Citrus Sinensis ID: 030621

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170----
Protein Sequence
MMMINSSNRDHQELLTVREFKPKNRRIMGGGGPEEEDEEMSNKWPPWLRPLLQTSFFVQCKLHADAHKSECNMYCLDCMNGALCSLCLSLHRDHRAIQIRRSSYHDVIRVSEIQKYLDITGVQTYIINSARIVFLNERPQPRPGKGVTNTCLVCERSLLDSFTFCSLGCKVNQF
Secondary Structure (PSIPRED)
ccEEccccccccccccccccccccccccccccccHHHHHccccccccHHHHHccccccccccccccccccccEEEcccccccccHHHHHccccccHHHEEccccccEEEcccHHHHHcccccEEEEEccEEEEEEcccccccccccccccEEEEcccccccccEEEcccccccc
Secondary Structure Prediction (SSPRO)
ccEEEccccccccccccEEEccccccccccccccccHccccccccHHHHHHHHHHHccccHHccccccccccEEEEEcccccHcHHHccccccccEEEEEEEEcccEEEHHHHHHHEcccccEEEEEcccEEEEEccccccccccccccccHHHHccccccccEEEEEEEEccc
Coil and Loop (DISEMBL)
mmminssnrdhQELLTvrefkpknrrimggggpeeedeemsnkwppwlrpllqtsFFVQCKLHADAHKSECNMycldcmngalcSLCLSLHRDHRAIQIRRSSYHDVIRVSEIQKYLDITGVQTYIINSARIVflnerpqprpgkgvtntclVCERSLldsftfcslgckvnqf
Flexible Loop (DISEMBL)
mmminssnrdhqelltvrefkpknrrimggggpeeedeeMSNKWPPWLRPLLQTSFFVQCKLHADAHKSECNMYCLDCMNGALCSLCLSLHRDHRAIQIrrssyhdvirvSEIQKYLDITGVQTYIINSARIVFLnerpqprpgkgvtNTCLVCERSLLdsftfcslgckvnqf
Low Complexity Region (SEG)
MMMINSSNRDHQELLTVREFKPKNRRIMggggpeeedeeMSNKWPPWLRPLLQTSFFVQCKLHADAHKSECNMYCLDCMNGALCSLCLSLHRDHRAIQIRRSSYHDVIRVSEIQKYLDITGVQTYIINSARIVFLNERPQPRPGKGVTNTCLVCERSLLDSFTFCSLGCKVNQF
Disordered region (IsUnstruct)
*******************************************WPPWLRPLLQTSFFVQCKLHADAHKSECNMYCLDCMNGALCSLCLSLHRDHRAIQIRRSSYHDVIRVSEIQKYLDITGVQTYIINSARIVFLNER*****GKGVTNTCLVCERSLLDSFTFCSLGCKV***
Disordered Region (DISOPRED)
***********************************************LRPLLQTSFFVQCKLHADAHKSECNMYCLDCMNGALCSLCLSLHRDHRAIQIRRSSYHDVIRVSEIQKYLDITGVQTYIINSARIVF*****************LVCERSLLDSFTFCSLGCKVNQF
Disordered Region (DISEMBL)
**********HQELLTVREFKPKNRRIMG*************KWPPWLRPLLQTSFFVQCKLHADAHKSECNMYCLDCMNGALCSLCLSLHRDHRAIQIRRSSYHDVIRVSEIQKYLDITGVQTYIINSARIVFLNERPQPRPGKGVTNTCLVCERSLLDSFTFCSLGCKVNQF
Disordered Region (DISPRO)
*********DHQELLTVREFKPKNRRIMGGGGPEEE**EMSNKWPPWLRPLLQTSFFVQCKLHADAHKSECNMYCLDCMNGALCSLCLSLHRDHRAIQIRRSSYHDVIRVSEIQKYLDITGVQTYIINSARIVFLNERPQP******TNTCLVCERSLLDSFTFCSLGCKVNQF
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MMMINSSNRDHQELLTVREFKPKNRRIMGGGGPEEEDEEMSNKWPPWLRPLLQTSFFVQCKLHADAHKSECNMYCLDCMNGALCSLCLSLHRDHRAIQIRRSSYHDVIRVSEIQKYLDITGVQTYIINSARIVFLNERPQPRPGKGVTNTCLVCERSLLDSFTFCSLGCKVNQF
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	174
225427189	262	PREDICTED: uncharacterized protein LOC10	0.902	0.599	0.845	6e-77
110681464	233	putative zinc-binding protein [Platanus	0.902	0.673	0.839	2e-76
147833550	244	hypothetical protein VITISV_016796 [Viti	0.873	0.622	0.858	2e-76
356498156	259	PREDICTED: uncharacterized protein LOC10	0.873	0.586	0.851	4e-76
356531421	236	PREDICTED: uncharacterized protein LOC10	0.873	0.644	0.852	6e-76
356496400	236	PREDICTED: uncharacterized protein LOC10	0.873	0.644	0.852	8e-76
357517015	235	hypothetical protein MTR_8g066820 [Medic	0.873	0.646	0.846	2e-75
357485195	240	hypothetical protein MTR_5g030130 [Medic	0.908	0.658	0.796	4e-75
217072374	240	unknown [Medicago truncatula] gi|3885098	0.908	0.658	0.790	5e-75
224124108	240	predicted protein [Populus trichocarpa]	0.948	0.687	0.801	8e-75

>gi|225427189|ref|XP_002277964.1| PREDICTED: uncharacterized protein LOC100250554 [Vitis vinifera] gi|297742091|emb|CBI33878.3| unnamed protein product [Vitis vinifera]

 Score =  291 bits (746), Expect = 6e-77,   Method: Compositional matrix adjust.
 Identities = 137/162 (84%), Positives = 147/162 (90%), Gaps = 5/162 (3%)

Query: 10  DHQELLTVREFKPKNRRIMGGGGPEEEDEEMSNKWPPWLRPLLQTSFFVQCKLHADAHKS 69
           D+QE   VRE KPK+RRIMG GGP+EED    N+WPPWL+PLL+ SFFVQCKLHAD+HKS
Sbjct: 29  DNQES-AVREIKPKSRRIMGAGGPDEED----NRWPPWLKPLLRESFFVQCKLHADSHKS 83

Query: 70  ECNMYCLDCMNGALCSLCLSLHRDHRAIQIRRSSYHDVIRVSEIQKYLDITGVQTYIINS 129
           ECNMYCLDCMNGALCSLCL  H+DHRAIQIRRSSYHDVIRVSEIQK LDITGVQTYIINS
Sbjct: 84  ECNMYCLDCMNGALCSLCLGYHKDHRAIQIRRSSYHDVIRVSEIQKVLDITGVQTYIINS 143

Query: 130 ARIVFLNERPQPRPGKGVTNTCLVCERSLLDSFTFCSLGCKV 171
           AR+VFLNERPQPRPGKGVTNTC VCERSLLDSF FCSLGCK+
Sbjct: 144 ARVVFLNERPQPRPGKGVTNTCEVCERSLLDSFRFCSLGCKI 185

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|110681464|emb|CAL25342.1| putative zinc-binding protein [Platanus x acerifolia]

 Score =  290 bits (741), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 136/162 (83%), Positives = 146/162 (90%), Gaps = 5/162 (3%)

Query: 10  DHQELLTVREFKPKNRRIMGGGGPEEEDEEMSNKWPPWLRPLLQTSFFVQCKLHADAHKS 69
           D+QE  TV+E KPK+RRIMG GGPE+ED    NKWPPWL PLLQT FFVQCK HAD+HK 
Sbjct: 4   DNQEP-TVKEIKPKSRRIMGAGGPEDED----NKWPPWLSPLLQTRFFVQCKFHADSHKC 58

Query: 70  ECNMYCLDCMNGALCSLCLSLHRDHRAIQIRRSSYHDVIRVSEIQKYLDITGVQTYIINS 129
           ECNMYCLDCMNGALCSLCLS H+DHRAIQIRRSSYHDVIRVSEIQK LDI+GVQTY+INS
Sbjct: 59  ECNMYCLDCMNGALCSLCLSYHKDHRAIQIRRSSYHDVIRVSEIQKVLDISGVQTYVINS 118

Query: 130 ARIVFLNERPQPRPGKGVTNTCLVCERSLLDSFTFCSLGCKV 171
           AR+VFLNERPQPRPGKGVTNTC VCERSLLDSF FCSLGCK+
Sbjct: 119 ARVVFLNERPQPRPGKGVTNTCEVCERSLLDSFRFCSLGCKI 160

Source: Platanus x acerifolia

Species: Platanus x acerifolia

Genus: Platanus

Family: Platanaceae

Order: Proteales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147833550|emb|CAN63851.1| hypothetical protein VITISV_016796 [Vitis vinifera]

 Score =  290 bits (741), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 134/156 (85%), Positives = 143/156 (91%), Gaps = 4/156 (2%)

Query: 16  TVREFKPKNRRIMGGGGPEEEDEEMSNKWPPWLRPLLQTSFFVQCKLHADAHKSECNMYC 75
            VRE KPK+RRIMG GGP+EED    N+WPPWL+PLL+ SFFVQCKLHAD+HKSECNMYC
Sbjct: 16  AVREIKPKSRRIMGAGGPDEED----NRWPPWLKPLLRESFFVQCKLHADSHKSECNMYC 71

Query: 76  LDCMNGALCSLCLSLHRDHRAIQIRRSSYHDVIRVSEIQKYLDITGVQTYIINSARIVFL 135
           LDCMNGALCSLCL  H+DHRAIQIRRSSYHDVIRVSEIQK LDITGVQTYIINSAR+VFL
Sbjct: 72  LDCMNGALCSLCLGYHKDHRAIQIRRSSYHDVIRVSEIQKVLDITGVQTYIINSARVVFL 131

Query: 136 NERPQPRPGKGVTNTCLVCERSLLDSFTFCSLGCKV 171
           NERPQPRPGKGVTNTC VCERSLLDSF FCSLGCK+
Sbjct: 132 NERPQPRPGKGVTNTCEVCERSLLDSFRFCSLGCKI 167

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356498156|ref|XP_003517919.1| PREDICTED: uncharacterized protein LOC100777527 [Glycine max]

 Score =  288 bits (738), Expect = 4e-76,   Method: Compositional matrix adjust.
 Identities = 132/155 (85%), Positives = 145/155 (93%), Gaps = 3/155 (1%)

Query: 17  VREFKPKNRRIMGGGGPEEEDEEMSNKWPPWLRPLLQTSFFVQCKLHADAHKSECNMYCL 76
           VRE KPKNRRIMG GGP++ED   +N+WPPWL+PLL+ SFFVQCKLHAD+HKSECNMYCL
Sbjct: 39  VREIKPKNRRIMGAGGPDDED---NNRWPPWLKPLLKESFFVQCKLHADSHKSECNMYCL 95

Query: 77  DCMNGALCSLCLSLHRDHRAIQIRRSSYHDVIRVSEIQKYLDITGVQTYIINSARIVFLN 136
           DCMNGALCSLCL+ H+DHRAIQIRRSSYHDVIRV+EIQK LDITGVQTYIINSAR+VFLN
Sbjct: 96  DCMNGALCSLCLAYHKDHRAIQIRRSSYHDVIRVNEIQKVLDITGVQTYIINSARVVFLN 155

Query: 137 ERPQPRPGKGVTNTCLVCERSLLDSFTFCSLGCKV 171
           ERPQPRPGKGVTNTC VCERSLLDS+ FCSLGCK+
Sbjct: 156 ERPQPRPGKGVTNTCEVCERSLLDSYRFCSLGCKI 190

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356531421|ref|XP_003534276.1| PREDICTED: uncharacterized protein LOC100791221 [Glycine max]

 Score =  288 bits (737), Expect = 6e-76,   Method: Compositional matrix adjust.
 Identities = 133/156 (85%), Positives = 144/156 (92%), Gaps = 4/156 (2%)

Query: 16  TVREFKPKNRRIMGGGGPEEEDEEMSNKWPPWLRPLLQTSFFVQCKLHADAHKSECNMYC 75
           TVRE KPKNRRIMG GGP+++D    N+WPPWL+PLL+ SFFVQCKLHAD+HKSECNMYC
Sbjct: 9   TVREIKPKNRRIMGAGGPDDDD----NRWPPWLKPLLKESFFVQCKLHADSHKSECNMYC 64

Query: 76  LDCMNGALCSLCLSLHRDHRAIQIRRSSYHDVIRVSEIQKYLDITGVQTYIINSARIVFL 135
           LDCMNG LCSLCL+ H+DHRAIQIRRSSYHDVIRVSEIQK LDITGVQTYIINSAR+VFL
Sbjct: 65  LDCMNGPLCSLCLAHHKDHRAIQIRRSSYHDVIRVSEIQKVLDITGVQTYIINSARVVFL 124

Query: 136 NERPQPRPGKGVTNTCLVCERSLLDSFTFCSLGCKV 171
           NERPQPRPGKGVTNTC VCERSLLDSF FCSLGCK+
Sbjct: 125 NERPQPRPGKGVTNTCEVCERSLLDSFRFCSLGCKI 160

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356496400|ref|XP_003517056.1| PREDICTED: uncharacterized protein LOC100797900 [Glycine max]

 Score =  288 bits (736), Expect = 8e-76,   Method: Compositional matrix adjust.
 Identities = 133/156 (85%), Positives = 143/156 (91%), Gaps = 4/156 (2%)

Query: 16  TVREFKPKNRRIMGGGGPEEEDEEMSNKWPPWLRPLLQTSFFVQCKLHADAHKSECNMYC 75
            VRE KPKNRRIMG GGP++ED    N+WPPWL+PLL+ SFFVQCKLHAD+HKSECNMYC
Sbjct: 9   AVREIKPKNRRIMGAGGPDDED----NRWPPWLKPLLKESFFVQCKLHADSHKSECNMYC 64

Query: 76  LDCMNGALCSLCLSLHRDHRAIQIRRSSYHDVIRVSEIQKYLDITGVQTYIINSARIVFL 135
           LDCMNG LCSLCL+ H+DHRAIQIRRSSYHDVIRVSEIQK LDITGVQTYIINSAR+VFL
Sbjct: 65  LDCMNGPLCSLCLAHHKDHRAIQIRRSSYHDVIRVSEIQKVLDITGVQTYIINSARVVFL 124

Query: 136 NERPQPRPGKGVTNTCLVCERSLLDSFTFCSLGCKV 171
           NERPQPRPGKGVTNTC VCERSLLDSF FCSLGCK+
Sbjct: 125 NERPQPRPGKGVTNTCEVCERSLLDSFRFCSLGCKI 160

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357517015|ref|XP_003628796.1| hypothetical protein MTR_8g066820 [Medicago truncatula] gi|355522818|gb|AET03272.1| hypothetical protein MTR_8g066820 [Medicago truncatula]

 Score =  286 bits (733), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 132/156 (84%), Positives = 144/156 (92%), Gaps = 4/156 (2%)

Query: 16  TVREFKPKNRRIMGGGGPEEEDEEMSNKWPPWLRPLLQTSFFVQCKLHADAHKSECNMYC 75
           TVRE KPKNRRIMG GGP++E+    N+WPPWL+PLL+  FFVQCKLHAD+HKSECNMYC
Sbjct: 8   TVREIKPKNRRIMGAGGPDDEE----NRWPPWLKPLLKERFFVQCKLHADSHKSECNMYC 63

Query: 76  LDCMNGALCSLCLSLHRDHRAIQIRRSSYHDVIRVSEIQKYLDITGVQTYIINSARIVFL 135
           LDCMNGALCSLCL+ H+DHRAIQIRRSSYHDVIRV+EIQK LDITGVQTYIINSAR+VFL
Sbjct: 64  LDCMNGALCSLCLNYHKDHRAIQIRRSSYHDVIRVNEIQKVLDITGVQTYIINSARVVFL 123

Query: 136 NERPQPRPGKGVTNTCLVCERSLLDSFTFCSLGCKV 171
           NERPQPRPGKGVTNTC VCERSLLDSF FCSLGCK+
Sbjct: 124 NERPQPRPGKGVTNTCEVCERSLLDSFRFCSLGCKI 159

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357485195|ref|XP_003612885.1| hypothetical protein MTR_5g030130 [Medicago truncatula] gi|355514220|gb|AES95843.1| hypothetical protein MTR_5g030130 [Medicago truncatula]

 Score =  285 bits (730), Expect = 4e-75,   Method: Compositional matrix adjust.
 Identities = 129/162 (79%), Positives = 147/162 (90%), Gaps = 4/162 (2%)

Query: 10  DHQELLTVREFKPKNRRIMGGGGPEEEDEEMSNKWPPWLRPLLQTSFFVQCKLHADAHKS 69
           ++QE  +VRE KPKNRRIMG GGP+++D    N+WPPWL+PLL+ +FFVQCK+HAD+HKS
Sbjct: 4   ENQENTSVREIKPKNRRIMGAGGPDDDD----NRWPPWLKPLLKEAFFVQCKIHADSHKS 59

Query: 70  ECNMYCLDCMNGALCSLCLSLHRDHRAIQIRRSSYHDVIRVSEIQKYLDITGVQTYIINS 129
           ECNMYCLDCMNG LCSLCL+ H+DHR IQIRRSSYHDVIRV+EIQK+LDI GVQTYIINS
Sbjct: 60  ECNMYCLDCMNGPLCSLCLAYHKDHRYIQIRRSSYHDVIRVNEIQKHLDIAGVQTYIINS 119

Query: 130 ARIVFLNERPQPRPGKGVTNTCLVCERSLLDSFTFCSLGCKV 171
           AR+VFLNERPQPRPGKGVTNTC VCERSLLDSF FCSLGCK+
Sbjct: 120 ARVVFLNERPQPRPGKGVTNTCEVCERSLLDSFRFCSLGCKI 161

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|217072374|gb|ACJ84547.1| unknown [Medicago truncatula] gi|388509820|gb|AFK42976.1| unknown [Medicago truncatula]

 Score =  285 bits (729), Expect = 5e-75,   Method: Compositional matrix adjust.
 Identities = 128/162 (79%), Positives = 147/162 (90%), Gaps = 4/162 (2%)

Query: 10  DHQELLTVREFKPKNRRIMGGGGPEEEDEEMSNKWPPWLRPLLQTSFFVQCKLHADAHKS 69
           ++QE  +VRE KPKNRRIMG GGP+++D    N+WPPWL+PLL+ +FFVQCK+HAD+HKS
Sbjct: 4   ENQENTSVREIKPKNRRIMGAGGPDDDD----NRWPPWLKPLLKEAFFVQCKIHADSHKS 59

Query: 70  ECNMYCLDCMNGALCSLCLSLHRDHRAIQIRRSSYHDVIRVSEIQKYLDITGVQTYIINS 129
           ECNMYCLDCMNG LCSLCL+ H+DHR IQIRRSSYHDVIRV+EIQK+LDI GVQTY+INS
Sbjct: 60  ECNMYCLDCMNGPLCSLCLAYHKDHRYIQIRRSSYHDVIRVNEIQKHLDIAGVQTYVINS 119

Query: 130 ARIVFLNERPQPRPGKGVTNTCLVCERSLLDSFTFCSLGCKV 171
           AR+VFLNERPQPRPGKGVTNTC VCERSLLDSF FCSLGCK+
Sbjct: 120 ARVVFLNERPQPRPGKGVTNTCEVCERSLLDSFRFCSLGCKI 161

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224124108|ref|XP_002319247.1| predicted protein [Populus trichocarpa] gi|222857623|gb|EEE95170.1| predicted protein [Populus trichocarpa]

 Score =  284 bits (727), Expect = 8e-75,   Method: Compositional matrix adjust.
 Identities = 137/171 (80%), Positives = 147/171 (85%), Gaps = 6/171 (3%)

Query: 2   MMINSSNRDHQELLTVREFKPKNRRIMGGGGPEEEDEEMSN-KWPPWLRPLLQTSFFVQC 60
           M+IN      QE  TVRE KP  RRIMGGG P+  D+   + KWPPWL  LLQTSFFVQC
Sbjct: 1   MIIND-----QESTTVREIKPNIRRIMGGGSPDYVDDHKEDIKWPPWLHTLLQTSFFVQC 55

Query: 61  KLHADAHKSECNMYCLDCMNGALCSLCLSLHRDHRAIQIRRSSYHDVIRVSEIQKYLDIT 120
           KLH+DAHKSECNMYCLDCMNGALCS+CLS H+DHRAIQIRRSSYHDVIRVSEIQKYLDIT
Sbjct: 56  KLHSDAHKSECNMYCLDCMNGALCSVCLSHHKDHRAIQIRRSSYHDVIRVSEIQKYLDIT 115

Query: 121 GVQTYIINSARIVFLNERPQPRPGKGVTNTCLVCERSLLDSFTFCSLGCKV 171
            VQTYIINSA+IVFLNERPQPRPGKGVTNTC VCERSLLDSF+FCSL CK+
Sbjct: 116 EVQTYIINSAKIVFLNERPQPRPGKGVTNTCHVCERSLLDSFSFCSLACKI 166

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	174
TAIR|locus:2141070	227	AT4G17900 [Arabidopsis thalian	0.873	0.669	0.732	2.3e-62
TAIR|locus:2035614	213	AT1G32700 [Arabidopsis thalian	0.758	0.619	0.812	5.7e-59
TAIR|locus:2011721	245	AT1G76590 [Arabidopsis thalian	0.729	0.518	0.716	1.2e-49
TAIR|locus:2037405	246	AT1G21000 [Arabidopsis thalian	0.729	0.516	0.700	1.5e-49
TAIR|locus:2178580	226	AT5G46710 [Arabidopsis thalian	0.827	0.637	0.587	6e-48
TAIR|locus:2009879	216	AT1G43000 [Arabidopsis thalian	0.729	0.587	0.622	3.1e-44
TAIR|locus:2057867	189	AT2G27930 [Arabidopsis thalian	0.729	0.671	0.562	1.3e-36
TAIR|locus:1009023224	256	AT2G12646 "AT2G12646" [Arabido	0.729	0.496	0.492	4.2e-31
TAIR|locus:2101881	245	AT3G60670 [Arabidopsis thalian	0.752	0.534	0.446	9.1e-29
TAIR|locus:2015761	243	AT1G31040 [Arabidopsis thalian	0.747	0.534	0.451	1.9e-28

TAIR|locus:2141070 AT4G17900 [Arabidopsis thaliana (taxid:3702)]

 Score = 637 (229.3 bits), Expect = 2.3e-62, P = 2.3e-62
 Identities = 115/157 (73%), Positives = 129/157 (82%)

Query:    16 TVREFKPKNRRIMXXXXXXXXXXXMSNKWPPWLRPLLQTSFFVQCKLHADAHKSECNMYC 75
             T+RE KPKNRRIM             N+WPPWL+PLL+  FFV CK H D+HKSECNMYC
Sbjct:     9 TIREIKPKNRRIMGAGGPEEE----ENRWPPWLKPLLKEQFFVHCKFHGDSHKSECNMYC 64

Query:    76 LDCMNGALCSLCLSLHRDHRAIQIRRSSYHDVIRVSEIQKYLDITGVQTYIINSARIVFL 135
             LDC NG LCSLCL+ H+DHR IQIRRSSYHDVIRV+EIQKYLDI G+QTY+INSA++VFL
Sbjct:    65 LDCTNGPLCSLCLAHHKDHRTIQIRRSSYHDVIRVNEIQKYLDIGGIQTYVINSAKVVFL 124

Query:   136 NERPQPRPGKGVTNTCLVCERSLLD-SFTFCSLGCKV 171
             NERPQPRPGKGVTNTC VC RSL+D SF FCSLGCK+
Sbjct:   125 NERPQPRPGKGVTNTCKVCYRSLVDDSFRFCSLGCKI 161

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2035614 AT1G32700 [Arabidopsis thaliana (taxid:3702)]

 Score = 605 (218.0 bits), Expect = 5.7e-59, P = 5.7e-59
 Identities = 108/133 (81%), Positives = 121/133 (90%)

Query:    41 SNK-WPPWLRPLLQTSFFVQCKLHADAHKSECNMYCLDCMNGALCSLCLSLHRDHRAIQI 99
             +NK +P WL+PLL+  FFVQCKLHAD+HKSECNMYCLDC NG LCSLCLS H+DH AIQI
Sbjct:     7 TNKTYPHWLKPLLREKFFVQCKLHADSHKSECNMYCLDCTNGPLCSLCLSFHKDHHAIQI 66

Query:   100 RRSSYHDVIRVSEIQKYLDITGVQTYIINSARIVFLNERPQPRPGKGVTNTCLVCERSLL 159
             RRSSYHDVIRVSEIQK+LDITGVQTY+INSA++VFLNERPQPRPGKGV NTC VC RSL+
Sbjct:    67 RRSSYHDVIRVSEIQKFLDITGVQTYVINSAKVVFLNERPQPRPGKGVINTCEVCYRSLV 126

Query:   160 DSFTFCSLGCKVN 172
             DSF FCSLGCK++
Sbjct:   127 DSFRFCSLGCKIS 139

GO:0005634 "nucleus" evidence=ISM

TAIR|locus:2011721 AT1G76590 [Arabidopsis thaliana (taxid:3702)]

 Score = 517 (187.1 bits), Expect = 1.2e-49, P = 1.2e-49
 Identities = 91/127 (71%), Positives = 110/127 (86%)

Query:    45 PPWLRPLLQTSFFVQCKLHADAHKSECNMYCLDCMNGALCSLCLSLHRDHRAIQIRRSSY 104
             PPWL P+L+ ++F+ C +HA ++KSECNM+CLDC + A CS CL  HR+HR +QIRRSSY
Sbjct:    18 PPWLIPMLRANYFIPCSIHAASNKSECNMFCLDCSSEAFCSYCLLNHRNHRVLQIRRSSY 77

Query:   105 HDVIRVSEIQKYLDITGVQTYIINSARIVFLNERPQPRPGKGVTNTCLVCERSLLDSFTF 164
             H+V+RV+EIQKY+DI+ VQTYIINSARIVFLNERPQPR GKGVTNTC +C RSLLDSF F
Sbjct:    78 HNVVRVNEIQKYIDISCVQTYIINSARIVFLNERPQPRIGKGVTNTCEICCRSLLDSFRF 137

Query:   165 CSLGCKV 171
             CSLGCK+
Sbjct:   138 CSLGCKL 144

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0010286 "heat acclimation" evidence=RCA

TAIR|locus:2037405 AT1G21000 [Arabidopsis thaliana (taxid:3702)]

 Score = 516 (186.7 bits), Expect = 1.5e-49, P = 1.5e-49
 Identities = 89/127 (70%), Positives = 108/127 (85%)

Query:    45 PPWLRPLLQTSFFVQCKLHADAHKSECNMYCLDCMNGALCSLCLSLHRDHRAIQIRRSSY 104
             PPWL P+L+ S+FV C +H D++K+ECN++CLDC   A CS CL  H+DHR +QIRRSSY
Sbjct:    16 PPWLMPMLRGSYFVPCSIHVDSNKNECNLFCLDCAGNAFCSYCLVKHKDHRVVQIRRSSY 75

Query:   105 HDVIRVSEIQKYLDITGVQTYIINSARIVFLNERPQPRPGKGVTNTCLVCERSLLDSFTF 164
             H+V+RV+EIQK++DI  VQTYIINSA+IVFLNERPQPR GKGVTNTC +C RSLLDSF F
Sbjct:    76 HNVVRVNEIQKFIDIACVQTYIINSAKIVFLNERPQPRIGKGVTNTCEICCRSLLDSFRF 135

Query:   165 CSLGCKV 171
             CSLGCK+
Sbjct:   136 CSLGCKL 142

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2178580 AT5G46710 [Arabidopsis thaliana (taxid:3702)]

 Score = 501 (181.4 bits), Expect = 6.0e-48, P = 6.0e-48
 Identities = 91/155 (58%), Positives = 111/155 (71%)

Query:    18 REFKPKNRRIMXXXXXXXXXXXMSNKWPPWLRPLLQTSFFVQCKLHADAHKSECNMYCLD 77
             RE KPKNRR M             N+WP WL+PLL   FF QCK H    ++EC MYCLD
Sbjct:    11 REIKPKNRRFMEG----------ENQWPIWLKPLLNQHFFAQCKFHGHLPRTECKMYCLD 60

Query:    78 CMNGALCSLCLSLHRDHRAIQIRRSSYHDVIRVSEIQKYLDITGVQTYIINSARIVFLNE 137
             C N + CSLCLS H +HR IQIR SSYH+V +V EIQKYLDI+ +QTY+INS++++FLNE
Sbjct:    61 CTNDSFCSLCLSEHENHRTIQIRISSYHNVTKVDEIQKYLDISSIQTYVINSSKVLFLNE 120

Query:   138 RPQPRPGKGVTNTCLVCERSLLDS-FTFCSLGCKV 171
             RPQ +PGKG TN C+VC R L ++ F FCS+GCKV
Sbjct:   121 RPQSKPGKGFTNACMVCYRGLAENCFRFCSIGCKV 155

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2009879 AT1G43000 [Arabidopsis thaliana (taxid:3702)]

 Score = 466 (169.1 bits), Expect = 3.1e-44, P = 3.1e-44
 Identities = 79/127 (62%), Positives = 100/127 (78%)

Query:    45 PPWLRPLLQTSFFVQCKLHADAHKSECNMYCLDCMNGALCSLCLSLHRDHRAIQIRRSSY 104
             PPWL P+L+  +FV C +H+ + KSECN++CLDC   A CS CL+ HR HR IQIRRSSY
Sbjct:     9 PPWLTPMLRADYFVTCSIHSQSSKSECNLFCLDCSGNAFCSSCLAHHRTHRVIQIRRSSY 68

Query:   105 HDVIRVSEIQKYLDITGVQTYIINSARIVFLNERPQPRPGKGVTNTCLVCERSLLDSFTF 164
             H+V+RVSEIQK++DI+ +QTY+INSA+I FLN RPQ R GK +  TC +C R+LLDSF F
Sbjct:    69 HNVVRVSEIQKHIDISCIQTYVINSAKIFFLNARPQCRTGKSLNKTCQICSRNLLDSFLF 128

Query:   165 CSLGCKV 171
             CSL CK+
Sbjct:   129 CSLACKL 135

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2057867 AT2G27930 [Arabidopsis thaliana (taxid:3702)]

 Score = 394 (143.8 bits), Expect = 1.3e-36, P = 1.3e-36
 Identities = 77/137 (56%), Positives = 93/137 (67%)

Query:    45 PPWLRPLLQTSFFVQCKLHADAHKSECNMYCLDCMNGALCSLCLS-LHRDHRAIQIRRSS 103
             P WL  LL+T+FF  C  H +  ++ECNM+CL C N A C  C S  H DH  +QIRRSS
Sbjct:     4 PKWLEGLLRTNFFSICPRHRETPRNECNMFCLSCQNAAFCFYCRSSFHIDHPVLQIRRSS 63

Query:   104 YHDVIRVSEIQKYLDITGVQTYIINSARIVFLNERPQPRPGK-GVTNT--------CLVC 154
             YHDV+RVSEI+  LDI GVQTY+INSAR++FLNERPQP+    G  ++        C  C
Sbjct:    64 YHDVVRVSEIENALDIRGVQTYVINSARVLFLNERPQPKNSSHGAASSTPKTMSYFCETC 123

Query:   155 ERSLLDSFTFCSLGCKV 171
              R+LLD F FCSLGCKV
Sbjct:   124 CRTLLDPFRFCSLGCKV 140

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:1009023224 AT2G12646 "AT2G12646" [Arabidopsis thaliana (taxid:3702)]

 Score = 342 (125.4 bits), Expect = 4.2e-31, P = 4.2e-31
 Identities = 63/128 (49%), Positives = 83/128 (64%)

Query:    45 PPWLRPLLQTSFFVQCKLHADAHKSECNMYCLDCMNGALCSLCLSLHRDHRAIQIRRSSY 104
             P WL  L    FFV C  H  A K+E N+ CLDC   +LC  C+  HR HR +Q+RR  Y
Sbjct:     6 PAWLDALYAEKFFVGCPYHETAKKNERNVCCLDCCT-SLCPHCVPSHRFHRLLQVRRYVY 64

Query:   105 HDVIRVSEIQKYLDITGVQTYIINSARIVFLNERPQPRPGKGVTNTCLVCERSLLDSFTF 164
             HDV+R+ ++QK +D + VQ Y INSA++VF+ +RPQ R  KG  N C  C+RSL + +  
Sbjct:    65 HDVVRLEDLQKLIDCSNVQAYTINSAKVVFIKKRPQNRQFKGAGNYCTSCDRSLQEPYIH 124

Query:   165 CSLGCKVN 172
             CSLGCKV+
Sbjct:   125 CSLGCKVD 132

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2101881 AT3G60670 [Arabidopsis thaliana (taxid:3702)]

 Score = 320 (117.7 bits), Expect = 9.1e-29, P = 9.1e-29
 Identities = 59/132 (44%), Positives = 82/132 (62%)

Query:    41 SNKWPPWLRPLLQTSFFVQCKLHADAHKSECNMYCLDCMNGALCSLCLSLHRDHRAIQIR 100
             S ++P WL  LL+  FF  C  H D  K+E N+ C+DC    +C  CLS H  HR +QIR
Sbjct:     3 SGEFPAWLEVLLKDKFFNACLDHEDDKKNEKNILCIDCCL-TICPHCLSSHTSHRLLQIR 61

Query:   101 RSSYHDVIRVSEIQKYLDITGVQTYIINSARIVFLNERPQPRPGKGVTNTCLVCERSLLD 160
             R  Y DV+RV +  K +D + +Q Y  NS+++VF+NERPQ R  +G  N C+ C+RSL  
Sbjct:    62 RYVYRDVLRVEDGSKLMDCSLIQPYTTNSSKVVFINERPQSRQFRGSGNICITCDRSLQS 121

Query:   161 SFTFCSLGCKVN 172
              + FC L CK++
Sbjct:   122 PYLFCCLSCKIS 133

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0008270 "zinc ion binding" evidence=ISS

TAIR|locus:2015761 AT1G31040 [Arabidopsis thaliana (taxid:3702)]

 Score = 317 (116.6 bits), Expect = 1.9e-28, P = 1.9e-28
 Identities = 60/133 (45%), Positives = 85/133 (63%)

Query:    40 MSNKWPPWLRPLLQTSFFVQCKLHADAHKSECNMYCLDCMNGALCSLCLSLHRDHRAIQI 99
             M+ K P WL  L+  +FF  C +H    KSE N++CL C   ++C  CL  HR H  +Q+
Sbjct:    15 MATK-PAWLEGLMAETFFSSCGIHETRRKSEKNVFCLLCCL-SVCPHCLPSHRSHPLLQV 72

Query:   100 RRSSYHDVIRVSEIQKYLDITGVQTYIINSARIVFLNERPQPRPGKGVTNTCLVCERSLL 159
             RR  YHDV+R+S+++K +D + VQ Y IN A+++FLN+R Q R  K  +N C  C+R L 
Sbjct:    73 RRYVYHDVVRLSDLEKLIDCSYVQPYTINGAKVIFLNQRQQSR-AKVSSNVCFTCDRILQ 131

Query:   160 DSFTFCSLGCKVN 172
             + F FCSL CKV+
Sbjct:   132 EPFHFCSLSCKVD 144

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	174
pfam04640	72	pfam04640, PLATZ, PLATZ transcription factor	6e-44

>gnl|CDD|191051 pfam04640, PLATZ, PLATZ transcription factor

 Score =  139 bits (352), Expect = 6e-44
 Identities = 55/72 (76%), Positives = 63/72 (87%)

Query: 100 RRSSYHDVIRVSEIQKYLDITGVQTYIINSARIVFLNERPQPRPGKGVTNTCLVCERSLL 159
           RRSSYHDV+RVS+IQK +DI+GVQTY+INSA++VFLNERPQ RPGKG  N C  C+RSLL
Sbjct: 1   RRSSYHDVVRVSDIQKLIDISGVQTYVINSAKVVFLNERPQSRPGKGSGNICETCDRSLL 60

Query: 160 DSFTFCSLGCKV 171
           D F FCSLGCKV
Sbjct: 61  DPFRFCSLGCKV 72

Plant AT-rich sequence and zinc-binding proteins (PLATZ) are zinc dependant DNA binding proteins. They bind to AT rich sequences and functions in transcriptional repression. Length = 72

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	174
PF04640	72	PLATZ: PLATZ transcription factor; InterPro: IPR00	100.0
PF00643	42	zf-B_box: B-box zinc finger; InterPro: IPR000315 Z	96.74
cd00021	39	BBOX B-Box-type zinc finger; zinc binding domain (	95.37
smart00336	42	BBOX B-Box-type zinc finger.	94.51
PF12855	43	Ecl1: Life-span regulatory factor; InterPro: IPR02	91.72
PF03884	57	DUF329: Domain of unknown function (DUF329); Inter	87.66
PRK01343	57	zinc-binding protein; Provisional	81.95

>PF04640 PLATZ: PLATZ transcription factor; InterPro: IPR006734 This family includes a conserved region in several uncharacterised plant proteins

Probab=100.00  E-value=2.5e-41  Score=243.18  Aligned_cols=72  Identities=67%  Similarity=1.158  Sum_probs=71.1

Q ss_pred             EeccccceeeecchhhhhcccceeeEEecCcEEEEeeCCCCCCCCCCCCccccccccccCCCCeeeeccccc
Q 030621          100 RRSSYHDVIRVSEIQKYLDITGVQTYIINSARIVFLNERPQPRPGKGVTNTCLVCERSLLDSFTFCSLGCKV  171 (174)
Q Consensus       100 RRssYhdVVRv~DIqkl~D~S~IQtYvINsakVVFLn~RPq~r~~kg~~~~C~~C~R~L~d~~rFCSL~CKv  171 (174)
                      |||||||||||+||||+||||+||||+|||+||||||+|||+++++++++.|++|+|+|+|+|+||||+|||
T Consensus         1 Rr~sY~dVVrv~di~kl~D~s~IQtY~iNs~kVVfLn~Rpq~~~~~~~~~~C~~C~R~L~d~~~fCSl~CKv   72 (72)
T PF04640_consen    1 RRYSYHDVVRVSDIQKLLDCSGIQTYVINSAKVVFLNPRPQSRPSKGSGNICETCHRSLQDPYRFCSLSCKV   72 (72)
T ss_pred             CcccccceEEHHHhHhhccccccEEEEeCCceEEEEccCCcCCCCCCCCCccCCCCCCCCCCCeEEeeeEEC
Confidence            899999999999999999999999999999999999999999999999999999999999999999999997

>PF00643 zf-B_box: B-box zinc finger; InterPro: IPR000315 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=96.74  E-value=0.00039  Score=43.64  Aligned_cols=37  Identities=32%  Similarity=0.820  Sum_probs=29.5

Q ss_pred             cccccccCCCCCcceecccCCCCcCCccccc-CCCCCceeEE
Q 030621           59 QCKLHADAHKSECNMYCLDCMNGALCSLCLS-LHRDHRAIQI   99 (174)
Q Consensus        59 ~C~~H~~~~knE~N~FCldC~~~~~C~~Cl~-~H~~HrvlQI   99 (174)
                      .|..|..   .+..+||.+|. .++|..|.. .|++|.++.|
T Consensus         5 ~C~~H~~---~~~~~~C~~C~-~~~C~~C~~~~H~~H~~~~i   42 (42)
T PF00643_consen    5 KCPEHPE---EPLSLFCEDCN-EPLCSECTVSGHKGHKIVPI   42 (42)
T ss_dssp             B-SSTTT---SBEEEEETTTT-EEEEHHHHHTSTTTSEEEEC
T ss_pred             cCccCCc---cceEEEecCCC-CccCccCCCCCCCCCEEeEC
Confidence            5888864   34889999998 899999987 4999987754

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents B-box-type zinc finger domains, which are around 40 residues in length. B-box zinc fingers can be divided into two groups, where types 1 and 2 B-box domains differ in their consensus sequence and in the spacing of the 7-8 zinc-binding residues. Several proteins contain both types 1 and 2 B-boxes, suggesting some level of cooperativity between these two domains. B-box domains are found in over 1500 proteins from a variety of organisms. They are found in TRIM (tripartite motif) proteins that consist of an N-terminal RING finger (originally called an A-box), followed by 1-2 B-box domains and a coiled-coil domain (also called RBCC for Ring, B-box, Coiled-Coil). TRIM proteins contain a type 2 B-box domain, and may also contain a type 1 B-box. In proteins that do not contain RING or coiled-coil domains, the B-box domain is primarily type 2. Many type 2 B-box proteins are involved in ubiquitinylation. Proteins containing a B-box zinc finger domain include transcription factors, ribonucleoproteins and proto-oncoproteins; for example, MID1, MID2, TRIM9, TNL, TRIM36, TRIM63, TRIFIC, NCL1 and CONSTANS-like proteins []. The microtubule-associated E3 ligase MID1 (6.3.2 from EC) contains a type 1 B-box zinc finger domain. MID1 specifically binds Alpha-4, which in turn recruits the catalytic subunit of phosphatase 2A (PP2Ac). This complex is required for targeting of PP2Ac for proteasome-mediated degradation. The MID1 B-box coordinates two zinc ions and adopts a beta/beta/alpha cross-brace structure similar to that of ZZ, PHD, RING and FYVE zinc fingers [, ]. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 3DDT_B 2D8U_A 3Q1D_A 2EGM_A 2YVR_B 2DJA_A 2DQ5_A 2JUN_A 2YRG_A 2DID_A ....

>cd00021 BBOX B-Box-type zinc finger; zinc binding domain (CHC3H2); often present in combination with other motifs, like RING zinc finger, NHL motif, coiled-coil or RFP domain in functionally unrelated proteins, most likely mediating protein-protein interaction

Probab=95.37  E-value=0.01  Score=35.99  Aligned_cols=36  Identities=25%  Similarity=0.588  Sum_probs=27.7

Q ss_pred             cccccccCCCCCcceecccCCCCcCCccccc-CCCCCceeE
Q 030621           59 QCKLHADAHKSECNMYCLDCMNGALCSLCLS-LHRDHRAIQ   98 (174)
Q Consensus        59 ~C~~H~~~~knE~N~FCldC~~~~~C~~Cl~-~H~~HrvlQ   98 (174)
                      .|+.|..   +...+||.+|. ..+|..|.. .|++|.++-
T Consensus         2 ~C~~H~~---~~~~~fC~~~~-~~iC~~C~~~~H~~H~~~~   38 (39)
T cd00021           2 LCDEHGE---EPLSLFCETDR-ALLCVDCDLSVHSGHRRVP   38 (39)
T ss_pred             CCCccCC---cceEEEeCccC-hhhhhhcChhhcCCCCEee
Confidence            4777753   24589999998 899999975 688887654

>smart00336 BBOX B-Box-type zinc finger

Probab=94.51  E-value=0.029  Score=34.44  Aligned_cols=35  Identities=31%  Similarity=0.836  Sum_probs=27.5

Q ss_pred             cccccccCCCCCcceecccCCCCcCCccccc-CCCCCcee
Q 030621           59 QCKLHADAHKSECNMYCLDCMNGALCSLCLS-LHRDHRAI   97 (174)
Q Consensus        59 ~C~~H~~~~knE~N~FCldC~~~~~C~~Cl~-~H~~Hrvl   97 (174)
                      .|..|.+   ....+||.+|. ..+|..|.. .|++|+++
T Consensus         5 ~C~~h~~---~~~~~~C~~c~-~~iC~~C~~~~H~~H~~~   40 (42)
T smart00336        5 KCDSHGD---EPAEFFCEECG-ALLCRTCDEAEHRGHTVV   40 (42)
T ss_pred             cCCCCCC---CceEEECCCCC-cccccccChhhcCCCcee
Confidence            4777763   24579999998 899999986 58888765

>PF12855 Ecl1: Life-span regulatory factor; InterPro: IPR024368 The fungal proteins in this entry are involved in the regulation of chronological life-span [, ]

Probab=91.72  E-value=0.038  Score=36.49  Aligned_cols=26  Identities=27%  Similarity=0.875  Sum_probs=22.9

Q ss_pred             Ccccccccccc---CCCCeeeeccccccC
Q 030621          148 TNTCLVCERSL---LDSFTFCSLGCKVNQ  173 (174)
Q Consensus       148 ~~~C~~C~R~L---~d~~rFCSL~CKv~~  173 (174)
                      .+.|.+|+|.+   .+...|||-.|++.+
T Consensus         6 ~~yC~~Cdk~~~~~~~~~lYCSe~Cr~~D   34 (43)
T PF12855_consen    6 NDYCIVCDKQIDPPDDGSLYCSEECRLKD   34 (43)
T ss_pred             hhHHHHhhccccCCCCCccccCHHHHhHh
Confidence            46799999999   668999999999875

Overexpression of these proteins has been shown to extend the chronological life-span of wild-type strains. The mechanism by which this happens is not known, but microarray data suggests that they may function as pleiptropic stress regulators.

>PF03884 DUF329: Domain of unknown function (DUF329); InterPro: IPR005584 The biological function of these short proteins is unknown, but they contain four conserved cysteines, suggesting that they all bind zinc

Probab=87.66  E-value=0.073  Score=37.11  Aligned_cols=26  Identities=35%  Similarity=0.756  Sum_probs=16.0

Q ss_pred             CccccccccccCC----CCe-eeeccccccC
Q 030621          148 TNTCLVCERSLLD----SFT-FCSLGCKVNQ  173 (174)
Q Consensus       148 ~~~C~~C~R~L~d----~~r-FCSL~CKv~~  173 (174)
                      +..|-+|++...-    +|+ |||-.||+.+
T Consensus         2 ~v~CP~C~k~~~~~~~n~~rPFCS~RCk~iD   32 (57)
T PF03884_consen    2 TVKCPICGKPVEWSPENPFRPFCSERCKLID   32 (57)
T ss_dssp             EEE-TTT--EEE-SSSSS--SSSSHHHHHHH
T ss_pred             cccCCCCCCeecccCCCCcCCcccHhhcccC
Confidence            3469999998875    665 9999999753

YacG (Q5X8H6 from SWISSPROT) from Escherichia coli has been shown to bind zinc and contains the structural motifs typical of zinc-binding proteins []. The conserved four cysteine motif in these proteins (-C-X(2)-C-X(15)-C-X(3)-C-) is not found in other zinc-binding proteins with known structures.; GO: 0008270 zinc ion binding; PDB: 1LV3_A.

>PRK01343 zinc-binding protein; Provisional

Probab=81.95  E-value=0.59  Score=32.72  Aligned_cols=26  Identities=27%  Similarity=0.667  Sum_probs=21.2

Q ss_pred             CccccccccccCCC-CeeeeccccccC
Q 030621          148 TNTCLVCERSLLDS-FTFCSLGCKVNQ  173 (174)
Q Consensus       148 ~~~C~~C~R~L~d~-~rFCSL~CKv~~  173 (174)
                      ...|-+|++..... .-|||-.||..+
T Consensus         9 ~~~CP~C~k~~~~~~rPFCS~RC~~iD   35 (57)
T PRK01343          9 TRPCPECGKPSTREAYPFCSERCRDID   35 (57)
T ss_pred             CCcCCCCCCcCcCCCCcccCHHHhhhh
Confidence            45699999987764 589999999865

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	174
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 40.2 bits (93), Expect = 2e-04
 Identities = 31/182 (17%), Positives = 51/182 (28%), Gaps = 63/182 (34%)

Query: 8   NRDHQELLTVR----EFKPKNRRI----MGGGGPEEEDEEMSNKWPPWLRPLLQTSFFVQ 59
           +R  Q  L +R    E +P  + +    + G G          K   W+   +  S+ VQ
Sbjct: 132 SR-LQPYLKLRQALLELRP-AKNVLIDGVLGSG----------KT--WVALDVCLSYKVQ 177

Query: 60  CKLHADAH-----KSECNMYCLDCMNGALCSLCLSLHRDHRAIQIRRSSYHDVIRVSEIQ 114
           CK+                  L+ +      L   +  D         S +  +R+  IQ
Sbjct: 178 CKMDFKIFWLNLKNCNSPETVLEMLQ----KLLYQI--DPNWTSRSDHSSNIKLRIHSIQ 231

Query: 115 KYLDITGVQTYIINSARIVFLNERPQPRPGKGVTNTCL-----VCERSLLDSFTFCSLGC 169
             L                 L  +P           CL     V      ++F      C
Sbjct: 232 AELRR--------------LLKSKPYEN--------CLLVLLNVQNAKAWNAFNL---SC 266

Query: 170 KV 171
           K+
Sbjct: 267 KI 268

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	174
3ddt_A	48	E3 ubiquitin-protein ligase TRIM63; zinc-binding m	95.33
2d8u_A	64	Ubiquitin ligase TRIM63; tripartite motif-containi	94.64
1fre_A	42	Nuclear factor XNF7; zinc-binding protein, BBOX, d	94.63
2yvr_A	50	Transcription intermediary factor 1-beta; ZF-B_BOX	94.39
2did_A	53	Tripartite motif protein 39; ZF-B-box domian, Zn b	94.2
2yrg_A	59	Tripartite motif-containing protein 5; B-box domai	92.62
2csv_A	72	Tripartite motif protein 29; ZF-B_BOX domain, TRIM	92.25
2dja_A	84	Midline-2; tripartite motif protein 1, ZF-B_BOX, s	90.44
2egm_A	57	Tripartite motif-containing protein 41; ZF-B_BOX d	89.86
2jun_A	101	Midline-1; B-BOX, TRIM, ring finger, alternative s	89.84
2das_A	62	Zinc finger MYM-type protein 5; trash domain, stru	86.97
2w0t_A	43	Lethal(3)malignant brain tumor-like 2 protein; zin	85.36

>3ddt_A E3 ubiquitin-protein ligase TRIM63; zinc-binding motif, ring-like fold, coiled coil, cytoplasm, metal-binding, muscle protein, nucleus; 1.90A {Homo sapiens} SCOP: g.43.1.1 PDB: 3q1d_A

Probab=95.33  E-value=0.006  Score=38.36  Aligned_cols=38  Identities=34%  Similarity=0.791  Sum_probs=30.0

Q ss_pred             ccccccccCCCCCcceecccCCCCcCCcccc-c-CCCCCceeEE
Q 030621           58 VQCKLHADAHKSECNMYCLDCMNGALCSLCL-S-LHRDHRAIQI   99 (174)
Q Consensus        58 ~~C~~H~~~~knE~N~FCldC~~~~~C~~Cl-~-~H~~HrvlQI   99 (174)
                      ..|..|..   ...++||.+|. .++|..|. . .|++|+++.|
T Consensus         7 ~~C~~H~~---e~l~lfC~~d~-~~iC~~C~~~~~H~~H~~~~l   46 (48)
T 3ddt_A            7 PMCKEHED---EKINIYCLTCE-VPTCSMCKVFGIHKACEVAPL   46 (48)
T ss_dssp             CBCSSSTT---SBCCEEETTTT-EEECHHHHHHSTTTTSCEEEC
T ss_pred             CcCCCCCC---ccccEEcCCCC-eeEcccccCCCcCCCCcEEeC
Confidence            46998863   23679999997 89999996 3 7999987654

>2d8u_A Ubiquitin ligase TRIM63; tripartite motif-containing 63, muscle-specific ring finger protein 1, MURF1, ring finger protein 28; NMR {Homo sapiens} SCOP: g.43.1.1

Probab=94.64  E-value=0.01  Score=38.98  Aligned_cols=36  Identities=36%  Similarity=0.842  Sum_probs=28.5

Q ss_pred             cccccccCCCCCcceecccCCCCcCCccccc--CCCCCceeE
Q 030621           59 QCKLHADAHKSECNMYCLDCMNGALCSLCLS--LHRDHRAIQ   98 (174)
Q Consensus        59 ~C~~H~~~~knE~N~FCldC~~~~~C~~Cl~--~H~~HrvlQ   98 (174)
                      .|..|++   ...++||.+|. ..+|..|..  .|++|+++-
T Consensus        10 ~C~~H~~---e~l~lfC~~d~-~~iC~~C~~~~~H~~H~~~~   47 (64)
T 2d8u_A           10 MCKEHED---EKINIYCLTCE-VPTCSMCKVFGIHKACEVAP   47 (64)
T ss_dssp             CCSSCTT---CCCCSEESSSC-CCCCSHHHHSSSTTSSCEEC
T ss_pred             cCcCcCC---CccceEcCcCC-ceeCccccCCCcCCCCCeeC
Confidence            4999954   24679999998 899999963  799998653

>1fre_A Nuclear factor XNF7; zinc-binding protein, BBOX, development, MID-blastula- transition; NMR {Xenopus laevis} SCOP: g.43.1.1

Probab=94.63  E-value=0.016  Score=35.20  Aligned_cols=35  Identities=26%  Similarity=0.624  Sum_probs=28.3

Q ss_pred             cccccccCCCCCcceecccCCCCcCCccccc--CCCCCceeE
Q 030621           59 QCKLHADAHKSECNMYCLDCMNGALCSLCLS--LHRDHRAIQ   98 (174)
Q Consensus        59 ~C~~H~~~~knE~N~FCldC~~~~~C~~Cl~--~H~~HrvlQ   98 (174)
                      .|..|..    ...+||.++. ..+|..|..  .|++|+++-
T Consensus         5 ~C~~H~e----~l~lfC~~d~-~~iC~~C~~~~~H~~H~~~~   41 (42)
T 1fre_A            5 KCSEHDE----RLKLYCKDDG-TLSCVICRDSLKHASHNFLP   41 (42)
T ss_dssp             CCCSSCS----SCCCCCCSSS-SSSCCTTSSCSSCTTCCCCC
T ss_pred             cchhhCC----eeeEEeCCCC-eEEeccCCCCCCCCCCcEec
Confidence            5888852    4679999998 889999975  799998753

>2yvr_A Transcription intermediary factor 1-beta; ZF-B_BOX domain, structural genomics, NPPSFA; 1.80A {Homo sapiens}

Probab=94.39  E-value=0.01  Score=37.40  Aligned_cols=36  Identities=25%  Similarity=0.598  Sum_probs=28.2

Q ss_pred             cccccccCCCCCcceecccCCCCcCCccccc-CCCCCceeE
Q 030621           59 QCKLHADAHKSECNMYCLDCMNGALCSLCLS-LHRDHRAIQ   98 (174)
Q Consensus        59 ~C~~H~~~~knE~N~FCldC~~~~~C~~Cl~-~H~~HrvlQ   98 (174)
                      .|..|+.   ...++||.+|. ..+|..|.. .|++|+++-
T Consensus         8 ~C~~H~~---e~l~lfC~~~~-~~iC~~C~~~~H~~H~~~~   44 (50)
T 2yvr_A            8 YCNVHKH---EPLVLFCESCD-TLTCRDCQLNAHKDHQYQF   44 (50)
T ss_dssp             BCSSSTT---CBCCEEETTTT-EEECHHHHHTTTTTCCEEE
T ss_pred             cCcCCCC---CCEEEEeCCCC-EEEecccCCCcCCCCceec
Confidence            4898953   24679999998 899999964 788887653

>2did_A Tripartite motif protein 39; ZF-B-box domian, Zn binding, one sequence two fold, NPPSFA; NMR {Homo sapiens} SCOP: g.43.1.1 PDB: 2dif_A

Probab=94.20  E-value=0.019  Score=36.61  Aligned_cols=36  Identities=25%  Similarity=0.719  Sum_probs=29.1

Q ss_pred             cccccccCCCCCcceecccCCCCcCCccccc--CCCCCceeEE
Q 030621           59 QCKLHADAHKSECNMYCLDCMNGALCSLCLS--LHRDHRAIQI   99 (174)
Q Consensus        59 ~C~~H~~~~knE~N~FCldC~~~~~C~~Cl~--~H~~HrvlQI   99 (174)
                      .|..|..    ...+||.+|. ..+|..|..  .|++|+++-|
T Consensus        10 ~C~~H~e----~l~lfC~~d~-~~iC~~C~~~~~H~~H~~~~l   47 (53)
T 2did_A           10 LCPQHHE----ALSLFCYEDQ-EAVCLICAISHTHRAHTVVPL   47 (53)
T ss_dssp             BCTTTCC----BCCEEESSSC-SEECHHHHTSSTTTTSCEEEC
T ss_pred             cChhhCC----eeeEEeCCCC-eEEeccccCCCCCCCCcEeeH
Confidence            5999952    4679999998 899999964  7999987654

>2yrg_A Tripartite motif-containing protein 5; B-box domain, ring finger protein 88, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=92.62  E-value=0.049  Score=35.85  Aligned_cols=36  Identities=25%  Similarity=0.627  Sum_probs=29.5

Q ss_pred             cccccccCCCCCcceecccCCCCcCCccccc--CCCCCceeEE
Q 030621           59 QCKLHADAHKSECNMYCLDCMNGALCSLCLS--LHRDHRAIQI   99 (174)
Q Consensus        59 ~C~~H~~~~knE~N~FCldC~~~~~C~~Cl~--~H~~HrvlQI   99 (174)
                      .|..|..    ...+||.++. ..+|..|..  .|++|+++-|
T Consensus        16 ~C~~H~e----~L~lfC~~d~-~~iC~~C~~s~eH~~H~~~~l   53 (59)
T 2yrg_A           16 HCARHGE----KLLLFCQEDG-KVICWLCERSQEHRGHHTFPT   53 (59)
T ss_dssp             BCTTTCC----BCCEEETTTC-SEECHHHHTSTTTTTCCEEEC
T ss_pred             cChhhCc----eeeeecCCCC-cEEecccCCCCcCCCCcEeeH
Confidence            4999963    4679999997 889999974  7999987754

>2csv_A Tripartite motif protein 29; ZF-B_BOX domain, TRIM29, ataxia-telangiectasia group D-associated protein, ATDC, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.43.1.1

Probab=92.25  E-value=0.04  Score=37.16  Aligned_cols=35  Identities=23%  Similarity=0.758  Sum_probs=28.0

Q ss_pred             cccccccCCCCCcceecccCCCCcCCccccc-CCCCCceeE
Q 030621           59 QCKLHADAHKSECNMYCLDCMNGALCSLCLS-LHRDHRAIQ   98 (174)
Q Consensus        59 ~C~~H~~~~knE~N~FCldC~~~~~C~~Cl~-~H~~HrvlQ   98 (174)
                      .|..|..    ...+||.+|. ..+|..|.. .|++|+++-
T Consensus        20 ~C~~H~e----~l~lfC~~d~-~~iC~~C~~~~H~~H~~~~   55 (72)
T 2csv_A           20 KCPVHGK----TMELFCQTDQ-TCICYLCMFQEHKNHSTVT   55 (72)
T ss_dssp             BCTTTCC----BCCEEESSSC-CEECHHHHHTTTSSSCEEE
T ss_pred             cCcccCC----ceEEEeCCCC-eEEccccCCCCCCCCCEec
Confidence            6999942    4679999998 889999975 788887654

>2dja_A Midline-2; tripartite motif protein 1, ZF-B_BOX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.43.1.1 PDB: 2dq5_A

Probab=90.44  E-value=0.06  Score=36.97  Aligned_cols=38  Identities=34%  Similarity=0.757  Sum_probs=29.6

Q ss_pred             cccccccCCCCCcceecccCCCCcCCccccc--CCCCCceeEEE
Q 030621           59 QCKLHADAHKSECNMYCLDCMNGALCSLCLS--LHRDHRAIQIR  100 (174)
Q Consensus        59 ~C~~H~~~~knE~N~FCldC~~~~~C~~Cl~--~H~~HrvlQIR  100 (174)
                      .|..|..   ....+||.+|. ..+|..|..  .|++|+++-|-
T Consensus        20 ~C~~H~~---e~l~lfC~~d~-~~iC~~C~~~~~H~~H~~~~l~   59 (84)
T 2dja_A           20 TCLDHEN---EKVNMYCVSDD-QLICALCKLVGRHRDHQVASLN   59 (84)
T ss_dssp             CCSSCSS---SCCCEEETTTT-EEECHHHHHTSTTTTCCBCCCC
T ss_pred             cCcCcCC---ccccEEcCCCC-ceEcccCcCCCCCCCCCccCHH
Confidence            5999953   13679999998 899999964  79999876443

>2egm_A Tripartite motif-containing protein 41; ZF-B_BOX domain, tripartite motif protein 41, TRIM41, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=89.86  E-value=0.032  Score=36.58  Aligned_cols=35  Identities=23%  Similarity=0.626  Sum_probs=28.5

Q ss_pred             cccccccCCCCCcceecccCCCCcCCccccc--CCCCCceeE
Q 030621           59 QCKLHADAHKSECNMYCLDCMNGALCSLCLS--LHRDHRAIQ   98 (174)
Q Consensus        59 ~C~~H~~~~knE~N~FCldC~~~~~C~~Cl~--~H~~HrvlQ   98 (174)
                      .|..|..    ...+||.+|. ..+|..|..  .|++|+++.
T Consensus        20 ~C~~H~e----~L~lfC~~d~-~~iC~~C~~~~eH~~H~~~~   56 (57)
T 2egm_A           20 ICPKHQE----ALKLFCEVDE-EAICVVCRESRSHKQHSVVP   56 (57)
T ss_dssp             BCTTTCC----BCCEEETTTT-EEECHHHHHSHHHHSSCEEC
T ss_pred             cChhhCc----eeeEEcCCCC-cEEecccCCCCCCCCCcEec
Confidence            4999942    4679999997 889999974  699998763

>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}

Probab=89.84  E-value=0.084  Score=37.08  Aligned_cols=37  Identities=38%  Similarity=0.804  Sum_probs=29.2

Q ss_pred             ccccccccCCCCCcceecccCCCCcCCcccc--cCCCCCceeE
Q 030621           58 VQCKLHADAHKSECNMYCLDCMNGALCSLCL--SLHRDHRAIQ   98 (174)
Q Consensus        58 ~~C~~H~~~~knE~N~FCldC~~~~~C~~Cl--~~H~~HrvlQ   98 (174)
                      ..|..|..   ...++||.+|. ..+|..|.  ..|++|+++-
T Consensus        60 ~~C~~H~~---e~l~~fC~~~~-~~iC~~C~~~~~H~~H~~~~   98 (101)
T 2jun_A           60 LMCLEHED---EKVNMYCVTDD-QLICALCKLVGRHRDHQVAA   98 (101)
T ss_dssp             CCCSSCSS---SCCCEEETTTT-EEECHHHHHHTTTSSSCBCC
T ss_pred             CcCcCcCC---CcceEECCCCC-CccchhcCCCCCcCCCCeec
Confidence            36999963   23679999997 89999996  4799998753

>2das_A Zinc finger MYM-type protein 5; trash domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.17

Probab=86.97  E-value=0.41  Score=33.07  Aligned_cols=30  Identities=30%  Similarity=0.596  Sum_probs=24.3

Q ss_pred             CCCCCCCCccccccccccCC----------CCeeeecccc
Q 030621          141 PRPGKGVTNTCLVCERSLLD----------SFTFCSLGCK  170 (174)
Q Consensus       141 ~r~~kg~~~~C~~C~R~L~d----------~~rFCSL~CK  170 (174)
                      .++.+....+|+.|.+.|+.          +-.|||..|-
T Consensus        13 q~~~~~~~v~C~~CKk~lqKGQtAyqrkGs~~LFCS~~CL   52 (62)
T 2das_A           13 QQLTKPAKITCANCKKPLQKGQTAYQRKGSAHLFCSTTCL   52 (62)
T ss_dssp             CCCSSCSSCBCTTTCCBCCTTSCCEECTTCCCEESSHHHH
T ss_pred             cCCCCccccChhhccchhhcCceeeeecCchhheechHHH
Confidence            45666678899999999983          4589999984

>2w0t_A Lethal(3)malignant brain tumor-like 2 protein; zinc, YACG, LMBL2, nucleus, zinc-finger, RNA binding, MBT repeats, PCG proteins, polymorphism; NMR {Homo sapiens}

Probab=85.36  E-value=0.2  Score=32.32  Aligned_cols=25  Identities=24%  Similarity=0.635  Sum_probs=18.3

Q ss_pred             CCCccccccccc-cCC-----CCeeeecccc
Q 030621          146 GVTNTCLVCERS-LLD-----SFTFCSLGCK  170 (174)
Q Consensus       146 g~~~~C~~C~R~-L~d-----~~rFCSL~CK  170 (174)
                      +....||.|++. ...     +-||||++|-
T Consensus         4 ~~~~~CE~CG~~g~~~~F~~ksKRFCS~~Ca   34 (43)
T 2w0t_A            4 SEPAVCEMCGIVGTREAFFSKTKRFCSVSCS   34 (43)
T ss_dssp             CCEEECTTTCCEEETTTSCTTTSSSSSHHHH
T ss_pred             CceehhhhhcCcchhhhhccCCcceechhhh
Confidence            345689999984 333     4599999994

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	174
d1frea_	39	Nuclear factor XNF7 {African clawed frog (Xenopus	96.21
d2csva1	59	Tripartite motif-containing protein 29 {Human (Hom	96.06
d2d8ua1	51	Ubiquitin ligase trim63 {Human (Homo sapiens) [Tax	95.89
d2dida1	40	Tripartite motif-containing protein 39 {Human (Hom	95.45
d2djaa1	71	Midline-2 {Human (Homo sapiens) [TaxId: 9606]}	95.43
d2dq5a1	47	Midline-1 {Human (Homo sapiens) [TaxId: 9606]}	95.31

>d1frea_ g.43.1.1 (A:) Nuclear factor XNF7 {African clawed frog (Xenopus laevis) [TaxId: 8355]}

class: Small proteins
fold: B-box zinc-binding domain
superfamily: B-box zinc-binding domain
family: B-box zinc-binding domain
domain: Nuclear factor XNF7
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

Probab=96.21  E-value=0.0013  Score=39.56  Aligned_cols=34  Identities=26%  Similarity=0.644  Sum_probs=28.2

Q ss_pred             cccccccCCCCCcceecccCCCCcCCccccc--CCCCCcee
Q 030621           59 QCKLHADAHKSECNMYCLDCMNGALCSLCLS--LHRDHRAI   97 (174)
Q Consensus        59 ~C~~H~~~~knE~N~FCldC~~~~~C~~Cl~--~H~~Hrvl   97 (174)
                      .|+.|..    ..++||.+|. ..+|..|..  .|++|.++
T Consensus         2 ~C~~H~e----~l~lfC~~d~-~~iC~~C~~~~~H~~H~v~   37 (39)
T d1frea_           2 KCSEHDE----RLKLYCKDDG-TLSCVICRDSLKHASHNFL   37 (39)
T ss_dssp             CCCSSCS----SCCCCCCSSS-SSSCCTTSSCSSCTTCCCC
T ss_pred             CCcccCc----ceeEEcccCC-cEeeccCcCCCCcCCCcEe
Confidence            5888853    5789999998 899999964  69999875

>d2csva1 g.43.1.1 (A:8-66) Tripartite motif-containing protein 29 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: B-box zinc-binding domain
superfamily: B-box zinc-binding domain
family: B-box zinc-binding domain
domain: Tripartite motif-containing protein 29
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.06  E-value=0.00075  Score=43.55  Aligned_cols=36  Identities=22%  Similarity=0.766  Sum_probs=29.5

Q ss_pred             cccccccCCCCCcceecccCCCCcCCccccc-CCCCCceeEE
Q 030621           59 QCKLHADAHKSECNMYCLDCMNGALCSLCLS-LHRDHRAIQI   99 (174)
Q Consensus        59 ~C~~H~~~~knE~N~FCldC~~~~~C~~Cl~-~H~~HrvlQI   99 (174)
                      .|..|..    ...+||.+|. ..+|..|+. .|++|.++.|
T Consensus        13 ~C~~H~e----~l~lyC~~c~-~~iC~~C~~~~H~~H~~~~l   49 (59)
T d2csva1          13 KCPVHGK----TMELFCQTDQ-TCICYLCMFQEHKNHSTVTV   49 (59)
T ss_dssp             BCTTTCC----BCCEEESSSC-CEECHHHHHTTTSSSCEEEH
T ss_pred             chhhhCC----ccceECCCCC-ceECcccCcccCCCCCeeCH
Confidence            6999942    5679999998 899999976 7999887644

>d2d8ua1 g.43.1.1 (A:8-58) Ubiquitin ligase trim63 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: B-box zinc-binding domain
superfamily: B-box zinc-binding domain
family: B-box zinc-binding domain
domain: Ubiquitin ligase trim63
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.89  E-value=0.0012  Score=41.50  Aligned_cols=36  Identities=36%  Similarity=0.826  Sum_probs=28.2

Q ss_pred             cccccccCCCCCcceecccCCCCcCCcccc-c-CCCCCceeE
Q 030621           59 QCKLHADAHKSECNMYCLDCMNGALCSLCL-S-LHRDHRAIQ   98 (174)
Q Consensus        59 ~C~~H~~~~knE~N~FCldC~~~~~C~~Cl-~-~H~~HrvlQ   98 (174)
                      .|+.|++   ...++||.+|. .++|..|. . .|++|.+.-
T Consensus         3 ~C~~H~~---e~l~~yC~~c~-~~iC~~C~~~~~Hk~H~v~~   40 (51)
T d2d8ua1           3 MCKEHED---EKINIYCLTCE-VPTCSMCKVFGIHKACEVAP   40 (51)
T ss_dssp             CCSSCTT---CCCCSEESSSC-CCCCSHHHHSSSTTSSCEEC
T ss_pred             CCcccCc---CcceEEcCCCC-ceECccccCcCCcCcCcCcC
Confidence            5888864   23679999998 89999994 3 799997653

>d2dida1 g.43.1.1 (A:8-47) Tripartite motif-containing protein 39 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: B-box zinc-binding domain
superfamily: B-box zinc-binding domain
family: B-box zinc-binding domain
domain: Tripartite motif-containing protein 39
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.45  E-value=0.0029  Score=38.11  Aligned_cols=34  Identities=26%  Similarity=0.736  Sum_probs=28.4

Q ss_pred             cccccccCCCCCcceecccCCCCcCCccccc--CCCCCcee
Q 030621           59 QCKLHADAHKSECNMYCLDCMNGALCSLCLS--LHRDHRAI   97 (174)
Q Consensus        59 ~C~~H~~~~knE~N~FCldC~~~~~C~~Cl~--~H~~Hrvl   97 (174)
                      .|+.|..    ..++||.+|. ..+|..|..  .|++|+++
T Consensus         3 ~C~~H~e----~l~lfC~~d~-~~iC~~C~~~~~H~~H~v~   38 (40)
T d2dida1           3 LCPQHHE----ALSLFCYEDQ-EAVCLICAISHTHRAHTVV   38 (40)
T ss_dssp             BCTTTCC----BCCEEESSSC-SEECHHHHTSSTTTTSCEE
T ss_pred             cchhhCc----cceEEcccCC-cEeeccCcCCCCcCCCcEe
Confidence            5888853    5789999998 899999964  69999876

>d2djaa1 g.43.1.1 (A:8-78) Midline-2 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: B-box zinc-binding domain
superfamily: B-box zinc-binding domain
family: B-box zinc-binding domain
domain: Midline-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.43  E-value=0.0016  Score=42.73  Aligned_cols=39  Identities=33%  Similarity=0.743  Sum_probs=30.1

Q ss_pred             cccccccCCCCCcceecccCCCCcCCcccc-c-CCCCCceeEEEe
Q 030621           59 QCKLHADAHKSECNMYCLDCMNGALCSLCL-S-LHRDHRAIQIRR  101 (174)
Q Consensus        59 ~C~~H~~~~knE~N~FCldC~~~~~C~~Cl-~-~H~~HrvlQIRR  101 (174)
                      .|+.|.+.   ..++||.+|. ..+|..|. . .|++|.+.-|..
T Consensus        13 ~C~~H~~e---~l~~fC~~C~-~~iC~~C~~~~~Hk~H~~~~i~~   53 (71)
T d2djaa1          13 TCLDHENE---KVNMYCVSDD-QLICALCKLVGRHRDHQVASLND   53 (71)
T ss_dssp             CCSSCSSS---CCCEEETTTT-EEECHHHHHTSTTTTCCBCCCCS
T ss_pred             cCcccCCc---cceeEcCCCC-ceeccccccCCCCCCCcCcCHHH
Confidence            49999641   2589999998 89999995 3 699998765543

>d2dq5a1 g.43.1.1 (A:168-214) Midline-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: B-box zinc-binding domain
superfamily: B-box zinc-binding domain
family: B-box zinc-binding domain
domain: Midline-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.31  E-value=0.00095  Score=41.42  Aligned_cols=35  Identities=40%  Similarity=0.822  Sum_probs=28.0

Q ss_pred             cccccccCCCCCcceecccCCCCcCCcccc-c-CCCCCcee
Q 030621           59 QCKLHADAHKSECNMYCLDCMNGALCSLCL-S-LHRDHRAI   97 (174)
Q Consensus        59 ~C~~H~~~~knE~N~FCldC~~~~~C~~Cl-~-~H~~Hrvl   97 (174)
                      .|+.|++   .+-++||.+|. .++|..|. . .|++|.+.
T Consensus         7 ~C~~H~~---e~l~~yC~~C~-~~iC~~C~~~~~H~~H~~~   43 (47)
T d2dq5a1           7 MCLEHED---EKVNMYCVTDD-QLICALCKLVGRHRDHQVA   43 (47)
T ss_dssp             BCSSCTT---SBEEEEETTTT-EEEEHHHHHTSSTTSSCCC
T ss_pred             cchhhCC---CcceEEcCCCC-ccCCccCcCcCCcCCCeEe
Confidence            4888864   24689999998 89999994 3 79999764