDGY V+++MEKVGS SG T +TV++EDCGQ+ E
Sbjct: 121 ICTENTSWLDGKHVVFGKVVDGYGVVQEMEKVGSNSGTTKETVIVEDCGQIIE 173

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388512671|gb|AFK44397.1| unknown [Lotus japonicus]

 Score =  313 bits (803), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 148/173 (85%), Positives = 159/173 (91%)

Query: 1   MTNPRVFFDILIGKMNKGRVVMELFADVTPKTAENFRALCTGEKGIGMSGKPLHYKGSTF 60
           MTNP+VFFDI IGK   GR++MELFADVTPKTAENFRALCTGEKGIG SGK LH+KGS F
Sbjct: 1   MTNPKVFFDIAIGKTKAGRILMELFADVTPKTAENFRALCTGEKGIGKSGKGLHFKGSAF 60

Query: 61  HRIIPNFMCQGGDFTRGNGTGGESIYGMKFADENFKMKHTGPGILSMANAGPNTNGSQFF 120
           HRIIP+FMCQGGDFTRGNGTGGESIYG KFADENFK+KHTGPGILSMANAGPNTNGSQFF
Sbjct: 61  HRIIPDFMCQGGDFTRGNGTGGESIYGAKFADENFKLKHTGPGILSMANAGPNTNGSQFF 120

Query: 121 ICTQKTPWLDGKHVVFGKVVDGYSVIKDMEKVGSESGRTSQTVVIEDCGQLAE 173
           ICT KTPWLDGKHVVFGKVVDGY+V+K+MEKVGS  G TS+ VVIEDCGQ+ E
Sbjct: 121 ICTAKTPWLDGKHVVFGKVVDGYNVVKEMEKVGSGGGSTSEKVVIEDCGQIVE 173

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351726417|ref|NP_001236358.1| uncharacterized protein LOC100306275 [Glycine max] gi|255628075|gb|ACU14382.1| unknown [Glycine max]

 Score =  313 bits (801), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 148/172 (86%), Positives = 157/172 (91%)

Query: 3   NPRVFFDILIGKMNKGRVVMELFADVTPKTAENFRALCTGEKGIGMSGKPLHYKGSTFHR 62
           NP+VFFDILIGKM  GRVVMELFAD TPKTAENFR LCTGEKGIG SGKPLHYKGS FHR
Sbjct: 4   NPKVFFDILIGKMKAGRVVMELFADATPKTAENFRVLCTGEKGIGRSGKPLHYKGSVFHR 63

Query: 63  IIPNFMCQGGDFTRGNGTGGESIYGMKFADENFKMKHTGPGILSMANAGPNTNGSQFFIC 122
           IIP FMCQGGDFTRGNGTGGESIYG KF DENF ++HTGPGILSMANAG +TNGSQFFIC
Sbjct: 64  IIPEFMCQGGDFTRGNGTGGESIYGSKFEDENFNLRHTGPGILSMANAGAHTNGSQFFIC 123

Query: 123 TQKTPWLDGKHVVFGKVVDGYSVIKDMEKVGSESGRTSQTVVIEDCGQLAEK 174
           T KTPWLDGKHVVFGKVVDGYSV+++MEKVGS SGRTS+ VVIEDCGQ+ EK
Sbjct: 124 TTKTPWLDGKHVVFGKVVDGYSVVQEMEKVGSGSGRTSEPVVIEDCGQIVEK 175

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356506001|ref|XP_003521777.1| PREDICTED: peptidyl-prolyl cis-trans isomerase CYP19-3-like [Glycine max]

 Score =  311 bits (798), Expect = 5e-83,   Method: Compositional matrix adjust.
 Identities = 147/172 (85%), Positives = 157/172 (91%)

Query: 3   NPRVFFDILIGKMNKGRVVMELFADVTPKTAENFRALCTGEKGIGMSGKPLHYKGSTFHR 62
           NP+VFFDILIGKM  GRVVMELF D TPKTAENFRALCTGE GIG SGKPLHYKGS FHR
Sbjct: 4   NPKVFFDILIGKMKAGRVVMELFVDATPKTAENFRALCTGEMGIGKSGKPLHYKGSAFHR 63

Query: 63  IIPNFMCQGGDFTRGNGTGGESIYGMKFADENFKMKHTGPGILSMANAGPNTNGSQFFIC 122
           IIP FMCQGGDFT+GNGTGGESIYG KF DENF ++HTGPGILSMANAGP+TNGSQFFIC
Sbjct: 64  IIPEFMCQGGDFTKGNGTGGESIYGSKFNDENFNLRHTGPGILSMANAGPHTNGSQFFIC 123

Query: 123 TQKTPWLDGKHVVFGKVVDGYSVIKDMEKVGSESGRTSQTVVIEDCGQLAEK 174
           T KTPWLDGKHVVFGKVVDGYSV+++MEKVGS SGRTS+ VVIEDCGQ+ EK
Sbjct: 124 TAKTPWLDGKHVVFGKVVDGYSVVEEMEKVGSGSGRTSEPVVIEDCGQIVEK 175

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|55247974|gb|AAV48823.1| cyclophilin 1 [Codonopsis lanceolata]

 Score =  311 bits (797), Expect = 5e-83,   Method: Compositional matrix adjust.
 Identities = 146/173 (84%), Positives = 159/173 (91%)

Query: 1   MTNPRVFFDILIGKMNKGRVVMELFADVTPKTAENFRALCTGEKGIGMSGKPLHYKGSTF 60
           M+NP+VFFDI+IGKM  GR+VMELFAD TPKTAENFRALCTGEKGIG+SGKPLHYKGS F
Sbjct: 1   MSNPKVFFDIVIGKMKAGRIVMELFADSTPKTAENFRALCTGEKGIGLSGKPLHYKGSIF 60

Query: 61  HRIIPNFMCQGGDFTRGNGTGGESIYGMKFADENFKMKHTGPGILSMANAGPNTNGSQFF 120
           HRIIPNFMCQGGDFTR NGTGGESIYG KFADENFK KHTGPGILSMAN+GPNTNGSQFF
Sbjct: 61  HRIIPNFMCQGGDFTRFNGTGGESIYGAKFADENFKNKHTGPGILSMANSGPNTNGSQFF 120

Query: 121 ICTQKTPWLDGKHVVFGKVVDGYSVIKDMEKVGSESGRTSQTVVIEDCGQLAE 173
           ICT+KT WLDGKHVVFGKVVDGYSV+K+MEKVGS+ G +  TV IE+CGQ+ E
Sbjct: 121 ICTEKTSWLDGKHVVFGKVVDGYSVVKEMEKVGSDGGNSKSTVEIEECGQIQE 173

Source: Codonopsis lanceolata

Species: Codonopsis lanceolata

Genus: Codonopsis

Family: Campanulaceae

Order: Asterales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	174
TAIR|locus:2078451	176	ROC2 "rotamase cyclophilin 2"	0.982	0.971	0.760	3.8e-69
TAIR|locus:2045076	173	ROC3 "rotamase CYP 3" [Arabido	0.982	0.988	0.701	9.4e-66
TAIR|locus:2047097	174	AT2G21130 [Arabidopsis thalian	0.982	0.982	0.672	1.4e-62
TAIR|locus:2116880	172	ROC5 "rotamase cyclophilin 5"	0.988	1.0	0.686	6.2e-62
TAIR|locus:2141747	172	ROC1 "rotamase CYP 1" [Arabido	0.988	1.0	0.668	1.6e-61
DICTYBASE|DDB_G0282359	179	ppiA "cyclophilin-type peptidy	0.971	0.944	0.686	6.4e-60
WB|WBGene00000879	173	cyn-3 [Caenorhabditis elegans	0.982	0.988	0.672	1.3e-59
UNIPROTKB|P52011	173	cyn-3 "Peptidyl-prolyl cis-tra	0.982	0.988	0.672	1.3e-59
WB|WBGene00000883	171	cyn-7 [Caenorhabditis elegans	0.982	1.0	0.660	2.7e-59
WB|WBGene00000877	192	cyn-1 [Caenorhabditis elegans	0.965	0.875	0.678	4.5e-59

TAIR|locus:2078451 ROC2 "rotamase cyclophilin 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 701 (251.8 bits), Expect = 3.8e-69, P = 3.8e-69
 Identities = 130/171 (76%), Positives = 141/171 (82%)

Query:     1 MTNPRVFFDILIGKMNKGRVVMELFADVTPKTAENFRALCTGEKGIGMSGKPLHYKGSTF 60
             M NP+VFFDILIGKM  GRVVMELFADVTP+TA NFRALCTGE GIG +GK LHYKGS F
Sbjct:     1 MANPKVFFDILIGKMKAGRVVMELFADVTPRTANNFRALCTGENGIGKAGKALHYKGSAF 60

Query:    61 HRIIPNFMCQXXXXXXXXXXXXESIYGMKFADENFKMKHTGPGILSMANAGPNTNGSQFF 120
             HRIIP FMCQ            ESIYG KF DENFK+KHTGPGILSMAN+GPNTNGSQFF
Sbjct:    61 HRIIPGFMCQGGDFTRGNGTGGESIYGSKFEDENFKLKHTGPGILSMANSGPNTNGSQFF 120

Query:   121 ICTQKTPWLDGKHVVFGKVVDGYSVIKDMEKVGSESGRTSQTVVIEDCGQL 171
             ICT+KT WLDGKHVVFGKVVDGY+V+K ME VGS+ G  S+ VVIEDCG+L
Sbjct:   121 ICTEKTSWLDGKHVVFGKVVDGYNVVKAMEDVGSDMGNPSERVVIEDCGEL 171

GO:0003755 "peptidyl-prolyl cis-trans isomerase activity" evidence=IEA;ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0006457 "protein folding" evidence=IEA;ISS

GO:0046686 "response to cadmium ion" evidence=IEP

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0001510 "RNA methylation" evidence=RCA

GO:0006364 "rRNA processing" evidence=RCA

GO:0005739 "mitochondrion" evidence=IDA

GO:0005829 "cytosol" evidence=ISS

GO:0007165 "signal transduction" evidence=ISS

GO:0016018 "cyclosporin A binding" evidence=ISS

TAIR|locus:2045076 ROC3 "rotamase CYP 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 669 (240.6 bits), Expect = 9.4e-66, P = 9.4e-66
 Identities = 120/171 (70%), Positives = 142/171 (83%)

Query:     2 TNPRVFFDILIGKMNKGRVVMELFADVTPKTAENFRALCTGEKGIGMSGKPLHYKGSTFH 61
             TNP+V+FD+ +G  + GR+VMEL+AD TP+TAENFRALCTGE+GIG  GKPLHYKGS+FH
Sbjct:     3 TNPKVYFDMTVGGKSAGRIVMELYADTTPETAENFRALCTGERGIGKQGKPLHYKGSSFH 62

Query:    62 RIIPNFMCQXXXXXXXXXXXXESIYGMKFADENFKMKHTGPGILSMANAGPNTNGSQFFI 121
             R+IP FMCQ            ESIYG KF DENF  KHTGPGILSMANAG NTNGSQFFI
Sbjct:    63 RVIPKFMCQGGDFTAGNGTGGESIYGSKFKDENFIKKHTGPGILSMANAGANTNGSQFFI 122

Query:   122 CTQKTPWLDGKHVVFGKVVDGYSVIKDMEKVGSESGRTSQTVVIEDCGQLA 172
             CT+KT WLDGKHVVFG+VV+G +V++D+EKVGS+SGRTS+ VVI DCGQ++
Sbjct:   123 CTEKTSWLDGKHVVFGQVVEGLNVVRDIEKVGSDSGRTSKPVVIADCGQIS 173

GO:0003755 "peptidyl-prolyl cis-trans isomerase activity" evidence=IEA;ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0006457 "protein folding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=IDA

GO:0009507 "chloroplast" evidence=IDA

GO:0005829 "cytosol" evidence=ISS;IDA

GO:0009506 "plasmodesma" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0007165 "signal transduction" evidence=ISS

TAIR|locus:2047097 AT2G21130 [Arabidopsis thaliana (taxid:3702)]

 Score = 639 (230.0 bits), Expect = 1.4e-62, P = 1.4e-62
 Identities = 115/171 (67%), Positives = 138/171 (80%)

Query:     2 TNPRVFFDILIGKMNKGRVVMELFADVTPKTAENFRALCTGEKGIGMSGKPLHYKGSTFH 61
             ++P+VFFD+ IG    G++VMEL+ D TPKTAENFRALCTGEKG+G SGKPLH+KGS+FH
Sbjct:     3 SHPKVFFDMTIGGAPAGKIVMELYTDKTPKTAENFRALCTGEKGVGRSGKPLHFKGSSFH 62

Query:    62 RIIPNFMCQXXXXXXXXXXXXESIYGMKFADENFKMKHTGPGILSMANAGPNTNGSQFFI 121
             R+IPNFMCQ            ESIYG KF DENF+ KHTGPGILSMANAG NTNGSQFFI
Sbjct:    63 RVIPNFMCQGGDFTKGNGTGGESIYGAKFEDENFERKHTGPGILSMANAGANTNGSQFFI 122

Query:   122 CTQKTPWLDGKHVVFGKVVDGYSVIKDMEKVGSESGRTSQTVVIEDCGQLA 172
             CT KT WLDGKHVVFG+VV+G  V+K +EK+GS SG+ ++ VVI DCG+++
Sbjct:   123 CTVKTDWLDGKHVVFGQVVEGLDVVKAIEKIGSSSGKPTKPVVIADCGEIS 173

GO:0003755 "peptidyl-prolyl cis-trans isomerase activity" evidence=IEA;ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0006457 "protein folding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0007623 "circadian rhythm" evidence=RCA

GO:0009409 "response to cold" evidence=RCA

GO:0009414 "response to water deprivation" evidence=RCA

GO:0009737 "response to abscisic acid stimulus" evidence=RCA

TAIR|locus:2116880 ROC5 "rotamase cyclophilin 5" [Arabidopsis thaliana (taxid:3702)]

 Score = 633 (227.9 bits), Expect = 6.2e-62, P = 6.2e-62
 Identities = 118/172 (68%), Positives = 133/172 (77%)

Query:     1 MTNPRVFFDILIGKMNKGRVVMELFADVTPKTAENFRALCTGEKGIGMSGKPLHYKGSTF 60
             M+NPRVFFD+ +     GR+ MELFAD TP TAENFRALCTGEKG+G  GKPLH+KGS F
Sbjct:     1 MSNPRVFFDMSLSGTPIGRIEMELFADTTPNTAENFRALCTGEKGMGKLGKPLHFKGSIF 60

Query:    61 HRIIPNFMCQXXXXXXXXXXXXESIYGMKFADENFKMKHTGPGILSMANAGPNTNGSQFF 120
             HR+IP FMCQ            ESIYG KF DENF  KHTG GILSMAN+GPNTNGSQFF
Sbjct:    61 HRVIPGFMCQGGDFTAKNGTGGESIYGAKFKDENFIKKHTGAGILSMANSGPNTNGSQFF 120

Query:   121 ICTQKTPWLDGKHVVFGKVVDGYSVIKDMEKVGSESGRTSQTVVIEDCGQLA 172
             ICT KT WLDGKHVVFG+VV G  V+K +EKVGS+SG+TS+ V I DCGQL+
Sbjct:   121 ICTDKTSWLDGKHVVFGQVVKGLDVVKAIEKVGSDSGKTSKVVTITDCGQLS 172

GO:0003755 "peptidyl-prolyl cis-trans isomerase activity" evidence=IEA;ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0006457 "protein folding" evidence=IEA;ISS

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0009507 "chloroplast" evidence=IDA

GO:0048046 "apoplast" evidence=IDA

GO:0005829 "cytosol" evidence=ISS;IDA

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0006094 "gluconeogenesis" evidence=RCA

GO:0006096 "glycolysis" evidence=RCA

GO:0009651 "response to salt stress" evidence=RCA

GO:0046686 "response to cadmium ion" evidence=RCA

GO:0007165 "signal transduction" evidence=ISS

TAIR|locus:2141747 ROC1 "rotamase CYP 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 629 (226.5 bits), Expect = 1.6e-61, P = 1.6e-61
 Identities = 115/172 (66%), Positives = 135/172 (78%)

Query:     1 MTNPRVFFDILIGKMNKGRVVMELFADVTPKTAENFRALCTGEKGIGMSGKPLHYKGSTF 60
             M  P+V+FD+ I     GR+VMEL+ D TP+TAENFRALCTGEKG+G +GKPLH+KGS F
Sbjct:     1 MAFPKVYFDMTIDGQPAGRIVMELYTDKTPRTAENFRALCTGEKGVGGTGKPLHFKGSKF 60

Query:    61 HRIIPNFMCQXXXXXXXXXXXXESIYGMKFADENFKMKHTGPGILSMANAGPNTNGSQFF 120
             HR+IPNFMCQ            ESIYG KF DENF+ KHTGPGILSMANAG NTNGSQFF
Sbjct:    61 HRVIPNFMCQGGDFTAGNGTGGESIYGSKFEDENFERKHTGPGILSMANAGANTNGSQFF 120

Query:   121 ICTQKTPWLDGKHVVFGKVVDGYSVIKDMEKVGSESGRTSQTVVIEDCGQLA 172
             ICT KT WLDGKHVVFG+VV+G  V+K +EKVGS SG+ ++ VV+ DCGQL+
Sbjct:   121 ICTVKTDWLDGKHVVFGQVVEGLDVVKAIEKVGSSSGKPTKPVVVADCGQLS 172

GO:0003755 "peptidyl-prolyl cis-trans isomerase activity" evidence=IEA;ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0006457 "protein folding" evidence=ISS

GO:0046686 "response to cadmium ion" evidence=IEP

GO:0005886 "plasma membrane" evidence=IDA

GO:0048046 "apoplast" evidence=IDA

GO:0005829 "cytosol" evidence=ISS;IDA

GO:0001932 "regulation of protein phosphorylation" evidence=IMP

GO:0009416 "response to light stimulus" evidence=IEP

GO:0009585 "red, far-red light phototransduction" evidence=IGI

GO:0009704 "de-etiolation" evidence=IMP

GO:0009742 "brassinosteroid mediated signaling pathway" evidence=IGI

GO:0009785 "blue light signaling pathway" evidence=IGI

GO:0019344 "cysteine biosynthetic process" evidence=RCA

GO:0007165 "signal transduction" evidence=ISS

DICTYBASE|DDB_G0282359 ppiA "cyclophilin-type peptidylprolyl cis-trans isomerase (PPIase)" [Dictyostelium discoideum (taxid:44689)]

 Score = 614 (221.2 bits), Expect = 6.4e-60, P = 6.4e-60
 Identities = 116/169 (68%), Positives = 130/169 (76%)

Query:     3 NPRVFFDILIGKMNKGRVVMELFADVTPKTAENFRALCTGEKGIGMSGKPLHYKGSTFHR 62
             NPRVFFDI IG +  G+VVMEL+A+  PKTAENFRALCTGEKGIG SGKPL YKGS+FHR
Sbjct:    11 NPRVFFDITIGGVEAGKVVMELYANTVPKTAENFRALCTGEKGIGKSGKPLSYKGSSFHR 70

Query:    63 IIPNFMCQXXXXXXXXXXXXESIYGMKFADENFKMKHTGPGILSMANAGPNTNGSQFFIC 122
             +I NFMCQ            ESIYG KFADENFK+KH G G LSMANAG NTNGSQFFIC
Sbjct:    71 VITNFMCQGGDFTMGNGTGGESIYGNKFADENFKLKHFGQGTLSMANAGANTNGSQFFIC 130

Query:   123 TQKTPWLDGKHVVFGKVVDGYSVIKDMEKVGSESGRTSQTVVIEDCGQL 171
                T WLDGKHVVFG V +G  V+K ME  GS+SG+T++ VVI +CGQL
Sbjct:   131 VAPTDWLDGKHVVFGFVTEGMDVVKKMEAAGSQSGKTTKPVVIANCGQL 179

GO:0030587 "sorocarp development" evidence=IMP

GO:0006457 "protein folding" evidence=IEA;ISS

GO:0003755 "peptidyl-prolyl cis-trans isomerase activity" evidence=IEA;ISS

GO:0000413 "protein peptidyl-prolyl isomerization" evidence=IEA;ISS

GO:0042277 "peptide binding" evidence=IEA

GO:0016853 "isomerase activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0044351 "macropinocytosis" evidence=RCA

WB|WBGene00000879 cyn-3 [Caenorhabditis elegans (taxid:6239)]

 Score = 611 (220.1 bits), Expect = 1.3e-59, P = 1.3e-59
 Identities = 115/171 (67%), Positives = 130/171 (76%)

Query:     1 MTNPRVFFDILIGKMNKGRVVMELFADVTPKTAENFRALCTGEKGIGMSGKPLHYKGSTF 60
             M+  +VFFDI IG    GR+VMEL+ DV PKTA NFRALCTGE GIG SGKPLH+KGS F
Sbjct:     1 MSRSKVFFDITIGGKASGRIVMELYDDVVPKTAGNFRALCTGENGIGKSGKPLHFKGSKF 60

Query:    61 HRIIPNFMCQXXXXXXXXXXXXESIYGMKFADENFKMKHTGPGILSMANAGPNTNGSQFF 120
             HRIIPNFM Q            ESIYG KF DENFK KHTGPG+LSMANAGPNTNGSQFF
Sbjct:    61 HRIIPNFMIQGGDFTRGNGTGGESIYGEKFPDENFKEKHTGPGVLSMANAGPNTNGSQFF 120

Query:   121 ICTQKTPWLDGKHVVFGKVVDGYSVIKDMEKVGSESGRTSQTVVIEDCGQL 171
             +CT KT WLDGKHVVFG+VV+G  V+K +E  GS+SG+  +  +I DCGQL
Sbjct:   121 LCTVKTEWLDGKHVVFGRVVEGLDVVKAVESNGSQSGKPVKDCMIADCGQL 171

GO:0003755 "peptidyl-prolyl cis-trans isomerase activity" evidence=IEA;IDA

GO:0006457 "protein folding" evidence=IEA;ISS

GO:0005623 "cell" evidence=IDA

GO:0000413 "protein peptidyl-prolyl isomerization" evidence=IDA

UNIPROTKB|P52011 cyn-3 "Peptidyl-prolyl cis-trans isomerase 3" [Caenorhabditis elegans (taxid:6239)]

 Score = 611 (220.1 bits), Expect = 1.3e-59, P = 1.3e-59
 Identities = 115/171 (67%), Positives = 130/171 (76%)

Query:     1 MTNPRVFFDILIGKMNKGRVVMELFADVTPKTAENFRALCTGEKGIGMSGKPLHYKGSTF 60
             M+  +VFFDI IG    GR+VMEL+ DV PKTA NFRALCTGE GIG SGKPLH+KGS F
Sbjct:     1 MSRSKVFFDITIGGKASGRIVMELYDDVVPKTAGNFRALCTGENGIGKSGKPLHFKGSKF 60

Query:    61 HRIIPNFMCQXXXXXXXXXXXXESIYGMKFADENFKMKHTGPGILSMANAGPNTNGSQFF 120
             HRIIPNFM Q            ESIYG KF DENFK KHTGPG+LSMANAGPNTNGSQFF
Sbjct:    61 HRIIPNFMIQGGDFTRGNGTGGESIYGEKFPDENFKEKHTGPGVLSMANAGPNTNGSQFF 120

Query:   121 ICTQKTPWLDGKHVVFGKVVDGYSVIKDMEKVGSESGRTSQTVVIEDCGQL 171
             +CT KT WLDGKHVVFG+VV+G  V+K +E  GS+SG+  +  +I DCGQL
Sbjct:   121 LCTVKTEWLDGKHVVFGRVVEGLDVVKAVESNGSQSGKPVKDCMIADCGQL 171

GO:0005515 "protein binding" evidence=IPI

WB|WBGene00000883 cyn-7 [Caenorhabditis elegans (taxid:6239)]

 Score = 608 (219.1 bits), Expect = 2.7e-59, P = 2.7e-59
 Identities = 113/171 (66%), Positives = 127/171 (74%)

Query:     1 MTNPRVFFDILIGKMNKGRVVMELFADVTPKTAENFRALCTGEKGIGMSGKPLHYKGSTF 60
             M+ PRVFFDI I     GR+VMEL+ D+ PKTAENFRALCTGEKG+G SGKPLH+KGS F
Sbjct:     1 MSRPRVFFDITIAGKPTGRIVMELYNDIVPKTAENFRALCTGEKGVGKSGKPLHFKGSKF 60

Query:    61 HRIIPNFMCQXXXXXXXXXXXXESIYGMKFADENFKMKHTGPGILSMANAGPNTNGSQFF 120
             HRIIP FM Q            ESIYG KF DENFK KHTGPG+LSMANAGPNTNGSQFF
Sbjct:    61 HRIIPEFMIQGGDFTRGNGTGGESIYGEKFPDENFKEKHTGPGVLSMANAGPNTNGSQFF 120

Query:   121 ICTQKTPWLDGKHVVFGKVVDGYSVIKDMEKVGSESGRTSQTVVIEDCGQL 171
             +CT KT WLDGKHVVFG+VV+G  ++  +E  GS SG      +I DCGQL
Sbjct:   121 LCTVKTAWLDGKHVVFGRVVEGLDIVSKVEGNGSSSGTPKSECLIADCGQL 171

GO:0003755 "peptidyl-prolyl cis-trans isomerase activity" evidence=IEA

GO:0006457 "protein folding" evidence=IEA

GO:0009792 "embryo development ending in birth or egg hatching" evidence=IMP

WB|WBGene00000877 cyn-1 [Caenorhabditis elegans (taxid:6239)]

 Score = 606 (218.4 bits), Expect = 4.5e-59, P = 4.5e-59
 Identities = 114/168 (67%), Positives = 127/168 (75%)

Query:     4 PRVFFDILIGKMNKGRVVMELFADVTPKTAENFRALCTGEKGIGMSGKPLHYKGSTFHRI 63
             P+VFFD+ IG+   GRV MELF DV PKTAENFRALCTGEKG+G  G  LH+KGS FHRI
Sbjct:    22 PKVFFDVSIGEEPAGRVTMELFNDVVPKTAENFRALCTGEKGVGEQGVALHFKGSKFHRI 81

Query:    64 IPNFMCQXXXXXXXXXXXXESIYGMKFADENFKMKHTGPGILSMANAGPNTNGSQFFICT 123
             IP FM Q            ESIYG KF DENF +KHTGPG LSMANAGPNTNGSQFFICT
Sbjct:    82 IPEFMIQGGDFTRHNGTGGESIYGNKFKDENFDLKHTGPGCLSMANAGPNTNGSQFFICT 141

Query:   124 QKTPWLDGKHVVFGKVVDGYSVIKDMEKVGSESGRTSQTVVIEDCGQL 171
               TPWLDG HVVFG+V DG SV+K +EK+GS SG  ++TV I DCG+L
Sbjct:   142 VDTPWLDGGHVVFGQVTDGMSVVKKIEKMGSRSGAPAKTVTIADCGEL 189

GO:0003755 "peptidyl-prolyl cis-trans isomerase activity" evidence=IEA

GO:0006457 "protein folding" evidence=IEA

GO:0005739 "mitochondrion" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q0ZQL1	PPIA_PANTR	5, ., 2, ., 1, ., 8	0.7076	0.9425	0.9939	yes	no
Q39613	CYPH_CATRO	5, ., 2, ., 1, ., 8	0.7906	0.9885	1.0	N/A	no
Q0ZQK3	PPIA_SAGOE	5, ., 2, ., 1, ., 8	0.7076	0.9425	1.0	N/A	no
P52009	CYP1_CAEEL	5, ., 2, ., 1, ., 8	0.7440	0.9655	0.875	no	no
P14851	PPIA_CRIGR	5, ., 2, ., 1, ., 8	0.7076	0.9425	1.0	yes	no
P0C1I7	CYP5_RHIO9	5, ., 2, ., 1, ., 8	0.6666	0.9655	0.9545	N/A	no
P54985	PPIA_BLAGE	5, ., 2, ., 1, ., 8	0.6725	0.9425	1.0	N/A	no
P62938	PPIA_CHLAE	5, ., 2, ., 1, ., 8	0.7076	0.9425	0.9939	N/A	no
P62936	PPIA_PIG	5, ., 2, ., 1, ., 8	0.7017	0.9425	1.0	no	no
P62937	PPIA_HUMAN	5, ., 2, ., 1, ., 8	0.7076	0.9425	0.9939	yes	no
P62935	PPIA_BOVIN	5, ., 2, ., 1, ., 8	0.7017	0.9425	1.0	yes	no
P34790	CP18C_ARATH	5, ., 2, ., 1, ., 8	0.7325	0.9885	1.0	no	no
Q38867	CP19C_ARATH	5, ., 2, ., 1, ., 8	0.8304	0.9827	0.9715	yes	no
O49886	CYPH_LUPLU	5, ., 2, ., 1, ., 8	0.7674	0.9885	1.0	N/A	no
Q0ZQL2	PPIA_PANPA	5, ., 2, ., 1, ., 8	0.7076	0.9425	0.9939	N/A	no
Q0ZQL0	PPIA_GORGO	5, ., 2, ., 1, ., 8	0.7076	0.9425	0.9939	N/A	no
P17742	PPIA_MOUSE	5, ., 2, ., 1, ., 8	0.7076	0.9425	1.0	yes	no
P21568	CYPH_SOLLC	5, ., 2, ., 1, ., 8	0.7953	0.9827	1.0	N/A	no
P21569	CYPH_MAIZE	5, ., 2, ., 1, ., 8	0.7383	0.9885	1.0	N/A	no
Q38900	CP19A_ARATH	5, ., 2, ., 1, ., 8	0.7660	0.9827	0.9884	no	no
Q5R8S7	PPIA_PONPY	5, ., 2, ., 1, ., 8	0.7076	0.9425	0.9939	N/A	no
Q8HXS3	PPIA_FELCA	5, ., 2, ., 1, ., 8	0.6900	0.9425	1.0	N/A	no
Q9SKQ0	CP19B_ARATH	5, ., 2, ., 1, ., 8	0.7368	0.9827	0.9827	no	no
P62941	PPIA_PAPAN	5, ., 2, ., 1, ., 8	0.7076	0.9425	0.9939	N/A	no
P62940	PPIA_MACMU	5, ., 2, ., 1, ., 8	0.7076	0.9425	0.9939	yes	no
P34887	CYPH_ALLCE	5, ., 2, ., 1, ., 8	0.7682	0.8620	1.0	N/A	no
P91791	PPIA_HEMPU	5, ., 2, ., 1, ., 8	0.7076	0.9425	1.0	N/A	no
P73789	PPI2_SYNY3	5, ., 2, ., 1, ., 8	0.7065	0.9597	0.9766	N/A	no
P52011	CYP3_CAEEL	5, ., 2, ., 1, ., 8	0.7426	0.9827	0.9884	yes	no
Q8W171	CYP1_SOYBN	5, ., 2, ., 1, ., 8	0.7941	0.9770	0.9883	no	no
P52015	CYP7_CAEEL	5, ., 2, ., 1, ., 8	0.7309	0.9827	1.0	no	no
P24525	CYPH_BRANA	5, ., 2, ., 1, ., 8	0.7660	0.9827	1.0	N/A	no
Q6DTV9	PPIA_AOTTR	5, ., 2, ., 1, ., 8	0.7076	0.9425	1.0	N/A	no
Q9TTC6	PPIA_RABIT	5, ., 2, ., 1, ., 8	0.7076	0.9425	1.0	yes	no
Q0ZQK7	PPIA_NOMLE	5, ., 2, ., 1, ., 8	0.7076	0.9425	0.9939	yes	no
Q42406	CP18D_ARATH	5, ., 2, ., 1, ., 8	0.7441	0.9885	1.0	no	no
Q0ZQK8	PPIA_HYLLA	5, ., 2, ., 1, ., 8	0.7076	0.9425	0.9939	N/A	no
P10111	PPIA_RAT	5, ., 2, ., 1, ., 8	0.7134	0.9425	1.0	yes	no
Q0ZQK6	PPIA_HYLSY	5, ., 2, ., 1, ., 8	0.7076	0.9425	0.9939	N/A	no
Q54SM3	PPIA_DICDI	5, ., 2, ., 1, ., 8	0.7514	0.9712	0.9441	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	5.2.1	0.998
4th Layer	5.2.1.8	0.994

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	174
cd01926	164	cd01926, cyclophilin_ABH_like, cyclophilin_ABH_lik	1e-114
PTZ00060	183	PTZ00060, PTZ00060, cyclophilin; Provisional	1e-102
PLN03149	186	PLN03149, PLN03149, peptidyl-prolyl isomerase H (c	1e-73
cd00317	146	cd00317, cyclophilin, cyclophilin: cyclophilin-typ	4e-63
COG0652	158	COG0652, PpiB, Peptidyl-prolyl cis-trans isomerase	2e-61
pfam00160	144	pfam00160, Pro_isomerase, Cyclophilin type peptidy	5e-59
cd01923	159	cd01923, cyclophilin_RING, cyclophilin_RING: cyclo	3e-50
cd01927	148	cd01927, cyclophilin_WD40, cyclophilin_WD40: cyclo	8e-48
cd01922	146	cd01922, cyclophilin_SpCYP2_like, cyclophilin_SpCY	3e-47
cd01928	153	cd01928, Cyclophilin_PPIL3_like, Cyclophilin_PPIL3	9e-47
cd01925	171	cd01925, cyclophilin_CeCYP16-like, cyclophilin_CeC	3e-38
PTZ00221	249	PTZ00221, PTZ00221, cyclophilin; Provisional	2e-35
cd01921	166	cd01921, cyclophilin_RRM, cyclophilin_RRM: cycloph	6e-30
cd01920	155	cd01920, cyclophilin_EcCYP_like, cyclophilin_EcCYP	7e-18
PRK10903	190	PRK10903, PRK10903, peptidyl-prolyl cis-trans isom	3e-10
PRK10791	164	PRK10791, PRK10791, peptidyl-prolyl cis-trans isom	4e-10
cd01924	176	cd01924, cyclophilin_TLP40_like, cyclophilin_TLP40	5e-07

>gnl|CDD|238907 cd01926, cyclophilin_ABH_like, cyclophilin_ABH_like: Cyclophilin A, B and H-like cyclophilin-type peptidylprolyl cis- trans isomerase (PPIase) domain

 Score =  321 bits (826), Expect = e-114
 Identities = 128/166 (77%), Positives = 141/166 (84%), Gaps = 2/166 (1%)

Query: 4   PRVFFDILIGKMNKGRVVMELFADVTPKTAENFRALCTGEKGIGMSGKPLHYKGSTFHRI 63
           P+VFFDI IG    GR+VMELFADV PKTAENFRALCTGEKG G  GKP  YKGSTFHR+
Sbjct: 1   PKVFFDITIGGEPAGRIVMELFADVVPKTAENFRALCTGEKGKG--GKPFGYKGSTFHRV 58

Query: 64  IPNFMCQGGDFTRGNGTGGESIYGMKFADENFKMKHTGPGILSMANAGPNTNGSQFFICT 123
           IP+FM QGGDFTRGNGTGG+SIYG KF DENFK+KHTGPG+LSMANAGPNTNGSQFFI T
Sbjct: 59  IPDFMIQGGDFTRGNGTGGKSIYGEKFPDENFKLKHTGPGLLSMANAGPNTNGSQFFITT 118

Query: 124 QKTPWLDGKHVVFGKVVDGYSVIKDMEKVGSESGRTSQTVVIEDCG 169
            KTPWLDGKHVVFGKVV+G  V+K +E VGS +G+  + VVI DCG
Sbjct: 119 VKTPWLDGKHVVFGKVVEGMDVVKKIENVGSGNGKPKKKVVIADCG 164

This family represents the archetypal cystolic cyclophilin similar to human cyclophilins A, B and H. PPIase is an enzyme which accelerates protein folding by catalyzing the cis-trans isomerization of the peptide bonds preceding proline residues. These enzymes have been implicated in protein folding processes which depend on catalytic /chaperone-like activities. As cyclophilins, Human hCyP-A, human cyclophilin-B (hCyP-19), S. cerevisiae Cpr1 and C. elegans Cyp-3, are inhibited by the immunosuppressive drug cyclopsporin A (CsA). CsA binds to the PPIase active site. Cyp-3. S. cerevisiae Cpr1 interacts with the Rpd3 - Sin3 complex and in addition is a component of the Set3 complex. S. cerevisiae Cpr1 has also been shown to have a role in Zpr1p nuclear transport. Human cyclophilin H associates with the [U4/U6.U5] tri-snRNP particles of the splicesome. Length = 164

>gnl|CDD|240249 PTZ00060, PTZ00060, cyclophilin; Provisional

 Score =  290 bits (745), Expect = e-102
 Identities = 119/171 (69%), Positives = 135/171 (78%), Gaps = 1/171 (0%)

Query: 1   MTNPRVFFDILIGKMNKGRVVMELFADVTPKTAENFRALCTGEKGIGMSGKPLHYKGSTF 60
              P+VFFDI I     GR+V ELF+DVTPKTAENFRALC G+K +G SGK LHYKGS F
Sbjct: 13  SKRPKVFFDISIDNAPAGRIVFELFSDVTPKTAENFRALCIGDK-VGSSGKNLHYKGSIF 71

Query: 61  HRIIPNFMCQGGDFTRGNGTGGESIYGMKFADENFKMKHTGPGILSMANAGPNTNGSQFF 120
           HRIIP FMCQGGD T  NGTGGESIYG KF DENFK+KH  PG+LSMANAGPNTNGSQFF
Sbjct: 72  HRIIPQFMCQGGDITNHNGTGGESIYGRKFTDENFKLKHDQPGLLSMANAGPNTNGSQFF 131

Query: 121 ICTQKTPWLDGKHVVFGKVVDGYSVIKDMEKVGSESGRTSQTVVIEDCGQL 171
           I T   PWLDGKHVVFGKV++G  V++ MEK G++SG   + VV+ DCG+L
Sbjct: 132 ITTVPCPWLDGKHVVFGKVIEGMEVVRAMEKEGTQSGYPKKPVVVTDCGEL 182

Length = 183

>gnl|CDD|178694 PLN03149, PLN03149, peptidyl-prolyl isomerase H (cyclophilin H); Provisional

 Score =  218 bits (558), Expect = 1e-73
 Identities = 100/171 (58%), Positives = 121/171 (70%), Gaps = 4/171 (2%)

Query: 3   NPRVFFDILIGKMNKGRVVMELFADVTPKTAENFRALCTGEKGIGMSGKPLHYKGSTFHR 62
           NP VFFD+ IG +  GR+ MELFAD+ PKTAENFR  CTGE     +G P  YKG  FHR
Sbjct: 18  NPVVFFDVTIGGIPAGRIKMELFADIAPKTAENFRQFCTGE--FRKAGLPQGYKGCQFHR 75

Query: 63  IIPNFMCQGGDFTRGNGTGGESIYGMKFADENFKMKHTGPGILSMANAGPNTNGSQFFIC 122
           +I +FM QGGDF +G+GTG  SIYG KF DENF  KHTGPG+LSMAN+GPNTNG QFFI 
Sbjct: 76  VIKDFMIQGGDFLKGDGTGCVSIYGSKFEDENFIAKHTGPGLLSMANSGPNTNGCQFFIT 135

Query: 123 TQKTPWLDGKHVVFGKVV-DGYSVIKDMEKVGS-ESGRTSQTVVIEDCGQL 171
             K  WLD KHVVFG+V+ DG  V++ +E V +  + R     VI +CG++
Sbjct: 136 CAKCDWLDNKHVVFGRVLGDGLLVVRKIENVATGPNNRPKLACVISECGEM 186

Length = 186

>gnl|CDD|238194 cd00317, cyclophilin, cyclophilin: cyclophilin-type peptidylprolyl cis- trans isomerases

 Score =  190 bits (485), Expect = 4e-63
 Identities = 83/155 (53%), Positives = 96/155 (61%), Gaps = 14/155 (9%)

Query: 15  MNKGRVVMELFADVTPKTAENFRALCTGEKGIGMSGKPLHYKGSTFHRIIPNFMCQGGDF 74
             KGR+V+EL+ D  PKT ENF +L  G            Y G+TFHR+IP FM QGGD 
Sbjct: 4   TTKGRIVIELYGDEAPKTVENFLSLARGG----------FYDGTTFHRVIPGFMIQGGDP 53

Query: 75  TRGNGTGGESIYGMKFADENFKMK-HTGPGILSMANAGPNTNGSQFFICTQKTPWLDGKH 133
           T     GG S  G KF DENF +K H   G LSMANAGPNTNGSQFFI T  TP LDGKH
Sbjct: 54  T--GTGGGGSGPGYKFPDENFPLKYHHRRGTLSMANAGPNTNGSQFFITTAPTPHLDGKH 111

Query: 134 VVFGKVVDGYSVIKDMEKVG-SESGRTSQTVVIED 167
            VFGKVV+G  V+  +E+    E+GR  + V I D
Sbjct: 112 TVFGKVVEGMDVVDKIERGDTDENGRPIKPVTISD 146

This family contains eukaryotic, bacterial and archeal proteins which exhibit a peptidylprolyl cis- trans isomerases activity (PPIase, Rotamase) and in addition bind the immunosuppressive drug cyclosporin (CsA). Immunosuppression in vertebrates is believed to be the result of the cyclophilin A-cyclosporin protein drug complex binding to and inhibiting the protein-phosphatase calcineurin. PPIase is an enzyme which accelerates protein folding by catalyzing the cis-trans isomerization of the peptide bonds preceding proline residues. Cyclophilins are a diverse family in terms of function and have been implicated in protein folding processes which depend on catalytic /chaperone-like activities. This group contains human cyclophilin 40, a co-chaperone of the hsp90 chaperone system; human cyclophilin A, a chaperone in the HIV-1 infectious process and; human cyclophilin H, a component of the U4/U6 snRNP, whose isomerization or chaperoning activities may play a role in RNA splicing. . Length = 146

>gnl|CDD|223725 COG0652, PpiB, Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family [Posttranslational modification, protein turnover, chaperones]

 Score =  187 bits (476), Expect = 2e-61
 Identities = 68/161 (42%), Positives = 88/161 (54%), Gaps = 16/161 (9%)

Query: 10  ILIGKMNKGRVVMELFADVTPKTAENFRALCTGEKGIGMSGKPLHYKGSTFHRIIPNFMC 69
            +I + NKG + +EL+ D  PKT  NF  L           K   Y G+ FHR+IP FM 
Sbjct: 1   TVILETNKGDITIELYPDKAPKTVANFLQLV----------KEGFYDGTIFHRVIPGFMI 50

Query: 70  QGGDFTRGNGTGGESIYGMKFADENFKMKH--TGPGILSMANAG-PNTNGSQFFICTQKT 126
           QGGD T G+GTGG       F DENF +       G LSMA AG PN+NGSQFFI     
Sbjct: 51  QGGDPTGGDGTGGPGP---PFKDENFALNGDRHKRGTLSMARAGDPNSNGSQFFITVVDN 107

Query: 127 PWLDGKHVVFGKVVDGYSVIKDMEKVGSESGRTSQTVVIED 167
           P+LDGK+ VFG+VV+G  V+  ++   ++     Q V  + 
Sbjct: 108 PFLDGKYTVFGQVVEGMDVVDKIKNGDTDDSGYVQDVPADP 148

Length = 158

>gnl|CDD|215759 pfam00160, Pro_isomerase, Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD

 Score =  180 bits (459), Expect = 5e-59
 Identities = 72/162 (44%), Positives = 89/162 (54%), Gaps = 18/162 (11%)

Query: 7   FFDILIGKMNKGRVVMELFADVTPKTAENFRALCTGEKGIGMSGKPLHYKGSTFHRIIPN 66
           F DI     N GR+V+ELF D  PKT ENF +LC  +KG         Y G+ FHR+IP 
Sbjct: 1   FLDI---TTNLGRIVIELFGDEAPKTVENFLSLC--KKG--------FYDGTIFHRVIPG 47

Query: 67  FMCQGGDFTRGNGTGGESIYGMKFADENFKMKHTGPGILSMANAGPNTNGSQFFICTQKT 126
           FM QGGD T     G  SI      DE         G LSMA +GPN+ GSQFFI     
Sbjct: 48  FMIQGGDPTGPGTGGKRSI-----PDEFVSKLKHKRGTLSMARSGPNSAGSQFFITLGDA 102

Query: 127 PWLDGKHVVFGKVVDGYSVIKDMEKVGSESGRTSQTVVIEDC 168
           P LDG + VFG+VV+G  V++ +EKV ++  R  + V I  C
Sbjct: 103 PHLDGGYTVFGRVVEGMDVVEKIEKVETDGDRPLKDVKITSC 144

The peptidyl-prolyl cis-trans isomerases, also known as cyclophilins, share this domain of about 109 amino acids. Cyclophilins have been found in all organisms studied so far and catalyze peptidyl-prolyl isomerisation during which the peptide bond preceding proline (the peptidyl-prolyl bond) is stabilised in the cis conformation. Mammalian cyclophilin A (CypA) is a major cellular target for the immunosuppressive drug cyclosporin A (CsA). Other roles for cyclophilins may include chaperone and cell signalling function. Length = 144

>gnl|CDD|238904 cd01923, cyclophilin_RING, cyclophilin_RING: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) having a modified RING finger domain

 Score =  158 bits (401), Expect = 3e-50
 Identities = 77/154 (50%), Positives = 93/154 (60%), Gaps = 13/154 (8%)

Query: 16  NKGRVVMELFADVTPKTAENFRALCTGEKGIGMSGKPLHYKGSTFHRIIPNFMCQGGDFT 75
           NKG + +EL  D  PK  ENF  LC  +KG        +Y G+ FHR I NFM QGGD T
Sbjct: 7   NKGDLNLELHCDKAPKACENFIKLC--KKG--------YYDGTIFHRSIRNFMIQGGDPT 56

Query: 76  RGNGTGGESIYGMKFADE-NFKMKHTGPGILSMANAGPNTNGSQFFICTQKTPWLDGKHV 134
            G G GGESI+G  F DE    + H G G+LSMAN+GPNTNGSQFFI  +    LDGKH 
Sbjct: 57  -GTGRGGESIWGKPFKDEFKPNLSHDGRGVLSMANSGPNTNGSQFFITYRSCKHLDGKHT 115

Query: 135 VFGKVVDGYSVIKDMEKVGSE-SGRTSQTVVIED 167
           VFG+VV G   ++ ME V    + R  + + IED
Sbjct: 116 VFGRVVGGLETLEAMENVPDPGTDRPKEEIKIED 149

This group includes the nuclear proteins, Human hCyP-60 and Caenorhabditis elegans MOG-6 which, compared to the archetypal cyclophilin Human cyclophilin A exhibit reduced peptidylprolyl cis- trans isomerase activity and lack a residue important for cyclophilin binding. Human hCyP-60 has been shown to physically interact with the proteinase inhibitor peptide eglin c and; C. elegans MOG-6 to physically interact with MEP-1, a nuclear zinc finger protein. MOG-6 has been shown to function in germline sex determination. Length = 159

>gnl|CDD|238908 cd01927, cyclophilin_WD40, cyclophilin_WD40: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) having a WD40 domain

 Score =  152 bits (385), Expect = 8e-48
 Identities = 70/137 (51%), Positives = 86/137 (62%), Gaps = 12/137 (8%)

Query: 17  KGRVVMELFADVTPKTAENFRALCTGEKGIGMSGKPLHYKGSTFHRIIPNFMCQGGDFTR 76
           KG + + LF +  PKT ENF              +  +Y  + FHR+I  FM Q GD T 
Sbjct: 6   KGDIHIRLFPEEAPKTVENFTTHA----------RNGYYNNTIFHRVIKGFMIQTGDPT- 54

Query: 77  GNGTGGESIYGMKFADE-NFKMKHTGPGILSMANAGPNTNGSQFFICTQKTPWLDGKHVV 135
           G+GTGGESI+G +F DE +  +KH  P  LSMANAGPNTNGSQFFI T  TPWLD KH V
Sbjct: 55  GDGTGGESIWGKEFEDEFSPSLKHDRPYTLSMANAGPNTNGSQFFITTVATPWLDNKHTV 114

Query: 136 FGKVVDGYSVIKDMEKV 152
           FG+VV G  V++ +E V
Sbjct: 115 FGRVVKGMDVVQRIENV 131

This group consists of several hypothetical and putative eukaryotic and bacterial proteins which have a cyclophilin domain and a WD40 domain. Function of the protein is not known. Length = 148

>gnl|CDD|238903 cd01922, cyclophilin_SpCYP2_like, cyclophilin_SpCYP2_like: cyclophilin 2-like peptidylprolyl cis- trans isomerase (PPIase) domain similar to Schizosaccharomyces pombe cyp-2

 Score =  150 bits (381), Expect = 3e-47
 Identities = 75/144 (52%), Positives = 96/144 (66%), Gaps = 12/144 (8%)

Query: 16  NKGRVVMELFADVTPKTAENFRALCTGEKGIGMSGKPLHYKGSTFHRIIPNFMCQGGDFT 75
             G + +EL+ +  PKT +NF  L    +G        +Y G+ FHR+I +FM QGGD T
Sbjct: 5   TMGEITLELYWNHAPKTCKNFYELAK--RG--------YYNGTIFHRLIKDFMIQGGDPT 54

Query: 76  RGNGTGGESIYGMKFADE-NFKMKHTGPGILSMANAGPNTNGSQFFICTQKTPWLDGKHV 134
            G G GG SIYG KF DE + ++KHTG GILSMANAGPNTNGSQFFI    TPWLDGKH 
Sbjct: 55  -GTGRGGASIYGKKFEDEIHPELKHTGAGILSMANAGPNTNGSQFFITLAPTPWLDGKHT 113

Query: 135 VFGKVVDGYSVIKDMEKVGSESGR 158
           +FG+V  G  VI++M +V +++ R
Sbjct: 114 IFGRVSKGMKVIENMVEVQTQTDR 137

These proteins bind their respective SNW chromatin binding protein in autologous systems, in a CsA independent manner indicating interaction with a surface outside the PPIase active site. SNW proteins play a basic and broad range role in signaling. Length = 146

>gnl|CDD|238909 cd01928, Cyclophilin_PPIL3_like, Cyclophilin_PPIL3_like

 Score =  149 bits (378), Expect = 9e-47
 Identities = 76/154 (49%), Positives = 94/154 (61%), Gaps = 13/154 (8%)

Query: 16  NKGRVVMELFADVTPKTAENFRALCTGEKGIGMSGKPLHYKGSTFHRIIPNFMCQGGDFT 75
           N G + +ELF D  PK  ENF ALC        SG   +Y G  FHR I  FM Q GD T
Sbjct: 8   NLGDIKIELFCDDCPKACENFLALCA-------SG---YYNGCIFHRNIKGFMVQTGDPT 57

Query: 76  RGNGTGGESIYGMKFADENFK-MKHTGPGILSMANAGPNTNGSQFFICTQKTPWLDGKHV 134
            G G GGESI+G KF DE  + +KH   G++SMAN GPNTNGSQFFI   K P LDGK+ 
Sbjct: 58  -GTGKGGESIWGKKFEDEFRETLKHDSRGVVSMANNGPNTNGSQFFITYAKQPHLDGKYT 116

Query: 135 VFGKVVDGYSVIKDMEKVGSESG-RTSQTVVIED 167
           VFGKV+DG+  +  +EK+  +   R  + + I+D
Sbjct: 117 VFGKVIDGFETLDTLEKLPVDKKYRPLEEIRIKD 150

Proteins similar to Human cyclophilin-like peptidylprolyl cis- trans isomerase (PPIL3). Members of this family lack a key residue important for cyclosporin binding: the tryptophan residue corresponding to W121 in human hCyP-18a; most members have a histidine at this position. The exact function of the protein is not known. Length = 153

>gnl|CDD|238906 cd01925, cyclophilin_CeCYP16-like, cyclophilin_CeCYP16-like: cyclophilin-type peptidylprolyl cis- trans isomerase) (PPIase) domain similar to Caenorhabditis elegans cyclophilin 16

 Score =  128 bits (323), Expect = 3e-38
 Identities = 55/128 (42%), Positives = 75/128 (58%), Gaps = 12/128 (9%)

Query: 14  KMNKGRVVMELFADVTPKTAENFRALCTGEKGIGMSGKPLHYKGSTFHRIIPNFMCQGGD 73
           K   G + +EL++   PK   NF  LC       + G   +Y  + FHR++P F+ QGGD
Sbjct: 11  KTTAGDIDIELWSKEAPKACRNFIQLC-------LEG---YYDNTIFHRVVPGFIIQGGD 60

Query: 74  FTRGNGTGGESIYGMKFADE-NFKMKHTGPGILSMANAGPNTNGSQFFICTQKTPWLDGK 132
            T G GTGGESIYG  F DE + +++    G++ MANAG ++NGSQFF    K   L+ K
Sbjct: 61  PT-GTGTGGESIYGEPFKDEFHSRLRFNRRGLVGMANAGDDSNGSQFFFTLDKADELNNK 119

Query: 133 HVVFGKVV 140
           H +FGKV 
Sbjct: 120 HTLFGKVT 127

C. elegans CeCYP-16, compared to the archetypal cyclophilin Human cyclophilin A has, a reduced peptidylprolyl cis- trans isomerase activity, is cyclosporin insensitive and shows an altered substrate preference favoring, hydrophobic, acidic or amide amino acids. Most members of this subfamily have a glutamate residue in the active site at the position equivalent to a tryptophan (W121 in Human cyclophilin A), which has been shown to be important for cyclophilin binding. Length = 171

>gnl|CDD|140248 PTZ00221, PTZ00221, cyclophilin; Provisional

 Score =  123 bits (311), Expect = 2e-35
 Identities = 69/175 (39%), Positives = 91/175 (52%), Gaps = 17/175 (9%)

Query: 5   RVFFDILIGKMNKGRVVMELFADVTPKTAENFRALCTGEKGI-GMSGKPLHYKGSTFHRI 63
           R F DI IG +  GR+V ELF DV P+T ENFRAL TG  GI   +G  L Y  +  H +
Sbjct: 54  RAFLDISIGDVLAGRLVFELFEDVVPETVENFRALITGSCGIDTNTGVKLDYLYTPVHHV 113

Query: 64  IPNFMCQGGDFTRGNGTGGE------SIYGMKFADENFKMKHTGPGILSMANAGPNTNGS 117
                    D        GE      S  G   ADE ++ +HT  G+L+M + GP+T+GS
Sbjct: 114 ---------DRNNNIIVLGELDSFNVSSTGTPIADEGYRHRHTERGLLTMISEGPHTSGS 164

Query: 118 QFFICTQKTPWLDGKHVVFGKVVDGYSVIKDMEKVG-SESGRTSQTVVIEDCGQL 171
            F I    +P LD K VVFGK VD  S+++ +E +   + GR    V +  CG L
Sbjct: 165 VFGITLGPSPSLDFKQVVFGKAVDDLSLLEKLESLPLDDVGRPLLPVTVSFCGAL 219

Length = 249

>gnl|CDD|238902 cd01921, cyclophilin_RRM, cyclophilin_RRM: cyclophilin-type peptidylprolyl cis- trans isomerase domain occuring with a C-terminal RNA recognition motif domain (RRM)

 Score =  107 bits (268), Expect = 6e-30
 Identities = 59/166 (35%), Positives = 85/166 (51%), Gaps = 27/166 (16%)

Query: 18  GRVVMELFADVTPKTAENFRALCTGEKGIGMSGKPLHYKGSTFHRIIPNFMCQGGDFTRG 77
           G +V++LF D  P    NF  LC          K  +Y    F+ +  +F+ Q GD T G
Sbjct: 7   GDLVIDLFTDECPLACLNFLKLC----------KLKYYNFCLFYNVQKDFIAQTGDPT-G 55

Query: 78  NGTGGESIYGMK-------FADE-NFKMKHTGPGILSMANAGPNTNGSQFFIC-TQKTPW 128
            G GGESIY          F  E    +KH+  G +SM NAG N NGSQF+I   +   +
Sbjct: 56  TGAGGESIYSQLYGRQARFFEPEILPLLKHSKKGTVSMVNAGDNLNGSQFYITLGENLDY 115

Query: 129 LDGKHVVFGKVVDGYSVIKDM-EKVGSESG------RTSQTVVIED 167
           LDGKH VFG+VV+G+ V++ + + +  + G      R   T +++D
Sbjct: 116 LDGKHTVFGQVVEGFDVLEKINDAIVDDDGRPLKDIRIKHTHILDD 161

This subfamily of the cyclophilin domain family contains a number of eukaryotic cyclophilins having the RRM domain including the nuclear proteins: human hCyP-57, Arabidopsis thaliana AtCYP59, Caenorhabditis elegans CeCyP-44 and Paramecium tetrurelia Kin241. The Kin241 protein has been shown to have a role in cell morphogenesis. Length = 166

>gnl|CDD|238901 cd01920, cyclophilin_EcCYP_like, cyclophilin_EcCYP_like: cyclophilin-type A-like peptidylprolyl cis- trans isomerase (PPIase) domain similar to the cytosolic E

 Score = 75.6 bits (186), Expect = 7e-18
 Identities = 48/165 (29%), Positives = 71/165 (43%), Gaps = 33/165 (20%)

Query: 16  NKGRVVMELFADVTPKTAENFRALCTGEKGIGMSGKPLHYKGSTFHRIIPNFMCQGGDFT 75
           + G +V+EL+ D  P T ENF A     KG         Y  + FHR+I  F+ QGG FT
Sbjct: 5   SLGDIVVELYDDKAPITVENFLAYV--RKG--------FYDNTIFHRVISGFVIQGGGFT 54

Query: 76  -------RGNGTGGESIYGMKFADENFKMKHTGPGILSMA-NAGPNTNGSQFFICTQKTP 127
                         E+  G+              G ++MA    P++  SQFFI  +   
Sbjct: 55  PDLAQKETLKPIKNEAGNGLS----------NTRGTIAMARTNAPDSATSQFFINLKDNA 104

Query: 128 WLD-----GKHVVFGKVVDGYSVIKDMEKVGSESGRTSQTVVIED 167
            LD       + VFG+V +G  V+  +  V + S  + Q V ++D
Sbjct: 105 SLDYQNEQWGYTVFGEVTEGMDVVDKIAGVETYSFGSYQDVPVQD 149

coli cyclophilin A and Streptomyces antibioticus SanCyp18. Compared to the archetypal cyclophilin Human cyclophilin A, these have reduced affinity for cyclosporin A. E. coli cyclophilin A has a similar peptidylprolyl cis- trans isomerase activity to the human cyclophilin A. Most members of this subfamily contain a phenylalanine residue at the position equivalent to Human cyclophilin W121, where a tyrptophan has been shown to be important for cyclophilin binding. Length = 155

>gnl|CDD|182824 PRK10903, PRK10903, peptidyl-prolyl cis-trans isomerase A (rotamase A); Provisional

 Score = 56.4 bits (136), Expect = 3e-10
 Identities = 42/129 (32%), Positives = 53/129 (41%), Gaps = 37/129 (28%)

Query: 55  YKGSTFHRIIPNFMCQGGDFTRGNGTGGESIYGMKFADENFKMKHTGPGILSMANAG-PN 113
           Y  +TFHR+IP FM QGG FT                 E  + K   P I + A+ G  N
Sbjct: 65  YNNTTFHRVIPGFMIQGGGFT-----------------EQMQQKKPNPPIKNEADNGLRN 107

Query: 114 TNG--------------SQFFICTQKTPWLD-GK----HVVFGKVVDGYSVIKDMEKVGS 154
           T G              SQFFI      +LD G+    + VFGKVV G  V   + +V +
Sbjct: 108 TRGTIAMARTADKDSATSQFFINVADNAFLDHGQRDFGYAVFGKVVKGMDVADKISQVPT 167

Query: 155 ESGRTSQTV 163
                 Q V
Sbjct: 168 HDVGPYQNV 176

Length = 190

>gnl|CDD|182734 PRK10791, PRK10791, peptidyl-prolyl cis-trans isomerase B (rotamase B); Provisional

 Score = 55.2 bits (133), Expect = 4e-10
 Identities = 46/168 (27%), Positives = 68/168 (40%), Gaps = 36/168 (21%)

Query: 16  NKGRVVMELFADVTPKTAENFRALCTGEKGIGMSGKPLHYKGSTFHRIIPNFMCQGGDFT 75
           N G +V++ F D  P+T +NF   C              Y  + FHR+I  FM QGG F 
Sbjct: 7   NHGDIVIKTFDDKAPETVKNFLDYCREG----------FYNNTIFHRVINGFMIQGGGFE 56

Query: 76  RGNGTGGESIYGMKFADENFKMKHTGP-------GILSMANAG-PNTNGSQFFICTQKTP 127
                      GMK       +K+          G L+MA    P++  +QFFI      
Sbjct: 57  P----------GMKQKATKEPIKNEANNGLKNTRGTLAMARTQAPHSATAQFFINVVDND 106

Query: 128 WLDGK--------HVVFGKVVDGYSVIKDMEKVGSESGRTSQTVVIED 167
           +L+          + VF +VV+G  V+  ++ V +      Q V  ED
Sbjct: 107 FLNFSGESLQGWGYCVFAEVVEGMDVVDKIKGVATGRSGMHQDVPKED 154

Length = 164

>gnl|CDD|238905 cd01924, cyclophilin_TLP40_like, cyclophilin_TLP40_like: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) similar ot the Spinach thylakoid lumen protein TLP40

 Score = 47.1 bits (112), Expect = 5e-07
 Identities = 47/172 (27%), Positives = 68/172 (39%), Gaps = 45/172 (26%)

Query: 16  NKGRVVMELFADVTPKTAENFRALCTGEKGIGMSGKPLHYKGSTFHRIIPNFMCQGGD-F 74
           + G + + L     P TA NF  L   E+G         Y G  FHR+   F+ Q GD  
Sbjct: 5   DNGTITIVLDGYNAPVTAGNFVDLV--ERGF--------YDGMEFHRVEGGFVVQTGDPQ 54

Query: 75  TRGNG-----TG--------------GESIYGMKFA-----DENFKMKHTGPGILSMANA 110
            +  G     TG               + +YG         DE   +     G ++MA  
Sbjct: 55  GKNPGFPDPETGKSRTIPLEIKPEGQKQPVYGKTLEEAGRYDEQPVLPFNAFGAIAMART 114

Query: 111 --GPNTNGSQFFI-------CTQKTPWLDGKHVVFGKVVDGYSVIKDMEKVG 153
              PN+  SQFF           +   LDG++ VFG V DG  +++++ KVG
Sbjct: 115 EFDPNSASSQFFFLLKDNELTPSRNNVLDGRYAVFGYVTDGLDILREL-KVG 165

Compared to the archetypal cyclophilin Human cyclophilin A, these proteins have similar peptidylprolyl cis- trans isomerase activity and reduced affinity for cyclosporin A. Spinach TLP40 has been shown to have a dual function as a folding catalyst and regulator of dephosphorylation. Length = 176

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	174
KOG0546	372	consensus HSP90 co-chaperone CPR7/Cyclophilin [Pos	100.0
KOG0880	217	consensus Peptidyl-prolyl cis-trans isomerase [Pos	100.0
PTZ00060	183	cyclophilin; Provisional	100.0
cd01926	164	cyclophilin_ABH_like cyclophilin_ABH_like: Cycloph	100.0
PLN03149	186	peptidyl-prolyl isomerase H (cyclophilin H); Provi	100.0
KOG0879	177	consensus U-snRNP-associated cyclophilin type pept	100.0
PTZ00221	249	cyclophilin; Provisional	100.0
KOG0111	298	consensus Cyclophilin-type peptidyl-prolyl cis-tra	100.0
cd01923	159	cyclophilin_RING cyclophilin_RING: cyclophilin-typ	100.0
cd01928	153	Cyclophilin_PPIL3_like Cyclophilin_PPIL3_like. Pro	100.0
COG0652	158	PpiB Peptidyl-prolyl cis-trans isomerase (rotamase	100.0
KOG0881	164	consensus Cyclophilin type peptidyl-prolyl cis-tra	100.0
cd01927	148	cyclophilin_WD40 cyclophilin_WD40: cyclophilin-typ	100.0
cd01921	166	cyclophilin_RRM cyclophilin_RRM: cyclophilin-type	100.0
cd01922	146	cyclophilin_SpCYP2_like cyclophilin_SpCYP2_like: c	100.0
cd01925	171	cyclophilin_CeCYP16-like cyclophilin_CeCYP16-like:	100.0
PRK10903	190	peptidyl-prolyl cis-trans isomerase A (rotamase A)	100.0
PRK10791	164	peptidyl-prolyl cis-trans isomerase B (rotamase B)	100.0
KOG0883	518	consensus Cyclophilin type, U box-containing pepti	100.0
cd01920	155	cyclophilin_EcCYP_like cyclophilin_EcCYP_like: cyc	100.0
PF00160	155	Pro_isomerase: Cyclophilin type peptidyl-prolyl ci	100.0
KOG0882	558	consensus Cyclophilin-related peptidyl-prolyl cis-	100.0
KOG0884	161	consensus Similar to cyclophilin-type peptidyl-pro	100.0
cd00317	146	cyclophilin cyclophilin: cyclophilin-type peptidyl	100.0
KOG0865	167	consensus Cyclophilin type peptidyl-prolyl cis-tra	100.0
cd01924	176	cyclophilin_TLP40_like cyclophilin_TLP40_like: cyc	100.0
KOG0885	439	consensus Peptidyl-prolyl cis-trans isomerase [Pos	100.0
KOG0415	479	consensus Predicted peptidyl prolyl cis-trans isom	100.0
KOG0882	558	consensus Cyclophilin-related peptidyl-prolyl cis-	97.98
TIGR03268	503	methan_mark_3 putative methanogenesis marker prote	97.29
PRK00969	508	hypothetical protein; Provisional	97.23
TIGR03268	503	methan_mark_3 putative methanogenesis marker prote	96.87
COG4070	512	Predicted peptidyl-prolyl cis-trans isomerase (rot	96.79
PRK00969	508	hypothetical protein; Provisional	96.46
PF12903	147	DUF3830: Protein of unknown function (DUF3830); In	95.99
COG4070	512	Predicted peptidyl-prolyl cis-trans isomerase (rot	95.47

>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=7.8e-59  Score=375.56  Aligned_cols=172  Identities=67%  Similarity=1.118  Sum_probs=167.4

Q ss_pred             CCeEEEEEEECCEeceEEEEEEcCCCChHHHHHHHHHhcCCCCC-CCCCccccccCCEEEEeecCceEeeCCCCCCCCCC
Q 030603            3 NPRVFFDILIGKMNKGRVVMELFADVTPKTAENFRALCTGEKGI-GMSGKPLHYKGSTFHRIIPNFMCQGGDFTRGNGTG   81 (174)
Q Consensus         3 ~p~v~~di~~~~t~~G~i~i~L~~~~aP~~~~nF~~l~~~~~~~-~~~g~~~~y~g~~f~ri~~~~~iq~G~~~~~~~~~   81 (174)
                      ||+|||||.|++...|||+++||.|.||+||+||..||+|.+|. ...|+.++|+|+.||||+++|||||||++.++++|
T Consensus         8 ~pr~ffDISI~ge~~GRIvfeLf~dv~PKTaENFraLCtGE~G~~~~~gk~L~YKG~~FHRViK~FMiQgGDfs~gnGtG   87 (372)
T KOG0546|consen    8 NPRVFFDISIGGEPAGRIVFELFNDVVPKTAENFRALCTGEKGGGLTTGKPLHYKGSRFHRVIKNFMIQGGDFSEGNGTG   87 (372)
T ss_pred             CceEEEEEEeCCcccceEEEEeecccCchhHHHHHHHhccccCCCCCCCCeeeecCchhheeeecceeeccccccCCCCC
Confidence            89999999999999999999999999999999999999999984 36899999999999999999999999999999999


Q ss_pred             CCcccCCccCCCccCCCCCCCeEEEeeecCCCCCcceEEEEccCCCCCCCCceEEEEEEcChHHHHHHHhCCCCC-CCcc
Q 030603           82 GESIYGMKFADENFKMKHTGPGILSMANAGPNTNGSQFFICTQKTPWLDGKHVVFGKVVDGYSVIKDMEKVGSES-GRTS  160 (174)
Q Consensus        82 ~~~~~~~~~~~e~~~~~~~~~G~v~~~~~~~~~~~s~FfItl~~~~~ld~~~~vfG~V~~G~~vl~~I~~~~~~~-~~P~  160 (174)
                      |.+|||..+.||++.++|.++++||||+.|||++|||||||+.++|||||+|+|||+||+|++||+.|+.+.++. .+|.
T Consensus        88 GeSIYG~~FdDEnF~lKHdrpflLSMAN~GpNTNgSQFFITT~p~PHLdGkHVVFGqVI~G~~VVr~IEn~~~d~~skP~  167 (372)
T KOG0546|consen   88 GESIYGEKFDDENFELKHDRPFLLSMANRGPNTNGSQFFITTVPTPHLDGKHVVFGQVIKGKEVVREIENLETDEESKPL  167 (372)
T ss_pred             cccccccccccccceeccCcchhhhhhcCCCCCCCcceEEeCCCCCCcCCceeEEeeEeechhHHHHHhccccccCCCCc
Confidence            999999999999999999999999999999999999999999999999999999999999999999999999999 7899


Q ss_pred             cceEEeEeeeeccC
Q 030603          161 QTVVIEDCGQLAEK  174 (174)
Q Consensus       161 ~~i~I~~~g~l~~~  174 (174)
                      .+|+|.+||+|.++
T Consensus       168 ~dV~I~dCGel~~~  181 (372)
T KOG0546|consen  168 ADVVISDCGELVKK  181 (372)
T ss_pred             cceEeccccccccc
Confidence            99999999999764

>KOG0880 consensus Peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=1.6e-53  Score=319.14  Aligned_cols=163  Identities=65%  Similarity=1.139  Sum_probs=157.4

Q ss_pred             CeEEEEEEECCEeceEEEEEEcCCCChHHHHHHHHHhc-CCCCCCCCCccccccCCEEEEeecCceEeeCCCCCCCCCCC
Q 030603            4 PRVFFDILIGKMNKGRVVMELFADVTPKTAENFRALCT-GEKGIGMSGKPLHYKGSTFHRIIPNFMCQGGDFTRGNGTGG   82 (174)
Q Consensus         4 p~v~~di~~~~t~~G~i~i~L~~~~aP~~~~nF~~l~~-~~~~~~~~g~~~~y~g~~f~ri~~~~~iq~G~~~~~~~~~~   82 (174)
                      .+|||||++.+...|||+|+||++.+|+||+||.+||+ +.++.+       |.+++||||+|||||||||.+.+++.++
T Consensus        40 ~kV~fdi~~g~~~~grIvigLfG~~vPKTV~NF~~l~~~~~~~~g-------Y~gS~FhRVi~nfmIQGGd~t~g~gtGg  112 (217)
T KOG0880|consen   40 HKVYFDIEIGGEPVGRIVIGLFGKVVPKTVENFRALATSGEKGYG-------YKGSKFHRVIPNFMIQGGDFTKGDGTGG  112 (217)
T ss_pred             eEEEEEEEECCEeccEEEEEeccccchHHHHHHHHHHccCCCCcc-------cCCceeeeeecCceeecCccccCCCCCC
Confidence            48999999999999999999999999999999999998 666555       9999999999999999999999999999


Q ss_pred             CcccCCccCCCccCCCCCCCeEEEeeecCCCCCcceEEEEccCCCCCCCCceEEEEEEcChHHHHHHHhCCCCC-CCccc
Q 030603           83 ESIYGMKFADENFKMKHTGPGILSMANAGPNTNGSQFFICTQKTPWLDGKHVVFGKVVDGYSVIKDMEKVGSES-GRTSQ  161 (174)
Q Consensus        83 ~~~~~~~~~~e~~~~~~~~~G~v~~~~~~~~~~~s~FfItl~~~~~ld~~~~vfG~V~~G~~vl~~I~~~~~~~-~~P~~  161 (174)
                      .+++|.++++|++.++|.++|.||||+.||+++|||||||+...|+||++++|||+|++||++|.+|+.++|+. ++|.+
T Consensus       113 ~SIyG~~F~DENf~LkH~rpG~lSMAn~GpDtNGsQFfItT~~t~wLDGkhVVFGqVl~Gmdvv~~Ie~~~TD~~dkP~e  192 (217)
T KOG0880|consen  113 KSIYGEKFPDENFKLKHDRPGRLSMANAGPDTNGSQFFITTVKTPWLDGKHVVFGQVLEGMDVVRKIENVKTDERDKPLE  192 (217)
T ss_pred             eEeecCCCCCccceeecCCCceEeeeccCCCCCCceEEEEecCCccccCceeEEeeehhhHHHHHHHHhcccCCCCCccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999 99999


Q ss_pred             ceEEeEeeeecc
Q 030603          162 TVVIEDCGQLAE  173 (174)
Q Consensus       162 ~i~I~~~g~l~~  173 (174)
                      +++|.+||.|.-
T Consensus       193 ~v~I~~~g~l~~  204 (217)
T KOG0880|consen  193 DVVIANCGELPV  204 (217)
T ss_pred             cEEEeecCcccc
Confidence            999999998864

>PTZ00060 cyclophilin; Provisional

Probab=100.00  E-value=4.5e-51  Score=311.76  Aligned_cols=171  Identities=69%  Similarity=1.171  Sum_probs=157.5

Q ss_pred             CCCCeEEEEEEECCEeceEEEEEEcCCCChHHHHHHHHHhcCCCCCCCCCccccccCCEEEEeecCceEeeCCCCCCCCC
Q 030603            1 MTNPRVFFDILIGKMNKGRVVMELFADVTPKTAENFRALCTGEKGIGMSGKPLHYKGSTFHRIIPNFMCQGGDFTRGNGT   80 (174)
Q Consensus         1 ~~~p~v~~di~~~~t~~G~i~i~L~~~~aP~~~~nF~~l~~~~~~~~~~g~~~~y~g~~f~ri~~~~~iq~G~~~~~~~~   80 (174)
                      |.||+||||+.+++++.|+|+||||.+.||++|+||++||++....+ .|+..+|+++.||||+|+++||+||+..+.+.
T Consensus        13 ~~~~~v~~di~i~~~~~G~ivIeL~~d~aP~t~~nF~~L~~g~~~~~-~g~~~~Y~~~~fhRvi~~~~iqgGd~~~~~g~   91 (183)
T PTZ00060         13 SKRPKVFFDISIDNAPAGRIVFELFSDVTPKTAENFRALCIGDKVGS-SGKNLHYKGSIFHRIIPQFMCQGGDITNHNGT   91 (183)
T ss_pred             CCCCEEEEEEEECCEeCceEEEEEcCCCCcHHHHHHHHHhcCCcccc-cCcccccCCeEEEEEcCCCeEEeCCccCCCCC
Confidence            45899999999999999999999999999999999999998765432 45566799999999999999999998766777


Q ss_pred             CCCcccCCccCCCccCCCCCCCeEEEeeecCCCCCcceEEEEccCCCCCCCCceEEEEEEcChHHHHHHHhCCCCCCCcc
Q 030603           81 GGESIYGMKFADENFKMKHTGPGILSMANAGPNTNGSQFFICTQKTPWLDGKHVVFGKVVDGYSVIKDMEKVGSESGRTS  160 (174)
Q Consensus        81 ~~~~~~~~~~~~e~~~~~~~~~G~v~~~~~~~~~~~s~FfItl~~~~~ld~~~~vfG~V~~G~~vl~~I~~~~~~~~~P~  160 (174)
                      ++.++++..+++|...+.|..+|+|+|++.++++++|||||++.++|+||++|+|||+|++|||||++|+++++..++|.
T Consensus        92 ~g~~~~g~~~~~e~~~~~h~~~G~lsma~~g~~~~~sqFfIt~~~~~~Ldg~~tvFG~Vi~G~dvl~~I~~~~~~~~~P~  171 (183)
T PTZ00060         92 GGESIYGRKFTDENFKLKHDQPGLLSMANAGPNTNGSQFFITTVPCPWLDGKHVVFGKVIEGMEVVRAMEKEGTQSGYPK  171 (183)
T ss_pred             CCCcccccccCCccccccCCCCCEEEeccCCCCCCcceEEEEeCCCcccCCCccEEEEEEccHHHHHHHHccCCCCCCCc
Confidence            88888888888888889999999999999999999999999999999999999999999999999999999999779999


Q ss_pred             cceEEeEeeeec
Q 030603          161 QTVVIEDCGQLA  172 (174)
Q Consensus       161 ~~i~I~~~g~l~  172 (174)
                      ++|+|.+||+|+
T Consensus       172 ~~v~I~~cg~~~  183 (183)
T PTZ00060        172 KPVVVTDCGELQ  183 (183)
T ss_pred             CCeEEEEeEEcC
Confidence            999999999985

>cd01926 cyclophilin_ABH_like cyclophilin_ABH_like: Cyclophilin A, B and H-like cyclophilin-type peptidylprolyl cis- trans isomerase (PPIase) domain

Probab=100.00  E-value=4.1e-50  Score=301.91  Aligned_cols=164  Identities=77%  Similarity=1.301  Sum_probs=150.8

Q ss_pred             CeEEEEEEECCEeceEEEEEEcCCCChHHHHHHHHHhcCCCCCCCCCccccccCCEEEEeecCceEeeCCCCCCCCCCCC
Q 030603            4 PRVFFDILIGKMNKGRVVMELFADVTPKTAENFRALCTGEKGIGMSGKPLHYKGSTFHRIIPNFMCQGGDFTRGNGTGGE   83 (174)
Q Consensus         4 p~v~~di~~~~t~~G~i~i~L~~~~aP~~~~nF~~l~~~~~~~~~~g~~~~y~g~~f~ri~~~~~iq~G~~~~~~~~~~~   83 (174)
                      |+||||+.+++++.|+|+||||.+.||++|+||++||++.++.+.  +..+|+++.|||++|+++||+|++..+++.++.
T Consensus         1 p~v~~di~i~~~~~G~i~ieL~~~~aP~~~~nF~~L~~~~~g~~~--~~~~Y~~~~f~Rv~~~~~iq~Gd~~~~~g~~~~   78 (164)
T cd01926           1 PKVFFDITIGGEPAGRIVMELFADVVPKTAENFRALCTGEKGKGG--KPFGYKGSTFHRVIPDFMIQGGDFTRGNGTGGK   78 (164)
T ss_pred             CEEEEEEeECCeeceeEEEEEeCCCCCHHHHHHHHHhcccCCCcc--cccccCCCEEEEEeCCcEEEcCCccCCCCCCCC
Confidence            899999999999999999999999999999999999986544211  234699999999999999999998766777778


Q ss_pred             cccCCccCCCccCCCCCCCeEEEeeecCCCCCcceEEEEccCCCCCCCCceEEEEEEcChHHHHHHHhCCCCCCCcccce
Q 030603           84 SIYGMKFADENFKMKHTGPGILSMANAGPNTNGSQFFICTQKTPWLDGKHVVFGKVVDGYSVIKDMEKVGSESGRTSQTV  163 (174)
Q Consensus        84 ~~~~~~~~~e~~~~~~~~~G~v~~~~~~~~~~~s~FfItl~~~~~ld~~~~vfG~V~~G~~vl~~I~~~~~~~~~P~~~i  163 (174)
                      ++++..+++|...+.|..+|+|+|++.++++++|||||+++++|+||++|+|||||++|||||++|++++++.++|.++|
T Consensus        79 ~~~g~~~~~e~~~~~h~~~G~lsma~~~~~~~~sqFfIt~~~~~~Ld~~~tvFG~V~~G~dvl~~i~~~~~~~~~P~~~i  158 (164)
T cd01926          79 SIYGEKFPDENFKLKHTGPGLLSMANAGPNTNGSQFFITTVKTPWLDGKHVVFGKVVEGMDVVKKIENVGSGNGKPKKKV  158 (164)
T ss_pred             cccCCccCCCCccccCCCccEEEeeECCCCCcccEEEEEeCCCCccCCcccEEEEEEEcHHHHHHHHcCCCCCCCCcCCe
Confidence            88888888888889999999999999999999999999999999999999999999999999999999999888999999


Q ss_pred             EEeEee
Q 030603          164 VIEDCG  169 (174)
Q Consensus       164 ~I~~~g  169 (174)
                      +|.+||
T Consensus       159 ~I~~cG  164 (164)
T cd01926         159 VIADCG  164 (164)
T ss_pred             EEEECC
Confidence            999998

This family represents the archetypal cystolic cyclophilin similar to human cyclophilins A, B and H. PPIase is an enzyme which accelerates protein folding by catalyzing the cis-trans isomerization of the peptide bonds preceding proline residues. These enzymes have been implicated in protein folding processes which depend on catalytic /chaperone-like activities. As cyclophilins, Human hCyP-A, human cyclophilin-B (hCyP-19), S. cerevisiae Cpr1 and C. elegans Cyp-3, are inhibited by the immunosuppressive drug cyclopsporin A (CsA). CsA binds to the PPIase active site. Cyp-3. S. cerevisiae Cpr1 interacts with the Rpd3 - Sin3 complex and in addition is a component of the Set3 complex. S. cerevisiae Cpr1 has also been shown to have a role in Zpr1p nuclear transport. Human cyclophilin H associates with the [U4/U6.U5] tri-snRNP particles of the spl

>PLN03149 peptidyl-prolyl isomerase H (cyclophilin H); Provisional

Probab=100.00  E-value=5.3e-50  Score=306.32  Aligned_cols=169  Identities=59%  Similarity=1.051  Sum_probs=154.9

Q ss_pred             CCCCeEEEEEEECCEeceEEEEEEcCCCChHHHHHHHHHhcCCCCCCCCCccccccCCEEEEeecCceEeeCCCCCCCCC
Q 030603            1 MTNPRVFFDILIGKMNKGRVVMELFADVTPKTAENFRALCTGEKGIGMSGKPLHYKGSTFHRIIPNFMCQGGDFTRGNGT   80 (174)
Q Consensus         1 ~~~p~v~~di~~~~t~~G~i~i~L~~~~aP~~~~nF~~l~~~~~~~~~~g~~~~y~g~~f~ri~~~~~iq~G~~~~~~~~   80 (174)
                      |.||+||||+.+++++.|+|+||||.+.||++|+||++||++...  +.|+...|+++.||||+|+++||+||+..+++.
T Consensus        16 ~~~~~v~~di~~~~~~~G~i~ieL~~~~aP~t~~NF~~Lc~g~~~--~~g~~~~Y~~~~fhrVi~~f~iqgGd~~~~~g~   93 (186)
T PLN03149         16 PKNPVVFFDVTIGGIPAGRIKMELFADIAPKTAENFRQFCTGEFR--KAGLPQGYKGCQFHRVIKDFMIQGGDFLKGDGT   93 (186)
T ss_pred             CCCCEEEEEEeeCCcccccEEEEEcCCCCcHHHHHHHHHHhhhcc--ccCcccccCCcEEEEEcCCcEEEcCCcccCCCC
Confidence            468999999999999999999999999999999999999987642  234444599999999999999999998767777


Q ss_pred             CCCcccCCccCCCccCCCCCCCeEEEeeecCCCCCcceEEEEccCCCCCCCCceEEEEEE-cChHHHHHHHhCCCCC-CC
Q 030603           81 GGESIYGMKFADENFKMKHTGPGILSMANAGPNTNGSQFFICTQKTPWLDGKHVVFGKVV-DGYSVIKDMEKVGSES-GR  158 (174)
Q Consensus        81 ~~~~~~~~~~~~e~~~~~~~~~G~v~~~~~~~~~~~s~FfItl~~~~~ld~~~~vfG~V~-~G~~vl~~I~~~~~~~-~~  158 (174)
                      ++.++++..+++|...+.|+.+|+|+|++.++++++|||||++.++|+||++|+|||+|+ +||+||++|++++++. ++
T Consensus        94 g~~~~~g~~f~~e~~~~~h~~~G~lsma~~g~~s~~sqFfIt~~~~p~Ldg~~tVFG~Vi~eG~dvl~~I~~~~~~~~~~  173 (186)
T PLN03149         94 GCVSIYGSKFEDENFIAKHTGPGLLSMANSGPNTNGCQFFITCAKCDWLDNKHVVFGRVLGDGLLVVRKIENVATGPNNR  173 (186)
T ss_pred             CcccccCCccCCcccccccCCCCEEEEeeCCCCCcccEEEEECCCCCccCCCceEEEEEEECcHHHHHHHHcCCCCCCCC
Confidence            888888888888888899999999999999999999999999999999999999999999 8999999999999976 99


Q ss_pred             cccceEEeEeeee
Q 030603          159 TSQTVVIEDCGQL  171 (174)
Q Consensus       159 P~~~i~I~~~g~l  171 (174)
                      |..+|+|.+||++
T Consensus       174 P~~~i~I~~cG~~  186 (186)
T PLN03149        174 PKLACVISECGEM  186 (186)
T ss_pred             CcCCeEEEeCEeC
Confidence            9999999999985

>KOG0879 consensus U-snRNP-associated cyclophilin type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=1.1e-50  Score=287.52  Aligned_cols=167  Identities=57%  Similarity=1.019  Sum_probs=162.1

Q ss_pred             CCeEEEEEEECCEeceEEEEEEcCCCChHHHHHHHHHhcCCCCCCCCCccccccCCEEEEeecCceEeeCCCCCCCCCCC
Q 030603            3 NPRVFFDILIGKMNKGRVVMELFADVTPKTAENFRALCTGEKGIGMSGKPLHYKGSTFHRIIPNFMCQGGDFTRGNGTGG   82 (174)
Q Consensus         3 ~p~v~~di~~~~t~~G~i~i~L~~~~aP~~~~nF~~l~~~~~~~~~~g~~~~y~g~~f~ri~~~~~iq~G~~~~~~~~~~   82 (174)
                      ||.||||+.+.+...|||.||||.|.+|++++||.+.|+|...  ..|++.-|++++|||++++||||+||...+++++.
T Consensus        10 nPvVF~dv~igg~~~GrikieLFadivPkTAENFRQFCTGE~r--~~g~PiGYK~~tFHRvIkdFMiQgGDFv~gDGtG~   87 (177)
T KOG0879|consen   10 NPVVFFDVAIGGRPIGRIKIELFADIVPKTAENFRQFCTGEYR--KDGVPIGYKNSTFHRVIKDFMIQGGDFVNGDGTGV   87 (177)
T ss_pred             CCeEEEEEeeCCEEcceEEEEEeeccChhhHHHHHhhcccccc--cCCccccccccchHHHhhhheeccCceecCCCceE
Confidence            9999999999999999999999999999999999999999764  57888889999999999999999999999999999


Q ss_pred             CcccCCccCCCccCCCCCCCeEEEeeecCCCCCcceEEEEccCCCCCCCCceEEEEEEcChHHHHHHHhCCCCC-CCccc
Q 030603           83 ESIYGMKFADENFKMKHTGPGILSMANAGPNTNGSQFFICTQKTPWLDGKHVVFGKVVDGYSVIKDMEKVGSES-GRTSQ  161 (174)
Q Consensus        83 ~~~~~~~~~~e~~~~~~~~~G~v~~~~~~~~~~~s~FfItl~~~~~ld~~~~vfG~V~~G~~vl~~I~~~~~~~-~~P~~  161 (174)
                      .++++.++++|++.++|..+|++|||+++++++|.|||||..+..+||++++|||+|++|+.++++|+.+++.. ++|+-
T Consensus        88 ~sIy~~~F~DENFtlkH~~PGlLSMANsG~~tNGCQFFITcakcdfLD~KHVVFGrvldGlli~rkIEnvp~G~NnkPKl  167 (177)
T KOG0879|consen   88 ASIYGSTFPDENFTLKHDGPGLLSMANSGKDTNGCQFFITCAKCDFLDGKHVVFGRVLDGLLIMRKIENVPTGPNNKPKL  167 (177)
T ss_pred             EEEcCCCCCCcceeeecCCCceeeccccCCCCCCceEEEEecccccccCceEEEeeeehhhhhhhhhhcCCCCCCCCCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999998 99999


Q ss_pred             ceEEeEeeee
Q 030603          162 TVVIEDCGQL  171 (174)
Q Consensus       162 ~i~I~~~g~l  171 (174)
                      +|.|..||++
T Consensus       168 ~v~i~qCGem  177 (177)
T KOG0879|consen  168 PVVIVQCGEM  177 (177)
T ss_pred             cEEEeecccC
Confidence            9999999974

>PTZ00221 cyclophilin; Provisional

Probab=100.00  E-value=1.4e-48  Score=308.00  Aligned_cols=167  Identities=41%  Similarity=0.623  Sum_probs=152.2

Q ss_pred             CCeEEEEEEECCEeceEEEEEEcCCCChHHHHHHHHHhcCCCCCC-CCCccccccCCEEEEeecC-ceEeeCCCCCCCCC
Q 030603            3 NPRVFFDILIGKMNKGRVVMELFADVTPKTAENFRALCTGEKGIG-MSGKPLHYKGSTFHRIIPN-FMCQGGDFTRGNGT   80 (174)
Q Consensus         3 ~p~v~~di~~~~t~~G~i~i~L~~~~aP~~~~nF~~l~~~~~~~~-~~g~~~~y~g~~f~ri~~~-~~iq~G~~~~~~~~   80 (174)
                      +|+||||+.+++.+.|+|+|+||.+.||++|+||++||+|.++.+ ..|+..+|+++.||||+++ ++||+||+..    
T Consensus        52 ~~rVfldisig~~~~GrIvIELf~d~aP~T~eNF~~Lc~g~~g~~~~~g~k~~Y~gt~FhRVi~~~f~iqgGD~~~----  127 (249)
T PTZ00221         52 SCRAFLDISIGDVLAGRLVFELFEDVVPETVENFRALITGSCGIDTNTGVKLDYLYTPVHHVDRNNNIIVLGELDS----  127 (249)
T ss_pred             CCEEEEEEeeCCeecceEEEEEeCCCCcHHHHHHHHHhhcccccccccCcccccCCCEEEEEeCCCCEEEeCCCCC----
Confidence            899999999999999999999999999999999999999877543 3455566999999999985 8999999763    


Q ss_pred             CCCcccCCccCCCccCCCCCCCeEEEeeecCCCCCcceEEEEccCCCCCCCCceEEEEEEcChHHHHHHHhCCCCC-CCc
Q 030603           81 GGESIYGMKFADENFKMKHTGPGILSMANAGPNTNGSQFFICTQKTPWLDGKHVVFGKVVDGYSVIKDMEKVGSES-GRT  159 (174)
Q Consensus        81 ~~~~~~~~~~~~e~~~~~~~~~G~v~~~~~~~~~~~s~FfItl~~~~~ld~~~~vfG~V~~G~~vl~~I~~~~~~~-~~P  159 (174)
                      .+.+++|.++.+|...++|+.+|+|+|++.++++++||||||+.++|+||++|+|||+|++||+||++|++++++. ++|
T Consensus       128 ~g~s~~G~~f~dE~~~~~h~~~G~LsMan~GpntngSQFfITl~~~p~LDgk~vVFGrVveGmdVv~kIe~v~~d~~grP  207 (249)
T PTZ00221        128 FNVSSTGTPIADEGYRHRHTERGLLTMISEGPHTSGSVFGITLGPSPSLDFKQVVFGKAVDDLSLLEKLESLPLDDVGRP  207 (249)
T ss_pred             CCccCCCCcccCccccccCCCCCEEEeCcCCCCCccceEEEECCCCCccCCCceEEEEEEeCHHHHHHHHcCCcCCCCCC
Confidence            2345567889999989999999999999999999999999999999999999999999999999999999999876 999


Q ss_pred             ccceEEeEeeeecc
Q 030603          160 SQTVVIEDCGQLAE  173 (174)
Q Consensus       160 ~~~i~I~~~g~l~~  173 (174)
                      .++|+|.+||+|.+
T Consensus       208 ~~~V~I~~Cgvl~~  221 (249)
T PTZ00221        208 LLPVTVSFCGALTG  221 (249)
T ss_pred             CCCeEEEECeEecC
Confidence            99999999999975

>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=1.1e-47  Score=292.39  Aligned_cols=165  Identities=68%  Similarity=1.187  Sum_probs=162.0

Q ss_pred             CCCCeEEEEEEECCEeceEEEEEEcCCCChHHHHHHHHHhcCCCCCCCCCccccccCCEEEEeecCceEeeCCCCCCCCC
Q 030603            1 MTNPRVFFDILIGKMNKGRVVMELFADVTPKTAENFRALCTGEKGIGMSGKPLHYKGSTFHRIIPNFMCQGGDFTRGNGT   80 (174)
Q Consensus         1 ~~~p~v~~di~~~~t~~G~i~i~L~~~~aP~~~~nF~~l~~~~~~~~~~g~~~~y~g~~f~ri~~~~~iq~G~~~~~~~~   80 (174)
                      |+||+||+|+++.+...|||+++|..+..|++++||..||++.+|.+       |+|+.||||+|.||+||||++++++.
T Consensus       134 ~~~pqv~~~ikig~~~~Gri~~~lrtdv~Pmtaenfr~Lctge~gfg-------ykgssfhriip~fmcqggdftn~ngt  206 (298)
T KOG0111|consen  134 MENPQVYHDIKIGEDRAGRIVMLLRTDVVPMTAENFRCLCTGEAGFG-------YKGSSFHRIIPKFMCQGGDFTNGNGT  206 (298)
T ss_pred             hhChHhhhheeecccccceEEEeecccCChhhhhhhhhhccccCccC-------ccccchhhhhhhhhccCCccccCCCC
Confidence            68999999999999999999999999999999999999999999988       99999999999999999999999999


Q ss_pred             CCCcccCCccCCCccCCCCCCCeEEEeeecCCCCCcceEEEEccCCCCCCCCceEEEEEEcChHHHHHHHhCCCCCCCcc
Q 030603           81 GGESIYGMKFADENFKMKHTGPGILSMANAGPNTNGSQFFICTQKTPWLDGKHVVFGKVVDGYSVIKDMEKVGSESGRTS  160 (174)
Q Consensus        81 ~~~~~~~~~~~~e~~~~~~~~~G~v~~~~~~~~~~~s~FfItl~~~~~ld~~~~vfG~V~~G~~vl~~I~~~~~~~~~P~  160 (174)
                      ++.+++|..+.+|++.++|..+|+|||+++++|++||||||++....+||++++|||.|++||+|++++++.+++.++|.
T Consensus       207 ggksiygkkfddenf~lkht~pgtlsmansgantngsqffict~ktdwldgkhvvfghv~eg~~vvrq~e~qgsksgkp~  286 (298)
T KOG0111|consen  207 GGKSIYGKKFDDENFTLKHTMPGTLSMANSGANTNGSQFFICTEKTDWLDGKHVVFGHVVEGMNVVRQVEQQGSKSGKPQ  286 (298)
T ss_pred             CCcccccccccccceeeecCCCceeeccccCCCCCCceEEEEecccccccCceeEEeeecchHHHHHHHHhccCCCCCcc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cceEEeEeeeec
Q 030603          161 QTVVIEDCGQLA  172 (174)
Q Consensus       161 ~~i~I~~~g~l~  172 (174)
                      ..|+|.+||+|.
T Consensus       287 qkv~i~~cge~~  298 (298)
T KOG0111|consen  287 QKVKIVECGEIE  298 (298)
T ss_pred             eEEEEEeccccC
Confidence            999999999874

>cd01923 cyclophilin_RING cyclophilin_RING: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) having a modified RING finger domain

Probab=100.00  E-value=2.6e-45  Score=274.46  Aligned_cols=148  Identities=51%  Similarity=0.860  Sum_probs=137.1

Q ss_pred             EeceEEEEEEcCCCChHHHHHHHHHhcCCCCCCCCCccccccCCEEEEeecCceEeeCCCCCCCCCCCCcccCCccCCCc
Q 030603           15 MNKGRVVMELFADVTPKTAENFRALCTGEKGIGMSGKPLHYKGSTFHRIIPNFMCQGGDFTRGNGTGGESIYGMKFADEN   94 (174)
Q Consensus        15 t~~G~i~i~L~~~~aP~~~~nF~~l~~~~~~~~~~g~~~~y~g~~f~ri~~~~~iq~G~~~~~~~~~~~~~~~~~~~~e~   94 (174)
                      |+.|+|+||||++.||++|+||++||+       .|   ||+++.|||++|++++|+|++. +++.++.++++..+++|.
T Consensus         6 T~~G~i~ieL~~~~aP~t~~nF~~L~~-------~g---~Y~~~~f~rv~~~~~iq~Gd~~-~~g~~~~~~~g~~~~~E~   74 (159)
T cd01923           6 TNKGDLNLELHCDKAPKACENFIKLCK-------KG---YYDGTIFHRSIRNFMIQGGDPT-GTGRGGESIWGKPFKDEF   74 (159)
T ss_pred             EccccEEEEEeCCCChHHHHHHHHHHh-------cC---ccCCcEEEEEeCCcEEEecccC-CCCCCCccccCCccCccc
Confidence            899999999999999999999999994       33   4999999999999999999986 566777888888888885


Q ss_pred             c-CCCCCCCeEEEeeecCCCCCcceEEEEccCCCCCCCCceEEEEEEcChHHHHHHHhCCCCC-CCcccceEEeEeeeec
Q 030603           95 F-KMKHTGPGILSMANAGPNTNGSQFFICTQKTPWLDGKHVVFGKVVDGYSVIKDMEKVGSES-GRTSQTVVIEDCGQLA  172 (174)
Q Consensus        95 ~-~~~~~~~G~v~~~~~~~~~~~s~FfItl~~~~~ld~~~~vfG~V~~G~~vl~~I~~~~~~~-~~P~~~i~I~~~g~l~  172 (174)
                      . .++|+.+|+|+|++.++++++|||||+++++|+||++|+|||||++||++|++|+++++++ ++|+++|+|.+|+++.
T Consensus        75 ~~~~~h~~~G~v~ma~~~~~s~~sqFfIt~~~~~~Ld~~~~vFG~V~~G~~vl~~I~~~~~~~~~~P~~~i~I~~~~i~~  154 (159)
T cd01923          75 KPNLSHDGRGVLSMANSGPNTNGSQFFITYRSCKHLDGKHTVFGRVVGGLETLEAMENVPDPGTDRPKEEIKIEDTSVFV  154 (159)
T ss_pred             ccCcCcCCCcEEEEeeCCCCCcccEEEEECCCCcccCCCccEEEEEEcCHHHHHHHHcCCCCCCCCCCCCeEEEEeEEEe
Confidence            4 6788899999999999999999999999999999999999999999999999999999876 9999999999999997


Q ss_pred             c
Q 030603          173 E  173 (174)
Q Consensus       173 ~  173 (174)
                      |
T Consensus       155 d  155 (159)
T cd01923         155 D  155 (159)
T ss_pred             C
Confidence            6

This group includes the nuclear proteins, Human hCyP-60 and Caenorhabditis elegans MOG-6 which, compared to the archetypal cyclophilin Human cyclophilin A exhibit reduced peptidylprolyl cis- trans isomerase activity and lack a residue important for cyclophilin binding. Human hCyP-60 has been shown to physically interact with the proteinase inhibitor peptide eglin c and; C. elegans MOG-6 to physically interact with MEP-1, a nuclear zinc finger protein. MOG-6 has been shown to function in germline sex determination.

>cd01928 Cyclophilin_PPIL3_like Cyclophilin_PPIL3_like

Probab=100.00  E-value=8.7e-45  Score=270.00  Aligned_cols=144  Identities=52%  Similarity=0.859  Sum_probs=132.8

Q ss_pred             EeceEEEEEEcCCCChHHHHHHHHHhcCCCCCCCCCccccccCCEEEEeecCceEeeCCCCCCCCCCCCcccCCccCCCc
Q 030603           15 MNKGRVVMELFADVTPKTAENFRALCTGEKGIGMSGKPLHYKGSTFHRIIPNFMCQGGDFTRGNGTGGESIYGMKFADEN   94 (174)
Q Consensus        15 t~~G~i~i~L~~~~aP~~~~nF~~l~~~~~~~~~~g~~~~y~g~~f~ri~~~~~iq~G~~~~~~~~~~~~~~~~~~~~e~   94 (174)
                      |+.|+|+||||++.||++|+||++||++       |   ||+++.|||++|++++|+||+. +++.++.++++.++++|.
T Consensus         7 T~~G~i~ieL~~~~aP~t~~nF~~L~~~-------g---~Y~~~~f~rv~~~f~iq~Gd~~-~~g~g~~~~~~~~~~~e~   75 (153)
T cd01928           7 TNLGDIKIELFCDDCPKACENFLALCAS-------G---YYNGCIFHRNIKGFMVQTGDPT-GTGKGGESIWGKKFEDEF   75 (153)
T ss_pred             EccccEEEEEcCCCCcHHHHHHHHHHhc-------C---ccCCcEEEEeCCCCEEEccccC-CCCCCCCccCCCcccccc
Confidence            8999999999999999999999999953       3   4999999999999999999986 556677778888888887


Q ss_pred             c-CCCCCCCeEEEeeecCCCCCcceEEEEccCCCCCCCCceEEEEEEcChHHHHHHHhCCCCC-CCcccceEEeEee
Q 030603           95 F-KMKHTGPGILSMANAGPNTNGSQFFICTQKTPWLDGKHVVFGKVVDGYSVIKDMEKVGSES-GRTSQTVVIEDCG  169 (174)
Q Consensus        95 ~-~~~~~~~G~v~~~~~~~~~~~s~FfItl~~~~~ld~~~~vfG~V~~G~~vl~~I~~~~~~~-~~P~~~i~I~~~g  169 (174)
                      . .+.|+.+|+|+|++.++++++|||||+++++|+||++|+|||||++|||+|++|++++++. ++|..+|+|.+|.
T Consensus        76 ~~~~~~~~~G~v~ma~~~~~~~~SqFfI~~~~~~~Ld~~~tvFG~V~~G~dvl~~I~~~~~~~~~~P~~~i~I~~~~  152 (153)
T cd01928          76 RETLKHDSRGVVSMANNGPNTNGSQFFITYAKQPHLDGKYTVFGKVIDGFETLDTLEKLPVDKKYRPLEEIRIKDVT  152 (153)
T ss_pred             ccCCCcCCCcEEEEeeCCCCCcccEEEEEeCCCcccCCCceEEEEEEeCHHHHHHHHcCCCCCCCCCcCCeEEEEeE
Confidence            5 5788899999999999999999999999999999999999999999999999999999876 9999999999984

Proteins similar to Human cyclophilin-like peptidylprolyl cis- trans isomerase (PPIL3). Members of this family lack a key residue important for cyclosporin binding: the tryptophan residue corresponding to W121 in human hCyP-18a; most members have a histidine at this position. The exact function of the protein is not known.

>COG0652 PpiB Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=4.2e-45  Score=270.29  Aligned_cols=146  Identities=47%  Similarity=0.798  Sum_probs=131.0

Q ss_pred             CCEeceEEEEEEcCCCChHHHHHHHHHhcCCCCCCCCCccccccCCEEEEeecCceEeeCCCCCCCCCCCCcccCCccCC
Q 030603           13 GKMNKGRVVMELFADVTPKTAENFRALCTGEKGIGMSGKPLHYKGSTFHRIIPNFMCQGGDFTRGNGTGGESIYGMKFAD   92 (174)
Q Consensus        13 ~~t~~G~i~i~L~~~~aP~~~~nF~~l~~~~~~~~~~g~~~~y~g~~f~ri~~~~~iq~G~~~~~~~~~~~~~~~~~~~~   92 (174)
                      ..|+.|+|+|+||++.||+||+||++||+       .|+   |+|+.||||+|+||+||||+..+.+.+++   +.++++
T Consensus         4 ~~t~~G~I~ieL~~~~aP~Tv~NF~~l~~-------~g~---Ydg~~FHRVi~~FmiQgGd~~~~~g~gg~---~~~f~~   70 (158)
T COG0652           4 LETNKGDITIELYPDKAPKTVANFLQLVK-------EGF---YDGTIFHRVIPGFMIQGGDPTGGDGTGGP---GPPFKD   70 (158)
T ss_pred             eeccCCCEEEEECCCcCcHHHHHHHHHHH-------cCC---CCCceEEEeecCceeecCCCCCCCCCCCC---CCCCcc
Confidence            45999999999999999999999999994       444   99999999999999999999876677776   378899


Q ss_pred             CccCCCCCC--CeEEEeeecC-CCCCcceEEEEccCCCCCCCCceEEEEEEcChHHHHHHHhCCCCC-----CCcccceE
Q 030603           93 ENFKMKHTG--PGILSMANAG-PNTNGSQFFICTQKTPWLDGKHVVFGKVVDGYSVIKDMEKVGSES-----GRTSQTVV  164 (174)
Q Consensus        93 e~~~~~~~~--~G~v~~~~~~-~~~~~s~FfItl~~~~~ld~~~~vfG~V~~G~~vl~~I~~~~~~~-----~~P~~~i~  164 (174)
                      |.....|.+  +|+||||+.+ |++++|||||++.+.|+||++|+|||+|++|||+|++|++..+..     ..|..+++
T Consensus        71 E~~~~~~~~~~~G~lsMA~~g~P~t~~SQFFI~~~~~~~Ld~~ytVFG~Vv~GmdvvdkI~~~~~~~~~~~~~~~~~~~~  150 (158)
T COG0652          71 ENFALNGDRHKRGTLSMARAGDPNSNGSQFFITVVDNPFLDGKYTVFGQVVEGMDVVDKIKNGDTDDSGYVQDVPADPVK  150 (158)
T ss_pred             cccccccccCCcceEeEcccCCcCCccCeEEEEecCCcccCCCCcEEEEEehhHHHHHHHHcCCccCCCcccCCCCCCeE
Confidence            988877776  9999999998 999999999999999999999999999999999999999987765     45667888


Q ss_pred             EeEeeee
Q 030603          165 IEDCGQL  171 (174)
Q Consensus       165 I~~~g~l  171 (174)
                      |.+..++
T Consensus       151 i~~~~~~  157 (158)
T COG0652         151 ILSVKIV  157 (158)
T ss_pred             Eeeeeee
Confidence            8887765

>KOG0881 consensus Cyclophilin type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=3.9e-46  Score=261.48  Aligned_cols=153  Identities=52%  Similarity=0.856  Sum_probs=144.1

Q ss_pred             CCeEEEEEEECCEeceEEEEEEcCCCChHHHHHHHHHhcCCCCCCCCCccccccCCEEEEeecCceEeeCCCCCCCCCCC
Q 030603            3 NPRVFFDILIGKMNKGRVVMELFADVTPKTAENFRALCTGEKGIGMSGKPLHYKGSTFHRIIPNFMCQGGDFTRGNGTGG   82 (174)
Q Consensus         3 ~p~v~~di~~~~t~~G~i~i~L~~~~aP~~~~nF~~l~~~~~~~~~~g~~~~y~g~~f~ri~~~~~iq~G~~~~~~~~~~   82 (174)
                      -|.|+++     |++|.|++|||-+.||++|+||.+|+       ++|+   |+|+.||||+++|+|||||++ +.+.++
T Consensus         9 ~~~V~Le-----TsmG~i~~ElY~kHaP~TC~NF~eLa-------rrgY---Yn~v~FHRii~DFmiQGGDPT-GTGRGG   72 (164)
T KOG0881|consen    9 PPNVTLE-----TSMGKITLELYWKHAPRTCQNFAELA-------RRGY---YNGVIFHRIIKDFMIQGGDPT-GTGRGG   72 (164)
T ss_pred             CCeEEEe-----ecccceehhhhhhcCcHHHHHHHHHH-------hccc---ccceeeeehhhhheeecCCCC-CCCCCc
Confidence            3677777     99999999999999999999999999       5666   999999999999999999997 789999


Q ss_pred             CcccCCccCCCcc-CCCCCCCeEEEeeecCCCCCcceEEEEccCCCCCCCCceEEEEEEcChHHHHHHHhCCCCC-CCcc
Q 030603           83 ESIYGMKFADENF-KMKHTGPGILSMANAGPNTNGSQFFICTQKTPWLDGKHVVFGKVVDGYSVIKDMEKVGSES-GRTS  160 (174)
Q Consensus        83 ~~~~~~~~~~e~~-~~~~~~~G~v~~~~~~~~~~~s~FfItl~~~~~ld~~~~vfG~V~~G~~vl~~I~~~~~~~-~~P~  160 (174)
                      .+++|..+.+|-. .++|..+|.+|||+.+||+++|||||||++.++||+++++||||+.||+|+.++..+.|++ +||+
T Consensus        73 aSIYG~kF~DEi~~dLkhTGAGILsMANaGPnTNgSQFFiTLAPt~~LDGKHTIFGRV~~Gm~vikr~G~v~Td~~DRPi  152 (164)
T KOG0881|consen   73 ASIYGDKFEDEIHSDLKHTGAGILSMANAGPNTNGSQFFITLAPTQWLDGKHTIFGRVCSGMEVIKRMGMVETDNSDRPI  152 (164)
T ss_pred             cccccchhhhhhhhhhcccchhhhhhhccCCCCCCceEEEEecCccccCCcceeehhhhhhHHHHHhhcceecCCCCCCc
Confidence            9999999999976 7999999999999999999999999999999999999999999999999999999999999 9999


Q ss_pred             cceEEeEeeee
Q 030603          161 QTVVIEDCGQL  171 (174)
Q Consensus       161 ~~i~I~~~g~l  171 (174)
                      .+++|..+-.+
T Consensus       153 ~~~kIika~~~  163 (164)
T KOG0881|consen  153 DEVKIIKAYPS  163 (164)
T ss_pred             cceeeEeeecC
Confidence            99999887543

>cd01927 cyclophilin_WD40 cyclophilin_WD40: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) having a WD40 domain

Probab=100.00  E-value=1.6e-44  Score=267.30  Aligned_cols=143  Identities=51%  Similarity=0.861  Sum_probs=131.8

Q ss_pred             CEeceEEEEEEcCCCChHHHHHHHHHhcCCCCCCCCCccccccCCEEEEeecCceEeeCCCCCCCCCCCCcccCCccCCC
Q 030603           14 KMNKGRVVMELFADVTPKTAENFRALCTGEKGIGMSGKPLHYKGSTFHRIIPNFMCQGGDFTRGNGTGGESIYGMKFADE   93 (174)
Q Consensus        14 ~t~~G~i~i~L~~~~aP~~~~nF~~l~~~~~~~~~~g~~~~y~g~~f~ri~~~~~iq~G~~~~~~~~~~~~~~~~~~~~e   93 (174)
                      .|+.|+|+||||.+.||++|+||++||+.       |   ||+++.|||++|++++|+||+. +++.++.++++.++++|
T Consensus         3 ~T~~G~i~ieL~~~~aP~t~~nF~~L~~~-------g---~Y~~~~f~Rvi~~f~iq~Gd~~-~~g~g~~~~~~~~~~~e   71 (148)
T cd01927           3 HTTKGDIHIRLFPEEAPKTVENFTTHARN-------G---YYNNTIFHRVIKGFMIQTGDPT-GDGTGGESIWGKEFEDE   71 (148)
T ss_pred             EeccccEEEEEeCCCCcHHHHHHHHHhhc-------C---CcCCcEEEEEcCCcEEEecccC-CCCCCCCcccCCccccc
Confidence            48999999999999999999999999953       3   4999999999999999999975 56677777888888888


Q ss_pred             cc-CCCCCCCeEEEeeecCCCCCcceEEEEccCCCCCCCCceEEEEEEcChHHHHHHHhCCCCC-CCcccceEEeE
Q 030603           94 NF-KMKHTGPGILSMANAGPNTNGSQFFICTQKTPWLDGKHVVFGKVVDGYSVIKDMEKVGSES-GRTSQTVVIED  167 (174)
Q Consensus        94 ~~-~~~~~~~G~v~~~~~~~~~~~s~FfItl~~~~~ld~~~~vfG~V~~G~~vl~~I~~~~~~~-~~P~~~i~I~~  167 (174)
                      .. .+.|..+|+|+|++.++++++|||||+++++|+||++|+|||+|++|||+|++|++++++. ++|.++|+|.+
T Consensus        72 ~~~~~~h~~~G~l~ma~~~~~s~~SqFfIt~~~~p~Ldg~~tvFG~V~~G~dvl~~I~~~~~~~~~~P~~~i~I~~  147 (148)
T cd01927          72 FSPSLKHDRPYTLSMANAGPNTNGSQFFITTVATPWLDNKHTVFGRVVKGMDVVQRIENVKTDKNDRPYEDIKIIN  147 (148)
T ss_pred             cccccCcCCCeEEEEeeCCCCCCCceEEEEcCCCcccCCCceEEEEEEcCHHHHHHHHcCCCCCCCCCcCCeEEEe
Confidence            76 7889989999999999999999999999999999999999999999999999999999876 99999999986

This group consists of several hypothetical and putative eukaryotic and bacterial proteins which have a cyclophilin domain and a WD40 domain. Function of the protein is not known.

>cd01921 cyclophilin_RRM cyclophilin_RRM: cyclophilin-type peptidylprolyl cis- trans isomerase domain occuring with a C-terminal RNA recognition motif domain (RRM)

Probab=100.00  E-value=2.2e-44  Score=271.25  Aligned_cols=149  Identities=39%  Similarity=0.662  Sum_probs=131.8

Q ss_pred             CEeceEEEEEEcCCCChHHHHHHHHHhcCCCCCCCCCccccccCCEEEEeecCceEeeCCCCCCCCCCCCcccC------
Q 030603           14 KMNKGRVVMELFADVTPKTAENFRALCTGEKGIGMSGKPLHYKGSTFHRIIPNFMCQGGDFTRGNGTGGESIYG------   87 (174)
Q Consensus        14 ~t~~G~i~i~L~~~~aP~~~~nF~~l~~~~~~~~~~g~~~~y~g~~f~ri~~~~~iq~G~~~~~~~~~~~~~~~------   87 (174)
                      +|+.|+|+||||++.||++|+||++||+.       |   ||+++.|||++|+++||+|++. .++.++.++++      
T Consensus         3 ~Ts~G~i~ieL~~~~aP~t~~nF~~L~~~-------~---~Y~g~~fhrvi~~f~iQgGd~~-~~g~~~~~~~~~~~~~~   71 (166)
T cd01921           3 ETTLGDLVIDLFTDECPLACLNFLKLCKL-------K---YYNFCLFYNVQKDFIAQTGDPT-GTGAGGESIYSQLYGRQ   71 (166)
T ss_pred             EeccCCEEEEEcCCCCCHHHHHHHHHHhc-------C---CcCCCEEEEEeCCceEEECCcC-CCCCCCccccccccccc
Confidence            48999999999999999999999999953       3   4999999999999999999986 45555555543      


Q ss_pred             -CccCCCcc-CCCCCCCeEEEeeecCCCCCcceEEEEccC-CCCCCCCceEEEEEEcChHHHHHHHhCCCCC-CCcccce
Q 030603           88 -MKFADENF-KMKHTGPGILSMANAGPNTNGSQFFICTQK-TPWLDGKHVVFGKVVDGYSVIKDMEKVGSES-GRTSQTV  163 (174)
Q Consensus        88 -~~~~~e~~-~~~~~~~G~v~~~~~~~~~~~s~FfItl~~-~~~ld~~~~vfG~V~~G~~vl~~I~~~~~~~-~~P~~~i  163 (174)
                       ..+.+|.. .++|+.+|+|+|++.++++++|||||++.+ .|+||++|+|||||++|||||++|++++++. ++|.++|
T Consensus        72 ~~~~~~e~~~~~~h~~~G~l~ma~~~~~~~~SQFfIt~~~~~~~Ldg~~tvFG~Vi~G~dvv~~I~~~~~~~~~~P~~~i  151 (166)
T cd01921          72 ARFFEPEILPLLKHSKKGTVSMVNAGDNLNGSQFYITLGENLDYLDGKHTVFGQVVEGFDVLEKINDAIVDDDGRPLKDI  151 (166)
T ss_pred             CcccCcccCCccccCCceEEEEeECCCCCccceEEEEcCCCCcccCCCccEEEEEEcCHHHHHHHHcCCCCCCCCCCCCe
Confidence             24556653 678989999999999999999999999975 7999999999999999999999999999977 9999999


Q ss_pred             EEeEeeeecc
Q 030603          164 VIEDCGQLAE  173 (174)
Q Consensus       164 ~I~~~g~l~~  173 (174)
                      +|.+|++|.|
T Consensus       152 ~I~~~~i~~~  161 (166)
T cd01921         152 RIKHTHILDD  161 (166)
T ss_pred             EEEEEEEECC
Confidence            9999999986

This subfamily of the cyclophilin domain family contains a number of eukaryotic cyclophilins having the RRM domain including the nuclear proteins: human hCyP-57, Arabidopsis thaliana AtCYP59, Caenorhabditis elegans CeCyP-44 and Paramecium tetrurelia Kin241. The Kin241 protein has been shown to have a role in cell morphogenesis.

>cd01922 cyclophilin_SpCYP2_like cyclophilin_SpCYP2_like: cyclophilin 2-like peptidylprolyl cis- trans isomerase (PPIase) domain similar to Schizosaccharomyces pombe cyp-2

Probab=100.00  E-value=4.5e-44  Score=264.23  Aligned_cols=142  Identities=54%  Similarity=0.925  Sum_probs=130.4

Q ss_pred             CEeceEEEEEEcCCCChHHHHHHHHHhcCCCCCCCCCccccccCCEEEEeecCceEeeCCCCCCCCCCCCcccCCccCCC
Q 030603           14 KMNKGRVVMELFADVTPKTAENFRALCTGEKGIGMSGKPLHYKGSTFHRIIPNFMCQGGDFTRGNGTGGESIYGMKFADE   93 (174)
Q Consensus        14 ~t~~G~i~i~L~~~~aP~~~~nF~~l~~~~~~~~~~g~~~~y~g~~f~ri~~~~~iq~G~~~~~~~~~~~~~~~~~~~~e   93 (174)
                      +|+.|+|+||||.+.||++|+||++||+       .|   ||+++.|||++|++++|+|++. +++.++.++++.++++|
T Consensus         3 ~T~~G~i~ieL~~~~aP~t~~nF~~L~~-------~g---~Y~~~~f~Rvi~~f~iq~Gd~~-~~g~~~~~~~~~~~~~e   71 (146)
T cd01922           3 ETTMGEITLELYWNHAPKTCKNFYELAK-------RG---YYNGTIFHRLIKDFMIQGGDPT-GTGRGGASIYGKKFEDE   71 (146)
T ss_pred             EeccccEEEEEcCCCCcHHHHHHHHHHh-------cC---CcCCcEEEEEcCCcEEEecccC-CCCCCcccccCCCcccc
Confidence            4899999999999999999999999994       33   4999999999999999999975 45666777788888888


Q ss_pred             c-cCCCCCCCeEEEeeecCCCCCcceEEEEccCCCCCCCCceEEEEEEcChHHHHHHHhCCCCCCCcccceEEe
Q 030603           94 N-FKMKHTGPGILSMANAGPNTNGSQFFICTQKTPWLDGKHVVFGKVVDGYSVIKDMEKVGSESGRTSQTVVIE  166 (174)
Q Consensus        94 ~-~~~~~~~~G~v~~~~~~~~~~~s~FfItl~~~~~ld~~~~vfG~V~~G~~vl~~I~~~~~~~~~P~~~i~I~  166 (174)
                      . ..++|.++|+|+|++.++++++|||||+++++|+||++|+|||+|++|||||++|++++++.++|.++|+|.
T Consensus        72 ~~~~~~h~~~G~l~ma~~~~~s~~sqFfIt~~~~p~Ld~~~tvFG~V~~G~dvl~~I~~~~~~~~~P~~~I~I~  145 (146)
T cd01922          72 IHPELKHTGAGILSMANAGPNTNGSQFFITLAPTPWLDGKHTIFGRVSKGMKVIENMVEVQTQTDRPIDEVKIL  145 (146)
T ss_pred             cccCcCCCCCeEEEEeeCCCCCCccEEEEEcCCCcccCCCCCEEEEEEcCHHHHHHHHhCCCCCCCcCCCeEEe
Confidence            5 478899999999999999999999999999999999999999999999999999999999888999999996

These proteins bind their respective SNW chromatin binding protein in autologous systems, in a CsA independent manner indicating interaction with a surface outside the PPIase active site. SNW proteins play a basic and broad range role in signaling.

>cd01925 cyclophilin_CeCYP16-like cyclophilin_CeCYP16-like: cyclophilin-type peptidylprolyl cis- trans isomerase) (PPIase) domain similar to Caenorhabditis elegans cyclophilin 16

Probab=100.00  E-value=6.4e-42  Score=258.85  Aligned_cols=148  Identities=40%  Similarity=0.705  Sum_probs=135.6

Q ss_pred             EeceEEEEEEcCCCChHHHHHHHHHhcCCCCCCCCCccccccCCEEEEeecCceEeeCCCCCCCCCCCCcccCCccCCCc
Q 030603           15 MNKGRVVMELFADVTPKTAENFRALCTGEKGIGMSGKPLHYKGSTFHRIIPNFMCQGGDFTRGNGTGGESIYGMKFADEN   94 (174)
Q Consensus        15 t~~G~i~i~L~~~~aP~~~~nF~~l~~~~~~~~~~g~~~~y~g~~f~ri~~~~~iq~G~~~~~~~~~~~~~~~~~~~~e~   94 (174)
                      |++|+|+||||.+.||++|+||++||+.       |   ||+++.|||++|++++|+|++. +++.++.++++..+.+|.
T Consensus        12 Ts~G~i~ieL~~~~~P~t~~nF~~L~~~-------~---~Y~~~~f~Rvi~~f~iQgGd~~-~~g~g~~s~~g~~~~~E~   80 (171)
T cd01925          12 TTAGDIDIELWSKEAPKACRNFIQLCLE-------G---YYDNTIFHRVVPGFIIQGGDPT-GTGTGGESIYGEPFKDEF   80 (171)
T ss_pred             EccccEEEEEeCCCChHHHHHHHHHHhc-------C---CCCCCEEEEEcCCcEEEccccC-CCCccCcccCCCccCccc
Confidence            8999999999999999999999999953       3   4999999999999999999986 567777888888888886


Q ss_pred             c-CCCCCCCeEEEeeecCCCCCcceEEEEccCCCCCCCCceEEEEEE-cChHHHHHHHhCCCCC-CCcccceEEeEeeee
Q 030603           95 F-KMKHTGPGILSMANAGPNTNGSQFFICTQKTPWLDGKHVVFGKVV-DGYSVIKDMEKVGSES-GRTSQTVVIEDCGQL  171 (174)
Q Consensus        95 ~-~~~~~~~G~v~~~~~~~~~~~s~FfItl~~~~~ld~~~~vfG~V~-~G~~vl~~I~~~~~~~-~~P~~~i~I~~~g~l  171 (174)
                      . .+.|+++|+|+|++.++++++|||||++++.|+||++|+|||+|+ ++++++++|++++++. ++|.++|+|.+|+++
T Consensus        81 ~~~~~~~~~G~l~ma~~g~~s~~sqFfIt~~~~~~ldg~~tvFG~V~g~~~~~v~~i~~~~~~~~~~P~~~i~I~~~~i~  160 (171)
T cd01925          81 HSRLRFNRRGLVGMANAGDDSNGSQFFFTLDKADELNNKHTLFGKVTGDTIYNLLKLAEVETDKDERPVYPPKITSVEVL  160 (171)
T ss_pred             ccCcCCCCCcEEEECcCCCCCcccEEEEEcCCCcccCCCceEEEEEEECcHHHHHHHhcCCcCCCCCcCCCeEEEEEEEE
Confidence            5 577899999999999999999999999999999999999999999 4688899999999987 899999999999998


Q ss_pred             cc
Q 030603          172 AE  173 (174)
Q Consensus       172 ~~  173 (174)
                      .+
T Consensus       161 ~~  162 (171)
T cd01925         161 EN  162 (171)
T ss_pred             cC
Confidence            75

C. elegans CeCYP-16, compared to the archetypal cyclophilin Human cyclophilin A has, a reduced peptidylprolyl cis- trans isomerase activity, is cyclosporin insensitive and shows an altered substrate preference favoring, hydrophobic, acidic or amide amino acids. Most members of this subfamily have a glutamate residue in the active site at the position equivalent to a tryptophan (W121 in Human cyclophilin A), which has been shown to be important for cyclophilin binding.

>PRK10903 peptidyl-prolyl cis-trans isomerase A (rotamase A); Provisional

Probab=100.00  E-value=1e-41  Score=261.28  Aligned_cols=151  Identities=32%  Similarity=0.520  Sum_probs=129.3

Q ss_pred             CCeEEEEEEECCEeceEEEEEEcCCCChHHHHHHHHHhcCCCCCCCCCccccccCCEEEEeecCceEeeCCCCCCCCCCC
Q 030603            3 NPRVFFDILIGKMNKGRVVMELFADVTPKTAENFRALCTGEKGIGMSGKPLHYKGSTFHRIIPNFMCQGGDFTRGNGTGG   82 (174)
Q Consensus         3 ~p~v~~di~~~~t~~G~i~i~L~~~~aP~~~~nF~~l~~~~~~~~~~g~~~~y~g~~f~ri~~~~~iq~G~~~~~~~~~~   82 (174)
                      +++|.++     |+.|+|+||||++.||++|+||++||+       .|   ||+++.|||++|+|++|+|++......  
T Consensus        28 ~~~v~l~-----T~~G~i~ieL~~~~aP~t~~NF~~L~~-------~g---~Ydg~~FhRvi~~f~iQgG~~~~~~~~--   90 (190)
T PRK10903         28 DPHVLLT-----TSAGNIELELNSQKAPVSVKNFVDYVN-------SG---FYNNTTFHRVIPGFMIQGGGFTEQMQQ--   90 (190)
T ss_pred             CcEEEEE-----eccccEEEEEeCCCCcHHHHHHHHHHh-------cC---CcCCcEEEEEeCCceEEeCCcCCCCCC--
Confidence            4566555     899999999999999999999999994       34   499999999999999999997643211  


Q ss_pred             CcccCCccCCCccCCCCCCCeEEEeeecC-CCCCcceEEEEccCCCCCCC-----CceEEEEEEcChHHHHHHHhCCCCC
Q 030603           83 ESIYGMKFADENFKMKHTGPGILSMANAG-PNTNGSQFFICTQKTPWLDG-----KHVVFGKVVDGYSVIKDMEKVGSES  156 (174)
Q Consensus        83 ~~~~~~~~~~e~~~~~~~~~G~v~~~~~~-~~~~~s~FfItl~~~~~ld~-----~~~vfG~V~~G~~vl~~I~~~~~~~  156 (174)
                       ...+.++.+|.....|+.+|+|+|++.+ +++++|||||++++.++||+     +|+|||+|++|||||++|++++++.
T Consensus        91 -~~~~~~~~~e~~~~l~~~~G~lama~~~~~~sn~SQFfIt~~~~~~ld~~~~dg~ytvFG~V~eG~dvl~~I~~~~~~~  169 (190)
T PRK10903         91 -KKPNPPIKNEADNGLRNTRGTIAMARTADKDSATSQFFINVADNAFLDHGQRDFGYAVFGKVVKGMDVADKISQVPTHD  169 (190)
T ss_pred             -CCCCCcccCcccccCcCCCcEEEeCCCCCCCCcccEEEEECcCcccccCCccCCCccEEEEEecCHHHHHHHHcCCCCC
Confidence             1224567777666667889999999865 89999999999999999984     8999999999999999999999864


Q ss_pred             -----CCcccceEEeEeeee
Q 030603          157 -----GRTSQTVVIEDCGQL  171 (174)
Q Consensus       157 -----~~P~~~i~I~~~g~l  171 (174)
                           ++|.++|+|.+|+++
T Consensus       170 ~~~~~~~P~~~v~I~~~~v~  189 (190)
T PRK10903        170 VGPYQNVPSKPVVILSAKVL  189 (190)
T ss_pred             CCCCCCcccCCeEEEEEEEe
Confidence                 699999999999986

>PRK10791 peptidyl-prolyl cis-trans isomerase B (rotamase B); Provisional

Probab=100.00  E-value=4.3e-41  Score=252.55  Aligned_cols=145  Identities=31%  Similarity=0.554  Sum_probs=122.8

Q ss_pred             CEeceEEEEEEcCCCChHHHHHHHHHhcCCCCCCCCCccccccCCEEEEeecCceEeeCCCCCCCCCCCCcccCCccCCC
Q 030603           14 KMNKGRVVMELFADVTPKTAENFRALCTGEKGIGMSGKPLHYKGSTFHRIIPNFMCQGGDFTRGNGTGGESIYGMKFADE   93 (174)
Q Consensus        14 ~t~~G~i~i~L~~~~aP~~~~nF~~l~~~~~~~~~~g~~~~y~g~~f~ri~~~~~iq~G~~~~~~~~~~~~~~~~~~~~e   93 (174)
                      .|+.|+|+|+||++.||++|+||++||+       .|   ||+++.||||+|+|+||||++..+...   ...+.++.+|
T Consensus         5 ~T~~G~i~ieL~~~~aP~t~~nF~~L~~-------~g---~Yd~~~fhRvi~~f~iQgGd~~~~~~~---~~~~~~~~~e   71 (164)
T PRK10791          5 HTNHGDIVIKTFDDKAPETVKNFLDYCR-------EG---FYNNTIFHRVINGFMIQGGGFEPGMKQ---KATKEPIKNE   71 (164)
T ss_pred             EEccccEEEEEeCCCCcHHHHHHHHHHh-------cC---CcCCcEEEEEecCcEEEeCCcCCCCCc---CCCCCCcCCc
Confidence            3899999999999999999999999994       33   499999999999999999997543221   1224566777


Q ss_pred             ccCCCCCCCeEEEeeecC-CCCCcceEEEEccCCCCCC-------C-CceEEEEEEcChHHHHHHHhCCCCC-----CCc
Q 030603           94 NFKMKHTGPGILSMANAG-PNTNGSQFFICTQKTPWLD-------G-KHVVFGKVVDGYSVIKDMEKVGSES-----GRT  159 (174)
Q Consensus        94 ~~~~~~~~~G~v~~~~~~-~~~~~s~FfItl~~~~~ld-------~-~~~vfG~V~~G~~vl~~I~~~~~~~-----~~P  159 (174)
                      .....++.+|+|||++.+ +++++|||||++.+.++||       + +|+|||+|++|||||++|++++++.     ++|
T Consensus        72 ~~~~~~~~~G~lsma~~~~p~s~~SQFfI~~~~~~~ld~~~~~~d~~~~tvFG~V~eG~dvl~~I~~~~~~~~~~~~~~P  151 (164)
T PRK10791         72 ANNGLKNTRGTLAMARTQAPHSATAQFFINVVDNDFLNFSGESLQGWGYCVFAEVVEGMDVVDKIKGVATGRSGMHQDVP  151 (164)
T ss_pred             ccccccCCCcEEEECCCCCcCCccceEEEEecCchhhcccccccCCCCccEEEEEecCHHHHHHHHcCcCCCCCccCCCc
Confidence            554455679999999975 9999999999999988776       2 7999999999999999999999875     589


Q ss_pred             ccceEEeEeeee
Q 030603          160 SQTVVIEDCGQL  171 (174)
Q Consensus       160 ~~~i~I~~~g~l  171 (174)
                      ..+|+|.+|.+.
T Consensus       152 ~~~v~I~~~~i~  163 (164)
T PRK10791        152 KEDVIIESVTVS  163 (164)
T ss_pred             CCCeEEEEEEEe
Confidence            999999999764

>KOG0883 consensus Cyclophilin type, U box-containing peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=1.7e-41  Score=275.92  Aligned_cols=154  Identities=46%  Similarity=0.813  Sum_probs=144.9

Q ss_pred             EEEEEEECCEeceEEEEEEcCCCChHHHHHHHHHhcCCCCCCCCCccccccCCEEEEeecCceEeeCCCCCCCCCCCCcc
Q 030603            6 VFFDILIGKMNKGRVVMELFADVTPKTAENFRALCTGEKGIGMSGKPLHYKGSTFHRIIPNFMCQGGDFTRGNGTGGESI   85 (174)
Q Consensus         6 v~~di~~~~t~~G~i~i~L~~~~aP~~~~nF~~l~~~~~~~~~~g~~~~y~g~~f~ri~~~~~iq~G~~~~~~~~~~~~~   85 (174)
                      -|..+.   |+.|.|-|||+.|.+|.+|+||+.||       ..|+   |+|+.|||.+.||||||||++ +.+.|+.++
T Consensus       278 gyvrl~---Tn~G~lNlELhcd~~P~aceNFI~lc-------~~gY---Ynnt~FHRsIrnFmiQGGDPT-GTG~GGeSi  343 (518)
T KOG0883|consen  278 GYVRLV---TNHGPLNLELHCDYAPRACENFITLC-------KNGY---YNNTIFHRSIRNFMIQGGDPT-GTGRGGESI  343 (518)
T ss_pred             ceEEEe---ccCCceeeEeecCcchHHHHHHHHHH-------hccc---ccchHHHHHHHHHeeeCCCCC-CCCCCCccc
Confidence            344444   89999999999999999999999999       4444   999999999999999999997 889999999


Q ss_pred             cCCccCCCcc-CCCCCCCeEEEeeecCCCCCcceEEEEccCCCCCCCCceEEEEEEcChHHHHHHHhCCCCC-CCcccce
Q 030603           86 YGMKFADENF-KMKHTGPGILSMANAGPNTNGSQFFICTQKTPWLDGKHVVFGKVVDGYSVIKDMEKVGSES-GRTSQTV  163 (174)
Q Consensus        86 ~~~~~~~e~~-~~~~~~~G~v~~~~~~~~~~~s~FfItl~~~~~ld~~~~vfG~V~~G~~vl~~I~~~~~~~-~~P~~~i  163 (174)
                      +|.++.||.. .+.|..||+||||++|||++||||||+...+.+||++|++||+|+.|+++|.+|+.+++++ ++|..+|
T Consensus       344 WgKpFkDEf~~~l~H~gRGvlSMANsGpnTNgSQFFItyrsckhLd~KHTIFGrvVGGldtL~amEnve~d~~DrP~e~I  423 (518)
T KOG0883|consen  344 WGKPFKDEFCSNLSHDGRGVLSMANSGPNTNGSQFFITYRSCKHLDNKHTIFGRVVGGLDTLTAMENVETDEKDRPKEEI  423 (518)
T ss_pred             cCCccccccCCCCCcCCcceEeeccCCCCCCCceEEEEecchhhccccceeeeeeeccHHHHHHHhcCCCCCCCCcccce
Confidence            9999999976 8999999999999999999999999999999999999999999999999999999999999 9999999


Q ss_pred             EEeEeeeecc
Q 030603          164 VIEDCGQLAE  173 (174)
Q Consensus       164 ~I~~~g~l~~  173 (174)
                      +|.+.-+..|
T Consensus       424 ~i~~~~VFVd  433 (518)
T KOG0883|consen  424 KIEDAIVFVD  433 (518)
T ss_pred             EEeeeEEeeC
Confidence            9999998875

>cd01920 cyclophilin_EcCYP_like cyclophilin_EcCYP_like: cyclophilin-type A-like peptidylprolyl cis- trans isomerase (PPIase) domain similar to the cytosolic E

Probab=100.00  E-value=3.4e-40  Score=245.84  Aligned_cols=140  Identities=34%  Similarity=0.507  Sum_probs=120.5

Q ss_pred             EeceEEEEEEcCCCChHHHHHHHHHhcCCCCCCCCCccccccCCEEEEeecCceEeeCCCCCCCCCCCCcccCCccCCCc
Q 030603           15 MNKGRVVMELFADVTPKTAENFRALCTGEKGIGMSGKPLHYKGSTFHRIIPNFMCQGGDFTRGNGTGGESIYGMKFADEN   94 (174)
Q Consensus        15 t~~G~i~i~L~~~~aP~~~~nF~~l~~~~~~~~~~g~~~~y~g~~f~ri~~~~~iq~G~~~~~~~~~~~~~~~~~~~~e~   94 (174)
                      |+.|+|+|+||++.||++|+||++||+       .|   ||+++.||||+|++++|+|++......   ...+.++.+|.
T Consensus         4 T~~G~i~ieL~~~~aP~t~~nF~~L~~-------~g---~Yd~~~fhRvi~~f~iQ~Gd~~~~~~~---~~~~~~~~~e~   70 (155)
T cd01920           4 TSLGDIVVELYDDKAPITVENFLAYVR-------KG---FYDNTIFHRVISGFVIQGGGFTPDLAQ---KETLKPIKNEA   70 (155)
T ss_pred             ecceeEEEEEeCCCCcHHHHHHHHHHh-------cC---CCCCCEEEEEeCCcEEEeCCCCCCCCc---cccCCcccCcc
Confidence            899999999999999999999999994       33   499999999999999999997643222   12245566676


Q ss_pred             cCCCCCCCeEEEeeecC-CCCCcceEEEEccCCCCCCC-----CceEEEEEEcChHHHHHHHhCCCCC-----CCcccce
Q 030603           95 FKMKHTGPGILSMANAG-PNTNGSQFFICTQKTPWLDG-----KHVVFGKVVDGYSVIKDMEKVGSES-----GRTSQTV  163 (174)
Q Consensus        95 ~~~~~~~~G~v~~~~~~-~~~~~s~FfItl~~~~~ld~-----~~~vfG~V~~G~~vl~~I~~~~~~~-----~~P~~~i  163 (174)
                      ....|+.+|+|||++.+ +++++|||||++++.|+||.     +|+|||+|++||+||++|++++++.     ++|..+|
T Consensus        71 ~~~~~~~~G~v~ma~~~~~~s~~SqFfI~~~~~~~ld~~~~~~~ytvFG~V~eG~dvl~~I~~~~~~~~~~~~~~p~~~v  150 (155)
T cd01920          71 GNGLSNTRGTIAMARTNAPDSATSQFFINLKDNASLDYQNEQWGYTVFGEVTEGMDVVDKIAGVETYSFGSYQDVPVQDV  150 (155)
T ss_pred             cccccCCceEEEECCCCCCCCccceEEEECCCchhcCCcccCCCccEEEEEecCHHHHHHHHcCCccCCCCcCCCcCCCe
Confidence            66667889999999975 89999999999999999995     7999999999999999999999876     4889899


Q ss_pred             EEeE
Q 030603          164 VIED  167 (174)
Q Consensus       164 ~I~~  167 (174)
                      +|.+
T Consensus       151 ~i~~  154 (155)
T cd01920         151 IIES  154 (155)
T ss_pred             EEEE
Confidence            8875

coli cyclophilin A and Streptomyces antibioticus SanCyp18. Compared to the archetypal cyclophilin Human cyclophilin A, these have reduced affinity for cyclosporin A. E. coli cyclophilin A has a similar peptidylprolyl cis- trans isomerase activity to the human cyclophilin A. Most members of this subfamily contain a phenylalanine residue at the position equivalent to Human cyclophilin W121, where a tyrptophan has been shown to be important for cyclophilin binding.

>PF00160 Pro_isomerase: Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD; InterPro: IPR002130 Cyclophilin [] is the major high-affinity binding protein in vertebrates for the immunosuppressive drug cyclosporin A (CSA), but is also found in other organisms

Probab=100.00  E-value=8.4e-40  Score=243.39  Aligned_cols=151  Identities=48%  Similarity=0.807  Sum_probs=129.2

Q ss_pred             EEEEEECCEeceEEEEEEcCCCChHHHHHHHHHhcCCCCCCCCCccccccCCEEEEeecCceEeeCCCCCCCCCCC-Ccc
Q 030603            7 FFDILIGKMNKGRVVMELFADVTPKTAENFRALCTGEKGIGMSGKPLHYKGSTFHRIIPNFMCQGGDFTRGNGTGG-ESI   85 (174)
Q Consensus         7 ~~di~~~~t~~G~i~i~L~~~~aP~~~~nF~~l~~~~~~~~~~g~~~~y~g~~f~ri~~~~~iq~G~~~~~~~~~~-~~~   85 (174)
                      |++|.+++  .|+|+||||++.||++|+||++||+.+          +|+++.|||++|++++|+|++......+. ...
T Consensus         1 ~~~i~t~~--~G~i~ieL~~~~aP~~~~nF~~l~~~~----------~y~g~~f~ri~~~~~i~~G~~~~~~~~~~~~~~   68 (155)
T PF00160_consen    1 FVDIETSG--LGRIVIELFGDEAPKTVENFLRLCTSG----------FYDGTKFHRIIPNFVIQGGDPTGNGGYGREDST   68 (155)
T ss_dssp             EEEEEETT--EEEEEEEEETTTSHHHHHHHHHHHHTT----------SSTTEBEEEEETTTEEEESSTTTSSSSTSEEBT
T ss_pred             CEEEEeCC--ccCEEEEEeCCCCcHHHHhhehhhccc----------ccCCceeecccccceeeeeeccCCCCccccccc
Confidence            68888544  999999999999999999999999633          49999999999999999999765433111 122


Q ss_pred             cCCccCCCcc-CCCCCCCeEEEeeecC--CCCCcceEEEEccCCCCCCCCceEEEEEEcChHHHHHHHhCCCCCCCcccc
Q 030603           86 YGMKFADENF-KMKHTGPGILSMANAG--PNTNGSQFFICTQKTPWLDGKHVVFGKVVDGYSVIKDMEKVGSESGRTSQT  162 (174)
Q Consensus        86 ~~~~~~~e~~-~~~~~~~G~v~~~~~~--~~~~~s~FfItl~~~~~ld~~~~vfG~V~~G~~vl~~I~~~~~~~~~P~~~  162 (174)
                      .+.++++|.. ...++.+|+|+|++.+  +++++|||||+|++.|++|++|+|||+|++||++|++|++.++++ +|.++
T Consensus        69 ~~~~~~~E~~~~~~~~~~G~v~~~~~~~~~~~~~sqF~I~l~~~~~ld~~~~vfG~V~~G~~vl~~i~~~~~~~-~p~~~  147 (155)
T PF00160_consen   69 GGEPIPDEFNPSLLKHRRGLVSMARSGKDPNSNGSQFFITLSDAPHLDGKYTVFGRVIEGMDVLDKIEAGPTDE-RPKQD  147 (155)
T ss_dssp             TBSCBSSSGBTTSSSSSTTEEEEEBSSSSTTEBSSEEEEESSCGGGGTTTSEEEEEEEEHHHHHHHHHTSBBTT-EBSST
T ss_pred             CccccccccccccccccceeeeecccccCCCCCCceEEeeccCCCccccceeeeeEEehhHHHHHHHHCCCCCC-ccCCC
Confidence            3345777774 4455589999999975  888999999999999999999999999999999999999999988 99999


Q ss_pred             eEEeEeee
Q 030603          163 VVIEDCGQ  170 (174)
Q Consensus       163 i~I~~~g~  170 (174)
                      |+|.+||+
T Consensus       148 v~I~~cgv  155 (155)
T PF00160_consen  148 VTISSCGV  155 (155)
T ss_dssp             EEEEEEEE
T ss_pred             eEEEEeEC
Confidence            99999997

It exhibits a peptidyl-prolyl cis-trans isomerase activity (5.2.1.8 from EC) (PPIase or rotamase). PPIase is an enzyme that accelerates protein folding by catalysing the cis-trans isomerisation of proline imidic peptide bonds in oligopeptides []. It is probable that CSA mediates some of its effects via an forming a tight complex with cyclophilin that inhibits the phosphatase activity of calcineurin [], []. Cyclophilin A is a cytosolic and highly abundant protein. The protein belongs to a family of isozymes, including cyclophilins B and C, and natural killer cell cyclophilin-related protein [, , ]. Major isoforms have been found throughout the cell, including the ER, and some are even secreted. The sequences of the different forms of cyclophilin-type PPIases are well conserved. Note: FKBP's, a family of proteins that bind the immunosuppressive drug FK506, are also PPIases, but their sequence is not at all related to that of cyclophilin (see IPR001179 from INTERPRO).; GO: 0003755 peptidyl-prolyl cis-trans isomerase activity, 0006457 protein folding; PDB: 1Z81_A 1IHG_A 1IIP_A 3PMP_B 3O7T_A 2B71_A 1QNG_A 1QNH_A 2HQJ_A 2RMC_G ....

>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=8.5e-41  Score=276.23  Aligned_cols=149  Identities=48%  Similarity=0.806  Sum_probs=140.5

Q ss_pred             EECCEeceEEEEEEcCCCChHHHHHHHHHhcCCCCCCCCCccccccCCEEEEeecCceEeeCCCCCCCCCCCCcccCCcc
Q 030603           11 LIGKMNKGRVVMELFADVTPKTAENFRALCTGEKGIGMSGKPLHYKGSTFHRIIPNFMCQGGDFTRGNGTGGESIYGMKF   90 (174)
Q Consensus        11 ~~~~t~~G~i~i~L~~~~aP~~~~nF~~l~~~~~~~~~~g~~~~y~g~~f~ri~~~~~iq~G~~~~~~~~~~~~~~~~~~   90 (174)
                      ++--|+.|+|.|.||++.||++|+||...|       +.|+   |+|..||||+++||||+||+. +++.|+.+++|..+
T Consensus       407 aiihtt~gdi~~kl~p~ecpktvenf~th~-------rngy---y~~~~fhriik~fmiqtgdp~-g~gtggesiwg~df  475 (558)
T KOG0882|consen  407 AIIHTTQGDIHIKLYPEECPKTVENFTTHS-------RNGY---YDNHTFHRIIKGFMIQTGDPL-GDGTGGESIWGKDF  475 (558)
T ss_pred             eEEEecccceEEEecccccchhhhhhhccc-------cCcc---ccCcchHHhhhhheeecCCCC-CCCCCCcccccccc
Confidence            334599999999999999999999999999       5555   999999999999999999997 89999999999999


Q ss_pred             CCCcc-CCCCCCCeEEEeeecCCCCCcceEEEEccCCCCCCCCceEEEEEEcChHHHHHHHhCCCCC-CCcccceEEeEe
Q 030603           91 ADENF-KMKHTGPGILSMANAGPNTNGSQFFICTQKTPWLDGKHVVFGKVVDGYSVIKDMEKVGSES-GRTSQTVVIEDC  168 (174)
Q Consensus        91 ~~e~~-~~~~~~~G~v~~~~~~~~~~~s~FfItl~~~~~ld~~~~vfG~V~~G~~vl~~I~~~~~~~-~~P~~~i~I~~~  168 (174)
                      ++|.+ .++|+++.+||||+.|+|++|||||||+-+.|+||++++|||||+.||+|+++|+++.|+. +||.+++.|.+.
T Consensus       476 edefh~~lrhdrpft~smanag~ntngsqffit~~~tpwld~khtvfgrv~~gm~vvqri~~v~t~k~drp~e~v~iini  555 (558)
T KOG0882|consen  476 EDEFHPNLRHDRPFTVSMANAGPNTNGSQFFITTVPTPWLDGKHTVFGRVTAGMDVVQRIEQVKTDKYDRPYEDVKIINI  555 (558)
T ss_pred             hhhcCcccccCCCceEEecccCCCCCCceEEEEecCccccCCcceeEEEEecchhHHhHhhhcccCcCCCCCCceeEEEE
Confidence            99987 8999999999999999999999999999999999999999999999999999999999977 999999999987


Q ss_pred             ee
Q 030603          169 GQ  170 (174)
Q Consensus       169 g~  170 (174)
                      .+
T Consensus       556 sv  557 (558)
T KOG0882|consen  556 SV  557 (558)
T ss_pred             ec
Confidence            54

>KOG0884 consensus Similar to cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=2.9e-40  Score=230.67  Aligned_cols=145  Identities=49%  Similarity=0.754  Sum_probs=137.0

Q ss_pred             EeceEEEEEEcCCCChHHHHHHHHHhcCCCCCCCCCccccccCCEEEEeecCceEeeCCCCCCCCCCCCcccCCccCCCc
Q 030603           15 MNKGRVVMELFADVTPKTAENFRALCTGEKGIGMSGKPLHYKGSTFHRIIPNFMCQGGDFTRGNGTGGESIYGMKFADEN   94 (174)
Q Consensus        15 t~~G~i~i~L~~~~aP~~~~nF~~l~~~~~~~~~~g~~~~y~g~~f~ri~~~~~iq~G~~~~~~~~~~~~~~~~~~~~e~   94 (174)
                      |..|+|-||||.+.+|++|+||+.+|.          ..||++|.|+|-+|+|++|+|++. ..+.++.+++|.++++|.
T Consensus         7 t~~gdikiev~~e~tpktce~~l~~~~----------~~~~n~~~~~~~~~~f~v~~~~~~-~tgrgg~siwg~~fede~   75 (161)
T KOG0884|consen    7 TDVGDIKIEVFCERTPKTCENFLALCA----------SDYYNGCIFHRNIKGFMVQTGDPT-HTGRGGNSIWGKKFEDEY   75 (161)
T ss_pred             eccCcEEEEEEecCChhHHHHHHHHhh----------hhhccceeecCCCCCcEEEeCCCC-CCCCCCccccCCcchHHH
Confidence            788999999999999999999999994          346999999999999999999986 678999999999999998


Q ss_pred             c-CCCCCCCeEEEeeecCCCCCcceEEEEccCCCCCCCCceEEEEEEcChHHHHHHHhCCCCC--CCcccceEEeEeee
Q 030603           95 F-KMKHTGPGILSMANAGPNTNGSQFFICTQKTPWLDGKHVVFGKVVDGYSVIKDMEKVGSES--GRTSQTVVIEDCGQ  170 (174)
Q Consensus        95 ~-~~~~~~~G~v~~~~~~~~~~~s~FfItl~~~~~ld~~~~vfG~V~~G~~vl~~I~~~~~~~--~~P~~~i~I~~~g~  170 (174)
                      . .++|+.||.||||+.||++++||||||.+.+|+||-+|+|||+|++|+|.|++|+.+++++  .||..++.|.+..+
T Consensus        76 ~~~lkh~~rg~vsmanngp~tn~sqffity~kq~hldmkytvfgkvidg~etldele~l~v~~ktyrpl~~~~ik~iti  154 (161)
T KOG0884|consen   76 SEYLKHNVRGVVSMANNGPNTNGSQFFITYGKQPHLDMKYTVFGKVIDGLETLDELEKLPVNEKTYRPLNDVHIKDITI  154 (161)
T ss_pred             HHHHhhccceeEEcccCCCCCCCceEEEEecCCCccceeEeeeeeeccchhhHHHHhhcccCccccccchheeeeeeEE
Confidence            6 6999999999999999999999999999999999999999999999999999999999998  89999999988764

>cd00317 cyclophilin cyclophilin: cyclophilin-type peptidylprolyl cis- trans isomerases

Probab=100.00  E-value=5.8e-39  Score=236.78  Aligned_cols=141  Identities=58%  Similarity=0.944  Sum_probs=125.9

Q ss_pred             EeceEEEEEEcCCCChHHHHHHHHHhcCCCCCCCCCccccccCCEEEEeecCceEeeCCCCCCCCCCCCcccCCccCCCc
Q 030603           15 MNKGRVVMELFADVTPKTAENFRALCTGEKGIGMSGKPLHYKGSTFHRIIPNFMCQGGDFTRGNGTGGESIYGMKFADEN   94 (174)
Q Consensus        15 t~~G~i~i~L~~~~aP~~~~nF~~l~~~~~~~~~~g~~~~y~g~~f~ri~~~~~iq~G~~~~~~~~~~~~~~~~~~~~e~   94 (174)
                      |+.|+|+|+||++.||++|+||++||+++          +|+++.|||++|++++|+|++......+  +.++..+++|.
T Consensus         4 T~~G~i~IeL~~~~~P~~~~nF~~l~~~~----------~Y~~~~f~rv~~~~~iq~Gd~~~~~~~~--~~~~~~~~~E~   71 (146)
T cd00317           4 TTKGRIVIELYGDEAPKTVENFLSLARGG----------FYDGTTFHRVIPGFMIQGGDPTGTGGGG--SGPGYKFPDEN   71 (146)
T ss_pred             eccCcEEEEEcCCCChHHHHHHHHHHhcC----------CcCCCEEEEEeCCCeEEECCCCCCCCCC--CcCCCccCCcc
Confidence            78899999999999999999999999543          4999999999999999999986543322  34466788887


Q ss_pred             cCCC-CCCCeEEEeeecCCCCCcceEEEEccCCCCCCCCceEEEEEEcChHHHHHHHhCCCCC-CCcccceEEeE
Q 030603           95 FKMK-HTGPGILSMANAGPNTNGSQFFICTQKTPWLDGKHVVFGKVVDGYSVIKDMEKVGSES-GRTSQTVVIED  167 (174)
Q Consensus        95 ~~~~-~~~~G~v~~~~~~~~~~~s~FfItl~~~~~ld~~~~vfG~V~~G~~vl~~I~~~~~~~-~~P~~~i~I~~  167 (174)
                      .... |+++|+|+|++.++++++|||||++.+.|+||++|+|||+|++||++|++|++.++++ ++|.++|+|..
T Consensus        72 ~~~~~~~~~G~v~~~~~~~~~~~sqF~Itl~~~~~ld~~~~vfG~V~~G~~vl~~I~~~~~~~~~~P~~~i~I~~  146 (146)
T cd00317          72 FPLKYHHRRGTLSMANAGPNTNGSQFFITTAPTPHLDGKHTVFGKVVEGMDVVDKIERGDTDENGRPIKPVTISD  146 (146)
T ss_pred             ccCcCcCCCcEEEEeeCCCCCcccEEEEECCCCcccCCCceEEEEEeCCHHHHHHHHcCCCCCCCcCcCceEEeC
Confidence            7655 8999999999999999999999999999999999999999999999999999999985 99999999963

This family contains eukaryotic, bacterial and archeal proteins which exhibit a peptidylprolyl cis- trans isomerases activity (PPIase, Rotamase) and in addition bind the immunosuppressive drug cyclosporin (CsA). Immunosuppression in vertebrates is believed to be the result of the cyclophilin A-cyclosporin protein drug complex binding to and inhibiting the protein-phosphatase calcineurin. PPIase is an enzyme which accelerates protein folding by catalyzing the cis-trans isomerization of the peptide bonds preceding proline residues. Cyclophilins are a diverse family in terms of function and have been implicated in protein folding processes which depend on catalytic /chaperone-like activities. This group contains human cyclophilin 40, a co-chaperone of the hsp90 chaperone system; human cyclophilin A, a chaperone in the HIV-1 infectious process and; human cyclophilin H, a component of the U4/U6 snRNP

>KOG0865 consensus Cyclophilin type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=5.2e-40  Score=244.94  Aligned_cols=164  Identities=74%  Similarity=1.258  Sum_probs=157.6

Q ss_pred             CCCCeEEEEEEECCEeceEEEEEEcCCCChHHHHHHHHHhcCCCCCCCCCccccccCCEEEE---eecCceEeeCCCCCC
Q 030603            1 MTNPRVFFDILIGKMNKGRVVMELFADVTPKTAENFRALCTGEKGIGMSGKPLHYKGSTFHR---IIPNFMCQGGDFTRG   77 (174)
Q Consensus         1 ~~~p~v~~di~~~~t~~G~i~i~L~~~~aP~~~~nF~~l~~~~~~~~~~g~~~~y~g~~f~r---i~~~~~iq~G~~~~~   77 (174)
                      |.||+||||+.+++++.|+++++|+.|..|++++||..||++.++.+       |++..|||   .++++++|+||.+..
T Consensus         1 ~~~~~vf~d~~~~~~p~gr~~~~l~ad~~Pktaenf~al~tgekg~~-------yk~s~fhr~~~~~~~fm~qggDft~h   73 (167)
T KOG0865|consen    1 MVNPTVFFDIAIDGEPLGRIVFELFADKIPKTAENFRALCTGEKGFG-------YKGSCFHRLIPIIPGFMCQGGDFTCH   73 (167)
T ss_pred             CCCCeeeeeeeecCccccccceecccccCcchHhhhhhcccCCCccc-------cccchhhhccccccceeeccCccccc
Confidence            78999999999999999999999999999999999999999988776       99999999   345799999999989


Q ss_pred             CCCCCCcccCCccCCCccCCCCCCCeEEEeeecCCCCCcceEEEEccCCCCCCCCceEEEEEEcChHHHHHHHhCCCCCC
Q 030603           78 NGTGGESIYGMKFADENFKMKHTGPGILSMANAGPNTNGSQFFICTQKTPWLDGKHVVFGKVVDGYSVIKDMEKVGSESG  157 (174)
Q Consensus        78 ~~~~~~~~~~~~~~~e~~~~~~~~~G~v~~~~~~~~~~~s~FfItl~~~~~ld~~~~vfG~V~~G~~vl~~I~~~~~~~~  157 (174)
                      ++.++.++++..+.+|++.++|..+|.|+|++.+||+++|||||++....+||++++|||+|.+||+++++++..+..++
T Consensus        74 ngtggkSiy~ekF~DenFilkhtgpGiLSmaNagpntngsqffictaktewLdgkhVVfGkv~eGm~iv~a~e~~gs~~g  153 (167)
T KOG0865|consen   74 NGTGGKSIYGEKFDDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGKVKEGMDIVEAMERFGSRNG  153 (167)
T ss_pred             CCccceEecccccCCcCcEEecCCCCeeehhhcCCCccccEEEEEccccccccCceeEcCceEcccchhhhhhccCCcCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CcccceEEeEeeee
Q 030603          158 RTSQTVVIEDCGQL  171 (174)
Q Consensus       158 ~P~~~i~I~~~g~l  171 (174)
                      +|.++|.|.+||+|
T Consensus       154 k~~~~i~i~dcg~l  167 (167)
T KOG0865|consen  154 KTSKKITIADCGQL  167 (167)
T ss_pred             cccccEEEecCCcC
Confidence            99999999999986

>cd01924 cyclophilin_TLP40_like cyclophilin_TLP40_like: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) similar ot the Spinach thylakoid lumen protein TLP40

Probab=100.00  E-value=7.5e-37  Score=231.92  Aligned_cols=128  Identities=32%  Similarity=0.546  Sum_probs=107.0

Q ss_pred             CEeceEEEEEEcCCCChHHHHHHHHHhcCCCCCCCCCccccccCCEEEEeecCceEeeCCCCCCCC--------------
Q 030603           14 KMNKGRVVMELFADVTPKTAENFRALCTGEKGIGMSGKPLHYKGSTFHRIIPNFMCQGGDFTRGNG--------------   79 (174)
Q Consensus        14 ~t~~G~i~i~L~~~~aP~~~~nF~~l~~~~~~~~~~g~~~~y~g~~f~ri~~~~~iq~G~~~~~~~--------------   79 (174)
                      .|+.|+|+|+||++.||++|+||++||+       .|   ||+++.||||+|+||+|+|++.....              
T Consensus         3 ~T~~G~i~ieL~~~~aP~t~~NF~~L~~-------~g---~Ydg~~FhRVi~~fviQgGdp~~~~~~~~~~~~~~~~~~p   72 (176)
T cd01924           3 ATDNGTITIVLDGYNAPVTAGNFVDLVE-------RG---FYDGMEFHRVEGGFVVQTGDPQGKNPGFPDPETGKSRTIP   72 (176)
T ss_pred             ccccceEEEEEcCCCCCHHHHHHHHHHH-------hC---CcCCCEEEEecCCcEEEecCCCCCCCCccccccccccccc
Confidence            5899999999999999999999999994       33   49999999999999999999863310              


Q ss_pred             ------CCCCcccCCcc-----CCCccCCCCCCCeEEEeeecC--CCCCcceEEEEcc-------CCCCCCCCceEEEEE
Q 030603           80 ------TGGESIYGMKF-----ADENFKMKHTGPGILSMANAG--PNTNGSQFFICTQ-------KTPWLDGKHVVFGKV  139 (174)
Q Consensus        80 ------~~~~~~~~~~~-----~~e~~~~~~~~~G~v~~~~~~--~~~~~s~FfItl~-------~~~~ld~~~~vfG~V  139 (174)
                            ..+.++++..+     .++...++|+.+|+|||++.+  +++++|||||+++       +.|+||++|+|||+|
T Consensus        73 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~laMa~~~~~~ns~~SQFfI~~~~~~~~~~~~~~Ldg~ytVFG~V  152 (176)
T cd01924          73 LEIKPEGQKQPVYGKTLEEAGRYDEQPVLPFNAFGAIAMARTEFDPNSASSQFFFLLKDNELTPSRNNVLDGRYAVFGYV  152 (176)
T ss_pred             ceecccCCCCCccCcccccccccccccccccCCCCeEEEccCCCCCCCccceEEEEeccccccCCCCCccCCCceEEEEE
Confidence                  01122333332     244567888999999999987  6999999999998       789999999999999


Q ss_pred             EcChHHHHHHHh
Q 030603          140 VDGYSVIKDMEK  151 (174)
Q Consensus       140 ~~G~~vl~~I~~  151 (174)
                      ++|||||++|+.
T Consensus       153 veG~dvl~~I~~  164 (176)
T cd01924         153 TDGLDILRELKV  164 (176)
T ss_pred             ecCHHHHHhhcC
Confidence            999999999975

Compared to the archetypal cyclophilin Human cyclophilin A, these proteins have similar peptidylprolyl cis- trans isomerase activity and reduced affinity for cyclosporin A. Spinach TLP40 has been shown to have a dual function as a folding catalyst and regulator of dephosphorylation.

>KOG0885 consensus Peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=3e-36  Score=244.11  Aligned_cols=147  Identities=43%  Similarity=0.751  Sum_probs=139.6

Q ss_pred             EeceEEEEEEcCCCChHHHHHHHHHhcCCCCCCCCCccccccCCEEEEeecCceEeeCCCCCCCCCCCCcccCCccCCCc
Q 030603           15 MNKGRVVMELFADVTPKTAENFRALCTGEKGIGMSGKPLHYKGSTFHRIIPNFMCQGGDFTRGNGTGGESIYGMKFADEN   94 (174)
Q Consensus        15 t~~G~i~i~L~~~~aP~~~~nF~~l~~~~~~~~~~g~~~~y~g~~f~ri~~~~~iq~G~~~~~~~~~~~~~~~~~~~~e~   94 (174)
                      |+.|+|.||||...||++|+||++||       ..|+   |+|+.|||++|+|.+|||+++ +++.|+.+++|.++.+|.
T Consensus        19 TT~G~I~iELW~kE~P~acrnFiqKO-------Gegy---y~nt~fhrlvp~f~~Qggdp~-~~gtGgesiyg~~fadE~   87 (439)
T KOG0885|consen   19 TTKGDIDIELWAKECPKACRNFIQLC-------LEGY---YDNTEFHRLVPGFLVQGGDPT-GTGTGGESIYGRPFADEF   87 (439)
T ss_pred             eccCceeeeehhhhhhHHHHHHHHHH-------Hhcc---ccCceeeeeccchhcccCCCC-CCCCCccccccccchhhc
Confidence            89999999999999999999999999       5665   999999999999999999996 789999999999999998


Q ss_pred             c-CCCCCCCeEEEeeecCCCCCcceEEEEccCCCCCCCCceEEEEEE-cChHHHHHHHhCCCCC-CCcccceEEeEeeee
Q 030603           95 F-KMKHTGPGILSMANAGPNTNGSQFFICTQKTPWLDGKHVVFGKVV-DGYSVIKDMEKVGSES-GRTSQTVVIEDCGQL  171 (174)
Q Consensus        95 ~-~~~~~~~G~v~~~~~~~~~~~s~FfItl~~~~~ld~~~~vfG~V~-~G~~vl~~I~~~~~~~-~~P~~~i~I~~~g~l  171 (174)
                      + ++.+.++|+|+|++.+.+.+|||||+||+++|+|++++++||+|+ ..+-.+-+|..+.++. .||..+-+|.+|.+|
T Consensus        88 h~Rlrf~rrGlvgmana~~~~ngsqFfftl~~~~el~nk~tiFGKVtGdtIYn~lri~e~eida~~Rp~~p~kI~s~EV~  167 (439)
T KOG0885|consen   88 HPRLRFNRRGLVGMANAGNDDNGSQFFFTLGDTPELNNKHTIFGKVTGDTIYNMLRISEVEIDADDRPVDPPKIKSVEVL  167 (439)
T ss_pred             CcceeeeccceeeecccCCCCCCceEEEEecCChHhcccCceeeeecchhhhhhhhhcccccccccCCCCccceeeeEee
Confidence            7 788899999999999999999999999999999999999999999 5888899999999987 999999999999998


Q ss_pred             c
Q 030603          172 A  172 (174)
Q Consensus       172 ~  172 (174)
                      .
T Consensus       168 ~  168 (439)
T KOG0885|consen  168 I  168 (439)
T ss_pred             c
Confidence            5

>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=2.8e-35  Score=237.41  Aligned_cols=149  Identities=40%  Similarity=0.665  Sum_probs=136.3

Q ss_pred             CEeceEEEEEEcCCCChHHHHHHHHHhcCCCCCCCCCccccccCCEEEEeecCceEeeCCCCCCCCCCCCcccCCc----
Q 030603           14 KMNKGRVVMELFADVTPKTAENFRALCTGEKGIGMSGKPLHYKGSTFHRIIPNFMCQGGDFTRGNGTGGESIYGMK----   89 (174)
Q Consensus        14 ~t~~G~i~i~L~~~~aP~~~~nF~~l~~~~~~~~~~g~~~~y~g~~f~ri~~~~~iq~G~~~~~~~~~~~~~~~~~----   89 (174)
                      +|++|+|+|+||-+.+|.+|.||++||          +..||+.|.||.|..+|.+|.|||+ +.+.||.++|+.-    
T Consensus         6 eTtlGDlvIDLf~~erP~~clNFLKLC----------k~KYYN~clfh~vq~~f~aQTGDPt-GtG~GG~si~~~lyG~q   74 (479)
T KOG0415|consen    6 ETTLGDLVIDLFVKERPRTCLNFLKLC----------KIKYYNFCLFHTVQRDFTAQTGDPT-GTGDGGESIYGVLYGEQ   74 (479)
T ss_pred             EeecccEEeeeecccCcHHHHHHHHHH----------hHhhcccceeeeccccceeecCCCC-CCCCCcceeeeeccccc
Confidence            499999999999999999999999999          4558999999999999999999997 6899999888643    


Q ss_pred             ---cCCCc-cCCCCCCCeEEEeeecCCCCCcceEEEEccC-CCCCCCCceEEEEEEcChHHHHHHHhCCCCC-CCcccce
Q 030603           90 ---FADEN-FKMKHTGPGILSMANAGPNTNGSQFFICTQK-TPWLDGKHVVFGKVVDGYSVIKDMEKVGSES-GRTSQTV  163 (174)
Q Consensus        90 ---~~~e~-~~~~~~~~G~v~~~~~~~~~~~s~FfItl~~-~~~ld~~~~vfG~V~~G~~vl~~I~~~~~~~-~~P~~~i  163 (174)
                         +..|. +.+.|.+.|+|||++.|.|..||||||||++ +..||++|+|||+|.+|+|+|.+|+.+-++. ++|+++|
T Consensus        75 ~rffeaE~~p~l~Hsk~G~vsmvs~g~n~~gSQF~iTlgenLdyLDg~htvfGqV~EG~dtl~kiNea~vD~~~rPykdI  154 (479)
T KOG0415|consen   75 ARFFEAEFLPKLKHSKMGTVSMVSAGENLNGSQFFITLGENLDYLDGKHTVFGQVAEGFDTLTKINEAIVDPKNRPYKDI  154 (479)
T ss_pred             chhhhhhhcccccccccceEEeecCCcccccceEEEEccccccccccccceeeehhhhHHHHHHHHHHhcCCCCCcccce
Confidence               34454 4799999999999999999999999999975 5789999999999999999999999988888 9999999


Q ss_pred             EEeEeeeecc
Q 030603          164 VIEDCGQLAE  173 (174)
Q Consensus       164 ~I~~~g~l~~  173 (174)
                      +|.+.-+|+|
T Consensus       155 RI~HTiiLdD  164 (479)
T KOG0415|consen  155 RIKHTIILDD  164 (479)
T ss_pred             eeeeeEEecC
Confidence            9999999987

>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=97.98  E-value=8.4e-06  Score=69.14  Aligned_cols=146  Identities=17%  Similarity=0.214  Sum_probs=111.2

Q ss_pred             Eece----EEEEEEcCCCChHHHHHHHHHhcCCCCCCCCCccccccCCEEEEeecCceEeeCCCCCCCCCCCCccc--CC
Q 030603           15 MNKG----RVVMELFADVTPKTAENFRALCTGEKGIGMSGKPLHYKGSTFHRIIPNFMCQGGDFTRGNGTGGESIY--GM   88 (174)
Q Consensus        15 t~~G----~i~i~L~~~~aP~~~~nF~~l~~~~~~~~~~g~~~~y~g~~f~ri~~~~~iq~G~~~~~~~~~~~~~~--~~   88 (174)
                      +..|    -|.|+|+.+-+|.-++-|...|+          ..++++..|.+|...+++|.||..-....++.--+  +.
T Consensus       105 ~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q----------~~~fkklH~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e  174 (558)
T KOG0882|consen  105 TSKGDKISLIAVSLFKSGKIFVVDGFGDFCQ----------DGYFKKLHFSPVKKIRYNQAGDSAVSIDISGMVEYWSAE  174 (558)
T ss_pred             cCCCCeeeeEEeecccCCCcEEECCcCCcCc----------cceecccccCceEEEEeeccccceeeccccceeEeecCC
Confidence            4556    89999999999999999999993          33599999999999999999986543333332111  11


Q ss_pred             -c--cCC--CccCCCCCCCeEEEeeecCCCCCcceEEEEccCCCCCCCCceEEEEEEcChHHHHHHHhCCCCC-CCcccc
Q 030603           89 -K--FAD--ENFKMKHTGPGILSMANAGPNTNGSQFFICTQKTPWLDGKHVVFGKVVDGYSVIKDMEKVGSES-GRTSQT  162 (174)
Q Consensus        89 -~--~~~--e~~~~~~~~~G~v~~~~~~~~~~~s~FfItl~~~~~ld~~~~vfG~V~~G~~vl~~I~~~~~~~-~~P~~~  162 (174)
                       +  +++  .+..++|. .-++...+......+-+|++.-...+.+..+..|+|++.+|-++++.|....++. ..|+.+
T Consensus       175 ~~~qfPr~~l~~~~K~e-TdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvqeiDE~~t~~~~q~ks~  253 (558)
T KOG0882|consen  175 GPFQFPRTNLNFELKHE-TDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQEIDEVLTDAQYQPKSP  253 (558)
T ss_pred             CcccCcccccccccccc-chhhcccccccCccceEEccccCcccccCcccEEEEEEeccchhhhhhhccchhhhhccccc
Confidence             1  111  22344444 4555555555555677999999999999999999999999999999999999998 889999


Q ss_pred             eEEeEeeee
Q 030603          163 VVIEDCGQL  171 (174)
Q Consensus       163 i~I~~~g~l  171 (174)
                      +.|.+..+.
T Consensus       254 y~l~~Velg  262 (558)
T KOG0882|consen  254 YGLMHVELG  262 (558)
T ss_pred             cccceeehh
Confidence            999887653

>TIGR03268 methan_mark_3 putative methanogenesis marker protein 3

Probab=97.29  E-value=0.0024  Score=55.15  Aligned_cols=102  Identities=24%  Similarity=0.400  Sum_probs=65.2

Q ss_pred             eEEEEEEcCCCChHHHHHHHHHhcCCCCCCCCCccccccCCEEEEeecCceEeeCCCCCCCCCCCCcccCCccCCCccCC
Q 030603           18 GRVVMELFADVTPKTAENFRALCTGEKGIGMSGKPLHYKGSTFHRIIPNFMCQGGDFTRGNGTGGESIYGMKFADENFKM   97 (174)
Q Consensus        18 G~i~i~L~~~~aP~~~~nF~~l~~~~~~~~~~g~~~~y~g~~f~ri~~~~~iq~G~~~~~~~~~~~~~~~~~~~~e~~~~   97 (174)
                      =.+.+||.++ ||.++++|+.+.+       .|.   +   .+.+. .+-+|.           .+...+...+.|+  .
T Consensus       201 Ty~evE~~~~-~p~s~EH~la~~~-------~G~---~---~Vd~~-tsTfi~-----------d~~L~g~~~p~En--~  252 (503)
T TIGR03268       201 TYVEVELDPN-APVSVEHFLALME-------DGT---F---RVDYR-TSTFIS-----------DDSLRGLDKPEEN--I  252 (503)
T ss_pred             EEEEEEEcCC-CChhHHHHHHHHh-------CCe---E---EEeee-ecceEe-----------cccccCccCCccc--c
Confidence            4567788766 8999999999984       332   1   11111 111111           1122233444444  4


Q ss_pred             CCCCCeEEEeeecCCCCCcceEEEEccCCCCCCCCceEEEEEEcChHHHHHHH
Q 030603           98 KHTGPGILSMANAGPNTNGSQFFICTQKTPWLDGKHVVFGKVVDGYSVIKDME  150 (174)
Q Consensus        98 ~~~~~G~v~~~~~~~~~~~s~FfItl~~~~~ld~~~~vfG~V~~G~~vl~~I~  150 (174)
                      ....+|+|.+.+.|.+..  ..||...+.+. .-.|+|+|+|+.|||+++--+
T Consensus       253 ~~R~rGtVTVRn~G~G~G--~VYIYredr~s-s~sHtvVG~V~~GiELid~a~  302 (503)
T TIGR03268       253 EKRRRGAVTVRNSGVGEG--RVYIYREDRPS-SLSHNVVGHVTRGIELIDIAQ  302 (503)
T ss_pred             CcccceeEEEEeeccCce--eEEEEcCCCCC-CcccceeEEEecceeeeeccc
Confidence            445699999999875433  78999877663 246999999999999986443

A single member of this protein family is found in each of the first ten complete genome sequences of archaeal methanogens, and nowhere else. This protein family was detected by the method of partial phylogenetic profiling (see Haft, et al., 2006). The functions of proteins in this family are unknown, but their role is likely one essential to methanogenesis.

>PRK00969 hypothetical protein; Provisional

Probab=97.23  E-value=0.0028  Score=54.88  Aligned_cols=102  Identities=25%  Similarity=0.415  Sum_probs=65.4

Q ss_pred             eEEEEEEcCCCChHHHHHHHHHhcCCCCCCCCCccccccCCEEEEeecCceEeeCCCCCCCCCCCCcccCCccCCCccCC
Q 030603           18 GRVVMELFADVTPKTAENFRALCTGEKGIGMSGKPLHYKGSTFHRIIPNFMCQGGDFTRGNGTGGESIYGMKFADENFKM   97 (174)
Q Consensus        18 G~i~i~L~~~~aP~~~~nF~~l~~~~~~~~~~g~~~~y~g~~f~ri~~~~~iq~G~~~~~~~~~~~~~~~~~~~~e~~~~   97 (174)
                      =.+.++|.++ ||.++++|+.+.+       .|.   +   .+.+. .+-+|.           .+...+...+.|+  .
T Consensus       204 Ty~eve~~~~-~p~s~EH~la~~~-------~G~---f---~Vd~~-tstfI~-----------d~~L~g~~~p~En--~  255 (508)
T PRK00969        204 TYVEVELDPG-APKSVEHFLALLE-------DGT---F---EVDFE-TSTFIA-----------DDRLQGLKIPEEN--F  255 (508)
T ss_pred             EEEEEEEcCC-CCchHHHHHHHHh-------CCe---E---EEeee-ecceEe-----------eccccCccCCccc--c
Confidence            4567788876 8999999999984       332   1   11111 111111           1122233444454  4


Q ss_pred             CCCCCeEEEeeecCCCCCcceEEEEccCCCCCCCCceEEEEEEcChHHHHHHH
Q 030603           98 KHTGPGILSMANAGPNTNGSQFFICTQKTPWLDGKHVVFGKVVDGYSVIKDME  150 (174)
Q Consensus        98 ~~~~~G~v~~~~~~~~~~~s~FfItl~~~~~ld~~~~vfG~V~~G~~vl~~I~  150 (174)
                      ....+|+|++.+.|.+..  ..||...+.+. .-.|+|+|+|+.|||+++--.
T Consensus       256 ~~R~~GtVTVRt~G~g~G--~vYIyredr~s-s~sHtvVG~V~~GiELi~~a~  305 (508)
T PRK00969        256 EPRRRGTVTVRTAGVGVG--KVYIYREDRPS-SLSHTVVGRVTHGIELIDFAK  305 (508)
T ss_pred             CccccceEEEEeeccCce--eEEEECCCCCC-CccceeEEEEecceeeeeccc
Confidence            445699999999875433  78999887663 246999999999999986443

>TIGR03268 methan_mark_3 putative methanogenesis marker protein 3

Probab=96.87  E-value=0.016  Score=50.14  Aligned_cols=115  Identities=17%  Similarity=0.280  Sum_probs=69.2

Q ss_pred             eEEEEEEcCCCChHHHHHHHHHhcCCCCCCCCCccccccCCEEEEeecCceEeeCCCCCCCCCCCCcccCCccCCCccCC
Q 030603           18 GRVVMELFADVTPKTAENFRALCTGEKGIGMSGKPLHYKGSTFHRIIPNFMCQGGDFTRGNGTGGESIYGMKFADENFKM   97 (174)
Q Consensus        18 G~i~i~L~~~~aP~~~~nF~~l~~~~~~~~~~g~~~~y~g~~f~ri~~~~~iq~G~~~~~~~~~~~~~~~~~~~~e~~~~   97 (174)
                      --|.|+||.+.||.++.-|.++.--.. . .-|+      ..+|-..++.++.-|+...          ...+.+|+..-
T Consensus       375 ~vi~IeLydd~AP~s~~yFRk~tGL~~-~-~VG~------L~v~F~~~d~~mFk~~~~~----------~k~LiPEN~P~  436 (503)
T TIGR03268       375 KVIEIELYDDNAPRSVWYFRKFTGLKT-K-PVGR------LPVHFAFKEMIMFKGNKEL----------AKGLIPENTPE  436 (503)
T ss_pred             hEEEEEEcccCCchHHHHHHHhcCCcc-c-ccce------eEEEEEeCCeeEeccCchh----------ccccCCCCCCC
Confidence            468999999999999999998862110 0 1122      3555566765555333321          34466666655


Q ss_pred             CCCCCeEEEeeecCCCCCcceEEEEccCCC-------CCCCCceEEEEEEcChHHHHHHHhC
Q 030603           98 KHTGPGILSMANAGPNTNGSQFFICTQKTP-------WLDGKHVVFGKVVDGYSVIKDMEKV  152 (174)
Q Consensus        98 ~~~~~G~v~~~~~~~~~~~s~FfItl~~~~-------~ld~~~~vfG~V~~G~~vl~~I~~~  152 (174)
                      ....+|.+++-+......| -.=|-|.+..       .+++ --++|+|+++++.|.++..-
T Consensus       437 ~~V~ag~IgvTN~a~k~~G-~IGVRl~d~defGPTGE~F~g-TNIiG~Vv~~~e~Lk~~KeG  496 (503)
T TIGR03268       437 DKVEAGVIGVTNQACKHVG-MIGVRLEDSDEFGPTGEPFSG-TNIIGRVVEGMERLKGLKEG  496 (503)
T ss_pred             CccccceEeeechhhhcCc-eEEEEccCCcccCCCCCCccC-cceEEEecCChhHhcccccC
Confidence            5666888887765321111 1122223322       3443 45789999999999887663

A single member of this protein family is found in each of the first ten complete genome sequences of archaeal methanogens, and nowhere else. This protein family was detected by the method of partial phylogenetic profiling (see Haft, et al., 2006). The functions of proteins in this family are unknown, but their role is likely one essential to methanogenesis.

>COG4070 Predicted peptidyl-prolyl cis-trans isomerase (rotamase), cyclophilin family [Posttranslational modification, protein turnover, chaperones]

Probab=96.79  E-value=0.007  Score=50.98  Aligned_cols=103  Identities=25%  Similarity=0.407  Sum_probs=65.7

Q ss_pred             eEEEEEEcCCCChHHHHHHHHHhcCCCCCCCCCccccccCCEEEEeecCceEeeCCCCCCCCCCCCcccCCccCCCccCC
Q 030603           18 GRVVMELFADVTPKTAENFRALCTGEKGIGMSGKPLHYKGSTFHRIIPNFMCQGGDFTRGNGTGGESIYGMKFADENFKM   97 (174)
Q Consensus        18 G~i~i~L~~~~aP~~~~nF~~l~~~~~~~~~~g~~~~y~g~~f~ri~~~~~iq~G~~~~~~~~~~~~~~~~~~~~e~~~~   97 (174)
                      =.+.++|.++ +|+++++|++|..       +|.       .=.....|.++.           .++....+.+.|+  .
T Consensus       203 Ty~eve~s~n-sP~saEH~lalme-------dG~-------lri~~~tntfis-----------~~~lq~~~~~~en--~  254 (512)
T COG4070         203 TYFEVELSRN-SPKSAEHFLALME-------DGT-------LRIDVTTNTFIS-----------DDTLQEEKVPEEN--F  254 (512)
T ss_pred             EEEEEEeCCC-CchhHHHHHHHhh-------cce-------EEEEEeccceee-----------ccccccccCChhh--h
Confidence            5678888877 8999999999983       332       111122332222           1112233445554  4


Q ss_pred             CCCCCeEEEeeecCCCCCcceEEEEccCCCCCCCCceEEEEEEcChHHHHHHHh
Q 030603           98 KHTGPGILSMANAGPNTNGSQFFICTQKTPWLDGKHVVFGKVVDGYSVIKDMEK  151 (174)
Q Consensus        98 ~~~~~G~v~~~~~~~~~~~s~FfItl~~~~~ld~~~~vfG~V~~G~~vl~~I~~  151 (174)
                      ....+|+++..+.|.++.  .-||.-.+-+. ...|.|+|+|.+||++++--.+
T Consensus       255 d~RerG~iTvRn~GvgeG--rvYIyRedR~s-s~sHnvVGrV~eGiELid~a~e  305 (512)
T COG4070         255 DLRERGAITVRNVGVGEG--RVYIYREDRPS-SLSHNVVGRVIEGIELIDLAEE  305 (512)
T ss_pred             hhhhcceEEEEeeecccc--eEEEEecCCCC-ccccceeeeeecceEEEEeccc
Confidence            445689999998774433  67888766543 2359999999999998875443

>PRK00969 hypothetical protein; Provisional

Probab=96.46  E-value=0.046  Score=47.57  Aligned_cols=114  Identities=17%  Similarity=0.211  Sum_probs=69.6

Q ss_pred             eEEEEEEcCCCChHHHHHHHHHhcCCCCCCCCCccccccCCEEEEeecCceEeeCCCCCCCCCCCCcccCCccCCCccCC
Q 030603           18 GRVVMELFADVTPKTAENFRALCTGEKGIGMSGKPLHYKGSTFHRIIPNFMCQGGDFTRGNGTGGESIYGMKFADENFKM   97 (174)
Q Consensus        18 G~i~i~L~~~~aP~~~~nF~~l~~~~~~~~~~g~~~~y~g~~f~ri~~~~~iq~G~~~~~~~~~~~~~~~~~~~~e~~~~   97 (174)
                      --|.|+||.+.||.++.-|.++.--...  .-|      -..+|-..++.++.-|+...          ...+.+|+..-
T Consensus       378 ~vi~IeLydd~AP~s~~yFR~~tGL~~~--~VG------~L~v~F~~~d~~lFk~~~~~----------~k~liPEN~P~  439 (508)
T PRK00969        378 KLIEIELYDDKAPRTVWYFRKVTGLKTK--PVG------KLPVYFKYEDTYLFKGNIEY----------AKGLLPENTPE  439 (508)
T ss_pred             HEEEEEEcCcCCchHHHHHHHhcCCccc--ccc------eeEEEEEeCCeEEEccChhh----------ccccCCCCCCC
Confidence            4689999999999999999998621100  111      23566667776666444332          34466677666


Q ss_pred             CCCCCeEEEeeecCCCCCcceEEEEccCCC-------CCCCCceEEEEEEcChHHHHHHHhC
Q 030603           98 KHTGPGILSMANAGPNTNGSQFFICTQKTP-------WLDGKHVVFGKVVDGYSVIKDMEKV  152 (174)
Q Consensus        98 ~~~~~G~v~~~~~~~~~~~s~FfItl~~~~-------~ld~~~~vfG~V~~G~~vl~~I~~~  152 (174)
                      ....+|.+++-+......| -.=|-+.+..       .+++ --++|+|+ +++-|.++..-
T Consensus       440 ~~V~ag~IgvTN~a~k~~G-~iGVR~~d~d~fGPTGE~F~g-TNIIGrVv-~~e~Lk~lKeG  498 (508)
T PRK00969        440 DKVKAGEIGVTNMAAKYKG-MIGVRLSDNDEFGPTGEPFEG-TNIIGRVV-NLEKLKKLKEG  498 (508)
T ss_pred             CccccceEeeechhhhcCc-eEEEEccCCcccCCCCCCccC-ceeEEEec-ChHHhcccccC
Confidence            6677888887764321111 1122223322       2333 56899999 89988887663

>PF12903 DUF3830: Protein of unknown function (DUF3830); InterPro: IPR024532 This is a family of bacterial and archaeal proteins

Probab=95.99  E-value=0.053  Score=39.92  Aligned_cols=109  Identities=18%  Similarity=0.186  Sum_probs=54.5

Q ss_pred             eEEEEEEcCCCChHHHHHHHHHhcCCCCCCCCCccccccCCEEEEeecCc--eEeeCCCCCCCCCCCCcccCCccCCCcc
Q 030603           18 GRVVMELFADVTPKTAENFRALCTGEKGIGMSGKPLHYKGSTFHRIIPNF--MCQGGDFTRGNGTGGESIYGMKFADENF   95 (174)
Q Consensus        18 G~i~i~L~~~~aP~~~~nF~~l~~~~~~~~~~g~~~~y~g~~f~ri~~~~--~iq~G~~~~~~~~~~~~~~~~~~~~e~~   95 (174)
                      -.++.+|..|.||+||+.|.+..-             |.+..+|-...+.  |+.-++...           .....||.
T Consensus         8 ~~~~A~l~~d~AP~Tcaa~~~~LP-------------~~~~~~HarwSG~ei~~~l~~~~~-----------~~~~~EN~   63 (147)
T PF12903_consen    8 VSFTARLLDDKAPKTCAAFWEALP-------------LKGKVIHARWSGEEIWIPLPDFDP-----------FEPGRENH   63 (147)
T ss_dssp             EEEEEEE-TTTSHHHHHHHHHH---------------EEEE-EE-SSSSSEEEEEEE--SS-----------S---S-SE
T ss_pred             eEEEEEEcccCChHHHHHHHHhCC-------------CCCcEEEEEEECcEEEEECCCcCc-----------CCCCCCcC
Confidence            378899999999999999999972             5555555555443  444344320           12334544


Q ss_pred             CCCCCCCeEEEee---ecCC--CCC-cceEEEEccCCCC-CCC-----CceEEEEEEcChHHHHHHHh
Q 030603           96 KMKHTGPGILSMA---NAGP--NTN-GSQFFICTQKTPW-LDG-----KHVVFGKVVDGYSVIKDMEK  151 (174)
Q Consensus        96 ~~~~~~~G~v~~~---~~~~--~~~-~s~FfItl~~~~~-ld~-----~~~vfG~V~~G~~vl~~I~~  151 (174)
                      ..... +|-|.+.   ....  +.. -++.=|..+-..- +..     --.+|++|.+|+|-|.++.+
T Consensus        64 T~~P~-pGdi~~~y~~~~~~~~~pg~~~e~~i~yg~g~~~f~~~~G~l~GN~FatI~egle~la~~~~  130 (147)
T PF12903_consen   64 TVTPI-PGDILLYYEPGSAWGGNPGGISETEIFYGYGNLLFASKMGWLPGNHFATITEGLEELAEACR  130 (147)
T ss_dssp             ESS---TTEEEEE-----------E-EEEEEEE-SSS---EETTTEE--EEEEEEEEESHHHHHHHHH
T ss_pred             cccCC-CCcEEEEecCCccccCCCcceEEEEEEEeeCceEecCCccccceeEEEEEcCCHHHHHHHHH
Confidence            44333 6777766   1111  111 1333333332211 111     15799999999997766643

The structure of one of family members, A0JVT3 from SWISSPROT, has been characterised and shown to contain a cyclophilin-like fold.; PDB: 3KOP_B.

>COG4070 Predicted peptidyl-prolyl cis-trans isomerase (rotamase), cyclophilin family [Posttranslational modification, protein turnover, chaperones]

Probab=95.47  E-value=0.063  Score=45.42  Aligned_cols=113  Identities=17%  Similarity=0.250  Sum_probs=61.3

Q ss_pred             EEEEEEcCCCChHHHHHHHHHhcCC-CCCCCCCccccccCCEEEEeecC--ceEeeCCCCCCCCCCCCcccCCccCCCcc
Q 030603           19 RVVMELFADVTPKTAENFRALCTGE-KGIGMSGKPLHYKGSTFHRIIPN--FMCQGGDFTRGNGTGGESIYGMKFADENF   95 (174)
Q Consensus        19 ~i~i~L~~~~aP~~~~nF~~l~~~~-~~~~~~g~~~~y~g~~f~ri~~~--~~iq~G~~~~~~~~~~~~~~~~~~~~e~~   95 (174)
                      -|.||||.+.||.++.-|.++..-. ++   -|+      ..+|-..++  .++.-|+...          +..+.+|+.
T Consensus       377 iieIELyed~APrSv~yFRr~t~l~~kp---VGk------L~Vhfay~d~~~vmfegn~~~----------~K~llPEN~  437 (512)
T COG4070         377 IIEIELYEDRAPRSVWYFRRSTGLKTKP---VGK------LKVHFAYDDTYLVMFEGNAVL----------AKGLLPENT  437 (512)
T ss_pred             EEEEEecCCCCchhhHHHHhhccccccc---ccc------eEEEEEeCCceEEEEcCChHH----------hccCCCCCC
Confidence            5899999999999999999886321 11   222      345555555  2333333221          233444544


Q ss_pred             CCCCCCCeEEEeeecCCCCCcceEEEEccCCC-------CCCCCceEEEEEEcChHHHHHHHhC
Q 030603           96 KMKHTGPGILSMANAGPNTNGSQFFICTQKTP-------WLDGKHVVFGKVVDGYSVIKDMEKV  152 (174)
Q Consensus        96 ~~~~~~~G~v~~~~~~~~~~~s~FfItl~~~~-------~ld~~~~vfG~V~~G~~vl~~I~~~  152 (174)
                      ......+|.++.-+....-.| -.-+-|.+..       .+. .-.++|+|++|.+-|..|...
T Consensus       438 P~d~Ve~g~iGvTN~a~r~~G-mIGVRL~dsdefGPTGE~Fe-~TNiIGrIveg~e~l~~ikeG  499 (512)
T COG4070         438 PADTVEAGEIGVTNQAARHMG-MIGVRLEDSDEFGPTGEKFE-GTNIIGRIVEGPERLIGIKEG  499 (512)
T ss_pred             chhheecccccccccchhccc-eeEEEeccccccCCCCCccc-cceeehhhccChHHhcccccC
Confidence            444444444443332110000 0111222221       232 356899999999999888763

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	174
2hqj_A	183	Cyclophilin From Leishmania Major Length = 183		5e-64
1dyw_A	173	Biochemical And Structural Characterization Of A Di		1e-63
2z6w_A	165	Crystal Structure Of Human Cyclophilin D In Complex		5e-59
2bit_X	165	Crystal Structure Of Human Cyclophilin D At 1.7 A R		1e-58
3r49_A	166	Human Cyclophilin D Complexed With Quinolin-8-Amine		1e-58
3qyu_A	164	Crystal Structure Of Human Cyclophilin D At 1.54 A		1e-58
3rdd_A	184	Human Cyclophilin A Complexed With An Inhibitor Len		3e-58
1qng_A	170	Plasmodium Falciparum Cyclophilin Complexed With Cy		3e-58
2wlw_A	165	Structure Of The N-Terminal Capsid Domain Of Hiv-2		4e-58
1m9e_A	164	X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-		4e-58
2rma_A	165	Crystal Structures Of Cyclophilin A Complexed With		4e-58
2xgy_B	173	Complex Of Rabbit Endogenous Lentivirus (Relik)caps		5e-58
4dgd_A	165	Trimcyp Cyclophilin Domain From Macaca Mulatta: H70		5e-58
3k0o_A	165	Room Temperature Structure Of Cypa Mutant Ser99thr		9e-58
3k0r_A	165	Cryogenic Structure Of Cypa Mutant Arg55lys Length		1e-57
2x2c_K	165	Acetyl-Cypa:cyclosporine Complex Length = 165		1e-57
1bck_A	165	Human Cyclophilin A Complexed With 2-Thr Cyclospori		2e-57
5cyh_A	164	Cyclophilin A Complexed With Dipeptide Gly-Pro Leng		2e-57
2x2a_A	165	Free Acetyl-Cypa Trigonal Form Length = 165		2e-57
2alf_A	164	Crystal Structure Of Human Cypa Mutant K131a Length		5e-57
1qnh_A	170	Plasmodium Falciparum Cyclophilin (Double Mutant) C		6e-57
2x83_B	163	Evolutionary Basis Of Hiv Restriction By The Antire		7e-57
2x25_B	169	Free Acetyl-Cypa Orthorhombic Form Length = 169		8e-57
2ck1_A	172	The Structure Of Oxidised Cyclophilin A From S. Man		7e-56
1aws_A	164	Secypa Complexed With Hagpia (Pseudo-Symmetric Mono		2e-55
2plu_A	186	Crystal Structure Of Cryptosporidium Parvum Cycloph		5e-55
1ihg_A	370	Bovine Cyclophilin 40, Monoclinic Form Length = 370		1e-53
2r99_A	173	Crystal Structure Of Cyclophilin Abh-Like Domain Of		3e-51
1zmf_A	165	C Domain Of Human Cyclophilin-33(Hcyp33) Length = 1		4e-51
1ist_A	162	Crystal Structure Of Yeast Cyclophilin A, Cpr1 Leng		7e-50
3uch_A	174	Crystal Structure Of A Hypotherical Peptidyl-Prolyl		4e-49
2cfe_A	162	The 1.5 A Crystal Structure Of The Malassezia Sympo		2e-47
3pmp_A	164	Crystal Structure Of Cyclophilin A From Moniliophth		5e-47
3o7t_A	164	Crystal Structure Of Cyclophilin A From Moniliophth		2e-46
1qoi_A	177	U4U6 SNRNP-Specific Cyclophilin Snucyp-20 Length =		5e-46
4i9y_A	167	Structure Of The C-terminal Domain Of Nup358 Length		8e-46
1c5f_A	177	Crystal Structure Of The Cyclophilin-Like Domain Fr		2e-43
2gw2_A	198	Crystal Structure Of The Peptidyl-Prolyl Isomerase		2e-43
3k2c_A	193	Crystal Structure Of Peptidyl-Prolyl Cis-Trans Isom		3e-43
2wfj_A	179	Atomic Resolution Crystal Structure Of The Ppiase D		3e-43
2wfi_A	179	Atomic Resolution Crystal Structure Of The Ppiase D		3e-43
3ich_A	188	Crystal Structure Of Cyclophilin B At 1.2 A Resolut		4e-43
1cyn_A	178	Cyclophilin B Complexed With [d-(Cholinylester)ser8		5e-43
4fru_A	185	Crystal Structure Of Horse Wild-Type Cyclophilin B		1e-42
4frv_A	185	Crystal Structure Of Mutated Cyclophilin B That Cau		2e-42
2c3b_A	172	The Crystal Structure Of Aspergillus Fumigatus Cycl		2e-41
2he9_A	192	Structure Of The Peptidylprolyl Isomerase Domain Of		4e-41
2esl_A	190	Human Cyclophilin C In Complex With Cyclosporin A L		5e-41
2rmc_A	182	Crystal Structure Of Murine Cyclophilin C Complexed		7e-41
1h0p_A	182	Cyclophilin_5 From C. Elegans Length = 182		2e-40
1xo7_A	166	Crystal Structure Of Cyclophilin From Trypanosoma C		2e-40
2haq_A	172	Crystal Structure Of Cyclophilin A From Leishmania		2e-39
3bt8_A	172	Crystal Structure Of Mutant Cyclophilin (R147a) Fro		4e-39
1z81_A	229	Crystal Structure Of Cyclophilin From Plasmodium Yo		9e-37
1zkc_A	197	Crystal Structure Of The Cyclophiln_ring Domain Of		2e-25
1xyh_A	161	Crystal Structure Of Recombinant Human Cyclophilin		6e-24
2oju_A	167	X-Ray Structure Of Complex Of Human Cyclophilin J W		6e-24
1xwn_A	174	Solution Structure Of Cyclophilin Like 1(Ppil1) And		7e-23
2x7k_A	166	The Crystal Structure Of Ppil1 In Complex With Cycl		7e-23
2k7n_A	203	Solution Structure Of The Ppil1 Bound To A Fragment		9e-23
2a2n_A	176	Crystal Structure Of The Peptidylprolyl Isomerase D		2e-22
2b71_A	196	Plasmodium Yoelii Cyclophilin-Like Protein Length =		7e-22
2fu0_A	160	Plasmodium Falciparum Cyclophilin Pfe0505w Putative		3e-21
1w74_A	191	X-Ray Structure Of Peptidyl-Prolyl Cis-Trans Isomer		1e-20
2poe_A	185	Crystal Structure Of Cryptosporidium Parvum Cycloph		5e-19
3bo7_A	201	Crystal Structure Of Toxoplasma Gondii Peptidyl-Pro		8e-15
2hq6_A	185	Structure Of The Cyclophilin_cecyp16-like Domain Of		1e-14
3t1u_A	163	Crystal Structure Of The Complex Of Cyclophilin-a E		8e-09
3s6m_A	167	The Structure Of A Peptidyl-Prolyl Cis-Trans Isomer		1e-06
2ose_A	234	Crystal Structure Of The Mimivirus Cyclophilin Leng		9e-06
2nul_A	164	Peptidylprolyl Isomerase From E. Coli Length = 164		9e-06
1lop_A	164	Cyclophilin A Complexed With Succinyl-Ala-Pro-Ala-P		5e-05
3bkp_A	232	Crystal Structure Of The Toxoplasma Gondii Cyclophi		9e-05
1clh_A	166	Three-Dimensional Solution Structure Of Escherichia		2e-04
1j2a_A	166	Structure Of E. Coli Cyclophilin B K163t Mutant Len		3e-04

>pdb|2HQJ|A Chain A, Cyclophilin From Leishmania Major Length = 183

Iteration: 1
 Score =  239 bits (611), Expect = 5e-64,   Method: Compositional matrix adjust.
 Identities = 114/175 (65%), Positives = 130/175 (74%), Gaps = 3/175 (1%)
Query: 1   MTNPRVFFDILIGKMNKGRVVMELFADVTPKTAENFRALCTGEKGIGMSGKPLHYKGSTF 60
           MTNP+VFFDI I     GR+VMEL+AD  PKTAENFRALCTGEKG G SGKPLHYK S F
Sbjct: 5   MTNPKVFFDISIDNKAAGRIVMELYADTVPKTAENFRALCTGEKGKGRSGKPLHYKSSVF 64
Query: 61  HRIIPNFMCQXXXXXXXXXXXXESIYGMKFADENFKMK---HTGPGILSMANAGPNTNGS 117
           HR+IPNFM Q            ESIYG  F DE+F  K   HTG G LSMANAGPNTNGS
Sbjct: 65  HRVIPNFMIQGGDFTRGNGTGGESIYGTTFRDESFSGKAGRHTGLGCLSMANAGPNTNGS 124
Query: 118 QFFICTQKTPWLDGKHVVFGKVVDGYSVIKDMEKVGSESGRTSQTVVIEDCGQLA 172
           QFFICT  TPWLDGKHVVFG+V+DG  V+K +E++GS SG+T   +V+ DCG++A
Sbjct: 125 QFFICTAATPWLDGKHVVFGRVIDGLDVVKKVERLGSSSGKTRSRIVVSDCGEVA 179

>pdb|1DYW|A Chain A, Biochemical And Structural Characterization Of A Divergent Loop Cyclophilin From Caenorhabditis Elegans Length = 173

Iteration: 1
 Score =  238 bits (607), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 115/171 (67%), Positives = 130/171 (76%)
Query: 1   MTNPRVFFDILIGKMNKGRVVMELFADVTPKTAENFRALCTGEKGIGMSGKPLHYKGSTF 60
           M+  +VFFDI IG    GR+VMEL+ DV PKTA NFRALCTGE GIG SGKPLH+KGS F
Sbjct: 1   MSRSKVFFDITIGGKASGRIVMELYDDVVPKTAGNFRALCTGENGIGKSGKPLHFKGSKF 60
Query: 61  HRIIPNFMCQXXXXXXXXXXXXESIYGMKFADENFKMKHTGPGILSMANAGPNTNGSQFF 120
           HRIIPNFM Q            ESIYG KF DENFK KHTGPG+LSMANAGPNTNGSQFF
Sbjct: 61  HRIIPNFMIQGGDFTRGNGTGGESIYGEKFPDENFKEKHTGPGVLSMANAGPNTNGSQFF 120
Query: 121 ICTQKTPWLDGKHVVFGKVVDGYSVIKDMEKVGSESGRTSQTVVIEDCGQL 171
           +CT KT WLDGKHVVFG+VV+G  V+K +E  GS+SG+  +  +I DCGQL
Sbjct: 121 LCTVKTEWLDGKHVVFGRVVEGLDVVKAVESNGSQSGKPVKDCMIADCGQL 171

>pdb|2Z6W|A Chain A, Crystal Structure Of Human Cyclophilin D In Complex With Cyclosporin A Length = 165

Iteration: 1
 Score =  223 bits (567), Expect = 5e-59,   Method: Compositional matrix adjust.
 Identities = 109/172 (63%), Positives = 126/172 (73%), Gaps = 7/172 (4%)
Query: 1   MTNPRVFFDILIGKMNKGRVVMELFADVTPKTAENFRALCTGEKGIGMSGKPLHYKGSTF 60
           M NP V+ D+       GRVV+EL ADV PKTAENFRALCTGEKG G       YKGSTF
Sbjct: 1   MGNPLVYLDVDANGKPLGRVVLELKADVVPKTAENFRALCTGEKGFG-------YKGSTF 53
Query: 61  HRIIPNFMCQXXXXXXXXXXXXESIYGMKFADENFKMKHTGPGILSMANAGPNTNGSQFF 120
           HR+IP+FMCQ            +SIYG +F DENF +KH GPG+LSMANAGPNTNGSQFF
Sbjct: 54  HRVIPSFMCQAGDFTNHNGTGGKSIYGSRFPDENFTLKHVGPGVLSMANAGPNTNGSQFF 113
Query: 121 ICTQKTPWLDGKHVVFGKVVDGYSVIKDMEKVGSESGRTSQTVVIEDCGQLA 172
           ICT KT WLDGKHVVFG V++G  V+K +E  GS+SGRTS+ +VI DCGQL+
Sbjct: 114 ICTIKTDWLDGKHVVFGHVIEGMDVVKKIESFGSKSGRTSKKIVITDCGQLS 165

>pdb|2BIT|X Chain X, Crystal Structure Of Human Cyclophilin D At 1.7 A Resolution Length = 165

Iteration: 1
 Score =  222 bits (565), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 108/170 (63%), Positives = 125/170 (73%), Gaps = 7/170 (4%)
Query: 3   NPRVFFDILIGKMNKGRVVMELFADVTPKTAENFRALCTGEKGIGMSGKPLHYKGSTFHR 62
           NP V+ D+       GRVV+EL ADV PKTAENFRALCTGEKG G       YKGSTFHR
Sbjct: 3   NPLVYLDVDANGKPLGRVVLELKADVVPKTAENFRALCTGEKGFG-------YKGSTFHR 55
Query: 63  IIPNFMCQXXXXXXXXXXXXESIYGMKFADENFKMKHTGPGILSMANAGPNTNGSQFFIC 122
           +IP+FMCQ            +SIYG +F DENF +KH GPG+LSMANAGPNTNGSQFFIC
Sbjct: 56  VIPSFMCQAGDFTNHNGTGGKSIYGSRFPDENFTLKHVGPGVLSMANAGPNTNGSQFFIC 115
Query: 123 TQKTPWLDGKHVVFGKVVDGYSVIKDMEKVGSESGRTSQTVVIEDCGQLA 172
           T KT WLDGKHVVFG V++G  V+K +E  GS+SGRTS+ +VI DCGQL+
Sbjct: 116 TIKTDWLDGKHVVFGHVIEGMDVVKKIESFGSKSGRTSKKIVITDCGQLS 165

>pdb|3R49|A Chain A, Human Cyclophilin D Complexed With Quinolin-8-Amine Length = 166

Iteration: 1
 Score =  221 bits (564), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 108/170 (63%), Positives = 125/170 (73%), Gaps = 7/170 (4%)
Query: 3   NPRVFFDILIGKMNKGRVVMELFADVTPKTAENFRALCTGEKGIGMSGKPLHYKGSTFHR 62
           NP V+ D+       GRVV+EL ADV PKTAENFRALCTGEKG G       YKGSTFHR
Sbjct: 4   NPLVYLDVDANGKPLGRVVLELKADVVPKTAENFRALCTGEKGFG-------YKGSTFHR 56
Query: 63  IIPNFMCQXXXXXXXXXXXXESIYGMKFADENFKMKHTGPGILSMANAGPNTNGSQFFIC 122
           +IP+FMCQ            +SIYG +F DENF +KH GPG+LSMANAGPNTNGSQFFIC
Sbjct: 57  VIPSFMCQAGDFTNHNGTGGKSIYGSRFPDENFTLKHVGPGVLSMANAGPNTNGSQFFIC 116
Query: 123 TQKTPWLDGKHVVFGKVVDGYSVIKDMEKVGSESGRTSQTVVIEDCGQLA 172
           T KT WLDGKHVVFG V++G  V+K +E  GS+SGRTS+ +VI DCGQL+
Sbjct: 117 TIKTDWLDGKHVVFGHVIEGMDVVKKIESFGSKSGRTSKKIVITDCGQLS 166

>pdb|3QYU|A Chain A, Crystal Structure Of Human Cyclophilin D At 1.54 A Resolution At Room Temperature Length = 164

Iteration: 1
 Score =  221 bits (564), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 108/170 (63%), Positives = 125/170 (73%), Gaps = 7/170 (4%)
Query: 3   NPRVFFDILIGKMNKGRVVMELFADVTPKTAENFRALCTGEKGIGMSGKPLHYKGSTFHR 62
           NP V+ D+       GRVV+EL ADV PKTAENFRALCTGEKG G       YKGSTFHR
Sbjct: 2   NPLVYLDVDANGKPLGRVVLELKADVVPKTAENFRALCTGEKGFG-------YKGSTFHR 54
Query: 63  IIPNFMCQXXXXXXXXXXXXESIYGMKFADENFKMKHTGPGILSMANAGPNTNGSQFFIC 122
           +IP+FMCQ            +SIYG +F DENF +KH GPG+LSMANAGPNTNGSQFFIC
Sbjct: 55  VIPSFMCQAGDFTNHNGTGGKSIYGSRFPDENFTLKHVGPGVLSMANAGPNTNGSQFFIC 114
Query: 123 TQKTPWLDGKHVVFGKVVDGYSVIKDMEKVGSESGRTSQTVVIEDCGQLA 172
           T KT WLDGKHVVFG V++G  V+K +E  GS+SGRTS+ +VI DCGQL+
Sbjct: 115 TIKTDWLDGKHVVFGHVIEGMDVVKKIESFGSKSGRTSKKIVITDCGQLS 164

>pdb|3RDD|A Chain A, Human Cyclophilin A Complexed With An Inhibitor Length = 184

Iteration: 1
 Score =  220 bits (560), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 110/171 (64%), Positives = 123/171 (71%), Gaps = 7/171 (4%)
Query: 1   MTNPRVFFDILIGKMNKGRVVMELFADVTPKTAENFRALCTGEKGIGMSGKPLHYKGSTF 60
           M NP VFFDI +     GRV  ELFAD  PKTAENFRAL TGEKG G       YKGS F
Sbjct: 20  MVNPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFG-------YKGSCF 72
Query: 61  HRIIPNFMCQXXXXXXXXXXXXESIYGMKFADENFKMKHTGPGILSMANAGPNTNGSQFF 120
           HRIIP FMCQ            +SIYG KF DENF +KHTGPGILSMANAGPNTNGSQFF
Sbjct: 73  HRIIPGFMCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFF 132
Query: 121 ICTQKTPWLDGKHVVFGKVVDGYSVIKDMEKVGSESGRTSQTVVIEDCGQL 171
           ICT KT WLDGKHVVFGKV +G ++++ ME+ GS +G+TS+ + I DCGQL
Sbjct: 133 ICTAKTEWLDGKHVVFGKVKEGMNIVEAMERFGSRNGKTSKKITIADCGQL 183

>pdb|1QNG|A Chain A, Plasmodium Falciparum Cyclophilin Complexed With Cyclosporin A Length = 170

Iteration: 1
 Score =  220 bits (560), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 105/167 (62%), Positives = 123/167 (73%), Gaps = 1/167 (0%)
Query: 5   RVFFDILIGKMNKGRVVMELFADVTPKTAENFRALCTGEKGIGMSGKPLHYKGSTFHRII 64
           +VFFDI I   N GR++ ELF+D+TP+T ENFRALCTGEK IG  GK LHYK S FHRII
Sbjct: 5   KVFFDISIDNSNAGRIIFELFSDITPRTCENFRALCTGEK-IGSRGKNLHYKNSIFHRII 63
Query: 65  PNFMCQXXXXXXXXXXXXESIYGMKFADENFKMKHTGPGILSMANAGPNTNGSQFFICTQ 124
           P FMCQ            ESIYG  F DENF MKH  PG+LSMANAGPNTN SQFFI   
Sbjct: 64  PQFMCQGGDITNGNGSGGESIYGRSFTDENFNMKHDQPGLLSMANAGPNTNSSQFFITLV 123
Query: 125 KTPWLDGKHVVFGKVVDGYSVIKDMEKVGSESGRTSQTVVIEDCGQL 171
             PWLDGKHVVFGKV++G +V+++MEK G++SG   ++VVI DCG+L
Sbjct: 124 PCPWLDGKHVVFGKVIEGMNVVREMEKEGAKSGYVKRSVVITDCGEL 170

>pdb|2WLW|A Chain A, Structure Of The N-Terminal Capsid Domain Of Hiv-2 Length = 165

Iteration: 1
 Score =  220 bits (560), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 110/171 (64%), Positives = 123/171 (71%), Gaps = 7/171 (4%)
Query: 1   MTNPRVFFDILIGKMNKGRVVMELFADVTPKTAENFRALCTGEKGIGMSGKPLHYKGSTF 60
           M NP VFFDI +     GRV  ELFAD  PKTAENFRAL TGEKG G       YKGS F
Sbjct: 1   MVNPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFG-------YKGSCF 53
Query: 61  HRIIPNFMCQXXXXXXXXXXXXESIYGMKFADENFKMKHTGPGILSMANAGPNTNGSQFF 120
           HRIIP FMCQ            +SIYG KF DENF +KHTGPGILSMANAGPNTNGSQFF
Sbjct: 54  HRIIPGFMCQGGNFTHHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFF 113
Query: 121 ICTQKTPWLDGKHVVFGKVVDGYSVIKDMEKVGSESGRTSQTVVIEDCGQL 171
           ICT KT WLDGKHVVFGKV +G ++++ ME+ GS +G+TS+ + I DCGQL
Sbjct: 114 ICTAKTEWLDGKHVVFGKVKEGMNIVEAMERFGSRNGKTSKKITIADCGQL 164

>pdb|1M9E|A Chain A, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N- Terminal Domain (1-146) M-Type H87a Complex. Length = 164

Iteration: 1
 Score =  220 bits (560), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 110/171 (64%), Positives = 123/171 (71%), Gaps = 7/171 (4%)
Query: 1   MTNPRVFFDILIGKMNKGRVVMELFADVTPKTAENFRALCTGEKGIGMSGKPLHYKGSTF 60
           M NP VFFDI +     GRV  ELFAD  PKTAENFRAL TGEKG G       YKGS F
Sbjct: 1   MVNPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFG-------YKGSCF 53
Query: 61  HRIIPNFMCQXXXXXXXXXXXXESIYGMKFADENFKMKHTGPGILSMANAGPNTNGSQFF 120
           HRIIP FMCQ            +SIYG KF DENF +KHTGPGILSMANAGPNTNGSQFF
Sbjct: 54  HRIIPGFMCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFF 113
Query: 121 ICTQKTPWLDGKHVVFGKVVDGYSVIKDMEKVGSESGRTSQTVVIEDCGQL 171
           ICT KT WLDGKHVVFGKV +G ++++ ME+ GS +G+TS+ + I DCGQL
Sbjct: 114 ICTAKTEWLDGKHVVFGKVKEGMNIVEAMERFGSRNGKTSKKITIADCGQL 164

>pdb|2RMA|A Chain A, Crystal Structures Of Cyclophilin A Complexed With Cyclosporin A And N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine Cyclosporin A Length = 165

Iteration: 1
 Score =  220 bits (560), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 110/171 (64%), Positives = 123/171 (71%), Gaps = 7/171 (4%)
Query: 1   MTNPRVFFDILIGKMNKGRVVMELFADVTPKTAENFRALCTGEKGIGMSGKPLHYKGSTF 60
           M NP VFFDI +     GRV  ELFAD  PKTAENFRAL TGEKG G       YKGS F
Sbjct: 1   MVNPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFG-------YKGSCF 53
Query: 61  HRIIPNFMCQXXXXXXXXXXXXESIYGMKFADENFKMKHTGPGILSMANAGPNTNGSQFF 120
           HRIIP FMCQ            +SIYG KF DENF +KHTGPGILSMANAGPNTNGSQFF
Sbjct: 54  HRIIPGFMCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFF 113
Query: 121 ICTQKTPWLDGKHVVFGKVVDGYSVIKDMEKVGSESGRTSQTVVIEDCGQL 171
           ICT KT WLDGKHVVFGKV +G ++++ ME+ GS +G+TS+ + I DCGQL
Sbjct: 114 ICTAKTEWLDGKHVVFGKVKEGMNIVEAMERFGSRNGKTSKKITIADCGQL 164

>pdb|2XGY|B Chain B, Complex Of Rabbit Endogenous Lentivirus (Relik)capsid With Cyclophilin A Length = 173

Iteration: 1
 Score =  219 bits (559), Expect = 5e-58,   Method: Compositional matrix adjust.
 Identities = 110/171 (64%), Positives = 123/171 (71%), Gaps = 7/171 (4%)
Query: 1   MTNPRVFFDILIGKMNKGRVVMELFADVTPKTAENFRALCTGEKGIGMSGKPLHYKGSTF 60
           M NP VFFDI +     GRV  ELFAD  PKTAENFRAL TGEKG G       YKGS F
Sbjct: 9   MVNPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFG-------YKGSCF 61
Query: 61  HRIIPNFMCQXXXXXXXXXXXXESIYGMKFADENFKMKHTGPGILSMANAGPNTNGSQFF 120
           HRIIP FMCQ            +SIYG KF DENF +KHTGPGILSMANAGPNTNGSQFF
Sbjct: 62  HRIIPGFMCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFF 121
Query: 121 ICTQKTPWLDGKHVVFGKVVDGYSVIKDMEKVGSESGRTSQTVVIEDCGQL 171
           ICT KT WLDGKHVVFGKV +G ++++ ME+ GS +G+TS+ + I DCGQL
Sbjct: 122 ICTAKTEWLDGKHVVFGKVKEGMNIVEAMERFGSRNGKTSKKITIADCGQL 172

>pdb|4DGD|A Chain A, Trimcyp Cyclophilin Domain From Macaca Mulatta: H70c Mutant Length = 165

Iteration: 1
 Score =  219 bits (558), Expect = 5e-58,   Method: Compositional matrix adjust.
 Identities = 110/171 (64%), Positives = 123/171 (71%), Gaps = 7/171 (4%)
Query: 1   MTNPRVFFDILIGKMNKGRVVMELFADVTPKTAENFRALCTGEKGIGMSGKPLHYKGSTF 60
           M NP VFFDI +     GRV  ELFAD  PKTAENFRAL TGEKG G       YKGS F
Sbjct: 1   MVNPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFG-------YKGSCF 53
Query: 61  HRIIPNFMCQXXXXXXXXXXXXESIYGMKFADENFKMKHTGPGILSMANAGPNTNGSQFF 120
           HRIIP FMCQ            +SIYG KF DENF +KHTGPGILSMANAGPNTNGSQFF
Sbjct: 54  HRIIPGFMCQGGNFTHCNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFF 113
Query: 121 ICTQKTPWLDGKHVVFGKVVDGYSVIKDMEKVGSESGRTSQTVVIEDCGQL 171
           ICT KT WLDGKHVVFGKV +G ++++ ME+ GS +G+TS+ + I DCGQL
Sbjct: 114 ICTAKTEWLDGKHVVFGKVKEGMNIVEAMERFGSRNGKTSKKITIADCGQL 164

>pdb|3K0O|A Chain A, Room Temperature Structure Of Cypa Mutant Ser99thr Length = 165

Iteration: 1
 Score =  219 bits (557), Expect = 9e-58,   Method: Compositional matrix adjust.
 Identities = 109/171 (63%), Positives = 123/171 (71%), Gaps = 7/171 (4%)
Query: 1   MTNPRVFFDILIGKMNKGRVVMELFADVTPKTAENFRALCTGEKGIGMSGKPLHYKGSTF 60
           M NP VFFDI +     GRV  ELFAD  PKTAENFRAL TGEKG G       YKGS F
Sbjct: 1   MVNPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFG-------YKGSCF 53
Query: 61  HRIIPNFMCQXXXXXXXXXXXXESIYGMKFADENFKMKHTGPGILSMANAGPNTNGSQFF 120
           HRIIP FMCQ            +SIYG KF DENF +KHTGPGIL+MANAGPNTNGSQFF
Sbjct: 54  HRIIPGFMCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILTMANAGPNTNGSQFF 113
Query: 121 ICTQKTPWLDGKHVVFGKVVDGYSVIKDMEKVGSESGRTSQTVVIEDCGQL 171
           ICT KT WLDGKHVVFGKV +G ++++ ME+ GS +G+TS+ + I DCGQL
Sbjct: 114 ICTAKTEWLDGKHVVFGKVKEGMNIVEAMERFGSRNGKTSKKITIADCGQL 164

>pdb|3K0R|A Chain A, Cryogenic Structure Of Cypa Mutant Arg55lys Length = 165

Iteration: 1
 Score =  218 bits (556), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 109/171 (63%), Positives = 123/171 (71%), Gaps = 7/171 (4%)
Query: 1   MTNPRVFFDILIGKMNKGRVVMELFADVTPKTAENFRALCTGEKGIGMSGKPLHYKGSTF 60
           M NP VFFDI +     GRV  ELFAD  PKTAENFRAL TGEKG G       YKGS F
Sbjct: 1   MVNPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFG-------YKGSCF 53
Query: 61  HRIIPNFMCQXXXXXXXXXXXXESIYGMKFADENFKMKHTGPGILSMANAGPNTNGSQFF 120
           H+IIP FMCQ            +SIYG KF DENF +KHTGPGILSMANAGPNTNGSQFF
Sbjct: 54  HKIIPGFMCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFF 113
Query: 121 ICTQKTPWLDGKHVVFGKVVDGYSVIKDMEKVGSESGRTSQTVVIEDCGQL 171
           ICT KT WLDGKHVVFGKV +G ++++ ME+ GS +G+TS+ + I DCGQL
Sbjct: 114 ICTAKTEWLDGKHVVFGKVKEGMNIVEAMERFGSRNGKTSKKITIADCGQL 164

>pdb|2X2C|K Chain K, Acetyl-Cypa:cyclosporine Complex Length = 165

Iteration: 1
 Score =  218 bits (555), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 109/171 (63%), Positives = 122/171 (71%), Gaps = 7/171 (4%)
Query: 1   MTNPRVFFDILIGKMNKGRVVMELFADVTPKTAENFRALCTGEKGIGMSGKPLHYKGSTF 60
           M NP VFFDI +     GRV  ELFAD  PKTAENFRAL TGEKG G       YKGS F
Sbjct: 1   MVNPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFG-------YKGSCF 53
Query: 61  HRIIPNFMCQXXXXXXXXXXXXESIYGMKFADENFKMKHTGPGILSMANAGPNTNGSQFF 120
           HRIIP FMCQ            +SIYG KF DENF +KHTGPGILSMANAGPNTNGSQFF
Sbjct: 54  HRIIPGFMCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFF 113
Query: 121 ICTQKTPWLDGKHVVFGKVVDGYSVIKDMEKVGSESGRTSQTVVIEDCGQL 171
           ICT KT WLDG HVVFGKV +G ++++ ME+ GS +G+TS+ + I DCGQL
Sbjct: 114 ICTAKTEWLDGXHVVFGKVKEGMNIVEAMERFGSRNGKTSKKITIADCGQL 164

>pdb|1BCK|A Chain A, Human Cyclophilin A Complexed With 2-Thr Cyclosporin Length = 165

Iteration: 1
 Score =  218 bits (555), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 109/169 (64%), Positives = 122/169 (72%), Gaps = 7/169 (4%)
Query: 3   NPRVFFDILIGKMNKGRVVMELFADVTPKTAENFRALCTGEKGIGMSGKPLHYKGSTFHR 62
           NP VFFDI +     GRV  ELFAD  PKTAENFRAL TGEKG G       YKGS FHR
Sbjct: 3   NPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFG-------YKGSCFHR 55
Query: 63  IIPNFMCQXXXXXXXXXXXXESIYGMKFADENFKMKHTGPGILSMANAGPNTNGSQFFIC 122
           IIP FMCQ            +SIYG KF DENF +KHTGPGILSMANAGPNTNGSQFFIC
Sbjct: 56  IIPGFMCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFIC 115
Query: 123 TQKTPWLDGKHVVFGKVVDGYSVIKDMEKVGSESGRTSQTVVIEDCGQL 171
           T KT WLDGKHVVFGKV +G ++++ ME+ GS +G+TS+ + I DCGQL
Sbjct: 116 TAKTEWLDGKHVVFGKVKEGMNIVEAMERFGSRNGKTSKKITIADCGQL 164

>pdb|5CYH|A Chain A, Cyclophilin A Complexed With Dipeptide Gly-Pro Length = 164

Iteration: 1
 Score =  218 bits (555), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 109/169 (64%), Positives = 122/169 (72%), Gaps = 7/169 (4%)
Query: 3   NPRVFFDILIGKMNKGRVVMELFADVTPKTAENFRALCTGEKGIGMSGKPLHYKGSTFHR 62
           NP VFFDI +     GRV  ELFAD  PKTAENFRAL TGEKG G       YKGS FHR
Sbjct: 2   NPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFG-------YKGSCFHR 54
Query: 63  IIPNFMCQXXXXXXXXXXXXESIYGMKFADENFKMKHTGPGILSMANAGPNTNGSQFFIC 122
           IIP FMCQ            +SIYG KF DENF +KHTGPGILSMANAGPNTNGSQFFIC
Sbjct: 55  IIPGFMCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFIC 114
Query: 123 TQKTPWLDGKHVVFGKVVDGYSVIKDMEKVGSESGRTSQTVVIEDCGQL 171
           T KT WLDGKHVVFGKV +G ++++ ME+ GS +G+TS+ + I DCGQL
Sbjct: 115 TAKTEWLDGKHVVFGKVKEGMNIVEAMERFGSRNGKTSKKITIADCGQL 163

>pdb|2X2A|A Chain A, Free Acetyl-Cypa Trigonal Form Length = 165

Iteration: 1
 Score =  218 bits (554), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 109/171 (63%), Positives = 122/171 (71%), Gaps = 7/171 (4%)
Query: 1   MTNPRVFFDILIGKMNKGRVVMELFADVTPKTAENFRALCTGEKGIGMSGKPLHYKGSTF 60
           M NP VFFDI +     GRV  ELFAD  PKTAENFRAL TGEKG G       YKGS F
Sbjct: 1   MVNPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFG-------YKGSCF 53
Query: 61  HRIIPNFMCQXXXXXXXXXXXXESIYGMKFADENFKMKHTGPGILSMANAGPNTNGSQFF 120
           HRIIP FMCQ            +SIYG KF DENF +KHTGPGILSMANAGPNTNGSQFF
Sbjct: 54  HRIIPGFMCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFF 113
Query: 121 ICTQKTPWLDGKHVVFGKVVDGYSVIKDMEKVGSESGRTSQTVVIEDCGQL 171
           ICT KT WLDG HVVFGKV +G ++++ ME+ GS +G+TS+ + I DCGQL
Sbjct: 114 ICTAKTKWLDGXHVVFGKVKEGMNIVEAMERFGSRNGKTSKKITIADCGQL 164

>pdb|2ALF|A Chain A, Crystal Structure Of Human Cypa Mutant K131a Length = 164

Iteration: 1
 Score =  216 bits (550), Expect = 5e-57,   Method: Compositional matrix adjust.
 Identities = 108/169 (63%), Positives = 121/169 (71%), Gaps = 7/169 (4%)
Query: 3   NPRVFFDILIGKMNKGRVVMELFADVTPKTAENFRALCTGEKGIGMSGKPLHYKGSTFHR 62
           NP VFFDI +     GRV  ELFAD  PKTAENFRAL TGEKG G       YKGS FHR
Sbjct: 2   NPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFG-------YKGSCFHR 54
Query: 63  IIPNFMCQXXXXXXXXXXXXESIYGMKFADENFKMKHTGPGILSMANAGPNTNGSQFFIC 122
           IIP FMCQ            +SIYG KF DENF +KHTGPGILSMANAGPNTNGSQFFIC
Sbjct: 55  IIPGFMCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFIC 114
Query: 123 TQKTPWLDGKHVVFGKVVDGYSVIKDMEKVGSESGRTSQTVVIEDCGQL 171
           T KT WLDGKHVVFG V +G ++++ ME+ GS +G+TS+ + I DCGQL
Sbjct: 115 TAKTKWLDGKHVVFGAVKEGMNIVEAMERFGSRNGKTSKKITIADCGQL 163

>pdb|1QNH|A Chain A, Plasmodium Falciparum Cyclophilin (Double Mutant) Complexed With Cyclosporin A Length = 170

Iteration: 1
 Score =  216 bits (550), Expect = 6e-57,   Method: Compositional matrix adjust.
 Identities = 103/166 (62%), Positives = 121/166 (72%), Gaps = 1/166 (0%)
Query: 5   RVFFDILIGKMNKGRVVMELFADVTPKTAENFRALCTGEKGIGMSGKPLHYKGSTFHRII 64
           +VFFDI I   N GR++ ELF+D+TP+T ENFRALCTGEK IG  GK LHYK S FHRII
Sbjct: 5   KVFFDISIDNSNAGRIIFELFSDITPRTCENFRALCTGEK-IGSRGKNLHYKNSIFHRII 63
Query: 65  PNFMCQXXXXXXXXXXXXESIYGMKFADENFKMKHTGPGILSMANAGPNTNGSQFFICTQ 124
           P FMCQ            ESIYG  F DENF MKH  PG+LSMANAGPNTN SQF I   
Sbjct: 64  PQFMCQGGDITNGNGSGGESIYGRSFTDENFNMKHDQPGLLSMANAGPNTNSSQFLITLV 123
Query: 125 KTPWLDGKHVVFGKVVDGYSVIKDMEKVGSESGRTSQTVVIEDCGQ 170
             PWLDGKHVVFGKV++G +V+++MEK G++SG   ++VVI DCG+
Sbjct: 124 PCPWLDGKHVVFGKVIEGMNVVREMEKEGAKSGYVKRSVVITDCGE 169

>pdb|2X83|B Chain B, Evolutionary Basis Of Hiv Restriction By The Antiretroviral Trimcyp Length = 163

Iteration: 1
 Score =  216 bits (549), Expect = 7e-57,   Method: Compositional matrix adjust.
 Identities = 108/169 (63%), Positives = 122/169 (72%), Gaps = 7/169 (4%)
Query: 3   NPRVFFDILIGKMNKGRVVMELFADVTPKTAENFRALCTGEKGIGMSGKPLHYKGSTFHR 62
           NP VFFDI +     GRV  ELFAD  PKTAENFRAL TGEKG G       YKGS FHR
Sbjct: 2   NPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFG-------YKGSCFHR 54
Query: 63  IIPNFMCQXXXXXXXXXXXXESIYGMKFADENFKMKHTGPGILSMANAGPNTNGSQFFIC 122
           IIP FMCQ            +SIYG KF DENF +KHTGPGILSMANAGPNTNGSQFFIC
Sbjct: 55  IIPGFMCQGGDFTHHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFIC 114
Query: 123 TQKTPWLDGKHVVFGKVVDGYSVIKDMEKVGSESGRTSQTVVIEDCGQL 171
           T KT WLDGKHVVFGKV +G ++++ M++ GS +G+TS+ + I DCGQL
Sbjct: 115 TAKTEWLDGKHVVFGKVKEGMNIVEAMKRFGSRNGKTSKKITIADCGQL 163

>pdb|2X25|B Chain B, Free Acetyl-Cypa Orthorhombic Form Length = 169

Iteration: 1
 Score =  216 bits (549), Expect = 8e-57,   Method: Compositional matrix adjust.
 Identities = 108/169 (63%), Positives = 121/169 (71%), Gaps = 7/169 (4%)
Query: 3   NPRVFFDILIGKMNKGRVVMELFADVTPKTAENFRALCTGEKGIGMSGKPLHYKGSTFHR 62
           NP VFFDI +     GRV  ELFAD  PKTAENFRAL TGEKG G       YKGS FHR
Sbjct: 7   NPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFG-------YKGSCFHR 59
Query: 63  IIPNFMCQXXXXXXXXXXXXESIYGMKFADENFKMKHTGPGILSMANAGPNTNGSQFFIC 122
           IIP FMCQ            +SIYG KF DENF +KHTGPGILSMANAGPNTNGSQFFIC
Sbjct: 60  IIPGFMCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFIC 119
Query: 123 TQKTPWLDGKHVVFGKVVDGYSVIKDMEKVGSESGRTSQTVVIEDCGQL 171
           T KT WLDG HVVFGKV +G ++++ ME+ GS +G+TS+ + I DCGQL
Sbjct: 120 TAKTKWLDGXHVVFGKVKEGMNIVEAMERFGSRNGKTSKKITIADCGQL 168

>pdb|2CK1|A Chain A, The Structure Of Oxidised Cyclophilin A From S. Mansoni Length = 172

Iteration: 1
 Score =  213 bits (541), Expect = 7e-56,   Method: Compositional matrix adjust.
 Identities = 101/168 (60%), Positives = 122/168 (72%), Gaps = 7/168 (4%)
Query: 4   PRVFFDILIGKMNKGRVVMELFADVTPKTAENFRALCTGEKGIGMSGKPLHYKGSTFHRI 63
           PRVFFDI IG  + GR+VMEL +D+ P+TAENFRALCTGE+G G       Y    FHR+
Sbjct: 11  PRVFFDIRIGNGDAGRIVMELRSDIVPRTAENFRALCTGERGFG-------YHNCCFHRV 63
Query: 64  IPNFMCQXXXXXXXXXXXXESIYGMKFADENFKMKHTGPGILSMANAGPNTNGSQFFICT 123
           IP FMCQ            +SIYG KF DENF+++H G G+LSMAN+GPNTNGSQFFICT
Sbjct: 64  IPQFMCQGGDFVKGDGTGGKSIYGRKFDDENFQLRHEGFGVLSMANSGPNTNGSQFFICT 123
Query: 124 QKTPWLDGKHVVFGKVVDGYSVIKDMEKVGSESGRTSQTVVIEDCGQL 171
            K  WLDGKHVVFG+VVDG +V+K ME VGS+SG+  + V+I  CG+L
Sbjct: 124 TKCDWLDGKHVVFGRVVDGQNVVKKMESVGSKSGKVKEPVIISRCGEL 171

>pdb|1AWS|A Chain A, Secypa Complexed With Hagpia (Pseudo-Symmetric Monomer) Length = 164

Iteration: 1
 Score =  211 bits (536), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 106/169 (62%), Positives = 119/169 (70%), Gaps = 7/169 (4%)
Query: 3   NPRVFFDILIGKMNKGRVVMELFADVTPKTAENFRALCTGEKGIGMSGKPLHYKGSTFHR 62
           NP VFFDI +     GRV  ELFAD  PKTAENFRAL TGEKG G       YKGS FHR
Sbjct: 2   NPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFG-------YKGSCFHR 54
Query: 63  IIPNFMCQXXXXXXXXXXXXESIYGMKFADENFKMKHTGPGILSMANAGPNTNGSQFFIC 122
           IIP F CQ            +SIYG KF DENF +KHTGPGILS ANAGPNTNGSQFFIC
Sbjct: 55  IIPGFXCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSXANAGPNTNGSQFFIC 114
Query: 123 TQKTPWLDGKHVVFGKVVDGYSVIKDMEKVGSESGRTSQTVVIEDCGQL 171
           T KT WLDGKHVVFGKV +G ++++  E+ GS +G+TS+ + I DCGQL
Sbjct: 115 TAKTEWLDGKHVVFGKVKEGXNIVEAXERFGSRNGKTSKKITIADCGQL 163

>pdb|2PLU|A Chain A, Crystal Structure Of Cryptosporidium Parvum Cyclophilin Type Peptidyl-Prolyl Cis-Trans Isomerase Cgd2_4120 Length = 186

Iteration: 1
 Score =  209 bits (533), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 104/167 (62%), Positives = 119/167 (71%)
Query: 3   NPRVFFDILIGKMNKGRVVMELFADVTPKTAENFRALCTGEKGIGMSGKPLHYKGSTFHR 62
           NP V+FDI IG+   GR+ MELFAD  P TAENFRALCTGEKG+G SGKPL Y GS FHR
Sbjct: 19  NPVVYFDISIGQTPAGRITMELFADKVPITAENFRALCTGEKGMGQSGKPLCYTGSFFHR 78
Query: 63  IIPNFMCQXXXXXXXXXXXXESIYGMKFADENFKMKHTGPGILSMANAGPNTNGSQFFIC 122
           IIP FM Q            ESIYG KF DENF   H  P +LSMANAGPNTNGSQFFI 
Sbjct: 79  IIPQFMIQGGDFTRGDGTGGESIYGSKFRDENFVYTHDAPFLLSMANAGPNTNGSQFFIT 138
Query: 123 TQKTPWLDGKHVVFGKVVDGYSVIKDMEKVGSESGRTSQTVVIEDCG 169
           T   PWLDGKHVVFGKV++G  V+K +EK GS++G+ +++V I   G
Sbjct: 139 TVPCPWLDGKHVVFGKVLEGMEVVKSIEKCGSQNGKPTKSVCITASG 185

>pdb|1IHG|A Chain A, Bovine Cyclophilin 40, Monoclinic Form Length = 370

Iteration: 1
 Score =  205 bits (522), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 104/173 (60%), Positives = 121/173 (69%), Gaps = 1/173 (0%)
Query: 2   TNPRVFFDILIGKMNKGRVVMELFADVTPKTAENFRALCTGEKGIG-MSGKPLHYKGSTF 60
           +NPRVFFD+ IG    GR+V+ELFAD+ PKTAENFRALCTGEKGIG  +GKPLH+KG  F
Sbjct: 14  SNPRVFFDVDIGGERVGRIVLELFADIVPKTAENFRALCTGEKGIGPTTGKPLHFKGCPF 73
Query: 61  HRIIPNFMCQXXXXXXXXXXXXESIYGMKFADENFKMKHTGPGILSMANAGPNTNGSQFF 120
           HRII  FM Q            ESIYG KF DENF  KH   G+LSMANAG NTNGSQFF
Sbjct: 74  HRIIKKFMIQGGDFSNQNGTGGESIYGEKFEDENFHYKHDKEGLLSMANAGSNTNGSQFF 133
Query: 121 ICTQKTPWLDGKHVVFGKVVDGYSVIKDMEKVGSESGRTSQTVVIEDCGQLAE 173
           I T  TP LDGKHVVFG+V+ G  V K +E V  +  + ++  VI +CG+L E
Sbjct: 134 ITTVPTPHLDGKHVVFGQVIKGMGVAKILENVEVKGEKPAKLCVIAECGELKE 186

>pdb|2R99|A Chain A, Crystal Structure Of Cyclophilin Abh-Like Domain Of Human Peptidylprolyl Isomerase E Isoform 1 Length = 173

Iteration: 1
 Score =  197 bits (500), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 96/169 (56%), Positives = 117/169 (69%), Gaps = 7/169 (4%)
Query: 2   TNPRVFFDILIGKMNKGRVVMELFADVTPKTAENFRALCTGEKGIGMSGKPLHYKGSTFH 61
           +NP+V+ DI IG    GR+ M L +DV P TAENFR LCT EKG G       +KGS+FH
Sbjct: 10  SNPQVYMDIKIGNKPAGRIQMLLRSDVVPMTAENFRCLCTHEKGFG-------FKGSSFH 62
Query: 62  RIIPNFMCQXXXXXXXXXXXXESIYGMKFADENFKMKHTGPGILSMANAGPNTNGSQFFI 121
           RIIP FMCQ            +SIYG KF DENF +KHTGPG+LSMAN+GPNTNGSQFF+
Sbjct: 63  RIIPQFMCQGGDFTNHNGTGGKSIYGKKFDDENFILKHTGPGLLSMANSGPNTNGSQFFL 122
Query: 122 CTQKTPWLDGKHVVFGKVVDGYSVIKDMEKVGSESGRTSQTVVIEDCGQ 170
              KT WLDGKHVVFG+V +G  V++ +E  GS+ G+  Q V+I DCG+
Sbjct: 123 TCDKTDWLDGKHVVFGEVTEGLDVLRQIEAQGSKDGKPKQKVIIADCGE 171

>pdb|1ZMF|A Chain A, C Domain Of Human Cyclophilin-33(Hcyp33) Length = 165

Iteration: 1
 Score =  197 bits (500), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 96/169 (56%), Positives = 117/169 (69%), Gaps = 7/169 (4%)
Query: 2   TNPRVFFDILIGKMNKGRVVMELFADVTPKTAENFRALCTGEKGIGMSGKPLHYKGSTFH 61
           +NP+V+ DI IG    GR+ M L +DV P TAENFR LCT EKG G       +KGS+FH
Sbjct: 2   SNPQVYMDIKIGNKPAGRIQMLLRSDVVPMTAENFRCLCTHEKGFG-------FKGSSFH 54
Query: 62  RIIPNFMCQXXXXXXXXXXXXESIYGMKFADENFKMKHTGPGILSMANAGPNTNGSQFFI 121
           RIIP FMCQ            +SIYG KF DENF +KHTGPG+LSMAN+GPNTNGSQFF+
Sbjct: 55  RIIPQFMCQGGDFTNHNGTGGKSIYGKKFDDENFILKHTGPGLLSMANSGPNTNGSQFFL 114
Query: 122 CTQKTPWLDGKHVVFGKVVDGYSVIKDMEKVGSESGRTSQTVVIEDCGQ 170
              KT WLDGKHVVFG+V +G  V++ +E  GS+ G+  Q V+I DCG+
Sbjct: 115 TCDKTDWLDGKHVVFGEVTEGLDVLRQIEAQGSKDGKPKQKVIIADCGE 163

>pdb|1IST|A Chain A, Crystal Structure Of Yeast Cyclophilin A, Cpr1 Length = 162

Iteration: 1
 Score =  192 bits (489), Expect = 7e-50,   Method: Compositional matrix adjust.
 Identities = 95/167 (56%), Positives = 113/167 (67%), Gaps = 7/167 (4%)
Query: 5   RVFFDILIGKMNKGRVVMELFADVTPKTAENFRALCTGEKGIGMSGKPLHYKGSTFHRII 64
           +V+FD+       GRVV +L+ D+ PKTAENFRALCTGEKG G       Y GS FHR+I
Sbjct: 3   QVYFDVEADGQPIGRVVFKLYNDIVPKTAENFRALCTGEKGFG-------YAGSPFHRVI 55
Query: 65  PNFMCQXXXXXXXXXXXXESIYGMKFADENFKMKHTGPGILSMANAGPNTNGSQFFICTQ 124
           P+FM Q            +SIYG KF DENFK  H  PG+LSMANAGPNTNGSQFFI T 
Sbjct: 56  PDFMLQGGDFTAGNGTGGKSIYGGKFPDENFKKHHDRPGLLSMANAGPNTNGSQFFITTV 115
Query: 125 KTPWLDGKHVVFGKVVDGYSVIKDMEKVGSESGRTSQTVVIEDCGQL 171
             PWLDGKHVVFG+VVDGY ++K +E +GS SG T   +V+   G+L
Sbjct: 116 PCPWLDGKHVVFGEVVDGYDIVKKVESLGSPSGATKARIVVAKSGEL 162

>pdb|3UCH|A Chain A, Crystal Structure Of A Hypotherical Peptidyl-Prolyl Cis-Trans Isomerase E (Ppie) From Homo Sapiens At 2.50 A Resolution Length = 174

Iteration: 1
 Score =  190 bits (482), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 93/169 (55%), Positives = 114/169 (67%), Gaps = 7/169 (4%)
Query: 2   TNPRVFFDILIGKMNKGRVVMELFADVTPKTAENFRALCTGEKGIGMSGKPLHYKGSTFH 61
           +NP+V+ DI IG    GR+   L +DV P TAENFR LCT EKG G       +KGS+FH
Sbjct: 11  SNPQVYXDIKIGNKPAGRIQXLLRSDVVPXTAENFRCLCTHEKGFG-------FKGSSFH 63
Query: 62  RIIPNFMCQXXXXXXXXXXXXESIYGMKFADENFKMKHTGPGILSMANAGPNTNGSQFFI 121
           RIIP F CQ            +SIYG KF DENF +KHTGPG+LS AN+GPNTNGSQFF+
Sbjct: 64  RIIPQFXCQGGDFTNHNGTGGKSIYGKKFDDENFILKHTGPGLLSXANSGPNTNGSQFFL 123
Query: 122 CTQKTPWLDGKHVVFGKVVDGYSVIKDMEKVGSESGRTSQTVVIEDCGQ 170
              KT WLDGKHVVFG+V +G  V++ +E  GS+ G+  Q V+I DCG+
Sbjct: 124 TCDKTDWLDGKHVVFGEVTEGLDVLRQIEAQGSKDGKPKQKVIIADCGE 172

>pdb|2CFE|A Chain A, The 1.5 A Crystal Structure Of The Malassezia Sympodialis Mala S 6 Allergen, A Member Of The Cyclophilin Pan- Allergen Family Length = 162

Iteration: 1
 Score =  184 bits (467), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 94/165 (56%), Positives = 109/165 (66%), Gaps = 7/165 (4%)
Query: 5   RVFFDILIGKMNKGRVVMELFADVTPKTAENFRALCTGEKGIGMSGKPLHYKGSTFHRII 64
            VFFDI       G +  +LF DV PKTA NFRALCTGEKG G       Y GS FHR+I
Sbjct: 3   NVFFDITKNGAPLGTIKFKLFDDVVPKTAANFRALCTGEKGFG-------YAGSHFHRVI 55
Query: 65  PNFMCQXXXXXXXXXXXXESIYGMKFADENFKMKHTGPGILSMANAGPNTNGSQFFICTQ 124
           P+FM Q            +SIYG KFADENF++KH  PG+LSMANAGPNTNGSQFFI T 
Sbjct: 56  PDFMLQGGDFTAGNGTGGKSIYGAKFADENFQLKHNKPGLLSMANAGPNTNGSQFFITTV 115
Query: 125 KTPWLDGKHVVFGKVVDGYSVIKDMEKVGSESGRTSQTVVIEDCG 169
            T WLDGKHVVFG+V+DG +V+K +E  GS SG+    + I  CG
Sbjct: 116 VTSWLDGKHVVFGEVIDGMNVVKAIEAEGSGSGKPRSRIEIAKCG 160

>pdb|3PMP|A Chain A, Crystal Structure Of Cyclophilin A From Moniliophthora Perniciosa In Complex With Cyclosporin A Length = 164

Iteration: 1
 Score =  183 bits (464), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 90/167 (53%), Positives = 114/167 (68%), Gaps = 7/167 (4%)
Query: 6   VFFDILIGKMNKGRVVMELFADVTPKTAENFRALCTGEKGIGMSGKPLHYKGSTFHRIIP 65
           VFF+I I    +GR+V +L+ +  PKTA+NFR L TG+ G G       YK S FHR+IP
Sbjct: 5   VFFNISINDKPEGRIVFKLYDEAVPKTAKNFRELATGQHGFG-------YKDSIFHRVIP 57
Query: 66  NFMCQXXXXXXXXXXXXESIYGMKFADENFKMKHTGPGILSMANAGPNTNGSQFFICTQK 125
            FM Q            +SIYG KFADENF++KHT PG+LSMANAG NTNGSQFFI T  
Sbjct: 58  QFMLQGGDFTRHNGTGGKSIYGEKFADENFQVKHTKPGLLSMANAGANTNGSQFFITTVP 117
Query: 126 TPWLDGKHVVFGKVVDGYSVIKDMEKVGSESGRTSQTVVIEDCGQLA 172
           T WLDGKHVVFG+V++G  +++ +E  GS SG+T+ T+ I DCG +A
Sbjct: 118 TSWLDGKHVVFGEVIEGLDIVRKVEGKGSASGKTNATIKITDCGTVA 164

>pdb|3O7T|A Chain A, Crystal Structure Of Cyclophilin A From Moniliophthora Perniciosa Length = 164

Iteration: 1
 Score =  181 bits (460), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 89/166 (53%), Positives = 113/166 (68%), Gaps = 7/166 (4%)
Query: 6   VFFDILIGKMNKGRVVMELFADVTPKTAENFRALCTGEKGIGMSGKPLHYKGSTFHRIIP 65
           VFF+I I    +GR+V +L+ +  PKTA+NFR L TG+ G G       YK S FHR+IP
Sbjct: 6   VFFNISINDKPEGRIVFKLYDEAVPKTAKNFRELATGQHGFG-------YKDSIFHRVIP 58
Query: 66  NFMCQXXXXXXXXXXXXESIYGMKFADENFKMKHTGPGILSMANAGPNTNGSQFFICTQK 125
            FM Q            +SIYG KFADENF++KHT PG+LSMANAG NTNGSQFFI T  
Sbjct: 59  QFMLQGGDFTRHNGTGGKSIYGEKFADENFQVKHTKPGLLSMANAGANTNGSQFFITTVP 118
Query: 126 TPWLDGKHVVFGKVVDGYSVIKDMEKVGSESGRTSQTVVIEDCGQL 171
           T WLDGKHVVFG+V++G  +++ +E  GS SG+T+ T+ I DCG +
Sbjct: 119 TSWLDGKHVVFGEVIEGLDIVRKVEGKGSASGKTNATIKITDCGTV 164

>pdb|1QOI|A Chain A, U4U6 SNRNP-Specific Cyclophilin Snucyp-20 Length = 177

Iteration: 1
 Score =  179 bits (455), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 91/171 (53%), Positives = 113/171 (66%), Gaps = 3/171 (1%)
Query: 2   TNPRVFFDILIGKMNKGRVVMELFADVTPKTAENFRALCTGEKGIGMSGKPLHYKGSTFH 61
            NP VFFD+ IG    GR+ +ELFADV PKTAENFR  CTGE      G P+ YKGSTFH
Sbjct: 9   VNPVVFFDVSIGGQEVGRMKIELFADVVPKTAENFRQFCTGE--FRKDGVPIGYKGSTFH 66
Query: 62  RIIPNFMCQXXXXXXXXXXXXESIYGMKFADENFKMKHTGPGILSMANAGPNTNGSQFFI 121
           R+I +FM Q             SIY   FADENFK++H+ PG+LSMAN+GP+TNG QFFI
Sbjct: 67  RVIKDFMIQGGDFVNGDGTGVASIYRGPFADENFKLRHSAPGLLSMANSGPSTNGCQFFI 126
Query: 122 CTQKTPWLDGKHVVFGKVVDGYSVIKDMEKVGS-ESGRTSQTVVIEDCGQL 171
              K  WLDGKHVVFGK++DG  V++ +E V +  + +    VVI  CG++
Sbjct: 127 TCSKCDWLDGKHVVFGKIIDGLLVMRKIENVPTGPNNKPKLPVVISQCGEM 177

>pdb|4I9Y|A Chain A, Structure Of The C-terminal Domain Of Nup358 Length = 167

Iteration: 1
 Score =  179 bits (453), Expect = 8e-46,   Method: Compositional matrix adjust.
 Identities = 90/171 (52%), Positives = 110/171 (64%), Gaps = 7/171 (4%)
Query: 1   MTNPRVFFDILIGKMNKGRVVMELFADVTPKTAENFRALCTGEKGIGMSGKPLHYKGSTF 60
           MTNP VFFD+       GR+ MELF+++ P+TAENFRALCTGEKG G       +K S F
Sbjct: 4   MTNPVVFFDVCADGEPLGRITMELFSNIVPRTAENFRALCTGEKGFG-------FKNSIF 56
Query: 61  HRIIPNFMCQXXXXXXXXXXXXESIYGMKFADENFKMKHTGPGILSMANAGPNTNGSQFF 120
           HR+IP+F+CQ            +SIYG KF DENF +KHTGPG+LSMAN G NTN SQF 
Sbjct: 57  HRVIPDFVCQGGDITKHDGTGGQSIYGDKFEDENFDVKHTGPGLLSMANQGQNTNNSQFV 116
Query: 121 ICTQKTPWLDGKHVVFGKVVDGYSVIKDMEKVGSESGRTSQTVVIEDCGQL 171
           I  +K   LD KHVVFG V DG   +K +E  GS  G   + + I +CGQ+
Sbjct: 117 ITLKKAEHLDFKHVVFGFVKDGMDTVKKIESFGSPKGSVCRRITITECGQI 167

>pdb|1C5F|A Chain A, Crystal Structure Of The Cyclophilin-Like Domain From Brugia Malayi Complexed With Cyclosporin A Length = 177

Iteration: 1
 Score =  171 bits (432), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 91/170 (53%), Positives = 107/170 (62%), Gaps = 2/170 (1%)
Query: 5   RVFFDILIGKMNKGRVVMELFADVTPKTAENFRALCTGEKGIG-MSGKPLHYKGSTFHRI 63
           RVF D+ I     GR+VMEL+ D+ P+T  NF  LCTG  G G +SGKPLHYKGSTFHR+
Sbjct: 8   RVFLDVTIDGNLAGRIVMELYNDIAPRTCNNFLMLCTGMAGTGKISGKPLHYKGSTFHRV 67
Query: 64  IPNFMCQXXXXXXXXXXXXESIYGMKFADENFKMKHTGPGILSMANAGPNTNGSQFFICT 123
           I NFM Q            ESIYG  F DE F MKH  P ++SMAN GPNTNGSQFFI T
Sbjct: 68  IKNFMIQGGDFTKGDGTGGESIYGGMFDDEEFVMKHDEPFVVSMANKGPNTNGSQFFITT 127
Query: 124 QKTPWLDGKHVVFGKVVDGYSVIKDMEKVGSES-GRTSQTVVIEDCGQLA 172
              P L+  HVVFGKVV G  V+  +E + + S  R    VVI +CG+L 
Sbjct: 128 TPAPHLNNIHVVFGKVVSGQEVVTKIEYLKTNSKNRPLADVVILNCGELV 177

>pdb|2GW2|A Chain A, Crystal Structure Of The Peptidyl-Prolyl Isomerase Domain Of Human Cyclophilin G Length = 198

Iteration: 1
 Score =  171 bits (432), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 89/173 (51%), Positives = 110/173 (63%), Gaps = 2/173 (1%)
Query: 1   MTNPRVFFDILIGKMNKGRVVMELFADVTPKTAENFRALCTGEKGIGMSG-KPLHYKGST 59
           +  PR FFDI I     GRVV ELF+DV PKT ENFR LCTGEKG G S  KPLHYK   
Sbjct: 24  VQRPRCFFDIAINNQPAGRVVFELFSDVCPKTCENFRCLCTGEKGTGKSTQKPLHYKSCL 83
Query: 60  FHRIIPNFMCQXXXXXXXXXXXXESIYGMKFADENFKMKHTGPGILSMANAGPNTNGSQF 119
           FHR++ +FM Q            ESIYG  F DE+F +KH    +LSMAN G +TNGSQF
Sbjct: 84  FHRVVKDFMVQGGDFSEGNGRGGESIYGGFFEDESFAVKHNAAFLLSMANRGKDTNGSQF 143
Query: 120 FICTQKTPWLDGKHVVFGKVVDGYSVIKDMEKVGSESG-RTSQTVVIEDCGQL 171
           FI T+ TP LDG HVVFG+V+ G  V++++E   +++  +    V I  CG+L
Sbjct: 144 FITTKPTPHLDGHHVVFGQVISGQEVVREIENQKTDAASKPFAEVRILSCGEL 196

>pdb|3K2C|A Chain A, Crystal Structure Of Peptidyl-Prolyl Cis-Trans Isomerase From Encephalitozoon Cuniculi At 1.9 A Resolution Length = 193

Iteration: 1
 Score =  171 bits (432), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 91/169 (53%), Positives = 108/169 (63%), Gaps = 9/169 (5%)
Query: 6   VFFDILIGKMNKGRVVMELFADVTPKTAENFRALCTGEKGIGMSGKPLHYKGSTFHRIIP 65
           V+FD+   + + GR+VM+L  D+ PKTA+NFR LC   KG G       YKGSTFHRIIP
Sbjct: 30  VYFDVYANEESLGRIVMKLEDDIVPKTAKNFRTLCERPKGEG-------YKGSTFHRIIP 82
Query: 66  NFMCQXXXXXXXXXXXXESIYGMKFADENFKMKHTGPGILSMANAGPNTNGSQFFICTQK 125
            FM Q             SIYG KF DENF++KHT  GILSMAN G +TNGSQFFI   K
Sbjct: 83  GFMVQGGDYTAHNGTGGRSIYGEKFPDENFELKHTKEGILSMANCGAHTNGSQFFITLGK 142
Query: 126 TPWLDGKHVVFGKVVDGYSVIKDMEKVGSESGRTSQTVVIE--DCGQLA 172
           T WLD KHVVFG+VV+G  V+  + K GSESG+  +   IE  DCG L 
Sbjct: 143 TQWLDEKHVVFGEVVEGMDVVHKIAKYGSESGQVKKGYRIEIRDCGVLG 191

>pdb|2WFJ|A Chain A, Atomic Resolution Crystal Structure Of The Ppiase Domain Of Human Cyclophilin G In Complex With Cyclosporin A Length = 179

Iteration: 1
 Score =  170 bits (431), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 89/173 (51%), Positives = 110/173 (63%), Gaps = 2/173 (1%)
Query: 1   MTNPRVFFDILIGKMNKGRVVMELFADVTPKTAENFRALCTGEKGIGMS-GKPLHYKGST 59
           +  PR FFDI I     GRVV ELF+DV PKT ENFR LCTGEKG G S  KPLHYK   
Sbjct: 7   VQRPRCFFDIAINNQPAGRVVFELFSDVCPKTCENFRCLCTGEKGTGKSTQKPLHYKSCL 66
Query: 60  FHRIIPNFMCQXXXXXXXXXXXXESIYGMKFADENFKMKHTGPGILSMANAGPNTNGSQF 119
           FHR++ +FM Q            ESIYG  F DE+F +KH    +LSMAN G +TNGSQF
Sbjct: 67  FHRVVKDFMVQGGDFSEGNGRGGESIYGGFFEDESFAVKHNKEFLLSMANRGKDTNGSQF 126
Query: 120 FICTQKTPWLDGKHVVFGKVVDGYSVIKDMEKVGSESG-RTSQTVVIEDCGQL 171
           FI T+ TP LDG HVVFG+V+ G  V++++E   +++  +    V I  CG+L
Sbjct: 127 FITTKPTPHLDGHHVVFGQVISGQEVVREIENQKTDAASKPFAEVRILSCGEL 179

>pdb|2WFI|A Chain A, Atomic Resolution Crystal Structure Of The Ppiase Domain Of Human Cyclophilin G Length = 179

Iteration: 1
 Score =  170 bits (431), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 89/173 (51%), Positives = 110/173 (63%), Gaps = 2/173 (1%)
Query: 1   MTNPRVFFDILIGKMNKGRVVMELFADVTPKTAENFRALCTGEKGIGMS-GKPLHYKGST 59
           +  PR FFDI I     GRVV ELF+DV PKT ENFR LCTGEKG G S  KPLHYK   
Sbjct: 7   VQRPRCFFDIAINNQPAGRVVFELFSDVCPKTCENFRCLCTGEKGTGKSTQKPLHYKSXL 66
Query: 60  FHRIIPNFMCQXXXXXXXXXXXXESIYGMKFADENFKMKHTGPGILSMANAGPNTNGSQF 119
           FHR++ +FM Q            ESIYG  F DE+F +KH    +LSMAN G +TNGSQF
Sbjct: 67  FHRVVKDFMVQGGDFSEGNGRGGESIYGGFFEDESFAVKHNKEFLLSMANRGKDTNGSQF 126
Query: 120 FICTQKTPWLDGKHVVFGKVVDGYSVIKDMEKVGSESG-RTSQTVVIEDCGQL 171
           FI T+ TP LDG HVVFG+V+ G  V++++E   +++  +    V I  CG+L
Sbjct: 127 FITTKPTPHLDGHHVVFGQVISGQEVVREIENQKTDAASKPFAEVRILSCGEL 179

>pdb|3ICH|A Chain A, Crystal Structure Of Cyclophilin B At 1.2 A Resolution Length = 188

Iteration: 1
 Score =  170 bits (430), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 86/168 (51%), Positives = 111/168 (66%), Gaps = 8/168 (4%)
Query: 5   RVFFDILIGKMNKGRVVMELFADVTPKTAENFRALCTGEKGIGMSGKPLHYKGSTFHRII 64
           +V+FD+ IG  + GRV+  LF    PKT +NF AL TGEKG G       YK S FHR+I
Sbjct: 17  KVYFDLRIGDEDVGRVIFGLFGKTVPKTVDNFVALATGEKGFG-------YKNSKFHRVI 69
Query: 65  PNFMCQXXXXXXXXXXXXESIYGMKFADENFKMKHTGPGILSMANAGPNTNGSQFFICTQ 124
            +FM Q            +SIYG +F DENFK+KH GPG +SMANAG +TNGSQFFI T 
Sbjct: 70  KDFMIQGGDFTRGDGTGGKSIYGERFPDENFKLKHYGPGWVSMANAGKDTNGSQFFITTV 129
Query: 125 KTPWLDGKHVVFGKVVDGYSVIKDMEKVGSES-GRTSQTVVIEDCGQL 171
           KT WLDGKHVVFGKV++G  V++ +E   ++S  +  + V+I DCG++
Sbjct: 130 KTAWLDGKHVVFGKVLEGMEVVRKVESTKTDSRDKPLKDVIIADCGKI 177

>pdb|1CYN|A Chain A, Cyclophilin B Complexed With [d-(Cholinylester)ser8]-Cyclosporin Length = 178

Iteration: 1
 Score =  170 bits (430), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 86/168 (51%), Positives = 111/168 (66%), Gaps = 8/168 (4%)
Query: 5   RVFFDILIGKMNKGRVVMELFADVTPKTAENFRALCTGEKGIGMSGKPLHYKGSTFHRII 64
           +V+FD+ IG  + GRV+  LF    PKT +NF AL TGEKG G       YK S FHR+I
Sbjct: 7   KVYFDLRIGDEDVGRVIFGLFGKTVPKTVDNFVALATGEKGFG-------YKNSKFHRVI 59
Query: 65  PNFMCQXXXXXXXXXXXXESIYGMKFADENFKMKHTGPGILSMANAGPNTNGSQFFICTQ 124
            +FM Q            +SIYG +F DENFK+KH GPG +SMANAG +TNGSQFFI T 
Sbjct: 60  KDFMIQGGDFTRGDGTGGKSIYGERFPDENFKLKHYGPGWVSMANAGKDTNGSQFFITTV 119
Query: 125 KTPWLDGKHVVFGKVVDGYSVIKDMEKVGSES-GRTSQTVVIEDCGQL 171
           KT WLDGKHVVFGKV++G  V++ +E   ++S  +  + V+I DCG++
Sbjct: 120 KTAWLDGKHVVFGKVLEGMEVVRKVESTKTDSRDKPLKDVIIADCGKI 167

>pdb|4FRU|A Chain A, Crystal Structure Of Horse Wild-Type Cyclophilin B Length = 185

Iteration: 1
 Score =  168 bits (426), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 88/169 (52%), Positives = 111/169 (65%), Gaps = 10/169 (5%)
Query: 5   RVFFDILIGKMNKGRVVMELFADVTPKTAENFRALCTGEKGIGMSGKPLHYKGSTFHRII 64
           +V+FD+ IG  + GRVV+ LF    PKT +NF AL TGEKG G       YK S FHR+I
Sbjct: 14  KVYFDLRIGDEDIGRVVIGLFGKTVPKTVDNFVALATGEKGFG-------YKDSKFHRVI 66
Query: 65  PNFMCQXXXXXXXXXXXXESIYGMKFADENFKMKHTGPGILSMANAGPNTNGSQFFICTQ 124
            +FM Q            +SIYG +F DENFK+KH GPG +SMANAG +TNGSQFFI T 
Sbjct: 67  KDFMIQGGDFTRGDGTGGKSIYGERFPDENFKLKHYGPGWVSMANAGKDTNGSQFFITTV 126
Query: 125 KTPWLDGKHVVFGKVVDGYSVIKDMEKVGSESGRTS--QTVVIEDCGQL 171
           KT WLDGKHVVFGKV++G  V++ +E   ++ GR    + V I DCG++
Sbjct: 127 KTAWLDGKHVVFGKVLEGMEVVRKVETTKTD-GRDKPLKDVTIADCGKI 174

>pdb|4FRV|A Chain A, Crystal Structure Of Mutated Cyclophilin B That Causes Hyperelastosis Cutis In The American Quarter Horse Length = 185

Iteration: 1
 Score =  168 bits (425), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 88/169 (52%), Positives = 111/169 (65%), Gaps = 10/169 (5%)
Query: 5   RVFFDILIGKMNKGRVVMELFADVTPKTAENFRALCTGEKGIGMSGKPLHYKGSTFHRII 64
           +V+FD+ IG  + GRVV+ LF    PKT +NF AL TGEKG G       YK S FHR+I
Sbjct: 14  KVYFDLRIGDEDIGRVVIGLFGKTVPKTVDNFVALATGEKGFG-------YKDSKFHRVI 66
Query: 65  PNFMCQXXXXXXXXXXXXESIYGMKFADENFKMKHTGPGILSMANAGPNTNGSQFFICTQ 124
            +FM Q            +SIYG +F DENFK+KH GPG +SMANAG +TNGSQFFI T 
Sbjct: 67  KDFMIQGGDFTRGDGTGGKSIYGERFPDENFKLKHYGPGWVSMANAGKDTNGSQFFITTV 126
Query: 125 KTPWLDGKHVVFGKVVDGYSVIKDMEKVGSESGRTS--QTVVIEDCGQL 171
           KT WLDGKHVVFGKV++G  V++ +E   ++ GR    + V I DCG++
Sbjct: 127 KTAWLDGKHVVFGKVLEGMEVVRKVETTKTD-GRDKPLKDVTIADCGKI 174

>pdb|2C3B|A Chain A, The Crystal Structure Of Aspergillus Fumigatus Cyclophilin Reveals 3d Domain Swapping Of A Central Element Length = 172

Iteration: 1
 Score =  164 bits (416), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 93/176 (52%), Positives = 108/176 (61%), Gaps = 16/176 (9%)
Query: 5   RVFFDILIGKMNK-----GRVVMELFADVTPKTAENFRALCTGEKGIGMSGKPLHYKGST 59
           +VFFD+    +       GR+V  LF    PKTA+NFR LC    G G       Y+ ST
Sbjct: 4   QVFFDVEYAPVGTAETKVGRIVFNLFDKDVPKTAKNFRELCKRPAGEG-------YREST 56
Query: 60  FHRIIPNFMCQXXXXXXXXXXXXESIYGMKFADENFKMKHTGPGILSMANAGPNTNGSQF 119
           FHRIIPNFM Q             SIYG KFADENF  KH   GILSMANAGPNTNGSQF
Sbjct: 57  FHRIIPNFMIQGGDFTRGNGTGGRSIYGDKFADENFSRKHDKKGILSMANAGPNTNGSQF 116
Query: 120 FICTQKTPWLDGKHVVFGKVVD--GYSVIKDMEKVGSESG--RTSQTVVIEDCGQL 171
           FI T  T WLDGKHVVFG+V D   YSV+K++E +GS SG  R++    I +CG+L
Sbjct: 117 FITTAVTSWLDGKHVVFGEVADEKSYSVVKEIEALGSSSGSVRSNTRPKIVNCGEL 172

>pdb|2HE9|A Chain A, Structure Of The Peptidylprolyl Isomerase Domain Of The Human Nk-Tumour Recognition Protein Length = 192

Iteration: 1
 Score =  163 bits (413), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 86/174 (49%), Positives = 113/174 (64%), Gaps = 2/174 (1%)
Query: 3   NPRVFFDILIGKMNKGRVVMELFADVTPKTAENFRALCTGEKGIG-MSGKPLHYKGSTFH 61
           +P+  FDI I +   GR++ +LF+D+ PKT +NF  LC+GEKG+G  +GK L YKGSTFH
Sbjct: 19  SPQCHFDIEINREPVGRIMFQLFSDICPKTCKNFLCLCSGEKGLGKTTGKKLCYKGSTFH 78
Query: 62  RIIPNFMCQXXXXXXXXXXXXESIYGMKFADENFKMKHTGPGILSMANAGPNTNGSQFFI 121
           R++ NFM Q            ESIYG  F DENF +KH    +LSMAN G +TNGSQFFI
Sbjct: 79  RVVKNFMIQGGDFSEGNGKGGESIYGGYFKDENFILKHDRAFLLSMANRGKHTNGSQFFI 138
Query: 122 CTQKTPWLDGKHVVFGKVVDGYSVIKDMEKVGSESG-RTSQTVVIEDCGQLAEK 174
            T+  P LDG HVVFG V+ G+ VI+ +E + +++  R    V + DCG LA K
Sbjct: 139 TTKPAPHLDGVHVVFGLVISGFEVIEQIENLKTDAASRPYADVRVIDCGVLATK 192

>pdb|2ESL|A Chain A, Human Cyclophilin C In Complex With Cyclosporin A Length = 190

Iteration: 1
 Score =  163 bits (412), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 83/146 (56%), Positives = 97/146 (66%), Gaps = 7/146 (4%)
Query: 5   RVFFDILIGKMNKGRVVMELFADVTPKTAENFRALCTGEKGIGMSGKPLHYKGSTFHRII 64
           +VFFD+ IG  + GR+V+ LF  V PKT ENF AL TGEKG G       YKGS FHR+I
Sbjct: 17  KVFFDVRIGDKDVGRIVIGLFGKVVPKTVENFVALATGEKGYG-------YKGSKFHRVI 69
Query: 65  PNFMCQXXXXXXXXXXXXESIYGMKFADENFKMKHTGPGILSMANAGPNTNGSQFFICTQ 124
            +FM Q             SIYG  F DENFK+KH G G +SMANAGP+TNGSQFFI   
Sbjct: 70  KDFMIQGGDITTGDGTGGVSIYGETFPDENFKLKHYGIGWVSMANAGPDTNGSQFFITLT 129
Query: 125 KTPWLDGKHVVFGKVVDGYSVIKDME 150
           K  WLDGKHVVFGKV+DG +V+  +E
Sbjct: 130 KPTWLDGKHVVFGKVIDGMTVVHSIE 155

>pdb|2RMC|A Chain A, Crystal Structure Of Murine Cyclophilin C Complexed With Immunosuppressive Drug Cyclosporin A Length = 182

Iteration: 1
 Score =  162 bits (411), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 83/146 (56%), Positives = 98/146 (67%), Gaps = 7/146 (4%)
Query: 5   RVFFDILIGKMNKGRVVMELFADVTPKTAENFRALCTGEKGIGMSGKPLHYKGSTFHRII 64
           +VFFD+ IG  + GR+V+ LF +V PKT ENF AL TGEKG G       YKGS FHR+I
Sbjct: 9   KVFFDVRIGDKDVGRIVIGLFGNVVPKTVENFVALATGEKGYG-------YKGSIFHRVI 61
Query: 65  PNFMCQXXXXXXXXXXXXESIYGMKFADENFKMKHTGPGILSMANAGPNTNGSQFFICTQ 124
            +FM Q             SIYG  F DENFK+KH G G +SMANAGP+TNGSQFFI   
Sbjct: 62  KDFMIQGGDFTARDGTGGMSIYGETFPDENFKLKHYGIGWVSMANAGPDTNGSQFFITLT 121
Query: 125 KTPWLDGKHVVFGKVVDGYSVIKDME 150
           K  WLDGKHVVFGKV+DG +V+  +E
Sbjct: 122 KPTWLDGKHVVFGKVLDGMTVVHSIE 147

>pdb|1H0P|A Chain A, Cyclophilin_5 From C. Elegans Length = 182

Iteration: 1
 Score =  160 bits (406), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 86/169 (50%), Positives = 104/169 (61%), Gaps = 8/169 (4%)
Query: 5   RVFFDILIGKMNKGRVVMELFADVTPKTAENFRALCTGEKGIGMSGKPLHYKGSTFHRII 64
           RV+FD+ IG    GR+V+ LF    PKTA NF  L    KG G       Y GS FHR+I
Sbjct: 8   RVYFDMEIGGKPIGRIVIGLFGKTVPKTATNFIELAKKPKGEG-------YPGSKFHRVI 60
Query: 65  PNFMCQXXXXXXXXXXXXESIYGMKFADENFKMKHTGPGILSMANAGPNTNGSQFFICTQ 124
            +FM Q             SIYG KFADENFK+KH G G LSMANAG +TNGSQFFI T 
Sbjct: 61  ADFMIQGGDFTRGDGTGGRSIYGEKFADENFKLKHYGAGWLSMANAGADTNGSQFFITTV 120
Query: 125 KTPWLDGKHVVFGKVVDGYSVIKDMEKVGSESG-RTSQTVVIEDCGQLA 172
           KTPWLDG+HVVFGK+++G  V++ +E+     G R  Q V+I   G +A
Sbjct: 121 KTPWLDGRHVVFGKILEGMDVVRKIEQTEKLPGDRPKQDVIIAASGHIA 169

>pdb|1XO7|A Chain A, Crystal Structure Of Cyclophilin From Trypanosoma Cruzi Length = 166

Iteration: 1
 Score =  160 bits (406), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 86/168 (51%), Positives = 107/168 (63%), Gaps = 9/168 (5%)
Query: 5   RVFFDILIGKMNKGRVVMELFADVTPKTAENFRALCTGEKGIGMSGKPLHYKGSTFHRII 64
           +V+FDI IG    GRVV+ LF +  PKT ENF+ L +GE G G       YKGS FHR+I
Sbjct: 7   KVYFDITIGDEPVGRVVIGLFGNDVPKTVENFKQLASGENGFG-------YKGSIFHRVI 59
Query: 65  PNFMCQXXXXXXXXXXXXESIYGMKFADENFKMKHTGPGILSMANAGPNTNGSQFFICTQ 124
            NFM Q            +SIYG +F DEN K+KH   G +SMANAGPN+NGSQFF+ T 
Sbjct: 60  RNFMIQGGDFTNFDGTGGKSIYGTRFDDENLKIKHF-VGAVSMANAGPNSNGSQFFVTTA 118
Query: 125 KTPWLDGKHVVFGKVVDGYSVIKDMEKVGSE-SGRTSQTVVIEDCGQL 171
            TPWLDG+HVVFGKVV+G  V+K +E   +  + +  + V I DCG L
Sbjct: 119 PTPWLDGRHVVFGKVVEGMDVVKKVENTKTGLNDKPKKAVKINDCGVL 166

>pdb|2HAQ|A Chain A, Crystal Structure Of Cyclophilin A From Leishmania Donovani Length = 172

Iteration: 1
 Score =  157 bits (398), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 87/168 (51%), Positives = 103/168 (61%), Gaps = 9/168 (5%)
Query: 5   RVFFDILIGKMNKGRVVMELFADVTPKTAENFRALCTGEKGIGMSGKPLHYKGSTFHRII 64
           +V+FD++I     GR+ + LF    P T ENFR LCTGE G G       YK S FHR+I
Sbjct: 13  KVYFDVMIDSEPLGRITIGLFGKDAPLTTENFRQLCTGEHGFG-------YKDSIFHRVI 65
Query: 65  PNFMCQXXXXXXXXXXXXESIYGMKFADENFKMKHTGPGILSMANAGPNTNGSQFFICTQ 124
            NFM Q            +SIYG KFADEN  +KH   G LSMANAGPNTNGSQFFI T 
Sbjct: 66  QNFMIQGGDFTNFDGTGGKSIYGEKFADENLNVKHF-VGALSMANAGPNTNGSQFFITTA 124
Query: 125 KTPWLDGKHVVFGKVVDGYSVIKDMEKVGSES-GRTSQTVVIEDCGQL 171
            TPWLDG+HVVFGKV+DG  V+  +EK  + S  R  + V I   G+L
Sbjct: 125 PTPWLDGRHVVFGKVLDGMDVVLRIEKTKTNSHDRPVKPVKIVASGEL 172

>pdb|3BT8|A Chain A, Crystal Structure Of Mutant Cyclophilin (R147a) From Leishmania Donovani Length = 172

Iteration: 1
 Score =  156 bits (395), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 87/168 (51%), Positives = 102/168 (60%), Gaps = 9/168 (5%)
Query: 5   RVFFDILIGKMNKGRVVMELFADVTPKTAENFRALCTGEKGIGMSGKPLHYKGSTFHRII 64
           +V+FD++I     GR+ + LF    P T ENFR LCTGE G G       YK S FHR+I
Sbjct: 13  KVYFDVMIDSEPLGRITIGLFGKDAPLTTENFRQLCTGEHGFG-------YKDSIFHRVI 65
Query: 65  PNFMCQXXXXXXXXXXXXESIYGMKFADENFKMKHTGPGILSMANAGPNTNGSQFFICTQ 124
            NFM Q            +SIYG KFADEN  +KH   G LSMANAGPNTNGSQFFI T 
Sbjct: 66  QNFMIQGGDFTNFDGTGGKSIYGEKFADENLNVKHF-VGALSMANAGPNTNGSQFFITTA 124
Query: 125 KTPWLDGKHVVFGKVVDGYSVIKDMEKVGSES-GRTSQTVVIEDCGQL 171
            TPWLDG HVVFGKV+DG  V+  +EK  + S  R  + V I   G+L
Sbjct: 125 PTPWLDGAHVVFGKVLDGMDVVLRIEKTKTNSHDRPVKPVKIVASGEL 172

>pdb|1Z81|A Chain A, Crystal Structure Of Cyclophilin From Plasmodium Yoelii Length = 229

Iteration: 1
 Score =  149 bits (376), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 80/174 (45%), Positives = 105/174 (60%), Gaps = 6/174 (3%)
Query: 2   TNPRVFFDILIGKMNKGRVVMELFADVTPKTAENFRALCTGEKGIGMSGKPLHYKGSTFH 61
           +NP VF DI +G    G+   ELF ++ PKT+ENFR  CTGE  +  +  P+ YK + FH
Sbjct: 58  SNPVVFMDINLGNNFLGKFKFELFQNIVPKTSENFRQFCTGEYKV--NNLPVGYKNTIFH 115
Query: 62  RIIPNFMCQXXXXXXXXXXXXESIYGMKFADENFKMKHTGPGILSMANAGPNTNGSQFFI 121
           R+I  FM Q             SIYG KF DENF +KH   G+LSMAN+GPNTNG QFFI
Sbjct: 116 RVIKEFMIQGGDFINHNGSGSLSIYGEKFDDENFDIKHDKEGLLSMANSGPNTNGCQFFI 175
Query: 122 CTQKTPWLDGKHVVFGKVVDGYS--VIKDMEKVGSESGRTSQTVVIE--DCGQL 171
            T+K  WLDGK+VVFG+++D  S  ++K +E V          + I   +CG+L
Sbjct: 176 TTKKCEWLDGKNVVFGRIIDNDSLLLLKKIENVSVTPYIYKPKIPINVVECGEL 229

>pdb|1ZKC|A Chain A, Crystal Structure Of The Cyclophiln_ring Domain Of Human Peptidylprolyl Isomerase (Cyclophilin)-Like 2 Isoform B Length = 197

Iteration: 1
 Score =  111 bits (278), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 66/154 (42%), Positives = 87/154 (56%), Gaps = 14/154 (9%)
Query: 16  NKGRVVMELFADVTPKTAENFRALCTGEKGIGMSGKPLHYKGSTFHRIIPNFMCQXXXXX 75
           NKG + +EL  D+TPKT ENF  LC          K  +Y G+ FHR I NF+ Q     
Sbjct: 27  NKGDLNLELHCDLTPKTCENFIRLC----------KKHYYDGTIFHRSIRNFVIQGGDPT 76
Query: 76  XXXXXXXESIYGMKFADE-NFKMKHTGPGILSMANAGPNTNGSQFFICTQKTPWLDGKHV 134
                  ES +G  F DE    + HTG GILSMAN+GPN+N SQFFI  +   +LD KH 
Sbjct: 77  GTGTGG-ESYWGKPFKDEFRPNLSHTGRGILSMANSGPNSNRSQFFITFRSCAYLDKKHT 135
Query: 135 VFGKVVDGYSVIKDMEKVGSE--SGRTSQTVVIE 166
           +FG+VV G+ V+  ME V S+  + R  + + I+
Sbjct: 136 IFGRVVGGFDVLTAMENVESDPKTDRPKEEIRID 169

>pdb|1XYH|A Chain A, Crystal Structure Of Recombinant Human Cyclophilin J Length = 161

Iteration: 1
 Score =  106 bits (265), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 66/153 (43%), Positives = 84/153 (54%), Gaps = 14/153 (9%)
Query: 18  GRVVMELFADVTPKTAENFRALCTGEKGIGMSGKPLHYKGSTFHRIIPNFMCQXXXXXXX 77
           G + +E+F + TPKT ENF ALC             +Y G  FHR I  FM Q       
Sbjct: 10  GDIKIEVFCERTPKTCENFLALCASN----------YYNGCIFHRNIKGFMVQTGDPTGT 59
Query: 78  XXXXXESIYGMKFADENFK-MKHTGPGILSMANAGPNTNGSQFFICTQKTPWLDGKHVVF 136
                 SI+G KF DE  + +KH   G++SMAN GPNTNGSQFFI   K P LD K+ VF
Sbjct: 60  GRGG-NSIWGKKFEDEYSEYLKHNVRGVVSMANNGPNTNGSQFFITYGKQPHLDMKYTVF 118
Query: 137 GKVVDGYSVIKDMEK--VGSESGRTSQTVVIED 167
           GKV+DG   + ++EK  V  ++ R    V I+D
Sbjct: 119 GKVIDGLETLDELEKLPVNEKTYRPLNDVHIKD 151

>pdb|2OJU|A Chain A, X-Ray Structure Of Complex Of Human Cyclophilin J With Cyclosporin A Length = 167

Iteration: 1
 Score =  106 bits (265), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 66/153 (43%), Positives = 84/153 (54%), Gaps = 14/153 (9%)
Query: 18  GRVVMELFADVTPKTAENFRALCTGEKGIGMSGKPLHYKGSTFHRIIPNFMCQXXXXXXX 77
           G + +E+F + TPKT ENF ALC             +Y G  FHR I  FM Q       
Sbjct: 16  GDIKIEVFCERTPKTCENFLALCASN----------YYNGCIFHRNIKGFMVQTGDPTGT 65
Query: 78  XXXXXESIYGMKFADENFK-MKHTGPGILSMANAGPNTNGSQFFICTQKTPWLDGKHVVF 136
                 SI+G KF DE  + +KH   G++SMAN GPNTNGSQFFI   K P LD K+ VF
Sbjct: 66  GRGG-NSIWGKKFEDEYSEYLKHNVRGVVSMANNGPNTNGSQFFITYGKQPHLDMKYTVF 124
Query: 137 GKVVDGYSVIKDMEK--VGSESGRTSQTVVIED 167
           GKV+DG   + ++EK  V  ++ R    V I+D
Sbjct: 125 GKVIDGLETLDELEKLPVNEKTYRPLNDVHIKD 157

>pdb|1XWN|A Chain A, Solution Structure Of Cyclophilin Like 1(Ppil1) And Insights Into Its Interaction With Skip Length = 174

Iteration: 1
 Score =  103 bits (256), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 60/140 (42%), Positives = 80/140 (57%), Gaps = 12/140 (8%)
Query: 18  GRVVMELFADVTPKTAENFRALCTGEKGIGMSGKPLHYKGSTFHRIIPNFMCQXXXXXXX 77
           G +V+EL+    PKT +NF  L    +G        +Y G+ FHRII +FM Q       
Sbjct: 21  GIIVLELYWKHAPKTCKNFAELA--RRG--------YYNGTKFHRIIKDFMIQGGDPTGT 70
Query: 78  XXXXXESIYGMKFADE-NFKMKHTGPGILSMANAGPNTNGSQFFICTQKTPWLDGKHVVF 136
                 SIYG +F DE +  +K TG GIL+MANAGP+TNGSQFF+    T WLDGKH +F
Sbjct: 71  GRGGA-SIYGKQFEDELHPDLKFTGAGILAMANAGPDTNGSQFFVTLAPTQWLDGKHTIF 129
Query: 137 GKVVDGYSVIKDMEKVGSES 156
           G+V  G  ++  +  V + S
Sbjct: 130 GRVCQGIGMVNRVGMVETNS 149

>pdb|2X7K|A Chain A, The Crystal Structure Of Ppil1 In Complex With Cyclosporine A Suggests A Binding Mode For Skip Length = 166

Iteration: 1
 Score =  102 bits (255), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 60/140 (42%), Positives = 80/140 (57%), Gaps = 12/140 (8%)
Query: 18  GRVVMELFADVTPKTAENFRALCTGEKGIGMSGKPLHYKGSTFHRIIPNFMCQXXXXXXX 77
           G +V+EL+    PKT +NF  L    +G        +Y G+ FHRII +FM Q       
Sbjct: 21  GIIVLELYWKHAPKTCKNFAELA--RRG--------YYNGTKFHRIIKDFMIQGGDPTGT 70
Query: 78  XXXXXESIYGMKFADE-NFKMKHTGPGILSMANAGPNTNGSQFFICTQKTPWLDGKHVVF 136
                 SIYG +F DE +  +K TG GIL+MANAGP+TNGSQFF+    T WLDGKH +F
Sbjct: 71  GRGGA-SIYGKQFEDELHPDLKFTGAGILAMANAGPDTNGSQFFVTLAPTQWLDGKHTIF 129
Query: 137 GKVVDGYSVIKDMEKVGSES 156
           G+V  G  ++  +  V + S
Sbjct: 130 GRVCQGIGMVNRVGMVETNS 149

>pdb|2K7N|A Chain A, Solution Structure Of The Ppil1 Bound To A Fragment Of Skip Length = 203

Iteration: 1
 Score =  102 bits (255), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 60/140 (42%), Positives = 80/140 (57%), Gaps = 12/140 (8%)
Query: 18  GRVVMELFADVTPKTAENFRALCTGEKGIGMSGKPLHYKGSTFHRIIPNFMCQXXXXXXX 77
           G +V+EL+    PKT +NF  L    +G        +Y G+ FHRII +FM Q       
Sbjct: 21  GIIVLELYWKHAPKTCKNFAELA--RRG--------YYNGTKFHRIIKDFMIQGGDPTGT 70
Query: 78  XXXXXESIYGMKFADE-NFKMKHTGPGILSMANAGPNTNGSQFFICTQKTPWLDGKHVVF 136
                 SIYG +F DE +  +K TG GIL+MANAGP+TNGSQFF+    T WLDGKH +F
Sbjct: 71  GRGGA-SIYGKQFEDELHPDLKFTGAGILAMANAGPDTNGSQFFVTLAPTQWLDGKHTIF 129
Query: 137 GKVVDGYSVIKDMEKVGSES 156
           G+V  G  ++  +  V + S
Sbjct: 130 GRVCQGIGMVNRVGMVETNS 149

>pdb|2A2N|A Chain A, Crystal Structure Of The Peptidylprolyl Isomerase Domain Of Human Ppwd1 Length = 176

Iteration: 1
 Score =  101 bits (251), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 63/150 (42%), Positives = 79/150 (52%), Gaps = 12/150 (8%)
Query: 4   PRVFFDILIGKMNKGRVVMELFADVTPKTAENFRALCTGEKGIGMSGKPLHYKGSTFHRI 63
           P+   D  I   + G +  +LF    PKT ENF   C       +  +  +Y G TFHRI
Sbjct: 17  PKRVSDSAIIHTSMGDIHTKLFPVECPKTVENF---C-------VHSRNGYYNGHTFHRI 66
Query: 64  IPNFMCQXXXXXXXXXXXXESIYGMKFADE-NFKMKHTGPGILSMANAGPNTNGSQFFIC 122
           I  FM Q            ESI+G +F DE +  ++H  P  LSMANAG NTNGSQFFI 
Sbjct: 67  IKGFMIQTGDPTGTGMGG-ESIWGGEFEDEFHSTLRHDRPYTLSMANAGSNTNGSQFFIT 125
Query: 123 TQKTPWLDGKHVVFGKVVDGYSVIKDMEKV 152
              TPWLD KH VFG+V  G  V++ +  V
Sbjct: 126 VVPTPWLDNKHTVFGRVTKGMEVVQRISNV 155

>pdb|2B71|A Chain A, Plasmodium Yoelii Cyclophilin-Like Protein Length = 196

Iteration: 1
 Score = 99.8 bits (247), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 60/138 (43%), Positives = 76/138 (55%), Gaps = 12/138 (8%)
Query: 16  NKGRVVMELFADVTPKTAENFRALCTGEKGIGMSGKPLHYKGSTFHRIIPNFMCQXXXXX 75
           N G   +EL+   +PKT  NF  LC  E G         Y  + FHR+IPNF+ Q     
Sbjct: 46  NLGDFEVELYWYHSPKTCLNFYTLC--EMGF--------YDNTIFHRVIPNFVIQGGDPT 95
Query: 76  XXXXXXXESIYGMKFADE-NFKMKHTGPGILSMANAGPNTNGSQFFICTQKTPWLDGKHV 134
                  +SIYG  F DE N ++KHTG GILSM+N GPNTN SQFFI     P LDGKH 
Sbjct: 96  GTGKGG-KSIYGEYFEDEINKELKHTGAGILSMSNNGPNTNSSQFFITLAPLPHLDGKHT 154
Query: 135 VFGKVVDGYSVIKDMEKV 152
           +F +V    + I+++  V
Sbjct: 155 IFARVSKNMTCIENIASV 172

>pdb|2FU0|A Chain A, Plasmodium Falciparum Cyclophilin Pfe0505w Putative Cyclosporin- Binding Domain Length = 160

Iteration: 1
 Score = 97.8 bits (242), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 58/139 (41%), Positives = 77/139 (55%), Gaps = 12/139 (8%)
Query: 18  GRVVMELFADVTPKTAENFRALCTGEKGIGMSGKPLHYKGSTFHRIIPNFMCQXXXXXXX 77
           G + + LF     KT +NF           ++G   +Y    FHR+I +FM Q       
Sbjct: 15  GDIHISLFYKECKKTVQNFSVH-------SING---YYNNCIFHRVIKHFMVQTGDPSGD 64
Query: 78  XXXXXESIYGMKFADENF-KMKHTGPGILSMANAGPNTNGSQFFICTQKTPWLDGKHVVF 136
                ESI+G +F DE F  + H+ P ++SMAN GPNTNGSQFFI T   PWLD KH VF
Sbjct: 65  GTGG-ESIWGNEFEDEFFDHLNHSKPFMVSMANCGPNTNGSQFFITTVPCPWLDFKHTVF 123
Query: 137 GKVVDGYSVIKDMEKVGSE 155
           GKV  G  ++ D+EKV ++
Sbjct: 124 GKVTQGSKIVLDIEKVRTD 142

>pdb|1W74|A Chain A, X-Ray Structure Of Peptidyl-Prolyl Cis-Trans Isomerase A, Ppia, Rv0009, From Mycobacterium Tuberculosis. Length = 191

Iteration: 1
 Score = 95.5 bits (236), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 62/160 (38%), Positives = 86/160 (53%), Gaps = 13/160 (8%)
Query: 16  NKGRVVMELFADVTPKTAENFRALCTGEKGIG---MSGKPL--HYKGSTFHRIIPNFMCQ 70
           N+G + + LF +  PKT  NF  L  G K       SG P    Y G+ FHR+I  FM Q
Sbjct: 31  NRGDIKIALFGNHAPKTVANFVGLAQGTKDYSTQNASGGPSGPFYDGAVFHRVIQGFMIQ 90
Query: 71  XXXXXXXXXXXXESIYGMKFADE-NFKMKHTGPGILSMANAGPNTNGSQFFICTQKTPWL 129
                             KFADE + +++   P +L+MANAGP TNGSQFFI   KTP L
Sbjct: 91  GGDPTGTGRGGPG----YKFADEFHPELQFDKPYLLAMANAGPGTNGSQFFITVGKTPHL 146
Query: 130 DGKHVVFGKVVDGYS--VIKDMEKVGSE-SGRTSQTVVIE 166
           + +H +FG+V+D  S  V++ + K  ++ + R +  VVIE
Sbjct: 147 NRRHTIFGEVIDAESQRVVEAISKTATDGNDRPTDPVVIE 186

>pdb|2POE|A Chain A, Crystal Structure Of Cryptosporidium Parvum Cyclophilin Type Peptidyl-Prolyl Cis-Trans Isomerase Cgd2_1660 Length = 185

Iteration: 1
 Score = 90.1 bits (222), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 60/158 (37%), Positives = 85/158 (53%), Gaps = 17/158 (10%)
Query: 16  NKGRVVMELFADVTPKTAENFRALCTGEKGIGMSGKPLHYKGSTFHRIIPNFMCQXXXXX 75
           N G +  ELF    PK  +NF AL         SG   +YK + FH+ I  F+ Q     
Sbjct: 24  NYGDLKFELFCSQCPKACKNFLALSA-------SG---YYKNTIFHKNIKGFIIQGGDPT 73
Query: 76  XXXXXXXESIYGMKFADENF-KMKHTGPGILSMANAG----PNTNGSQFFICTQKTPWLD 130
                  ESIYG  F DE + ++K+   GILSMA+ G    PNTNGSQFFI     P L+
Sbjct: 74  GTGKGG-ESIYGRYFDDEIYPELKYDRRGILSMASKGASKKPNTNGSQFFITYSSLPQLN 132
Query: 131 GKHVVFGKVVDGYSVIKDMEKVGSE-SGRTSQTVVIED 167
           G++V+FGK++DG+  +  +E   S+ S +    ++I+D
Sbjct: 133 GEYVIFGKLIDGFETLNTLENCPSDKSHKPIDEIIIKD 170

>pdb|3BO7|A Chain A, Crystal Structure Of Toxoplasma Gondii Peptidyl-Prolyl Cis-Trans Isomerase, 541.M00136 Length = 201

Iteration: 1
 Score = 76.3 bits (186), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 46/148 (31%), Positives = 73/148 (49%), Gaps = 22/148 (14%)
Query: 17  KGRVVMELFADVTPKTAENFRALCTGEKGIGMSGKPLHYKGSTFHRIIPNFMCQXXXXXX 76
           +G + +EL AD+ P+  ++F  LC  +          ++  + FHR I NFM Q      
Sbjct: 15  QGSLNIELHADMAPRACDSFLRLCAVK----------YFDDTIFHRCIRNFMIQGGRAEL 64
Query: 77  XXXXXXESIY-----------GMKFADE-NFKMKHTGPGILSMANAGPNTNGSQFFICTQ 124
                 + +            G  F DE + ++ H G G+LSMAN G ++N S+FFI  +
Sbjct: 65  RQPSKKKEVQQSPRSISGFPGGAPFEDEFDNRLVHQGIGVLSMANDGKHSNLSEFFITFK 124
Query: 125 KTPWLDGKHVVFGKVVDGYSVIKDMEKV 152
               L+ KH +FG+VV G  V++  EK+
Sbjct: 125 SCEHLNNKHTIFGRVVGGLDVLRQWEKL 152

>pdb|2HQ6|A Chain A, Structure Of The Cyclophilin_cecyp16-like Domain Of The Serologically Defined Colon Cancer Antigen 10 From Homo Sapiens Length = 185

Iteration: 1
 Score = 75.9 bits (185), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 44/128 (34%), Positives = 64/128 (50%), Gaps = 12/128 (9%)
Query: 14  KMNKGRVVMELFADVTPKTAENFRALCTGEKGIGMSGKPLHYKGSTFHRIIPNFMCQXXX 73
           K   G + +EL++   PK   NF  LC             +Y  + FHR++P F+ Q   
Sbjct: 30  KTTAGDIDIELWSKEAPKACRNFIQLCL----------EAYYDNTIFHRVVPGFIVQGGD 79
Query: 74  XXXXXXXXXESIYGMKFADE-NFKMKHTGPGILSMANAGPNTNGSQFFICTQKTPWLDGK 132
                    ESIYG  F DE + +++    G+++MANAG + NGSQFF    +   L+ K
Sbjct: 80  PTGTGSGG-ESIYGAPFKDEFHSRLRFNRRGLVAMANAGSHDNGSQFFFTLGRADELNNK 138
Query: 133 HVVFGKVV 140
           H +FGKV 
Sbjct: 139 HTIFGKVT 146

>pdb|3T1U|A Chain A, Crystal Structure Of The Complex Of Cyclophilin-a Enzyme From Azotobacter Vinelandii With Sucafpfpna Peptide Length = 163

Iteration: 1
 Score = 56.6 bits (135), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 49/178 (27%), Positives = 72/178 (40%), Gaps = 50/178 (28%)
Query: 14  KMNKGRVVMELFADVTPKTAENFRALCTGEKGIGMSGKPLHYKGSTFHRIIPNFMCQXXX 73
           + N G + ++LFAD  P+TA NF              K  HY G+ FHR+I  FM Q   
Sbjct: 5   QTNHGTITLKLFADKAPETAANFEQYV----------KDGHYDGTIFHRVIDGFMIQ--- 51
Query: 74  XXXXXXXXXESIYGMKFADENFKMKHTGPGILSMANAG---------------PNTNGSQ 118
                        G  F +   K K T   I + AN G               P++  +Q
Sbjct: 52  -------------GGGF-EPGMKQKSTRAPIKNEANNGLSNKKYTIAMARTPDPHSASAQ 97
Query: 119 FFICTQKTPWLDGK--------HVVFGKVVDGYSVIKDMEKVGSESGRTSQTVVIEDC 168
           FFI  +   +LD          + VFG+VV+G  V+  ++ V + S      V ++D 
Sbjct: 98  FFINVKDNAFLDHTAPTAHGWGYAVFGEVVEGTDVVDRIKSVATGSRAGHGDVPVDDV 155

>pdb|3S6M|A Chain A, The Structure Of A Peptidyl-Prolyl Cis-Trans Isomerase From Burkholderia Pseudomallei Length = 167

Iteration: 1
 Score = 48.9 bits (115), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 47/160 (29%), Positives = 66/160 (41%), Gaps = 18/160 (11%)
Query: 16  NKGRVVMELFADVTPKTAENFRALCTGEKGIGMSGKPLHYKGSTFHRIIPNFMCQ----- 70
           N G + +EL     PKT ENF  L   +KG        HY G+ FHR+I  FM Q     
Sbjct: 11  NHGVIKLELDEAKAPKTVENF--LNYVKKG--------HYDGTIFHRVINGFMIQGGGFE 60
Query: 71  --XXXXXXXXXXXXESIYGMKFADENFKMKHTGPGILSMANAGPNTNGSQFFICTQKTPW 128
                         E+  G+K       M  T     + A    N N ++F   +  TP 
Sbjct: 61  PGLKQKPTDAPIANEANNGLKNDTYTIAMARTNDPHSATAQFFINVNDNEFLNHSSPTPQ 120
Query: 129 LDGKHVVFGKVVDGYSVIKDMEKVGSESGRTSQTVVIEDC 168
             G + VFGKVV+G  ++  ++ V + S    Q V  +D 
Sbjct: 121 GWG-YAVFGKVVEGQDIVDKIKAVKTGSKGFHQDVPNDDV 159

>pdb|2OSE|A Chain A, Crystal Structure Of The Mimivirus Cyclophilin Length = 234

Iteration: 1
 Score = 46.2 bits (108), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 50/199 (25%), Positives = 74/199 (37%), Gaps = 32/199 (16%)
Query: 3   NPRVFFDILIGKMNKGRVVMELFADVTPKTAENFRALCTGE------KGIGMSGKPLH-- 54
           NPRV+ DI++     GR+ ++LF D  P   ENF  L  G+       G G      H  
Sbjct: 14  NPRVYMDIVLNNEIIGRLQIKLFRDAFPAGVENFVQLTNGKTYRVNSNGTGKYKYNRHIN 73
Query: 55  --YKGSTFHRIIPNFMCQXXXXXXXXXXXXESIYGMKFADE-------NFKMKHTGPGIL 105
             Y+G  FH ++ N                 ++Y     DE       ++   H   G+L
Sbjct: 74  RTYEGCKFHNVLHNNYIVSGDIYNSNGSSAGTVY----CDEPIPPVFGDYFYPHESKGLL 129
Query: 106 SMA----NAGPNTNGSQFFIC------TQKTPWLDGKHVVFGKVVDGYSVIKDMEK-VGS 154
           S+      +G     S F I       +     LD   VV G+V  G  V+  +   +  
Sbjct: 130 SLVPYTDESGNRYYDSTFMITLDDIRPSNVLDELDRDQVVIGQVYGGLDVLDKINSMIKP 189
Query: 155 ESGRTSQTVVIEDCGQLAE 173
            +GR   T  I  CG   +
Sbjct: 190 YAGRKYPTFSIGKCGAYLD 208

>pdb|2NUL|A Chain A, Peptidylprolyl Isomerase From E. Coli Length = 164

Iteration: 1
 Score = 46.2 bits (108), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 45/164 (27%), Positives = 68/164 (41%), Gaps = 26/164 (15%)
Query: 16  NKGRVVMELFADVTPKTAENFRALCTGEKGIGMSGKPLHYKGSTFHRIIPNFMCQXXXXX 75
           N G +V++ F D  P+T +NF   C          +   Y  + FHR+I  FM Q     
Sbjct: 7   NHGDIVIKTFDDKAPETVKNFLDYC----------REGFYNNTIFHRVINGFMIQGGGFE 56
Query: 76  --XXXXXXXESIYGMKFADENFKMKHTGPGILSMANA-GPNTNGSQFFICTQKTPWLDGK 132
                    E I      + N  +K+T  G L+MA    P++  +QFFI      +L+  
Sbjct: 57  PGMKQKATKEPIKN----EANNGLKNT-RGTLAMARTQAPHSATAQFFINVVDNDFLNFS 111
Query: 133 --------HVVFGKVVDGYSVIKDMEKVGSESGRTSQTVVIEDC 168
                   + VF +VVDG  V+  ++ V +      Q V  ED 
Sbjct: 112 GESLQGWGYCVFAEVVDGMDVVDKIKGVATGRSGMHQDVPKEDV 155

>pdb|1LOP|A Chain A, Cyclophilin A Complexed With Succinyl-Ala-Pro-Ala-P-Nitroanilide Length = 164

Iteration: 1
 Score = 43.9 bits (102), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 44/164 (26%), Positives = 67/164 (40%), Gaps = 26/164 (15%)
Query: 16  NKGRVVMELFADVTPKTAENFRALCTGEKGIGMSGKPLHYKGSTFHRIIPNFMCQXXXXX 75
           N G +V++ F D  P+T +NF   C          +   Y  + FHR+I  FM Q     
Sbjct: 7   NHGDIVIKTFDDKAPETVKNFLDYC----------REGFYNNTIFHRVINGFMIQGGGFE 56
Query: 76  --XXXXXXXESIYGMKFADENFKMKHTGPGILSMANA-GPNTNGSQFFICTQKTPWLDGK 132
                    E I      + N  +K+T  G L+MA    P++  +QFFI      +L+  
Sbjct: 57  PGMKQKATKEPIKN----EANNGLKNT-RGTLAMARTQAPHSATAQFFINVVDNDFLNFS 111
Query: 133 --------HVVFGKVVDGYSVIKDMEKVGSESGRTSQTVVIEDC 168
                   + VF +VVDG   +  ++ V +      Q V  ED 
Sbjct: 112 GESLQGWGYCVFAEVVDGMDEVDKIKGVATGRSGMHQDVPKEDV 155

>pdb|3BKP|A Chain A, Crystal Structure Of The Toxoplasma Gondii Cyclophilin, 49.m03261 Length = 232

Iteration: 1
 Score = 43.1 bits (100), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 43/159 (27%), Positives = 71/159 (44%), Gaps = 31/159 (19%)
Query: 18  GRVVMELFADVTPKTAENFRALCTGEKGIGMSGKPLHYKGSTFHRIIPNFMCQXXXXXXX 77
           G + +EL+A   P    NF  LC       + G   +Y  + FHR++ +F+ Q       
Sbjct: 31  GDLDVELWARECPLACRNFVQLC-------LEG---YYVNTIFHRVVKDFIVQGGDPTGT 80
Query: 78  XXXXXESIY-GMKFADENF-KMKHTGPGILSMANAGPN--------------TNGSQFFI 121
                ++ + G  F  E   ++K    G++ +AN G +              TNG+QFFI
Sbjct: 81  GRGGADTTFDGKPFDVETHPRLKFRYRGLVGVANLGRSSKDAENDERGRSLGTNGNQFFI 140
Query: 122 CTQKTPWLDGKHVVFGKVVDG--YSVIK--DMEKVGSES 156
              +   L+  + +FGKV     Y+++K  D+E VG E 
Sbjct: 141 TLARADVLNNAYTLFGKVTGHTLYNLMKFNDLE-VGKED 178

>pdb|1CLH|A Chain A, Three-Dimensional Solution Structure Of Escherichia Coli Periplasmic Cyclophilin Length = 166

Iteration: 1
 Score = 41.6 bits (96), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 43/152 (28%), Positives = 61/152 (40%), Gaps = 19/152 (12%)
Query: 18  GRVVMELFADVTPKTAENFRALCTGEKGIGMSGKPLHYKGSTFHRIIPNFMCQXXXXXXX 77
           G + +EL     P + +NF            SG    Y  +TFHR+IP FM Q       
Sbjct: 14  GNIELELDKQKAPVSVQNFVDYVN-------SG---FYNNTTFHRVIPGFMIQGGGFTEQ 63
Query: 78  XXXXXESIYGMKFADENFKMKHTGPGILSMA-NAGPNTNGSQFFICTQKTPWLD-GK--- 132
                 +      AD   +      G ++MA  A  ++  SQFFI      +LD G+   
Sbjct: 64  MQQKKPNPPIKNEADNGLRNTR---GTIAMARTADKDSATSQFFINVADNAFLDHGQRDF 120
Query: 133 -HVVFGKVVDGYSVIKDMEKVGSESGRTSQTV 163
            + VFGKVV G  V   + +V +      Q V
Sbjct: 121 GYAVFGKVVKGMDVADKISQVPTHDVGPYQNV 152

>pdb|1J2A|A Chain A, Structure Of E. Coli Cyclophilin B K163t Mutant Length = 166

Iteration: 1
 Score = 41.6 bits (96), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 41/141 (29%), Positives = 58/141 (41%), Gaps = 19/141 (13%)
Query: 18  GRVVMELFADVTPKTAENFRALCTGEKGIGMSGKPLHYKGSTFHRIIPNFMCQXXXXXXX 77
           G + +EL     P + +NF            SG    Y  +TFHR+IP FM Q       
Sbjct: 14  GNIELELDKQKAPVSVQNFVDYVN-------SG---FYNNTTFHRVIPGFMIQGGGFTEQ 63
Query: 78  XXXXXESIYGMKFADENFKMKHTGPGILSMA-NAGPNTNGSQFFICTQKTPWLD-GK--- 132
                 +      AD   +      G ++MA  A  ++  SQFFI      +LD G+   
Sbjct: 64  MQQKKPNPPIKNEADNGLRNTR---GTIAMARTADKDSATSQFFINVADNAFLDHGQRDF 120
Query: 133 -HVVFGKVVDGYSVIKDMEKV 152
            + VFGKVV G  V   + +V
Sbjct: 121 GYAVFGKVVKGMDVADKISQV 141

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	174
2igv_A	173	Peptidyl-prolyl CIS-trans isomerase 3; rotamase; 1	1e-132
2poy_A	186	Peptidyl-prolyl CIS-trans isomerase; isomerase-imm	1e-131
1qng_A	170	Peptidyl-prolyl CIS-trans isomerase; isomerase-imm	1e-128
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	1e-128
2wfi_A	179	Peptidyl-prolyl CIS-trans isomerase G; phosphoprot	1e-127
2he9_A	192	NK-tumor recognition protein; cyclosporin, isomera	1e-127
1a58_A	177	Cyclophilin; isomerase, ppiase; 1.95A {Brugia mala	1e-126
1mzw_A	177	Cyclophilin H, U-snRNP-ASSOCIATED cyclophilin; cyc	1e-125
2z6w_A	165	Peptidyl-prolyl CIS-trans isomerase; isomerase-imm	1e-124
2r99_A	173	Peptidyl-prolyl CIS-trans isomerase E; CIS-trans i	1e-123
2cmt_A	172	Peptidyl-prolyl CIS-trans isomerase E; rotamase ac	1e-123
3rdd_A	184	Peptidyl-prolyl CIS-trans isomerase A; beta barrel	1e-123
3pmp_A	164	Cyclophilin A; peptidyl prolyl isomerase, isomeras	1e-122
1z81_A	229	Cyclophilin; structural genomics, structural genom	1e-122
3k2c_A	193	Peptidyl-prolyl CIS-trans isomerase; ssgcid, NIH,	1e-121
3ich_A	188	Peptidyl-prolyl CIS-trans isomerase B; beta sandwi	1e-120
2haq_A	172	Cyclophilin; rotamase, proline, isomerase, CIS-tra	1e-117
2c3b_A	172	Ppiase, cyclophilin; isomerase, 3D domain swapping	1e-117
2ose_A	234	Probable peptidyl-prolyl CIS-trans isomerase; cycl	1e-113
2a2n_A	176	Peptidylprolyl isomerase domain and WD repeat CON;	1e-76
2fu0_A	160	Cyclophilin, putative; PFE0505W, cyclosporin-bindi	2e-74
2k7n_A	203	Peptidyl-prolyl CIS-trans isomerase-like 1; beta b	4e-74
2x7k_A	166	Peptidyl-prolyl CIS-trans isomerase-like 1; isomer	3e-71
2b71_A	196	Cyclophilin-like protein; structural genomics, str	1e-70
2poe_A	185	Cyclophilin-like protein, putative; cryptosporidiu	3e-67
3bo7_A	201	Peptidyl-prolyl CIS-trans isomerase cyclophilin-T;	1e-66
2ok3_A	161	Peptidyl-prolyl CIS-trans isomerase-like 3; beta-b	1e-66
1zkc_A	197	Peptidyl-prolyl CIS-trans isomerase like 2; CIS-tr	3e-65
2hq6_A	185	Serologically defined colon cancer antigen 10; pro	5e-62
1w74_A	191	Peptidyl-prolyl CIS-trans isomerase A; cyclophilin	8e-60
3bkp_A	232	Cyclophilin; malaria, isomerase, structural GENO s	3e-54
3s6m_A	167	Peptidyl-prolyl CIS-trans isomerase; seattle struc	3e-41
1v9t_A	166	Cyclophilin B; beta barrel, isomerase-isomerase in	9e-40
1lop_A	164	Cyclophilin A; rotamase, isomerase-isomerase inhib	1e-39
3rfy_A	369	Peptidyl-prolyl CIS-trans isomerase CYP38, chloro;	9e-35

>2igv_A Peptidyl-prolyl CIS-trans isomerase 3; rotamase; 1.67A {Caenorhabditis elegans} SCOP: b.62.1.1 PDB: 1e3b_A 1e8k_A 1dyw_A 2igw_A 2hqj_A Length = 173

 Score =  366 bits (943), Expect = e-132
 Identities = 127/171 (74%), Positives = 142/171 (83%)

Query: 1   MTNPRVFFDILIGKMNKGRVVMELFADVTPKTAENFRALCTGEKGIGMSGKPLHYKGSTF 60
           M+  +VFFDI IG    GR+VMEL+ DV PKTA NFRALCTGE GIG SGKPLH+KGS F
Sbjct: 1   MSRSKVFFDITIGGKASGRIVMELYDDVVPKTAGNFRALCTGENGIGKSGKPLHFKGSKF 60

Query: 61  HRIIPNFMCQGGDFTRGNGTGGESIYGMKFADENFKMKHTGPGILSMANAGPNTNGSQFF 120
           HRIIPNFM QGGDFTRGNGTGGESIYG KF DENFK KHTGPG+LSMANAGPNTNGSQFF
Sbjct: 61  HRIIPNFMIQGGDFTRGNGTGGESIYGEKFPDENFKEKHTGPGVLSMANAGPNTNGSQFF 120

Query: 121 ICTQKTPWLDGKHVVFGKVVDGYSVIKDMEKVGSESGRTSQTVVIEDCGQL 171
           +CT KT WLDGKHVVFG+VV+G  V+K +E  GS+SG+  +  +I DCGQL
Sbjct: 121 LCTVKTEWLDGKHVVFGRVVEGLDVVKAVESNGSQSGKPVKDCMIADCGQL 171

>2poy_A Peptidyl-prolyl CIS-trans isomerase; isomerase-immunosuppressant complex, immunosuppressant, cyclophilin, isomerase, S genomics, structural genomics consortium; HET: BMT; 1.80A {Cryptosporidium parvum iowa II} PDB: 2plu_A* Length = 186

 Score =  363 bits (934), Expect = e-131
 Identities = 115/169 (68%), Positives = 131/169 (77%)

Query: 1   MTNPRVFFDILIGKMNKGRVVMELFADVTPKTAENFRALCTGEKGIGMSGKPLHYKGSTF 60
             NP V+FDI IG+   GR+ MELFAD  P TAENFRALCTGEKG+G SGKPL Y GS F
Sbjct: 17  QGNPVVYFDISIGQTPAGRITMELFADKVPITAENFRALCTGEKGMGQSGKPLCYTGSFF 76

Query: 61  HRIIPNFMCQGGDFTRGNGTGGESIYGMKFADENFKMKHTGPGILSMANAGPNTNGSQFF 120
           HRIIP FM QGGDFTRG+GTGGESIYG KF DENF   H  P +LSMANAGPNTNGSQFF
Sbjct: 77  HRIIPQFMIQGGDFTRGDGTGGESIYGSKFRDENFVYTHDAPFLLSMANAGPNTNGSQFF 136

Query: 121 ICTQKTPWLDGKHVVFGKVVDGYSVIKDMEKVGSESGRTSQTVVIEDCG 169
           I T   PWLDGKHVVFGKV++G  V+K +EK GS++G+ +++V I   G
Sbjct: 137 ITTVPCPWLDGKHVVFGKVLEGMEVVKSIEKCGSQNGKPTKSVCITASG 185

>1qng_A Peptidyl-prolyl CIS-trans isomerase; isomerase-immunosuppressant complex, cyclophilin-cyclosporin complex, immunosuppressant, cyclophilin; HET: BMT; 2.1A {Plasmodium falciparum} SCOP: b.62.1.1 PDB: 1qnh_A* Length = 170

 Score =  356 bits (916), Expect = e-128
 Identities = 113/170 (66%), Positives = 132/170 (77%), Gaps = 1/170 (0%)

Query: 2   TNPRVFFDILIGKMNKGRVVMELFADVTPKTAENFRALCTGEKGIGMSGKPLHYKGSTFH 61
              +VFFDI I   N GR++ ELF+D+TP+T ENFRALCTGEK  G  GK LHYK S FH
Sbjct: 2   KRSKVFFDISIDNSNAGRIIFELFSDITPRTCENFRALCTGEKI-GSRGKNLHYKNSIFH 60

Query: 62  RIIPNFMCQGGDFTRGNGTGGESIYGMKFADENFKMKHTGPGILSMANAGPNTNGSQFFI 121
           RIIP FMCQGGD T GNG+GGESIYG  F DENF MKH  PG+LSMANAGPNTN SQFFI
Sbjct: 61  RIIPQFMCQGGDITNGNGSGGESIYGRSFTDENFNMKHDQPGLLSMANAGPNTNSSQFFI 120

Query: 122 CTQKTPWLDGKHVVFGKVVDGYSVIKDMEKVGSESGRTSQTVVIEDCGQL 171
                PWLDGKHVVFGKV++G +V+++MEK G++SG   ++VVI DCG+L
Sbjct: 121 TLVPCPWLDGKHVVFGKVIEGMNVVREMEKEGAKSGYVKRSVVITDCGEL 170

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A Length = 370

 Score =  362 bits (931), Expect = e-128
 Identities = 113/174 (64%), Positives = 131/174 (75%), Gaps = 1/174 (0%)

Query: 1   MTNPRVFFDILIGKMNKGRVVMELFADVTPKTAENFRALCTGEKGIGM-SGKPLHYKGST 59
            +NPRVFFD+ IG    GR+V+ELFAD+ PKTAENFRALCTGEKGIG  +GKPLH+KG  
Sbjct: 13  PSNPRVFFDVDIGGERVGRIVLELFADIVPKTAENFRALCTGEKGIGPTTGKPLHFKGCP 72

Query: 60  FHRIIPNFMCQGGDFTRGNGTGGESIYGMKFADENFKMKHTGPGILSMANAGPNTNGSQF 119
           FHRII  FM QGGDF+  NGTGGESIYG KF DENF  KH   G+LSMANAG NTNGSQF
Sbjct: 73  FHRIIKKFMIQGGDFSNQNGTGGESIYGEKFEDENFHYKHDKEGLLSMANAGSNTNGSQF 132

Query: 120 FICTQKTPWLDGKHVVFGKVVDGYSVIKDMEKVGSESGRTSQTVVIEDCGQLAE 173
           FI T  TP LDGKHVVFG+V+ G  V K +E V  +  + ++  VI +CG+L E
Sbjct: 133 FITTVPTPHLDGKHVVFGQVIKGMGVAKILENVEVKGEKPAKLCVIAECGELKE 186

>2wfi_A Peptidyl-prolyl CIS-trans isomerase G; phosphoprotein, PRE-mRNA splicing, alternative splicing, nucleus, rotamase, cyclosporin; HET: OCS; 0.75A {Homo sapiens} PDB: 2wfj_A* 2gw2_A Length = 179

 Score =  353 bits (909), Expect = e-127
 Identities = 98/173 (56%), Positives = 120/173 (69%), Gaps = 2/173 (1%)

Query: 1   MTNPRVFFDILIGKMNKGRVVMELFADVTPKTAENFRALCTGEKGIGMS-GKPLHYKGST 59
           +  PR FFDI I     GRVV ELF+DV PKT ENFR LCTGEKG G S  KPLHYK   
Sbjct: 7   VQRPRCFFDIAINNQPAGRVVFELFSDVCPKTCENFRCLCTGEKGTGKSTQKPLHYKSCL 66

Query: 60  FHRIIPNFMCQGGDFTRGNGTGGESIYGMKFADENFKMKHTGPGILSMANAGPNTNGSQF 119
           FHR++ +FM QGGDF+ GNG GGESIYG  F DE+F +KH    +LSMAN G +TNGSQF
Sbjct: 67  FHRVVKDFMVQGGDFSEGNGRGGESIYGGFFEDESFAVKHNKEFLLSMANRGKDTNGSQF 126

Query: 120 FICTQKTPWLDGKHVVFGKVVDGYSVIKDMEKVGSESG-RTSQTVVIEDCGQL 171
           FI T+ TP LDG HVVFG+V+ G  V++++E   +++  +    V I  CG+L
Sbjct: 127 FITTKPTPHLDGHHVVFGQVISGQEVVREIENQKTDAASKPFAEVRILSCGEL 179

>2he9_A NK-tumor recognition protein; cyclosporin, isomerase, membrane, repeat, rotamase, peptidylprolyl isomerase, structural genomics; 2.00A {Homo sapiens} Length = 192

 Score =  353 bits (908), Expect = e-127
 Identities = 95/176 (53%), Positives = 123/176 (69%), Gaps = 2/176 (1%)

Query: 1   MTNPRVFFDILIGKMNKGRVVMELFADVTPKTAENFRALCTGEKGIGMS-GKPLHYKGST 59
             +P+  FDI I +   GR++ +LF+D+ PKT +NF  LC+GEKG+G + GK L YKGST
Sbjct: 17  RGSPQCHFDIEINREPVGRIMFQLFSDICPKTCKNFLCLCSGEKGLGKTTGKKLCYKGST 76

Query: 60  FHRIIPNFMCQGGDFTRGNGTGGESIYGMKFADENFKMKHTGPGILSMANAGPNTNGSQF 119
           FHR++ NFM QGGDF+ GNG GGESIYG  F DENF +KH    +LSMAN G +TNGSQF
Sbjct: 77  FHRVVKNFMIQGGDFSEGNGKGGESIYGGYFKDENFILKHDRAFLLSMANRGKHTNGSQF 136

Query: 120 FICTQKTPWLDGKHVVFGKVVDGYSVIKDMEKVGSESG-RTSQTVVIEDCGQLAEK 174
           FI T+  P LDG HVVFG V+ G+ VI+ +E + +++  R    V + DCG LA K
Sbjct: 137 FITTKPAPHLDGVHVVFGLVISGFEVIEQIENLKTDAASRPYADVRVIDCGVLATK 192

>1a58_A Cyclophilin; isomerase, ppiase; 1.95A {Brugia malayi} SCOP: b.62.1.1 PDB: 1a33_A 1c5f_A* Length = 177

 Score =  351 bits (902), Expect = e-126
 Identities = 101/173 (58%), Positives = 119/173 (68%), Gaps = 2/173 (1%)

Query: 1   MTNPRVFFDILIGKMNKGRVVMELFADVTPKTAENFRALCTGEKGIG-MSGKPLHYKGST 59
               RVF D+ I     GR+VMEL+ D+ P+T  NF  LCTG  G G +SGKPLHYKGST
Sbjct: 4   KDRRRVFLDVTIDGNLAGRIVMELYNDIAPRTCNNFLMLCTGMAGTGKISGKPLHYKGST 63

Query: 60  FHRIIPNFMCQGGDFTRGNGTGGESIYGMKFADENFKMKHTGPGILSMANAGPNTNGSQF 119
           FHR+I NFM QGGDFT+G+GTGGESIYG  F DE F MKH  P ++SMAN GPNTNGSQF
Sbjct: 64  FHRVIKNFMIQGGDFTKGDGTGGESIYGGMFDDEEFVMKHDEPFVVSMANKGPNTNGSQF 123

Query: 120 FICTQKTPWLDGKHVVFGKVVDGYSVIKDMEKVGSES-GRTSQTVVIEDCGQL 171
           FI T   P L+  HVVFGKVV G  V+  +E + + S  R    VVI +CG+L
Sbjct: 124 FITTTPAPHLNNIHVVFGKVVSGQEVVTKIEYLKTNSKNRPLADVVILNCGEL 176

>1mzw_A Cyclophilin H, U-snRNP-ASSOCIATED cyclophilin; cyclophilin, peptidyl-prolyl-CIS/trans isomerase, spliceosome, U4/U6-60K protein, WD protein; 2.00A {Homo sapiens} SCOP: b.62.1.1 PDB: 1qoi_A Length = 177

 Score =  347 bits (892), Expect = e-125
 Identities = 99/172 (57%), Positives = 122/172 (70%), Gaps = 3/172 (1%)

Query: 1   MTNPRVFFDILIGKMNKGRVVMELFADVTPKTAENFRALCTGEKGIGMSGKPLHYKGSTF 60
             NP VFFD+ IG    GR+ +ELFADV PKTAENFR  CTGE      G P+ YKGSTF
Sbjct: 8   PVNPVVFFDVSIGGQEVGRMKIELFADVVPKTAENFRQFCTGEFRK--DGVPIGYKGSTF 65

Query: 61  HRIIPNFMCQGGDFTRGNGTGGESIYGMKFADENFKMKHTGPGILSMANAGPNTNGSQFF 120
           HR+I +FM QGGDF  G+GTG  SIY   FADENFK++H+ PG+LSMAN+GP+TNG QFF
Sbjct: 66  HRVIKDFMIQGGDFVNGDGTGVASIYRGPFADENFKLRHSAPGLLSMANSGPSTNGCQFF 125

Query: 121 ICTQKTPWLDGKHVVFGKVVDGYSVIKDMEKVGS-ESGRTSQTVVIEDCGQL 171
           I   K  WLDGKHVVFGK++DG  V++ +E V +  + +    VVI  CG++
Sbjct: 126 ITCSKCDWLDGKHVVFGKIIDGLLVMRKIENVPTGPNNKPKLPVVISQCGEM 177

>2z6w_A Peptidyl-prolyl CIS-trans isomerase; isomerase-immunosuppressant complex, immunosuppressant, cyclophilin D; HET: BMT MLE CIT; 0.96A {Homo sapiens} SCOP: b.62.1.1 PDB: 3rcg_A* 3r49_A* 3r54_A 3r56_A* 3r57_A* 3r59_A* 3rcf_A* 3r4g_A* 3rci_X* 3rck_X* 3rcl_A* 3rd9_X* 3rda_X* 3rdb_A* 3rdc_A* 2bit_X 2biu_X 3qyu_A 3k0m_A 1ak4_A* ... Length = 165

 Score =  344 bits (885), Expect = e-124
 Identities = 118/172 (68%), Positives = 135/172 (78%), Gaps = 7/172 (4%)

Query: 1   MTNPRVFFDILIGKMNKGRVVMELFADVTPKTAENFRALCTGEKGIGMSGKPLHYKGSTF 60
           M NP V+ D+       GRVV+EL ADV PKTAENFRALCTGEKG G       YKGSTF
Sbjct: 1   MGNPLVYLDVDANGKPLGRVVLELKADVVPKTAENFRALCTGEKGFG-------YKGSTF 53

Query: 61  HRIIPNFMCQGGDFTRGNGTGGESIYGMKFADENFKMKHTGPGILSMANAGPNTNGSQFF 120
           HR+IP+FMCQ GDFT  NGTGG+SIYG +F DENF +KH GPG+LSMANAGPNTNGSQFF
Sbjct: 54  HRVIPSFMCQAGDFTNHNGTGGKSIYGSRFPDENFTLKHVGPGVLSMANAGPNTNGSQFF 113

Query: 121 ICTQKTPWLDGKHVVFGKVVDGYSVIKDMEKVGSESGRTSQTVVIEDCGQLA 172
           ICT KT WLDGKHVVFG V++G  V+K +E  GS+SGRTS+ +VI DCGQL+
Sbjct: 114 ICTIKTDWLDGKHVVFGHVIEGMDVVKKIESFGSKSGRTSKKIVITDCGQLS 165

>2r99_A Peptidyl-prolyl CIS-trans isomerase E; CIS-trans isomerization, structural genomics consortium, SGC, alternative splicing, mRNA processing; 1.61A {Homo sapiens} SCOP: b.62.1.1 PDB: 3uch_A 1zmf_A Length = 173

 Score =  344 bits (884), Expect = e-123
 Identities = 106/171 (61%), Positives = 127/171 (74%), Gaps = 7/171 (4%)

Query: 1   MTNPRVFFDILIGKMNKGRVVMELFADVTPKTAENFRALCTGEKGIGMSGKPLHYKGSTF 60
            +NP+V+ DI IG    GR+ M L +DV P TAENFR LCT EKG G       +KGS+F
Sbjct: 9   RSNPQVYMDIKIGNKPAGRIQMLLRSDVVPMTAENFRCLCTHEKGFG-------FKGSSF 61

Query: 61  HRIIPNFMCQGGDFTRGNGTGGESIYGMKFADENFKMKHTGPGILSMANAGPNTNGSQFF 120
           HRIIP FMCQGGDFT  NGTGG+SIYG KF DENF +KHTGPG+LSMAN+GPNTNGSQFF
Sbjct: 62  HRIIPQFMCQGGDFTNHNGTGGKSIYGKKFDDENFILKHTGPGLLSMANSGPNTNGSQFF 121

Query: 121 ICTQKTPWLDGKHVVFGKVVDGYSVIKDMEKVGSESGRTSQTVVIEDCGQL 171
           +   KT WLDGKHVVFG+V +G  V++ +E  GS+ G+  Q V+I DCG+ 
Sbjct: 122 LTCDKTDWLDGKHVVFGEVTEGLDVLRQIEAQGSKDGKPKQKVIIADCGEY 172

>2cmt_A Peptidyl-prolyl CIS-trans isomerase E; rotamase activity, rotamase, RNA-binding, cyclosporin, cyclophilin, beta-barrel; 1.50A {Schistosoma mansoni} PDB: 2ck1_A Length = 172

 Score =  343 bits (882), Expect = e-123
 Identities = 110/171 (64%), Positives = 133/171 (77%), Gaps = 7/171 (4%)

Query: 1   MTNPRVFFDILIGKMNKGRVVMELFADVTPKTAENFRALCTGEKGIGMSGKPLHYKGSTF 60
              PRVFFDI IG  + GR+VMEL +D+ P+TAENFRALCTGE+G G       Y    F
Sbjct: 8   RNLPRVFFDIRIGNGDAGRIVMELRSDIVPRTAENFRALCTGERGFG-------YHNCCF 60

Query: 61  HRIIPNFMCQGGDFTRGNGTGGESIYGMKFADENFKMKHTGPGILSMANAGPNTNGSQFF 120
           HR+IP FMCQGGDF +G+GTGG+SIYG KF DENF+++H G G+LSMAN+GPNTNGSQFF
Sbjct: 61  HRVIPQFMCQGGDFVKGDGTGGKSIYGRKFDDENFQLRHEGFGVLSMANSGPNTNGSQFF 120

Query: 121 ICTQKTPWLDGKHVVFGKVVDGYSVIKDMEKVGSESGRTSQTVVIEDCGQL 171
           ICT K  WLDGKHVVFG+VVDG +V+K ME VGS+SG+  + V+I  CG+L
Sbjct: 121 ICTTKCDWLDGKHVVFGRVVDGQNVVKKMESVGSKSGKVKEPVIISRCGEL 171

>3rdd_A Peptidyl-prolyl CIS-trans isomerase A; beta barrel, cytosolic, inhibito isomerase-isomerase inhibitor complex; HET: EA4; 2.14A {Homo sapiens} Length = 184

 Score =  343 bits (881), Expect = e-123
 Identities = 121/171 (70%), Positives = 134/171 (78%), Gaps = 7/171 (4%)

Query: 1   MTNPRVFFDILIGKMNKGRVVMELFADVTPKTAENFRALCTGEKGIGMSGKPLHYKGSTF 60
           M NP VFFDI +     GRV  ELFAD  PKTAENFRAL TGEKG G       YKGS F
Sbjct: 20  MVNPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFG-------YKGSCF 72

Query: 61  HRIIPNFMCQGGDFTRGNGTGGESIYGMKFADENFKMKHTGPGILSMANAGPNTNGSQFF 120
           HRIIP FMCQGGDFTR NGTGG+SIYG KF DENF +KHTGPGILSMANAGPNTNGSQFF
Sbjct: 73  HRIIPGFMCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFF 132

Query: 121 ICTQKTPWLDGKHVVFGKVVDGYSVIKDMEKVGSESGRTSQTVVIEDCGQL 171
           ICT KT WLDGKHVVFGKV +G ++++ ME+ GS +G+TS+ + I DCGQL
Sbjct: 133 ICTAKTEWLDGKHVVFGKVKEGMNIVEAMERFGSRNGKTSKKITIADCGQL 183

>3pmp_A Cyclophilin A; peptidyl prolyl isomerase, isomerase-immunosuppressant compl; HET: BMT; 1.47A {Moniliophthora perniciosa} PDB: 3o7t_A Length = 164

 Score =  341 bits (877), Expect = e-122
 Identities = 101/170 (59%), Positives = 125/170 (73%), Gaps = 7/170 (4%)

Query: 3   NPRVFFDILIGKMNKGRVVMELFADVTPKTAENFRALCTGEKGIGMSGKPLHYKGSTFHR 62
              VFF+I I    +GR+V +L+ +  PKTA+NFR L TG+ G G       YK S FHR
Sbjct: 2   MANVFFNISINDKPEGRIVFKLYDEAVPKTAKNFRELATGQHGFG-------YKDSIFHR 54

Query: 63  IIPNFMCQGGDFTRGNGTGGESIYGMKFADENFKMKHTGPGILSMANAGPNTNGSQFFIC 122
           +IP FM QGGDFTR NGTGG+SIYG KFADENF++KHT PG+LSMANAG NTNGSQFFI 
Sbjct: 55  VIPQFMLQGGDFTRHNGTGGKSIYGEKFADENFQVKHTKPGLLSMANAGANTNGSQFFIT 114

Query: 123 TQKTPWLDGKHVVFGKVVDGYSVIKDMEKVGSESGRTSQTVVIEDCGQLA 172
           T  T WLDGKHVVFG+V++G  +++ +E  GS SG+T+ T+ I DCG +A
Sbjct: 115 TVPTSWLDGKHVVFGEVIEGLDIVRKVEGKGSASGKTNATIKITDCGTVA 164

>1z81_A Cyclophilin; structural genomics, structural genomics consortium, SGC, isomerase; 2.80A {Plasmodium yoelii yoelii} SCOP: b.62.1.1 Length = 229

 Score =  343 bits (881), Expect = e-122
 Identities = 85/175 (48%), Positives = 113/175 (64%), Gaps = 6/175 (3%)

Query: 1   MTNPRVFFDILIGKMNKGRVVMELFADVTPKTAENFRALCTGEKGIGMSGKPLHYKGSTF 60
            +NP VF DI +G    G+   ELF ++ PKT+ENFR  CTGE  +  +  P+ YK + F
Sbjct: 57  PSNPVVFMDINLGNNFLGKFKFELFQNIVPKTSENFRQFCTGEYKV--NNLPVGYKNTIF 114

Query: 61  HRIIPNFMCQGGDFTRGNGTGGESIYGMKFADENFKMKHTGPGILSMANAGPNTNGSQFF 120
           HR+I  FM QGGDF   NG+G  SIYG KF DENF +KH   G+LSMAN+GPNTNG QFF
Sbjct: 115 HRVIKEFMIQGGDFINHNGSGSLSIYGEKFDDENFDIKHDKEGLLSMANSGPNTNGCQFF 174

Query: 121 ICTQKTPWLDGKHVVFGKVV--DGYSVIKDMEKVGSES--GRTSQTVVIEDCGQL 171
           I T+K  WLDGK+VVFG+++  D   ++K +E V       +    + + +CG+L
Sbjct: 175 ITTKKCEWLDGKNVVFGRIIDNDSLLLLKKIENVSVTPYIYKPKIPINVVECGEL 229

>3k2c_A Peptidyl-prolyl CIS-trans isomerase; ssgcid, NIH, niaid, SBRI, UW, decode, cytoplasm, rotamase, structural genomics; HET: PG5; 1.95A {Encephalitozoon cuniculi} Length = 193

 Score =  337 bits (867), Expect = e-121
 Identities = 99/175 (56%), Positives = 119/175 (68%), Gaps = 9/175 (5%)

Query: 1   MTNPRVFFDILIGKMNKGRVVMELFADVTPKTAENFRALCTGEKGIGMSGKPLHYKGSTF 60
             +  V+FD+   + + GR+VM+L  D+ PKTA+NFR LC   KG G       YKGSTF
Sbjct: 25  EASGNVYFDVYANEESLGRIVMKLEDDIVPKTAKNFRTLCERPKGEG-------YKGSTF 77

Query: 61  HRIIPNFMCQGGDFTRGNGTGGESIYGMKFADENFKMKHTGPGILSMANAGPNTNGSQFF 120
           HRIIP FM QGGD+T  NGTGG SIYG KF DENF++KHT  GILSMAN G +TNGSQFF
Sbjct: 78  HRIIPGFMVQGGDYTAHNGTGGRSIYGEKFPDENFELKHTKEGILSMANCGAHTNGSQFF 137

Query: 121 ICTQKTPWLDGKHVVFGKVVDGYSVIKDMEKVGSESGRTSQT--VVIEDCGQLAE 173
           I   KT WLD KHVVFG+VV+G  V+  + K GSESG+  +   + I DCG L  
Sbjct: 138 ITLGKTQWLDEKHVVFGEVVEGMDVVHKIAKYGSESGQVKKGYRIEIRDCGVLGS 192

>3ich_A Peptidyl-prolyl CIS-trans isomerase B; beta sandwich, cyclosporin, endoplasmic reticulum, glycoprot isomerase, rotamase; 1.20A {Homo sapiens} PDB: 3ici_A* 1cyn_A* 2esl_A* 2rmc_A* 1h0p_A 1xo7_A 1xq7_A* Length = 188

 Score =  335 bits (861), Expect = e-120
 Identities = 97/170 (57%), Positives = 123/170 (72%), Gaps = 8/170 (4%)

Query: 3   NPRVFFDILIGKMNKGRVVMELFADVTPKTAENFRALCTGEKGIGMSGKPLHYKGSTFHR 62
             +V+FD+ IG  + GRV+  LF    PKT +NF AL TGEKG G       YK S FHR
Sbjct: 15  TVKVYFDLRIGDEDVGRVIFGLFGKTVPKTVDNFVALATGEKGFG-------YKNSKFHR 67

Query: 63  IIPNFMCQGGDFTRGNGTGGESIYGMKFADENFKMKHTGPGILSMANAGPNTNGSQFFIC 122
           +I +FM QGGDFTRG+GTGG+SIYG +F DENFK+KH GPG +SMANAG +TNGSQFFI 
Sbjct: 68  VIKDFMIQGGDFTRGDGTGGKSIYGERFPDENFKLKHYGPGWVSMANAGKDTNGSQFFIT 127

Query: 123 TQKTPWLDGKHVVFGKVVDGYSVIKDMEKVGSES-GRTSQTVVIEDCGQL 171
           T KT WLDGKHVVFGKV++G  V++ +E   ++S  +  + V+I DCG++
Sbjct: 128 TVKTAWLDGKHVVFGKVLEGMEVVRKVESTKTDSRDKPLKDVIIADCGKI 177

>2haq_A Cyclophilin; rotamase, proline, isomerase, CIS-trans, protozoa, KAla-AZAR.; 1.97A {Leishmania donovani} PDB: 3eov_A* 3bt8_A Length = 172

 Score =  329 bits (845), Expect = e-117
 Identities = 96/171 (56%), Positives = 113/171 (66%), Gaps = 9/171 (5%)

Query: 2   TNPRVFFDILIGKMNKGRVVMELFADVTPKTAENFRALCTGEKGIGMSGKPLHYKGSTFH 61
              +V+FD++I     GR+ + LF    P T ENFR LCTGE G G       YK S FH
Sbjct: 10  VTAKVYFDVMIDSEPLGRITIGLFGKDAPLTTENFRQLCTGEHGFG-------YKDSIFH 62

Query: 62  RIIPNFMCQGGDFTRGNGTGGESIYGMKFADENFKMKHTGPGILSMANAGPNTNGSQFFI 121
           R+I NFM QGGDFT  +GTGG+SIYG KFADEN  +KH   G LSMANAGPNTNGSQFFI
Sbjct: 63  RVIQNFMIQGGDFTNFDGTGGKSIYGEKFADENLNVKHF-VGALSMANAGPNTNGSQFFI 121

Query: 122 CTQKTPWLDGKHVVFGKVVDGYSVIKDMEKVGSES-GRTSQTVVIEDCGQL 171
            T  TPWLDG+HVVFGKV+DG  V+  +EK  + S  R  + V I   G+L
Sbjct: 122 TTAPTPWLDGRHVVFGKVLDGMDVVLRIEKTKTNSHDRPVKPVKIVASGEL 172

>2c3b_A Ppiase, cyclophilin; isomerase, 3D domain swapping, misfolding, Asp F 11, allergen, rotamase; 1.85A {Aspergillus fumigatus} SCOP: b.62.1.1 Length = 172

 Score =  328 bits (842), Expect = e-117
 Identities = 105/179 (58%), Positives = 121/179 (67%), Gaps = 16/179 (8%)

Query: 2   TNPRVFFDI-----LIGKMNKGRVVMELFADVTPKTAENFRALCTGEKGIGMSGKPLHYK 56
           +  +VFFD+        +   GR+V  LF    PKTA+NFR LC    G G       Y+
Sbjct: 1   SMSQVFFDVEYAPVGTAETKVGRIVFNLFDKDVPKTAKNFRELCKRPAGEG-------YR 53

Query: 57  GSTFHRIIPNFMCQGGDFTRGNGTGGESIYGMKFADENFKMKHTGPGILSMANAGPNTNG 116
            STFHRIIPNFM QGGDFTRGNGTGG SIYG KFADENF  KH   GILSMANAGPNTNG
Sbjct: 54  ESTFHRIIPNFMIQGGDFTRGNGTGGRSIYGDKFADENFSRKHDKKGILSMANAGPNTNG 113

Query: 117 SQFFICTQKTPWLDGKHVVFGKVVD--GYSVIKDMEKVGSESG--RTSQTVVIEDCGQL 171
           SQFFI T  T WLDGKHVVFG+V D   YSV+K++E +GS SG  R++    I +CG+L
Sbjct: 114 SQFFITTAVTSWLDGKHVVFGEVADEKSYSVVKEIEALGSSSGSVRSNTRPKIVNCGEL 172

>2ose_A Probable peptidyl-prolyl CIS-trans isomerase; cyclophilin; 2.04A {Mimivirus} Length = 234

 Score =  321 bits (824), Expect = e-113
 Identities = 50/197 (25%), Positives = 76/197 (38%), Gaps = 24/197 (12%)

Query: 2   TNPRVFFDILIGKMNKGRVVMELFADVTPKTAENFRALCTGEKGIGMS----------GK 51
            NPRV+ DI++     GR+ ++LF D  P   ENF  L  G+     S            
Sbjct: 13  KNPRVYMDIVLNNEIIGRLQIKLFRDAFPAGVENFVQLTNGKTYRVNSNGTGKYKYNRHI 72

Query: 52  PLHYKGSTFHRIIPNFMCQGGDFTRGNGTGGESIYGMKFAD---ENFKMKHTGPGILSMA 108
              Y+G  FH ++ N     GD    NG+   ++Y  +       ++   H   G+LS+ 
Sbjct: 73  NRTYEGCKFHNVLHNNYIVSGDIYNSNGSSAGTVYCDEPIPPVFGDYFYPHESKGLLSLV 132

Query: 109 ----NAGPNTNGSQFFIC------TQKTPWLDGKHVVFGKVVDGYSVIKDMEKV-GSESG 157
                +G     S F I       +     LD   VV G+V  G  V+  +  +    +G
Sbjct: 133 PYTDESGNRYYDSTFMITLDDIRPSNVLDELDRDQVVIGQVYGGLDVLDKINSMIKPYAG 192

Query: 158 RTSQTVVIEDCGQLAEK 174
           R   T  I  CG   + 
Sbjct: 193 RKYPTFSIGKCGAYLDS 209

>2a2n_A Peptidylprolyl isomerase domain and WD repeat CON; CIS-trans isomerization, protein-folding, peptidylprolyl ISO structural genomics; 1.65A {Homo sapiens} SCOP: b.62.1.1 Length = 176

 Score =  225 bits (576), Expect = 1e-76
 Identities = 71/169 (42%), Positives = 91/169 (53%), Gaps = 14/169 (8%)

Query: 3   NPRVFFDILIGKMNKGRVVMELFADVTPKTAENFRALCTGEKGIGMSGKPLHYKGSTFHR 62
            P+   D  I   + G +  +LF    PKT ENF              +  +Y G TFHR
Sbjct: 16  GPKRVSDSAIIHTSMGDIHTKLFPVECPKTVENFCVHS----------RNGYYNGHTFHR 65

Query: 63  IIPNFMCQGGDFTRGNGTGGESIYGMKFADE-NFKMKHTGPGILSMANAGPNTNGSQFFI 121
           II  FM Q GD T G G GGESI+G +F DE +  ++H  P  LSMANAG NTNGSQFFI
Sbjct: 66  IIKGFMIQTGDPT-GTGMGGESIWGGEFEDEFHSTLRHDRPYTLSMANAGSNTNGSQFFI 124

Query: 122 CTQKTPWLDGKHVVFGKVVDGYSVIKDMEKV--GSESGRTSQTVVIEDC 168
               TPWLD KH VFG+V  G  V++ +  V    ++ +  + V I + 
Sbjct: 125 TVVPTPWLDNKHTVFGRVTKGMEVVQRISNVKVNPKTDKPYEDVSIINI 173

>2fu0_A Cyclophilin, putative; PFE0505W, cyclosporin-binding domain, structura genomics, structural genomics consortium, SGC, unknown FUNC; 1.80A {Plasmodium falciparum} SCOP: b.62.1.1 Length = 160

 Score =  219 bits (560), Expect = 2e-74
 Identities = 65/155 (41%), Positives = 88/155 (56%), Gaps = 13/155 (8%)

Query: 16  NKGRVVMELFADVTPKTAENFRALCTGEKGIGMSGKPLHYKGSTFHRIIPNFMCQGGDFT 75
             G + + LF     KT +NF                 +Y    FHR+I +FM Q GD +
Sbjct: 13  TMGDIHISLFYKECKKTVQNFSVHSING----------YYNNCIFHRVIKHFMVQTGDPS 62

Query: 76  RGNGTGGESIYGMKFADENFK-MKHTGPGILSMANAGPNTNGSQFFICTQKTPWLDGKHV 134
            G+GTGGESI+G +F DE F  + H+ P ++SMAN GPNTNGSQFFI T   PWLD KH 
Sbjct: 63  -GDGTGGESIWGNEFEDEFFDHLNHSKPFMVSMANCGPNTNGSQFFITTVPCPWLDFKHT 121

Query: 135 VFGKVVDGYSVIKDMEKVGSESG-RTSQTVVIEDC 168
           VFGKV  G  ++ D+EKV ++   +  + + I + 
Sbjct: 122 VFGKVTQGSKIVLDIEKVRTDKRDKPLEDIKILNI 156

>2k7n_A Peptidyl-prolyl CIS-trans isomerase-like 1; beta barrel, disorder-order transition, HOOK-like, mRNA processing, mRNA splicing, rotamase; NMR {Homo sapiens} Length = 203

 Score =  220 bits (562), Expect = 4e-74
 Identities = 73/173 (42%), Positives = 96/173 (55%), Gaps = 18/173 (10%)

Query: 3   NPRVFFDILIGKMNKGRVVMELFADVTPKTAENFRALCTGEKGIGMSGKPLHYKGSTFHR 62
            P V+ +      + G +V+EL+    PKT +NF  L    +G        +Y G+ FHR
Sbjct: 11  PPNVYLET-----SMGIIVLELYWKHAPKTCKNFAELA--RRG--------YYNGTKFHR 55

Query: 63  IIPNFMCQGGDFTRGNGTGGESIYGMKFADE-NFKMKHTGPGILSMANAGPNTNGSQFFI 121
           II +FM QGGD T G G GG SIYG +F DE +  +K TG GIL+MANAGP+TNGSQFF+
Sbjct: 56  IIKDFMIQGGDPT-GTGRGGASIYGKQFEDELHPDLKFTGAGILAMANAGPDTNGSQFFV 114

Query: 122 CTQKTPWLDGKHVVFGKVVDGYSVIKDMEKVGSESG-RTSQTVVIEDCGQLAE 173
               T WLDGKH +FG+V  G  ++  +  V + S  R    V I        
Sbjct: 115 TLAPTQWLDGKHTIFGRVCQGIGMVNRVGMVETNSQDRPVDDVKIIKAYPSGG 167

>2x7k_A Peptidyl-prolyl CIS-trans isomerase-like 1; isomerase-immunosuppressant complex, immunosuppressant; HET: MLE MVA BMT ABA SAR; 1.15A {Homo sapiens} PDB: 1xwn_A Length = 166

 Score =  211 bits (540), Expect = 3e-71
 Identities = 69/151 (45%), Positives = 91/151 (60%), Gaps = 17/151 (11%)

Query: 3   NPRVFFDILIGKMNKGRVVMELFADVTPKTAENFRALCTGEKGIGMSGKPLHYKGSTFHR 62
            P V+ +      + G +V+EL+    PKT +NF  L    +G        +Y G+ FHR
Sbjct: 11  PPNVYLET-----SMGIIVLELYWKHAPKTCKNFAELA--RRG--------YYNGTKFHR 55

Query: 63  IIPNFMCQGGDFTRGNGTGGESIYGMKFADE-NFKMKHTGPGILSMANAGPNTNGSQFFI 121
           II +FM QGGD T G G GG SIYG +F DE +  +K TG GIL+MANAGP+TNGSQFF+
Sbjct: 56  IIKDFMIQGGDPT-GTGRGGASIYGKQFEDELHPDLKFTGAGILAMANAGPDTNGSQFFV 114

Query: 122 CTQKTPWLDGKHVVFGKVVDGYSVIKDMEKV 152
               T WLDGKH +FG+V  G  ++  +  V
Sbjct: 115 TLAPTQWLDGKHTIFGRVCQGIGMVNRVGMV 145

>2b71_A Cyclophilin-like protein; structural genomics, structural genomics consortium, SGC, isomerase; 2.50A {Plasmodium yoelii} SCOP: b.62.1.1 Length = 196

 Score =  211 bits (539), Expect = 1e-70
 Identities = 69/155 (44%), Positives = 89/155 (57%), Gaps = 13/155 (8%)

Query: 16  NKGRVVMELFADVTPKTAENFRALCTGEKGIGMSGKPLHYKGSTFHRIIPNFMCQGGDFT 75
           N G   +EL+   +PKT  NF  LC  E G         Y  + FHR+IPNF+ QGGD T
Sbjct: 46  NLGDFEVELYWYHSPKTCLNFYTLC--EMG--------FYDNTIFHRVIPNFVIQGGDPT 95

Query: 76  RGNGTGGESIYGMKFADE-NFKMKHTGPGILSMANAGPNTNGSQFFICTQKTPWLDGKHV 134
            G G GG+SIYG  F DE N ++KHTG GILSM+N GPNTN SQFFI     P LDGKH 
Sbjct: 96  -GTGKGGKSIYGEYFEDEINKELKHTGAGILSMSNNGPNTNSSQFFITLAPLPHLDGKHT 154

Query: 135 VFGKVVDGYSVIKDMEKVGSESG-RTSQTVVIEDC 168
           +F +V    + I+++  V + +  +    + I   
Sbjct: 155 IFARVSKNMTCIENIASVQTTATNKPIFDLKILRT 189

>2poe_A Cyclophilin-like protein, putative; cryptosporidium parvum cyclophilin isomerase, structural genomics; 2.01A {Cryptosporidium parvum iowa II} PDB: 2qer_A Length = 185

 Score =  202 bits (515), Expect = 3e-67
 Identities = 67/172 (38%), Positives = 95/172 (55%), Gaps = 17/172 (9%)

Query: 3   NPRVFFDILIGKMNKGRVVMELFADVTPKTAENFRALCTGEKGIGMSGKPLHYKGSTFHR 62
              ++F  +    N G +  ELF    PK  +NF AL              +YK + FH+
Sbjct: 11  RENLYFQGVRIITNYGDLKFELFCSQCPKACKNFLALSASG----------YYKNTIFHK 60

Query: 63  IIPNFMCQGGDFTRGNGTGGESIYGMKFADENF-KMKHTGPGILSMANAG----PNTNGS 117
            I  F+ QGGD T G G GGESIYG  F DE + ++K+   GILSMA+ G    PNTNGS
Sbjct: 61  NIKGFIIQGGDPT-GTGKGGESIYGRYFDDEIYPELKYDRRGILSMASKGASKKPNTNGS 119

Query: 118 QFFICTQKTPWLDGKHVVFGKVVDGYSVIKDMEKVGS-ESGRTSQTVVIEDC 168
           QFFI     P L+G++V+FGK++DG+  +  +E   S +S +    ++I+D 
Sbjct: 120 QFFITYSSLPQLNGEYVIFGKLIDGFETLNTLENCPSDKSHKPIDEIIIKDI 171

>3bo7_A Peptidyl-prolyl CIS-trans isomerase cyclophilin-T; isomerase-immunosuppressant complex, immunosuppressant, cyclophilin, structural G structural genomics consortium, SGC; HET: BMT; 2.35A {Toxoplasma gondii} Length = 201

 Score =  201 bits (512), Expect = 1e-66
 Identities = 50/166 (30%), Positives = 82/166 (49%), Gaps = 23/166 (13%)

Query: 16  NKGRVVMELFADVTPKTAENFRALCTGEKGIGMSGKPLHYKGSTFHRIIPNFMCQGGDFT 75
            +G + +EL AD+ P+  ++F  LC  +          ++  + FHR I NFM QGG   
Sbjct: 14  TQGSLNIELHADMAPRACDSFLRLCAVK----------YFDDTIFHRCIRNFMIQGGRAE 63

Query: 76  R----GNGTGGESIY-------GMKFADE-NFKMKHTGPGILSMANAGPNTNGSQFFICT 123
                      +S         G  F DE + ++ H G G+LSMAN G ++N S+FFI  
Sbjct: 64  LRQPSKKKEVQQSPRSISGFPGGAPFEDEFDNRLVHQGIGVLSMANDGKHSNLSEFFITF 123

Query: 124 QKTPWLDGKHVVFGKVVDGYSVIKDMEKVGS-ESGRTSQTVVIEDC 168
           +    L+ KH +FG+VV G  V++  EK+ + +  +  +   +E+ 
Sbjct: 124 KSCEHLNNKHTIFGRVVGGLDVLRQWEKLETDKKDKPLKPPKVEEI 169

>2ok3_A Peptidyl-prolyl CIS-trans isomerase-like 3; beta-barrel, helix, disulfide bridge; 2.00A {Homo sapiens} SCOP: b.62.1.1 PDB: 1xyh_A 2oju_A* Length = 161

 Score =  199 bits (509), Expect = 1e-66
 Identities = 72/156 (46%), Positives = 92/156 (58%), Gaps = 14/156 (8%)

Query: 16  NKGRVVMELFADVTPKTAENFRALCTGEKGIGMSGKPLHYKGSTFHRIIPNFMCQGGDFT 75
           + G + +E+F + TPKT ENF ALC             +Y G  FHR I  FM Q GD T
Sbjct: 8   DVGDIKIEVFCERTPKTCENFLALCASN----------YYNGCIFHRNIKGFMVQTGDPT 57

Query: 76  RGNGTGGESIYGMKFADE-NFKMKHTGPGILSMANAGPNTNGSQFFICTQKTPWLDGKHV 134
            G G GG SI+G KF DE +  +KH   G++SMAN GPNTNGSQFFI   K P LD K+ 
Sbjct: 58  -GTGRGGNSIWGKKFEDEYSEYLKHNVRGVVSMANNGPNTNGSQFFITYGKQPHLDMKYT 116

Query: 135 VFGKVVDGYSVIKDMEKV--GSESGRTSQTVVIEDC 168
           VFGKV+DG   + ++EK+    ++ R    V I+D 
Sbjct: 117 VFGKVIDGLETLDELEKLPVNEKTYRPLNDVHIKDI 152

>1zkc_A Peptidyl-prolyl CIS-trans isomerase like 2; CIS-trans isomerization, peptidylprolyl isomerase, protein- folding, structural genomics consortium; 1.65A {Homo sapiens} SCOP: b.62.1.1 Length = 197

 Score =  197 bits (503), Expect = 3e-65
 Identities = 74/156 (47%), Positives = 96/156 (61%), Gaps = 14/156 (8%)

Query: 16  NKGRVVMELFADVTPKTAENFRALCTGEKGIGMSGKPLHYKGSTFHRIIPNFMCQGGDFT 75
           NKG + +EL  D+TPKT ENF  LC  +K         +Y G+ FHR I NF+ QGGD T
Sbjct: 27  NKGDLNLELHCDLTPKTCENFIRLC--KKH--------YYDGTIFHRSIRNFVIQGGDPT 76

Query: 76  RGNGTGGESIYGMKFADE-NFKMKHTGPGILSMANAGPNTNGSQFFICTQKTPWLDGKHV 134
            G GTGGES +G  F DE    + HTG GILSMAN+GPN+N SQFFI  +   +LD KH 
Sbjct: 77  -GTGTGGESYWGKPFKDEFRPNLSHTGRGILSMANSGPNSNRSQFFITFRSCAYLDKKHT 135

Query: 135 VFGKVVDGYSVIKDMEKV--GSESGRTSQTVVIEDC 168
           +FG+VV G+ V+  ME V    ++ R  + + I+  
Sbjct: 136 IFGRVVGGFDVLTAMENVESDPKTDRPKEEIRIDAT 171

>2hq6_A Serologically defined colon cancer antigen 10; protein folding, peptidyl-prolyl CIS-trans isomerase, struct genomics; 1.75A {Homo sapiens} Length = 185

 Score =  189 bits (481), Expect = 5e-62
 Identities = 56/156 (35%), Positives = 83/156 (53%), Gaps = 14/156 (8%)

Query: 16  NKGRVVMELFADVTPKTAENFRALCTGEKGIGMSGKPLHYKGSTFHRIIPNFMCQGGDFT 75
             G + +EL++   PK   NF  LC       +     +Y  + FHR++P F+ QGGD T
Sbjct: 32  TAGDIDIELWSKEAPKACRNFIQLC-------LEA---YYDNTIFHRVVPGFIVQGGDPT 81

Query: 76  RGNGTGGESIYGMKFADE-NFKMKHTGPGILSMANAGPNTNGSQFFICTQKTPWLDGKHV 134
            G G+GGESIYG  F DE + +++    G+++MANAG + NGSQFF    +   L+ KH 
Sbjct: 82  -GTGSGGESIYGAPFKDEFHSRLRFNRRGLVAMANAGSHDNGSQFFFTLGRADELNNKHT 140

Query: 135 VFGKVV-DGYSVIKDMEKVGS-ESGRTSQTVVIEDC 168
           +FGKV  D    +  + +V   +  R      I+ C
Sbjct: 141 IFGKVTGDTVYNMLRLSEVDIDDDERPHNPHKIKSC 176

>1w74_A Peptidyl-prolyl CIS-trans isomerase A; cyclophilin, ppiase, RV0009, rotamase, structural proteomics in europe, spine; 2.6A {Mycobacterium tuberculosis} SCOP: b.62.1.1 Length = 191

 Score =  183 bits (466), Expect = 8e-60
 Identities = 67/160 (41%), Positives = 90/160 (56%), Gaps = 13/160 (8%)

Query: 16  NKGRVVMELFADVTPKTAENFRALCTGEK-----GIGMSGKPLHYKGSTFHRIIPNFMCQ 70
           N+G + + LF +  PKT  NF  L  G K               Y G+ FHR+I  FM Q
Sbjct: 31  NRGDIKIALFGNHAPKTVANFVGLAQGTKDYSTQNASGGPSGPFYDGAVFHRVIQGFMIQ 90

Query: 71  GGDFTRGNGTGGESIYGMKFADE-NFKMKHTGPGILSMANAGPNTNGSQFFICTQKTPWL 129
           GGD T G G GG    G KFADE + +++   P +L+MANAGP TNGSQFFI   KTP L
Sbjct: 91  GGDPT-GTGRGGP---GYKFADEFHPELQFDKPYLLAMANAGPGTNGSQFFITVGKTPHL 146

Query: 130 DGKHVVFGKVVD--GYSVIKDMEKVGSESG-RTSQTVVIE 166
           + +H +FG+V+D     V++ + K  ++   R +  VVIE
Sbjct: 147 NRRHTIFGEVIDAESQRVVEAISKTATDGNDRPTDPVVIE 186

>3bkp_A Cyclophilin; malaria, isomerase, structural GENO structural genomics consortium, SGC; 1.80A {Toxoplasma gondii} Length = 232

 Score =  170 bits (433), Expect = 3e-54
 Identities = 46/172 (26%), Positives = 74/172 (43%), Gaps = 30/172 (17%)

Query: 16  NKGRVVMELFADVTPKTAENFRALCTGEKGIGMSGKPLHYKGSTFHRIIPNFMCQGGDFT 75
           + G + +EL+A   P    NF  LC       + G   +Y  + FHR++ +F+ QGGD T
Sbjct: 29  SLGDLDVELWARECPLACRNFVQLC-------LEG---YYVNTIFHRVVKDFIVQGGDPT 78

Query: 76  RGNGTGG--ESIYGMKFADE-NFKMKHTGPGILSMANAGPN--------------TNGSQ 118
            G G GG   +  G  F  E + ++K    G++ +AN G +              TNG+Q
Sbjct: 79  -GTGRGGADTTFDGKPFDVETHPRLKFRYRGLVGVANLGRSSKDAENDERGRSLGTNGNQ 137

Query: 119 FFICTQKTPWLDGKHVVFGKVV-DGYSVIKDMEKVGS-ESGRTSQTVVIEDC 168
           FFI   +   L+  + +FGKV       +     +   +  R      I+  
Sbjct: 138 FFITLARADVLNNAYTLFGKVTGHTLYNLMKFNDLEVGKEDRPMTPPFIKSV 189

>3s6m_A Peptidyl-prolyl CIS-trans isomerase; seattle structural genomics center for infectious disease; 1.65A {Burkholderia pseudomallei} PDB: 3t1u_A* Length = 167

 Score =  135 bits (343), Expect = 3e-41
 Identities = 46/160 (28%), Positives = 68/160 (42%), Gaps = 29/160 (18%)

Query: 3   NPRVFFDILIGKMNKGRVVMELFADVTPKTAENFRALCTGEKGIGMSGKPLHYKGSTFHR 62
              V         N G + +EL     PKT ENF      +KG        HY G+ FHR
Sbjct: 3   GSMVEL-----HTNHGVIKLELDEAKAPKTVENFLNYV--KKG--------HYDGTIFHR 47

Query: 63  IIPNFMCQGGDFTRGNGTGGESIYGMKFADE-NFKMKHTGPGILSMA-NAGPNTNGSQFF 120
           +I  FM QGG F         +      A+E N  +K+     ++MA    P++  +QFF
Sbjct: 48  VINGFMIQGGGFE-PGLKQKPT--DAPIANEANNGLKND-TYTIAMARTNDPHSATAQFF 103

Query: 121 ICTQKTPWLDGK--------HVVFGKVVDGYSVIKDMEKV 152
           I      +L+          + VFGKVV+G  ++  ++ V
Sbjct: 104 INVNDNEFLNHSSPTPQGWGYAVFGKVVEGQDIVDKIKAV 143

>1v9t_A Cyclophilin B; beta barrel, isomerase-isomerase inhibitor complex; HET: NIT; 1.70A {Escherichia coli} SCOP: b.62.1.1 PDB: 1j2a_A* 1vai_A* 1clh_A Length = 166

 Score =  131 bits (332), Expect = 9e-40
 Identities = 45/158 (28%), Positives = 67/158 (42%), Gaps = 26/158 (16%)

Query: 2   TNPRVFFDILIGKMNKGRVVMELFADVTPKTAENFRALCTGEKGIGMSGKPLHYKGSTFH 61
            +P V         + G + +EL     P + +NF        G         Y  +TFH
Sbjct: 3   GDPHVLL-----TTSAGNIELELDKQKAPVSVQNFVDYV--NSG--------FYNNTTFH 47

Query: 62  RIIPNFMCQGGDFTRGNGTGGESIYGMKFADE-NFKMKHTGPGILSMA-NAGPNTNGSQF 119
           R+IP FM QGG FT       +        +E +  +++T  G ++MA  A  ++  SQF
Sbjct: 48  RVIPGFMIQGGGFT-EQMQQKKP--NPPIKNEADNGLRNT-RGTIAMARTADKDSATSQF 103

Query: 120 FICTQKTPWLDG-----KHVVFGKVVDGYSVIKDMEKV 152
           FI      +LD       + VFGKVV G  V   + +V
Sbjct: 104 FINVADNAFLDHGQRDFGYAVFGKVVKGMDVADKISQV 141

>1lop_A Cyclophilin A; rotamase, isomerase-isomerase inhibitor complex; HET: NIT; 1.80A {Escherichia coli} SCOP: b.62.1.1 PDB: 2nul_A 2rs4_A Length = 164

 Score =  131 bits (332), Expect = 1e-39
 Identities = 47/168 (27%), Positives = 72/168 (42%), Gaps = 29/168 (17%)

Query: 14  KMNKGRVVMELFADVTPKTAENFRALCTGEKGIGMSGKPLHYKGSTFHRIIPNFMCQGGD 73
             N G +V++ F D  P+T +NF   C   +G         Y  + FHR+I  FM QGG 
Sbjct: 5   HTNHGDIVIKTFDDKAPETVKNFLDYC--REG--------FYNNTIFHRVINGFMIQGGG 54

Query: 74  FTRGNGTGGESIYGMKFADE-NFKMKHTGPGILSMA-NAGPNTNGSQFFICTQKTPWLDG 131
           F         +       +E N  +K+T  G L+MA    P++  +QFFI      +L+ 
Sbjct: 55  FE-PGMKQKAT--KEPIKNEANNGLKNT-RGTLAMARTQAPHSATAQFFINVVDNDFLNF 110

Query: 132 K--------HVVFGKVVDGYSVIKDMEKVGSESGRTSQ-----TVVIE 166
                    + VF +VVDG   +  ++ V +      Q      V+IE
Sbjct: 111 SGESLQGWGYCVFAEVVDGMDEVDKIKGVATGRSGMHQDVPKEDVIIE 158

>3rfy_A Peptidyl-prolyl CIS-trans isomerase CYP38, chloro; cyclophilin, peptidyl prolyl isomerase, ppiase, TLP,; 2.39A {Arabidopsis thaliana} Length = 369

 Score =  123 bits (311), Expect = 9e-35
 Identities = 32/172 (18%), Positives = 50/172 (29%), Gaps = 45/172 (26%)

Query: 14  KMNKGRVVMELFADVTPKTAENFRALCTGEKGIGMSGKPLHYKGSTFHRIIPNFMCQGGD 73
            +      + L     P TA NF  L   E+          Y G    R    F+ Q GD
Sbjct: 184 NIEDCVFRIVLDGYNAPVTAGNFVDLV--ERHF--------YDGMEIQRS-DGFVVQTGD 232

Query: 74  FTRGNGTG--------------------GESIYGMKFAD-----ENFKMKHTGPGILSMA 108
                                           YG    +         +     G ++MA
Sbjct: 233 PEGPAEGFIDPSTEKTRTVPLEIMVTGEKTPFYGSTLEELGLYKAQVVIPFNAFGTMAMA 292

Query: 109 NAG--PNTNGSQFFICTQK-------TPWLDGKHVVFGKVVDGYSVIKDMEK 151
                 ++  SQ F   ++       +  LDG++ VFG V D    + D++ 
Sbjct: 293 REEFENDSGSSQVFWLLKESELTPSNSNILDGRYAVFGYVTDNEDFLADLKV 344

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	174
2igv_A	173	Peptidyl-prolyl CIS-trans isomerase 3; rotamase; 1	100.0
1a58_A	177	Cyclophilin; isomerase, ppiase; 1.95A {Brugia mala	100.0
2he9_A	192	NK-tumor recognition protein; cyclosporin, isomera	100.0
2wfi_A	179	Peptidyl-prolyl CIS-trans isomerase G; phosphoprot	100.0
2z6w_A	165	Peptidyl-prolyl CIS-trans isomerase; isomerase-imm	100.0
3pmp_A	164	Cyclophilin A; peptidyl prolyl isomerase, isomeras	100.0
1qng_A	170	Peptidyl-prolyl CIS-trans isomerase; isomerase-imm	100.0
2poy_A	186	Peptidyl-prolyl CIS-trans isomerase; isomerase-imm	100.0
2cmt_A	172	Peptidyl-prolyl CIS-trans isomerase E; rotamase ac	100.0
2r99_A	173	Peptidyl-prolyl CIS-trans isomerase E; CIS-trans i	100.0
1mzw_A	177	Cyclophilin H, U-snRNP-ASSOCIATED cyclophilin; cyc	100.0
3rdd_A	184	Peptidyl-prolyl CIS-trans isomerase A; beta barrel	100.0
2haq_A	172	Cyclophilin; rotamase, proline, isomerase, CIS-tra	100.0
3k2c_A	193	Peptidyl-prolyl CIS-trans isomerase; ssgcid, NIH,	100.0
3ich_A	188	Peptidyl-prolyl CIS-trans isomerase B; beta sandwi	100.0
4fru_A	185	Cyclophilin B, peptidyl-prolyl CIS-trans isomerase	100.0
1z81_A	229	Cyclophilin; structural genomics, structural genom	100.0
2c3b_A	172	Ppiase, cyclophilin; isomerase, 3D domain swapping	100.0
2ose_A	234	Probable peptidyl-prolyl CIS-trans isomerase; cycl	100.0
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	100.0
2x7k_A	166	Peptidyl-prolyl CIS-trans isomerase-like 1; isomer	100.0
2b71_A	196	Cyclophilin-like protein; structural genomics, str	100.0
2fu0_A	160	Cyclophilin, putative; PFE0505W, cyclosporin-bindi	100.0
1w74_A	191	Peptidyl-prolyl CIS-trans isomerase A; cyclophilin	100.0
2poe_A	185	Cyclophilin-like protein, putative; cryptosporidiu	100.0
1zkc_A	197	Peptidyl-prolyl CIS-trans isomerase like 2; CIS-tr	100.0
2ok3_A	161	Peptidyl-prolyl CIS-trans isomerase-like 3; beta-b	100.0
2k7n_A	203	Peptidyl-prolyl CIS-trans isomerase-like 1; beta b	100.0
3bo7_A	201	Peptidyl-prolyl CIS-trans isomerase cyclophilin-T;	100.0
2a2n_A	176	Peptidylprolyl isomerase domain and WD repeat CON;	100.0
1v9t_A	166	Cyclophilin B; beta barrel, isomerase-isomerase in	100.0
2hq6_A	185	Serologically defined colon cancer antigen 10; pro	100.0
1lop_A	164	Cyclophilin A; rotamase, isomerase-isomerase inhib	100.0
3s6m_A	167	Peptidyl-prolyl CIS-trans isomerase; seattle struc	100.0
3bkp_A	232	Cyclophilin; malaria, isomerase, structural GENO s	100.0
3rfy_A	369	Peptidyl-prolyl CIS-trans isomerase CYP38, chloro;	100.0
3kop_A	188	Uncharacterized protein; protein with A cyclophili	95.83
2nnz_A	153	Hypothetical protein; beta-barrel, structural geno	94.95

>2igv_A Peptidyl-prolyl CIS-trans isomerase 3; rotamase; 1.67A {Caenorhabditis elegans} SCOP: b.62.1.1 PDB: 1e3b_A 1e8k_A 1dyw_A 2igw_A 2hqj_A

Probab=100.00  E-value=8.2e-58  Score=344.83  Aligned_cols=172  Identities=74%  Similarity=1.258  Sum_probs=164.7

Q ss_pred             CCCCeEEEEEEECCEeceEEEEEEcCCCChHHHHHHHHHhcCCCCCCCCCccccccCCEEEEeecCceEeeCCCCCCCCC
Q 030603            1 MTNPRVFFDILIGKMNKGRVVMELFADVTPKTAENFRALCTGEKGIGMSGKPLHYKGSTFHRIIPNFMCQGGDFTRGNGT   80 (174)
Q Consensus         1 ~~~p~v~~di~~~~t~~G~i~i~L~~~~aP~~~~nF~~l~~~~~~~~~~g~~~~y~g~~f~ri~~~~~iq~G~~~~~~~~   80 (174)
                      |.||+||||+.+++++.|+|+||||++.||++|+||++||++.++.++.|+..||+|+.||||+|+||||+||+..+++.
T Consensus         1 ~~~~~v~~di~i~~~~~G~i~ieL~~~~aP~t~~NF~~L~~~~~g~g~~~~~~~Y~g~~FhRvi~~f~iQgGd~~~~~G~   80 (173)
T 2igv_A            1 MSRSKVFFDITIGGKASGRIVMELYDDVVPKTAGNFRALCTGENGIGKSGKPLHFKGSKFHRIIPNFMIQGGDFTRGNGT   80 (173)
T ss_dssp             CCCCEEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHTTTCBCTTSSBSCCTTCBCCEEETTTEEEECCTTTSSSS
T ss_pred             CCCCEEEEEEEECCEecceEEEEEeCCCCcHHHHHHHHHhcCCCCCCccCccceECCCEEEEEECCCEEEcCCCCCCCCC
Confidence            89999999999999999999999999999999999999999877766677888999999999999999999999878888


Q ss_pred             CCCcccCCccCCCccCCCCCCCeEEEeeecCCCCCcceEEEEccCCCCCCCCceEEEEEEcChHHHHHHHhCCCCCCCcc
Q 030603           81 GGESIYGMKFADENFKMKHTGPGILSMANAGPNTNGSQFFICTQKTPWLDGKHVVFGKVVDGYSVIKDMEKVGSESGRTS  160 (174)
Q Consensus        81 ~~~~~~~~~~~~e~~~~~~~~~G~v~~~~~~~~~~~s~FfItl~~~~~ld~~~~vfG~V~~G~~vl~~I~~~~~~~~~P~  160 (174)
                      ++.++++.++++|+..++|..+|+||||+.+|++++|||||++.++|+||++|+|||+|++|||||++|+++++++++|.
T Consensus        81 gg~siyg~~f~dE~~~l~h~~~G~lsmAn~gp~tngSQFfIt~~~~~~LDg~~~vFG~Vv~G~dvv~~I~~~~t~~~~P~  160 (173)
T 2igv_A           81 GGESIYGEKFPDENFKEKHTGPGVLSMANAGPNTNGSQFFLCTVKTEWLDGKHVVFGRVVEGLDVVKAVESNGSQSGKPV  160 (173)
T ss_dssp             CCCBTTBSCBCCCCCCSCCCSTTEEEECCSSTTCBSSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTTCCTTSCCS
T ss_pred             CCCccCCCcccCcccccCCCCCeEEEEeeCCCCCcceEEEEEcCCccccCCCeeEEEEEecCHHHHHHHHhCCCCCCCCC
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999889999


Q ss_pred             cceEEeEeeeec
Q 030603          161 QTVVIEDCGQLA  172 (174)
Q Consensus       161 ~~i~I~~~g~l~  172 (174)
                      ++|+|.+||+|+
T Consensus       161 ~~v~I~~~g~l~  172 (173)
T 2igv_A          161 KDCMIADCGQLK  172 (173)
T ss_dssp             SCEEEEEEEEEC
T ss_pred             CCEEEEEeEEEc
Confidence            999999999995

>1a58_A Cyclophilin; isomerase, ppiase; 1.95A {Brugia malayi} SCOP: b.62.1.1 PDB: 1a33_A 1c5f_A*

Probab=100.00  E-value=1.4e-56  Score=339.22  Aligned_cols=170  Identities=59%  Similarity=0.988  Sum_probs=160.3

Q ss_pred             CCeEEEEEEECCEeceEEEEEEcCCCChHHHHHHHHHhcCCCCCCCC-CccccccCCEEEEeecCceEeeCCCCCCCCCC
Q 030603            3 NPRVFFDILIGKMNKGRVVMELFADVTPKTAENFRALCTGEKGIGMS-GKPLHYKGSTFHRIIPNFMCQGGDFTRGNGTG   81 (174)
Q Consensus         3 ~p~v~~di~~~~t~~G~i~i~L~~~~aP~~~~nF~~l~~~~~~~~~~-g~~~~y~g~~f~ri~~~~~iq~G~~~~~~~~~   81 (174)
                      ||+||||+.+++++.|+|+||||++.||++|+||++||++.++.+.. |+..||+|+.||||+|+|||||||+..+++.+
T Consensus         6 ~~~v~~di~i~~~~~G~i~ieL~~~~aP~t~~NF~~L~~~~~g~~~~~g~~~~Y~g~~FhRvi~~f~iQgGd~~~~~g~g   85 (177)
T 1a58_A            6 RRRVFLDVTIDGNLAGRIVMELYNDIAPRTCNNFLMLCTGMAGTGKISGKPLHYKGSTFHRVIKNFMIQGGDFTKGDGTG   85 (177)
T ss_dssp             CEEEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHCTTCBCTTTCSBCCCTTCBEEEEETTTEEEECCCSSSSSSC
T ss_pred             CcEEEEEEEECCEeceeEEEEEcCCCCchHHHHHHHHhcCCcCcccccCCcceeCCCEEEEEECCCEEEeCCccCCCCCC
Confidence            89999999999999999999999999999999999999987765432 55557999999999999999999998788888


Q ss_pred             CCcccCCccCCCccCCCCCCCeEEEeeecCCCCCcceEEEEccCCCCCCCCceEEEEEEcChHHHHHHHhCCCCC-CCcc
Q 030603           82 GESIYGMKFADENFKMKHTGPGILSMANAGPNTNGSQFFICTQKTPWLDGKHVVFGKVVDGYSVIKDMEKVGSES-GRTS  160 (174)
Q Consensus        82 ~~~~~~~~~~~e~~~~~~~~~G~v~~~~~~~~~~~s~FfItl~~~~~ld~~~~vfG~V~~G~~vl~~I~~~~~~~-~~P~  160 (174)
                      ++++++..+++|+..++|+.+|+||||+.+|++++|||||++.++|+||++|+|||+|++|||||++|++++++. ++|.
T Consensus        86 g~si~g~~f~dE~~~~~h~~~G~lsmAn~gp~tngSQFfIt~~~~~~LDg~~~VFG~Vv~G~dvv~~I~~~~~~~~~~P~  165 (177)
T 1a58_A           86 GESIYGGMFDDEEFVMKHDEPFVVSMANKGPNTNGSQFFITTTPAPHLNNIHVVFGKVVSGQEVVTKIEYLKTNSKNRPL  165 (177)
T ss_dssp             CCCTTSSCBCCCCCCSCCCSSSEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTSCBCTTSCBS
T ss_pred             CCcccCCcccCcccCcccCCCeEEEEeeCCCCCceeEEEEECCCCCccCCCEEEEEEEEcCHHHHHHHHhCCCCCCCcCC
Confidence            999999999999999999999999999999999999999999999999999999999999999999999999988 9999


Q ss_pred             cceEEeEeeeec
Q 030603          161 QTVVIEDCGQLA  172 (174)
Q Consensus       161 ~~i~I~~~g~l~  172 (174)
                      ++|+|.+||+|.
T Consensus       166 ~~v~I~~~G~l~  177 (177)
T 1a58_A          166 ADVVILNCGELV  177 (177)
T ss_dssp             SCEEEEEEEEEC
T ss_pred             CCeEEEEeEEEC
Confidence            999999999984

>2he9_A NK-tumor recognition protein; cyclosporin, isomerase, membrane, repeat, rotamase, peptidylprolyl isomerase, structural genomics; 2.00A {Homo sapiens}

Probab=100.00  E-value=3e-56  Score=340.78  Aligned_cols=174  Identities=55%  Similarity=0.956  Sum_probs=161.1

Q ss_pred             CCCCeEEEEEEECCEeceEEEEEEcCCCChHHHHHHHHHhcCCCCCC-CCCccccccCCEEEEeecCceEeeCCCCCCCC
Q 030603            1 MTNPRVFFDILIGKMNKGRVVMELFADVTPKTAENFRALCTGEKGIG-MSGKPLHYKGSTFHRIIPNFMCQGGDFTRGNG   79 (174)
Q Consensus         1 ~~~p~v~~di~~~~t~~G~i~i~L~~~~aP~~~~nF~~l~~~~~~~~-~~g~~~~y~g~~f~ri~~~~~iq~G~~~~~~~   79 (174)
                      +.||+||||+.+.+|+.|+|+||||++.||++|+||++||++.++.+ ..|+..||+|+.||||+|+||||+||+..+++
T Consensus        17 ~~~~~vf~di~i~~t~~G~I~ieL~~~~aP~t~~NF~~L~~g~~g~~~~~~k~~~Y~g~~FhRVi~~fmiQgGd~~~~~G   96 (192)
T 2he9_A           17 RGSPQCHFDIEINREPVGRIMFQLFSDICPKTCKNFLCLCSGEKGLGKTTGKKLCYKGSTFHRVVKNFMIQGGDFSEGNG   96 (192)
T ss_dssp             --CCEEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHCTTCBCTTTCSBSCCTTCBEEEEETTTEEEECCTTTSSS
T ss_pred             cCCCeEEEEEEECCEecceEEEEEcCCCCchHHHHHHHHhcCCCCcccccccCCeECCCEEEEEECCCEEEcCcccCCCC
Confidence            35999999999999999999999999999999999999999887654 23456679999999999999999999987888


Q ss_pred             CCCCcccCCccCCCccCCCCCCCeEEEeeecCCCCCcceEEEEccCCCCCCCCceEEEEEEcChHHHHHHHhCCCCC-CC
Q 030603           80 TGGESIYGMKFADENFKMKHTGPGILSMANAGPNTNGSQFFICTQKTPWLDGKHVVFGKVVDGYSVIKDMEKVGSES-GR  158 (174)
Q Consensus        80 ~~~~~~~~~~~~~e~~~~~~~~~G~v~~~~~~~~~~~s~FfItl~~~~~ld~~~~vfG~V~~G~~vl~~I~~~~~~~-~~  158 (174)
                      .+++++++.++++|+..++|..+|+||||+.+|++++|||||++.++|+||++|+|||+|++|||||++|++++++. ++
T Consensus        97 ~gg~siyg~~f~dE~~~l~h~~~G~lsMAn~gp~tngSQFFIt~~~~~~LDg~~tVFG~Vv~Gmdvv~~I~~~~t~~~~~  176 (192)
T 2he9_A           97 KGGESIYGGYFKDENFILKHDRAFLLSMANRGKHTNGSQFFITTKPAPHLDGVHVVFGLVISGFEVIEQIENLKTDAASR  176 (192)
T ss_dssp             SCCCCTTSSCBCCCCCCSCCCSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTSCBCTTSC
T ss_pred             CCCCcccCCcccCccccCCCCCCeEEEEEeCCCCCcceEEEEEcCCCcccCCCccEEEEEEeCHHHHHHHHcCCcCCCCC
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999987 99


Q ss_pred             cccceEEeEeeeeccC
Q 030603          159 TSQTVVIEDCGQLAEK  174 (174)
Q Consensus       159 P~~~i~I~~~g~l~~~  174 (174)
                      |.++|+|.+||+|.+|
T Consensus       177 P~~~v~I~~~g~l~~~  192 (192)
T 2he9_A          177 PYADVRVIDCGVLATK  192 (192)
T ss_dssp             BSSCEEEEEEEECC--
T ss_pred             CcCCeEEEEeEEEccC
Confidence            9999999999999875

>2wfi_A Peptidyl-prolyl CIS-trans isomerase G; phosphoprotein, PRE-mRNA splicing, alternative splicing, nucleus, rotamase, cyclosporin; HET: OCS; 0.75A {Homo sapiens} PDB: 2wfj_A* 2gw2_A

Probab=100.00  E-value=3.5e-56  Score=337.44  Aligned_cols=170  Identities=57%  Similarity=0.995  Sum_probs=160.3

Q ss_pred             CCCeEEEEEEECCEeceEEEEEEcCCCChHHHHHHHHHhcCCCCCC-CCCccccccCCEEEEeecCceEeeCCCCCCCCC
Q 030603            2 TNPRVFFDILIGKMNKGRVVMELFADVTPKTAENFRALCTGEKGIG-MSGKPLHYKGSTFHRIIPNFMCQGGDFTRGNGT   80 (174)
Q Consensus         2 ~~p~v~~di~~~~t~~G~i~i~L~~~~aP~~~~nF~~l~~~~~~~~-~~g~~~~y~g~~f~ri~~~~~iq~G~~~~~~~~   80 (174)
                      .||+||||+.+.+|+.|+|+|+||++.||++|+||++||++.++.+ ..++..||+|+.||||+|+||||+||+..+++.
T Consensus         8 ~~~~vf~di~i~~t~~G~i~ieL~~~~aP~t~~NF~~L~~g~~g~~~~~~~~~~Y~g~~FhRvi~~f~iQgGd~~~~~g~   87 (179)
T 2wfi_A            8 QRPRCFFDIAINNQPAGRVVFELFSDVCPKTCENFRCLCTGEKGTGKSTQKPLHYKSCLFHRVVKDFMVQGGDFSEGNGR   87 (179)
T ss_dssp             CCCEEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHCTTCBCTTTCSBSCCTTCBEEEEETTTEEEECCTTTSSSS
T ss_pred             CCCeEEEEEEECCccceEEEEEEcCCCCChHHHHHHHHhcCCcCcccccccCCeECCCEEEEEECCCEEEcccccCCCCC
Confidence            3999999999999999999999999999999999999999887654 244566799999999999999999999878888


Q ss_pred             CCCcccCCccCCCccCCCCCCCeEEEeeecCCCCCcceEEEEccCCCCCCCCceEEEEEEcChHHHHHHHhCCCCC-CCc
Q 030603           81 GGESIYGMKFADENFKMKHTGPGILSMANAGPNTNGSQFFICTQKTPWLDGKHVVFGKVVDGYSVIKDMEKVGSES-GRT  159 (174)
Q Consensus        81 ~~~~~~~~~~~~e~~~~~~~~~G~v~~~~~~~~~~~s~FfItl~~~~~ld~~~~vfG~V~~G~~vl~~I~~~~~~~-~~P  159 (174)
                      +++++++..+++|+..++|..+|+||||+.+|++++|||||++.++|+||++|+|||+|++|||||++|++++++. ++|
T Consensus        88 gg~si~g~~f~dE~~~~~h~~~G~lsMAn~gp~tngSQFfIt~~~~~~LDg~~tVFG~Vv~G~dvv~~I~~~~t~~~~~P  167 (179)
T 2wfi_A           88 GGESIYGGFFEDESFAVKHNKEFLLSMANRGKDTNGSQFFITTKPTPHLDGHHVVFGQVISGQEVVREIENQKTDAASKP  167 (179)
T ss_dssp             CCCCTTSSCBCCCCCCSCCCSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTCCBCTTSCB
T ss_pred             CCCcccCCcccccccCcCcCCCeEEEEEeCCCCCcceEEEEEcCCCcccCCCeeEEEEEeCCHHHHHHHHcCCCCCCCCC
Confidence            8999999999999999999999999999999999999999999999999999999999999999999999999987 999


Q ss_pred             ccceEEeEeeee
Q 030603          160 SQTVVIEDCGQL  171 (174)
Q Consensus       160 ~~~i~I~~~g~l  171 (174)
                      .++|+|.+||+|
T Consensus       168 ~~~v~I~~~G~l  179 (179)
T 2wfi_A          168 FAEVRILSCGEL  179 (179)
T ss_dssp             SSCEEEEEEEEC
T ss_pred             CCCeEEEeCeeC
Confidence            999999999987

>2z6w_A Peptidyl-prolyl CIS-trans isomerase; isomerase-immunosuppressant complex, immunosuppressant, cyclophilin D; HET: BMT MLE CIT; 0.96A {Homo sapiens} SCOP: b.62.1.1 PDB: 3rcg_A* 3r49_A* 3r54_A 3r56_A* 3r57_A* 3r59_A* 3rcf_A* 3r4g_A* 3rci_X* 3rck_X* 3rcl_A* 3rd9_X* 3rda_X* 3rdb_A* 3rdc_A* 2bit_X 2biu_X 3qyu_A 3k0m_A 1ak4_A* ...

Probab=100.00  E-value=4.8e-56  Score=332.87  Aligned_cols=165  Identities=72%  Similarity=1.221  Sum_probs=155.9

Q ss_pred             CCCCeEEEEEEECCEeceEEEEEEcCCCChHHHHHHHHHhcCCCCCCCCCccccccCCEEEEeecCceEeeCCCCCCCCC
Q 030603            1 MTNPRVFFDILIGKMNKGRVVMELFADVTPKTAENFRALCTGEKGIGMSGKPLHYKGSTFHRIIPNFMCQGGDFTRGNGT   80 (174)
Q Consensus         1 ~~~p~v~~di~~~~t~~G~i~i~L~~~~aP~~~~nF~~l~~~~~~~~~~g~~~~y~g~~f~ri~~~~~iq~G~~~~~~~~   80 (174)
                      |.||+||||+.+++|+.|+|+||||++.||++|+||++||+|.++.+       |+|+.|||++|+||+|+||+..+++.
T Consensus         1 ~~~~~v~~di~i~~t~~G~i~ieL~~~~aP~t~~NF~~L~~g~~g~~-------Y~g~~fhRvi~~f~iQgGd~~~~~g~   73 (165)
T 2z6w_A            1 MGNPLVYLDVDANGKPLGRVVLELKADVVPKTAENFRALCTGEKGFG-------YKGSTFHRVIPSFMCQAGDFTNHNGT   73 (165)
T ss_dssp             -CCCEEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHTTTSCC-------STTCBEEEEETTTEEEECCTTTSSSS
T ss_pred             CCCCEEEEEEEECCEeeeEEEEEEeCCCCcHHHHHHHHHhccCCCcc-------CcCCEEEEEECCCEEEeCCccCCCCC
Confidence            78999999999999999999999999999999999999998765432       99999999999999999999877888


Q ss_pred             CCCcccCCccCCCccCCCCCCCeEEEeeecCCCCCcceEEEEccCCCCCCCCceEEEEEEcChHHHHHHHhCCCCCCCcc
Q 030603           81 GGESIYGMKFADENFKMKHTGPGILSMANAGPNTNGSQFFICTQKTPWLDGKHVVFGKVVDGYSVIKDMEKVGSESGRTS  160 (174)
Q Consensus        81 ~~~~~~~~~~~~e~~~~~~~~~G~v~~~~~~~~~~~s~FfItl~~~~~ld~~~~vfG~V~~G~~vl~~I~~~~~~~~~P~  160 (174)
                      ++.++++.++++|+..++|.++|+||||+.+|++++|||||++.++|+||++|+|||+|++|||||++|+++++.+++|.
T Consensus        74 gg~si~g~~f~dE~~~l~h~~~G~lsmA~~gp~s~~SQFfI~~~~~~~Ldg~~~vFG~Vv~G~dvv~~I~~~~~~~~~P~  153 (165)
T 2z6w_A           74 GGKSIYGSRFPDENFTLKHVGPGVLSMANAGPNTNGSQFFICTIKTDWLDGKHVVFGHVIEGMDVVKKIESFGSKSGRTS  153 (165)
T ss_dssp             CCCBTTBSCBCCCCCCSCCCSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHHTCCTTSCCS
T ss_pred             CCCcccCCcccCcccccccCCCCEEEEeeCCCCCcccEEEEEcCCCcccCCCeeEEEEEEcCHHHHHHHHhCCCCCCCCC
Confidence            88899999999999899999999999999999999999999999999999999999999999999999999998779999


Q ss_pred             cceEEeEeeeec
Q 030603          161 QTVVIEDCGQLA  172 (174)
Q Consensus       161 ~~i~I~~~g~l~  172 (174)
                      ++|+|.+||+|+
T Consensus       154 ~~v~I~~~g~l~  165 (165)
T 2z6w_A          154 KKIVITDCGQLS  165 (165)
T ss_dssp             SCEEEEEEEECC
T ss_pred             CcEEEEEeEEEC
Confidence            999999999984

>3pmp_A Cyclophilin A; peptidyl prolyl isomerase, isomerase-immunosuppressant compl; HET: BMT; 1.47A {Moniliophthora perniciosa} SCOP: b.62.1.1 PDB: 3o7t_A

Probab=100.00  E-value=9.3e-56  Score=331.21  Aligned_cols=164  Identities=62%  Similarity=1.079  Sum_probs=156.2

Q ss_pred             CCCeEEEEEEECCEeceEEEEEEcCCCChHHHHHHHHHhcCCCCCCCCCccccccCCEEEEeecCceEeeCCCCCCCCCC
Q 030603            2 TNPRVFFDILIGKMNKGRVVMELFADVTPKTAENFRALCTGEKGIGMSGKPLHYKGSTFHRIIPNFMCQGGDFTRGNGTG   81 (174)
Q Consensus         2 ~~p~v~~di~~~~t~~G~i~i~L~~~~aP~~~~nF~~l~~~~~~~~~~g~~~~y~g~~f~ri~~~~~iq~G~~~~~~~~~   81 (174)
                      +||+|||||.+++|+.|+|+||||++.||++|+||++||++.++.+       |+|+.|||++|+||+|+||+..+++.+
T Consensus         1 ~~p~vf~di~i~~t~~G~i~ieL~~~~aP~t~~nF~~L~~g~~g~~-------Y~g~~fhRvi~~f~iQgGd~~~~~g~g   73 (164)
T 3pmp_A            1 AMANVFFNISINDKPEGRIVFKLYDEAVPKTAKNFRELATGQHGFG-------YKDSIFHRVIPQFMLQGGDFTRHNGTG   73 (164)
T ss_dssp             CCCCEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHTTTSCS-------STTCBEEEEETTTEEEECCTTTSSSSC
T ss_pred             CCCEEEEEEEECCEEeeEEEEEEeCCCCcHHHHHHHHHhcccCCCc-------ccCCEEEEEECCCeEEeCCCCCCCCCC
Confidence            5999999999999999999999999999999999999998765533       999999999999999999987788899


Q ss_pred             CCcccCCccCCCccCCCCCCCeEEEeeecCCCCCcceEEEEccCCCCCCCCceEEEEEEcChHHHHHHHhCCCCCCCccc
Q 030603           82 GESIYGMKFADENFKMKHTGPGILSMANAGPNTNGSQFFICTQKTPWLDGKHVVFGKVVDGYSVIKDMEKVGSESGRTSQ  161 (174)
Q Consensus        82 ~~~~~~~~~~~e~~~~~~~~~G~v~~~~~~~~~~~s~FfItl~~~~~ld~~~~vfG~V~~G~~vl~~I~~~~~~~~~P~~  161 (174)
                      +.++++.++++|+..++|..+|+||||+.++++++|||||++.+.|+||++|+|||+|++|||||++|++++++.++|.+
T Consensus        74 g~si~g~~~~dE~~~l~h~~~G~lsma~~g~~t~~SQFfIt~~~~~~Ld~~~~vFG~Vv~G~~vv~~I~~~~~~~~~P~~  153 (164)
T 3pmp_A           74 GKSIYGEKFADENFQVKHTKPGLLSMANAGANTNGSQFFITTVPTSWLDGKHVVFGEVIEGLDIVRKVEGKGSASGKTNA  153 (164)
T ss_dssp             CCBTTBSCBCCCCCCSCCCSTTEEEECBSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTTCCTTCCCSS
T ss_pred             CcccCCccccccccccCcCCCcEEEEeeCCCCCcccEEEEECCCChhhCCCccEEEEEeCCHHHHHHHHhCCCCCCCccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999998899999


Q ss_pred             ceEEeEeeeec
Q 030603          162 TVVIEDCGQLA  172 (174)
Q Consensus       162 ~i~I~~~g~l~  172 (174)
                      +|+|.+||+|+
T Consensus       154 ~v~I~~cg~l~  164 (164)
T 3pmp_A          154 TIKITDCGTVA  164 (164)
T ss_dssp             CEEEEEEEEC-
T ss_pred             CEEEEeCeEEC
Confidence            99999999984

>1qng_A Peptidyl-prolyl CIS-trans isomerase; isomerase-immunosuppressant complex, cyclophilin-cyclosporin complex, immunosuppressant, cyclophilin; HET: BMT; 2.1A {Plasmodium falciparum} SCOP: b.62.1.1 PDB: 1qnh_A*

Probab=100.00  E-value=6.8e-56  Score=333.51  Aligned_cols=169  Identities=67%  Similarity=1.187  Sum_probs=159.3

Q ss_pred             CCCeEEEEEEECCEeceEEEEEEcCCCChHHHHHHHHHhcCCCCCCCCCccccccCCEEEEeecCceEeeCCCCCCCCCC
Q 030603            2 TNPRVFFDILIGKMNKGRVVMELFADVTPKTAENFRALCTGEKGIGMSGKPLHYKGSTFHRIIPNFMCQGGDFTRGNGTG   81 (174)
Q Consensus         2 ~~p~v~~di~~~~t~~G~i~i~L~~~~aP~~~~nF~~l~~~~~~~~~~g~~~~y~g~~f~ri~~~~~iq~G~~~~~~~~~   81 (174)
                      .||+||||+.+++++.|+|+||||++.||++|+||++||++. +.++.|+..+|+++.||||+|+||||+||+..+++.+
T Consensus         2 ~~~~v~~di~i~~~~~G~i~ieL~~~~aP~t~~NF~~L~~~~-g~g~~~~~~~Y~g~~FhRvi~~f~iQgGd~~~~~g~g   80 (170)
T 1qng_A            2 KRSKVFFDISIDNSNAGRIIFELFSDITPRTCENFRALCTGE-KIGSRGKNLHYKNSIFHRIIPQFMCQGGDITNGNGSG   80 (170)
T ss_dssp             CSCEEEEEEEESSSEEEEEEEEECTTTCHHHHHHHHHHHHTC-EECTTSSEECCTTCBCCEEETTTEEEECCTTTSSSSC
T ss_pred             CCCEEEEEEeECCEeceeEEEEEcCCCCCHHHHHHHHHhccC-CcCccCccceECCCEEEEEECCCEEEcCCccCCCCCC
Confidence            489999999999999999999999999999999999999864 3345667777999999999999999999998788888


Q ss_pred             CCcccCCccCCCccCCCCCCCeEEEeeecCCCCCcceEEEEccCCCCCCCCceEEEEEEcChHHHHHHHhCCCCCCCccc
Q 030603           82 GESIYGMKFADENFKMKHTGPGILSMANAGPNTNGSQFFICTQKTPWLDGKHVVFGKVVDGYSVIKDMEKVGSESGRTSQ  161 (174)
Q Consensus        82 ~~~~~~~~~~~e~~~~~~~~~G~v~~~~~~~~~~~s~FfItl~~~~~ld~~~~vfG~V~~G~~vl~~I~~~~~~~~~P~~  161 (174)
                      +.++++.++++|+..++|.++|+||||+.+|++++|||||++.++|+||++|+|||+|++|||||++|+++++.+++|.+
T Consensus        81 g~si~g~~f~dE~~~l~h~~~G~lsmAn~gp~tngSQFfIt~~~~~~Ldg~~~vFG~Vv~G~dvv~~I~~~~t~~~~P~~  160 (170)
T 1qng_A           81 GESIYGRSFTDENFNMKHDQPGLLSMANAGPNTNSSQFFITLVPCPWLDGKHVVFGKVIEGMNVVREMEKEGAKSGYVKR  160 (170)
T ss_dssp             CCBTTBSCBCCCCCCSCCCSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTTCCTTCCCSS
T ss_pred             CccccCCcccccccccccCCCCEEEEeecCCCCcccEEEEECCCCcccCCCeeEEEEEECCHHHHHHHHhCCCCCCCCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999997799999


Q ss_pred             ceEEeEeeee
Q 030603          162 TVVIEDCGQL  171 (174)
Q Consensus       162 ~i~I~~~g~l  171 (174)
                      +|+|.+||+|
T Consensus       161 ~v~I~~cG~l  170 (170)
T 1qng_A          161 SVVITDCGEL  170 (170)
T ss_dssp             CEEEEEEEEC
T ss_pred             CeEEEeceeC
Confidence            9999999987

>2poy_A Peptidyl-prolyl CIS-trans isomerase; isomerase-immunosuppressant complex, immunosuppressant, cyclophilin, isomerase, S genomics, structural genomics consortium; HET: BMT; 1.80A {Cryptosporidium parvum iowa II} PDB: 2plu_A*

Probab=100.00  E-value=1.3e-55  Score=335.70  Aligned_cols=169  Identities=68%  Similarity=1.141  Sum_probs=160.8

Q ss_pred             CCCeEEEEEEECCEeceEEEEEEcCCCChHHHHHHHHHhcCCCCCCCCCccccccCCEEEEeecCceEeeCCCCCCCCCC
Q 030603            2 TNPRVFFDILIGKMNKGRVVMELFADVTPKTAENFRALCTGEKGIGMSGKPLHYKGSTFHRIIPNFMCQGGDFTRGNGTG   81 (174)
Q Consensus         2 ~~p~v~~di~~~~t~~G~i~i~L~~~~aP~~~~nF~~l~~~~~~~~~~g~~~~y~g~~f~ri~~~~~iq~G~~~~~~~~~   81 (174)
                      .||+||||+.+++++.|+|+||||++.||++|+||++||++.++.+..|+..+|+|+.||||+|+||||+||+..+++.+
T Consensus        18 ~~~~v~~di~i~~t~~G~I~ieL~~~~aP~t~~NF~~L~~g~~g~~~~~~~~~Y~g~~FhRVi~~f~iQgGd~~~~~G~g   97 (186)
T 2poy_A           18 GNPVVYFDISIGQTPAGRITMELFADKVPITAENFRALCTGEKGMGQSGKPLCYTGSFFHRIIPQFMIQGGDFTRGDGTG   97 (186)
T ss_dssp             CCCEEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHTTTCBCTTSSBSCCTTCBCCEEETTTEEEECCTTTSSSSC
T ss_pred             CCCEEEEEEeECCEecccEEEEEeCCCCcHHHHHHHHHhcccCCccccCccceECCCEEEEEeCCCEEEeCCCCCCCCCC
Confidence            58999999999999999999999999999999999999998777767788888999999999999999999998788888


Q ss_pred             CCcccCCccCCCccCCCCCCCeEEEeeecCCCCCcceEEEEccCCCCCCCCceEEEEEEcChHHHHHHHhCCCCCCCccc
Q 030603           82 GESIYGMKFADENFKMKHTGPGILSMANAGPNTNGSQFFICTQKTPWLDGKHVVFGKVVDGYSVIKDMEKVGSESGRTSQ  161 (174)
Q Consensus        82 ~~~~~~~~~~~e~~~~~~~~~G~v~~~~~~~~~~~s~FfItl~~~~~ld~~~~vfG~V~~G~~vl~~I~~~~~~~~~P~~  161 (174)
                      +.++++.++++|+..++|..+|+||||+.+|++++|||||++.++|+||++|+|||+|++|||||++|+++++++++|.+
T Consensus        98 g~si~g~~f~dE~~~l~h~~~G~lsMAn~gpntngSQFFIt~~~~~~LDg~~tVFG~Vv~Gmdvv~~I~~~~t~~~~P~~  177 (186)
T 2poy_A           98 GESIYGSKFRDENFVYTHDAPFLLSMANAGPNTNGSQFFITTVPCPWLDGKHVVFGKVLEGMEVVKSIEKCGSQNGKPTK  177 (186)
T ss_dssp             CCCTTC-CBCCCCCCSCCCSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHHTCCTTSCCSS
T ss_pred             CCccCCCcccCcccccccCCCcEEEEeeCCCCCcccEEEEECCCCcccCCCeeEEEEEecCHHHHHHHHhCCCCCCCCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999998899999


Q ss_pred             ceEEeEeee
Q 030603          162 TVVIEDCGQ  170 (174)
Q Consensus       162 ~i~I~~~g~  170 (174)
                      +|+|.+||+
T Consensus       178 ~v~I~~cG~  186 (186)
T 2poy_A          178 SVCITASGV  186 (186)
T ss_dssp             CEEEEEEEC
T ss_pred             CEEEEeCCC
Confidence            999999995

>2cmt_A Peptidyl-prolyl CIS-trans isomerase E; rotamase activity, rotamase, RNA-binding, cyclosporin, cyclophilin, beta-barrel; 1.50A {Schistosoma mansoni} PDB: 2ck1_A

Probab=100.00  E-value=2.1e-55  Score=331.11  Aligned_cols=165  Identities=67%  Similarity=1.219  Sum_probs=155.7

Q ss_pred             CCCCeEEEEEEECCEeceEEEEEEcCCCChHHHHHHHHHhcCCCCCCCCCccccccCCEEEEeecCceEeeCCCCCCCCC
Q 030603            1 MTNPRVFFDILIGKMNKGRVVMELFADVTPKTAENFRALCTGEKGIGMSGKPLHYKGSTFHRIIPNFMCQGGDFTRGNGT   80 (174)
Q Consensus         1 ~~~p~v~~di~~~~t~~G~i~i~L~~~~aP~~~~nF~~l~~~~~~~~~~g~~~~y~g~~f~ri~~~~~iq~G~~~~~~~~   80 (174)
                      |.||+||||+.+++|+.|+|+||||++.||++|+||++||++.++.+       |+|+.||||+|+||||+||+..+++.
T Consensus         8 ~~~~~v~~di~i~~t~~G~i~ieL~~~~aP~t~~NF~~L~~~~~g~~-------Y~g~~FhRvi~~f~iQgGd~~~~~G~   80 (172)
T 2cmt_A            8 RNLPRVFFDIRIGNGDAGRIVMELRSDIVPRTAENFRALCTGERGFG-------YHNCCFHRVIPQFMCQGGDFVKGDGT   80 (172)
T ss_dssp             -CCCEEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHTTTSCS-------STTCBEEEEETTTEEEECCTTTSSSS
T ss_pred             CCCCEEEEEEEECCeecceEEEEEcCCCCCHHHHHHHHHhccCCCce-------ECCCEEEEEECCCEEEcCCccCCCCC
Confidence            46999999999999999999999999999999999999998754422       99999999999999999999878888


Q ss_pred             CCCcccCCccCCCccCCCCCCCeEEEeeecCCCCCcceEEEEccCCCCCCCCceEEEEEEcChHHHHHHHhCCCCCCCcc
Q 030603           81 GGESIYGMKFADENFKMKHTGPGILSMANAGPNTNGSQFFICTQKTPWLDGKHVVFGKVVDGYSVIKDMEKVGSESGRTS  160 (174)
Q Consensus        81 ~~~~~~~~~~~~e~~~~~~~~~G~v~~~~~~~~~~~s~FfItl~~~~~ld~~~~vfG~V~~G~~vl~~I~~~~~~~~~P~  160 (174)
                      ++.++++.++++|+..++|..+|+||||+.+|++++|||||++.++|+||++|+|||+|++|||||++|+++++++++|.
T Consensus        81 gg~si~g~~f~dE~~~l~h~~~G~lsmA~~gp~t~gSQFfIt~~~~~~LDg~~tvFG~Vv~G~dvv~~I~~~~~~~~~P~  160 (172)
T 2cmt_A           81 GGKSIYGRKFDDENFQLRHEGFGVLSMANSGPNTNGSQFFICTTKCDWLDGKHVVFGRVVDGQNVVKKMESVGSKSGKVK  160 (172)
T ss_dssp             CCCBTTBSCBCCCCCCSCCCSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHGGGGCCTTCCCS
T ss_pred             CCCccCCCcccccccCcccCCceEEEEeeCCCCCcccEEEEECCCCCccCCCeeEEEEEEcCHHHHHHHHhCCCCCCCCC
Confidence            88999999999999999999999999999999999999999999999999999999999999999999999999889999


Q ss_pred             cceEEeEeeeec
Q 030603          161 QTVVIEDCGQLA  172 (174)
Q Consensus       161 ~~i~I~~~g~l~  172 (174)
                      ++|+|.+||+|+
T Consensus       161 ~~v~I~~~g~l~  172 (172)
T 2cmt_A          161 EPVIISRCGELI  172 (172)
T ss_dssp             SCEEEEEEEEEC
T ss_pred             CCEEEEEeEeEC
Confidence            999999999984

>2r99_A Peptidyl-prolyl CIS-trans isomerase E; CIS-trans isomerization, structural genomics consortium, SGC, alternative splicing, mRNA processing; 1.61A {Homo sapiens} SCOP: b.62.1.1 PDB: 3uch_A 1zmf_A

Probab=100.00  E-value=3.3e-55  Score=330.51  Aligned_cols=165  Identities=64%  Similarity=1.129  Sum_probs=156.1

Q ss_pred             CCCCeEEEEEEECCEeceEEEEEEcCCCChHHHHHHHHHhcCCCCCCCCCccccccCCEEEEeecCceEeeCCCCCCCCC
Q 030603            1 MTNPRVFFDILIGKMNKGRVVMELFADVTPKTAENFRALCTGEKGIGMSGKPLHYKGSTFHRIIPNFMCQGGDFTRGNGT   80 (174)
Q Consensus         1 ~~~p~v~~di~~~~t~~G~i~i~L~~~~aP~~~~nF~~l~~~~~~~~~~g~~~~y~g~~f~ri~~~~~iq~G~~~~~~~~   80 (174)
                      |.||+||||+.+++|+.|+|+||||++.||++|+||++||++.++.       +|+|+.|||++|+||||+||+..+++.
T Consensus         9 ~~~~~v~~di~i~~t~~G~i~ieL~~~~aP~t~~NF~~L~~g~~g~-------~Y~g~~FhRvi~~f~iQgGd~~~~~g~   81 (173)
T 2r99_A            9 RSNPQVYMDIKIGNKPAGRIQMLLRSDVVPMTAENFRCLCTHEKGF-------GFKGSSFHRIIPQFMCQGGDFTNHNGT   81 (173)
T ss_dssp             -CCCEEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHTTTSC-------CSTTCBEEEEETTTEEEECCTTTSSSS
T ss_pred             cCCCEEEEEEEECCccceeEEEEECCCCCcHHHHHHHHHhcccCCc-------eecCCEEEEeeCCCEEEeCCcCCCCCC
Confidence            5699999999999999999999999999999999999999876542       299999999999999999999877888


Q ss_pred             CCCcccCCccCCCccCCCCCCCeEEEeeecCCCCCcceEEEEccCCCCCCCCceEEEEEEcChHHHHHHHhCCCCCCCcc
Q 030603           81 GGESIYGMKFADENFKMKHTGPGILSMANAGPNTNGSQFFICTQKTPWLDGKHVVFGKVVDGYSVIKDMEKVGSESGRTS  160 (174)
Q Consensus        81 ~~~~~~~~~~~~e~~~~~~~~~G~v~~~~~~~~~~~s~FfItl~~~~~ld~~~~vfG~V~~G~~vl~~I~~~~~~~~~P~  160 (174)
                      ++.++++..+++|+..++|..+|+||||+.++++++|||||++.++|+||++|+|||+|++|||||++|+++++++++|.
T Consensus        82 gg~si~g~~f~dE~~~l~h~~~G~lsmA~~gp~t~gSQFfIt~~~~~~LDg~~tVFG~Vv~G~dvv~~I~~~~~~~~~P~  161 (173)
T 2r99_A           82 GGKSIYGKKFDDENFILKHTGPGLLSMANSGPNTNGSQFFLTCDKTDWLDGKHVVFGEVTEGLDVLRQIEAQGSKDGKPK  161 (173)
T ss_dssp             CCCBTTBSCBCCCCCCSCCCSSSEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTTCCTTCCCS
T ss_pred             CCCccCCCcccCcccCcccCCCcEEEEccCCCCCcccEEEEECCCCCccCCCeeEEEEEEcCHHHHHHHHhCCCCCCCCC
Confidence            88999999999999999999999999999999999999999999999999999999999999999999999999889999


Q ss_pred             cceEEeEeeeec
Q 030603          161 QTVVIEDCGQLA  172 (174)
Q Consensus       161 ~~i~I~~~g~l~  172 (174)
                      ++|+|.+||+|.
T Consensus       162 ~~v~I~~cG~l~  173 (173)
T 2r99_A          162 QKVIIADCGEYV  173 (173)
T ss_dssp             SCEEEEEEEECC
T ss_pred             CCeEEEEeeeEC
Confidence            999999999984

>1mzw_A Cyclophilin H, U-snRNP-ASSOCIATED cyclophilin; cyclophilin, peptidyl-prolyl-CIS/trans isomerase, spliceosome, U4/U6-60K protein, WD protein; 2.00A {Homo sapiens} SCOP: b.62.1.1 PDB: 1qoi_A

Probab=100.00  E-value=3.3e-55  Score=331.56  Aligned_cols=168  Identities=59%  Similarity=1.046  Sum_probs=158.7

Q ss_pred             CCCeEEEEEEECCEeceEEEEEEcCCCChHHHHHHHHHhcCCCCCCCCCccccccCCEEEEeecCceEeeCCCCCCCCCC
Q 030603            2 TNPRVFFDILIGKMNKGRVVMELFADVTPKTAENFRALCTGEKGIGMSGKPLHYKGSTFHRIIPNFMCQGGDFTRGNGTG   81 (174)
Q Consensus         2 ~~p~v~~di~~~~t~~G~i~i~L~~~~aP~~~~nF~~l~~~~~~~~~~g~~~~y~g~~f~ri~~~~~iq~G~~~~~~~~~   81 (174)
                      .||+||||+.+++|+.|+|+||||++.||++|+||++||+++.+.  .|+..+|+|+.||||+|+|||||||+..+++.+
T Consensus         9 ~~~~v~~di~i~~t~~G~i~ieL~~~~aP~t~~NF~~L~~~~~g~--~g~~~~Y~g~~FhRvi~~f~iQgGd~~~~~G~g   86 (177)
T 1mzw_A            9 VNPVVFFDVSIGGQEVGRMKIELFADVVPKTAENFRQFCTGEFRK--DGVPIGYKGSTFHRVIKDFMIQGGDFVNGDGTG   86 (177)
T ss_dssp             CCCEEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHTCCEE--TTEECSSTTCBCCEEETTTEEEECCTTTSSSCC
T ss_pred             CCCEEEEEEEECCeeceeEEEEEcCCCCcHHHHHHHHHHhcccCC--cCccceECCCEEEEEECCCEEEcCCcccCCCCC
Confidence            489999999999999999999999999999999999999887643  456667999999999999999999998788888


Q ss_pred             CCcccCCccCCCccCCCCCCCeEEEeeecCCCCCcceEEEEccCCCCCCCCceEEEEEEcChHHHHHHHhCCCCC-CCcc
Q 030603           82 GESIYGMKFADENFKMKHTGPGILSMANAGPNTNGSQFFICTQKTPWLDGKHVVFGKVVDGYSVIKDMEKVGSES-GRTS  160 (174)
Q Consensus        82 ~~~~~~~~~~~e~~~~~~~~~G~v~~~~~~~~~~~s~FfItl~~~~~ld~~~~vfG~V~~G~~vl~~I~~~~~~~-~~P~  160 (174)
                      +.++++.++++|+..++|..+|+||||+.+|++++|||||++.++|+||++|+|||+|++|||||++|++++++. ++|.
T Consensus        87 g~si~g~~f~dE~~~l~h~~~G~lsmAn~gp~tngSQFfIt~~~~~~LDg~~~VFG~Vv~G~dvv~~I~~~~t~~~~~P~  166 (177)
T 1mzw_A           87 VASIYRGPFADENFKLRHSAPGLLSMANSGPSTNGCQFFITCSKCDWLDGKHVVFGKIIDGLLVMRKIENVPTGPNNKPK  166 (177)
T ss_dssp             CCCTTSSCBCCCCCCSCCCSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTSCBCGGGCBS
T ss_pred             CCccCCCcccCcccccccCCCCEEEEccCCCCCcceEEEEECCCCCccCCCeeEEEEEeCCHHHHHHHHhCCcCCCCCCC
Confidence            999999999999999999999999999999999999999999999999999999999999999999999999976 9999


Q ss_pred             cceEEeEeeee
Q 030603          161 QTVVIEDCGQL  171 (174)
Q Consensus       161 ~~i~I~~~g~l  171 (174)
                      ++|+|.+||+|
T Consensus       167 ~~v~I~~cG~l  177 (177)
T 1mzw_A          167 LPVVISQCGEM  177 (177)
T ss_dssp             SCEEEEEEEEC
T ss_pred             CCEEEEeceeC
Confidence            99999999987

>3rdd_A Peptidyl-prolyl CIS-trans isomerase A; beta barrel, cytosolic, inhibito isomerase-isomerase inhibitor complex; HET: EA4; 2.14A {Homo sapiens}

Probab=100.00  E-value=7.8e-55  Score=331.26  Aligned_cols=165  Identities=73%  Similarity=1.234  Sum_probs=157.1

Q ss_pred             CCCCeEEEEEEECCEeceEEEEEEcCCCChHHHHHHHHHhcCCCCCCCCCccccccCCEEEEeecCceEeeCCCCCCCCC
Q 030603            1 MTNPRVFFDILIGKMNKGRVVMELFADVTPKTAENFRALCTGEKGIGMSGKPLHYKGSTFHRIIPNFMCQGGDFTRGNGT   80 (174)
Q Consensus         1 ~~~p~v~~di~~~~t~~G~i~i~L~~~~aP~~~~nF~~l~~~~~~~~~~g~~~~y~g~~f~ri~~~~~iq~G~~~~~~~~   80 (174)
                      |.||+||||+.+++++.|+|+|+||++.||++|+||++||+++++.+       |+|+.|||++|+|||||||+..+++.
T Consensus        20 ~~~p~v~~di~i~~~~~G~I~ieL~~~~aP~t~~NF~~L~~~~~g~~-------Y~g~~FhRvi~~f~iQgGd~~~~~g~   92 (184)
T 3rdd_A           20 MVNPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFG-------YKGSCFHRIIPGFMCQGGDFTRHNGT   92 (184)
T ss_dssp             -CCCEEEEEEEETTEEEEEEEEEECTTTSHHHHHHHHHHHHTTTSCS-------STTCBCCEEETTTEEEECCTTTSSSS
T ss_pred             CCCCEEEEEEeECCEeeeEEEEEEeCCCCcHHHHHHHHHhccCcCcc-------cCCCEEEEccCCcEEEeCCCCCCCCC
Confidence            57999999999999999999999999999999999999998776543       99999999999999999998878889


Q ss_pred             CCCcccCCccCCCccCCCCCCCeEEEeeecCCCCCcceEEEEccCCCCCCCCceEEEEEEcChHHHHHHHhCCCCCCCcc
Q 030603           81 GGESIYGMKFADENFKMKHTGPGILSMANAGPNTNGSQFFICTQKTPWLDGKHVVFGKVVDGYSVIKDMEKVGSESGRTS  160 (174)
Q Consensus        81 ~~~~~~~~~~~~e~~~~~~~~~G~v~~~~~~~~~~~s~FfItl~~~~~ld~~~~vfG~V~~G~~vl~~I~~~~~~~~~P~  160 (174)
                      ++.++++..+++|+..++|..+|+||||+.++++++|||||++++.|+||++|+|||+|++|||||++|+++++++++|.
T Consensus        93 gg~si~g~~~~de~~~l~h~~~G~lsmA~~gp~s~gSQFfIt~~~~~~LDg~~tVFG~Vv~G~dvv~~I~~~~~~~g~P~  172 (184)
T 3rdd_A           93 GGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGKVKEGMNIVEAMERFGSRNGKTS  172 (184)
T ss_dssp             CCCBTTBSCBCCCCCCSCCCSTTEEEECCSSTTCBSSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTTCCTTSCCS
T ss_pred             CCcccCCCcccCcccccccCCCcEEEEEeCCCCCcccEEEEEeCCchhhCCCceEEEEEecCHHHHHHHHhcCCCCCCCc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999889999


Q ss_pred             cceEEeEeeeec
Q 030603          161 QTVVIEDCGQLA  172 (174)
Q Consensus       161 ~~i~I~~~g~l~  172 (174)
                      ++|+|.+||+|+
T Consensus       173 ~~v~I~~cG~l~  184 (184)
T 3rdd_A          173 KKITIADCGQLE  184 (184)
T ss_dssp             SCEEEEEEEECC
T ss_pred             CCeEEEeCeEEC
Confidence            999999999985

>2haq_A Cyclophilin; rotamase, proline, isomerase, CIS-trans, protozoa, KAla-AZAR.; 1.97A {Leishmania donovani} PDB: 3eov_A* 3bt8_A

Probab=100.00  E-value=7.6e-55  Score=327.77  Aligned_cols=163  Identities=59%  Similarity=0.991  Sum_probs=154.6

Q ss_pred             CCCCeEEEEEEECCEeceEEEEEEcCCCChHHHHHHHHHhcCCCCCCCCCccccccCCEEEEeecCceEeeCCCCCCCCC
Q 030603            1 MTNPRVFFDILIGKMNKGRVVMELFADVTPKTAENFRALCTGEKGIGMSGKPLHYKGSTFHRIIPNFMCQGGDFTRGNGT   80 (174)
Q Consensus         1 ~~~p~v~~di~~~~t~~G~i~i~L~~~~aP~~~~nF~~l~~~~~~~~~~g~~~~y~g~~f~ri~~~~~iq~G~~~~~~~~   80 (174)
                      |.||+||||+.+++|+.|+|+||||++.||++|+||++||+|.++.+       |+|+.|||++|+|||||||+..+++.
T Consensus         9 ~~~~~v~~di~i~~t~~G~i~ieL~~~~aP~t~~NF~~L~~g~~g~~-------Y~g~~FhRvi~~f~iQgGd~~~~~g~   81 (172)
T 2haq_A            9 EVTAKVYFDVMIDSEPLGRITIGLFGKDAPLTTENFRQLCTGEHGFG-------YKDSIFHRVIQNFMIQGGDFTNFDGT   81 (172)
T ss_dssp             CCCEEEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHTTTSCC-------STTCBCCEEETTTEEEECCTTTSSSS
T ss_pred             CCCCeEEEEEEECCEecceEEEEEeCCCCcHHHHHHHHHhccCCCcc-------cCCCEEEEEECCCEEecCCccCCCCC
Confidence            46899999999999999999999999999999999999998765432       99999999999999999997778888


Q ss_pred             CCCcccCCccCCCccCCCCCCCeEEEeeecCCCCCcceEEEEccCCCCCCCCceEEEEEEcChHHHHHHHhCCCCC-CCc
Q 030603           81 GGESIYGMKFADENFKMKHTGPGILSMANAGPNTNGSQFFICTQKTPWLDGKHVVFGKVVDGYSVIKDMEKVGSES-GRT  159 (174)
Q Consensus        81 ~~~~~~~~~~~~e~~~~~~~~~G~v~~~~~~~~~~~s~FfItl~~~~~ld~~~~vfG~V~~G~~vl~~I~~~~~~~-~~P  159 (174)
                      ++.++++.++++|+..++|. +|+||||+.++++++|||||++.++|+||++|+|||+|++||+||++|++++++. ++|
T Consensus        82 gg~si~g~~f~dE~~~l~h~-~G~lsmAn~gp~tngSQFfIt~~~~~~LDg~~~vFG~Vv~G~dvv~~I~~~~t~~~~~P  160 (172)
T 2haq_A           82 GGKSIYGEKFADENLNVKHF-VGALSMANAGPNTNGSQFFITTAPTPWLDGRHVVFGKVLDGMDVVLRIEKTKTNSHDRP  160 (172)
T ss_dssp             CCCCSSSSCBCCCCCCSCCC-TTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTSCBCGGGCB
T ss_pred             CCccccCCcccCcCCCcccC-ceEEEEccCCCCCcccEEEEECCCCCccCCCEeEEEEEeCCHHHHHHHHhCCcCCCCcC
Confidence            88999999999998899999 9999999999999999999999999999999999999999999999999999988 799


Q ss_pred             ccceEEeEeeee
Q 030603          160 SQTVVIEDCGQL  171 (174)
Q Consensus       160 ~~~i~I~~~g~l  171 (174)
                      .++|+|.+||+|
T Consensus       161 ~~~v~I~~~g~l  172 (172)
T 2haq_A          161 VKPVKIVASGEL  172 (172)
T ss_dssp             SSCEEEEEEEEC
T ss_pred             CCCeEEEEeEEC
Confidence            999999999987

>3k2c_A Peptidyl-prolyl CIS-trans isomerase; ssgcid, NIH, niaid, SBRI, UW, decode, cytoplasm, rotamase, structural genomics; HET: PG5; 1.95A {Encephalitozoon cuniculi}

Probab=100.00  E-value=1.9e-54  Score=331.26  Aligned_cols=166  Identities=60%  Similarity=1.006  Sum_probs=157.0

Q ss_pred             CCCCeEEEEEEECCEeceEEEEEEcCCCChHHHHHHHHHhcCCCCCCCCCccccccCCEEEEeecCceEeeCCCCCCCCC
Q 030603            1 MTNPRVFFDILIGKMNKGRVVMELFADVTPKTAENFRALCTGEKGIGMSGKPLHYKGSTFHRIIPNFMCQGGDFTRGNGT   80 (174)
Q Consensus         1 ~~~p~v~~di~~~~t~~G~i~i~L~~~~aP~~~~nF~~l~~~~~~~~~~g~~~~y~g~~f~ri~~~~~iq~G~~~~~~~~   80 (174)
                      |.||+||||+.+++|+.|+|+|+||++.||++|+||++||++.++.+       |+|+.||||+|+|+|||||+..+++.
T Consensus        25 ~~~p~v~~di~i~~t~~G~I~ieL~~~~aP~tv~NF~~L~~g~~g~~-------Y~g~~FhRvi~~f~iQgGd~~~~~g~   97 (193)
T 3k2c_A           25 EASGNVYFDVYANEESLGRIVMKLEDDIVPKTAKNFRTLCERPKGEG-------YKGSTFHRIIPGFMVQGGDYTAHNGT   97 (193)
T ss_dssp             -CTTCEEEEEEETTEEEEEEEEEECTTTSHHHHHHHHHHHHSCTTSS-------STTCBEEEEETTTEEEECCTTTSSSS
T ss_pred             cCCCEEEEEEeECCEEeeEEEEEEcCCCChHHHHHHHHHhccccCCc-------ccCCEEEEEeCCCEEEeCCCCCCCCc
Confidence            56999999999999999999999999999999999999998765432       99999999999999999998878888


Q ss_pred             CCCcccCCccCCCccCCCCCCCeEEEeeecCCCCCcceEEEEccCCCCCCCCceEEEEEEcChHHHHHHHhCCCCCCCcc
Q 030603           81 GGESIYGMKFADENFKMKHTGPGILSMANAGPNTNGSQFFICTQKTPWLDGKHVVFGKVVDGYSVIKDMEKVGSESGRTS  160 (174)
Q Consensus        81 ~~~~~~~~~~~~e~~~~~~~~~G~v~~~~~~~~~~~s~FfItl~~~~~ld~~~~vfG~V~~G~~vl~~I~~~~~~~~~P~  160 (174)
                      ++.++++..+++|+..++|..+|+|||++.++++++|||||++++.|+||++|+|||+|++|||||++|+++++++++|.
T Consensus        98 gg~si~g~~f~dE~~~l~h~~~G~lsmAn~gp~t~gSQFFIt~~~~~~LDg~~tVFG~Vv~Gmdvv~~I~~~~t~~g~P~  177 (193)
T 3k2c_A           98 GGRSIYGEKFPDENFELKHTKEGILSMANCGAHTNGSQFFITLGKTQWLDEKHVVFGEVVEGMDVVHKIAKYGSESGQVK  177 (193)
T ss_dssp             CCCCTTSSCBCCCCCCSCCCSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTTCCTTCCCC
T ss_pred             CCcccCCCcccccccccccCCCcEEEEEeCCCCCCccEEEEECCCCcccCCCccEEEEEeCCHHHHHHHHhcCCCCCcCc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             --cceEEeEeeeecc
Q 030603          161 --QTVVIEDCGQLAE  173 (174)
Q Consensus       161 --~~i~I~~~g~l~~  173 (174)
                        ++|+|.+||+|..
T Consensus       178 ~~~~v~I~~cG~l~~  192 (193)
T 3k2c_A          178 KGYRIEIRDCGVLGS  192 (193)
T ss_dssp             TTCCEEEEEEEECC-
T ss_pred             cCccEEEEEceEeCC
Confidence              9999999999974

>3ich_A Peptidyl-prolyl CIS-trans isomerase B; beta sandwich, cyclosporin, endoplasmic reticulum, glycoprot isomerase, rotamase; 1.20A {Homo sapiens} PDB: 3ici_A* 1cyn_A* 2esl_A* 2rmc_A* 1h0p_A 1xo7_A 1xq7_A*

Probab=100.00  E-value=3.2e-53  Score=323.18  Aligned_cols=163  Identities=60%  Similarity=1.075  Sum_probs=154.6

Q ss_pred             CCeEEEEEEECCEeceEEEEEEcCCCChHHHHHHHHHhcCCCCCCCCCccccccCCEEEEeecCceEeeCCCCCCCCCCC
Q 030603            3 NPRVFFDILIGKMNKGRVVMELFADVTPKTAENFRALCTGEKGIGMSGKPLHYKGSTFHRIIPNFMCQGGDFTRGNGTGG   82 (174)
Q Consensus         3 ~p~v~~di~~~~t~~G~i~i~L~~~~aP~~~~nF~~l~~~~~~~~~~g~~~~y~g~~f~ri~~~~~iq~G~~~~~~~~~~   82 (174)
                      +|+|||||.+++|+.|+|+|+||++.||++|+||++||++.++.+       |+|+.||||+|+|||||||+..+++.++
T Consensus        15 ~~~v~~di~i~~t~~G~i~ieL~~~~aP~t~~NF~~L~~g~~g~~-------Y~g~~FhRvi~~f~iQgGd~~~~~g~gg   87 (188)
T 3ich_A           15 TVKVYFDLRIGDEDVGRVIFGLFGKTVPKTVDNFVALATGEKGFG-------YKNSKFHRVIKDFMIQGGDFTRGDGTGG   87 (188)
T ss_dssp             EEEEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHTTTSCS-------STTCBCCEEETTTEEEECCTTTSSSSCC
T ss_pred             CCeEEEEEEECCEeceeEEEEEcCCCCcHHHHHHHHHhcccCCcc-------ccCCEEEEEECCCEEEcCCccCCCCCCC
Confidence            689999999999999999999999999999999999998765432       9999999999999999999777888889


Q ss_pred             CcccCCccCCCccCCCCCCCeEEEeeecCCCCCcceEEEEccCCCCCCCCceEEEEEEcChHHHHHHHhCCCCC-CCccc
Q 030603           83 ESIYGMKFADENFKMKHTGPGILSMANAGPNTNGSQFFICTQKTPWLDGKHVVFGKVVDGYSVIKDMEKVGSES-GRTSQ  161 (174)
Q Consensus        83 ~~~~~~~~~~e~~~~~~~~~G~v~~~~~~~~~~~s~FfItl~~~~~ld~~~~vfG~V~~G~~vl~~I~~~~~~~-~~P~~  161 (174)
                      .++++.++++|+..++|+.+|+||||+.++++++|||||++.++|+||++|+|||+|++||+||++|++++++. ++|.+
T Consensus        88 ~si~g~~f~dE~~~l~h~~~G~lsmAn~gp~tngSQFfIt~~~~~~LDg~~tVFG~Vv~G~dvv~~I~~~~~~~~~~P~~  167 (188)
T 3ich_A           88 KSIYGERFPDENFKLKHYGPGWVSMANAGKDTNGSQFFITTVKTAWLDGKHVVFGKVLEGMEVVRKVESTKTDSRDKPLK  167 (188)
T ss_dssp             CBTTBSCBCCCCCCSCCCSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTSCBCTTSCBSS
T ss_pred             ccccCCcccccccCcccCCCeEEEEccCCCCCcccEEEEECCCCcccCCCeeEEEEEeCCHHHHHHHHhCCcCCCCeECC
Confidence            99999999999889999999999999999999999999999999999999999999999999999999999988 79999


Q ss_pred             ceEEeEeeeec
Q 030603          162 TVVIEDCGQLA  172 (174)
Q Consensus       162 ~i~I~~~g~l~  172 (174)
                      +|+|.+||+|.
T Consensus       168 ~v~I~~~~~l~  178 (188)
T 3ich_A          168 DVIIADCGKIE  178 (188)
T ss_dssp             CEEEEEEEEEE
T ss_pred             CEEEEEeEEEe
Confidence            99999999983

>4fru_A Cyclophilin B, peptidyl-prolyl CIS-trans isomerase; cyclophilin-type ppiase, peptidyl-prolyl CIS-trans isomerase chaperone, foldase; HET: ME2 PEG; 1.10A {Equus caballus} PDB: 4frv_A* 3ich_A 3ici_A* 1cyn_A* 2esl_A* 2rmc_A* 1h0p_A 1xo7_A 1xq7_A*

Probab=100.00  E-value=4e-53  Score=322.47  Aligned_cols=163  Identities=59%  Similarity=1.049  Sum_probs=155.5

Q ss_pred             CCeEEEEEEECCEeceEEEEEEcCCCChHHHHHHHHHhcCCCCCCCCCccccccCCEEEEeecCceEeeCCCCCCCCCCC
Q 030603            3 NPRVFFDILIGKMNKGRVVMELFADVTPKTAENFRALCTGEKGIGMSGKPLHYKGSTFHRIIPNFMCQGGDFTRGNGTGG   82 (174)
Q Consensus         3 ~p~v~~di~~~~t~~G~i~i~L~~~~aP~~~~nF~~l~~~~~~~~~~g~~~~y~g~~f~ri~~~~~iq~G~~~~~~~~~~   82 (174)
                      +|+||||+.+++++.|+|+||||++.||++|+||++||++.+|.       +|+|+.|||++|+|||||||+..+++.++
T Consensus        12 ~~~v~~di~i~~~~~G~i~ieL~~~~aP~t~~NF~~L~~~~~g~-------~Y~g~~FhRvi~~f~iQgGd~~~~~g~gg   84 (185)
T 4fru_A           12 TVKVYFDLRIGDEDIGRVVIGLFGKTVPKTVDNFVALATGEKGF-------GYKDSKFHRVIKDFMIQGGDFTRGDGTGG   84 (185)
T ss_dssp             EEEEEEEEEETTEEEEEEEEEECTTTSHHHHHHHHHHHHTTTSC-------CSTTCBCCEEETTTEEEECCTTTSSSSCC
T ss_pred             CcEEEEEEEECCEecceEEEEEeCCCCcHHHHHHHHHHhcCCCC-------eEcCCEEEEeeCCCeEEECCCCCCCCCCC
Confidence            78999999999999999999999999999999999999875432       49999999999999999999988888999


Q ss_pred             CcccCCccCCCccCCCCCCCeEEEeeecCCCCCcceEEEEccCCCCCCCCceEEEEEEcChHHHHHHHhCCCCC-CCccc
Q 030603           83 ESIYGMKFADENFKMKHTGPGILSMANAGPNTNGSQFFICTQKTPWLDGKHVVFGKVVDGYSVIKDMEKVGSES-GRTSQ  161 (174)
Q Consensus        83 ~~~~~~~~~~e~~~~~~~~~G~v~~~~~~~~~~~s~FfItl~~~~~ld~~~~vfG~V~~G~~vl~~I~~~~~~~-~~P~~  161 (174)
                      .++++..+++|+..++|..+|+|||++.++++++|||||++.+.|+||++|+|||+|++||+||++|++++++. ++|.+
T Consensus        85 ~si~g~~f~de~~~~~h~~~G~lsma~~gp~t~~SQFfI~~~~~~~Ld~~~~vFG~Vv~G~dvv~~I~~~~t~~~~~P~~  164 (185)
T 4fru_A           85 KSIYGERFPDENFKLKHYGPGWVSMANAGKDTNGSQFFITTVKTAWLDGKHVVFGKVLEGMEVVRKVETTKTDGRDKPLK  164 (185)
T ss_dssp             CBTTBSCBCCCCCCSCCCSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTSCBCTTSCBSS
T ss_pred             ccccCCccCccccccCcCCCeEEEEeeCCCCCcceEEEEEeCCCcccCCCccEEEEEeCCHHHHHHHHhCCCCCCCcCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999987 99999


Q ss_pred             ceEEeEeeeec
Q 030603          162 TVVIEDCGQLA  172 (174)
Q Consensus       162 ~i~I~~~g~l~  172 (174)
                      +|+|.+||+|.
T Consensus       165 ~v~I~~~g~l~  175 (185)
T 4fru_A          165 DVTIADCGKIE  175 (185)
T ss_dssp             CEEEEEEEEEE
T ss_pred             CEEEEEceEEe
Confidence            99999999985

>1z81_A Cyclophilin; structural genomics, structural genomics consortium, SGC, isomerase; 2.80A {Plasmodium yoelii yoelii} SCOP: b.62.1.1

Probab=100.00  E-value=3e-53  Score=331.12  Aligned_cols=168  Identities=51%  Similarity=0.931  Sum_probs=159.1

Q ss_pred             CCCeEEEEEEECCEeceEEEEEEcCCCChHHHHHHHHHhcCCCCCCCCCccccccCCEEEEeecCceEeeCCCCCCCCCC
Q 030603            2 TNPRVFFDILIGKMNKGRVVMELFADVTPKTAENFRALCTGEKGIGMSGKPLHYKGSTFHRIIPNFMCQGGDFTRGNGTG   81 (174)
Q Consensus         2 ~~p~v~~di~~~~t~~G~i~i~L~~~~aP~~~~nF~~l~~~~~~~~~~g~~~~y~g~~f~ri~~~~~iq~G~~~~~~~~~   81 (174)
                      .||+||||+.+++|+.|+|+||||++.||++|+||++||+++++.  .|+..+|+|+.||||+|+|||||||+..+++.+
T Consensus        58 ~~~~V~~disi~~t~~G~I~ieL~~d~aP~tv~NF~~L~~~~~g~--~g~~~~Y~gt~FHRVi~~FmiQgGD~~~g~G~G  135 (229)
T 1z81_A           58 SNPVVFMDINLGNNFLGKFKFELFQNIVPKTSENFRQFCTGEYKV--NNLPVGYKNTIFHRVIKEFMIQGGDFINHNGSG  135 (229)
T ss_dssp             TCCEEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHTCCBS--SSSBCSSTTEECCEEETTTEEEECCTTTSSSCC
T ss_pred             CCcEEEEEEeECCeecccEEEEEcCCCCCHHHHHHHHHhhCCCCC--cCCCceECCCEEEEEeCCCEEEcCCCcCCCCCC
Confidence            489999999999999999999999999999999999999987653  256668999999999999999999998788899


Q ss_pred             CCcccCCccCCCccCCCCCCCeEEEeeecCCCCCcceEEEEccCCCCCCCCceEEEEEE--cChHHHHHHHhCCCCC--C
Q 030603           82 GESIYGMKFADENFKMKHTGPGILSMANAGPNTNGSQFFICTQKTPWLDGKHVVFGKVV--DGYSVIKDMEKVGSES--G  157 (174)
Q Consensus        82 ~~~~~~~~~~~e~~~~~~~~~G~v~~~~~~~~~~~s~FfItl~~~~~ld~~~~vfG~V~--~G~~vl~~I~~~~~~~--~  157 (174)
                      +.++++.++++|+..++|.++|+||||+.+|++++|||||++.++|+||++|+|||+|+  +||+||++|++++++.  +
T Consensus       136 g~siyg~~f~dE~~~l~h~~~G~LsMAn~gpntngSQFFIt~~~~~~LDg~~tVFG~Vv~~eGmdVv~~I~~~~t~~~~~  215 (229)
T 1z81_A          136 SLSIYGEKFDDENFDIKHDKEGLLSMANSGPNTNGCQFFITTKKCEWLDGKNVVFGRIIDNDSLLLLKKIENVSVTPYIY  215 (229)
T ss_dssp             CCBTTBSCCCCCCCCSCCCSTTEEEECCSSSSCCCSCEEEESSCCGGGBTTBCEEEEECSHHHHHHHHHHHHSCBCTTTC
T ss_pred             CCccCCCcccccccccccCCCcEEEeccCCCCCcccEEEEECCCCcccCCCeeEEEEEEecCcHHHHHHHHhCCCCCCCC
Confidence            99999999999999999999999999999999999999999999999999999999999  9999999999999987  8


Q ss_pred             CcccceEEeEeeee
Q 030603          158 RTSQTVVIEDCGQL  171 (174)
Q Consensus       158 ~P~~~i~I~~~g~l  171 (174)
                      +|.++|+|.+||+|
T Consensus       216 ~P~~~V~I~~cG~l  229 (229)
T 1z81_A          216 KPKIPINVVECGEL  229 (229)
T ss_dssp             CBSSCEEEEEEEEC
T ss_pred             CCCCCeEEEeCeeC
Confidence            99999999999987

>2c3b_A Ppiase, cyclophilin; isomerase, 3D domain swapping, misfolding, Asp F 11, allergen, rotamase; 1.85A {Aspergillus fumigatus} SCOP: b.62.1.1

Probab=100.00  E-value=2.6e-52  Score=314.40  Aligned_cols=160  Identities=66%  Similarity=1.094  Sum_probs=122.0

Q ss_pred             eEEEEEEEC--C---EeceEEEEEEcCCCChHHHHHHHHHhcCCCCCCCCCccccccCCEEEEeecCceEeeCCCCCCCC
Q 030603            5 RVFFDILIG--K---MNKGRVVMELFADVTPKTAENFRALCTGEKGIGMSGKPLHYKGSTFHRIIPNFMCQGGDFTRGNG   79 (174)
Q Consensus         5 ~v~~di~~~--~---t~~G~i~i~L~~~~aP~~~~nF~~l~~~~~~~~~~g~~~~y~g~~f~ri~~~~~iq~G~~~~~~~   79 (174)
                      +|||||.++  +   |++|+|+|+||++.||++|+||++||++.++.+       |+++.|||++|+||||+||+..+++
T Consensus         4 ~vf~di~i~~~~~~~T~~G~i~ieL~~~~aP~t~~NF~~L~~g~~g~~-------Y~g~~fhRvi~~f~iQgGd~~~~~g   76 (172)
T 2c3b_A            4 QVFFDVEYAPVGTAETKVGRIVFNLFDKDVPKTAKNFRELCKRPAGEG-------YRESTFHRIIPNFMIQGGDFTRGNG   76 (172)
T ss_dssp             CEEEEEEECCTTCSCCEEEEEEEEECTTTSHHHHHHHHHHHHSCTTTS-------STTCBCCEEETTTEEEECC------
T ss_pred             EEEEEEEeCCCCceecccccEEEEEcCCCCcHHHHHHHHHhccCCCcc-------cCCCEEEEEeCCCEEEeCCcCCCCC
Confidence            899999998  4   667999999999999999999999998765433       9999999999999999999766788


Q ss_pred             CCCCcccCCccCCCccCCCCCCCeEEEeeecCCCCCcceEEEEccCCCCCCCCceEEEEEEc--ChHHHHHHHhCCCCCC
Q 030603           80 TGGESIYGMKFADENFKMKHTGPGILSMANAGPNTNGSQFFICTQKTPWLDGKHVVFGKVVD--GYSVIKDMEKVGSESG  157 (174)
Q Consensus        80 ~~~~~~~~~~~~~e~~~~~~~~~G~v~~~~~~~~~~~s~FfItl~~~~~ld~~~~vfG~V~~--G~~vl~~I~~~~~~~~  157 (174)
                      .+++++++.++++|+..++|+.+|+||||+.+|++++|||||++.++|+||++|+|||+|++  ||+||++|++++++.+
T Consensus        77 ~gg~si~g~~f~dE~~~~~h~~~G~lsmA~~gp~t~gSQFfIt~~~~~~LDg~~tvFG~Vv~~~G~dvv~~I~~~~t~~~  156 (172)
T 2c3b_A           77 TGGRSIYGDKFADENFSRKHDKKGILSMANAGPNTNGSQFFITTAVTSWLDGKHVVFGEVADEKSYSVVKEIEALGSSSG  156 (172)
T ss_dssp             ----------------CHHHHHTCEEEEC---------CEEEECSCCTTCCSCCEEEEEECSHHHHHHHHHHHTTCCTTS
T ss_pred             CCCcccCCCcccCcccccccCCCeEEEEeeCCCCCcccEEEEECCCCCccCCCeeEEEEEEecCCHHHHHHHHhCCCCCC
Confidence            88899999999999889999999999999999999999999999999999999999999999  9999999999999884


Q ss_pred             --CcccceEEeEeeee
Q 030603          158 --RTSQTVVIEDCGQL  171 (174)
Q Consensus       158 --~P~~~i~I~~~g~l  171 (174)
                        +|.++|+|.+||+|
T Consensus       157 ~~~P~~~v~I~~cG~l  172 (172)
T 2c3b_A          157 SVRSNTRPKIVNCGEL  172 (172)
T ss_dssp             CCCSSSCCEEEEEEEC
T ss_pred             CccCCCCeEEEeCeeC
Confidence              99999999999987

>2ose_A Probable peptidyl-prolyl CIS-trans isomerase; cyclophilin; 2.04A {Mimivirus}

Probab=100.00  E-value=6.2e-51  Score=319.80  Aligned_cols=170  Identities=29%  Similarity=0.504  Sum_probs=148.2

Q ss_pred             CCCeEEEEEEECCEeceEEEEEEcCCCChHHHHHHHHHhcCCCCCC------CC----CccccccCCEEEEeecCceEee
Q 030603            2 TNPRVFFDILIGKMNKGRVVMELFADVTPKTAENFRALCTGEKGIG------MS----GKPLHYKGSTFHRIIPNFMCQG   71 (174)
Q Consensus         2 ~~p~v~~di~~~~t~~G~i~i~L~~~~aP~~~~nF~~l~~~~~~~~------~~----g~~~~y~g~~f~ri~~~~~iq~   71 (174)
                      .||+|||||.+++|+.|+|+||||++.||++|+||++||++.+.+.      +.    |+...|+|+.||||+|+|||||
T Consensus        13 ~~p~v~~di~i~~t~~G~I~ieL~~d~aP~tv~NF~~L~~g~~~~~~p~~~~~~~~~~G~~~~Y~gt~FHRVi~~FmiQg   92 (234)
T 2ose_A           13 KNPRVYMDIVLNNEIIGRLQIKLFRDAFPAGVENFVQLTNGKTYRVNSNGTGKYKYNRHINRTYEGCKFHNVLHNNYIVS   92 (234)
T ss_dssp             SSCEEEEEEEETTEEEEEEEEEECGGGCHHHHHHHHHHHHTCCCC---------------CCCSTTCBCCEEETTTEEEE
T ss_pred             CCCEEEEEEEECCcccceEEEEEcCCCCcHHHHHHHHHhcCCccccccccccccccccCCceEECCcEEEEEECCCEEEc
Confidence            4899999999999999999999999999999999999998762110      11    3222399999999999999999


Q ss_pred             CCCCCCCCCCCCcccCCc-----cCCCccCCCCCCCeEEEeee----cCCCCCcceEEEEccC------CCCCCCCceEE
Q 030603           72 GDFTRGNGTGGESIYGMK-----FADENFKMKHTGPGILSMAN----AGPNTNGSQFFICTQK------TPWLDGKHVVF  136 (174)
Q Consensus        72 G~~~~~~~~~~~~~~~~~-----~~~e~~~~~~~~~G~v~~~~----~~~~~~~s~FfItl~~------~~~ld~~~~vf  136 (174)
                      ||+..+++.++.++++..     +.  ++.++|..+|+||||+    .++++++|||||++.+      .|+||++|+||
T Consensus        93 Gd~~~g~G~Gg~siyg~~~~p~~f~--~~~l~h~~~G~lsMAn~~~~~gpntngSQFFIt~~~~~~~~g~p~LDg~~tVF  170 (234)
T 2ose_A           93 GDIYNSNGSSAGTVYCDEPIPPVFG--DYFYPHESKGLLSLVPYTDESGNRYYDSTFMITLDDIRPSNVLDELDRDQVVI  170 (234)
T ss_dssp             CCCC----CCCCCTTTTCCBCCCCC--SCCCCSCSTTEEEECCEECTTSCEEBCSCEEEESSCCCTTSSGGGSCTTSEEE
T ss_pred             CCccCCCCCCCccccCCccCccccc--CcCccCCCCCEEEEecccccCCCCCccceEEEEecCccccCCCcccCCCeeEE
Confidence            997778888888888876     44  4578998999999999    8899999999999999      99999999999


Q ss_pred             EEEEcChHHHHHHHhCCCCC-CCcccceEEeEeeeecc
Q 030603          137 GKVVDGYSVIKDMEKVGSES-GRTSQTVVIEDCGQLAE  173 (174)
Q Consensus       137 G~V~~G~~vl~~I~~~~~~~-~~P~~~i~I~~~g~l~~  173 (174)
                      |+|++|||||++|++++++. ++|.++|+|.+|++|.+
T Consensus       171 G~Vv~GmdVv~~I~~~~t~~~~~P~~~V~I~~~~~l~~  208 (234)
T 2ose_A          171 GQVYGGLDVLDKINSMIKPYAGRKYPTFSIGKCGAYLD  208 (234)
T ss_dssp             EEEEECHHHHHHHHHHTCCCTTCCCCCEEEEEEEECCC
T ss_pred             EEEeCCHHHHHHHHhCCcCCCCCccCCEEEEEEEEecC
Confidence            99999999999999999988 99999999999999975

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=100.00  E-value=5.2e-50  Score=333.71  Aligned_cols=171  Identities=66%  Similarity=1.097  Sum_probs=162.4

Q ss_pred             CCeEEEEEEECCEeceEEEEEEcCCCChHHHHHHHHHhcCCCCCCCC-CccccccCCEEEEeecCceEeeCCCCCCCCCC
Q 030603            3 NPRVFFDILIGKMNKGRVVMELFADVTPKTAENFRALCTGEKGIGMS-GKPLHYKGSTFHRIIPNFMCQGGDFTRGNGTG   81 (174)
Q Consensus         3 ~p~v~~di~~~~t~~G~i~i~L~~~~aP~~~~nF~~l~~~~~~~~~~-g~~~~y~g~~f~ri~~~~~iq~G~~~~~~~~~   81 (174)
                      ||+||||+.+++++.|+|+|+||++.||+||+||++||++.++.+.. |+..||+|+.||||+|+|||||||+..+++.+
T Consensus        15 ~~~v~~~~~~~~~~~G~i~~~l~~~~~P~t~~nf~~l~~~~~~~~~~~g~~~~y~~~~fhrv~~~f~~q~Gd~~~~~g~g   94 (370)
T 1ihg_A           15 NPRVFFDVDIGGERVGRIVLELFADIVPKTAENFRALCTGEKGIGPTTGKPLHFKGCPFHRIIKKFMIQGGDFSNQNGTG   94 (370)
T ss_dssp             SCEEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHCTTCBCTTTSSBSCCTTCBEEEEETTTEEEECCTTTSSSSC
T ss_pred             CCeEEEEEEECCEecccEEEEEcCCCCchHHHHHHHHcCCCcCcCccCCCcceeCCcEeEEEECCcEEECCCCCCCCCCC
Confidence            89999999999999999999999999999999999999998776533 66678999999999999999999998888999


Q ss_pred             CCcccCCccCCCccCCCCCCCeEEEeeecCCCCCcceEEEEccCCCCCCCCceEEEEEEcChHHHHHHHhCCCCCCCccc
Q 030603           82 GESIYGMKFADENFKMKHTGPGILSMANAGPNTNGSQFFICTQKTPWLDGKHVVFGKVVDGYSVIKDMEKVGSESGRTSQ  161 (174)
Q Consensus        82 ~~~~~~~~~~~e~~~~~~~~~G~v~~~~~~~~~~~s~FfItl~~~~~ld~~~~vfG~V~~G~~vl~~I~~~~~~~~~P~~  161 (174)
                      +.++++.++++|+..++|+.+|+|||++.+|++++||||||+.+.|+||++|+|||+|++||+|+++|+.++++.++|..
T Consensus        95 ~~~~~~~~~~~e~~~~~~~~~g~l~ma~~~~~~~~sqffi~~~~~~~ld~~~~vfG~v~~g~~v~~~i~~~~~~~~~P~~  174 (370)
T 1ihg_A           95 GESIYGEKFEDENFHYKHDKEGLLSMANAGSNTNGSQFFITTVPTPHLDGKHVVFGQVIKGMGVAKILENVEVKGEKPAK  174 (370)
T ss_dssp             CCBTTBSCBCCCCCCBCCCSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTSCEETTEESS
T ss_pred             CCCCCCCCcCCCcCCcCCCCCeEEEEeeCCCCCCCceEEEeCCCCcccCCCceEEEEEecCHHHHHHHHcCCCCCCccce
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999988899999


Q ss_pred             ceEEeEeeeecc
Q 030603          162 TVVIEDCGQLAE  173 (174)
Q Consensus       162 ~i~I~~~g~l~~  173 (174)
                      +|+|.+|+++.+
T Consensus       175 ~v~I~~~g~l~~  186 (370)
T 1ihg_A          175 LCVIAECGELKE  186 (370)
T ss_dssp             CEEEEEEEEECT
T ss_pred             eEEEEEEEEecc
Confidence            999999999864

>2x7k_A Peptidyl-prolyl CIS-trans isomerase-like 1; isomerase-immunosuppressant complex, immunosuppressant; HET: MLE MVA BMT ABA SAR; 1.15A {Homo sapiens} PDB: 1xwn_A

Probab=100.00  E-value=6e-49  Score=294.52  Aligned_cols=154  Identities=47%  Similarity=0.835  Sum_probs=144.2

Q ss_pred             CCCeEEEEEEECCEeceEEEEEEcCCCChHHHHHHHHHhcCCCCCCCCCccccccCCEEEEeecCceEeeCCCCCCCCCC
Q 030603            2 TNPRVFFDILIGKMNKGRVVMELFADVTPKTAENFRALCTGEKGIGMSGKPLHYKGSTFHRIIPNFMCQGGDFTRGNGTG   81 (174)
Q Consensus         2 ~~p~v~~di~~~~t~~G~i~i~L~~~~aP~~~~nF~~l~~~~~~~~~~g~~~~y~g~~f~ri~~~~~iq~G~~~~~~~~~   81 (174)
                      .+++|.|+     |+.|+|+||||++.||++|+||++||+       .|   ||+|+.|||++|+|+|||||+. +++.+
T Consensus        10 ~~~~v~l~-----t~~G~i~ieL~~~~aP~t~~NF~~L~~-------~g---~Y~g~~fhRvi~~f~iQgGd~~-~~g~g   73 (166)
T 2x7k_A           10 QPPNVYLE-----TSMGIIVLELYWKHAPKTCKNFAELAR-------RG---YYNGTKFHRIIKDFMIQGGDPT-GTGRG   73 (166)
T ss_dssp             CCSEEEEE-----ETTEEEEEEECTTTCHHHHHHHHHHHH-------HT---TTTTEECCEEETTTEEEECCTT-SSSSC
T ss_pred             CCCEEEEE-----eCCCcEEEEEccCCCCHHHHHHHHHHh-------cC---CCCCCEEEEEECCCEEEcCCCC-CCCCC
Confidence            47888888     899999999999999999999999995       33   4999999999999999999986 67788


Q ss_pred             CCcccCCccCCCcc-CCCCCCCeEEEeeecCCCCCcceEEEEccCCCCCCCCceEEEEEEcChHHHHHHHhCCCCC-CCc
Q 030603           82 GESIYGMKFADENF-KMKHTGPGILSMANAGPNTNGSQFFICTQKTPWLDGKHVVFGKVVDGYSVIKDMEKVGSES-GRT  159 (174)
Q Consensus        82 ~~~~~~~~~~~e~~-~~~~~~~G~v~~~~~~~~~~~s~FfItl~~~~~ld~~~~vfG~V~~G~~vl~~I~~~~~~~-~~P  159 (174)
                      +.++++..+++|.. .++|..+|+||||+.+|++++|||||+++++|+||++|+|||+|++|||||++|++++++. ++|
T Consensus        74 g~si~g~~~~dE~~~~l~h~~~G~lsmAn~gp~s~gSQFfI~~~~~~~Ldg~~tvFG~Vv~G~dvv~~I~~~~t~~~~~P  153 (166)
T 2x7k_A           74 GASIYGKQFEDELHPDLKFTGAGILAMANAGPDTNGSQFFVTLAPTQWLDGKHTIFGRVCQGIGMVNRVGMVETNSQDRP  153 (166)
T ss_dssp             CCCTTSSCBCCCCCTTSCCCSTTEEEECBSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHTTSCBCTTSCB
T ss_pred             CCccCCCccccccccccCCCCCeEEEEeeCCCCCccceEEEECCCCCccCCCeeEEEEEEcCHHHHHHHHcCCcCCCCCc
Confidence            88999999999984 7889889999999999999999999999999999999999999999999999999999988 899


Q ss_pred             ccceEEeEeeee
Q 030603          160 SQTVVIEDCGQL  171 (174)
Q Consensus       160 ~~~i~I~~~g~l  171 (174)
                      .++|+|.+|.++
T Consensus       154 ~~~i~I~~~~i~  165 (166)
T 2x7k_A          154 VDDVKIIKAYPS  165 (166)
T ss_dssp             SSCCEEEEEEEC
T ss_pred             CCCeEEEEEEEe
Confidence            999999999986

>2b71_A Cyclophilin-like protein; structural genomics, structural genomics consortium, SGC, isomerase; 2.50A {Plasmodium yoelii} SCOP: b.62.1.1

Probab=100.00  E-value=1.4e-48  Score=298.87  Aligned_cols=155  Identities=43%  Similarity=0.715  Sum_probs=142.5

Q ss_pred             CCeEEEEEEECCEeceEEEEEEcCCCChHHHHHHHHHhcCCCCCCCCCccccccCCEEEEeecCceEeeCCCCCCCCCCC
Q 030603            3 NPRVFFDILIGKMNKGRVVMELFADVTPKTAENFRALCTGEKGIGMSGKPLHYKGSTFHRIIPNFMCQGGDFTRGNGTGG   82 (174)
Q Consensus         3 ~p~v~~di~~~~t~~G~i~i~L~~~~aP~~~~nF~~l~~~~~~~~~~g~~~~y~g~~f~ri~~~~~iq~G~~~~~~~~~~   82 (174)
                      +++|.|+     |+.|+|+|+||++.||++|+||++||+       .|   ||+|+.|||++|+|||||||+. +++.++
T Consensus        38 ~~~V~l~-----T~~G~I~ieL~~~~aP~tv~NF~~L~~-------~g---~Y~g~~FhRVi~~f~iQgGd~~-~~g~gg  101 (196)
T 2b71_A           38 RGYITIY-----TNLGDFEVELYWYHSPKTCLNFYTLCE-------MG---FYDNTIFHRVIPNFVIQGGDPT-GTGKGG  101 (196)
T ss_dssp             SCEEEEE-----ETTEEEEEEECTTTSHHHHHHHHHHHH-------TT---TTTTEEEEEEETTTEEEEEETT-SSSSCC
T ss_pred             CcEEEEE-----eCCCCEEEEEeCCCCcHHHHHHHHHhh-------cC---CcCCCEEEEEeCCcEEEcCCCC-CCCCCC
Confidence            5788887     899999999999999999999999995       33   4999999999999999999986 677888


Q ss_pred             CcccCCccCCCc-cCCCCCCCeEEEeeecCCCCCcceEEEEccCCCCCCCCceEEEEEEcChHHHHHHHhCCCCC-CCcc
Q 030603           83 ESIYGMKFADEN-FKMKHTGPGILSMANAGPNTNGSQFFICTQKTPWLDGKHVVFGKVVDGYSVIKDMEKVGSES-GRTS  160 (174)
Q Consensus        83 ~~~~~~~~~~e~-~~~~~~~~G~v~~~~~~~~~~~s~FfItl~~~~~ld~~~~vfG~V~~G~~vl~~I~~~~~~~-~~P~  160 (174)
                      .++++.++++|. ..++|..+|+||||+.+|++++|||||+++++|+||++|+|||+|++||+||++|++++++. ++|.
T Consensus       102 ~si~g~~~~dE~~~~l~h~~~G~lsMAn~gpns~gSQFFIt~~~~~~LDg~~tVFG~Vv~Gmdvv~~I~~~~t~~~~~P~  181 (196)
T 2b71_A          102 KSIYGEYFEDEINKELKHTGAGILSMSNNGPNTNSSQFFITLAPLPHLDGKHTIFARVSKNMTCIENIASVQTTATNKPI  181 (196)
T ss_dssp             CBTTBSCBCCCCCTTCCCCSTTEEEECCSSTTCBSSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTSCBCTTCCBS
T ss_pred             CccCCCcccccccCCcCcCCCeEEEEccCCCCCcccEEEEECCCCCccCCCEeEEEEEecCHHHHHHHHhCCcCCCCCCC
Confidence            899999999995 57889899999999999999999999999999999999999999999999999999999987 9999


Q ss_pred             cceEEeEeeeecc
Q 030603          161 QTVVIEDCGQLAE  173 (174)
Q Consensus       161 ~~i~I~~~g~l~~  173 (174)
                      ++|+|.+|++++|
T Consensus       182 ~~i~I~~~~i~~d  194 (196)
T 2b71_A          182 FDLKILRTSTAVN  194 (196)
T ss_dssp             SCCEEEEEEC---
T ss_pred             CCeEEEEEEEecC
Confidence            9999999999875

>2fu0_A Cyclophilin, putative; PFE0505W, cyclosporin-binding domain, structura genomics, structural genomics consortium, SGC, unknown FUNC; 1.80A {Plasmodium falciparum} SCOP: b.62.1.1

Probab=100.00  E-value=1.9e-48  Score=290.22  Aligned_cols=154  Identities=43%  Similarity=0.717  Sum_probs=141.7

Q ss_pred             CCeEEEEEEECCEeceEEEEEEcCCCChHHHHHHHHHhcCCCCCCCCCccccccCCEEEEeecCceEeeCCCCCCCCCCC
Q 030603            3 NPRVFFDILIGKMNKGRVVMELFADVTPKTAENFRALCTGEKGIGMSGKPLHYKGSTFHRIIPNFMCQGGDFTRGNGTGG   82 (174)
Q Consensus         3 ~p~v~~di~~~~t~~G~i~i~L~~~~aP~~~~nF~~l~~~~~~~~~~g~~~~y~g~~f~ri~~~~~iq~G~~~~~~~~~~   82 (174)
                      .++|-++     |+.|+|+||||++.||++|+||++||+       .|   ||+|+.|||++|+|||||||+. +++.++
T Consensus         5 ~~~v~~~-----T~~G~i~ieL~~~~aP~t~~NF~~L~~-------~g---~Y~g~~fhRvi~~f~iQgGd~~-~~g~gg   68 (160)
T 2fu0_A            5 PKSAIIY-----TTMGDIHISLFYKECKKTVQNFSVHSI-------NG---YYNNCIFHRVIKHFMVQTGDPS-GDGTGG   68 (160)
T ss_dssp             CCEEEEE-----ETTEEEEEEECTTTCHHHHHHHHHHHH-------TT---TTTTCBCCEEETTTEEEECCTT-SSSSCC
T ss_pred             CCEEEEE-----ecCccEEEEEeCCCChHHHHHHHHHhc-------cC---ccCCCEEEEEECCCEEEeCCcC-CCCCCC
Confidence            4555555     999999999999999999999999995       33   4999999999999999999985 677888


Q ss_pred             CcccCCccCCCcc-CCCCCCCeEEEeeecCCCCCcceEEEEccCCCCCCCCceEEEEEEcChHHHHHHHhCCCCC-CCcc
Q 030603           83 ESIYGMKFADENF-KMKHTGPGILSMANAGPNTNGSQFFICTQKTPWLDGKHVVFGKVVDGYSVIKDMEKVGSES-GRTS  160 (174)
Q Consensus        83 ~~~~~~~~~~e~~-~~~~~~~G~v~~~~~~~~~~~s~FfItl~~~~~ld~~~~vfG~V~~G~~vl~~I~~~~~~~-~~P~  160 (174)
                      +++++.++++|.. .++|.++|+||||+.+|++++|||||++.++|+||++|+|||+|++|||||++|++++++. ++|.
T Consensus        69 ~si~g~~~~dE~~~~l~h~~~G~lsmA~~gp~s~~SQFfI~~~~~~~Ldg~~tvFG~Vv~G~dvv~~I~~~~t~~~~~P~  148 (160)
T 2fu0_A           69 ESIWGNEFEDEFFDHLNHSKPFMVSMANCGPNTNGSQFFITTVPCPWLDFKHTVFGKVTQGSKIVLDIEKVRTDKRDKPL  148 (160)
T ss_dssp             CCTTSSCBCCCCBTTBCSSSSSEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTSCBCTTSCBS
T ss_pred             CcccCCCccccccCCcccCCceEEEEecCCCCCcccEEEEECCCCCccCCCcEEEEEEEcCHHHHHHHHhCCcCCCCCcC
Confidence            8899999999987 6889999999999999999999999999999999999999999999999999999999986 9999


Q ss_pred             cceEEeEeeeec
Q 030603          161 QTVVIEDCGQLA  172 (174)
Q Consensus       161 ~~i~I~~~g~l~  172 (174)
                      ++|+|.+|.+++
T Consensus       149 ~~v~I~~~~v~~  160 (160)
T 2fu0_A          149 EDIKILNIKINN  160 (160)
T ss_dssp             SCCBEEEEEEC-
T ss_pred             CCeEEEEEEEeC
Confidence            999999999864

>1w74_A Peptidyl-prolyl CIS-trans isomerase A; cyclophilin, ppiase, RV0009, rotamase, structural proteomics in europe, spine; 2.6A {Mycobacterium tuberculosis} SCOP: b.62.1.1

Probab=100.00  E-value=2.8e-48  Score=296.35  Aligned_cols=162  Identities=41%  Similarity=0.714  Sum_probs=143.3

Q ss_pred             CCCCeEEEEEEECCEeceEEEEEEcCCCChHHHHHHHHHhcCCCCCCC--CC---ccccccCCEEEEeecCceEeeCCCC
Q 030603            1 MTNPRVFFDILIGKMNKGRVVMELFADVTPKTAENFRALCTGEKGIGM--SG---KPLHYKGSTFHRIIPNFMCQGGDFT   75 (174)
Q Consensus         1 ~~~p~v~~di~~~~t~~G~i~i~L~~~~aP~~~~nF~~l~~~~~~~~~--~g---~~~~y~g~~f~ri~~~~~iq~G~~~   75 (174)
                      |.+++|.|+     |+.|+|+|+||++.||++|+||++||+|.++.+.  .|   ...||+|+.||||+|+|||||||+.
T Consensus        21 ~~~~~v~l~-----t~~G~I~ieL~~~~aP~tv~NF~~L~tG~~~~~~~~~g~~~~~~~Y~g~~FhRVi~~fmiQgGd~~   95 (191)
T 1w74_A           21 LATATATLH-----TNRGDIKIALFGNHAPKTVANFVGLAQGTKDYSTQNASGGPSGPFYDGAVFHRVIQGFMIQGGDPT   95 (191)
T ss_dssp             CCSEEEEEE-----ETTEEEEEEECTTTSHHHHHHHHHHHHTCSCCSSCCTTBSSSSCSSTTEEEEEEETTTEEEECCTT
T ss_pred             CCCeEEEEE-----ecceeEEEEEcCCCChHHHHHHHHHhcCCcccccccccccccCCccCCCEEEEEeCCCEEecCCCC
Confidence            346677776     9999999999999999999999999998876421  11   2346999999999999999999975


Q ss_pred             CCCCCCCCcccCCccCCCc-cCCCCCCCeEEEeeecCCCCCcceEEEEccCCCCCCCCceEEEEEEc--ChHHHHHHHhC
Q 030603           76 RGNGTGGESIYGMKFADEN-FKMKHTGPGILSMANAGPNTNGSQFFICTQKTPWLDGKHVVFGKVVD--GYSVIKDMEKV  152 (174)
Q Consensus        76 ~~~~~~~~~~~~~~~~~e~-~~~~~~~~G~v~~~~~~~~~~~s~FfItl~~~~~ld~~~~vfG~V~~--G~~vl~~I~~~  152 (174)
                       +++.++   ++.++++|. ..++|..+|+||||+.+|++++|||||++.++|+||++|+|||+|++  ||+||++|+++
T Consensus        96 -g~G~gg---~g~~f~dE~~~~l~h~~~G~lsMAn~gpntngSQFFIt~~~~~~LDg~~tVFG~Vv~~~Gmdvv~~I~~~  171 (191)
T 1w74_A           96 -GTGRGG---PGYKFADEFHPELQFDKPYLLAMANAGPGTNGSQFFITVGKTPHLNRRHTIFGEVIDAESQRVVEAISKT  171 (191)
T ss_dssp             -SSSSCC---SSCCBCCCCCTTCCSCSSSEEEECCSSTTCBSSCEEEESSCCGGGTTTSCEEEEECSHHHHHHHHHHHTS
T ss_pred             -CCCCCC---CCCccccccccCCCcCCCcEEEEeeCCCCCccceEEEEcCCCcccCCCeeEEEEEEECCCHHHHHHHHcC
Confidence             555555   477899994 68899999999999999999999999999999999999999999999  99999999999


Q ss_pred             CCCC-CCcccceEEeEeeee
Q 030603          153 GSES-GRTSQTVVIEDCGQL  171 (174)
Q Consensus       153 ~~~~-~~P~~~i~I~~~g~l  171 (174)
                      +++. ++|.++|+|.+|+++
T Consensus       172 ~t~~~~~P~~~v~I~~~~i~  191 (191)
T 1w74_A          172 ATDGNDRPTDPVVIESITIS  191 (191)
T ss_dssp             CBCTTSCBSSCCEEEEEEEC
T ss_pred             CcCCCCCcCCCeEEEEEEEC
Confidence            9987 999999999999985

>2poe_A Cyclophilin-like protein, putative; cryptosporidium parvum cyclophilin isomerase, structural genomics; 2.01A {Cryptosporidium parvum iowa II} PDB: 2qer_A

Probab=100.00  E-value=2.6e-48  Score=295.46  Aligned_cols=148  Identities=45%  Similarity=0.748  Sum_probs=139.6

Q ss_pred             EeceEEEEEEcCCCChHHHHHHHHHhcCCCCCCCCCccccccCCEEEEeecCceEeeCCCCCCCCCCCCcccCCccCCCc
Q 030603           15 MNKGRVVMELFADVTPKTAENFRALCTGEKGIGMSGKPLHYKGSTFHRIIPNFMCQGGDFTRGNGTGGESIYGMKFADEN   94 (174)
Q Consensus        15 t~~G~i~i~L~~~~aP~~~~nF~~l~~~~~~~~~~g~~~~y~g~~f~ri~~~~~iq~G~~~~~~~~~~~~~~~~~~~~e~   94 (174)
                      |+.|+|+||||++.||++|+||++||+.       |   ||+|+.||||+|+||||||++. +++.++.++++.++++|.
T Consensus        23 t~~G~i~ieL~~~~aP~t~~NF~~L~~~-------g---~Y~g~~FhRvi~~f~iQgGd~~-~~g~gg~si~g~~~~dE~   91 (185)
T 2poe_A           23 TNYGDLKFELFCSQCPKACKNFLALSAS-------G---YYKNTIFHKNIKGFIIQGGDPT-GTGKGGESIYGRYFDDEI   91 (185)
T ss_dssp             ETTEEEEEEECTTTCHHHHHHHHHHHHT-------T---TTTTEEEEEECTTSEEEEEETT-SSSSCCCBTTBSCBCCCC
T ss_pred             ecCccEEEEEeCCCCcHHHHHHHHHhcc-------C---CCCCCEEEEEECCCEEEcCCCC-CCCCCCCccCCCcccccc
Confidence            8999999999999999999999999953       3   4999999999999999999987 677888889999999998


Q ss_pred             -cCCCCCCCeEEEeeecC----CCCCcceEEEEccCCCCCCCCceEEEEEEcChHHHHHHHhCCCCC-CCcccceEEeEe
Q 030603           95 -FKMKHTGPGILSMANAG----PNTNGSQFFICTQKTPWLDGKHVVFGKVVDGYSVIKDMEKVGSES-GRTSQTVVIEDC  168 (174)
Q Consensus        95 -~~~~~~~~G~v~~~~~~----~~~~~s~FfItl~~~~~ld~~~~vfG~V~~G~~vl~~I~~~~~~~-~~P~~~i~I~~~  168 (174)
                       ..++|..+|+||||+.+    |++++|||||+++++|+||++|+|||+|++||+||++|++++++. ++|.++|+|.+|
T Consensus        92 ~~~l~h~~~G~lsmA~~g~~~~p~s~gSQFFIt~~~~~~LDg~~tVFG~Vv~Gmdvv~~I~~~~t~~~~~P~~~v~I~~~  171 (185)
T 2poe_A           92 YPELKYDRRGILSMASKGASKKPNTNGSQFFITYSSLPQLNGEYVIFGKLIDGFETLNTLENCPSDKSHKPIDEIIIKDI  171 (185)
T ss_dssp             CTTSCCCSTTEEEECCSCC-CCCSCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHHSCBCTTSCBSSCCEEEEE
T ss_pred             cCCCccCCCeEEEEecCCCCCCCCCccceEEEECCCCCccCCCeeEEEEEeCCHHHHHHHHhCCcCCCCCcCCCeEEEEE
Confidence             68889899999999998    999999999999999999999999999999999999999999987 999999999999


Q ss_pred             eeecc
Q 030603          169 GQLAE  173 (174)
Q Consensus       169 g~l~~  173 (174)
                      +++.|
T Consensus       172 ~i~~d  176 (185)
T 2poe_A          172 VIHSN  176 (185)
T ss_dssp             EEECC
T ss_pred             EEECC
Confidence            99975

>1zkc_A Peptidyl-prolyl CIS-trans isomerase like 2; CIS-trans isomerization, peptidylprolyl isomerase, protein- folding, structural genomics consortium; 1.65A {Homo sapiens} SCOP: b.62.1.1

Probab=100.00  E-value=6.6e-48  Score=295.20  Aligned_cols=148  Identities=50%  Similarity=0.842  Sum_probs=139.5

Q ss_pred             EeceEEEEEEcCCCChHHHHHHHHHhcCCCCCCCCCccccccCCEEEEeecCceEeeCCCCCCCCCCCCcccCCccCCCc
Q 030603           15 MNKGRVVMELFADVTPKTAENFRALCTGEKGIGMSGKPLHYKGSTFHRIIPNFMCQGGDFTRGNGTGGESIYGMKFADEN   94 (174)
Q Consensus        15 t~~G~i~i~L~~~~aP~~~~nF~~l~~~~~~~~~~g~~~~y~g~~f~ri~~~~~iq~G~~~~~~~~~~~~~~~~~~~~e~   94 (174)
                      |+.|+|+|+||++.||++|+||++||+       .|   ||+|+.||||+|+|||||||+. +++.++.++++.++++|.
T Consensus        26 T~~G~I~ieL~~~~aP~tv~NF~~L~~-------~g---~Ydg~~FhRVi~~f~iQgGd~~-~~g~Gg~si~g~~f~dE~   94 (197)
T 1zkc_A           26 TNKGDLNLELHCDLTPKTCENFIRLCK-------KH---YYDGTIFHRSIRNFVIQGGDPT-GTGTGGESYWGKPFKDEF   94 (197)
T ss_dssp             ETTEEEEEEECTTTSHHHHHHHHHHHH-------TT---TTTTEEEEEEETTTEEEECCTT-SSSSCCCBTTBSCBCCCC
T ss_pred             eCCccEEEEEcCCCCcHHHHHHHHHHh-------cC---CCCCCEEEEEeCCCEEEcCCCC-CCCCCCCccCCCcccccc
Confidence            899999999999999999999999994       33   4999999999999999999986 677888899999999995


Q ss_pred             -cCCCCCCCeEEEeeecCCCCCcceEEEEccCCCCCCCCceEEEEEEcChHHHHHHHhCCCCC--CCcccceEEeEeeee
Q 030603           95 -FKMKHTGPGILSMANAGPNTNGSQFFICTQKTPWLDGKHVVFGKVVDGYSVIKDMEKVGSES--GRTSQTVVIEDCGQL  171 (174)
Q Consensus        95 -~~~~~~~~G~v~~~~~~~~~~~s~FfItl~~~~~ld~~~~vfG~V~~G~~vl~~I~~~~~~~--~~P~~~i~I~~~g~l  171 (174)
                       ..++|..+|+||||+.++++++|||||++.++|+||++|+|||+|++||+||++|++++++.  ++|.++|+|.+|+++
T Consensus        95 ~~~l~h~~~G~lsMAn~gp~sngSQFFIt~~~~~~LDg~~tVFG~Vv~Gmdvv~~I~~~~t~~~~~~P~~~i~I~~~~v~  174 (197)
T 1zkc_A           95 RPNLSHTGRGILSMANSGPNSNRSQFFITFRSCAYLDKKHTIFGRVVGGFDVLTAMENVESDPKTDRPKEEIRIDATTVF  174 (197)
T ss_dssp             CTTCCSCSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHHSCBCTTTCCBSSCCEEEEEEEE
T ss_pred             CcCcCCCCceEEEEecCCCCCcccEEEEEcCCCCccCCCccEEEEEEcCHHHHHHHHcCCCCCCCCCcCCCeEEEEEEEE
Confidence             68899999999999999999999999999999999999999999999999999999999987  899999999999999


Q ss_pred             cc
Q 030603          172 AE  173 (174)
Q Consensus       172 ~~  173 (174)
                      .|
T Consensus       175 ~d  176 (197)
T 1zkc_A          175 VD  176 (197)
T ss_dssp             EC
T ss_pred             cC
Confidence            76

>2ok3_A Peptidyl-prolyl CIS-trans isomerase-like 3; beta-barrel, helix, disulfide bridge; 2.00A {Homo sapiens} SCOP: b.62.1.1 PDB: 1xyh_A 2oju_A*

Probab=100.00  E-value=5.1e-48  Score=288.36  Aligned_cols=148  Identities=49%  Similarity=0.770  Sum_probs=139.3

Q ss_pred             EeceEEEEEEcCCCChHHHHHHHHHhcCCCCCCCCCccccccCCEEEEeecCceEeeCCCCCCCCCCCCcccCCccCCCc
Q 030603           15 MNKGRVVMELFADVTPKTAENFRALCTGEKGIGMSGKPLHYKGSTFHRIIPNFMCQGGDFTRGNGTGGESIYGMKFADEN   94 (174)
Q Consensus        15 t~~G~i~i~L~~~~aP~~~~nF~~l~~~~~~~~~~g~~~~y~g~~f~ri~~~~~iq~G~~~~~~~~~~~~~~~~~~~~e~   94 (174)
                      |+.|+|+|+||++.||++|+||++||+.       |   ||+|+.|||++|+|++|||++. +++.++.++++.++++|.
T Consensus         7 T~~G~i~ieL~~~~aP~t~~NF~~L~~~-------g---~Y~g~~fhRvi~~f~iQgGd~~-~~g~gg~si~g~~~~dE~   75 (161)
T 2ok3_A            7 TDVGDIKIEVFCERTPKTCENFLALCAS-------N---YYNGCIFHRNIKGFMVQTGDPT-GTGRGGNSIWGKKFEDEY   75 (161)
T ss_dssp             ETTEEEEEEECTTTCHHHHHHHHHHHHT-------T---TTTTCBCCEEETTTEEEECCTT-SSSSCCCCTTSSCBCCCC
T ss_pred             eCCccEEEEEcCCCCcHHHHHHHHHhhh-------c---ccCCCEEEEEECCCEEecCCCC-CCCCCCCcccCCcccccc
Confidence            8999999999999999999999999953       3   4999999999999999999987 677888899999999997


Q ss_pred             c-CCCCCCCeEEEeeecCCCCCcceEEEEccCCCCCCCCceEEEEEEcChHHHHHHHhCCCCC--CCcccceEEeEeeee
Q 030603           95 F-KMKHTGPGILSMANAGPNTNGSQFFICTQKTPWLDGKHVVFGKVVDGYSVIKDMEKVGSES--GRTSQTVVIEDCGQL  171 (174)
Q Consensus        95 ~-~~~~~~~G~v~~~~~~~~~~~s~FfItl~~~~~ld~~~~vfG~V~~G~~vl~~I~~~~~~~--~~P~~~i~I~~~g~l  171 (174)
                      . .++|+.+|+||||+.++++++|||||+++++|+||++|+|||+|++||+||++|++++++.  ++|.++|+|.+|.++
T Consensus        76 ~~~l~h~~~G~lsma~~gp~s~~SQFfI~~~~~~~Ldg~~tvFG~Vv~G~dvv~~I~~~~~~~~~~~P~~~v~I~~~~i~  155 (161)
T 2ok3_A           76 SEYLKHNVRGVVSMANNGPNTNGSQFFITYGKQPHLDMKYTVFGKVIDGLETLDELEKLPVNEKTYRPLNDVHIKDITIH  155 (161)
T ss_dssp             CTTCCSCSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTCCBCTTTCCBSSCCBEEEEEEE
T ss_pred             CcCcCcCCCeEEEEecCCCCCcceEEEEEcCCCCccCCCEeEEEEEeCCHHHHHHHHhCCccCCCCCcCCCeEEEEEEEe
Confidence            5 7889899999999999999999999999999999999999999999999999999999887  799999999999999


Q ss_pred             cc
Q 030603          172 AE  173 (174)
Q Consensus       172 ~~  173 (174)
                      +|
T Consensus       156 ~~  157 (161)
T 2ok3_A          156 AN  157 (161)
T ss_dssp             CC
T ss_pred             cC
Confidence            76

>2k7n_A Peptidyl-prolyl CIS-trans isomerase-like 1; beta barrel, disorder-order transition, HOOK-like, mRNA processing, mRNA splicing, rotamase; NMR {Homo sapiens}

Probab=100.00  E-value=2.7e-48  Score=298.41  Aligned_cols=156  Identities=47%  Similarity=0.824  Sum_probs=145.6

Q ss_pred             CCCeEEEEEEECCEeceEEEEEEcCCCChHHHHHHHHHhcCCCCCCCCCccccccCCEEEEeecCceEeeCCCCCCCCCC
Q 030603            2 TNPRVFFDILIGKMNKGRVVMELFADVTPKTAENFRALCTGEKGIGMSGKPLHYKGSTFHRIIPNFMCQGGDFTRGNGTG   81 (174)
Q Consensus         2 ~~p~v~~di~~~~t~~G~i~i~L~~~~aP~~~~nF~~l~~~~~~~~~~g~~~~y~g~~f~ri~~~~~iq~G~~~~~~~~~   81 (174)
                      .+++|.|+     |++|+|+||||++.||++|+||++||+       .|   ||+++.||||+|+||||+||+. +++.+
T Consensus        10 ~~~~V~l~-----T~~G~I~ieL~~d~aP~tv~NF~~L~~-------~g---~Ydg~~FhRVi~~F~iQgGd~~-~~g~g   73 (203)
T 2k7n_A           10 QPPNVYLE-----TSMGIIVLELYWKHAPKTCKNFAELAR-------RG---YYNGTKFHRIIKDFMIQGGDPT-GTGRG   73 (203)
T ss_dssp             CCSEEEEE-----ESSCEEEEEECTTTCTTHHHHHHHHHH-------HT---CGGGCEEEEEETTTEEEEECSS-SSSSC
T ss_pred             CCCEEEEE-----eCCCcEEEEEccCCCcHHHHHHHHHHh-------cC---ccCCCEEEEEeCCcEEEcCCCC-CCCCC
Confidence            47889988     899999999999999999999999995       33   4999999999999999999986 67778


Q ss_pred             CCcccCCccCCCcc-CCCCCCCeEEEeeecCCCCCcceEEEEccCCCCCCCCceEEEEEEcChHHHHHHHhCCCCC-CCc
Q 030603           82 GESIYGMKFADENF-KMKHTGPGILSMANAGPNTNGSQFFICTQKTPWLDGKHVVFGKVVDGYSVIKDMEKVGSES-GRT  159 (174)
Q Consensus        82 ~~~~~~~~~~~e~~-~~~~~~~G~v~~~~~~~~~~~s~FfItl~~~~~ld~~~~vfG~V~~G~~vl~~I~~~~~~~-~~P  159 (174)
                      +.++++..+++|.. .++|..+|+||||+.++++++|||||++.++|+||++|+|||+|++|||||++|++++++. ++|
T Consensus        74 g~si~g~~f~dE~~~~l~h~~~G~lsMAn~gpnsngSQFFIt~~~~~~LDg~~tVFG~VveGmdvv~kI~~~~t~~~~~P  153 (203)
T 2k7n_A           74 GASIYGKQFEDELHPDLKFTGAGILAMANAGPDTNGSQFFVTLAPTQWLDGKHTIFGRVCQGIGMVNRVGMVETNSQDRP  153 (203)
T ss_dssp             CCTTSCSCBCCCCCCSSCCCSSCEEEEEESSTTCEEEEEEEESSCCCSSTTTSCEEEEEESCHHHHHHHHSCCEEETTEE
T ss_pred             CCccCCCcccccccccccCCCCeEEEEeeCCCCCcccEEEEEcCCCCccCCCeeEEEEEEcCHHHHHHHHcCCcCCCCCc
Confidence            88899999999984 8889889999999999999999999999999999999999999999999999999999987 899


Q ss_pred             ccceEEeEeeeecc
Q 030603          160 SQTVVIEDCGQLAE  173 (174)
Q Consensus       160 ~~~i~I~~~g~l~~  173 (174)
                      .++|+|.+|+++++
T Consensus       154 ~~~V~I~~~~v~~~  167 (203)
T 2k7n_A          154 VDDVKIIKAYPSGG  167 (203)
T ss_dssp             CCCCBEEEEEECCC
T ss_pred             CCCeEEEEEEEEec
Confidence            99999999999875

>3bo7_A Peptidyl-prolyl CIS-trans isomerase cyclophilin-T; isomerase-immunosuppressant complex, immunosuppressant, cyclophilin, structural G structural genomics consortium, SGC; HET: BMT; 2.35A {Toxoplasma gondii}

Probab=100.00  E-value=1.3e-47  Score=295.27  Aligned_cols=148  Identities=34%  Similarity=0.589  Sum_probs=133.3

Q ss_pred             EeceEEEEEEcCCCChHHHHHHHHHhcCCCCCCCCCccccccCCEEEEeecCceEeeC-----CCCCCCCCCCCccc---
Q 030603           15 MNKGRVVMELFADVTPKTAENFRALCTGEKGIGMSGKPLHYKGSTFHRIIPNFMCQGG-----DFTRGNGTGGESIY---   86 (174)
Q Consensus        15 t~~G~i~i~L~~~~aP~~~~nF~~l~~~~~~~~~~g~~~~y~g~~f~ri~~~~~iq~G-----~~~~~~~~~~~~~~---   86 (174)
                      |+.|+|+|+||++.||++|+||++||+       .|   ||+|+.||||+|+||||||     |+. +++.++.+++   
T Consensus        13 T~~G~i~ieL~~~~aP~t~~NF~~L~~-------~g---~Ydg~~FhRvi~~f~iQgG~~~~~Dp~-~~g~gg~si~~~~   81 (201)
T 3bo7_A           13 TTQGSLNIELHADMAPRACDSFLRLCA-------VK---YFDDTIFHRCIRNFMIQGGRAELRQPS-KKKEVQQSPRSIS   81 (201)
T ss_dssp             ETTEEEEEEECTTTCHHHHHHHHHHHH-------TT---TTTTCBEEEEETTTEEEECCGGGCCC--------CCSSCCC
T ss_pred             eCCCCEEEEEcCCCCcHHHHHHHHHHh-------cC---ccCCCEEEEeeCCCEEEcCcccccCCC-CCCCCCccccccc
Confidence            899999999999999999999999995       33   4999999999999999999     876 6677888888   


Q ss_pred             ----CCccCCCc-cCCCCCCCeEEEeeecCCCCCcceEEEEccCCCCCCCCceEEEEEEcChHHHHHHHhCCCCC-CCcc
Q 030603           87 ----GMKFADEN-FKMKHTGPGILSMANAGPNTNGSQFFICTQKTPWLDGKHVVFGKVVDGYSVIKDMEKVGSES-GRTS  160 (174)
Q Consensus        87 ----~~~~~~e~-~~~~~~~~G~v~~~~~~~~~~~s~FfItl~~~~~ld~~~~vfG~V~~G~~vl~~I~~~~~~~-~~P~  160 (174)
                          +.++++|. ..+.|..+|+||||+.++++++|||||++.++|+||++|+|||+|++||+||++|++++++. ++|.
T Consensus        82 ~~~~g~~f~dE~~~~l~h~~~G~lsmA~~gp~s~gSQFFIt~~~~~~LDg~~tVFG~Vv~Gmdvv~~I~~~~t~~~~~P~  161 (201)
T 3bo7_A           82 GFPGGAPFEDEFDNRLVHQGIGVLSMANDGKHSNLSEFFITFKSCEHLNNKHTIFGRVVGGLDVLRQWEKLETDKKDKPL  161 (201)
T ss_dssp             SSTTCCCBCCCCCTTCCCCSTTEEEECCSSTTCBSSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHTTCCBCTTSCBS
T ss_pred             cccCCCcccCcccCCCCcCCCcEEEEeeCCCCCcccEEEEECCCCcccCCCceEEEEEecCHHHHHHHHhCCcCCCCCcC
Confidence                78899995 67889899999999999999999999999999999999999999999999999999999988 9999


Q ss_pred             cceEEeEeeeecc
Q 030603          161 QTVVIEDCGQLAE  173 (174)
Q Consensus       161 ~~i~I~~~g~l~~  173 (174)
                      ++|+|.+|++|.|
T Consensus       162 ~~i~I~~~~v~~d  174 (201)
T 3bo7_A          162 KPPKVEEIIVFKN  174 (201)
T ss_dssp             SCCBEEEEEEEEC
T ss_pred             CCeEEEEEEEEcC
Confidence            9999999999976

>2a2n_A Peptidylprolyl isomerase domain and WD repeat CON; CIS-trans isomerization, protein-folding, peptidylprolyl ISO structural genomics; 1.65A {Homo sapiens} SCOP: b.62.1.1

Probab=100.00  E-value=1.1e-47  Score=289.88  Aligned_cols=157  Identities=46%  Similarity=0.723  Sum_probs=141.9

Q ss_pred             CCeEEEEEEECCEeceEEEEEEcCCCChHHHHHHHHHhcCCCCCCCCCccccccCCEEEEeecCceEeeCCCCCCCCCCC
Q 030603            3 NPRVFFDILIGKMNKGRVVMELFADVTPKTAENFRALCTGEKGIGMSGKPLHYKGSTFHRIIPNFMCQGGDFTRGNGTGG   82 (174)
Q Consensus         3 ~p~v~~di~~~~t~~G~i~i~L~~~~aP~~~~nF~~l~~~~~~~~~~g~~~~y~g~~f~ri~~~~~iq~G~~~~~~~~~~   82 (174)
                      +|+...+..+.+|+.|+|+|+||++.||++|+||++||+       .|   ||+|+.|||++|+|||||||+. +++.++
T Consensus        16 ~~~~~~~~v~~~t~~G~i~ieL~~~~aP~t~~NF~~L~~-------~g---~Y~g~~FhRvi~~f~iQgGd~~-~~g~gg   84 (176)
T 2a2n_A           16 GPKRVSDSAIIHTSMGDIHTKLFPVECPKTVENFCVHSR-------NG---YYNGHTFHRIIKGFMIQTGDPT-GTGMGG   84 (176)
T ss_dssp             SCCCCCSEEEEEETTEEEEEEECTTTCHHHHHHHHHHHH-------TT---TTTTCBCCEEETTTEEEECCTT-SSSSCC
T ss_pred             CCCCCCCEEEEEecCccEEEEEeCCCChHHHHHHHHHhh-------cC---ccCCCEEEEEECCcEEEccCCC-CCCCCC
Confidence            344434444555999999999999999999999999995       33   4999999999999999999985 677888


Q ss_pred             CcccCCccCCCcc-CCCCCCCeEEEeeecCCCCCcceEEEEccCCCCCCCCceEEEEEEcChHHHHHHHhCCCC--CCCc
Q 030603           83 ESIYGMKFADENF-KMKHTGPGILSMANAGPNTNGSQFFICTQKTPWLDGKHVVFGKVVDGYSVIKDMEKVGSE--SGRT  159 (174)
Q Consensus        83 ~~~~~~~~~~e~~-~~~~~~~G~v~~~~~~~~~~~s~FfItl~~~~~ld~~~~vfG~V~~G~~vl~~I~~~~~~--~~~P  159 (174)
                      .++++.++++|.. .++|.++|+||||+.++++++|||||++.++|+||++|+|||+|++|||||++|++++++  .++|
T Consensus        85 ~si~g~~~~dE~~~~l~h~~~G~lsmA~~gp~s~gSQFFIt~~~~~~LDg~~tVFG~Vv~Gmdvv~~I~~~~t~~~~~~P  164 (176)
T 2a2n_A           85 ESIWGGEFEDEFHSTLRHDRPYTLSMANAGSNTNGSQFFITVVPTPWLDNKHTVFGRVTKGMEVVQRISNVKVNPKTDKP  164 (176)
T ss_dssp             CCTTSSCBCCCCCTTCCSCSSSEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTSCBCTTTCCB
T ss_pred             CcccCCccccccccccccCCceEEEEEeCCCCCcccEEEEECCCCCccCCCeeEEEEEeCCHHHHHHHHcCCccCCCCcc
Confidence            8999999999987 689999999999999999999999999999999999999999999999999999999998  4999


Q ss_pred             ccceEEeEeee
Q 030603          160 SQTVVIEDCGQ  170 (174)
Q Consensus       160 ~~~i~I~~~g~  170 (174)
                      .++|+|.+|.+
T Consensus       165 ~~~v~I~~v~v  175 (176)
T 2a2n_A          165 YEDVSIINITV  175 (176)
T ss_dssp             SSCCBEEEEEE
T ss_pred             CCCeEEEEEEE
Confidence            99999999976

>1v9t_A Cyclophilin B; beta barrel, isomerase-isomerase inhibitor complex; HET: NIT; 1.70A {Escherichia coli} SCOP: b.62.1.1 PDB: 1j2a_A* 1vai_A* 1clh_A

Probab=100.00  E-value=7.9e-47  Score=283.27  Aligned_cols=153  Identities=32%  Similarity=0.509  Sum_probs=136.3

Q ss_pred             CCCeEEEEEEECCEeceEEEEEEcCCCChHHHHHHHHHhcCCCCCCCCCccccccCCEEEEeecCceEeeCCCCCCCCCC
Q 030603            2 TNPRVFFDILIGKMNKGRVVMELFADVTPKTAENFRALCTGEKGIGMSGKPLHYKGSTFHRIIPNFMCQGGDFTRGNGTG   81 (174)
Q Consensus         2 ~~p~v~~di~~~~t~~G~i~i~L~~~~aP~~~~nF~~l~~~~~~~~~~g~~~~y~g~~f~ri~~~~~iq~G~~~~~~~~~   81 (174)
                      .||+|+|+     |+.|+|+|+||++.||++|+||++||+       .|   ||+|+.||||+|+|||||||+....+  
T Consensus         3 ~~~~v~~~-----t~~G~i~ieL~~~~aP~t~~NF~~L~~-------~g---~Y~g~~FhRvi~~f~iQgGd~~~~~~--   65 (166)
T 1v9t_A            3 GDPHVLLT-----TSAGNIELELDKQKAPVSVQNFVDYVN-------SG---FYNNTTFHRVIPGFMIQGGGFTEQMQ--   65 (166)
T ss_dssp             CSCEEEEE-----ETTEEEEEEECTTTCHHHHHHHHHHHH-------TT---TTTTCBEEEEETTTEEEESSBCTTCC--
T ss_pred             CCeEEEEE-----eCCccEEEEEcCCCCcHHHHHHHHHhc-------cC---CCCCCEEEEEECCcEEEcCCcCcCCC--
Confidence            48999998     999999999999999999999999994       34   49999999999999999999874332  


Q ss_pred             CCcccCCccCCCccCCCCCCCeEEEeeec-CCCCCcceEEEEccCCCCCCCC-----ceEEEEEEcChHHHHHHHhCCCC
Q 030603           82 GESIYGMKFADENFKMKHTGPGILSMANA-GPNTNGSQFFICTQKTPWLDGK-----HVVFGKVVDGYSVIKDMEKVGSE  155 (174)
Q Consensus        82 ~~~~~~~~~~~e~~~~~~~~~G~v~~~~~-~~~~~~s~FfItl~~~~~ld~~-----~~vfG~V~~G~~vl~~I~~~~~~  155 (174)
                       ...++.++++|.....++.+|+||||+. +|++++|||||++.+.|+||++     |+|||+|++|||||++|++++++
T Consensus        66 -~~~~g~~~~dE~~~~l~~~~G~lsmA~~~~p~t~gSQFfI~~~~~~~Ld~~~~~~~~tvFG~Vv~G~dvv~~I~~~~~~  144 (166)
T 1v9t_A           66 -QKKPNPPIKNEADNGLRNTRGTIAMARTADKDSATSQFFINVADNAFLDHGQRDFGYAVFGKVVKGMDVADKISQVPTH  144 (166)
T ss_dssp             -BCCCCCCBCCCGGGSCCCCTTEEEECCCSSTTCBCSCEEEESSCCGGGSCCSSCCCCCEEEEEEECHHHHHHHHTSCEE
T ss_pred             -CCCCCCcccccccccccCCceEEEEeecCCCCCccceEEEEeCCccccCCccCcCCeeEEEEEecCHHHHHHHHhCCCC
Confidence             2234667888987767778999999997 5999999999999999999998     99999999999999999999987


Q ss_pred             C-----CCcccceEEeEeeeec
Q 030603          156 S-----GRTSQTVVIEDCGQLA  172 (174)
Q Consensus       156 ~-----~~P~~~i~I~~~g~l~  172 (174)
                      .     ++|.++|+|.+|++++
T Consensus       145 ~~~~~~~~P~~~v~I~~~~v~~  166 (166)
T 1v9t_A          145 DVGPYQNVPSKPVVILSATVLP  166 (166)
T ss_dssp             EETTEEEEESSCCBEEEEEECC
T ss_pred             CCCccCCCcCCCeEEEEEEEeC
Confidence            5     6899999999999874

>2hq6_A Serologically defined colon cancer antigen 10; protein folding, peptidyl-prolyl CIS-trans isomerase, struct genomics; 1.75A {Homo sapiens}

Probab=100.00  E-value=1.7e-46  Score=285.32  Aligned_cols=154  Identities=39%  Similarity=0.728  Sum_probs=141.8

Q ss_pred             CCeEEEEEEECCEeceEEEEEEcCCCChHHHHHHHHHhcCCCCCCCCCccccccCCEEEEeecCceEeeCCCCCCCCCCC
Q 030603            3 NPRVFFDILIGKMNKGRVVMELFADVTPKTAENFRALCTGEKGIGMSGKPLHYKGSTFHRIIPNFMCQGGDFTRGNGTGG   82 (174)
Q Consensus         3 ~p~v~~di~~~~t~~G~i~i~L~~~~aP~~~~nF~~l~~~~~~~~~~g~~~~y~g~~f~ri~~~~~iq~G~~~~~~~~~~   82 (174)
                      +++|+|+     |+.|+|+||||++.||++|+||++||+.       |   ||+|+.||||+|+|||||||+. +++.++
T Consensus        24 ~~~V~l~-----T~~G~I~ieL~~~~aP~tv~NF~~L~~~-------g---~Y~g~~FhRvi~~f~iQgGd~~-~~g~gg   87 (185)
T 2hq6_A           24 NGKVLLK-----TTAGDIDIELWSKEAPKACRNFIQLCLE-------A---YYDNTIFHRVVPGFIVQGGDPT-GTGSGG   87 (185)
T ss_dssp             BCEEEEE-----ETTEEEEEEEBTTTCHHHHHHHHHHHHT-------T---TTTTEECCEEETTTEEEECCTT-SSSSCC
T ss_pred             CCEEEEE-----eCCccEEEEEeCCCCcHHHHHHHHHhhc-------C---ccCCCEEEEEECCCEEEcCCCC-CCCCCC
Confidence            6788888     8999999999999999999999999953       3   4999999999999999999986 677888


Q ss_pred             CcccCCccCCCcc-CCCCCCCeEEEeeecCCCCCcceEEEEccCCCCCCCCceEEEEEEcChHHH--HHHHhCCCCC-CC
Q 030603           83 ESIYGMKFADENF-KMKHTGPGILSMANAGPNTNGSQFFICTQKTPWLDGKHVVFGKVVDGYSVI--KDMEKVGSES-GR  158 (174)
Q Consensus        83 ~~~~~~~~~~e~~-~~~~~~~G~v~~~~~~~~~~~s~FfItl~~~~~ld~~~~vfG~V~~G~~vl--~~I~~~~~~~-~~  158 (174)
                      .++++.++++|.. .++|+.+|+||||+.++++++|||||+++++|+||++|+|||+|+ |++++  ++|++++++. ++
T Consensus        88 ~si~g~~~~dE~~~~l~h~~~G~lsMA~~g~~s~gSQFFIt~~~~~~LDg~~tVFG~V~-G~~v~~~~~i~~~~~~~~~~  166 (185)
T 2hq6_A           88 ESIYGAPFKDEFHSRLRFNRRGLVAMANAGSHDNGSQFFFTLGRADELNNKHTIFGKVT-GDTVYNMLRLSEVDIDDDER  166 (185)
T ss_dssp             CCTTSSCBCCCCBTTBCSCSSSEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEC-GGGHHHHHHTTCSCBCTTSC
T ss_pred             CcccCCccccccccCcccCCCeEEEEccCCCCCccceEEEECCCCCccCCCceEEEEEE-eCeeehhhHHhhCCcCCCCC
Confidence            8999999999986 688899999999999999999999999999999999999999999 88874  6899999876 99


Q ss_pred             cccceEEeEeeeecc
Q 030603          159 TSQTVVIEDCGQLAE  173 (174)
Q Consensus       159 P~~~i~I~~~g~l~~  173 (174)
                      |.++|+|.+|++|+|
T Consensus       167 P~~~v~I~~~~v~~~  181 (185)
T 2hq6_A          167 PHNPHKIKSCEVLFN  181 (185)
T ss_dssp             BSSCCEEEEEEEEEC
T ss_pred             CCCCeEEEEEEEeCC
Confidence            999999999999976

>1lop_A Cyclophilin A; rotamase, isomerase-isomerase inhibitor complex; HET: NIT; 1.80A {Escherichia coli} SCOP: b.62.1.1 PDB: 2nul_A 2rs4_A

Probab=100.00  E-value=3.7e-46  Score=279.13  Aligned_cols=145  Identities=30%  Similarity=0.529  Sum_probs=130.0

Q ss_pred             EeceEEEEEEcCCCChHHHHHHHHHhcCCCCCCCCCccccccCCEEEEeecCceEeeCCCCCCCCCCCCcccCCccCCCc
Q 030603           15 MNKGRVVMELFADVTPKTAENFRALCTGEKGIGMSGKPLHYKGSTFHRIIPNFMCQGGDFTRGNGTGGESIYGMKFADEN   94 (174)
Q Consensus        15 t~~G~i~i~L~~~~aP~~~~nF~~l~~~~~~~~~~g~~~~y~g~~f~ri~~~~~iq~G~~~~~~~~~~~~~~~~~~~~e~   94 (174)
                      |+.|+|+|+||++.||++|+||++||+       .|   ||+|+.|||++|+|||||||+..+.   +.+.++.++++|.
T Consensus         6 T~~G~i~ieL~~~~aP~t~~NF~~L~~-------~g---~Y~g~~FhRvi~~f~iQgGd~~~~~---g~~~~g~~~~dE~   72 (164)
T 1lop_A            6 TNHGDIVIKTFDDKAPETVKNFLDYCR-------EG---FYNNTIFHRVINGFMIQGGGFEPGM---KQKATKEPIKNEA   72 (164)
T ss_dssp             ETTEEEEEEECTTTSHHHHHHHHHHHH-------TT---TTTTEECCEEETTTEEEESSEETTT---EECCCCCCBCCCC
T ss_pred             eCCCCEEEEEeCCCCcHHHHHHHHHHh-------cC---CCCCCEEEEEeCCceEecCCcccCC---CcCCCCCcccccc
Confidence            899999999999999999999999994       34   4999999999999999999987433   3456678899998


Q ss_pred             cCCCCCCCeEEEeeec-CCCCCcceEEEEccCCCCCCCC--------ceEEEEEEcChHHHHHHHhCCCCC-----CCcc
Q 030603           95 FKMKHTGPGILSMANA-GPNTNGSQFFICTQKTPWLDGK--------HVVFGKVVDGYSVIKDMEKVGSES-----GRTS  160 (174)
Q Consensus        95 ~~~~~~~~G~v~~~~~-~~~~~~s~FfItl~~~~~ld~~--------~~vfG~V~~G~~vl~~I~~~~~~~-----~~P~  160 (174)
                      ....++.+|+||||+. +|++++|||||++.+.|+||++        |+|||+|++|||||++|++++++.     ++|.
T Consensus        73 ~~~l~~~~G~lsmA~~~~p~s~gSQFfI~~~~~~~Ld~~~~~~~~~~~tvFG~Vv~G~dvv~~I~~~~t~~~~~~~~~P~  152 (164)
T 1lop_A           73 NNGLKNTRGTLAMARTQAPHSATAQFFINVVDNDFLNFSGESLQGWGYCVFAEVVDGMDEVDKIKGVATGRSGMHQDVPK  152 (164)
T ss_dssp             CSSCCCCTTEEEECCCSSTTCBCSCEEEESSCCGGGSCCSSSTTTSCCCEEEEEEECHHHHHHHHTSCEEEETTEEEEES
T ss_pred             ccccccCccEEEEeecCCCCCccceEEEEcCCccccCCccccccCCceEEEEEEecCHHHHHHHHhCCcCCccccCCCcC
Confidence            7544557999999975 7999999999999999999998        999999999999999999999874     8999


Q ss_pred             cceEEeEeeeec
Q 030603          161 QTVVIEDCGQLA  172 (174)
Q Consensus       161 ~~i~I~~~g~l~  172 (174)
                      ++|+|.+|++++
T Consensus       153 ~~v~I~~~~v~~  164 (164)
T 1lop_A          153 EDVIIESVTVSE  164 (164)
T ss_dssp             SCCEEEEEEECC
T ss_pred             CCeEEEEEEEeC
Confidence            999999999974

>3s6m_A Peptidyl-prolyl CIS-trans isomerase; seattle structural genomics center for infectious disease; 1.65A {Burkholderia pseudomallei} SCOP: b.62.1.1 PDB: 3t1u_A*

Probab=100.00  E-value=8.6e-46  Score=278.02  Aligned_cols=151  Identities=32%  Similarity=0.511  Sum_probs=133.5

Q ss_pred             CCeEEEEEEECCEeceEEEEEEcCCCChHHHHHHHHHhcCCCCCCCCCccccccCCEEEEeecCceEeeCCCCCCCCCCC
Q 030603            3 NPRVFFDILIGKMNKGRVVMELFADVTPKTAENFRALCTGEKGIGMSGKPLHYKGSTFHRIIPNFMCQGGDFTRGNGTGG   82 (174)
Q Consensus         3 ~p~v~~di~~~~t~~G~i~i~L~~~~aP~~~~nF~~l~~~~~~~~~~g~~~~y~g~~f~ri~~~~~iq~G~~~~~~~~~~   82 (174)
                      +|+|.|+     |+.|+|+|+||++.||++|+||++||+.       |   ||+++.|||++|+|||||||+....+   
T Consensus         3 ~~~v~l~-----T~~G~i~ieL~~~~aP~t~~NF~~L~~~-------g---~Y~g~~FhRvi~~f~iQgGd~~~~~~---   64 (167)
T 3s6m_A            3 GSMVELH-----TNHGVIKLELDEAKAPKTVENFLNYVKK-------G---HYDGTIFHRVINGFMIQGGGFEPGLK---   64 (167)
T ss_dssp             CCEEEEE-----ETTEEEEEEECTTTCHHHHHHHHHHHHH-------T---TTTTEECCEEETTTEEEESSEETTTE---
T ss_pred             CcEEEEE-----eCCceEEEEEeCCCCcHHHHHHHHHhhh-------c---ccCCCEeEEecCCcEEEeccccCCCC---
Confidence            6788887     9999999999999999999999999953       3   49999999999999999999864322   


Q ss_pred             CcccCCccCCCccCCCCCCCeEEEeee-cCCCCCcceEEEEccCCCCCCCC--------ceEEEEEEcChHHHHHHHhCC
Q 030603           83 ESIYGMKFADENFKMKHTGPGILSMAN-AGPNTNGSQFFICTQKTPWLDGK--------HVVFGKVVDGYSVIKDMEKVG  153 (174)
Q Consensus        83 ~~~~~~~~~~e~~~~~~~~~G~v~~~~-~~~~~~~s~FfItl~~~~~ld~~--------~~vfG~V~~G~~vl~~I~~~~  153 (174)
                      ....+.++++|.....++.+|+||||+ .+|++++|||||++.+.++||++        |+|||+|++|||||++|++++
T Consensus        65 ~~~~~~~~~~E~~~~l~~~~G~lsmA~~~~p~t~gSQFfI~~~~~~~Ld~~~~~~~~~~~~VFG~Vv~G~dvv~~I~~~~  144 (167)
T 3s6m_A           65 QKPTDAPIANEANNGLKNDTYTIAMARTNDPHSATAQFFINVNDNEFLNHSSPTPQGWGYAVFGKVVEGQDIVDKIKAVK  144 (167)
T ss_dssp             ECCCCCCBCCCGGGCCCCCTTEEEECCCSSTTCBCSCEEEESSCCGGGSCCSSSTTTCCCCEEEEEEECHHHHHHHTTSC
T ss_pred             CCCCCCccCCcccccccCCccEEEEecCCCCCCccceEEEEcCCchhcCCcccccCCCCceEEEEEEcCHHHHHHHHcCC
Confidence            233466788887655566899999999 57999999999999999999998        999999999999999999999


Q ss_pred             CCC-----CCcccceEEeEeeee
Q 030603          154 SES-----GRTSQTVVIEDCGQL  171 (174)
Q Consensus       154 ~~~-----~~P~~~i~I~~~g~l  171 (174)
                      ++.     ++|.++|+|.+|.+|
T Consensus       145 t~~~~~~~~~P~~~v~I~~~~il  167 (167)
T 3s6m_A          145 TGSKGFHQDVPNDDVVIEKAVVV  167 (167)
T ss_dssp             BBC---CBTCBSSCCEEEEEEEC
T ss_pred             cCCCcccCCCcCCCeEEEEEEEC
Confidence            885     799999999999986

>3bkp_A Cyclophilin; malaria, isomerase, structural GENO structural genomics consortium, SGC; 1.80A {Toxoplasma gondii}

Probab=100.00  E-value=3.6e-45  Score=286.55  Aligned_cols=154  Identities=32%  Similarity=0.566  Sum_probs=139.5

Q ss_pred             CCeEEEEEEECCEeceEEEEEEcCCCChHHHHHHHHHhcCCCCCCCCCccccccCCEEEEeecCceEeeCCCCCCCCCCC
Q 030603            3 NPRVFFDILIGKMNKGRVVMELFADVTPKTAENFRALCTGEKGIGMSGKPLHYKGSTFHRIIPNFMCQGGDFTRGNGTGG   82 (174)
Q Consensus         3 ~p~v~~di~~~~t~~G~i~i~L~~~~aP~~~~nF~~l~~~~~~~~~~g~~~~y~g~~f~ri~~~~~iq~G~~~~~~~~~~   82 (174)
                      +++|.|+     |++|+|+|+||++.||++|+||++||+.       |   ||+|+.||||+|+|||||||+. +++.++
T Consensus        21 ~~~V~l~-----T~~G~I~ieL~~d~aP~tv~NF~~L~~~-------g---~Ydgt~FhRVi~~FmiQgGdp~-~~G~Gg   84 (232)
T 3bkp_A           21 RGKVVLH-----TSLGDLDVELWARECPLACRNFVQLCLE-------G---YYVNTIFHRVVKDFIVQGGDPT-GTGRGG   84 (232)
T ss_dssp             BCEEEEE-----ETTEEEEEEEBTTTCHHHHHHHHHHHHH-------T---TTTTCBEEEEETTTEEEECCTT-SSSSCC
T ss_pred             CCEEEEE-----ECCCcEEEEEcCCCCcHHHHHHHHHhhc-------C---ccCCCEEEEEeCCCEEEcCCCC-CCCCCC
Confidence            5678887     8999999999999999999999999953       3   4999999999999999999987 678888


Q ss_pred             Cccc--CCccCCCcc-CCCCCCCeEEEeeecCC--------------CCCcceEEEEccCCCCCCCCceEEEEEEcChHH
Q 030603           83 ESIY--GMKFADENF-KMKHTGPGILSMANAGP--------------NTNGSQFFICTQKTPWLDGKHVVFGKVVDGYSV  145 (174)
Q Consensus        83 ~~~~--~~~~~~e~~-~~~~~~~G~v~~~~~~~--------------~~~~s~FfItl~~~~~ld~~~~vfG~V~~G~~v  145 (174)
                      .+++  +..+++|.. .++|+.+|+||||+.++              ++++|||||++.++|+||++|+|||+|+ ||+|
T Consensus        85 ~si~~~g~~f~dE~~~~l~h~~~G~lsMA~~g~~~~~~~n~e~g~~~~sngSQFFIt~~~~p~LDg~~tVFG~Vv-g~~v  163 (232)
T 3bkp_A           85 ADTTFDGKPFDVETHPRLKFRYRGLVGVANLGRSSKDAENDERGRSLGTNGNQFFITLARADVLNNAYTLFGKVT-GHTL  163 (232)
T ss_dssp             CCCTTTTCCBCCCCCTTCCCCSTTEEEECCCC----------------CBCSCEEEESSCCGGGTTTSCEEEEEC-GGGH
T ss_pred             CccccCCCccCCccccCcCcCCCeEEEEeccCCcccccccccccccCCCcCCEEEEECCCCcccCCCccEEEEEE-eCch
Confidence            8888  888999986 68889999999999986              6999999999999999999999999999 7766


Q ss_pred             --HHHHHhCCCCC-CCcccceEEeEeeeecc
Q 030603          146 --IKDMEKVGSES-GRTSQTVVIEDCGQLAE  173 (174)
Q Consensus       146 --l~~I~~~~~~~-~~P~~~i~I~~~g~l~~  173 (174)
                        |++|++++++. ++|.++|+|.+|++|++
T Consensus       164 ~~v~kI~~~~t~~~~~P~~~i~I~~~~vl~d  194 (232)
T 3bkp_A          164 YNLMKFNDLEVGKEDRPMTPPFIKSVDVLWN  194 (232)
T ss_dssp             HHHHHHTTSCBCGGGCBSSCCBEEEEEEEEC
T ss_pred             HHHHHHHcCCcCCCCCcCCCeEEEEEEEEcC
Confidence              89999999977 99999999999999975

>3rfy_A Peptidyl-prolyl CIS-trans isomerase CYP38, chloro; cyclophilin, peptidyl prolyl isomerase, ppiase, TLP,; 2.39A {Arabidopsis thaliana}

Probab=100.00  E-value=2.2e-37  Score=255.49  Aligned_cols=148  Identities=24%  Similarity=0.355  Sum_probs=117.5

Q ss_pred             CCeEEEEEEEC---CEeceEEEEEEcCCCChHHHHHHHHHhcCCCCCCCCCccccccCCEEEEeecCceEeeCCCCCCCC
Q 030603            3 NPRVFFDILIG---KMNKGRVVMELFADVTPKTAENFRALCTGEKGIGMSGKPLHYKGSTFHRIIPNFMCQGGDFTRGNG   79 (174)
Q Consensus         3 ~p~v~~di~~~---~t~~G~i~i~L~~~~aP~~~~nF~~l~~~~~~~~~~g~~~~y~g~~f~ri~~~~~iq~G~~~~~~~   79 (174)
                      ++.|.|++.+.   +++.|+|+|+||++.||+||+||++||+       .|   ||+|+.|||+ ++|||||||+. +++
T Consensus       170 ra~V~m~t~~~~~~~~~~G~I~IeL~~d~AP~Tv~NFl~L~~-------~G---fYdGt~FHRV-~gFmIQgGDp~-g~G  237 (369)
T 3rfy_A          170 RASVDMKVKIKDNPNIEDCVFRIVLDGYNAPVTAGNFVDLVE-------RH---FYDGMEIQRS-DGFVVQTGDPE-GPA  237 (369)
T ss_dssp             EEEEEEEEECCSCSSCSEEEEEEEEETTTCHHHHHHHHHHHH-------TT---TTTTEECEEE-EEEEECCCCCC-CCC
T ss_pred             CeEEEEEEeccCCCcccceEEEEEEeCCCCcHHHHHHHHHhh-------cC---CcCCCeeeee-CCeeEecCCCC-CCC
Confidence            34455554432   2468999999999999999999999995       33   4999999999 99999999986 333


Q ss_pred             CC---------------------CCcccCCccCCCc-----cCCCCCCCeEEEeeec--CCCCCcceEEEEc-------c
Q 030603           80 TG---------------------GESIYGMKFADEN-----FKMKHTGPGILSMANA--GPNTNGSQFFICT-------Q  124 (174)
Q Consensus        80 ~~---------------------~~~~~~~~~~~e~-----~~~~~~~~G~v~~~~~--~~~~~~s~FfItl-------~  124 (174)
                      .+                     +.++++..+.+|.     ..++|+.+|+|||++.  ++++++|||||++       .
T Consensus       238 ~G~~~~~~g~~~~iP~E~~~~G~g~piyg~~fedegf~~~~~~L~h~~~G~LsMAns~~gPnSngSQFFItl~d~~L~~~  317 (369)
T 3rfy_A          238 EGFIDPSTEKTRTVPLEIMVTGEKTPFYGSTLEELGLYKAQVVIPFNAFGTMAMAREEFENDSGSSQVFWLLKESELTPS  317 (369)
T ss_dssp             SCCCSCCCCCCCSSSSSSCSSSSCCSCCCSSTGGGTEEEEEEEECCCCCCCCCCSSCCCCCCCSSCCCCCCCEEEEECSC
T ss_pred             CCccCcccCcCcccCccccccCCCCCcCCCccccccccccccccccCCCceEEEeecCCCCCCccceEEEEecccccCCC
Confidence            33                     2344555555553     3688999999999997  7999999999999       4


Q ss_pred             CCCCCCCCceEEEEEEcChHHHHHHHhCCCCCCCcccceEEeE
Q 030603          125 KTPWLDGKHVVFGKVVDGYSVIKDMEKVGSESGRTSQTVVIED  167 (174)
Q Consensus       125 ~~~~ld~~~~vfG~V~~G~~vl~~I~~~~~~~~~P~~~i~I~~  167 (174)
                      +.++||++|+|||+|++|||||++|++.     .+...|+|.+
T Consensus       318 ~~~~LDgkytVFG~VveGmdVVdkI~~G-----D~I~sv~I~~  355 (369)
T 3rfy_A          318 NSNILDGRYAVFGYVTDNEDFLADLKVG-----DVIESIQVVS  355 (369)
T ss_dssp             CCSSSCSCEEEEEEEEESTTGGGGCCTT-----CEEEEEEEEE
T ss_pred             CCcccCCCeeEEEEEecCHHHHHHHhCC-----CceEEEEEec
Confidence            6899999999999999999999999883     3444455543

>3kop_A Uncharacterized protein; protein with A cyclophilin-like fold, structural genomics, J center for structural genomics, JCSG; 1.90A {Arthrobacter SP}

Probab=95.83  E-value=0.088  Score=38.95  Aligned_cols=32  Identities=22%  Similarity=0.430  Sum_probs=25.0

Q ss_pred             EEEEEECCEece-EEEEEEcCCCChHHHHHHHHHh
Q 030603            7 FFDILIGKMNKG-RVVMELFADVTPKTAENFRALC   40 (174)
Q Consensus         7 ~~di~~~~t~~G-~i~i~L~~~~aP~~~~nF~~l~   40 (174)
                      |+.|.+  +..| .++.+|..+.||+||+.|.++.
T Consensus        23 ~i~itl--~~~g~~~~A~Lldd~APkTcaA~~~~L   55 (188)
T 3kop_A           23 YINITL--EKRGVTCKALLLDDVAPRTSKAVWDAL   55 (188)
T ss_dssp             EEEEEE--TTTTEEEEEEECTTTSHHHHHHHHHHC
T ss_pred             EEEEEE--ecCCeEEEEEEccccChHHHHHHHHhC
Confidence            555544  3445 4889999999999999999986

>2nnz_A Hypothetical protein; beta-barrel, structural genomics, ontario centre for structu proteomics, OCSP, unknown function; NMR {Archaeoglobus fulgidus}

Probab=94.95  E-value=0.066  Score=38.73  Aligned_cols=105  Identities=18%  Similarity=0.220  Sum_probs=59.4

Q ss_pred             EEEEECCEeceEEEEEEcCCCChHHHHHHHHHhcCCCCCCCCCccccccCCEEEEeecCceEeeCCCCCCCCCCCCcccC
Q 030603            8 FDILIGKMNKGRVVMELFADVTPKTAENFRALCTGEKGIGMSGKPLHYKGSTFHRIIPNFMCQGGDFTRGNGTGGESIYG   87 (174)
Q Consensus         8 ~di~~~~t~~G~i~i~L~~~~aP~~~~nF~~l~~~~~~~~~~g~~~~y~g~~f~ri~~~~~iq~G~~~~~~~~~~~~~~~   87 (174)
                      +.|.+++   ..++++|+.+.||++++.|+++.-             +... +.+. .+..+-  +..            
T Consensus        32 I~i~~~~---~~~~a~L~D~~aP~Ta~~f~~~LP-------------l~~~-~~~~-g~E~y~--~lp------------   79 (153)
T 2nnz_A           32 LRIRFES---AECEVELYEEWAPETVRAIADALP-------------IKST-ANRW-GDEIYF--TTQ------------   79 (153)
T ss_dssp             EEEEETT---EEEEECCCTTSCHHHHHHHHHTCS-------------EEEE-EEEE-TTEEEE--CCS------------
T ss_pred             EEEEECC---EEEEEEEcCCCCHHHHHHHHHhCC-------------cEEE-HHhh-CCcEEE--ECC------------
Confidence            3344444   569999999999999999999872             1111 2221 111111  110            


Q ss_pred             CccCC-CccCCCCCCCeEEEeeecCCCCCcceEEEEccCCCCCC------CCceEEEEEEcChHHHHHHH
Q 030603           88 MKFAD-ENFKMKHTGPGILSMANAGPNTNGSQFFICTQKTPWLD------GKHVVFGKVVDGYSVIKDME  150 (174)
Q Consensus        88 ~~~~~-e~~~~~~~~~G~v~~~~~~~~~~~s~FfItl~~~~~ld------~~~~vfG~V~~G~~vl~~I~  150 (174)
                      ..... |+. .....+|.|+.-..+.     .+.|-.++.|...      ..-.+||+|.+|++.|.++.
T Consensus        80 ~~l~~~en~-~~~~~~GDI~Yy~pg~-----~LaIFYg~~p~s~~e~~~as~~~~lG~I~~gle~L~~~~  143 (153)
T 2nnz_A           80 VAVEKEENS-KDVVELGDVAYWIPGK-----AICLFFGKTPISDDKIRPASAVNVIGRIVNSMEGLKGVA  143 (153)
T ss_dssp             CCCCCSSCC-BCCCCTTEEEEETTTT-----EEEEESSCCTTCTTSCCCCSSEEEEEECCSCCCCGGGCC
T ss_pred             CCCCCCCCC-cccCCCCeEEEeCCCC-----EEEEEECCccccccccccccccEEEEEEccCHHHHhhCC
Confidence            01111 222 2334578888765432     3666666664221      23578999999988776554

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	174
d2igva1	172	b.62.1.1 (A:1-172) Cyclophilin (eukaryotic) {Caeno	5e-65
d1ihga2	195	b.62.1.1 (A:2-196) Cyclophilin 40 isomerase domain	1e-61
d1qnga_	170	b.62.1.1 (A:) Cyclophilin (eukaryotic) {Plasmodium	1e-60
d1a33a_	174	b.62.1.1 (A:) Cyclophilin (eukaryotic) {Nematode (	1e-59
d2cfea1	162	b.62.1.1 (A:1-162) Cyclophilin-like allergen Mal s	2e-58
d2z6wa1	164	b.62.1.1 (A:2-165) Mitochondrial peptidyl-prolyl c	3e-54
d1qoia_	173	b.62.1.1 (A:) Cyclophilin (eukaryotic) {Human (Hom	6e-53
d2r99a1	161	b.62.1.1 (A:139-299) Mitochondrial peptidyl-prolyl	8e-53
d2c3ba1	171	b.62.1.1 (A:1-171) Cyclophilin (eukaryotic) {Asper	1e-51
d1z81a1	186	b.62.1.1 (A:25-210) Cyclophilin (eukaryotic) {Plas	4e-50
d1h0pa_	182	b.62.1.1 (A:) Cyclophilin (eukaryotic) {Caenorhabd	5e-49
d2rmca_	182	b.62.1.1 (A:) Cyclophilin (eukaryotic) {Mouse (Mus	8e-49
d1xo7a_	166	b.62.1.1 (A:) Cyclophilin (eukaryotic) {Trypanosom	9e-49
d1zkca1	178	b.62.1.1 (A:280-457) Peptidyl-prolyl cis-trans iso	6e-46
d1xwna1	166	b.62.1.1 (A:1-166) Peptidyl-prolyl cis-trans isome	4e-43
d1w74a_	171	b.62.1.1 (A:) Peptidyl-prolyl cis-trans isomerase	7e-40
d2ok3a1	159	b.62.1.1 (A:1-159) Cyclophilin-like protein PPIL3B	1e-38
d2a2na1	164	b.62.1.1 (A:483-646) Peptidylprolyl isomerase doma	4e-35
d2fu0a1	155	b.62.1.1 (A:5-159) Putative cyclophilin PFE0505w {	3e-30
d2b71a1	169	b.62.1.1 (A:23-191) Cyclophilin-like protein PY006	6e-30
d1lopa_	164	b.62.1.1 (A:) Peptidyl-prolyl cis-trans isomerase	4e-29
d1v9ta_	166	b.62.1.1 (A:) Peptidyl-prolyl cis-trans isomerase	1e-27

>d2igva1 b.62.1.1 (A:1-172) Cyclophilin (eukaryotic) {Caenorhabditis elegans, isoform 3 [TaxId: 6239]} Length = 172

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Caenorhabditis elegans, isoform 3 [TaxId: 6239]

 Score =  195 bits (495), Expect = 5e-65
 Identities = 127/171 (74%), Positives = 142/171 (83%)

Query: 1   MTNPRVFFDILIGKMNKGRVVMELFADVTPKTAENFRALCTGEKGIGMSGKPLHYKGSTF 60
           M+  +VFFDI IG    GR+VMEL+ DV PKTA NFRALCTGE GIG SGKPLH+KGS F
Sbjct: 1   MSRSKVFFDITIGGKASGRIVMELYDDVVPKTAGNFRALCTGENGIGKSGKPLHFKGSKF 60

Query: 61  HRIIPNFMCQGGDFTRGNGTGGESIYGMKFADENFKMKHTGPGILSMANAGPNTNGSQFF 120
           HRIIPNFM QGGDFTRGNGTGGESIYG KF DENFK KHTGPG+LSMANAGPNTNGSQFF
Sbjct: 61  HRIIPNFMIQGGDFTRGNGTGGESIYGEKFPDENFKEKHTGPGVLSMANAGPNTNGSQFF 120

Query: 121 ICTQKTPWLDGKHVVFGKVVDGYSVIKDMEKVGSESGRTSQTVVIEDCGQL 171
           +CT KT WLDGKHVVFG+VV+G  V+K +E  GS+SG+  +  +I DCGQL
Sbjct: 121 LCTVKTEWLDGKHVVFGRVVEGLDVVKAVESNGSQSGKPVKDCMIADCGQL 171

>d1ihga2 b.62.1.1 (A:2-196) Cyclophilin 40 isomerase domain {Cow (Bos taurus) [TaxId: 9913]} Length = 195

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin 40 isomerase domain
species: Cow (Bos taurus) [TaxId: 9913]

 Score =  187 bits (475), Expect = 1e-61
 Identities = 112/174 (64%), Positives = 130/174 (74%), Gaps = 1/174 (0%)

Query: 1   MTNPRVFFDILIGKMNKGRVVMELFADVTPKTAENFRALCTGEKGI-GMSGKPLHYKGST 59
            +NPRVFFD+ IG    GR+V+ELFAD+ PKTAENFRALCTGEKGI   +GKPLH+KG  
Sbjct: 12  PSNPRVFFDVDIGGERVGRIVLELFADIVPKTAENFRALCTGEKGIGPTTGKPLHFKGCP 71

Query: 60  FHRIIPNFMCQGGDFTRGNGTGGESIYGMKFADENFKMKHTGPGILSMANAGPNTNGSQF 119
           FHRII  FM QGGDF+  NGTGGESIYG KF DENF  KH   G+LSMANAG NTNGSQF
Sbjct: 72  FHRIIKKFMIQGGDFSNQNGTGGESIYGEKFEDENFHYKHDKEGLLSMANAGSNTNGSQF 131

Query: 120 FICTQKTPWLDGKHVVFGKVVDGYSVIKDMEKVGSESGRTSQTVVIEDCGQLAE 173
           FI T  TP LDGKHVVFG+V+ G  V K +E V  +  + ++  VI +CG+L E
Sbjct: 132 FITTVPTPHLDGKHVVFGQVIKGMGVAKILENVEVKGEKPAKLCVIAECGELKE 185

>d1qnga_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Plasmodium falciparum [TaxId: 5833]} Length = 170

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Plasmodium falciparum [TaxId: 5833]

 Score =  183 bits (465), Expect = 1e-60
 Identities = 112/170 (65%), Positives = 131/170 (77%), Gaps = 1/170 (0%)

Query: 2   TNPRVFFDILIGKMNKGRVVMELFADVTPKTAENFRALCTGEKGIGMSGKPLHYKGSTFH 61
              +VFFDI I   N GR++ ELF+D+TP+T ENFRALCTGEK     GK LHYK S FH
Sbjct: 2   KRSKVFFDISIDNSNAGRIIFELFSDITPRTCENFRALCTGEKIGS-RGKNLHYKNSIFH 60

Query: 62  RIIPNFMCQGGDFTRGNGTGGESIYGMKFADENFKMKHTGPGILSMANAGPNTNGSQFFI 121
           RIIP FMCQGGD T GNG+GGESIYG  F DENF MKH  PG+LSMANAGPNTN SQFFI
Sbjct: 61  RIIPQFMCQGGDITNGNGSGGESIYGRSFTDENFNMKHDQPGLLSMANAGPNTNSSQFFI 120

Query: 122 CTQKTPWLDGKHVVFGKVVDGYSVIKDMEKVGSESGRTSQTVVIEDCGQL 171
                PWLDGKHVVFGKV++G +V+++MEK G++SG   ++VVI DCG+L
Sbjct: 121 TLVPCPWLDGKHVVFGKVIEGMNVVREMEKEGAKSGYVKRSVVITDCGEL 170

>d1a33a_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Nematode (Brugia malayi) [TaxId: 6279]} Length = 174

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Nematode (Brugia malayi) [TaxId: 6279]

 Score =  181 bits (460), Expect = 1e-59
 Identities = 101/171 (59%), Positives = 119/171 (69%), Gaps = 2/171 (1%)

Query: 3   NPRVFFDILIGKMNKGRVVMELFADVTPKTAENFRALCTGEKGIG-MSGKPLHYKGSTFH 61
             RVF D+ I     GR+VMEL+ D+ P+T  NF  LCTG  G G +SGKPLHYKGSTFH
Sbjct: 3   RRRVFLDVTIDGNLAGRIVMELYNDIAPRTCNNFLMLCTGMAGTGKISGKPLHYKGSTFH 62

Query: 62  RIIPNFMCQGGDFTRGNGTGGESIYGMKFADENFKMKHTGPGILSMANAGPNTNGSQFFI 121
           R+I NFM QGGDFT+G+GTGGESIYG  F DE F MKH  P ++SMAN GPNTNGSQFFI
Sbjct: 63  RVIKNFMIQGGDFTKGDGTGGESIYGGMFDDEEFVMKHDEPFVVSMANKGPNTNGSQFFI 122

Query: 122 CTQKTPWLDGKHVVFGKVVDGYSVIKDMEKVGSES-GRTSQTVVIEDCGQL 171
            T   P L+  HVVFGKVV G  V+  +E + + S  R    VVI +CG+L
Sbjct: 123 TTTPAPHLNNIHVVFGKVVSGQEVVTKIEYLKTNSKNRPLADVVILNCGEL 173

>d2cfea1 b.62.1.1 (A:1-162) Cyclophilin-like allergen Mal s 6 {Malassezia sympodialis [TaxId: 76777]} Length = 162

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin-like allergen Mal s 6
species: Malassezia sympodialis [TaxId: 76777]

 Score =  177 bits (451), Expect = 2e-58
 Identities = 105/166 (63%), Positives = 120/166 (72%), Gaps = 7/166 (4%)

Query: 4   PRVFFDILIGKMNKGRVVMELFADVTPKTAENFRALCTGEKGIGMSGKPLHYKGSTFHRI 63
             VFFDI       G +  +LF DV PKTA NFRALCTGEKG G       Y GS FHR+
Sbjct: 2   SNVFFDITKNGAPLGTIKFKLFDDVVPKTAANFRALCTGEKGFG-------YAGSHFHRV 54

Query: 64  IPNFMCQGGDFTRGNGTGGESIYGMKFADENFKMKHTGPGILSMANAGPNTNGSQFFICT 123
           IP+FM QGGDFT GNGTGG+SIYG KFADENF++KH  PG+LSMANAGPNTNGSQFFI T
Sbjct: 55  IPDFMLQGGDFTAGNGTGGKSIYGAKFADENFQLKHNKPGLLSMANAGPNTNGSQFFITT 114

Query: 124 QKTPWLDGKHVVFGKVVDGYSVIKDMEKVGSESGRTSQTVVIEDCG 169
             T WLDGKHVVFG+V+DG +V+K +E  GS SG+    + I  CG
Sbjct: 115 VVTSWLDGKHVVFGEVIDGMNVVKAIEAEGSGSGKPRSRIEIAKCG 160

>d2z6wa1 b.62.1.1 (A:2-165) Mitochondrial peptidyl-prolyl cis-trans isomerase, cyclophilin F {Human (Homo sapiens) [TaxId: 9606]} Length = 164

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Mitochondrial peptidyl-prolyl cis-trans isomerase, cyclophilin F
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  167 bits (423), Expect = 3e-54
 Identities = 116/170 (68%), Positives = 133/170 (78%), Gaps = 7/170 (4%)

Query: 3   NPRVFFDILIGKMNKGRVVMELFADVTPKTAENFRALCTGEKGIGMSGKPLHYKGSTFHR 62
           NP V+ D+       GRVV+EL ADV PKTAENFRALCTGEKG         YKGSTFHR
Sbjct: 2   NPLVYLDVDANGKPLGRVVLELKADVVPKTAENFRALCTGEKGF-------GYKGSTFHR 54

Query: 63  IIPNFMCQGGDFTRGNGTGGESIYGMKFADENFKMKHTGPGILSMANAGPNTNGSQFFIC 122
           +IP+FMCQ GDFT  NGTGG+SIYG +F DENF +KH GPG+LSMANAGPNTNGSQFFIC
Sbjct: 55  VIPSFMCQAGDFTNHNGTGGKSIYGSRFPDENFTLKHVGPGVLSMANAGPNTNGSQFFIC 114

Query: 123 TQKTPWLDGKHVVFGKVVDGYSVIKDMEKVGSESGRTSQTVVIEDCGQLA 172
           T KT WLDGKHVVFG V++G  V+K +E  GS+SGRTS+ +VI DCGQL+
Sbjct: 115 TIKTDWLDGKHVVFGHVIEGMDVVKKIESFGSKSGRTSKKIVITDCGQLS 164

>d1qoia_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Human (Homo sapiens), U4/U6 snRNP-specific cyclophilin snucyp-20 [TaxId: 9606]} Length = 173

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Human (Homo sapiens), U4/U6 snRNP-specific cyclophilin snucyp-20 [TaxId: 9606]

 Score =  164 bits (415), Expect = 6e-53
 Identities = 99/172 (57%), Positives = 122/172 (70%), Gaps = 3/172 (1%)

Query: 1   MTNPRVFFDILIGKMNKGRVVMELFADVTPKTAENFRALCTGEKGIGMSGKPLHYKGSTF 60
             NP VFFD+ IG    GR+ +ELFADV PKTAENFR  CTGE      G P+ YKGSTF
Sbjct: 4   PVNPVVFFDVSIGGQEVGRMKIELFADVVPKTAENFRQFCTGEFR--KDGVPIGYKGSTF 61

Query: 61  HRIIPNFMCQGGDFTRGNGTGGESIYGMKFADENFKMKHTGPGILSMANAGPNTNGSQFF 120
           HR+I +FM QGGDF  G+GTG  SIY   FADENFK++H+ PG+LSMAN+GP+TNG QFF
Sbjct: 62  HRVIKDFMIQGGDFVNGDGTGVASIYRGPFADENFKLRHSAPGLLSMANSGPSTNGCQFF 121

Query: 121 ICTQKTPWLDGKHVVFGKVVDGYSVIKDMEKVGS-ESGRTSQTVVIEDCGQL 171
           I   K  WLDGKHVVFGK++DG  V++ +E V +  + +    VVI  CG++
Sbjct: 122 ITCSKCDWLDGKHVVFGKIIDGLLVMRKIENVPTGPNNKPKLPVVISQCGEM 173

>d2r99a1 b.62.1.1 (A:139-299) Mitochondrial peptidyl-prolyl cis-trans isomerase, cyclophilin F {Human (Homo sapiens) [TaxId: 9606]} Length = 161

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Mitochondrial peptidyl-prolyl cis-trans isomerase, cyclophilin F
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  163 bits (413), Expect = 8e-53
 Identities = 105/168 (62%), Positives = 125/168 (74%), Gaps = 7/168 (4%)

Query: 3   NPRVFFDILIGKMNKGRVVMELFADVTPKTAENFRALCTGEKGIGMSGKPLHYKGSTFHR 62
           NP+V+ DI IG    GR+ M L +DV P TAENFR LCT EKG         +KGS+FHR
Sbjct: 1   NPQVYMDIKIGNKPAGRIQMLLRSDVVPMTAENFRCLCTHEKGF-------GFKGSSFHR 53

Query: 63  IIPNFMCQGGDFTRGNGTGGESIYGMKFADENFKMKHTGPGILSMANAGPNTNGSQFFIC 122
           IIP FMCQGGDFT  NGTGG+SIYG KF DENF +KHTGPG+LSMAN+GPNTNGSQFF+ 
Sbjct: 54  IIPQFMCQGGDFTNHNGTGGKSIYGKKFDDENFILKHTGPGLLSMANSGPNTNGSQFFLT 113

Query: 123 TQKTPWLDGKHVVFGKVVDGYSVIKDMEKVGSESGRTSQTVVIEDCGQ 170
             KT WLDGKHVVFG+V +G  V++ +E  GS+ G+  Q V+I DCG+
Sbjct: 114 CDKTDWLDGKHVVFGEVTEGLDVLRQIEAQGSKDGKPKQKVIIADCGE 161

>d2c3ba1 b.62.1.1 (A:1-171) Cyclophilin (eukaryotic) {Aspergillus fumigatus [TaxId: 5085]} Length = 171

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Aspergillus fumigatus [TaxId: 5085]

 Score =  161 bits (407), Expect = 1e-51
 Identities = 104/177 (58%), Positives = 119/177 (67%), Gaps = 16/177 (9%)

Query: 4   PRVFFDI-----LIGKMNKGRVVMELFADVTPKTAENFRALCTGEKGIGMSGKPLHYKGS 58
            +VFFD+        +   GR+V  LF    PKTA+NFR LC    G         Y+ S
Sbjct: 2   SQVFFDVEYAPVGTAETKVGRIVFNLFDKDVPKTAKNFRELCKRPAGE-------GYRES 54

Query: 59  TFHRIIPNFMCQGGDFTRGNGTGGESIYGMKFADENFKMKHTGPGILSMANAGPNTNGSQ 118
           TFHRIIPNFM QGGDFTRGNGTGG SIYG KFADENF  KH   GILSMANAGPNTNGSQ
Sbjct: 55  TFHRIIPNFMIQGGDFTRGNGTGGRSIYGDKFADENFSRKHDKKGILSMANAGPNTNGSQ 114

Query: 119 FFICTQKTPWLDGKHVVFGKVVD--GYSVIKDMEKVGSESG--RTSQTVVIEDCGQL 171
           FFI T  T WLDGKHVVFG+V D   YSV+K++E +GS SG  R++    I +CG+L
Sbjct: 115 FFITTAVTSWLDGKHVVFGEVADEKSYSVVKEIEALGSSSGSVRSNTRPKIVNCGEL 171

>d1z81a1 b.62.1.1 (A:25-210) Cyclophilin (eukaryotic) {Plasmodium yoelii [TaxId: 5861]} Length = 186

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Plasmodium yoelii [TaxId: 5861]

 Score =  157 bits (398), Expect = 4e-50
 Identities = 85/174 (48%), Positives = 113/174 (64%), Gaps = 6/174 (3%)

Query: 2   TNPRVFFDILIGKMNKGRVVMELFADVTPKTAENFRALCTGEKGIGMSGKPLHYKGSTFH 61
           +NP VF DI +G    G+   ELF ++ PKT+ENFR  CTG     ++  P+ YK + FH
Sbjct: 15  SNPVVFMDINLGNNFLGKFKFELFQNIVPKTSENFRQFCTG--EYKVNNLPVGYKNTIFH 72

Query: 62  RIIPNFMCQGGDFTRGNGTGGESIYGMKFADENFKMKHTGPGILSMANAGPNTNGSQFFI 121
           R+I  FM QGGDF   NG+G  SIYG KF DENF +KH   G+LSMAN+GPNTNG QFFI
Sbjct: 73  RVIKEFMIQGGDFINHNGSGSLSIYGEKFDDENFDIKHDKEGLLSMANSGPNTNGCQFFI 132

Query: 122 CTQKTPWLDGKHVVFGKVVDGYS--VIKDMEKV--GSESGRTSQTVVIEDCGQL 171
            T+K  WLDGK+VVFG+++D  S  ++K +E V       +    + + +CG+L
Sbjct: 133 TTKKCEWLDGKNVVFGRIIDNDSLLLLKKIENVSVTPYIYKPKIPINVVECGEL 186

>d1h0pa_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Caenorhabditis elegans, isoform 5 [TaxId: 6239]} Length = 182

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Caenorhabditis elegans, isoform 5 [TaxId: 6239]

 Score =  154 bits (390), Expect = 5e-49
 Identities = 97/171 (56%), Positives = 116/171 (67%), Gaps = 8/171 (4%)

Query: 3   NPRVFFDILIGKMNKGRVVMELFADVTPKTAENFRALCTGEKGIGMSGKPLHYKGSTFHR 62
             RV+FD+ IG    GR+V+ LF    PKTA NF  L    KG G       Y GS FHR
Sbjct: 6   TDRVYFDMEIGGKPIGRIVIGLFGKTVPKTATNFIELAKKPKGEG-------YPGSKFHR 58

Query: 63  IIPNFMCQGGDFTRGNGTGGESIYGMKFADENFKMKHTGPGILSMANAGPNTNGSQFFIC 122
           +I +FM QGGDFTRG+GTGG SIYG KFADENFK+KH G G LSMANAG +TNGSQFFI 
Sbjct: 59  VIADFMIQGGDFTRGDGTGGRSIYGEKFADENFKLKHYGAGWLSMANAGADTNGSQFFIT 118

Query: 123 TQKTPWLDGKHVVFGKVVDGYSVIKDMEKVGSESG-RTSQTVVIEDCGQLA 172
           T KTPWLDG+HVVFGK+++G  V++ +E+     G R  Q V+I   G +A
Sbjct: 119 TVKTPWLDGRHVVFGKILEGMDVVRKIEQTEKLPGDRPKQDVIIAASGHIA 169

>d2rmca_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Mouse (Mus musculus), variant C [TaxId: 10090]} Length = 182

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Mouse (Mus musculus), variant C [TaxId: 10090]

 Score =  154 bits (389), Expect = 8e-49
 Identities = 95/171 (55%), Positives = 116/171 (67%), Gaps = 8/171 (4%)

Query: 2   TNPRVFFDILIGKMNKGRVVMELFADVTPKTAENFRALCTGEKGIGMSGKPLHYKGSTFH 61
              +VFFD+ IG  + GR+V+ LF +V PKT ENF AL TGEKG G       YKGS FH
Sbjct: 6   VTDKVFFDVRIGDKDVGRIVIGLFGNVVPKTVENFVALATGEKGYG-------YKGSIFH 58

Query: 62  RIIPNFMCQGGDFTRGNGTGGESIYGMKFADENFKMKHTGPGILSMANAGPNTNGSQFFI 121
           R+I +FM QGGDFT  +GTGG SIYG  F DENFK+KH G G +SMANAGP+TNGSQFFI
Sbjct: 59  RVIKDFMIQGGDFTARDGTGGMSIYGETFPDENFKLKHYGIGWVSMANAGPDTNGSQFFI 118

Query: 122 CTQKTPWLDGKHVVFGKVVDGYSVIKDMEKVGSES-GRTSQTVVIEDCGQL 171
              K  WLDGKHVVFGKV+DG +V+  +E   ++   R      I + G++
Sbjct: 119 TLTKPTWLDGKHVVFGKVLDGMTVVHSIELQATDGHDRPLTDCTIVNSGKI 169

>d1xo7a_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Trypanosoma cruzi [TaxId: 5693]} Length = 166

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Trypanosoma cruzi [TaxId: 5693]

 Score =  153 bits (387), Expect = 9e-49
 Identities = 95/171 (55%), Positives = 117/171 (68%), Gaps = 9/171 (5%)

Query: 2   TNPRVFFDILIGKMNKGRVVMELFADVTPKTAENFRALCTGEKGIGMSGKPLHYKGSTFH 61
              +V+FDI IG    GRVV+ LF +  PKT ENF+ L +GE G G       YKGS FH
Sbjct: 4   VTDKVYFDITIGDEPVGRVVIGLFGNDVPKTVENFKQLASGENGFG-------YKGSIFH 56

Query: 62  RIIPNFMCQGGDFTRGNGTGGESIYGMKFADENFKMKHTGPGILSMANAGPNTNGSQFFI 121
           R+I NFM QGGDFT  +GTGG+SIYG +F DEN K+KH   G +SMANAGPN+NGSQFF+
Sbjct: 57  RVIRNFMIQGGDFTNFDGTGGKSIYGTRFDDENLKIKHF-VGAVSMANAGPNSNGSQFFV 115

Query: 122 CTQKTPWLDGKHVVFGKVVDGYSVIKDMEKVGS-ESGRTSQTVVIEDCGQL 171
            T  TPWLDG+HVVFGKVV+G  V+K +E   +  + +  + V I DCG L
Sbjct: 116 TTAPTPWLDGRHVVFGKVVEGMDVVKKVENTKTGLNDKPKKAVKINDCGVL 166

>d1zkca1 b.62.1.1 (A:280-457) Peptidyl-prolyl cis-trans isomerase-like 2, Cyclophilin-60, PPI domain {Human (Homo sapiens) [TaxId: 9606]} Length = 178

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Peptidyl-prolyl cis-trans isomerase-like 2, Cyclophilin-60, PPI domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  146 bits (370), Expect = 6e-46
 Identities = 73/163 (44%), Positives = 95/163 (58%), Gaps = 14/163 (8%)

Query: 14  KMNKGRVVMELFADVTPKTAENFRALCTGEKGIGMSGKPLHYKGSTFHRIIPNFMCQGGD 73
             NKG + +EL  D+TPKT ENF  LC             +Y G+ FHR I NF+ QGGD
Sbjct: 6   HTNKGDLNLELHCDLTPKTCENFIRLCKKH----------YYDGTIFHRSIRNFVIQGGD 55

Query: 74  FTRGNGTGGESIYGMKFADE-NFKMKHTGPGILSMANAGPNTNGSQFFICTQKTPWLDGK 132
            T G GTGGES +G  F DE    + HTG GILSMAN+GPN+N SQFFI  +   +LD K
Sbjct: 56  PT-GTGTGGESYWGKPFKDEFRPNLSHTGRGILSMANSGPNSNRSQFFITFRSCAYLDKK 114

Query: 133 HVVFGKVVDGYSVIKDMEKV--GSESGRTSQTVVIEDCGQLAE 173
           H +FG+VV G+ V+  ME V    ++ R  + + I+      +
Sbjct: 115 HTIFGRVVGGFDVLTAMENVESDPKTDRPKEEIRIDATTVFVD 157

>d1xwna1 b.62.1.1 (A:1-166) Peptidyl-prolyl cis-trans isomerase-like 1, PPIL1 {Human (Homo sapiens) [TaxId: 9606]} Length = 166

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Peptidyl-prolyl cis-trans isomerase-like 1, PPIL1
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  139 bits (350), Expect = 4e-43
 Identities = 72/166 (43%), Positives = 94/166 (56%), Gaps = 18/166 (10%)

Query: 3   NPRVFFDILIGKMNKGRVVMELFADVTPKTAENFRALCTGEKGIGMSGKPLHYKGSTFHR 62
            P V+ +      + G +V+EL+    PKT +NF  L              +Y G+ FHR
Sbjct: 11  PPNVYLET-----SMGIIVLELYWKHAPKTCKNFAELARRG----------YYNGTKFHR 55

Query: 63  IIPNFMCQGGDFTRGNGTGGESIYGMKFADE-NFKMKHTGPGILSMANAGPNTNGSQFFI 121
           II +FM QGGD T G G GG SIYG +F DE +  +K TG GIL+MANAGP+TNGSQFF+
Sbjct: 56  IIKDFMIQGGDPT-GTGRGGASIYGKQFEDELHPDLKFTGAGILAMANAGPDTNGSQFFV 114

Query: 122 CTQKTPWLDGKHVVFGKVVDGYSVIKDMEKVGSES-GRTSQTVVIE 166
               T WLDGKH +FG+V  G  ++  +  V + S  R    V I 
Sbjct: 115 TLAPTQWLDGKHTIFGRVCQGIGMVNRVGMVETNSQDRPVDDVKII 160

>d1w74a_ b.62.1.1 (A:) Peptidyl-prolyl cis-trans isomerase A, PpiA {Mycobacterium tuberculosis [TaxId: 1773]} Length = 171

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Peptidyl-prolyl cis-trans isomerase A, PpiA
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score =  131 bits (329), Expect = 7e-40
 Identities = 61/163 (37%), Positives = 86/163 (52%), Gaps = 11/163 (6%)

Query: 14  KMNKGRVVMELFADVTPKTAENFRALCTGEKGIGMSG-----KPLHYKGSTFHRIIPNFM 68
             N+G + + LF +  PKT  NF  L  G K               Y G+ FHR+I  FM
Sbjct: 9   HTNRGDIKIALFGNHAPKTVANFVGLAQGTKDYSTQNASGGPSGPFYDGAVFHRVIQGFM 68

Query: 69  CQGGDFTRGNGTGGESIYGMKFADENFKMKHTGPGILSMANAGPNTNGSQFFICTQKTPW 128
            QGGD T G G GG         + + +++   P +L+MANAGP TNGSQFFI   KTP 
Sbjct: 69  IQGGDPT-GTGRGGP--GYKFADEFHPELQFDKPYLLAMANAGPGTNGSQFFITVGKTPH 125

Query: 129 LDGKHVVFGKVVD--GYSVIKDMEKVGSE-SGRTSQTVVIEDC 168
           L+ +H +FG+V+D     V++ + K  ++ + R +  VVIE  
Sbjct: 126 LNRRHTIFGEVIDAESQRVVEAISKTATDGNDRPTDPVVIESI 168

>d2ok3a1 b.62.1.1 (A:1-159) Cyclophilin-like protein PPIL3B {Human (Homo sapiens) [TaxId: 9606]} Length = 159

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin-like protein PPIL3B
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  127 bits (319), Expect = 1e-38
 Identities = 63/161 (39%), Positives = 83/161 (51%), Gaps = 12/161 (7%)

Query: 14  KMNKGRVVMELFADVTPKTAENFRALCTGEKGIGMSGKPLHYKGSTFHRIIPNFMCQGGD 73
             + G + +E+F + TPKT ENF ALC             +Y G  FHR I  FM Q GD
Sbjct: 6   HTDVGDIKIEVFCERTPKTCENFLALC----------ASNYYNGCIFHRNIKGFMVQTGD 55

Query: 74  FTRGNGTGGESIYGMKFADENFKMKHTGPGILSMANAGPNTNGSQFFICTQKTPWLDGKH 133
            T     G          + +  +KH   G++SMAN GPNTNGSQFFI   K P LD K+
Sbjct: 56  PTGTGRGGNSIWGKKFEDEYSEYLKHNVRGVVSMANNGPNTNGSQFFITYGKQPHLDMKY 115

Query: 134 VVFGKVVDGYSVIKDMEKV--GSESGRTSQTVVIEDCGQLA 172
            VFGKV+DG   + ++EK+    ++ R    V I+D    A
Sbjct: 116 TVFGKVIDGLETLDELEKLPVNEKTYRPLNDVHIKDITIHA 156

>d2a2na1 b.62.1.1 (A:483-646) Peptidylprolyl isomerase domain and WD repeat-containing protein 1, PPWD1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 164

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Peptidylprolyl isomerase domain and WD repeat-containing protein 1, PPWD1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  118 bits (297), Expect = 4e-35
 Identities = 62/168 (36%), Positives = 81/168 (48%), Gaps = 12/168 (7%)

Query: 3   NPRVFFDILIGKMNKGRVVMELFADVTPKTAENFRALCTGEKGIGMSGKPLHYKGSTFHR 62
            P+   D  I   + G +  +LF    PKT ENF              +  +Y G TFHR
Sbjct: 4   GPKRVSDSAIIHTSMGDIHTKLFPVECPKTVENFCVHS----------RNGYYNGHTFHR 53

Query: 63  IIPNFMCQGGDFTRGNGTGGESIYGMKFADENFKMKHTGPGILSMANAGPNTNGSQFFIC 122
           II  FM Q GD T     G     G    + +  ++H  P  LSMANAG NTNGSQFFI 
Sbjct: 54  IIKGFMIQTGDPTGTGMGGESIWGGEFEDEFHSTLRHDRPYTLSMANAGSNTNGSQFFIT 113

Query: 123 TQKTPWLDGKHVVFGKVVDGYSVIKDMEKV--GSESGRTSQTVVIEDC 168
              TPWLD KH VFG+V  G  V++ +  V    ++ +  + V I + 
Sbjct: 114 VVPTPWLDNKHTVFGRVTKGMEVVQRISNVKVNPKTDKPYEDVSIINI 161

>d2fu0a1 b.62.1.1 (A:5-159) Putative cyclophilin PFE0505w {Plasmodium falciparum [TaxId: 5833]} Length = 155

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Putative cyclophilin PFE0505w
species: Plasmodium falciparum [TaxId: 5833]

 Score =  106 bits (264), Expect = 3e-30
 Identities = 64/157 (40%), Positives = 86/157 (54%), Gaps = 13/157 (8%)

Query: 14  KMNKGRVVMELFADVTPKTAENFRALCTGEKGIGMSGKPLHYKGSTFHRIIPNFMCQGGD 73
               G + + LF     KT +NF                 +Y    FHR+I +FM Q GD
Sbjct: 7   YTTMGDIHISLFYKECKKTVQNFSVHSING----------YYNNCIFHRVIKHFMVQTGD 56

Query: 74  FTRGNGTGGESIYGMKFADENFKMKH-TGPGILSMANAGPNTNGSQFFICTQKTPWLDGK 132
            + G+GTGGESI+G +F DE F   + + P ++SMAN GPNTNGSQFFI T   PWLD K
Sbjct: 57  PS-GDGTGGESIWGNEFEDEFFDHLNHSKPFMVSMANCGPNTNGSQFFITTVPCPWLDFK 115

Query: 133 HVVFGKVVDGYSVIKDMEKVG-SESGRTSQTVVIEDC 168
           H VFGKV  G  ++ D+EKV   +  +  + + I + 
Sbjct: 116 HTVFGKVTQGSKIVLDIEKVRTDKRDKPLEDIKILNI 152

>d2b71a1 b.62.1.1 (A:23-191) Cyclophilin-like protein PY00693 {Plasmodium yoelii [TaxId: 5861]} Length = 169

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin-like protein PY00693
species: Plasmodium yoelii [TaxId: 5861]

 Score =  105 bits (263), Expect = 6e-30
 Identities = 56/158 (35%), Positives = 76/158 (48%), Gaps = 13/158 (8%)

Query: 14  KMNKGRVVMELFADVTPKTAENFRALCTGEKGIGMSGKPLHYKGSTFHRIIPNFMCQGGD 73
             N G   +EL+   +PKT  NF  LC              +  +T    +       G 
Sbjct: 22  YTNLGDFEVELYWYHSPKTCLNFYTLCEM-----------GFYDNTIFHRVIPNFVIQGG 70

Query: 74  FTRGNGTGGESIYGMKFADE-NFKMKHTGPGILSMANAGPNTNGSQFFICTQKTPWLDGK 132
              G G GG+SIYG  F DE N ++KHTG GILSM+N GPNTN SQFFI     P LDGK
Sbjct: 71  DPTGTGKGGKSIYGEYFEDEINKELKHTGAGILSMSNNGPNTNSSQFFITLAPLPHLDGK 130

Query: 133 HVVFGKVVDGYSVIKDMEKVG-SESGRTSQTVVIEDCG 169
           H +F +V    + I+++  V  + + +    + I    
Sbjct: 131 HTIFARVSKNMTCIENIASVQTTATNKPIFDLKILRTS 168

>d1lopa_ b.62.1.1 (A:) Peptidyl-prolyl cis-trans isomerase A, PpiA {Escherichia coli [TaxId: 562]} Length = 164

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Peptidyl-prolyl cis-trans isomerase A, PpiA
species: Escherichia coli [TaxId: 562]

 Score =  103 bits (257), Expect = 4e-29
 Identities = 41/172 (23%), Positives = 66/172 (38%), Gaps = 25/172 (14%)

Query: 10  ILIGKMNKGRVVMELFADVTPKTAENFRALCTGEKGIGMSGKPLHYKGSTFHRIIPNFMC 69
           ++    N G +V++ F D  P+T +NF   C          +   Y  + FHR+I  FM 
Sbjct: 1   MVTFHTNHGDIVIKTFDDKAPETVKNFLDYC----------REGFYNNTIFHRVINGFMI 50

Query: 70  QGGDFTRGNGTGGESIYGMKFADENFKMKHTGPGILSMANAGPNTNGSQFFICTQK---- 125
           QGG F  G      +       + N  +K+T   +       P++  +QFFI        
Sbjct: 51  QGGGFEPGMKQK--ATKEPIKNEANNGLKNTRGTLAMARTQAPHSATAQFFINVVDNDFL 108

Query: 126 ----TPWLDGKHVVFGKVVDGYSVIKDMEKV-----GSESGRTSQTVVIEDC 168
                      + VF +VVDG   +  ++ V     G       + V+IE  
Sbjct: 109 NFSGESLQGWGYCVFAEVVDGMDEVDKIKGVATGRSGMHQDVPKEDVIIESV 160

>d1v9ta_ b.62.1.1 (A:) Peptidyl-prolyl cis-trans isomerase A, PpiA {Escherichia coli [TaxId: 562]} Length = 166

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Peptidyl-prolyl cis-trans isomerase A, PpiA
species: Escherichia coli [TaxId: 562]

 Score = 99.6 bits (247), Expect = 1e-27
 Identities = 49/179 (27%), Positives = 67/179 (37%), Gaps = 27/179 (15%)

Query: 3   NPRVFFDILIGKMNKGRVVMELFADVTPKTAENFRALCTGEKGIGMSGKPLHYKGSTFHR 62
           +P V         + G + +EL     P + +NF                  Y  +TFHR
Sbjct: 4   DPHVLLTT-----SAGNIELELDKQKAPVSVQNFVDYVNSG----------FYNNTTFHR 48

Query: 63  IIPNFMCQGGDFTRGNGTGGESIYGMKFADENFKMKHTGPGILSMANAGPNTNGSQFFIC 122
           +IP FM QGG FT        +      AD     ++T   I     A  ++  SQFFI 
Sbjct: 49  VIPGFMIQGGGFTEQMQQKKPNPPIKNEADNGL--RNTRGTIAMARTADKDSATSQFFIN 106

Query: 123 TQKTPWLD-----GKHVVFGKVVDGYSVIKDMEKV-----GSESGRTSQTVVIEDCGQL 171
                +LD       + VFGKVV G  V   + +V     G      S+ VVI     L
Sbjct: 107 VADNAFLDHGQRDFGYAVFGKVVKGMDVADKISQVPTHDVGPYQNVPSKPVVILSATVL 165

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	174
d2igva1	172	Cyclophilin (eukaryotic) {Caenorhabditis elegans,	100.0
d2z6wa1	164	Mitochondrial peptidyl-prolyl cis-trans isomerase,	100.0
d1qnga_	170	Cyclophilin (eukaryotic) {Plasmodium falciparum [T	100.0
d2r99a1	161	Mitochondrial peptidyl-prolyl cis-trans isomerase,	100.0
d1ihga2	195	Cyclophilin 40 isomerase domain {Cow (Bos taurus)	100.0
d1a33a_	174	Cyclophilin (eukaryotic) {Nematode (Brugia malayi)	100.0
d2cfea1	162	Cyclophilin-like allergen Mal s 6 {Malassezia symp	100.0
d1qoia_	173	Cyclophilin (eukaryotic) {Human (Homo sapiens), U4	100.0
d1xo7a_	166	Cyclophilin (eukaryotic) {Trypanosoma cruzi [TaxId	100.0
d1z81a1	186	Cyclophilin (eukaryotic) {Plasmodium yoelii [TaxId	100.0
d2rmca_	182	Cyclophilin (eukaryotic) {Mouse (Mus musculus), va	100.0
d1h0pa_	182	Cyclophilin (eukaryotic) {Caenorhabditis elegans,	100.0
d2c3ba1	171	Cyclophilin (eukaryotic) {Aspergillus fumigatus [T	100.0
d2ok3a1	159	Cyclophilin-like protein PPIL3B {Human (Homo sapie	100.0
d1zkca1	178	Peptidyl-prolyl cis-trans isomerase-like 2, Cyclop	100.0
d1xwna1	166	Peptidyl-prolyl cis-trans isomerase-like 1, PPIL1	100.0
d2fu0a1	155	Putative cyclophilin PFE0505w {Plasmodium falcipar	100.0
d1v9ta_	166	Peptidyl-prolyl cis-trans isomerase A, PpiA {Esche	100.0
d2b71a1	169	Cyclophilin-like protein PY00693 {Plasmodium yoeli	100.0
d2a2na1	164	Peptidylprolyl isomerase domain and WD repeat-cont	100.0
d1w74a_	171	Peptidyl-prolyl cis-trans isomerase A, PpiA {Mycob	100.0
d1lopa_	164	Peptidyl-prolyl cis-trans isomerase A, PpiA {Esche	100.0
d1zx8a1	124	Hypothetical protein TM1367 {Thermotoga maritima [	89.67

>d2igva1 b.62.1.1 (A:1-172) Cyclophilin (eukaryotic) {Caenorhabditis elegans, isoform 3 [TaxId: 6239]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Caenorhabditis elegans, isoform 3 [TaxId: 6239]

Probab=100.00  E-value=7.6e-54  Score=321.61  Aligned_cols=172  Identities=74%  Similarity=1.258  Sum_probs=163.6

Q ss_pred             CCCCeEEEEEEECCEeceEEEEEEcCCCChHHHHHHHHHhcCCCCCCCCCccccccCCEEEEeecCceEeeCCCCCCCCC
Q 030603            1 MTNPRVFFDILIGKMNKGRVVMELFADVTPKTAENFRALCTGEKGIGMSGKPLHYKGSTFHRIIPNFMCQGGDFTRGNGT   80 (174)
Q Consensus         1 ~~~p~v~~di~~~~t~~G~i~i~L~~~~aP~~~~nF~~l~~~~~~~~~~g~~~~y~g~~f~ri~~~~~iq~G~~~~~~~~   80 (174)
                      |+||+||||+.++++++|+|+|+||.+.||++|+||++||++..+....++..+|+++.|||+++++++|+|+...+++.
T Consensus         1 ~~~~~v~~Di~i~~~~~G~i~ieL~~~~aP~tv~nF~~L~~~~~~~~~~~k~~~y~~~~f~rv~~~~~i~~G~~~~~~~~   80 (172)
T d2igva1           1 MSRSKVFFDITIGGKASGRIVMELYDDVVPKTAGNFRALCTGENGIGKSGKPLHFKGSKFHRIIPNFMIQGGDFTRGNGT   80 (172)
T ss_dssp             CCCCEEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHTTTCBCTTSSBSCCTTCBCCEEETTTEEEECCTTTSSSS
T ss_pred             CCCCEEEEEEEECCEeccEEEEEEcCCCCcHHHHHHHHHHhccccccccCcccccCCcceeEEEecceEEcCCccCCCCC
Confidence            89999999999999999999999999999999999999999887766677778899999999999999999999888888


Q ss_pred             CCCcccCCccCCCccCCCCCCCeEEEeeecCCCCCcceEEEEccCCCCCCCCceEEEEEEcChHHHHHHHhCCCCCCCcc
Q 030603           81 GGESIYGMKFADENFKMKHTGPGILSMANAGPNTNGSQFFICTQKTPWLDGKHVVFGKVVDGYSVIKDMEKVGSESGRTS  160 (174)
Q Consensus        81 ~~~~~~~~~~~~e~~~~~~~~~G~v~~~~~~~~~~~s~FfItl~~~~~ld~~~~vfG~V~~G~~vl~~I~~~~~~~~~P~  160 (174)
                      ++...++..+++|.....|+.+|+|||++.++++++|||||+++++|+||++|+|||+|++|||||++|++.+++.++|+
T Consensus        81 ~~~~~~~~~~~~e~~~~~~~~~G~lsma~~~~~~~~sqFfIt~~~~~~ld~~~~vFG~Vv~Gmdvl~~I~~~~~~~g~P~  160 (172)
T d2igva1          81 GGESIYGEKFPDENFKEKHTGPGVLSMANAGPNTNGSQFFLCTVKTEWLDGKHVVFGRVVEGLDVVKAVESNGSQSGKPV  160 (172)
T ss_dssp             CCCBTTBSCBCCCCCCSCCCSTTEEEECCSSTTCBSSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTTCCTTSCCS
T ss_pred             CCcccCCCccCccccccccCCCcEEEEeecCCCCcCceeEeeecCCcccCCceeEEEEEeccHHHHHHHHcCCCCCCCCC
Confidence            88888888899999999999999999999999999999999999999999999999999999999999999999889999


Q ss_pred             cceEEeEeeeec
Q 030603          161 QTVVIEDCGQLA  172 (174)
Q Consensus       161 ~~i~I~~~g~l~  172 (174)
                      ++|+|.+||+|+
T Consensus       161 ~~i~I~~cG~l~  172 (172)
T d2igva1         161 KDCMIADCGQLK  172 (172)
T ss_dssp             SCEEEEEEEEEC
T ss_pred             CCeEEEeccccC
Confidence            999999999985

>d2z6wa1 b.62.1.1 (A:2-165) Mitochondrial peptidyl-prolyl cis-trans isomerase, cyclophilin F {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Mitochondrial peptidyl-prolyl cis-trans isomerase, cyclophilin F
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.7e-51  Score=304.76  Aligned_cols=164  Identities=70%  Similarity=1.189  Sum_probs=153.5

Q ss_pred             CCCeEEEEEEECCEeceEEEEEEcCCCChHHHHHHHHHhcCCCCCCCCCccccccCCEEEEeecCceEeeCCCCCCCCCC
Q 030603            2 TNPRVFFDILIGKMNKGRVVMELFADVTPKTAENFRALCTGEKGIGMSGKPLHYKGSTFHRIIPNFMCQGGDFTRGNGTG   81 (174)
Q Consensus         2 ~~p~v~~di~~~~t~~G~i~i~L~~~~aP~~~~nF~~l~~~~~~~~~~g~~~~y~g~~f~ri~~~~~iq~G~~~~~~~~~   81 (174)
                      .||+|||||.++++.+|+|+||||++.||++|+||++||++++       ..+|+++.|||+++++++|+|+.....+.+
T Consensus         1 ~n~~v~~Di~i~~~~~G~i~ieL~~~~aP~tv~nF~~l~~~~~-------~~~Y~g~~f~rv~~~~~iq~g~~~~~~~~~   73 (164)
T d2z6wa1           1 GNPLVYLDVDANGKPLGRVVLELKADVVPKTAENFRALCTGEK-------GFGYKGSTFHRVIPSFMCQAGDFTNHNGTG   73 (164)
T ss_dssp             CCCEEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHTTT-------SCCSTTCBEEEEETTTEEEECCTTTSSSSC
T ss_pred             CCCeEEEEEEECCEeceEEEEEECCCcCcHHHHHHHHHHhcCC-------CcccCCcEEEEecccceEecCCccCCCCCC
Confidence            4999999999999999999999999999999999999996553       345999999999999999999988777777


Q ss_pred             CCcccCCccCCCccCCCCCCCeEEEeeecCCCCCcceEEEEccCCCCCCCCceEEEEEEcChHHHHHHHhCCCCCCCccc
Q 030603           82 GESIYGMKFADENFKMKHTGPGILSMANAGPNTNGSQFFICTQKTPWLDGKHVVFGKVVDGYSVIKDMEKVGSESGRTSQ  161 (174)
Q Consensus        82 ~~~~~~~~~~~e~~~~~~~~~G~v~~~~~~~~~~~s~FfItl~~~~~ld~~~~vfG~V~~G~~vl~~I~~~~~~~~~P~~  161 (174)
                      +...++..++++.....|+.+|+|||++.++++++|||||++.+.|+||++|+|||+|++|||||++|++++++.++|.+
T Consensus        74 ~~~~~~~~~~~~~~~~~~~~~G~lsma~~~~~s~~sqFfi~~~~~~~ldg~ytVFG~Vv~G~dvl~~I~~~~~~~~~P~~  153 (164)
T d2z6wa1          74 GKSIYGSRFPDENFTLKHVGPGVLSMANAGPNTNGSQFFICTIKTDWLDGKHVVFGHVIEGMDVVKKIESFGSKSGRTSK  153 (164)
T ss_dssp             CCBTTBSCBCCCCCCSCCCSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHHTCCTTSCCSS
T ss_pred             CccccCCcCCccccccccCCccEEEEecCCCCCCCcceeccccCCCcccccceEEEEecccHHHHHHHHhCCCCCCCCCC
Confidence            77888888888888899999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ceEEeEeeeec
Q 030603          162 TVVIEDCGQLA  172 (174)
Q Consensus       162 ~i~I~~~g~l~  172 (174)
                      +|+|.+||+|+
T Consensus       154 ~i~I~~cG~l~  164 (164)
T d2z6wa1         154 KIVITDCGQLS  164 (164)
T ss_dssp             CEEEEEEEECC
T ss_pred             CEEEEeCeecC
Confidence            99999999985

>d1qnga_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Plasmodium falciparum [TaxId: 5833]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Plasmodium falciparum [TaxId: 5833]

Probab=100.00  E-value=3.5e-51  Score=306.47  Aligned_cols=169  Identities=66%  Similarity=1.157  Sum_probs=156.7

Q ss_pred             CCCeEEEEEEECCEeceEEEEEEcCCCChHHHHHHHHHhcCCCCCCCCCccccccCCEEEEeecCceEeeCCCCCCCCCC
Q 030603            2 TNPRVFFDILIGKMNKGRVVMELFADVTPKTAENFRALCTGEKGIGMSGKPLHYKGSTFHRIIPNFMCQGGDFTRGNGTG   81 (174)
Q Consensus         2 ~~p~v~~di~~~~t~~G~i~i~L~~~~aP~~~~nF~~l~~~~~~~~~~g~~~~y~g~~f~ri~~~~~iq~G~~~~~~~~~   81 (174)
                      +||+|||||++++|+.|+|+|+||++.||++|+||++||++.+.. ..++..+|+++.|||+++++++|+|+...+++.+
T Consensus         2 ~r~~vy~Di~i~~t~~G~ivIeL~~~~aP~tv~nF~~l~~~~~~~-~~~~~~~y~g~~~~rv~~~~~iq~g~~~~~~~~~   80 (170)
T d1qnga_           2 KRSKVFFDISIDNSNAGRIIFELFSDITPRTCENFRALCTGEKIG-SRGKNLHYKNSIFHRIIPQFMCQGGDITNGNGSG   80 (170)
T ss_dssp             CSCEEEEEEEESSSEEEEEEEEECTTTCHHHHHHHHHHHHTCEEC-TTSSEECCTTCBCCEEETTTEEEECCTTTSSSSC
T ss_pred             CCCEEEEEEEECCEEccEEEEEECCCCChHHHHHHHhhhcccccc-ccCccCccCcccceEEEeCceEEecCccCCCCCC
Confidence            589999999999999999999999999999999999999876533 2345567999999999999999999988777777


Q ss_pred             CCcccCCccCCCccCCCCCCCeEEEeeecCCCCCcceEEEEccCCCCCCCCceEEEEEEcChHHHHHHHhCCCCCCCccc
Q 030603           82 GESIYGMKFADENFKMKHTGPGILSMANAGPNTNGSQFFICTQKTPWLDGKHVVFGKVVDGYSVIKDMEKVGSESGRTSQ  161 (174)
Q Consensus        82 ~~~~~~~~~~~e~~~~~~~~~G~v~~~~~~~~~~~s~FfItl~~~~~ld~~~~vfG~V~~G~~vl~~I~~~~~~~~~P~~  161 (174)
                      +...++..+.++...+.|+.+|+|+|++.++++++|||||+++++|+||++|+|||+|++|||||++|++.++++++|.+
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~G~lsma~~~~~s~~sqFfIt~~~~~~Ld~~~~vFG~Vv~Gmdvl~~I~~~~~~~g~P~~  160 (170)
T d1qnga_          81 GESIYGRSFTDENFNMKHDQPGLLSMANAGPNTNSSQFFITLVPCPWLDGKHVVFGKVIEGMNVVREMEKEGAKSGYVKR  160 (170)
T ss_dssp             CCBTTBSCBCCCCCCSCCCSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTTCCTTCCCSS
T ss_pred             CcccCCCccccccccccCCCCeEEEEeecCCCCccccceeccCCcccccccccEEeEEeccHHHHHHHHhcCCCCcCCcc
Confidence            77777888888889999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ceEEeEeeee
Q 030603          162 TVVIEDCGQL  171 (174)
Q Consensus       162 ~i~I~~~g~l  171 (174)
                      +|+|++||+|
T Consensus       161 ~i~I~~CG~l  170 (170)
T d1qnga_         161 SVVITDCGEL  170 (170)
T ss_dssp             CEEEEEEEEC
T ss_pred             CEEEEeeEcC
Confidence            9999999987

>d2r99a1 b.62.1.1 (A:139-299) Mitochondrial peptidyl-prolyl cis-trans isomerase, cyclophilin F {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Mitochondrial peptidyl-prolyl cis-trans isomerase, cyclophilin F
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.9e-50  Score=300.05  Aligned_cols=161  Identities=65%  Similarity=1.131  Sum_probs=150.6

Q ss_pred             CCeEEEEEEECCEeceEEEEEEcCCCChHHHHHHHHHhcCCCCCCCCCccccccCCEEEEeecCceEeeCCCCCCCCCCC
Q 030603            3 NPRVFFDILIGKMNKGRVVMELFADVTPKTAENFRALCTGEKGIGMSGKPLHYKGSTFHRIIPNFMCQGGDFTRGNGTGG   82 (174)
Q Consensus         3 ~p~v~~di~~~~t~~G~i~i~L~~~~aP~~~~nF~~l~~~~~~~~~~g~~~~y~g~~f~ri~~~~~iq~G~~~~~~~~~~   82 (174)
                      ||+|||||.++++..|+|+|+||.+.||++|+||++||++.+    .|   +|+++.|||++|++++|+|+.....+.++
T Consensus         1 np~vy~di~i~~~~~G~i~ieL~~~~aP~tv~nF~~L~~~~~----~~---~Y~g~~f~Rv~~~~~iq~G~~~~~~~~~~   73 (161)
T d2r99a1           1 NPQVYMDIKIGNKPAGRIQMLLRSDVVPMTAENFRCLCTHEK----GF---GFKGSSFHRIIPQFMCQGGDFTNHNGTGG   73 (161)
T ss_dssp             CCEEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHTTT----SC---CSTTCBEEEEETTTEEEECCTTTSSSSCC
T ss_pred             CCEEEEEEEECCEeceEEEEEEcCCCCcHHHHHHHHhhhhcc----cc---ccCCcEEEEEEEeeeEEeeeccCCCCCCC
Confidence            899999999999999999999999999999999999997653    22   49999999999999999999987777777


Q ss_pred             CcccCCccCCCccCCCCCCCeEEEeeecCCCCCcceEEEEccCCCCCCCCceEEEEEEcChHHHHHHHhCCCCCCCcccc
Q 030603           83 ESIYGMKFADENFKMKHTGPGILSMANAGPNTNGSQFFICTQKTPWLDGKHVVFGKVVDGYSVIKDMEKVGSESGRTSQT  162 (174)
Q Consensus        83 ~~~~~~~~~~e~~~~~~~~~G~v~~~~~~~~~~~s~FfItl~~~~~ld~~~~vfG~V~~G~~vl~~I~~~~~~~~~P~~~  162 (174)
                      ...++....++....+|+.+|+++|++.++++++|||||+++++|+||++|+|||||++|||||++|+..++++++|.++
T Consensus        74 ~~~~~~~~~~~~~~~~~~~~G~ls~~~~~~~s~~sqFfI~~~~~~~Ldg~~tvFG~Vv~G~dvl~~I~~~~~~~~~P~~~  153 (161)
T d2r99a1          74 KSIYGKKFDDENFILKHTGPGLLSMANSGPNTNGSQFFLTCDKTDWLDGKHVVFGEVTEGLDVLRQIEAQGSKDGKPKQK  153 (161)
T ss_dssp             CBTTBSCBCCCCCCSCCCSSSEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTTCCTTCCCSSC
T ss_pred             ccccCccccccccccccccceeeeecccCCCCcCcceEeccCCccccCCcceEEEEEeehHHHHHHHHccCCCCCcCCCC
Confidence            77778778888889999999999999999999999999999999999999999999999999999999998888999999


Q ss_pred             eEEeEeee
Q 030603          163 VVIEDCGQ  170 (174)
Q Consensus       163 i~I~~~g~  170 (174)
                      |+|++||+
T Consensus       154 i~I~~CGe  161 (161)
T d2r99a1         154 VIIADCGE  161 (161)
T ss_dssp             EEEEEEEE
T ss_pred             EEEEeCCC
Confidence            99999996

>d1ihga2 b.62.1.1 (A:2-196) Cyclophilin 40 isomerase domain {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin 40 isomerase domain
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=5.3e-50  Score=306.09  Aligned_cols=172  Identities=66%  Similarity=1.097  Sum_probs=158.7

Q ss_pred             CCCeEEEEEEECCEeceEEEEEEcCCCChHHHHHHHHHhcCCCCCC-CCCccccccCCEEEEeecCceEeeCCCCCCCCC
Q 030603            2 TNPRVFFDILIGKMNKGRVVMELFADVTPKTAENFRALCTGEKGIG-MSGKPLHYKGSTFHRIIPNFMCQGGDFTRGNGT   80 (174)
Q Consensus         2 ~~p~v~~di~~~~t~~G~i~i~L~~~~aP~~~~nF~~l~~~~~~~~-~~g~~~~y~g~~f~ri~~~~~iq~G~~~~~~~~   80 (174)
                      +||+||||+.++++.+|+|+|+||.+.||++|+||++||+++.+.. ..++..+|+|+.|||+++++++|+|+.....+.
T Consensus        13 ~np~v~~Di~i~~~~~G~I~IeL~~d~aP~tv~nF~~L~~~~~~~~~~~~~~~~y~g~~f~rv~~~~~i~~G~~~~~~~~   92 (195)
T d1ihga2          13 SNPRVFFDVDIGGERVGRIVLELFADIVPKTAENFRALCTGEKGIGPTTGKPLHFKGCPFHRIIKKFMIQGGDFSNQNGT   92 (195)
T ss_dssp             TSCEEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHCTTCBCTTTSSBSCCTTCBEEEEETTTEEEECCTTTSSSS
T ss_pred             CCCEEEEEEEECCEeeeEEEEEECCCCChHHHHHHHHHhccccccccccCCccccCCceeeEEEcCceeecCCccCCCCC
Confidence            4899999999999999999999999999999999999998765432 344556799999999999999999998877777


Q ss_pred             CCCcccCCccCCCccCCCCCCCeEEEeeecCCCCCcceEEEEccCCCCCCCCceEEEEEEcChHHHHHHHhCCCCCCCcc
Q 030603           81 GGESIYGMKFADENFKMKHTGPGILSMANAGPNTNGSQFFICTQKTPWLDGKHVVFGKVVDGYSVIKDMEKVGSESGRTS  160 (174)
Q Consensus        81 ~~~~~~~~~~~~e~~~~~~~~~G~v~~~~~~~~~~~s~FfItl~~~~~ld~~~~vfG~V~~G~~vl~~I~~~~~~~~~P~  160 (174)
                      ++....+..+.++.....|+.+|+|+|++.++++++|||||+|+++|+||++|+|||+|++|||||++|+++++++++|.
T Consensus        93 ~~~~~~~~~~~~~~~~~~h~~~G~lsm~~~~~~s~~SqFfItl~~~~~LDg~ytVFG~Vv~Gmdvl~~I~~~~t~~~~P~  172 (195)
T d1ihga2          93 GGESIYGEKFEDENFHYKHDKEGLLSMANAGSNTNGSQFFITTVPTPHLDGKHVVFGQVIKGMGVAKILENVEVKGEKPA  172 (195)
T ss_dssp             CCCBTTBSCBCCCCCCBCCCSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTSCEETTEES
T ss_pred             CCccCCCCcccccccCcccCcceEEeeeecCCCCCCceeEeeccCCcccCCcceEEEEEecCHHHHHHHHcCCCCCCCcC
Confidence            77777888888999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cceEEeEeeeecc
Q 030603          161 QTVVIEDCGQLAE  173 (174)
Q Consensus       161 ~~i~I~~~g~l~~  173 (174)
                      ++|+|.+||+|.+
T Consensus       173 ~~i~I~~cG~l~~  185 (195)
T d1ihga2         173 KLCVIAECGELKE  185 (195)
T ss_dssp             SCEEEEEEEEECT
T ss_pred             CCeEEEECcccCC
Confidence            9999999999975

>d1a33a_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Nematode (Brugia malayi) [TaxId: 6279]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Nematode (Brugia malayi) [TaxId: 6279]

Probab=100.00  E-value=3.1e-49  Score=296.76  Aligned_cols=171  Identities=59%  Similarity=0.997  Sum_probs=156.1

Q ss_pred             CCCeEEEEEEECCEeceEEEEEEcCCCChHHHHHHHHHhcCCCCCC-CCCccccccCCEEEEeecCceEeeCCCCCCCCC
Q 030603            2 TNPRVFFDILIGKMNKGRVVMELFADVTPKTAENFRALCTGEKGIG-MSGKPLHYKGSTFHRIIPNFMCQGGDFTRGNGT   80 (174)
Q Consensus         2 ~~p~v~~di~~~~t~~G~i~i~L~~~~aP~~~~nF~~l~~~~~~~~-~~g~~~~y~g~~f~ri~~~~~iq~G~~~~~~~~   80 (174)
                      .|++||||+.++++..|+|+|+||++.||++|+||++||++.++.+ ..++..+|+++.|||+++++++|+|+...+++.
T Consensus         2 ~~~~v~~di~i~~~~~G~I~ieL~~d~aP~tv~nF~~l~~~~~~~~~~~~k~~~Y~~~~f~Rv~~~~~iq~g~~~~~~~~   81 (174)
T d1a33a_           2 DRRRVFLDVTIDGNLAGRIVMELYNDIAPRTCNNFLMLCTGMAGTGKISGKPLHYKGSTFHRVIKNFMIQGGDFTKGDGT   81 (174)
T ss_dssp             CCEEEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHCTTCBCTTTCSBCCCTTCBEEEEETTTEEEECCTTTSSSS
T ss_pred             CCCEEEEEEEECCEeceEEEEEECCCCChHHHHHHHHHHhcccCCCcccCccceeCCceeeEEEeCCEEeeCCCCCCCCC
Confidence            4899999999999999999999999999999999999999876543 234556799999999999999999998877777


Q ss_pred             CCCcccCCccCCCccCCCCCCCeEEEeeecCCCCCcceEEEEccCCCCCCCCceEEEEEEcChHHHHHHHhCCCCC-CCc
Q 030603           81 GGESIYGMKFADENFKMKHTGPGILSMANAGPNTNGSQFFICTQKTPWLDGKHVVFGKVVDGYSVIKDMEKVGSES-GRT  159 (174)
Q Consensus        81 ~~~~~~~~~~~~e~~~~~~~~~G~v~~~~~~~~~~~s~FfItl~~~~~ld~~~~vfG~V~~G~~vl~~I~~~~~~~-~~P  159 (174)
                      ++.+.+.....++....+|+.+|+++|++.++++++|||||++++.|+||++|+|||+|++|||||++|++++++. ++|
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~s~~sqFfI~~~~~p~ld~~~~vFG~VveG~dvl~~I~~~~t~~~~~P  161 (174)
T d1a33a_          82 GGESIYGGMFDDEEFVMKHDEPFVVSMANKGPNTNGSQFFITTTPAPHLNNIHVVFGKVVSGQEVVTKIEYLKTNSKNRP  161 (174)
T ss_dssp             CCCCTTSSCBCCCCSCSCCCSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTSCBCTTSCB
T ss_pred             CCCCccCccccccccccccCcceeeeeeccCCCCCCcccccccCCcccccccceeEEEEechHHHHHHHHhCCcCCCCCC
Confidence            7777777777778889999999999999999999999999999999999999999999999999999999999987 999


Q ss_pred             ccceEEeEeeeec
Q 030603          160 SQTVVIEDCGQLA  172 (174)
Q Consensus       160 ~~~i~I~~~g~l~  172 (174)
                      .++|+|.+||+|.
T Consensus       162 ~~~i~I~~cGel~  174 (174)
T d1a33a_         162 LADVVILNCGELV  174 (174)
T ss_dssp             SSCEEEEEEEECC
T ss_pred             CCCEEEEeeEEEC
Confidence            9999999999984

>d2cfea1 b.62.1.1 (A:1-162) Cyclophilin-like allergen Mal s 6 {Malassezia sympodialis [TaxId: 76777]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin-like allergen Mal s 6
species: Malassezia sympodialis [TaxId: 76777]

Probab=100.00  E-value=8.3e-49  Score=291.44  Aligned_cols=159  Identities=65%  Similarity=1.115  Sum_probs=149.5

Q ss_pred             eEEEEEEECCEeceEEEEEEcCCCChHHHHHHHHHhcCCCCCCCCCccccccCCEEEEeecCceEeeCCCCCCCCCCCCc
Q 030603            5 RVFFDILIGKMNKGRVVMELFADVTPKTAENFRALCTGEKGIGMSGKPLHYKGSTFHRIIPNFMCQGGDFTRGNGTGGES   84 (174)
Q Consensus         5 ~v~~di~~~~t~~G~i~i~L~~~~aP~~~~nF~~l~~~~~~~~~~g~~~~y~g~~f~ri~~~~~iq~G~~~~~~~~~~~~   84 (174)
                      +||||+.++++++|+|+||||++.||++|+||++||+++.+.       +|+++.|||++|++++|+|++..+++.++..
T Consensus         3 ~V~fDi~i~~~~~G~i~ieL~~~~aP~tv~nF~~L~~~~~~~-------~Y~g~~f~rv~~~~~iq~G~~~~~~~~~~~~   75 (162)
T d2cfea1           3 NVFFDITKNGAPLGTIKFKLFDDVVPKTAANFRALCTGEKGF-------GYAGSHFHRVIPDFMLQGGDFTAGNGTGGKS   75 (162)
T ss_dssp             CEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHTTTSC-------CSTTCBCCEEETTTEEEECCTTTSSSSCCCB
T ss_pred             eEEEEEEECCEEeeEEEEEEcCCCChHHHHHHHHHHhhccCC-------ccCCCEEEEEEecceEecCCCCCCCCCCCcc
Confidence            589999999999999999999999999999999999776543       4999999999999999999998777777777


Q ss_pred             ccCCccCCCccCCCCCCCeEEEeeecCCCCCcceEEEEccCCCCCCCCceEEEEEEcChHHHHHHHhCCCCCCCcccceE
Q 030603           85 IYGMKFADENFKMKHTGPGILSMANAGPNTNGSQFFICTQKTPWLDGKHVVFGKVVDGYSVIKDMEKVGSESGRTSQTVV  164 (174)
Q Consensus        85 ~~~~~~~~e~~~~~~~~~G~v~~~~~~~~~~~s~FfItl~~~~~ld~~~~vfG~V~~G~~vl~~I~~~~~~~~~P~~~i~  164 (174)
                      .+...+.+|...++|+.+|+|+|++.++++++|||||++++.|+||++|+|||+|++|||||++|++.++++++|.++|+
T Consensus        76 ~~~~~~~~e~~~~~h~~~G~vsm~~~~~~s~~sqF~I~~~~~~~ld~~~~vFG~Vi~G~dvl~~I~~~~~~~~~P~~~i~  155 (162)
T d2cfea1          76 IYGAKFADENFQLKHNKPGLLSMANAGPNTNGSQFFITTVVTSWLDGKHVVFGEVIDGMNVVKAIEAEGSGSGKPRSRIE  155 (162)
T ss_dssp             TTBSCBCCCCCCSCCCSTTEEEECCSSTTCBSSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTTCCTTSCCSSCEE
T ss_pred             cCCCccccccCCCCCCCceEEEEeecCCCCCCcceEEeecCCccccccceEEEEEEehHHHHHHHhcCCCCCCCCCCCeE
Confidence            77888888988999999999999999999999999999999999999999999999999999999998888899999999


Q ss_pred             EeEeee
Q 030603          165 IEDCGQ  170 (174)
Q Consensus       165 I~~~g~  170 (174)
                      |.+|||
T Consensus       156 I~~cgv  161 (162)
T d2cfea1         156 IAKCGV  161 (162)
T ss_dssp             EEEEEE
T ss_pred             EEeeEc
Confidence            999997

>d1qoia_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Human (Homo sapiens), U4/U6 snRNP-specific cyclophilin snucyp-20 [TaxId: 9606]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Human (Homo sapiens), U4/U6 snRNP-specific cyclophilin snucyp-20 [TaxId: 9606]

Probab=100.00  E-value=9.2e-49  Score=293.93  Aligned_cols=168  Identities=59%  Similarity=1.047  Sum_probs=150.0

Q ss_pred             CCCeEEEEEEECCEeceEEEEEEcCCCChHHHHHHHHHhcCCCCCCCCCccccccCCEEEEeecCceEeeCCCCCCCCCC
Q 030603            2 TNPRVFFDILIGKMNKGRVVMELFADVTPKTAENFRALCTGEKGIGMSGKPLHYKGSTFHRIIPNFMCQGGDFTRGNGTG   81 (174)
Q Consensus         2 ~~p~v~~di~~~~t~~G~i~i~L~~~~aP~~~~nF~~l~~~~~~~~~~g~~~~y~g~~f~ri~~~~~iq~G~~~~~~~~~   81 (174)
                      .||+||||+.++++.+|+|+|+||.+.||++|+||++||+.+..  ..++...|+++.|||+++++++|+|+...+.+..
T Consensus         5 ~np~v~~di~i~~~~~G~i~ieL~~~~aP~tv~nF~~L~~~~~~--~~~~~~~y~~~~f~rv~~~~~~q~G~~~~~~~~~   82 (173)
T d1qoia_           5 VNPVVFFDVSIGGQEVGRMKIELFADVVPKTAENFRQFCTGEFR--KDGVPIGYKGSTFHRVIKDFMIQGGDFVNGDGTG   82 (173)
T ss_dssp             CCCEEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHSCCE--ETTEECSSTTCBCCEEETTTEEEECCTTTSSSCC
T ss_pred             CCCEEEEEEEECCEeCeEEEEEEcCCCCcHHHHHHHHhhccccc--ccCCCCCcCCcccceeccceeeccCCcccCCcce
Confidence            49999999999999999999999999999999999999975421  1122223999999999999999999987666555


Q ss_pred             CCcccCCccCCCccCCCCCCCeEEEeeecCCCCCcceEEEEccCCCCCCCCceEEEEEEcChHHHHHHHhCCCCC-CCcc
Q 030603           82 GESIYGMKFADENFKMKHTGPGILSMANAGPNTNGSQFFICTQKTPWLDGKHVVFGKVVDGYSVIKDMEKVGSES-GRTS  160 (174)
Q Consensus        82 ~~~~~~~~~~~e~~~~~~~~~G~v~~~~~~~~~~~s~FfItl~~~~~ld~~~~vfG~V~~G~~vl~~I~~~~~~~-~~P~  160 (174)
                      .......++.++.....|+.+|+|+|++.++++++|||||++++.|+||++|+|||+|++|||+|++|++++++. ++|.
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~G~l~ma~~~~~s~~sqFfI~~~~~~~ldg~~tvFG~Vi~G~dvl~~I~~~~t~~~~~P~  162 (173)
T d1qoia_          83 VASIYRGPFADENFKLRHSAPGLLSMANSGPSTNGCQFFITCSKCDWLDGKHVVFGKIIDGLLVMRKIENVPTGPNNKPK  162 (173)
T ss_dssp             CCCTTSSCBCCCCCCSCCCSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTSCBCGGGCBS
T ss_pred             eecccCCcccccccccccCCCcEEEeeecCCCCCCceeeeeccCCccCCcceeEEEEEechHHHHHHHHhCCcCCCCcCC
Confidence            555566777778888889999999999999999999999999999999999999999999999999999999977 9999


Q ss_pred             cceEEeEeeee
Q 030603          161 QTVVIEDCGQL  171 (174)
Q Consensus       161 ~~i~I~~~g~l  171 (174)
                      ++|+|.+||+|
T Consensus       163 ~~i~I~~cGel  173 (173)
T d1qoia_         163 LPVVISQCGEM  173 (173)
T ss_dssp             SCEEEEEEEEC
T ss_pred             CCEEEEcccCC
Confidence            99999999987

>d1xo7a_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Trypanosoma cruzi [TaxId: 5693]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=100.00  E-value=2.5e-48  Score=289.85  Aligned_cols=161  Identities=57%  Similarity=0.977  Sum_probs=145.4

Q ss_pred             CCeEEEEEEECCEeceEEEEEEcCCCChHHHHHHHHHhcCCCCCCCCCccccccCCEEEEeecCceEeeCCCCCCCCCCC
Q 030603            3 NPRVFFDILIGKMNKGRVVMELFADVTPKTAENFRALCTGEKGIGMSGKPLHYKGSTFHRIIPNFMCQGGDFTRGNGTGG   82 (174)
Q Consensus         3 ~p~v~~di~~~~t~~G~i~i~L~~~~aP~~~~nF~~l~~~~~~~~~~g~~~~y~g~~f~ri~~~~~iq~G~~~~~~~~~~   82 (174)
                      +++|||||.+++++.|+|+||||.+.||++|+||++||+++.+.       +|+++.|||++|++++|+|+....++.++
T Consensus         5 t~~V~~di~i~~~~~G~i~ieL~~~~aP~t~~nF~~l~~~~~~~-------~Y~g~~f~rv~~~~~iq~G~~~~~~~~~~   77 (166)
T d1xo7a_           5 TDKVYFDITIGDEPVGRVVIGLFGNDVPKTVENFKQLASGENGF-------GYKGSIFHRVIRNFMIQGGDFTNFDGTGG   77 (166)
T ss_dssp             CEEEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHTTTSC-------CSTTCBEEEEETTTEEEECCTTTSSSSCC
T ss_pred             CCeEEEEEEECCEECcEEEEEECCCCChHHHHHHHHhhcccccc-------cccCcEEEEEcCCCEEEeCCCCCCCCCCC
Confidence            67899999999999999999999999999999999999876543       39999999999999999999887777776


Q ss_pred             CcccCCccCCCccCCCCCCCeEEEeeecCCCCCcceEEEEccCCCCCCCCceEEEEEEcChHHHHHHHhCCCCC-CCccc
Q 030603           83 ESIYGMKFADENFKMKHTGPGILSMANAGPNTNGSQFFICTQKTPWLDGKHVVFGKVVDGYSVIKDMEKVGSES-GRTSQ  161 (174)
Q Consensus        83 ~~~~~~~~~~e~~~~~~~~~G~v~~~~~~~~~~~s~FfItl~~~~~ld~~~~vfG~V~~G~~vl~~I~~~~~~~-~~P~~  161 (174)
                      ...++....++.. ..++.+|+|+|++.++++++|||||+++++|+||++|+|||+|++||++|++|++++++. ++|.+
T Consensus        78 ~~~~~~~~~~~~~-~~~~~~G~l~~a~~g~~s~~sqFfIt~~~~~~ld~~~~vfG~Vi~G~~vl~~I~~~~~~~~~~P~~  156 (166)
T d1xo7a_          78 KSIYGTRFDDENL-KIKHFVGAVSMANAGPNSNGSQFFVTTAPTPWLDGRHVVFGKVVEGMDVVKKVENTKTGLNDKPKK  156 (166)
T ss_dssp             CBTTBSCBCCCCC-CSCCCTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTSCBCGGGCBSS
T ss_pred             CCCCCcccccccc-cccccccceeecccCCCCCCCeeEEccCCccccCccceeeeEEeeHHHHHHHHHcCCCCCCCCCCC
Confidence            6666555555544 556679999999999999999999999999999999999999999999999999999877 99999


Q ss_pred             ceEEeEeeee
Q 030603          162 TVVIEDCGQL  171 (174)
Q Consensus       162 ~i~I~~~g~l  171 (174)
                      +|+|.+||+|
T Consensus       157 ~i~I~~cgvl  166 (166)
T d1xo7a_         157 AVKINDCGVL  166 (166)
T ss_dssp             CEEEEEEEEC
T ss_pred             CEEEEeeEeC
Confidence            9999999997

>d1z81a1 b.62.1.1 (A:25-210) Cyclophilin (eukaryotic) {Plasmodium yoelii [TaxId: 5861]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Plasmodium yoelii [TaxId: 5861]

Probab=100.00  E-value=1.9e-48  Score=295.40  Aligned_cols=168  Identities=51%  Similarity=0.931  Sum_probs=154.0

Q ss_pred             CCCeEEEEEEECCEeceEEEEEEcCCCChHHHHHHHHHhcCCCCCCCCCccccccCCEEEEeecCceEeeCCCCCCCCCC
Q 030603            2 TNPRVFFDILIGKMNKGRVVMELFADVTPKTAENFRALCTGEKGIGMSGKPLHYKGSTFHRIIPNFMCQGGDFTRGNGTG   81 (174)
Q Consensus         2 ~~p~v~~di~~~~t~~G~i~i~L~~~~aP~~~~nF~~l~~~~~~~~~~g~~~~y~g~~f~ri~~~~~iq~G~~~~~~~~~   81 (174)
                      +||+||||+.++++..|+|+||||.+.||++|+||++||+++.+.  .++...|+|+.|||+++++++|+|+.....+..
T Consensus        15 ~np~V~~di~i~~~~~G~I~ieL~~d~aP~tv~nF~~L~~~~~~~--~~~~~~Y~g~~f~rv~~~~~i~~G~~~~~~~~~   92 (186)
T d1z81a1          15 SNPVVFMDINLGNNFLGKFKFELFQNIVPKTSENFRQFCTGEYKV--NNLPVGYKNTIFHRVIKEFMIQGGDFINHNGSG   92 (186)
T ss_dssp             TCCEEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHTCCBS--SSSBCSSTTEECCEEETTTEEEECCTTTSSSCC
T ss_pred             CCCEEEEEEEECCEeceEEEEEEcCCCChHHHHHHHHHHhccccc--CCcccccCCCeeeeeecceeeecCCccccCCcc
Confidence            389999999999999999999999999999999999999886532  233345999999999999999999987777777


Q ss_pred             CCcccCCccCCCccCCCCCCCeEEEeeecCCCCCcceEEEEccCCCCCCCCceEEEEEEcC--hHHHHHHHhCCCCC--C
Q 030603           82 GESIYGMKFADENFKMKHTGPGILSMANAGPNTNGSQFFICTQKTPWLDGKHVVFGKVVDG--YSVIKDMEKVGSES--G  157 (174)
Q Consensus        82 ~~~~~~~~~~~e~~~~~~~~~G~v~~~~~~~~~~~s~FfItl~~~~~ld~~~~vfG~V~~G--~~vl~~I~~~~~~~--~  157 (174)
                      .....+..+.++.....|+.+|+++|++.++++++|||||+++++|+||++|+|||+|++|  ||+|++|+++++++  +
T Consensus        93 ~~~~~~~~~~~~~~~~~~~~~G~~~~~~~g~~~~~sqFfIt~~~~p~Ldg~~tVFG~Vv~G~~mdvv~kI~~~~~~~~~~  172 (186)
T d1z81a1          93 SLSIYGEKFDDENFDIKHDKEGLLSMANSGPNTNGCQFFITTKKCEWLDGKNVVFGRIIDNDSLLLLKKIENVSVTPYIY  172 (186)
T ss_dssp             CCBTTBSCCCCCCCCSCCCSTTEEEECCSSSSCCCSCEEEESSCCGGGBTTBCEEEEECSHHHHHHHHHHHHSCBCTTTC
T ss_pred             cccccCCcccccccccccCCCccchhhhcCCCccccceeeecccccccCCCccEEEEEEeCccHHHHHHHhccCCCCCCC
Confidence            7777788888888999999999999999999999999999999999999999999999998  99999999999875  8


Q ss_pred             CcccceEEeEeeee
Q 030603          158 RTSQTVVIEDCGQL  171 (174)
Q Consensus       158 ~P~~~i~I~~~g~l  171 (174)
                      +|.++|+|++||+|
T Consensus       173 ~P~~~i~I~~CGel  186 (186)
T d1z81a1         173 KPKIPINVVECGEL  186 (186)
T ss_dssp             CBSSCEEEEEEEEC
T ss_pred             ccCCCEEEEeCCcC
Confidence            99999999999987

>d2rmca_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Mouse (Mus musculus), variant C [TaxId: 10090]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Mouse (Mus musculus), variant C [TaxId: 10090]

Probab=100.00  E-value=6e-48  Score=291.74  Aligned_cols=162  Identities=58%  Similarity=0.994  Sum_probs=151.8

Q ss_pred             CeEEEEEEECCEeceEEEEEEcCCCChHHHHHHHHHhcCCCCCCCCCccccccCCEEEEeecCceEeeCCCCCCCCCCCC
Q 030603            4 PRVFFDILIGKMNKGRVVMELFADVTPKTAENFRALCTGEKGIGMSGKPLHYKGSTFHRIIPNFMCQGGDFTRGNGTGGE   83 (174)
Q Consensus         4 p~v~~di~~~~t~~G~i~i~L~~~~aP~~~~nF~~l~~~~~~~~~~g~~~~y~g~~f~ri~~~~~iq~G~~~~~~~~~~~   83 (174)
                      .+||||+.+++++.|+|+|+||.+.||++|+||++||++++.       .+|+++.|||+++++++|+|+....++.++.
T Consensus         8 ~~vy~di~i~~~~~G~ivieL~~d~aP~tv~nF~~l~~~~k~-------~~Y~g~~f~rv~~~~~iq~G~~~~~~~~~~~   80 (182)
T d2rmca_           8 DKVFFDVRIGDKDVGRIVIGLFGNVVPKTVENFVALATGEKG-------YGYKGSIFHRVIKDFMIQGGDFTARDGTGGM   80 (182)
T ss_dssp             EEEEEEEEETTEEEEEEEEEECTTTSHHHHHHHHHHHHTTTS-------CSSTTCBEEEEETTTEEEECCCSSSSSSCCC
T ss_pred             CeEEEEEEECCEECcEEEEEEcCCCCcHHHHHHHHhhhcCCC-------ccccCceeeeeecCceEEcCCCCCCCCCCCC
Confidence            579999999999999999999999999999999999976542       3499999999999999999998877777888


Q ss_pred             cccCCccCCCccCCCCCCCeEEEeeecCCCCCcceEEEEccCCCCCCCCceEEEEEEcChHHHHHHHhCCCCC-CCcccc
Q 030603           84 SIYGMKFADENFKMKHTGPGILSMANAGPNTNGSQFFICTQKTPWLDGKHVVFGKVVDGYSVIKDMEKVGSES-GRTSQT  162 (174)
Q Consensus        84 ~~~~~~~~~e~~~~~~~~~G~v~~~~~~~~~~~s~FfItl~~~~~ld~~~~vfG~V~~G~~vl~~I~~~~~~~-~~P~~~  162 (174)
                      ..++..++++.....|+.+|+|+|++.++++++|||||++++.++||++|+|||+|++||+||++|++++++. ++|.++
T Consensus        81 ~~~~~~~~~~~~~~~~~~~G~lsma~~~~~s~~sqFfI~~~~~~~ld~~~~vFG~Vi~G~dvl~~I~~~~~~~~~~P~~~  160 (182)
T d2rmca_          81 SIYGETFPDENFKLKHYGIGWVSMANAGPDTNGSQFFITLTKPTWLDGKHVVFGKVLDGMTVVHSIELQATDGHDRPLTD  160 (182)
T ss_dssp             BTTBSCBCCCCCCSCCCSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTSCBCTTSCBSSC
T ss_pred             CCcCCcccccccccccCCCccEehhhcCCCccCccccccccCCchhcccceEEEEEechHHHHHHHHhCCcCCCCcCCCC
Confidence            8888888888899999999999999999999999999999999999999999999999999999999999877 999999


Q ss_pred             eEEeEeeeec
Q 030603          163 VVIEDCGQLA  172 (174)
Q Consensus       163 i~I~~~g~l~  172 (174)
                      |+|.+||+|+
T Consensus       161 v~I~~~g~l~  170 (182)
T d2rmca_         161 CTIVNSGKID  170 (182)
T ss_dssp             EEEEEEEEEE
T ss_pred             eEEEEeeEEe
Confidence            9999999996

>d1h0pa_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Caenorhabditis elegans, isoform 5 [TaxId: 6239]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Caenorhabditis elegans, isoform 5 [TaxId: 6239]

Probab=100.00  E-value=2.3e-48  Score=294.06  Aligned_cols=162  Identities=58%  Similarity=0.986  Sum_probs=152.1

Q ss_pred             CeEEEEEEECCEeceEEEEEEcCCCChHHHHHHHHHhcCCCCCCCCCccccccCCEEEEeecCceEeeCCCCCCCCCCCC
Q 030603            4 PRVFFDILIGKMNKGRVVMELFADVTPKTAENFRALCTGEKGIGMSGKPLHYKGSTFHRIIPNFMCQGGDFTRGNGTGGE   83 (174)
Q Consensus         4 p~v~~di~~~~t~~G~i~i~L~~~~aP~~~~nF~~l~~~~~~~~~~g~~~~y~g~~f~ri~~~~~iq~G~~~~~~~~~~~   83 (174)
                      .+|||||.++++++|+|+||||.+.||++|+||++||++.       +..+|+++.|||++|++++|+|+...+++.++.
T Consensus         7 ~~vy~di~i~~~~~G~i~IeL~~d~aP~tv~nF~~l~~~g-------~~~~y~g~~f~rv~~~~~iq~G~~~~~~~~g~~   79 (182)
T d1h0pa_           7 DRVYFDMEIGGKPIGRIVIGLFGKTVPKTATNFIELAKKP-------KGEGYPGSKFHRVIADFMIQGGDFTRGDGTGGR   79 (182)
T ss_dssp             EEEEEEEEETTEEEEEEEEEECTTTSHHHHHHHHHHHHSC-------TTTSSTTCBCCEEETTTEEEECCTTTSSSSCCC
T ss_pred             CeEEEEEEECCEECeEEEEEECCCCChHHHHHHHHHHHhc-------ccCCcCCceEEEEEecceEEcCCCCCCCCCCCC
Confidence            3799999999999999999999999999999999999654       333599999999999999999999887888888


Q ss_pred             cccCCccCCCccCCCCCCCeEEEeeecCCCCCcceEEEEccCCCCCCCCceEEEEEEcChHHHHHHHhCCCCC-CCcccc
Q 030603           84 SIYGMKFADENFKMKHTGPGILSMANAGPNTNGSQFFICTQKTPWLDGKHVVFGKVVDGYSVIKDMEKVGSES-GRTSQT  162 (174)
Q Consensus        84 ~~~~~~~~~e~~~~~~~~~G~v~~~~~~~~~~~s~FfItl~~~~~ld~~~~vfG~V~~G~~vl~~I~~~~~~~-~~P~~~  162 (174)
                      ..++..+.++.....|+.+|+++|++.++++++|||||+++++|+||++|+|||+|++||++|++|++++++. ++|+++
T Consensus        80 ~~~~~~~~~~~~~~~~~~~G~~~~a~~g~~s~~sqFfIt~~~~~~ldg~ytvFG~Vi~G~dvl~~I~~~~~~~~~~P~~~  159 (182)
T d1h0pa_          80 SIYGEKFADENFKLKHYGAGWLSMANAGADTNGSQFFITTVKTPWLDGRHVVFGKILEGMDVVRKIEQTEKLPGDRPKQD  159 (182)
T ss_dssp             BTTBSCBCCCCCCSCCCSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTSCEETTTEESSC
T ss_pred             CCCCCccCcccccccccCCceeeecccCCCCcCccccccccccccccccceeEEEEeehHHHHHHHHhcCCCCCCCCCCC
Confidence            8888888888889999999999999999999999999999999999999999999999999999999999888 899999


Q ss_pred             eEEeEeeeec
Q 030603          163 VVIEDCGQLA  172 (174)
Q Consensus       163 i~I~~~g~l~  172 (174)
                      |+|.+||+|+
T Consensus       160 v~I~~cG~l~  169 (182)
T d1h0pa_         160 VIIAASGHIA  169 (182)
T ss_dssp             EEEEEEEEEE
T ss_pred             EEEEECCeEe
Confidence            9999999997

>d2c3ba1 b.62.1.1 (A:1-171) Cyclophilin (eukaryotic) {Aspergillus fumigatus [TaxId: 5085]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Aspergillus fumigatus [TaxId: 5085]

Probab=100.00  E-value=7.9e-47  Score=283.00  Aligned_cols=161  Identities=64%  Similarity=1.056  Sum_probs=120.8

Q ss_pred             CeEEEEEE-----ECCEeceEEEEEEcCCCChHHHHHHHHHhcCCCCCCCCCccccccCCEEEEeecCceEeeCCCCCCC
Q 030603            4 PRVFFDIL-----IGKMNKGRVVMELFADVTPKTAENFRALCTGEKGIGMSGKPLHYKGSTFHRIIPNFMCQGGDFTRGN   78 (174)
Q Consensus         4 p~v~~di~-----~~~t~~G~i~i~L~~~~aP~~~~nF~~l~~~~~~~~~~g~~~~y~g~~f~ri~~~~~iq~G~~~~~~   78 (174)
                      |+|||||+     +.+|++|+|+||||.+.||++|+||++||+++.+       ..|+++.|||++|++++|+|++..++
T Consensus         2 ~~v~~di~~~~~~~~~T~~G~i~IeL~~~~aP~tv~nF~~l~~~~~~-------~~y~~~~f~ri~~~~~iq~G~~~~~~   74 (171)
T d2c3ba1           2 SQVFFDVEYAPVGTAETKVGRIVFNLFDKDVPKTAKNFRELCKRPAG-------EGYRESTFHRIIPNFMIQGGDFTRGN   74 (171)
T ss_dssp             CCEEEEEEECCTTCSCCEEEEEEEEECTTTSHHHHHHHHHHHHSCTT-------TSSTTCBCCEEETTTEEEECC-----
T ss_pred             CeEEEeeeccccccccceeeEEEEEEcCCCChHHHHHHHHHhhhccc-------ccccCceeeEEEEEEeeEcCCccCCC
Confidence            68999998     6789999999999999999999999999976543       23999999999999999999988777


Q ss_pred             CCCCCcccCCccCCCccCCCCCCCeEEEeeecCCCCCcceEEEEccCCCCCCCCceEEEEEEc--ChHHHHHHHhCCCCC
Q 030603           79 GTGGESIYGMKFADENFKMKHTGPGILSMANAGPNTNGSQFFICTQKTPWLDGKHVVFGKVVD--GYSVIKDMEKVGSES  156 (174)
Q Consensus        79 ~~~~~~~~~~~~~~e~~~~~~~~~G~v~~~~~~~~~~~s~FfItl~~~~~ld~~~~vfG~V~~--G~~vl~~I~~~~~~~  156 (174)
                      +.++....+....++...+.|+.+|+|||++.++++++|||||++++.|+||++|+|||+|++  ||+||++|+++++++
T Consensus        75 ~~~~~~~~~~~~~~~~~~~~~~~~G~lsma~~~~~s~~sqFfI~~~~~~~ldg~~tvFG~Vie~~G~dvl~~I~~~~t~~  154 (171)
T d2c3ba1          75 GTGGRSIYGDKFADENFSRKHDKKGILSMANAGPNTNGSQFFITTAVTSWLDGKHVVFGEVADEKSYSVVKEIEALGSSS  154 (171)
T ss_dssp             -----------------CHHHHHTCEEEEC---------CEEEECSCCTTCCSCCEEEEEECSHHHHHHHHHHHTTCCTT
T ss_pred             CCCCCcCCCCccccccccccCCCCceEEeeecCCCCCCcceeeccCCccccCCCceEEEEEEeccCHHHHHHHHcCCCCC
Confidence            777777777777888888999999999999999999999999999999999999999999994  999999999999988


Q ss_pred             --CCcccceEEeEeeee
Q 030603          157 --GRTSQTVVIEDCGQL  171 (174)
Q Consensus       157 --~~P~~~i~I~~~g~l  171 (174)
                        .+|..+|+|.+||+|
T Consensus       155 g~~~p~~~v~I~~cGel  171 (171)
T d2c3ba1         155 GSVRSNTRPKIVNCGEL  171 (171)
T ss_dssp             SCCCSSSCCEEEEEEEC
T ss_pred             CCcCCCCCEEEEeCccC
Confidence              478999999999997

>d2ok3a1 b.62.1.1 (A:1-159) Cyclophilin-like protein PPIL3B {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin-like protein PPIL3B
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.8e-44  Score=266.15  Aligned_cols=149  Identities=48%  Similarity=0.747  Sum_probs=132.9

Q ss_pred             CEeceEEEEEEcCCCChHHHHHHHHHhcCCCCCCCCCccccccCCEEEEeecCceEeeCCCCCCCCCCCCcccCCccCCC
Q 030603           14 KMNKGRVVMELFADVTPKTAENFRALCTGEKGIGMSGKPLHYKGSTFHRIIPNFMCQGGDFTRGNGTGGESIYGMKFADE   93 (174)
Q Consensus        14 ~t~~G~i~i~L~~~~aP~~~~nF~~l~~~~~~~~~~g~~~~y~g~~f~ri~~~~~iq~G~~~~~~~~~~~~~~~~~~~~e   93 (174)
                      +|++|+|+|+||++.||++|+||++||+++          ||+++.|||+++++++|+|+.... ..++...++...+.|
T Consensus         6 ~T~~G~i~ieL~~~~aP~tv~nF~~L~~~g----------~Y~~~~f~rv~~~~~iq~Gd~~~~-~~~~~~~~~~~~~~e   74 (159)
T d2ok3a1           6 HTDVGDIKIEVFCERTPKTCENFLALCASN----------YYNGCIFHRNIKGFMVQTGDPTGT-GRGGNSIWGKKFEDE   74 (159)
T ss_dssp             EETTEEEEEEECTTTCHHHHHHHHHHHHTT----------TTTTCBCCEEETTTEEEECCTTSS-SSCCCCTTSSCBCCC
T ss_pred             EeCCeEEEEEEcCCCChHHHHHHHHHHhhh----------cccceeEecccCCeEEEeCCcccc-CCCCcccCCCccccc
Confidence            489999999999999999999999999543          499999999999999999997643 333444556666666


Q ss_pred             cc-CCCCCCCeEEEeeecCCCCCcceEEEEccCCCCCCCCceEEEEEEcChHHHHHHHhCCCCC--CCcccceEEeEeee
Q 030603           94 NF-KMKHTGPGILSMANAGPNTNGSQFFICTQKTPWLDGKHVVFGKVVDGYSVIKDMEKVGSES--GRTSQTVVIEDCGQ  170 (174)
Q Consensus        94 ~~-~~~~~~~G~v~~~~~~~~~~~s~FfItl~~~~~ld~~~~vfG~V~~G~~vl~~I~~~~~~~--~~P~~~i~I~~~g~  170 (174)
                      .. .++|+.+|+|||++.++++++|||||++++.|++|++|+|||||++||++|++|+++++++  ++|..+|+|.+|++
T Consensus        75 ~~~~~~~~~~G~lsma~~~~~s~~sqFfIt~~~~p~ld~~~tvFG~V~~G~~vl~~I~~~~~~~~~~~P~~~i~I~~v~i  154 (159)
T d2ok3a1          75 YSEYLKHNVRGVVSMANNGPNTNGSQFFITYGKQPHLDMKYTVFGKVIDGLETLDELEKLPVNEKTYRPLNDVHIKDITI  154 (159)
T ss_dssp             CCTTCCSCSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTCCBCTTTCCBSSCCBEEEEEE
T ss_pred             cccCCCCCCCeEEEEeeCCCCCcCcceEeeeccCcccccceEEEEecccchHHHHHHHcCcCCCCCCCcCCCcEEEEEEE
Confidence            44 6889999999999999999999999999999999999999999999999999999999876  78999999999999


Q ss_pred             ecc
Q 030603          171 LAE  173 (174)
Q Consensus       171 l~~  173 (174)
                      |+|
T Consensus       155 ~~~  157 (159)
T d2ok3a1         155 HAN  157 (159)
T ss_dssp             ECC
T ss_pred             EeC
Confidence            986

>d1zkca1 b.62.1.1 (A:280-457) Peptidyl-prolyl cis-trans isomerase-like 2, Cyclophilin-60, PPI domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Peptidyl-prolyl cis-trans isomerase-like 2, Cyclophilin-60, PPI domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.8e-43  Score=265.13  Aligned_cols=148  Identities=50%  Similarity=0.845  Sum_probs=135.5

Q ss_pred             EeceEEEEEEcCCCChHHHHHHHHHhcCCCCCCCCCccccccCCEEEEeecCceEeeCCCCCCCCCCCCcccCCccCCCc
Q 030603           15 MNKGRVVMELFADVTPKTAENFRALCTGEKGIGMSGKPLHYKGSTFHRIIPNFMCQGGDFTRGNGTGGESIYGMKFADEN   94 (174)
Q Consensus        15 t~~G~i~i~L~~~~aP~~~~nF~~l~~~~~~~~~~g~~~~y~g~~f~ri~~~~~iq~G~~~~~~~~~~~~~~~~~~~~e~   94 (174)
                      |+.|+|+|+||.+.||++|+||++||+.+          +|+|+.|||++|++++|+|+.. ..+.++....+.++.+|.
T Consensus         7 T~~G~i~IeL~~~~aP~tv~nF~~L~~~~----------~Y~g~~f~rv~~~~~iq~Gd~~-~~~~~~~~~~~~~~~~E~   75 (178)
T d1zkca1           7 TNKGDLNLELHCDLTPKTCENFIRLCKKH----------YYDGTIFHRSIRNFVIQGGDPT-GTGTGGESYWGKPFKDEF   75 (178)
T ss_dssp             ETTEEEEEEECTTTSHHHHHHHHHHHHTT----------TTTTEEEEEEETTTEEEECCTT-SSSSCCCBTTBSCBCCCC
T ss_pred             eCCEEEEEEEcCCCChHHHHHHHHHHhcC----------CcCceEeeeccceeEEecCCcc-CCCCCCcccCCCCcCCcc
Confidence            99999999999999999999999999533          4999999999999999999976 355666777788888875


Q ss_pred             c-CCCCCCCeEEEeeecCCCCCcceEEEEccCCCCCCCCceEEEEEEcChHHHHHHHhCCCCC--CCcccceEEeEeeee
Q 030603           95 F-KMKHTGPGILSMANAGPNTNGSQFFICTQKTPWLDGKHVVFGKVVDGYSVIKDMEKVGSES--GRTSQTVVIEDCGQL  171 (174)
Q Consensus        95 ~-~~~~~~~G~v~~~~~~~~~~~s~FfItl~~~~~ld~~~~vfG~V~~G~~vl~~I~~~~~~~--~~P~~~i~I~~~g~l  171 (174)
                      . .++|..+|+|+|+++++++++|||||+++++|+||++|+|||+|++||++|++|++++++.  ++|.++|+|.+|.+|
T Consensus        76 ~~~l~~~~~G~lsma~~~~~s~~sqF~It~~~~~~ld~~~~vFG~Vv~G~dvl~~I~~~~t~~~~~~P~~~v~I~~~~Il  155 (178)
T d1zkca1          76 RPNLSHTGRGILSMANSGPNSNRSQFFITFRSCAYLDKKHTIFGRVVGGFDVLTAMENVESDPKTDRPKEEIRIDATTVF  155 (178)
T ss_dssp             CTTCCSCSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHHSCBCTTTCCBSSCCEEEEEEEE
T ss_pred             ccccCCCCCeEEEEeecCCCCccceeeccccCCcccCCcceEEEEeeCcHHHHHHHHcCCCCCCCCccCCCeEEEEEEEE
Confidence            4 6888899999999999999999999999999999999999999999999999999999864  899999999999998


Q ss_pred             cc
Q 030603          172 AE  173 (174)
Q Consensus       172 ~~  173 (174)
                      .|
T Consensus       156 ~~  157 (178)
T d1zkca1         156 VD  157 (178)
T ss_dssp             EC
T ss_pred             cC
Confidence            76

>d1xwna1 b.62.1.1 (A:1-166) Peptidyl-prolyl cis-trans isomerase-like 1, PPIL1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Peptidyl-prolyl cis-trans isomerase-like 1, PPIL1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.2e-43  Score=264.33  Aligned_cols=152  Identities=48%  Similarity=0.843  Sum_probs=137.6

Q ss_pred             CCCeEEEEEEECCEeceEEEEEEcCCCChHHHHHHHHHhcCCCCCCCCCccccccCCEEEEeecCceEeeCCCCCCCCCC
Q 030603            2 TNPRVFFDILIGKMNKGRVVMELFADVTPKTAENFRALCTGEKGIGMSGKPLHYKGSTFHRIIPNFMCQGGDFTRGNGTG   81 (174)
Q Consensus         2 ~~p~v~~di~~~~t~~G~i~i~L~~~~aP~~~~nF~~l~~~~~~~~~~g~~~~y~g~~f~ri~~~~~iq~G~~~~~~~~~   81 (174)
                      ++|+|+|+     |++|+|+||||++.||++|+||++||+       .|   ||+++.|||+++++++|+|++. ..+.+
T Consensus        10 ~~p~v~~~-----T~~G~i~ieL~~~~aP~tv~nF~~L~~-------~g---~Y~g~~f~rv~~~~~iq~Gd~~-~~~~~   73 (166)
T d1xwna1          10 QPPNVYLE-----TSMGIIVLELYWKHAPKTCKNFAELAR-------RG---YYNGTKFHRIIKDFMIQGGDPT-GTGRG   73 (166)
T ss_dssp             CCCEEEEE-----ESSCEEEEEECTTTCHHHHHHHHHHHH-------HT---SSTTCCEEEEETTTEEEECCST-TTTSS
T ss_pred             CCCEEEEE-----ECceeEEEEEcCCCChHHHHHHHHHHh-------cC---CcCceeeeEEcccEEEEeCCCC-CCCCC
Confidence            47999999     999999999999999999999999994       33   4999999999999999999985 45556


Q ss_pred             CCcccCCccCCCc-cCCCCCCCeEEEeeecCCCCCcceEEEEccCCCCCCCCceEEEEEEcChHHHHHHHhCCCCC-CCc
Q 030603           82 GESIYGMKFADEN-FKMKHTGPGILSMANAGPNTNGSQFFICTQKTPWLDGKHVVFGKVVDGYSVIKDMEKVGSES-GRT  159 (174)
Q Consensus        82 ~~~~~~~~~~~e~-~~~~~~~~G~v~~~~~~~~~~~s~FfItl~~~~~ld~~~~vfG~V~~G~~vl~~I~~~~~~~-~~P  159 (174)
                      +...++..+++|. ..+.|+.+|+|+|++.++++++|||||++++.|+||++|+|||+|++|||||++|++++++. ++|
T Consensus        74 ~~~~~~~~~~~e~~~~~~~~~~G~lsm~~~~~~s~~sqFfI~~~~~~~ld~~~tvFG~Vi~G~dvl~~I~~~~t~~~~~P  153 (166)
T d1xwna1          74 GASIYGKQFEDELHPDLKFTGAGILAMANAGPDTNGSQFFVTLAPTQWLDGKHTIFGRVCQGIGMVNRVGMVETNSQDRP  153 (166)
T ss_dssp             CCCSSCSCCCCCCCTTCCSCSSSEEEEEEEETTEEEEEEEEECSCCSTTTTTSEEEEECSSCHHHHHHHHHSCBCSSSCB
T ss_pred             CccCCCCccccccCCCCCCCCCeEEEecccCCCCCCcceEEeecChhhccccceEEEEEechHHHHHHHHhCCCCCCCCC
Confidence            6667777777775 47888999999999999999999999999999999999999999999999999999999877 999


Q ss_pred             ccceEEeEee
Q 030603          160 SQTVVIEDCG  169 (174)
Q Consensus       160 ~~~i~I~~~g  169 (174)
                      .++|+|.++-
T Consensus       154 ~~~I~I~~a~  163 (166)
T d1xwna1         154 VDDVKIIKAY  163 (166)
T ss_dssp             SSCCCEEEEE
T ss_pred             CCCeEEEEee
Confidence            9999998863

>d2fu0a1 b.62.1.1 (A:5-159) Putative cyclophilin PFE0505w {Plasmodium falciparum [TaxId: 5833]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Putative cyclophilin PFE0505w
species: Plasmodium falciparum [TaxId: 5833]

Probab=100.00  E-value=1.5e-42  Score=255.70  Aligned_cols=146  Identities=45%  Similarity=0.764  Sum_probs=132.4

Q ss_pred             CEeceEEEEEEcCCCChHHHHHHHHHhcCCCCCCCCCccccccCCEEEEeecCceEeeCCCCCCCCCCCCcccCCccCCC
Q 030603           14 KMNKGRVVMELFADVTPKTAENFRALCTGEKGIGMSGKPLHYKGSTFHRIIPNFMCQGGDFTRGNGTGGESIYGMKFADE   93 (174)
Q Consensus        14 ~t~~G~i~i~L~~~~aP~~~~nF~~l~~~~~~~~~~g~~~~y~g~~f~ri~~~~~iq~G~~~~~~~~~~~~~~~~~~~~e   93 (174)
                      .|++|+|+|+||++.||++|+||++||++       |   ||+|+.|||+++++++|+|++. +...++.+.++..++++
T Consensus         7 ~T~~G~i~ieL~~~~aP~tv~nF~~l~~~-------g---~Y~g~~f~rv~~~~~iq~Gd~~-~~~~~~~~~~~~~~~~~   75 (155)
T d2fu0a1           7 YTTMGDIHISLFYKECKKTVQNFSVHSIN-------G---YYNNCIFHRVIKHFMVQTGDPS-GDGTGGESIWGNEFEDE   75 (155)
T ss_dssp             EETTEEEEEEECTTTCHHHHHHHHHHHHT-------T---TTTTCBCCEEETTTEEEECCTT-SSSSCCCCTTSSCBCCC
T ss_pred             EEcccEEEEEEcCCCChHHHHHHhhHhhC-------C---ccccceeeeeeecceeeccCCC-CCCcCCcccCCCccccc
Confidence            39999999999999999999999999954       3   4999999999999999999986 44455667777788877


Q ss_pred             cc-CCCCCCCeEEEeeecCCCCCcceEEEEccCCCCCCCCceEEEEEEcChHHHHHHHhCCCCC-CCcccceEEeEeee
Q 030603           94 NF-KMKHTGPGILSMANAGPNTNGSQFFICTQKTPWLDGKHVVFGKVVDGYSVIKDMEKVGSES-GRTSQTVVIEDCGQ  170 (174)
Q Consensus        94 ~~-~~~~~~~G~v~~~~~~~~~~~s~FfItl~~~~~ld~~~~vfG~V~~G~~vl~~I~~~~~~~-~~P~~~i~I~~~g~  170 (174)
                      .. .+.|.++|+++|++.++++++|||||++++.|+||++|+|||+|++||++|++|++++++. ++|+++|+|.+|.+
T Consensus        76 ~~~~~~~~~~~~~~~~~~~~~s~~sqFfI~~~~~~~ld~~~tvFG~Vi~G~~vv~~I~~~~t~~~~~P~~~i~I~~v~i  154 (155)
T d2fu0a1          76 FFDHLNHSKPFMVSMANCGPNTNGSQFFITTVPCPWLDFKHTVFGKVTQGSKIVLDIEKVRTDKRDKPLEDIKILNIKI  154 (155)
T ss_dssp             CBTTBCSSSSSEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTSCBCTTSCBSSCCBEEEEEE
T ss_pred             cccccccCCccEEEecccCCCCCCccceecccCccccccceEEEEEEeccHHHHHHHHhCCCCCCCCcCCCcEEEEEEE
Confidence            66 5788888999999999999999999999999999999999999999999999999999877 99999999999964

>d1v9ta_ b.62.1.1 (A:) Peptidyl-prolyl cis-trans isomerase A, PpiA {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Peptidyl-prolyl cis-trans isomerase A, PpiA
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=8.7e-43  Score=259.67  Aligned_cols=153  Identities=31%  Similarity=0.501  Sum_probs=134.2

Q ss_pred             CCCeEEEEEEECCEeceEEEEEEcCCCChHHHHHHHHHhcCCCCCCCCCccccccCCEEEEeecCceEeeCCCCCCCCCC
Q 030603            2 TNPRVFFDILIGKMNKGRVVMELFADVTPKTAENFRALCTGEKGIGMSGKPLHYKGSTFHRIIPNFMCQGGDFTRGNGTG   81 (174)
Q Consensus         2 ~~p~v~~di~~~~t~~G~i~i~L~~~~aP~~~~nF~~l~~~~~~~~~~g~~~~y~g~~f~ri~~~~~iq~G~~~~~~~~~   81 (174)
                      .||+|.|+     |+.|+|+|+||++.||++|+||++||+.       |   ||+|+.|||+++++++|+|+.......+
T Consensus         3 g~~~V~l~-----T~~G~i~ieL~~~~aP~tv~nF~~L~~~-------~---~Y~g~~fhRv~~~~~iq~G~~~~~~~~~   67 (166)
T d1v9ta_           3 GDPHVLLT-----TSAGNIELELDKQKAPVSVQNFVDYVNS-------G---FYNNTTFHRVIPGFMIQGGGFTEQMQQK   67 (166)
T ss_dssp             CSCEEEEE-----ETTEEEEEEECTTTCHHHHHHHHHHHHT-------T---TTTTCBEEEEETTTEEEESSBCTTCCBC
T ss_pred             CCCEEEEE-----ECCeeEEEEEeCCCChHHHHHHHHHhhC-------C---ccccceeeEEEEEeecccCCcCCccccc
Confidence            48999998     9999999999999999999999999953       3   4999999999999999999976544433


Q ss_pred             CCcccCCccCCCccCCCCCCCeEEEeeec-CCCCCcceEEEEccCCCCCCCC-----ceEEEEEEcChHHHHHHHhCCCC
Q 030603           82 GESIYGMKFADENFKMKHTGPGILSMANA-GPNTNGSQFFICTQKTPWLDGK-----HVVFGKVVDGYSVIKDMEKVGSE  155 (174)
Q Consensus        82 ~~~~~~~~~~~e~~~~~~~~~G~v~~~~~-~~~~~~s~FfItl~~~~~ld~~-----~~vfG~V~~G~~vl~~I~~~~~~  155 (174)
                      .   .+.++.+|.....++.+|.|+|++. ++++++|||||++++.|+||+.     |+|||+|++|||+|++|++++++
T Consensus        68 ~---~~~~~~~e~~~~~~~~rg~v~~~~~~~~~s~~sqFfI~~~~~~~ld~~~~~~~~tvfG~VveG~dvl~~I~~~~~~  144 (166)
T d1v9ta_          68 K---PNPPIKNEADNGLRNTRGTIAMARTADKDSATSQFFINVADNAFLDHGQRDFGYAVFGKVVKGMDVADKISQVPTH  144 (166)
T ss_dssp             C---CCCCBCCCGGGSCCCCTTEEEECCCSSTTCBCSCEEEESSCCGGGSCCSSCCCCCEEEEEEECHHHHHHHHTSCEE
T ss_pred             C---CCCCccccccccccccCCEEEEEeeecCCCcccccccccCCccccccccccCCEEEeeEEeccHHHHHHHHhCccc
Confidence            3   3567788888777778999999984 5899999999999999988864     89999999999999999999887


Q ss_pred             C-----CCcccceEEeEeeeec
Q 030603          156 S-----GRTSQTVVIEDCGQLA  172 (174)
Q Consensus       156 ~-----~~P~~~i~I~~~g~l~  172 (174)
                      +     ++|.++|+|.+|++|.
T Consensus       145 ~~~~~~~~P~~~v~I~~~~vlp  166 (166)
T d1v9ta_         145 DVGPYQNVPSKPVVILSATVLP  166 (166)
T ss_dssp             EETTEEEEESSCCBEEEEEECC
T ss_pred             CCCCCCCccCCCeEEEEEEEcC
Confidence            6     4899999999999983

>d2b71a1 b.62.1.1 (A:23-191) Cyclophilin-like protein PY00693 {Plasmodium yoelii [TaxId: 5861]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin-like protein PY00693
species: Plasmodium yoelii [TaxId: 5861]

Probab=100.00  E-value=4.8e-42  Score=256.36  Aligned_cols=144  Identities=46%  Similarity=0.762  Sum_probs=129.4

Q ss_pred             EeceEEEEEEcCCCChHHHHHHHHHhcCCCCCCCCCccccccCCEEEEeecCceEeeCCCCCCCCCCCCcccCCccCCCc
Q 030603           15 MNKGRVVMELFADVTPKTAENFRALCTGEKGIGMSGKPLHYKGSTFHRIIPNFMCQGGDFTRGNGTGGESIYGMKFADEN   94 (174)
Q Consensus        15 t~~G~i~i~L~~~~aP~~~~nF~~l~~~~~~~~~~g~~~~y~g~~f~ri~~~~~iq~G~~~~~~~~~~~~~~~~~~~~e~   94 (174)
                      |++|+|+|+||++.||++|+||++||+       .|   ||+++.|||+++++++|+|+... ...++.......+..|.
T Consensus        23 T~~G~i~IeL~~d~aP~tv~nF~~L~~-------~g---~Y~~~~f~rv~~~~~iq~g~~~~-~~~~~~~~~~~~~~~e~   91 (169)
T d2b71a1          23 TNLGDFEVELYWYHSPKTCLNFYTLCE-------MG---FYDNTIFHRVIPNFVIQGGDPTG-TGKGGKSIYGEYFEDEI   91 (169)
T ss_dssp             ETTEEEEEEECTTTSHHHHHHHHHHHH-------TT---TTTTEEEEEEETTTEEEEEETTS-SSSCCCBTTBSCBCCCC
T ss_pred             eCceeEEEEEeCCCCcHHHHHHHHHhh-------CC---ccceeeeccccceeeEecccccc-ccCCCcccccccccccc
Confidence            899999999999999999999999994       33   49999999999999999999763 33445555566666665


Q ss_pred             c-CCCCCCCeEEEeeecCCCCCcceEEEEccCCCCCCCCceEEEEEEcChHHHHHHHhCCCCC-CCcccceEEeEee
Q 030603           95 F-KMKHTGPGILSMANAGPNTNGSQFFICTQKTPWLDGKHVVFGKVVDGYSVIKDMEKVGSES-GRTSQTVVIEDCG  169 (174)
Q Consensus        95 ~-~~~~~~~G~v~~~~~~~~~~~s~FfItl~~~~~ld~~~~vfG~V~~G~~vl~~I~~~~~~~-~~P~~~i~I~~~g  169 (174)
                      . .++|..+|+|+|++.++++++|||||++++.|+||++|+|||+|++|||||++|++++++. ++|..+|+|.+|+
T Consensus        92 ~~~l~h~~~g~ls~~~~~p~s~~sqFfIt~~~~~~ld~~~tvFG~Vv~G~dvl~~I~~~~~~~~~~P~~~i~I~~~~  168 (169)
T d2b71a1          92 NKELKHTGAGILSMSNNGPNTNSSQFFITLAPLPHLDGKHTIFARVSKNMTCIENIASVQTTATNKPIFDLKILRTS  168 (169)
T ss_dssp             CTTCCCCSTTEEEECCSSTTCBSSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTSCBCTTCCBSSCCEEEEEE
T ss_pred             ccccCCCCcEEEEhhhCCCCCCCCEEEEecCCcchhhhhcceeeEEeccHHHHHHHHhCCCCCCCCCCCCeEEEEcc
Confidence            4 6888999999999999999999999999999999999999999999999999999999887 9999999999986

>d2a2na1 b.62.1.1 (A:483-646) Peptidylprolyl isomerase domain and WD repeat-containing protein 1, PPWD1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Peptidylprolyl isomerase domain and WD repeat-containing protein 1, PPWD1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.6e-41  Score=252.25  Aligned_cols=157  Identities=41%  Similarity=0.615  Sum_probs=132.9

Q ss_pred             CCeEEEEEEECCEeceEEEEEEcCCCChHHHHHHHHHhcCCCCCCCCCccccccCCEEEEeecCceEeeCCCCCCCCCCC
Q 030603            3 NPRVFFDILIGKMNKGRVVMELFADVTPKTAENFRALCTGEKGIGMSGKPLHYKGSTFHRIIPNFMCQGGDFTRGNGTGG   82 (174)
Q Consensus         3 ~p~v~~di~~~~t~~G~i~i~L~~~~aP~~~~nF~~l~~~~~~~~~~g~~~~y~g~~f~ri~~~~~iq~G~~~~~~~~~~   82 (174)
                      .|+.+.+.++-+|+.|+|+|+||.+.||++|+||++||+       .|   +|+|+.|||+++++++|+|++......+.
T Consensus         4 ~~~~~~~~a~~~T~~G~i~ieL~~~~aP~tv~nF~~l~~-------~g---~Y~g~~f~rv~~~~~iq~G~~~~~~~~~~   73 (164)
T d2a2na1           4 GPKRVSDSAIIHTSMGDIHTKLFPVECPKTVENFCVHSR-------NG---YYNGHTFHRIIKGFMIQTGDPTGTGMGGE   73 (164)
T ss_dssp             SCCCCCSEEEEEETTEEEEEEECTTTCHHHHHHHHHHHH-------TT---TTTTCBCCEEETTTEEEECCTTSSSSCCC
T ss_pred             CCccccCEEEEEeceeEEEEEEcCCCChHHHHHHHHHHh-------CC---CcccceeeEEeeeeeEeecccccccCCCc
Confidence            344444455556999999999999999999999999994       33   39999999999999999999764433333


Q ss_pred             CcccCCccCC-CccCCCCCCCeEEEeeecCCCCCcceEEEEccCCCCCCCCceEEEEEEcChHHHHHHHhCCCCC--CCc
Q 030603           83 ESIYGMKFAD-ENFKMKHTGPGILSMANAGPNTNGSQFFICTQKTPWLDGKHVVFGKVVDGYSVIKDMEKVGSES--GRT  159 (174)
Q Consensus        83 ~~~~~~~~~~-e~~~~~~~~~G~v~~~~~~~~~~~s~FfItl~~~~~ld~~~~vfG~V~~G~~vl~~I~~~~~~~--~~P  159 (174)
                      ... ...+.. +...+.|..+|+++|++.++++++|||||++++.|+||++|+|||+|++||+||++|++++++.  ++|
T Consensus        74 ~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~s~~sqFfI~~~~~~~ld~~~tVFG~V~~G~dvv~~I~~~~~~~~~~~P  152 (164)
T d2a2na1          74 SIW-GGEFEDEFHSTLRHDRPYTLSMANAGSNTNGSQFFITVVPTPWLDNKHTVFGRVTKGMEVVQRISNVKVNPKTDKP  152 (164)
T ss_dssp             CTT-SSCBCCCCCTTCCSCSSSEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTSCBCTTTCCB
T ss_pred             eee-ecccccccccccccCccceeehhhcCCCCCcccceecccCccccccceeEEEEecChHHHHHHHHcCCcCCCCCCc
Confidence            322 333444 3457889999999999999999999999999999999999999999999999999999999975  899


Q ss_pred             ccceEEeEeee
Q 030603          160 SQTVVIEDCGQ  170 (174)
Q Consensus       160 ~~~i~I~~~g~  170 (174)
                      .++|+|.+|.+
T Consensus       153 ~~~V~I~~v~i  163 (164)
T d2a2na1         153 YEDVSIINITV  163 (164)
T ss_dssp             SSCCBEEEEEE
T ss_pred             CCCcEEEEEEE
Confidence            99999999975

>d1w74a_ b.62.1.1 (A:) Peptidyl-prolyl cis-trans isomerase A, PpiA {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Peptidyl-prolyl cis-trans isomerase A, PpiA
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=100.00  E-value=1.3e-40  Score=248.94  Aligned_cols=152  Identities=43%  Similarity=0.738  Sum_probs=130.4

Q ss_pred             EeceEEEEEEcCCCChHHHHHHHHHhcCCCCCC-----CCCccccccCCEEEEeecCceEeeCCCCCCCCCCCCcccCCc
Q 030603           15 MNKGRVVMELFADVTPKTAENFRALCTGEKGIG-----MSGKPLHYKGSTFHRIIPNFMCQGGDFTRGNGTGGESIYGMK   89 (174)
Q Consensus        15 t~~G~i~i~L~~~~aP~~~~nF~~l~~~~~~~~-----~~g~~~~y~g~~f~ri~~~~~iq~G~~~~~~~~~~~~~~~~~   89 (174)
                      |+.|+|+||||++.||++|+||++||+++++.+     ......||+++.|||+++++++|+|++.. .+.++.   ...
T Consensus        10 T~~G~I~ieL~~d~aP~tv~nF~~L~~~~~~~~~~~~~~~~~~~~Y~g~~~~rv~~~~~iq~g~~~~-~~~~~~---~~~   85 (171)
T d1w74a_          10 TNRGDIKIALFGNHAPKTVANFVGLAQGTKDYSTQNASGGPSGPFYDGAVFHRVIQGFMIQGGDPTG-TGRGGP---GYK   85 (171)
T ss_dssp             ETTEEEEEEECTTTSHHHHHHHHHHHHTCSCCSSCCTTBSSSSCSSTTEEEEEEETTTEEEECCTTS-SSSCCS---SCC
T ss_pred             ECCEEEEEEEcCCCChHHHHHHHHHHhcCCccccccccccccCceECCeecccccCCceeEcccccC-CCCCCc---ccc
Confidence            999999999999999999999999998775433     12234579999999999999999999763 222222   223


Q ss_pred             cCCC-ccCCCCCCCeEEEeeecCCCCCcceEEEEccCCCCCCCCceEEEEEE--cChHHHHHHHhCCCCC-CCcccceEE
Q 030603           90 FADE-NFKMKHTGPGILSMANAGPNTNGSQFFICTQKTPWLDGKHVVFGKVV--DGYSVIKDMEKVGSES-GRTSQTVVI  165 (174)
Q Consensus        90 ~~~e-~~~~~~~~~G~v~~~~~~~~~~~s~FfItl~~~~~ld~~~~vfG~V~--~G~~vl~~I~~~~~~~-~~P~~~i~I  165 (174)
                      +.+| ...+.|+++|+++|++.++++++|||||++++.|+||++|+|||+|+  +||+||++|++++++. ++|..+|+|
T Consensus        86 ~~~e~~~~~~~~~~g~v~~~~~~~~s~~sqFfIt~~~~p~ld~~~tVFG~Vv~geGmdvl~~I~~~~~~~~~~P~~~i~I  165 (171)
T d1w74a_          86 FADEFHPELQFDKPYLLAMANAGPGTNGSQFFITVGKTPHLNRRHTIFGEVIDAESQRVVEAISKTATDGNDRPTDPVVI  165 (171)
T ss_dssp             BCCCCCTTCCSCSSSEEEECCSSTTCBSSCEEEESSCCGGGTTTSCEEEEECSHHHHHHHHHHHTSCBCTTSCBSSCCEE
T ss_pred             cccccCCCcCCCCCEEEEEEecCCCCCCcceEeeccCCCccccccEEEEEEeccccHHHHHHHHcCCcCCCCccCCCcEE
Confidence            4444 45788999999999999999999999999999999999999999999  5999999999999888 999999999


Q ss_pred             eEeee
Q 030603          166 EDCGQ  170 (174)
Q Consensus       166 ~~~g~  170 (174)
                      .+|.+
T Consensus       166 ~~v~i  170 (171)
T d1w74a_         166 ESITI  170 (171)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            99975

>d1lopa_ b.62.1.1 (A:) Peptidyl-prolyl cis-trans isomerase A, PpiA {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Peptidyl-prolyl cis-trans isomerase A, PpiA
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=1.7e-39  Score=241.37  Aligned_cols=146  Identities=29%  Similarity=0.495  Sum_probs=125.2

Q ss_pred             CEeceEEEEEEcCCCChHHHHHHHHHhcCCCCCCCCCccccccCCEEEEeecCceEeeCCCCCCCCCCCCcccCCccCCC
Q 030603           14 KMNKGRVVMELFADVTPKTAENFRALCTGEKGIGMSGKPLHYKGSTFHRIIPNFMCQGGDFTRGNGTGGESIYGMKFADE   93 (174)
Q Consensus        14 ~t~~G~i~i~L~~~~aP~~~~nF~~l~~~~~~~~~~g~~~~y~g~~f~ri~~~~~iq~G~~~~~~~~~~~~~~~~~~~~e   93 (174)
                      .|+.|+|+|+||.+.||++|+||++||+       .|   ||+|+.|||+++++++|+|+.......+   ..+.++++|
T Consensus         5 ~T~~G~i~ieL~~~~aP~t~~nF~~l~~-------~g---~Y~g~~fhrv~~~~~iq~G~~~~~~~~~---~~~~~~~~e   71 (164)
T d1lopa_           5 HTNHGDIVIKTFDDKAPETVKNFLDYCR-------EG---FYNNTIFHRVINGFMIQGGGFEPGMKQK---ATKEPIKNE   71 (164)
T ss_dssp             EETTEEEEEEECTTTSHHHHHHHHHHHH-------TT---TTTTEECCEEETTTEEEESSEETTTEEC---CCCCCBCCC
T ss_pred             EeCCeEEEEEEcCCCCHHHHHHHHHHHH-------cc---CcCCceeeEEcCCceeeeeccccCCcCC---ccCCCcccc
Confidence            3999999999999999999999999994       33   4999999999999999999975433222   235667788


Q ss_pred             ccCCCCCCCeEEEeeec-CCCCCcceEEEEccCC--------CCCCCCceEEEEEEcChHHHHHHHhCCCCC-----CCc
Q 030603           94 NFKMKHTGPGILSMANA-GPNTNGSQFFICTQKT--------PWLDGKHVVFGKVVDGYSVIKDMEKVGSES-----GRT  159 (174)
Q Consensus        94 ~~~~~~~~~G~v~~~~~-~~~~~~s~FfItl~~~--------~~ld~~~~vfG~V~~G~~vl~~I~~~~~~~-----~~P  159 (174)
                      .....++.+|.|+|++. ++++++|||||++.+.        |++|++|+|||+|++||++|++|++++++.     ++|
T Consensus        72 ~~~~~~h~~g~l~~~~~~~~~~~~sqFfi~~~~~~~~~~~~~~~~~~~ytvFG~Vv~G~dvl~~I~~~~t~~~~~~~~~P  151 (164)
T d1lopa_          72 ANNGLKNTRGTLAMARTQAPHSATAQFFINVVDNDFLNFSGESLQGWGYCVFAEVVDGMDEVDKIKGVATGRSGMHQDVP  151 (164)
T ss_dssp             CCSSCCCCTTEEEECCCSSTTCBCSCEEEESSCCGGGSCCSSSTTTSCCCEEEEEEECHHHHHHHHTSCEEEETTEEEEE
T ss_pred             ccccccceeeEEEEeccCCCCCccceeeeeccccccccccCCCcCCCceeecCEEeccHHHHHHHHhCCcCCCCCcCCCc
Confidence            77666777999999985 5999999999999865        778899999999999999999999999876     389


Q ss_pred             ccceEEeEeeeec
Q 030603          160 SQTVVIEDCGQLA  172 (174)
Q Consensus       160 ~~~i~I~~~g~l~  172 (174)
                      .++|+|.++.+++
T Consensus       152 ~~~v~I~~v~I~e  164 (164)
T d1lopa_         152 KEDVIIESVTVSE  164 (164)
T ss_dssp             SSCCEEEEEEECC
T ss_pred             CCCeEEEEEEEeC
Confidence            9999999998764

>d1zx8a1 b.62.1.3 (A:1-124) Hypothetical protein TM1367 {Thermotoga maritima [TaxId: 2336]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: TM1367-like
domain: Hypothetical protein TM1367
species: Thermotoga maritima [TaxId: 2336]

Probab=89.67  E-value=1.4  Score=28.89  Aligned_cols=98  Identities=17%  Similarity=0.220  Sum_probs=56.2

Q ss_pred             eEEEEEEcCCCChHHHHHHHHHhcCCCCCCCCCccccccCCEEEEeecCceEeeCCCCCCCCCCCCcccCCccCCCccCC
Q 030603           18 GRVVMELFADVTPKTAENFRALCTGEKGIGMSGKPLHYKGSTFHRIIPNFMCQGGDFTRGNGTGGESIYGMKFADENFKM   97 (174)
Q Consensus        18 G~i~i~L~~~~aP~~~~nF~~l~~~~~~~~~~g~~~~y~g~~f~ri~~~~~iq~G~~~~~~~~~~~~~~~~~~~~e~~~~   97 (174)
                      +.++++|..  .|.+++.|.++.--      .+....| |..+|=-.|                      .....|....
T Consensus        10 ~~~~~~l~~--s~~ta~~i~~~LPl------~~~~~~w-G~Eiyf~~p----------------------~~l~~e~~~~   58 (124)
T d1zx8a1          10 GKCVIDLNE--EYEVVKLLKEKIPF------ESVVNTW-GEEIYFSTP----------------------VNVQKMENPR   58 (124)
T ss_dssp             CEEEEEEET--TSHHHHHHHHHCSE------EEECEES-SSEEEEECS----------------------CCCCCCSSEE
T ss_pred             eEEEEEeCC--CHHHHHHHHHhCCe------EEEHHHc-cceEEEeCC----------------------cCCCcccCcc
Confidence            788999984  58899999998621      1111123 222211111                      0111111111


Q ss_pred             CCCCCeEEEeeecCCCCCcceEEEEccCCCCCC------CCceEEEEEEcChHHHHHHHh
Q 030603           98 KHTGPGILSMANAGPNTNGSQFFICTQKTPWLD------GKHVVFGKVVDGYSVIKDMEK  151 (174)
Q Consensus        98 ~~~~~G~v~~~~~~~~~~~s~FfItl~~~~~ld------~~~~vfG~V~~G~~vl~~I~~  151 (174)
                      .....|-|+.-..+.+     +.|-.++.|.-+      ....++|++..+++.|.++..
T Consensus        59 ~~~~~GDiaYw~pg~~-----iaifyg~tp~S~~~irlas~~n~iGki~~~~~~l~~i~~  113 (124)
T d1zx8a1          59 EVVEIGDVGYWPPGKA-----LCLFFGKTPMSDDKIQPASAVNVIGKIVEGLEDLKKIKD  113 (124)
T ss_dssp             SSBCTTEEEEEGGGTE-----EEEESSCCTTCSSSBCCSSCEEEEEEEEECGGGGGGCCT
T ss_pred             cccccccEEEECCCCE-----EEEEECCccCCCCcccccCcceEeEEecCCHHHHhcCCC
Confidence            1235788877665433     777777766543      346799999999887776644